BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (377 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P26266 Ferric enterobactin transport protein fepE n=158... 771 0.0 UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 T... 369 e-101 UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enter... 258 3e-67 UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yers... 251 3e-65 UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 T... 228 3e-58 UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10... 226 1e-57 UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=En... 220 8e-56 UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersini... 218 2e-55 UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Provide... 214 3e-54 UniRef50_UPI000197BC0B ferric enterobactin transport protein Fep... 195 2e-48 UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Pr... 191 3e-47 UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aerom... 130 1e-28 UniRef50_C4K3Z7 Regulator of length of O-antigen component of li... 122 3e-26 UniRef50_A1JMR4 O-antigen chain length determinant n=5 Tax=Yersi... 121 4e-26 UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photoba... 104 4e-21 UniRef50_P35272 Chain length determinant protein n=110 Tax=Enter... 99 4e-19 UniRef50_A5KZS4 Regulator of length of O-antigen component of li... 97 1e-18 UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio ... 94 1e-17 UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannhei... 92 2e-17 UniRef50_C9P0E2 Regulator of length of O-antigen component of li... 91 6e-17 UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropn... 87 9e-16 UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=... 86 2e-15 UniRef50_A7JUL8 O-antigen chain length determining protein n=2 T... 86 2e-15 UniRef50_Q04866 Chain length determinant protein n=30 Tax=Salmon... 85 5e-15 UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae Re... 82 3e-14 UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=... 81 8e-14 UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0... 80 2e-13 UniRef50_A1SRR6 Chain length determinant protein-like protein n=... 78 5e-13 UniRef50_Q3YTC2 O antigen chain length determinant protein n=5 T... 77 8e-13 UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=1... 73 1e-11 UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C... 71 5e-11 UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 T... 71 7e-11 UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycete... 63 1e-08 UniRef50_P44063 Uncharacterized protein HI0866 n=7 Tax=Haemophil... 63 2e-08 UniRef50_Q1Z8B9 Ferric enterobactin transport protein n=1 Tax=Ph... 59 2e-07 UniRef50_Q2BJF5 O-antigen chain length regulator n=1 Tax=Neptuni... 57 1e-06 UniRef50_C3K6I8 Conserved hypothetical chain length determinant ... 49 2e-04 UniRef50_A4C8G6 OtnB protein n=1 Tax=Pseudoalteromonas tunicata ... 49 4e-04 UniRef50_Q02PW5 O-antigen chain length regulator n=19 Tax=Pseudo... 48 6e-04 UniRef50_Q8KN75 Wzz n=1 Tax=Pseudomonas aeruginosa RepID=Q8KN75_... 47 0.001 UniRef50_C7M6P7 Lipopolysaccharide biosynthesis protein n=2 Tax=... 46 0.002 UniRef50_Q1N5G1 Lipopolysaccharide biosynthesis n=1 Tax=Bermanel... 46 0.002 UniRef50_D0YWK9 O-antigen chain length determinant protein n=1 T... 45 0.004 UniRef50_Q31F07 Lipopolysaccharide biosynthesis protein Wzz n=1 ... 45 0.004 UniRef50_A3JJA1 Lipopolysaccharide biosynthesis n=1 Tax=Marinoba... 45 0.004 UniRef50_C4FKG4 Lipopolysaccharide biosynthesis protein (Fragmen... 45 0.005 UniRef50_Q5R093 Chain length determinant protein n=1 Tax=Idiomar... 44 0.008 UniRef50_A4Y8H9 Lipopolysaccharide biosynthesis n=30 Tax=Gammapr... 44 0.011 UniRef50_Q1ID96 O-antigen chain length regulator protein (Wzz) n... 44 0.012 UniRef50_B0VFR9 Putative uncharacterized protein n=1 Tax=Candida... 43 0.018 UniRef50_B3RTL5 Putative uncharacterized protein n=1 Tax=Trichop... 42 0.035 UniRef50_Q1QWX5 Lipopolysaccharide biosynthesis n=1 Tax=Chromoha... 42 0.041 >UniRef50_P26266 Ferric enterobactin transport protein fepE n=158 Tax=cellular organisms RepID=FEPE_ECOLI Length = 377 Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust. Identities = 377/377 (100%), Positives = 377/377 (100%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI Sbjct: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY Sbjct: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 Query: 121 LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT 180 LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT Sbjct: 121 LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT 180 Query: 181 SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL Sbjct: 181 SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 Query: 241 NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN 300 NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN Sbjct: 241 NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN 300 Query: 301 RQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR 360 RQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR Sbjct: 301 RQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR 360 Query: 361 YAMASRKQDAMMADHLV 377 YAMASRKQDAMMADHLV Sbjct: 361 YAMASRKQDAMMADHLV 377 >UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 Tax=Cronobacter RepID=C9XZM2_CROTZ Length = 377 Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust. Identities = 183/377 (48%), Positives = 264/377 (70%), Gaps = 1/377 (0%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 MSS++IK A PDYPL E+DL L++VL++A+K ++++ F GL ++F+ Sbjct: 1 MSSIDIKNNPLASAPDYPLLDHPRAELDLFALVAVLFKARKMILSITALFIVMGLALAFL 60 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 LPQKWTS AVV+ PE Q EL++ L+VLD+D ID N+F+KKF S +L E++ Sbjct: 61 LPQKWTSEAVVSIPETRQLIELQRVLVDLQVLDVDAAIDAASLENMFLKKFDSRALQEKF 120 Query: 121 LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT 180 LR+SP+V Q+KEA+ D L RA+ +++++K + N + K S Y+SWTLSFTAP Sbjct: 121 LRTSPWVQAQVKEAQSDTESLERAVTLVAQRIK-MTSNDNPKAPTASPYSSWTLSFTAPK 179 Query: 181 SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 +++AQ VL YI+Y + V ++ LEN+R +E+K + E+ +L DR N+ IQRL Sbjct: 180 AQDAQRVLKEYINYAALAVQRQVLENLRTTIELKVKSEESRLMIDRNTLANEHKIAIQRL 239 Query: 241 NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN 300 NYSL +ANAAGIKKPVYSNGQAVKDDPD+SI+LGADG+ +KL IE+++TDV LN ++N Sbjct: 240 NYSLQVANAAGIKKPVYSNGQAVKDDPDYSIALGADGLAQKLAIERSITDVTALNAAIQN 299 Query: 301 RQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR 360 R+Y + +L K ++ DV+F PF YQ++PSLPVK DGPGKA+++IL+ L+G ++AC VL+R Sbjct: 300 REYRLAELKKLNLADVDFQPFHYQMAPSLPVKSDGPGKALVLILATLMGFIIACALVLVR 359 Query: 361 YAMASRKQDAMMADHLV 377 +A R+ AD L+ Sbjct: 360 DVIAQRQVHPAGADTLL 376 >UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enterobacteriaceae RepID=B4F1Q0_PROMH Length = 372 Score = 258 bits (658), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 144/365 (39%), Positives = 218/365 (59%), Gaps = 14/365 (3%) Query: 12 AHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVV 71 HF D+ L N+EIDL L SVL+++K ++ + FA G ++ LPQKWTS A + Sbjct: 16 GHFDDFYLKQ--NDEIDLFELFSVLYKSKFVIIGITLLFAIVGFTVASFLPQKWTSQAAI 73 Query: 72 TPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQL 131 T P + ++L + L ++D+D ++ + + FI + S L EEYL ++ Y + L Sbjct: 74 TKPMLDEMKQLRATLNDLSLVDVDTGVNASSVYQKFINNYNSRVLREEYLVNTDYYKNLL 133 Query: 132 KEAKIDE---LDLHRAIVALSEK---MKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQ 185 AK+D+ LD + I + K +KA D SK DE LSFTAPTSEEA Sbjct: 134 --AKMDDPTPLDKRKLIETIVTKDINLKASD---SKNSDE-EFSGEINLSFTAPTSEEAY 187 Query: 186 TVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLD 245 +LSGYI +IST V E + + +++E K ++ D + N + N+QRL Y+L+ Sbjct: 188 DLLSGYIRFISTKVRVEVKDEIDDQIERKLNHAQKAYQMDLERIANARNVNVQRLKYALE 247 Query: 246 IANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLV 305 IANAAG+KKP+ S G +KDDPD+SI++GAD + KL I +A+TD ++ EL+NR Y + Sbjct: 248 IANAAGVKKPISSEGAQIKDDPDYSIAMGADALSSKLAITEAITDPTTVSSELKNRLYNI 307 Query: 306 EQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 +QL + + D+ F PFKY L P P KKD P +A+I++ +A +G +++ GVLL Y + Sbjct: 308 QQLEQIKLGDLQFVPFKYMLKPYEPTKKDAPKRALILVGAAFVGFILSVMGVLLGYMARN 367 Query: 366 RKQDA 370 R++ A Sbjct: 368 RRKTA 372 >UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yersinia RepID=A4TP85_YERPP Length = 383 Score = 251 bits (641), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 137/374 (36%), Positives = 225/374 (60%), Gaps = 7/374 (1%) Query: 1 MSSLNIKQGSDAHFP---DYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLI 57 MS+ + D+ P D+ S S NEIDL + SV++++K ++ + F +GL++ Sbjct: 1 MSNKQARSNLDSPIPNNYDFSNVSSSRNEIDLFEIFSVVFKSKFKIILITLFFLISGLVV 60 Query: 58 SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLL 117 S+ILPQKWTS A++ P Q Q L++ T L VLD+ + + + F + F S L Sbjct: 61 SYILPQKWTSTAIIALPGDEQVQVLDELITNLTVLDIKVDVSANYLLSTFKQNFDSQDLR 120 Query: 118 EEYLRSSPYVMDQLKEAKIDELDLHRAIVA--LSEKMKAVDDNASKKKDEPSLYTSWTLS 175 E+YL ++ Y +K D LD RA++ ++E + +V+ K + E Y + LS Sbjct: 121 EQYLVNTNYFKRLMKNNPEDGLD-KRALIERIVNENISSVNPLKDKTEGENE-YRYYKLS 178 Query: 176 FTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDA 235 ++A T +A+ +L G I+Y++T+V + ++ +++ +K + + +K +N Sbjct: 179 YSASTPTDARDLLQGSINYVNTIVNADVFRKIQRAVDLAKGIGTDKYSMELLKARNNQKV 238 Query: 236 NIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELN 295 I+RL Y+ IA+AAG+KKPVYSNG A+ DDPDF I++G+D + RKLEIEK+V D+A +N Sbjct: 239 KIERLRYASSIADAAGVKKPVYSNGSAISDDPDFPITMGSDALNRKLEIEKSVIDLASIN 298 Query: 296 GELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACG 355 EL NR+ +++L + + +VN PFKY P+ P K+D P +A+IVIL AL+G M + G Sbjct: 299 TELLNRKLYLDKLNRLEIPNVNIVPFKYLQQPTEPTKRDVPKRALIVILFALVGLMGSVG 358 Query: 356 GVLLRYAMASRKQD 369 VL+ + + RK++ Sbjct: 359 FVLVEHFVRERKRE 372 >UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 Tax=Edwardsiella RepID=C5BCN1_EDWI9 Length = 357 Score = 228 bits (580), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 205/347 (59%), Gaps = 1/347 (0%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE 83 +EIDLL+L+ VL++AK ++ V A AG + +LPQKWTS A + P + + + Sbjct: 12 QDEIDLLSLLLVLFKAKWVILGAVLVCALAGFAVKTLLPQKWTSYAELIPAQARELAAMN 71 Query: 84 KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHR 143 +L +LD+ + F++ ++S + EY+ + Y L A D L R Sbjct: 72 SELNQLALLDIKVNASPGWLIERFVQTYESQIVRREYIAQTDY-YKTLAAALSDPLARER 130 Query: 144 AIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKES 203 + +L++K + ++ + E YT + L +A +S+EA +L GYID+++ VV + Sbjct: 131 LLSSLAQKAFTLKNSQLDQATESKEYTYYRLGVSARSSQEAHALLQGYIDFVAARVVDDL 190 Query: 204 LENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAV 263 N++N+L+ EK + +N I+RL+YSL +A AAGI KP+Y NG Sbjct: 191 RYNIKNQLDQTLAREKARYQLTLQNLRNDQQVKIRRLDYSLAVAQAAGISKPLYGNGATF 250 Query: 264 KDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKY 323 KDD DF ISLG +G+ +KL+IEK+ TD+ ELN L+N Q + +L++ H++D+ PFKY Sbjct: 251 KDDDDFPISLGTNGLRQKLDIEKSQTDLTELNAGLKNSQQYIGRLSQVHLSDLKIQPFKY 310 Query: 324 QLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDA 370 + PS+PV+K+ P A+IV+LSA+ G +++CG VL+R+A+ ++ A Sbjct: 311 LMLPSIPVQKEAPKGALIVLLSAMAGLLLSCGAVLMRHAITGQRTAA 357 >UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10 Tax=Yersinia RepID=C4UHK4_YERRU Length = 384 Score = 226 bits (576), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 117/350 (33%), Positives = 213/350 (60%), Gaps = 4/350 (1%) Query: 21 SPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQ 80 S S +EID+ L ++++R+K ++ V F +GL++S+ILPQKWTS +++ P Q Q Sbjct: 24 SSSKDEIDIFELFTIIFRSKLKIILVTLIFLISGLVVSYILPQKWTSTSIIVPAGEEQLQ 83 Query: 81 ELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELD 140 L+K L VLD+++ I + F + F S L E+YL ++ Y +K++ D ++ Sbjct: 84 VLDKITINLAVLDINLGITSNYLLSTFKQNFDSQDLREQYLINTDYFKQMMKDSPEDAIE 143 Query: 141 LHRAIVA--LSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 198 RA++ ++ + +++ K ++ Y + LS++A T+ +A+ +L GYI+++++ Sbjct: 144 -RRAVIENIVNNSIGSINPIKDKSGNDNE-YRYYKLSYSASTAVDARDLLQGYINFVNST 201 Query: 199 VVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYS 258 V + ++ +++ +K + D ++ KN + I+RL Y+ IA+ AGIKKPVYS Sbjct: 202 VNADVNLKIQRAVDLAKGMATDKYSLDLLRAKNSHEVKIERLKYASSIADVAGIKKPVYS 261 Query: 259 NGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNF 318 +G + DDPDF I++GAD + RKLEIEK++TD+ +N +L NR+ +++L + V+ Sbjct: 262 SGSQISDDPDFPITMGADALNRKLEIEKSITDLTTVNADLLNRKLYLDKLNALEIPKVDV 321 Query: 319 TPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQ 368 PFKY P+ P K+D P + +I++L AL G + + G VL+ + ++ R++ Sbjct: 322 VPFKYLQQPTEPTKRDAPKRGLIMVLFALAGLVGSVGFVLVGHFVSERER 371 >UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=Enterobacteriaceae RepID=Q7N0P7_PHOLL Length = 367 Score = 220 bits (560), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 218/363 (60%), Gaps = 9/363 (2%) Query: 10 SDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAA 69 S+ +F Y S ++EIDL L SVL+++K ++ V FA G + + ++PQKW+S+A Sbjct: 12 SEEYFNYY--NSKQDDEIDLFELFSVLFQSKLLIITVTILFAVIGFVAASLMPQKWSSSA 69 Query: 70 VVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMD 129 + P+ + Q L+ TKL VL+L + + +N F+ F S L EEYL ++ Y + Sbjct: 70 SIVKPQLEEIQPLKDILTKLEVLNLQPSVTSSSLYNNFLNNFNSRVLREEYLVNTEYFKN 129 Query: 130 QLKEAKIDELDLHRAIVALSEKMKAVDDN--ASKKKDEPSLYTSWTLSFTAPTSEEAQTV 187 + E+ H +V K V+DN +S K ++ L+F+A T+E+A + Sbjct: 130 LVAESGD-----HSPLVKRKLIEKIVNDNISSSSKAEKDDENGETKLTFSAGTAEDAYNL 184 Query: 188 LSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIA 247 L+GYIDY+S++V ++ + + ++ K + + + D + N +AN++RL ++L IA Sbjct: 185 LNGYIDYVSSVVHEQVKSELSDMVKQKLNYSEGLYSVDLNRVNNIQEANVERLKHALSIA 244 Query: 248 NAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQ 307 N+AGIKKP+ S G +KDDPD+SI+LGAD ++RKL+I + + D ++ +LRNR + +++ Sbjct: 245 NSAGIKKPISSEGAMIKDDPDYSIALGADALQRKLQITEEIKDPTLIDADLRNRLFYIKE 304 Query: 308 LTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRK 367 L V+ VNF PF+Y +P P KD P + +I+I SA +G ++A VL+R+ + SR+ Sbjct: 305 LKALKVDKVNFQPFRYMQAPYEPTAKDSPKRLLILIGSAFLGLILAVVSVLIRHMVRSRQ 364 Query: 368 QDA 370 Q A Sbjct: 365 QAA 367 >UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4SZ47_YERIN Length = 372 Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 116/349 (33%), Positives = 200/349 (57%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE 83 ++EIDL+ + S+L+RAKK ++ +V FA GL++ F LPQKWTS++V+ P + L+ Sbjct: 24 HDEIDLIEIFSMLFRAKKIIILIVVVFALIGLIVGFFLPQKWTSSSVIIAPTYSESMLLD 83 Query: 84 KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHR 143 +L+V +D ID +++ S L + +L+ + Y+ +K+ DE Sbjct: 84 NLLGELKVAGVDSGIDENYLLATYMQFCDSRILRDAFLQQTDYLKMLMKKNPNDEFKKQS 143 Query: 144 AIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKES 203 + +S + NA+ K + L F+A T + A+ +L GY++Y+ Sbjct: 144 LLDVISTNNITTESNANDKSASTKDNNYFRLKFSAQTPDSAKDLLQGYMNYVKESANAYI 203 Query: 204 LENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAV 263 L ++ L +K + E+ + + + +++ D I+RL Y+L IA AAG+KKPVYS+G A+ Sbjct: 204 LFKLQRSLALKLEAEQRLFSLESQRVQSRRDVRIKRLEYALSIAEAAGLKKPVYSSGAAI 263 Query: 264 KDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKY 323 DDPD+SI+LG D +++KL +EK++TD + +LRNR ++ L ++++ FTPFKY Sbjct: 264 LDDPDYSITLGGDALKQKLRVEKSITDPLTTSADLRNRAINIDLLRNIKIDNIEFTPFKY 323 Query: 324 QLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMM 372 P +P KKDGP + +I+++ IG +VA LLR + ++ A + Sbjct: 324 LQKPEVPTKKDGPKRLLILVIFTFIGLIVAIATALLRDGLVRHREIASL 372 >UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q4F4_PROST Length = 372 Score = 214 bits (546), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 115/345 (33%), Positives = 202/345 (58%), Gaps = 5/345 (1%) Query: 18 PLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPV 77 P S ++EIDL+ L +VL R K ++ + + + F LPQKW+S AVV PP Sbjct: 20 PFNSQQSDEIDLMALFAVLLRNKLLIIVITVVITLISIFVVFQLPQKWSSTAVVIPPSSE 79 Query: 78 QWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYV--MDQLKEAK 135 + +++ +L VLD+ I + + FN FI +++S E Y+RS+ Y + + + Sbjct: 80 EIKDINTLSAQLSVLDVKIDLSAQQIFNAFIDQYRSKVNQEAYVRSTNYFKKLSEQVNST 139 Query: 136 IDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 195 E + R + + + D SK+K+ S + L+F APT EAQ +LSGY+ Y Sbjct: 140 DKENEQQRLVNTIISNNIGLKDQ-SKEKNSTS--SDIILTFVAPTPSEAQDLLSGYVRYT 196 Query: 196 STLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKP 255 +T V ++ ++++N + + + E Q+ K +++ D ++RL ++DIA AAG++KP Sbjct: 197 ATKVREQFKKDIQNAIAQQLVYANETFKQEVTKIRSEYDVKVERLKRAIDIAKAAGVRKP 256 Query: 256 VYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVND 315 + S+ + DDPD+ I+LG + +E+KL IE D+A LN +L+ RQ+ ++ L++ ++ Sbjct: 257 IVSDSAIISDDPDYPIALGTEALEKKLAIELQNRDIALLNEDLQIRQHYIKNLSELDIDT 316 Query: 316 VNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR 360 ++F P K+ L+P LP +KD P +I++LSA++G +++C VL R Sbjct: 317 LDFIPAKFMLAPDLPTQKDSPKSVLIIMLSAILGFILSCAYVLSR 361 >UniRef50_UPI000197BC0B ferric enterobactin transport protein FepE n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197BC0B Length = 379 Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 118/341 (34%), Positives = 195/341 (57%), Gaps = 9/341 (2%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE 83 N+EIDL+ L S+L + K ++ + + +LPQKW+S A+V PP + +E+ Sbjct: 33 NDEIDLMALFSILLKHKFLILIFTVVCIVVSVGVVKLLPQKWSSTAIVIPPASEELKEVN 92 Query: 84 KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHR 143 +L VLD+ I + FN F+ +++S E Y+RS+ Y + L E KID D Sbjct: 93 AFKAQLDVLDIPIDLSAQRIFNSFVDQYRSKVNQESYIRSTDYYHN-LAE-KIDPKD--- 147 Query: 144 AIVALSEKMKAVDDNASK----KKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLV 199 ++A + ++ N K K++ S LSFTAP EAQ +L GYI Y ++ V Sbjct: 148 DVIAQQRLVNSIISNDIKIQDLSKEKNSTSNDIVLSFTAPLPTEAQDLLEGYIRYSASKV 207 Query: 200 VKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSN 259 ++ + N + K + E L ++ K + + D ++RL ++DIA AAGI+KP+ S+ Sbjct: 208 RQQLKVEIDNMISEKLIYASESLKREVSKIQTEYDVKVERLKRAVDIAKAAGIEKPIASD 267 Query: 260 GQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFT 319 A+ DDPD+ I+LG + +E+KL IE D+A ++ L+NR+ ++ L + +++FT Sbjct: 268 SVAINDDPDYPIALGTEALEKKLLIETQNRDLALMSENLQNRKIYLDNLQEVTAKELDFT 327 Query: 320 PFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR 360 P K+ L+P LP+ KD P ++IV LSA++G +++C VL R Sbjct: 328 PVKFILTPDLPLHKDSPKSSLIVALSAILGLILSCAFVLSR 368 >UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Providencia RepID=D1P4F6_9ENTR Length = 375 Score = 191 bits (486), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 120/353 (33%), Positives = 196/353 (55%), Gaps = 17/353 (4%) Query: 15 PDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI--LPQKWTSAAVVT 72 PD+ L N+EIDL+ L++VL++ K + ++F L I + LPQKWTS A++ Sbjct: 19 PDFQLQK--NDEIDLMALVAVLFKNK--YLIIIFTVVITALSIGVVKTLPQKWTSEAIII 74 Query: 73 PPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQL- 131 P + +E+ + +L LD +I + +N FI +++S E+Y+RS+ Y L Sbjct: 75 QPTSEETKEISEFAARLSALDFNIDLGSARIYNEFITQYRSKVNQEDYVRSTEYYQSLLA 134 Query: 132 ----KEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTV 187 K +E L I++ S K+K NA +K + S LSFTAPT+ EAQ + Sbjct: 135 KLGDKNDVQEEQRLVNRIISDSIKLKY---NAKEKDSDDS---DIILSFTAPTAIEAQDL 188 Query: 188 LSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIA 247 L+GYI Y ++ V K + N + + + E L D K + D I+RL ++ IA Sbjct: 189 LNGYIRYTASQVRKRFKTEIDNAISRQLIYSVEALKNDTAKIQIAYDVKIERLKRAITIA 248 Query: 248 NAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQ 307 AAGI +P+ + A+ DDPD+ I+LG++ +E KL IE D+A ++ +L+N + ++ Sbjct: 249 KAAGITRPIARDAVAINDDPDYPIALGSEALEEKLAIELKNRDLALISEKLQNSKMHIDN 308 Query: 308 LTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR 360 L +++F P ++ L+P LP+ KD P A+IV L A++G +++C VL R Sbjct: 309 LNGLTTKELDFQPVRFILTPDLPIAKDSPKSALIVALGAILGLILSCAFVLGR 361 >UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aeromonas hydrophila RepID=Q8KNM2_AERHY Length = 362 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 114/358 (31%), Positives = 178/358 (49%), Gaps = 31/358 (8%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQEL 82 S NEIDL L SVLWR K ++ + FA AG+ + + PQ W S + + PP + + L Sbjct: 23 SGNEIDLYELFSVLWRQKIQILMITVVFAIAGIGYALLAPQVWVSQSQIKPPSLQEVESL 82 Query: 83 EKSFTKLRVLDLDIKIDRTEAFNL------FIKKFQSVSLLEEYLRSSPYVMDQLKEAKI 136 E +L ++ I ++FN F+ F S + ++L Y+ + A I Sbjct: 83 ELRVNQL--INAQIPATIFDSFNKAALYGDFVSNFNSFNNKRQFLIEKGYLDMDAEAAGI 140 Query: 137 DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 196 + RA++ K V+ ++ D PS + TLSF A T+ EAQ L YI +I Sbjct: 141 TDDKGKRALL-----RKMVNGISAVALDAPS--DNITLSFGAATATEAQQRLEQYIAFI- 192 Query: 197 TLVVKESLENVRNKLEIKTQFE---KEKLAQ-DRIK--TKNQLDANIQRLNYSLDIANAA 250 + E V E++T ++ K L+Q D IK T QL ++ R YSL I+ AA Sbjct: 193 -----QQQEIVSKSKELETIWQNRIKILLSQYDSIKADTLTQLKDDVSRTEYSLRISRAA 247 Query: 251 GIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTK 310 GI+ PV V+D F+I GA + KL++ K + ++ LN L + + + L Sbjct: 248 GIETPV--ENLNVRDG--FNIEWGAKALAEKLKVLKELKNLELLNPALSDLRLQLSSLRA 303 Query: 311 AHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQ 368 + +F F Y SPS P+ +D P + ++V+L+ L+GGM+ G VL R+A +Q Sbjct: 304 IKLEQQSFQSFSYLASPSEPLSRDKPKRPLVVVLATLLGGMLGIGIVLARHAFRRPEQ 361 >UniRef50_C4K3Z7 Regulator of length of O-antigen component of lipopolysaccharide chains n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K3Z7_HAMD5 Length = 308 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 94/348 (27%), Positives = 167/348 (47%), Gaps = 69/348 (19%) Query: 22 PSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQE 81 PS +EIDL++L+++ ++ K + + F LI + LP+KWTS A++T + Q Q Sbjct: 28 PSTDEIDLIDLLAIFFKNKVKIFFITIFFVIVSALICYKLPEKWTSKAIITYIDDNQLQP 87 Query: 82 LEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDL 141 E KL++ D+ + D+ +LFI+ F S L E+YL ++ Y +K+ + Sbjct: 88 FELLSYKLKLFDISLNFDQKNLLSLFIQLFNSNVLKEKYLVNTSYFQKLIKDHPENRNQF 147 Query: 142 HRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVK 201 I+ K ++ + S K+++ Y +TLS++A T+++AQ +L+GYI+YIS + Sbjct: 148 MLDII----KNIHIEYSKSNKENDFKGYVFYTLSYSADTAKDAQNLLNGYINYISA-IFD 202 Query: 202 ESLEN-VRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNG 260 E L N + NK+ IK L++ +D + G Sbjct: 203 EKLNNKITNKINIKKSV----------------------LSFIID------------NKG 228 Query: 261 QAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTP 320 ++ DD + ++ KL++EK L ++D+ P Sbjct: 229 MSINDDVNLPMA--------KLQLEK---------------------LQSIKLSDIKIIP 259 Query: 321 FKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQ 368 F+Y P+ PVKKD P A I++LS + G MV+ VL+++ ++ R + Sbjct: 260 FEYLQKPNEPVKKDSPQSAFIILLSGMAGLMVSMFYVLVQHYLSQRNK 307 >UniRef50_A1JMR4 O-antigen chain length determinant n=5 Tax=Yersinia RepID=A1JMR4_YERE8 Length = 363 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 95/380 (25%), Positives = 180/380 (47%), Gaps = 44/380 (11%) Query: 8 QGSD---AHFPDYPLASPSNNE-IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQ 63 QG+D + F Y L PSN E +DL+ +IS+++R+ K + V+ F G + F P+ Sbjct: 7 QGNDKKPSPFGKYIL--PSNKEEVDLIEIISIIFRSSKLIFIVLAIFTLVGGGVVFFSPK 64 Query: 64 KWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRS 123 +WTS A+V+ + Q LE + L VL++D+ I + F K + S +L +Y+ Sbjct: 65 EWTSYAIVSVTSDGKMQPLESIESSLSVLNIDLNITADDLLMDFRKYYSSKDMLSKYMSK 124 Query: 124 SPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKD---EPSLYTSWTLSFTAPT 180 EK+ A + K K+ + + ++ L++++ Sbjct: 125 --------------------------EKVNANNFAGLKGKNINSDSDVKGNYILTYSSNL 158 Query: 181 SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 + V +GY++YI+ V + ++ ++ + E+ + +N+ IQRL Sbjct: 159 EYGLKDVFTGYVNYINRKVNDNLNDQIKFTIDTAKKMATEEYNLALQQVENEHKIRIQRL 218 Query: 241 NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN 300 Y+ IA AAG++KP ++ IS+G D + R+LEIE+++TD+ +N +L N Sbjct: 219 EYAASIAKAAGLQKPAIGAFDISASSNNYPISMGYDLLNRQLEIERSITDLTSVNADLLN 278 Query: 301 RQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPG--------KAIIVILS-ALIGGM 351 ++ + ++T ++ F Y PS P++ P K ++ I+S + IG + Sbjct: 279 KKLYLNKITALQPVVIDVPTFNYLQEPSDPLQHSVPSEPILQNSRKGLLTIISFSFIGLI 338 Query: 352 VACGGVLLRYAMASRKQDAM 371 + VL+R+ + R + Sbjct: 339 GSITFVLMRFFVRERHNSRL 358 >UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C7A7_9GAMM Length = 351 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 92/352 (26%), Positives = 165/352 (46%), Gaps = 23/352 (6%) Query: 21 SPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQ 80 + SN+EIDL L+ LW+ K T+ F ++ + Q WTS A VT + Sbjct: 9 NSSNDEIDLAELVKTLWQGKVTIALCSIVFTVCAIVYALTAQQWWTSDATVTRGQYKDTA 68 Query: 81 ELEKSFTKL-RVLDLDIKIDRT----EAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAK 135 + T L V+D+ K++ N FI +F + + +L + + K+ Sbjct: 69 NIRSQVTNLYSVIDVS-KVNNIFESGRLLNEFITEFNAFDNKKAFLEQNSIIEQYAKDDG 127 Query: 136 IDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 195 +++ D + I ++K +D + + +K P++Y LSF A +SE A +L Y +I Sbjct: 128 VNKEDKGKFIAFWAKK---IDASLNDEKKRPNVYK---LSFEARSSEAAHDLLKAYSSFI 181 Query: 196 STLVVKESLENVRNKLEIKTQF---EKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGI 252 + V E+ + +K+ Q KE L +K K + A + + NY+LDIA +A + Sbjct: 182 TDQVRDEAFSVIASKIAHNKQILLASKESL---ELKAKEKQKALLLKTNYALDIARSAKV 238 Query: 253 KKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAH 312 KP+ V F I LG +G++ + I K++ D++ L + + L+K + Sbjct: 239 NKPLAD----VNLTGVFPIQLGTEGLKEQSNILKSMKDLSFFEPSLTQIKIKLGLLSKIY 294 Query: 313 VN-DVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAM 363 ++ D +Y P+ +D P +++I +L L+G M+ VLL+ A Sbjct: 295 LDKDTAMKSVRYLKDIDYPISRDKPKRSLIAVLGFLLGMMLGVAIVLLKSAF 346 >UniRef50_P35272 Chain length determinant protein n=110 Tax=Enterobacteriaceae RepID=WZZB3_ECOLX Length = 325 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 91/341 (26%), Positives = 159/341 (46%), Gaps = 41/341 (12%) Query: 26 EIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKS 85 +IDL++L+ LWR K T++ V + + +KWTS A++T P Sbjct: 17 QIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQP----------- 65 Query: 86 FTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAI 145 D+ A N+ Y +++P V D L+E I A Sbjct: 66 -------DVGQIAGYNNAMNVI------------YGQAAPKVSD-LQETLIGRFS--SAF 103 Query: 146 VALSEKMKAVDDNASKKKDEPSLYTS---WTLSFTAPTSEEAQTVLSGYIDYISTLVVKE 202 AL+E + ++ K EPS+ T+S+ T+E AQ L+ YI + V +E Sbjct: 104 SALAETLDNQEE-PEKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQE 162 Query: 203 SLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQA 262 +++++ + + + ++ L + + Q D I+++ +L AN A + KP Q Sbjct: 163 LEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTQD 222 Query: 263 VKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFK 322 V D F LG++ +E ++ E V N + RQ L++ + V+ ++ ++ Sbjct: 223 VTQDTMFL--LGSEALESMIKHEATRPLVFSSN-YYQTRQNLLD-IDNLDVDKLDIHAYR 278 Query: 323 YQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAM 363 Y + P+LP+++D P KAI +IL+ L+GGMV G VL R A+ Sbjct: 279 YVMKPTLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 319 >UniRef50_A5KZS4 Regulator of length of O-antigen component of lipopolysaccharide chains n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5KZS4_9GAMM Length = 358 Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 91/369 (24%), Positives = 164/369 (44%), Gaps = 36/369 (9%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEP---VQW 79 +N+EIDL L LW K ++ + F + + + + + W+S+A +T +P + Sbjct: 4 ANDEIDLRELFKALWDGKLIIILITAFFTASSIAFALLAQEWWSSSAKITKAQPQNLAAY 63 Query: 80 QELEKSF-----------TKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVM 128 Q+ + F T L +LD +D F FI F S + +L +S Sbjct: 64 QQQVRQFQPVFNIYQEDGTVLVSKELDSLVDSKVLFQRFINAFNSTNNKRSFLDNSAEFQ 123 Query: 129 DQLKEAKIDELDLH----RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEA 184 + + D+ RA A E + + K S Y T++F T E + Sbjct: 124 EFKSSMAVGSSDMSVDEARAFRA--EWFNRISAFTADNKGPNSPY---TINFQTMTKESS 178 Query: 185 QTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRI---KTKNQLDANIQRLN 241 +L+ YI V +++ N++ + K E + Q RI + NQL R Sbjct: 179 FELLAAYILATELNVHEDAFNNLQAIVNGK---RNELVQQKRILESQASNQLLVETARAK 235 Query: 242 YSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNR 301 Y+ IA +AG+ +P+ Q + FSI LGA G++ K++ ++V +++ + L+ Sbjct: 236 YAAQIAKSAGVDRPI----QTGNEKELFSIDLGAKGLDAKVKALESVKNLSVIEPRLQEI 291 Query: 302 QYLVEQLTKAHVN-DVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR 360 + L ++ V F F++ + P+ +D P + +IV+ + IG + G VL+R Sbjct: 292 NAKLTMLNNLDIDRTVEFQTFRFLENVEQPITRDKPKRVLIVLFGSFIGMLFGAGFVLIR 351 Query: 361 YAMASRKQD 369 +A RK+D Sbjct: 352 FAF--RKED 358 >UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio splendidus LGP32 RepID=B7VHQ6_VIBSL Length = 374 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 105/386 (27%), Positives = 179/386 (46%), Gaps = 48/386 (12%) Query: 12 AHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVV 71 ++ P P N+EIDL LW K ++ V F + + + + + W+S A + Sbjct: 9 SYTPQNPPMYIPNDEIDLREFFKALWDGKLIIILVTALFTSSAIGFALLAQEWWSSEAEI 68 Query: 72 TPPE---PVQWQELEKSFTKLRVL-----------DLDIKIDRTEAFNLFIKKFQSVSLL 117 T E V +++ K F + + +LD +D F F+ F S + Sbjct: 69 TNNELQDRVMYEQQVKKFQPVFSIYQSDGSARSSEELDFLVDSQIIFQRFVDLFNSSNNK 128 Query: 118 EEYLRSSPYVMDQLKEAKIDEL--------DLHRAIVALSEKMKAVDDNASKKKDEPSLY 169 + +L S + +E K D D R + +E + + + KKD S Y Sbjct: 129 KAFLDESS----EFQEIKDDSFSSASEVTEDTTRKLY--TEWFERISASLRDKKDTSSPY 182 Query: 170 TSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRI-- 227 L+F A T E + +LS YI + V ++ ++ LE E+ +L Q ++ Sbjct: 183 I---LTFQATTKESSFDLLSSYISFTELQVRNDAFDH----LEALVFGERNELFQQKMVL 235 Query: 228 --KTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDF-SISLGADGIERKLEI 284 K +N+L I+R +L IA AAG++ P+ S G A DF +I LG+ ++ K++I Sbjct: 236 ESKARNRLLVEIERAQSALKIAKAAGVETPLLS-GNA----RDFYAIELGSKALQEKIKI 290 Query: 285 EKAVTDVAELNGELRNRQYLVEQLTKAHVN-DVNFTPFKYQLSPSLPVKKDGPGKAIIVI 343 K+V ++A L L+ ++ L ++ V+F F+Y P +D P +A+IV+ Sbjct: 291 LKSVKNLAVLEPRLQQITAQLDMLDSIKIDRTVDFHAFRYLSDVEQPTTRDKPKRALIVV 350 Query: 344 LSALIGGMVACGGVLLRYAMASRKQD 369 L L+GGM+ VL+R+A RK+D Sbjct: 351 LGTLLGGMLGVAIVLIRFAF--RKED 374 >UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65UU8_MANSM Length = 396 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 95/366 (25%), Positives = 164/366 (44%), Gaps = 35/366 (9%) Query: 21 SPSNN--EIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ 78 SP NN EIDL++LI VLW+ K V+ F FA + +F ++WTS A P+ Sbjct: 30 SPQNNNDEIDLIDLIKVLWQKKLVVILTSFFFALIAAIYAFTAKEQWTSKATTIAPKVAD 89 Query: 79 ---WQELEKSFTK-LRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEA 134 + L + L + + K FN F S ++ E+ S + + E Sbjct: 90 MGYYLSLRSEYANILNIKEFTSKDVVDNLFNNFRVALFSNNMKREFFAQSKWFQNYANEN 149 Query: 135 KIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDY 194 DE + + + +K V KK +SF A T +EAQ VL+ YI++ Sbjct: 150 AKDEDAKQKLLSDILDKSLIVTIPDIKKNPNA---LGINISFAAETPKEAQEVLTEYINF 206 Query: 195 ISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIK--TKNQLDANIQRLNYSLDIANAAGI 252 I+ V+ E + + +IK + +L +D+I+ T++ ++ L +LDIA +AGI Sbjct: 207 INATVLTE--DKIDFLADIKIAIDNLELQKDKIQRDTESVRQVQLENLTTALDIAKSAGI 264 Query: 253 KKPVYSNGQ------AVKD-----------DPDFSISLGADGIERKLEI---EKAVTDVA 292 K+ ++G A+ D D + LG ++ +++ K V V+ Sbjct: 265 KEYSKTSGNVSIPQFALGDAQIPFTDSKLSDGSYLFMLGEKYLQAQVDTLTNNKVVYPVS 324 Query: 293 ELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMV 352 E + L+ L + D T + Y SP P +D P + +++++ A++GG++ Sbjct: 325 FYTIE--KQVSLLNSLEQKANTDSKVTSYYYLTSPDYPTTRDWPKRVLLLLIGAVLGGVL 382 Query: 353 ACGGVL 358 C VL Sbjct: 383 GCLWVL 388 >UniRef50_C9P0E2 Regulator of length of O-antigen component of lipopolysaccharide chains n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9P0E2_9VIBR Length = 383 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 94/376 (25%), Positives = 171/376 (45%), Gaps = 29/376 (7%) Query: 15 PDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPP 74 P P + P ++EIDL L+ LW K ++ FA ++ + + W+S A VT Sbjct: 16 PQLPNSFPVSDEIDLRELLEALWNGKLIIIITTLVFAVGAVVFALNSQEWWSSKAKVTKA 75 Query: 75 EP---VQWQELEKSF-----------TKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 +P +Q+ K F T L +LD +D F F+ F S + ++ Sbjct: 76 QPQDIAAYQQQVKQFQPVFDIYQDDGTVLVSEELDNLVDTEVLFKRFVDAFNSSNNKRDF 135 Query: 121 LRSSPYVM---DQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFT 177 L SS +L+ E + + A + K+D + + +S Sbjct: 136 LDSSSEFRAFKAKLETETETETETEAEAEVTRQLYAAWFQKITVKQDGIGKQSPYDISLQ 195 Query: 178 APTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRI---KTKNQLD 234 + T E + ++L+ YI I + +L N++ ++ K E + Q RI + N+L Sbjct: 196 STTKESSYSLLNEYIGIIKRKAHQNALNNLQAVVDGK---RNELIQQKRILESQAVNKLV 252 Query: 235 ANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAEL 294 I+R +++DIA AAG+ +P+ +N + F I LG +E K++ + V +++ + Sbjct: 253 VEIERAKFAMDIAKAAGVTQPIRTNS----SNEIFGIDLGTKALEAKVKALELVKNLSVV 308 Query: 295 NGELRNRQYLVEQLTKAHVN-DVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVA 353 L+ ++ L ++ + F F++ S P+ +D P + +IVIL L+GG + Sbjct: 309 EPRLQQINAKLDMLEYLKIDRSIRFQTFRFLESVDKPISRDKPKRTLIVILGTLLGGTLG 368 Query: 354 CGGVLLRYAMASRKQD 369 VL+R+A R+QD Sbjct: 369 VAIVLIRFAF-RREQD 383 >UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropneumoniae RepID=B0BR52_ACTPJ Length = 370 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 101/378 (26%), Positives = 168/378 (44%), Gaps = 60/378 (15%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPV- 77 +++ +N EIDL+ L+ VLW+ K + V F + +F +KWTS V P Sbjct: 7 VSNQTNEEIDLIELVRVLWKKKLLIAIVTCIFTALAAVYAFTAKEKWTSQTEVIAPRVTD 66 Query: 78 --QWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAK 135 ++ L K + + + R E LF + S + +++ +L E + Sbjct: 67 ISEYLSLRKEYNLIIGSEFKENEIRNELSELFSRYVLSYDEAIAFFKTTD-TYKKLAETE 125 Query: 136 IDELDLHRAIVAL-SEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDY 194 +E+ L RA+ +E +K + +A KKD +L + +SF S AQT L+ +I + Sbjct: 126 -NEVGLQRAVAEFTTESLKVIKPDA--KKDPNALGSKIAISFDTALS--AQTTLNDFICH 180 Query: 195 IS-----------TLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYS 243 IS +KES+ ++ +EKE + QD+ Q IQ L + Sbjct: 181 ISDTSFNFSKNEFIYWIKESISSLN--------YEKEVIEQDQ---SIQRKVQIQNLETA 229 Query: 244 LDIANAAGIKKPVYSNGQ-------AVKD-----------DPDFSISLGADGIERKLEIE 285 LD+A AGIK+ + AV D D + LG ++ +L+I Sbjct: 230 LDMAKKAGIKEYSSALSSNSSVANLAVSDTKIPLSDSKLADGTYLFMLGEKNLQAQLDIA 289 Query: 286 KAVTDVAELNGELRNRQYLVEQLTKAH-----VNDVNFTPFKYQLSPSLPVKKDGPGKAI 340 K E+ R Q + EQL K + V V F Y SP LP+K+D P + I Sbjct: 290 KT----KEIVYSPRYYQ-IQEQLLKLNTLLPKVEKVTGQSFSYISSPELPIKRDWPKRFI 344 Query: 341 IVILSALIGGMVACGGVL 358 ++++ A+IGG+++ V+ Sbjct: 345 LLLIGAVIGGVLSSLWVI 362 >UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VMI6_ACTSZ Length = 346 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 100/362 (27%), Positives = 173/362 (47%), Gaps = 46/362 (12%) Query: 14 FPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTP 73 F ++P +NEIDL++LI VLW+ K TV+ F FA + +F +KWTS A V Sbjct: 3 FSNHPSIPQQSNEIDLIDLIKVLWKKKLTVILSAFLFAIIAAIYAFTATEKWTSTAEVIA 62 Query: 74 PEPVQWQELEKSFTKLRVLDL----DIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMD 129 P V + KLR + DI +D T + +L+ KF ++ + R+ D Sbjct: 63 PTGVDMGAYGNA--KLRFAQIAKLPDITVD-TVSKSLY-AKFDRLAFSQNERRNFFSQSD 118 Query: 130 QLKE--AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTV 187 + K DE + + AL+ + AV KK + ++ + +SF+A T E AQ Sbjct: 119 EYKGLIQDQDEKAQRKILSALTTEYTAVVRPDPKKNAD--MFGN-KISFSAQTPENAQKT 175 Query: 188 LSGYIDYISTLVVKESLENVRNKLEIKT-------QFEKEKLAQDRIKTKNQLDANIQRL 240 L+ ++D+I+ +++ E +N+ ++K EK+++ + + K Q N + L Sbjct: 176 LAQFVDFIN----EKAFELDKNEFQMKIAQQIDNLTNEKKEIEESLVVQKEQNTENAKPL 231 Query: 241 N---YSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIER-KLEIEKAVTDVAELNG 296 N SL N + Q DP ++ + D R +L I +T ++N Sbjct: 232 NAIPQSLPQTNL----NSASQSSQDSALDPAMALLVYGDDYSRMQLRI---IT--GQIN- 281 Query: 297 ELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGG 356 +L+ Q V+ LT + YQ SPS PV++D P + I++++ A++GG++ C Sbjct: 282 QLKALQNAVKGLTAQT--------YTYQASPSYPVQRDWPKRVILLLVGAVLGGILGCVW 333 Query: 357 VL 358 V+ Sbjct: 334 VI 335 >UniRef50_A7JUL8 O-antigen chain length determining protein n=2 Tax=Pasteurellaceae RepID=A7JUL8_PASHA Length = 375 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 105/377 (27%), Positives = 170/377 (45%), Gaps = 47/377 (12%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQE- 81 S++EIDL+ + LW K ++ F + +F ++WTS A V P+ + E Sbjct: 11 SSDEIDLIEIFRALWDKKWWIVITTFITTLLAGIYAFTAKEQWTSKATVIAPKLTELGEY 70 Query: 82 --LEKSFTK-LRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 + + +++ LRV +D FN F + QS E+ +S V L E K DE Sbjct: 71 LNVRREYSRILRVDPVDPNALSASLFNNFNRLAQSQDTKNEFFITSN-VYKTLAEGK-DE 128 Query: 139 LDLHRAIVALS-EKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 197 + LS E + +A KKD ++ TLSF+A T EAQ L + +I++ Sbjct: 129 QGQRTVLSNLSNENTSFIIPDA--KKDPNAI--GRTLSFSAETPMEAQDTLGKLVQFINS 184 Query: 198 LVVKESLENVRNKLE---IKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIK- 253 LE+ + Q+EK + +D K+ ++ LN + + A AGIK Sbjct: 185 KAFAVELEDFLVDFQNVLTALQYEKSLIQEDLSVNKS---VQLENLNKAYETAQKAGIKE 241 Query: 254 ------KPVYSNGQAVKDDPDFSIS------------LGADGIERKLEI--EKAVT---D 290 + SN A D S+S LG ++ ++++ EK V Sbjct: 242 YSKAFNQSDASNIAAALSDTKISLSDSKLADSSYLFMLGEKYLKAQIDVANEKGVVYPPR 301 Query: 291 VAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGG 350 +++ +L+ + L E+ TK V F YQ SP PV KD P K II+++ A IG Sbjct: 302 YYQIDYQLKQLEPLFEK-TKT----VKTQTFSYQASPDYPVIKDKPKKVIILLIGAFIGL 356 Query: 351 MVACGGVLL-RYAMASR 366 M++C ++L Y +AS+ Sbjct: 357 MISCLSIILTHYLLASK 373 >UniRef50_Q04866 Chain length determinant protein n=30 Tax=Salmonella enterica RepID=WZZB_SALTY Length = 327 Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 93/347 (26%), Positives = 160/347 (46%), Gaps = 37/347 (10%) Query: 26 EIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKS 85 +IDL+ L+ LWR K T++ V + I +KWTS A++T P+ Q + Sbjct: 17 QIDLIELLLQLWRGKMTIIVAVIIAILLAVGYLMIAKEKWTSTAIITQPDAAQVATYTNA 76 Query: 86 FTKLRVLDLDIKIDRTEAFNLFIKKFQSV-SLLEEYLRSSPYVMDQLKEAKIDELDLHRA 144 L + KI +A FI +F S S L E V+D K Sbjct: 77 LNVLYGGNAP-KISEVQAN--FISRFSSAFSALSE-------VLDNQK------------ 114 Query: 145 IVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESL 204 E+ K + + K + P ++S+ + T+E AQ L+ YI + V KE Sbjct: 115 -----EREKLTIEQSVKGQALP-----LSVSYVSTTAEGAQRRLAEYIQQVDEEVAKELE 164 Query: 205 ENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVK 264 ++++ + ++T+ +E L + + Q D I+++ +L A+ A I +P Q V Sbjct: 165 VDLKDNITLQTKTLQESLETQEVVAQEQKDLRIKQIEEALRYADEAKITQPQIQQTQDVT 224 Query: 265 DDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQ 324 D F LG+D ++ ++ E A + + +Q L++ + V ++Y Sbjct: 225 QDTMF--LLGSDALKSMIQNE-ATRPLVFSPAYYQTKQTLLD-IKNLKVTADTVHVYRYV 280 Query: 325 LSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAM 371 + P+LPV++D P AI ++L+ L+GGM+ G VL R A+ S K A+ Sbjct: 281 MKPTLPVRRDSPKTAITLVLAVLLGGMIGAGIVLGRNALRSYKPKAL 327 >UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae RepID=A6ADU0_VIBCH Length = 377 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 94/392 (23%), Positives = 188/392 (47%), Gaps = 37/392 (9%) Query: 1 MSSL-NIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISF 59 MSSL N +P+Y A P+N+EIDL L LW+ K ++ F A + + Sbjct: 1 MSSLANTPPVQPPQYPNY--AYPANDEIDLKELFLALWQGKWLIILCTLVFTVATITYAL 58 Query: 60 ILPQKWTSAAVVTPPE---PVQWQELEKSFTKLRVL-----------DLDIKIDRTEAFN 105 + + W++ A V+ P+ +Q+ K + L + LD ID F Sbjct: 59 TVQEWWSAKAKVSQPQLQDIASYQQAVKRYQPLFDVYQEDGTIIISETLDSLIDAEVIFK 118 Query: 106 LFIKKFQSVSLLEEYLRSSPYVMDQLKEA--KIDELDLHRAIVALSEKMKAVDDNASKKK 163 F+++F + ++ ++ ++ K+ K D L E++K V + +K+ Sbjct: 119 RFLQEFNANGTKLRFMETNTTFLELRKDLLNKDDPQRLQAFYEQWFERIKGV--SIGEKE 176 Query: 164 DEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLA 223 D ++TLSF + + +L Y+ +++ ++ ++ +++ + L K +++ Sbjct: 177 D-----GAFTLSFQSVDKISSLALLREYVQFVNQIINQQLKDDLNSILVAKYGELRQQET 231 Query: 224 QDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLE 283 + +T+ +L ++R Y+L+IA AA IK+PV Q + + F+I++G+ ++ K++ Sbjct: 232 NLQQQTQLRLQVELERTQYALNIAEAADIKQPV----QNLGEQEIFAINIGSRALKAKVD 287 Query: 284 IEKAVTDVAELNGEL-----RNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGK 338 K++ D++ L + Q+ +E L+ +N F Y P+ +D P + Sbjct: 288 ALKSIKDLSVFEPRLAILQTKLSQFGLETLSAGTKWSIN--SFYYLEQAKQPLSRDKPKR 345 Query: 339 AIIVILSALIGGMVACGGVLLRYAMASRKQDA 370 A+IV+L +GGM+ VL+R+A S ++ A Sbjct: 346 ALIVVLGGFLGGMLGVAIVLVRFAFRSEEKRA 377 >UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L7N8_TOLAT Length = 372 Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 96/387 (24%), Positives = 173/387 (44%), Gaps = 53/387 (13%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 M++ Q ++ +P YP+ N+EIDL+ L LW+ K + V A + +F Sbjct: 1 MNNKEFPQQANMPYP-YPMPYQDNDEIDLVELFRTLWKQKAKIALVTAATTLVAGIYAFT 59 Query: 61 LPQKWTSAAVVTPPEPVQ-------WQELEKSFTKLRVLDLDIKIDRT--EAFNLFIKKF 111 + WTS AV P+ + Q+L ++ K + + + D+ E F F K+ Sbjct: 60 AEEVWTSKAVFDAPKLEEIGSYYEFTQQLRRTLQKPTIGAITLIPDQITKEVFTEFQKQT 119 Query: 112 QSVSLLEEYLRSSPYVMDQL--------KEAKIDELDLHRAIVALSEKMKAVDDNASKKK 163 S+ L E+ S Y + + KE K+D+L + + I + +D+ K Sbjct: 120 NSIDLRREFWSQSDYYHNLVINIKSEKDKEKKLDDL-IEKNITVV-----PIDEQKVK-- 171 Query: 164 DEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRN--KLEIKTQFEKEK 221 + S +LS T+ A+ +L Y+D ++ V K ++ K E+ ++K Sbjct: 172 -----FPSVSLSVNDATT--AKELLIQYVDKLNAKVWKSKSTELKTILKEEVAELENEKK 224 Query: 222 LAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYS--NGQAVKDDPDFSISLGADGIE 279 L + R +T +I R S +A A IK+ S G A D LG ++ Sbjct: 225 LLEFRAETDRNNSIDIIRKAKS--VAEKANIKELNLSAMQGNANVSSRDMLFFLGTKALD 282 Query: 280 RKLE--IEKAVTDVAELNGELRNRQYLVE----QLTKAHVNDVNFTPFKYQLSPSLPVKK 333 +++ + K VT + R Y VE +L K V+ ++Y +PS P+ + Sbjct: 283 AQIDNLVNKPVT--------MPVRYYEVERMLTELKKLPEFKVDIKSYRYLQAPSEPLTR 334 Query: 334 DGPGKAIIVILSALIGGMVACGGVLLR 360 DGP + +I+++S L G +++C +L++ Sbjct: 335 DGPKRTLIIVVSFLFGMILSCIAILIK 361 >UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0GV84_VIBMI Length = 379 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 89/371 (23%), Positives = 173/371 (46%), Gaps = 36/371 (9%) Query: 13 HFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVT 72 H YP +N IDL L S LW+ K T++ +F F A + S + W+S A VT Sbjct: 11 HPNQYPSYYSGDNGIDLRELFSALWKGKWTIITSMFIFTFAAITYSLTAQEWWSSKATVT 70 Query: 73 PP---EPVQWQELEKSFTKLRVLD-----------LDIKIDRTEAFNLFIKKFQSVSLLE 118 P + +Q++ + L L LD ID F F+++F + Sbjct: 71 QPLLQDIAGYQKVVQRSQPLFDLHQQDGTIIVSEALDSLIDPEVIFKRFLQEFNANGTKR 130 Query: 119 EYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 176 +++++ + KE + + L E++K V KK+E +TLSF Sbjct: 131 RFMQTNATFLALKKELLNQDNPESLQDFYEQWFERIKGV---PVGKKEE----NIFTLSF 183 Query: 177 TAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDAN 236 + + + T+LS Y+ +++ + ++ ++ N L K +++ R + + +L Sbjct: 184 QSVDKDSSLTLLSQYVQFVNQTINQQLNNDLFNTLVAKYGEIEQQENYLRQQAQLRLQVE 243 Query: 237 IQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNG 296 ++R Y+L IA AA I +P+ Q + + F+I++G+ ++ K++ K++ +++ + Sbjct: 244 LERTQYALAIAEAAAITQPL----QNLGEQEIFAINIGSRALKAKVDALKSIKNLSVFDP 299 Query: 297 ELRNRQYLVEQLTKAHVNDV------NFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGG 350 +L L +L++ +N++ + F Y P + +D P +A+I +L L GG Sbjct: 300 QLA---ILQSKLSQFDLNELSTDIKWSINGFYYLDQPEQALTQDNPKRALITVLGFLFGG 356 Query: 351 MVACGGVLLRY 361 M+ VL R+ Sbjct: 357 MIGVVIVLGRF 367 >UniRef50_A1SRR6 Chain length determinant protein-like protein n=2 Tax=Psychromonas RepID=A1SRR6_PSYIN Length = 347 Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 66/281 (23%), Positives = 134/281 (47%), Gaps = 31/281 (11%) Query: 104 FNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKID-------ELDLHRAIVALSEKMKAVD 156 F FI F S + +L ++P + L+ +I + + ++ L+ M ++ Sbjct: 83 FRNFINAFNSTINKKHFLETNPAFLAYLQVKQITVPSKGSAQESRQQYLIVLNNWMNKIN 142 Query: 157 DNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLE-------NVRN 209 + + + E +L SF + T E + +L+ YI +I V + LE + +N Sbjct: 143 ASLNSQTSELAL------SFRSATKESSAELLNEYILFIGENVRENQLEKFLLFIDSAKN 196 Query: 210 KLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDF 269 +L++ Q ++K + +L +Q+ Y+ IA+ +G+ V K+ F Sbjct: 197 ELQVSLQMTEQK-------ARRELAVLLQKTEYAYQIASHSGL---VEYQANLNKEGELF 246 Query: 270 SISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVND-VNFTPFKYQLSPS 328 I+LG ++ K+++ K++ D++ L L ++ L K +D +FTP++Y Sbjct: 247 QINLGEKALKAKIDVLKSIQDLSVLEPSLAIMTITLDALNKLEFSDNSSFTPYRYLEVVE 306 Query: 329 LPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQD 369 P+ + P +A+IVIL+ L+ GM++ L+ Y M ++Q+ Sbjct: 307 PPLNRSAPKRALIVILATLLAGMLSIFIALVHYFMTKKEQN 347 >UniRef50_Q3YTC2 O antigen chain length determinant protein n=5 Tax=Enterobacteriaceae RepID=Q3YTC2_SHISS Length = 346 Score = 77.4 bits (189), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 84/343 (24%), Positives = 146/343 (42%), Gaps = 17/343 (4%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPP---EPVQW 79 + +EIDL L+ LW+ K ++ V + +F ++WT+ + P E + Sbjct: 4 AEDEIDLFELLGTLWKKKWVILCVTLLTTGLAAVYAFTAKEQWTAKTYIQAPRIAELGSY 63 Query: 80 QELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDEL 139 + +++ ++ LD F+ I +S ++L S+ Y KE Sbjct: 64 LKFHQAYARILNQPLDTNALANGLFSDLILIAESPDTKVKFLESTEYYK---KETNNLST 120 Query: 140 DLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLV 199 + + I + K + K+K S Y + +A +++EA +L GY+ ++ Sbjct: 121 EQDKKIWLAEQANKGLVITPPKEKGNTSYYI---IQASADSAQEAYKLLQGYLKNVNNQA 177 Query: 200 VKESLENV-RNKLEIKTQFEKEKLAQDRIKTKNQLD--ANIQRLNYSLDIANAAGIKKPV 256 V SL+ +N + KE + D + +LD A+IQR L A AGI Sbjct: 178 VTLSLDEFGQNVNTLLVNLNKEIIDIDFQRKSEKLDQIAHIQR---DLTTAEQAGIIDYR 234 Query: 257 YSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDV 316 S G + LG + +L+ K + RQ +++L +++ Sbjct: 235 SSKGGFDNAQSSYKFLLGEKLLSAELKATKDAPIIYPFRYYEVKRQ--IDELEGMLRDNI 292 Query: 317 NFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLL 359 ++YQ+ PS PV KD P KA+I+IL AL G M A G L+ Sbjct: 293 QAQAYRYQMKPSEPVIKDKPNKALILILGALPGAMFAIVGTLV 335 >UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=174 Tax=Enterobacteriaceae RepID=WZZE_ECO57 Length = 348 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 80/363 (22%), Positives = 154/363 (42%), Gaps = 39/363 (10%) Query: 14 FPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTP 73 P P A + NE+D+ L LW K ++ + AFA L +F Q+W+S A+ Sbjct: 5 MPGKP-AEDAENELDIRGLFRTLWAGKLWIIGMGLAFALIALAYTFFARQEWSSTAITDR 63 Query: 74 PEPVQWQELEKSFTKLRVL-DLDIKIDRT---------EAFNLFIKKFQSVSLLEEY-LR 122 P L +++ + L +LD++ + EA+ F+ + S E+ L+ Sbjct: 64 PTV---NMLGGYYSQQQFLRNLDVRSNMASADQPSVMDEAYKEFVMQLASWDTRREFWLQ 120 Query: 123 SSPYVMDQLKEAKIDELDLHRAIVAL----SEKMKAVDDNASKKKDEPSLYTSWTLSFTA 178 + Y + +K D L I + + +AV+D ++ A Sbjct: 121 TDYYKQRMVGNSKADAALLDEMINNIQFIPGDFTRAVND---------------SVKLIA 165 Query: 179 PTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQ 238 T+ +A +L Y+ + S + ++ +T K ++ + K D + Sbjct: 166 ETAPDANNLLRQYVAFASQRAASHLNDELKGAWAARTIQMKAQVKRQEEVAKAIYDRRMN 225 Query: 239 RLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISL-GADGIERKLEIEKAVTDVAELNGE 297 + +L IA I + + ++ PD + L G ++ +LE +AV +L+ + Sbjct: 226 SIEQALKIAEQHNISRS--ATDVPAEELPDSEMFLLGRPMLQARLENLQAVGPAFDLDYD 283 Query: 298 LRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGV 357 +NR ++ L D F ++Y +P PVK+D P +A ++I+ ++GG++ G Sbjct: 284 -QNRA-MLNTLNVGPTLDPRFQTYRYLRTPEEPVKRDSPRRAFLMIMWGIVGGLIGAGVA 341 Query: 358 LLR 360 L R Sbjct: 342 LTR 344 >UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C5S1B1_9PAST Length = 378 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 103/384 (26%), Positives = 163/384 (42%), Gaps = 49/384 (12%) Query: 23 SNNEIDLLNLISVLWRAKK-TVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPV---Q 78 +N+EIDL+ L+ LW K +++ V A AG+ +F ++WTS A V P+ Sbjct: 10 ANDEIDLIELVKTLWDKKIWIIISTVICTAIAGIY-AFTAKEQWTSKAEVIAPKVTDLGS 68 Query: 79 WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 + + K + ++ + D F F +S+ E+ S V +L E K DE Sbjct: 69 YFNVRKEYARILGQEFDAGALANGLFAKFNLLSESLDERNEFFVQSD-VYKKLIEGK-DE 126 Query: 139 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 198 + L+ + A+ KK EP L +SF A T E+AQ L +I + S Sbjct: 127 KSQRSILSNLTRENIAITKPDPKK--EPDL-IGRRISFLAETPEDAQLTLEKFIAFTSQS 183 Query: 199 VVKESLENVRNKL-EIKTQFEKEKLAQDRIKTKNQLDANIQR------LNYSLDIANAAG 251 + LEN L E+ + EK TK + D +IQR L+ +L+IA AG Sbjct: 184 AYQLELENFLINLNEVLSDLTYEK-------TKFERDLSIQRSVQLENLHNALNIAKEAG 236 Query: 252 IKKPVYSNGQAVKDDPDFSISLG-----------ADGIERKLEIEK---AVTDVAELNGE 297 IK + G A D +I++ +DG + EK A DV G Sbjct: 237 IKDYAKAFG-ATNDTALQAIAMSETKIPLSDSKLSDGTYLFMLGEKYLQAQIDVLTQKGV 295 Query: 298 LRNRQYL-------VEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGG 350 + +Y + V + F YQ SP PV KD P + I++ A+ GG Sbjct: 296 IYPPRYYQVSELLKELEPLLVKVKEAKANAFSYQASPDYPVVKDKPKRLFILLGGAVAGG 355 Query: 351 MVACGGVLLRYAMASRKQDAMMAD 374 +++ +++ Y KQ+ + D Sbjct: 356 LLSALVLIMNYLF---KQNRRLED 376 >UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 Tax=Photobacterium angustum S14 RepID=Q1ZRK1_PHOAS Length = 347 Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 82/337 (24%), Positives = 146/337 (43%), Gaps = 33/337 (9%) Query: 30 LNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKL 89 L + W+ K ++ FA AG+ ++ WTS AV+T + + ++ L Sbjct: 21 LEWVLCFWQKKFLIVITTLIFAVAGVSYAYYAQSWWTSTAVITTNKARDIRIFSENIDNL 80 Query: 90 RVLD-----LDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRA 144 V + +D F+ F + + E+L + + K L R Sbjct: 81 YVNSGVGGLVSQALDEKRLLRTFVNYFNAYNNKLEFLEGNKSIKSDFINEKEKHDFLQRF 140 Query: 145 IVAL-SEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKES 203 I + SEK+ D LY+ LS+TA +S ++ +LS YI++I+ V KE Sbjct: 141 IKRINSEKVG---------NDSQVLYS---LSYTATSSIKSHDLLSEYINFINEKVNKEV 188 Query: 204 LENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAV 263 + ++++ + + + E +I + + A I + +Y+L IA AA +KKP+ G + Sbjct: 189 VSSLKSDINNQMKRLTESTVSLKINAEVKQHAEILKTDYALKIAEAADLKKPIAELGNS- 247 Query: 264 KDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVN------ 317 F+I +G DG++ K I D+A L Q + Q + D+N Sbjct: 248 ---QIFNIEIGTDGLKEKSLILHNSKDLA-----LFEPQIDIAQAQINFLKDINLEKAKP 299 Query: 318 FTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVAC 354 F +++ S P+ + P K II++ S + G V C Sbjct: 300 FNAYRFVKDVSYPMSQAYPSKLIIILFSIIFGFSVGC 336 >UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycetemcomitans RepID=Q9JRS3_AGGAC Length = 369 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 91/380 (23%), Positives = 159/380 (41%), Gaps = 55/380 (14%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQE-- 81 N+EIDL+ LI VLW + ++ F + F ++WTS A + P + + Sbjct: 8 NDEIDLVELIKVLWNKRLWIILFSLFFTTIAGIYVFTAKEQWTSKAEIIAPRITELGDYF 67 Query: 82 -LEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELD 140 ++K + ++ + D + F F +S+ +++ S + + E K E + Sbjct: 68 LVKKEYARILGSEFDASMTANNLFGQFNLLSESLDERKKFFEKSDFYKKE-SEGK-SERE 125 Query: 141 LHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVV 200 + + L K A+ +KK P L + +SF A T EAQ VLS +I ++ Sbjct: 126 KLQILFDLMTKNIAIKKPDTKKY--PDLIGN-QISFYAETPIEAQNVLSKFISTVNISAY 182 Query: 201 KESLENVR---NKLEIKTQFEKEKLAQD-RIKTKNQLDANIQRLNYSLDIANAAGIKKPV 256 + L+ N++ +EK K +D RI QL + L +L+IA AGIK+ Sbjct: 183 QIELDKFLTDFNEIIADLNYEKIKFERDLRIHKSVQL----KNLESALNIAKEAGIKE-- 236 Query: 257 YSNGQAVKD-----------------------DPDFSISLGADGIERKLEIEKAVTDVAE 293 YS ++ D D + LG + KA DV + Sbjct: 237 YSKSFSIADPQLVLQAIAVSEAKVPLSDSKLSDSTYLFMLGETYL-------KAQIDVLK 289 Query: 294 LNGELRNRQY--LVEQLTKAH-----VNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSA 346 N + +Y + QL++ V F YQ SP PV +D P K +I+ + Sbjct: 290 NNNIIYPPRYYQVSSQLSELEPLLIKAKQVKANAFSYQASPDYPVVRDKPKKLLILSIGF 349 Query: 347 LIGGMVACGGVLLRYAMASR 366 ++G ++ +L R ++++ Sbjct: 350 ILGLILGSIYILFRKLVSNK 369 >UniRef50_P44063 Uncharacterized protein HI0866 n=7 Tax=Haemophilus influenzae RepID=Y866_HAEIN Length = 207 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 103/209 (49%), Gaps = 21/209 (10%) Query: 174 LSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKT---QFEKEKLAQDRIKTK 230 ++F+A T + AQ+VL+ Y++++S + ++ + + ++ +F KE++ ++ + K Sbjct: 8 ITFSAETPKYAQSVLTEYVNFVSQYSLNQTNQEFKQGFNLRLDELRFSKEQIEENLTEEK 67 Query: 231 NQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKD----DPDFSISLGADGIERKLEIEK 286 ++ L +LDIA AGIK +S G + D D + L ++ +L+I K Sbjct: 68 K---VQVENLTNALDIAKKAGIKD--FSRGNNISDSKLADGTYLFILAEKYLQAQLDIAK 122 Query: 287 AVTDVAELNGELRNRQY-----LVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAII 341 V N + +RQ L QL V DV + Y SP PV KD P +++I Sbjct: 123 NTPVVYPANYYITDRQLFKLNKLASQL--ELVEDVK--TYYYLSSPDYPVVKDNPKRSLI 178 Query: 342 VILSALIGGMVACGGVLLRYAMASRKQDA 370 + + +IG ++ +LL + + K+ + Sbjct: 179 LAIGFIIGILLPTFFILLGSVIQTNKKQS 207 >UniRef50_Q1Z8B9 Ferric enterobactin transport protein n=1 Tax=Photobacterium profundum 3TCK RepID=Q1Z8B9_PHOPR Length = 349 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 74/352 (21%), Positives = 154/352 (43%), Gaps = 28/352 (7%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE 83 N+EI + + L +K ++ + +F + W+S+ ++T L Sbjct: 11 NSEIGINFFMQCLQNSKWLLILCSLLTGIVASIYAFNSQEWWSSSEIITEANYNDLSSLR 70 Query: 84 KSFTKLRVL-----DLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 + L ++ L+ + F FI ++ E++ S+ + ++ K++E Sbjct: 71 NDVSPLFIVAAKTEKLEKIFSPNKIFIDFINEYNKPLTKSEFILSNDLLKIKMSNQKLEE 130 Query: 139 LDLHRAIVAL-SEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 197 A V S K+K KK+ + ++ L F + ++EE+Q +LS Y ++ Sbjct: 131 EQQKNAFVKFWSNKIKY------KKQGD-----NFKLIFESNSAEESQLLLSQYSKFVHE 179 Query: 198 LVVKESLENVRNKL-EIKTQFE-KEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKP 255 V +++V++++ + + E K + + +K +L+ I +L +L + A+ P Sbjct: 180 RVKNNIIDDVKSRIVSLVSLLEVKNDVLNEAVKANIKLEVEITKL--ALSVTKASNFSNP 237 Query: 256 VYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVN- 314 + + V D I LG+ + K ++ AV D + + E+ + ++ L VN Sbjct: 238 I----ENVNGDNFLPIELGSKALSEKYKVLSAVDDFSIFDPEIHRIKSEIKMLNDIDVNY 293 Query: 315 DVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASR 366 ++ F Y LP+ D P +++IVI+ IG + C V+ Y +SR Sbjct: 294 EMEFNVIGYVNVAELPLNSDKPKRSLIVIIGLFIGLFLGC--VISVYRESSR 343 >UniRef50_Q2BJF5 O-antigen chain length regulator n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJF5_9GAMM Length = 353 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 86/375 (22%), Positives = 148/375 (39%), Gaps = 55/375 (14%) Query: 13 HFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVT 72 H P++PL N+ IDL L LWR+K ++ + G SF+ + S+AV+ Sbjct: 5 HSPEHPL----NDHIDLFFLFLQLWRSKLLILGITALITLCGAAYSFLSTPIYQSSAVLA 60 Query: 73 PPEPVQWQELEKSFTKLRVL----DLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVM 128 P E+ K T L+ + + T+ F FI S +L S P ++ Sbjct: 61 SPSESDLIEIRKIHTLLQQIIYSETASEEASTTDIFGQFISALNSNRYKNSFL-SKPELL 119 Query: 129 DQLKEAKIDEL----DLHRAI-VALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEE 183 D + +L + +RA+ V L + + S + P L +SW Sbjct: 120 DHFRNDNTTQLQARKEFNRALKVTLPDTEEINHITISLRTKSPELSSSW----------- 168 Query: 184 AQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYS 243 L+ YI + KE N++ ++ + + + L I+ + + Sbjct: 169 ----LNEYISFAHQQFSKELTNNLQARIHAAQNNLLLTIQSKKANYHSNLIEEIKSIEEA 224 Query: 244 LDIANAAGIKKPVYS----NGQAVKDDPDFSISLGADGIERKLEI----EKAVTDVAELN 295 L IAN G+ P+ + Q + D LG+ + +L EK + ++ L+ Sbjct: 225 LIIANEIGLVNPLKTETNFGKQHIIDQMRGIYRLGSKSLNAELNALKAREKNLDNIPGLS 284 Query: 296 GELRNRQYLVE-----QLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSA---- 346 E + L +L A + D+ P +P P++ P K II++LS Sbjct: 285 DEKLKLELLANIDLDSKLISAMILDLAAEP-----APK-PIE---PRKTIIILLSIVAGL 335 Query: 347 LIGGMVACGGVLLRY 361 LIG M G L+R+ Sbjct: 336 LIGIMTVLAGNLVRH 350 >UniRef50_C3K6I8 Conserved hypothetical chain length determinant protein n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K6I8_PSEFS Length = 218 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPE 75 A P ++EIDL+ LI LW +K T++A A A L +S P++WT++ +T P Sbjct: 9 ARPHDDEIDLIPLIQTLWNSKITIIATTVVGAVAALTLSATSPEQWTASTYITKPS 64 >UniRef50_A4C8G6 OtnB protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C8G6_9GAMM Length = 308 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 85/361 (23%), Positives = 146/361 (40%), Gaps = 79/361 (21%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ 78 +A+ N+EI+L LIS LW+ K ++ +V + + + LP + S ++T + Q Sbjct: 4 VANKLNDEIELTQLISALWQGKILIVGLVILCSACSVFYALSLPNIYKSTVLLTAADESQ 63 Query: 79 ---WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAK 135 +L F L + L +L E ++S ++ + Sbjct: 64 NSGMSKLNSQFGGLAAM---------AGVKLGSSGVDKSALALEIIKSHAFIAEF----- 109 Query: 136 IDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS----WTLSFTAPTSEEAQTVLSGY 191 ID+ +L I+A D +K +PS+Y + W P E + Sbjct: 110 IDKNNLKPLIMAADN----WDLGTNKVSYKPSVYNAESKVWVREAKIPRLPEPSS----- 160 Query: 192 IDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLN--YSLDIANA 249 E+ +F KE L+ + K N + +I ++ + DIA+ Sbjct: 161 -------------------QEVHEKFIKEHLSINSDKKSNLVSISIFHVSPYVAKDIAD- 200 Query: 250 AGIKKPVYSNGQAVKDDPD--------FSISLGADGIERKLEIEKAVTDVAELNGELRNR 301 K V N + KDD D + +LG + AV D+ ++ EL + Sbjct: 201 ---KLVVAINAKIKKDDIDEANKSIAYLTSALG----------QTAVADMQKIFYELIEQ 247 Query: 302 QYLVEQLTKAHVNDVNFTPFKYQLSPSLPVK-KDGPGKAIIVILSALIGGMVACGGVLLR 360 Q EQ TK N + FK + P++ + KD P +AII I +++G ++ CG VL+R Sbjct: 248 Q---EQ-TKMLANARDQYVFKV-IDPAVVAELKDSPKRAIICIFGSVLGFLLGCGFVLIR 302 Query: 361 Y 361 Y Sbjct: 303 Y 303 >UniRef50_Q02PW5 O-antigen chain length regulator n=19 Tax=Pseudomonas aeruginosa RepID=Q02PW5_PSEAB Length = 360 Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 50/233 (21%), Positives = 92/233 (39%), Gaps = 17/233 (7%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE 83 NEID + LI LW K V ++ F A +F+ + + + PP Sbjct: 13 RNEIDFIELIQGLWSQKWLVFSLTFLGAVLAGSYAFLSKPVYEARVALLPPSLSDV---- 68 Query: 84 KSFTKLRVLDLDIK-IDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLH 142 F R D + ++ +++F + QS ++ R + ++ ID L Sbjct: 69 AGFNIARGRDSGLPPFTVSQVYSVFTRNLQSEGTRRQFFREVYLPSLEERKGSIDGL--- 125 Query: 143 RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKE 202 +A D+ S + L +T+ E+A Y D + + E Sbjct: 126 ---------YRAFSDDVSVNRPSKDLPERYTVILNRQDPEQAAKWAKQYADLAALRSMDE 176 Query: 203 SLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKP 255 N + +LE+K++ +++ R K + + I RL +L +A A G++KP Sbjct: 177 MRGNAQRELEVKSRNILQQIDTLRQVVKERRNDRIVRLKEALQVARAVGVEKP 229 >UniRef50_Q8KN75 Wzz n=1 Tax=Pseudomonas aeruginosa RepID=Q8KN75_PSEAE Length = 344 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 75/357 (21%), Positives = 143/357 (40%), Gaps = 27/357 (7%) Query: 18 PLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACA-GLLISFILPQKWTSAAVVTPPE- 75 P P + +IDL+ L + R +K ++A F A A ++ +F + + A V PP Sbjct: 7 PRVVPIDGQIDLVELAQGILR-QKWLIASFFLLATALAVVYAFYSRPIYEARASVLPPSL 65 Query: 76 -PVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEA 134 + L + + L V + + +++FI+ + + + + + L + Sbjct: 66 NEISGFNLGRKESDLGVFSV------KDIYDVFIRNLMAEETRQNFFKEK--YLPTLGDK 117 Query: 135 KIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDY 194 + LD ++KA D + + + +S A S+ A ++ YI+ Sbjct: 118 GAESLDALYNKFNDELQIKASVDGSGR----------YLISAVAHESDTAAYLVDSYIEM 167 Query: 195 ISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKK 254 ++ + E L+N++ L +K+ ++++ R K + + I RL +L IA A I+ Sbjct: 168 VAGISKNEMLKNIKRDLHVKSVNLEQQINIMRAMAKTRREDTILRLREALKIAEALKIEN 227 Query: 255 PVYSNGQAVKDDPDFSIS-----LGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLT 309 P GQ + I GA + ++ +A G LR Q T Sbjct: 228 PPSFEGQTERQLSSIMIGELMYMRGAKALRAEISSLEARESDDSFIGGLRALQERYALYT 287 Query: 310 KAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASR 366 K ++ + ++ K P K II++L A+ G + C LLR R Sbjct: 288 KLSPDESQVSVYRKDGVVETSDKPIKPKKLIIIVLGAVFGIFLGCLVGLLRIVQFRR 344 >UniRef50_C7M6P7 Lipopolysaccharide biosynthesis protein n=2 Tax=Capnocytophaga RepID=C7M6P7_CAPOD Length = 355 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 31/49 (63%) Query: 25 NEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTP 73 +EIDLL LI+ LWRAKK++ F G+L++ +++T+ ++ P Sbjct: 13 DEIDLLQLINKLWRAKKSITVFTLIFMVIGILVALFSAKEYTATTIMVP 61 >UniRef50_Q1N5G1 Lipopolysaccharide biosynthesis n=1 Tax=Bermanella marisrubri RepID=Q1N5G1_9GAMM Length = 388 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 94/383 (24%), Positives = 157/383 (40%), Gaps = 62/383 (16%) Query: 22 PSN-NEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQ 80 P+N +EIDL +L + K V+A + L + + + V+ PP V Sbjct: 14 PNNSDEIDLFDLWDDVVENKVWVLAGLLGCIILAALYLLRATEIFETQVVIKPPSDVHVL 73 Query: 81 EL---EKSFTKLRVLDLDIKIDRTEAFNLF----IKKFQSVSLLEEY----LRSSPYVMD 129 EL + S TKL + I E F L ++ Q L +EY + V++ Sbjct: 74 ELNPPQLSATKLSSKGEAV-IYEDEIFGLTAEQAYQEAQKAVLSKEYRKAFFKDHIPVIE 132 Query: 130 QLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLS 189 + D+L +++ NA K ++ + LSF P S+E+ +L+ Sbjct: 133 EFGTVYSDKLLMNQNFANFDRLFSFSVSNAKKDTEQFT-----KLSFEFPDSQESAELLN 187 Query: 190 GYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQR----LNYSLD 245 ++ Y LV K LE ++ L K Q E L K K + R LN + Sbjct: 188 AFVVY--ALVKK--LEEIKTTLSGKVQAEILNLQYQVDKLKEEYKGERNRTLLLLNEAKH 243 Query: 246 IANAAGIKKPVYSNGQAVKDDPDFSI--------SLGA----DGIERKLEI--EKAVTDV 291 IA GI KP + Q + ++P + +GA D + + L E + V Sbjct: 244 IAEKVGINKPAFDKNQVLTEEPPLYMYGSKALNAEIGAIKNRDSMAKDLSFGEEYFIEGV 303 Query: 292 AELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQL------SPSLPVKKDGPGKAIIVILS 345 ++L Y ++QL K +V+++ K L P+ P+K P K +I+ L+ Sbjct: 304 SQL-------LYRIDQLKKL---EVDYSKVKLALIDEEAIPPTSPIK---PKKLLILALA 350 Query: 346 ALIGGMVACGGVLLRYAMASRKQ 368 + G GG++L MA+ K+ Sbjct: 351 GVAG---LFGGIMLALIMAAFKR 370 >UniRef50_D0YWK9 O-antigen chain length determinant protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YWK9_LISDA Length = 352 Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust. Identities = 85/366 (23%), Positives = 152/366 (41%), Gaps = 65/366 (17%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE 83 +N+++LLN+ VLW K ++ L++S Q W S+A +T P+ + Sbjct: 11 DNQLNLLNIFRVLWTRKLIIIISTIIGIVLALIVSIYSAQWWESSAEITKPQYSDYAVFI 70 Query: 84 KSFTKLRV-------LDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKI 136 S +L L I I++ +N FI L S +D L+++ I Sbjct: 71 SSADQLTTGSNPSESLKSIINIEKN--YNSFI----------NILTSKTNKIDFLQQSNI 118 Query: 137 DELDLHRAIVALS-EKMKAVDDNASK---KKDEPSLY-TSWTLSFTAPTSEEAQTVLSGY 191 + R V +K KA+D A K KK+ L +S+ + A T +++ +L+ Y Sbjct: 119 IKSYFIRDGVKTDIQKDKALDLWAEKIIVKKESLILNKSSYIVIAQANTLDDSFKLLNNY 178 Query: 192 IDYISTLVVKESLENVRNKLEIKTQFEKEKLAQ-DRIKTKNQLDANI-----------QR 239 I + +NK E + + + K QLD NI Q+ Sbjct: 179 IKF------------TKNKYNSDVLLSLETFKRIELLNLKKQLDYNISYTLDIKKLKEQK 226 Query: 240 LNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELR 299 +L+IA +GI+ P+ + F+I+LGA + + + ++ D+A N ++ Sbjct: 227 AQLALNIAEESGIESPL---NNYFEKGSSFNIALGAKALRAEKNVISSLKDLAIFNDKIT 283 Query: 300 NRQYLVEQLTKAHVNDV------NFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVA 353 L QL ++N+V N F Y + K P K +++ +L + A Sbjct: 284 ---LLSSQLN--YLNNVKLSNLENNAFFSYIQTEHKNPNKIAPSKKTFILVFSL---LFA 335 Query: 354 CGGVLL 359 C G+++ Sbjct: 336 CIGIVI 341 >UniRef50_Q31F07 Lipopolysaccharide biosynthesis protein Wzz n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31F07_THICR Length = 364 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 83/376 (22%), Positives = 156/376 (41%), Gaps = 35/376 (9%) Query: 7 KQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWT 66 KQ HF + + ++EIDL L + L + K TV G + +F + + Sbjct: 3 KQSVRPHFEE---KASMDDEIDLFELWNGLVQEKLTVFLSFLMIIGLGTIYAFSVTPVYK 59 Query: 67 SAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPY 126 S A + PP+ + Q++ + L + D + FN + + S + L + + Sbjct: 60 SDAYLLPPKASEIQDINRLNATLGIGD---AYSVNDVFNTYTENLLSRARLLTFFKQHNL 116 Query: 127 VMD-----QLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTS 181 + + KE ++ E + + + E+ K+ + TL A Sbjct: 117 IAFYEPDFKNKEKEVREKEFNDSFSTFVEEFGITHPKDGAKR----VMVEMTLPVDA--- 169 Query: 182 EEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKL-----AQDRIKTKNQLDAN 236 ++ + L+ YI I E+ + + + + QF ++L A K++ D Sbjct: 170 DQVKEFLTQYIQKIRI----ETRKQITTDIFTRKQFLMQQLINQINAVKETAQKHRED-K 224 Query: 237 IQRLNYSLDIANAAGIKKPVYS----NGQAVKDDPDFSISLGADGIERKLEI-EKAVTDV 291 I RL+ S+ +A IK+P+ + N Q V++ LG +E + ++ +K TD Sbjct: 225 IARLDESIKVARQLKIKEPLSAGPAMNIQGVQNQGLPLYYLGYQVLEAEKDVLKKRKTDD 284 Query: 292 AELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGM 351 A G+LR + L +N F P + +K P KA+I+ +S ++G M Sbjct: 285 A-FTGKLRELEERYNLLDSVEINGDLFKVVNVDQPPEIG-EKVKPKKALILAVSGVLGLM 342 Query: 352 VACGGVLLRYAMASRK 367 + L+R A+ +RK Sbjct: 343 LGIFIALIRRAIKNRK 358 >UniRef50_A3JJA1 Lipopolysaccharide biosynthesis n=1 Tax=Marinobacter sp. ELB17 RepID=A3JJA1_9ALTE Length = 378 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 72/379 (18%), Positives = 157/379 (41%), Gaps = 46/379 (12%) Query: 22 PSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQE 81 P ++EIDL + +W + V+ +V + ++ + P+ + + ++ + + Sbjct: 7 PYDDEIDLFEIFETVWDGRWRVIGIVILAVLISIAVNVLKPELYNGSTALSKAPSSSFIK 66 Query: 82 LEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDL 141 L+ I F++F+ +F + + L S Y+ +L+ +I++ + Sbjct: 67 YSSVNETLQQSGFSYAISSQSVFDMFVTEFADYDEVVKILEKSDYIKQRLQAIEIEDRND 126 Query: 142 HRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVK 201 +A + ++ +N + W+L + S E++ + + I+ + V + Sbjct: 127 FLVYMAKNFEILPPSENGNH----------WSLDYEWRDSNESKKIFTQSIEDVLANVRQ 176 Query: 202 ESLENV---RNKLEIKTQFEKEKLAQDRIKTKNQLDANIQR----LNYSLDIANAAGIKK 254 L ++ + I+ + +K++L D + ++ ++ ++ + LN IA G++K Sbjct: 177 TILSDIDELARTVSIRNKNKKQRLNADLVALEDAINLDLAKRLLYLNEQTAIAKELGVEK 236 Query: 255 -PVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAEL----NGELR---NRQYLV- 305 + NG + S+S+ + I L KA+ +L + E R N Y+ Sbjct: 237 NSLNGNGLFQSQNTGVSLSVTSSDIPFYLRGFKAIDKEIDLLFSRSKEDRLAINNTYVSI 296 Query: 306 -EQLTKAHVNDVNF----------------TPFKYQLSPSLPVKKDGPGKAIIVILSALI 348 QL+ H NDV+ + Y LS + + P + IL+A++ Sbjct: 297 KTQLSSIH-NDVSMQQIMSAKGSVADDDVTSWLAYDLSLATTSSQSKP--VLYAILAAML 353 Query: 349 GGMVACGGVLLRYAMASRK 367 G MV VL+ A+ RK Sbjct: 354 GLMVGVFNVLVSSAVRKRK 372 >UniRef50_C4FKG4 Lipopolysaccharide biosynthesis protein (Fragment) n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FKG4_9AQUI Length = 176 Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 25 NEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTP 73 +EIDL L ++W + + +VF +ISFILP+ +TS +V+ P Sbjct: 16 DEIDLFELFHIIWNNRFFIAKIVFGITILTAIISFILPKTYTSESVIVP 64 >UniRef50_Q5R093 Chain length determinant protein n=1 Tax=Idiomarina loihiensis RepID=Q5R093_IDILO Length = 336 Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 9 GSDAHFPDYPLAS-PSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTS 67 G + P+Y P ++EIDL L ++W K ++A+ F FA ++ S LP + + Sbjct: 18 GPGQYPPNYYNGPYPQDDEIDLRELFGIIWDGKWIIIAITFVFAVGSVIYSLSLPNIYKA 77 Query: 68 AAVVTPPE 75 A + P E Sbjct: 78 EATLAPTE 85 >UniRef50_A4Y8H9 Lipopolysaccharide biosynthesis n=30 Tax=Gammaproteobacteria RepID=A4Y8H9_SHEPC Length = 329 Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust. Identities = 90/380 (23%), Positives = 150/380 (39%), Gaps = 89/380 (23%) Query: 10 SDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAA 69 SDA FP ++EIDL L SV+W+ K ++A+ FA ++ + P + S A Sbjct: 14 SDARFPQV-----QDDEIDLRELFSVIWQGKWLIIAITAIFAVGAVIFAIKQPNIYKSEA 68 Query: 70 VVTPPEPVQWQELEK------SFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRS 123 ++ P Q L L ++L K + T+ L I+ +S E+++ Sbjct: 69 LLAPVSEEQGGGLSALASQFGGLASLAGVNLGGK-NGTDKTQLAIEVLKSRQFTSEFIQK 127 Query: 124 SPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLY----TSWTLSFTAP 179 + D + K D D + I A P+LY +W AP Sbjct: 128 HNILADLMAAEKWDA-DADKIIYA------------------PALYNEQTNTWVREVKAP 168 Query: 180 TSEE--AQTVLSGYIDYISTLVVKES---LENVRNKLEIKTQFEKEKLAQD---RIKTKN 231 E Q + IS VKE+ +V + I Q L QD +K ++ Sbjct: 169 IKPEPSMQEAYKVFNKIISVNSVKETGMVTLSVEHLSPIVAQQWVTWLIQDINKVMKDRD 228 Query: 232 QLDAN--IQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVT 289 +AN + LN + + N A I+ +Y KL E+A T Sbjct: 229 VAEANRSSEFLNKQIALTNVADIRTILY-----------------------KLVEEQAKT 265 Query: 290 DVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIG 349 + E+R+ +Y+ + + A L+P +K P +A+I +L ++G Sbjct: 266 I---MFAEVRD-EYVFKTIDPA-------------LAPE---EKAKPKRALICVLGTILG 305 Query: 350 GMVACGGVLLRYAMASRKQD 369 GM+ VL+R+ M ++QD Sbjct: 306 GMLGVMLVLVRHFM-RKEQD 324 >UniRef50_Q1ID96 O-antigen chain length regulator protein (Wzz) n=1 Tax=Pseudomonas entomophila L48 RepID=Q1ID96_PSEE4 Length = 346 Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust. Identities = 49/256 (19%), Positives = 105/256 (41%), Gaps = 14/256 (5%) Query: 25 NEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEK 84 EID + L+ VL++ V+ V GL+ F +P ++ + PP +L Sbjct: 12 GEIDFIELLVVLFKEWLLVVKVASLVFALGLVYVFYVPSRYEAKLFTIPPTQNDIAQLNY 71 Query: 85 SFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRA 144 L L I + ++ +++ S S+ E+ + K+ DL+R Sbjct: 72 GRGGSAELPL---ISVGDVYSSYVRNLNSESMRMEFFNDVYFPSLAEKQKTSLRSDLYRQ 128 Query: 145 IVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESL 204 A ++ D + + + ++ ++ + EEA + Y +E L Sbjct: 129 FFAALSILQGGKDQSDR----------YLITASSSSPEEAAKWVKQYTQMAGDRAKREVL 178 Query: 205 ENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAG-IKKPVYSNGQAV 263 +N+ + +K ++++ +++ + + D I RL +L IA + G +K P+ S Sbjct: 179 KNIYSDALVKADNLEKQIRREQESARRERDDRIARLTEALVIARSVGLVKPPIISAELTA 238 Query: 264 KDDPDFSISLGADGIE 279 + + + G+D +E Sbjct: 239 QMNGSLTYMRGSDALE 254 >UniRef50_B0VFR9 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFR9_9BACT Length = 395 Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust. Identities = 84/388 (21%), Positives = 161/388 (41%), Gaps = 81/388 (20%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTP-PEPVQWQE 81 + NE+ LL++I V+ + K V+++ A ++ S ++PQ W S A + P E Sbjct: 2 NKNELGLLDIILVIAKRKTLVISICLLVAIGAIIYSLVVPQYWESKATLMPIAESGSLGS 61 Query: 82 LEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSS---PYVMDQLKEAKIDE 138 L F L L ++ D+ + FI QS EE +R PY KI+E Sbjct: 62 LGGGFMDLLGSGL-LQTDKYDMAVDFIYIMQSRKFQEEVIRKFNLIPYY-------KINE 113 Query: 139 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYT-----SWTLSFTAPT--SEEAQTVLSGY 191 D +A+ + A KK E ++ ++ ++ A T E ++ ++ + Sbjct: 114 PDTLKAM-----------ELAVKKLSESTMQIFYDQKTYLVNIIAETKNKELSRQIVQYH 162 Query: 192 IDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANI---QRLNYSLDIAN 248 +D ++ ++ + R K E EK ++ L I Q+ N S+DI Sbjct: 163 LDSLNKYILHSKMSKGRQKREF-----LEKQVDSHLQAVYSLSEQIRDFQKKNRSIDITQ 217 Query: 249 AAGIKKPVYSN--GQAVKDDPDFSISL------------------------------GAD 276 + +YS+ + ++ + + S++L G+D Sbjct: 218 QTEAQLELYSDIVAEYMQTEIEHSLALSQYSADSPVVINLAEKLQLLKKKIKSLEKSGSD 277 Query: 277 GI-ERKLEIEKAVTDVA------ELNGELRNR--QYLVEQLTKAHVNDVNFTP-FKYQLS 326 + E ++I+K + D+A LN E+ + +YL Q A + +V P F+ + Sbjct: 278 LVPEYIVQIDK-IPDLAMQYAQMMLNLEIEKKIIEYLYPQFELAKLEEVKDLPTFEVYDA 336 Query: 327 PSLPVKKDGPGKAIIVILSALIGGMVAC 354 P L + P +A+ V++S + +++C Sbjct: 337 PQLAGIRSKPKRALTVVISTVAAFILSC 364 >UniRef50_B3RTL5 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RTL5_TRIAD Length = 7710 Score = 42.0 bits (97), Expect = 0.035, Method: Composition-based stats. Identities = 59/262 (22%), Positives = 111/262 (42%), Gaps = 41/262 (15%) Query: 78 QWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKK---------FQSVSLLEEYLRSSPYVM 128 + + LEK F R +D +A + +KK + S LE+ L +S Sbjct: 6886 EMKALEKQFEAERKKSVD------DALTVLLKKQAAEREAMLAKHQSELED-LENSDLAP 6938 Query: 129 DQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVL 188 D+L++ K + L+ + + LS+ + +D +K+ E S T + F + + Sbjct: 6939 DELEQQKSNLLNKQQ--LELSKLEQKHEDQ--RKRLERSTLTDLEVKFANEKLKLKEQQY 6994 Query: 189 SGYIDYISTL--------------VVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLD 234 Y D +S L V + L+N+R KLE++ Q ++EKL Q+R + Q + Sbjct: 6995 KEYADALSQLTPEQDAAVKVEKAKVAAQDLDNLRKKLEVQRQEQEEKLKQERNAFETQAE 7054 Query: 235 ANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAEL 294 ++ + D ++K + Q +K D + + IE K E K + + Sbjct: 7055 DDLAKAIKDFD----KQLEKEMDLQKQKLKQDIEELDARKTKAIEEKKEQAKQELEAKQK 7110 Query: 295 NGELRNRQYLVEQLTKAHVNDV 316 +G + +++LT H D+ Sbjct: 7111 SGSSKEE---LQRLTDQHEKDL 7129 >UniRef50_Q1QWX5 Lipopolysaccharide biosynthesis n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QWX5_CHRSD Length = 365 Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust. Identities = 82/388 (21%), Positives = 150/388 (38%), Gaps = 78/388 (20%) Query: 20 ASPSNNEIDLLNLISVL-----WRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPP 74 A ++EIDL L++ L W V VV A AG ++ PQ TS TP Sbjct: 6 ARHDDDEIDLSQLLNHLIDGWYW----IVGCVVAALVLAGAYLAMTTPQYETSFRA-TPA 60 Query: 75 EPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEA 134 +F + +L + +A+ + S +EY+RS + A Sbjct: 61 A-------SSNFAGMNLLS-GFSVSPQDAYTTLGNRLSSFQNFQEYVRSHREAFVIPEGA 112 Query: 135 KIDELDLHRA-IVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYID 193 + L +R I L+ ++ + +L++ P E +L+GY++ Sbjct: 113 SLGSLFTNRLDITGLTSEVNGASE--------------LSLTYRYPEGESGHRILNGYVN 158 Query: 194 YISTLVVKESLEN---VRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAA 250 + V E L+N N+ +I + ++ +D++ + + + L+ ++ A A Sbjct: 159 ATAEQVWSE-LKNRFARANQAKIAALNTRLQVGEDKLLAER--EHRLFALDNAISTARAL 215 Query: 251 GIKKPVYSN--GQAVKDDPDFSISLGADG----------IERKLEIEKAVTDVAELNGEL 298 GI+ P GQ + SL DG +E + E K NG L Sbjct: 216 GIEAPTTPQEFGQLNPNKEVIYTSLSGDGLPLYFMGYKTLEAERETLKGKLHDGLSNGTL 275 Query: 299 RNRQYLVEQLTKAH-----VNDVNFTPFKYQLSPS----------------LPVKKDGPG 337 RN + E+L + H + + +F P + +S PVK P Sbjct: 276 RN---IREELEQRHQIADMLKNDSFYPLEEGVSEHPDERVVSVIERAYPQDAPVK---PR 329 Query: 338 KAIIVILSALIGGMVACGGVLLRYAMAS 365 A+++ L+ ++GGM+ V ++ + + Sbjct: 330 SALVLALAVILGGMLGVFLVFMKAGLGA 357 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P26266 Ferric enterobactin transport protein fepE n=158... 432 e-119 UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 T... 352 2e-95 UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yers... 349 9e-95 UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10... 342 1e-92 UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enter... 332 1e-89 UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersini... 315 2e-84 UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=En... 309 2e-82 UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 T... 302 1e-80 UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Provide... 296 8e-79 UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Pr... 290 8e-77 UniRef50_UPI000197BC0B ferric enterobactin transport protein Fep... 281 3e-74 UniRef50_A5KZS4 Regulator of length of O-antigen component of li... 264 4e-69 UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannhei... 258 2e-67 UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae Re... 258 2e-67 UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photoba... 257 4e-67 UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0... 257 5e-67 UniRef50_C9P0E2 Regulator of length of O-antigen component of li... 253 7e-66 UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio ... 253 8e-66 UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aerom... 252 2e-65 UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C... 250 9e-65 UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=... 245 2e-63 UniRef50_Q3YTC2 O antigen chain length determinant protein n=5 T... 240 5e-62 UniRef50_A1JMR4 O-antigen chain length determinant n=5 Tax=Yersi... 238 2e-61 UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=1... 237 4e-61 UniRef50_A7JUL8 O-antigen chain length determining protein n=2 T... 236 8e-61 UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycete... 227 5e-58 UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropn... 222 2e-56 UniRef50_Q8KN75 Wzz n=1 Tax=Pseudomonas aeruginosa RepID=Q8KN75_... 216 1e-54 UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=... 213 6e-54 UniRef50_Q1Z8B9 Ferric enterobactin transport protein n=1 Tax=Ph... 213 9e-54 UniRef50_P35272 Chain length determinant protein n=110 Tax=Enter... 206 1e-51 UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 T... 205 3e-51 UniRef50_Q2BJF5 O-antigen chain length regulator n=1 Tax=Neptuni... 203 9e-51 UniRef50_A1SRR6 Chain length determinant protein-like protein n=... 201 3e-50 UniRef50_Q04866 Chain length determinant protein n=30 Tax=Salmon... 198 3e-49 UniRef50_C4K3Z7 Regulator of length of O-antigen component of li... 186 1e-45 UniRef50_Q02PW5 O-antigen chain length regulator n=19 Tax=Pseudo... 184 3e-45 UniRef50_P44063 Uncharacterized protein HI0866 n=7 Tax=Haemophil... 143 8e-33 UniRef50_A4C8G6 OtnB protein n=1 Tax=Pseudoalteromonas tunicata ... 139 1e-31 UniRef50_C7M6P7 Lipopolysaccharide biosynthesis protein n=2 Tax=... 89 3e-16 UniRef50_C3K6I8 Conserved hypothetical chain length determinant ... 73 3e-11 Sequences not found previously or not previously below threshold: UniRef50_Q31F07 Lipopolysaccharide biosynthesis protein Wzz n=1 ... 156 1e-36 UniRef50_Q8KNB4 Wzz n=2 Tax=Pseudomonas aeruginosa RepID=Q8KNB4_... 140 7e-32 UniRef50_Q1ID96 O-antigen chain length regulator protein (Wzz) n... 138 3e-31 UniRef50_D0YWK9 O-antigen chain length determinant protein n=1 T... 134 4e-30 UniRef50_Q1N5G1 Lipopolysaccharide biosynthesis n=1 Tax=Bermanel... 129 2e-28 UniRef50_C3KAZ7 Putative chain length determinant protein n=1 Ta... 128 3e-28 UniRef50_A4Y8H9 Lipopolysaccharide biosynthesis n=30 Tax=Gammapr... 119 2e-25 UniRef50_Q1QWX5 Lipopolysaccharide biosynthesis n=1 Tax=Chromoha... 114 7e-24 UniRef50_Q5R093 Chain length determinant protein n=1 Tax=Idiomar... 112 3e-23 UniRef50_B0KTY6 Lipopolysaccharide biosynthesis protein n=1 Tax=... 109 1e-22 UniRef50_C9P0B3 Lipopolysaccharide biosynthesis n=1 Tax=Vibrio c... 105 3e-21 UniRef50_UPI000197C816 regulator of length of O-antigen componen... 104 4e-21 UniRef50_A3JJA1 Lipopolysaccharide biosynthesis n=1 Tax=Marinoba... 102 2e-20 UniRef50_C7RAP5 Lipopolysaccharide biosynthesis protein n=1 Tax=... 101 6e-20 UniRef50_C6MYW2 Putative Wzz n=1 Tax=Legionella drancourtii LLAP... 101 6e-20 UniRef50_D0Z7Z5 Chain length determinant protein n=1 Tax=Edwards... 99 3e-19 UniRef50_A5UI14 Putative uncharacterized protein n=2 Tax=Haemoph... 97 9e-19 UniRef50_UPI0001C34705 lipopolysaccharide biosynthesis protein n... 96 3e-18 UniRef50_Q1YPV1 OtnB protein n=1 Tax=gamma proteobacterium HTCC2... 95 5e-18 UniRef50_A4BIX4 Putative uncharacterized protein n=1 Tax=Reineke... 94 1e-17 UniRef50_B8KUX8 Chain length determinant protein n=1 Tax=gamma p... 86 1e-15 UniRef50_A3N2K1 Putative uncharacterized protein n=3 Tax=Actinob... 83 1e-14 UniRef50_D0WWA9 Putative uncharacterized protein n=3 Tax=Vibrio ... 83 2e-14 UniRef50_A7I0H6 Chain length determinant protein n=1 Tax=Campylo... 81 5e-14 UniRef50_A6ASH0 OtnB protein n=10 Tax=Vibrio RepID=A6ASH0_VIBHA 80 1e-13 UniRef50_A6F1J1 Chain length determinant protein n=1 Tax=Marinob... 78 6e-13 UniRef50_Q6AS84 Putative uncharacterized protein n=1 Tax=Desulfo... 77 9e-13 UniRef50_B0VFR9 Putative uncharacterized protein n=1 Tax=Candida... 76 3e-12 UniRef50_Q2LWK4 Hypothetical membrane protein n=1 Tax=Syntrophus... 74 7e-12 UniRef50_C5R191 Putative uncharacterized protein (Fragment) n=2 ... 74 8e-12 UniRef50_C1TR41 Uncharacterized protein involved in exopolysacch... 73 1e-11 UniRef50_Q6AS85 Putative uncharacterized protein n=1 Tax=Desulfo... 73 2e-11 UniRef50_Q21IT7 Lipopolysaccharide biosynthesis n=1 Tax=Saccharo... 73 3e-11 UniRef50_A6VA35 Chain length determinant protein n=7 Tax=Pseudom... 71 5e-11 UniRef50_A0B7Q9 Lipopolysaccharide biosynthesis n=1 Tax=Methanos... 71 7e-11 UniRef50_O66795 Putative uncharacterized protein n=1 Tax=Aquifex... 70 1e-10 UniRef50_A4BYL5 Putative uncharacterized protein n=1 Tax=Polarib... 70 1e-10 UniRef50_C1DT90 Ferric enterobactin transport protein n=1 Tax=Su... 70 1e-10 UniRef50_C4KCI7 Lipopolysaccharide biosynthesis protein n=1 Tax=... 69 2e-10 UniRef50_C2M1S4 Putative uncharacterized protein n=1 Tax=Capnocy... 69 2e-10 UniRef50_B3E8V9 Lipopolysaccharide biosynthesis protein n=4 Tax=... 69 2e-10 UniRef50_A4EGG2 Succinoglycan biosynthesis transport protein exo... 68 5e-10 UniRef50_A7AKH2 Putative uncharacterized protein n=2 Tax=Parabac... 68 5e-10 UniRef50_Q2SJH6 Uncharacterized protein involved in exopolysacch... 68 6e-10 UniRef50_Q9CNG7 Putative uncharacterized protein n=1 Tax=Pasteur... 67 1e-09 UniRef50_A8FXK9 Chain length determinant family protein n=1 Tax=... 67 1e-09 UniRef50_C5V7I4 Lipopolysaccharide biosynthesis protein n=1 Tax=... 66 2e-09 UniRef50_A4SDR7 Lipopolysaccharide biosynthesis protein n=2 Tax=... 66 2e-09 UniRef50_C8PNG3 Chain length determinant protein n=1 Tax=Trepone... 66 2e-09 UniRef50_C9PPK9 Lipopolysaccharide biosynthesis protein WzzE n=1... 66 3e-09 UniRef50_Q65U41 Putative uncharacterized protein n=1 Tax=Mannhei... 65 4e-09 UniRef50_Q5P6W3 Putative uncharacterized protein n=1 Tax=Aromato... 65 5e-09 UniRef50_C1F864 Chain length determinant protein domain protein ... 64 6e-09 UniRef50_B7AIQ3 Putative uncharacterized protein n=2 Tax=Bactero... 64 9e-09 UniRef50_B8E0I3 Lipopolysaccharide biosynthesis protein n=1 Tax=... 64 1e-08 UniRef50_C1XU43 Chain length determinant protein n=1 Tax=Meiothe... 63 1e-08 UniRef50_B5YEW0 Lipopolysaccharide biosynthesis n=1 Tax=Dictyogl... 63 2e-08 UniRef50_C5S436 Putative uncharacterized protein n=2 Tax=Actinob... 63 2e-08 UniRef50_B6BQX7 Chain length determinant protein n=1 Tax=Candida... 61 6e-08 UniRef50_C5BSK8 Chain length determinant protein n=1 Tax=Teredin... 61 7e-08 UniRef50_C9PY96 Chain length determinant protein n=1 Tax=Prevote... 61 1e-07 UniRef50_D1B3W3 Lipopolysaccharide biosynthesis protein n=1 Tax=... 60 1e-07 UniRef50_C4FKG4 Lipopolysaccharide biosynthesis protein (Fragmen... 60 1e-07 UniRef50_Q2CAF1 Putative uncharacterized protein n=2 Tax=Rhodoba... 60 1e-07 UniRef50_Q1ITA8 Lipopolysaccharide biosynthesis n=1 Tax=Candidat... 60 1e-07 UniRef50_B5JNI6 Chain length determinant protein n=1 Tax=Verruco... 59 2e-07 UniRef50_Q1YH82 Possible exopolysaccharide biosynthesis/transpor... 59 2e-07 UniRef50_C7LVW8 Capsular exopolysaccharide family n=1 Tax=Desulf... 59 3e-07 UniRef50_D2QRK9 Lipopolysaccharide biosynthesis protein n=1 Tax=... 58 5e-07 UniRef50_D0MG08 Lipopolysaccharide biosynthesis protein n=1 Tax=... 58 6e-07 UniRef50_C5S677 Putative uncharacterized protein n=1 Tax=Allochr... 58 6e-07 UniRef50_B6B6U1 Succinoglycan biosynthesis transport protein Exo... 58 6e-07 UniRef50_A4EII1 Protein-tyrosine kinase n=1 Tax=Roseobacter sp. ... 58 7e-07 UniRef50_A7JRK0 Lipopolysaccharide chain length determinant prot... 57 7e-07 UniRef50_A6TJR1 Lipopolysaccharide biosynthesis protein n=1 Tax=... 57 7e-07 UniRef50_B2PVB4 Putative uncharacterized protein n=3 Tax=Provide... 57 9e-07 UniRef50_A3WQF3 Putative tyrosine-protein kinase Wzc (Fragment) ... 57 1e-06 UniRef50_B3C5C8 Putative uncharacterized protein n=1 Tax=Bactero... 57 1e-06 UniRef50_Q7UF18 Similar to type 8 capsule gene Cap8B n=1 Tax=Rho... 56 2e-06 UniRef50_Q39VZ4 Lipopolysaccharide biosynthesis n=5 Tax=Geobacte... 56 2e-06 UniRef50_C9LJ77 Chain length determinant protein n=1 Tax=Prevote... 56 2e-06 UniRef50_A4C494 Exopolysaccharide biosynthesis protein, putative... 56 2e-06 UniRef50_B9ZNL2 Lipopolysaccharide biosynthesis protein n=1 Tax=... 56 3e-06 UniRef50_A6BAV1 OtnB protein (Fragment) n=1 Tax=Vibrio parahaemo... 56 3e-06 UniRef50_C4KCH6 Lipopolysaccharide biosynthesis protein n=1 Tax=... 56 3e-06 UniRef50_Q74C20 Capsule polysaccharide export protein, putative ... 55 4e-06 UniRef50_C6JIE9 Predicted protein n=2 Tax=Fusobacterium RepID=C6... 55 4e-06 UniRef50_Q161P5 Chain length determinant domain protein n=2 Tax=... 55 4e-06 UniRef50_Q2T3S0 Chain length determinant protein domain protein ... 55 5e-06 UniRef50_B2TEB6 Exopolysaccharide transport protein family n=5 T... 55 5e-06 UniRef50_Q2S4Z4 Chain length determinant protein n=1 Tax=Salinib... 54 7e-06 UniRef50_C8X034 Lipopolysaccharide biosynthesis protein n=1 Tax=... 54 8e-06 UniRef50_B6C223 Chain length determinant protein n=1 Tax=Nitroso... 54 8e-06 UniRef50_Q39TL3 Lipopolysaccharide biosynthesis n=1 Tax=Geobacte... 54 8e-06 UniRef50_B0K509 Lipopolysaccharide biosynthesis protein n=14 Tax... 54 9e-06 UniRef50_B8CL31 Chain length regulator (Capsular polysaccharide ... 54 1e-05 UniRef50_C6NU30 Lipopolysaccharide biosynthesis n=1 Tax=Acidithi... 54 1e-05 UniRef50_P58764 Tyrosine-protein kinase etk n=184 Tax=Enterobact... 53 1e-05 UniRef50_A3V8G8 Protein-tyrosine kinase n=1 Tax=Loktanella vestf... 53 1e-05 UniRef50_Q0AW94 Capsular polysaccharide biosynthesis protein-lik... 53 1e-05 UniRef50_A3VRW3 Polysaccharide chain length determinant protein ... 53 2e-05 UniRef50_D1PA57 Chain length determinant protein n=1 Tax=Prevote... 52 2e-05 UniRef50_Q7NZZ7 Putative uncharacterized protein n=1 Tax=Chromob... 52 3e-05 UniRef50_B8F354 Tyrosine kinase, chain length regulator in capsu... 52 3e-05 UniRef50_D0MHQ9 Capsular exopolysaccharide family n=1 Tax=Rhodot... 52 3e-05 UniRef50_A0NNU3 Putative MPA1 family protein n=1 Tax=Labrenzia a... 52 3e-05 UniRef50_Q0FE97 OtnB protein n=1 Tax=Rhodobacterales bacterium H... 51 6e-05 UniRef50_A4VKD6 Tyrosine-protein kinase n=9 Tax=cellular organis... 51 7e-05 UniRef50_Q489D4 Tyrosine-protein kinase n=7 Tax=Gammaproteobacte... 51 7e-05 UniRef50_B8GTU6 Putative uncharacterized protein n=1 Tax=Thioalk... 51 8e-05 UniRef50_C9RR06 Lipopolysaccharide biosynthesis protein n=1 Tax=... 51 9e-05 UniRef50_A1WX76 Lipopolysaccharide biosynthesis n=3 Tax=Ectothio... 51 1e-04 UniRef50_A3SUA0 Putative uncharacterized protein n=3 Tax=Rhodoba... 51 1e-04 UniRef50_B2IJA7 Capsular exopolysaccharide family n=1 Tax=Beijer... 51 1e-04 UniRef50_Q5LEP2 Conserved hypothetical membrane protein n=13 Tax... 50 1e-04 UniRef50_B3ELK8 Lipopolysaccharide biosynthesis protein n=1 Tax=... 50 1e-04 UniRef50_C7H2L1 Putative uncharacterized protein n=1 Tax=Faecali... 50 1e-04 UniRef50_Q84GX2 Orf41 n=3 Tax=Photorhabdus RepID=Q84GX2_PHOLU 50 2e-04 UniRef50_Q13NU9 Exopolysaccharide transport protein n=1 Tax=Burk... 50 2e-04 UniRef50_Q65SG7 GumC protein n=2 Tax=Pasteurellaceae RepID=Q65SG... 49 2e-04 UniRef50_Q21Z35 Lipopolysaccharide biosynthesis n=1 Tax=Rhodofer... 49 2e-04 UniRef50_A3V6B4 Putative uncharacterized protein n=1 Tax=Loktane... 49 2e-04 UniRef50_A4AB87 Chain length determinant protein n=2 Tax=unclass... 49 2e-04 UniRef50_B5S582 Putative tyrosine-protein kinase epsb , polysacc... 49 3e-04 UniRef50_Q72WQ0 Chain length determinant family protein n=4 Tax=... 49 3e-04 UniRef50_Q7U940 Putative uncharacterized protein n=1 Tax=Synecho... 49 3e-04 UniRef50_A3K8W6 Chain length determinant protein, putative n=3 T... 49 3e-04 UniRef50_C1F294 Chain length determinant family protein n=1 Tax=... 49 3e-04 UniRef50_B9JK00 Capsule polysaccharide export transport system p... 49 3e-04 UniRef50_B5CXQ8 Putative uncharacterized protein n=1 Tax=Bactero... 49 4e-04 UniRef50_Q2C5X1 Chain length regulator (Capsular polysaccharide ... 49 4e-04 UniRef50_B8D183 Lipopolysaccharide biosynthesis protein n=1 Tax=... 48 4e-04 UniRef50_B1KCB3 Exopolysaccharide transport protein family n=2 T... 48 5e-04 UniRef50_D2PZ20 Lipopolysaccharide biosynthesis protein n=1 Tax=... 48 5e-04 UniRef50_C3KRX1 CPSC/CAPB subfamily ATPase n=5 Tax=Rhizobiales R... 48 5e-04 UniRef50_D1BLU6 Lipopolysaccharide biosynthesis protein n=3 Tax=... 48 5e-04 UniRef50_C9MSS5 Chain length determinant protein n=2 Tax=Prevote... 48 5e-04 UniRef50_C6BLZ1 Putative uncharacterized protein n=2 Tax=Ralston... 47 7e-04 UniRef50_Q3IV72 Predicted acetyltransferase n=4 Tax=Rhodobacter ... 47 7e-04 UniRef50_C5BJM9 Putative OtnB protein n=1 Tax=Teredinibacter tur... 47 8e-04 UniRef50_B7RJK1 Protein-tyrosine kinase, putative n=3 Tax=Rhodob... 47 8e-04 UniRef50_Q0AAI3 Putative uncharacterized protein n=1 Tax=Alkalil... 47 0.001 UniRef50_C0VIY7 Protein tyrosine kinase n=4 Tax=Acinetobacter Re... 47 0.001 UniRef50_Q7NQT3 Putative uncharacterized protein n=1 Tax=Chromob... 47 0.001 UniRef50_B1XZS2 Lipopolysaccharide biosynthesis protein n=1 Tax=... 47 0.001 UniRef50_B3EME9 Capsular exopolysaccharide family n=3 Tax=Chloro... 47 0.001 UniRef50_Q1J1I9 Protein-tyrosine kinase n=3 Tax=Deinococcus RepI... 47 0.001 UniRef50_P58593 Putative tyrosine-protein kinase epsB n=7 Tax=Bu... 47 0.001 UniRef50_A9EXV4 Protein tyrosine kinase n=1 Tax=Sorangium cellul... 47 0.001 UniRef50_B6QYR5 Succinoglycan biosynthesis transport protein Exo... 47 0.001 UniRef50_B7J3H5 Chain length determinant family protein n=2 Tax=... 47 0.001 UniRef50_A9WAT9 Lipopolysaccharide biosynthesis protein n=2 Tax=... 47 0.001 UniRef50_A4SDR9 Lipopolysaccharide biosynthesis protein n=2 Tax=... 46 0.002 UniRef50_A5FN30 Lipopolysaccharide biosynthesis protein n=1 Tax=... 46 0.002 UniRef50_A3WGE3 WcbD n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WGE3... 46 0.002 UniRef50_A3VCH3 Putative uncharacterized protein n=1 Tax=Rhodoba... 46 0.002 UniRef50_C8SQQ9 Lipopolysaccharide biosynthesis protein n=1 Tax=... 46 0.002 UniRef50_B8KAQ4 Chain length regulator (Capsular polysaccharide ... 46 0.002 UniRef50_Q2BP10 Chain length regulator (Capsular polysaccharide ... 46 0.002 UniRef50_B2JKP4 Exopolysaccharide transport protein family n=1 T... 46 0.003 UniRef50_Q97SJ6 Capsular polysaccharide biosynthesis protein cps... 46 0.003 UniRef50_B9X9K9 Polysaccharide export protein n=1 Tax=bacterium ... 46 0.003 UniRef50_UPI00016A48EE exopolysaccharide transport protein famil... 46 0.003 UniRef50_O52788 Tyrosine-protein kinase ptk n=4 Tax=Acinetobacte... 46 0.003 UniRef50_C8S386 Capsular exopolysaccharide family n=1 Tax=Rhodob... 46 0.003 UniRef50_C4LLU0 Putative uncharacterized protein n=1 Tax=Coryneb... 46 0.003 UniRef50_C7PAG1 Lipopolysaccharide biosynthesis protein n=1 Tax=... 46 0.004 UniRef50_B2J3C6 Lipopolysaccharide biosynthesis protein n=5 Tax=... 45 0.004 UniRef50_A9EY54 Succinoglycan biosynthesis transport protein exo... 45 0.004 UniRef50_Q390Y9 Exopolysaccharide transport protein n=30 Tax=Bur... 45 0.004 UniRef50_B3QD29 Capsular exopolysaccharide family n=3 Tax=Rhodop... 45 0.004 UniRef50_A1WZL7 Lipopolysaccharide biosynthesis n=1 Tax=Halorhod... 45 0.005 UniRef50_Q5SKK2 Putative uncharacterized protein TTHA0641 n=1 Ta... 45 0.005 UniRef50_Q15NN8 Protein-tyrosine kinase n=1 Tax=Pseudoalteromona... 45 0.005 UniRef50_Q13QA8 Protein-tyrosine kinase n=3 Tax=Burkholderia Rep... 44 0.007 UniRef50_B0P2G1 Putative uncharacterized protein n=1 Tax=Clostri... 44 0.007 UniRef50_B2I037 ATPase n=12 Tax=Acinetobacter RepID=B2I037_ACIBC 44 0.007 UniRef50_C5NWJ9 Capsular polysaccharide biosynthesis protein Cps... 44 0.007 UniRef50_Q3K9H3 Tyrosine-protein kinase n=4 Tax=Pseudomonadaceae... 44 0.008 UniRef50_C5CVD8 Exopolysaccharide transport protein family n=2 T... 44 0.008 UniRef50_Q1NTS5 Lipopolysaccharide biosynthesis n=1 Tax=delta pr... 44 0.008 UniRef50_B1M5X9 Lipopolysaccharide biosynthesis protein n=1 Tax=... 44 0.008 UniRef50_Q989A8 Succinoglycan biosynthesis transport protein n=1... 44 0.008 UniRef50_A0NMI4 Probable succinoglycan transport protein n=1 Tax... 44 0.009 UniRef50_Q11F49 Lipopolysaccharide biosynthesis n=1 Tax=Chelativ... 44 0.009 UniRef50_B3PJL7 Putative chain length determinant protein EpsF n... 44 0.009 UniRef50_A3JHV6 Putative uncharacterized protein n=1 Tax=Marinob... 44 0.009 UniRef50_A0LGX2 Lipopolysaccharide biosynthesis n=1 Tax=Syntroph... 44 0.010 UniRef50_A7B2P0 Putative uncharacterized protein n=2 Tax=Clostri... 44 0.010 UniRef50_C0BRP2 Putative uncharacterized protein n=2 Tax=Bifidob... 44 0.011 UniRef50_A3W156 Putative succinoglycan biosynthesis transport pr... 44 0.011 UniRef50_UPI000182721C cryptic autophosphorylating protein tyros... 44 0.012 UniRef50_Q08U06 Chain length determinant protein n=1 Tax=Stigmat... 44 0.013 UniRef50_P33698 Succinoglycan biosynthesis transport protein exo... 44 0.013 UniRef50_B1FTG2 Exopolysaccharide transport protein family n=4 T... 44 0.013 UniRef50_B3QV13 Lipopolysaccharide biosynthesis protein n=1 Tax=... 44 0.013 UniRef50_Q0AE90 Lipopolysaccharide biosynthesis n=2 Tax=Nitrosom... 44 0.013 UniRef50_Q319N0 Uncharacterized protein involved in exopolysacch... 43 0.014 UniRef50_B2A1C4 Lipopolysaccharide biosynthesis protein n=1 Tax=... 43 0.015 UniRef50_Q1ING6 Protein-tyrosine kinase n=1 Tax=Candidatus Korib... 43 0.018 UniRef50_Q48452 Putative tyrosine-protein kinase in cps region n... 43 0.018 UniRef50_Q1QD59 Protein-tyrosine kinase n=3 Tax=Psychrobacter Re... 43 0.019 UniRef50_C8QGU5 Capsular exopolysaccharide family n=1 Tax=Pantoe... 43 0.019 UniRef50_A3VU42 Exopolysaccharide biosynthesis protein n=1 Tax=P... 43 0.020 UniRef50_B8D182 Lipopolysaccharide biosynthesis protein n=1 Tax=... 43 0.021 UniRef50_D0MGZ9 Lipopolysaccharide biosynthesis protein n=1 Tax=... 43 0.021 UniRef50_A5V900 Lipopolysaccharide biosynthesis protein n=1 Tax=... 43 0.021 UniRef50_C7RNN8 Chain length determinant protein EpsF n=2 Tax=Be... 43 0.021 UniRef50_C0QSZ0 Chain length determinant protein n=1 Tax=Perseph... 43 0.022 >UniRef50_P26266 Ferric enterobactin transport protein fepE n=158 Tax=cellular organisms RepID=FEPE_ECOLI Length = 377 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 377/377 (100%), Positives = 377/377 (100%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI Sbjct: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY Sbjct: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 Query: 121 LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT 180 LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT Sbjct: 121 LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT 180 Query: 181 SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL Sbjct: 181 SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 Query: 241 NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN 300 NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN Sbjct: 241 NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN 300 Query: 301 RQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR 360 RQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR Sbjct: 301 RQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR 360 Query: 361 YAMASRKQDAMMADHLV 377 YAMASRKQDAMMADHLV Sbjct: 361 YAMASRKQDAMMADHLV 377 >UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 Tax=Cronobacter RepID=C9XZM2_CROTZ Length = 377 Score = 352 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 183/377 (48%), Positives = 264/377 (70%), Gaps = 1/377 (0%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 MSS++IK A PDYPL E+DL L++VL++A+K ++++ F GL ++F+ Sbjct: 1 MSSIDIKNNPLASAPDYPLLDHPRAELDLFALVAVLFKARKMILSITALFIVMGLALAFL 60 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 LPQKWTS AVV+ PE Q EL++ L+VLD+D ID N+F+KKF S +L E++ Sbjct: 61 LPQKWTSEAVVSIPETRQLIELQRVLVDLQVLDVDAAIDAASLENMFLKKFDSRALQEKF 120 Query: 121 LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT 180 LR+SP+V Q+KEA+ D L RA+ +++++K + N + K S Y+SWTLSFTAP Sbjct: 121 LRTSPWVQAQVKEAQSDTESLERAVTLVAQRIK-MTSNDNPKAPTASPYSSWTLSFTAPK 179 Query: 181 SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 +++AQ VL YI+Y + V ++ LEN+R +E+K + E+ +L DR N+ IQRL Sbjct: 180 AQDAQRVLKEYINYAALAVQRQVLENLRTTIELKVKSEESRLMIDRNTLANEHKIAIQRL 239 Query: 241 NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN 300 NYSL +ANAAGIKKPVYSNGQAVKDDPD+SI+LGADG+ +KL IE+++TDV LN ++N Sbjct: 240 NYSLQVANAAGIKKPVYSNGQAVKDDPDYSIALGADGLAQKLAIERSITDVTALNAAIQN 299 Query: 301 RQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR 360 R+Y + +L K ++ DV+F PF YQ++PSLPVK DGPGKA+++IL+ L+G ++AC VL+R Sbjct: 300 REYRLAELKKLNLADVDFQPFHYQMAPSLPVKSDGPGKALVLILATLMGFIIACALVLVR 359 Query: 361 YAMASRKQDAMMADHLV 377 +A R+ AD L+ Sbjct: 360 DVIAQRQVHPAGADTLL 376 >UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yersinia RepID=A4TP85_YERPP Length = 383 Score = 349 bits (895), Expect = 9e-95, Method: Composition-based stats. Identities = 133/372 (35%), Positives = 219/372 (58%), Gaps = 3/372 (0%) Query: 1 MSSLNIKQGSDAHFP---DYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLI 57 MS+ + D+ P D+ S S NEIDL + SV++++K ++ + F +GL++ Sbjct: 1 MSNKQARSNLDSPIPNNYDFSNVSSSRNEIDLFEIFSVVFKSKFKIILITLFFLISGLVV 60 Query: 58 SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLL 117 S+ILPQKWTS A++ P Q Q L++ T L VLD+ + + + F + F S L Sbjct: 61 SYILPQKWTSTAIIALPGDEQVQVLDELITNLTVLDIKVDVSANYLLSTFKQNFDSQDLR 120 Query: 118 EEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFT 177 E+YL ++ Y +K D LD I + + + + K + + Y + LS++ Sbjct: 121 EQYLVNTNYFKRLMKNNPEDGLDKRALIERIVNENISSVNPLKDKTEGENEYRYYKLSYS 180 Query: 178 APTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANI 237 A T +A+ +L G I+Y++T+V + ++ +++ +K + + +K +N I Sbjct: 181 ASTPTDARDLLQGSINYVNTIVNADVFRKIQRAVDLAKGIGTDKYSMELLKARNNQKVKI 240 Query: 238 QRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGE 297 +RL Y+ IA+AAG+KKPVYSNG A+ DDPDF I++G+D + RKLEIEK+V D+A +N E Sbjct: 241 ERLRYASSIADAAGVKKPVYSNGSAISDDPDFPITMGSDALNRKLEIEKSVIDLASINTE 300 Query: 298 LRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGV 357 L NR+ +++L + + +VN PFKY P+ P K+D P +A+IVIL AL+G M + G V Sbjct: 301 LLNRKLYLDKLNRLEIPNVNIVPFKYLQQPTEPTKRDVPKRALIVILFALVGLMGSVGFV 360 Query: 358 LLRYAMASRKQD 369 L+ + + RK++ Sbjct: 361 LVEHFVRERKRE 372 >UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10 Tax=Yersinia RepID=C4UHK4_YERRU Length = 384 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 120/372 (32%), Positives = 213/372 (57%), Gaps = 3/372 (0%) Query: 1 MSSLNIKQGSDAHFPD---YPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLI 57 MS+ G + P+ + S S +EID+ L ++++R+K ++ V F +GL++ Sbjct: 1 MSNEIRHNGPASPKPNNYGFSDMSSSKDEIDIFELFTIIFRSKLKIILVTLIFLISGLVV 60 Query: 58 SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLL 117 S+ILPQKWTS +++ P Q Q L+K L VLD+++ I + F + F S L Sbjct: 61 SYILPQKWTSTSIIVPAGEEQLQVLDKITINLAVLDINLGITSNYLLSTFKQNFDSQDLR 120 Query: 118 EEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFT 177 E+YL ++ Y +K++ D ++ I + + K + Y + LS++ Sbjct: 121 EQYLINTDYFKQMMKDSPEDAIERRAVIENIVNNSIGSINPIKDKSGNDNEYRYYKLSYS 180 Query: 178 APTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANI 237 A T+ +A+ +L GYI+++++ V + ++ +++ +K + D ++ KN + I Sbjct: 181 ASTAVDARDLLQGYINFVNSTVNADVNLKIQRAVDLAKGMATDKYSLDLLRAKNSHEVKI 240 Query: 238 QRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGE 297 +RL Y+ IA+ AGIKKPVYS+G + DDPDF I++GAD + RKLEIEK++TD+ +N + Sbjct: 241 ERLKYASSIADVAGIKKPVYSSGSQISDDPDFPITMGADALNRKLEIEKSITDLTTVNAD 300 Query: 298 LRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGV 357 L NR+ +++L + V+ PFKY P+ P K+D P + +I++L AL G + + G V Sbjct: 301 LLNRKLYLDKLNALEIPKVDVVPFKYLQQPTEPTKRDAPKRGLIMVLFALAGLVGSVGFV 360 Query: 358 LLRYAMASRKQD 369 L+ + ++ R++ Sbjct: 361 LVGHFVSERERQ 372 >UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enterobacteriaceae RepID=B4F1Q0_PROMH Length = 372 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 142/375 (37%), Positives = 217/375 (57%), Gaps = 8/375 (2%) Query: 1 MSSLNIKQGSD----AHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLL 56 M+S K S HF D+ L N+EIDL L SVL+++K ++ + FA G Sbjct: 1 MNSKLSKPQSSEVDKGHFDDFYL--KQNDEIDLFELFSVLYKSKFVIIGITLLFAIVGFT 58 Query: 57 ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 116 ++ LPQKWTS A +T P + ++L + L ++D+D ++ + + FI + S L Sbjct: 59 VASFLPQKWTSQAAITKPMLDEMKQLRATLNDLSLVDVDTGVNASSVYQKFINNYNSRVL 118 Query: 117 LEEYLRSSPYVMDQLKEAKI-DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 175 EEYL ++ Y + L + LD + I + K + + SK DE LS Sbjct: 119 REEYLVNTDYYKNLLAKMDDPTPLDKRKLIETIVTKDINLKASDSKNSDE-EFSGEINLS 177 Query: 176 FTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDA 235 FTAPTSEEA +LSGYI +IST V E + + +++E K ++ D + N + Sbjct: 178 FTAPTSEEAYDLLSGYIRFISTKVRVEVKDEIDDQIERKLNHAQKAYQMDLERIANARNV 237 Query: 236 NIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELN 295 N+QRL Y+L+IANAAG+KKP+ S G +KDDPD+SI++GAD + KL I +A+TD ++ Sbjct: 238 NVQRLKYALEIANAAGVKKPISSEGAQIKDDPDYSIAMGADALSSKLAITEAITDPTTVS 297 Query: 296 GELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACG 355 EL+NR Y ++QL + + D+ F PFKY L P P KKD P +A+I++ +A +G +++ Sbjct: 298 SELKNRLYNIQQLEQIKLGDLQFVPFKYMLKPYEPTKKDAPKRALILVGAAFVGFILSVM 357 Query: 356 GVLLRYAMASRKQDA 370 GVLL Y +R++ A Sbjct: 358 GVLLGYMARNRRKTA 372 >UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4SZ47_YERIN Length = 372 Score = 315 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 116/349 (33%), Positives = 200/349 (57%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE 83 ++EIDL+ + S+L+RAKK ++ +V FA GL++ F LPQKWTS++V+ P + L+ Sbjct: 24 HDEIDLIEIFSMLFRAKKIIILIVVVFALIGLIVGFFLPQKWTSSSVIIAPTYSESMLLD 83 Query: 84 KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHR 143 +L+V +D ID +++ S L + +L+ + Y+ +K+ DE Sbjct: 84 NLLGELKVAGVDSGIDENYLLATYMQFCDSRILRDAFLQQTDYLKMLMKKNPNDEFKKQS 143 Query: 144 AIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKES 203 + +S + NA+ K + L F+A T + A+ +L GY++Y+ Sbjct: 144 LLDVISTNNITTESNANDKSASTKDNNYFRLKFSAQTPDSAKDLLQGYMNYVKESANAYI 203 Query: 204 LENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAV 263 L ++ L +K + E+ + + + +++ D I+RL Y+L IA AAG+KKPVYS+G A+ Sbjct: 204 LFKLQRSLALKLEAEQRLFSLESQRVQSRRDVRIKRLEYALSIAEAAGLKKPVYSSGAAI 263 Query: 264 KDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKY 323 DDPD+SI+LG D +++KL +EK++TD + +LRNR ++ L ++++ FTPFKY Sbjct: 264 LDDPDYSITLGGDALKQKLRVEKSITDPLTTSADLRNRAINIDLLRNIKIDNIEFTPFKY 323 Query: 324 QLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMM 372 P +P KKDGP + +I+++ IG +VA LLR + ++ A + Sbjct: 324 LQKPEVPTKKDGPKRLLILVIFTFIGLIVAIATALLRDGLVRHREIASL 372 >UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=Enterobacteriaceae RepID=Q7N0P7_PHOLL Length = 367 Score = 309 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 131/372 (35%), Positives = 224/372 (60%), Gaps = 7/372 (1%) Query: 1 MSSLNIK--QGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLIS 58 MS+ IK S+ +F Y S ++EIDL L SVL+++K ++ V FA G + + Sbjct: 1 MSNKPIKGTNFSEEYFNYY--NSKQDDEIDLFELFSVLFQSKLLIITVTILFAVIGFVAA 58 Query: 59 FILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLE 118 ++PQKW+S+A + P+ + Q L+ TKL VL+L + + +N F+ F S L E Sbjct: 59 SLMPQKWSSSASIVKPQLEEIQPLKDILTKLEVLNLQPSVTSSSLYNNFLNNFNSRVLRE 118 Query: 119 EYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTA 178 EYL ++ Y + + E+ + R ++ EK+ + ++S K ++ L+F+A Sbjct: 119 EYLVNTEYFKNLVAESGDHSPLVKRKLI---EKIVNDNISSSSKAEKDDENGETKLTFSA 175 Query: 179 PTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQ 238 T+E+A +L+GYIDY+S++V ++ + + ++ K + + + D + N +AN++ Sbjct: 176 GTAEDAYNLLNGYIDYVSSVVHEQVKSELSDMVKQKLNYSEGLYSVDLNRVNNIQEANVE 235 Query: 239 RLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGEL 298 RL ++L IAN+AGIKKP+ S G +KDDPD+SI+LGAD ++RKL+I + + D ++ +L Sbjct: 236 RLKHALSIANSAGIKKPISSEGAMIKDDPDYSIALGADALQRKLQITEEIKDPTLIDADL 295 Query: 299 RNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVL 358 RNR + +++L V+ VNF PF+Y +P P KD P + +I+I SA +G ++A VL Sbjct: 296 RNRLFYIKELKALKVDKVNFQPFRYMQAPYEPTAKDSPKRLLILIGSAFLGLILAVVSVL 355 Query: 359 LRYAMASRKQDA 370 +R+ + SR+Q A Sbjct: 356 IRHMVRSRQQAA 367 >UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 Tax=Edwardsiella RepID=C5BCN1_EDWI9 Length = 357 Score = 302 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 125/355 (35%), Positives = 207/355 (58%), Gaps = 1/355 (0%) Query: 16 DYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPE 75 + + +EIDLL+L+ VL++AK ++ V A AG + +LPQKWTS A + P + Sbjct: 4 QHVVPPLQQDEIDLLSLLLVLFKAKWVILGAVLVCALAGFAVKTLLPQKWTSYAELIPAQ 63 Query: 76 PVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAK 135 + + +L +LD+ + F++ ++S + EY+ + Y L A Sbjct: 64 ARELAAMNSELNQLALLDIKVNASPGWLIERFVQTYESQIVRREYIAQTDYYK-TLAAAL 122 Query: 136 IDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 195 D L R + +L++K + ++ + E YT + L +A +S+EA +L GYID++ Sbjct: 123 SDPLARERLLSSLAQKAFTLKNSQLDQATESKEYTYYRLGVSARSSQEAHALLQGYIDFV 182 Query: 196 STLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKP 255 + VV + N++N+L+ EK + +N I+RL+YSL +A AAGI KP Sbjct: 183 AARVVDDLRYNIKNQLDQTLAREKARYQLTLQNLRNDQQVKIRRLDYSLAVAQAAGISKP 242 Query: 256 VYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVND 315 +Y NG KDD DF ISLG +G+ +KL+IEK+ TD+ ELN L+N Q + +L++ H++D Sbjct: 243 LYGNGATFKDDDDFPISLGTNGLRQKLDIEKSQTDLTELNAGLKNSQQYIGRLSQVHLSD 302 Query: 316 VNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDA 370 + PFKY + PS+PV+K+ P A+IV+LSA+ G +++CG VL+R+A+ ++ A Sbjct: 303 LKIQPFKYLMLPSIPVQKEAPKGALIVLLSAMAGLLLSCGAVLMRHAITGQRTAA 357 >UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q4F4_PROST Length = 372 Score = 296 bits (758), Expect = 8e-79, Method: Composition-based stats. Identities = 113/354 (31%), Positives = 202/354 (57%), Gaps = 5/354 (1%) Query: 18 PLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPV 77 P S ++EIDL+ L +VL R K ++ + + + F LPQKW+S AVV PP Sbjct: 20 PFNSQQSDEIDLMALFAVLLRNKLLIIVITVVITLISIFVVFQLPQKWSSTAVVIPPSSE 79 Query: 78 QWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLK--EAK 135 + +++ +L VLD+ I + + FN FI +++S E Y+RS+ Y + + Sbjct: 80 EIKDINTLSAQLSVLDVKIDLSAQQIFNAFIDQYRSKVNQEAYVRSTNYFKKLSEQVNST 139 Query: 136 IDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 195 E + R + + + D + K++ S + L+F APT EAQ +LSGY+ Y Sbjct: 140 DKENEQQRLVNTIISNNIGLKDQS---KEKNSTSSDIILTFVAPTPSEAQDLLSGYVRYT 196 Query: 196 STLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKP 255 +T V ++ ++++N + + + E Q+ K +++ D ++RL ++DIA AAG++KP Sbjct: 197 ATKVREQFKKDIQNAIAQQLVYANETFKQEVTKIRSEYDVKVERLKRAIDIAKAAGVRKP 256 Query: 256 VYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVND 315 + S+ + DDPD+ I+LG + +E+KL IE D+A LN +L+ RQ+ ++ L++ ++ Sbjct: 257 IVSDSAIISDDPDYPIALGTEALEKKLAIELQNRDIALLNEDLQIRQHYIKNLSELDIDT 316 Query: 316 VNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQD 369 ++F P K+ L+P LP +KD P +I++LSA++G +++C VL R ++ Sbjct: 317 LDFIPAKFMLAPDLPTQKDSPKSVLIIMLSAILGFILSCAYVLSRELYRDYHKN 370 >UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Providencia RepID=D1P4F6_9ENTR Length = 375 Score = 290 bits (741), Expect = 8e-77, Method: Composition-based stats. Identities = 113/362 (31%), Positives = 192/362 (53%), Gaps = 7/362 (1%) Query: 8 QGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTS 67 + PD+ L N+EIDL+ L++VL++ K ++ + + LPQKWTS Sbjct: 12 KNQLEQNPDFQL--QKNDEIDLMALVAVLFKNKYLIIIFTVVITALSIGVVKTLPQKWTS 69 Query: 68 AAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYV 127 A++ P + +E+ + +L LD +I + +N FI +++S E+Y+RS+ Y Sbjct: 70 EAIIIQPTSEETKEISEFAARLSALDFNIDLGSARIYNEFITQYRSKVNQEDYVRSTEYY 129 Query: 128 MDQLKE--AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQ 185 L + K D + R + + + NA +K + S LSFTAPT+ EAQ Sbjct: 130 QSLLAKLGDKNDVQEEQRLVNRIISDSIKLKYNAKEKDSDDS---DIILSFTAPTAIEAQ 186 Query: 186 TVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLD 245 +L+GYI Y ++ V K + N + + + E L D K + D I+RL ++ Sbjct: 187 DLLNGYIRYTASQVRKRFKTEIDNAISRQLIYSVEALKNDTAKIQIAYDVKIERLKRAIT 246 Query: 246 IANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLV 305 IA AAGI +P+ + A+ DDPD+ I+LG++ +E KL IE D+A ++ +L+N + + Sbjct: 247 IAKAAGITRPIARDAVAINDDPDYPIALGSEALEEKLAIELKNRDLALISEKLQNSKMHI 306 Query: 306 EQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 + L +++F P ++ L+P LP+ KD P A+IV L A++G +++C VL R + Sbjct: 307 DNLNGLTTKELDFQPVRFILTPDLPIAKDSPKSALIVALGAILGLILSCAFVLGRDLYRN 366 Query: 366 RK 367 Sbjct: 367 YN 368 >UniRef50_UPI000197BC0B ferric enterobactin transport protein FepE n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197BC0B Length = 379 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 116/372 (31%), Positives = 199/372 (53%), Gaps = 8/372 (2%) Query: 1 MSSLNIKQGSD---AHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLI 57 MS+ + + N+EIDL+ L S+L + K ++ + + Sbjct: 7 MSNKQQPPQGNIEQKSPSAHQFQIQQNDEIDLMALFSILLKHKFLILIFTVVCIVVSVGV 66 Query: 58 SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLL 117 +LPQKW+S A+V PP + +E+ +L VLD+ I + FN F+ +++S Sbjct: 67 VKLLPQKWSSTAIVIPPASEELKEVNAFKAQLDVLDIPIDLSAQRIFNSFVDQYRSKVNQ 126 Query: 118 EEYLRSSPYVMDQLK--EAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 175 E Y+RS+ Y + + + K D + R + ++ + D + K++ S LS Sbjct: 127 ESYIRSTDYYHNLAEKIDPKDDVIAQQRLVNSIISNDIKIQDLS---KEKNSTSNDIVLS 183 Query: 176 FTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDA 235 FTAP EAQ +L GYI Y ++ V ++ + N + K + E L ++ K + + D Sbjct: 184 FTAPLPTEAQDLLEGYIRYSASKVRQQLKVEIDNMISEKLIYASESLKREVSKIQTEYDV 243 Query: 236 NIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELN 295 ++RL ++DIA AAGI+KP+ S+ A+ DDPD+ I+LG + +E+KL IE D+A ++ Sbjct: 244 KVERLKRAVDIAKAAGIEKPIASDSVAINDDPDYPIALGTEALEKKLLIETQNRDLALMS 303 Query: 296 GELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACG 355 L+NR+ ++ L + +++FTP K+ L+P LP+ KD P ++IV LSA++G +++C Sbjct: 304 ENLQNRKIYLDNLQEVTAKELDFTPVKFILTPDLPLHKDSPKSSLIVALSAILGLILSCA 363 Query: 356 GVLLRYAMASRK 367 VL R K Sbjct: 364 FVLSRELYRDYK 375 >UniRef50_A5KZS4 Regulator of length of O-antigen component of lipopolysaccharide chains n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5KZS4_9GAMM Length = 358 Score = 264 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 80/364 (21%), Positives = 154/364 (42%), Gaps = 24/364 (6%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPE---P 76 +N+EIDL L LW K ++ + F + + + + + W+S+A +T + Sbjct: 1 MYSANDEIDLRELFKALWDGKLIIILITAFFTASSIAFALLAQEWWSSSAKITKAQPQNL 60 Query: 77 VQWQELEKSFTK-----------LRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSP 125 +Q+ + F L +LD +D F FI F S + +L +S Sbjct: 61 AAYQQQVRQFQPVFNIYQEDGTVLVSKELDSLVDSKVLFQRFINAFNSTNNKRSFLDNSA 120 Query: 126 YVMDQLKEAKIDELDL--HRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEE 183 + + D+ A +E + + K S Y T++F T E Sbjct: 121 EFQEFKSSMAVGSSDMSVDEARAFRAEWFNRISAFTADNKGPNSPY---TINFQTMTKES 177 Query: 184 AQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYS 243 + +L+ YI V +++ N++ + K ++ + NQL R Y+ Sbjct: 178 SFELLAAYILATELNVHEDAFNNLQAIVNGKRNELVQQKRILESQASNQLLVETARAKYA 237 Query: 244 LDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQY 303 IA +AG+ +P+ Q + FSI LGA G++ K++ ++V +++ + L+ Sbjct: 238 AQIAKSAGVDRPI----QTGNEKELFSIDLGAKGLDAKVKALESVKNLSVIEPRLQEINA 293 Query: 304 LVEQLTKAHVN-DVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYA 362 + L ++ V F F++ + P+ +D P + +IV+ + IG + G VL+R+A Sbjct: 294 KLTMLNNLDIDRTVEFQTFRFLENVEQPITRDKPKRVLIVLFGSFIGMLFGAGFVLIRFA 353 Query: 363 MASR 366 Sbjct: 354 FRKE 357 >UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65UU8_MANSM Length = 396 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 84/365 (23%), Positives = 157/365 (43%), Gaps = 25/365 (6%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ---WQ 80 N+EIDL++LI VLW+ K V+ F FA + +F ++WTS A P+ + Sbjct: 35 NDEIDLIDLIKVLWQKKLVVILTSFFFALIAAIYAFTAKEQWTSKATTIAPKVADMGYYL 94 Query: 81 ELEKSFTK-LRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDEL 139 L + L + + K FN F S ++ E+ S + + E DE Sbjct: 95 SLRSEYANILNIKEFTSKDVVDNLFNNFRVALFSNNMKREFFAQSKWFQNYANENAKDED 154 Query: 140 DLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLV 199 + + + +K V KK +SF A T +EAQ VL+ YI++I+ V Sbjct: 155 AKQKLLSDILDKSLIVTIPDIKKNPNA---LGINISFAAETPKEAQEVLTEYINFINATV 211 Query: 200 VKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSN 259 + E + ++I + + + + T++ ++ L +LDIA +AGIK+ ++ Sbjct: 212 LTEDKIDFLADIKIAIDNLELQKDKIQRDTESVRQVQLENLTTALDIAKSAGIKEYSKTS 271 Query: 260 GQ-----------------AVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQ 302 G + D + LG ++ +++ V ++ +Q Sbjct: 272 GNVSIPQFALGDAQIPFTDSKLSDGSYLFMLGEKYLQAQVDTLTNNKVVYPVSFYTIEKQ 331 Query: 303 -YLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRY 361 L+ L + D T + Y SP P +D P + +++++ A++GG++ C VL + Sbjct: 332 VSLLNSLEQKANTDSKVTSYYYLTSPDYPTTRDWPKRVLLLLIGAVLGGVLGCLWVLGKQ 391 Query: 362 AMASR 366 + + Sbjct: 392 IFSQK 396 >UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae RepID=A6ADU0_VIBCH Length = 377 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 90/390 (23%), Positives = 180/390 (46%), Gaps = 33/390 (8%) Query: 1 MSSL-NIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISF 59 MSSL N +P+Y A P+N+EIDL L LW+ K ++ F A + + Sbjct: 1 MSSLANTPPVQPPQYPNY--AYPANDEIDLKELFLALWQGKWLIILCTLVFTVATITYAL 58 Query: 60 ILPQKWTSAAVVTPPEPVQ---WQELEKSFTKLRVL-----------DLDIKIDRTEAFN 105 + + W++ A V+ P+ +Q+ K + L + LD ID F Sbjct: 59 TVQEWWSAKAKVSQPQLQDIASYQQAVKRYQPLFDVYQEDGTIIISETLDSLIDAEVIFK 118 Query: 106 LFIKKFQSVSLLEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDNASKKK 163 F+++F + ++ ++ ++ K+ K D L E++K V Sbjct: 119 RFLQEFNANGTKLRFMETNTTFLELRKDLLNKDDPQRLQAFYEQWFERIKGVSIGE---- 174 Query: 164 DEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLA 223 ++TLSF + + +L Y+ +++ ++ ++ +++ + L K +++ Sbjct: 175 ---KEDGAFTLSFQSVDKISSLALLREYVQFVNQIINQQLKDDLNSILVAKYGELRQQET 231 Query: 224 QDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLE 283 + +T+ +L ++R Y+L+IA AA IK+PV Q + + F+I++G+ ++ K++ Sbjct: 232 NLQQQTQLRLQVELERTQYALNIAEAADIKQPV----QNLGEQEIFAINIGSRALKAKVD 287 Query: 284 IEKAVTDVAELNGELRNRQYLVEQLTKAHVN---DVNFTPFKYQLSPSLPVKKDGPGKAI 340 K++ D++ L Q + Q ++ + F Y P+ +D P +A+ Sbjct: 288 ALKSIKDLSVFEPRLAILQTKLSQFGLETLSAGTKWSINSFYYLEQAKQPLSRDKPKRAL 347 Query: 341 IVILSALIGGMVACGGVLLRYAMASRKQDA 370 IV+L +GGM+ VL+R+A S ++ A Sbjct: 348 IVVLGGFLGGMLGVAIVLVRFAFRSEEKRA 377 >UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C7A7_9GAMM Length = 351 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 87/355 (24%), Positives = 161/355 (45%), Gaps = 15/355 (4%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ 78 + + SN+EIDL L+ LW+ K T+ F ++ + Q WTS A VT + Sbjct: 7 VNNSSNDEIDLAELVKTLWQGKVTIALCSIVFTVCAIVYALTAQQWWTSDATVTRGQYKD 66 Query: 79 WQELEKSFTKLR----VLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEA 134 + T L V ++ + N FI +F + + +L + + K+ Sbjct: 67 TANIRSQVTNLYSVIDVSKVNNIFESGRLLNEFITEFNAFDNKKAFLEQNSIIEQYAKDD 126 Query: 135 KIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDY 194 +++ D + I ++K +D + + +K P++Y LSF A +SE A +L Y + Sbjct: 127 GVNKEDKGKFIAFWAKK---IDASLNDEKKRPNVY---KLSFEARSSEAAHDLLKAYSSF 180 Query: 195 ISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKK 254 I+ V E+ + +K+ Q +K K + A + + NY+LDIA +A + K Sbjct: 181 ITDQVRDEAFSVIASKIAHNKQILLASKESLELKAKEKQKALLLKTNYALDIARSAKVNK 240 Query: 255 PVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVN 314 P+ V F I LG +G++ + I K++ D++ L + + L+K +++ Sbjct: 241 PLA----DVNLTGVFPIQLGTEGLKEQSNILKSMKDLSFFEPSLTQIKIKLGLLSKIYLD 296 Query: 315 -DVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQ 368 D +Y P+ +D P +++I +L L+G M+ VLL+ A + Sbjct: 297 KDTAMKSVRYLKDIDYPISRDKPKRSLIAVLGFLLGMMLGVAIVLLKSAFNKNAK 351 >UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0GV84_VIBMI Length = 379 Score = 257 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 88/379 (23%), Positives = 171/379 (45%), Gaps = 30/379 (7%) Query: 6 IKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKW 65 + + H YP +N IDL L S LW+ K T++ +F F A + S + W Sbjct: 4 LPNNAPIHPNQYPSYYSGDNGIDLRELFSALWKGKWTIITSMFIFTFAAITYSLTAQEWW 63 Query: 66 TSAAVVTPPEPVQ---WQELEKSFTKLRVLD-----------LDIKIDRTEAFNLFIKKF 111 +S A VT P +Q++ + L L LD ID F F+++F Sbjct: 64 SSKATVTQPLLQDIAGYQKVVQRSQPLFDLHQQDGTIIVSEALDSLIDPEVIFKRFLQEF 123 Query: 112 QSVSLLEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLY 169 + +++++ + KE + + L E++K V KK++ Sbjct: 124 NANGTKRRFMQTNATFLALKKELLNQDNPESLQDFYEQWFERIKGV--PVGKKEE----- 176 Query: 170 TSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKT 229 +TLSF + + + T+LS Y+ +++ + ++ ++ N L K +++ R + Sbjct: 177 NIFTLSFQSVDKDSSLTLLSQYVQFVNQTINQQLNNDLFNTLVAKYGEIEQQENYLRQQA 236 Query: 230 KNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVT 289 + +L ++R Y+L IA AA I +P+ Q + + F+I++G+ ++ K++ K++ Sbjct: 237 QLRLQVELERTQYALAIAEAAAITQPL----QNLGEQEIFAINIGSRALKAKVDALKSIK 292 Query: 290 DVAELNGELRNRQYLVEQ--LTKAHVN-DVNFTPFKYQLSPSLPVKKDGPGKAIIVILSA 346 +++ + +L Q + Q L + + + F Y P + +D P +A+I +L Sbjct: 293 NLSVFDPQLAILQSKLSQFDLNELSTDIKWSINGFYYLDQPEQALTQDNPKRALITVLGF 352 Query: 347 LIGGMVACGGVLLRYAMAS 365 L GGM+ VL R+ Sbjct: 353 LFGGMIGVVIVLGRFIFRK 371 >UniRef50_C9P0E2 Regulator of length of O-antigen component of lipopolysaccharide chains n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9P0E2_9VIBR Length = 383 Score = 253 bits (646), Expect = 7e-66, Method: Composition-based stats. Identities = 86/382 (22%), Positives = 165/382 (43%), Gaps = 22/382 (5%) Query: 4 LNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQ 63 + + P P + P ++EIDL L+ LW K ++ FA ++ + + Sbjct: 5 IQQSPNEQQYSPQLPNSFPVSDEIDLRELLEALWNGKLIIIITTLVFAVGAVVFALNSQE 64 Query: 64 KWTSAAVVTPPEPVQ---WQELEKSFTK-----------LRVLDLDIKIDRTEAFNLFIK 109 W+S A VT +P +Q+ K F L +LD +D F F+ Sbjct: 65 WWSSKAKVTKAQPQDIAAYQQQVKQFQPVFDIYQDDGTVLVSEELDNLVDTEVLFKRFVD 124 Query: 110 KFQSVSLLEEYLRSSPYV---MDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEP 166 F S + ++L SS +L+ E + + A + K+D Sbjct: 125 AFNSSNNKRDFLDSSSEFRAFKAKLETETETETETEAEAEVTRQLYAAWFQKITVKQDGI 184 Query: 167 SLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDR 226 + + +S + T E + ++L+ YI I + +L N++ ++ K ++ Sbjct: 185 GKQSPYDISLQSTTKESSYSLLNEYIGIIKRKAHQNALNNLQAVVDGKRNELIQQKRILE 244 Query: 227 IKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEK 286 + N+L I+R +++DIA AAG+ +P+ +N F I LG +E K++ + Sbjct: 245 SQAVNKLVVEIERAKFAMDIAKAAGVTQPIRTNSSN----EIFGIDLGTKALEAKVKALE 300 Query: 287 AVTDVAELNGELRNRQYLVEQLTKAHVN-DVNFTPFKYQLSPSLPVKKDGPGKAIIVILS 345 V +++ + L+ ++ L ++ + F F++ S P+ +D P + +IVIL Sbjct: 301 LVKNLSVVEPRLQQINAKLDMLEYLKIDRSIRFQTFRFLESVDKPISRDKPKRTLIVILG 360 Query: 346 ALIGGMVACGGVLLRYAMASRK 367 L+GG + VL+R+A + Sbjct: 361 TLLGGTLGVAIVLIRFAFRREQ 382 >UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio splendidus LGP32 RepID=B7VHQ6_VIBSL Length = 374 Score = 253 bits (646), Expect = 8e-66, Method: Composition-based stats. Identities = 88/377 (23%), Positives = 164/377 (43%), Gaps = 24/377 (6%) Query: 7 KQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWT 66 ++ P P N+EIDL LW K ++ V F + + + + + W+ Sbjct: 4 PTQPQSYTPQNPPMYIPNDEIDLREFFKALWDGKLIIILVTALFTSSAIGFALLAQEWWS 63 Query: 67 SAAVVTPPEPVQ---WQELEKSFTKLRVL-----------DLDIKIDRTEAFNLFIKKFQ 112 S A +T E +++ K F + + +LD +D F F+ F Sbjct: 64 SEAEITNNELQDRVMYEQQVKKFQPVFSIYQSDGSARSSEELDFLVDSQIIFQRFVDLFN 123 Query: 113 SVSLLEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYT 170 S + + +L S + + + E+ +E + + + KKD S Y Sbjct: 124 SSNNKKAFLDESSEFQEIKDDSFSSASEVTEDTTRKLYTEWFERISASLRDKKDTSSPY- 182 Query: 171 SWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTK 230 L+F A T E + +LS YI + V ++ +++ + + ++ K + Sbjct: 183 --ILTFQATTKESSFDLLSSYISFTELQVRNDAFDHLEALVFGERNELFQQKMVLESKAR 240 Query: 231 NQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTD 290 N+L I+R +L IA AAG++ P+ S ++I LG+ ++ K++I K+V + Sbjct: 241 NRLLVEIERAQSALKIAKAAGVETPLLSG----NARDFYAIELGSKALQEKIKILKSVKN 296 Query: 291 VAELNGELRNRQYLVEQLTKAHVN-DVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIG 349 +A L L+ ++ L ++ V+F F+Y P +D P +A+IV+L L+G Sbjct: 297 LAVLEPRLQQITAQLDMLDSIKIDRTVDFHAFRYLSDVEQPTTRDKPKRALIVVLGTLLG 356 Query: 350 GMVACGGVLLRYAMASR 366 GM+ VL+R+A Sbjct: 357 GMLGVAIVLIRFAFRKE 373 >UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aeromonas hydrophila RepID=Q8KNM2_AERHY Length = 362 Score = 252 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 102/350 (29%), Positives = 168/350 (48%), Gaps = 15/350 (4%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQEL 82 S NEIDL L SVLWR K ++ + FA AG+ + + PQ W S + + PP + + L Sbjct: 23 SGNEIDLYELFSVLWRQKIQILMITVVFAIAGIGYALLAPQVWVSQSQIKPPSLQEVESL 82 Query: 83 EKSFTKLRVLDLDIKI----DRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 E +L + I ++ + F+ F S + ++L Y+ + A I + Sbjct: 83 ELRVNQLINAQIPATIFDSFNKAALYGDFVSNFNSFNNKRQFLIEKGYLDMDAEAAGITD 142 Query: 139 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 198 RA++ K V+ ++ D PS + TLSF A T+ EAQ L YI +I Sbjct: 143 DKGKRALLR-----KMVNGISAVALDAPS--DNITLSFGAATATEAQQRLEQYIAFIQQQ 195 Query: 199 VVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYS 258 + + + + + + + + T QL ++ R YSL I+ AAGI+ PV Sbjct: 196 EIVSKSKELETIWQNRIKILLSQYDSIKADTLTQLKDDVSRTEYSLRISRAAGIETPV-- 253 Query: 259 NGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNF 318 V+D F+I GA + KL++ K + ++ LN L + + + L + +F Sbjct: 254 ENLNVRDG--FNIEWGAKALAEKLKVLKELKNLELLNPALSDLRLQLSSLRAIKLEQQSF 311 Query: 319 TPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQ 368 F Y SPS P+ +D P + ++V+L+ L+GGM+ G VL R+A +Q Sbjct: 312 QSFSYLASPSEPLSRDKPKRPLVVVLATLLGGMLGIGIVLARHAFRRPEQ 361 >UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C5S1B1_9PAST Length = 378 Score = 250 bits (637), Expect = 9e-65, Method: Composition-based stats. Identities = 75/378 (19%), Positives = 140/378 (37%), Gaps = 31/378 (8%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ- 78 + +N+EIDL+ L+ LW K ++ + +F ++WTS A V P+ Sbjct: 7 MNSANDEIDLIELVKTLWDKKIWIIISTVICTAIAGIYAFTAKEQWTSKAEVIAPKVTDL 66 Query: 79 --WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKI 136 + + K + ++ + D F F +S+ E+ S ++ Sbjct: 67 GSYFNVRKEYARILGQEFDAGALANGLFAKFNLLSESLDERNEFFVQSDVYKKLIE--GK 124 Query: 137 DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 196 DE + L+ + A+ KK+ + +SF A T E+AQ L +I + S Sbjct: 125 DEKSQRSILSNLTRENIAITKPDPKKEPDL---IGRRISFLAETPEDAQLTLEKFIAFTS 181 Query: 197 TLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPV 256 + LEN L + + Q ++ L+ +L+IA AGIK Sbjct: 182 QSAYQLELENFLINLNEVLSDLTYEKTKFERDLSIQRSVQLENLHNALNIAKEAGIKDYA 241 Query: 257 YSNGQAVK--------------------DDPDFSISLGADGIERKLEIEKAVTDVAELNG 296 + G D + LG ++ ++++ + Sbjct: 242 KAFGATNDTALQAIAMSETKIPLSDSKLSDGTYLFMLGEKYLQAQIDVLTQKGVIYPPRY 301 Query: 297 ELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGG 356 + + V + F YQ SP PV KD P + I++ A+ GG+++ Sbjct: 302 YQVSELLKELEPLLVKVKEAKANAFSYQASPDYPVVKDKPKRLFILLGGAVAGGLLSALV 361 Query: 357 VLLRYAMASRKQDAMMAD 374 +++ Y KQ+ + D Sbjct: 362 LIMNYLF---KQNRRLED 376 >UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L7N8_TOLAT Length = 372 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 82/374 (21%), Positives = 160/374 (42%), Gaps = 21/374 (5%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 M++ Q ++ +P YP+ N+EIDL+ L LW+ K + V A + +F Sbjct: 1 MNNKEFPQQANMPYP-YPMPYQDNDEIDLVELFRTLWKQKAKIALVTAATTLVAGIYAFT 59 Query: 61 LPQKWTSAAVVTPPEPVQW-------QELEKSFTKLRVLDLDIKIDR--TEAFNLFIKKF 111 + WTS AV P+ + Q+L ++ K + + + D+ E F F K+ Sbjct: 60 AEEVWTSKAVFDAPKLEEIGSYYEFTQQLRRTLQKPTIGAITLIPDQITKEVFTEFQKQT 119 Query: 112 QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 171 S+ L E+ S Y + + K E D + + L EK V +K PS Sbjct: 120 NSIDLRREFWSQSDYYHNLVINIKS-EKDKEKKLDDLIEKNITVVPIDEQKVKFPS---- 174 Query: 172 WTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKN 231 +S + + A+ +L Y+D ++ V K ++ L+ + + + + + Sbjct: 175 --VSLSVNDATTAKELLIQYVDKLNAKVWKSKSTELKTILKEEVAELENEKKLLEFRAET 232 Query: 232 QLDANIQRLNYSLDIANAAGIKKPVYS--NGQAVKDDPDFSISLGADGIERKLEIEKAVT 289 + +I + + +A A IK+ S G A D LG ++ +++ Sbjct: 233 DRNNSIDIIRKAKSVAEKANIKELNLSAMQGNANVSSRDMLFFLGTKALDAQIDNLVNKP 292 Query: 290 DVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIG 349 + R ++ +L K V+ ++Y +PS P+ +DGP + +I+++S L G Sbjct: 293 VTMPVRYYEVER--MLTELKKLPEFKVDIKSYRYLQAPSEPLTRDGPKRTLIIVVSFLFG 350 Query: 350 GMVACGGVLLRYAM 363 +++C +L++ Sbjct: 351 MILSCIAILIKKVF 364 >UniRef50_Q3YTC2 O antigen chain length determinant protein n=5 Tax=Enterobacteriaceae RepID=Q3YTC2_SHISS Length = 346 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 79/344 (22%), Positives = 143/344 (41%), Gaps = 13/344 (3%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ- 78 + +EIDL L+ LW+ K ++ V + +F ++WT+ + P + Sbjct: 1 MPKAEDEIDLFELLGTLWKKKWVILCVTLLTTGLAAVYAFTAKEQWTAKTYIQAPRIAEL 60 Query: 79 --WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKI 136 + + +++ ++ LD F+ I +S ++L S+ Y KE Sbjct: 61 GSYLKFHQAYARILNQPLDTNALANGLFSDLILIAESPDTKVKFLESTEYYK---KETNN 117 Query: 137 DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 196 + + I + K + K+K S + + +A +++EA +L GY+ ++ Sbjct: 118 LSTEQDKKIWLAEQANKGLVITPPKEKGNTS---YYIIQASADSAQEAYKLLQGYLKNVN 174 Query: 197 TLVVKESLENV-RNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKP 255 V SL+ +N + KE + D + +LD I + L A AGI Sbjct: 175 NQAVTLSLDEFGQNVNTLLVNLNKEIIDIDFQRKSEKLD-QIAHIQRDLTTAEQAGIIDY 233 Query: 256 VYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVND 315 S G + LG + +L+ K + RQ +++L ++ Sbjct: 234 RSSKGGFDNAQSSYKFLLGEKLLSAELKATKDAPIIYPFRYYEVKRQ--IDELEGMLRDN 291 Query: 316 VNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLL 359 + ++YQ+ PS PV KD P KA+I+IL AL G M A G L+ Sbjct: 292 IQAQAYRYQMKPSEPVIKDKPNKALILILGALPGAMFAIVGTLV 335 >UniRef50_A1JMR4 O-antigen chain length determinant n=5 Tax=Yersinia RepID=A1JMR4_YERE8 Length = 363 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 172/373 (46%), Gaps = 39/373 (10%) Query: 11 DAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAV 70 + F Y L S + E+DL+ +IS+++R+ K + V+ F G + F P++WTS A+ Sbjct: 13 PSPFGKYILPS-NKEEVDLIEIISIIFRSSKLIFIVLAIFTLVGGGVVFFSPKEWTSYAI 71 Query: 71 VTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQ 130 V+ + Q LE + L VL++D+ I + F K + S +L +Y+ Sbjct: 72 VSVTSDGKMQPLESIESSLSVLNIDLNITADDLLMDFRKYYSSKDMLSKYMSK------- 124 Query: 131 LKEAKIDELDLHRAIVALSEKMKAVDDNASKKKD---EPSLYTSWTLSFTAPTSEEAQTV 187 EK+ A + K K+ + + ++ L++++ + V Sbjct: 125 -------------------EKVNANNFAGLKGKNINSDSDVKGNYILTYSSNLEYGLKDV 165 Query: 188 LSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIA 247 +GY++YI+ V + ++ ++ + E+ + +N+ IQRL Y+ IA Sbjct: 166 FTGYVNYINRKVNDNLNDQIKFTIDTAKKMATEEYNLALQQVENEHKIRIQRLEYAASIA 225 Query: 248 NAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQ 307 AAG++KP ++ IS+G D + R+LEIE+++TD+ +N +L N++ + + Sbjct: 226 KAAGLQKPAIGAFDISASSNNYPISMGYDLLNRQLEIERSITDLTSVNADLLNKKLYLNK 285 Query: 308 LTKAHVNDVNFTPFKYQLSPSLPVKKDGP---------GKAIIVILSALIGGMVACGGVL 358 +T ++ F Y PS P++ P + +I + IG + + VL Sbjct: 286 ITALQPVVIDVPTFNYLQEPSDPLQHSVPSEPILQNSRKGLLTIISFSFIGLIGSITFVL 345 Query: 359 LRYAMASRKQDAM 371 +R+ + R + Sbjct: 346 MRFFVRERHNSRL 358 >UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=174 Tax=Enterobacteriaceae RepID=WZZE_ECO57 Length = 348 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 74/356 (20%), Positives = 135/356 (37%), Gaps = 23/356 (6%) Query: 13 HFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVT 72 P P A + NE+D+ L LW K ++ + AFA L +F Q+W+S A+ Sbjct: 4 PMPGKP-AEDAENELDIRGLFRTLWAGKLWIIGMGLAFALIALAYTFFARQEWSSTAITD 62 Query: 73 PPEPVQWQELEKSFTKLRVLDL-------DIKIDRTEAFNLFIKKFQSVSLLEEYLRSSP 125 P LR LD+ D EA+ F+ + S E+ + Sbjct: 63 RPTVNMLGGYYSQQQFLRNLDVRSNMASADQPSVMDEAYKEFVMQLASWDTRREFWLQTD 122 Query: 126 YV-MDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEA 184 Y + +K D L I + + ++ A T+ +A Sbjct: 123 YYKQRMVGNSKADAALLDEMINNIQFIPGDFTRAVND-----------SVKLIAETAPDA 171 Query: 185 QTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSL 244 +L Y+ + S + ++ +T K ++ + K D + + +L Sbjct: 172 NNLLRQYVAFASQRAASHLNDELKGAWAARTIQMKAQVKRQEEVAKAIYDRRMNSIEQAL 231 Query: 245 DIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYL 304 IA I + D + LG ++ +LE +AV +L+ + + + Sbjct: 232 KIAEQHNISRSATDVPAEELPDSEM-FLLGRPMLQARLENLQAVGPAFDLDYD--QNRAM 288 Query: 305 VEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR 360 + L D F ++Y +P PVK+D P +A ++I+ ++GG++ G L R Sbjct: 289 LNTLNVGPTLDPRFQTYRYLRTPEEPVKRDSPRRAFLMIMWGIVGGLIGAGVALTR 344 >UniRef50_A7JUL8 O-antigen chain length determining protein n=2 Tax=Pasteurellaceae RepID=A7JUL8_PASHA Length = 375 Score = 236 bits (603), Expect = 8e-61, Method: Composition-based stats. Identities = 87/373 (23%), Positives = 149/373 (39%), Gaps = 35/373 (9%) Query: 21 SPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ-- 78 S++EIDL+ + LW K ++ F + +F ++WTS A V P+ + Sbjct: 9 EQSSDEIDLIEIFRALWDKKWWIVITTFITTLLAGIYAFTAKEQWTSKATVIAPKLTELG 68 Query: 79 -WQELEKSFTK-LRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKI 136 + + + +++ LRV +D FN F + QS E+ +S + Sbjct: 69 EYLNVRREYSRILRVDPVDPNALSASLFNNFNRLAQSQDTKNEFFITSNVYKTLAE--GK 126 Query: 137 DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 196 DE + LS + + +KK TLSF+A T EAQ L + +I+ Sbjct: 127 DEQGQRTVLSNLSNENTSFIIPDAKKDPNA---IGRTLSFSAETPMEAQDTLGKLVQFIN 183 Query: 197 TLVVKESLENVRNKLE---IKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIK 253 + LE+ + Q+EK + +D K+ ++ LN + + A AGIK Sbjct: 184 SKAFAVELEDFLVDFQNVLTALQYEKSLIQEDLSVNKS---VQLENLNKAYETAQKAGIK 240 Query: 254 KPVYSNGQAVKD-------------------DPDFSISLGADGIERKLEIEKAVTDVAEL 294 + + Q+ D + LG ++ ++++ V Sbjct: 241 EYSKAFNQSDASNIAAALSDTKISLSDSKLADSSYLFMLGEKYLKAQIDVANEKGVVYPP 300 Query: 295 NGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVAC 354 + Q + V F YQ SP PV KD P K II+++ A IG M++C Sbjct: 301 RYYQIDYQLKQLEPLFEKTKTVKTQTFSYQASPDYPVIKDKPKKVIILLIGAFIGLMISC 360 Query: 355 G-GVLLRYAMASR 366 +L Y +AS+ Sbjct: 361 LSIILTHYLLASK 373 >UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycetemcomitans RepID=Q9JRS3_AGGAC Length = 369 Score = 227 bits (578), Expect = 5e-58, Method: Composition-based stats. Identities = 76/370 (20%), Positives = 146/370 (39%), Gaps = 35/370 (9%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPP---EPVQWQ 80 N+EIDL+ LI VLW + ++ F + F ++WTS A + P E + Sbjct: 8 NDEIDLVELIKVLWNKRLWIILFSLFFTTIAGIYVFTAKEQWTSKAEIIAPRITELGDYF 67 Query: 81 ELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELD 140 ++K + ++ + D + F F +S+ +++ S + + E + Sbjct: 68 LVKKEYARILGSEFDASMTANNLFGQFNLLSESLDERKKFFEKSDFYKKE--SEGKSERE 125 Query: 141 LHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVV 200 + + L K A+ +KK + +SF A T EAQ VLS +I ++ Sbjct: 126 KLQILFDLMTKNIAIKKPDTKKYPDL---IGNQISFYAETPIEAQNVLSKFISTVNISAY 182 Query: 201 KESLENVR---NKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVY 257 + L+ N++ +EK K +D + ++ L +L+IA AGIK+ Sbjct: 183 QIELDKFLTDFNEIIADLNYEKIKFERDL---RIHKSVQLKNLESALNIAKEAGIKEYSK 239 Query: 258 SNG---------------------QAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNG 296 S + D + LG ++ ++++ K + Sbjct: 240 SFSIADPQLVLQAIAVSEAKVPLSDSKLSDSTYLFMLGETYLKAQIDVLKNNNIIYPPRY 299 Query: 297 ELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGG 356 + Q + V F YQ SP PV +D P K +I+ + ++G ++ Sbjct: 300 YQVSSQLSELEPLLIKAKQVKANAFSYQASPDYPVVRDKPKKLLILSIGFILGLILGSIY 359 Query: 357 VLLRYAMASR 366 +L R ++++ Sbjct: 360 ILFRKLVSNK 369 >UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropneumoniae RepID=B0BR52_ACTPJ Length = 370 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 83/372 (22%), Positives = 149/372 (40%), Gaps = 30/372 (8%) Query: 18 PLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPP--- 74 +++ +N EIDL+ L+ VLW+ K + V F + +F +KWTS V P Sbjct: 6 QVSNQTNEEIDLIELVRVLWKKKLLIAIVTCIFTALAAVYAFTAKEKWTSQTEVIAPRVT 65 Query: 75 EPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEA 134 + ++ L K + + + R E LF + S + +++ + Sbjct: 66 DISEYLSLRKEYNLIIGSEFKENEIRNELSELFSRYVLSYDEAIAFFKTTDTYKKLAE-- 123 Query: 135 KIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDY 194 +E+ L RA+ + + V +KK D +L + +SF T+ AQT L+ +I + Sbjct: 124 TENEVGLQRAVAEFTTESLKVIKPDAKK-DPNALGSKIAISF--DTALSAQTTLNDFICH 180 Query: 195 ISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKK 254 IS S ++ + Q IQ L +LD+A AGIK+ Sbjct: 181 ISDTSFNFSKNEFIYWIKESISSLNYEKEVIEQDQSIQRKVQIQNLETALDMAKKAGIKE 240 Query: 255 PVYSN------------------GQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNG 296 + + D + LG ++ +L+I K V + Sbjct: 241 YSSALSSNSSVANLAVSDTKIPLSDSKLADGTYLFMLGEKNLQAQLDIAKTKEIVY--SP 298 Query: 297 ELRNRQYLVEQLTKA--HVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVAC 354 Q + +L V V F Y SP LP+K+D P + I++++ A+IGG+++ Sbjct: 299 RYYQIQEQLLKLNTLLPKVEKVTGQSFSYISSPELPIKRDWPKRFILLLIGAVIGGVLSS 358 Query: 355 GGVLLRYAMASR 366 V+ + + Sbjct: 359 LWVIGKQIFGQK 370 >UniRef50_Q8KN75 Wzz n=1 Tax=Pseudomonas aeruginosa RepID=Q8KN75_PSEAE Length = 344 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 71/356 (19%), Positives = 137/356 (38%), Gaps = 25/356 (7%) Query: 18 PLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPV 77 P P + +IDL+ L + R K + + ++ +F + + A V PP Sbjct: 7 PRVVPIDGQIDLVELAQGILRQKWLIASFFLLATALAVVYAFYSRPIYEARASVLPPSLN 66 Query: 78 QWQ--ELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAK 135 + L + + L V + + +++FI+ + + + + + L + Sbjct: 67 EISGFNLGRKESDLGVFSV------KDIYDVFIRNLMAEETRQNFFKEK--YLPTLGDKG 118 Query: 136 IDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 195 + LD ++KA D + + +S A S+ A ++ YI+ + Sbjct: 119 AESLDALYNKFNDELQIKASVDGS----------GRYLISAVAHESDTAAYLVDSYIEMV 168 Query: 196 STLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKP 255 + + E L+N++ L +K+ ++++ R K + + I RL +L IA A I+ P Sbjct: 169 AGISKNEMLKNIKRDLHVKSVNLEQQINIMRAMAKTRREDTILRLREALKIAEALKIENP 228 Query: 256 VYSNGQAVKDDPDFSI-----SLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTK 310 GQ + I GA + ++ +A G LR Q TK Sbjct: 229 PSFEGQTERQLSSIMIGELMYMRGAKALRAEISSLEARESDDSFIGGLRALQERYALYTK 288 Query: 311 AHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASR 366 ++ + ++ K P K II++L A+ G + C LLR R Sbjct: 289 LSPDESQVSVYRKDGVVETSDKPIKPKKLIIIVLGAVFGIFLGCLVGLLRIVQFRR 344 >UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VMI6_ACTSZ Length = 346 Score = 213 bits (543), Expect = 6e-54, Method: Composition-based stats. Identities = 85/365 (23%), Positives = 153/365 (41%), Gaps = 26/365 (7%) Query: 12 AHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVV 71 F ++P +NEIDL++LI VLW+ K TV+ F FA + +F +KWTS A V Sbjct: 1 MTFSNHPSIPQQSNEIDLIDLIKVLWKKKLTVILSAFLFAIIAAIYAFTATEKWTSTAEV 60 Query: 72 TPPEPVQWQELEK---SFTKLRVL-DLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYV 127 P V F ++ L D+ + + F + S + + S Sbjct: 61 IAPTGVDMGAYGNAKLRFAQIAKLPDITVDTVSKSLYAKFDRLAFSQNERRNFFSQSDEY 120 Query: 128 MDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTV 187 +++ DE + + AL+ + AV KK + +SF+A T E AQ Sbjct: 121 KGLIQDQ--DEKAQRKILSALTTEYTAVVRPDPKKNADMFGN---KISFSAQTPENAQKT 175 Query: 188 LSGYIDYISTLVVKESLENVRNKLEIK---TQFEKEKLAQDRIKTKNQLDANIQRLNYSL 244 L+ ++D+I+ + + K+ + EK+++ + + K Q N + LN Sbjct: 176 LAQFVDFINEKAFELDKNEFQMKIAQQIDNLTNEKKEIEESLVVQKEQNTENAKPLNAIP 235 Query: 245 DIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYL 304 + S+ + D + G D +L I + +L+ Q Sbjct: 236 QSLPQTNLNSASQSSQDSALDPAMALLVYGDDYSRMQLRIITGQIN------QLKALQNA 289 Query: 305 VEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMA 364 V+ LT + YQ SPS PV++D P + I++++ A++GG++ C V+ + + Sbjct: 290 VKGLTA--------QTYTYQASPSYPVQRDWPKRVILLLVGAVLGGILGCVWVIGKQILG 341 Query: 365 SRKQD 369 + Sbjct: 342 GNNNE 346 >UniRef50_Q1Z8B9 Ferric enterobactin transport protein n=1 Tax=Photobacterium profundum 3TCK RepID=Q1Z8B9_PHOPR Length = 349 Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats. Identities = 71/365 (19%), Positives = 152/365 (41%), Gaps = 26/365 (7%) Query: 14 FPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTP 73 P N+EI + + L +K ++ + +F + W+S+ ++T Sbjct: 1 MPSQIPNGNGNSEIGINFFMQCLQNSKWLLILCSLLTGIVASIYAFNSQEWWSSSEIITE 60 Query: 74 PEPVQWQELEKSFTKLRVL-----DLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVM 128 L + L ++ L+ + F FI ++ E++ S+ + Sbjct: 61 ANYNDLSSLRNDVSPLFIVAAKTEKLEKIFSPNKIFIDFINEYNKPLTKSEFILSNDLLK 120 Query: 129 DQLKEAKIDELDLHRAIVA-LSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTV 187 ++ K++E A V S K+K KK+ + ++ L F + ++EE+Q + Sbjct: 121 IKMSNQKLEEEQQKNAFVKFWSNKIKY------KKQGD-----NFKLIFESNSAEESQLL 169 Query: 188 LSGYIDYISTLVVKESLENVRNKLE--IKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLD 245 LS Y ++ V +++V++++ + K + + +K +L+ I +L +L Sbjct: 170 LSQYSKFVHERVKNNIIDDVKSRIVSLVSLLEVKNDVLNEAVKANIKLEVEITKL--ALS 227 Query: 246 IANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLV 305 + A+ P+ + V D I LG+ + K ++ AV D + + E+ + + Sbjct: 228 VTKASNFSNPI----ENVNGDNFLPIELGSKALSEKYKVLSAVDDFSIFDPEIHRIKSEI 283 Query: 306 EQLTKAHVN-DVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMA 364 + L VN ++ F Y LP+ D P +++IVI+ IG + C + R + Sbjct: 284 KMLNDIDVNYEMEFNVIGYVNVAELPLNSDKPKRSLIVIIGLFIGLFLGCVISVYRESSR 343 Query: 365 SRKQD 369 ++ Sbjct: 344 YYNKE 348 >UniRef50_P35272 Chain length determinant protein n=110 Tax=Enterobacteriaceae RepID=WZZB3_ECOLX Length = 325 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 83/349 (23%), Positives = 150/349 (42%), Gaps = 37/349 (10%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQW 79 + +IDL++L+ LWR K T++ V + + +KWTS A++T P+ Q Sbjct: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQI 70 Query: 80 QELEKSFTKLRVLDLDIKIDRTE-AFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 + + D E F F + Sbjct: 71 AGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSA------------------------- 105 Query: 139 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 198 L + E K + + K + P T+S+ T+E AQ L+ YI + Sbjct: 106 --LAETLDNQEEPEKLTIEPSVKNQQLP-----LTVSYVGQTAEGAQMKLAQYIQQVDDK 158 Query: 199 VVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYS 258 V +E +++++ + + + ++ L + + Q D I+++ +L AN A + KP Sbjct: 159 VNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQ 218 Query: 259 NGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNF 318 Q V D F LG++ +E ++ E V N + RQ L++ + V+ ++ Sbjct: 219 QTQDVTQDTMFL--LGSEALESMIKHEATRPLVFSSNYY-QTRQNLLD-IDNLDVDKLDI 274 Query: 319 TPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRK 367 ++Y + P+LP+++D P KAI +IL+ L+GGMV G VL R A+ + Sbjct: 275 HAYRYVMKPTLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYN 323 >UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 Tax=Photobacterium angustum S14 RepID=Q1ZRK1_PHOAS Length = 347 Score = 205 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 74/332 (22%), Positives = 142/332 (42%), Gaps = 21/332 (6%) Query: 30 LNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKL 89 L + W+ K ++ FA AG+ ++ WTS AV+T + + ++ L Sbjct: 21 LEWVLCFWQKKFLIVITTLIFAVAGVSYAYYAQSWWTSTAVITTNKARDIRIFSENIDNL 80 Query: 90 RVLD-----LDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRA 144 V + +D F+ F + + E+L + + K L R Sbjct: 81 YVNSGVGGLVSQALDEKRLLRTFVNYFNAYNNKLEFLEGNKSIKSDFINEKEKHDFLQRF 140 Query: 145 IVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESL 204 I + + +K ++LS+TA +S ++ +LS YI++I+ V KE + Sbjct: 141 IKRI-----------NSEKVGNDSQVLYSLSYTATSSIKSHDLLSEYINFINEKVNKEVV 189 Query: 205 ENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVK 264 ++++ + + + E +I + + A I + +Y+L IA AA +KKP+ G + Sbjct: 190 SSLKSDINNQMKRLTESTVSLKINAEVKQHAEILKTDYALKIAEAADLKKPIAELGNS-- 247 Query: 265 DDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVN-FTPFKY 323 F+I +G DG++ K I D+A ++ Q + L ++ F +++ Sbjct: 248 --QIFNIEIGTDGLKEKSLILHNSKDLALFEPQIDIAQAQINFLKDINLEKAKPFNAYRF 305 Query: 324 QLSPSLPVKKDGPGKAIIVILSALIGGMVACG 355 S P+ + P K II++ S + G V C Sbjct: 306 VKDVSYPMSQAYPSKLIIILFSIIFGFSVGCF 337 >UniRef50_Q2BJF5 O-antigen chain length regulator n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJF5_9GAMM Length = 353 Score = 203 bits (516), Expect = 9e-51, Method: Composition-based stats. Identities = 73/363 (20%), Positives = 135/363 (37%), Gaps = 23/363 (6%) Query: 13 HFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVT 72 H P++PL N+ IDL L LWR+K ++ + G SF+ + S+AV+ Sbjct: 5 HSPEHPL----NDHIDLFFLFLQLWRSKLLILGITALITLCGAAYSFLSTPIYQSSAVLA 60 Query: 73 PPEPVQWQELEKSFTKLRVL----DLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVM 128 P E+ K T L+ + + T+ F FI S +L S P ++ Sbjct: 61 SPSESDLIEIRKIHTLLQQIIYSETASEEASTTDIFGQFISALNSNRYKNSFL-SKPELL 119 Query: 129 DQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVL 188 D + +L + + + T+S + E + + L Sbjct: 120 DHFRNDNTTQLQARKEF----------NRALKVTLPDTEEINHITISLRTKSPELSSSWL 169 Query: 189 SGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIAN 248 + YI + KE N++ ++ + + + L I+ + +L IAN Sbjct: 170 NEYISFAHQQFSKELTNNLQARIHAAQNNLLLTIQSKKANYHSNLIEEIKSIEEALIIAN 229 Query: 249 AAGIKKPVYSNG----QAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYL 304 G+ P+ + Q + D LG+ + +L KA + L + + Sbjct: 230 EIGLVNPLKTETNFGKQHIIDQMRGIYRLGSKSLNAELNALKAREKNLDNIPGLSDEKLK 289 Query: 305 VEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMA 364 +E L ++ + L+ K P K II++LS + G ++ VL + Sbjct: 290 LELLANIDLDSKLISAMILDLAAEPAPKPIEPRKTIIILLSIVAGLLIGIMTVLAGNLVR 349 Query: 365 SRK 367 R+ Sbjct: 350 HRR 352 >UniRef50_A1SRR6 Chain length determinant protein-like protein n=2 Tax=Psychromonas RepID=A1SRR6_PSYIN Length = 347 Score = 201 bits (511), Expect = 3e-50, Method: Composition-based stats. Identities = 69/356 (19%), Positives = 144/356 (40%), Gaps = 40/356 (11%) Query: 45 AVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL------------ 92 + + + + W + V P+ L K+ + Sbjct: 1 MICAVGIAGSVYYALNAQEWWVAKGKVIAPQVNDVAALYAQSNKVSAILNSNDLLNSNSN 60 Query: 93 -----------DLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKID---- 137 +L + + F FI F S + +L ++P + L+ +I Sbjct: 61 NNGQDTKQVSKELVDLFEPSTLFRNFINAFNSTINKKHFLETNPAFLAYLQVKQITVPSK 120 Query: 138 ---ELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDY 194 + + ++ L+ M ++ + + + E LSF + T E + +L+ YI + Sbjct: 121 GSAQESRQQYLIVLNNWMNKINASLNSQTSE------LALSFRSATKESSAELLNEYILF 174 Query: 195 ISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKK 254 I V + LE ++ + L K + +L +Q+ Y+ IA+ +G+ + Sbjct: 175 IGENVRENQLEKFLLFIDSAKNELQVSLQMTEQKARRELAVLLQKTEYAYQIASHSGLVE 234 Query: 255 PVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVN 314 K+ F I+LG ++ K+++ K++ D++ L L ++ L K + Sbjct: 235 Y---QANLNKEGELFQINLGEKALKAKIDVLKSIQDLSVLEPSLAIMTITLDALNKLEFS 291 Query: 315 D-VNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQD 369 D +FTP++Y P+ + P +A+IVIL+ L+ GM++ L+ Y M ++Q+ Sbjct: 292 DNSSFTPYRYLEVVEPPLNRSAPKRALIVILATLLAGMLSIFIALVHYFMTKKEQN 347 >UniRef50_Q04866 Chain length determinant protein n=30 Tax=Salmonella enterica RepID=WZZB_SALTY Length = 327 Score = 198 bits (502), Expect = 3e-49, Method: Composition-based stats. Identities = 86/347 (24%), Positives = 154/347 (44%), Gaps = 35/347 (10%) Query: 25 NEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEK 84 +IDL+ L+ LWR K T++ V + I +KWTS A++T P+ Q Sbjct: 16 EQIDLIELLLQLWRGKMTIIVAVIIAILLAVGYLMIAKEKWTSTAIITQPDAAQVATYTN 75 Query: 85 SFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRA 144 + L + +E FI +F S + L Sbjct: 76 ALNVLYGGNAPKI---SEVQANFISRFSS-----AF------------------SALSEV 109 Query: 145 IVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESL 204 + E+ K + + K + P ++S+ + T+E AQ L+ YI + V KE Sbjct: 110 LDNQKEREKLTIEQSVKGQALP-----LSVSYVSTTAEGAQRRLAEYIQQVDEEVAKELE 164 Query: 205 ENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVK 264 ++++ + ++T+ +E L + + Q D I+++ +L A+ A I +P Q V Sbjct: 165 VDLKDNITLQTKTLQESLETQEVVAQEQKDLRIKQIEEALRYADEAKITQPQIQQTQDVT 224 Query: 265 DDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQ 324 D F LG+D ++ ++ E A + + +Q L++ + V ++Y Sbjct: 225 QDTMFL--LGSDALKSMIQNE-ATRPLVFSPAYYQTKQTLLD-IKNLKVTADTVHVYRYV 280 Query: 325 LSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAM 371 + P+LPV++D P AI ++L+ L+GGM+ G VL R A+ S K A+ Sbjct: 281 MKPTLPVRRDSPKTAITLVLAVLLGGMIGAGIVLGRNALRSYKPKAL 327 >UniRef50_C4K3Z7 Regulator of length of O-antigen component of lipopolysaccharide chains n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K3Z7_HAMD5 Length = 308 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 86/348 (24%), Positives = 159/348 (45%), Gaps = 67/348 (19%) Query: 21 SPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQ 80 PS +EIDL++L+++ ++ K + + F LI + LP+KWTS A++T + Q Q Sbjct: 27 KPSTDEIDLIDLLAIFFKNKVKIFFITIFFVIVSALICYKLPEKWTSKAIITYIDDNQLQ 86 Query: 81 ELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELD 140 E KL++ D+ + D+ +LFI+ F S L E+YL ++ Y +K+ + Sbjct: 87 PFELLSYKLKLFDISLNFDQKNLLSLFIQLFNSNVLKEKYLVNTSYFQKLIKDHPENRNQ 146 Query: 141 LHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVV 200 I+ K ++ + S K+++ Y +TLS++A T+++AQ +L+GYI+YIS + Sbjct: 147 FMLDII----KNIHIEYSKSNKENDFKGYVFYTLSYSADTAKDAQNLLNGYINYISAIFD 202 Query: 201 KESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNG 260 ++ + NK+ IK + G Sbjct: 203 EKLNNKITNKINIKKSVLSFIIDN----------------------------------KG 228 Query: 261 QAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTP 320 ++ DD + ++ + +E+L ++D+ P Sbjct: 229 MSINDDVNLPMA-----------------------------KLQLEKLQSIKLSDIKIIP 259 Query: 321 FKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQ 368 F+Y P+ PVKKD P A I++LS + G MV+ VL+++ ++ R + Sbjct: 260 FEYLQKPNEPVKKDSPQSAFIILLSGMAGLMVSMFYVLVQHYLSQRNK 307 >UniRef50_Q02PW5 O-antigen chain length regulator n=19 Tax=Pseudomonas aeruginosa RepID=Q02PW5_PSEAB Length = 360 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 59/325 (18%), Positives = 114/325 (35%), Gaps = 20/325 (6%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ 78 + NEID + LI LW K V ++ F A +F+ + + + PP Sbjct: 8 RQTSKRNEIDFIELIQGLWSQKWLVFSLTFLGAVLAGSYAFLSKPVYEARVALLPPSLSD 67 Query: 79 WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 + + L ++ +++F + QS ++ R + ++ ID Sbjct: 68 VAGFNIARGRDSGLP---PFTVSQVYSVFTRNLQSEGTRRQFFREVYLPSLEERKGSIDG 124 Query: 139 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 198 L +A D+ S + L +T+ E+A Y D + Sbjct: 125 L------------YRAFSDDVSVNRPSKDLPERYTVILNRQDPEQAAKWAKQYADLAALR 172 Query: 199 VVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYS 258 + E N + +LE+K++ +++ R K + + I RL +L +A A G++KP Sbjct: 173 SMDEMRGNAQRELEVKSRNILQQIDTLRQVVKERRNDRIVRLKEALQVARAVGVEKPPLI 232 Query: 259 NGQAVKD-----DPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHV 313 Q + + G +E +++ + T L Q + + Sbjct: 233 GAQIDQQLSAIMEGSLMYMRGTKALEAEIKALEKRTSDDPFIPALPGLQEQLALYESKQL 292 Query: 314 NDVNFTPFKYQLSPSLPVKKDGPGK 338 N F+ +P P K Sbjct: 293 NFDRVAVFRQDGGVEIPDDPIKPKK 317 >UniRef50_Q31F07 Lipopolysaccharide biosynthesis protein Wzz n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31F07_THICR Length = 364 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 69/362 (19%), Positives = 142/362 (39%), Gaps = 20/362 (5%) Query: 15 PDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPP 74 P + + ++EIDL L + L + K TV G + +F + + S A + PP Sbjct: 8 PHFEEKASMDDEIDLFELWNGLVQEKLTVFLSFLMIIGLGTIYAFSVTPVYKSDAYLLPP 67 Query: 75 EPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQL--- 131 + + Q++ + L + D + FN + + S + L + + + Sbjct: 68 KASEIQDINRLNATLGIGDA---YSVNDVFNTYTENLLSRARLLTFFKQHNLIAFYEPDF 124 Query: 132 --KEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLS 189 KE ++ E + + + E+ K+ + +++ + L+ Sbjct: 125 KNKEKEVREKEFNDSFSTFVEEFGITHPKDGAKRVMVEMTLPV-------DADQVKEFLT 177 Query: 190 GYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANA 249 YI I K+ ++ + + Q ++ + + + I RL+ S+ +A Sbjct: 178 QYIQKIRIETRKQITTDIFTRKQFLMQQLINQINAVKETAQKHREDKIARLDESIKVARQ 237 Query: 250 AGIKKPVYS----NGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLV 305 IK+P+ + N Q V++ LG +E + ++ K G+LR + Sbjct: 238 LKIKEPLSAGPAMNIQGVQNQGLPLYYLGYQVLEAEKDVLKKRKTDDAFTGKLRELEERY 297 Query: 306 EQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 L +N F P + +K P KA+I+ +S ++G M+ L+R A+ + Sbjct: 298 NLLDSVEINGDLFKVVNVDQPPEI-GEKVKPKKALILAVSGVLGLMLGIFIALIRRAIKN 356 Query: 366 RK 367 RK Sbjct: 357 RK 358 >UniRef50_P44063 Uncharacterized protein HI0866 n=7 Tax=Haemophilus influenzae RepID=Y866_HAEIN Length = 207 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 95/207 (45%), Gaps = 7/207 (3%) Query: 169 YTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIK 228 + ++F+A T + AQ+VL+ Y++++S + ++ + + ++ + Q Sbjct: 3 KIALKITFSAETPKYAQSVLTEYVNFVSQYSLNQTNQEFKQGFNLRLDELRFSKEQIEEN 62 Query: 229 TKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKD----DPDFSISLGADGIERKLEI 284 + ++ L +LDIA AGIK +S G + D D + L ++ +L+I Sbjct: 63 LTEEKKVQVENLTNALDIAKKAGIKD--FSRGNNISDSKLADGTYLFILAEKYLQAQLDI 120 Query: 285 EKAVTDVAELNGELRNRQY-LVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVI 343 K V N + +RQ + +L + + Y SP PV KD P +++I+ Sbjct: 121 AKNTPVVYPANYYITDRQLFKLNKLASQLELVEDVKTYYYLSSPDYPVVKDNPKRSLILA 180 Query: 344 LSALIGGMVACGGVLLRYAMASRKQDA 370 + +IG ++ +LL + + K+ + Sbjct: 181 IGFIIGILLPTFFILLGSVIQTNKKQS 207 >UniRef50_Q8KNB4 Wzz n=2 Tax=Pseudomonas aeruginosa RepID=Q8KNB4_PSEAE Length = 345 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 56/357 (15%), Positives = 122/357 (34%), Gaps = 22/357 (6%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQ-- 80 ++ E+DL+ L+ LW K ++ +++ + V PP + Sbjct: 3 ADGEVDLVKLVKELWVNKVLILLTTLLALIGSFTYAYLSKPVYEYRVAVVPPALGSIEGF 62 Query: 81 ELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELD 140 + + L + + +F + S +E+ + Q+ E E + Sbjct: 63 NIGRRENGLDAYTV------RSIYAIFSRNLLSDENKKEFFYK--IYLPQVGEGAESEDE 114 Query: 141 LHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVV 200 S+++K N +T+ E T ++ + V Sbjct: 115 QEEFYKKFSKEVKIDPANKPDA-------DRYTVIVEGTKREVLATWAQAFVRLAADRAV 167 Query: 201 KESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNG 260 E +++ +++ + ++ + K + D I RL +L IA + I P G Sbjct: 168 HEVIDSAGRDFQVRNAAMQSRITVLQNMAKGRRDDRIARLKEALLIAESLKIDGPPLIEG 227 Query: 261 QAVKD-----DPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVND 315 + + D D GA + ++ ++ + A ELR Q + + V+ Sbjct: 228 ASEQQLSSIMDGDLMYMRGAKALRAEINNLESRSVDAPFIPELRTLQEKLSWNSSLSVDS 287 Query: 316 VNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMM 372 +K S + P K +IV + L G ++ +L ++ + D + Sbjct: 288 DAVAVYKEDEGLSFSNQPIKPKKILIVTIGTLAGLIIGILLAVLAGFISKLRSDGSL 344 >UniRef50_A4C8G6 OtnB protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C8G6_9GAMM Length = 308 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 78/355 (21%), Positives = 136/355 (38%), Gaps = 59/355 (16%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ 78 +A+ N+EI+L LIS LW+ K ++ +V + + + LP + S ++T + Q Sbjct: 4 VANKLNDEIELTQLISALWQGKILIVGLVILCSACSVFYALSLPNIYKSTVLLTAADESQ 63 Query: 79 ---WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAK 135 +L F L + L +L E ++S ++ + Sbjct: 64 NSGMSKLNSQFGGLAAM---------AGVKLGSSGVDKSALALEIIKSHAFIAEF----- 109 Query: 136 IDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 195 ID+ +L I+A + + K + W P E Sbjct: 110 IDKNNLKPLIMAADNWDLGTNKVSYKPSVYNAESKVWVREAKIPRLPEP----------- 158 Query: 196 STLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLN--YSLDIANAAGIK 253 + E+ +F KE L+ + K N + +I ++ + DIA+ K Sbjct: 159 -------------SSQEVHEKFIKEHLSINSDKKSNLVSISIFHVSPYVAKDIAD----K 201 Query: 254 KPVYSNGQAVKDDPD---FSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTK 310 V N + KDD D SI+ + + AV D+ ++ EL +Q TK Sbjct: 202 LVVAINAKIKKDDIDEANKSIAYLTSAL-----GQTAVADMQKIFYELIEQQEQ----TK 252 Query: 311 AHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 N + FK + KD P +AII I +++G ++ CG VL+RY + Sbjct: 253 MLANARDQYVFKVIDPAVVAELKDSPKRAIICIFGSVLGFLLGCGFVLIRYFLKK 307 >UniRef50_Q1ID96 O-antigen chain length regulator protein (Wzz) n=1 Tax=Pseudomonas entomophila L48 RepID=Q1ID96_PSEE4 Length = 346 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 53/314 (16%), Positives = 121/314 (38%), Gaps = 14/314 (4%) Query: 26 EIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKS 85 EID + L+ VL++ V+ V GL+ F +P ++ + PP +L Sbjct: 13 EIDFIELLVVLFKEWLLVVKVASLVFALGLVYVFYVPSRYEAKLFTIPPTQNDIAQLN-- 70 Query: 86 FTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAI 145 + + +L + I + ++ +++ S S+ E+ + L E + L Sbjct: 71 YGRGGSAELPL-ISVGDVYSSYVRNLNSESMRMEFF--NDVYFPSLAEKQKTSLR----- 122 Query: 146 VALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLE 205 S+ + S + + ++ ++ + EEA + Y +E L+ Sbjct: 123 ---SDLYRQFFAALSILQGGKDQSDRYLITASSSSPEEAAKWVKQYTQMAGDRAKREVLK 179 Query: 206 NVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKD 265 N+ + +K ++++ +++ + + D I RL +L IA + G+ KP + + Sbjct: 180 NIYSDALVKADNLEKQIRREQESARRERDDRIARLTEALVIARSVGLVKPPIISAELTAQ 239 Query: 266 -DPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQ 324 + + G+D +E ++ K + LR R+ V ++ ++ Sbjct: 240 MNGSLTYMRGSDALEAEIANLKKRSSDDPFISNLRQREAEVSFYRSLRIDPALIEVYQQD 299 Query: 325 LSPSLPVKKDGPGK 338 +P + P Sbjct: 300 GDLIVPDRPVSPKS 313 >UniRef50_D0YWK9 O-antigen chain length determinant protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YWK9_LISDA Length = 352 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 67/352 (19%), Positives = 144/352 (40%), Gaps = 18/352 (5%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQEL 82 +N+++LLN+ VLW K ++ L++S Q W S+A +T P+ + Sbjct: 10 QDNQLNLLNIFRVLWTRKLIIIISTIIGIVLALIVSIYSAQWWESSAEITKPQYSDYAVF 69 Query: 83 EKSFTKLR-----VLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQL-KEAKI 136 S +L L I+ + +N FI S + ++L+ S + ++ Sbjct: 70 ISSADQLTTGSNPSESLKSIINIEKNYNSFINILTSKTNKIDFLQQSNIIKSYFIRDGVK 129 Query: 137 DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 196 ++ +A+ +EK+ KK+ +S+ + A T +++ +L+ YI + Sbjct: 130 TDIQKDKALDLWAEKII------VKKESLILNKSSYIVIAQANTLDDSFKLLNNYIKFTK 183 Query: 197 TLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPV 256 + L ++ I+ K++L + T + Q+ +L+IA +GI+ P+ Sbjct: 184 NKYNSDVLLSLETFKRIELLNLKKQLDYNISYTLDIKKLKEQKAQLALNIAEESGIESPL 243 Query: 257 YSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDV 316 + F+I+LGA + + + ++ D+A N ++ + L ++++ Sbjct: 244 ---NNYFEKGSSFNIALGAKALRAEKNVISSLKDLAIFNDKITLLSSQLNYLNNVKLSNL 300 Query: 317 NFTP-FKYQLSPSLPVKKDGP-GKAIIVILSALIGGMVACGGVLLRYAMASR 366 F Y + K P K I++ S L + L+ + + Sbjct: 301 ENNAFFSYIQTEHKNPNKIAPSKKTFILVFSLLFACI-GIVIALVIEIFSKK 351 >UniRef50_Q1N5G1 Lipopolysaccharide biosynthesis n=1 Tax=Bermanella marisrubri RepID=Q1N5G1_9GAMM Length = 388 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 63/363 (17%), Positives = 133/363 (36%), Gaps = 26/363 (7%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE 83 ++EIDL +L + K V+A + L + + + V+ PP V EL Sbjct: 17 SDEIDLFDLWDDVVENKVWVLAGLLGCIILAALYLLRATEIFETQVVIKPPSDVHVLELN 76 Query: 84 -----------KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLK 132 K + ++ + +A+ K S + + + V+++ Sbjct: 77 PPQLSATKLSSKGEAVIYEDEI-FGLTAEQAYQEAQKAVLSKEYRKAFFKDHIPVIEEFG 135 Query: 133 EAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYI 192 D+L +++ NA K ++ + LSF P S+E+ +L+ ++ Sbjct: 136 TVYSDKLLMNQNFANFDRLFSFSVSNAKKDTEQFT-----KLSFEFPDSQESAELLNAFV 190 Query: 193 DYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGI 252 Y ++E + K++ + + ++ + + + K + + + LN + IA GI Sbjct: 191 VYALVKKLEEIKTTLSGKVQAEILNLQYQVDKLKEEYKGERNRTLLLLNEAKHIAEKVGI 250 Query: 253 KKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAE--------LNGELRNRQYL 304 KP + Q + ++P G+ + ++ K +A+ + Y Sbjct: 251 NKPAFDKNQVLTEEPPL-YMYGSKALNAEIGAIKNRDSMAKDLSFGEEYFIEGVSQLLYR 309 Query: 305 VEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMA 364 ++QL K V+ P P K +I+ L+ + G L+ A Sbjct: 310 IDQLKKLEVDYSKVKLALIDEEAIPPTSPIKPKKLLILALAGVAGLFGGIMLALIMAAFK 369 Query: 365 SRK 367 K Sbjct: 370 RHK 372 >UniRef50_C3KAZ7 Putative chain length determinant protein n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3KAZ7_PSEFS Length = 438 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 63/430 (14%), Positives = 135/430 (31%), Gaps = 94/430 (21%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQW 79 +EIDL L +W+ KK ++ G+ +F+ P+ + ++V+ P + Sbjct: 9 QYLPTDEIDLFELFHAIWKQKKLIIGCTILAGLLGVGYAFLAPRVYQVSSVLRPAAINEL 68 Query: 80 QEL-EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 L KL D K+ + S + R++ + + + Sbjct: 69 DALNRSEVYKLPPADALAKVGA---------QLDSYETRLGFFRAN---LPLFEAFQQPG 116 Query: 139 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 198 L ++ A ++ + KK +L L P + +L+G + Y T Sbjct: 117 RSLEQSFEAFNQNAINLVGADPKK--PDALNNYLRLEMQYPNGIDGVAILNGLVAYAITQ 174 Query: 199 VVKES-----------LENVRNKLE----------------------IKTQFEKEKLAQD 225 ++ L ++ K++ +K K++L+ Sbjct: 175 QREQVGADLKVIVNNRLNELKGKIDAARANYETGKASKIARLLEADKVKRAQLKDELSAL 234 Query: 226 RIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQ--------------AVKDDPDFSI 271 R++ K Q + + L ++ IA + GI P + V + Sbjct: 235 RLQMKMQRVSRLAELAEAISIAKSIGINSPTTPSAMGASAVRGAGQVMRTEVTNQKIPLY 294 Query: 272 SLGADGIER--------------------------------KLEIEKAVTDVAELNGELR 299 +G + +E ++E+ + D + Sbjct: 295 FMGTEALEAERTALAQRSNDDFTNNRVAEISKELRMLDVNREVEVLNSRKDEDIFLQGVE 354 Query: 300 NRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLL 359 +L ++ P+ P KA+I+ LS + G M+ L+ Sbjct: 355 PLWAEEARLRGLSIDMSALKLVTVDRQAQEPLGPIKPKKALIIALSLMAGLMLGVLVALI 414 Query: 360 RYAMASRKQD 369 R+ R+++ Sbjct: 415 RHFAQVRREN 424 >UniRef50_A4Y8H9 Lipopolysaccharide biosynthesis n=30 Tax=Gammaproteobacteria RepID=A4Y8H9_SHEPC Length = 329 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 63/369 (17%), Positives = 131/369 (35%), Gaps = 51/369 (13%) Query: 3 SLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILP 62 + I Q + + D ++EIDL L SV+W+ K ++A+ FA ++ + P Sbjct: 2 NTQITQNPNTYQSDARFPQVQDDEIDLRELFSVIWQGKWLIIAITAIFAVGAVIFAIKQP 61 Query: 63 QKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLR 122 + S A++ P Q L ++ L ++ L E L+ Sbjct: 62 NIYKSEALLAPVSEEQGGGLSALASQFGGLASLAGVNLGG-----KNGTDKTQLAIEVLK 116 Query: 123 SSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS----WTLSFTA 178 S + + +++ I+A + D +A K P+LY W A Sbjct: 117 SRQFTSEFIQKHN---------ILADLMAAEKWDADADKIIYAPALYNEQTNTWVREVKA 167 Query: 179 PTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQ 238 P E ++ + + ++ + +K + +++ Sbjct: 168 PIKPEP-------------------------SMQEAYKVFNKIISVNSVKETGMVTLSVE 202 Query: 239 RLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGEL 298 L+ I + + + +KD + ++ + +++ V D+ + +L Sbjct: 203 HLS---PIVAQQWVTWLIQDINKVMKDRDVAEANRSSEFLNKQI-ALTNVADIRTILYKL 258 Query: 299 RNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVL 358 Q T + FK P +K P +A+I +L ++GGM+ VL Sbjct: 259 VEEQAK----TIMFAEVRDEYVFKTIDPALAPEEKAKPKRALICVLGTILGGMLGVMLVL 314 Query: 359 LRYAMASRK 367 +R+ M + Sbjct: 315 VRHFMRKEQ 323 >UniRef50_Q1QWX5 Lipopolysaccharide biosynthesis n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QWX5_CHRSD Length = 365 Score = 114 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 64/381 (16%), Positives = 131/381 (34%), Gaps = 52/381 (13%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQW 79 A ++EIDL L++ L ++ V A + ++ ++ TP + Sbjct: 6 ARHDDDEIDLSQLLNHLIDGWYWIVGCVVAALVLAGAYLAMTTPQYETSFRATPAASSNF 65 Query: 80 QELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDEL 139 + + +A+ + S +EY+RS + A + L Sbjct: 66 AGMNLLSG--------FSVSPQDAYTTLGNRLSSFQNFQEYVRSHREAFVIPEGASLGSL 117 Query: 140 DLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLV 199 +R + + E + + +L++ P E +L+GY++ + V Sbjct: 118 FTNRL-------------DITGLTSEVNGASELSLTYRYPEGESGHRILNGYVNATAEQV 164 Query: 200 VKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSN 259 E + K +L K + + + L+ ++ A A GI+ P Sbjct: 165 WSELKNRFARANQAKIAALNTRLQVGEDKLLAEREHRLFALDNAISTARALGIEAPTTPQ 224 Query: 260 --GQ----------AVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQ 307 GQ ++ D +G +E + E K NG LRN + +EQ Sbjct: 225 EFGQLNPNKEVIYTSLSGDGLPLYFMGYKTLEAERETLKGKLHDGLSNGTLRNIREELEQ 284 Query: 308 LTKA--HVNDVNFTPF----------KYQLSPSLPVKKD---GPGKAIIVILSALIGGMV 352 + + + +F P + +D P A+++ L+ ++GGM+ Sbjct: 285 RHQIADMLKNDSFYPLEEGVSEHPDERVVSVIERAYPQDAPVKPRSALVLALAVILGGML 344 Query: 353 ACGGVLLR----YAMASRKQD 369 V ++ + R+Q Sbjct: 345 GVFLVFMKAGLGAVLRQRRQA 365 >UniRef50_Q5R093 Chain length determinant protein n=1 Tax=Idiomarina loihiensis RepID=Q5R093_IDILO Length = 336 Score = 112 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 61/366 (16%), Positives = 129/366 (35%), Gaps = 53/366 (14%) Query: 9 GSDAHFPDYPL-ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTS 67 G + P+Y P ++EIDL L ++W K ++A+ F FA ++ S LP + + Sbjct: 18 GPGQYPPNYYNGPYPQDDEIDLRELFGIIWDGKWIIIAITFVFAVGSVIYSLSLPNIYKA 77 Query: 68 AAVVTPPEPV---QWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSS 124 A + P E L + + K V++ E L+S Sbjct: 78 EATLAPTEEAQGQGLGGELGGLANLAGISVGSG------------KVDKVTMAMEILQSR 125 Query: 125 PYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEA 184 ++ + +++ I I+A+ E ++ + ++ W + Sbjct: 126 QFIKNFVQKHNILPE-----IMAVKEWNESSGELVFNEEVYNPNANKWVRKTESSKQPAP 180 Query: 185 QTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSL 244 + + Y++ ++ E E + + + + IQ +N Sbjct: 181 TSWV--YVNVFKNGLLVEKDEETPGLVNLSVSHRSPII------AHRWAEWLIQDIN--- 229 Query: 245 DIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYL 304 D IK+ S + ++ +L E ++ + ++ +L +Q Sbjct: 230 DHMRQRDIKEAQSSM----------------EYLQNEL-GETNLSSMQQVFYQLIEKQIQ 272 Query: 305 VEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMA 364 L F+ +P +K P +A+I I+ +GG ++ V +R+ + Sbjct: 273 TIMLANVRPE----YVFQVLDPAVVPEQKSAPSRALICIVGTFLGGFLSLLVVFIRHLIR 328 Query: 365 SRKQDA 370 S K A Sbjct: 329 SSKSKA 334 >UniRef50_B0KTY6 Lipopolysaccharide biosynthesis protein n=1 Tax=Pseudomonas putida GB-1 RepID=B0KTY6_PSEPG Length = 347 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 50/352 (14%), Positives = 122/352 (34%), Gaps = 17/352 (4%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQW 79 E+DL L +W K + + A L +F + + + P Sbjct: 5 QYRGGEEVDLGELFKSVWAQKVLIAGLTLALLLLAALYAFTRQPVYQADLAIVAPSHNDI 64 Query: 80 QELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDEL 139 + + L + I + + L+ + S + + + + + Sbjct: 65 SLINYGRGEATGLAV---ITVKDVYELYARHLYSENARRKVFEEIFFPSLSESQKAQPQN 121 Query: 140 DLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLV 199 L L K DD A++ + +S + A + + + + Sbjct: 122 VLFTRFSRLFVISKTGDDAAAR----------YVVSVSDSEPAAAVKLADALANTAAEMT 171 Query: 200 VKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSN 259 E ++N + ++ ++++ R + + + + +L +L IA + G++KP Sbjct: 172 KSELVKNALSDASMRAVMLDKEISGKREVARKEREDRLIKLKEALSIALSVGLRKPPIIT 231 Query: 260 GQAVKD----DPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVND 315 G A + D D + G++ I ++ LR + + +N+ Sbjct: 232 GSASELSARMDGDLAYMRGSEAIRAEINNMAMRQSDDPYIANLRQLEERMAFYRDLKINE 291 Query: 316 VNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRK 367 F ++ ++P + P K +I++ ++G + L+R+ + +K Sbjct: 292 DAFRVYQRDGVLAVPDQPIKPRKVLIMLGGLVLGAGLGVFVALIRFFVRGKK 343 >UniRef50_C9P0B3 Lipopolysaccharide biosynthesis n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9P0B3_9VIBR Length = 320 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 63/365 (17%), Positives = 124/365 (33%), Gaps = 47/365 (12%) Query: 4 LNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQ 63 +N + +F S N+EIDL + LW K V+ F G+ + P Sbjct: 1 MNKPVIHERNFTQVQDLSIVNDEIDLRGVFLALWSGKWVVIVTAVLFTIGGVWFALSQPN 60 Query: 64 KWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRS 123 + ++A + + L ++ L I+ + +++ Sbjct: 61 TYRASATLVSANDEKSGGLAAMASQFGGLASLAGINVGGGRTDDKSVSLATLESRKFI-- 118 Query: 124 SPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEE 183 A ID+ L ++A + D +K P Y E+ Sbjct: 119 ---------NAFIDKYALLPILMA----TEYWDKENNKLVLNPEFYDGIRW---LNDPED 162 Query: 184 AQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLN-Y 242 + L ++ + + L + + ++ +I L+ Y Sbjct: 163 PEKSL--------EPTAWQAYKKFKGVLNVSEATDTGIVS-----------VSITHLSPY 203 Query: 243 SLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQ 302 +K+ + + + +I + +E++L+ K V D+ + +L Q Sbjct: 204 VAQQWTQWLVKELNLWMKEESLTETNRNI----EYLEQQLDRTK-VVDMQNVFYQLIEEQ 258 Query: 303 YLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYA 362 L + + FK P +P +K GP +A+I IL+ L GG++ VL+RYA Sbjct: 259 TKTLMLAEVK----DEYAFKVIDPPVVPEEKVGPKRALICILATLFGGILGVAIVLIRYA 314 Query: 363 MASRK 367 Sbjct: 315 FRREN 319 >UniRef50_UPI000197C816 regulator of length of O-antigen component of lipopolysaccharide chains n=2 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197C816 Length = 332 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 58/330 (17%), Positives = 120/330 (36%), Gaps = 48/330 (14%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE 83 +EIDL +L + LW KKT++ + F G + KWTS A+++ PE Q Sbjct: 10 QDEIDLFHLANQLWVNKKTIIIFIIVFIFMGCVYLVFAKPKWTSQALISLPEIGQLSNYP 69 Query: 84 KSFTKLRVLDLDIKID-----RTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 + + L + D T+ FNLF+ + + ++ Sbjct: 70 TAVS-LSLNSADNMGTYDMSLPTKVFNLFLANVDADIVKDK------------------- 109 Query: 139 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 198 N +P + LS +A ++ AQ L+ ++++++ Sbjct: 110 ------------------SNTPLSISKPKDANYYILSLSASNAKLAQLELTEWLNFLNKK 151 Query: 199 VVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIK-KPVY 257 + + LE + +++ K++ + L +L IA + + Sbjct: 152 TQSRLYQAIWQSLEQRKSQLLQQIKAFETSAKDKKQQRLTLLESALKIAQDTQLNVNEIK 211 Query: 258 SNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVN 317 + DD F +GA + ++ EK + + Q + ++ + + Sbjct: 212 QLPNIIPDDALF--MMGAPALNALIQQEKEWP--LTFDPRYFDTQVQLSLISSFQLKEQG 267 Query: 318 FTPFKYQLSPSLPVKKDGPGKAIIVILSAL 347 F PSL + ++ P +I++LS + Sbjct: 268 FDAINIISPPSLALHRESPKVTLILVLSIM 297 >UniRef50_A3JJA1 Lipopolysaccharide biosynthesis n=1 Tax=Marinobacter sp. ELB17 RepID=A3JJA1_9ALTE Length = 378 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 63/378 (16%), Positives = 151/378 (39%), Gaps = 44/378 (11%) Query: 22 PSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQE 81 P ++EIDL + +W + V+ +V + ++ + P+ + + ++ + + Sbjct: 7 PYDDEIDLFEIFETVWDGRWRVIGIVILAVLISIAVNVLKPELYNGSTALSKAPSSSFIK 66 Query: 82 LEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDL 141 L+ I F++F+ +F + + L S Y+ +L+ +I D Sbjct: 67 YSSVNETLQQSGFSYAISSQSVFDMFVTEFADYDEVVKILEKSDYIKQRLQAIEI--EDR 124 Query: 142 HRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVK 201 + +V +++ + + W+L + S E++ + + I+ + V + Sbjct: 125 NDFLVYMAKNFEIL--------PPSENGNHWSLDYEWRDSNESKKIFTQSIEDVLANVRQ 176 Query: 202 ESL---ENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQR----LNYSLDIANAAGIKK 254 L + + + I+ + +K++L D + ++ ++ ++ + LN IA G++K Sbjct: 177 TILSDIDELARTVSIRNKNKKQRLNADLVALEDAINLDLAKRLLYLNEQTAIAKELGVEK 236 Query: 255 PVYSNGQAVKDD----------PDFSISL-GADGIERKLEIE--KAVTDVAELNGELRNR 301 + + D L G I++++++ ++ D +N + Sbjct: 237 NSLNGNGLFQSQNTGVSLSVTSSDIPFYLRGFKAIDKEIDLLFSRSKEDRLAINNTYVSI 296 Query: 302 QYLVEQL-----------TKAHVNDVNFTPF-KYQLSPSLPVKKDGPGKAIIVILSALIG 349 + + + K V D + T + Y LS + + P + IL+A++G Sbjct: 297 KTQLSSIHNDVSMQQIMSAKGSVADDDVTSWLAYDLSLATTSSQSKP--VLYAILAAMLG 354 Query: 350 GMVACGGVLLRYAMASRK 367 MV VL+ A+ RK Sbjct: 355 LMVGVFNVLVSSAVRKRK 372 >UniRef50_C7RAP5 Lipopolysaccharide biosynthesis protein n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RAP5_KANKD Length = 328 Score = 101 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 63/379 (16%), Positives = 129/379 (34%), Gaps = 66/379 (17%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 M+ N +Q P + EIDL L S++W+ K ++A+ FA + ++ Sbjct: 1 MNQDNNQQNIPTQGYYPPQSRYQEEEIDLRELFSIIWQGKWLIIAITIFFAIGSVALALW 60 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTK------LRVLDLDIKIDRTEAFNLFIKKFQSV 114 LP ++ + A+V P + + +L + L ++L I+ S Sbjct: 61 LPNEYKATAIVQPNDSGRGGKLASLSGQFGGLASLAGVNLGAAESTDAVIA--IEIMNSW 118 Query: 115 SLLEEYLRSS----PYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYT 170 E+++ P + E D+L L I K + S Sbjct: 119 GFAEQFIDKHELDVPLFAAEGWEESTDQLQLDEDIYDPQRNEWVRQAPKGKTVEPTSWEL 178 Query: 171 SWTLSFTAPTSEEAQT-VLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKT 229 L S++A+ +++ + + S + K+ + + + + Sbjct: 179 YEQLRKRLLISQDAEKGLVNISVTHYSPRIAKQWTDWLVQDINEHMK------------- 225 Query: 230 KNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVT 289 +L AN + +E ++ + +V Sbjct: 226 -----------ERALKEANES------------------------IKYLEEQIN-QTSVA 249 Query: 290 DVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIG 349 ++ + EL Q+ + L + + FK P +KD P +A+I I+ L+G Sbjct: 250 EIRAVFSELIQEQHKTKMLAQV----SDEYVFKTVSEAKAPEEKDKPKRALICIIGTLLG 305 Query: 350 GMVACGGVLLRYAMASRKQ 368 G ++ VL+ K+ Sbjct: 306 GFLSLFIVLMSGLYKREKR 324 >UniRef50_C6MYW2 Putative Wzz n=1 Tax=Legionella drancourtii LLAP12 RepID=C6MYW2_9GAMM Length = 344 Score = 101 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 41/327 (12%), Positives = 107/327 (32%), Gaps = 25/327 (7%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQEL 82 SN EI L+ L + ++ K+ ++ G + F + +A VT Sbjct: 6 SNTEISLIELFHLFYQKKRVLVLTTLLGLALGFAVVFFSKPVYEAAIKVTAASEGDIAAF 65 Query: 83 EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLH 142 + + + + +F + S + + + + + L + ++ Sbjct: 66 N--LGRSWNKSALKPMSAADIYLIFNNELLSETAKKAFFNQ--FYLSSLSLQQKEKYSSA 121 Query: 143 RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKE 202 + + ++ K ++ +T++ ++ L ++ + + + Sbjct: 122 HLYASFIKNFAIIEHP----KGVSEAFSKFTIAIRGDNPQQVTIWLKQFLHVVQAQTLTK 177 Query: 203 SLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQA 262 L N++ + + ++++ + R K + I +L ++ IA A Sbjct: 178 ILNNIKQQNSVLVYNLQQQIDRARETAKVERHDRITQLKETMRIAQLA-----------R 226 Query: 263 VKDDPDFSISLGADG------IERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDV 316 +D F +L + +++ A +LR Q ++ VN Sbjct: 227 QNEDDLFDSALNTKYPPNPALLRAEIKNLSARKSDDAFIPKLRTLQAELDFYKSLAVNRN 286 Query: 317 NFTPFKYQLSPSLPVKKDGPGKAIIVI 343 F + P P K +I++ Sbjct: 287 QVAVFHLDGAIETPNTPISPKKRLIMM 313 >UniRef50_D0Z7Z5 Chain length determinant protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0Z7Z5_EDWTE Length = 317 Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 69/350 (19%), Positives = 134/350 (38%), Gaps = 37/350 (10%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ 78 + N+EIDLL++I LW+ K V V F L + KWT+ + ++ P Sbjct: 5 PVNHVNDEIDLLDIIRQLWQGKVIVFCVSIMFLAIAGLYIMLTTPKWTAESTLSKP---- 60 Query: 79 WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 +L + + + N + +AKI Sbjct: 61 ------YLNQLANYPAGVMLSQVWTMNDGDNA------------------PVIDDAKITG 96 Query: 139 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 198 + I + ++ + D + + + +S TA A+ L + +S Sbjct: 97 NVFNTFIAMANAQILSGMDISIRPGTTAET---FIVSSTANDPALAKKNLQSALISLSDD 153 Query: 199 VVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYS 258 K+ + + L + K ++ + Q D I L +L +AN I++ + Sbjct: 154 ARKQLDALMYSSLRERANSLKIQMQAQENSARAQRDYRISVLKNALQLANQMNIQQTKLN 213 Query: 259 NGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNF 318 D D LG + +E EK + + N + Q + + + + + N Sbjct: 214 PASGEISD-DMLFMLGVPILNTMIEHEKNLP--LKFNASYFDMQEMFDSINGFKLTEDNL 270 Query: 319 TPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQ 368 + F + ++ V K G +A+I++LS L+G +++CG +LLR A+ S + Sbjct: 271 SIFN---ATNISVDKVGQKRALILVLSLLLGVILSCGYILLRNALRSANK 317 >UniRef50_A5UI14 Putative uncharacterized protein n=2 Tax=Haemophilus influenzae RepID=A5UI14_HAEIG Length = 167 Score = 97.2 bits (240), Expect = 9e-19, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 75/203 (36%), Gaps = 39/203 (19%) Query: 169 YTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIK 228 + ++F+A T + AQ+VL+ Y+++++ + ++ + + ++ + Q Sbjct: 3 KIALKITFSAETPKYAQSVLTEYVNFVNQYSLNQTNQEFKQGFNLRLDELRFSKEQIEEN 62 Query: 229 TKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAV 288 ++ L +LDIA K Sbjct: 63 LTEAKKVQVENLTNALDIA--------------------------------------KNT 84 Query: 289 TDVAELNGELRNRQY-LVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSAL 347 V N + +RQ + +L + + Y SP P+ KD +A+I+ + + Sbjct: 85 PVVYPANYYITDRQLFKLNKLASQLELVEDVKTYYYLSSPDYPMVKDNSKRALILAIGFI 144 Query: 348 IGGMVACGGVLLRYAMASRKQDA 370 IG ++ +LL + + K+ + Sbjct: 145 IGILLPTFFILLGSVIQTNKKQS 167 >UniRef50_UPI0001C34705 lipopolysaccharide biosynthesis protein n=3 Tax=Providencia rettgeri DSM 1131 RepID=UPI0001C34705 Length = 318 Score = 95.6 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 51/329 (15%), Positives = 112/329 (34%), Gaps = 50/329 (15%) Query: 36 LWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLD-- 93 LW K T+ + G + +WTS ++ PE Q ++ L + + Sbjct: 19 LWVHKNTIFIITAFSMMIGCFYLALAKPQWTSVVFISSPELGQLSNYPEAV-DLSLREQT 77 Query: 94 -LDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKM 152 D T+ FNLF+ + E+ Sbjct: 78 WADKADLSTKVFNLFLANIDAYIEREK--------------------------------- 104 Query: 153 KAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLE 212 N+ +P + L+F++ ++ AQ+ L+ + +++ + +++ LE Sbjct: 105 ----PNSPVAIFKPEVGNYRVLTFSSTNAKLAQSELTELVAFLNQQTQQNLYQSIHQSLE 160 Query: 213 IKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSIS 272 ++ + +L TK Q +I + + G + + + D+P + Sbjct: 161 LRKHSLQRRLNALEASTKEQEQLHIALWERAKNQRLKGG---EIKQLPENISDEPLLMME 217 Query: 273 LGA-DGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPV 331 + + L+ + + + + + L+ +++ F PSL Sbjct: 218 VAVFTALFELLQDTR-----LPFDADYFETKTALSLLSSFKLSESRFQAVNIISPPSLAK 272 Query: 332 KKDGPGKAIIVILSALIGGMVACGGVLLR 360 +D P ++ LS L G +V V +R Sbjct: 273 HRDSPRVPFVLGLSLLFGIVVGVTYVFIR 301 >UniRef50_Q1YPV1 OtnB protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YPV1_9GAMM Length = 312 Score = 94.9 bits (234), Expect = 5e-18, Method: Composition-based stats. Identities = 73/363 (20%), Positives = 141/363 (38%), Gaps = 66/363 (18%) Query: 15 PDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPP 74 P ++EIDL L SVLW KK ++AV FA ++ + L ++ ++AVV+P Sbjct: 3 NQIQTPQPYDDEIDLRELFSVLWAGKKLIVAVTAVFAVVSVIYALSLANQYKASAVVSPA 62 Query: 75 EP--VQWQELEKSFTKLRVLD-LDIKIDRTEAFNLFIKKFQSVSLLEEYLRSS----PYV 127 + L L ++I + ++ QS +E ++++ P Sbjct: 63 HSGGSSLGAMAGQLGGLASLAGINIGSGESNETQEAMEIMQSWGFIEAFIQTHALQVPVY 122 Query: 128 MDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPS---LYTSWTLSFTAPTSEEA 184 + + L L + + K ++D+AS + PS LY ++ S A + ++ Sbjct: 123 AATGWDKGSNSLKLDDDLYDAASKRWLIEDSASGENRAPSSWALYQNFK-SRVAVSQDKK 181 Query: 185 QTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSL 244 +++ ++Y S + K+ ++ + + R + Q++ NI+ L Sbjct: 182 SGLINVSVEYYSPQIAKQWVDLFISTIN----------DYMRARKLEQVNRNIEYLT--- 228 Query: 245 DIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEK-AVTDVAELNGELRNRQY 303 ++IEK A+ D+ E+ +L Q Sbjct: 229 -------------------------------------VQIEKTAIADMREVFYQLIEEQT 251 Query: 304 LVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAM 363 + L +A F +P +K P +A + IL L+GGM++ VL+R Sbjct: 252 KSKMLAEASPE----YAFVTVSRAMVPEQKSQPKRARVCILGTLLGGMLSVLWVLVRRYA 307 Query: 364 ASR 366 S+ Sbjct: 308 FSK 310 >UniRef50_A4BIX4 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BIX4_9GAMM Length = 360 Score = 93.7 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 61/365 (16%), Positives = 137/365 (37%), Gaps = 32/365 (8%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ 78 L N+EIDL LI L ++ + F A G++++ +LP+++ AV P Sbjct: 10 LRPHDNDEIDLGQLIKQLIAQWPLIVGITFLGAVVGVVVALMLPKQYRVEAVFDKPSTTH 69 Query: 79 WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 L + + R + F+K ++ +L+E L S ++D + K Sbjct: 70 LSSLISQPF--------VDLSRQQLLEDFLKNLKTPNLIESVLDSHGLMVD--NDGKALS 119 Query: 139 LDLHRAIVALSEKMKAVDDNASK----KKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDY 194 + ++V + V +DE ++S + AQT+++G ++ Sbjct: 120 AEKRYSLVLRMSQALRVAPVEYDFIQTLQDETPTIDQISVSLLSSEPAIAQTLINGLLEA 179 Query: 195 ISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKK 254 S + ++L ++ +I + L Q + Q ++ RL +LD+A I + Sbjct: 180 ASAKTLADTLSDIEGAKQIALSQLQADLNQLKEAALAQKQEHLLRLRSALDVAQELNITE 239 Query: 255 PVYSNGQAVKDDPDFSISLGADGIERKLEIEKA-VTDVAELNGELRN-----------RQ 302 P + G + +++ ++ +++ + Q Sbjct: 240 PTDWEASQGE-----LYLKGTRILSAEIKSLESAQPNLSPIIVGYDEEGLAQTISPESIQ 294 Query: 303 YLVEQLTKAHVNDVNFTPF-KYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRY 361 + L+ V F +++ ++P + P + +I + + ++ G L+R Sbjct: 295 GRLGALSDYEVPSTEALQFVGSEVAANIPANAEKPNRKLIAVAATVLAGFFGLFTALIRI 354 Query: 362 AMASR 366 A+ Sbjct: 355 AIRRE 359 >UniRef50_C7M6P7 Lipopolysaccharide biosynthesis protein n=2 Tax=Capnocytophaga RepID=C7M6P7_CAPOD Length = 355 Score = 88.7 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 60/368 (16%), Positives = 137/368 (37%), Gaps = 30/368 (8%) Query: 15 PDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPP 74 ++ +EIDLL LI+ LWRAKK++ F G+L++ +++T+ ++ P Sbjct: 3 NNHHNTIREEDEIDLLQLINKLWRAKKSITVFTLIFMVIGILVALFSAKEYTATTIMV-P 61 Query: 75 EPVQWQELEKS--FTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLK 132 + + + ++L + K +SV ++ ++ D Sbjct: 62 QATDSKSTGGLGGLAAMAGINLGGNNADAIPLTTYSKIIESVPFKKKLAQTKLTFSDISN 121 Query: 133 EAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTV----- 187 ++ + A ++ + ++ + EPS+ T T+ + EE + Sbjct: 122 PITYEQYCKNYAKPSILGSVMSIFRSNP---SEPSIKVQDTTHITSISKEERAILNSIDN 178 Query: 188 -----LSGYIDYIS-TLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLN 241 L+ YI+ + + E+L + + ++ K K + D QR Sbjct: 179 NIKLNLNEKEGYITLSYAMPEALPAAQMLQSAQQLLQETVTEFKLQKAKEEFDFVQQRFI 238 Query: 242 YSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNR 301 + A K+ + Q D L ++ + +L+ +A ++A + Sbjct: 239 EAEKDFKA---KQYAVAGFQDRNRD------LFSNLPQTRLQQLQAEYNLAFNVYTELAK 289 Query: 302 QYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRY 361 Q +++ + F S+P ++ P + +I+ + +G ++ G V L+ Sbjct: 290 QLETKRIKMKE----DQPIFTIIEPVSVPNERSKPKRMMIIAIWTFVGLIIGIGNVFLKD 345 Query: 362 AMASRKQD 369 K + Sbjct: 346 FRQQLKSN 353 >UniRef50_B8KUX8 Chain length determinant protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KUX8_9GAMM Length = 351 Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 62/362 (17%), Positives = 120/362 (33%), Gaps = 48/362 (13%) Query: 15 PDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLIS-FILPQKWTSAAVVTP 73 P Y + ++EIDL LI+ LWR + ++A+ AF A I + A + P Sbjct: 31 PSYQWSDARDDEIDLFELIAGLWRRRFLIVALTAAFVIAAAGYVTLIATPTFVVEARIRP 90 Query: 74 PEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSV-SLLEEY---LRSSPYVMD 129 L K+ + + A F +FQS L + + S+P + Sbjct: 91 ATEQALIGLNKARS--------FSVGPAAALAQFSAEFQSRSVLQSAFDAVMSSNPGTVA 142 Query: 130 QLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLS 189 E L + + +++ +E + LSF A +E + L Sbjct: 143 WTGEEMPPSLTREQLFLEGFLPRINIEEETVPSGNE----SIRLLSFEAQNAEAGRDTLD 198 Query: 190 GYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANA 249 I + L++ K +L + + + + IA Sbjct: 199 AIIQRAKAAATTAITNSFTANLDLNISQRKRELERILAQIADGRTDMTR-------IATE 251 Query: 250 AGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLT 309 + + G AV D + ++ +L+ +E L Sbjct: 252 --VAQSETGQGIAVADS--------------------SGVRYTSVSAQLQAEIAQLEVLQ 289 Query: 310 KAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQD 369 K ++++ + P P + P K +IV + + G + + L+ A +R+ Sbjct: 290 KIPLDNL--QVIRIDQPPIAPTRPVKPKKTLIVAAAGVAGALFSLLVALVLNARDARRAS 347 Query: 370 AM 371 A+ Sbjct: 348 AI 349 >UniRef50_A3N2K1 Putative uncharacterized protein n=3 Tax=Actinobacillus pleuropneumoniae RepID=A3N2K1_ACTP2 Length = 292 Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 55/361 (15%), Positives = 104/361 (28%), Gaps = 97/361 (26%) Query: 35 VLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDL 94 +L R T++ G +S + Q W + A PP+ F+ L+ Sbjct: 1 MLLRYLFTLIISTAVGVAGGFGLSSLDTQTWKATAEFEPPKVSTLGNYYTLFSTYTFLNG 60 Query: 95 DIKIDRTEA-------------------------FNLFIKKFQSVSLLEEYLRSSPYVMD 129 + +N F + S +L E+L + V Sbjct: 61 GDGVSYNVIADDKGSLSLAPEIGRKAEDSATLGSYNEFKRNLISTDVLVEFLTQTETVKL 120 Query: 130 QLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLS 189 + + L ++ + A+ K +LS + EEA +L+ Sbjct: 121 KAQ------LTHQPIVMTAQSLAEQFVFQAATKTQPFD-----SLSVRSANPEEAYKLLN 169 Query: 190 GYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANA 249 +I + + + + K K Q I +A Sbjct: 170 DFIAFANQQTKQTLNAELVAKW-------KNLFQQ---------------------IKSA 201 Query: 250 AGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLT 309 A IK G + KL + ++V + Sbjct: 202 ADIKLGAIQQGNQIA----------TQDWNGKLNLMRSVRPL------------------ 233 Query: 310 KAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQD 369 D T F++ +PS+P+ D P + +++ AL G ++ V + + D Sbjct: 234 -----DDQLTAFRFVKTPSVPLTPDTPNPTLWMMIGALAGLLLGMVIVSTMGLLRKKPAD 288 Query: 370 A 370 A Sbjct: 289 A 289 >UniRef50_D0WWA9 Putative uncharacterized protein n=3 Tax=Vibrio harveyi group RepID=D0WWA9_VIBAL Length = 300 Score = 82.9 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 68/345 (19%), Positives = 124/345 (35%), Gaps = 55/345 (15%) Query: 26 EIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKS 85 E+D+ LI LW+ K ++A+ F FA A +L + P + S AV+ P Sbjct: 7 ELDIGELIRSLWQQKIMIVAITFVFAVASVLFAMSKPNLYKSEAVLFPVADNTPSSAMGQ 66 Query: 86 FTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAI 145 L L +K ++ E LRS ++ ++ R I Sbjct: 67 LGGLAALA-----------GFGSQKSSKQAIALESLRSRAFLGAFIE---------RRNI 106 Query: 146 VALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLE 205 + ++ D + K +P +Y T ++T SE + Sbjct: 107 LIPLMAIEHWDATSGKVYIDPKIYDESTDTWTRVVSEG---------------------K 145 Query: 206 NVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAG---IKKPVYSNGQA 262 + + T+ E L D KT ++ N S D+A I Sbjct: 146 TPKPTILEATKVLNELLVIDSNKTSGSTIVSL--TNQSPDLAKQWLDWLISDLNEWMKNK 203 Query: 263 VKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFK 322 + +I + L + +V E + ++ ++ + + ++ D+ Sbjct: 204 DINQAKNNIQYLEKQLN--LTNLSEMQNVFYQLVEEQTKKLMLAEAQENYIFDI------ 255 Query: 323 YQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRK 367 P +P +KD P +AII +L LIGG++A L R A++ + Sbjct: 256 -IDPPVVPEEKDSPSRAIICVLGTLIGGVLAMVIALFRIALSRKH 299 >UniRef50_A7I0H6 Chain length determinant protein n=1 Tax=Campylobacter hominis ATCC BAA-381 RepID=A7I0H6_CAMHC Length = 370 Score = 81.4 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 52/345 (15%), Positives = 119/345 (34%), Gaps = 67/345 (19%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE 83 ++EIDL+ L + LW K ++ + F G+L + I + ++A+V E + E Sbjct: 9 DDEIDLVELFATLWNGKIKIIVITVVFLVVGILYTLIATPWYKASALV---EVGYYNTNE 65 Query: 84 KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHR 143 K +L+ I +I + V + Y++S + + K Sbjct: 66 NGVVKNVMLEEPKNIIEK-LKTRYIDLLKDVEGKDVYVKSVNEIKNNNK----------- 113 Query: 144 AIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKES 203 +++ ++E+A ++ I +S + Sbjct: 114 ---------------------------FFSIEVLGKSNEKAVKMIDEMIQSVSDE-HNKI 145 Query: 204 LENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAV 263 ++ + ++K ++++ + + + I + +L + A + Sbjct: 146 IDGYISSQKVKLANIEDQIKVLQNDKMGETENQINNVEQNLQMQKAGALN---------- 195 Query: 264 KDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKY 323 D + + K +TD+ ++ EL+N + + + + N+ Sbjct: 196 ------------DILSALQKELKELTDIQKI--ELKNTLLGQKSVIELTLEPFNYKNTSV 241 Query: 324 QLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQ 368 + P K II+ ++ L G MV VL M R++ Sbjct: 242 VSQIITSKHPEKPKKLIILAVALLAGAMVGVFWVLFADFMKKRRE 286 >UniRef50_A6ASH0 OtnB protein n=10 Tax=Vibrio RepID=A6ASH0_VIBHA Length = 336 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 54/380 (14%), Positives = 125/380 (32%), Gaps = 65/380 (17%) Query: 3 SLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILP 62 + + + + L+ N +D+ ++ ++ K + V AF + + P Sbjct: 4 NQDKHPQVASPSSRFELSDDLNQSVDIREILKAIYSGKLYITFVTIAFCILSVFFALSRP 63 Query: 63 QKWTSAAVVTPPEPVQWQELEKSFTKLRVLD----LDIKIDRTEAFNLFIKKFQSVSLLE 118 + + A+++P E L + + + +++ + L ++ QS +E Sbjct: 64 DIYQADALLSPAENSSSSGLSQMAGQFGGIAALAGVNLNAGESSQTELAVQVMQSRKFIE 123 Query: 119 EYLRSSPYVMDQLKEAKIDELDLHRAIVAL---SEKMKAVDDNASKKKDEPSLYTSWTLS 175 ++ ++ + D I A + + + D+ + +PS ++ + Sbjct: 124 SFINKHDLLIPIMAVNNWDIGSGSLNIDADIYNEDTKEWLRDSKGLRVAKPSTLEAYEI- 182 Query: 176 FTAPTSEEAQTVLSGY----IDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKN 231 F + AQ SG ++Y S V KE ++ + + + + +K + Sbjct: 183 FIKDIFQVAQDKDSGLYRITVNYYSPYVAKEWVDWLVADINEVMRNRTIEETTKNLKYLS 242 Query: 232 QLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDV 291 +T++ Sbjct: 243 DQLVK-------------------------------------------------TPITEM 253 Query: 292 AELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGM 351 +L Q L +A V FK +P K P +++IVI+ +G M Sbjct: 254 QSTFYKLIEEQTKSLMLAEAQEEFV----FKVVDPAVVPELKSKPKRSLIVIVGTFMGFM 309 Query: 352 VACGGVLLRYAMASRKQDAM 371 + VL+RYA+ + ++ Sbjct: 310 LGLALVLIRYAIVKNRSESS 329 >UniRef50_A6F1J1 Chain length determinant protein n=1 Tax=Marinobacter algicola DG893 RepID=A6F1J1_9ALTE Length = 317 Score = 77.9 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 53/346 (15%), Positives = 112/346 (32%), Gaps = 58/346 (16%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQEL 82 S++EID+ L LW K ++ AFA G++ + P + ++ ++ P E L Sbjct: 17 SDDEIDIRELFFTLWAGKWIIIIATAAFAAGGVVYALSKPDIYQASVLLAPTEGSSGSGL 76 Query: 83 EKSF---TKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDEL 139 L + + + QS + L +++ + + + Sbjct: 77 SGQLGGLASLAGVSIGADASSKTVIAK--EVLQSRAFLSDFISRHELAVPLMGTNGWNFR 134 Query: 140 DLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLV 199 + V + + + S+ T+W L V Sbjct: 135 ERSWVF------NHKVYNADAAEWRNNSMPTNWDL------------------------V 164 Query: 200 VKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSN 259 K ++V + ++ Q + R I + + S Sbjct: 165 KKLKEQHVSVSENEENGMVTVRVKSQSPVAAQQWATWLVR-----------DINEYMRSQ 213 Query: 260 GQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFT 319 + ++ KL E +T + ++ +L R+ T N Sbjct: 214 DIEEAEASI-------QYLKTKL-TETNITGMQQVFYQLIERETR----TVMLANAQREY 261 Query: 320 PFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 FK +P +K P +A+IV++++++GGM+ + R + S Sbjct: 262 VFKTVDPAVVPQEKSQPKRALIVVVASMLGGMLGVVILFFRAFILS 307 >UniRef50_Q6AS84 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AS84_DESPS Length = 440 Score = 77.1 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 63/429 (14%), Positives = 125/429 (29%), Gaps = 92/429 (21%) Query: 18 PLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPV 77 N+EIDLL L+ +W +K +M +V A L+ +LP + + + + V Sbjct: 26 QSPYFQNDEIDLLGLLHDIWDQRKFLMKIVLAVTLVAFLVLLVLPSTYQARMDIGQADSV 85 Query: 78 QWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKID 137 DL + R + ++K F S +E Sbjct: 86 AL-----VVPVATGQDLLTRSYRFGIVSQYLKSFDSWVT----------FRQGNREGAFT 130 Query: 138 ELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAP-TSEEAQTVLSGYIDYIS 196 + +L V K S + +S+ + + L+G++ ++ Sbjct: 131 DEELQGLQGEFVGLSVQVQAPKPIKGKAVSDPSVLRISYRGGGDNTSVEQRLTGFVLFVD 190 Query: 197 TLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTK-------------------------- 230 + + ++ + K+ R Sbjct: 191 KKAAAYVEQEMEVVIQKAGKEINNKIGLLRHAASVDRGNRITRLLAQQKKDLEQVDMEIS 250 Query: 231 -------NQLDANIQRLNYSLDIANAAGIKKP----------VYSNGQAVKDDPDFS-IS 272 + RL + IA + GIK P V + V D Sbjct: 251 ALKASVLRSRAVRLTRLQENYAIAESLGIKLPTSMDNISERNVSNLKVMVTDQTAMPVYL 310 Query: 273 LGADGIERKLEIEKAVTDVAELNGELRNRQY----------------------------- 303 LG + + ++++I + ++D +L+ Sbjct: 311 LGTEVLAKRIQILREISDKKLYAQQLQPLLEKRELLLGSSELNGLRARKDDDAYIAELPG 370 Query: 304 LVEQLTKAHVNDVNFTPFKYQLSPSLPV---KKDGPGKAIIVILSALIGGMVACGGVLLR 360 L+ +L + + S K P KA+I+ + L+ +A LLR Sbjct: 371 LLSRLQQLDAYTDDLQGVHALQVYSAATGSGHKIKPKKALILATTVLLSCFLAVALALLR 430 Query: 361 YAMASRKQD 369 A+ R++ Sbjct: 431 TALQRRRES 439 >UniRef50_B0VFR9 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFR9_9BACT Length = 395 Score = 75.6 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 65/382 (17%), Positives = 135/382 (35%), Gaps = 35/382 (9%) Query: 25 NEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTP-PEPVQWQELE 83 NE+ LL++I V+ + K V+++ A ++ S ++PQ W S A + P E L Sbjct: 4 NELGLLDIILVIAKRKTLVISICLLVAIGAIIYSLVVPQYWESKATLMPIAESGSLGSLG 63 Query: 84 KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHR 143 F L L ++ D+ + FI QS EE +R + + Sbjct: 64 GGFMDLLGSGL-LQTDKYDMAVDFIYIMQSRKFQEEVIRKFNLIPYYKINEPDTLKAMEL 122 Query: 144 AIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKES 203 A+ LSE + K + + + + L+ YI + ++ Sbjct: 123 AVKKLSESTMQIFY-DQKTYLVNIIAETKNKELSRQIVQYHLDSLNKYILHSKMSKGRQK 181 Query: 204 LENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYS--------------LDIANA 249 E + +++ Q Q R K +I + + +I ++ Sbjct: 182 REFLEKQVDSHLQAVYSLSEQIRDFQKKNRSIDITQQTEAQLELYSDIVAEYMQTEIEHS 241 Query: 250 AGIKKPVYSNGQAVK---------DDPDFSISLGADGIERKLEIEKAVTDVAE------- 293 + + + + G+D + + + D+A Sbjct: 242 LALSQYSADSPVVINLAEKLQLLKKKIKSLEKSGSDLVPEYIVQIDKIPDLAMQYAQMML 301 Query: 294 -LNGELRNRQYLVEQLTKAHVNDV-NFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGM 351 L E + +YL Q A + +V + F+ +P L + P +A+ V++S + + Sbjct: 302 NLEIEKKIIEYLYPQFELAKLEEVKDLPTFEVYDAPQLAGIRSKPKRALTVVISTVAAFI 361 Query: 352 VACGGVLLRYAMASRKQDAMMA 373 ++C L+ ++ ++ A Sbjct: 362 LSCLLALIIESLQGENKEKTQA 383 >UniRef50_Q2LWK4 Hypothetical membrane protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LWK4_SYNAS Length = 342 Score = 74.4 bits (181), Expect = 7e-12, Method: Composition-based stats. Identities = 60/376 (15%), Positives = 114/376 (30%), Gaps = 59/376 (15%) Query: 11 DAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAV 70 + + YP +EI+LL+L V+W+ ++ + A+V A S + + + AV Sbjct: 4 PSPYYGYPPNGLEEDEINLLDLWRVIWKRRRFIGALVVAAVFLTAAASLFMTNVYQAKAV 63 Query: 71 VTPPEPVQ------WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSS 124 + P L F L + L TE +L ++E Y Sbjct: 64 IVPVTAKDGGGGGTLSALASQFGGLPGIALPGSASATEIVSLLKSNVLREKIVERYRLMP 123 Query: 125 PYVMDQLKEAKID---ELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTS 181 +Q K D E ++ + M A K P Sbjct: 124 VLFYEQWDSGKKDWKREEGINLNPLGWLSNMAAAVQPTDAKAVSRQGEEGI------PLL 177 Query: 182 EEAQTVLSGYID---YISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQ 238 +A +L + I + +++ +L K + D + + + A Sbjct: 178 WDALRLLDDMVKINHNIKEQTITLTVDYEDPELAAKMAGYFLETLTDHMTAEAKRVALTN 237 Query: 239 RLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGEL 298 R +E +L + A + + L Sbjct: 238 RA------------------------------------YLEAQL-AKTADPLIRQKIYNL 260 Query: 299 RNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVL 358 +Q +T+ N FK P +P KK P +A++V+LS ++ + Sbjct: 261 IAQQLETAMMTEVKEN----FAFKVIDPPRVPDKKIKPKRALMVMLSFVVALFLGVFSAF 316 Query: 359 LRYAMASRKQDAMMAD 374 + + A + Sbjct: 317 FLEYLEKIRNGAPGEE 332 >UniRef50_C5R191 Putative uncharacterized protein (Fragment) n=2 Tax=Bacteria RepID=C5R191_STRPN Length = 80 Score = 74.0 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 13 HFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVT 72 P P A + NE+D+ L LW K ++ + AFA L +F Q+W+S A+ Sbjct: 19 PMPGKP-AEDAENELDIRGLFRTLWAGKLWIIGMGLAFALIALAYTFFARQEWSSTAITD 77 Query: 73 PPE 75 P Sbjct: 78 RPT 80 >UniRef50_C1TR41 Uncharacterized protein involved in exopolysaccharide biosynthesis n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TR41_9BACT Length = 435 Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 51/394 (12%), Positives = 129/394 (32%), Gaps = 67/394 (17%) Query: 38 RAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIK 97 R K ++ F FA + + + + + V PP+ + ++ V D Sbjct: 29 RRKWFIIKTTFIFAVLAIAYALLATPIYRAETQVIPPQSGSGAM--AALAQMGVPDFAAG 86 Query: 98 -IDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVD 156 + T + + +S +L++ + + + + + + I L EK+ Sbjct: 87 MLGVTTPSDTLVAIVKSRPVLDKVIDKFGLMDREPEPGPLPVEAIKEGINTLKEKLLPSK 146 Query: 157 DNASKKKDE------------------PSLYTSWTLSFTAPTSEEAQTVLSGYID----- 193 ++AS+++ + T+S + + + A + + Y+ Sbjct: 147 ESASEEEKPKFRSDIRRGLANATSATADTKSGIITISVSDTSPDLAAEIANEYVAQLQEL 206 Query: 194 --------------YISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQ- 238 ++ V ++ + + + + +T ++ I+ Sbjct: 207 MQSLAFSQASQQRLFLEDQVKDAQYNLLQAERNLSEYQIRTGILDVGEQTSAVMEGLIKL 266 Query: 239 -----------RLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGA---------DGI 278 R + AN +K+ + S G+ D Sbjct: 267 RAEVTAKEVELRSTQTFATANNPKVKRLQSELASLKEQLKRMEASTGSTMPSDISIKDLP 326 Query: 279 ERKLEIEKAVTDVAELN--GELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGP 336 + LE + + D+ + +QY ++++A V + P ++ P Sbjct: 327 DAGLEYLRLMRDMKFNETLYGMLLKQYESARISEAQEPSV----VQVLAQAEPPERRSKP 382 Query: 337 GKAIIVILSALIGGMVACGGVLLRYAMASRKQDA 370 + +IV+L+ ++GG + G L+ A+ + D Sbjct: 383 KRKLIVVLATVLGGFIGVFGAFLKEFAANAQSDP 416 >UniRef50_Q6AS85 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AS85_DESPS Length = 360 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 64/396 (16%), Positives = 122/396 (30%), Gaps = 78/396 (19%) Query: 2 SSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFIL 61 SS+ +Y ++EIDLL+L+ +W+ + + V L++ L Sbjct: 14 SSIQAPNLCPLSVSNY-----RDDEIDLLSLLVDVWQQRWFIGGAVSVIGALALVLLLAL 68 Query: 62 PQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEA------------------ 103 P + A + P V L + ++ L+ + Sbjct: 69 PSTYEVTAEIEIPSAVSSPLLPALYQQIDTLENLENVPSEMIGEDGNMELPFVLRTPSVG 128 Query: 104 ---------FNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKA 154 FN + +S + Y + + + + + A+ Sbjct: 129 SNPLLAQHRFNRVYQLLKSRDMWLAYQKKTGKTFSAEQGLQAELGRFKGALSV------T 182 Query: 155 VDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIK 214 V KK + T +S E+ L G++ +++ VV E Sbjct: 183 VLAPQGKKNQSITNPTVLGISLRGGGDEKLARELEGFLQFVNERVVTEVSGG-------- 234 Query: 215 TQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAG-IKKPVYSNGQAVKDDPDFSISL 273 +++ + + ++ +L N G +K GQ Sbjct: 235 -----QQIILKGYRDSVENQISLIQLQ------NQVGPMKDSTAGKGQDAG--------- 274 Query: 274 GADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKK 333 ++ A L L Q ++QL + F+Y P +K Sbjct: 275 -----------VASMPATAGLAYGLTQLQSSLQQLQNFSPDLAGLKGFQYLSHPLGEGEK 323 Query: 334 DGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQD 369 P KA+I+ + L G +A LLR A+ RK+ Sbjct: 324 IKPKKALILAATLLFAGFLAIVLALLRTALQRRKEA 359 >UniRef50_C3K6I8 Conserved hypothetical chain length determinant protein n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K6I8_PSEFS Length = 218 Score = 72.5 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 76/221 (34%), Gaps = 33/221 (14%) Query: 12 AHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVV 71 P A P ++EIDL+ LI LW +K T++A A A L +S P++WT++ + Sbjct: 1 MSSPTNSNARPHDDEIDLIPLIQTLWNSKITIIATTVVGAVAALTLSATSPEQWTASTYI 60 Query: 72 TPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQL 131 T P L + ++ D K S+ + + Sbjct: 61 TKPS------LYSLYKEINEKDAPAKASP-----------LSLETKLYSTIQNDIFYSAM 103 Query: 132 KEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGY 191 + L D EP LY + S TA T+ A L Sbjct: 104 GIMAAKSVALK-------------DAPPKSGGSEPVLYIA---STTAKTAALASAQLKSA 147 Query: 192 IDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQ 232 ++ +T + +L + +K +++ KT + Sbjct: 148 METANTEAIALNLPALAAGNTLKAFNTLDEIQTSTQKTTKK 188 >UniRef50_Q21IT7 Lipopolysaccharide biosynthesis n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21IT7_SACD2 Length = 340 Score = 72.5 bits (176), Expect = 3e-11, Method: Composition-based stats. Identities = 49/347 (14%), Positives = 103/347 (29%), Gaps = 57/347 (16%) Query: 25 NEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPV---QWQE 81 + + L L +W K ++A+ F+ + L + LP + S V+ P + Sbjct: 35 DGVTLGELWGAIWGGKFLIIAITAFFSISALFYALSLPNMYKSTLVLAPAQAEGKGGMGA 94 Query: 82 LEKSFTKLRVLD-LDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELD 140 L + L + +++ + I+ +S LE ++ + D Sbjct: 95 LAAQYGGLAAMAGINLGGGDSARIKQAIELIKSWPFLESFISKYNLKSQIMAVQGWDRKT 154 Query: 141 LHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVV 200 + + EPS ++++ V+ Sbjct: 155 AKLIYDYDTYNPVTNAWMLGEGAGEPSSWSTY-------------------------RVL 189 Query: 201 KESLENVRNKLEIKTQFEKEKLAQDRI-KTKNQLDANIQRLNYSLDIANAAGIKKPVYSN 259 L + E + + K N L I DI +A Sbjct: 190 SSMLSVSNDATTGMLNLSVEHYSPEVAYKWVNLLLLEINSFYQQQDIRDA---------- 239 Query: 260 GQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFT 319 Q D + K+ E ++++ + + Q L + + Sbjct: 240 -QKNID-----------YLNAKI-AETNISEMKSVFYSMIESQTKTLMLAEV----SDQY 282 Query: 320 PFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASR 366 K + + ++ P + +I +L + GG+V VLL Y + Sbjct: 283 LVKSVVPAKVAEQRSKPNRVLICVLGVMFGGLVGFILVLLLYFSKNH 329 >UniRef50_A6VA35 Chain length determinant protein n=7 Tax=Pseudomonas aeruginosa RepID=A6VA35_PSEA7 Length = 455 Score = 71.4 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 54/407 (13%), Positives = 123/407 (30%), Gaps = 91/407 (22%) Query: 11 DAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAV 70 D P + P E+DL+ L LW AK V ++ +L ++ + + + Sbjct: 10 DVGMPSSQYSGPERPEVDLVQLFRQLWGAKWLVASITGVGLAVAVLYLLLVVPTYEVSVL 69 Query: 71 VTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQ 130 + P + + + D+ + EA + + + S EY ++ P Sbjct: 70 LRPIQTKALEAVNAR-------DI-YALTPREALDRVASELSAYSGRFEYFQAHPE--RF 119 Query: 131 LKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSG 190 + K + L +A + ++ +K + + + + + P + +L+ Sbjct: 120 QQLNKDNGLSAEQAFWKFNLSAFSMKQADLQKDPQATPFVQIFMQY--PKGMDGAGILND 177 Query: 191 YIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRI----------------------- 227 + ++ LE+++ +++ + QF + + R Sbjct: 178 MVSRTIDSERRQILEDLQARVDSRLQFLAQDIEGKRASYQASKQGRIARLLEADNIRRAG 237 Query: 228 ----------KTKNQLDANIQRLNYSLDIANAAGIKKPVYSNG--------------QAV 263 + K D+ IQ+LN ++ I+ GI KP V Sbjct: 238 LEDELKALRGRLKMVRDSRIQQLNEAIQISTRLGIVKPTTPGALGEVGLDGSRSVFRTEV 297 Query: 264 KDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTK------------- 310 + +G D + + + + Q ++QL Sbjct: 298 NNQQIPLYFMGVDALTAERDTLLKRKGDDFTEPRVAAIQQELKQLENNREVQYLQARQGE 357 Query: 311 -------------------AHVNDVNFTPFKYQLSPSLPVKKDGPGK 338 V D+ + ++P++ P K Sbjct: 358 ERFFDDIEKLRGEQARLQTLKVGDLKIELVRVDQRAAMPLQPIKPRK 404 >UniRef50_A0B7Q9 Lipopolysaccharide biosynthesis n=1 Tax=Methanosaeta thermophila PT RepID=A0B7Q9_METTP Length = 280 Score = 71.0 bits (172), Expect = 7e-11, Method: Composition-based stats. Identities = 48/346 (13%), Positives = 111/346 (32%), Gaps = 74/346 (21%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE 83 ++EIDL ++I VLW + V+ + A +S ++P + ++ +V Sbjct: 6 DDEIDLRDIIRVLWENRFLVVGIFLIAVVAAGAVSIMMPSVYRASCLVALGNFGD----- 60 Query: 84 KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHR 143 V + + F+ S L D+++ + D Sbjct: 61 ------PVYTIQSGASEILTSDAFVLDLLSRLNLSLSPGELAEFKDRMRIEPVKGSDRL- 113 Query: 144 AIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKES 203 ++S EE + +L + + Sbjct: 114 ----------------------------LSISMETTDPEEGKRILREMVSLFEDRSNQSY 145 Query: 204 LENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAV 263 E+ L +++ NQL ++ S++ + A +K+ + G + Sbjct: 146 T-------------EQRGLLLEQLSATNQLLDSV---EESINQTHQA-MKEIEGATGVSS 188 Query: 264 KDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKY 323 + + KL+ + R L+++ H + + Sbjct: 189 LEKSML--------LSYKLDYLQNAES---------QRLGLMDRYMNLHKQLILMKSLEI 231 Query: 324 QLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQD 369 +P++P++ P + +IV ++ ++G M+ LR A+ +Q Sbjct: 232 VEAPAVPLQPVKPRRMLIVGVAGMLGLMLGVFAAFLRVALRREEQR 277 >UniRef50_O66795 Putative uncharacterized protein n=1 Tax=Aquifex aeolicus RepID=O66795_AQUAE Length = 433 Score = 70.2 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 60/383 (15%), Positives = 128/383 (33%), Gaps = 48/383 (12%) Query: 16 DYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPE 75 YP+ +EIDL L VL + + ++ + F + FI P + + AV+ P Sbjct: 56 GYPMYE--EDEIDLYELWVVLKKRFRVILLTLVIFIAGAVAYVFIAPPVYKTEAVIFPIG 113 Query: 76 PVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKE-- 133 + + L L + + + +S +L E + + K+ Sbjct: 114 GEKT----NLPSILEGLPVPLPSVADKVTVE--SVLKSRTLRERVIEKLNLMPVLFKDLW 167 Query: 134 --------AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQ 185 ++ D+ + + +++KK T++F+ E+ Sbjct: 168 DESRNTWRQDLEPEDIPTILDGAELLEDLISVSSNKKTG--------TITFSVEFPEDPH 219 Query: 186 TVLSGYIDYIS-TLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQ----RL 240 I +S K E + + F + ++ + K K + ++ + Sbjct: 220 MAYK--IAQVSLEEAYKILNEKSWSLAKKHRIFLENQIKEVLNKQKVLEEVYLKFIKGEI 277 Query: 241 NYSLDIANAAGIKKPVYSNGQAVKDDP-DFSISLGADGIERKLEIEKAV-TDVAELNGEL 298 + + I K + +D D +L +ER + I K + ++ E Sbjct: 278 KEVPIVVDERFISKIFKESLNYENNDKFDIPGNL-KQNLERNIPIAKGMNRNLPEYQFNY 336 Query: 299 RNRQYLVEQLTKA-----------HVNDVN-FTPFKYQLSPSLPVKKDGPGKAIIVILSA 346 + Q+ E L N+V F+ P +P K P KA+I+ +S Sbjct: 337 QKLQWQFEVLKNLLSTLFQQYQIAKANEVKESVSFQIIDPPYIPQKPAKPKKALILAVSF 396 Query: 347 LIGGMVACGGVLLRYAMASRKQD 369 + G + + + ++ Sbjct: 397 VSGLFTGIFLAFFKEWLNNARKR 419 >UniRef50_A4BYL5 Putative uncharacterized protein n=1 Tax=Polaribacter irgensii 23-P RepID=A4BYL5_9FLAO Length = 371 Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 58/362 (16%), Positives = 132/362 (36%), Gaps = 27/362 (7%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTP-PEPVQWQEL 82 ++ ID++ L+ W A+++++ + FA GL ++ ++T++ P + Sbjct: 13 DDSIDIIALLKEFWNARRSILKITLVFAFLGLFVAIFSKNEYTASTTFVPLVQGKSSGGS 72 Query: 83 EKSFTKLRVLDLDIKIDRTEA-------------FNLFIKKFQSVSLLEEYLRSSPYVMD 129 S L ++L E F L + Q +E L S Y + Sbjct: 73 LGSLASLAGINLGGGGSSDEISPELYPLIVNSIPFQLELLNTQLTIEGQEQLVSYQYYYE 132 Query: 130 QLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLS 189 + + + + S + + +A + + +S + S +++ + Sbjct: 133 NIYSPGVLHIIKKYTLGLPSLLISFLKSDAEIIEKNTLDKENEIISISQTESVLIKSLKA 192 Query: 190 GYIDYISTL-VVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLD-IA 247 ++ + K ++ + +I +LNY + A Sbjct: 193 QLGLSVNAKEGYISISVTLPEAKASAELALKAQITLQDYALNFKTQKSIAQLNYIKERYA 252 Query: 248 NAAGIKKPVYSNGQAVKDDPD-FSISLG-ADGIERKLEIEKAVTDVAELNGELRNRQYLV 305 V +D + + SLG ++ + + + A + +EL +L +Q V Sbjct: 253 EKKDEFNSVKFTLARFQDQNNGINTSLGRTKLLQLQSDYDLAFSVFSELAKKLETQQLQV 312 Query: 306 EQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 ++ + F S+P +K GP +AII+I+ +G +++ G +L + + S Sbjct: 313 KK---------DTPLFTVLKPVSIPSEKSGPKRAIILIVYLFLGFVISLGAILGKKYLKS 363 Query: 366 RK 367 K Sbjct: 364 LK 365 >UniRef50_C1DT90 Ferric enterobactin transport protein n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DT90_SULAA Length = 277 Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 52/346 (15%), Positives = 109/346 (31%), Gaps = 81/346 (23%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE 83 +EIDL L LW+ KK + ++ L++F +P+++TS + + L Sbjct: 10 EDEIDLFELFEKLWKRKKIIFSITLLGTLIATLVAFTIPKQYTSESSIVVVNINTSPSLS 69 Query: 84 KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHR 143 L +L ++ + S L E+ L+++ I+ + Sbjct: 70 LDRESLYIL--------SQLNFPILPILNSKDLAEKVLKNN--------NLNIEPEKFIK 113 Query: 144 AIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKES 203 + + KK + + +S + A+ + Y+ + VV ++ Sbjct: 114 ---------NNLKVDQDKKSGQNKKNEVFRISISWYDPNTAKKLNEDYLIELK-KVVNQN 163 Query: 204 LENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAV 263 L +LE + Q E L + K + D Sbjct: 164 LNQFLTQLENQYQKRLELLNIEYKKAMVEKD----------------------------- 194 Query: 264 KDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKY 323 E K+E+ K + L L + + + VN + Sbjct: 195 ---------------ELKMELVKNQVEKISSGYYLLE---LFKNNKEGFIKVVNSPSY-- 234 Query: 324 QLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQD 369 P P K +I+ + + ++ L+ A +R+++ Sbjct: 235 ------PTAPSKPKKGLILAIGFVSSLFLSLFVALVVEAWENRRKN 274 >UniRef50_C4KCI7 Lipopolysaccharide biosynthesis protein n=1 Tax=Thauera sp. MZ1T RepID=C4KCI7_THASP Length = 407 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 57/397 (14%), Positives = 134/397 (33%), Gaps = 22/397 (5%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 M+ +++ + + ++EI LL+L VL + KK ++ + + + + Sbjct: 1 MNESTMQKAAIESPQGQMVVVEDDDEISLLDLAIVLAKFKKLILGLPVLVGALTVGATLL 60 Query: 61 LPQKWTSAAVVTPPEPVQ-WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEE 119 + +T+ + PP+ Q +L++ +S ++ + Sbjct: 61 MTPIFTATTAILPPQQSQSTASALLGQLGGLAGIAGAAAGIKNPSDLYVGMLKSRTVADA 120 Query: 120 YLRSSP---YVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 176 + Y D+ E L+ + A + + + + + + ++ Sbjct: 121 MIARFDLVNYYEDEFAEDARKSLENVSSFTAGKDGIITISVDDKDPELAAKMANAYVEEL 180 Query: 177 TAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLA--------QDRIK 228 T A T S + +V V ++E ++ E+ LA + Sbjct: 181 NRLTEVLAVTEASQKRLFFERQMVDARDRLVAAEIEARSAMERGGLASIDAQGQAMIEVT 240 Query: 229 TKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQA--VKDDPDFSISLGADGIE------R 280 + + +++ + A AA + P Q + + + GA + Sbjct: 241 ARLRGQISVKEVEIGAMRAFAAE-ENPRLKAAQQELLALQTELARIEGASALRDTQVGGE 299 Query: 281 KLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTP-FKYQLSPSLPVKKDGPGKA 339 + + + Q L +Q A + + + + + P +K P +A Sbjct: 300 SSAAATNLQLLRNVKYYETLYQMLAQQFELAKIEEAKDSALIQVLDTAIPPERKSKPKRA 359 Query: 340 IIVILSALIGGMVACGGVLLRYAMASRKQDAMMADHL 376 +IVIL+ L G VA ++ A +D A+ + Sbjct: 360 LIVILAVLAAGFVAVLIAFMKEAAQRAAEDPESAERM 396 >UniRef50_C2M1S4 Putative uncharacterized protein n=1 Tax=Capnocytophaga gingivalis ATCC 33624 RepID=C2M1S4_CAPGI Length = 370 Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 51/363 (14%), Positives = 117/363 (32%), Gaps = 14/363 (3%) Query: 22 PSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQE 81 ++EIDLL L+ + + KKT+ F G+ I+ +++T+ ++V E Sbjct: 6 QKDDEIDLLALLQKIVQGKKTIFKCFLVFFVIGVFIAIFSKKEYTATSLVLAQENNAAAG 65 Query: 82 LE-KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKID--- 137 L ++L + L+ QS+ L + ++ + Q I Sbjct: 66 GSLSGLASLAGINLSSGSSDLISPKLYTSIAQSIPFLRKMIQ--ARIKVQQSNTPITYQE 123 Query: 138 ---ELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDY 194 + D + + + + K T + T E + Sbjct: 124 YYQKYDKGNFLDVIQKYTIGLPSLIVDKVTPSEENTPQYTTSEKDTLEVYPLTHEEKGLF 183 Query: 195 ISTLVVKESLENVRNKLEIKTQFEKEKL--AQDRIKTKNQLDANI--QRLNYSLDIANAA 250 + N ++ + ++ + AQ + KN L I + + Sbjct: 184 GLLKSQLKITNNDKDNTVSLSFSMEDPVAAAQMLEQAKNYLQETIIEFKTRKAKKQLEFI 243 Query: 251 GIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTK 310 + K + G+ + + + ++ N L +Q Sbjct: 244 QKQYEEAEKSFKEKQIRLAAFQDSNRGLITAVPMTRQSQLQSDYNLAYNLYVELAKQYEN 303 Query: 311 AHVN-DVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQD 369 + + F S+P++K P K +I+ + + +G ++ G + + M + K Sbjct: 304 QKIKVQEDTPAFITIEPVSIPLEKSKPKKGMIIAIWSFLGIVIGIGTIFAKDFMKAMKNR 363 Query: 370 AMM 372 + + Sbjct: 364 SAV 366 >UniRef50_B3E8V9 Lipopolysaccharide biosynthesis protein n=4 Tax=Desulfuromonadales RepID=B3E8V9_GEOLS Length = 422 Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 70/414 (16%), Positives = 141/414 (34%), Gaps = 68/414 (16%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 MS + H YP+ EI+LL+L+ VL + + ++ V F A +I+ Sbjct: 1 MSQTDPPPKKSIHTTPYPV----EGEINLLDLLLVLAKRWRMIIGVPFVVAAITAIITLF 56 Query: 61 LPQKWTSAAVVTPPEPVQ--WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLE 118 +P +T+ ++ P E L L + + +L++ +S Sbjct: 57 MPNIYTAKTMIIPSEDSSSGMGALMAQLGGLVTM-AGGPLGGKTTADLYVTMLKS----- 110 Query: 119 EYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTA 178 + +K+ ID+ L A + + + + T+SF+ Sbjct: 111 ----------ETVKDPIIDKFKLMEKYEAKLRSNVYLTLDGATAINLGKKDGVITVSFSD 160 Query: 179 PTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQ 238 + A + + Y+D + L + ++ N + E D K + +L Q Sbjct: 161 EDPKLAAAIANEYVDQLGKLSAQLNMTGATNNRRFLEKQITET-KADLSKAEEELKI-FQ 218 Query: 239 RLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGA---------------DG----IE 279 N S+ + + A K + Q + LG + Sbjct: 219 SKNKSISVPDQA--KATIEGVAQLRAQLAVKEVELGTLQRQFTDNSQEVKSVKAAVAQLR 276 Query: 280 RKLEIEKAVTDVAELNGEL-----------------RNRQYLVEQLTKAHV-----NDVN 317 ++ + + + +L + ++ ++E LTK + + Sbjct: 277 GQIASLEGKGNSSSAIPQLGAVPQLGQDYLRLMREFKIQEAVLEMLTKQYEMAQVSEAKD 336 Query: 318 FTPFKYQLSPSLPVKKDGPGKAIIVILSALI-GGMVACGGVLLRYAMASRKQDA 370 PF+ +P +K P +A IVIL+A G ++ LL + R +D Sbjct: 337 TAPFQLLEKAKVPERKSKPKRAQIVILAAFATGFLMVLLAFLLNFVEQMRPEDR 390 >UniRef50_A4EGG2 Succinoglycan biosynthesis transport protein exoP n=3 Tax=Rhodobacteraceae RepID=A4EGG2_9RHOB Length = 731 Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 67/432 (15%), Positives = 141/432 (32%), Gaps = 90/432 (20%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISF-ILPQKWTSAAVV-TPPEP 76 + ++EIDL LI LWR K ++ AG +F + +T+ A V Sbjct: 37 VIPSEDDEIDLGALIGTLWRGKLWIILSAVIALVAGGYYAFGVATPVYTTTASVALESRQ 96 Query: 77 VQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIK-------------KFQSVSLLE----- 118 Q +++ + L + I + + + +F S E Sbjct: 97 EQIVDIDSVMSGLSGDQITINTEVEVLRSRRLMGKLVDDLNLVADPEFNSTLTDETWYSL 156 Query: 119 -----------------EYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASK 161 L+S+ + D + +A ++++ + + + V +N +K Sbjct: 157 GAMADAIRENIFGQPAGNLLQSNEAIRDSVVDAVLEQISVSNVRQSYVFNISVVTENPAK 216 Query: 162 KKD----EPSLYTSWTLSFTAPTSEEAQTVLSGYID--YISTLVVKESLENVRNKLEIKT 215 LY + + EA L+ + I + L+ + ++ + Sbjct: 217 SAAMANRLAELYVEDQIVLKFEKTAEATEWLTDRVAELQIELEASENQLKEFSSNTDLIS 276 Query: 216 QFEKEKLAQDRIKTKNQL----------DANIQRLNYSLD---------IANAAGIKKPV 256 L + +++ A + LN + D +AN +++ Sbjct: 277 PEGLVGLNRQLKDLRDRQAGIDAEVAANVARVAALNAAFDSGDLLQMAAVANDTALRQLA 336 Query: 257 YSNGQAVKD---DPDFSISLGADGI-------------ERKLEIEKAVTDVAELNGELRN 300 +N A + F+ L + + +EI +++ + L+ Sbjct: 337 ATNDTAAIENQFQTRFATILARAVMARDRSVAQADTVAQSMVEITQSIATQSNELVALQQ 396 Query: 301 RQ-----------YLVEQLTKAHVND-VNFTPFKYQLSPSLPVKKDGPGKAIIVILSALI 348 Q + + +L + V + + LP P KA+I+ S ++ Sbjct: 397 LQRETEASRLIYEFFLGRLKETSVQQGLQQAESRILSYAVLPSAPSAPRKAVILTFSMIL 456 Query: 349 GGMVACGGVLLR 360 G +V G VLLR Sbjct: 457 GLIVGTGLVLLR 468 >UniRef50_A7AKH2 Putative uncharacterized protein n=2 Tax=Parabacteroides RepID=A7AKH2_9PORP Length = 364 Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 49/364 (13%), Positives = 120/364 (32%), Gaps = 42/364 (11%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQW 79 S +EIDL+ L LW+ ++ + AGL+I+F +P+++T+ + P Sbjct: 8 PSSPQSEIDLIALSGYLWKKRRFFIKCCGIATVAGLIIAFSIPKEFTTTVKLAPETTDAT 67 Query: 80 QELEKS--FTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKID 137 ++ + +DL + S +L + + S+P++++ E D Sbjct: 68 SKMSNLGGLAAMAGIDLGSASGQDAL---------SPNLYPDIVHSTPFLLELFPEKVTD 118 Query: 138 ELDL----HRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYID 193 + +A ++ P + SF + E + + Sbjct: 119 KEKKYTTTLYDYIAGHQRFAWWSILM----KAPLKGIAALRSFFSGNEENDGDLNPFQLT 174 Query: 194 YISTLVVKESLENVRNKLEIKTQFEKEKLAQD--RIKTKNQLDANIQ--------RLNYS 243 + V+K + + ++ KTQ ++ I I+ R + Sbjct: 175 HKQEDVLKNLRQRITVYVDKKTQVVTLGVSMQDPLISADVAHSIVIKLQTYITHYRTQKA 234 Query: 244 LD-------IANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNG 296 + + A +D + +I + + E + + Sbjct: 235 KKDLEFTEKVLKESRSAYYKAQQAYAAFEDGNKNII--SASYRTEQERLRNEMTLTFNVY 292 Query: 297 ELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGG 356 ++ ++L + ++P+K P K +I++ + + CG Sbjct: 293 NTLAQKLEQDKLRVQE----QTPVYTIIEPATVPLKASSPKKLLILVAFIFLAFIGGCGY 348 Query: 357 VLLR 360 ++++ Sbjct: 349 LIIK 352 >UniRef50_Q2SJH6 Uncharacterized protein involved in exopolysaccharide biosynthesis n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SJH6_HAHCH Length = 317 Score = 67.9 bits (164), Expect = 6e-10, Method: Composition-based stats. Identities = 60/373 (16%), Positives = 124/373 (33%), Gaps = 97/373 (26%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE 83 +NE+ L +++ LW+ K ++++ A L+++ P + S+ ++ P + Q L Sbjct: 14 DNEVSLRDILLTLWKGKWIIISLTVLSLVAALVMAKNQPNIYKSSILLVPAQEEQKGGLA 73 Query: 84 KSFTKLRVLDLDIKID--------RTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAK 135 + L I+ L ++F + L +E ++SS ++ + KE+ Sbjct: 74 GIAGQFGGLASIAGINIGGGKSDVAEALAILKSQEFLTRFLKDEQIKSSLFIENWNKESG 133 Query: 136 IDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW-------------------TLSF 176 E + +L ++K + EPS ++ T+S Sbjct: 134 QWEK-KDSFLGSLWGRLKGDSNPKDPSSLEPSWQKTYQLFISKHLSVSEDPKSGLVTVSV 192 Query: 177 TAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDAN 236 A E+A + ID +++ V + K + + + K L+A Sbjct: 193 MAYEPEDAAHWAALLIDKLNSHVRLQ-----------KKAEAERSIEYLNNQIKLTLNAE 241 Query: 237 IQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNG 296 +QR+ Y L A + K+ + +V D Sbjct: 242 MQRVLYQLVEA-------------------------------QAKVAMLASVRDDY---- 266 Query: 297 ELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGG 356 F+ +P +K P + +VI+ + G + Sbjct: 267 -----------------------VFRVIDPAFIPEQKYKPNRFQMVIVGGIAGCVFGVLL 303 Query: 357 VLLRYAMASRKQD 369 VL + +KQ Sbjct: 304 VLFIQIITEKKQS 316 >UniRef50_Q9CNG7 Putative uncharacterized protein n=1 Tax=Pasteurella multocida RepID=Q9CNG7_PASMU Length = 277 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 47/329 (14%), Positives = 109/329 (33%), Gaps = 78/329 (23%) Query: 42 TVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIK--ID 99 ++ A S++ + W + A V+ P+ + + + + Sbjct: 20 IILGTTLLGAIVAYGGSYLKSKTWLAEAHVSAPDIALLGNYYALSSTYQFIKNKENQRQE 79 Query: 100 RTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNA 159 + F+K+ S ++ + ++ Y K+ D +DL + L++ +K Sbjct: 80 TEIVYQEFLKQLMSEEMIRRFWENTEYYKQ--KQTGEDHIDL-ALLEKLTKAIKFKSAQT 136 Query: 160 SKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEK 219 D +S + A +LS +ID ++ K N+ ++ ++ + K Sbjct: 137 LDVADS--------VSLALENPKLATELLSSFIDQVNVETRKIVYSNLISQWKVLFEQVK 188 Query: 220 EKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIE 279 + + K A +A L ++ Sbjct: 189 KATEFNLGKN-----------------AQSA----------------------LVSEDWN 209 Query: 280 RKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKA 339 KL++ ++V+ + D F+ ++Y P+ P+ + P + Sbjct: 210 GKLQMMRSVSPL-----------------------DEQFSAYRYLKKPTQPIMQRSPNRK 246 Query: 340 IIVILSALIGGMVACGGVLLRYAMASRKQ 368 + ALIG +++ +L SRK+ Sbjct: 247 CWASVGALIGFILS-FFML--SLFNSRKK 272 >UniRef50_A8FXK9 Chain length determinant family protein n=1 Tax=Shewanella sediminis HAW-EB3 RepID=A8FXK9_SHESH Length = 317 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 51/353 (14%), Positives = 108/353 (30%), Gaps = 65/353 (18%) Query: 23 SNNEI-DLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQE 81 SN E+ + ++LWR K ++ + A ++ + +P + ++A+ P Sbjct: 10 SNTEVVSFKAMFAMLWRTKWFIIVFTGLISVATVIYAINVPNVYRASAIYLPKSSDDAGG 69 Query: 82 LEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDL 141 L + + L I NL + E+++S ++ + Sbjct: 70 LAQLAGQFGGLASMAGI------NLGGGGADKTAAAIEFMKSRAFLQAFID--------- 114 Query: 142 HRAIVALSEKMKAVDDNASKKKDEPSLYTS----WTLSF-----TAPTSEEAQTVLSGYI 192 R + K + + +P LY W + PT+ EA + I Sbjct: 115 KRDLTVPILAAKGWEQESGNLLIDPELYDESKQVWVRAAPPGFQVTPTAWEAYDLFRKMI 174 Query: 193 DYISTLVVKESLENVR-NKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAG 251 + ++ ++ + K + Q+ IA Sbjct: 175 SISEQSKKGFVKIELEYYSPDLAAKWLGWLVEDLNAYWKTREHEQTQK-----SIA---- 225 Query: 252 IKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKA 311 L +L ++V +L Q L + Sbjct: 226 --------------------FLTKQAENAQLSELRSV------FYQLIAEQTKNTVLAEV 259 Query: 312 HVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMA 364 ++V F + P +K P +A++ +L +GG+++C L A+ Sbjct: 260 S-DEVLFETIAPIVVPE---QKSAPSRALLCLLGFALGGVLSCILGLFYCAIR 308 >UniRef50_C5V7I4 Lipopolysaccharide biosynthesis protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V7I4_9PROT Length = 343 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 50/349 (14%), Positives = 124/349 (35%), Gaps = 38/349 (10%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQEL 82 ++EI+L++L+ V+ + + ++ + A ++ + + P +T+ V+ PP+ Sbjct: 15 QDDEINLMDLLLVIAKHNRFIIKLTLGAAVLAVIYALMQPNIYTAKTVLMPPQQPSSSTS 74 Query: 83 EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLH 142 + + + L L+S +K K+ EL Sbjct: 75 VLLGQLGGLAGMAGGALGVK---------NPSDLYAGMLKSHMIEDALIKRFKLMELYQA 125 Query: 143 RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKE 202 + + + ++ A+ K T+ ++ + A + + Y++ + +LV + Sbjct: 126 KTMEPVRAALEGSTVVAAGKD------GFITVEYSDKDPKLAAAIANAYVEELDSLVRTQ 179 Query: 203 SLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQA 262 + L K +EK+ + +L+ + + + + + G A Sbjct: 180 AARE---ALGRKQFYEKQLADVRAGLGRAELEMKVFQ--------DQNRVFQLGGGAGVA 228 Query: 263 VKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVN-FTPF 321 + + +LE + DV + +Q+T A ++ Sbjct: 229 LGASGGIP--------KAELEYVRIARDV---KYNEMLLAAMAQQVTSATIDAAKNLPTL 277 Query: 322 KYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDA 370 + +P KK P +A+IV+L+ ++ + +R A Q+ Sbjct: 278 QVLDKALVPEKKSKPKRAMIVMLATILAFFIGIIWAFVREAGERSGQNP 326 >UniRef50_A4SDR7 Lipopolysaccharide biosynthesis protein n=2 Tax=Chlorobium/Pelodictyon group RepID=A4SDR7_PROVI Length = 343 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 55/347 (15%), Positives = 114/347 (32%), Gaps = 40/347 (11%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE 83 +EI LL+L L + KK ++ FA A + + P +T+ + PP+ Sbjct: 20 EDEISLLDLAITLAKYKKLIIGAPFAIAVLVSIYTLFQPNIYTADTRILPPQQQSNASAM 79 Query: 84 KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHR 143 S + + ++ +S L ++ E D Sbjct: 80 LSQLGALGALGGGSLGIKNPNDTYVAMLESRPLQNSMIKRFKLQAVYEAETLADARKTLE 139 Query: 144 AIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKES 203 + ++ + T+S A T+ +GYI Sbjct: 140 GVTTVTTGKDGL----------------ITVSVDDQDPIRAATLANGYI----------- 172 Query: 204 LENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANA-AGIKKPVYSNGQA 262 + ++ +++ + + K + + SL G+ + GQ Sbjct: 173 -DELQKLMQVFAVTDASQRRIFFEKQLHLAKEELADAEVSLKQLQQRTGVLQLAAQAGQL 231 Query: 263 VKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFK 322 + I+L RK+ K + E+ +QY + +L ++ + V + Sbjct: 232 MGTGQAPDIAL---RYIRKVRDMKYAETL----YEILAKQYEMAKLDESKESTV----IQ 280 Query: 323 YQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQD 369 +P K P ++ IV+++AL G +A + A+ K+D Sbjct: 281 VLEKAVVPQDKSKPQRSKIVLIAALATGFLAILYAFIAEALNKAKED 327 >UniRef50_C8PNG3 Chain length determinant protein n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PNG3_9SPIO Length = 337 Score = 66.3 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 65/364 (17%), Positives = 120/364 (32%), Gaps = 53/364 (14%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISF----------ILPQKWTSAAVVTP 73 + EI LL+L +VLWR K+ ++ V + A + +F +P +TS A + Sbjct: 8 SEEISLLDLAAVLWRWKQLIIGVTVLLSIAVFVYTFIGKKMDPEKSFMPDVYTSTAFMRI 67 Query: 74 PEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKE 133 S + + N + Y+ +S +D + + Sbjct: 68 QSGNSSASGALSSLLQQSGLGGLTGGIGAGGNTTQQLAF-------YIANSNSFLDTIAD 120 Query: 134 AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYID 193 +E V K DE S ++L+ T AQ +D Sbjct: 121 ELHISEKYKIKKFIKTESRTIVKGLIKAKMDEKS--GVFSLAATHIDPVFAQKAALLAVD 178 Query: 194 YISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIK 253 Y + L+ K + Q+ K+ Q I+RL A ++ Sbjct: 179 YYEKRFAELGLD------------TKVQEKQNLEKSLEQSFNEIKRLEQ-----EAGDLE 221 Query: 254 KPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHV 313 + +G +L + I+R++ +++ V + EL + Sbjct: 222 NKIAQSGGIKGA------ALAMEQIKREISVQERVYGQLKAQYELLKVEM---------- 265 Query: 314 NDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMA 373 F+ P +P KK GP +A I I++ G + L A+ +D + Sbjct: 266 -ASETPVFQILDMPEIPEKKSGPSRAKICIIAFGAGLFFSIFLAFLLNALQEIWKDPVFR 324 Query: 374 DHLV 377 L+ Sbjct: 325 AKLL 328 >UniRef50_C9PPK9 Lipopolysaccharide biosynthesis protein WzzE n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PPK9_9PAST Length = 282 Score = 65.6 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 26/196 (13%), Positives = 70/196 (35%), Gaps = 10/196 (5%) Query: 41 KTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDR 100 ++ + A SF++ ++W + A V P + + + Sbjct: 20 VLILILTGLSAAIAYAASFLIKKEWRAEAYVGAPTANSLGNYYSLSSMYQFVSGKPTDTT 79 Query: 101 --TEAFNLFIKKFQSVSLLEEYLRSSPYVMDQL-KEAKIDELDLHRAIVALSEKMKAVDD 157 + F K+ S ++ ++ R++ + + E D+ +L R +L + + Sbjct: 80 PMDFVYREFKKQAGSYDIVVDFWRNTDFYKQKQTGENVFDQQELERLANSLGFTPQQAIN 139 Query: 158 NASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQF 217 S+K + +S T + ++A +LS ++DY++ + + ++ Sbjct: 140 GLSEKIGD-------RISLTLGSPKQATELLSDFVDYVNLKTRSVVYNELIYRWKVLFDE 192 Query: 218 EKEKLAQDRIKTKNQL 233 K+ + + Sbjct: 193 VKKAGELNVGNMQKNN 208 >UniRef50_Q65U41 Putative uncharacterized protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65U41_MANSM Length = 260 Score = 65.2 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 66/193 (34%), Gaps = 15/193 (7%) Query: 43 VMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFT--KLRVLDLDIKIDR 100 ++ AG S++ WT + + P + ++ +L + + Sbjct: 19 ILLSACIGGAAGYGSSYLAKNLWTVQSSLEKPALTELGNYYSLYSTYQLLNNEKANQDPT 78 Query: 101 TEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNAS 160 + FN F + S + + ++ Y +L D + + LS ++K +D NA+ Sbjct: 79 GDIFNRFKQLAGSYEHAKVFWENTDYYKQKL---TDDSQHDSQLLDQLSREIKLLDTNAA 135 Query: 161 KKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKE 220 + LS + A+ +L+ YIDY K + K + Sbjct: 136 TTQ----------LSLELDNPKRARELLTEYIDYTGLANRKNIYGELIVKWKTLFDQVNS 185 Query: 221 KLAQDRIKTKNQL 233 + T+ Q Sbjct: 186 AANLNVADTERQK 198 >UniRef50_Q5P6W3 Putative uncharacterized protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P6W3_AZOSE Length = 396 Score = 64.8 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 85/238 (35%), Gaps = 36/238 (15%) Query: 13 HFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVT 72 P+ P A +NEIDL L+SVLW+ K ++ A G+ S + K+ + + Sbjct: 3 STPNNPPA-HEDNEIDLRQLVSVLWKQKLLIVGAGVLCAGVGVGASLLST-KYVAEGLFL 60 Query: 73 PPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQ-- 130 P + F+ F + L++YL+ + + + Sbjct: 61 TPGVSATN-----------------------YKRFVSVFSNGPRLQQYLQDTGALATRDG 97 Query: 131 -----LKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFT--APTSEE 183 L E + ++ R A ++K + + DEP + F+ PT Sbjct: 98 ALLFGLAENQDRLVETLRPEFAFTDKDQKAFGVKVAEDDEPGAMIGVRIQFSHKEPTGGT 157 Query: 184 AQTVLSGYIDYISTLVV--KESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQR 239 T+L+ Y+ V K L + + + +L+ D T+ + A R Sbjct: 158 PVTLLAEYVRDTVIRVNFEKALLARCADFRTREQELRNAQLSNDFAITQEERRAATLR 215 >UniRef50_C1F864 Chain length determinant protein domain protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F864_ACIC5 Length = 411 Score = 64.4 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 57/370 (15%), Positives = 118/370 (31%), Gaps = 36/370 (9%) Query: 22 PSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQE 81 +EI LL+L++ L R K + + G+L++F+LP+K+T+ + PP+ Sbjct: 15 QQEDEISLLDLLAALGRKKHIAIRTIAVMLVIGILLAFLLPKKFTAEVTLLPPQQQSSLS 74 Query: 82 LEK--------SFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKE 133 + L L +K +F + +++ +Y + Y + Sbjct: 75 SMLSSQLGGLGAVASLAGGGLGLKNPNDRYIAMFKSQTVEDAMIRKYGLMAEYHAKLMSA 134 Query: 134 AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYID 193 A+ + + + + L + F + A + S Sbjct: 135 ARKAFEGHVKLDGTTKDGLIHISVTDRSPARAAELANGYVEQFRKLSEHLAISEASQRRL 194 Query: 194 YISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQL--------------DANIQR 239 + + E+ N+ N E + E++ L + IQ Sbjct: 195 FYQQQ-MAEAKSNLTNAEEALVKTEEKSGMIQVGSQAEALIQSGAQLRAQIAAKEVEIQG 253 Query: 240 LN-YS------LDIANA--AGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTD 290 L ++ L A AG++ + + + D I L+ + D Sbjct: 254 LQAFAAPGNPNLLQAQQELAGLRAQLAKLAGSGGNTKDQLIVPQGKLPVAGLDYLRKYRD 313 Query: 291 VAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSL-PVKKDGPGKAIIVILSALIG 349 V L +Q A +++ + P++ P K P + +I+ G Sbjct: 314 VT---YYQTIFNVLAQQYELAKIDEAKEGALIQVVDPAIPPDHKSAPKRLLILAGCLFAG 370 Query: 350 GMVACGGVLL 359 + LL Sbjct: 371 IFLGVMLALL 380 >UniRef50_B7AIQ3 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=B7AIQ3_9BACE Length = 371 Score = 64.0 bits (154), Expect = 9e-09, Method: Composition-based stats. Identities = 55/375 (14%), Positives = 132/375 (35%), Gaps = 42/375 (11%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQW 79 P EIDL+ L +W +K V A GL+++F +P+++++ + P + Sbjct: 12 QQPEEQEIDLIELAQKVWAERKLVFKACGIAALIGLVVAFSIPKEYSTKVTLAPESAGKT 71 Query: 80 QELE-KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 + + ++L +A S L + ++S+P++++ D+ Sbjct: 72 SAGGMGALAAMAGINLGGASAGEDAL--------SPELYPDIVKSTPFLLELFDVKVKDQ 123 Query: 139 LDL-HRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 197 + A +K + + WTLS E+ + + + + Sbjct: 124 KGKVDTTLYAYLDKYQRSSWMGAVVSAPFKALG-WTLSLFKDKPEKREGKIDPFHLTVDE 182 Query: 198 -LVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQR----------------- 239 V + + + ++ KT ++ L + Sbjct: 183 TRVAEALSKRILVTIDKKTGVTTLEVTMQDPLISASLTDTVMHCLQNYITDYRTNKARHD 242 Query: 240 LNYSLDIANAAGIKKPVYSNGQAVKDDPDFS-ISLGADGIERKLEI--EKAVTDVAELNG 296 L ++ + A A D + + I L + +L+ E A T +++G Sbjct: 243 LAFTEKLYKEAKADYEEAQKKYATFADANQNIILLSYRAEQERLKNEMELAYTVYTQVSG 302 Query: 297 ELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGG 356 +L+ + V+++T + ++P++ P K +I+I + G+ G Sbjct: 303 QLQMARAKVQEIT---------PVYTVVQPATVPLRAAKPNKIMILIGFVFLAGVGCVGW 353 Query: 357 VL-LRYAMASRKQDA 370 +L ++ ++ + Sbjct: 354 ILFVKDLFKEWRKAS 368 >UniRef50_B8E0I3 Lipopolysaccharide biosynthesis protein n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E0I3_DICTD Length = 463 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 83/213 (38%), Gaps = 19/213 (8%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE 83 +EI L L ++W+ K ++ + F L+ S + P+ + + V+ P+ Sbjct: 8 EDEISLAELFYIIWKRKILIITLFIVFITVALIYSLLAPKIYEAKTVILLPQQSGSTSAL 67 Query: 84 KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHR 143 + + + L I + T + + L+S K+ K++ + Sbjct: 68 SALAQSLPISLGIPLSSTP-----------SANMVAILKSRSAAEYVFKKLKLEGYFKAK 116 Query: 144 AIV-ALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKE 202 AL + MK++ + K++ TL+ A + A + + Y++ +S + Sbjct: 117 NYEDALEQLMKSIKVTTNDKENT------ITLTAEAKDPKLAADIANTYVEALSNINASL 170 Query: 203 SLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDA 235 + + E + E++ +D + +N+L Sbjct: 171 GVYTAKRTKEFLEKQI-ERVKKDLEQAENRLKE 202 >UniRef50_C1XU43 Chain length determinant protein n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XU43_9DEIN Length = 323 Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 59/360 (16%), Positives = 126/360 (35%), Gaps = 59/360 (16%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQW 79 A+ +EI L +L VL R + ++AV A IS ILP+ + S A ++ Q Sbjct: 4 AAQPQDEISLRDLYLVLKRNARMILAVTLGAALVTFAISMILPKTYRSQANLSLSVTSQQ 63 Query: 80 QELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDEL 139 Q + L L + F + ++ Sbjct: 64 QLSGQILANLPSL--------SGLAGSFQDRLETR------------------------- 90 Query: 140 DLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQ----TVLSGYIDYI 195 L++ + + + + W LS + EEA+ +L+ D++ Sbjct: 91 -------ELAQSLGVANPASRYQAKFDDKTGIWRLSAKGSSPEEARRATEKLLATARDFL 143 Query: 196 STLVVKESLENVRNKL-EIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKK 254 + + + N+ L + + E ++ IK + ++ A + Sbjct: 144 ESKLAQTVNSNLAALLAQARIDAESAQIGLQEIKKALANTPPTVGADAAVASALESQGVN 203 Query: 255 PVYSNGQAVKDDPDF-SISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHV 313 P+ + + P + S+ L + +L +A + + RN Q ++ Sbjct: 204 PLVARATS----PAYASLKLQEANLRSQLA--QAQARIETYSRLARNPQ----EIRTLVG 253 Query: 314 NDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMA 373 + P ++PS P++ P + ++A++G +++ L A+A R+ + A Sbjct: 254 QALQIQP---LVAPSEPLRPVSPRPLLYAAIAAVLGLILSVFWAFLAEALAPRRPEPEAA 310 >UniRef50_B5YEW0 Lipopolysaccharide biosynthesis n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YEW0_DICT6 Length = 462 Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 55/296 (18%), Positives = 101/296 (34%), Gaps = 46/296 (15%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE 83 +EI L L ++W+ + V+ + L+ S + P+ + + V+ P+ Sbjct: 8 EDEISLAELFYIIWKRRVLVIILFIISVLIALVYSLLAPKIYEAKTVILIPQQSGTSS-- 65 Query: 84 KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHR 143 L+ L + I I + + +S S E K D Sbjct: 66 TLSALLQNLPIPIGITSSTPSANMVAILKSRSAAE---------YVFKKLKLDDYFKAKT 116 Query: 144 AIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKES 203 AL + M ++ ++K++ T++ A + A + + Y+ Sbjct: 117 YEDALKQLMDSIKVTTNEKENT------ITITAEAKDPKLAADIANTYV----------- 159 Query: 204 LENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAV 263 + + K +TK L+ I+R+ LD A +K+ N Sbjct: 160 --EALSTINASLGVYTAK------RTKEFLEKQIERVKKDLDQAEN-KLKEFQEKNLIFS 210 Query: 264 KDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFT 319 DD +I D + KLE EK +T + L+ + E L K VN Sbjct: 211 IDDEAKAIV---DAL-AKLESEKQMTAIT-----LKVSKDNFENLKKELVNQQRIQ 257 >UniRef50_C5S436 Putative uncharacterized protein n=2 Tax=Actinobacillus minor RepID=C5S436_9PAST Length = 256 Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 72/213 (33%), Gaps = 29/213 (13%) Query: 36 LWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLD 95 ++R + V A G + P +W ++A P+ + F+ ++ D Sbjct: 1 MFRKLFATILVTAVGAGVGFAGAKFQPTQWQASAQFEHPQTAELGNYLTLFSTYHLISGD 60 Query: 96 IKID---------RTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIV 146 ++ F K QS L ++L +S V Q K I E + + + Sbjct: 61 TAAADISKMEAKAAEASYTEFKKNIQSQEKLAQFLTNSALVKAQAKIEGISEQAMVQQLS 120 Query: 147 ALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLEN 206 + + TLS T+ +++EA + Y+ Y++T + Sbjct: 121 KHFQFTSGNNQPD-------------TLSLTSFSTQEADNLFGEYLRYVNTQARNTLNND 167 Query: 207 VRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQR 239 + K K Q + ++D + + Sbjct: 168 LIAKW-------KSLFQQVKSAADAKIDVSWEN 193 >UniRef50_B6BQX7 Chain length determinant protein n=1 Tax=Candidatus Pelagibacter sp. HTCC7211 RepID=B6BQX7_9RICK Length = 352 Score = 61.3 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 44/316 (13%), Positives = 114/316 (36%), Gaps = 16/316 (5%) Query: 14 FPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTP 73 NN+I+ + ++ ++W K + + F G+ + +P + + + P Sbjct: 1 MKKKIPLYRYNNDIEFIEILQIIWNGKVKIFLITIIFTLIGVGYTSKIPNSFKLSITIQP 60 Query: 74 PEPVQWQEL----EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL----LEEYLRSSP 125 + + + + + L + + +++ ++E+L Sbjct: 61 SKNSNFVKFIPINQMLISSLLNNSTQKHFTNQQLEINQELQVNEITMIDRFVKEFLDFEE 120 Query: 126 YVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQ 185 ++ + IDE L I + +K + ++ DE + + + SEE Sbjct: 121 FINVLESNSYIDENTLQTEIERQRQMLKYSKLLSLQRLDETNKDLGYVIKLIWGDSEEGL 180 Query: 186 TVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLD 245 +LS ++ + K +++ L+IK + K + RI + A + LN + + Sbjct: 181 KILSETLNLTKINLHKSVFKDLDYFLKIK-KEIKISENESRILFLTEQSAIAKELNIAEN 239 Query: 246 IANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLV 305 + + P V + G I++++ + + +++ + + Sbjct: 240 QVDTVNL--PQDKIAVNVTTNNIGYYLQGYKAIDKEISLIENRE-----YKDIKKIKERI 292 Query: 306 EQLTKAHVNDVNFTPF 321 E L +N V++ F Sbjct: 293 EILKTEKINLVDYNLF 308 >UniRef50_C5BSK8 Chain length determinant protein n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BSK8_TERTT Length = 293 Score = 61.0 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 58/351 (16%), Positives = 116/351 (33%), Gaps = 72/351 (20%) Query: 29 LLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVV-TPPEPVQWQELEKSFT 87 ++ L LW K ++ + F G+L S LP + S V + + + Sbjct: 1 MIKLWESLWSGKFWLLGITALFILCGVLFSLSLPNMYESKGVYGISQDDGVAKNMSGQLG 60 Query: 88 KLRVLD-LDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIV 146 L + +++ N + QS +E +R+ + + K + + + Sbjct: 61 GLAAIAGINLGAGGQNKINHAVVLGQSWPFWDELIRTHN-LKPLVFGVKEWDRARDKFVW 119 Query: 147 A----LSEKMKAVDDNASKKKDEPSLYTSWT-------LSFTAPTSEEAQTVLSGYIDYI 195 L ++ K + S K+ EPS Y + + F A T + V Y ++ Sbjct: 120 DEDIYLVDEQKWIRKPPSGKEAEPSSYEVFDKIIDFVEIKFDASTGLLSIKV-KHYSPHV 178 Query: 196 STLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKP 255 + V+ +E + +DR K + NI L +D A +K Sbjct: 179 AKEWVEMIVEKLNGDF------------RDRDIVKAEK--NIGYLQEKIDETKIAELKTV 224 Query: 256 VYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVND 315 Y+ +A + K + V + + + Sbjct: 225 FYNMVEA----------------QTKTLMLARVDEDYLVEPVIMP--------------- 253 Query: 316 VNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASR 366 + PV P + +IV+L A++GGM + + ++ + R Sbjct: 254 ---------MVAESPV---SPVRKLIVVLFAVVGGMFSLLFLFVKNIFSKR 292 >UniRef50_C9PY96 Chain length determinant protein n=1 Tax=Prevotella sp. oral taxon 472 str. F0295 RepID=C9PY96_9BACT Length = 350 Score = 60.6 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 56/356 (15%), Positives = 125/356 (35%), Gaps = 23/356 (6%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ 78 + + + ++IDL+ + LW+ K+ G +++F +P+ + + ++ P Sbjct: 1 MENNTKDKIDLVAITKTLWKNKRLFGLSCGVAFVIGAVVAFSIPKTYQTKVILAPEVSSG 60 Query: 79 WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 E ++ +++ + ++ + + + +L S V + K+ E Sbjct: 61 SSMSESLSDIASMMGVNLGKGGSSVDAIYPEIYPQIIKSTPFLTSMFNVKVTSLDGKVKE 120 Query: 139 LDLHRAIVALSE--KMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 196 + L+ +++ + ++ L +EE + +L + I+ Sbjct: 121 MPLYNYLLSYQKMPWWDSILQGIIGLFSSKGLAGREVKVNNFHLTEEQEGILHQVENMIT 180 Query: 197 TLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYS----------LDI 246 V + + + + LA D ++TK Q R + Sbjct: 181 CNV-DKKTNIITISVTAQDALISASLA-DTVQTKMQQYVTNYRTKKARNDLAYSQKLFSE 238 Query: 247 ANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVE 306 A A IK D I + +LE E +L + N+ Sbjct: 239 AKAQYIK--AQQMFGHYSDANTDLILQSFKAKQDELENE------MQLRYNIYNQTSQQM 290 Query: 307 QLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYA 362 Q+ +A V + F ++P+KKDGP + IV+ ++ VL++ A Sbjct: 291 QMARAKVQE-RTPAFTQIQPATVPLKKDGPKRMTIVLAFMFFAFVLTSIHVLIQDA 345 >UniRef50_D1B3W3 Lipopolysaccharide biosynthesis protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B3W3_SULD5 Length = 297 Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 47/348 (13%), Positives = 102/348 (29%), Gaps = 60/348 (17%) Query: 22 PSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQE 81 P +EIDL L + R KK ++ + + S + + A++ Sbjct: 9 PHEDEIDLRELFRTIIRYKKFIVVITVCVTLFAAVYSVLKTPIYEVKAILEIGFFTNTNT 68 Query: 82 LEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDL 141 + T + +D K +K Sbjct: 69 NTNTNTNTNTNTNTFLESPANLIQRLELNY----------------IDNQKGSKETSFLS 112 Query: 142 HRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVK 201 ++ + + + A ++ + + Q V+ Y+ + + Sbjct: 113 KALLIKGTNNLVELVIEAQSNEEGLKKLNAIV----DEVKLKHQKVIEAYLKQMHIKISN 168 Query: 202 ESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQ 261 Q +KE+L+ ++ K N + ++ L P + Sbjct: 169 -------------IQAQKEELSLEKEKLSNFISNKTLMVDQILK-------DNPAVAA-- 206 Query: 262 AVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPF 321 +SI L +E + EL ++ + L + N Sbjct: 207 ------IYSIELNNKSLE-----------LTELKNKIYTLNNQLSDLE-LLIAPSNVKET 248 Query: 322 KYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQD 369 + + + K P KA+IV++S++ G +++ V L S K + Sbjct: 249 SFLGNITKSDKPVKPKKALIVLVSSITGFILSIFMVFLFEMFRSPKNE 296 >UniRef50_C4FKG4 Lipopolysaccharide biosynthesis protein (Fragment) n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FKG4_9AQUI Length = 176 Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 61/165 (36%), Gaps = 12/165 (7%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQEL 82 +EIDL L ++W + + +VF +ISFILP+ +TS +V+ P Sbjct: 14 QEDEIDLFELFHIIWNNRFFIAKIVFGITILTAIISFILPKTYTSESVIVPVTKSSSGSG 73 Query: 83 EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLH 142 + + L + + S +L E ++ + + LK+ K + Sbjct: 74 LSAIAAMAGLPVGGDQATANV----VAVLNSNTLRERVVKDLNLLDEILKDKK---NEFK 126 Query: 143 RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTV 187 R ++K KK+ + + ++AQ + Sbjct: 127 RPYQEAGIRLKNNIKINEDKKN-----GTIKIEVDWKDPDKAQKI 166 >UniRef50_Q2CAF1 Putative uncharacterized protein n=2 Tax=Rhodobacteraceae RepID=Q2CAF1_9RHOB Length = 719 Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 69/445 (15%), Positives = 132/445 (29%), Gaps = 89/445 (20%) Query: 9 GSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISF-ILPQKWTS 67 + A P P S +++EIDLL L+ LWR K ++ AG+ + + K+ + Sbjct: 14 VTPAPAP-VPANSVADDEIDLLALLRTLWRGKWLILLAALLALAAGVYYATQVAEPKYAA 72 Query: 68 -AAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKK-------------FQS 113 A+ Q + E + + D + + + + + F + Sbjct: 73 TTAIALQVNNPQVVDFESVMSGVSTDDTSMNTEVEVIRSRGLLEQLVDRLDLLEDPAFNT 132 Query: 114 VSLLEEYLRSSPYVMDQLKEAKID-----------------------ELDLHRAIVALSE 150 EE L + + EA + I+ + Sbjct: 133 SLRPEEGLSLTALLAPLTGEAPDAAAASGEAAALNATVDQVRDALGASVQRDTFILNIRA 192 Query: 151 KMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYI------------------ 192 +A LY ++ +EEA LS + Sbjct: 193 TTGDPQKSALIANTLAELYIEDQIAVKFQGTEEAVAWLSDRVTALEDELRQKEDQIAALR 252 Query: 193 ---DYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANA 249 + +S ++ ++ + T+ E++ + + + +L +AN Sbjct: 253 AESELVSAEALEGLNRQAKDVRDRLTELEQQAAREAARLAELEAAIERGDTAEALALAND 312 Query: 250 AGIKKPVYS-NGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVE-- 306 A +++ F + ++ + A L L Q E Sbjct: 313 ATLRQLAQRVEAGDEAAGELFERRAETVLARARNDLARTEAQAASLETSLARLQTQTEAQ 372 Query: 307 --QLTKAHVNDVNFTPFKYQ------------------------LSPSLPVKKDGPGKAI 340 +L + + + LS + P + P KA Sbjct: 373 SAELAQLQQLEREAQATRTLYETFLARLKETTVQRGLQQADARILSYATPGEMVAPRKAR 432 Query: 341 IVILSALIGGMVACGGVLLRYAMAS 365 I L+ ++G MV G VLLR AM S Sbjct: 433 IAALALILGLMVGTGIVLLREAMRS 457 >UniRef50_Q1ITA8 Lipopolysaccharide biosynthesis n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ITA8_ACIBL Length = 428 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 51/371 (13%), Positives = 113/371 (30%), Gaps = 59/371 (15%) Query: 37 WRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDI 96 W + ++ ++F++P+++ S A + PPE + + R L ++ Sbjct: 30 WERRGAIVKAAVIGVIVSTTLAFVIPKQYESTARIMPPEGGMSSAIMAALAS-RALPGNL 88 Query: 97 KIDRTEAFN------LFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSE 150 F +F+ QS S+ E + K D L ++E Sbjct: 89 GAIAGSLFGFQSTSTVFVNLLQSRSVTERVVDRFDLQKVYRSRYKQDALKKLHRRTEIAE 148 Query: 151 KMKAVDDNASKKKDE----------------------PSLYTSWTLSFTAPTSEEAQTVL 188 K + + S F A + L Sbjct: 149 DRKTGIITITVADTDRRRARDMAQTYLDELNSLVTRVNSSAAGREREFIAQRLVTVKRDL 208 Query: 189 SGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLD-------------- 234 +S K + +V+ + KL + I +++L Sbjct: 209 DDAERQLSVFSTKNATLDVK-EQTRAMVEATAKLEGELIIARSELSSLDQIYGPENVRVR 267 Query: 235 ---ANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDV 291 A + +L + L A +G+ + + + + + + Sbjct: 268 AGRARVGQLEHELKNATGSGVP-------SDITESTPYPPLRALPTLGVQWADLYRRVKL 320 Query: 292 AELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGM 351 E EL ++Y + ++ +A P+ P +K P + +I+++ L+ + Sbjct: 321 QETVFELLTQEYELARIEEAKA----IPSISVIDPPNWPERKSFPPRLVIMLVGTLLS-V 375 Query: 352 VACGGVLLRYA 362 + V++R A Sbjct: 376 LGTFFVIVRKA 386 >UniRef50_B5JNI6 Chain length determinant protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNI6_9BACT Length = 333 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 47/358 (13%), Positives = 109/358 (30%), Gaps = 82/358 (22%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ----W 79 +E+ L++L +++W+ K + F G+ + + + + A + P + Sbjct: 21 EDELSLIDLWNIVWKRKWPWLVFGPLFGIFGVFYALNQTEIYRAEATLAPNSEEKSGGGL 80 Query: 80 QELEKSFTKL---RVLDLDIKIDRTEAF-----NLFIKKFQSVSLLEEYLRSSPYVMDQL 131 L F L L+L A F+ F + + L + + Sbjct: 81 SALAGQFGGLASMAGLNLGGGGSTETAIATLKSRQFLTPFITTETSLKALFPKEWDEETK 140 Query: 132 KEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGY 191 E E + N+ K ++ TL+ P + A + Sbjct: 141 AWTVAKERRNDSNTPTDLEAYEFFTKNSLKVSEDKK-SGLVTLAVELPDPKLAAEWTNQL 199 Query: 192 IDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAG 251 + +++ + +++ + + E + ++L+ D + + +L G Sbjct: 200 VGKLNSHLRQQA----KIESERNLAYLNDQLS----------DTRVLEIREAL-----YG 240 Query: 252 IKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKA 311 + + N +++ V D A + ELR R Sbjct: 241 LIENQTKNAMLANAKEEYAF---------------KVIDPAVV-PELRVR---------- 274 Query: 312 HVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQD 369 P +++IVI S ++GG + + + + K+ Sbjct: 275 ------------------------PKRSLIVIASGMLGGFFGLFLCFVFHFVDTAKKT 308 >UniRef50_Q1YH82 Possible exopolysaccharide biosynthesis/transport protein n=1 Tax=Aurantimonas manganoxydans SI85-9A1 RepID=Q1YH82_MOBAS Length = 687 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 44/314 (14%), Positives = 119/314 (37%), Gaps = 37/314 (11%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNE----IDLLNLISVLWRAKKTVMAVVFAFACAGLL 56 M+ + + +A + P + ID +++ +W A++ ++ G+ Sbjct: 18 MAMFSSETNPNAPYAARPSGPQMQDSNGSLIDPVHVFQSVWSARRLIILTTIFGLLLGVA 77 Query: 57 ISFILPQKWTSAAVVTPPEPVQWQELEKSFTK--------LRVLDLDIK-IDRTEAFNLF 107 + +P+K+T+ + + +P + ++ T L +++ I I+ + Sbjct: 78 FALSMPKKYTAYSQIFA-DPRDIKVVQNEVTPNGLPTEATLALIESQIAVINSNDLMAKI 136 Query: 108 IKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPS 167 ++ ++ E+ ++ L+ + + + M+ + + +D S Sbjct: 137 VEAAD-LTSDPEFNGQGESLLPSLESLGLTSPTIASTNERFLQTMENLREATGVSRDAKS 195 Query: 168 LYTSWTLSFTAP--TSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQD 225 + +++ +P ++E ++ V + +ID+++ V ++ N L + +EK++ Sbjct: 196 FILNISVTTESPEKSAELSRLVANTFIDHLAE-VQSDTAGRATNALSSRLTELREKVSAA 254 Query: 226 RIKTKNQLDAN--------------IQRLNYSLD--IANAAGIKKPVYSNGQAVKDD--- 266 ++ N I R+N L AN ++ +A DD Sbjct: 255 EQAVEDYKSENELVGVGGQLVDDSYILRINDELSRGRANVTALRVKAEQMSKASVDDVVE 314 Query: 267 PDFSISLGADGIER 280 F L ++ + R Sbjct: 315 GAFPEELTSEALTR 328 >UniRef50_C7LVW8 Capsular exopolysaccharide family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LVW8_DESBD Length = 779 Score = 59.0 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 56/357 (15%), Positives = 121/357 (33%), Gaps = 50/357 (14%) Query: 7 KQGSDAHFPDYPLASP-SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKW 65 + H ++P + P + +EIDL + + VL R K + V+FA +++ + + Sbjct: 23 PSQAVVHASEFPASFPQAEDEIDLRDCLEVLVRRKWLIGGVLFAVFVTTFIVTLAMTPIY 82 Query: 66 TSAAV----VTPPEP----------VQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKF 111 + + PP+ Q +E + TKL D + +F Sbjct: 83 KATGKLEFNLQPPKVTTFEDMLVPQTQTREFMNTQTKLLTSDSLAWRVIETLDLVHNPRF 142 Query: 112 QSVSLLE-----EYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEP 166 + E L ++ + D R +K DN K + Sbjct: 143 NTEITAEGEDSGGILSDLRRMLTTMPGQGEDLDAQVREAEVQQRLLKVFLDNLEIKAERD 202 Query: 167 SLYTSWTLSFTAPTSEEAQTVLSGYI-DYISTLVVKESLENVRNKLEIKTQFEKEKLAQD 225 + + L+F++P A+ V++ +I +I+ + K+ E+L + Sbjct: 203 TTILN--LAFSSPDPALARDVVNTFIGSFIAWQLDKKI---------GAAGVANEQLRKQ 251 Query: 226 RIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSIS--------LGADG 277 + +L+ + +N A AGI K + + + LG + Sbjct: 252 VEVARIRLEKSEAEMN---AFAQKAGIVSLDSRMNLVYKQLEEINSALALAHAQRLGREA 308 Query: 278 IERKL-EIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKK 333 ++ + E+ + + N ++ + QL + + + P P + Sbjct: 309 LDAQAREVGVSALPMVIDNPLIQELRQQYVQLESQYEDKL------VVFKPDYPEAR 359 >UniRef50_D2QRK9 Lipopolysaccharide biosynthesis protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QRK9_9SPHI Length = 362 Score = 58.3 bits (139), Expect = 5e-07, Method: Composition-based stats. Identities = 47/358 (13%), Positives = 100/358 (27%), Gaps = 25/358 (6%) Query: 26 EIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKS 85 EI L +++ L +++ V+ G L +F P +TS V P + L Sbjct: 18 EIRLSDIVQFLKDSRRRVLLGSIVGLIIGALYAFSKPNVYTSQVTVMPELQAKAGGLGGL 77 Query: 86 FTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAI 145 + +D+ + L E ++ L I Sbjct: 78 GGLAGLAGIDLNSATGGTMDAIRPDLYPDVLKSIPFALYLLSQPVYSEKLQAKMTLQEFI 137 Query: 146 VALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLE 205 ++ K E S ++E + ++ I + + Sbjct: 138 NRVNRSWIKDLFAGGSKDAENRKLDPKNFSKAIQITKEQEDLVK--IVQTNMSAAYDKKT 195 Query: 206 NVRN--------KLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVY 257 + + + + I T A Q + ++ A G + Sbjct: 196 GILTLAATESDPVVAATEVRLSLEYLTNYIVTYRTEKARKQVAFLTKRVSEAKGRYQSAE 255 Query: 258 SNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVN 317 + +D A E++L+ L + E + + Sbjct: 256 YALSSYRDRNRSLFLQTAKLEEQRLQA-----------DYLLEQSVYNELSKQLEQAKIK 304 Query: 318 FT----PFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAM 371 FK P +P++K P + I++ A+ G V +L + + + + Sbjct: 305 VQEETPVFKVLEPPVVPLRKSAPKRTFIMLGFAIAGVFVTLIILLTKRLLHTNSTSVL 362 >UniRef50_D0MG08 Lipopolysaccharide biosynthesis protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MG08_RHOM4 Length = 403 Score = 57.9 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 50/368 (13%), Positives = 109/368 (29%), Gaps = 57/368 (15%) Query: 43 VMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSF--TKLRVLDLDIKIDR 100 + V A ++ S +LP + + A V PP L VL + Sbjct: 28 IAGVTAVAALGAVIFSLLLPNWYRATARVLPPASGGLSPLASQLLGNLPGVLGGVLGGSN 87 Query: 101 TEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNAS 160 T + ++ S ++ E + V E +E AI LS+ + D Sbjct: 88 TAGYERYLSILSSRTMYERLVDRFNLVSVYGLE--DEEHPQEAAIEELSDNVSFDVDPD- 144 Query: 161 KKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKE 220 + +S + A + + ++ ++ + ++ R Q+ + Sbjct: 145 --------FEYLEISVLDRDPQRAAEMANFMVEELNRINADLMTQSARRY----RQYVER 192 Query: 221 KLAQDRIKTKNQLDA-NIQRLNYSL--DIANAAGIKKPVYSNGQAVKDDPDFSISL---- 273 + + + + LDA Y L A A G + V + +L Sbjct: 193 RYHEALARLDSVLDAQEAFHKRYGLFDLEAQARGFLEYVATLRAEALQTEMQYEALRAQF 252 Query: 274 --------------------GADGIERKLEIE----KAVTDVAELNGELRNRQYLVEQLT 309 + +E + + + + +L + L ++ Sbjct: 253 GDDNPQVRVLADMKATAERRYREALEGQERLLPVPQQEIPSALRQYFDLERERLLQTRIL 312 Query: 310 KAHV---------NDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR 360 + + + PVKK P +++IV+ L ++ VL Sbjct: 313 EVLAPLYEQARFEEERRVEAVQVVDPAVPPVKKAWPRRSLIVLGITLAAFALSVLFVLAH 372 Query: 361 YAMASRKQ 368 +++ Sbjct: 373 GWWQEQRE 380 >UniRef50_C5S677 Putative uncharacterized protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S677_CHRVI Length = 378 Score = 57.9 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 55/336 (16%), Positives = 107/336 (31%), Gaps = 60/336 (17%) Query: 33 ISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVV------TPPEPVQWQELEKSF 86 +++L R K + +L+S ++P ++S AV+ PP+P + + + Sbjct: 12 LAILERRKWQAIVPASILFTIAVLVSLLIPPSYSSTAVMLAERLEIPPDPARTTVMRHAE 71 Query: 87 TKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIV 146 +LR++ ++ + L + D + +D Sbjct: 72 QRLRLIG---------------QQVMTAGHLRTLIERYDLYSDIRRRESLDMAVAEMRQH 116 Query: 147 ALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLEN 206 + ++A + +WTLSF +++ + Sbjct: 117 ITIDTIRAEILDMRTGHTARQANVTWTLSFEDGSAK--------------------ITRD 156 Query: 207 VRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDD 266 V N L E + + L A +RL A +K + + + D Sbjct: 157 VTNALASLFLSENPEQRTTANPAADSLHAAAERLA-----AEIDALKTRLATVERQRVDQ 211 Query: 267 PDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLS 326 S +L D + + Q L QL ++ D F Sbjct: 212 HTIS-ALRRDYVNAMTK------------YRELREQSLQTQLVQSLERDRQGERFSLLEP 258 Query: 327 PSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYA 362 P P + P + +I++L ++ G G VLLR A Sbjct: 259 PGAPETSNTPNRLLILVLGFVLAGAGGVG-VLLRLA 293 >UniRef50_B6B6U1 Succinoglycan biosynthesis transport protein ExoP, putative n=2 Tax=Rhodobacterales RepID=B6B6U1_9RHOB Length = 714 Score = 57.9 bits (138), Expect = 6e-07, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 4/92 (4%) Query: 4 LNIKQGSDAHFPDYPLASPSNNE--IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFIL 61 + P + + +E IDL L + LWR K ++ V A G + +F+ Sbjct: 2 KQTPLNEASFPVQRPAPAETPDEDVIDLGALFATLWRGKWIMLLVTAAAIFLGGIYAFVA 61 Query: 62 P-QKWTSAAVV-TPPEPVQWQELEKSFTKLRV 91 ++TS+AVV + +L + L Sbjct: 62 AVPQYTSSAVVMLETKQESVVDLRSVVSGLSG 93 Score = 43.2 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 46/315 (14%), Positives = 98/315 (31%), Gaps = 31/315 (9%) Query: 82 LEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDL 141 ++ L L + E I+ +L + + + E Sbjct: 143 VKSQIKSLLGLQKPAEEMPEELVEQLIRDSVVSTLQSKISVRNVPYTLVFEVTAETESAR 202 Query: 142 HRAIVALSEKMKAVDDNASKKKDEPSLYTSWT------LSFTAPTSEEAQTVLSGYIDYI 195 A++A + + + K D T+W L T+E + + Sbjct: 203 KSALIADTIVDLYILNQIEVKFDATEQATTWLTGRVAELKAELETAEAKANEFNAGTALV 262 Query: 196 S---TLVVKESLENVRNKLEIKTQFEK---------EKLAQDRIKTKNQLDANIQRLNYS 243 S + L+++R ++ + E+ + + D +QRL Sbjct: 263 SPEALQAQEVQLKDLRERIALAKTAEETAQVRYGALHAAESREDQAEISQDRQLQRLLAQ 322 Query: 244 LDIA------NAAGIKKPVYSNGQAVKDDPDFSISLGADG-IERKL--EIEKAVTDVAEL 294 D A + A ++ + A + + ++ + R+ + E +T Sbjct: 323 ADTAAGGAAFDTAFQRQLARAALDARRATQQLQTLVQSEAELSRQTARQSEDLITLQQLT 382 Query: 295 NGELRNRQYLVEQLTKAHVND----VNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGG 350 R LT+ + + +P++ P K++I+ +S ++G Sbjct: 383 REAEAVRLLYEYFLTRLKETSAQEGIQKADSRLLSRAVIPLRPSAPKKSLILAMSGILGL 442 Query: 351 MVACGGVLLRYAMAS 365 MV G VLL A Sbjct: 443 MVGAGIVLLMEARRR 457 >UniRef50_A4EII1 Protein-tyrosine kinase n=1 Tax=Roseobacter sp. CCS2 RepID=A4EII1_9RHOB Length = 654 Score = 57.9 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 48/374 (12%), Positives = 116/374 (31%), Gaps = 46/374 (12%) Query: 31 NLISVLWRAKKTVMAVVFAFACAGLLISF-ILPQKWTSAAVV---TPPEPVQWQELEKSF 86 ++ +W K + V SF + ++ + A + T EP + + + Sbjct: 30 AMLKAVWHGKWLIFWVTVLMITLSGYYSFRVASPQYVATATLQLDTAAEPGGSLQQQPTV 89 Query: 87 TKLRVLDLDIKIDRTEAFNLFIKKFQ--SVSLLEEYLR--------------------SS 124 + + + I + S L YL ++ Sbjct: 90 DEAALNTKVALVTSDAVLTQVIAELDLLSDPELNRYLTAQSPLSLRNLRTQVRHLLAGTT 149 Query: 125 PYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSL----------YTSWTL 174 DQ +L ++ + + D Y + T Sbjct: 150 TQTPDQAAVHDKTIQNLRAKLMVSRRPNTYILHIVVRSSDPEKAALLANTTAASYLAHTQ 209 Query: 175 SFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKT--KNQ 232 + A +EAQ L + + + + + + + + + L + +Q Sbjct: 210 TLDAQARDEAQVWLQSRVTTLRSQLETQEM-QIAALIATAQLQQDRGLDTLSAQVLGADQ 268 Query: 233 LDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKA----- 287 + L+IA+ +G + Q D + + + +L + A Sbjct: 269 NLTEARNTLALLEIASDSGSARNRAEIAQMHNKISDIASL--KERLSAQLSAQSAGLAQL 326 Query: 288 VTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSAL 347 + + + Q + +L + + TP +++P+ GP K +I+ ++AL Sbjct: 327 HQLQLQTDATRQLYQMFLGRLHENRMQQGLGTPQSLRVAPATHGVYIGPRKTLILTIAAL 386 Query: 348 IGGMVACGGVLLRY 361 +G + +++R+ Sbjct: 387 LGIAIGVMVIVVRH 400 >UniRef50_A7JRK0 Lipopolysaccharide chain length determinant protein n=2 Tax=Mannheimia haemolytica RepID=A7JRK0_PASHA Length = 270 Score = 57.5 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 46/267 (17%), Positives = 88/267 (32%), Gaps = 31/267 (11%) Query: 33 ISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL 92 + L+ ++ A AG +S+ P+KW A P + L Sbjct: 1 MKTLFYRLLVLILFAAIGAGAGYGLSYTQPEKWKVTAQFEQPTIPDLGNYYSLLSTYHFL 60 Query: 93 DLDIKID---------RTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHR 143 + + + + + F + S LL+ YL + V + + AK + Sbjct: 61 NSNSQEANSQTAQQQASEQVYAEFKRNLTSADLLQAYLLQTEAVKLKAQVAKKSPAVVAA 120 Query: 144 AIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKES 203 +V K + +A +S A +EEAQ +L+ +I ++T + Sbjct: 121 ELVEQFRFEKDMATSAD------------NVSLIAENAEEAQKLLADFIPLVNTQARDKL 168 Query: 204 LENVRNKLEIKTQFEKEKLAQDRI--------KTKNQLDANIQRLNYSLDIANAAGIKKP 255 ++ K ++ Q K + K Q+ ++Q L+ L +K P Sbjct: 169 NADLIAKWKVLFQQIKTASELNINGKQGSQDWAAKLQMMRSVQPLDNQLTAYRL--VKSP 226 Query: 256 VYSNGQAVKDDPDFSISLGADGIERKL 282 D P + G + L Sbjct: 227 SVPLKSESPDPPILADDWGIKWLTAGL 253 >UniRef50_A6TJR1 Lipopolysaccharide biosynthesis protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TJR1_ALKMQ Length = 398 Score = 57.5 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 54/398 (13%), Positives = 123/398 (30%), Gaps = 52/398 (13%) Query: 25 NEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI-LPQKWTSAAVVTPPEPVQ-WQEL 82 EI L LI L + KK ++ + L SF L + + V+ + Q Sbjct: 2 EEISLRELIETLLKQKKLIIGITMIAVLTTGLFSFFMLEPVYETRMVLMASNFTERLQPN 61 Query: 83 EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLH 142 + S + + + + + ++ + ++ + D E + L Sbjct: 62 QLSGNGVEGMLESLSQYPAMTLDTYRQQVTAPRVMRATIEELGLEEDYDVERLARAISLE 121 Query: 143 RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYI---DYISTLV 199 +K + K + + F + ++E + S Y+ + Sbjct: 122 TLQNTNLITIKMQHGDPEKAALIVNTVGEKFVEFVSEKAQEHASQSSQYVVSQMEVEEAQ 181 Query: 200 VKESLENVRNKLEIKTQFEKEKLAQDRIKTK--------NQLDANIQRLNYSLDIANAAG 251 + ++L +R L + ++ D ++ L+ L ++ +A A G Sbjct: 182 LDDALVELREFLSQPRGVSELQMELDARLSQATSFKTQLTDLEIREPALQSAIQVAQAEG 241 Query: 252 IKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLT-- 309 I+L + K+E+ + +++ ++ Q +E+L Sbjct: 242 NTNSQIMINDNAGSQQ---ITLESTETLLKIELAEVQSNIQSFRTQITEIQDEIEELQVE 298 Query: 310 ---------------KAHVNDVNFTPFKY-----------------QLSPSLP-VKKDGP 336 N+ + KY +S + P GP Sbjct: 299 LQDKKHQERLINQRVNIAENNYDAFVKKYEELRVAESSQIGDASITVISRAFPTTTPIGP 358 Query: 337 GKAIIVILSALIGGMVACGGV-LLRYAMASRKQDAMMA 373 K + V ++ ++G M+ + Y S K+ + Sbjct: 359 RKTLNVAIAGVLGVMIGVFAAFFIEYWKTSGKEQEALE 396 >UniRef50_B2PVB4 Putative uncharacterized protein n=3 Tax=Providencia RepID=B2PVB4_PROST Length = 693 Score = 57.1 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 45/299 (15%), Positives = 104/299 (34%), Gaps = 34/299 (11%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQW 79 +S +++EIDLL L VL + + F G SF+ + + A + + Q Sbjct: 7 SSAASDEIDLLALFKVLKSSYLKIGFFTLFFIVIGAAYSFLATPIYQANATLQYDKMSQV 66 Query: 80 QELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLE-EYLRSSPYVMDQLKEAKIDE 138 L++ + F S + E E ++S + + + +D Sbjct: 67 SLLDQMSDVMP----------------FANNNNSQADSEIEVIKSRMVLGKTVADLNLDI 110 Query: 139 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 198 KA + E + +++ + Y +I Sbjct: 111 HTAPAGFFDRLWGDKASVAISLYSLPEHLIGEPAIVTYLGE---------NRYALHIDNQ 161 Query: 199 VVKESLENV--RNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIA---NAAGIK 253 + + + ++++ + ++ Q+ +KN + I+ L +L IA + GI Sbjct: 162 TFEGKVGELLKQDEISLLVSSINAEVGQEFTLSKNARYSTIENLRNTLTIAEVGKSTGII 221 Query: 254 KPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTD--VAELNGELRNRQYLVEQLTK 310 + G ++ S+ + +++ E +K VT+ + L+ L + ++ Sbjct: 222 N-LAIKGADKAENVQILNSIIQNYVDQNTERKKEVTNNTLLFLDEYLPKVKTKLDNYEN 279 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 48/292 (16%), Positives = 107/292 (36%), Gaps = 13/292 (4%) Query: 89 LRVLDLDIKIDRTEAF--NLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRA-- 144 L+ ++ + + A F + E LR++ + + K I L + A Sbjct: 171 LKQDEISLLVSSINAEVGQEFTLSKNARYSTIENLRNTLTIAEVGKSTGIINLAIKGADK 230 Query: 145 IVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESL 204 + + + + + T+ TL F + +T L Y + ++ ++ Sbjct: 231 AENVQILNSIIQNYVDQNTERKKEVTNNTLLFLDEYLPKVKTKLDNYENQLN--AFRKKN 288 Query: 205 ENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVK 264 E++ LE K+ + ++++ + IQ+L A + + K K Sbjct: 289 ESIDLSLEAKSALDSALQVEEKLNELTFKEVEIQQLYTRNHPAYQSLLDK--RQQLLREK 346 Query: 265 DDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQ 324 + +I + ++ + + + V + +L +Q + L DV Sbjct: 347 EKISKNIQKLPNTQQQIVRLTRDVESEQAIYNQLVAKQQELSVLNSGITADVRII----D 402 Query: 325 LSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADHL 376 + S P P K +IV+L+ ++G +V C V+ R ++ + D L Sbjct: 403 SAESQP-NAIAPKKTLIVVLATILGFIVGCAYVIAREFFNNKIKGTEDIDAL 453 >UniRef50_A3WQF3 Putative tyrosine-protein kinase Wzc (Fragment) n=1 Tax=Idiomarina baltica OS145 RepID=A3WQF3_9GAMM Length = 290 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 10 SDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAA 69 S+ + P + + +EIDL L+ VL AK ++ + F F G+ + + + + A Sbjct: 2 SERNPPSNTSHNNNEDEIDLRRLVGVLLDAKWLIIGITFLFMLGGVAYALLATPIYKADA 61 Query: 70 VV 71 ++ Sbjct: 62 LL 63 >UniRef50_B3C5C8 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3C5C8_9BACE Length = 380 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 62/393 (15%), Positives = 135/393 (34%), Gaps = 33/393 (8%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 M+S I + D P S EI+LL L+ +W ++K ++ + A GL+I F Sbjct: 1 MNSNTINERKDMRPP-----SSQEQEINLLELVKKVWDSRKLILRMCGIGAIVGLVIGFS 55 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 P+++T++ ++ P + + + + +L I + +F + + + Sbjct: 56 TPKEYTASTLIAPESRRAY-PGKSALVNMEDDNLSSSITGEKD-AIFPVLYPEIINSTPF 113 Query: 121 L---------RSSPYVMDQLKEAKIDELDLH--RAIVALSEKMKAVDDNASK-KKDEPSL 168 L V L + + R I ++ K+ + K + +E S Sbjct: 114 LIRLFDIKVREQKDSVSIPLSQYLKERQKAPWWRIITSVPFKLTGWIVSLFKDESNEDSG 173 Query: 169 YTSWTLSFTAPTSEEAQTVLSGYI-DYISTLVVKE-----SLENVRNKLEIKTQFEKEKL 222 T + + ++G I I+ V K+ +++ L T + ++ Sbjct: 174 QTGTKMGINPFRLTRKEAGMAGAIASRINIGVDKKKRTITIFVTMQDPLVAATVADIVRV 233 Query: 223 AQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQA-VKDDPDFSISLGADGIERK 281 T+ + + L Y+ ++ A + D + L + + Sbjct: 234 YLKEYITEYRTGKARKFLKYTEELRKEAQEEYYSAQEKYTRYADVNRGLVKLTSRAELVR 293 Query: 282 LEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAII 341 L E + N + Q + ++ K + +P+K P K I Sbjct: 294 LRNEMKLAQ-TTYNQTKQLVQAAMARVEKIRP------VYAVIQPVVVPLKPSKPRKMTI 346 Query: 342 VILSALIGGMVACGGVLLRYAMASRKQDAMMAD 374 +++ + G + VL + +AD Sbjct: 347 LVMYVFLSGAGSLVWVLFAKGFLKDLKKRRVAD 379 >UniRef50_Q7UF18 Similar to type 8 capsule gene Cap8B n=1 Tax=Rhodopirellula baltica RepID=Q7UF18_RHOBA Length = 785 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 82/234 (35%), Gaps = 34/234 (14%) Query: 30 LNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKL 89 L+++ +L R + + + A AG+ + + S A V + + L Sbjct: 27 LDVLQILSRQRWLIAFLSIAGLAAGVAYALNAQVWYESNAKVL---------INQKSAGL 77 Query: 90 RVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALS 149 + + ++ QS ++ E L + V E+ +DE AI + Sbjct: 78 GGNSTGTDMVDEDILANHMELIQSRMIVGEALEQTELVNLPSIESHLDE--KTDAIDYVI 135 Query: 150 EKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSG----YIDYISTLV------ 199 +++ V K SL ++FT ++A+ +L+ Y +I V Sbjct: 136 DQLSIVKGGDGSAKTARSL----NITFTHTEPDDAKRILTAVMKRYEQFIIDQVEQVMGR 191 Query: 200 VKESLENVRNKLEIKTQFEKEKLAQDRIKT---------KNQLDANIQRLNYSL 244 E + + ++E + +++ + R + N +RL L Sbjct: 192 ANEMVNKAKTEVEAELVAAEQEHLKARQEAPLFFQGEGSSNIYQDRYRRLQDEL 245 >UniRef50_Q39VZ4 Lipopolysaccharide biosynthesis n=5 Tax=Geobacter RepID=Q39VZ4_GEOMG Length = 401 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 54/374 (14%), Positives = 126/374 (33%), Gaps = 41/374 (10%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPE--PVQWQE 81 +EI+LL L+ VL R K+ + + A A S LP +T A V PP+ Sbjct: 13 EDEINLLELLQVLVRRKRLIAVMCVAAALLSAAYSLTLPNIYTGTARVLPPQKDGGGGLS 72 Query: 82 LEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDL 141 + L +L++ +S S+ + ++ + + + Sbjct: 73 ALLGGQAGALAGLAGVGGLGGGADLYVGILKSRSVADAVIKKLDLQKELETKTPDETRTK 132 Query: 142 HRAIVALSEKMKAVDDNASK----------------------------KKDEPSLYTSWT 173 + +V + + A+ K ++ Sbjct: 133 LQNVVKIQAGKDGIITVAADSRNPQLAARLANTFVDELGKKSVELNLTKAGTERIFLEKR 192 Query: 174 LSFTAPTSEEAQTVLSGYI-DYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIK-TKN 231 L ++A+ L G+ + V ++ + ++K + +++ ++ + Sbjct: 193 LDVVKADLKKAEEALRGFQEKNRAFKVDDQATATIEGAAKLKAEIVSKEVQLASLRSYQT 252 Query: 232 QLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDV 291 + ++ + +L A G + + G D + ++ G+ + + + V Sbjct: 253 NENPEVKAVEAAL--ARLRG-QLGALTGGGRSNDLMLSAGAMPTLGL-EYVRLMREVKTQ 308 Query: 292 AELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGM 351 + +L QY V +L +A + + + P KK P +++IVILS + Sbjct: 309 EAIFEQLTK-QYEVAKLGEAK----DSSSIQVLDEAVAPQKKSKPKRSLIVILSTVTALF 363 Query: 352 VACGGVLLRYAMAS 365 + ++ Sbjct: 364 LGIFIAFIQEYAQK 377 >UniRef50_C9LJ77 Chain length determinant protein n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LJ77_9BACT Length = 353 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 50/360 (13%), Positives = 114/360 (31%), Gaps = 35/360 (9%) Query: 29 LLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTP--PEPVQWQELEKSF 86 LL + +L K + F + +P+ + S V+ P P S Sbjct: 8 LLKVARLLLSKWKQIFIFCFIVVSLSIGYIMSIPRSYQSDVVMLPEIPSNSSLSSGLGSL 67 Query: 87 TKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHR--- 143 + + L + F K +P + L + L + Sbjct: 68 ASMAGVKLGNGDSEDAIYPEFYPKV----------VKTPDFLVALLNKPVRPKGLKQDVS 117 Query: 144 AIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVL-----SGYIDYISTL 198 + L++ KA ++ + + T +AQ L + + ++ Sbjct: 118 LFIYLTQHQKAPWWDSLFQWGGLGSKETPTNKIDPQRLTKAQEKLLKGLGASIVSFVDKR 177 Query: 199 VVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQR-LNYSLDIANAA----GIK 253 ++ E+ Q Q + N + + + Y+ I+ A Sbjct: 178 TNMVTINVTMQDPEVAAQVATMVENQLQQYIANYRTSKARNDVKYAEKISQKALEDYKAA 237 Query: 254 KPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHV 313 + VY+ D + + E + + +L ++ QL +A V Sbjct: 238 QKVYARFADANQDLV---------LTSVQQEETRLENEMQLAYNGYSQSVTQLQLAQAKV 288 Query: 314 NDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMA 373 + F ++P+K P + I V + A++ ++C ++++ AM + + ++ Sbjct: 289 QE-RMPAFTVLQQANVPIKPSAPKRMIFVFMMAVLSFSLSCLWIIIKSAMRDQPEMQLLE 347 >UniRef50_A4C494 Exopolysaccharide biosynthesis protein, putative n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C494_9GAMM Length = 686 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 54/436 (12%), Positives = 122/436 (27%), Gaps = 91/436 (20%) Query: 21 SPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQ 80 P+ +EIDL +L+S+ W K ++ V GL I +P + + V Sbjct: 6 KPAEDEIDLADLLSLFWIKKWFILVVTGIVFAIGLSIVDRMPNIYKATTTVMVKGSKANN 65 Query: 81 ELE----------------------KSFTKLRVLDLDIKIDRTEAFNLFI---------- 108 L+ F + V L I + + F Sbjct: 66 PLQSLVPGMGSANDDLDTTIKLLKSSQFAQTIVDSLSIPATLNQYASDFTWSGDDLLTHL 125 Query: 109 ------------KKFQSVSLL----------EEYLR------------SSPYVMDQLKEA 134 F+S + +++ S ++ +++ Sbjct: 126 SINIVSKTNLLEISFESQDAKFSAVVANQIAQAFMQYQTDLMQPHSNKSDDWINSKIQGV 185 Query: 135 KIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDY 194 K ++A + VD ++ + + + +L + Sbjct: 186 KDSLEVEEAKLMAFRQSQNVVDIASNVTIAKQEISLLYR---ELRELNLQFDLLKRFSQK 242 Query: 195 ISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNY-------SLDIA 247 +S + + +E + Q + ++ L+ +L IA Sbjct: 243 VSL-ANNDLNALLVINEITNAPIIRELVQQKASQQAQLSQIKLRYLDKHPTFKSMALKIA 301 Query: 248 N-----AAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQ 302 + ++ + + + ++ L +E A+ E R+ Sbjct: 302 DTEQQLEKEVEAFIVAMTKNKQEVELQISELELKQQNANDLLESAIIQEQEFKKIQRSVD 361 Query: 303 YLVEQLTKAHVNDVNFTPFKYQLSPSL---------PVKKDGPGKAIIVILSALIGGMVA 353 ++ L K S P+ P KA+I +S ++G +++ Sbjct: 362 ANIKLLESLSAKQKETELLKDITDSSDIIVVDPAITPISPIRPKKALIAAVSCVMGFILS 421 Query: 354 CGGVLLRYAMASRKQD 369 V+L + A + Sbjct: 422 IVLVILLHFFADAHRR 437 >UniRef50_B9ZNL2 Lipopolysaccharide biosynthesis protein n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZNL2_9GAMM Length = 371 Score = 55.6 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 58/394 (14%), Positives = 135/394 (34%), Gaps = 59/394 (14%) Query: 1 MSSLNIKQGSDAHF----PDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLL 56 MS+ + S+ PD S ++EI L++L +VL R K + AV A G L Sbjct: 1 MSTKDSSPTSETRTSGDRPDPGNHSRYDDEISLVDLWNVLSRRKWWIAAVTIAVLLLGTL 60 Query: 57 ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFI------KK 110 F+ ++ + + + +E D + T N+ I Sbjct: 61 YGFLKTPSYSFQTTIQLGQDDRGNPVE-----------DPNVTVTFLNNVLIPGIWRDLL 109 Query: 111 FQSVSLL-----EEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDE 165 S Y+ + YV A +D + + L+ + Sbjct: 110 ADSPETRPPEASARYVDGTEYVH-LTTSAPMDRKEAVEQLHTLTTR-------------- 154 Query: 166 PSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQ-FEKEKLAQ 224 +L + +E A + + + +++ ++ + E K + + +L Sbjct: 155 -ALRQNHVQHIDDIRAELADQRREQELQHAAQ--LEQLQGDLDSITEHKERATSRLELLT 211 Query: 225 DRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGAD-GIERKL- 282 + + + L LD A A + + + A+ + +L Sbjct: 212 EERALLEEQIDGLHPLREQLD-AALADTDQSAAPLWSMMPLTSIVDMRYSAERRLRTELP 270 Query: 283 ----EIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSP----SLPV--- 331 E+E+ ++++ + + ++ + + + ++ + + + + Sbjct: 271 DHVQEVEQRLSELESSSERIASQMEREQSRHEIAMAALDRREQRVRETVARGSDYALASN 330 Query: 332 KKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 +GPG+++ V LS ++G M+ G R +A+ Sbjct: 331 TPEGPGRSLFVALSLILGLMLGVFGAFFREFLAN 364 >UniRef50_A6BAV1 OtnB protein (Fragment) n=1 Tax=Vibrio parahaemolyticus AQ3810 RepID=A6BAV1_VIBPA Length = 175 Score = 55.6 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 4/107 (3%) Query: 35 VLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLD- 93 LW K V+A F A + +L + LP + + A++ P E L K +L L Sbjct: 1 ALWEGKWIVIATTFVIAVSAVLYALSLPNIYKADALLAPAESSNGGGLSKMAGQLGGLAA 60 Query: 94 ---LDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKID 137 +++ + +L ++ +S + ++ ++ + D Sbjct: 61 LAGVNLGASESSQTDLAVQVMRSRQFINTFINKHDLLVPLMAGKDWD 107 >UniRef50_C4KCH6 Lipopolysaccharide biosynthesis protein n=1 Tax=Thauera sp. MZ1T RepID=C4KCH6_THASP Length = 408 Score = 55.6 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 61/395 (15%), Positives = 118/395 (29%), Gaps = 64/395 (16%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQW 79 A +++IDL ++ LW+ K + + A G+ S + + T ++TP Sbjct: 10 AYKDDDKIDLSQMVGTLWQQKGLIAGIGVLGAVLGVGGSLLSTKYITEGLLLTPSASAPA 69 Query: 80 QELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPY--------VMDQL 131 + K L D + + S S LE++LR + + Sbjct: 70 SDPTKKLQLLSASD----------YKRYESALSSGSRLEDFLRITSQTETPDGQRLQAIA 119 Query: 132 KEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGY 191 K + + KA A + + P++ T+L+ Y Sbjct: 120 KLPSGLREVIKPEFAFTDKDQKAFGIKADGDAQNALVGLRIRYAGKGPSNGTPLTLLAEY 179 Query: 192 IDYISTLV--VKESLENVRNKLEIKTQFEKEKLAQDRIK--------------------- 228 + V + +L N + ++L D + Sbjct: 180 VRDSVIKVDLAESTLTNCNTHATRAQELRNQQLQSDFVIRQETQRIADLREIIARHPDAG 239 Query: 229 -TKNQLDANIQR-LNYSLDIAN---AAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLE 283 +++ ++++ L A AA I+ +A ++ + L Sbjct: 240 AAESRQIVSLEKGTERFLSPAAQLVAAEIQIADLKLAKAQRERERVASELKRKYYCDAEA 299 Query: 284 IEKAVTDVAELNGELRNRQYLVEQ-----------------LTKAHVNDVNFTPFKYQLS 326 K +L EL+N Q Q L + + T ++ Sbjct: 300 ALKQAVSGRKLLAELQNLQSAAFQGRDRAADIVEQTWNELDLERERWKNTYITGMRFVTP 359 Query: 327 PSLPVKKD-GPGKAIIVILSALIGGMVACGGVLLR 360 P ++ P A V L L+G + VL R Sbjct: 360 PEGTEMRERKPEVAPGVALGGLLGVIAGMMFVLGR 394 >UniRef50_Q74C20 Capsule polysaccharide export protein, putative n=1 Tax=Geobacter sulfurreducens RepID=Q74C20_GEOSL Length = 406 Score = 55.2 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 48/376 (12%), Positives = 115/376 (30%), Gaps = 49/376 (13%) Query: 27 IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSF 86 I +L + V+ K + + L+IS LP + + + PP + + Sbjct: 23 ICILEYLEVVLCGWKLITILTVLAFVLSLVISISLPNVYKATTRILPP------QQDSGL 76 Query: 87 TKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIV 146 L + + K + + S + + + ID+ +L + Sbjct: 77 LGLMLGQAGSFGGVGPLATDLLGKANPADMYVSIMTS-----EAISDKIIDKFNLMKVYN 131 Query: 147 ALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYID-YISTLVVKESLE 205 + + T+S + A + + Y++ + LV S E Sbjct: 132 EKYRIDAYKVLDNNIDILAGKKDGIITISVEDEDPQRAANIANAYVNELSNLLVQLNSKE 191 Query: 206 NVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAA--GIKKPVYSNGQAV 263 + +N++ + + K K+ R + + ++ D A AA I + Sbjct: 192 SAQNRVFYEERLAKAKVDLARSEDNLKQFQTKYKVVSVADQAQAAISNIAQLNAQLIAQE 251 Query: 264 KDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKY 323 + D +E K ++ + + + +R+ + ++ F+ Sbjct: 252 IQLSNLRKQFTEDSLEVK-NVKSTINGLRNQISRIESREAGGAIPNMGLIPELGQQYFRL 310 Query: 324 Q----------------------------------LSPSLPVKKDGPGKAIIVILSALIG 349 + +P KK P +++IV +S +I Sbjct: 311 MREFKVQEAIVDLLTKQFESAKLGELKDSYYVQIIQTARVPDKKSKPKRSMIVAMSTVIT 370 Query: 350 GMVACGGVLLRYAMAS 365 V++ + ++ Sbjct: 371 FGFGILSVIIMHMLSK 386 >UniRef50_C6JIE9 Predicted protein n=2 Tax=Fusobacterium RepID=C6JIE9_FUSVA Length = 318 Score = 55.2 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 55/356 (15%), Positives = 123/356 (34%), Gaps = 60/356 (16%) Query: 21 SPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQ 80 +EID+ L+ ++ + K V+A+ + GL ++F + + Sbjct: 9 YYEEDEIDIYELVDIIIKRKILVLAIFIICSLLGLGVAFFVRSLKQDTLALKFNINYAKL 68 Query: 81 ELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELD 140 E F K + I +D N ++ +F + L E ++++KE ++ Sbjct: 69 ENNYFFAKSGLNFTKINVDNILITNKYVDEFFKLEKLNE------LYLEKIKEGNRNDYS 122 Query: 141 LHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQ-TVLSGYIDYISTLV 199 + + N K S+T+S T +E Q +L+ YI I +L+ Sbjct: 123 RSKFL------------NDILKVSFNRDTNSYTVSVTMKKDQELQKDILNKYITIIESLI 170 Query: 200 VKESLENVRNK---LEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPV 256 + + + N+ +E + + +EKL + K L+ LN +I P+ Sbjct: 171 NIQVDDEIENRYTFVESENRISREKLNKIENHIKEILEKEKNNLNKDTNIKEFIEYTNPI 230 Query: 257 YS---NGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHV 313 S + + +G +G++R + V ++ L+ + + Sbjct: 231 LSVEREKVTSLYNQSSEMLIGLNGLKR----DDEVKNIITLDSSIYEIET---------- 276 Query: 314 NDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQD 369 +I+ + L+G ++ + + + K+ Sbjct: 277 ---------------------KSKAKMILAVGILLGIVLGIMSAFIAEFIDNYKKR 311 >UniRef50_Q161P5 Chain length determinant domain protein n=2 Tax=Roseobacter RepID=Q161P5_ROSDO Length = 689 Score = 55.2 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 63/432 (14%), Positives = 122/432 (28%), Gaps = 83/432 (19%) Query: 13 HFPDYPLASPSNNE-IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVV 71 +P ++ + ++ L +LW K +M F ++ P +T+ A + Sbjct: 5 PRNTFPEQPDQDDSPVGIVALWRLLWGNKLRIMVPAFILTLLTAILVLRAPDTYTAEAQM 64 Query: 72 TPPEPV-QWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQ 130 + E + + ++ L + + L + P V Sbjct: 65 LLARGNLEIVEFDSA----GDAEVTQGAIVNALTILGSRSLALQVIERLDLTNDPEVNPN 120 Query: 131 LKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEE----AQT 186 + D + + + ++ P L T E+ A Sbjct: 121 IAILADDPEAEIYPDSIVRQFALDWLASITQVSILPGT-NVIVLRATTTVPEKSAAIANA 179 Query: 187 VLSGYIDYISTLVVKESL----------ENVRNKLEIKTQFEKE----------KLAQDR 226 L Y+DY E+ +R +LE ++ + D Sbjct: 180 YLDAYLDYQLQRGQSETERAAGALRTRVNELRLRLEADQALLQDYSASATSTAMESTSDL 239 Query: 227 IKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQ-----AVKDDPDFSISLGADGIERK 281 + A ++ SLD NAA G A D + + + + R Sbjct: 240 AGEAVNVRARLESTQTSLDQLNAALAVLDATPEGDFEAVRAAVDQNETLLRMERTNLGRS 299 Query: 282 LEIEKAVTDVAELNGELRNRQYLVEQLTKAHVN------------------------DVN 317 + E D+ L ++ + EQL A N +V Sbjct: 300 VGAETVAQDIETLRAAVQAERSRFEQLNAALRNGLVAIEERIAEANAFMVGLRQLEVEVE 359 Query: 318 FTPFKY-----------------------QLSPSLPVKKDGPGKAIIVILSALIGGMVAC 354 T Y + P++ D G+ +V ++A++G + Sbjct: 360 TTSQVYESSLARLKELSIQTGLRDAGAQILATAEAPLRTDAQGRRRMVAIAAVLGLFIGI 419 Query: 355 GGVLLRYAMASR 366 VL+R A R Sbjct: 420 AHVLVREAANDR 431 >UniRef50_Q2T3S0 Chain length determinant protein domain protein n=19 Tax=pseudomallei group RepID=Q2T3S0_BURTA Length = 405 Score = 54.8 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 54/374 (14%), Positives = 119/374 (31%), Gaps = 40/374 (10%) Query: 31 NLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLR 90 +++ L K + +V A G+ ++ +LP + + V+ PP+ + + Sbjct: 28 DVLIALGHGKGLIARIVAAAVLLGIALALVLPPIYEARTVLLPPDESRGLFGHSLGSLDV 87 Query: 91 VLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEA-KIDELDLHRAIVALS 149 + + ID L++ +S S+ + +R + L + Sbjct: 88 IAGAAMGIDFKTPGELYVALLKSTSIEDSLIRQFGLRKRYRVDTMHAARKALQSRVSVTL 147 Query: 150 EKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRN 209 +K + A+ D A A L I + LE + Sbjct: 148 DKKSGLLTIAADDTDPAVAAD------LANAHVAALAKLLERIAVTQAQQRRAFLEKEVD 201 Query: 210 KLEIKTQFEKEKLAQDRIKT-----------KNQLDANIQRLNYSLDIANAAGIKKPVYS 258 K + ++ + + K+ + A I+ L + I + I + Sbjct: 202 KSRVALANAQDAYVKLQAKSGVVSVDADTQLAIRHSAEIRSLLAAKQI-ELSSIGTYATA 260 Query: 259 NGQAVK----------------DDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQ 302 VK ++ D + G+D L + + E ++ +RQ Sbjct: 261 ENPQVKRIEAEVSTLKAQLEKIENGDAASLRGSDAGMATLRSYREMK-YQENVVDVLSRQ 319 Query: 303 YLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYA 362 + ++ +A + + P +K P + +I++ S G ++A V+ R Sbjct: 320 LELARVDEAKSGPLVQQ----VDVAAPPERKAKPSRLLILLASFAGGFVLAVTVVIGREF 375 Query: 363 MASRKQDAMMADHL 376 A + L Sbjct: 376 GRQAVDHARRSGDL 389 >UniRef50_B2TEB6 Exopolysaccharide transport protein family n=5 Tax=Burkholderia RepID=B2TEB6_BURPP Length = 740 Score = 54.8 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 6/117 (5%) Query: 21 SPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQW- 79 S +EID+ LI V+++ KK ++AV G++ +F+ + V + Sbjct: 6 SRDEDEIDIRALIDVIFKNKKLIIAVTIVCTLIGVMYAFLATPIYRGDITVQVEDNSDLA 65 Query: 80 ----QELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLK 132 L T L + + + + V L Y+ + P L Sbjct: 66 GAAAGNLMSGLTSLFDIKSTDDGEMQILDSRLVTA-NMVDELRLYIDARPKYFPLLG 121 >UniRef50_Q2S4Z4 Chain length determinant protein n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S4Z4_SALRD Length = 435 Score = 54.4 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 69/430 (16%), Positives = 129/430 (30%), Gaps = 87/430 (20%) Query: 3 SLNIKQGSDAHFPDYP--LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 S + P P +EI L+ LI L R + ++ V G+L S Sbjct: 4 SESTPSRDGGPRGSRPGRRMPPPEDEITLMELIVTLSRGRGLIVLSVVGIGLLGVLYSVA 63 Query: 61 LPQKWTSAAVVTPP---------------------------------EPVQWQEL-EKSF 86 P ++T+ + V P + E+ Sbjct: 64 TPSRYTAESKVIREAGEGGGGPSLPSGIGGIAGGLGIDIGGGGSVGLSPASYPEIATSRE 123 Query: 87 TKLRVLDLDIKIDRTEAFNLFIKKFQSV-SLLEEYLRSSPYVMDQLKEA----------- 134 +L V F+ L++ L + Y+ +K A Sbjct: 124 VRLAVARDTFYFPSLGRRTTFVDYVNRPPGTLDQILSYTVYLPWTVKGALGSLIGSGQGK 183 Query: 135 -KIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW-------TLSFTAPTSEEAQT 186 I E+ KA+ S + T+S ++ + Sbjct: 184 RSAGTDSTGTLIYPTEEEEKAISALGEMVSASVSESGALEGGSGLMTVSASSGNPGLSAR 243 Query: 187 VLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDI 246 + +I+++ T V + E R L + E + Q+ +N+L ++R L Sbjct: 244 LNERFIEHLRTRVRELQTEKTRRNLRFVEKRFGE-VKQELDAAENRLVQFLERNKGVL-- 300 Query: 247 ANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVE 306 AAG K + S + ++ + F L + V + +L+ Q +V Sbjct: 301 --AAGSKPQLESRRERLRREVGFKEQLYSQM----------QKQVTQTRLQLQKEQPVVT 348 Query: 307 QLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASR 366 K P + + V+LS +GG+ G R A+ S+ Sbjct: 349 VAEKPAPPAEPSAP----------------NRTLNVVLSLFLGGLFGVGATFFRSAIQSQ 392 Query: 367 KQDAMMADHL 376 + D + + Sbjct: 393 EDDGEAQEQI 402 >UniRef50_C8X034 Lipopolysaccharide biosynthesis protein n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X034_DESRD Length = 296 Score = 54.4 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 74/224 (33%), Gaps = 24/224 (10%) Query: 18 PLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLI-SFILPQKWTSAAVVTPPEP 76 ++ +++EIDL+ L +LWR K V V A I F + + + A + E Sbjct: 22 QVSPQADDEIDLVELWLILWRRKWLVAGVTILATLAATFITVFGIQPAYKATATIRAVET 81 Query: 77 VQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKI 136 ++ + + L S + + + + E Sbjct: 82 EEFSNKDFLESVLT----------------------SNIFKRKVIEQNSLLPHYFPEKWN 119 Query: 137 DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 196 + R+ V + + + K + S + +L++T A L +D Sbjct: 120 PQEGTWRSGVDIPTSTQVLASGRFPLKIQTSGH-EISLTWTDADPHFAANQLEKTLDVFR 178 Query: 197 TLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 + + + + + I T + + + + +L+ + L Sbjct: 179 SHLSQATPAETKQIATIDTHIQSLQEIKGATEAPEELNIELASL 222 >UniRef50_B6C223 Chain length determinant protein n=1 Tax=Nitrosococcus oceani AFC27 RepID=B6C223_9GAMM Length = 285 Score = 54.0 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 44/250 (17%), Positives = 90/250 (36%), Gaps = 33/250 (13%) Query: 7 KQGSDAHFPDY--PLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQK 64 + S FP +EI+LL+L +L R K TV+ AG+ SF++ Sbjct: 23 RPSSSMAFPQSGEYRGHHDEDEINLLDLWQILVRRKWTVIVFFLIVTTAGITASFLMTPI 82 Query: 65 WTSAAVVT----PPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 + + + PP+ V +QE+ ++ R + + +S SL ++ Sbjct: 83 YRAGVTLLIDREPPKVVDYQEI---------APVESPASREDFYQTQYGLLKSRSLAKQV 133 Query: 121 LRS-----SPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW-TL 174 P + K + L EK K ++ + EP + + Sbjct: 134 FEELDLAHHPVFAVEQKPSFWSRLMSKEEETGGQEKEKLIERFQEEITVEPVRNSRLVKI 193 Query: 175 SFTAPTSE-EAQ--TVLSGYIDYISTL------VVKESLENVRNKLEIKTQFEKEKLAQD 225 + +P E AQ L +I+ + + ++++L ++ + E+ Q Sbjct: 194 YYDSPDPELSAQVVETLGQ--AFITANLERRYDATAYARDFLKDRL-LQVKARLEETEQK 250 Query: 226 RIKTKNQLDA 235 ++ N + Sbjct: 251 LVEYANNHEI 260 >UniRef50_Q39TL3 Lipopolysaccharide biosynthesis n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TL3_GEOMG Length = 409 Score = 54.0 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 58/383 (15%), Positives = 137/383 (35%), Gaps = 56/383 (14%) Query: 29 LLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTK 88 LL+ +V+ + + + A A ++ + +LP +T+ +++ P + + + + Sbjct: 21 LLDFAAVIIKHWRLTACITLAAALVAVIYTLMLPNLYTARSMIL-PLEDDREGVGAALGQ 79 Query: 89 LRVLD-------------------------LDIKIDRTEAFNLFIKKF--QSVSLLEEYL 121 L L D IDR + K+ ++ L+ + Sbjct: 80 LAGLAGVGRIGLGNPSKADVYLAMLNGETIRDPLIDRFRLLEAYEAKYRTEAYGALDRNV 139 Query: 122 RSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASK----KKDEPSLYTSWTLSFT 177 + D + +D+ D RA + ++ + A++ +Y L+ Sbjct: 140 AVTVGKKDGIITIAVDDRDPRRAAEMANAYVEELGRLANRLNMASAGNDRMYLEKRLASA 199 Query: 178 APTSEEAQTVLSGY-IDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDAN 236 +A+ L + + V ++ + +++ Q +++ +++ + Sbjct: 200 RVDLAKAEDALKAFQSKNKAVSVSDQAKATIDGVAQLRAQLAAQEVQLSAYRSQFTDSSQ 259 Query: 237 IQRLNYSL------DIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTD 290 R + + IA G G A+ LG + + + Sbjct: 260 EVRTSKAAIGRLQAQIARLEG----NGGGGSAIPSVGSMP-QLGQQYLRLMRDFK----- 309 Query: 291 VAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGG 350 + E EL +QY V ++++ + +PF+ +P KK P + +IV+++AL Sbjct: 310 IQETMVELLAKQYEVARMSEVK----DVSPFQVLQVAKVPEKKSKPHRTLIVLVAALTAF 365 Query: 351 MVAC--GGVLLRYAMASRKQDAM 371 + + VL + +QD M Sbjct: 366 LCSIYLSFVL-EHLDRMSEQDKM 387 >UniRef50_B0K509 Lipopolysaccharide biosynthesis protein n=14 Tax=Thermoanaerobacterales RepID=B0K509_THEPX Length = 315 Score = 54.0 bits (128), Expect = 9e-06, Method: Composition-based stats. Identities = 51/351 (14%), Positives = 124/351 (35%), Gaps = 40/351 (11%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFIL-PQKWTSAAVVTPPEPVQWQEL 82 EI L LI V+ + KKT++ V ++SF + + + ++ + Sbjct: 2 EEEISLRELIEVILKYKKTIIIVTLTATLVAAVLSFFVIKPTYEATTTLSVTDVTPATGF 61 Query: 83 EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLH 142 S T + + D + ++ ++ +S L +Y S ++ KE + + L Sbjct: 62 FGSNTTVILPGKDSNLPTVQSDSIEKDLSLLLSSLLKYPNMS---VEAFKEEVTNPIVLM 118 Query: 143 RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKE 202 + L + KK+ S+ + L + + ++ + Sbjct: 119 NTVKQLGLDPQKYTIENLKKQISVSVINNTNLITVTVKENDPK---------LAAKIADT 169 Query: 203 SLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQA 262 +N R + + + +KL + K + I+ + L+ Q Sbjct: 170 IAQNFRTYIIERNNRQTDKLIETLNKLITLQNDKIKEVTAELN-------------KIQT 216 Query: 263 VKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFK 322 D + +++L++ K D+ + + ++E + ++ + + + Sbjct: 217 NSQDKLLI-----EQKQKQLDLLKTTRDI------MLEKYNMLELVKESELGNQSILITS 265 Query: 323 YQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMA 373 L P PV P K++ +I++ ++G MV+ V + + + Sbjct: 266 KALIPDKPV---APKKSLNIIIAFILGLMVSIFIVFFMEYWKNTEPKRAVE 313 >UniRef50_B8CL31 Chain length regulator (Capsular polysaccharide biosynthesis) n=53 Tax=Gammaproteobacteria RepID=B8CL31_SHEPW Length = 736 Score = 54.0 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 40/321 (12%), Positives = 104/321 (32%), Gaps = 32/321 (9%) Query: 2 SSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFIL 61 S+ + P S SN +IDL L +L A+ ++AV F G++ + + Sbjct: 9 SNTPFQANQSQPLPQ----SNSNGDIDLGKLFGILLDARWLIIAVTSLFTTIGVIYALLA 64 Query: 62 PQKWTSAAVV-TPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 + + A++ + L + + + + + Sbjct: 65 TPVYKADALIQVEQKSSGMSALVGDMGDMFSSESSATTEVEIIKSRMVLG---------- 114 Query: 121 LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT 180 ++ + + + + L+ + A+ S+ + + ++ LS + Sbjct: 115 -KTVDKLNLTTLAQPQYLAVIGKGLSRLTGESNAIK--ISRFQTPNNTVANFILSVD-DS 170 Query: 181 SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 ++ A T+ + + +V E + + Q + +K IQ L Sbjct: 171 AKGAYTLYNQEGRKVLAGLVGELAT--KGDYSLFVQQLVGSKGDEFAVSKRSKLDAIQWL 228 Query: 241 NYSLDIANA-----------AGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVT 289 +L ++ AG +K + + F ++ D E + + + Sbjct: 229 QKNLSVSERGKQTGILQLSFAGEEKQLIEEILNNVSENYFLQNVARDSAEAQKSLNFLQS 288 Query: 290 DVAELNGELRNRQYLVEQLTK 310 + + EL + + + + + Sbjct: 289 HLPSIKTELTDYEDTLNRYRQ 309 Score = 40.5 bits (93), Expect = 0.094, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 2/85 (2%) Query: 279 ERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGK 338 + + E+ + DV V++L+ V + + P K Sbjct: 381 KTQREVLRMTRDVEVNQQIYIQLLNKVQELSILKAGTVG--NVRILDKAQSYSQAIKPKK 438 Query: 339 AIIVILSALIGGMVACGGVLLRYAM 363 +IV+L+ L+G M+A VL++ A+ Sbjct: 439 PLIVVLATLLGAMLAIAVVLVKAAL 463 >UniRef50_C6NU30 Lipopolysaccharide biosynthesis n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU30_9GAMM Length = 276 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 59/215 (27%), Gaps = 9/215 (4%) Query: 7 KQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWT 66 + + + P +EI L L LWR K V+ F L + Sbjct: 4 QPITTPPAIQIIASPPPEDEISLWELWERLWRGKWLVVGSSVVFLALAGLYLATSTTIYQ 63 Query: 67 SAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLL--------E 118 S A+V S +V + ++ EA + + E Sbjct: 64 SKAIVQVGMVAGQPLANTSLLAQKVYNNYRPVNTIEAKKQLPRIHSASVEKSDANLLELE 123 Query: 119 EYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEP-SLYTSWTLSFT 177 Y RS L L + A + K +++ + T Sbjct: 124 SYGRSPEEAQSYLHSIVQSLLSREQDRYAQTLKFHQTQLKELQRQYRALETSSPSDTRHT 183 Query: 178 APTSEEAQTVLSGYIDYISTLVVKESLENVRNKLE 212 A +L + + + + + N N+L Sbjct: 184 KHREPSALLLLEQSMRFSEASSLLQQIANAENQLS 218 >UniRef50_P58764 Tyrosine-protein kinase etk n=184 Tax=Enterobacteriaceae RepID=ETK_ECO27 Length = 726 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 27/56 (48%) Query: 16 DYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVV 71 + P S NEIDLL L+ LW +K +++V F + S + + + +V Sbjct: 7 NTPPGSTQENEIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLLSTPIYQADTLV 62 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 49/292 (16%), Positives = 102/292 (34%), Gaps = 24/292 (8%) Query: 80 QELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYL---RSSPYVMDQLKEAKI 136 Q LEK L + D+ K + + +L + RS M +L Sbjct: 178 QRLEKDGVALTIADIKAKPGTQFVLSQRTELEAINALQGTFTVSERSKESGMLELTMTGD 237 Query: 137 DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 196 D + R + +++ + +D S L F E ++ L + ++ Sbjct: 238 DPQLITRILNSIANNYLQQNIARQAAQDSQS------LEFLQRQLPEVRSELDQAEEKLN 291 Query: 197 TLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPV 256 V ++ ++V LE K E+ +++ +A I +L + + Sbjct: 292 --VYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQL-----YKKDHPTYRAL 344 Query: 257 YSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNG---ELRNRQYLVEQLTKAHV 313 Q ++ + + + E+ + DV +L NRQ + + + Sbjct: 345 LEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKSSAI 404 Query: 314 NDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 +V + + P + P KA+ V+L ++G ++ G VL R + Sbjct: 405 GNVRII----DPAVTQP-QPVKPKKALNVVLGFILGLFISVGAVLARAMLRR 451 >UniRef50_A3V8G8 Protein-tyrosine kinase n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V8G8_9RHOB Length = 618 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 52/399 (13%), Positives = 112/399 (28%), Gaps = 80/399 (20%) Query: 27 IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI-LPQKWTSAAVVTPPEPVQWQELEKS 85 +D+ ++ VLW K V+ F F + + ++ + ++ Sbjct: 17 VDIRHIFRVLWAGKWVVVLTTFLAVLMAGYYGFTIARPQHAAVTIIEIRTTQAFAIPGQT 76 Query: 86 FTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAI 145 T + + T I K L+ P L + L Sbjct: 77 STDVPPGTQVQILLATPILEQVIAKLD--------LQDDPAFNRYL--TPVPPLSPRGLR 126 Query: 146 VALSEKMKAVDDNASKKKD-EPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESL 204 L ++ + L + + T ++ +L V + Sbjct: 127 TTLRNLLQGRSEPVPDDAAIASKLVQNLRAAIRVETPRDS-DLLR----------VTVTT 175 Query: 205 ENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVK 264 + + I LA + ++ A+I +L A +A ++ + A+ Sbjct: 176 GDPDRAMAIANTLAAVYLADQVARKQDATAASI-----ALLGARSADLRSHQAAIEAAIT 230 Query: 265 D--------DPDFSISLGADG-------------------------IERKLEIEKAVTDV 291 D DP LG D + ++ + Sbjct: 231 DLVARAGLHDPTRPDRLGHDLQDTTTRLASAQAALARASDTANTQRLTAQIAALQTNRAD 290 Query: 292 AE-------------------LNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVK 332 L+ + + ++L + P L+ + + Sbjct: 291 LAAALQALTAASHARDRMQRDLDMAIAQQAGYQQELRALTLGAAQIAPDSRVLNAATEAR 350 Query: 333 KDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAM 371 GP K ++V ++A++GG+ V LR+++ DA Sbjct: 351 YIGPQKLLMVQIAAMVGGLGGLMLVALRHSLRRGFTDAA 389 >UniRef50_Q0AW94 Capsular polysaccharide biosynthesis protein-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AW94_SYNWW Length = 435 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 63/429 (14%), Positives = 131/429 (30%), Gaps = 84/429 (19%) Query: 18 PLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI-LPQKWTSAAVV----- 71 P EIDL ++ + + K T++AV + SF L + ++ VV Sbjct: 6 PSYYNDYEEIDLRDIFKTINKWKHTIIAVTLICVLLSGIFSFFVLDPVYEASTVVSIYQA 65 Query: 72 -----------TPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 + E+ + + L Sbjct: 66 QLNREKESSNDITDTVNELGEIPYMSAVSCEQQVKSPAIIEAVIKKLQLPYTRNGLKSSI 125 Query: 121 ----LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSL-------- 168 ++++ ++ + D + L E+ + +K+K SL Sbjct: 126 KTQQVQNTNLIIITVSNN--DPELAAKIANTLREEFILHINKINKRKMAQSLEIMEKEWL 183 Query: 169 -YTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRI 227 L + +E + S I+++++ + K+ + + + + Q+ I Sbjct: 184 QKEEVELDVVSEKLKE-HKLQSRSIEFLNSQLGKKREDLINYQSWLAKAEIDRASQQEGI 242 Query: 228 KTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFS--ISLGADGI------- 278 K QL I ++L N A P G +KD S I++ + Sbjct: 243 K---QLQETIAHTPHTLTTVNTANGILPADLQGIDIKDGTVSSEQINMNYTSLIEAYNSK 299 Query: 279 ------------ERKLEIEKAVTDVAELNGELRNRQYLVEQLTK---------------- 310 + + EI + ++ +L EL Q ++L Sbjct: 300 TTALAELTVQINKTRQEIARQEKEILDLEAELIINQLGEKKLQNEVSRRESVVDLLSSKI 359 Query: 311 --------AHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYA 362 ++ D N + P PV P K + + ++A++G M+A G+ L Sbjct: 360 AELKMTESINLADNNIITVSEAMVPEAPV---KPNKMLNIAIAAVLGLMLATFGIFLIEY 416 Query: 363 MASRKQDAM 371 + + Sbjct: 417 LRENGTNKS 425 >UniRef50_A3VRW3 Polysaccharide chain length determinant protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VRW3_9PROT Length = 509 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 41/305 (13%), Positives = 109/305 (35%), Gaps = 53/305 (17%) Query: 29 LLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTK 88 ++ ++ LWR + + + + A G +LP + S A V Sbjct: 14 IITIVIGLWRRRWLIAGIAWLAALLGWSAVALLPDLYESRAQVYINTDTAL--------D 65 Query: 89 LRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVAL 148 + D+ ++ +R + + + S LE+ + L +DL R + +L Sbjct: 66 ATISDVAVRPNREKGVQVIRTQLLSSDNLEKVI-----YATGLDAEVEGPVDLQRKVASL 120 Query: 149 SEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYID-YISTLVVKESLE-- 205 +E ++ E + +T + + AQ V++ +D +I + + + Sbjct: 121 AEAIRI----------EQTQENYFTFKYADKDPQTAQRVVATLVDLFIEQNLSNATTDVG 170 Query: 206 ----NVRNKLEIKTQFEKEK----------------LAQDRIKTKNQLDANIQRLNYSLD 245 N+ +L +K K + +++ ++ + + R++ L Sbjct: 171 RAVQNLDRELALKESELKALDDEIAVFKSVNADILAAEERKVRRRDSREGELARVSDLLS 230 Query: 246 IANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLV 305 +A A A+++ P ++ D ++ +L ++ + ++ + + Sbjct: 231 LARAR-----ESRLATALRETPRYAPGDDLDALKLRLATLQSQ--FTDNYPDIVRLKAQI 283 Query: 306 EQLTK 310 +L + Sbjct: 284 AELER 288 >UniRef50_D1PA57 Chain length determinant protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1PA57_9BACT Length = 360 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 50/339 (14%), Positives = 113/339 (33%), Gaps = 23/339 (6%) Query: 27 IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE-KS 85 I+L++ I +L K+ ++ +F GL+++F P+ + S ++ P E S Sbjct: 16 INLVSCIKILLADKRYILIYIFIAGILGLIVAFTTPKTYKSTVMLAPEESGAGFSGSISS 75 Query: 86 FTKLRVLDLDIKIDRTEAFNL-----------FIKKFQSVSLLEEYLRSSPYVMDQLKEA 134 + +++ I + I F ++ L Y LKE Sbjct: 76 LASMVGMNMKIGQSGDALYPEIYPDLVSSTDFIIGLFNVKIRTKDNLIMCDYY-TYLKEH 134 Query: 135 KIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDY 194 + L K + + ++ + W A ++ + ++ +D Sbjct: 135 QKKALMDWPLAALSKVIEKFTQKDITPHRENNKINPFWLTKDEANIAKATEQNINCIVDK 194 Query: 195 ISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQL-DANIQRLNYSLDIANAAGIK 253 ++++ + + K L K + +++ + D A Sbjct: 195 KTSVITISVTDQDPLVAALMADSVKAHLQIAITNYKTKKARVDLKYMEKLFDEARK-QYD 253 Query: 254 KPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHV 313 K G A D D S ++ + + + +L + + QL +A V Sbjct: 254 KARQQYGAAADADMDLS-------LQSYKLKTEDLENDMQLKYNIYQQVVEQLQLAQAKV 306 Query: 314 NDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMV 352 + F S S+P++ K + + + +G +V Sbjct: 307 QE-KTPAFTVVQSASVPIRPSSRSKIMTIFIWMFLGFIV 344 >UniRef50_Q7NZZ7 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NZZ7_CHRVO Length = 401 Score = 52.5 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 51/160 (31%), Gaps = 4/160 (2%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPV----Q 78 N+EIDL L+ L R + ++A L + + +T+ + PP+ Sbjct: 18 QNDEIDLTALLVKLARQRNWIIACTILCGTVTLCYALLAKPIFTAQTSIMPPQQQSSGMS 77 Query: 79 WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 + + + + + ++ L + + E Sbjct: 78 ALLGQLGGLAGAAGGISGLKNPNDLYIGMLQSRTVADKLIARFKLQSRYEQETVEGARKT 137 Query: 139 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTA 178 L + V+ + + AV + + + +L ++ A Sbjct: 138 LQQKSSFVSGKDGLIAVAVDDTDPQFAATLANAYVDELKA 177 >UniRef50_B8F354 Tyrosine kinase, chain length regulator in capsular polysaccharide biosynthesis n=4 Tax=Pasteurellaceae RepID=B8F354_HAEPS Length = 695 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 24/78 (30%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ 78 + +++EIDL+ L+ L K + + + P +T+ A + Sbjct: 1 MNENNHDEIDLVKLLGALLDYKWWIALFTLLVTLFSVAYVLLAPPVYTANASIQVESKSS 60 Query: 79 WQELEKSFTKLRVLDLDI 96 L L Sbjct: 61 RGLLNDFPGVLEGESSSS 78 >UniRef50_D0MHQ9 Capsular exopolysaccharide family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MHQ9_RHOM4 Length = 790 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 41/321 (12%), Positives = 107/321 (33%), Gaps = 33/321 (10%) Query: 18 PLASPSNNE--IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPE 75 P + +E I+ + + R K ++ + A A ++ LP + S+A+V Sbjct: 22 PASDEKRDEGRINFAEIWHTIRRGKWIILLTMLVVAGAIGAYTYTLPPVYESSAIVFVDT 81 Query: 76 PVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRS--SPYVMDQLKE 133 + ++ + E L + + E + + + D+ Sbjct: 82 RGGG---NAPVSVAAFTPIERRALSNELGILRNSAELATRVAEAIVATAETAGAKDRFPI 138 Query: 134 AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLS---- 189 E +I ++ +++ + S ++ + T EEA + + Sbjct: 139 LAPAEDGREPSIREIAFRLR-----ERVRFSPLSDQDMIVITAESTTPEEAAVIANRYAE 193 Query: 190 GYIDYISTLVVKES---LENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDI 246 Y + + E V ++E + Q +E Q +++ + L + Sbjct: 194 EYERFSRERSRESLAAAREFVEKQVEQRRQELEELERQWEAFARSRQVVRLGPQGERL-V 252 Query: 247 ANAAGIKKPVYSNGQAVKDDPDFSISLGADGI----ERKLEIEKAVTDVAELNGELRNRQ 302 A A ++ A +D F + + + ++E + D + ++ + Sbjct: 253 AEVAQLE--------AQRDAARFQLEQEKSALQFIEQELQKLEPGLVDELVKSRQVSTLE 304 Query: 303 YLVEQLTKAHVNDVNFTPFKY 323 ++ L+K + ++ +Y Sbjct: 305 AQIDALSK-KIAELKVQAEQY 324 >UniRef50_A0NNU3 Putative MPA1 family protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NNU3_9RHOB Length = 636 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 57/357 (15%), Positives = 114/357 (31%), Gaps = 27/357 (7%) Query: 26 EIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKS 85 + + VL R + + A ++ K+ + + + + + Sbjct: 20 QFGFFAMFKVLRRNWLWLTLAMLLGLGAAYQALQVIQPKFAARSTIILANVE--TRINPT 77 Query: 86 FTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAI 145 T + D + TE L +F E L S Y L + + + Sbjct: 78 ETTIENSDTSLIHVETEIDLLRSVEFARKVASELNLISDSYFNPYLSATETPVPNQDQQF 137 Query: 146 VALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSG-YIDYI---STLVVK 201 A+ ++ +D +++ E A + + LS YI+ VV+ Sbjct: 138 EAV--LVRMLDSYTVERRGESLALDIRVRHPDAGMAAQLANTLSKTYIESSLREKKEVVQ 195 Query: 202 ESLENVRNKLEIKTQFEKEKLAQDRIKTKN----------QLDANIQRLNYSLDIANAAG 251 S+ +R+++ + E A+ ++ +L A + RL + +A Sbjct: 196 SSISELRDRIALLGGRLSEMEARLAALIRDNELDDTSLGDELRAELGRLTSIMSLAGDQN 255 Query: 252 IKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVA-ELNGELRNRQYLVEQLTK 310 + + + +E + E + + L+ +L Q LVE+ Sbjct: 256 ASSIRVNEAELRLAEV-------EKKLEERTRAELTQSKLQRSLDADLARYQALVERRNA 308 Query: 311 AHVNDVNFTP-FKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASR 366 P + S P+K P + I+ L G +V VLLR R Sbjct: 309 LETQVDFLQPDARQVTVASAPLKPATPNRIAILALGLAGGLIVGLAFVLLRELFDRR 365 >UniRef50_Q0FE97 OtnB protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FE97_9RHOB Length = 310 Score = 51.3 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 58/189 (30%), Gaps = 5/189 (2%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQE-L 82 +EIDL +L S LWR K ++ V +K+T + P + L Sbjct: 10 RDEIDLKDLFSALWRGKIFIILVSIVSVFFASFHLQSAERKYTIEYNLKPVGETKTSPSL 69 Query: 83 EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLK---EAKIDEL 139 + + + N+F SV + E + + D A ++ Sbjct: 70 SGLGGFASIAGIQLPTSSNNDLNIFKSLITSVEVAEIIFENKKIIKDIFSSEWNASLNNY 129 Query: 140 DLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL-SFTAPTSEEAQTVLSGYIDYISTL 198 + A + + K L F + + +G++ + S Sbjct: 130 SRRQKTKAQTLVGNVKELLTGNKAANYVPPNPRRLAIFITQNVQINEEKETGFLKFTSET 189 Query: 199 VVKESLENV 207 + + ++ Sbjct: 190 SKPDLILSL 198 >UniRef50_A4VKD6 Tyrosine-protein kinase n=9 Tax=cellular organisms RepID=A4VKD6_PSEU5 Length = 736 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 79/234 (33%), Gaps = 19/234 (8%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVV-TPPEPV 77 L ++N IDL ++ + K ++A+ F G+L + I + + A++ P+ Sbjct: 9 LEYDADNRIDLAGIMRTAYDHKALIIAITGLFTVLGVLYALIATPIYQATAMIQIEPKKA 68 Query: 78 QWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYV------MDQL 131 + + + + + ++V L+ Y+ + P Sbjct: 69 AITGIPEISPRPD--SVSQAVTEISLLKSRAVLGKAVEELKLYIVAKPRQFPLIGGYMAR 126 Query: 132 KEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTS-------EEA 184 + + L + + L+ + + D P Y L+ A T+ +E Sbjct: 127 QHDPATDGALAKPLFGLTAFAWGGEKLDVFQLDVPEAYLGMDLTLVAGTAGNYSLYDDEE 186 Query: 185 QTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQ 238 Q +L G ++ V + + +LE + E + T ++ Sbjct: 187 QLILRG---QVNQAVETQGFKVQIAELEARPGTEFRLVRNRPQTTALDYQDRLK 237 >UniRef50_Q489D4 Tyrosine-protein kinase n=7 Tax=Gammaproteobacteria RepID=Q489D4_COLP3 Length = 759 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%) Query: 6 IKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKW 65 +K + + NEIDL+ L L K ++++ FA G+ I+ + Sbjct: 8 VKPTVRNQQGNNTSNNAPANEIDLMALFGALIDRKIFIVSITTLFAVIGIAIAIFSTPIY 67 Query: 66 TSAAVV 71 + A++ Sbjct: 68 KATAMI 73 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 49/326 (15%), Positives = 114/326 (34%), Gaps = 14/326 (4%) Query: 56 LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVS 115 + F +PQ + Q +L K+ L K+ + + F +++ Sbjct: 167 VFRFDVPQYGIDKEYIIQASDNQSFKLLSEDGKVI---LHGKVGEELSNDRFSITLKTLV 223 Query: 116 LL--EEYLRSS----PYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLY 169 E++ + ++D E IV LS + + + +Y Sbjct: 224 ARAGTEFIVTRKDRLNTIVDLQTAIGASEKGKDSGIVNLSFQHETPEYAEGVLNKTAEIY 283 Query: 170 TSWTLSFTAPTSEEAQTVLSGYIDYISTL--VVKESLENVRNKLE-IKTQFEKEKLAQDR 226 + + ++++ L + I + + + + + E + + + Sbjct: 284 VLRNVDRNSAEAKKSLDFLEVQLPEIKKQLESSEALFNDYQRDQQSVNITLETQGVLEQI 343 Query: 227 IKTKNQLD-ANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIE 285 ++ +L +++RL S + + +AV+ D ++ E + ++ Sbjct: 344 VELDTKLQELDLKRLAMSRMFKRNHPNYQGIVEQIEAVQKQRDGLAGKISNLPEMQQKLL 403 Query: 286 KAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILS 345 + DV N V++L V + +K P KA+IV+++ Sbjct: 404 RLTRDVEVGNEIYMMLLGKVQELDIVRAGTVGNVRIIDVAEVNT-IKPVKPKKALIVVMA 462 Query: 346 ALIGGMVACGGVLLRYAMASRKQDAM 371 L+GGM+A VL++ A+ +D Sbjct: 463 TLVGGMLAIAIVLVQKALHKGVEDPS 488 >UniRef50_B8GTU6 Putative uncharacterized protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTU6_THISH Length = 411 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 64/400 (16%), Positives = 141/400 (35%), Gaps = 60/400 (15%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWT--SAAVV----TP 73 A ++EI L++L L R + + V G++ + P + S + T Sbjct: 24 AYYPDDEISLIDLWRTLVRRRSIIGFTVVGSLVLGIMFLIVKPDTYVFGSTIEIGHYPTE 83 Query: 74 PEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKE 133 + L+ L L + + + + + R S V+ ++K Sbjct: 84 AGSRELASLDTVENALSKLQDGYIPEALRRYMDEGHEESRLRVTARNPRGSNLVVIEVKG 143 Query: 134 AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYID 193 + + R + S ++ ++ E+A+ L+ Y D Sbjct: 144 TLDEGESILRVLNYASNQLI----------EDHRYLLDIQRQQLDSRLEQARLELAKYED 193 Query: 194 YISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL--------NYSLD 245 + + LE VR K + + Q+ ++++ + ++QRL +S++ Sbjct: 194 --ERMFRIQELERVRAIERTKLELSELLQQQELVESRIKRLDDMQRLLEQQIKEIRHSIE 251 Query: 246 IANA------AGIKKPVYSNGQAVKD-------------DPDFSISLGA--DGIERKLE- 283 +A+ A + P + + D D I L D ++++L+ Sbjct: 252 VASETRRAAVANVGDPANAMTLLMIDSDIQQNRNRLATLDERLHIGLPNEFDELQKRLDD 311 Query: 284 IEKAVTDVAE----LNGELRNRQYLVEQLTKAHVNDVNFTPFK--------YQLSPSLPV 331 I +A +++ EL + E+ T+A V + P+ + Sbjct: 312 ILRAQSNMKTEIEARESELERFRIDWERSTEAQRQTVRAVEARLNAARDTRVVTQPARSL 371 Query: 332 KKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAM 371 + +GPGK+II+ LS +G M+ + + +++ Sbjct: 372 EPEGPGKSIILALSLFLGLMLGVFAAFFAEFLRNAREETA 411 >UniRef50_C9RR06 Lipopolysaccharide biosynthesis protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RR06_FIBSS Length = 399 Score = 50.6 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 62/384 (16%), Positives = 126/384 (32%), Gaps = 46/384 (11%) Query: 26 EIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKS 85 EI L L + L K V+ A +++ +++ K+ ++A+VTPP Q + Sbjct: 11 EICLRILNNDLKHFKFVAAMVIIPTIIAFVMVMWVVKPKYAASAIVTPP--ASTQPMSGM 68 Query: 86 FTKLRVL--------------DLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQL 131 + L D++ ++ L L + Y + D L Sbjct: 69 LSGLMGSSGMSSLLGISMDNEDVNAVWTILNSWELHNMVIDKFDLAKHYKFKGKFHADLL 128 Query: 132 KE------AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQ 185 KE ++++ ++ ++ AVD S + ++ + E Q Sbjct: 129 KEFRKNFGLELNKEEMLSIYFKDTDAKLAVDVLNFMLDKADSSFNAFKTKQARQSREYFQ 188 Query: 186 -----------TVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLD 234 ++L ++D+ V E +LE ++ E A Sbjct: 189 TRLDSCYHTLDSLLGEFVDF---QVKNNVYEP-NVQLEATIKYLSELQAMREEVNMELNF 244 Query: 235 ANIQRLNYSLDIANAAG-IKKPVYSNGQAVKD--DPDFSISL-GADGIERKLEIEKAVTD 290 + R S + IK + G A+K I L + + + +A Sbjct: 245 EKLDRGENSKRYQELSKRIKGVNSALGGALKGKHSNIGMIELKKSPELYAEYLRREAEIR 304 Query: 291 VAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGG 350 + E ++ +Q +L +A T P KK P + +I+ + Sbjct: 305 IQEAMYKVLRQQSEQMRLEEAK----TLTNLHVLEPPWQNDKKISPKRGLILAFTVFFSF 360 Query: 351 MVACGG-VLLRYAMASRKQDAMMA 373 +A L+ Y + + ++ A Sbjct: 361 FLATLLSNLVEYMRSESRTNSKTA 384 >UniRef50_A1WX76 Lipopolysaccharide biosynthesis n=3 Tax=Ectothiorhodospiraceae RepID=A1WX76_HALHL Length = 514 Score = 50.6 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 75/209 (35%), Gaps = 26/209 (12%) Query: 33 ISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL 92 + WR + ++ + + G LP + +++ V + + + L Sbjct: 15 LRATWRRRWWILPIAWLVCIPGWAYIHALPDTYEASSEV-------YVDTDSVLGPLLGG 67 Query: 93 DLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKM 152 + ++ D + N+ S L E R + + + D+ RA+ +L Sbjct: 68 -MTVRPDAEQRMNMITSTLLSRDNLREIARQADL------DILLGYDDIDRAVDSLQ--- 117 Query: 153 KAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLE 212 D + + + +T+SF+ E A V+ L ++ L + R L Sbjct: 118 ---DIDLRGGDESGAGDNIYTISFSDEDPEVAYRVVRQ----TGDLFMERGLGDPRTDLT 170 Query: 213 IKTQFEKEKLAQ--DRIKTKNQLDANIQR 239 F + +L + R++ K + + +R Sbjct: 171 ASRDFIENQLDRYGTRLRAKEEQLEDFRR 199 >UniRef50_A3SUA0 Putative uncharacterized protein n=3 Tax=Rhodobacteraceae RepID=A3SUA0_9RHOB Length = 712 Score = 50.6 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 48/287 (16%), Positives = 95/287 (33%), Gaps = 36/287 (12%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISF-ILPQKWTSAAVVTPPEPVQWQEL 82 ++ IDL LI LWR K + AV F ++ + + S AVV Sbjct: 19 DDTIDLGALIGTLWRGKLIIAAVTLIFMLLAGYYAYGVAVPTYRSTAVVVLDTKE----- 73 Query: 83 EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLH 142 D +D F ++ E L+S L +D L+ Sbjct: 74 ------------DSIVDLQAVVGGFSGDSTEINTEIEVLKS-----RGLAGKVVDRLN-- 114 Query: 143 RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKE 202 ++A E + + + + + + + L+ + P+ E +T L V Sbjct: 115 --LIADPEFNGRLREPSMRSRVISGIRS--LLTSSTPSPEVPETELHR------AKVRDS 164 Query: 203 SLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQA 262 ++++ NK+ + + A I L I N +K Sbjct: 165 VIQSLLNKVSVSNIRQSLVFNVTAETESPVKSAQIANTIVELYILNQIEVKFEATEKATE 224 Query: 263 VKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLT 309 + + + + E+K+ A T + + G L+ + +++L Sbjct: 225 WLSNRVSELQIELENAEKKVSEFTARTQLVSIEG-LQALERQIKELR 270 >UniRef50_B2IJA7 Capsular exopolysaccharide family n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IJA7_BEII9 Length = 739 Score = 50.6 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 44/335 (13%), Positives = 101/335 (30%), Gaps = 28/335 (8%) Query: 52 CAGLLISFILPQKWTSAAVV----TPPEPVQWQELEKSFTKLRVLDLDI--KIDRTEAFN 105 C + SF + TS + T T + + + N Sbjct: 133 CIAYITSFFSKPRLTSETKIDYKITQALLRNLIVKRVGLTDVIEITYTSLDPDKSAQIAN 192 Query: 106 LFIKKFQSVSLLEEY---LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKK 162 + L ++ R+ ++ D++KE ++ A+ E+ VD + Sbjct: 193 AIADSYIISDLDAKFEATRRTGEWLQDRIKELRMQSAAADEAVRKFKEENNLVDTSRGLI 252 Query: 163 KDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKL 222 + + L + EA+ L D+ + + + +++ + + + + Sbjct: 253 SQQQLTDLNTQLIAARTLTAEAKAKLDALQDWNGNVTNSKISDALKSDVISRLRAQYLDF 312 Query: 223 AQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDD--PDFSIS-------- 272 + + N+ A+ L I K + + + D+ I+ Sbjct: 313 SAKESEWANRYGAD--HLAAVRLRDQMHEISKSISLELNRITETYKSDYKIASAREGAIE 370 Query: 273 --LGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPF-----KYQL 325 L +E KA + L + + L + + + F + Sbjct: 371 KSLNQLALEAAGTTSKAQLQLRVLESTAQTYRTLHDNFLQRSMEATQQQTFPVSEARIIT 430 Query: 326 SPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR 360 P +K P +I+ + IG + V +R Sbjct: 431 KADTPERKSSPKTLLILSGATFIGCFLGVFAVFVR 465 >UniRef50_Q5LEP2 Conserved hypothetical membrane protein n=13 Tax=Bacteroidales RepID=Q5LEP2_BACFN Length = 370 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 58/379 (15%), Positives = 124/379 (32%), Gaps = 42/379 (11%) Query: 16 DYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPE 75 + EIDL+ L +W +K V+ V GL+++F +P+++ S +V PE Sbjct: 8 NKTTPQSEEQEIDLIELAQKVWAGRKLVLKVCGVAVLVGLVVAFSIPKEY-STSVTLAPE 66 Query: 76 PVQWQEL--EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKE 133 + + ++L S L + + S+P++++ Sbjct: 67 TGSKSSTGGRGALAAMAGINLGSSTGEDAL---------SPELYPDIVSSTPFLLEMFDV 117 Query: 134 AKIDELDL-HRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSG-- 190 D+ + + +K + + W +S EE Sbjct: 118 KVADQKGKINTTLYEYLDKYQRAPWWGAVASAPFKALG-WVVSLFKDAPEEQGDAKIDPF 176 Query: 191 YIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQ----------RL 240 Y+ + + ++ KT + L + R Sbjct: 177 YLTADQAGIADALSHRISVSVDKKTGVTTLTVTMQDPLISAALTDTVMHCLQNYITDYRT 236 Query: 241 NYSL-DIA------NAAGIKKPVYSNGQAVKDDPDFSISLGA-DGIERKLEIEKAVTDVA 292 N + D+A N A A D + +I + + + +L+ E Sbjct: 237 NKARHDLAFTEKLFNEAQENYYEAQQKYARFMDGNQNIIMQSFRTEQERLQNEMN----- 291 Query: 293 ELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMV 352 L + + QL KA V ++ + ++P++ P K +I+I + G+ Sbjct: 292 -LAYGVFTQVSQQLQLAKAKVQEIT-PVYTVVQPATVPLRPAKPNKIMILIGFVFLAGVG 349 Query: 353 ACGGVL-LRYAMASRKQDA 370 + G +L ++ + K+ Sbjct: 350 SIGWILFVKDLLNGWKKQP 368 >UniRef50_B3ELK8 Lipopolysaccharide biosynthesis protein n=1 Tax=Chlorobium phaeobacteroides BS1 RepID=B3ELK8_CHLPB Length = 334 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 53/367 (14%), Positives = 114/367 (31%), Gaps = 61/367 (16%) Query: 1 MSSLNIKQGSDA-HFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISF 59 M + N+++ S + P+ E L ++ +V+ + V+ V + L + Sbjct: 10 MKNQNMRESSKSGRDSSQPVQGEKGVETSLDDIRAVIVSNRWIVVGVTLFVTLSAALYAL 69 Query: 60 ILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEE 119 + + A+V D K F L + F + +E Sbjct: 70 FAQPVYLTGALV---------------------RFDGKEGDRALFMLHSQTFLEDIIRKE 108 Query: 120 ------YLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT 173 + V K + D + V L+EK+ K L+ Sbjct: 109 ELLPLLFSDQWDSVHHSWASGKGEIPDPEKGAVVLAEKLII--------KKRKDLFNLLF 160 Query: 174 LSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQL 233 + P A +++ + ++ V KE+L + + + + Sbjct: 161 IGMEHPDPYAAADLINRVLIGLNEYVRKEALAKALLLQAYADRQLYIHDSTLADRFASLG 220 Query: 234 DANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAE 293 +A+ RL+ G +K ++ S SL A +L +K +D Sbjct: 221 EADAVRLS------GKNGDRKAASEVSGFLRSQLILSSSLEA---RARLMAKKQESDDVI 271 Query: 294 LNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVA 353 + ++ ++ ++ A + N PGK+ +++L + G Sbjct: 272 MRADIHADEFALKIYDMATAYEKNA----------------KPGKSAVIVLGFIFGMFSG 315 Query: 354 CGGVLLR 360 +R Sbjct: 316 LCIAFVR 322 >UniRef50_C7H2L1 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H2L1_9FIRM Length = 494 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 56/362 (15%), Positives = 123/362 (33%), Gaps = 46/362 (12%) Query: 17 YPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLIS--------FILPQKWTSA 68 YP + EIDL+ L+ L K ++ A ++ + + + Sbjct: 8 YPTGAQDEEEIDLVALMVTLLHKLKPILLTAVVCAVIAGGLAGVKILRGGAVSAEDQVAY 67 Query: 69 AVVTPPEPVQWQELEKSFT---KLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSP 125 ++Q+ +K + + L D + +K+ + E+ L + Sbjct: 68 EE----ALAEYQQKKKDYEFAVQQYELTAKSNEDAQSSVQEALKQ--AQDYAEKSLLKNL 121 Query: 126 YVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQ 185 V + + K++ + L + + A Sbjct: 122 DVYNVW-------TAQADLYIDSGYKIQPGSAYQNVDPTGALLAAYQKQLVSGDSMNAAA 174 Query: 186 TVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLD 245 + + Y+ +V E +N + + A D+ + L+ + RL+ D Sbjct: 175 DAVGVDVRYLKGVVTVELSQNDSGEYNG--VMTLQAYAADQQTAEKILNVLLGRLDLIHD 232 Query: 246 IANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLV 305 A AA V S+ V D G+ +L + +D +++N Q + Sbjct: 233 KAAAA-----VCSHSVRVIDQSV------TQGVSTELRALQQTSD-----EDVQNLQSQL 276 Query: 306 EQLTKAH--VNDVNFTPFKYQLSPSLPVKKDGPGKAII--VILSALIGGMVACGGVLLRY 361 +L A ++D + S P G ++ +++ L+GG++ACG V++++ Sbjct: 277 VELQSARQALDDNLASAKSTWESAEEPALGGGAASSVAKYLLIGFLLGGVLACGVVVVKF 336 Query: 362 AM 363 + Sbjct: 337 LL 338 >UniRef50_Q84GX2 Orf41 n=3 Tax=Photorhabdus RepID=Q84GX2_PHOLU Length = 715 Score = 49.8 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 1/105 (0%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE 83 ++EIDL L+S L+ + + + F GL S I + + +++ + + L Sbjct: 14 SDEIDLGRLLSALFDYRWVIGGITLLFTVIGLCYSLIATPIYKANSLLQVEKRSRVLPLI 73 Query: 84 KSFTK-LRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYV 127 L D + + I L + ++ Y Sbjct: 74 GDMADMLSGRPSDTSAELELLTSRMILGKTVKDLNLDVQVTADYF 118 Score = 44.0 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 66/182 (36%), Gaps = 16/182 (8%) Query: 184 AQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYS 243 ++ +L+ Y + + + ++ LE Q EK+ + + Q Q Y Sbjct: 285 SEELLNQY-RQANESI--DLSLEAKSALETLVQIEKQINELTFKEAELQQLYTKQHPAYV 341 Query: 244 LDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQY 303 + + Q++K P + L + + V E+ +L N+Q Sbjct: 342 ALLDKRKTLVDTKKELNQSIKRLP--------KTQQEILRLTRDVQVGQEIYVQLLNKQQ 393 Query: 304 LVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAM 363 + L V +V + ++ P K++I++ ++G +++ G V +R Sbjct: 394 ELNILKAGTVGNVRIIDEAIVENSAV-----KPKKSLIIVSMMVLGFILSAGLVCIRVMF 448 Query: 364 AS 365 Sbjct: 449 RK 450 >UniRef50_Q13NU9 Exopolysaccharide transport protein n=1 Tax=Burkholderia xenovorans LB400 RepID=Q13NU9_BURXL Length = 746 Score = 49.8 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 51/348 (14%), Positives = 105/348 (30%), Gaps = 39/348 (11%) Query: 26 EIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQW--QELE 83 ++D ++ W+ K T+ A S++L +S VV + + ++ Sbjct: 160 QVDQFDVPKTYWKKKFTL--------VATGRDSYVLK---SSGDVVLEGKLNRVARGRVD 208 Query: 84 KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY-LRSSPYVMDQLKEAKIDELDLH 142 L V L + + L E+ + L Sbjct: 209 DGEVTLLVSRLAARPGTEFILRRSSELQAVEDLQEDLKIEEKGKQSGILSVTLNGPNPKK 268 Query: 143 RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLS----GYIDYISTL 198 + + + V N + K E T+ F + ++ L Y + + Sbjct: 269 TKSILDAVANEYVTQNVALKSAEAQQ----TIEFLDRQLPQLKSQLDDAEVKYNRFRNEK 324 Query: 199 VVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNY-SLDIANAAGIKKPVY 257 E + L+ L + + + + + + +LD K+ V Sbjct: 325 GTVNLSEEAKLILQQSVDSNTALLELQQRRLELRQRFTEEHPSVVALD-------KQIVA 377 Query: 258 SNGQAVKDDPDFSISLGADGIER-KLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDV 316 + Q S G +E+ L + + V +L L N + L V +V Sbjct: 378 AKSQTESLGSRIS---GLPNLEQGALRLMRDVAVDTDLYTGLLNSAQQLRVLKAGKVGNV 434 Query: 317 NFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMA 364 F P+ P KA+++ + ++G + +R A Sbjct: 435 RVVDFA--QDSEEPI---KPKKALVIAMGVVLGAIFGVTTAFVRKAFF 477 Score = 40.5 bits (93), Expect = 0.087, Method: Composition-based stats. Identities = 11/90 (12%), Positives = 34/90 (37%), Gaps = 1/90 (1%) Query: 12 AHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVV 71 A+ P P A+ +N+++ + +S+++ + + ++ ++ +F + + ++ Sbjct: 3 ANLPASPDATRANDDVSFADYLSLIYEGRWLIAGIMAFVIALSVIYAFGARPIYDAN-IL 61 Query: 72 TPPEPVQWQELEKSFTKLRVLDLDIKIDRT 101 E E +LD Sbjct: 62 IQVEDSDLSEKNLLGDLAPLLDAKSATTAE 91 >UniRef50_Q65SG7 GumC protein n=2 Tax=Pasteurellaceae RepID=Q65SG7_MANSM Length = 703 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 82/235 (34%), Gaps = 18/235 (7%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ 78 ++ N+ IDL L+ + W K+ ++ A GL+ S + P + + + V Sbjct: 1 MSKKQNDVIDLTKLLGLFWDQKRIILLSTLLCAGLGLVYSLLAPSIYMATSSV------- 53 Query: 79 WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 ++E+ +T + L ++ I +S + S V D ++ Sbjct: 54 --QVEEKYTGGALQGLSSIFEQESTAGTEIAVIKSRA------IVSKAVEDLNLTTEVSP 105 Query: 139 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 198 + EK+ + + P + + ++E +VL + Sbjct: 106 VYPIPFFSKAVEKLMGDKPEITVARFVPKREDAQEYTLVIGSNENEYSVLDEQKQLVLNG 165 Query: 199 VVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIK 253 VV E +N +EI K + R K +++ L +L A A K Sbjct: 166 VVGEKYDN--QDIEILVSQLKGS-SGKRFSLKKMEKSDVLELVEALQKAVTADEK 217 Score = 41.7 bits (96), Expect = 0.039, Method: Composition-based stats. Identities = 41/298 (13%), Positives = 96/298 (32%), Gaps = 31/298 (10%) Query: 75 EPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEA 134 + + L +K ++ Q +E + + + K Sbjct: 172 DNQDIEILVSQLKGSSGKRFSLKKMEKSDVLELVEALQKAVTADEKGKQTGVIELTFK-- 229 Query: 135 KIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDY 194 D + + + ++++ + + S LSF E + L+ Sbjct: 230 GEDPEYIQKVLHSITQSYLEHSTARNSAEASNS------LSFLQKRLPEVRDRLT----- 278 Query: 195 ISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKK 254 E E + K + + E + + ++ + L+ +L I + ++ Sbjct: 279 ---KSENELNEYRQKKASVDLELEAKSVLDTLVQLDSNLN--------ALTIRESEISQR 327 Query: 255 PVYSNGQAVKDDPDFSISLGADG-IERKLEIE-KAVTDVAELNGELRNRQYLVEQLTK-- 310 + V + L + ++LE + D L Q + QL+ Sbjct: 328 FTKRHPNYVALLEQRQVLLDEKARLTKQLESLPETQKDTVRLTRNFEVDQQIYTQLSNKI 387 Query: 311 AHVNDVNFTPF---KYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 ++ V + K P K II++L+A++G ++ GGV+L+ + + Sbjct: 388 QELDVVKAGAVGNVRILDEAQTLPKPVAPRKLIILVLTAIVGFLLGSGGVILKSILQN 445 >UniRef50_Q21Z35 Lipopolysaccharide biosynthesis n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21Z35_RHOFD Length = 388 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 52/381 (13%), Positives = 116/381 (30%), Gaps = 46/381 (12%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE 83 ++EI LL+L+ V+ + ++ L ISF + +T+ PP+ Q Sbjct: 11 DDEISLLDLLQVVADNLRLLVLAPLTAGLLALGISFAIAPTFTATTKFMPPQQQQSAAAS 70 Query: 84 KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHR 143 + + L + +L+S + K+ E + Sbjct: 71 MLSSLGALGGLAGAATGLK---------NPADQYVAFLKSRSVQDVLIDRFKLMERYESK 121 Query: 144 AIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKES 203 ++ V AS K T+ A + + Y++ + L+ + + Sbjct: 122 LKTDARTTLEGVSKIASGKD------GLITIDVDDKDPAFAAQLANAYVEELGRLLDRLA 175 Query: 204 LENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAV 263 + + + + FEK+ K + +N S+ + A ++ Q Sbjct: 176 VTEAQ---QRRVFFEKQLTNAKDNLIKAEQALGASGVNSSVLKSTGAAVEAVARLRAQIT 232 Query: 264 KDDPDFSISLGA---------------DGIERKLEIEKAVTDVAE------------LNG 296 + + G + +L + + Sbjct: 233 GQEVKLASMRGYLTESAPDFKQAQTELSALRGQLARAEQSEPATDSASSDYIAKFRDFKY 292 Query: 297 ELRNRQYLVEQLTKAHVNDV-NFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACG 355 + +Q A +++ + + P +K P KA+I +++ L G Sbjct: 293 YETLFELFAKQYEMARIDESREGAVIQVLDAAQPPERKSKPKKALIALMTTLAVGFALLL 352 Query: 356 GVLLRYAMASRKQDAMMADHL 376 V +R A+ Q A+ + Sbjct: 353 FVFIRQALRGAAQTPESAEKI 373 >UniRef50_A3V6B4 Putative uncharacterized protein n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V6B4_9RHOB Length = 712 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 33/243 (13%), Positives = 90/243 (37%), Gaps = 24/243 (9%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 M++ +I +G +++ID+ I VL R + ++ V + ++ F Sbjct: 1 MTNQDIPRG--------------DDQIDISAFIGVLRRQYRVIVMSVASIIVLAVIYLFA 46 Query: 61 LPQKWTSAAVV-TPPEPVQWQELEKSFTKLRVLDLDI-----KIDRTEAFNLFIKKFQSV 114 + K+T+ A+V P E S + + + ++ I + + Sbjct: 47 VTPKYTATALVSIEPNRGVLSEDVASQNNSAAISAQVEGEVAILKSSDVLLALIAEAN-L 105 Query: 115 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 174 E+ + + I+ A A+++ ++ V D + ++ + + Sbjct: 106 VSDPEFGVTVSRSAQVMAWLGIETDTTREAGAAVTDILRRVGDAVAVRRRGLTYLVE--V 163 Query: 175 SFTAPTSEEAQTVLSGYID-YISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQL 233 S T+ E A + + + Y + V + + + ++ + + + + +R++T+ Sbjct: 164 SVTSQDPERAAELANLLVSIYTTRQVENKIRQILASRDILAPRIDNAQAELERLQTEADR 223 Query: 234 DAN 236 Sbjct: 224 FLE 226 >UniRef50_A4AB87 Chain length determinant protein n=2 Tax=unclassified Gammaproteobacteria RepID=A4AB87_9GAMM Length = 316 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 34/244 (13%), Positives = 79/244 (32%), Gaps = 25/244 (10%) Query: 27 IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQEL---- 82 +DL+ ++ L RAK ++ A A +SF P + + A V+ + + Sbjct: 18 LDLMPFVNALLRAKWLLLIAFIAGASLAAWLSFTTPYTYVAGAKVSIVDIEDPGGVSPDD 77 Query: 83 EKSFTKLRVLD--LDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQL-----KEAK 135 ++ L +++ + R + + + +S S +L + +E + Sbjct: 78 RRASEVLTLVEHGFVMGTTRDNYSEVMMARLRSRSFTLHFLETHNIYRHFYPAKWSEETQ 137 Query: 136 IDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 195 E + + + + ++ + T+S P + + Y+ Sbjct: 138 SWEEGFTPDVGESFTRFRDEIRMITVDEETDIV----TVSMRWPEPTVPRDWANLYVQTF 193 Query: 196 STLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQ---------RLNYSLDI 246 + + + E V K ++ I+ Q R Y L+I Sbjct: 194 NEYMRNRTQEEVLRKQAFLEDTLRKS-DVVEIQKSIYRLIEAQTAIMMLANAREEYVLEI 252 Query: 247 ANAA 250 + A Sbjct: 253 IDPA 256 >UniRef50_B5S582 Putative tyrosine-protein kinase epsb , polysaccharide export protein epsb (Partial sequence) (Fragment) n=1 Tax=Ralstonia solanacearum RepID=B5S582_RALSO Length = 727 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 46/307 (14%), Positives = 98/307 (31%), Gaps = 21/307 (6%) Query: 15 PDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVV-TP 73 P P + NE+DL+ + VL + + + A G +F+ + + +V Sbjct: 6 PQPPAVNAPENELDLVRYLDVLVANRWLIAGIAAAVMLLGAAYAFLARPVYEADIMVQVE 65 Query: 74 PEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLK- 132 P + L + L + D + + + ++V L Y+ + P+ + Sbjct: 66 DNPNSAKSLLGDVSSLFDVKTDANAEIEILRSRMVVG-KAVDNLHLYITAKPHYFPLIGA 124 Query: 133 --EAKIDELDLHRAI----VALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQT 186 ++ L + VD + E + L Sbjct: 125 WISSRATRLSEPGLFGLGGYVWGTETIDVDGFDVPEALEGQPFKLIVLG------NGRYR 178 Query: 187 VLSGYIDYISTLVVKESLENVRN--KLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSL 244 + + +D VV E LE ++ ++++ K ++ ++ L L Sbjct: 179 LENKSLDAPIEGVVGEPLEAKQSIGTIQLQVNNLTAKAGATFELERDSRLKTMEMLQDKL 238 Query: 245 DIA---NAAGIKKPVYSNGQAVKDDPDFS-ISLGADGIERKLEIEKAVTDVAELNGELRN 300 IA +GI + I+ K + E+A + L+G L Sbjct: 239 KIAEKGKQSGIIGASLDGTNPALTAAIMNQIATEYVAQNIKRKAEEAERSLVFLDGLLPQ 298 Query: 301 RQYLVEQ 307 + +E+ Sbjct: 299 LKLELER 305 >UniRef50_Q72WQ0 Chain length determinant family protein n=4 Tax=Desulfovibrio vulgaris RepID=Q72WQ0_DESVH Length = 500 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 62/189 (32%), Gaps = 21/189 (11%) Query: 179 PTSEEAQT-VLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANI 237 E A +L Y +V ++ + K + RIK + + I Sbjct: 256 AEKEAAYKALLGTYTAQHPDVVRAKAELDALRASGGGGGGRKGGVDYQRIKVELESLNEI 315 Query: 238 QRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGE 297 +R+ L ++ D L ++ +L+ + L E Sbjct: 316 ERIQQEL------------------IEKDKRLLQEL--PAVQTELQALQQARKNETLIYE 355 Query: 298 LRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGV 357 +Y +++K + LP++ P + +I++ L+GG + G V Sbjct: 356 QLVTRYGQSEVSKQMELQDKAVSLRIIDPAILPIRPSTPNRPLIMLAGLLLGGAIGAGWV 415 Query: 358 LLRYAMASR 366 +L + + Sbjct: 416 ILSDQLFRK 424 >UniRef50_Q7U940 Putative uncharacterized protein n=1 Tax=Synechococcus sp. WH 8102 RepID=Q7U940_SYNPX Length = 561 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 37/246 (15%), Positives = 85/246 (34%), Gaps = 27/246 (10%) Query: 12 AHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWT-SAAV 70 + N+EIDL + + L R + + A + +F W S + Sbjct: 4 SPSQTLQPQQLDNDEIDLRQVAAALKRQWLLIGGITAATVLLSGIYAFTRKPVWEGSFQI 63 Query: 71 VTPPEPVQWQELEK--SFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVM 128 V + V L K + + + + +K +S S+L + +V Sbjct: 64 VLENQDVGGGRLAKLAAANPMLAGLAGVSAGESSLVTE-VKILESPSVLR---PTYDFVK 119 Query: 129 DQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVL 188 A D +++ ++++ K LS T ++E ++ Sbjct: 120 ASKAAAGADVSK-----WVITDWTRSLEIELVKGTS--------VLSLTYRDTDE--DLI 164 Query: 189 SGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIAN 248 ++ I+ + S ++ R L + ++++ + R ++ + R + +AN Sbjct: 165 LPVLERITRTYQEYSGKDRRRGLTQGVAYLEQEIDKLRQQSATSM-----RTAQAYALAN 219 Query: 249 AAGIKK 254 GI+ Sbjct: 220 GLGIQD 225 >UniRef50_A3K8W6 Chain length determinant protein, putative n=3 Tax=Rhodobacteraceae RepID=A3K8W6_9RHOB Length = 442 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 48/380 (12%), Positives = 116/380 (30%), Gaps = 56/380 (14%) Query: 31 NLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLR 90 + + L R ++ + + + + + + + AVV Q + T Sbjct: 9 EVFAALRRRAWVILGIFLVGCVISVDYALMQQKVYEATAVV--------QIEDARVTSTA 60 Query: 91 VLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSE 150 + + L ++ S L + D E ++ + Sbjct: 61 TGTAADANEASRRLQLIEQRLMSRDNLVSLMDK----YDLFAEDPALNDGERIYMMRQAA 116 Query: 151 KMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNK 210 ++ + + +S P E+A V + + + S E + Sbjct: 117 RITPITRPGPTFSAAAQAPSGLMISVMLPDPEKAAVVANDLMTKVIAESRDRSAE--QAS 174 Query: 211 LEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFS 270 + +E I A+ ++ N + A A ++ + + + D Sbjct: 175 ETLAFYQTEEARVDAEIVALEDRIADYKKANSAQLPAGVAALRTELTTLRETELDLSQEI 234 Query: 271 ISLGAD-------GIERKL---------------EIEKAVTDVAELNGELRNRQYLVEQL 308 I++ D + R++ EIE + E+ +L + +++L Sbjct: 235 ITIQGDTARKRPEDLARQVAQLEDQRALVAARATEIEGQIASAPEVERQLGQLEREMDRL 294 Query: 309 T----------------KAHVNDVNFTPFKYQLS---PSLPVKKDGPGKAIIVILSALI- 348 +A + ++ + P PV A + +++LI Sbjct: 295 KDQYSVITRGKAEAEMGQALQDRQAAGRYEVLETALVPDDPVTSSRKKIAGMGAVASLIA 354 Query: 349 GGMVACGGVLLRYAMASRKQ 368 G +VA ++ A+ ++KQ Sbjct: 355 GLIVALVFEIMNPAIRTQKQ 374 >UniRef50_C1F294 Chain length determinant family protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F294_ACIC5 Length = 759 Score = 49.0 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 43/346 (12%), Positives = 97/346 (28%), Gaps = 50/346 (14%) Query: 27 IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVT-------------- 72 I+L +L + + K ++ V A L ++ + + V+ Sbjct: 28 INLSDLRKLFLKRKWIILICVLAGIGVALYHVETATPQYEAVSSVSIDMNKSTGVELTSL 87 Query: 73 PPEPVQWQELEKSFTKLRVLDLDIKI-DRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQL 131 Q ++ T+L ++ + + + L+ K S + + +L Sbjct: 88 ASSSGGLQSQDRVETQLHIMQSNTIAWNVIKTLKLYNKPPYSGVFKKAGYHGTVTPSQKL 147 Query: 132 KEAKIDELDLHRAIVALSEKMKAVDDNASKK------KDEPSLYTSWTLSFTAPTSEEAQ 185 + +V ++ + N + K + + Y WTL T Sbjct: 148 ALLNTFKGATQVVLVPETDLAEIHFQNQNPKVAQEAANEIVNAYQDWTLRAHFETMTRIS 207 Query: 186 TVLSGYIDYISTLVVKESLENVRNKLEIKTQF-----------EKEKLAQDRIKTKNQLD 234 LS I + V K + V+ + E E + + + Sbjct: 208 DWLSQQIISLRESVNKSQNDLVQYQREHNLLSVGQQGSSLVDANLETINSQLAQAEADRI 267 Query: 235 ANIQRLNYSL--------DIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERK----- 281 R +L +A + + D G + + Sbjct: 268 VKEARYKMALTRNPDLLVSVAPNTVLTSLRSQEANLLVQQADLQSRFGPRYPKLEEVRQQ 327 Query: 282 -----LEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFK 322 +I K +T++ + + + L +A + + FK Sbjct: 328 LKQVRSDINKEITNLTQRFKAEYDAAVQTQNLLEARLENTKQQAFK 373 >UniRef50_B9JK00 Capsule polysaccharide export transport system permease protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JK00_AGRRK Length = 401 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 44/369 (11%), Positives = 118/369 (31%), Gaps = 48/369 (13%) Query: 41 KTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDR 100 + +V + +FI +++ S P + L R Sbjct: 45 LLLFMLVIPGMLGAIYYAFISAEQYVSETQFVVRSPN-----RNAAGLLSGFLQSTGFVR 99 Query: 101 TEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNAS 160 + + + +F + L + + D + + D L+ + ++ + + Sbjct: 100 AQDDSYIVSEFMMSRAAVDELATKNGLKDIMSRPEADFLNRYPLPWTVANNEELFQHYKN 159 Query: 161 -KKKDEPSLYTSWTLSFTAPTSEEAQTVLS-------GYIDYISTLVVKESLENVRNKLE 212 K D S TL A +E++ ++ + I+ ++ +++ + +L Sbjct: 160 FVKVDTNSSSGVTTLEVYAFRAEDSFSLANALLQHAEELINQLNDRARGDAIRYAQVELT 219 Query: 213 IKTQFEKEKLAQDRI-KTKNQLDANIQRLNYSLD-IANAAGIKKPVYSNGQAVKDDPDFS 270 + + + L ++ +LD IA + S + D Sbjct: 220 DSEGRLQSTQKNLTDFRNRETLIDPTKQSAAALDLIARLSD--DVADSKARLAALDDQAP 277 Query: 271 ISLGADGIERKLEI-EKAVTD---------------VAELNGELRNRQYLVEQ------- 307 S D + ++ E+ V+D +A+ L R+ + Sbjct: 278 QSPQGDALRARVTAMERQVSDERARVVGSDSSMAPRIAQYEQLLLEREMAAKMLASATTS 337 Query: 308 LTKAHVNDVNFTPF-KYQLSPSLPVKKDGPGK--AIIVILSALIGGMVACGGVLLRYAMA 364 L A ++ + + +P+LP P + + ++ L+ + +++++ ++ Sbjct: 338 LENAKIDAQRQQLYLERISNPNLPDHPLYPKRIKSFLMFLA-----ICGAFYMIVQFFVS 392 Query: 365 SRKQDAMMA 373 + A Sbjct: 393 QVLEHAASE 401 >UniRef50_B5CXQ8 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5CXQ8_9BACE Length = 369 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 52/386 (13%), Positives = 122/386 (31%), Gaps = 62/386 (16%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 M N KQ + N I L LI +L+ + + V A G +I F Sbjct: 1 MEEKNKKQQETS--------DEIKNNITLFKLIRILFHNRFKLYKVCGISALIGAVIGFS 52 Query: 61 LPQKWTSAAVVTPPEPVQWQE-LEKSFTKLRVLDLDIKIDRTEA-FNLFIKKFQSVSLLE 118 LP+ + + ++P + L + +++ FN+F Sbjct: 53 LPKTYHAYVSLSPESGMNGASGLSGIASMFGLVNSSTGFGEDALTFNMF----------P 102 Query: 119 EYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTA 178 E ++++PY ++ L+ + + + + P S + Sbjct: 103 EIVKTNPYALEVLQVPIQTQDGKTMLLYDYLD--IEQKPWWTYVTGLPKAAIGGVKSLFS 160 Query: 179 PTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKN--QLDAN 236 + T + + + + ++ + ++ L + N ++ Sbjct: 161 QEKPDTVTTIDPF--------------KLTKEQDMHIKMLQDVLKVETDVKTNMTKVSVA 206 Query: 237 IQRLNYSLDIANAA--GIKKPVY-SNGQAVKDDPDFSISLGADGIERKLEIEKA------ 287 +Q + +A++A +++ + + K D DF ++L + ++ Sbjct: 207 LQDPLAAAIVADSAVYKLQEYITDYRTRKAKQDYDFQLNLCEQYKKEYFAAQQEYAQFAD 266 Query: 288 ------VTDVAELNGELRNRQYLVEQLTKAHVNDVNF---------TPFKYQLSPSLPVK 332 + V L+ L EQ+ + + F ++P+ Sbjct: 267 ANRNVILQTVTSEKERLQKNLSLAEQIYSQSMGQLQVLRGKVQEAKPVFAVVEPATVPLV 326 Query: 333 KDGPGKAIIVILSALIGGMVACGGVL 358 P K +I+I A + + +L Sbjct: 327 PSSPKKMMIIIAFAFLAFIFESAWIL 352 >UniRef50_Q2C5X1 Chain length regulator (Capsular polysaccharide biosynthesis) n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C5X1_9GAMM Length = 718 Score = 48.6 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 60/394 (15%), Positives = 121/394 (30%), Gaps = 60/394 (15%) Query: 17 YPLASPSNNEIDLLNLISVLWRA----KKTVMAVVFAFACAGLLISFILPQKWTSAAVVT 72 + S + EI+++ VL R T+ + G I++ L + Sbjct: 76 FISQSTAKTEIEIIKSRMVLGRTVDNLNLTLYSSPIFTPIIGKKIAYFLGNVPEIKVSLL 135 Query: 73 PPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY--LRSSPYVMDQ 130 + S V D + F+ + + E L + Sbjct: 136 ITPENDNKSSGNSEGNYIVK----ISDDKKGLYDFLNEDNKLIFSGEVGKLENKNGYEIL 191 Query: 131 LKEAKIDELDLHRAIVALSEKMKAVDDNASKKK--DEPSLYTSWTLSFTAPTSEEAQTVL 188 + +K+D + I+ + + S+ + LS + +L Sbjct: 192 I--SKLDGKSGQKFIIKKLNRYNTISSLRSRLSIMEPGKDTGILYLSLKGNNPLRMEAIL 249 Query: 189 SGYIDYISTLVVKESLENVR-NKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIA 247 + +V E +N+ N LE + + K +LD +LN + Sbjct: 250 -------NDIVNNELTQNIDHNALEAAKSLV--FIENQLPEVKRELDIAENKLNTFKVSS 300 Query: 248 NAAGIKKPVYSNGQAVKDDPDFSISLGAD------------------------GIERKLE 283 ++ + S + I LG ++RK+E Sbjct: 301 DSVDMDYQAKSTLNILASVESKLIDLGFKESELSKLYTKEHPAYVALLQQKRSLLKRKVE 360 Query: 284 IEKAVTDVAELNGELRNRQ-----------YLVEQLTKAHVND-VNFTPFKYQLSPSLPV 331 +E V+ + + N + L+ ++ + ++ + S Sbjct: 361 LENEVSTMPKTNQRIITLNRDVMAAQHIYMSLINKVQQLRISQASTVGSVRLIDSAEASP 420 Query: 332 KKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 P KA+IV+L+ L GGM++ VLL+ S Sbjct: 421 IPIKPKKALIVVLATLFGGMLSIVIVLLKKNFIS 454 >UniRef50_B8D183 Lipopolysaccharide biosynthesis protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D183_HALOH Length = 278 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 53/342 (15%), Positives = 97/342 (28%), Gaps = 81/342 (23%) Query: 27 IDLLNLISVLWRAKKTVM-AVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKS 85 IDL I VLW + V+ + A GL F++ + + AV+ S Sbjct: 15 IDLREYIKVLWAGRWLVISLMGIAILLVGLASYFLINPVYETEAVIRLTSTDGIYSRPAS 74 Query: 86 FTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAI 145 +L SP ++ + E E + Sbjct: 75 MARL--------------------------------IKSPSLLKGVMEGVNREYTMSELH 102 Query: 146 VALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLE 205 S +K + + + + A +L G I ++S + Sbjct: 103 TFASNNIKVNHVRET---------SMLEIKVSHTEPRLAFDILEGLI----VKAQEKSDK 149 Query: 206 NVRNKLEIKTQFEKEKLAQDRIKTKNQLDAN--IQRLNYSLDIANAAGIKKPVYSNGQAV 263 R + K + + + + + I++LN + ++K V N Sbjct: 150 YYRKVVNHKETYLQGIITELDEINQRIGSVEEGIEKLNN----RDLPAVEKYVLLNSLDN 205 Query: 264 KDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKY 323 D + G V D L EL + P + Sbjct: 206 NLDSLLTYKRG------------LVKDKNRLERELLTLR-----------------PLEV 236 Query: 324 QLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 SP +P P + V+++ ++G M+ V R M Sbjct: 237 ISSPYVPENPVSPNIKLNVVIAGILGLMMGVFIVFFREFMKE 278 >UniRef50_B1KCB3 Exopolysaccharide transport protein family n=2 Tax=Burkholderia RepID=B1KCB3_BURCC Length = 740 Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 43/300 (14%), Positives = 95/300 (31%), Gaps = 36/300 (12%) Query: 89 LRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY-LRSSPYVMDQLKEAKIDELDLHRAIVA 147 L V + K T + L + + D + + A++ Sbjct: 203 LLVSSVRGKPGATFVLRRYSTLSTIEELRQSLNIAEKGKQSDVIGVTLDGSDPVKTAMIL 262 Query: 148 LSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEE-------AQTVLSGY-IDYISTLV 199 + + V N +K +E ++SF + E ++ + Y + + + Sbjct: 263 NTLGSEYVHQNERRKSEEAE----RSISFLSAQLPELRAQLELSENRFNAYRATHGTLNL 318 Query: 200 VKESLENVRNKLEIKTQFEKEKLAQDRIKTK-NQLDANIQRLNYSLDIANAAGIKKPVYS 258 +E+ ++ ++ +++ K +D + + I+ L+ LD A A Sbjct: 319 DEEATALLQRSVDAQSRLTTLKQKRDELMARFTPEHPAIRALDAQLDTARA--------- 369 Query: 259 NGQAVKDDPDFSISLGADGIER-KLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDV- 316 I + + ++ + DV N EQL V Sbjct: 370 --------EIGGIEQRTRALPPVEQDVLRLQRDVQVGTELYTNLLNTQEQLRLVKAGKVG 421 Query: 317 NFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADHL 376 N P PV+ P + ++++ S + G ++ R M D + +H+ Sbjct: 422 NVRLVDTAAVPEEPVR---PKRLLVIVGSTVFGLLIGATVAFSRRRMFDSIDDPIEVEHV 478 >UniRef50_D2PZ20 Lipopolysaccharide biosynthesis protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PZ20_9ACTO Length = 540 Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 66/222 (29%), Gaps = 20/222 (9%) Query: 34 SVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVV-----TPPEPVQWQELEKSFTK 88 L R K ++ V + S + Q+WT+++ V PP V T Sbjct: 13 QALLRHKWLILGCVLLGIAGAAVFSLVQTQRWTASSQVVIGPAVPPALVGKLPTGADKTG 72 Query: 89 LRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVAL 148 +DL + S +LL +S + + L + A+ Sbjct: 73 PLGMDLPAETQARVM--------SSPALLRSVAKS---LGMPTSDESAQSLASVTRVKAV 121 Query: 149 SEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVR 208 ++ + + + + + A + EA+ +L+ ++ S Sbjct: 122 TDNAYLITIDGPTADEAVRRANAIGRIYLAQRNNEAKALLT----TLAGQAQDRSRTAAA 177 Query: 209 NKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAA 250 + +Q + D D + + A+ A Sbjct: 178 QSRTLVSQISEAIARGDTQTAAALRDQRVGLATEARQAADEA 219 >UniRef50_C3KRX1 CPSC/CAPB subfamily ATPase n=5 Tax=Rhizobiales RepID=C3KRX1_RHISN Length = 633 Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 56/390 (14%), Positives = 119/390 (30%), Gaps = 49/390 (12%) Query: 8 QGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTS 67 + S+ + PD ++ I ++ S + + +M+ F + +T+ Sbjct: 16 KQSNPYRPD-----SDSDFIRFADITSFIRQRIFLIMSCPFIGLLGAVFYVATTDSIFTA 70 Query: 68 AA-VVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPY 126 ++ P+ + + + S L LD T+ L +K S+ + E L P Sbjct: 71 RTQILIEPKIPELLQKQSSDINLS---LDTSQVETQLAVLRSEKIASMVIDELGLVDDPS 127 Query: 127 VMDQLKEAKIDELDLHR-------AIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAP 179 + L+ A +++ A + + E S T+ L F Sbjct: 128 FKPLHSPSLTVRLERIAGMAVETFAFNEVTQPPTAPPPSTAPDAAETSELTAELLEFQRR 187 Query: 180 T---SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFE------KEKLAQDRIKTK 230 +Q + + + + + ++ +L K +E+L + Sbjct: 188 RRVVETFSQGLGVQRVGV--SYAIDITFNSLDPELAAKVANATAGAFVREQLETRAAAAR 245 Query: 231 NQLDANIQRLNY-------SLDIANAAGIK---KPVYSNGQAVKDDPDFSISLGADGIER 280 ++ +R+ + I K + G + D G Sbjct: 246 EGVEWLEKRIEEVRVQMNLATQITQEFRAKHDYRVGRQPGAPIVDGQVAPSGEGE----- 300 Query: 281 KLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPF-----KYQLSPSLPVKKDG 335 + + EL + + E L N VN PF + + P+ Sbjct: 301 --STTPSGPTLEELEVTAETYRKMYESLLAGFTNSVNQQPFLIADARVITPATRPLAPSY 358 Query: 336 PGKAIIVILSALIGGMVACGGVLLRYAMAS 365 P +++ L L G M G R+ + Sbjct: 359 PRTKLVLALGVLAGLMAGVGLAFARHTLDR 388 >UniRef50_D1BLU6 Lipopolysaccharide biosynthesis protein n=3 Tax=Veillonella RepID=D1BLU6_VEIPT Length = 481 Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 40/272 (14%), Positives = 98/272 (36%), Gaps = 37/272 (13%) Query: 27 IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSF 86 IDL + VL + ++ ++ + A G +F+ P + S +++ + Sbjct: 5 IDLKEVGRVLIKKRRKIINITVACMVLGGAYAFLAPSTYQSTSMLRIKQAQSLSN----- 59 Query: 87 TKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIV 146 + L + + N + +S +++E + I++ + Sbjct: 60 SVLSSANAYSDSMSRQLMNTDAEILKSRNVVEPVI------------TAIEDPEGTGNAP 107 Query: 147 ALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLEN 206 + +K + K+ E +S T + E+AQ + L++ L+ Sbjct: 108 TYEDFVKTRIETKPYKETEL-----LQVSVTGKSPEQAQE--------ANQLLIDTFLKR 154 Query: 207 VRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDD 266 + ++ + +E L + + K++ L + + I VYS +K Sbjct: 155 LAEISHVEQRTTREFLQKRVVTAKSE-------LEQAENKLQQFQIDNKVYSTADQMKGL 207 Query: 267 PDFSISLGADGIERKLEIEKAVTDVAELNGEL 298 D + + + +L++E A + +N +L Sbjct: 208 TDKITLIDREKAQNQLDLETAQAALGSINEQL 239 Score = 44.8 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 42/248 (16%), Positives = 95/248 (38%), Gaps = 16/248 (6%) Query: 124 SPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEE 183 + + +E ++LDL A AL + + +A K + + ++ S + Sbjct: 208 TDKITLIDREKAQNQLDLETAQAALGSINEQL-GSAGKSIADSATVQAYKGQLADLESRK 266 Query: 184 AQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYS 243 A + ++ + + + +E ++ L + + A + L A+ + + Sbjct: 267 ASYIGKYTDEHPAMKEINQQIEEAKSGLNAEINAIASQQAPSSNSAQQGLLADKFKNEAA 326 Query: 244 LDIA--NAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNR 301 L +A + + + +N +A+K P+ I+ K +++ A L+ L Sbjct: 327 LAVAQGKQSTLVELDKANEEAIKGLPEKE----RGYIQAKRDVDVAQDIYQMLSTRLEEA 382 Query: 302 QYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRY 361 + N+V P+LP K P K +I++ SA++G + C L ++ Sbjct: 383 KVA----EVMVPNEVQI-----VDPPTLPEKAIAPRKILIILGSAILGLIFGCLYTLGQF 433 Query: 362 AMASRKQD 369 + Q Sbjct: 434 FGNRKVQS 441 >UniRef50_C9MSS5 Chain length determinant protein n=2 Tax=Prevotella RepID=C9MSS5_9BACT Length = 355 Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 52/365 (14%), Positives = 114/365 (31%), Gaps = 41/365 (11%) Query: 27 IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTP------PEPVQWQ 80 ID + +W+ K + V+ L F LP+ ++S+ + P P Sbjct: 10 IDYTAVFHAIWKKKMVYLTVLSFTILFASLYIFSLPRTYSSSTEIAPEVDSKTPGGGTLG 69 Query: 81 ELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELD 140 L +F + I ++ S + ++ Sbjct: 70 SLASTFGIDMSTLESSDAITPMLYPDLIDD-------NGFI--SMLLPIHVQTGDSTFKG 120 Query: 141 LHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTV--LSGYI-----D 193 + + K+ + A+ + S + T A + L I Sbjct: 121 TYYDYKRTATKVPWWNKLANDLLTKISSKKPEEGKYEVGTPFNAYHLTKLDNSIIESIRK 180 Query: 194 YISTLVVKE-----SLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIAN 248 I+ V K+ ++ L KT + + TK + D + + Y + + Sbjct: 181 QIAIKVDKKTGAITINTEDQDPLIAKTIADSTRELLKDFITKYRTDKARRDVEYYKKLTD 240 Query: 249 AAGIK----KPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYL 304 A + Y D S+ + G + + E++ + ++L G+L Q Sbjct: 241 EAKSSYEHQRLKYGEFSDSNTDVSLP-SVQSKGEDMENEMQLRYNNYSQLKGQL---QLS 296 Query: 305 VEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMA 364 + +L + F ++P+K GP + + ++ + L ++ VL Sbjct: 297 LAKLRE------RTPVFTQIKGAAVPIKPTGPKRMLFLLGTVLFSFILTTIYVLRSITHT 350 Query: 365 SRKQD 369 ++ Sbjct: 351 QNRKQ 355 >UniRef50_C6BLZ1 Putative uncharacterized protein n=2 Tax=Ralstonia pickettii RepID=C6BLZ1_RALP1 Length = 412 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 38/248 (15%), Positives = 96/248 (38%), Gaps = 25/248 (10%) Query: 28 DLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPP-EPVQWQELEKSF 86 DL L+ W ++ V F+ A + F ++++S + P + ++ + +F Sbjct: 18 DLKGLLLRCWELRRKVAVFAVFFSVACFALFFWAGRQYSSEGFMRAPRKFAEYNAQKAAF 77 Query: 87 TKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIV 146 L +D+ + + ++ +L E +++ L + Sbjct: 78 WD--RETLRRYLDQNKKLDDPNGRYLLGALSERFIQKH----------------LQAVLP 119 Query: 147 ALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLEN 206 + ++ + +K E ++++F + ++++AQ + DYI ++ E L + Sbjct: 120 LSKDDLRYI--TDAKGVLESVGILGFSITFKSQSADDAQARVQMMGDYIKDTMLSEDLMD 177 Query: 207 VRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIA----NAAGIKKPVYSNGQA 262 E +T+ +K+++ I+ + L RL + IA A+ ++ + Sbjct: 178 TIYTKESETKAKKQQIDNQIIQKRLALTQAAARLEAARSIAGKYPEASKMEARQLLSTGN 237 Query: 263 VKDDPDFS 270 KD + Sbjct: 238 DKDSSRYL 245 >UniRef50_Q3IV72 Predicted acetyltransferase n=4 Tax=Rhodobacter RepID=Q3IV72_RHOS4 Length = 733 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 34/91 (37%) Query: 18 PLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPV 77 P+A+P +EIDL L+ +W K + + A GL + + ++ E Sbjct: 8 PVAAPEEDEIDLGQLLGQIWHGKLWIGSATLAAGMLGLAWLANTAPTYRADTLLQLEEKA 67 Query: 78 QWQELEKSFTKLRVLDLDIKIDRTEAFNLFI 108 L + ++L + + + + Sbjct: 68 SPLALPTALSELAGGEARSATEVEILRSRLV 98 >UniRef50_C5BJM9 Putative OtnB protein n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BJM9_TERTT Length = 295 Score = 47.5 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 33/253 (13%), Positives = 84/253 (33%), Gaps = 17/253 (6%) Query: 8 QGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTS 67 S+ Y + L+++ LWRAK ++ V+ F A +++ I P K+T+ Sbjct: 2 SNSENPNRYYLELGSVPESLHLVDIGGALWRAKWVLLVVIAVFVGAFAVLAMITPVKYTA 61 Query: 68 AAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYV 127 VV V + V D+ + + EA + S + ++ + + Sbjct: 62 EVVVAEANAVARTDPGSDSA---VPDIGVDLPSNEALAMIT----SRDFINRFIEDNNLL 114 Query: 128 MDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKD--EPSLYTSWTLSFTAPTSEEAQ 185 + + + +A + + D + + +S + E A Sbjct: 115 PVLYRGQWNAQTQNWKLPAEAPTLWQAYKRFSRRVLDVGKDAESGLIRISVSFSQPELAA 174 Query: 186 TVLSGYIDYISTLVVKESLEN-------VRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQ 238 + + ++ ++ ++ + +L+ + + + +K + Sbjct: 175 EWANKIVAEVNEVLRANAIREAEETLAYLNQELQRTASMDLKASLNELVKAQKARVVAAN 234 Query: 239 -RLNYSLDIANAA 250 Y+ I + A Sbjct: 235 VHKQYAFRIVDPA 247 >UniRef50_B7RJK1 Protein-tyrosine kinase, putative n=3 Tax=Rhodobacteraceae RepID=B7RJK1_9RHOB Length = 716 Score = 47.5 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 3/73 (4%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISF- 59 M LN+ S +F P + ++ ID ++ LWR K + V ++ Sbjct: 1 MDKLNMMNQSSQNFA--PTQADDDDSIDFGAMVGTLWRGKWIIALVTAIAVGLAAYYAYK 58 Query: 60 ILPQKWTSAAVVT 72 + + S AVV Sbjct: 59 VAIPLYRSTAVVI 71 >UniRef50_Q0AAI3 Putative uncharacterized protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0AAI3_ALHEH Length = 721 Score = 47.5 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 23/55 (41%) Query: 12 AHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWT 66 + + P +S ++EI++ L+ +L K + + G ++ ++ Sbjct: 2 SQYEHRPTSSDRDDEIEIGRLVEILLNGKWIIAGLSALGLALGGFYAYTSTPVYS 56 >UniRef50_C0VIY7 Protein tyrosine kinase n=4 Tax=Acinetobacter RepID=C0VIY7_9GAMM Length = 740 Score = 47.1 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 40/245 (16%), Positives = 78/245 (31%), Gaps = 23/245 (9%) Query: 131 LKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVL-- 188 L D+ + + + A+ A + S T+ TL F E + L Sbjct: 254 LSYQGEDKQHITKVLNAILSAYSAQNV------ARKSAETAQTLKFLDEQLPELKQQLDK 307 Query: 189 --SGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDI 246 + + + + L E +K+ ++ + + Sbjct: 308 AEREFNKFRQQYNTVDVTKESELYLTQSITLETKKIELEQKQADIAAKYTAEHPAMREIN 367 Query: 247 ANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVE 306 A IKK + +K PD + L++ + V +L L N + Sbjct: 368 AQITAIKKQIADLNSTLKQLPDLQ--------RQYLQLYREVEVNTQLYTALLNSYQQLR 419 Query: 307 QLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASR 366 + +V + PV+ P K I+IL+ +GG + LLR + + Sbjct: 420 IAKAGEIGNVRI-----VDTAVEPVEPIKPKKLQILILAIFLGGFIGTLIALLRNMLRTG 474 Query: 367 KQDAM 371 +D+ Sbjct: 475 IKDSS 479 >UniRef50_Q7NQT3 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NQT3_CHRVO Length = 351 Score = 47.1 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 55/337 (16%), Positives = 103/337 (30%), Gaps = 27/337 (8%) Query: 21 SPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQ 80 + +E++L ++I V + ++AV A IS +P ++T+ A+V P PV Sbjct: 23 QSAPDELNLFDIILVAKEQWRLLLAVPLLLAVLAAGISLAMPDQYTAKALVNIPAPVGAA 82 Query: 81 ELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELD 140 +L+ + + L Y + Sbjct: 83 GGVNIVQSTSLLE---------------QAVEKFQLQRYYAVEDNRSALLALSNVVKTTA 127 Query: 141 LHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVV 200 ++ +S + + A L L + VL +D S V Sbjct: 128 GKDGLLEISATDRNAEQAARLGNYLADLTRQHILDGNLTEQSKRYFVLQKRLDVESEQVS 187 Query: 201 KESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNG 260 + S + + + + E + + Q + AAG V + Sbjct: 188 QLSRKVAQLVPDQEAALGGEGMQLISGFATLEAQLAFQNVQ-------AAGNSGAVSNLQ 240 Query: 261 QAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTP 320 +V + E + D+ Q V DV Sbjct: 241 SSVMQLRASLELANPKVRQMSNEQLAGLRDLYFHRALAAELQRQVSLAKSLADQDVQI-- 298 Query: 321 FKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGV 357 L S P++K GP + +IV+L+ L+G M+A + Sbjct: 299 ---VLKASAPLEKSGPKRTLIVLLAGLVGLMLAIALI 332 >UniRef50_B1XZS2 Lipopolysaccharide biosynthesis protein n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XZS2_LEPCP Length = 398 Score = 47.1 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 49/397 (12%), Positives = 124/397 (31%), Gaps = 41/397 (10%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 MS + + G+D + ++ E+ L++++ +L R K ++ CA L +S++ Sbjct: 1 MSQITQQTGADTKTGNVISDMNASEELSLIDVLLILSRRKLLLVVAPLLVGCAALGMSYL 60 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 + +T++ + PP+ Q L + + + + Sbjct: 61 VRPTYTASVQLLPPQQQQSGALTALLGAAGGM-----ASALGGISGLKNPSDQWIGMLKS 115 Query: 121 LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT 180 ++++ +I E++ EK + + Sbjct: 116 RAIVDAIVNEFSLREIYEVEYQFKARERLEKNSRIVAGKD---------GLIDIEVDDHD 166 Query: 181 SEEAQTVLSGYIDYISTLVV---------------KESLENVRNKLEIKTQFEKEKLAQD 225 E A + + Y+D + L+ K+ + ++ + + + Sbjct: 167 PERAAKIATAYVDELQNLMRTLAVTEAAQRRLFFEKQLSDTKTKLIKAEILLTEGGINTG 226 Query: 226 RIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGA---------- 275 +KT + + + A + S + + + L + Sbjct: 227 VLKTNPEAAVSQLAQAQAAVTAQEVKVSVMRESMTNSNPQLRNAILELASLREQLHRSNR 286 Query: 276 -DGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSL-PVKK 333 + K + VT + Q A ++ + P+ P K Sbjct: 287 DEPERAKGSGAEYVTRFRDFKYYETLFDLFARQYEMARADEARDGSVIQVIDPAQVPEYK 346 Query: 334 DGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDA 370 GP + +I +L+ ++ +++ VL +A+ A Sbjct: 347 SGPKRGMIAVLATILTFILSVLYVLASHALRGYTTRA 383 >UniRef50_B3EME9 Capsular exopolysaccharide family n=3 Tax=Chlorobiaceae RepID=B3EME9_CHLPB Length = 803 Score = 47.1 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 48/381 (12%), Positives = 121/381 (31%), Gaps = 77/381 (20%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVV-TPPEPVQ 78 + EI++ L+ VLW+ + + AV +L F ++ S +VV + Sbjct: 6 PNQFEQEINIQELLQVLWQNRLIIGAVTGVVLVLVMLYHFSATPEYRSTSVVLIKSDKGG 65 Query: 79 WQELEKSFTKLRVLDLDIKIDRTEAF---NLFIKKFQSVSLL--------EEYLRSSPYV 127 E+ F + +L I+ ++F +++ + Y+ ++ Sbjct: 66 MSEMINPFESMTGFELQNDIELVKSFPLAEEVVRELYARKDRDSLQLFGERRYISPIGHL 125 Query: 128 MDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTV 187 ++ ++ + I + + + +S ++P +EA + Sbjct: 126 FSWMRFGTREKEEKEYDIRMREYATALQKRISVSNSRDTDI---LQVSVSSPFPDEAALL 182 Query: 188 LS----GYID---------------YISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIK 228 + Y+ ++S + + E + ++ + +K+ + + Sbjct: 183 TNAICRSYMRKDIEWNADQAMSVKEFVSDQLASQQKEIGEVENQLSSYMKKQNIYELTGN 242 Query: 229 T------------------------KNQLDANIQRL---NYSLDIANAAGIKKPVYSNGQ 261 KN+ D I +L +L A + + + Sbjct: 243 AEKLLEKLVEAESRYNDAQAECNILKNRQDYLINKLSAEEKALSAKIAKNVDQQSRELKE 302 Query: 262 AVKDDPDFSISLGADG----------------IERKLEIEKAVTDVAELNGELRNRQYLV 305 +K + I++ + +++L+ + T EL + RQY Sbjct: 303 RIKQEEKQLIAMAGEAGTQDAGYLAKKQQLDMFKQRLQELTSNTIAGELAFASKARQYQF 362 Query: 306 EQLTKAHVNDVNFTPFKYQLS 326 + +++ DV KY Sbjct: 363 DLISEQLQTDVRLAELKYIAQ 383 >UniRef50_Q1J1I9 Protein-tyrosine kinase n=3 Tax=Deinococcus RepID=Q1J1I9_DEIGD Length = 554 Score = 47.1 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 34/246 (13%), Positives = 80/246 (32%), Gaps = 20/246 (8%) Query: 9 GSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSA 68 SD P+ P + NEIDL+ L + R ++ V A L S + P + ++ Sbjct: 6 QSDQFPPERP-GQGTENEIDLVTLWQGVRRRLPWIVLVAALLAGVVYLWSRVQPNVYEAS 64 Query: 69 AVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVM 128 + + L + + L + + + +R + Sbjct: 65 SSLITTGNGNVGSLRDAL--VTAPPLPEGALQEALQGPIVLG---EVIRR--VRQDDRLA 117 Query: 129 DQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVL 188 +++ ++L + + V + + +P +T++ PT + A +L Sbjct: 118 PEMRAELANKLQQE-------LQTRRVKTLDLQARLDPGGNGIYTVTAQGPTPQ-AAALL 169 Query: 189 SGYIDYISTLVVK----ESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSL 244 + + + ++ N L + +L D + + R Sbjct: 170 ADITAQALLNWDRGRALQGVQRAENSLRAQLAEIDRQLQSDTLNALERQTLVAARATAQR 229 Query: 245 DIANAA 250 ++A A+ Sbjct: 230 NLAQAS 235 >UniRef50_P58593 Putative tyrosine-protein kinase epsB n=7 Tax=Burkholderiaceae RepID=EPSB1_RALSO Length = 751 Score = 47.1 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 42/116 (36%), Gaps = 2/116 (1%) Query: 18 PLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVV-TPPEP 76 P + +E+DL+ + VL + + + G +F+ + + +V P Sbjct: 9 PAVNAPESELDLVRYLDVLVANRWLIAGIAAVVMLLGATYAFLARPVYEADVLVQVEDNP 68 Query: 77 VQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLK 132 + L + L + D + + + ++V L Y+ + P+ + Sbjct: 69 NSAKSLLGDVSSLFDVKTDANAEIEILRSRMVVG-KAVDNLHLYITAKPHYFPLIG 123 >UniRef50_A9EXV4 Protein tyrosine kinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EXV4_SORC5 Length = 770 Score = 47.1 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 102/313 (32%), Gaps = 24/313 (7%) Query: 67 SAAVVTPPEPVQWQELEKSFTKLRVLDLDIKID-RTEAFNLFIKKFQSVSLLEEYLRSSP 125 S V + ++ T L + ++ +D + N + ++ +Y + Sbjct: 164 SRLAVIRYNDADRERAQRILTTLMDIYIEQNLDDALASTNSAVDWLRAQLDKLKYDLETS 223 Query: 126 Y--VMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEE 183 + + I ++D L E+MK ++D + + + + + + + Sbjct: 224 ETSLHEYKLSKNILDVDFEDKTNLLREEMKQINDALTSVRTKREEFAARSHELSKLDPNN 283 Query: 184 AQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL--N 241 + S L+ L+ +R + E + + + + + A +R+ N Sbjct: 284 PLDL------PASELIQSPVLQMLRARQEECVRERDALIGSGKGENHPDVRAATERVAAN 337 Query: 242 YSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADG---------IERKLEIEKAVTDVA 292 S IA ++ V + VK + L D ++ + + + D Sbjct: 338 RSALIAEIKNVQGAVNRDLAIVKRQEGGLVGLLEDAKKQAFELNSLKIEYDRLRRTKDNT 397 Query: 293 ELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMV 352 E +L + L + + P+ P+ P + + + L G ++ Sbjct: 398 EKLYQLVLERTKESDLQRM----LRVNNIHVLDRPNFPLTALRPRVGVNIGIGILAGLLL 453 Query: 353 ACGGVLLRYAMAS 365 G L R + Sbjct: 454 GIGAALARAMLDR 466 >UniRef50_B6QYR5 Succinoglycan biosynthesis transport protein ExoP n=1 Tax=Pseudovibrio sp. JE062 RepID=B6QYR5_9RHOB Length = 737 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 70/233 (30%), Gaps = 15/233 (6%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ 78 +P+ + I+L + + ++ V GL +F+ K+T+ V Sbjct: 7 SNAPTEDIINLRLAFQYVRKYWSLILGVTGFVTVLGLTFAFLAAPKYTAVTSVYIETRAS 66 Query: 79 WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVM---DQLKEAK 135 + L D K+ +++ + + E L +SP L E Sbjct: 67 --NVVDVKAVLSGFGSDNKLLQSQIEIIGSNAVAKRVIAENDLENSPAFQSKPSLLSEVF 124 Query: 136 IDELDLHRAIVALSEK-MKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDY 194 A V+L ++ + + ++ T LS+ A + E A + + + Sbjct: 125 TKVTGEPPATVSLEQRVLDGLHVTLNRNT------TVVDLSYRAHSPEMAAQLAN---AF 175 Query: 195 ISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIA 247 + + ++ R ++L +A Sbjct: 176 AEAYLADRLATKYDAIRQASEWLSIRLSELGVKVRSSEQAVEQFRNEFNLQVA 228 >UniRef50_B7J3H5 Chain length determinant family protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B7J3H5_ACIF2 Length = 336 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 19/49 (38%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVV 71 S +EI L +L ++ + K V + P + S AVV Sbjct: 84 SEDEISLRDLWEIIAKRKWLVFLSTVVCLGLAAAYVSLAPTIYESTAVV 132 >UniRef50_A9WAT9 Lipopolysaccharide biosynthesis protein n=2 Tax=Chloroflexus RepID=A9WAT9_CHLAA Length = 443 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 43/325 (13%), Positives = 104/325 (32%), Gaps = 32/325 (9%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI-LPQKWTSAAVVTPPEPVQWQEL 82 N+EIDL +S L R ++ A ++++I P S +++ P Q L Sbjct: 2 NDEIDLRPYLSALLRRWWIILGTALGVALLVGVLAWIRTPPHTASTSLLIVPASAQV-TL 60 Query: 83 EKSFTKLRVLDLDIKIDRTEAF--------------------NLFIKKFQSVSLLEEYLR 122 + FT L +++ EA +Q +L + Sbjct: 61 DNRFTSRDSLLFTTTVNQREALLGLARDATLEERVAAILESEGRLPDGYQLGNLSQRITI 120 Query: 123 SSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSE 182 + + ++ D R + ++ + + + L+ + Sbjct: 121 ETDGDLVRITARADTADDARRLAILWGQEYTRLVNETYTRDTSSLELVEQQLTEARERYQ 180 Query: 183 EAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKT----KNQLDANIQ 238 AQ L +I ++ + + + + ++ A + + DA + Sbjct: 181 MAQAELEAFIAQGELAAAEQEVRRLSDLVNSARAAGTDRFADYLRRANDIEQILRDAQLL 240 Query: 239 RLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTD------VA 292 R A+ + + + +++ D ++ L VT + Sbjct: 241 RQRLGDQSADEVNVADALAALLLRIRNLSDQGSDRPILQLDSSLTDNAVVTVADLDRLIT 300 Query: 293 ELNGELRNRQYLVEQLTKAHVNDVN 317 L E ++ + E+L++ N+++ Sbjct: 301 ALRAEYQDVRSEAERLSELPPNELS 325 >UniRef50_A4SDR9 Lipopolysaccharide biosynthesis protein n=2 Tax=Chlorobium/Pelodictyon group RepID=A4SDR9_PROVI Length = 370 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 48/365 (13%), Positives = 109/365 (29%), Gaps = 30/365 (8%) Query: 15 PDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPP 74 P + P ++EI LL+L L + KK ++ + A A +++ +P Sbjct: 11 PQFQRPDPYDDEISLLDLAITLAKHKKLIIGLPLAVAIVTAVVTMFMP---------ATY 61 Query: 75 EPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEA 134 + V ++ + F +L + Y ++ + Sbjct: 62 TATTTLLPRGVDKNILVSLVESQPMGDSLVARF-------ALQKAYGVATSRDARGVLAE 114 Query: 135 KIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDY 194 + L + + A+ P + F T + +L Sbjct: 115 AASVKAEKDGTITLDVDDSSPERAAAIANAYPDVLRQLMGKF-IVTPASERRMLFEKQLP 173 Query: 195 ISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKK 254 + +++E+ ++ + + +K ++L A I L + I Sbjct: 174 DAETMLEEARSAMQELQAGSKSVAMDGKVESLVKAASELKARIAMKEVELVV--IGNIDS 231 Query: 255 PVYSNGQAVKDDPDFSISLG---------ADGIERKLEIEKAVTDVAELNGELRNRQYLV 305 + +G + L + R+ +AV + L + + Sbjct: 232 GTFQDGLPRQQLNALWEELASVENNPTFISKVSGREQAYIRAVGGLTYAETRLDALRRQI 291 Query: 306 EQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 + +P P +A IV+++AL G +A + A+ S Sbjct: 292 GLAKV--AEQREAPMIQVLNRADVPSGASKPQRAKIVLIAALAAGFLAVLWAFVVEALRS 349 Query: 366 RKQDA 370 +D+ Sbjct: 350 AAEDS 354 >UniRef50_A5FN30 Lipopolysaccharide biosynthesis protein n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FN30_FLAJ1 Length = 357 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 59/358 (16%), Positives = 124/358 (34%), Gaps = 28/358 (7%) Query: 24 NNEIDLLNLISV-------LWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEP 76 N+EI L L+ L K ++ A AGL SF+ +T+ + Sbjct: 8 NDEISLKELLLKISDWYNYLLSQWKIIVLAGIFGALAGLTYSFLKKPIYTATLSFVVEDE 67 Query: 77 VQWQELEKSFTKLRVLDLDIKIDRTEAF--NLFIKKFQSVSLLEEYLRSSPYVMDQLKEA 134 L + L LDI + + F + + F+S S++E+ L + + +++ Sbjct: 68 KSTGGLGGALGLAGSLGLDIGGNGSSIFSGSNLTELFKSRSMVEKTLLTPVHYNNKVISL 127 Query: 135 KIDELDLHRAIVALSE--KMKAVDDNASKKKD-----EPSLYTSWTLSFTAPTSEEAQTV 187 + +H+ ++ K K + + +D S+ + + + AQ Sbjct: 128 AEMYIQIHKWRDKWNDQPKFKNIKFLPNLNRDYFTRENDSILGVIYRNLSQNSLSVAQKD 187 Query: 188 LSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIA 247 I I E + + Q K + K + +D +++ Sbjct: 188 KKNAIISIDVSSTNELFS-LYFCEALAKQVGKFYVETKSKKARMNMDILEHQVDSVRSEL 246 Query: 248 NAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQ 307 N A I +N +P ++ A R+++++ + EL + Sbjct: 247 NGA-ITSVAVANDNTFNLNPALNVRR-APSSRRQVDVQANTAILTEL--------VKQSE 296 Query: 308 LTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 L K + + P LP+ K+ GKA I+ +++ + +++R Sbjct: 297 LAKVTLRK-ETPLIQVIDRPILPLSKEYFGKAKGFIIGSILASFIIMIILIVRRLFKQ 353 >UniRef50_A3WGE3 WcbD n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WGE3_9SPHN Length = 387 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 61/366 (16%), Positives = 116/366 (31%), Gaps = 44/366 (12%) Query: 31 NLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLR 90 L++ L R + VVF A L I + S + P + Q + L Sbjct: 19 QLVATLKRWRWFAAFVVFPSLVATLYYGVIAANIYVSESRFVIKAPERSQSSGSALGNL- 77 Query: 91 VLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSE 150 + +A + I +S L + L V + D L I Sbjct: 78 LQSTGFGTGAEQA-SEIIGYLRSRDALSD-LSERVDVRAAFGSDEADFLSRFPLIYQSDS 135 Query: 151 KMKAVDDNASKKKDEPSLYTSWT-LSFTAPTSEEAQ-------TVLSGYIDYISTLVVKE 202 + S + +P T T LS +A T EEAQ + ++ ++ V + Sbjct: 136 FEDLYEYYGSMVEAQPDTDTGLTVLSVSAYTPEEAQALNAGLLELGEELVNRLNERVNTQ 195 Query: 203 SLENVR---NKLEIKTQFEKEKLAQDRIKTK----NQLDANIQRLNYSLDIANAAGIKKP 255 +++ + ++ + + + + KL R + Q + ++ +L IA A ++ Sbjct: 196 AIDEAQLVVDEAQQRVRDARIKLGAYRNSAELLDPAQQGIGVLEVSNAL-IAQEAALRAQ 254 Query: 256 VYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVND 315 + + + P + E+ V NG L + + Sbjct: 255 LAEIRRNAPNHPAIPALRDRIAGLSQQVAEQTGRAVGTPNGIAAKITEYENLLVEQEFAE 314 Query: 316 VNFTPF---------------KYQLSPSLPVKKDG---PG--KAIIVILSA-----LIGG 350 T Y P K D P ++I+ ++ A L+G Sbjct: 315 QTLTAANAALEQARIEAKQQQYYLERVVEPNKPDDAIMPARIRSILAVIFATLCLYLVGW 374 Query: 351 MVACGG 356 M++ G Sbjct: 375 MLSVGV 380 >UniRef50_A3VCH3 Putative uncharacterized protein n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VCH3_9RHOB Length = 714 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISF-ILPQKWTSAA-VVTPPEPVQWQ 80 +E+DL+ L+ ++WR + ++A V +L I K+ S A +V E Sbjct: 12 QEDELDLMRLLGLVWRGRWIILACVAVAIVLSMLYVRNIAVPKYASTARLVIEAEDRNVV 71 Query: 81 ELEKSFTKLRVLDLDIKIDRTEAFNL 106 ++E + + D I + + + Sbjct: 72 DIEAVVSGISTSDTSINTELSIITSR 97 >UniRef50_C8SQQ9 Lipopolysaccharide biosynthesis protein n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SQQ9_9RHIZ Length = 858 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 47/350 (13%), Positives = 116/350 (33%), Gaps = 43/350 (12%) Query: 7 KQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWT 66 + +DA F D ID + ++ + R+K ++ A G+ I+ P+K+ Sbjct: 130 RGEADASFGDRGDDQQWKPLIDPMQVVRGVARSKLLIITTTLIGAGLGIAIALSTPKKYE 189 Query: 67 SAAVVTPPEPVQWQELEKSFTK-LRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSP 125 + A + +P + ++ T+ + D + I + ++ S ++L + + Sbjct: 190 ATAELIV-DPRDLKLTDRDLTQNVVASDATLAIVENQ-----VRVLTSGTVLNKVVDKLN 243 Query: 126 YVMD-QLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYT------------SW 172 V D + L + + ++ + ++ ++ ++ Sbjct: 244 LVNDPEFNGEGSGGLGIRSLVHSILSREDGPGSVDEVRRRALAVGNLAESLSVERGGKTF 303 Query: 173 TLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEI-KTQFEKEKLAQDRI-KTK 230 ++ +A T ++ L I T V ++ +++ T +L + R Sbjct: 304 VITVSATTQNGEKSAL---IANTMTDVFLQTFGQIQSDTAGRATDELTARLDELRKGVEA 360 Query: 231 NQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTD 290 + R ++ L V + G + DD + +L + +A T Sbjct: 361 AERKVEDFRASHDL-----------VDAQGHLISDDEMLK-------LNEQLSVARARTL 402 Query: 291 VAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAI 340 + L+ ++N S +K++ AI Sbjct: 403 ELNARAASARSVDVNSVLSGTLPEEINSNTMSDLRSQYATLKQEADRAAI 452 >UniRef50_B8KAQ4 Chain length regulator (Capsular polysaccharide biosynthesis) n=1 Tax=Vibrio parahaemolyticus 16 RepID=B8KAQ4_VIBPA Length = 474 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 86/255 (33%), Gaps = 42/255 (16%) Query: 29 LLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTK 88 L+ L++ WR + ++ + F AG I + P + S + E + + Sbjct: 8 LIVLLNAAWRQRYIIVLPILIFPFAGYFIGKMAPANYVSHTSMLIQETAKMNPFLEDIAV 67 Query: 89 LRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVAL 148 +L + S L ++ ++ + QL + L+ R I L Sbjct: 68 STMLKERLNAL-------------STLLKSRHVLTAVAIEHQLINDGMSPLEKDRVINRL 114 Query: 149 SEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVR 208 +E + ++ TAP + + +L D+ ++ +++ Sbjct: 115 AESLNVTQPGKD----------FLKITLTAPRPDGMKGLLESISDHFIEQLLAPERSSIK 164 Query: 209 N-----------------KLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSL--DIANA 249 + E+K K + + + ++Q + + L SL A Sbjct: 165 DSAEFLAIHIEERKTALENAEVKLANFKNEFSSVTPEMQSQSLSRLASLKQSLAEKEAEL 224 Query: 250 AGIKKPVYSNGQAVK 264 AG+K+ + S Q + Sbjct: 225 AGVKRSLGSLDQQLS 239 >UniRef50_Q2BP10 Chain length regulator (Capsular polysaccharide biosynthesis) n=1 Tax=Neptuniibacter caesariensis RepID=Q2BP10_9GAMM Length = 491 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 40/288 (13%), Positives = 105/288 (36%), Gaps = 43/288 (14%) Query: 37 WRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDI 96 WR + + + GL + + P+K+ ++ + E + + + L Sbjct: 18 WRRRYLIAVPIILMPFVGLAVGILSPKKYETSTTILFQEAAEHNPFLEDLSIATNL---- 73 Query: 97 KIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVD 156 ++ ++ L S + + E +DE + I LS+ +KA Sbjct: 74 --------RDRMEALNALLHSRHILASVAWQRKLIHEE-MDEESKAQVIADLSKALKATL 124 Query: 157 DNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSG-YIDYISTLVVKESLENVRNKLEIKT 215 + +S+ AP E + L + ++ ++ + ++++ + Sbjct: 125 VGDNL----------IKISYKAPDKSEMKETLRMVSMRFVERVLAPQRSSIIQSESFLSK 174 Query: 216 QFEKEKL-----AQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFS 270 + E+ ++ Q + KN+ + + RL+ + ++A + ++ + Sbjct: 175 ELEERRVDLQSAEQALAEYKNKYASELPRLHSA-NVARLSELQAYLAER----------R 223 Query: 271 ISL-GADGIERKLEIEKAVTD--VAELNGELRNRQYLVEQLTKAHVND 315 I L GA + L + + T+ V ++ + N + QL + ++ Sbjct: 224 IELDGARAAQASLAMRLSQTNPVVGKIEEAIINVMAELTQLRARYTDE 271 >UniRef50_B2JKP4 Exopolysaccharide transport protein family n=1 Tax=Burkholderia phymatum STM815 RepID=B2JKP4_BURP8 Length = 744 Score = 45.9 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 37/207 (17%), Positives = 69/207 (33%), Gaps = 36/207 (17%) Query: 189 SGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDI-A 247 + Y+ +E+ +++ L + K KL Q + + ++D+ A Sbjct: 270 NEYMRQKVQRTQEEAEKSIAF-LNQQLPELKAKLEQAEEEYNQFRSEH-----GAVDLGA 323 Query: 248 NAAGIKKPVYSNGQAVKDDPDFSISLGAD---------GIERKLE-IEKAVTDVAELNGE 297 AA + + + + L A +LE EKA++++A Sbjct: 324 EAAALLQSTAQAQNRIAELRQQRAQLDARYMPDNPALIATNGQLEEAEKALSELAVQTRR 383 Query: 298 LRNRQYLVEQLTKAHVNDVNFTP-------------------FKYQLSPSLPVKKDGPGK 338 L + V +L + D N + S ++P P + Sbjct: 384 LPPLEQSVLRLQREVQVDTNIYTNLLNTKEQMRLAKAGKVSNARLIDSAAVPEGPIRPKR 443 Query: 339 AIIVILSALIGGMVACGGVLLRYAMAS 365 +IV+ +L G V VL R M S Sbjct: 444 TLIVVAGSLTGIFVGSAYVLFRRRMNS 470 >UniRef50_Q97SJ6 Capsular polysaccharide biosynthesis protein cpsC n=114 Tax=Streptococcus RepID=CPSC1_STRPN Length = 230 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Query: 26 EIDLLNLISVLWRAKKTVMAVVFAFACAGLLIS-FILPQKWTSAAVV 71 EID+ L+ LW+ K ++ V S FI+ ++TS + Sbjct: 8 EIDVFQLVKSLWKRKLMILIVALVTGAGAFAYSTFIVKPEYTSTTRI 54 >UniRef50_B9X9K9 Polysaccharide export protein n=1 Tax=bacterium Ellin514 RepID=B9X9K9_9BACT Length = 1054 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 43/275 (15%), Positives = 91/275 (33%), Gaps = 25/275 (9%) Query: 100 RTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNA 159 NL+ + +L + + V + +E + I L ++++ A Sbjct: 181 AVNLANLYASNAERFTLELQRREAGAAVENYFREQL---TFMESNISNLEDQVRRTVPGA 237 Query: 160 SK--KKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQF 217 K + L+ A A + LS + K+ L+ + L Sbjct: 238 GVLVNKLNQMQGSVSNLNHQAQLPMTASSSLSMSRSFAKLQQAKDELDKLLVTLTPA--- 294 Query: 218 EKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADG 277 R++ +L N +Y+L N+A + P + G Sbjct: 295 ------NPRVQAAQEL-VNAYEKDYALAATNSA-------TGSAGSSLLPAIAAGTGGPL 340 Query: 278 IERKLEI-EKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGP 336 + + +I + + + +L +R+ E K +V F + + P K+ Sbjct: 341 VNPEYDIILRKLQAIDASRQQLEDRKREAEAFQKNPPGNVKHYSFATLKNIT-PDKR-WL 398 Query: 337 GKAIIVILSALIGGMVACGGVLLRYAMASRKQDAM 371 ++ + ++G +VA GVL+ R + A Sbjct: 399 KVSLATVFGGILGLIVAIAGVLIVEVADDRLKTAA 433 >UniRef50_UPI00016A48EE exopolysaccharide transport protein family n=1 Tax=Burkholderia ubonensis Bu RepID=UPI00016A48EE Length = 744 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 45/305 (14%), Positives = 99/305 (32%), Gaps = 34/305 (11%) Query: 68 AAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYV 127 A P + L + D+ I+ + ++E + S + Sbjct: 196 TAETFPASAGPIKLLVRGINGTAGAGFDLVRGSR---MDTIEDLRKQLRIQELGKQSGVI 252 Query: 128 MDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTA-------PT 180 L+ D + L + + ++ + + + E S L F A Sbjct: 253 SATLR--SDDPVQLSAILNEIGDQYVRQNVDRKAAQAENS------LQFLASQEPKMKRD 304 Query: 181 SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 E+A+ L+ Y +T V + E ++ L E++ + + +L + Sbjct: 305 LEQAENRLNDY---RNTHKVLDLTEEGKSILAQSLDAEQQHFT--LTQKRQELLTRFGPM 359 Query: 241 NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN 300 + + I + + + + D + + + + DV Sbjct: 360 HPGV-----VAIDEQIAGTLGYIGELTDQIKRMPT----AQRDAIRLQRDVQVNTDLYLA 410 Query: 301 RQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR 360 + +EQL V + + SLP + P K I+V+++ L+G V G +R Sbjct: 411 LRNNIEQLRLLKAGKVG--SVRLVDAASLPERAVFPKKTIVVVVATLLGLFVGAGAAFVR 468 Query: 361 YAMAS 365 + + Sbjct: 469 DQLFT 473 >UniRef50_O52788 Tyrosine-protein kinase ptk n=4 Tax=Acinetobacter RepID=PTK_ACIJO Length = 733 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 74/233 (31%), Gaps = 19/233 (8%) Query: 152 MKAVDDNASKKKDEPSLYTSWTLSFTAP-----TSEEAQTV--LSGYIDYISTL--VVKE 202 + ++ + K + + +S++ ++E AQT+ L + + V + Sbjct: 242 ILGLNYQGTDKTHITQVLNAILVSYSQQNIERRSAETAQTLKFLDEQLPELKQQLDVAER 301 Query: 203 SLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANA-AGIKKPVYSNGQ 261 R + ++ +L + T A +++ +A A A Q Sbjct: 302 EFNKFRQQYNTVDVTKESELFLTQSVTLETQKAQLEQ-----QVAEAGAKYTSEHPVMKQ 356 Query: 262 AVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDV----N 317 + +G K + + +Q L + Sbjct: 357 MNAQLGAINKKIGELNATLKELPDLQRRYLQLYREVEVKQQLYTALLNSYQQLRIAKAGE 416 Query: 318 FTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDA 370 + + P++ P K I+ILS +GG + LLR M S +D+ Sbjct: 417 IGNVRIVDTAVEPIEPIAPKKLQILILSIFLGGFLGTLLALLRNMMRSGIKDS 469 >UniRef50_C8S386 Capsular exopolysaccharide family n=1 Tax=Rhodobacter sp. SW2 RepID=C8S386_9RHOB Length = 730 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 36/241 (14%), Positives = 80/241 (33%), Gaps = 39/241 (16%) Query: 25 NEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEK 84 +EIDL I++L R ++ + V A L K+ + ++ Sbjct: 4 DEIDLRENIAILRRQRRLIGITVLVVVLATLAYLLTATPKYQATVLIQIDTGNSNLLDTS 63 Query: 85 SFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY-----LRSSPYVMDQLKEAKIDEL 139 + ++ ++ K+D ++ S + L S P QL + L Sbjct: 64 NSDGMQSAAINTKVDSE------VEILNSSATALAVIERVGLVSDPEFGPQLGLREKIGL 117 Query: 140 DLHRAIVALSEKMKAVDDNASKKKDEP------------------SLYTSWTLSFTAPTS 181 L + + + +++ + E +L +S T+ Sbjct: 118 ALGLDLSSARLRQIVGLAPSTQDEGEALASATLRAFQTALDARRRALTNLVAVSVTSEDP 177 Query: 182 EEAQTVLSGYID-YISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 + A ++ + YI V + +V ++ L++ + +L A+ +RL Sbjct: 178 KRAASLANATAQVYIQRQVAAKINSSVA---------ARDVLSRQLATAQTELAASEERL 228 Query: 241 N 241 N Sbjct: 229 N 229 >UniRef50_C4LLU0 Putative uncharacterized protein n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LLU0_CORK4 Length = 628 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 5/96 (5%) Query: 275 ADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTP-----FKYQLSPSL 329 D + + AV ++ +L R + N SP Sbjct: 148 TDAAQAQRIASDAVKVLSNQAEQLEARTDNNDNGNSRSRTSSNQQSTTTPRISLINSPEK 207 Query: 330 PVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 + P A+ +IL ++G +VAC V LR+ + Sbjct: 208 ATQPSSPKMAMNLILGGVLGFLVACILVALRFFLDR 243 >UniRef50_C7PAG1 Lipopolysaccharide biosynthesis protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PAG1_CHIPD Length = 729 Score = 45.5 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 33/244 (13%), Positives = 74/244 (30%), Gaps = 38/244 (15%) Query: 28 DLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPP-EPVQWQELEKSF 86 D++ + L + K ++ A + + P+ + S + +L Sbjct: 2 DIIYFVKALLKKKWWIIVSTIIAIVAAFVFTLGKPRMYASVTQIATGFTVNDQVKLRDEN 61 Query: 87 TKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE----LDLH 142 + D+ + + S +LL L ++ + E +D Sbjct: 62 VNIFEADVKFDNAIETINSPVVIGMLSYNLLLHDLTTTKPYVQLEANDLKSEAYRKVDKQ 121 Query: 143 RAIVALSEKMKAVDDNASKKKDEPSLYTSWTL-------------------------SFT 177 A+ L K+ ++ +S E + L +T Sbjct: 122 AAVTILRNKLDSLQVLSSYNPVERDILGYLKLYGYDYEAIRKHLNAGRVQRTDYLEIVYT 181 Query: 178 APTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANI 237 A E+A ++ V +E + R+ ++ E Q ++ K +LD + Sbjct: 182 AENPEQAAYTVN--------TVYREFIRYYRSMRSERSVESVESFDQLAVQKKAELDKKV 233 Query: 238 QRLN 241 + L Sbjct: 234 EALR 237 >UniRef50_B2J3C6 Lipopolysaccharide biosynthesis protein n=5 Tax=Nostocaceae RepID=B2J3C6_NOSP7 Length = 738 Score = 45.2 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 36/317 (11%), Positives = 98/317 (30%), Gaps = 22/317 (6%) Query: 22 PSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPE-PVQWQ 80 + +D+ L ++L R + ++ V + L++ + + S+ + Q Sbjct: 16 SAQGAVDIRQLSTILLRRRFLILGVSCVVMSSASLLAVLAKPTYQSSMQILVNSNLSQGT 75 Query: 81 ELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY-LRSSPYVMDQLKEAKIDEL 139 + + + ++ S L + L S Y L + Sbjct: 76 QSNNIPVEADTQVTNSNYQVVDSTTQMKLMLSSKLLQKAVDLVHSDYPDITLADINGQTK 135 Query: 140 DLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSG----YIDYI 195 +A + ++ + + N + +SF +AQ +L Y +Y Sbjct: 136 QNKKAPLEVTPEEGGIGANKV-------FSQVFKVSFNDEDPVKAQKLLQALQKVYQNYN 188 Query: 196 STLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDI--ANAAGIK 253 + + + +KE D+ + + + I + A I+ Sbjct: 189 KEQQKERLNHGLAFVNARLPEIKKEVSKADKNLEQFRKKHKLLNPEVQSKILLESLADIQ 248 Query: 254 KPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHV 313 + + ++D D +E+++ T++ ++ L L++ Sbjct: 249 NQLQTTRANLQDANAR-----YDNLEQQIASSSQQTEL--ISSRLNQSSRYQTLLSEIQN 301 Query: 314 NDVNFTPFKYQLSPSLP 330 ++ + + + P Sbjct: 302 TELALAKERLRYTDDYP 318 >UniRef50_A9EY54 Succinoglycan biosynthesis transport protein exoP n=3 Tax=Rhodobacteraceae RepID=A9EY54_9RHOB Length = 697 Score = 45.2 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 102/278 (36%), Gaps = 31/278 (11%) Query: 11 DAHFPDYPLASPSNNEI-DLLNLISVLWRAKKTVMAVVFAFACAGLLISFI-LPQKWTSA 68 + P A+ E+ DL + +++WR + + A V G+ ++I + + Sbjct: 5 NVSTPKTSFAADDGQEVLDLGAIFAIIWRGRWVIAACVLIGLIVGIWRAYIVATPLYGAE 64 Query: 69 A-VVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYV 127 +V P + ++E + L D ++ RTE L ++ + L S P Sbjct: 65 VQLVLDPRDEKVVDIESVVSSLSATD---EVIRTEVHILGGRELAGQVVDRLNLISDPEF 121 Query: 128 MDQLKEAKIDELDLHRAIVA------------------LSEKMKAVDDNASKKKDEPSLY 169 L++ + + + + ++ + EK+ ++ + P Y Sbjct: 122 NMMLRDPGFNPVQVLKDMIKGILGMQVYDTSLTPDPAFVREKVIQTLLANTRVVNIPDTY 181 Query: 170 TSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIK- 228 +++ + +A + + + T V + + N E T + E++ + R + Sbjct: 182 I-FSIWVLSENPFKAADIAN---AFADTYVENQVAVKL-NVTEQATGWLAERVTELRSQL 236 Query: 229 -TKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKD 265 + A+I+ A G++ + S A+ + Sbjct: 237 EVNERRVADIRAQADVTSPAQLIGLENRLISLRSALAE 274 Score = 45.2 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 68/204 (33%), Gaps = 21/204 (10%) Query: 171 SWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTK 230 + +S + +E A V ++ L +++ E + + +T Sbjct: 263 NRLISLRSALAERAAEV-------AEQQALQTELTSLQTVEEQRVAARRNGYGAILARTD 315 Query: 231 NQLD---ANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKA 287 N D + + +L L A A K+ A D + +I+ +D + ++ E+ Sbjct: 316 NPQDGWRSVLAQLARDLREAEA---KEQAIRRSMA---DLEITIATQSDALTEVVQAERD 369 Query: 288 VTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSAL 347 L +NR D + P + P K I+ILS Sbjct: 370 AEASRLLFENFQNRLRETSMQIGLQRADSRVISRAF-----PPDRPALPNKGQILILSVF 424 Query: 348 IGGMVACGGVLLRYAMASRKQDAM 371 +GG + V++ +R A Sbjct: 425 LGGFLGTVLVVVLQLSRARLHSAA 448 >UniRef50_Q390Y9 Exopolysaccharide transport protein n=30 Tax=Burkholderia RepID=Q390Y9_BURS3 Length = 764 Score = 45.2 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 37/99 (37%), Gaps = 2/99 (2%) Query: 26 EIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKS 85 E+DL ++ VL + + A AG L +F+ P ++ + ++ + + Sbjct: 16 ELDLAGVVDVLAAQRWLIALTTAACVGAGTLYAFLAPPQYQADILLQVEDSGDTSAAKSM 75 Query: 86 FTKLRVL-DLDIKIDRT-EAFNLFIKKFQSVSLLEEYLR 122 + L D+ + + ++V L Y+ Sbjct: 76 LGDVSSLFDIKSSAAAEAQILASRLVVTRAVDELRSYIV 114 >UniRef50_B3QD29 Capsular exopolysaccharide family n=3 Tax=Rhodopseudomonas palustris RepID=B3QD29_RHOPT Length = 782 Score = 45.2 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 47/349 (13%), Positives = 110/349 (31%), Gaps = 36/349 (10%) Query: 60 ILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEE 119 + P + + A+ + ++ L +S+ + + N F + + + Sbjct: 146 LTPSELEARALSRVKDNLKVMRLGRSYIEQISFTSLVPEKAAVIANAFADAYIEDQIQAK 205 Query: 120 Y---LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 176 + R+S ++ ++ E + D +RA+ + K + L +S Sbjct: 206 FEATRRASEWLQQRIGELRQQASDAYRAVQDFKSSNSIIVSGDGKLASDLEL-DQLGISL 264 Query: 177 TAPTSEEAQTVLS-GYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDA 235 +E +Q I + L ++ + + + + + + R + LD Sbjct: 265 AKARAETSQARAKLERITRVLELRQEKGSNEIPDPV-VTDALSNPVITRLRQQY---LDN 320 Query: 236 NIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTD----- 290 + +S + + S V+ +S A+ +++I K D Sbjct: 321 QSKEAEWSSRYGAEHQAARNLRSEMANVRQAIWDEVSRIAESYRSEVQIAKTQEDSIDKR 380 Query: 291 ---VAELNGELRNRQYLVEQLTKAHVN--------------DVNFTPF-----KYQLSPS 328 V + + R Q + +L A V F + S Sbjct: 381 MIEVFQSSTGTRQAQVHLRELETAATTYRGIYETFLTRFTQSVQQQSFPSTEARVVTLAS 440 Query: 329 LPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADHLV 377 P + P + + L+A+ G + G R M+ R + ++ Sbjct: 441 PPSVRSSPKTNLTLALAAISGLTLGILGAFARDRMSRRIHTRAQLETIL 489 >UniRef50_A1WZL7 Lipopolysaccharide biosynthesis n=1 Tax=Halorhodospira halophila SL1 RepID=A1WZL7_HALHL Length = 518 Score = 44.8 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Query: 16 DYPL--ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILP--QKWTSAAVV 71 D+P P ++EI L++L VL R K + V G +++ Q++ SA + Sbjct: 19 DFPAEWQDPRDDEISLIDLWLVLMRRKWVIAGVFLVCVVGGAAYAYLDEPGQRYVSALEI 78 Query: 72 -TPPEPVQ 78 T P Sbjct: 79 GTYPTGSD 86 >UniRef50_Q5SKK2 Putative uncharacterized protein TTHA0641 n=1 Tax=Thermus thermophilus HB8 RepID=Q5SKK2_THET8 Length = 629 Score = 44.8 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 28/202 (13%), Positives = 70/202 (34%), Gaps = 13/202 (6%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI-LPQKWTSAAVVTPPEPVQ 78 + E+ L +++ +L R K ++ + F L+ F + S A ++ Sbjct: 1 METPSEELTLRDILEILKRQKAWILTLPLLFGAVALIYGFFVAEPTYASTATLSVAPVQV 60 Query: 79 WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 +LE+ + + + + A + +L +E + + + Sbjct: 61 QAQLEQRIQVQQATPITFEGLKALALSEEAVGEVWEALRKEGRLPTRWQ----------D 110 Query: 139 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFT--APTSEEAQTVLSGYIDYIS 196 R + + ++ D + + P+ SFT AP E A + +++ + Sbjct: 111 QGNLRGVERMLRDLEVKDISPRVQAANPNQVPPIVASFTVKAPDPEVAAEAANLWVEAVK 170 Query: 197 TLVVKESLENVRNKLEIKTQFE 218 V + L+ ++ L + Sbjct: 171 RKVNEIPLQRLKASLAALEEQL 192 >UniRef50_Q15NN8 Protein-tyrosine kinase n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15NN8_PSEA6 Length = 708 Score = 44.8 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 39/303 (12%), Positives = 101/303 (33%), Gaps = 41/303 (13%) Query: 27 IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSF 86 +D+ ++++ LWR K ++ A G LP+ + +++++ L S Sbjct: 15 LDIFDILTFLWRKKFRIIITAGLLASLGAYYVIHLPKIYVASSILLLSAKDSGLTLPSSL 74 Query: 87 TKLRVLDLDIKIDRTEAF--NLFIKKF---QSVSLLEEYLRSSPYVMDQLKEAKIDELDL 141 + + + + E F++ ++ L EY +S+ K+ +L Sbjct: 75 SAITSGEDTRQDTYIEFMRSRQFVQTVVDDLALYNLHEYQQSTDGGYVSEKDYATTKLLK 134 Query: 142 HRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLS-------GYIDY 194 ++ LS ++ + T A + + Y Sbjct: 135 QFSVSKLSNT------------------DMLKITVESLTPSSAAEIANHIGPAFFAYYAL 176 Query: 195 IS-------TLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIA 247 I+ + + + L ++ L +++ +D + ++ + + I+ Sbjct: 177 INRQKADSKSQWLNDQLNELKTSLS-QSEERLLTFLRDNELVDVESQVDLAKSEIAGLIS 235 Query: 248 NAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQ 307 I + V + ++ S G ++ + + +L +Q L+E Sbjct: 236 QKIHIDRAVAESQGSMVQLATIS---GGQQDYLQIPAIQNNALIRDLRIRRGQQQLLMEG 292 Query: 308 LTK 310 +TK Sbjct: 293 VTK 295 >UniRef50_Q13QA8 Protein-tyrosine kinase n=3 Tax=Burkholderia RepID=Q13QA8_BURXL Length = 736 Score = 44.4 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 51/300 (17%), Positives = 100/300 (33%), Gaps = 29/300 (9%) Query: 77 VQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKI 136 + T+ ++ L + A F S L LRS+ + ++ K++ I Sbjct: 193 GDVGVAAQGMTRYGLVQLKVNRMVARAGTSFNLARASTQLTAADLRSALDISEKAKQSGI 252 Query: 137 DELDLH--RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDY 194 + L A + + + D S L F + L G +D Sbjct: 253 IAISLEGADAAKTAATVNRVASIYVQRNVDRKSAQAQQMLQFLGEQLPQ----LRGDLDE 308 Query: 195 ISTLVVKESLENVRNKLEIKTQFEKEKL---AQDRIKTKNQLDANIQRLN------YSLD 245 EN LE + + + + ++ + Q A QR ++D Sbjct: 309 AEAKYNAFRTENGTVDLEAEGRLLLQSIVDSQTRLVELQQQRSALAQRYTTQHPSVQAID 368 Query: 246 IANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLV 305 A A +KK + + V P+ ++ L + + V +L +L + + Sbjct: 369 -AQIADLKKRQGAFNEKVAALPNVQ--------QQALRLMRDVRVNTDLYTKLLDSTQQL 419 Query: 306 EQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 L + +V Y V P K ++++LS +IG ++ C +R + Sbjct: 420 HVLKAGQLGNVR--TVDYAEVAERSV---KPKKTLVIVLSGVIGLLLGCSIAFVRSTLNR 474 Score = 41.7 bits (96), Expect = 0.049, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%) Query: 22 PSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQE 81 P EI L ++I++L + ++ A G+ +F+ + + ++ Q Sbjct: 13 PGEKEITLSDVIALLGENRLLIVLTTAAMLFLGVAYAFVATPLYKADVMIQVDSDPGNQT 72 Query: 82 LEKSFTKLRVL 92 L L L Sbjct: 73 LNDKLGDLASL 83 >UniRef50_B0P2G1 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P2G1_9CLOT Length = 240 Score = 44.4 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 81/241 (33%), Gaps = 17/241 (7%) Query: 17 YPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFA-CAGLLISFILPQKWTSAA---VVT 72 Y L + EIDL L L + ++ FA +GL+ F + ++S A VV+ Sbjct: 2 YELENDDEIEIDLRELFLALKKKIVWILLTAIVFAGASGLITKFAMTPIYSSTAQLYVVS 61 Query: 73 PPEPVQWQEL--EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQ 130 Q +L T+ ++ + + + L ++ +P Sbjct: 62 KGGLSQLTDLTMGSQLTQDYMVIVKTRPVLEQVIADLKLDMDYKELEKKITVENPSDTRI 121 Query: 131 LKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLS- 189 ++ D+ ++++ + V +K + T ++ A + + Sbjct: 122 MQITITDKDA--ALAQSITQDLAEVTAKTVAEKMDVKSPTIIEKAYKADKPDSPSLKKNV 179 Query: 190 ------GYIDYISTLVVKESLEN--VRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLN 241 G+I + +V++ + + ++ + K +K + ++R Sbjct: 180 LIGAVLGFILMAAAIVIQYLMNDTILKEEDIEKYLGINTLAQLPLVKGTTKRTKKVKRAR 239 Query: 242 Y 242 Sbjct: 240 E 240 >UniRef50_B2I037 ATPase n=12 Tax=Acinetobacter RepID=B2I037_ACIBC Length = 728 Score = 44.4 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 37/244 (15%), Positives = 79/244 (32%), Gaps = 23/244 (9%) Query: 131 LKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVL-- 188 L D+ + + + A+ A + + S ++ TL F + + L Sbjct: 243 LSYQGQDQEHITKVLNAILATYSAQNI------ERRSAESAQTLKFLDEQLPDLKKQLDD 296 Query: 189 --SGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDI 246 + + + + L E +K ++ + + + Sbjct: 297 AERQFNKFRQQYNTVDVTKESELYLTQSITLETKKAELEQKQAEMAAKYTAEHPAMREIN 356 Query: 247 ANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVE 306 A I K + +K PD + L++ + V +L L N + Sbjct: 357 GQLAAINKQIGELNSTLKQLPDVQ--------RQYLQLYREVEVKTQLYTALLNSYQQLR 408 Query: 307 QLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASR 366 + +V + PV+ P K +++ILS +GG + LLR + + Sbjct: 409 IAKAGEIGNVRI-----VDTAVEPVEPIKPKKLLVLILSVFVGGFIGALIALLRNMLRTG 463 Query: 367 KQDA 370 +D+ Sbjct: 464 IKDS 467 >UniRef50_C5NWJ9 Capsular polysaccharide biosynthesis protein CpsC n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NWJ9_9BACL Length = 232 Score = 44.4 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 69/206 (33%), Gaps = 13/206 (6%) Query: 26 EIDLLNLISVLWRAKKTVMAVVFAFACAGLLIS-FILPQKWTSAAVV----TPPEPVQWQ 80 ++D++ L+ +W K ++ V F A L S F++ +++S V + Sbjct: 10 QLDIMLLLRRIWEKKVLIVLVTLLFTAASLAYSIFLVTPQYSSTTKVYVVNQKKDDKAIT 69 Query: 81 ELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYL--RSSPYVMDQLKEAKIDE 138 + L V D I + +K + + S D + Sbjct: 70 TQDVQLGSLLVKDYKEIILSNKVMEDAAEKSGTEITARQLAGKVSVDAPKDTRIISITVR 129 Query: 139 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTV-----LSGYID 193 + L+ +K V + K + T+ A TS + + L+ + Sbjct: 130 DKDPQVASDLANTVKEVSADQIKDVTKIEDVTTLE-EAKAATSPSSPNIPKNGALATALG 188 Query: 194 YISTLVVKESLENVRNKLEIKTQFEK 219 +I + E + ++++ E+ Sbjct: 189 FILAVAGVILFELLDDRVKRAEDIEE 214 >UniRef50_Q3K9H3 Tyrosine-protein kinase n=4 Tax=Pseudomonadaceae RepID=Q3K9H3_PSEPF Length = 740 Score = 44.4 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 62/182 (34%), Gaps = 15/182 (8%) Query: 184 AQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYS 243 A L+ Y V SLE ++ L E + + Q Y Sbjct: 304 ASDALNAY--QTHGKTVNISLET-QSVLGQSVALETRISELKLQQAEMDRKFTKQHPAYR 360 Query: 244 LDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQY 303 + + + S V+D P L L + + V +++ +L N+ Sbjct: 361 ALMTQIGELTQQQRSLEGKVQDLPATQQEL--------LNLTRDVEVASQIYTQLLNKSQ 412 Query: 304 LVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAM 363 ++ + V +V L P KA+IV+++ +G V VLLR ++ Sbjct: 413 ELDIIRAGAVGNVRLVD---TADVDL-TSPVKPKKALIVLIATFLGAFVGVALVLLRKSL 468 Query: 364 AS 365 + Sbjct: 469 SK 470 Score = 43.6 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 1/71 (1%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVV-TPPEPVQWQEL 82 + IDLL + L K + A AF G+ + + + + A+V P+ Sbjct: 14 QDSIDLLGIFGSLIDQKWLIGAFTGAFMMTGVAYAILATPVYLANALVQVEPKKNDMLGF 73 Query: 83 EKSFTKLRVLD 93 + L Sbjct: 74 SDLNSMLGGQS 84 >UniRef50_C5CVD8 Exopolysaccharide transport protein family n=2 Tax=Variovorax paradoxus S110 RepID=C5CVD8_VARPS Length = 755 Score = 44.4 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 41/318 (12%), Positives = 100/318 (31%), Gaps = 18/318 (5%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 +++ N + P P A ++ I L LI ++ K V A+ GL+ + Sbjct: 6 VNTSNAARIGQPVAPSTPGA--GDDNIHLSELIDIVLDHKWLVTAITALSLVLGLVYILL 63 Query: 61 LPQKWTSAAVV-TPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEE 119 + S +V + + L + + + + +V Sbjct: 64 STPVYQSNLLVQVEDAAADAKGFLGETSTLFDVKTPATGEIQVIRSRMVIGA-AVDQTRA 122 Query: 120 YLRSSPYVMDQL------KEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT 173 Y+ + P + L + + + E +S K K +D + Sbjct: 123 YIEAKPNYLPILGPWLARRASGLSEPGFLGMSGYVSGKEK-IDVARFDVPPALEDEEPFV 181 Query: 174 LSFTAPTSEE-AQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQ 232 L+ + L + L + L++ +++ + K + ++ Sbjct: 182 LTAQGQGKYTLSHDALDQPLAGTVGLPLHHVLDD--GAIDLLIDKLEGKPGAQFVVSRAS 239 Query: 233 LDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSI--SLGADGIERKL--EIEKAV 288 I+ L L + + + + D I ++G +++ + + +A Sbjct: 240 QLHTIEDLQKRLQLIEQGKQSNVISAALEDSDRDRLSRILNAIGDQYVQQNVERKAAEAQ 299 Query: 289 TDVAELNGELRNRQYLVE 306 + LN +L + +E Sbjct: 300 KTLVFLNEQLPEFKRQLE 317 >UniRef50_Q1NTS5 Lipopolysaccharide biosynthesis n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NTS5_9DELT Length = 260 Score = 44.4 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 7/86 (8%) Query: 6 IKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKW 65 ++ + P Y ++EI LL+L L R K + V A A + + Sbjct: 1 MQPQNTQPAPYY------DDEISLLDLWRTLARRKLIIAVVSAAVMLAAGAYLLLTTPLY 54 Query: 66 TSAAVVTPPEPV-QWQELEKSFTKLR 90 S AV+ + EL + LR Sbjct: 55 ESRAVIQVGSMAGETGELIEDPNILR 80 >UniRef50_B1M5X9 Lipopolysaccharide biosynthesis protein n=1 Tax=Methylobacterium radiotolerans JCM 2831 RepID=B1M5X9_METRJ Length = 785 Score = 44.4 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 26/185 (14%), Positives = 63/185 (34%), Gaps = 24/185 (12%) Query: 186 TVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLD 245 + Y+D + + ++++ +L + + +D K L ++RL SLD Sbjct: 326 QLRRQYVDLV------QRADDLKRRL-GPDHEAVQAIQRDIQAAKQSLRTELERLAVSLD 378 Query: 246 IANAAGIKKPVYSNGQAVKDDPDFSI-SLGADGI---ERKLEIEKAVTDVAELNGELRNR 301 Y +A +D + +L + + +++ ++ + N Sbjct: 379 ---------HDYEVAKAREDSMTAAFDALISKTLIMSNARVKAKELDRTAETYDQIYTNL 429 Query: 302 -QYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR 360 Q ++ + + + P P P ++I++L L+G G R Sbjct: 430 LQRYIDAVNQQSYPQPSAHVITPATVPESP---SAPRGSLIMLLGLLVGTGFGVSGAFAR 486 Query: 361 YAMAS 365 + Sbjct: 487 HWFDR 491 >UniRef50_Q989A8 Succinoglycan biosynthesis transport protein n=1 Tax=Mesorhizobium loti RepID=Q989A8_RHILO Length = 745 Score = 44.0 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Query: 27 IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSF 86 ID + ++ + R+K ++ A G+ I+ P+K+ + A + +P + ++ Sbjct: 46 IDPMQVVRGIARSKLLIITTTLIGAGLGIAIALSTPKKYEATAELIV-DPRDLKLTDRDL 104 Query: 87 TK-LRVLDLDIKIDRTEA 103 T+ + D + I + Sbjct: 105 TQNVVASDATLAIVENQV 122 >UniRef50_A0NMI4 Probable succinoglycan transport protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NMI4_9RHOB Length = 832 Score = 44.0 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 42/321 (13%), Positives = 91/321 (28%), Gaps = 34/321 (10%) Query: 43 VMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTE 102 V+A A +S K + + Q EL + R D + Sbjct: 174 VLAAKVANTIVDEYLSVQSSAKRQTTEQASAALEPQIVELRREVQAARQAVSDFRARADL 233 Query: 103 AFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKK 162 I ++ +S D + L+ + Sbjct: 234 L----IGADNIPLNQQQLAETSTAYSDAQSAKAESQAKADLIRELLNSGASLETASDVLN 289 Query: 163 KDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKL 222 + + +E + T+L ++ ++ L + +L + + + L Sbjct: 290 SALIQRLRERQVEIQSNIAELSITLLP---NHPQLKALQSQLGDYDRQLRSEARKILQGL 346 Query: 223 AQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKL 282 D + A +RL+ A + + + + GA+ +L Sbjct: 347 ENDAKVADQRAKALGERLDELKTAAAKSNADQARLAE-----------LERGANAKAAQL 395 Query: 283 EIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIV 342 + L + Q +L + + S+PV+ P Sbjct: 396 DQL------------LLSYQEADSRLRAQVLPADA----RIISRASVPVEPASPKILAST 439 Query: 343 ILSALIGGMVACGGVLLRYAM 363 I++AL+ ++ C VL+R + Sbjct: 440 IIAALVTFILGCAFVLMREFL 460 >UniRef50_Q11F49 Lipopolysaccharide biosynthesis n=1 Tax=Chelativorans sp. BNC1 RepID=Q11F49_MESSB Length = 790 Score = 44.0 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 13/105 (12%) Query: 275 ADGIERKLEIEK--------AVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPF----- 321 + +L+ K A ++AEL + + E L + + + F Sbjct: 374 EKLLSEQLDALKKTAAGTNLARVELAELESRATTYRRMYESLLQQLIIALQKQSFPVGEV 433 Query: 322 KYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASR 366 + + + P+ K P +++ S L+G LR + R Sbjct: 434 RMVTAATPPLAKTWPKTTLVIPFSMLLGLAAGVSLAALREVLDRR 478 >UniRef50_B3PJL7 Putative chain length determinant protein EpsF n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PJL7_CELJU Length = 450 Score = 44.0 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 40/260 (15%), Positives = 89/260 (34%), Gaps = 21/260 (8%) Query: 114 VSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT 173 +L + + +E I + + + + + + + + S S Sbjct: 176 TALRAALMEKQNALASYQEEHGIVDNE-RVDLESAKLAALSSLLTSIQNERLDSESRSTQ 234 Query: 174 LSFTAPTSEEAQTVLSGYIDYISTLVVKES--LENVRNKL-EIKTQFEKEKLAQDRIKTK 230 LS + AQ + + IST +V+ L + +++ Q+ + + D +K + Sbjct: 235 LSAATRNANSAQALDDPQVQRISTQLVQAQARLAELGSQVGNNHPQYRQAQAEVDTLKRQ 294 Query: 231 NQLDANI----QRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEK 286 + R + +L +K + + + + I + + ++++ + Sbjct: 295 LNRTLELVNTSLRSSVALSQTREEQLKTELAAQKEQLLQLNR--IRNQRNLLRQEVDSAQ 352 Query: 287 AVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSA 346 A D A + + Q A +N N PS P P AI ++L+ Sbjct: 353 AAYDAALTRATQTRLESQISQTDIALLNAANL--------PSRPT---APKTAITLVLAL 401 Query: 347 LIGGMVACGGVLLRYAMASR 366 + G M+ G L R Sbjct: 402 VAGLMLGTGLALCLEWFDRR 421 >UniRef50_A3JHV6 Putative uncharacterized protein n=1 Tax=Marinobacter sp. ELB17 RepID=A3JHV6_9ALTE Length = 260 Score = 44.0 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 9/114 (7%) Query: 247 ANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAE-LNGELRNRQYLV 305 A+AA I + +K D S+ E +E + D E L ++ L Sbjct: 136 AHAALIDYLSRYQAERIKQDRV-SLERQMKSAETIIEALRGQPDTGEALAAAIQRVAGLE 194 Query: 306 EQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLL 359 L +V +K GP +++IVIL+ L+GGM+ V + Sbjct: 195 SALENLDETEVLVQS-------RQSAEKTGPKRSLIVILATLLGGMLGVFMVFM 241 >UniRef50_A0LGX2 Lipopolysaccharide biosynthesis n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LGX2_SYNFM Length = 509 Score = 44.0 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 100/303 (33%), Gaps = 22/303 (7%) Query: 29 LLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTK 88 L +L+ V ++ K ++++ L+ + LP K+ +++ + ++Q Sbjct: 39 LRDLLIVFFKHKYMIISIFCLAVILTPLVYYFLPAKYEASSTLMFRYGQEYQS-----PM 93 Query: 89 LRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRS--SPYVMDQLKEAKIDELDLHRAIV 146 + +++ E + + S L E L+S + +L+ + + Sbjct: 94 VSGEQTPVRVGLQEILHSELAILSSTDLKERLLKSLGIENIYPKLRAFSDEPVKQLEYAK 153 Query: 147 ALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYI-DYISTLV---VKE 202 E+ V + T++F A V++ + YI+ V Sbjct: 154 VFFERDLHVQAGRN--------SNLITVTFQNADPGTAAKVVNSLVAAYIARRVEILHDS 205 Query: 203 SLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQA 262 + +K + ++ + K Q + + ++ + Sbjct: 206 RPLQLLDKKVAEYLDRLKRSEGELQAFKQQHQVFAFDEQRDMLLKERMNLETTARTTQSL 265 Query: 263 VKDDPDFSISLGA--DGIERKLEIEKAVTDVAELNGELRNRQYL-VEQLTKAHVNDVNFT 319 VK+ +L + G+ L + EL +L Q E L+K N+V T Sbjct: 266 VKELRQKLSTLESQLKGVAASLPVASENDPRNELEMQLVTLQRREQELLSKYKENNVFVT 325 Query: 320 PFK 322 + Sbjct: 326 SVR 328 >UniRef50_A7B2P0 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A7B2P0_RUMGN Length = 242 Score = 44.0 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 2/83 (2%) Query: 26 EIDLLNLISVLWRAKKTVMAVVFAFACAGLLIS--FILPQKWTSAAVVTPPEPVQWQELE 83 EIDL+ L VL + ++ + A + F+ PQ ++ + V ++ Sbjct: 11 EIDLIELFHVLLKKAWVILLCLVIGAVTVGGYTKLFVTPQYQATSTIYVLGNSVSMSGVD 70 Query: 84 KSFTKLRVLDLDIKIDRTEAFNL 106 + +K D + N Sbjct: 71 LTLSKQLTADFSVLAKSRPVMNK 93 >UniRef50_C0BRP2 Putative uncharacterized protein n=2 Tax=Bifidobacterium RepID=C0BRP2_9BIFI Length = 506 Score = 43.6 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 66/202 (32%), Gaps = 29/202 (14%) Query: 175 SFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQ--DRIKTKNQ 232 +F AP A + Y + V ++ N+ + + + ++ T++ Sbjct: 62 TFLAPPKYSA--TAQVFATYSDSSVQDNNISNINS----ASTYITNQIQSYPTLATTESV 115 Query: 233 LDANIQRLNYSLDIANAAG---IKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVT 289 L I L +AN AG + P + + + K + Sbjct: 116 LKPVIDDLGLDTTVANLAGQLTVTNPTNTAFVNIT---------------AETGDAKQAS 160 Query: 290 DVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIG 349 D+A E + + V + + P+ P A+ + + + G Sbjct: 161 DIANSVAESLSNVVEKSLYASGKESPVKLSV---VQRAAEPISPSSPKVALYLAVGLVAG 217 Query: 350 GMVACGGVLLRYAMASRKQDAM 371 ++ L+R MA+R ++A Sbjct: 218 LILGVFATLIRDLMATRVEEAS 239 >UniRef50_A3W156 Putative succinoglycan biosynthesis transport protein ExoP n=1 Tax=Roseovarius sp. 217 RepID=A3W156_9RHOB Length = 632 Score = 43.6 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 55/381 (14%), Positives = 112/381 (29%), Gaps = 66/381 (17%) Query: 15 PDYPLASPSNNEID-LLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVV-- 71 PD SP+ + L +L++ R + +M GL+ P + SAA V Sbjct: 17 PDTLNRSPAQDRTTTLGDLLAAARRQRWPLMLCTALGLGLGLVKHMTTPPLYYSAATVLV 76 Query: 72 -------------TPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNL---FIKKFQSVS 115 T P L LR L L ++ R + + F+ +S Sbjct: 77 DVRMDESGGEITPTTPFLRNDTSLLNEIQVLRSLRLAEEVARRLSLHETPIFLNPPES-- 134 Query: 116 LLEEYLRSS-PYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 174 L L + V + + L + A + K A+ D + + Sbjct: 135 LARSMLSAVLDAVKNVIGADPETPPPLPGSSEASAIKRAALILQRDVGIDRIGQSFTIDI 194 Query: 175 SFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLD 234 S+ P A +++ Y + + L K + + + Sbjct: 195 SYIGPEPALAAAIVNTY-----------AESYLAAHLNAKMEVTARMAEWMQARIG---- 239 Query: 235 ANIQRLNYSLDI-ANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAE 293 +QR + ++ + A A + P + + ++ + + Sbjct: 240 -ELQRESEAIQVRAEALRAQTPPDTKAL--------------KALAQRAANLETLQQTLS 284 Query: 294 LNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVA 353 E+ + + ++P K D P V ++ ++G M+ Sbjct: 285 SRYEMVTIEGSYPVTNG-----------RILSEAAVPKKPDLPKLWQSVAIATILGFMIG 333 Query: 354 CGGVLLRYAMASRKQDAMMAD 374 +LR + + D Sbjct: 334 FVIAILR--ETRERAFRVGED 352 >UniRef50_UPI000182721C cryptic autophosphorylating protein tyrosine kinase Etk n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI000182721C Length = 732 Score = 43.6 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 4/88 (4%) Query: 14 FPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTP 73 +Y A+P +E+D + L+ + ++ + F +F + + A+V Sbjct: 6 TDNYGAAAPQASEVDFVRLLGEAIDHRVKIVCITLLFTLLAGAWAFFTTPVYQADALVQ- 64 Query: 74 PEPVQWQELEKSFTKLRVLDLDIKIDRT 101 ++ ++ L LD + D T Sbjct: 65 ---IESKQENGLLKNLGQLDSGLLPDAT 89 Score = 41.7 bits (96), Expect = 0.050, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 94/262 (35%), Gaps = 25/262 (9%) Query: 108 IKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPS 167 I ++E + S + L D + + + ++ + + +D S Sbjct: 212 INALSKSFTVKEMAKQSGMLALTL--TGKDPQKITKVLNGITSNFLKQNIARQEAQDTRS 269 Query: 168 L-YTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDR 226 L + L + +EA+ L+ Y ++ ++V LE K ++ +++ Sbjct: 270 LAFLERQLPKISGELDEAEERLNAY---------RKQRDSVDLTLEAKAILDQVVNVENQ 320 Query: 227 IKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEK 286 + +A I +L + + Q ++++ + + EI + Sbjct: 321 LNELTFREAEISQLFK-----KDHPTYRALREKRQTLENERSRLNHRVSTMPTTQQEILR 375 Query: 287 AVTDVAE---LNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVI 343 DV + +L RQ + + + +V + + P + P KA+I++ Sbjct: 376 LSRDVESGRTIYLQLLTRQQELNISRSSAIGNVRII----DQAETQP-EPIKPKKALIIV 430 Query: 344 LSALIGGMVACGGVLLRYAMAS 365 L + G ++ G V+ A+ Sbjct: 431 LGFVAGLALSLGYVIASVALKR 452 >UniRef50_Q08U06 Chain length determinant protein n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q08U06_STIAU Length = 498 Score = 43.6 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 5/94 (5%) Query: 278 IERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVN-DVNFTPFKY---QLSPSL-PVK 332 + E A + +L L +Q +++++ A + ++ FKY L+P+ P K Sbjct: 379 LPAISENPSAAVSLEQLRSRLSAQQQILKRIDSAKLERNIAMRSFKYRFTLLTPAEFPRK 438 Query: 333 KDGPGKAIIVILSALIGGMVACGGVLLRYAMASR 366 P II + + + G ++ L R ++ R Sbjct: 439 PIKPNAIIISLGAVVAGLVLGVFAALARDVLSGR 472 >UniRef50_P33698 Succinoglycan biosynthesis transport protein exoP n=7 Tax=Rhizobiaceae RepID=EXOP_RHIME Length = 786 Score = 43.6 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 78/259 (30%), Gaps = 22/259 (8%) Query: 6 IKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKW 65 +KQ S P S+ IDL L++ ++R + V A V F G + Sbjct: 7 MKQRSVPLSSIMPSEEQSDGFIDLDRLVAAVFRRARLVAAFVVLFIALGAAYLLFATPYY 66 Query: 66 TS-AAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSS 124 TS ++ ++ E E + ++LD E + V L+ L + Sbjct: 67 TSMTQILLDENLSKYAEEEPTPVNSQMLD-TQIASAVEILKSGELALRVVDKLK--LSEN 123 Query: 125 PYVM-------DQLKEAKIDELDL--------HRAIVALSEKMKAVDDNASKKKDEPSLY 169 ++ D +KE L A + A S + S Sbjct: 124 DTILNPPRSPVDMVKEWLKTATGLFSGGPDVTEEAARNGRRQKAAAIIQQSLAVERVSRS 183 Query: 170 TSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKT 229 + ++F + A T+ GY S + + N ++ + Sbjct: 184 SVVAVAFRSSDPLLAATIARGY---ASAYLTDQLNANFEATERASVWLQERLTDLQQRSQ 240 Query: 230 KNQLDANIQRLNYSLDIAN 248 L+ R L A Sbjct: 241 AAALEVAHFRAENGLTAAR 259 >UniRef50_B1FTG2 Exopolysaccharide transport protein family n=4 Tax=Burkholderia RepID=B1FTG2_9BURK Length = 750 Score = 43.6 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 41/309 (13%), Positives = 95/309 (30%), Gaps = 16/309 (5%) Query: 11 DAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAV 70 + P A N+++L+ + V+ + V+A+ G+ SF+ P + S + Sbjct: 2 NEFSPKSQAAGSGQNDVNLVRYVDVVLANRWLVLAITSMVLAIGVAYSFLAPPVYQSDIL 61 Query: 71 --VTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVM 128 V P + L + L + + + + +V L Y+ + P Sbjct: 62 LQVEQESPTNTKSLLGDVSSLFDVKTETTAQIEVLRSRMVVG-NAVDNLRLYISAEPKRF 120 Query: 129 DQLKE-----AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEE 183 + K + + +++D ++ S Sbjct: 121 PLIGNWIARWNKSLSQPGLLGVGGFAWGNESIDVGTFDVPEDLEGDDFKLTSLGGDRYVV 180 Query: 184 AQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYS 243 Q L I + K+ ++ Q + + +N ++ L Sbjct: 181 DQKQLDAPI--YGRVGETIVSNESTGKITLRVQALNANPGTEFVLVRNARLKTLENLQDK 238 Query: 244 LDI---ANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKL--EIEKAVTDVAELNGEL 298 L I +GI G + ++G + + + + +A +A L+ L Sbjct: 239 LFIVEKGKQSGIIG-ASLTGTDRQLTAKILNNIGDEYVAANIARKAAEAEKSLAFLSDLL 297 Query: 299 RNRQYLVEQ 307 + +E+ Sbjct: 298 PQLKSELEE 306 >UniRef50_B3QV13 Lipopolysaccharide biosynthesis protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QV13_CHLT3 Length = 251 Score = 43.6 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 80/232 (34%), Gaps = 10/232 (4%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEP---VQWQ 80 + +I+LL + ++L K +++V +L + + ++ P + + Sbjct: 4 DEKINLLEVWNILIGRKVIILSVTLFVQFLTVLYALFATPIYRGEVLLAPAQEDNRSKMS 63 Query: 81 ELEKSFTKLRVLD-LDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEA-KIDE 138 L + L L D + + +I +S + + +++ + ++ DE Sbjct: 64 ILAAQYGALASLAGFDFGGLNSNKIDEYIALIKSRAFIADFINEENLMPILFEDDWNKDE 123 Query: 139 LDLHRAIVALSEKMKAVDDNASK--KKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 196 + KA + + D+ +LS S A + + + Sbjct: 124 NKWMVEKNDIPTIGKAYELFSKDIITIDKDKESGLVSLSIDWRDSVLAANWANKIVKKFN 183 Query: 197 TLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIAN 248 + +++ + L+ K+ ++ KN L I+ +L IA Sbjct: 184 NYQKRVQVQDSKKSLD---FINKQLENTSIVENKNTLYKLIEMNTKTLMIAE 232 >UniRef50_Q0AE90 Lipopolysaccharide biosynthesis n=2 Tax=Nitrosomonas RepID=Q0AE90_NITEC Length = 747 Score = 43.6 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 6/77 (7%) Query: 15 PDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVV--- 71 PD P + +++EIDL L+ +L K+ + + F G IS + + + +++ Sbjct: 6 PDMP-SDQNSDEIDLGELLDILADNKQLIFIITFITCMIGAAISLLSLPIYKADSLLQVR 64 Query: 72 --TPPEPVQWQELEKSF 86 T Q L F Sbjct: 65 ENTQSMVEQLDSLSTFF 81 >UniRef50_Q319N0 Uncharacterized protein involved in exopolysaccharide biosynthesis-like protein n=1 Tax=Prochlorococcus marinus str. MIT 9312 RepID=Q319N0_PROM9 Length = 558 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 48/327 (14%), Positives = 105/327 (32%), Gaps = 32/327 (9%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQW 79 S EIDL NL ++ KKT+ + G + + + W + Sbjct: 17 IDQSEEEIDLKNLFNIFIEKKKTIAGITLTSFLLGCSFALLQKKLWQGQFQIVLSGSDIN 76 Query: 80 QELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDEL 139 + + K LF ++ E + SPY++ + E + E Sbjct: 77 SSMNLALPK-----------NNPINKLFNNSSRNNINTELEILKSPYILLPIFEYVMSEK 125 Query: 140 DLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLV 199 ++ V E+ K K + L S+ + + ++ + IS + Sbjct: 126 NISDYKVNKFEEWKKDYLEVKFKNNTNILDISY--------KDNDKDLIIPVLTKISKIY 177 Query: 200 VKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSN 259 + S + K + +++ + K K + +L+ + G+ ++S Sbjct: 178 QQYSPNKKIETINTKISYLDDQIDIYKEKYK-------KSFEKALNFSFEKGLSTNLFSE 230 Query: 260 GQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHV----ND 315 D + + + IE KL+ K + D + L E++ + + Sbjct: 231 INPNIIDQNDGVLI--KNIEVKLDTLKNLEDSSALIAFSEANLISSEKIKRIKTIISEKE 288 Query: 316 VNFTPFKYQLSPSLPVKKDGPGKAIIV 342 + + V KD + + + Sbjct: 289 MQLIMYSKVYKDQDVVIKDIKKEILTL 315 >UniRef50_B2A1C4 Lipopolysaccharide biosynthesis protein n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1C4_NATTJ Length = 522 Score = 43.2 bits (100), Expect = 0.015, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 28/70 (40%), Gaps = 3/70 (4%) Query: 2 SSLNIKQGSDAHFPDYPLASPSN---NEIDLLNLISVLWRAKKTVMAVVFAFACAGLLIS 58 ++ + + D+ + + EIDL LI VL + K + ++ + + Sbjct: 7 NNQQKQSQENQERQDHTVQENQDFGEQEIDLRELIEVLLKRKWLIAGIMAVAVFLAGIFT 66 Query: 59 FILPQKWTSA 68 ++ + + + Sbjct: 67 LLIREPYVAT 76 >UniRef50_Q1ING6 Protein-tyrosine kinase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ING6_ACIBL Length = 711 Score = 42.8 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 10/101 (9%) Query: 275 ADGIERKLEIEKAVTDVAELNGELRNR---------QYLVEQLTKAHVND-VNFTPFKYQ 324 + K + E + + + + R Q L+ +L +A V ++ + Sbjct: 369 ERALFAKQKQEANQINDSAVQYGVLKREADANRDLYQTLLGKLKEAGVLAGLHSSDILVV 428 Query: 325 LSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 S +P K P + + ++L A+IG ++ LL+ ++ Sbjct: 429 DSARVPDKPASPKRLLNLVLGAVIGLILGVSIALLQDSLDR 469 >UniRef50_Q48452 Putative tyrosine-protein kinase in cps region n=16 Tax=Enterobacteriaceae RepID=YC06_KLEPN Length = 722 Score = 42.8 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 44/264 (16%), Positives = 88/264 (33%), Gaps = 15/264 (5%) Query: 106 LFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDE 165 F K+ S L+ + V DQ K+ I + + K+K + D+ S+ Sbjct: 200 EFTIKYVSKLKAIADLQENLSVADQGKDTGI---LILSYLGDDPLKIKNIVDSISEN--- 253 Query: 166 PSLYTSWTLSFTAPTSEEAQTVLSGYIDYIST---LVVKESLENVRNKLEIKTQFEKEKL 222 Y + +S A E++ L+ + + + + + + + E + + Sbjct: 254 ---YLAQNISRQAAQDEKSLEFLNKQLPMVRSDLDSAEDKLNDFRKRNDSVDLSLEAKSV 310 Query: 223 AQDRIKTKNQLDANIQRLNYSLD-IANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERK 281 + NQL+ R + K + + ++D+ A E + Sbjct: 311 LDQIVNVDNQLNELTFRESEISQLYTKEHPTYKALMEKRKTLQDERGKLNKRVATMPETQ 370 Query: 282 LEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAII 341 EI + DV ++L A + S K P K I+ Sbjct: 371 QEILRLSRDVESGRAVYMQLLNRQQELNIAK--SSAIGNVRIIDSAVTQHKPVKPKKIIV 428 Query: 342 VILSALIGGMVACGGVLLRYAMAS 365 V+ IG +++ VL+R + Sbjct: 429 VLAGLFIGLVISVSLVLVRILLRK 452 >UniRef50_Q1QD59 Protein-tyrosine kinase n=3 Tax=Psychrobacter RepID=Q1QD59_PSYCK Length = 753 Score = 42.8 bits (99), Expect = 0.019, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 1/98 (1%) Query: 9 GSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSA 68 +D+ + N+EIDL+ L+ + R KT++ G+L S + + S Sbjct: 2 NTDSKNVSNSASKEDNDEIDLMALLFAILRGWKTIVFFAVLGLIVGILYSRYVNPTFQSD 61 Query: 69 AVV-TPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFN 105 A++ + L ++L + E Sbjct: 62 ALIQIDEQSKGISALGSDISELIGSEASKAQTEAELIR 99 >UniRef50_C8QGU5 Capsular exopolysaccharide family n=1 Tax=Pantoea sp. At-9b RepID=C8QGU5_9ENTR Length = 728 Score = 42.8 bits (99), Expect = 0.019, Method: Composition-based stats. Identities = 10/74 (13%), Positives = 27/74 (36%) Query: 16 DYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPE 75 + + + + EIDL + L +K ++ V ++ + + + + A++ + Sbjct: 6 KHKIVTAKSEEIDLGRIYGGLLDHRKLIIGVTSVVTLLAIIYALFITPVYQANAMIQIEQ 65 Query: 76 PVQWQELEKSFTKL 89 L L Sbjct: 66 KQGNALLNDISQIL 79 >UniRef50_A3VU42 Exopolysaccharide biosynthesis protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VU42_9PROT Length = 753 Score = 42.8 bits (99), Expect = 0.020, Method: Composition-based stats. Identities = 30/246 (12%), Positives = 81/246 (32%), Gaps = 27/246 (10%) Query: 31 NLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLR 90 ++ ++ K ++A+ + ++ + + A + + + + Sbjct: 45 QMVRIVLSFKWLILAITLLGSGISAVMVLNATPLYRTEATIEVQKQETQIIEGSNVDPVT 104 Query: 91 VLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMD-QLKEAKIDELDLHRAIVALS 149 + D + + E S SL E + + + D + + +D A + Sbjct: 105 IADAEFMATQFELLK-------SRSLAERVVETLGLLNDPRYADQSLDREARLNAATSKV 157 Query: 150 EKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRN 209 + AV + +T+P EA + + ++ +++SL+ Sbjct: 158 RRNLAV--------APSGRSRVMRVIYTSPDPREAARIANA----VTDNFIQQSLDRKYA 205 Query: 210 KLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDF 269 +F +E++A ++ + ++ A A I + + V D D Sbjct: 206 TTAYARRFLRERIAATKVALEESERELVE-------YARAQNILQLESGERRNVNLDSDS 258 Query: 270 SISLGA 275 ++L Sbjct: 259 IVALNT 264 >UniRef50_B8D182 Lipopolysaccharide biosynthesis protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D182_HALOH Length = 380 Score = 42.8 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 72/220 (32%), Gaps = 13/220 (5%) Query: 26 EIDLLNLISVLWRAKKTVMAVVFAFACAGLLI-SFILPQKWTSAAV--VTPPEPVQWQEL 82 EIDL I VLW+ + ++ ++ + + + A + PP + Sbjct: 11 EIDLREYIRVLWKGRYLILGLMVIALLITGVYFKLFTSPVYEARATLLIIPPTY----KT 66 Query: 83 EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLH 142 L + I+K + ++ E +S E Sbjct: 67 SLEVATLPLDTYKNLAMTDTMKADIIEKLKLNNIDGESYTTSDLGDKMSIEILTGSNPNR 126 Query: 143 RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKE 202 R + ++A K +P L + ++ E + + G + IS ++ ++ Sbjct: 127 R------DSLEAPLIVLKVKSKKPELASKIANTWAELFMEATRKIRKGEVREISLVIEEQ 180 Query: 203 SLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNY 242 + E++ + E+ + + +L+ +RL Sbjct: 181 FNDTREKLNEVQNKLEEFREQTRPGLVEIELEVKEKRLRE 220 >UniRef50_D0MGZ9 Lipopolysaccharide biosynthesis protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MGZ9_RHOM4 Length = 415 Score = 42.8 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 47/349 (13%), Positives = 115/349 (32%), Gaps = 15/349 (4%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE 83 ++EI LL+L V+ R ++ ++ V G++++ + P+ + + A + P Sbjct: 30 DDEISLLDLGVVIARQRRVIVVSVLVALVVGVVVALLSPKSYVAEAKLAP---SSTGSTG 86 Query: 84 KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHR 143 + + LR L + D + +++ S L R + Y+ ++ + + E R Sbjct: 87 GALSALRSFGLSLGEDEIVSPSVYPDIVGSPDFLLALARDTFYIAEEGRPMTLVEYYGRR 146 Query: 144 AIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKES 203 + + ++ + + S L EA L + S Sbjct: 147 ---SWLSYLNPLNWLSGDEGAPVRDLYSGALILPTEEEYEAIRELRE-VLSASEKAGGGL 202 Query: 204 LENVRNKLEIKTQFEKEKLAQDRIKTKNQL------DANIQRLNYSLDIANAAGIKKPVY 257 L+ + ++ + + L+ ++ + ++ L+ + Sbjct: 203 LKEGPGVITVRAETDDPYLSAAIVERAIRHLQAAINRIKTEKARQDLEFLER-KFAQVEA 261 Query: 258 SNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVN 317 QA + F + + +L E E R+ +++ Sbjct: 262 ELRQAENELARFLDA-NRNPQTAQLRAEMERLQRQVSFKEQLYRELQLQKTQAEIQVQKE 320 Query: 318 FTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASR 366 P P + G + +IV+L +G V G + + ++ Sbjct: 321 APVLSIVQPPVPPDEPSGTSRKLIVLLFLFLGVFVGLGLAFVNHWLSRP 369 >UniRef50_A5V900 Lipopolysaccharide biosynthesis protein n=1 Tax=Sphingomonas wittichii RW1 RepID=A5V900_SPHWW Length = 601 Score = 42.8 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 91/240 (37%), Gaps = 26/240 (10%) Query: 16 DYPLASPSNNEIDLLNLI--------SVLWRAKKTVMAVVFAFACAGLLISFILPQKWTS 67 D PL S + I + L +L + + V+ A G+ +++ LP + S Sbjct: 115 DGPLMSDPVDPIGDVELADGLLAYLPQILVQRRWLVLIPFIVCAGTGIGLAYGLPAHYQS 174 Query: 68 AAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYV 127 +A V V+ +EL ++ V DL + ++ S L E ++ + Sbjct: 175 SATVV----VESKELPEAIAAATVNDL-----IDQRIARIKQQILSRPGLIELIQQNDLY 225 Query: 128 MDQLKEAKIDE-LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQT 186 Q + + + +D+ R A++ +D A ++ ++ +++++FT +AQ Sbjct: 226 RSQRRSSSLSAIIDMMRDATAITPVTAGIDKLAERRGTSNTI--AFSVAFTYSDPAKAQA 283 Query: 187 VLSGY------IDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 V + +D ++ + Q + ++ + K + + R+ Sbjct: 284 VTQQFTERLLKLDSTQLAAQADATVGFLRDQAGQIQSQIGEIEGKIGEIKARNGLALSRI 343 >UniRef50_C7RNN8 Chain length determinant protein EpsF n=2 Tax=Betaproteobacteria RepID=C7RNN8_9PROT Length = 471 Score = 42.8 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 18/168 (10%), Positives = 56/168 (33%), Gaps = 7/168 (4%) Query: 199 VVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYS 258 +E+ K E ++++ + + ++ +R+ L A +++ Sbjct: 265 ARQEAKREEIGSRVGKNHPEYQRISSEIDALRERVTQETRRVTSGLGTATKVNVRRESEI 324 Query: 259 NGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNF 318 L + ++ + + + A+ + EL ++ L Sbjct: 325 RTALEAQKEK---VLALKDLRDQVSVLQKDVESAQRSYELVTQRLAQTSLES----QTQQ 377 Query: 319 TPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASR 366 T + + P++ P + +++ +G ++ LL ++ R Sbjct: 378 TNLVVLTAATPPLEPSSPRILLNTLVAIFLGTLLGVAATLLLELLSRR 425 >UniRef50_C0QSZ0 Chain length determinant protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QSZ0_PERMH Length = 288 Score = 42.8 bits (99), Expect = 0.022, Method: Composition-based stats. Identities = 44/353 (12%), Positives = 104/353 (29%), Gaps = 88/353 (24%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ 78 + +EIDL L L + K V++V F + F+ + + +V P+ Sbjct: 19 VVYYEEDEIDLYELWLTLKKRYKLVLSVTVFFILLSAVYLFLTKPVYRAEFIVKLPQ--- 75 Query: 79 WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 + + I +++ + Y+ + + L ++ Sbjct: 76 ------------------GLTSPQETKNIIDNLENLRKEKRYME----LSNLLGISQEKI 113 Query: 139 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 198 +D+ + K K + D I +S Sbjct: 114 MDIDSFSASEIRKNKNLIKVILDVYDPNI------------------------ISKLSVS 149 Query: 199 VVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQ-RLNYSLDIANAAGIKKPVY 257 +++ N K I+ + E + + + K + +I+ R+ L Sbjct: 150 ILEHLNNNRFVKERIEIRKETLRFSIEETNEKIKEIESIKDRILNDLK------------ 197 Query: 258 SNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVN 317 +KD + + + K ++ + L QL ++ Sbjct: 198 --NGRIKDLGFNPVDMDRTVLSLKEKV-----------------KNLENQLKLLRGYEIA 238 Query: 318 FTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDA 370 P +P K P KA+I+ ++++ G + + + ++ Sbjct: 239 VDPV-------VPEKPSKPKKALILAVASVSGLFLGVFLAFFAEWIENARKRR 284 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P26266 Ferric enterobactin transport protein fepE n=158... 308 2e-82 UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10... 273 7e-72 UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yers... 272 2e-71 UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enter... 259 2e-67 UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 T... 256 1e-66 UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersini... 251 2e-65 UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=En... 245 2e-63 UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 T... 231 3e-59 UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Provide... 228 3e-58 UniRef50_UPI000197BC0B ferric enterobactin transport protein Fep... 227 4e-58 UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Pr... 219 2e-55 UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannhei... 213 1e-53 UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=... 211 3e-53 UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photoba... 208 3e-52 UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0... 204 5e-51 UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio ... 199 1e-49 UniRef50_A5KZS4 Regulator of length of O-antigen component of li... 199 1e-49 UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C... 199 2e-49 UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aerom... 198 2e-49 UniRef50_Q3YTC2 O antigen chain length determinant protein n=5 T... 196 1e-48 UniRef50_A7JUL8 O-antigen chain length determining protein n=2 T... 193 8e-48 UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae Re... 192 1e-47 UniRef50_C9P0E2 Regulator of length of O-antigen component of li... 192 2e-47 UniRef50_A1JMR4 O-antigen chain length determinant n=5 Tax=Yersi... 191 6e-47 UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=1... 189 2e-46 UniRef50_Q31F07 Lipopolysaccharide biosynthesis protein Wzz n=1 ... 187 7e-46 UniRef50_Q8KN75 Wzz n=1 Tax=Pseudomonas aeruginosa RepID=Q8KN75_... 186 1e-45 UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycete... 185 2e-45 UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropn... 182 1e-44 UniRef50_Q2BJF5 O-antigen chain length regulator n=1 Tax=Neptuni... 179 1e-43 UniRef50_Q1Z8B9 Ferric enterobactin transport protein n=1 Tax=Ph... 176 1e-42 UniRef50_Q02PW5 O-antigen chain length regulator n=19 Tax=Pseudo... 176 1e-42 UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=... 172 1e-41 UniRef50_Q5R093 Chain length determinant protein n=1 Tax=Idiomar... 166 1e-39 UniRef50_C9P0B3 Lipopolysaccharide biosynthesis n=1 Tax=Vibrio c... 164 4e-39 UniRef50_Q8KNB4 Wzz n=2 Tax=Pseudomonas aeruginosa RepID=Q8KNB4_... 163 1e-38 UniRef50_P35272 Chain length determinant protein n=110 Tax=Enter... 162 3e-38 UniRef50_A4Y8H9 Lipopolysaccharide biosynthesis n=30 Tax=Gammapr... 161 4e-38 UniRef50_Q1N5G1 Lipopolysaccharide biosynthesis n=1 Tax=Bermanel... 159 2e-37 UniRef50_A1SRR6 Chain length determinant protein-like protein n=... 159 2e-37 UniRef50_Q1QWX5 Lipopolysaccharide biosynthesis n=1 Tax=Chromoha... 157 6e-37 UniRef50_Q1ID96 O-antigen chain length regulator protein (Wzz) n... 154 6e-36 UniRef50_C7RAP5 Lipopolysaccharide biosynthesis protein n=1 Tax=... 152 2e-35 UniRef50_Q04866 Chain length determinant protein n=30 Tax=Salmon... 151 4e-35 UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 T... 150 6e-35 UniRef50_C3KAZ7 Putative chain length determinant protein n=1 Ta... 145 2e-33 UniRef50_A4C8G6 OtnB protein n=1 Tax=Pseudoalteromonas tunicata ... 145 2e-33 UniRef50_Q2LWK4 Hypothetical membrane protein n=1 Tax=Syntrophus... 143 9e-33 UniRef50_A7AKH2 Putative uncharacterized protein n=2 Tax=Parabac... 140 1e-31 UniRef50_A6ASH0 OtnB protein n=10 Tax=Vibrio RepID=A6ASH0_VIBHA 139 2e-31 UniRef50_C4KCI7 Lipopolysaccharide biosynthesis protein n=1 Tax=... 138 3e-31 UniRef50_C7M6P7 Lipopolysaccharide biosynthesis protein n=2 Tax=... 137 4e-31 UniRef50_B7AIQ3 Putative uncharacterized protein n=2 Tax=Bactero... 137 5e-31 UniRef50_O66795 Putative uncharacterized protein n=1 Tax=Aquifex... 134 6e-30 UniRef50_Q5LEP2 Conserved hypothetical membrane protein n=13 Tax... 131 5e-29 UniRef50_D0YWK9 O-antigen chain length determinant protein n=1 T... 130 9e-29 UniRef50_A6F1J1 Chain length determinant protein n=1 Tax=Marinob... 129 1e-28 UniRef50_B0KTY6 Lipopolysaccharide biosynthesis protein n=1 Tax=... 128 2e-28 UniRef50_C2M1S4 Putative uncharacterized protein n=1 Tax=Capnocy... 128 3e-28 UniRef50_C1TR41 Uncharacterized protein involved in exopolysacch... 128 4e-28 UniRef50_Q1YPV1 OtnB protein n=1 Tax=gamma proteobacterium HTCC2... 127 5e-28 UniRef50_B5JNI6 Chain length determinant protein n=1 Tax=Verruco... 127 1e-27 UniRef50_C9PY96 Chain length determinant protein n=1 Tax=Prevote... 126 1e-27 UniRef50_C1F864 Chain length determinant protein domain protein ... 125 2e-27 UniRef50_P44063 Uncharacterized protein HI0866 n=7 Tax=Haemophil... 125 4e-27 UniRef50_Q21IT7 Lipopolysaccharide biosynthesis n=1 Tax=Saccharo... 124 5e-27 UniRef50_C6MYW2 Putative Wzz n=1 Tax=Legionella drancourtii LLAP... 123 7e-27 UniRef50_B9ZNL2 Lipopolysaccharide biosynthesis protein n=1 Tax=... 123 1e-26 UniRef50_A4SDR7 Lipopolysaccharide biosynthesis protein n=2 Tax=... 121 3e-26 UniRef50_A3JJA1 Lipopolysaccharide biosynthesis n=1 Tax=Marinoba... 121 4e-26 UniRef50_B3C5C8 Putative uncharacterized protein n=1 Tax=Bactero... 121 4e-26 UniRef50_B1XZS2 Lipopolysaccharide biosynthesis protein n=1 Tax=... 120 9e-26 UniRef50_D0WWA9 Putative uncharacterized protein n=3 Tax=Vibrio ... 120 1e-25 UniRef50_C5V7I4 Lipopolysaccharide biosynthesis protein n=1 Tax=... 119 1e-25 UniRef50_C4K3Z7 Regulator of length of O-antigen component of li... 117 6e-25 UniRef50_B3E8V9 Lipopolysaccharide biosynthesis protein n=4 Tax=... 115 3e-24 UniRef50_A4BIX4 Putative uncharacterized protein n=1 Tax=Reineke... 115 3e-24 UniRef50_UPI000197C816 regulator of length of O-antigen componen... 115 4e-24 UniRef50_Q2SJH6 Uncharacterized protein involved in exopolysacch... 114 7e-24 UniRef50_A7I0H6 Chain length determinant protein n=1 Tax=Campylo... 113 8e-24 UniRef50_Q2T3S0 Chain length determinant protein domain protein ... 112 3e-23 UniRef50_D0Z7Z5 Chain length determinant protein n=1 Tax=Edwards... 112 3e-23 UniRef50_A8FXK9 Chain length determinant family protein n=1 Tax=... 111 5e-23 UniRef50_Q21Z35 Lipopolysaccharide biosynthesis n=1 Tax=Rhodofer... 111 5e-23 UniRef50_Q74C20 Capsule polysaccharide export protein, putative ... 110 8e-23 UniRef50_B0VFR9 Putative uncharacterized protein n=1 Tax=Candida... 110 9e-23 UniRef50_UPI0001C34705 lipopolysaccharide biosynthesis protein n... 110 1e-22 UniRef50_C5BSK8 Chain length determinant protein n=1 Tax=Teredin... 110 1e-22 UniRef50_C9LJ77 Chain length determinant protein n=1 Tax=Prevote... 108 4e-22 UniRef50_C8PNG3 Chain length determinant protein n=1 Tax=Trepone... 108 4e-22 UniRef50_Q39VZ4 Lipopolysaccharide biosynthesis n=5 Tax=Geobacte... 107 6e-22 UniRef50_Q1ITA8 Lipopolysaccharide biosynthesis n=1 Tax=Candidat... 107 6e-22 UniRef50_Q6AS85 Putative uncharacterized protein n=1 Tax=Desulfo... 107 8e-22 UniRef50_B8KUX8 Chain length determinant protein n=1 Tax=gamma p... 106 1e-21 UniRef50_A0B7Q9 Lipopolysaccharide biosynthesis n=1 Tax=Methanos... 106 2e-21 UniRef50_A4BYL5 Putative uncharacterized protein n=1 Tax=Polarib... 106 2e-21 UniRef50_C1DT90 Ferric enterobactin transport protein n=1 Tax=Su... 105 2e-21 UniRef50_D1PA57 Chain length determinant protein n=1 Tax=Prevote... 104 5e-21 UniRef50_A4EGG2 Succinoglycan biosynthesis transport protein exo... 103 8e-21 UniRef50_B5CXQ8 Putative uncharacterized protein n=1 Tax=Bactero... 103 8e-21 UniRef50_D2QRK9 Lipopolysaccharide biosynthesis protein n=1 Tax=... 103 1e-20 UniRef50_D0MG08 Lipopolysaccharide biosynthesis protein n=1 Tax=... 103 1e-20 UniRef50_C9RR06 Lipopolysaccharide biosynthesis protein n=1 Tax=... 103 1e-20 UniRef50_C9MSS5 Chain length determinant protein n=2 Tax=Prevote... 103 2e-20 UniRef50_A4SDR9 Lipopolysaccharide biosynthesis protein n=2 Tax=... 102 2e-20 UniRef50_B0K509 Lipopolysaccharide biosynthesis protein n=14 Tax... 101 4e-20 UniRef50_Q6AS84 Putative uncharacterized protein n=1 Tax=Desulfo... 100 6e-20 UniRef50_A6TJR1 Lipopolysaccharide biosynthesis protein n=1 Tax=... 100 7e-20 UniRef50_B6B6U1 Succinoglycan biosynthesis transport protein Exo... 100 8e-20 UniRef50_B8GTU6 Putative uncharacterized protein n=1 Tax=Thioalk... 100 1e-19 UniRef50_B7RJK1 Protein-tyrosine kinase, putative n=3 Tax=Rhodob... 100 1e-19 UniRef50_C3KRX1 CPSC/CAPB subfamily ATPase n=5 Tax=Rhizobiales R... 99 2e-19 UniRef50_Q161P5 Chain length determinant domain protein n=2 Tax=... 98 5e-19 UniRef50_Q2CAF1 Putative uncharacterized protein n=2 Tax=Rhodoba... 97 1e-18 UniRef50_A4C494 Exopolysaccharide biosynthesis protein, putative... 97 1e-18 UniRef50_Q39TL3 Lipopolysaccharide biosynthesis n=1 Tax=Geobacte... 97 1e-18 UniRef50_Q2C5X1 Chain length regulator (Capsular polysaccharide ... 96 2e-18 UniRef50_A0NNU3 Putative MPA1 family protein n=1 Tax=Labrenzia a... 96 2e-18 UniRef50_Q0AW94 Capsular polysaccharide biosynthesis protein-lik... 95 3e-18 UniRef50_A4EII1 Protein-tyrosine kinase n=1 Tax=Roseobacter sp. ... 95 5e-18 UniRef50_B3ELK8 Lipopolysaccharide biosynthesis protein n=1 Tax=... 94 1e-17 UniRef50_A3N2K1 Putative uncharacterized protein n=3 Tax=Actinob... 93 2e-17 UniRef50_Q2S4Z4 Chain length determinant protein n=1 Tax=Salinib... 93 2e-17 UniRef50_A6VA35 Chain length determinant protein n=7 Tax=Pseudom... 93 2e-17 UniRef50_Q7NZZ7 Putative uncharacterized protein n=1 Tax=Chromob... 92 2e-17 UniRef50_A5FN30 Lipopolysaccharide biosynthesis protein n=1 Tax=... 92 3e-17 UniRef50_C1F294 Chain length determinant family protein n=1 Tax=... 92 4e-17 UniRef50_C8X034 Lipopolysaccharide biosynthesis protein n=1 Tax=... 92 4e-17 UniRef50_C7LVW8 Capsular exopolysaccharide family n=1 Tax=Desulf... 91 7e-17 UniRef50_C4KCH6 Lipopolysaccharide biosynthesis protein n=1 Tax=... 91 7e-17 UniRef50_B8D183 Lipopolysaccharide biosynthesis protein n=1 Tax=... 90 1e-16 UniRef50_Q13NU9 Exopolysaccharide transport protein n=1 Tax=Burk... 90 1e-16 UniRef50_A3K8W6 Chain length determinant protein, putative n=3 T... 90 2e-16 UniRef50_Q7NQT3 Putative uncharacterized protein n=1 Tax=Chromob... 90 2e-16 UniRef50_C1XU43 Chain length determinant protein n=1 Tax=Meiothe... 89 2e-16 UniRef50_A3V8G8 Protein-tyrosine kinase n=1 Tax=Loktanella vestf... 89 3e-16 UniRef50_A3SUA0 Putative uncharacterized protein n=3 Tax=Rhodoba... 88 5e-16 UniRef50_P58593 Putative tyrosine-protein kinase epsB n=7 Tax=Bu... 88 6e-16 UniRef50_B5S582 Putative tyrosine-protein kinase epsb , polysacc... 88 6e-16 UniRef50_D1B3W3 Lipopolysaccharide biosynthesis protein n=1 Tax=... 87 1e-15 UniRef50_B2IJA7 Capsular exopolysaccharide family n=1 Tax=Beijer... 87 1e-15 UniRef50_C5S677 Putative uncharacterized protein n=1 Tax=Allochr... 86 2e-15 UniRef50_B6BQX7 Chain length determinant protein n=1 Tax=Candida... 86 2e-15 UniRef50_C0VIY7 Protein tyrosine kinase n=4 Tax=Acinetobacter Re... 85 3e-15 UniRef50_C6JIE9 Predicted protein n=2 Tax=Fusobacterium RepID=C6... 85 4e-15 UniRef50_D0MHQ9 Capsular exopolysaccharide family n=1 Tax=Rhodot... 85 5e-15 UniRef50_A5UI14 Putative uncharacterized protein n=2 Tax=Haemoph... 84 8e-15 UniRef50_B8E0I3 Lipopolysaccharide biosynthesis protein n=1 Tax=... 83 2e-14 UniRef50_B5YEW0 Lipopolysaccharide biosynthesis n=1 Tax=Dictyogl... 83 2e-14 UniRef50_B1KCB3 Exopolysaccharide transport protein family n=2 T... 82 4e-14 UniRef50_C5BJM9 Putative OtnB protein n=1 Tax=Teredinibacter tur... 80 1e-13 UniRef50_C4FKG4 Lipopolysaccharide biosynthesis protein (Fragmen... 80 1e-13 UniRef50_A9EXV4 Protein tyrosine kinase n=1 Tax=Sorangium cellul... 80 1e-13 UniRef50_B8CL31 Chain length regulator (Capsular polysaccharide ... 80 1e-13 UniRef50_Q1J1I9 Protein-tyrosine kinase n=3 Tax=Deinococcus RepI... 80 2e-13 UniRef50_B9JK00 Capsule polysaccharide export transport system p... 80 2e-13 UniRef50_B2PVB4 Putative uncharacterized protein n=3 Tax=Provide... 80 2e-13 UniRef50_A9WAT9 Lipopolysaccharide biosynthesis protein n=2 Tax=... 80 2e-13 UniRef50_P58764 Tyrosine-protein kinase etk n=184 Tax=Enterobact... 79 2e-13 UniRef50_Q489D4 Tyrosine-protein kinase n=7 Tax=Gammaproteobacte... 79 4e-13 UniRef50_B6C223 Chain length determinant protein n=1 Tax=Nitroso... 78 4e-13 UniRef50_C7H2L1 Putative uncharacterized protein n=1 Tax=Faecali... 77 8e-13 UniRef50_C9PPK9 Lipopolysaccharide biosynthesis protein WzzE n=1... 76 2e-12 UniRef50_B2TEB6 Exopolysaccharide transport protein family n=5 T... 76 2e-12 UniRef50_Q1YH82 Possible exopolysaccharide biosynthesis/transpor... 76 2e-12 UniRef50_A3WQF3 Putative tyrosine-protein kinase Wzc (Fragment) ... 76 2e-12 UniRef50_A4AB87 Chain length determinant protein n=2 Tax=unclass... 75 3e-12 UniRef50_Q5P6W3 Putative uncharacterized protein n=1 Tax=Aromato... 75 3e-12 UniRef50_Q7UF18 Similar to type 8 capsule gene Cap8B n=1 Tax=Rho... 74 9e-12 UniRef50_C6NU30 Lipopolysaccharide biosynthesis n=1 Tax=Acidithi... 74 1e-11 UniRef50_A1WX76 Lipopolysaccharide biosynthesis n=3 Tax=Ectothio... 73 2e-11 UniRef50_Q72WQ0 Chain length determinant family protein n=4 Tax=... 72 3e-11 UniRef50_Q65SG7 GumC protein n=2 Tax=Pasteurellaceae RepID=Q65SG... 72 3e-11 UniRef50_A6BAV1 OtnB protein (Fragment) n=1 Tax=Vibrio parahaemo... 72 4e-11 UniRef50_Q84GX2 Orf41 n=3 Tax=Photorhabdus RepID=Q84GX2_PHOLU 71 9e-11 UniRef50_B3EME9 Capsular exopolysaccharide family n=3 Tax=Chloro... 70 1e-10 UniRef50_A3WGE3 WcbD n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WGE3... 70 1e-10 UniRef50_Q3IV72 Predicted acetyltransferase n=4 Tax=Rhodobacter ... 70 1e-10 UniRef50_B8F354 Tyrosine kinase, chain length regulator in capsu... 69 3e-10 UniRef50_A3VRW3 Polysaccharide chain length determinant protein ... 69 4e-10 UniRef50_Q7U940 Putative uncharacterized protein n=1 Tax=Synecho... 69 4e-10 UniRef50_Q0AAI3 Putative uncharacterized protein n=1 Tax=Alkalil... 68 7e-10 UniRef50_D2PZ20 Lipopolysaccharide biosynthesis protein n=1 Tax=... 67 1e-09 UniRef50_D1BLU6 Lipopolysaccharide biosynthesis protein n=3 Tax=... 66 2e-09 Sequences not found previously or not previously below threshold: UniRef50_D0MGZ9 Lipopolysaccharide biosynthesis protein n=1 Tax=... 94 9e-18 UniRef50_D1PXM6 Chain length determinant protein n=1 Tax=Prevote... 92 2e-17 UniRef50_Q0YTR7 Lipopolysaccharide biosynthesis n=1 Tax=Chlorobi... 91 5e-17 UniRef50_D1W2E8 Chain length determinant protein n=1 Tax=Prevote... 89 3e-16 UniRef50_A0LGD5 Lipopolysaccharide biosynthesis n=1 Tax=Syntroph... 88 5e-16 UniRef50_D1QTS5 Chain length determinant protein n=1 Tax=Prevote... 87 7e-16 UniRef50_B3C5B9 Putative uncharacterized protein n=1 Tax=Bactero... 86 2e-15 UniRef50_C0QSZ0 Chain length determinant protein n=1 Tax=Perseph... 85 4e-15 UniRef50_C6ITG8 Lipopolysaccharide biosynthesis protein n=26 Tax... 84 7e-15 UniRef50_B1I5B3 Lipopolysaccharide biosynthesis n=1 Tax=Candidat... 81 5e-14 UniRef50_B2I037 ATPase n=12 Tax=Acinetobacter RepID=B2I037_ACIBC 79 2e-13 UniRef50_O52788 Tyrosine-protein kinase ptk n=4 Tax=Acinetobacte... 78 5e-13 UniRef50_C9RRK0 Capsular exopolysaccharide family n=1 Tax=Fibrob... 77 7e-13 UniRef50_Q1Q1R5 Similar to Succinoglycan biosynthesis transport ... 77 1e-12 UniRef50_A9W817 Lipopolysaccharide biosynthesis protein n=1 Tax=... 77 1e-12 UniRef50_A0LKB3 Lipopolysaccharide biosynthesis n=1 Tax=Syntroph... 77 1e-12 UniRef50_B5ZNF2 Lipopolysaccharide biosynthesis protein n=8 Tax=... 76 2e-12 UniRef50_A9EY54 Succinoglycan biosynthesis transport protein exo... 76 2e-12 UniRef50_Q0AE90 Lipopolysaccharide biosynthesis n=2 Tax=Nitrosom... 75 3e-12 UniRef50_Q13QA8 Protein-tyrosine kinase n=3 Tax=Burkholderia Rep... 75 4e-12 UniRef50_B8D0N1 Lipopolysaccharide biosynthesis protein n=1 Tax=... 75 4e-12 UniRef50_B6AWP6 Lipopolysaccharide biosynthesis n=1 Tax=Rhodobac... 75 4e-12 UniRef50_B2JKP4 Exopolysaccharide transport protein family n=1 T... 75 4e-12 UniRef50_B2TDM9 Exopolysaccharide transport protein family n=1 T... 75 5e-12 UniRef50_B3QV13 Lipopolysaccharide biosynthesis protein n=1 Tax=... 74 7e-12 UniRef50_Q92VQ0 Putative tyrosine-protein kinase n=1 Tax=Sinorhi... 74 8e-12 UniRef50_A6UI93 Lipopolysaccharide biosynthesis protein n=2 Tax=... 74 9e-12 UniRef50_A3W0H6 Chain length determinant protein, putative n=2 T... 74 1e-11 UniRef50_Q3K9H3 Tyrosine-protein kinase n=4 Tax=Pseudomonadaceae... 74 1e-11 UniRef50_A4BR88 Putative uncharacterized protein n=1 Tax=Nitroco... 73 2e-11 UniRef50_B2AHI0 Tyrosine-protein kinase n=5 Tax=Cupriavidus RepI... 72 3e-11 UniRef50_UPI000182721C cryptic autophosphorylating protein tyros... 72 3e-11 UniRef50_A3X197 Exopolysaccharide transport protein, putative n=... 72 3e-11 UniRef50_A3I1X6 Putative uncharacterized protein n=1 Tax=Algorip... 72 4e-11 UniRef50_Q0C2Y1 Chain length determinant family protein n=1 Tax=... 72 4e-11 UniRef50_Q48452 Putative tyrosine-protein kinase in cps region n... 72 5e-11 UniRef50_C4ZJE1 Capsular exopolysaccharide family n=1 Tax=Thauer... 71 6e-11 UniRef50_UPI00016A48EE exopolysaccharide transport protein famil... 71 6e-11 UniRef50_B5WI70 Capsular exopolysaccharide family n=1 Tax=Burkho... 71 7e-11 UniRef50_A3W156 Putative succinoglycan biosynthesis transport pr... 70 1e-10 UniRef50_A0NRN0 Lipopolysaccharide biosynthesis n=1 Tax=Labrenzi... 69 2e-10 UniRef50_Q1ITG0 Protein-tyrosine kinase n=1 Tax=Candidatus Korib... 69 2e-10 UniRef50_Q15NN8 Protein-tyrosine kinase n=1 Tax=Pseudoalteromona... 69 2e-10 UniRef50_A4JQJ9 Lipopolysaccharide biosynthesis n=1 Tax=Burkhold... 69 3e-10 UniRef50_B0UKX0 Lipopolysaccharide biosynthesis protein n=1 Tax=... 69 3e-10 UniRef50_B1FTG2 Exopolysaccharide transport protein family n=4 T... 69 3e-10 UniRef50_UPI000197B94A hypothetical protein BACCOPRO_01725 n=1 T... 69 4e-10 UniRef50_D2LDJ6 Lipopolysaccharide biosynthesis protein n=1 Tax=... 68 5e-10 UniRef50_UPI0001C16095 Lipopolysaccharide biosynthesis n=2 Tax=N... 67 8e-10 UniRef50_Q13ZQ0 Protein-tyrosine kinase n=1 Tax=Burkholderia xen... 67 8e-10 UniRef50_B5WFM2 Exopolysaccharide transport protein family n=1 T... 67 1e-09 UniRef50_B3QVI2 Capsular exopolysaccharide family n=1 Tax=Chloro... 67 1e-09 UniRef50_Q2SGP9 Uncharacterized protein involved in exopolysacch... 67 1e-09 UniRef50_Q5NY54 Exopolysaccharide biosynthesis protein n=3 Tax=P... 67 1e-09 UniRef50_A8F8H6 Lipopolysaccharide biosynthesis protein n=1 Tax=... 67 1e-09 UniRef50_A9ANS7 Capsular exopolysaccharide family n=45 Tax=Burkh... 67 1e-09 UniRef50_Q0FSG4 Exopolysaccharide polymerization/transport prote... 67 2e-09 UniRef50_Q3A4J7 Uncharacterized exopolysaccharide biosynthesis p... 66 2e-09 UniRef50_C8S386 Capsular exopolysaccharide family n=1 Tax=Rhodob... 66 2e-09 UniRef50_C5CVD8 Exopolysaccharide transport protein family n=2 T... 66 2e-09 UniRef50_B2T0D7 Exopolysaccharide transport protein family n=6 T... 66 2e-09 UniRef50_B0JLU2 Protein-tyrosine kinase n=2 Tax=Microcystis aeru... 66 2e-09 UniRef50_D1UIR6 Capsular exopolysaccharide family n=1 Tax=Burkho... 66 2e-09 UniRef50_Q319N0 Uncharacterized protein involved in exopolysacch... 66 3e-09 UniRef50_Q2G3B4 Protein-tyrosine kinase n=1 Tax=Novosphingobium ... 65 3e-09 UniRef50_C5CQW3 Exopolysaccharide transport protein family n=1 T... 65 3e-09 >UniRef50_P26266 Ferric enterobactin transport protein fepE n=158 Tax=cellular organisms RepID=FEPE_ECOLI Length = 377 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 377/377 (100%), Positives = 377/377 (100%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI Sbjct: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY Sbjct: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 Query: 121 LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT 180 LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT Sbjct: 121 LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT 180 Query: 181 SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL Sbjct: 181 SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 Query: 241 NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN 300 NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN Sbjct: 241 NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN 300 Query: 301 RQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR 360 RQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR Sbjct: 301 RQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR 360 Query: 361 YAMASRKQDAMMADHLV 377 YAMASRKQDAMMADHLV Sbjct: 361 YAMASRKQDAMMADHLV 377 >UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10 Tax=Yersinia RepID=C4UHK4_YERRU Length = 384 Score = 273 bits (697), Expect = 7e-72, Method: Composition-based stats. Identities = 120/374 (32%), Positives = 213/374 (56%), Gaps = 3/374 (0%) Query: 1 MSSLNIKQGSDAHFPD---YPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLI 57 MS+ G + P+ + S S +EID+ L ++++R+K ++ V F +GL++ Sbjct: 1 MSNEIRHNGPASPKPNNYGFSDMSSSKDEIDIFELFTIIFRSKLKIILVTLIFLISGLVV 60 Query: 58 SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLL 117 S+ILPQKWTS +++ P Q Q L+K L VLD+++ I + F + F S L Sbjct: 61 SYILPQKWTSTSIIVPAGEEQLQVLDKITINLAVLDINLGITSNYLLSTFKQNFDSQDLR 120 Query: 118 EEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFT 177 E+YL ++ Y +K++ D ++ I + + K + Y + LS++ Sbjct: 121 EQYLINTDYFKQMMKDSPEDAIERRAVIENIVNNSIGSINPIKDKSGNDNEYRYYKLSYS 180 Query: 178 APTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANI 237 A T+ +A+ +L GYI+++++ V + ++ +++ +K + D ++ KN + I Sbjct: 181 ASTAVDARDLLQGYINFVNSTVNADVNLKIQRAVDLAKGMATDKYSLDLLRAKNSHEVKI 240 Query: 238 QRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGE 297 +RL Y+ IA+ AGIKKPVYS+G + DDPDF I++GAD + RKLEIEK++TD+ +N + Sbjct: 241 ERLKYASSIADVAGIKKPVYSSGSQISDDPDFPITMGADALNRKLEIEKSITDLTTVNAD 300 Query: 298 LRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGV 357 L NR+ +++L + V+ PFKY P+ P K+D P + +I++L AL G + + G V Sbjct: 301 LLNRKLYLDKLNALEIPKVDVVPFKYLQQPTEPTKRDAPKRGLIMVLFALAGLVGSVGFV 360 Query: 358 LLRYAMASRKQDAM 371 L+ + ++ R++ Sbjct: 361 LVGHFVSERERQEE 374 >UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yersinia RepID=A4TP85_YERPP Length = 383 Score = 272 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 132/375 (35%), Positives = 219/375 (58%), Gaps = 3/375 (0%) Query: 1 MSSLNIKQGSDAHFPD---YPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLI 57 MS+ + D+ P+ + S S NEIDL + SV++++K ++ + F +GL++ Sbjct: 1 MSNKQARSNLDSPIPNNYDFSNVSSSRNEIDLFEIFSVVFKSKFKIILITLFFLISGLVV 60 Query: 58 SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLL 117 S+ILPQKWTS A++ P Q Q L++ T L VLD+ + + + F + F S L Sbjct: 61 SYILPQKWTSTAIIALPGDEQVQVLDELITNLTVLDIKVDVSANYLLSTFKQNFDSQDLR 120 Query: 118 EEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFT 177 E+YL ++ Y +K D LD I + + + + K + + Y + LS++ Sbjct: 121 EQYLVNTNYFKRLMKNNPEDGLDKRALIERIVNENISSVNPLKDKTEGENEYRYYKLSYS 180 Query: 178 APTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANI 237 A T +A+ +L G I+Y++T+V + ++ +++ +K + + +K +N I Sbjct: 181 ASTPTDARDLLQGSINYVNTIVNADVFRKIQRAVDLAKGIGTDKYSMELLKARNNQKVKI 240 Query: 238 QRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGE 297 +RL Y+ IA+AAG+KKPVYSNG A+ DDPDF I++G+D + RKLEIEK+V D+A +N E Sbjct: 241 ERLRYASSIADAAGVKKPVYSNGSAISDDPDFPITMGSDALNRKLEIEKSVIDLASINTE 300 Query: 298 LRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGV 357 L NR+ +++L + + +VN PFKY P+ P K+D P +A+IVIL AL+G M + G V Sbjct: 301 LLNRKLYLDKLNRLEIPNVNIVPFKYLQQPTEPTKRDVPKRALIVILFALVGLMGSVGFV 360 Query: 358 LLRYAMASRKQDAMM 372 L+ + + RK++ Sbjct: 361 LVEHFVRERKREEEG 375 >UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enterobacteriaceae RepID=B4F1Q0_PROMH Length = 372 Score = 259 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 138/373 (36%), Positives = 213/373 (57%), Gaps = 4/373 (1%) Query: 1 MSSLNIKQGSDAHFPDYPLAS--PSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLIS 58 M+S K S + N+EIDL L SVL+++K ++ + FA G ++ Sbjct: 1 MNSKLSKPQSSEVDKGHFDDFYLKQNDEIDLFELFSVLYKSKFVIIGITLLFAIVGFTVA 60 Query: 59 FILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLE 118 LPQKWTS A +T P + ++L + L ++D+D ++ + + FI + S L E Sbjct: 61 SFLPQKWTSQAAITKPMLDEMKQLRATLNDLSLVDVDTGVNASSVYQKFINNYNSRVLRE 120 Query: 119 EYLRSSPYVMDQLKEAKI-DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFT 177 EYL ++ Y + L + LD + I + K + + SK DE LSFT Sbjct: 121 EYLVNTDYYKNLLAKMDDPTPLDKRKLIETIVTKDINLKASDSKNSDE-EFSGEINLSFT 179 Query: 178 APTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANI 237 APTSEEA +LSGYI +IST V E + + +++E K ++ D + N + N+ Sbjct: 180 APTSEEAYDLLSGYIRFISTKVRVEVKDEIDDQIERKLNHAQKAYQMDLERIANARNVNV 239 Query: 238 QRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGE 297 QRL Y+L+IANAAG+KKP+ S G +KDDPD+SI++GAD + KL I +A+TD ++ E Sbjct: 240 QRLKYALEIANAAGVKKPISSEGAQIKDDPDYSIAMGADALSSKLAITEAITDPTTVSSE 299 Query: 298 LRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGV 357 L+NR Y ++QL + + D+ F PFKY L P P KKD P +A+I++ +A +G +++ GV Sbjct: 300 LKNRLYNIQQLEQIKLGDLQFVPFKYMLKPYEPTKKDAPKRALILVGAAFVGFILSVMGV 359 Query: 358 LLRYAMASRKQDA 370 LL Y +R++ A Sbjct: 360 LLGYMARNRRKTA 372 >UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 Tax=Cronobacter RepID=C9XZM2_CROTZ Length = 377 Score = 256 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 183/377 (48%), Positives = 264/377 (70%), Gaps = 1/377 (0%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 MSS++IK A PDYPL E+DL L++VL++A+K ++++ F GL ++F+ Sbjct: 1 MSSIDIKNNPLASAPDYPLLDHPRAELDLFALVAVLFKARKMILSITALFIVMGLALAFL 60 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 LPQKWTS AVV+ PE Q EL++ L+VLD+D ID N+F+KKF S +L E++ Sbjct: 61 LPQKWTSEAVVSIPETRQLIELQRVLVDLQVLDVDAAIDAASLENMFLKKFDSRALQEKF 120 Query: 121 LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT 180 LR+SP+V Q+KEA+ D L RA+ +++++K + N + K S Y+SWTLSFTAP Sbjct: 121 LRTSPWVQAQVKEAQSDTESLERAVTLVAQRIK-MTSNDNPKAPTASPYSSWTLSFTAPK 179 Query: 181 SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 +++AQ VL YI+Y + V ++ LEN+R +E+K + E+ +L DR N+ IQRL Sbjct: 180 AQDAQRVLKEYINYAALAVQRQVLENLRTTIELKVKSEESRLMIDRNTLANEHKIAIQRL 239 Query: 241 NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN 300 NYSL +ANAAGIKKPVYSNGQAVKDDPD+SI+LGADG+ +KL IE+++TDV LN ++N Sbjct: 240 NYSLQVANAAGIKKPVYSNGQAVKDDPDYSIALGADGLAQKLAIERSITDVTALNAAIQN 299 Query: 301 RQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR 360 R+Y + +L K ++ DV+F PF YQ++PSLPVK DGPGKA+++IL+ L+G ++AC VL+R Sbjct: 300 REYRLAELKKLNLADVDFQPFHYQMAPSLPVKSDGPGKALVLILATLMGFIIACALVLVR 359 Query: 361 YAMASRKQDAMMADHLV 377 +A R+ AD L+ Sbjct: 360 DVIAQRQVHPAGADTLL 376 >UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4SZ47_YERIN Length = 372 Score = 251 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 117/372 (31%), Positives = 204/372 (54%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 M ++ + ++EIDL+ + S+L+RAKK ++ +V FA GL++ F Sbjct: 1 MKVRSLDTEKHKQPAVIESSFVKHDEIDLIEIFSMLFRAKKIIILIVVVFALIGLIVGFF 60 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 LPQKWTS++V+ P + L+ +L+V +D ID +++ S L + + Sbjct: 61 LPQKWTSSSVIIAPTYSESMLLDNLLGELKVAGVDSGIDENYLLATYMQFCDSRILRDAF 120 Query: 121 LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT 180 L+ + Y+ +K+ DE + +S + NA+ K + L F+A T Sbjct: 121 LQQTDYLKMLMKKNPNDEFKKQSLLDVISTNNITTESNANDKSASTKDNNYFRLKFSAQT 180 Query: 181 SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 + A+ +L GY++Y+ L ++ L +K + E+ + + + +++ D I+RL Sbjct: 181 PDSAKDLLQGYMNYVKESANAYILFKLQRSLALKLEAEQRLFSLESQRVQSRRDVRIKRL 240 Query: 241 NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN 300 Y+L IA AAG+KKPVYS+G A+ DDPD+SI+LG D +++KL +EK++TD + +LRN Sbjct: 241 EYALSIAEAAGLKKPVYSSGAAILDDPDYSITLGGDALKQKLRVEKSITDPLTTSADLRN 300 Query: 301 RQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR 360 R ++ L ++++ FTPFKY P +P KKDGP + +I+++ IG +VA LLR Sbjct: 301 RAINIDLLRNIKIDNIEFTPFKYLQKPEVPTKKDGPKRLLILVIFTFIGLIVAIATALLR 360 Query: 361 YAMASRKQDAMM 372 + ++ A + Sbjct: 361 DGLVRHREIASL 372 >UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=Enterobacteriaceae RepID=Q7N0P7_PHOLL Length = 367 Score = 245 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 128/370 (34%), Positives = 221/370 (59%), Gaps = 3/370 (0%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 MS+ IK + + S ++EIDL L SVL+++K ++ V FA G + + + Sbjct: 1 MSNKPIKGTNFSEEYFNYYNSKQDDEIDLFELFSVLFQSKLLIITVTILFAVIGFVAASL 60 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 +PQKW+S+A + P+ + Q L+ TKL VL+L + + +N F+ F S L EEY Sbjct: 61 MPQKWSSSASIVKPQLEEIQPLKDILTKLEVLNLQPSVTSSSLYNNFLNNFNSRVLREEY 120 Query: 121 LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT 180 L ++ Y + + E+ + R ++ EK+ + ++S K ++ L+F+A T Sbjct: 121 LVNTEYFKNLVAESGDHSPLVKRKLI---EKIVNDNISSSSKAEKDDENGETKLTFSAGT 177 Query: 181 SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 +E+A +L+GYIDY+S++V ++ + + ++ K + + + D + N +AN++RL Sbjct: 178 AEDAYNLLNGYIDYVSSVVHEQVKSELSDMVKQKLNYSEGLYSVDLNRVNNIQEANVERL 237 Query: 241 NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN 300 ++L IAN+AGIKKP+ S G +KDDPD+SI+LGAD ++RKL+I + + D ++ +LRN Sbjct: 238 KHALSIANSAGIKKPISSEGAMIKDDPDYSIALGADALQRKLQITEEIKDPTLIDADLRN 297 Query: 301 RQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR 360 R + +++L V+ VNF PF+Y +P P KD P + +I+I SA +G ++A VL+R Sbjct: 298 RLFYIKELKALKVDKVNFQPFRYMQAPYEPTAKDSPKRLLILIGSAFLGLILAVVSVLIR 357 Query: 361 YAMASRKQDA 370 + + SR+Q A Sbjct: 358 HMVRSRQQAA 367 >UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 Tax=Edwardsiella RepID=C5BCN1_EDWI9 Length = 357 Score = 231 bits (588), Expect = 3e-59, Method: Composition-based stats. Identities = 125/355 (35%), Positives = 207/355 (58%), Gaps = 1/355 (0%) Query: 16 DYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPE 75 + + +EIDLL+L+ VL++AK ++ V A AG + +LPQKWTS A + P + Sbjct: 4 QHVVPPLQQDEIDLLSLLLVLFKAKWVILGAVLVCALAGFAVKTLLPQKWTSYAELIPAQ 63 Query: 76 PVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAK 135 + + +L +LD+ + F++ ++S + EY+ + Y L A Sbjct: 64 ARELAAMNSELNQLALLDIKVNASPGWLIERFVQTYESQIVRREYIAQTDYYK-TLAAAL 122 Query: 136 IDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 195 D L R + +L++K + ++ + E YT + L +A +S+EA +L GYID++ Sbjct: 123 SDPLARERLLSSLAQKAFTLKNSQLDQATESKEYTYYRLGVSARSSQEAHALLQGYIDFV 182 Query: 196 STLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKP 255 + VV + N++N+L+ EK + +N I+RL+YSL +A AAGI KP Sbjct: 183 AARVVDDLRYNIKNQLDQTLAREKARYQLTLQNLRNDQQVKIRRLDYSLAVAQAAGISKP 242 Query: 256 VYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVND 315 +Y NG KDD DF ISLG +G+ +KL+IEK+ TD+ ELN L+N Q + +L++ H++D Sbjct: 243 LYGNGATFKDDDDFPISLGTNGLRQKLDIEKSQTDLTELNAGLKNSQQYIGRLSQVHLSD 302 Query: 316 VNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDA 370 + PFKY + PS+PV+K+ P A+IV+LSA+ G +++CG VL+R+A+ ++ A Sbjct: 303 LKIQPFKYLMLPSIPVQKEAPKGALIVLLSAMAGLLLSCGAVLMRHAITGQRTAA 357 >UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q4F4_PROST Length = 372 Score = 228 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 113/354 (31%), Positives = 201/354 (56%), Gaps = 5/354 (1%) Query: 18 PLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPV 77 P S ++EIDL+ L +VL R K ++ + + + F LPQKW+S AVV PP Sbjct: 20 PFNSQQSDEIDLMALFAVLLRNKLLIIVITVVITLISIFVVFQLPQKWSSTAVVIPPSSE 79 Query: 78 QWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLK--EAK 135 + +++ +L VLD+ I + + FN FI +++S E Y+RS+ Y + + Sbjct: 80 EIKDINTLSAQLSVLDVKIDLSAQQIFNAFIDQYRSKVNQEAYVRSTNYFKKLSEQVNST 139 Query: 136 IDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 195 E + R + + + D + +K S + L+F APT EAQ +LSGY+ Y Sbjct: 140 DKENEQQRLVNTIISNNIGLKDQSKEK---NSTSSDIILTFVAPTPSEAQDLLSGYVRYT 196 Query: 196 STLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKP 255 +T V ++ ++++N + + + E Q+ K +++ D ++RL ++DIA AAG++KP Sbjct: 197 ATKVREQFKKDIQNAIAQQLVYANETFKQEVTKIRSEYDVKVERLKRAIDIAKAAGVRKP 256 Query: 256 VYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVND 315 + S+ + DDPD+ I+LG + +E+KL IE D+A LN +L+ RQ+ ++ L++ ++ Sbjct: 257 IVSDSAIISDDPDYPIALGTEALEKKLAIELQNRDIALLNEDLQIRQHYIKNLSELDIDT 316 Query: 316 VNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQD 369 ++F P K+ L+P LP +KD P +I++LSA++G +++C VL R ++ Sbjct: 317 LDFIPAKFMLAPDLPTQKDSPKSVLIIMLSAILGFILSCAYVLSRELYRDYHKN 370 >UniRef50_UPI000197BC0B ferric enterobactin transport protein FepE n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197BC0B Length = 379 Score = 227 bits (579), Expect = 4e-58, Method: Composition-based stats. Identities = 116/372 (31%), Positives = 198/372 (53%), Gaps = 8/372 (2%) Query: 1 MSSLNIKQGSD---AHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLI 57 MS+ + + N+EIDL+ L S+L + K ++ + + Sbjct: 7 MSNKQQPPQGNIEQKSPSAHQFQIQQNDEIDLMALFSILLKHKFLILIFTVVCIVVSVGV 66 Query: 58 SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLL 117 +LPQKW+S A+V PP + +E+ +L VLD+ I + FN F+ +++S Sbjct: 67 VKLLPQKWSSTAIVIPPASEELKEVNAFKAQLDVLDIPIDLSAQRIFNSFVDQYRSKVNQ 126 Query: 118 EEYLRSSPYVMDQLK--EAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 175 E Y+RS+ Y + + + K D + R + ++ + D + +K S LS Sbjct: 127 ESYIRSTDYYHNLAEKIDPKDDVIAQQRLVNSIISNDIKIQDLSKEK---NSTSNDIVLS 183 Query: 176 FTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDA 235 FTAP EAQ +L GYI Y ++ V ++ + N + K + E L ++ K + + D Sbjct: 184 FTAPLPTEAQDLLEGYIRYSASKVRQQLKVEIDNMISEKLIYASESLKREVSKIQTEYDV 243 Query: 236 NIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELN 295 ++RL ++DIA AAGI+KP+ S+ A+ DDPD+ I+LG + +E+KL IE D+A ++ Sbjct: 244 KVERLKRAVDIAKAAGIEKPIASDSVAINDDPDYPIALGTEALEKKLLIETQNRDLALMS 303 Query: 296 GELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACG 355 L+NR+ ++ L + +++FTP K+ L+P LP+ KD P ++IV LSA++G +++C Sbjct: 304 ENLQNRKIYLDNLQEVTAKELDFTPVKFILTPDLPLHKDSPKSSLIVALSAILGLILSCA 363 Query: 356 GVLLRYAMASRK 367 VL R K Sbjct: 364 FVLSRELYRDYK 375 >UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Providencia RepID=D1P4F6_9ENTR Length = 375 Score = 219 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 112/362 (30%), Positives = 191/362 (52%), Gaps = 7/362 (1%) Query: 8 QGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTS 67 + PD+ L N+EIDL+ L++VL++ K ++ + + LPQKWTS Sbjct: 12 KNQLEQNPDFQLQ--KNDEIDLMALVAVLFKNKYLIIIFTVVITALSIGVVKTLPQKWTS 69 Query: 68 AAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYV 127 A++ P + +E+ + +L LD +I + +N FI +++S E+Y+RS+ Y Sbjct: 70 EAIIIQPTSEETKEISEFAARLSALDFNIDLGSARIYNEFITQYRSKVNQEDYVRSTEYY 129 Query: 128 MDQLKEAKI--DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQ 185 L + D + R + + + NA +K + S LSFTAPT+ EAQ Sbjct: 130 QSLLAKLGDKNDVQEEQRLVNRIISDSIKLKYNAKEKDSDDSD---IILSFTAPTAIEAQ 186 Query: 186 TVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLD 245 +L+GYI Y ++ V K + N + + + E L D K + D I+RL ++ Sbjct: 187 DLLNGYIRYTASQVRKRFKTEIDNAISRQLIYSVEALKNDTAKIQIAYDVKIERLKRAIT 246 Query: 246 IANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLV 305 IA AAGI +P+ + A+ DDPD+ I+LG++ +E KL IE D+A ++ +L+N + + Sbjct: 247 IAKAAGITRPIARDAVAINDDPDYPIALGSEALEEKLAIELKNRDLALISEKLQNSKMHI 306 Query: 306 EQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 + L +++F P ++ L+P LP+ KD P A+IV L A++G +++C VL R + Sbjct: 307 DNLNGLTTKELDFQPVRFILTPDLPIAKDSPKSALIVALGAILGLILSCAFVLGRDLYRN 366 Query: 366 RK 367 Sbjct: 367 YN 368 >UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65UU8_MANSM Length = 396 Score = 213 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 83/379 (21%), Positives = 158/379 (41%), Gaps = 25/379 (6%) Query: 10 SDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAA 69 S + +N+EIDL++LI VLW+ K V+ F FA + +F ++WTS A Sbjct: 21 SLMNNTASMSPQNNNDEIDLIDLIKVLWQKKLVVILTSFFFALIAAIYAFTAKEQWTSKA 80 Query: 70 VVTPPEPVQWQELEKSFTKLRVL----DLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSP 125 P+ ++ + + K FN F S ++ E+ S Sbjct: 81 TTIAPKVADMGYYLSLRSEYANILNIKEFTSKDVVDNLFNNFRVALFSNNMKREFFAQSK 140 Query: 126 YVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQ 185 + + E DE + + + +K V KK +SF A T +EAQ Sbjct: 141 WFQNYANENAKDEDAKQKLLSDILDKSLIVTIPDIKKNPNA---LGINISFAAETPKEAQ 197 Query: 186 TVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLD 245 VL+ YI++I+ V+ E + ++I + + + + T++ ++ L +LD Sbjct: 198 EVLTEYINFINATVLTEDKIDFLADIKIAIDNLELQKDKIQRDTESVRQVQLENLTTALD 257 Query: 246 IANAAGIKKPVYSNGQ-----------------AVKDDPDFSISLGADGIERKLEIEKAV 288 IA +AGIK+ ++G + D + LG ++ +++ Sbjct: 258 IAKSAGIKEYSKTSGNVSIPQFALGDAQIPFTDSKLSDGSYLFMLGEKYLQAQVDTLTNN 317 Query: 289 TDVAELNGELRNRQ-YLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSAL 347 V ++ +Q L+ L + D T + Y SP P +D P + +++++ A+ Sbjct: 318 KVVYPVSFYTIEKQVSLLNSLEQKANTDSKVTSYYYLTSPDYPTTRDWPKRVLLLLIGAV 377 Query: 348 IGGMVACGGVLLRYAMASR 366 +GG++ C VL + + + Sbjct: 378 LGGVLGCLWVLGKQIFSQK 396 >UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L7N8_TOLAT Length = 372 Score = 211 bits (536), Expect = 3e-53, Method: Composition-based stats. Identities = 80/374 (21%), Positives = 154/374 (41%), Gaps = 21/374 (5%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 M++ Q ++ +P YP+ N+EIDL+ L LW+ K + V A + +F Sbjct: 1 MNNKEFPQQANMPYP-YPMPYQDNDEIDLVELFRTLWKQKAKIALVTAATTLVAGIYAFT 59 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKL---------RVLDLDIKIDRTEAFNLFIKKF 111 + WTS AV P+ + + +L + L E F F K+ Sbjct: 60 AEEVWTSKAVFDAPKLEEIGSYYEFTQQLRRTLQKPTIGAITLIPDQITKEVFTEFQKQT 119 Query: 112 QSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS 171 S+ L E+ S Y + + K E D + + L EK V +K PS Sbjct: 120 NSIDLRREFWSQSDYYHNLVINIK-SEKDKEKKLDDLIEKNITVVPIDEQKVKFPS---- 174 Query: 172 WTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKN 231 +S + + A+ +L Y+D ++ V K ++ L+ + + + + + Sbjct: 175 --VSLSVNDATTAKELLIQYVDKLNAKVWKSKSTELKTILKEEVAELENEKKLLEFRAET 232 Query: 232 QLDANIQRLNYSLDIANAAGIKKPVYS--NGQAVKDDPDFSISLGADGIERKLEIEKAVT 289 + +I + + +A A IK+ S G A D LG ++ +++ Sbjct: 233 DRNNSIDIIRKAKSVAEKANIKELNLSAMQGNANVSSRDMLFFLGTKALDAQIDNLVNKP 292 Query: 290 DVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIG 349 + R ++ +L K V+ ++Y +PS P+ +DGP + +I+++S L G Sbjct: 293 VTMPVRYYEVER--MLTELKKLPEFKVDIKSYRYLQAPSEPLTRDGPKRTLIIVVSFLFG 350 Query: 350 GMVACGGVLLRYAM 363 +++C +L++ Sbjct: 351 MILSCIAILIKKVF 364 >UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C7A7_9GAMM Length = 351 Score = 208 bits (528), Expect = 3e-52, Method: Composition-based stats. Identities = 83/355 (23%), Positives = 155/355 (43%), Gaps = 15/355 (4%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ 78 + + SN+EIDL L+ LW+ K T+ F ++ + Q WTS A VT + Sbjct: 7 VNNSSNDEIDLAELVKTLWQGKVTIALCSIVFTVCAIVYALTAQQWWTSDATVTRGQYKD 66 Query: 79 WQELEKSFTKLRVL----DLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEA 134 + T L + ++ + N FI +F + + +L + + K+ Sbjct: 67 TANIRSQVTNLYSVIDVSKVNNIFESGRLLNEFITEFNAFDNKKAFLEQNSIIEQYAKDD 126 Query: 135 KIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDY 194 +++ D + I ++K+ + DE + LSF A +SE A +L Y + Sbjct: 127 GVNKEDKGKFIAFWAKKI------DASLNDEKKRPNVYKLSFEARSSEAAHDLLKAYSSF 180 Query: 195 ISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKK 254 I+ V E+ + +K+ Q +K K + A + + NY+LDIA +A + K Sbjct: 181 ITDQVRDEAFSVIASKIAHNKQILLASKESLELKAKEKQKALLLKTNYALDIARSAKVNK 240 Query: 255 PVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVN 314 P+ V F I LG +G++ + I K++ D++ L + + L+K +++ Sbjct: 241 PLA----DVNLTGVFPIQLGTEGLKEQSNILKSMKDLSFFEPSLTQIKIKLGLLSKIYLD 296 Query: 315 DVNF-TPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQ 368 +Y P+ +D P +++I +L L+G M+ VLL+ A + Sbjct: 297 KDTAMKSVRYLKDIDYPISRDKPKRSLIAVLGFLLGMMLGVAIVLLKSAFNKNAK 351 >UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0GV84_VIBMI Length = 379 Score = 204 bits (517), Expect = 5e-51, Method: Composition-based stats. Identities = 85/378 (22%), Positives = 164/378 (43%), Gaps = 30/378 (7%) Query: 7 KQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWT 66 + H YP +N IDL L S LW+ K T++ +F F A + S + W+ Sbjct: 5 PNNAPIHPNQYPSYYSGDNGIDLRELFSALWKGKWTIITSMFIFTFAAITYSLTAQEWWS 64 Query: 67 SAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDRTEAFNLFIKKFQ 112 S A VT P +K + + L LD ID F F+++F Sbjct: 65 SKATVTQPLLQDIAGYQKVVQRSQPLFDLHQQDGTIIVSEALDSLIDPEVIFKRFLQEFN 124 Query: 113 SVSLLEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYT 170 + +++++ + KE + + L E++K V Sbjct: 125 ANGTKRRFMQTNATFLALKKELLNQDNPESLQDFYEQWFERIKGVPV-------GKKEEN 177 Query: 171 SWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTK 230 +TLSF + + + T+LS Y+ +++ + ++ ++ N L K +++ R + + Sbjct: 178 IFTLSFQSVDKDSSLTLLSQYVQFVNQTINQQLNNDLFNTLVAKYGEIEQQENYLRQQAQ 237 Query: 231 NQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTD 290 +L ++R Y+L IA AA I +P+ Q + + F+I++G+ ++ K++ K++ + Sbjct: 238 LRLQVELERTQYALAIAEAAAITQPL----QNLGEQEIFAINIGSRALKAKVDALKSIKN 293 Query: 291 VAELNGELRNRQYLVEQ--LTKAHVN-DVNFTPFKYQLSPSLPVKKDGPGKAIIVILSAL 347 ++ + +L Q + Q L + + + F Y P + +D P +A+I +L L Sbjct: 294 LSVFDPQLAILQSKLSQFDLNELSTDIKWSINGFYYLDQPEQALTQDNPKRALITVLGFL 353 Query: 348 IGGMVACGGVLLRYAMAS 365 GGM+ VL R+ Sbjct: 354 FGGMIGVVIVLGRFIFRK 371 >UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio splendidus LGP32 RepID=B7VHQ6_VIBSL Length = 374 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 85/378 (22%), Positives = 160/378 (42%), Gaps = 24/378 (6%) Query: 6 IKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKW 65 ++ P P N+EIDL LW K ++ V F + + + + + W Sbjct: 3 QPTQPQSYTPQNPPMYIPNDEIDLREFFKALWDGKLIIILVTALFTSSAIGFALLAQEWW 62 Query: 66 TSAAVVTPPEPVQ--------------WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKF 111 +S A +T E + + + +LD +D F F+ F Sbjct: 63 SSEAEITNNELQDRVMYEQQVKKFQPVFSIYQSDGSARSSEELDFLVDSQIIFQRFVDLF 122 Query: 112 QSVSLLEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLY 169 S + + +L S + + + E+ +E + + + KKD S Sbjct: 123 NSSNNKKAFLDESSEFQEIKDDSFSSASEVTEDTTRKLYTEWFERISASLRDKKDTSS-- 180 Query: 170 TSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKT 229 + L+F A T E + +LS YI + V ++ +++ + + ++ K Sbjct: 181 -PYILTFQATTKESSFDLLSSYISFTELQVRNDAFDHLEALVFGERNELFQQKMVLESKA 239 Query: 230 KNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVT 289 +N+L I+R +L IA AAG++ P+ S ++I LG+ ++ K++I K+V Sbjct: 240 RNRLLVEIERAQSALKIAKAAGVETPLLSGNARDF----YAIELGSKALQEKIKILKSVK 295 Query: 290 DVAELNGELRNRQYLVEQLTKAHVN-DVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALI 348 ++A L L+ ++ L ++ V+F F+Y P +D P +A+IV+L L+ Sbjct: 296 NLAVLEPRLQQITAQLDMLDSIKIDRTVDFHAFRYLSDVEQPTTRDKPKRALIVVLGTLL 355 Query: 349 GGMVACGGVLLRYAMASR 366 GGM+ VL+R+A Sbjct: 356 GGMLGVAIVLIRFAFRKE 373 >UniRef50_A5KZS4 Regulator of length of O-antigen component of lipopolysaccharide chains n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5KZS4_9GAMM Length = 358 Score = 199 bits (505), Expect = 1e-49, Method: Composition-based stats. Identities = 77/362 (21%), Positives = 155/362 (42%), Gaps = 20/362 (5%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQW 79 +N+EIDL L LW K ++ + F + + + + + W+S+A +T +P Sbjct: 1 MYSANDEIDLRELFKALWDGKLIIILITAFFTASSIAFALLAQEWWSSSAKITKAQPQNL 60 Query: 80 QELEKSF--------------TKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSP 125 ++ T L +LD +D F FI F S + +L +S Sbjct: 61 AAYQQQVRQFQPVFNIYQEDGTVLVSKELDSLVDSKVLFQRFINAFNSTNNKRSFLDNSA 120 Query: 126 YVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQ 185 + + D+ A + + + + ++ D + +T++F T E + Sbjct: 121 EFQEFKSSMAVGSSDMSVD-EARAFRAEWFNRISAFTADNKGPNSPYTINFQTMTKESSF 179 Query: 186 TVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLD 245 +L+ YI V +++ N++ + K ++ + NQL R Y+ Sbjct: 180 ELLAAYILATELNVHEDAFNNLQAIVNGKRNELVQQKRILESQASNQLLVETARAKYAAQ 239 Query: 246 IANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLV 305 IA +AG+ +P+ Q + FSI LGA G++ K++ ++V +++ + L+ + Sbjct: 240 IAKSAGVDRPI----QTGNEKELFSIDLGAKGLDAKVKALESVKNLSVIEPRLQEINAKL 295 Query: 306 EQLTKAHVN-DVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMA 364 L ++ V F F++ + P+ +D P + +IV+ + IG + G VL+R+A Sbjct: 296 TMLNNLDIDRTVEFQTFRFLENVEQPITRDKPKRVLIVLFGSFIGMLFGAGFVLIRFAFR 355 Query: 365 SR 366 Sbjct: 356 KE 357 >UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C5S1B1_9PAST Length = 378 Score = 199 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 72/378 (19%), Positives = 134/378 (35%), Gaps = 28/378 (7%) Query: 14 FPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTP 73 + +N+EIDL+ L+ LW K ++ + +F ++WTS A V Sbjct: 1 MSSQSKMNSANDEIDLIELVKTLWDKKIWIIISTVICTAIAGIYAFTAKEQWTSKAEVIA 60 Query: 74 PEPVQWQEL---EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQ 130 P+ K + ++ + D F F +S+ E+ S Sbjct: 61 PKVTDLGSYFNVRKEYARILGQEFDAGALANGLFAKFNLLSESLDERNEFFVQSDVYKKL 120 Query: 131 LKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSG 190 + DE + L+ + A+ KK+ + +SF A T E+AQ L Sbjct: 121 I--EGKDEKSQRSILSNLTRENIAITKPDPKKEPD---LIGRRISFLAETPEDAQLTLEK 175 Query: 191 YIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAA 250 +I + S + LEN L + + Q ++ L+ +L+IA A Sbjct: 176 FIAFTSQSAYQLELENFLINLNEVLSDLTYEKTKFERDLSIQRSVQLENLHNALNIAKEA 235 Query: 251 GIKKPVYSNGQAV--------------------KDDPDFSISLGADGIERKLEIEKAVTD 290 GIK + G D + LG ++ ++++ Sbjct: 236 GIKDYAKAFGATNDTALQAIAMSETKIPLSDSKLSDGTYLFMLGEKYLQAQIDVLTQKGV 295 Query: 291 VAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGG 350 + + + V + F YQ SP PV KD P + I++ A+ GG Sbjct: 296 IYPPRYYQVSELLKELEPLLVKVKEAKANAFSYQASPDYPVVKDKPKRLFILLGGAVAGG 355 Query: 351 MVACGGVLLRYAMASRKQ 368 +++ +++ Y ++ Sbjct: 356 LLSALVLIMNYLFKQNRR 373 >UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aeromonas hydrophila RepID=Q8KNM2_AERHY Length = 362 Score = 198 bits (503), Expect = 2e-49, Method: Composition-based stats. Identities = 102/372 (27%), Positives = 171/372 (45%), Gaps = 17/372 (4%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 M+ I + + S NEIDL L SVLWR K ++ + FA AG+ + + Sbjct: 3 MNKQQIDNLDNKLPQGWQATS--GNEIDLYELFSVLWRQKIQILMITVVFAIAGIGYALL 60 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKI----DRTEAFNLFIKKFQSVSL 116 PQ W S + + PP + + LE +L + I ++ + F+ F S + Sbjct: 61 APQVWVSQSQIKPPSLQEVESLELRVNQLINAQIPATIFDSFNKAALYGDFVSNFNSFNN 120 Query: 117 LEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 176 ++L Y+ + A I + RA++ K V+ ++ D PS + TLSF Sbjct: 121 KRQFLIEKGYLDMDAEAAGITDDKGKRALLR-----KMVNGISAVALDAPS--DNITLSF 173 Query: 177 TAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDAN 236 A T+ EAQ L YI +I + + + + + + + + T QL + Sbjct: 174 GAATATEAQQRLEQYIAFIQQQEIVSKSKELETIWQNRIKILLSQYDSIKADTLTQLKDD 233 Query: 237 IQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNG 296 + R YSL I+ AAGI+ PV + F+I GA + KL++ K + ++ LN Sbjct: 234 VSRTEYSLRISRAAGIETPVENLNVRDG----FNIEWGAKALAEKLKVLKELKNLELLNP 289 Query: 297 ELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGG 356 L + + + L + +F F Y SPS P+ +D P + ++V+L+ L+GGM+ G Sbjct: 290 ALSDLRLQLSSLRAIKLEQQSFQSFSYLASPSEPLSRDKPKRPLVVVLATLLGGMLGIGI 349 Query: 357 VLLRYAMASRKQ 368 VL R+A +Q Sbjct: 350 VLARHAFRRPEQ 361 >UniRef50_Q3YTC2 O antigen chain length determinant protein n=5 Tax=Enterobacteriaceae RepID=Q3YTC2_SHISS Length = 346 Score = 196 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 74/352 (21%), Positives = 141/352 (40%), Gaps = 11/352 (3%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQW 79 + +EIDL L+ LW+ K ++ V + +F ++WT+ + P + Sbjct: 1 MPKAEDEIDLFELLGTLWKKKWVILCVTLLTTGLAAVYAFTAKEQWTAKTYIQAPRIAEL 60 Query: 80 QE---LEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKI 136 +++ ++ LD F+ I +S ++L S+ Y KE Sbjct: 61 GSYLKFHQAYARILNQPLDTNALANGLFSDLILIAESPDTKVKFLESTEYYK---KETNN 117 Query: 137 DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 196 + + I + K + K+K S + + +A +++EA +L GY+ ++ Sbjct: 118 LSTEQDKKIWLAEQANKGLVITPPKEKGNTS---YYIIQASADSAQEAYKLLQGYLKNVN 174 Query: 197 TLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPV 256 V SL+ + +++ + K++ I + L A AGI Sbjct: 175 NQAVTLSLDEFGQNVNTLLVNLNKEIIDIDFQRKSEKLDQIAHIQRDLTTAEQAGIIDYR 234 Query: 257 YSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDV 316 S G + LG + +L+ K + RQ +++L +++ Sbjct: 235 SSKGGFDNAQSSYKFLLGEKLLSAELKATKDAPIIYPFRYYEVKRQ--IDELEGMLRDNI 292 Query: 317 NFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQ 368 ++YQ+ PS PV KD P KA+I+IL AL G M A G L+ + + + Sbjct: 293 QAQAYRYQMKPSEPVIKDKPNKALILILGALPGAMFAIVGTLVYATLKDKTK 344 >UniRef50_A7JUL8 O-antigen chain length determining protein n=2 Tax=Pasteurellaceae RepID=A7JUL8_PASHA Length = 375 Score = 193 bits (490), Expect = 8e-48, Method: Composition-based stats. Identities = 80/368 (21%), Positives = 136/368 (36%), Gaps = 28/368 (7%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ 78 S++EIDL+ + LW K ++ F + +F ++WTS A V P+ + Sbjct: 7 SHEQSSDEIDLIEIFRALWDKKWWIVITTFITTLLAGIYAFTAKEQWTSKATVIAPKLTE 66 Query: 79 WQELEKS----FTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEA 134 E LRV +D FN F + QS E+ +S Sbjct: 67 LGEYLNVRREYSRILRVDPVDPNALSASLFNNFNRLAQSQDTKNEFFITSNVYKTL--AE 124 Query: 135 KIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDY 194 DE + LS + + +KK TLSF+A T EAQ L + + Sbjct: 125 GKDEQGQRTVLSNLSNENTSFIIPDAKKDPNA---IGRTLSFSAETPMEAQDTLGKLVQF 181 Query: 195 ISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKK 254 I++ LE+ + + + + + ++ LN + + A AGIK+ Sbjct: 182 INSKAFAVELEDFLVDFQNVLTALQYEKSLIQEDLSVNKSVQLENLNKAYETAQKAGIKE 241 Query: 255 PVYSNGQAVKD-------------------DPDFSISLGADGIERKLEIEKAVTDVAELN 295 + Q+ D + LG ++ ++++ V Sbjct: 242 YSKAFNQSDASNIAAALSDTKISLSDSKLADSSYLFMLGEKYLKAQIDVANEKGVVYPPR 301 Query: 296 GELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACG 355 + Q + V F YQ SP PV KD P K II+++ A IG M++C Sbjct: 302 YYQIDYQLKQLEPLFEKTKTVKTQTFSYQASPDYPVIKDKPKKVIILLIGAFIGLMISCL 361 Query: 356 GVLLRYAM 363 ++L + + Sbjct: 362 SIILTHYL 369 >UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae RepID=A6ADU0_VIBCH Length = 377 Score = 192 bits (488), Expect = 1e-47, Method: Composition-based stats. Identities = 88/390 (22%), Positives = 179/390 (45%), Gaps = 33/390 (8%) Query: 1 MSSL-NIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISF 59 MSSL N +P+Y A P+N+EIDL L LW+ K ++ F A + + Sbjct: 1 MSSLANTPPVQPPQYPNY--AYPANDEIDLKELFLALWQGKWLIILCTLVFTVATITYAL 58 Query: 60 ILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--------------DLDIKIDRTEAFN 105 + + W++ A V+ P+ +++ + + L LD ID F Sbjct: 59 TVQEWWSAKAKVSQPQLQDIASYQQAVKRYQPLFDVYQEDGTIIISETLDSLIDAEVIFK 118 Query: 106 LFIKKFQSVSLLEEYLRSSPYVMDQLKE--AKIDELDLHRAIVALSEKMKAVDDNASKKK 163 F+++F + ++ ++ ++ K+ K D L E++K V Sbjct: 119 RFLQEFNANGTKLRFMETNTTFLELRKDLLNKDDPQRLQAFYEQWFERIKGVSIGE---- 174 Query: 164 DEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLA 223 ++TLSF + + +L Y+ +++ ++ ++ +++ + L K +++ Sbjct: 175 ---KEDGAFTLSFQSVDKISSLALLREYVQFVNQIINQQLKDDLNSILVAKYGELRQQET 231 Query: 224 QDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLE 283 + +T+ +L ++R Y+L+IA AA IK+PV Q + + F+I++G+ ++ K++ Sbjct: 232 NLQQQTQLRLQVELERTQYALNIAEAADIKQPV----QNLGEQEIFAINIGSRALKAKVD 287 Query: 284 IEKAVTDVAELNGELRNRQYLVEQLTKAHVN---DVNFTPFKYQLSPSLPVKKDGPGKAI 340 K++ D++ L Q + Q ++ + F Y P+ +D P +A+ Sbjct: 288 ALKSIKDLSVFEPRLAILQTKLSQFGLETLSAGTKWSINSFYYLEQAKQPLSRDKPKRAL 347 Query: 341 IVILSALIGGMVACGGVLLRYAMASRKQDA 370 IV+L +GGM+ VL+R+A S ++ A Sbjct: 348 IVVLGGFLGGMLGVAIVLVRFAFRSEEKRA 377 >UniRef50_C9P0E2 Regulator of length of O-antigen component of lipopolysaccharide chains n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9P0E2_9VIBR Length = 383 Score = 192 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 84/384 (21%), Positives = 163/384 (42%), Gaps = 22/384 (5%) Query: 3 SLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILP 62 + + P P + P ++EIDL L+ LW K ++ FA ++ + Sbjct: 4 QIQQSPNEQQYSPQLPNSFPVSDEIDLRELLEALWNGKLIIIITTLVFAVGAVVFALNSQ 63 Query: 63 QKWTSAAVVTPPEPVQWQELEKSF--------------TKLRVLDLDIKIDRTEAFNLFI 108 + W+S A VT +P ++ T L +LD +D F F+ Sbjct: 64 EWWSSKAKVTKAQPQDIAAYQQQVKQFQPVFDIYQDDGTVLVSEELDNLVDTEVLFKRFV 123 Query: 109 KKFQSVSLLEEYLRSSPY---VMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDE 165 F S + ++L SS +L+ E + + A + K+D Sbjct: 124 DAFNSSNNKRDFLDSSSEFRAFKAKLETETETETETEAEAEVTRQLYAAWFQKITVKQDG 183 Query: 166 PSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQD 225 + + +S + T E + ++L+ YI I + +L N++ ++ K ++ Sbjct: 184 IGKQSPYDISLQSTTKESSYSLLNEYIGIIKRKAHQNALNNLQAVVDGKRNELIQQKRIL 243 Query: 226 RIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIE 285 + N+L I+R +++DIA AAG+ +P+ +N F I LG +E K++ Sbjct: 244 ESQAVNKLVVEIERAKFAMDIAKAAGVTQPIRTNSSN----EIFGIDLGTKALEAKVKAL 299 Query: 286 KAVTDVAELNGELRNRQYLVEQLTKAHVN-DVNFTPFKYQLSPSLPVKKDGPGKAIIVIL 344 + V +++ + L+ ++ L ++ + F F++ S P+ +D P + +IVIL Sbjct: 300 ELVKNLSVVEPRLQQINAKLDMLEYLKIDRSIRFQTFRFLESVDKPISRDKPKRTLIVIL 359 Query: 345 SALIGGMVACGGVLLRYAMASRKQ 368 L+GG + VL+R+A + Sbjct: 360 GTLLGGTLGVAIVLIRFAFRREQD 383 >UniRef50_A1JMR4 O-antigen chain length determinant n=5 Tax=Yersinia RepID=A1JMR4_YERE8 Length = 363 Score = 191 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 81/380 (21%), Positives = 163/380 (42%), Gaps = 32/380 (8%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 MS + + + E+DL+ +IS+++R+ K + V+ F G + F Sbjct: 2 MSDRSQGNDKKPSPFGKYILPSNKEEVDLIEIISIIFRSSKLIFIVLAIFTLVGGGVVFF 61 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 P++WTS A+V+ + Q LE + L VL++D+ I + F K + S +L +Y Sbjct: 62 SPKEWTSYAIVSVTSDGKMQPLESIESSLSVLNIDLNITADDLLMDFRKYYSSKDMLSKY 121 Query: 121 LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT 180 + + + ++ L++++ Sbjct: 122 MSK-----------------------EKVNANNFAGLKGKNINSDSDVKGNYILTYSSNL 158 Query: 181 SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 + V +GY++YI+ V + ++ ++ + E+ + +N+ IQRL Sbjct: 159 EYGLKDVFTGYVNYINRKVNDNLNDQIKFTIDTAKKMATEEYNLALQQVENEHKIRIQRL 218 Query: 241 NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN 300 Y+ IA AAG++KP ++ IS+G D + R+LEIE+++TD+ +N +L N Sbjct: 219 EYAASIAKAAGLQKPAIGAFDISASSNNYPISMGYDLLNRQLEIERSITDLTSVNADLLN 278 Query: 301 RQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGP---------GKAIIVILSALIGGM 351 ++ + ++T ++ F Y PS P++ P + +I + IG + Sbjct: 279 KKLYLNKITALQPVVIDVPTFNYLQEPSDPLQHSVPSEPILQNSRKGLLTIISFSFIGLI 338 Query: 352 VACGGVLLRYAMASRKQDAM 371 + VL+R+ + R + Sbjct: 339 GSITFVLMRFFVRERHNSRL 358 >UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=174 Tax=Enterobacteriaceae RepID=WZZE_ECO57 Length = 348 Score = 189 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 71/357 (19%), Positives = 134/357 (37%), Gaps = 21/357 (5%) Query: 11 DAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAV 70 P P A + NE+D+ L LW K ++ + AFA L +F Q+W+S A+ Sbjct: 2 TQPMPGKP-AEDAENELDIRGLFRTLWAGKLWIIGMGLAFALIALAYTFFARQEWSSTAI 60 Query: 71 VTPPEPVQWQELEKSFTKLRVLDLDIKIDR-------TEAFNLFIKKFQSVSLLEEYLRS 123 P LR LD+ + EA+ F+ + S E+ Sbjct: 61 TDRPTVNMLGGYYSQQQFLRNLDVRSNMASADQPSVMDEAYKEFVMQLASWDTRREFWLQ 120 Query: 124 SPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEE 183 + Y ++ + L ++ + S + A T+ + Sbjct: 121 TDYYKQRMVGNSKADAALLDEMI----NNIQFIPGDFTRAVNDS------VKLIAETAPD 170 Query: 184 AQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYS 243 A +L Y+ + S + ++ +T K ++ + K D + + + Sbjct: 171 ANNLLRQYVAFASQRAASHLNDELKGAWAARTIQMKAQVKRQEEVAKAIYDRRMNSIEQA 230 Query: 244 LDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQY 303 L IA I + D + LG ++ +LE +AV +L+ + + Sbjct: 231 LKIAEQHNISRSATDVPAEELPDSEM-FLLGRPMLQARLENLQAVGPAFDLDYD--QNRA 287 Query: 304 LVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR 360 ++ L D F ++Y +P PVK+D P +A ++I+ ++GG++ G L R Sbjct: 288 MLNTLNVGPTLDPRFQTYRYLRTPEEPVKRDSPRRAFLMIMWGIVGGLIGAGVALTR 344 >UniRef50_Q31F07 Lipopolysaccharide biosynthesis protein Wzz n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31F07_THICR Length = 364 Score = 187 bits (473), Expect = 7e-46, Method: Composition-based stats. Identities = 66/359 (18%), Positives = 133/359 (37%), Gaps = 12/359 (3%) Query: 14 FPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTP 73 P + + ++EIDL L + L + K TV G + +F + + S A + P Sbjct: 7 RPHFEEKASMDDEIDLFELWNGLVQEKLTVFLSFLMIIGLGTIYAFSVTPVYKSDAYLLP 66 Query: 74 PEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKE 133 P+ + Q++ + L + D + FN + + S + L + + + + Sbjct: 67 PKASEIQDINRLNATLGIGDAY---SVNDVFNTYTENLLSRARLLTFFKQHNLIAFYEPD 123 Query: 134 AKIDELD-LHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYI 192 K E + + K + TL +++ + L+ YI Sbjct: 124 FKNKEKEVREKEFNDSFSTFVEEFGITHPKDGAKRVMVEMTL---PVDADQVKEFLTQYI 180 Query: 193 DYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGI 252 I K+ ++ + + Q ++ + + + I RL+ S+ +A I Sbjct: 181 QKIRIETRKQITTDIFTRKQFLMQQLINQINAVKETAQKHREDKIARLDESIKVARQLKI 240 Query: 253 KKPVYSNGQAVKD----DPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQL 308 K+P+ + LG +E + ++ K G+LR + L Sbjct: 241 KEPLSAGPAMNIQGVQNQGLPLYYLGYQVLEAEKDVLKKRKTDDAFTGKLRELEERYNLL 300 Query: 309 TKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRK 367 +N F P + +K P KA+I+ +S ++G M+ L+R A+ +RK Sbjct: 301 DSVEINGDLFKVVNVDQPPEI-GEKVKPKKALILAVSGVLGLMLGIFIALIRRAIKNRK 358 >UniRef50_Q8KN75 Wzz n=1 Tax=Pseudomonas aeruginosa RepID=Q8KN75_PSEAE Length = 344 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 66/354 (18%), Positives = 130/354 (36%), Gaps = 21/354 (5%) Query: 18 PLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPV 77 P P + +IDL+ L + R K + + ++ +F + + A V PP Sbjct: 7 PRVVPIDGQIDLVELAQGILRQKWLIASFFLLATALAVVYAFYSRPIYEARASVLPPSLN 66 Query: 78 QWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKID 137 + + + + +++FI+ + + + + + L + + Sbjct: 67 EISGFNLGRKESDLG----VFSVKDIYDVFIRNLMAEETRQNFFKEK--YLPTLGDKGAE 120 Query: 138 ELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 197 LD ++K + +S A S+ A ++ YI+ ++ Sbjct: 121 SLDALYNKFNDELQIK----------ASVDGSGRYLISAVAHESDTAAYLVDSYIEMVAG 170 Query: 198 LVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVY 257 + E L+N++ L +K+ ++++ R K + + I RL +L IA A I+ P Sbjct: 171 ISKNEMLKNIKRDLHVKSVNLEQQINIMRAMAKTRREDTILRLREALKIAEALKIENPPS 230 Query: 258 SNGQAVKDDPDFSI-----SLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAH 312 GQ + I GA + ++ +A G LR Q TK Sbjct: 231 FEGQTERQLSSIMIGELMYMRGAKALRAEISSLEARESDDSFIGGLRALQERYALYTKLS 290 Query: 313 VNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASR 366 ++ + ++ K P K II++L A+ G + C LLR R Sbjct: 291 PDESQVSVYRKDGVVETSDKPIKPKKLIIIVLGAVFGIFLGCLVGLLRIVQFRR 344 >UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycetemcomitans RepID=Q9JRS3_AGGAC Length = 369 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 70/368 (19%), Positives = 138/368 (37%), Gaps = 29/368 (7%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQEL 82 N+EIDL+ LI VLW + ++ F + F ++WTS A + P + + Sbjct: 7 ENDEIDLVELIKVLWNKRLWIILFSLFFTTIAGIYVFTAKEQWTSKAEIIAPRITELGDY 66 Query: 83 ---EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDEL 139 +K + ++ + D + F F +S+ +++ S + + E Sbjct: 67 FLVKKEYARILGSEFDASMTANNLFGQFNLLSESLDERKKFFEKSDFYKK--ESEGKSER 124 Query: 140 DLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLV 199 + + + L K A+ +KK + +SF A T EAQ VLS +I ++ Sbjct: 125 EKLQILFDLMTKNIAIKKPDTKKYPD---LIGNQISFYAETPIEAQNVLSKFISTVNISA 181 Query: 200 VKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYS- 258 + L+ + + + ++ L +L+IA AGIK+ S Sbjct: 182 YQIELDKFLTDFNEIIADLNYEKIKFERDLRIHKSVQLKNLESALNIAKEAGIKEYSKSF 241 Query: 259 --------------------NGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGEL 298 + D + LG ++ ++++ K + Sbjct: 242 SIADPQLVLQAIAVSEAKVPLSDSKLSDSTYLFMLGETYLKAQIDVLKNNNIIYPPRYYQ 301 Query: 299 RNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVL 358 + Q + V F YQ SP PV +D P K +I+ + ++G ++ +L Sbjct: 302 VSSQLSELEPLLIKAKQVKANAFSYQASPDYPVVRDKPKKLLILSIGFILGLILGSIYIL 361 Query: 359 LRYAMASR 366 R ++++ Sbjct: 362 FRKLVSNK 369 >UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropneumoniae RepID=B0BR52_ACTPJ Length = 370 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 79/370 (21%), Positives = 140/370 (37%), Gaps = 26/370 (7%) Query: 18 PLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPP--- 74 +++ +N EIDL+ L+ VLW+ K + V F + +F +KWTS V P Sbjct: 6 QVSNQTNEEIDLIELVRVLWKKKLLIAIVTCIFTALAAVYAFTAKEKWTSQTEVIAPRVT 65 Query: 75 EPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEA 134 + ++ L K + + + R E LF + S + +++ Sbjct: 66 DISEYLSLRKEYNLIIGSEFKENEIRNELSELFSRYVLSYDEAIAFFKTTDTYKKL--AE 123 Query: 135 KIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDY 194 +E+ L RA+ + + V +KK ++ + T+ AQT L+ +I + Sbjct: 124 TENEVGLQRAVAEFTTESLKVIKPDAKKDPNA---LGSKIAISFDTALSAQTTLNDFICH 180 Query: 195 ISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKK 254 IS S ++ + Q IQ L +LD+A AGIK+ Sbjct: 181 ISDTSFNFSKNEFIYWIKESISSLNYEKEVIEQDQSIQRKVQIQNLETALDMAKKAGIKE 240 Query: 255 PVY------------------SNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNG 296 + D + LG ++ +L+I K V Sbjct: 241 YSSALSSNSSVANLAVSDTKIPLSDSKLADGTYLFMLGEKNLQAQLDIAKTKEIVYSPRY 300 Query: 297 ELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGG 356 Q L V V F Y SP LP+K+D P + I++++ A+IGG+++ Sbjct: 301 YQIQEQLLKLNTLLPKVEKVTGQSFSYISSPELPIKRDWPKRFILLLIGAVIGGVLSSLW 360 Query: 357 VLLRYAMASR 366 V+ + + Sbjct: 361 VIGKQIFGQK 370 >UniRef50_Q2BJF5 O-antigen chain length regulator n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJF5_9GAMM Length = 353 Score = 179 bits (453), Expect = 1e-43, Method: Composition-based stats. Identities = 66/361 (18%), Positives = 124/361 (34%), Gaps = 19/361 (5%) Query: 16 DYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPE 75 + P N+ IDL L LWR+K ++ + G SF+ + S+AV+ P Sbjct: 4 KHSPEHPLNDHIDLFFLFLQLWRSKLLILGITALITLCGAAYSFLSTPIYQSSAVLASPS 63 Query: 76 PVQWQELEKSFTKLRVL----DLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQL 131 E+ K T L+ + + T+ F FI S +L + Sbjct: 64 ESDLIEIRKIHTLLQQIIYSETASEEASTTDIFGQFISALNSNRYKNSFLSKPELLDHFR 123 Query: 132 KEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGY 191 + + + T+S + E + + L+ Y Sbjct: 124 NDNTTQLQARKEF-----------NRALKVTLPDTEEINHITISLRTKSPELSSSWLNEY 172 Query: 192 IDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAG 251 I + KE N++ ++ + + + L I+ + +L IAN G Sbjct: 173 ISFAHQQFSKELTNNLQARIHAAQNNLLLTIQSKKANYHSNLIEEIKSIEEALIIANEIG 232 Query: 252 IKKPVYSN----GQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQ 307 + P+ + Q + D LG+ + +L KA + L + + +E Sbjct: 233 LVNPLKTETNFGKQHIIDQMRGIYRLGSKSLNAELNALKAREKNLDNIPGLSDEKLKLEL 292 Query: 308 LTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRK 367 L ++ + L+ K P K II++LS + G ++ VL + R+ Sbjct: 293 LANIDLDSKLISAMILDLAAEPAPKPIEPRKTIIILLSIVAGLLIGIMTVLAGNLVRHRR 352 Query: 368 Q 368 Sbjct: 353 T 353 >UniRef50_Q1Z8B9 Ferric enterobactin transport protein n=1 Tax=Photobacterium profundum 3TCK RepID=Q1Z8B9_PHOPR Length = 349 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 63/363 (17%), Positives = 137/363 (37%), Gaps = 20/363 (5%) Query: 14 FPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTP 73 P N+EI + + L +K ++ + +F + W+S+ ++T Sbjct: 1 MPSQIPNGNGNSEIGINFFMQCLQNSKWLLILCSLLTGIVASIYAFNSQEWWSSSEIITE 60 Query: 74 PEPVQWQELEKSFTKLRVLDLDI-----KIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVM 128 L + L ++ + F FI ++ E++ S+ + Sbjct: 61 ANYNDLSSLRNDVSPLFIVAAKTEKLEKIFSPNKIFIDFINEYNKPLTKSEFILSNDLLK 120 Query: 129 DQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVL 188 ++ K++E A V K ++ L F + ++EE+Q +L Sbjct: 121 IKMSNQKLEEEQQKNAFVKFWSN----------KIKYKKQGDNFKLIFESNSAEESQLLL 170 Query: 189 SGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIAN 248 S Y ++ V +++V++++ + K K + ++ +L + Sbjct: 171 SQYSKFVHERVKNNIIDDVKSRIVSLVSLLEVKNDVLNEAVKANIKLEVEITKLALSVTK 230 Query: 249 AAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQL 308 A+ P+ + V D I LG+ + K ++ AV D + + E+ + ++ L Sbjct: 231 ASNFSNPI----ENVNGDNFLPIELGSKALSEKYKVLSAVDDFSIFDPEIHRIKSEIKML 286 Query: 309 TKAHVN-DVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRK 367 VN ++ F Y LP+ D P +++IVI+ IG + C + R + Sbjct: 287 NDIDVNYEMEFNVIGYVNVAELPLNSDKPKRSLIVIIGLFIGLFLGCVISVYRESSRYYN 346 Query: 368 QDA 370 ++ Sbjct: 347 KEK 349 >UniRef50_Q02PW5 O-antigen chain length regulator n=19 Tax=Pseudomonas aeruginosa RepID=Q02PW5_PSEAB Length = 360 Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 59/325 (18%), Positives = 114/325 (35%), Gaps = 20/325 (6%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ 78 + NEID + LI LW K V ++ F A +F+ + + + PP Sbjct: 8 RQTSKRNEIDFIELIQGLWSQKWLVFSLTFLGAVLAGSYAFLSKPVYEARVALLPPSLSD 67 Query: 79 WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 + + L ++ +++F + QS ++ R + ++ ID Sbjct: 68 VAGFNIARGRDSGLP---PFTVSQVYSVFTRNLQSEGTRRQFFREVYLPSLEERKGSIDG 124 Query: 139 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 198 L +A D+ S + L +T+ E+A Y D + Sbjct: 125 L------------YRAFSDDVSVNRPSKDLPERYTVILNRQDPEQAAKWAKQYADLAALR 172 Query: 199 VVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYS 258 + E N + +LE+K++ +++ R K + + I RL +L +A A G++KP Sbjct: 173 SMDEMRGNAQRELEVKSRNILQQIDTLRQVVKERRNDRIVRLKEALQVARAVGVEKPPLI 232 Query: 259 NGQAVKD-----DPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHV 313 Q + + G +E +++ + T L Q + + Sbjct: 233 GAQIDQQLSAIMEGSLMYMRGTKALEAEIKALEKRTSDDPFIPALPGLQEQLALYESKQL 292 Query: 314 NDVNFTPFKYQLSPSLPVKKDGPGK 338 N F+ +P P K Sbjct: 293 NFDRVAVFRQDGGVEIPDDPIKPKK 317 >UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VMI6_ACTSZ Length = 346 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 82/365 (22%), Positives = 151/365 (41%), Gaps = 26/365 (7%) Query: 12 AHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVV 71 F ++P +NEIDL++LI VLW+ K TV+ F FA + +F +KWTS A V Sbjct: 1 MTFSNHPSIPQQSNEIDLIDLIKVLWKKKLTVILSAFLFAIIAAIYAFTATEKWTSTAEV 60 Query: 72 TPPEPVQWQELEKSFTKLRVL----DLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYV 127 P V + + + D+ + + F + S + + S Sbjct: 61 IAPTGVDMGAYGNAKLRFAQIAKLPDITVDTVSKSLYAKFDRLAFSQNERRNFFSQSDEY 120 Query: 128 MDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTV 187 +++ DE + + AL+ + AV KK + +SF+A T E AQ Sbjct: 121 KGLIQD--QDEKAQRKILSALTTEYTAVVRPDPKKNADMFGN---KISFSAQTPENAQKT 175 Query: 188 LSGYIDYISTLVVKESLENVRNKLEIKTQFE---KEKLAQDRIKTKNQLDANIQRLNYSL 244 L+ ++D+I+ + + K+ + K+++ + + K Q N + LN Sbjct: 176 LAQFVDFINEKAFELDKNEFQMKIAQQIDNLTNEKKEIEESLVVQKEQNTENAKPLNAIP 235 Query: 245 DIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYL 304 + S+ + D + G D +L I + +L+ Q Sbjct: 236 QSLPQTNLNSASQSSQDSALDPAMALLVYGDDYSRMQLRIITGQIN------QLKALQNA 289 Query: 305 VEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMA 364 V+ LT + YQ SPS PV++D P + I++++ A++GG++ C V+ + + Sbjct: 290 VKGLT--------AQTYTYQASPSYPVQRDWPKRVILLLVGAVLGGILGCVWVIGKQILG 341 Query: 365 SRKQD 369 + Sbjct: 342 GNNNE 346 >UniRef50_Q5R093 Chain length determinant protein n=1 Tax=Idiomarina loihiensis RepID=Q5R093_IDILO Length = 336 Score = 166 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 61/364 (16%), Positives = 132/364 (36%), Gaps = 49/364 (13%) Query: 9 GSDAHFPDYPL-ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTS 67 G + P+Y P ++EIDL L ++W K ++A+ F FA ++ S LP + + Sbjct: 18 GPGQYPPNYYNGPYPQDDEIDLRELFGIIWDGKWIIIAITFVFAVGSVIYSLSLPNIYKA 77 Query: 68 AAVVTPPEPVQWQELEKSFTKLRVL-DLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPY 126 A + P E Q Q L L L + + + + + ++ QS ++ +++ Sbjct: 78 EATLAPTEEAQGQGLGGELGGLANLAGISVGSGKVDKVTMAMEILQSRQFIKNFVQKHNI 137 Query: 127 VMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQT 186 + + I+A+ E ++ + ++ W + + Sbjct: 138 LPE---------------IMAVKEWNESSGELVFNEEVYNPNANKWVRKTESSKQPAPTS 182 Query: 187 VLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDI 246 + Y++ ++ E E + + + + IQ +N D Sbjct: 183 WV--YVNVFKNGLLVEKDEETPGLVNLSVSHRSPII------AHRWAEWLIQDIN---DH 231 Query: 247 ANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVE 306 IK+ S + ++ +L E ++ + ++ +L +Q Sbjct: 232 MRQRDIKEAQSSM----------------EYLQNEL-GETNLSSMQQVFYQLIEKQIQTI 274 Query: 307 QLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASR 366 L F+ +P +K P +A+I I+ +GG ++ V +R+ + S Sbjct: 275 MLANVRPE----YVFQVLDPAVVPEQKSAPSRALICIVGTFLGGFLSLLVVFIRHLIRSS 330 Query: 367 KQDA 370 K A Sbjct: 331 KSKA 334 >UniRef50_C9P0B3 Lipopolysaccharide biosynthesis n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9P0B3_9VIBR Length = 320 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 62/366 (16%), Positives = 123/366 (33%), Gaps = 47/366 (12%) Query: 4 LNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQ 63 +N + +F S N+EIDL + LW K V+ F G+ + P Sbjct: 1 MNKPVIHERNFTQVQDLSIVNDEIDLRGVFLALWSGKWVVIVTAVLFTIGGVWFALSQPN 60 Query: 64 KWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRS 123 + ++A + + L ++ L I+ + +++ Sbjct: 61 TYRASATLVSANDEKSGGLAAMASQFGGLASLAGINVGGGRTDDKSVSLATLESRKFI-- 118 Query: 124 SPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEE 183 A ID+ L ++A + D +K P Y E+ Sbjct: 119 ---------NAFIDKYALLPILMA----TEYWDKENNKLVLNPEFYDGIRWLNDPEDPEK 165 Query: 184 AQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLN-Y 242 + ++ + + L + + ++ +I L+ Y Sbjct: 166 SL-----------EPTAWQAYKKFKGVLNVSEATDTGIVS-----------VSITHLSPY 203 Query: 243 SLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQ 302 +K+ + + + +I + +E++L+ K V D+ + +L Q Sbjct: 204 VAQQWTQWLVKELNLWMKEESLTETNRNI----EYLEQQLDRTK-VVDMQNVFYQLIEEQ 258 Query: 303 YLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYA 362 L + + FK P +P +K GP +A+I IL+ L GG++ VL+RYA Sbjct: 259 TKTLMLAEVK----DEYAFKVIDPPVVPEEKVGPKRALICILATLFGGILGVAIVLIRYA 314 Query: 363 MASRKQ 368 Sbjct: 315 FRREND 320 >UniRef50_Q8KNB4 Wzz n=2 Tax=Pseudomonas aeruginosa RepID=Q8KNB4_PSEAE Length = 345 Score = 163 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 56/356 (15%), Positives = 120/356 (33%), Gaps = 18/356 (5%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQEL 82 ++ E+DL+ L+ LW K ++ +++ + V PP + Sbjct: 3 ADGEVDLVKLVKELWVNKVLILLTTLLALIGSFTYAYLSKPVYEYRVAVVPPALGSIEGF 62 Query: 83 EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLH 142 R + + +F + S +E+ + Q+ E E + Sbjct: 63 NIG----RRENGLDAYTVRSIYAIFSRNLLSDENKKEFF--YKIYLPQVGEGAESEDEQE 116 Query: 143 RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKE 202 S+++K N +T+ E T ++ + V E Sbjct: 117 EFYKKFSKEVKIDPANKPD-------ADRYTVIVEGTKREVLATWAQAFVRLAADRAVHE 169 Query: 203 SLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQA 262 +++ +++ + ++ + K + D I RL +L IA + I P G + Sbjct: 170 VIDSAGRDFQVRNAAMQSRITVLQNMAKGRRDDRIARLKEALLIAESLKIDGPPLIEGAS 229 Query: 263 VKD-----DPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVN 317 + D D GA + ++ ++ + A ELR Q + + V+ Sbjct: 230 EQQLSSIMDGDLMYMRGAKALRAEINNLESRSVDAPFIPELRTLQEKLSWNSSLSVDSDA 289 Query: 318 FTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMA 373 +K S + P K +IV + L G ++ +L ++ + D + Sbjct: 290 VAVYKEDEGLSFSNQPIKPKKILIVTIGTLAGLIIGILLAVLAGFISKLRSDGSLR 345 >UniRef50_P35272 Chain length determinant protein n=110 Tax=Enterobacteriaceae RepID=WZZB3_ECOLX Length = 325 Score = 162 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 81/354 (22%), Positives = 153/354 (43%), Gaps = 37/354 (10%) Query: 15 PDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPP 74 + + +IDL++L+ LWR K T++ V + + +KWTS A++T P Sbjct: 6 NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQP 65 Query: 75 EPVQWQELEKSFTKLRVLDLDIKID-RTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKE 133 + Q + + D + F F + L E Sbjct: 66 DVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSA-----------------LAE 108 Query: 134 AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYID 193 ++ + + + S K + + T+S+ T+E AQ L+ YI Sbjct: 109 TLDNQEEPEKLTIEPSVKNQQL---------------PLTVSYVGQTAEGAQMKLAQYIQ 153 Query: 194 YISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIK 253 + V +E +++++ + + + ++ L + + Q D I+++ +L AN A + Sbjct: 154 QVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVT 213 Query: 254 KPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHV 313 KP Q V D F LG++ +E ++ E V N + RQ L++ + V Sbjct: 214 KPQIQQTQDVTQDTMFL--LGSEALESMIKHEATRPLVFSSNYY-QTRQNLLD-IDNLDV 269 Query: 314 NDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRK 367 + ++ ++Y + P+LP+++D P KAI +IL+ L+GGMV G VL R A+ + Sbjct: 270 DKLDIHAYRYVMKPTLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYN 323 >UniRef50_A4Y8H9 Lipopolysaccharide biosynthesis n=30 Tax=Gammaproteobacteria RepID=A4Y8H9_SHEPC Length = 329 Score = 161 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 59/371 (15%), Positives = 127/371 (34%), Gaps = 53/371 (14%) Query: 3 SLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILP 62 + I Q + + D ++EIDL L SV+W+ K ++A+ FA ++ + P Sbjct: 2 NTQITQNPNTYQSDARFPQVQDDEIDLRELFSVIWQGKWLIIAITAIFAVGAVIFAIKQP 61 Query: 63 QKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKID-----RTEAFNLFIKKFQSVSLL 117 + S A++ P Q L ++ L ++ T+ L I+ +S Sbjct: 62 NIYKSEALLAPVSEEQGGGLSALASQFGGLASLAGVNLGGKNGTDKTQLAIEVLKSRQFT 121 Query: 118 EEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFT 177 E+++ + D + K D D +W Sbjct: 122 SEFIQKHNILADLMAAEKWDADA---------------DKIIYAPALYNEQTNTWVREVK 166 Query: 178 APTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANI 237 AP E ++ + + ++ + +K + ++ Sbjct: 167 APIKPEP-------------------------SMQEAYKVFNKIISVNSVKETGMVTLSV 201 Query: 238 QRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGE 297 + L+ I + + + +KD + ++ + +++ V D+ + + Sbjct: 202 EHLS---PIVAQQWVTWLIQDINKVMKDRDVAEANRSSEFLNKQI-ALTNVADIRTILYK 257 Query: 298 LRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGV 357 L Q + + FK P +K P +A+I +L ++GGM+ V Sbjct: 258 LVEEQAKTIMFAEVR----DEYVFKTIDPALAPEEKAKPKRALICVLGTILGGMLGVMLV 313 Query: 358 LLRYAMASRKQ 368 L+R+ M + Sbjct: 314 LVRHFMRKEQD 324 >UniRef50_Q1N5G1 Lipopolysaccharide biosynthesis n=1 Tax=Bermanella marisrubri RepID=Q1N5G1_9GAMM Length = 388 Score = 159 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 63/365 (17%), Positives = 131/365 (35%), Gaps = 24/365 (6%) Query: 21 SPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQ 80 +++EIDL +L + K V+A + L + + + V+ PP V Sbjct: 14 PNNSDEIDLFDLWDDVVENKVWVLAGLLGCIILAALYLLRATEIFETQVVIKPPSDVHVL 73 Query: 81 ELEKSFTKLRVLDLD----------IKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQ 130 EL L + +A+ K S + + + V+++ Sbjct: 74 ELNPPQLSATKLSSKGEAVIYEDEIFGLTAEQAYQEAQKAVLSKEYRKAFFKDHIPVIEE 133 Query: 131 LKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSG 190 D+L +++ NA K ++ + LSF P S+E+ +L+ Sbjct: 134 FGTVYSDKLLMNQNFANFDRLFSFSVSNAKKDTEQFT-----KLSFEFPDSQESAELLNA 188 Query: 191 YIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAA 250 ++ Y ++E + K++ + + ++ + + + K + + + LN + IA Sbjct: 189 FVVYALVKKLEEIKTTLSGKVQAEILNLQYQVDKLKEEYKGERNRTLLLLNEAKHIAEKV 248 Query: 251 GIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAE--------LNGELRNRQ 302 GI KP + Q + ++P G+ + ++ K +A+ + Sbjct: 249 GINKPAFDKNQVLTEEP-PLYMYGSKALNAEIGAIKNRDSMAKDLSFGEEYFIEGVSQLL 307 Query: 303 YLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYA 362 Y ++QL K V+ P P K +I+ L+ + G L+ A Sbjct: 308 YRIDQLKKLEVDYSKVKLALIDEEAIPPTSPIKPKKLLILALAGVAGLFGGIMLALIMAA 367 Query: 363 MASRK 367 K Sbjct: 368 FKRHK 372 >UniRef50_A1SRR6 Chain length determinant protein-like protein n=2 Tax=Psychromonas RepID=A1SRR6_PSYIN Length = 347 Score = 159 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 68/350 (19%), Positives = 143/350 (40%), Gaps = 28/350 (8%) Query: 45 AVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL------------ 92 + + + + W + V P+ L K+ + Sbjct: 1 MICAVGIAGSVYYALNAQEWWVAKGKVIAPQVNDVAALYAQSNKVSAILNSNDLLNSNSN 60 Query: 93 -----------DLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDL 141 +L + + F FI F S + +L ++P + L+ +I Sbjct: 61 NNGQDTKQVSKELVDLFEPSTLFRNFINAFNSTINKKHFLETNPAFLAYLQVKQITVPSK 120 Query: 142 HRAIVALSEKMKAVDDNASKKKDE-PSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVV 200 A + + + +++ +K S + LSF + T E + +L+ YI +I V Sbjct: 121 GSAQESRQQYLIVLNNWMNKINASLNSQTSELALSFRSATKESSAELLNEYILFIGENVR 180 Query: 201 KESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNG 260 + LE ++ + L K + +L +Q+ Y+ IA+ +G+ + + Sbjct: 181 ENQLEKFLLFIDSAKNELQVSLQMTEQKARRELAVLLQKTEYAYQIASHSGLVEYQANLN 240 Query: 261 QAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHV-NDVNFT 319 K+ F I+LG ++ K+++ K++ D++ L L ++ L K ++ +FT Sbjct: 241 ---KEGELFQINLGEKALKAKIDVLKSIQDLSVLEPSLAIMTITLDALNKLEFSDNSSFT 297 Query: 320 PFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQD 369 P++Y P+ + P +A+IVIL+ L+ GM++ L+ Y M ++Q+ Sbjct: 298 PYRYLEVVEPPLNRSAPKRALIVILATLLAGMLSIFIALVHYFMTKKEQN 347 >UniRef50_Q1QWX5 Lipopolysaccharide biosynthesis n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QWX5_CHRSD Length = 365 Score = 157 bits (396), Expect = 6e-37, Method: Composition-based stats. Identities = 60/380 (15%), Positives = 123/380 (32%), Gaps = 52/380 (13%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQW 79 A ++EIDL L++ L ++ V A + ++ ++ TP + Sbjct: 6 ARHDDDEIDLSQLLNHLIDGWYWIVGCVVAALVLAGAYLAMTTPQYETSFRATPAASSNF 65 Query: 80 QELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDEL 139 + + +A+ + S +EY+RS + A + L Sbjct: 66 AGMNLLSG--------FSVSPQDAYTTLGNRLSSFQNFQEYVRSHREAFVIPEGASLGSL 117 Query: 140 DLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLV 199 +R + + E + + +L++ P E +L+GY++ + V Sbjct: 118 FTNRL-------------DITGLTSEVNGASELSLTYRYPEGESGHRILNGYVNATAEQV 164 Query: 200 VKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSN 259 E + K +L K + + + L+ ++ A A GI+ P Sbjct: 165 WSELKNRFARANQAKIAALNTRLQVGEDKLLAEREHRLFALDNAISTARALGIEAPTTPQ 224 Query: 260 G------------QAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQ 307 ++ D +G +E + E K NG LRN + +EQ Sbjct: 225 EFGQLNPNKEVIYTSLSGDGLPLYFMGYKTLEAERETLKGKLHDGLSNGTLRNIREELEQ 284 Query: 308 ---------------LTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMV 352 L + + P A+++ L+ ++GGM+ Sbjct: 285 RHQIADMLKNDSFYPLEEGVSEHPDERVVSVIERAYPQDAPVKPRSALVLALAVILGGML 344 Query: 353 ACGGVLLR----YAMASRKQ 368 V ++ + R+Q Sbjct: 345 GVFLVFMKAGLGAVLRQRRQ 364 >UniRef50_Q1ID96 O-antigen chain length regulator protein (Wzz) n=1 Tax=Pseudomonas entomophila L48 RepID=Q1ID96_PSEE4 Length = 346 Score = 154 bits (387), Expect = 6e-36, Method: Composition-based stats. Identities = 54/313 (17%), Positives = 118/313 (37%), Gaps = 14/313 (4%) Query: 26 EIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKS 85 EID + L+ VL++ V+ V GL+ F +P ++ + PP +L Sbjct: 13 EIDFIELLVVLFKEWLLVVKVASLVFALGLVYVFYVPSRYEAKLFTIPPTQNDIAQLNYG 72 Query: 86 FTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAI 145 L L I + ++ +++ S S+ E+ + L E + L Sbjct: 73 RGGSAELPL---ISVGDVYSSYVRNLNSESMRMEFF--NDVYFPSLAEKQKTSL------ 121 Query: 146 VALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLE 205 S+ + S + + ++ ++ + EEA + Y +E L+ Sbjct: 122 --RSDLYRQFFAALSILQGGKDQSDRYLITASSSSPEEAAKWVKQYTQMAGDRAKREVLK 179 Query: 206 NVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKD 265 N+ + +K ++++ +++ + + D I RL +L IA + G+ KP + + Sbjct: 180 NIYSDALVKADNLEKQIRREQESARRERDDRIARLTEALVIARSVGLVKPPIISAELTAQ 239 Query: 266 -DPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQ 324 + + G+D +E ++ K + LR R+ V ++ ++ Sbjct: 240 MNGSLTYMRGSDALEAEIANLKKRSSDDPFISNLRQREAEVSFYRSLRIDPALIEVYQQD 299 Query: 325 LSPSLPVKKDGPG 337 +P + P Sbjct: 300 GDLIVPDRPVSPK 312 >UniRef50_C7RAP5 Lipopolysaccharide biosynthesis protein n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RAP5_KANKD Length = 328 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 63/377 (16%), Positives = 130/377 (34%), Gaps = 62/377 (16%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 M+ N +Q P + EIDL L S++W+ K ++A+ FA + ++ Sbjct: 1 MNQDNNQQNIPTQGYYPPQSRYQEEEIDLRELFSIIWQGKWLIIAITIFFAIGSVALALW 60 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNL----FIKKFQSVSL 116 LP ++ + A+V P + + +L + L ++ A + I+ S Sbjct: 61 LPNEYKATAIVQPNDSGRGGKLASLSGQFGGLASLAGVNLGAAESTDAVIAIEIMNSWGF 120 Query: 117 LEEYLRSS----PYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 172 E+++ P + E D+L L I K + S Sbjct: 121 AEQFIDKHELDVPLFAAEGWEESTDQLQLDEDIYDPQRNEWVRQAPKGKTVEPTSWELYE 180 Query: 173 TLSFTAPTSEEAQT-VLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKN 231 L S++A+ +++ + + S + K+ + + + + Sbjct: 181 QLRKRLLISQDAEKGLVNISVTHYSPRIAKQWTDWLVQDINEHMK--------------- 225 Query: 232 QLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDV 291 +L AN + +E ++ + +V ++ Sbjct: 226 ---------ERALKEANES------------------------IKYLEEQI-NQTSVAEI 251 Query: 292 AELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGM 351 + EL Q+ + L + + FK P +KD P +A+I I+ L+GG Sbjct: 252 RAVFSELIQEQHKTKMLAQVS----DEYVFKTVSEAKAPEEKDKPKRALICIIGTLLGGF 307 Query: 352 VACGGVLLRYAMASRKQ 368 ++ VL+ K+ Sbjct: 308 LSLFIVLMSGLYKREKR 324 >UniRef50_Q04866 Chain length determinant protein n=30 Tax=Salmonella enterica RepID=WZZB_SALTY Length = 327 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 81/351 (23%), Positives = 150/351 (42%), Gaps = 35/351 (9%) Query: 21 SPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQ 80 +IDL+ L+ LWR K T++ V + I +KWTS A++T P+ Q Sbjct: 12 GNDPEQIDLIELLLQLWRGKMTIIVAVIIAILLAVGYLMIAKEKWTSTAIITQPDAAQVA 71 Query: 81 ELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELD 140 + L + + ++ L E ++ + Sbjct: 72 TYTNALNVLYGGNAPKISEVQA----------------NFISRFSSAFSALSEVLDNQKE 115 Query: 141 LHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVV 200 + + S K +A+ ++S+ + T+E AQ L+ YI + V Sbjct: 116 REKLTIEQSVKGQAL---------------PLSVSYVSTTAEGAQRRLAEYIQQVDEEVA 160 Query: 201 KESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNG 260 KE ++++ + ++T+ +E L + + Q D I+++ +L A+ A I +P Sbjct: 161 KELEVDLKDNITLQTKTLQESLETQEVVAQEQKDLRIKQIEEALRYADEAKITQPQIQQT 220 Query: 261 QAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTP 320 Q V D F LG+D ++ ++ E V + +Q L++ + V Sbjct: 221 QDVTQDTMFL--LGSDALKSMIQNEATRPLVFSPAYY-QTKQTLLD-IKNLKVTADTVHV 276 Query: 321 FKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAM 371 ++Y + P+LPV++D P AI ++L+ L+GGM+ G VL R A+ S K A+ Sbjct: 277 YRYVMKPTLPVRRDSPKTAITLVLAVLLGGMIGAGIVLGRNALRSYKPKAL 327 >UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 Tax=Photobacterium angustum S14 RepID=Q1ZRK1_PHOAS Length = 347 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 74/332 (22%), Positives = 142/332 (42%), Gaps = 21/332 (6%) Query: 30 LNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKL 89 L + W+ K ++ FA AG+ ++ WTS AV+T + + ++ L Sbjct: 21 LEWVLCFWQKKFLIVITTLIFAVAGVSYAYYAQSWWTSTAVITTNKARDIRIFSENIDNL 80 Query: 90 RVLD-----LDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRA 144 V + +D F+ F + + E+L + + K L R Sbjct: 81 YVNSGVGGLVSQALDEKRLLRTFVNYFNAYNNKLEFLEGNKSIKSDFINEKEKHDFLQRF 140 Query: 145 IVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESL 204 I + + +K ++LS+TA +S ++ +LS YI++I+ V KE + Sbjct: 141 IKRI-----------NSEKVGNDSQVLYSLSYTATSSIKSHDLLSEYINFINEKVNKEVV 189 Query: 205 ENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVK 264 ++++ + + + E +I + + A I + +Y+L IA AA +KKP+ G + Sbjct: 190 SSLKSDINNQMKRLTESTVSLKINAEVKQHAEILKTDYALKIAEAADLKKPIAELGNS-- 247 Query: 265 DDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVN-FTPFKY 323 F+I +G DG++ K I D+A ++ Q + L ++ F +++ Sbjct: 248 --QIFNIEIGTDGLKEKSLILHNSKDLALFEPQIDIAQAQINFLKDINLEKAKPFNAYRF 305 Query: 324 QLSPSLPVKKDGPGKAIIVILSALIGGMVACG 355 S P+ + P K II++ S + G V C Sbjct: 306 VKDVSYPMSQAYPSKLIIILFSIIFGFSVGCF 337 >UniRef50_C3KAZ7 Putative chain length determinant protein n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3KAZ7_PSEFS Length = 438 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 59/429 (13%), Positives = 133/429 (31%), Gaps = 92/429 (21%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQW 79 +EIDL L +W+ KK ++ G+ +F+ P+ + ++V+ P + Sbjct: 9 QYLPTDEIDLFELFHAIWKQKKLIIGCTILAGLLGVGYAFLAPRVYQVSSVLRPAAINEL 68 Query: 80 QELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDEL 139 L +S K+ +A + S + R++ + + + Sbjct: 69 DALNRSEV--------YKLPPADALAKVGAQLDSYETRLGFFRAN---LPLFEAFQQPGR 117 Query: 140 DLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLV 199 L ++ A ++ + KK +L L P + +L+G + Y T Sbjct: 118 SLEQSFEAFNQNAINLVGADPKK--PDALNNYLRLEMQYPNGIDGVAILNGLVAYAITQQ 175 Query: 200 VKESLENVRNKLE---------------------------------IKTQFEKEKLAQDR 226 ++ +++ + +K K++L+ R Sbjct: 176 REQVGADLKVIVNNRLNELKGKIDAARANYETGKASKIARLLEADKVKRAQLKDELSALR 235 Query: 227 IKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNG--------------QAVKDDPDFSIS 272 ++ K Q + + L ++ IA + GI P + V + Sbjct: 236 LQMKMQRVSRLAELAEAISIAKSIGINSPTTPSAMGASAVRGAGQVMRTEVTNQKIPLYF 295 Query: 273 LGADGIERKLEIEKAVTDVAELNGELRNRQYLV--------------------------- 305 +G + +E + ++ N + + Sbjct: 296 MGTEALEAERTALAQRSNDDFTNNRVAEISKELRMLDVNREVEVLNSRKDEDIFLQGVEP 355 Query: 306 -----EQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR 360 +L ++ P+ P KA+I+ LS + G M+ L+R Sbjct: 356 LWAEEARLRGLSIDMSALKLVTVDRQAQEPLGPIKPKKALIIALSLMAGLMLGVLVALIR 415 Query: 361 YAMASRKQD 369 + R+++ Sbjct: 416 HFAQVRREN 424 >UniRef50_A4C8G6 OtnB protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C8G6_9GAMM Length = 308 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 69/349 (19%), Positives = 134/349 (38%), Gaps = 47/349 (13%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ 78 +A+ N+EI+L LIS LW+ K ++ +V + + + LP + S ++T + Q Sbjct: 4 VANKLNDEIELTQLISALWQGKILIVGLVILCSACSVFYALSLPNIYKSTVLLTAADESQ 63 Query: 79 WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 + K ++ L + L +L E ++S ++ + + D+ Sbjct: 64 NSGMSKLNSQFGGLAAMAGV------KLGSSGVDKSALALEIIKSHAFIAEFI-----DK 112 Query: 139 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 198 +L I+A + + K + W P E Sbjct: 113 NNLKPLIMAADNWDLGTNKVSYKPSVYNAESKVWVREAKIPRLPEP-------------- 158 Query: 199 VVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLN--YSLDIANAAGIKKPV 256 + E+ +F KE L+ + K N + +I ++ + DIA+ + Sbjct: 159 ----------SSQEVHEKFIKEHLSINSDKKSNLVSISIFHVSPYVAKDIADKL-VVAIN 207 Query: 257 YSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDV 316 + D+ + SI+ + + AV D+ ++ EL +Q + L A Sbjct: 208 AKIKKDDIDEANKSIAYLTSALGQ-----TAVADMQKIFYELIEQQEQTKMLANAR---- 258 Query: 317 NFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 + FK + KD P +AII I +++G ++ CG VL+RY + Sbjct: 259 DQYVFKVIDPAVVAELKDSPKRAIICIFGSVLGFLLGCGFVLIRYFLKK 307 >UniRef50_Q2LWK4 Hypothetical membrane protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LWK4_SYNAS Length = 342 Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats. Identities = 50/373 (13%), Positives = 110/373 (29%), Gaps = 47/373 (12%) Query: 9 GSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSA 68 + + YP +EI+LL+L V+W+ ++ + A+V A S + + + Sbjct: 2 TEPSPYYGYPPNGLEEDEINLLDLWRVIWKRRRFIGALVVAAVFLTAAASLFMTNVYQAK 61 Query: 69 AVVTP--PEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPY 126 AV+ P + + I + + + + +S L E+ + Sbjct: 62 AVIVPVTAKDGGGGGTLSALASQFGGLPGIALPGSASATEIVSLLKSNVLREKIVERYRL 121 Query: 127 VMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTA-PTSEEAQ 185 + E + ++ N + P +A Sbjct: 122 MPVLFYEQWDSGKKDWKREEGINLNPLGWLSNMAAAVQPTDAKAVSRQGEEGIPLLWDAL 181 Query: 186 TVLSGYID---YISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNY 242 +L + I + +++ +L K + D + + + A R Sbjct: 182 RLLDDMVKINHNIKEQTITLTVDYEDPELAAKMAGYFLETLTDHMTAEAKRVALTNRA-- 239 Query: 243 SLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQ 302 +E +L + A + + L +Q Sbjct: 240 ----------------------------------YLEAQL-AKTADPLIRQKIYNLIAQQ 264 Query: 303 YLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYA 362 +T+ N FK P +P KK P +A++V+LS ++ + Sbjct: 265 LETAMMTEVKEN----FAFKVIDPPRVPDKKIKPKRALMVMLSFVVALFLGVFSAFFLEY 320 Query: 363 MASRKQDAMMADH 375 + + A + Sbjct: 321 LEKIRNGAPGEER 333 >UniRef50_A7AKH2 Putative uncharacterized protein n=2 Tax=Parabacteroides RepID=A7AKH2_9PORP Length = 364 Score = 140 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 47/364 (12%), Positives = 122/364 (33%), Gaps = 30/364 (8%) Query: 16 DYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPE 75 + S +EIDL+ L LW+ ++ + AGL+I+F +P+++T+ + P Sbjct: 4 NNHTPSSPQSEIDLIALSGYLWKKRRFFIKCCGIATVAGLIIAFSIPKEFTTTVKLAPET 63 Query: 76 PVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAK 135 ++ + +D+ + S +L + + S+P++++ E Sbjct: 64 TDATSKMSNLGGLAAMAGIDLGSASG-------QDALSPNLYPDIVHSTPFLLELFPEKV 116 Query: 136 IDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 195 D+ + + S P + SF + E + + + Sbjct: 117 TDKEKKYTTTLYDYIAGHQRFAWWSILMKAPLKGIAALRSFFSGNEENDGDLNPFQLTHK 176 Query: 196 STLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANI-----------------Q 238 V+K + + ++ KTQ ++ + +I + Sbjct: 177 QEDVLKNLRQRITVYVDKKTQVVTLGVSMQDPLISADVAHSIVIKLQTYITHYRTQKAKK 236 Query: 239 RLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGEL 298 L ++ + + A +D + +I + + E + + Sbjct: 237 DLEFTEKVLKESRSAYYKAQQAYAAFEDGNKNII--SASYRTEQERLRNEMTLTFNVYNT 294 Query: 299 RNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVL 358 ++ ++L + ++P+K P K +I++ + + CG ++ Sbjct: 295 LAQKLEQDKLRVQE----QTPVYTIIEPATVPLKASSPKKLLILVAFIFLAFIGGCGYLI 350 Query: 359 LRYA 362 ++ Sbjct: 351 IKEY 354 >UniRef50_A6ASH0 OtnB protein n=10 Tax=Vibrio RepID=A6ASH0_VIBHA Length = 336 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 54/387 (13%), Positives = 129/387 (33%), Gaps = 66/387 (17%) Query: 1 MS-SLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISF 59 M+ + + + + L+ N +D+ ++ ++ K + V AF + + Sbjct: 1 MNMNQDKHPQVASPSSRFELSDDLNQSVDIREILKAIYSGKLYITFVTIAFCILSVFFAL 60 Query: 60 ILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL----DLDIKIDRTEAFNLFIKKFQSVS 115 P + + A+++P E L + + + +++ + L ++ QS Sbjct: 61 SRPDIYQADALLSPAENSSSSGLSQMAGQFGGIAALAGVNLNAGESSQTELAVQVMQSRK 120 Query: 116 LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVAL---SEKMKAVDDNASKKKDEPSLYTSW 172 +E ++ ++ + D I A + + + D+ + +PS ++ Sbjct: 121 FIESFINKHDLLIPIMAVNNWDIGSGSLNIDADIYNEDTKEWLRDSKGLRVAKPSTLEAY 180 Query: 173 TLSFTAPTSEEAQTVLSGY----IDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIK 228 + F + AQ SG ++Y S V KE ++ + + + + Sbjct: 181 EI-FIKDIFQVAQDKDSGLYRITVNYYSPYVAKEWVDWLVADINEVMRNRTIEETTK--- 236 Query: 229 TKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAV 288 + +L ++ + Sbjct: 237 ---------------------------------------------NLKYLSDQL-VKTPI 250 Query: 289 TDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALI 348 T++ +L Q L +A FK +P K P +++IVI+ + Sbjct: 251 TEMQSTFYKLIEEQTKSLMLAEAQEE----FVFKVVDPAVVPELKSKPKRSLIVIVGTFM 306 Query: 349 GGMVACGGVLLRYAMASRKQDAMMADH 375 G M+ VL+RYA+ + ++ + Sbjct: 307 GFMLGLALVLIRYAIVKNRSESSEINQ 333 >UniRef50_C4KCI7 Lipopolysaccharide biosynthesis protein n=1 Tax=Thauera sp. MZ1T RepID=C4KCI7_THASP Length = 407 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 54/396 (13%), Positives = 134/396 (33%), Gaps = 20/396 (5%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 M+ +++ + + ++EI LL+L VL + KK ++ + + + + Sbjct: 1 MNESTMQKAAIESPQGQMVVVEDDDEISLLDLAIVLAKFKKLILGLPVLVGALTVGATLL 60 Query: 61 LPQKWTSAAVVTPPEPVQ-WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEE 119 + +T+ + PP+ Q +L++ +S ++ + Sbjct: 61 MTPIFTATTAILPPQQSQSTASALLGQLGGLAGIAGAAAGIKNPSDLYVGMLKSRTVADA 120 Query: 120 YLRSSP---YVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 176 + Y D+ E L+ + A + + + + + + ++ Sbjct: 121 MIARFDLVNYYEDEFAEDARKSLENVSSFTAGKDGIITISVDDKDPELAAKMANAYVEEL 180 Query: 177 TAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEK--------EKLAQDRIK 228 T A T S + +V V ++E ++ E+ + A + Sbjct: 181 NRLTEVLAVTEASQKRLFFERQMVDARDRLVAAEIEARSAMERGGLASIDAQGQAMIEVT 240 Query: 229 TKNQLDANIQRLNYSLDIANAAGIK-KPVYSNGQAVKDDPDFSISLGADGIE------RK 281 + + +++ + A AA + + + + + + GA + Sbjct: 241 ARLRGQISVKEVEIGAMRAFAAEENPRLKAAQQELLALQTELARIEGASALRDTQVGGES 300 Query: 282 LEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTP-FKYQLSPSLPVKKDGPGKAI 340 + + + Q L +Q A + + + + + P +K P +A+ Sbjct: 301 SAAATNLQLLRNVKYYETLYQMLAQQFELAKIEEAKDSALIQVLDTAIPPERKSKPKRAL 360 Query: 341 IVILSALIGGMVACGGVLLRYAMASRKQDAMMADHL 376 IVIL+ L G VA ++ A +D A+ + Sbjct: 361 IVILAVLAAGFVAVLIAFMKEAAQRAAEDPESAERM 396 >UniRef50_C7M6P7 Lipopolysaccharide biosynthesis protein n=2 Tax=Capnocytophaga RepID=C7M6P7_CAPOD Length = 355 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 60/367 (16%), Positives = 136/367 (37%), Gaps = 28/367 (7%) Query: 15 PDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTP- 73 ++ +EIDLL LI+ LWRAKK++ F G+L++ +++T+ ++ P Sbjct: 3 NNHHNTIREEDEIDLLQLINKLWRAKKSITVFTLIFMVIGILVALFSAKEYTATTIMVPQ 62 Query: 74 PEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKE 133 + + ++L + K +SV ++ ++ D Sbjct: 63 ATDSKSTGGLGGLAAMAGINLGGNNADAIPLTTYSKIIESVPFKKKLAQTKLTFSDISNP 122 Query: 134 AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTV------ 187 ++ + A ++ + ++ + EPS+ T T+ + EE + Sbjct: 123 ITYEQYCKNYAKPSILGSVMSIFRSNP---SEPSIKVQDTTHITSISKEERAILNSIDNN 179 Query: 188 ----LSGYIDYIS-TLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNY 242 L+ YI+ + + E+L + + ++ K K + D QR Sbjct: 180 IKLNLNEKEGYITLSYAMPEALPAAQMLQSAQQLLQETVTEFKLQKAKEEFDFVQQRFIE 239 Query: 243 SLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQ 302 + A K+ + Q D L ++ + +L+ +A ++A +Q Sbjct: 240 AEKDFKA---KQYAVAGFQDRNRD------LFSNLPQTRLQQLQAEYNLAFNVYTELAKQ 290 Query: 303 YLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYA 362 +++ + F S+P ++ P + +I+ + +G ++ G V L+ Sbjct: 291 LETKRIKM----KEDQPIFTIIEPVSVPNERSKPKRMMIIAIWTFVGLIIGIGNVFLKDF 346 Query: 363 MASRKQD 369 K + Sbjct: 347 RQQLKSN 353 >UniRef50_B7AIQ3 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=B7AIQ3_9BACE Length = 371 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 54/393 (13%), Positives = 130/393 (33%), Gaps = 44/393 (11%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 MS NI++ + P EIDL+ L +W +K V A GL+++F Sbjct: 1 MSEENIQKTTQ--------QQPEEQEIDLIELAQKVWAERKLVFKACGIAALIGLVVAFS 52 Query: 61 LPQKWTSAAVVTPPEPVQWQ-ELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEE 119 +P+++++ + P + + + ++L +A S L + Sbjct: 53 IPKEYSTKVTLAPESAGKTSAGGMGALAAMAGINLGGASAGEDAL--------SPELYPD 104 Query: 120 YLRSSPYVMDQLKEAKIDELDL-HRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTA 178 ++S+P++++ D+ + A +K + + WTLS Sbjct: 105 IVKSTPFLLELFDVKVKDQKGKVDTTLYAYLDKYQRSSWMGAVVSAPFKALG-WTLSLFK 163 Query: 179 PTSEEAQTVLSGYIDYIST-LVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANI 237 E+ + + + + V + + + ++ KT ++ L + Sbjct: 164 DKPEKREGKIDPFHLTVDETRVAEALSKRILVTIDKKTGVTTLEVTMQDPLISASLTDTV 223 Query: 238 QR-----------------LNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIER 280 L ++ + A A D + +I L + Sbjct: 224 MHCLQNYITDYRTNKARHDLAFTEKLYKEAKADYEEAQKKYATFADANQNIILLS--YRA 281 Query: 281 KLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAI 340 + E K ++A + Q + + + + ++P++ P K + Sbjct: 282 EQERLKNEMELAYTVYTQVSGQLQMARAKVQEI----TPVYTVVQPATVPLRAAKPNKIM 337 Query: 341 IVILSALIGGMVACGGV-LLRYAMASRKQDAMM 372 I+I + G+ G + ++ ++ + Sbjct: 338 ILIGFVFLAGVGCVGWILFVKDLFKEWRKASKA 370 >UniRef50_O66795 Putative uncharacterized protein n=1 Tax=Aquifex aeolicus RepID=O66795_AQUAE Length = 433 Score = 134 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 58/388 (14%), Positives = 130/388 (33%), Gaps = 26/388 (6%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 M S ++ D +EIDL L VL + + ++ + F + FI Sbjct: 39 MISSMEEKSIDRKSEKLGYPMYEEDEIDLYELWVVLKKRFRVILLTLVIFIAGAVAYVFI 98 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 P + + AV+ P E + L L + + + +S +L E Sbjct: 99 APPVYKTEAVIFPIG----GEKTNLPSILEGLPVPLPSVADKVTVE--SVLKSRTLRERV 152 Query: 121 LRSSPYVMDQLKEAKIDELDLHR------AIVALSEKMKAVDDNASKKKDEPSLYTSWTL 174 + + K+ + + R I + + + ++D S ++ + ++++ Sbjct: 153 IEKLNLMPVLFKDLWDESRNTWRQDLEPEDIPTILDGAELLEDLISVSSNKKTGTITFSV 212 Query: 175 SFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLD 234 F A + ++ ++ ++S + KE L + ++ + L Sbjct: 213 EF-PEDPHMAYKIAQVSLEEAYKILNEKSWSLAKKHRIFLENQIKEVLNKQKVLEEVYLK 271 Query: 235 ANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAV-TDVAE 293 + + + I K + +D +ER + I K + ++ E Sbjct: 272 FIKGEIKEVPIVVDERFISKIFKESLNYENNDKFDIPGNLKQNLERNIPIAKGMNRNLPE 331 Query: 294 LNGELRNRQYLVEQLTKA-----------HVNDVNFTP-FKYQLSPSLPVKKDGPGKAII 341 + Q+ E L N+V + F+ P +P K P KA+I Sbjct: 332 YQFNYQKLQWQFEVLKNLLSTLFQQYQIAKANEVKESVSFQIIDPPYIPQKPAKPKKALI 391 Query: 342 VILSALIGGMVACGGVLLRYAMASRKQD 369 + +S + G + + + ++ Sbjct: 392 LAVSFVSGLFTGIFLAFFKEWLNNARKR 419 >UniRef50_Q5LEP2 Conserved hypothetical membrane protein n=13 Tax=Bacteroidales RepID=Q5LEP2_BACFN Length = 370 Score = 131 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 50/378 (13%), Positives = 122/378 (32%), Gaps = 38/378 (10%) Query: 16 DYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPE 75 + EIDL+ L +W +K V+ V GL+++F +P++++++ + P Sbjct: 8 NKTTPQSEEQEIDLIELAQKVWAGRKLVLKVCGVAVLVGLVVAFSIPKEYSTSVTLAPET 67 Query: 76 PV-QWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEA 134 + + ++L S L + + S+P++++ Sbjct: 68 GSKSSTGGRGALAAMAGINLGSSTGEDAL---------SPELYPDIVSSTPFLLEMFDVK 118 Query: 135 KIDELDL-HRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEA--QTVLSGY 191 D+ + + +K + + W +S EE + Y Sbjct: 119 VADQKGKINTTLYEYLDKYQRAPWWGAVASAPFKALG-WVVSLFKDAPEEQGDAKIDPFY 177 Query: 192 IDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQR------------ 239 + + + ++ KT + L + Sbjct: 178 LTADQAGIADALSHRISVSVDKKTGVTTLTVTMQDPLISAALTDTVMHCLQNYITDYRTN 237 Query: 240 -----LNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAEL 294 L ++ + N A A D + +I + + + E + ++A Sbjct: 238 KARHDLAFTEKLFNEAQENYYEAQQKYARFMDGNQNIIMQS--FRTEQERLQNEMNLA-- 293 Query: 295 NGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVAC 354 + + QL KA V ++ + ++P++ P K +I+I + G+ + Sbjct: 294 -YGVFTQVSQQLQLAKAKVQEI-TPVYTVVQPATVPLRPAKPNKIMILIGFVFLAGVGSI 351 Query: 355 GGV-LLRYAMASRKQDAM 371 G + ++ + K+ Sbjct: 352 GWILFVKDLLNGWKKQPE 369 >UniRef50_D0YWK9 O-antigen chain length determinant protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YWK9_LISDA Length = 352 Score = 130 bits (325), Expect = 9e-29, Method: Composition-based stats. Identities = 67/352 (19%), Positives = 143/352 (40%), Gaps = 18/352 (5%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQEL 82 +N+++LLN+ VLW K ++ L++S Q W S+A +T P+ + Sbjct: 10 QDNQLNLLNIFRVLWTRKLIIIISTIIGIVLALIVSIYSAQWWESSAEITKPQYSDYAVF 69 Query: 83 EKSFTKLRVL-----DLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQL-KEAKI 136 S +L L I+ + +N FI S + ++L+ S + ++ Sbjct: 70 ISSADQLTTGSNPSESLKSIINIEKNYNSFINILTSKTNKIDFLQQSNIIKSYFIRDGVK 129 Query: 137 DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 196 ++ +A+ +EK+ KK+ +S+ + A T +++ +L+ YI + Sbjct: 130 TDIQKDKALDLWAEKII------VKKESLILNKSSYIVIAQANTLDDSFKLLNNYIKFTK 183 Query: 197 TLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPV 256 + L ++ I+ K++L + T + Q+ +L+IA +GI+ P Sbjct: 184 NKYNSDVLLSLETFKRIELLNLKKQLDYNISYTLDIKKLKEQKAQLALNIAEESGIESP- 242 Query: 257 YSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDV 316 + F+I+LGA + + + ++ D+A N ++ + L ++++ Sbjct: 243 --LNNYFEKGSSFNIALGAKALRAEKNVISSLKDLAIFNDKITLLSSQLNYLNNVKLSNL 300 Query: 317 NFTP-FKYQLSPSLPVKKDGP-GKAIIVILSALIGGMVACGGVLLRYAMASR 366 F Y + K P K I++ S L + L+ + + Sbjct: 301 ENNAFFSYIQTEHKNPNKIAPSKKTFILVFSLLFACI-GIVIALVIEIFSKK 351 >UniRef50_A6F1J1 Chain length determinant protein n=1 Tax=Marinobacter algicola DG893 RepID=A6F1J1_9ALTE Length = 317 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 55/342 (16%), Positives = 115/342 (33%), Gaps = 54/342 (15%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQEL 82 S++EID+ L LW K ++ AFA G++ + P + ++ ++ P E L Sbjct: 17 SDDEIDIRELFFTLWAGKWIIIIATAAFAAGGVVYALSKPDIYQASVLLAPTEGSSGSGL 76 Query: 83 EKSFTKLRVL-DLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDL 141 L L + I D + + + QS + L +++ + + + + Sbjct: 77 SGQLGGLASLAGVSIGADASSKTVIAKEVLQSRAFLSDFISRHELAVPLMGTNGWNFRER 136 Query: 142 HRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVK 201 V + + + S+ T+W L V K Sbjct: 137 SWVF------NHKVYNADAAEWRNNSMPTNWDL------------------------VKK 166 Query: 202 ESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQ 261 ++V + ++ Q + R I + + S Sbjct: 167 LKEQHVSVSENEENGMVTVRVKSQSPVAAQQWATWLVR-----------DINEYMRSQDI 215 Query: 262 AVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPF 321 + ++ KL E +T + ++ +L R+ L A F Sbjct: 216 EEAEASI-------QYLKTKL-TETNITGMQQVFYQLIERETRTVMLANAQ----REYVF 263 Query: 322 KYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAM 363 K +P +K P +A+IV++++++GGM+ + R + Sbjct: 264 KTVDPAVVPQEKSQPKRALIVVVASMLGGMLGVVILFFRAFI 305 >UniRef50_B0KTY6 Lipopolysaccharide biosynthesis protein n=1 Tax=Pseudomonas putida GB-1 RepID=B0KTY6_PSEPG Length = 347 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 47/354 (13%), Positives = 117/354 (33%), Gaps = 17/354 (4%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQW 79 E+DL L +W K + + A L +F + + + P Sbjct: 5 QYRGGEEVDLGELFKSVWAQKVLIAGLTLALLLLAALYAFTRQPVYQADLAIVAPSHNDI 64 Query: 80 QELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDEL 139 + + L + I + + L+ + S + + + + + Sbjct: 65 SLINYGRGEATGLAV---ITVKDVYELYARHLYSENARRKVFEEIFFPSLSESQKAQPQN 121 Query: 140 DLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLV 199 L L K + +S + A + + + + Sbjct: 122 VLFTRFSRLF----------VISKTGDDAAARYVVSVSDSEPAAAVKLADALANTAAEMT 171 Query: 200 VKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSN 259 E ++N + ++ ++++ R + + + + +L +L IA + G++KP Sbjct: 172 KSELVKNALSDASMRAVMLDKEISGKREVARKEREDRLIKLKEALSIALSVGLRKPPIIT 231 Query: 260 GQA----VKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVND 315 G A + D D + G++ I ++ LR + + +N+ Sbjct: 232 GSASELSARMDGDLAYMRGSEAIRAEINNMAMRQSDDPYIANLRQLEERMAFYRDLKINE 291 Query: 316 VNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQD 369 F ++ ++P + P K +I++ ++G + L+R+ + +K Sbjct: 292 DAFRVYQRDGVLAVPDQPIKPRKVLIMLGGLVLGAGLGVFVALIRFFVRGKKAR 345 >UniRef50_C2M1S4 Putative uncharacterized protein n=1 Tax=Capnocytophaga gingivalis ATCC 33624 RepID=C2M1S4_CAPGI Length = 370 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 50/361 (13%), Positives = 115/361 (31%), Gaps = 10/361 (2%) Query: 22 PSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQE 81 ++EIDLL L+ + + KKT+ F G+ I+ +++T+ ++V E Sbjct: 6 QKDDEIDLLALLQKIVQGKKTIFKCFLVFFVIGVFIAIFSKKEYTATSLVLAQENNAAAG 65 Query: 82 LE-KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELD 140 L ++L + L+ QS+ L + +++ V E Sbjct: 66 GSLSGLASLAGINLSSGSSDLISPKLYTSIAQSIPFLRKMIQARIKVQQSNTPITYQEYY 125 Query: 141 LHR----AIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 196 + + + + K T + T E + Sbjct: 126 QKYDKGNFLDVIQKYTIGLPSLIVDKVTPSEENTPQYTTSEKDTLEVYPLTHEEKGLFGL 185 Query: 197 TLVVKESLENVRNKLEIKTQFEKEKLA--QDRIKTKNQLDANI--QRLNYSLDIANAAGI 252 + N ++ + ++ +A Q + KN L I + + Sbjct: 186 LKSQLKITNNDKDNTVSLSFSMEDPVAAAQMLEQAKNYLQETIIEFKTRKAKKQLEFIQK 245 Query: 253 KKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAH 312 + K + G+ + + + ++ N L +Q Sbjct: 246 QYEEAEKSFKEKQIRLAAFQDSNRGLITAVPMTRQSQLQSDYNLAYNLYVELAKQYENQK 305 Query: 313 VN-DVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAM 371 + + F S+P++K P K +I+ + + +G ++ G + + M + K + Sbjct: 306 IKVQEDTPAFITIEPVSIPLEKSKPKKGMIIAIWSFLGIVIGIGTIFAKDFMKAMKNRSA 365 Query: 372 M 372 + Sbjct: 366 V 366 >UniRef50_C1TR41 Uncharacterized protein involved in exopolysaccharide biosynthesis n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TR41_9BACT Length = 435 Score = 128 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 50/399 (12%), Positives = 129/399 (32%), Gaps = 65/399 (16%) Query: 38 RAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIK 97 R K ++ F FA + + + + + V PP+ + ++ V D Sbjct: 29 RRKWFIIKTTFIFAVLAIAYALLATPIYRAETQVIPPQSGSGA--MAALAQMGVPDFAAG 86 Query: 98 -IDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVD 156 + T + + +S +L++ + + + + + + I L EK+ Sbjct: 87 MLGVTTPSDTLVAIVKSRPVLDKVIDKFGLMDREPEPGPLPVEAIKEGINTLKEKLLPSK 146 Query: 157 DNASKKKDE------------------PSLYTSWTLSFTAPTSEEAQTVLSGYID----- 193 ++AS+++ + T+S + + + A + + Y+ Sbjct: 147 ESASEEEKPKFRSDIRRGLANATSATADTKSGIITISVSDTSPDLAAEIANEYVAQLQEL 206 Query: 194 --------------YISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQ- 238 ++ V ++ + + + + +T ++ I+ Sbjct: 207 MQSLAFSQASQQRLFLEDQVKDAQYNLLQAERNLSEYQIRTGILDVGEQTSAVMEGLIKL 266 Query: 239 -----------RLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGA---------DGI 278 R + AN +K+ + S G+ D Sbjct: 267 RAEVTAKEVELRSTQTFATANNPKVKRLQSELASLKEQLKRMEASTGSTMPSDISIKDLP 326 Query: 279 ERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFT-PFKYQLSPSLPVKKDGPG 337 + LE + + D+ L++Q A +++ + P ++ P Sbjct: 327 DAGLEYLRLMRDM---KFNETLYGMLLKQYESARISEAQEPSVVQVLAQAEPPERRSKPK 383 Query: 338 KAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADHL 376 + +IV+L+ ++GG + G L+ A+ + D + + Sbjct: 384 RKLIVVLATVLGGFIGVFGAFLKEFAANAQSDPERSAKM 422 >UniRef50_Q1YPV1 OtnB protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YPV1_9GAMM Length = 312 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 64/361 (17%), Positives = 131/361 (36%), Gaps = 58/361 (16%) Query: 15 PDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPP 74 P ++EIDL L SVLW KK ++AV FA ++ + L ++ ++AVV+P Sbjct: 3 NQIQTPQPYDDEIDLRELFSVLWAGKKLIVAVTAVFAVVSVIYALSLANQYKASAVVSPA 62 Query: 75 EP--VQWQELEKSFTKLRVL-DLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSS----PYV 127 + L L ++I + ++ QS +E ++++ P Sbjct: 63 HSGGSSLGAMAGQLGGLASLAGINIGSGESNETQEAMEIMQSWGFIEAFIQTHALQVPVY 122 Query: 128 MDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTV 187 + + L L + + K ++D+AS + PS + Sbjct: 123 AATGWDKGSNSLKLDDDLYDAASKRWLIEDSASGENRAPSSW------------------ 164 Query: 188 LSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIA 247 +N ++++ + + + YS IA Sbjct: 165 --------------ALYQNFKSRVAVSQDKKSGLINVSVEY-------------YSPQIA 197 Query: 248 NAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQ 307 + + + ++ ++ + + ++E + A+ D+ E+ +L Q + Sbjct: 198 KQW-VDLFISTINDYMRARKLEQVNRNIEYLTVQIE-KTAIADMREVFYQLIEEQTKSKM 255 Query: 308 LTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRK 367 L +A F +P +K P +A + IL L+GGM++ VL+R S+ Sbjct: 256 LAEASPE----YAFVTVSRAMVPEQKSQPKRARVCILGTLLGGMLSVLWVLVRRYAFSKA 311 Query: 368 Q 368 Sbjct: 312 N 312 >UniRef50_B5JNI6 Chain length determinant protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNI6_9BACT Length = 333 Score = 127 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 43/375 (11%), Positives = 103/375 (27%), Gaps = 67/375 (17%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 M+ +N S +P YP +E+ L++L +++W+ K + F G+ + Sbjct: 1 MNEVNP---SPQPYPPYPYYPQEEDELSLIDLWNIVWKRKWPWLVFGPLFGIFGVFYALN 57 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDI---KIDRTEAFNLFIKKFQSVSLL 117 + + + A + P + + + + + I +S L Sbjct: 58 QTEIYRAEATLAPNSEEKSGGGLSALAGQFGGLASMAGLNLGGGGSTETAIATLKSRQFL 117 Query: 118 EEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFT 177 ++ + + + +E Sbjct: 118 TPFITTETSLKALFPKEWDEETKAWTVAKERRN--------------------------D 151 Query: 178 APTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANI 237 + T + L Y + +++ + K+ + K + + Sbjct: 152 SNTPTD----LEAYEFFTK--------NSLKVSEDKKSGLVTLAVELPDPKLAAEWTNQL 199 Query: 238 QRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGE 297 V ++ + +L + V ++ E Sbjct: 200 ------------------VGKLNSHLRQQAKIESERNLAYLNDQLSDTR-VLEIREALYG 240 Query: 298 LRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGV 357 L Q L A FK +P + P +++IVI S ++GG Sbjct: 241 LIENQTKNAMLANAKEE----YAFKVIDPAVVPELRVRPKRSLIVIASGMLGGFFGLFLC 296 Query: 358 LLRYAMASRKQDAMM 372 + + + + K+ Sbjct: 297 FVFHFVDTAKKTKPS 311 >UniRef50_C9PY96 Chain length determinant protein n=1 Tax=Prevotella sp. oral taxon 472 str. F0295 RepID=C9PY96_9BACT Length = 350 Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 52/356 (14%), Positives = 126/356 (35%), Gaps = 15/356 (4%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ 78 + + + ++IDL+ + LW+ K+ G +++F +P+ + + ++ P Sbjct: 1 MENNTKDKIDLVAITKTLWKNKRLFGLSCGVAFVIGAVVAFSIPKTYQTKVILAPEVSSG 60 Query: 79 WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 E ++ +++ + ++ + + + +L S V + K+ E Sbjct: 61 SSMSESLSDIASMMGVNLGKGGSSVDAIYPEIYPQIIKSTPFLTSMFNVKVTSLDGKVKE 120 Query: 139 LDLHRAIVALSE--KMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 196 + L+ +++ + ++ L +EE + +L + I+ Sbjct: 121 MPLYNYLLSYQKMPWWDSILQGIIGLFSSKGLAGREVKVNNFHLTEEQEGILHQVENMIT 180 Query: 197 TLVVKE-----SLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAG 251 V K+ ++ L + + + + T + L YS + + A Sbjct: 181 CNVDKKTNIITISVTAQDALISASLADTVQTKMQQYVTNYRTKKARNDLAYSQKLFSEAK 240 Query: 252 IKKP-VYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTK 310 + D I + +LE E +L + N+ Q+ + Sbjct: 241 AQYIKAQQMFGHYSDANTDLILQSFKAKQDELENE------MQLRYNIYNQTSQQMQMAR 294 Query: 311 AHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASR 366 A V + F ++P+KKDGP + IV+ ++ VL++ A + Sbjct: 295 AKVQE-RTPAFTQIQPATVPLKKDGPKRMTIVLAFMFFAFVLTSIHVLIQDAKKNN 349 >UniRef50_C1F864 Chain length determinant protein domain protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F864_ACIC5 Length = 411 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 55/399 (13%), Positives = 120/399 (30%), Gaps = 36/399 (9%) Query: 10 SDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAA 69 + +EI LL+L++ L R K + + G+L++F+LP+K+T+ Sbjct: 3 ESTNATHVTEKPQQEDEISLLDLLAALGRKKHIAIRTIAVMLVIGILLAFLLPKKFTAEV 62 Query: 70 VVTPPEPVQWQELE--------KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYL 121 + PP+ + L L +K +F + +++ +Y Sbjct: 63 TLLPPQQQSSLSSMLSSQLGGLGAVASLAGGGLGLKNPNDRYIAMFKSQTVEDAMIRKYG 122 Query: 122 RSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTS 181 + Y + A+ + + + + L + F + Sbjct: 123 LMAEYHAKLMSAARKAFEGHVKLDGTTKDGLIHISVTDRSPARAAELANGYVEQFRKLSE 182 Query: 182 EEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKN---------- 231 A + S + + + + + EK + Q + + Sbjct: 183 HLAISEASQRRLFYQQQMAEAKSNLTNAEEALVKTEEKSGMIQVGSQAEALIQSGAQLRA 242 Query: 232 ---QLDANIQRLNY-------SLDIANA--AGIKKPVYSNGQAVKDDPDFSISLGADGIE 279 + IQ L +L A AG++ + + + D I Sbjct: 243 QIAAKEVEIQGLQAFAAPGNPNLLQAQQELAGLRAQLAKLAGSGGNTKDQLIVPQGKLPV 302 Query: 280 RKLEIEKAVTDVA--ELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPG 337 L+ + DV + + +QY + ++ +A + + P K P Sbjct: 303 AGLDYLRKYRDVTYYQTIFNVLAQQYELAKIDEAKEGAL----IQVVDPAIPPDHKSAPK 358 Query: 338 KAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADHL 376 + +I+ G + LL QD + Sbjct: 359 RLLILAGCLFAGIFLGVMLALLAEGWDHLNQDPHGRQQI 397 >UniRef50_P44063 Uncharacterized protein HI0866 n=7 Tax=Haemophilus influenzae RepID=Y866_HAEIN Length = 207 Score = 125 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 92/205 (44%), Gaps = 3/205 (1%) Query: 169 YTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIK 228 + ++F+A T + AQ+VL+ Y++++S + ++ + + ++ + Q Sbjct: 3 KIALKITFSAETPKYAQSVLTEYVNFVSQYSLNQTNQEFKQGFNLRLDELRFSKEQIEEN 62 Query: 229 TKNQLDANIQRLNYSLDIANAAGIKKPVYSNG--QAVKDDPDFSISLGADGIERKLEIEK 286 + ++ L +LDIA AGIK N + D + L ++ +L+I K Sbjct: 63 LTEEKKVQVENLTNALDIAKKAGIKDFSRGNNISDSKLADGTYLFILAEKYLQAQLDIAK 122 Query: 287 AVTDVAELNGELRNRQY-LVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILS 345 V N + +RQ + +L + + Y SP PV KD P +++I+ + Sbjct: 123 NTPVVYPANYYITDRQLFKLNKLASQLELVEDVKTYYYLSSPDYPVVKDNPKRSLILAIG 182 Query: 346 ALIGGMVACGGVLLRYAMASRKQDA 370 +IG ++ +LL + + K+ + Sbjct: 183 FIIGILLPTFFILLGSVIQTNKKQS 207 >UniRef50_Q21IT7 Lipopolysaccharide biosynthesis n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21IT7_SACD2 Length = 340 Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 45/351 (12%), Positives = 111/351 (31%), Gaps = 59/351 (16%) Query: 22 PSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQE 81 + + L L +W K ++A+ F+ + L + LP + S V+ P + Sbjct: 32 SQYDGVTLGELWGAIWGGKFLIIAITAFFSISALFYALSLPNMYKSTLVLAPAQAEGKGG 91 Query: 82 LEKSFTKLRVL----DLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKID 137 + + L +++ + I+ +S LE ++ + D Sbjct: 92 MGALAAQYGGLAAMAGINLGGGDSARIKQAIELIKSWPFLESFISKYNLKSQIMAVQGWD 151 Query: 138 ELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL--SFTAPTSEEAQTVLSGYIDYI 195 + + EPS ++++ + S + +++ +L+ +++ Sbjct: 152 RKTAKLIYDYDTYNPVTNAWMLGEGAGEPSSWSTYRVLSSMLSVSNDATTGMLNLSVEHY 211 Query: 196 STLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKP 255 S V + + + ++ Q + DI +A Sbjct: 212 SPEVAYKWVNLLLLEINSFYQQQ--------------------------DIRDAQK---- 241 Query: 256 VYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVND 315 D + K+ E ++++ + + Q L + Sbjct: 242 ------------------NIDYLNAKI-AETNISEMKSVFYSMIESQTKTLMLAEVS--- 279 Query: 316 VNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASR 366 + K + + ++ P + +I +L + GG+V VLL Y + Sbjct: 280 -DQYLVKSVVPAKVAEQRSKPNRVLICVLGVMFGGLVGFILVLLLYFSKNH 329 >UniRef50_C6MYW2 Putative Wzz n=1 Tax=Legionella drancourtii LLAP12 RepID=C6MYW2_9GAMM Length = 344 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 40/327 (12%), Positives = 106/327 (32%), Gaps = 25/327 (7%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQEL 82 SN EI L+ L + ++ K+ ++ G + F + +A VT Sbjct: 6 SNTEISLIELFHLFYQKKRVLVLTTLLGLALGFAVVFFSKPVYEAAIKVTAASEGDIAAF 65 Query: 83 EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLH 142 + + + + +F + S + + + + + L + ++ Sbjct: 66 N--LGRSWNKSALKPMSAADIYLIFNNELLSETAKKAFFNQ--FYLSSLSLQQKEKYSSA 121 Query: 143 RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKE 202 + + ++ ++ +T++ ++ L ++ + + + Sbjct: 122 HLYASFIKNFAIIEHPKGV----SEAFSKFTIAIRGDNPQQVTIWLKQFLHVVQAQTLTK 177 Query: 203 SLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQA 262 L N++ + + ++++ + R K + I +L ++ IA A Sbjct: 178 ILNNIKQQNSVLVYNLQQQIDRARETAKVERHDRITQLKETMRIAQLA-----------R 226 Query: 263 VKDDPDFSISLGADG------IERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDV 316 +D F +L + +++ A +LR Q ++ VN Sbjct: 227 QNEDDLFDSALNTKYPPNPALLRAEIKNLSARKSDDAFIPKLRTLQAELDFYKSLAVNRN 286 Query: 317 NFTPFKYQLSPSLPVKKDGPGKAIIVI 343 F + P P K +I++ Sbjct: 287 QVAVFHLDGAIETPNTPISPKKRLIMM 313 >UniRef50_B9ZNL2 Lipopolysaccharide biosynthesis protein n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZNL2_9GAMM Length = 371 Score = 123 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 49/385 (12%), Positives = 128/385 (33%), Gaps = 37/385 (9%) Query: 1 MSSLNIKQGSDAHF----PDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLL 56 MS+ + S+ PD S ++EI L++L +VL R K + AV A G L Sbjct: 1 MSTKDSSPTSETRTSGDRPDPGNHSRYDDEISLVDLWNVLSRRKWWIAAVTIAVLLLGTL 60 Query: 57 ISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL 116 F+ ++ + + + +E + L+ + + + Sbjct: 61 YGFLKTPSYSFQTTIQLGQDDRGNPVEDPNVTVTFLNNVLIPGIWRDLLADSPETRPPEA 120 Query: 117 LEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 176 Y+ + YV + + + + ++ + Sbjct: 121 SARYVDGTEYVHLTTSAPMDRKEAVEQLHTLTTRALR----------------QNHVQHI 164 Query: 177 TAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDAN 236 +E A + + + +++ ++ + E K + + + + Sbjct: 165 DDIRAELADQRREQELQHAAQ--LEQLQGDLDSITEHKERATSRLELLTEERALLEEQID 222 Query: 237 -IQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGAD-GIERKL-----EIEKAVT 289 + L LD A A + + + A+ + +L E+E+ ++ Sbjct: 223 GLHPLREQLD-AALADTDQSAAPLWSMMPLTSIVDMRYSAERRLRTELPDHVQEVEQRLS 281 Query: 290 DVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLS-------PSLPVKKDGPGKAIIV 342 ++ + + ++ + + + ++ + + + +GPG+++ V Sbjct: 282 ELESSSERIASQMEREQSRHEIAMAALDRREQRVRETVARGSDYALASNTPEGPGRSLFV 341 Query: 343 ILSALIGGMVACGGVLLRYAMASRK 367 LS ++G M+ G R +A+ + Sbjct: 342 ALSLILGLMLGVFGAFFREFLANVR 366 >UniRef50_A4SDR7 Lipopolysaccharide biosynthesis protein n=2 Tax=Chlorobium/Pelodictyon group RepID=A4SDR7_PROVI Length = 343 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 55/377 (14%), Positives = 116/377 (30%), Gaps = 44/377 (11%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 M+ + S + +EI LL+L L + KK ++ FA A + + Sbjct: 1 MAESILPTQSRQPA----MQDGYEDEISLLDLAITLAKYKKLIIGAPFAIAVLVSIYTLF 56 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 P +T+ + PP+ S + + ++ +S L Sbjct: 57 QPNIYTADTRILPPQQQSNASAMLSQLGALGALGGGSLGIKNPNDTYVAMLESRPLQNSM 116 Query: 121 LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT 180 ++ E D + ++ + T+S Sbjct: 117 IKRFKLQAVYEAETLADARKTLEGVTTVTTGKDGL----------------ITVSVDDQD 160 Query: 181 SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 A T+ +GYID + L+ ++ + + + K +L L Sbjct: 161 PIRAATLANGYIDELQKLMQVFAVTDA--------SQRRIFFEKQLHLAKEELADAEVSL 212 Query: 241 NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN 300 + G+ + GQ + I + + V ++ Sbjct: 213 K---QLQQRTGVLQLAAQAGQLMGTGQAPDI------------ALRYIRKVRDMKYAETL 257 Query: 301 RQYLVEQLTKAHVNDVNF-TPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLL 359 + L +Q A +++ T + +P K P ++ IV+++AL G +A + Sbjct: 258 YEILAKQYEMAKLDESKESTVIQVLEKAVVPQDKSKPQRSKIVLIAALATGFLAILYAFI 317 Query: 360 RYAMASRKQDAMMADHL 376 A+ K+D + Sbjct: 318 AEALNKAKEDEEQEAQI 334 >UniRef50_A3JJA1 Lipopolysaccharide biosynthesis n=1 Tax=Marinobacter sp. ELB17 RepID=A3JJA1_9ALTE Length = 378 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 62/379 (16%), Positives = 144/379 (37%), Gaps = 44/379 (11%) Query: 22 PSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQE 81 P ++EIDL + +W + V+ +V + ++ + P+ + + ++ + + Sbjct: 7 PYDDEIDLFEIFETVWDGRWRVIGIVILAVLISIAVNVLKPELYNGSTALSKAPSSSFIK 66 Query: 82 LEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDL 141 L+ I F++F+ +F + + L S Y+ +L I+ D Sbjct: 67 YSSVNETLQQSGFSYAISSQSVFDMFVTEFADYDEVVKILEKSDYIKQRL--QAIEIEDR 124 Query: 142 HRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVK 201 + +V +++ + + W+L + S E++ + + I+ + V + Sbjct: 125 NDFLVYMAKNFEIL--------PPSENGNHWSLDYEWRDSNESKKIFTQSIEDVLANVRQ 176 Query: 202 ESL---ENVRNKLEIKTQFEKEKLAQDRIKTKN----QLDANIQRLNYSLDIANAAGIKK 254 L + + + I+ + +K++L D + ++ L + LN IA G++K Sbjct: 177 TILSDIDELARTVSIRNKNKKQRLNADLVALEDAINLDLAKRLLYLNEQTAIAKELGVEK 236 Query: 255 PVYSNGQAVKDDP-----------DFSISLGADGIERKLEIE--KAVTDVAELNGELRNR 301 + + G I++++++ ++ D +N + Sbjct: 237 NSLNGNGLFQSQNTGVSLSVTSSDIPFYLRGFKAIDKEIDLLFSRSKEDRLAINNTYVSI 296 Query: 302 QYLVEQL-----------TKAHVNDVNFTP-FKYQLSPSLPVKKDGPGKAIIVILSALIG 349 + + + K V D + T Y LS + + P + IL+A++G Sbjct: 297 KTQLSSIHNDVSMQQIMSAKGSVADDDVTSWLAYDLSLATTSSQSKP--VLYAILAAMLG 354 Query: 350 GMVACGGVLLRYAMASRKQ 368 MV VL+ A+ RK Sbjct: 355 LMVGVFNVLVSSAVRKRKS 373 >UniRef50_B3C5C8 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3C5C8_9BACE Length = 380 Score = 121 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 56/391 (14%), Positives = 120/391 (30%), Gaps = 29/391 (7%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 M+S I + D P S EI+LL L+ +W ++K ++ + A GL+I F Sbjct: 1 MNSNTINERKDMRPP-----SSQEQEINLLELVKKVWDSRKLILRMCGIGAIVGLVIGFS 55 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAF--NLFIKKFQSVSLLE 118 P+++T++ ++ P + +A L+ + S L Sbjct: 56 TPKEYTASTLIAPESRRAYPGKSALVNMEDDNLSSSITGEKDAIFPVLYPEIINSTPFLI 115 Query: 119 EYL-----RSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT 173 V L + + + S K S KDE + + T Sbjct: 116 RLFDIKVREQKDSVSIPLSQYLKERQKAPWWRIITSVPFKLTGWIVSLFKDESNEDSGQT 175 Query: 174 LSFTAPTSEEAQTVLSGYIDYISTLVVKESLEN---------VRNKLEIKTQFEKEKLAQ 224 + +G I++ + + +++ L T + ++ Sbjct: 176 GTKMGINPFRLTRKEAGMAGAIASRINIGVDKKKRTITIFVTMQDPLVAATVADIVRVYL 235 Query: 225 DRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQA-VKDDPDFSISLGADGIERKLE 283 T+ + + L Y+ ++ A + D + L + +L Sbjct: 236 KEYITEYRTGKARKFLKYTEELRKEAQEEYYSAQEKYTRYADVNRGLVKLTS---RAELV 292 Query: 284 IEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVI 343 + +A+ + + + +P+K P K I++ Sbjct: 293 RLRNEMKLAQTTYNQTKQLVQAAMARVEKIR----PVYAVIQPVVVPLKPSKPRKMTILV 348 Query: 344 LSALIGGMVACGGVLLRYAMASRKQDAMMAD 374 + + G + VL + +AD Sbjct: 349 MYVFLSGAGSLVWVLFAKGFLKDLKKRRVAD 379 >UniRef50_B1XZS2 Lipopolysaccharide biosynthesis protein n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XZS2_LEPCP Length = 398 Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats. Identities = 48/387 (12%), Positives = 133/387 (34%), Gaps = 21/387 (5%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 MS + + G+D + ++ E+ L++++ +L R K ++ CA L +S++ Sbjct: 1 MSQITQQTGADTKTGNVISDMNASEELSLIDVLLILSRRKLLLVVAPLLVGCAALGMSYL 60 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL--DLDIKIDRTEAFNLFIKKFQSVSLLE 118 + +T++ + PP+ Q L + L + +I +S ++++ Sbjct: 61 VRPTYTASVQLLPPQQQQSGALTALLGAAGGMASALGGISGLKNPSDQWIGMLKSRAIVD 120 Query: 119 EYLRSSPY---VMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 175 + + + + L+ + IVA + + ++ + + + T++ Sbjct: 121 AIVNEFSLREIYEVEYQFKARERLEKNSRIVAGKDGLIDIEVDDHDPERAAKIATAYVDE 180 Query: 176 FTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDA 235 A T + + + + ++ ++ + + +KT + Sbjct: 181 LQNLMRTLAVTEAAQRRLFFEKQLSDTKTKLIKAEI----LLTEGGINTGVLKTNPEAAV 236 Query: 236 NIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGA-----------DGIERKLEI 284 + + A + S + + + L + + K Sbjct: 237 SQLAQAQAAVTAQEVKVSVMRESMTNSNPQLRNAILELASLREQLHRSNRDEPERAKGSG 296 Query: 285 EKAVTDVAELNGELRNRQYLVEQLTKAHVND-VNFTPFKYQLSPSLPVKKDGPGKAIIVI 343 + VT + Q A ++ + + + +P K GP + +I + Sbjct: 297 AEYVTRFRDFKYYETLFDLFARQYEMARADEARDGSVIQVIDPAQVPEYKSGPKRGMIAV 356 Query: 344 LSALIGGMVACGGVLLRYAMASRKQDA 370 L+ ++ +++ VL +A+ A Sbjct: 357 LATILTFILSVLYVLASHALRGYTTRA 383 >UniRef50_D0WWA9 Putative uncharacterized protein n=3 Tax=Vibrio harveyi group RepID=D0WWA9_VIBAL Length = 300 Score = 120 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 66/342 (19%), Positives = 126/342 (36%), Gaps = 49/342 (14%) Query: 26 EIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKS 85 E+D+ LI LW+ K ++A+ F FA A +L + P + S AV+ P Sbjct: 7 ELDIGELIRSLWQQKIMIVAITFVFAVASVLFAMSKPNLYKSEAVLFPVADNTPSSAMGQ 66 Query: 86 FTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAI 145 L L ++ + ++ +S + L ++ ++ + Sbjct: 67 LGGLAAL-AGFGSQKSSKQAIALESLRSRAFLGAFIERRNILIPLMA------------- 112 Query: 146 VALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLE 205 ++ D + K +P +Y T ++T SE + Sbjct: 113 ------IEHWDATSGKVYIDPKIYDESTDTWTRVVSEG---------------------K 145 Query: 206 NVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKD 265 + + T+ E L D KT ++ N S D+A + + + +K+ Sbjct: 146 TPKPTILEATKVLNELLVIDSNKTSGSTIVSL--TNQSPDLAKQW-LDWLISDLNEWMKN 202 Query: 266 DPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQL 325 +E++L ++++ + +L Q L +A N F Sbjct: 203 KDINQAKNNIQYLEKQL-NLTNLSEMQNVFYQLVEEQTKKLMLAEAQEN----YIFDIID 257 Query: 326 SPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRK 367 P +P +KD P +AII +L LIGG++A L R A++ + Sbjct: 258 PPVVPEEKDSPSRAIICVLGTLIGGVLAMVIALFRIALSRKH 299 >UniRef50_C5V7I4 Lipopolysaccharide biosynthesis protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V7I4_9PROT Length = 343 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 44/358 (12%), Positives = 118/358 (32%), Gaps = 38/358 (10%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQW 79 + ++EI+L++L+ V+ + + ++ + A ++ + + P +T+ V+ PP+ Sbjct: 12 QAVQDDEINLMDLLLVIAKHNRFIIKLTLGAAVLAVIYALMQPNIYTAKTVLMPPQQPSS 71 Query: 80 QELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDEL 139 + + + L L+S +K K+ EL Sbjct: 72 STSVLLGQLGGLAGMAGGALGVK---------NPSDLYAGMLKSHMIEDALIKRFKLMEL 122 Query: 140 DLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLV 199 + + + ++ A+ K T+ ++ + A + + Y++ + +LV Sbjct: 123 YQAKTMEPVRAALEGSTVVAAGKD------GFITVEYSDKDPKLAAAIANAYVEELDSLV 176 Query: 200 VKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSN 259 ++ + ++L A ++ V+ + Sbjct: 177 RTQAARE----------------------ALGRKQFYEKQLADVRAGLGRAELEMKVFQD 214 Query: 260 GQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVN-F 318 V + + V ++ + +Q+T A ++ Sbjct: 215 QNRVFQLGGGAGVALGASGGIPKAELEYVRIARDVKYNEMLLAAMAQQVTSATIDAAKNL 274 Query: 319 TPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADHL 376 + +P KK P +A+IV+L+ ++ + +R A Q+ + + Sbjct: 275 PTLQVLDKALVPEKKSKPKRAMIVMLATILAFFIGIIWAFVREAGERSGQNPEQNERM 332 >UniRef50_C4K3Z7 Regulator of length of O-antigen component of lipopolysaccharide chains n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K3Z7_HAMD5 Length = 308 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 75/347 (21%), Positives = 146/347 (42%), Gaps = 67/347 (19%) Query: 22 PSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQE 81 PS +EIDL++L+++ ++ K + + F LI + LP+KWTS A++T + Q Q Sbjct: 28 PSTDEIDLIDLLAIFFKNKVKIFFITIFFVIVSALICYKLPEKWTSKAIITYIDDNQLQP 87 Query: 82 LEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDL 141 E KL++ D+ + D+ +LFI+ F S L E+YL ++ Y +K+ + Sbjct: 88 FELLSYKLKLFDISLNFDQKNLLSLFIQLFNSNVLKEKYLVNTSYFQKLIKDHPENRNQF 147 Query: 142 HRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVK 201 I+ K ++ + S K+++ Y +TLS++A T+++ Sbjct: 148 MLDII----KNIHIEYSKSNKENDFKGYVFYTLSYSADTAKD------------------ 185 Query: 202 ESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQ 261 + +L+ I + + + + G Sbjct: 186 ------------AQNLLNGYINYISAIFDEKLNNKITNKINI----KKSVLSFIIDNKGM 229 Query: 262 AVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPF 321 ++ DD + ++ + +E+L ++D+ PF Sbjct: 230 SINDDVNLPMA-----------------------------KLQLEKLQSIKLSDIKIIPF 260 Query: 322 KYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQ 368 +Y P+ PVKKD P A I++LS + G MV+ VL+++ ++ R + Sbjct: 261 EYLQKPNEPVKKDSPQSAFIILLSGMAGLMVSMFYVLVQHYLSQRNK 307 >UniRef50_B3E8V9 Lipopolysaccharide biosynthesis protein n=4 Tax=Desulfuromonadales RepID=B3E8V9_GEOLS Length = 422 Score = 115 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 55/408 (13%), Positives = 130/408 (31%), Gaps = 59/408 (14%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 MS + H YP+ EI+LL+L+ VL + + ++ V F A +I+ Sbjct: 1 MSQTDPPPKKSIHTTPYPV----EGEINLLDLLLVLAKRWRMIIGVPFVVAAITAIITLF 56 Query: 61 LPQKWTSAAVVTPPEPVQ--WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLE 118 +P +T+ ++ P E L L + + +L++ +S ++ + Sbjct: 57 MPNIYTAKTMIIPSEDSSSGMGALMAQLGGLVTM-AGGPLGGKTTADLYVTMLKSETVKD 115 Query: 119 EYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTA 178 + D+ L A + + + + T+SF+ Sbjct: 116 PII---------------DKFKLMEKYEAKLRSNVYLTLDGATAINLGKKDGVITVSFSD 160 Query: 179 PTSEEAQTVLSGYIDYI--------------STLVVKESLENVRNKLEIKTQFEKE-KLA 223 + A + + Y+D + + +++ + + L + K + Sbjct: 161 EDPKLAAAIANEYVDQLGKLSAQLNMTGATNNRRFLEKQITETKADLSKAEEELKIFQSK 220 Query: 224 QDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLE 283 I +Q A I+ + ++ S+ + ++ Sbjct: 221 NKSISVPDQAKATIEGVAQLRAQLAVKEVELGTLQRQFTDNSQEVKSVKAAVAQLRGQIA 280 Query: 284 IEKAVTDVAELNGEL----RNRQYLVEQLTKAHVNDV------------------NFTPF 321 + + + +L + Q + + + + + + PF Sbjct: 281 SLEGKGNSSSAIPQLGAVPQLGQDYLRLMREFKIQEAVLEMLTKQYEMAQVSEAKDTAPF 340 Query: 322 KYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQD 369 + +P +K P +A IVIL+A G + L + + + Sbjct: 341 QLLEKAKVPERKSKPKRAQIVILAAFATGFLMVLLAFLLNFVEQMRPE 388 >UniRef50_A4BIX4 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BIX4_9GAMM Length = 360 Score = 115 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 58/361 (16%), Positives = 132/361 (36%), Gaps = 28/361 (7%) Query: 21 SPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQ 80 N+EIDL LI L ++ + F A G++++ +LP+++ AV P Sbjct: 12 PHDNDEIDLGQLIKQLIAQWPLIVGITFLGAVVGVVVALMLPKQYRVEAVFDKPSTTHLS 71 Query: 81 ELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELD 140 L + R + F+K ++ +L+E L S ++D +A E Sbjct: 72 SLISQPFV--------DLSRQQLLEDFLKNLKTPNLIESVLDSHGLMVDNDGKALSAEKR 123 Query: 141 LHRAIVALSEKMKAVDDNASKK--KDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 198 + A + + +DE ++S + AQT+++G ++ S Sbjct: 124 YSLVLRMSQALRVAPVEYDFIQTLQDETPTIDQISVSLLSSEPAIAQTLINGLLEAASAK 183 Query: 199 VVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYS 258 + ++L ++ +I + L Q + Q ++ RL +LD+A I +P Sbjct: 184 TLADTLSDIEGAKQIALSQLQADLNQLKEAALAQKQEHLLRLRSALDVAQELNITEPTDW 243 Query: 259 NGQAVKDDPDFSISLGADGIERKLEIEKA-VTDVAELNGEL------RNRQYLVEQLTKA 311 + G + +++ ++ +++ + + Q Sbjct: 244 EASQGE-----LYLKGTRILSAEIKSLESAQPNLSPIIVGYDEEGLAQTISPESIQGRLG 298 Query: 312 HVNDVNFTPFKYQL------SPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 ++D + + ++P + P + +I + + ++ G L+R A+ Sbjct: 299 ALSDYEVPSTEALQFVGSEVAANIPANAEKPNRKLIAVAATVLAGFFGLFTALIRIAIRR 358 Query: 366 R 366 Sbjct: 359 E 359 >UniRef50_UPI000197C816 regulator of length of O-antigen component of lipopolysaccharide chains n=2 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197C816 Length = 332 Score = 115 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 52/325 (16%), Positives = 114/325 (35%), Gaps = 38/325 (11%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE 83 +EIDL +L + LW KKT++ + F G + KWTS A+++ PE Q Sbjct: 10 QDEIDLFHLANQLWVNKKTIIIFIIVFIFMGCVYLVFAKPKWTSQALISLPEIGQLSNYP 69 Query: 84 KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHR 143 + + S + Y + + + Sbjct: 70 TAVSLS---------------------LNSADNMGTY------------DMSLPTKVFNL 96 Query: 144 AIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKES 203 + + + N +P + LS +A ++ AQ L+ ++++++ Sbjct: 97 FLANVDADIVKDKSNTPLSISKPKDANYYILSLSASNAKLAQLELTEWLNFLNKKTQSRL 156 Query: 204 LENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIK-KPVYSNGQA 262 + + LE + +++ K++ + L +L IA + + Sbjct: 157 YQAIWQSLEQRKSQLLQQIKAFETSAKDKKQQRLTLLESALKIAQDTQLNVNEIKQLPNI 216 Query: 263 VKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFK 322 + DD +GA + ++ EK + + Q + ++ + + F Sbjct: 217 IPDDA--LFMMGAPALNALIQQEKEWP--LTFDPRYFDTQVQLSLISSFQLKEQGFDAIN 272 Query: 323 YQLSPSLPVKKDGPGKAIIVILSAL 347 PSL + ++ P +I++LS + Sbjct: 273 IISPPSLALHRESPKVTLILVLSIM 297 >UniRef50_Q2SJH6 Uncharacterized protein involved in exopolysaccharide biosynthesis n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SJH6_HAHCH Length = 317 Score = 114 bits (284), Expect = 7e-24, Method: Composition-based stats. Identities = 60/374 (16%), Positives = 124/374 (33%), Gaps = 97/374 (25%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQEL 82 +NE+ L +++ LW+ K ++++ A L+++ P + S+ ++ P + Q L Sbjct: 13 KDNEVSLRDILLTLWKGKWIIISLTVLSLVAALVMAKNQPNIYKSSILLVPAQEEQKGGL 72 Query: 83 EKSFTKLRVLDLDIKID--------RTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEA 134 + L I+ L ++F + L +E ++SS ++ + KE+ Sbjct: 73 AGIAGQFGGLASIAGINIGGGKSDVAEALAILKSQEFLTRFLKDEQIKSSLFIENWNKES 132 Query: 135 KIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW-------------------TLS 175 E + +L ++K + EPS ++ T+S Sbjct: 133 GQWEK-KDSFLGSLWGRLKGDSNPKDPSSLEPSWQKTYQLFISKHLSVSEDPKSGLVTVS 191 Query: 176 FTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDA 235 A E+A + ID +++ V + K + + + K L+A Sbjct: 192 VMAYEPEDAAHWAALLIDKLNSHVRLQ-----------KKAEAERSIEYLNNQIKLTLNA 240 Query: 236 NIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELN 295 +QR+ Y L A + K+ + +V D Sbjct: 241 EMQRVLYQLVEA-------------------------------QAKVAMLASVRDD---- 265 Query: 296 GELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACG 355 F+ +P +K P + +VI+ + G + Sbjct: 266 -----------------------YVFRVIDPAFIPEQKYKPNRFQMVIVGGIAGCVFGVL 302 Query: 356 GVLLRYAMASRKQD 369 VL + +KQ Sbjct: 303 LVLFIQIITEKKQS 316 >UniRef50_A7I0H6 Chain length determinant protein n=1 Tax=Campylobacter hominis ATCC BAA-381 RepID=A7I0H6_CAMHC Length = 370 Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats. Identities = 49/346 (14%), Positives = 119/346 (34%), Gaps = 67/346 (19%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQEL 82 ++EIDL+ L + LW K ++ + F G+L + I + ++A+V E + Sbjct: 8 KDDEIDLVELFATLWNGKIKIIVITVVFLVVGILYTLIATPWYKASALV---EVGYYNTN 64 Query: 83 EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLH 142 E K +L+ I + +I + V + Y++S + + K Sbjct: 65 ENGVVKNVMLEEPKNI-IEKLKTRYIDLLKDVEGKDVYVKSVNEIKNNNK---------- 113 Query: 143 RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKE 202 +++ ++E+A ++ I +S + Sbjct: 114 ----------------------------FFSIEVLGKSNEKAVKMIDEMIQSVSDE-HNK 144 Query: 203 SLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQA 262 ++ + ++K ++++ + + + I + +L + A + + Sbjct: 145 IIDGYISSQKVKLANIEDQIKVLQNDKMGETENQINNVEQNLQMQKAGALNDILS----- 199 Query: 263 VKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFK 322 ++++L+ + + EL+N + + + + N+ Sbjct: 200 --------------ALQKELKELTDIQKI-----ELKNTLLGQKSVIELTLEPFNYKNTS 240 Query: 323 YQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQ 368 + P K II+ ++ L G MV VL M R++ Sbjct: 241 VVSQIITSKHPEKPKKLIILAVALLAGAMVGVFWVLFADFMKKRRE 286 >UniRef50_Q2T3S0 Chain length determinant protein domain protein n=19 Tax=pseudomallei group RepID=Q2T3S0_BURTA Length = 405 Score = 112 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 46/362 (12%), Positives = 117/362 (32%), Gaps = 16/362 (4%) Query: 31 NLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLR 90 +++ L K + +V A G+ ++ +LP + + V+ PP+ + + Sbjct: 28 DVLIALGHGKGLIARIVAAAVLLGIALALVLPPIYEARTVLLPPDESRGLFGHSLGSLDV 87 Query: 91 VLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSE 150 + + ID L++ +S S+ + +R + ++ V+++ Sbjct: 88 IAGAAMGIDFKTPGELYVALLKSTSIEDSLIRQFGLRKRYRVDTMHAARKALQSRVSVTL 147 Query: 151 KMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNK 210 K+ + +P++ + A ++ + + + KE ++ Sbjct: 148 DKKSGLLTIAADDTDPAVAADLANAHVAALAKLLERIAVTQAQQRRAFLEKEVDKSRVAL 207 Query: 211 LEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFS 270 + + K + + I+ + A I+ ++ Sbjct: 208 ANAQDAYVKLQAKSGVVSVDADTQLAIRHSAEIRSLLAAKQIELSSIGTYATAENPQVKR 267 Query: 271 ISLGADGIERKLEIEKA---------------VTDVAELNGELRNRQYLVEQLTKAHVND 315 I ++ +LE + + E+ + L QL A V++ Sbjct: 268 IEAEVSTLKAQLEKIENGDAASLRGSDAGMATLRSYREMKYQENVVDVLSRQLELARVDE 327 Query: 316 VNF-TPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMAD 374 + + P +K P + +I++ S G ++A V+ R A + Sbjct: 328 AKSGPLVQQVDVAAPPERKAKPSRLLILLASFAGGFVLAVTVVIGREFGRQAVDHARRSG 387 Query: 375 HL 376 L Sbjct: 388 DL 389 >UniRef50_D0Z7Z5 Chain length determinant protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0Z7Z5_EDWTE Length = 317 Score = 112 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 68/350 (19%), Positives = 130/350 (37%), Gaps = 37/350 (10%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ 78 + N+EIDLL++I LW+ K V V F L + KWT+ + ++ P Q Sbjct: 5 PVNHVNDEIDLLDIIRQLWQGKVIVFCVSIMFLAIAGLYIMLTTPKWTAESTLSKPYLNQ 64 Query: 79 WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 +V ++ + + +AKI Sbjct: 65 LANYPAGVMLSQVWTMNDGDNA----------------------------PVIDDAKITG 96 Query: 139 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 198 + I + + ++ +S TA A+ L + +S Sbjct: 97 NVFNTFIAMA---NAQILSGMDISIRPGTTAETFIVSSTANDPALAKKNLQSALISLSDD 153 Query: 199 VVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYS 258 K+ + + L + K ++ + Q D I L +L +AN I++ + Sbjct: 154 ARKQLDALMYSSLRERANSLKIQMQAQENSARAQRDYRISVLKNALQLANQMNIQQTKLN 213 Query: 259 NGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNF 318 D D LG + +E EK + + N + Q + + + + + N Sbjct: 214 PASGEISD-DMLFMLGVPILNTMIEHEKNLP--LKFNASYFDMQEMFDSINGFKLTEDNL 270 Query: 319 TPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQ 368 + F + ++ V K G +A+I++LS L+G +++CG +LLR A+ S + Sbjct: 271 SIFN---ATNISVDKVGQKRALILVLSLLLGVILSCGYILLRNALRSANK 317 >UniRef50_A8FXK9 Chain length determinant family protein n=1 Tax=Shewanella sediminis HAW-EB3 RepID=A8FXK9_SHESH Length = 317 Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 42/343 (12%), Positives = 102/343 (29%), Gaps = 54/343 (15%) Query: 27 IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSF 86 + + ++LWR K ++ + A ++ + +P + ++A+ P L + Sbjct: 15 VSFKAMFAMLWRTKWFIIVFTGLISVATVIYAINVPNVYRASAIYLPKSSDDAGGLAQLA 74 Query: 87 TKLRVL----DLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLH 142 + L +++ + I+ +S + L+ ++ + L ++ + Sbjct: 75 GQFGGLASMAGINLGGGGADKTAAAIEFMKSRAFLQAFIDKRDLTVPILAAKGWEQESGN 134 Query: 143 RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKE 202 I + P PT+ EA + I Sbjct: 135 LLIDPELYDESKQVW---VRAAPPGFQ-------VTPTAWEAYDLFRKMISISEQSKKGF 184 Query: 203 SLENVRN-KLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQ 261 + ++ ++ + K + Q+ IA Sbjct: 185 VKIELEYYSPDLAAKWLGWLVEDLNAYWKTREHEQTQK-----SIA-------------- 225 Query: 262 AVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPF 321 L +L ++V +L Q L + + F Sbjct: 226 ----------FLTKQAENAQLSELRSV------FYQLIAEQTKNTVLAEVS----DEVLF 265 Query: 322 KYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMA 364 + +P +K P +A++ +L +GG+++C L A+ Sbjct: 266 ETIAPIVVPEQKSAPSRALLCLLGFALGGVLSCILGLFYCAIR 308 >UniRef50_Q21Z35 Lipopolysaccharide biosynthesis n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21Z35_RHOFD Length = 388 Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 42/367 (11%), Positives = 105/367 (28%), Gaps = 14/367 (3%) Query: 22 PSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQE 81 ++EI LL+L+ V+ + ++ L ISF + +T+ PP+ Q Sbjct: 9 EEDDEISLLDLLQVVADNLRLLVLAPLTAGLLALGISFAIAPTFTATTKFMPPQQQQSAA 68 Query: 82 LE-KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELD 140 S + ++ +S S+ + + + + K D Sbjct: 69 ASMLSSLGALGGLAGAATGLKNPADQYVAFLKSRSVQDVLIDRFKLMERYESKLKTDART 128 Query: 141 LHRAIVALS---EKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 197 + ++ + + +D + L ++ A T + Sbjct: 129 TLEGVSKIASGKDGLITIDVDDKDPAFAAQLANAYVEELGRLLDRLAVTEAQQRRVFFEK 188 Query: 198 LVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVY 257 + ++ + + + + R + A ++ + Sbjct: 189 QLTNAKDNLIKAEQALGASGVNSSVLKSTGAAVEA--VARLRAQITGQEVKLASMRGYLT 246 Query: 258 SNGQAVKDDPDFSISLGADGIERKLEIEKA-------VTDVAELNGELRNRQYLVEQLTK 310 + K +L + + + + +Q Sbjct: 247 ESAPDFKQAQTELSALRGQLARAEQSEPATDSASSDYIAKFRDFKYYETLFELFAKQYEM 306 Query: 311 AHVNDVNF-TPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQD 369 A +++ + + P +K P KA+I +++ L G V +R A+ Q Sbjct: 307 ARIDESREGAVIQVLDAAQPPERKSKPKKALIALMTTLAVGFALLLFVFIRQALRGAAQT 366 Query: 370 AMMADHL 376 A+ + Sbjct: 367 PESAEKI 373 >UniRef50_Q74C20 Capsule polysaccharide export protein, putative n=1 Tax=Geobacter sulfurreducens RepID=Q74C20_GEOSL Length = 406 Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats. Identities = 50/390 (12%), Positives = 121/390 (31%), Gaps = 47/390 (12%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ 78 + I +L + V+ K + + L+IS LP + + + PP+ Sbjct: 15 SNNFEAERICILEYLEVVLCGWKLITILTVLAFVLSLVISISLPNVYKATTRILPPQQ-- 72 Query: 79 WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 + L + + K + + S + + + ID+ Sbjct: 73 ----DSGLLGLMLGQAGSFGGVGPLATDLLGKANPADMYVSIMTS-----EAISDKIIDK 123 Query: 139 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI-ST 197 +L + + + T+S + A + + Y++ + + Sbjct: 124 FNLMKVYNEKYRIDAYKVLDNNIDILAGKKDGIITISVEDEDPQRAANIANAYVNELSNL 183 Query: 198 LVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAA--GIKKP 255 LV S E+ +N++ + + K K+ R + + ++ D A AA I + Sbjct: 184 LVQLNSKESAQNRVFYEERLAKAKVDLARSEDNLKQFQTKYKVVSVADQAQAAISNIAQL 243 Query: 256 VYSNGQAVKDDPDFSISLGADGIERK-----LEIEKAV---------------------- 288 + D +E K + + Sbjct: 244 NAQLIAQEIQLSNLRKQFTEDSLEVKNVKSTINGLRNQISRIESREAGGAIPNMGLIPEL 303 Query: 289 -----TDVAELNGELRNRQYLVEQLTKAHVNDV-NFTPFKYQLSPSLPVKKDGPGKAIIV 342 + E + L +Q A + ++ + + + +P KK P +++IV Sbjct: 304 GQQYFRLMREFKVQEAIVDLLTKQFESAKLGELKDSYYVQIIQTARVPDKKSKPKRSMIV 363 Query: 343 ILSALIGGMVACGGVLLRYAMASRKQDAMM 372 +S +I V++ + ++ + ++ Sbjct: 364 AMSTVITFGFGILSVIIMHMLSKLPSNELV 393 >UniRef50_B0VFR9 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFR9_9BACT Length = 395 Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats. Identities = 58/382 (15%), Positives = 132/382 (34%), Gaps = 33/382 (8%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE 83 NE+ LL++I V+ + K V+++ A ++ S ++PQ W S A + P Sbjct: 3 KNELGLLDIILVIAKRKTLVISICLLVAIGAIIYSLVVPQYWESKATLMPIAESGSLGSL 62 Query: 84 KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHR 143 + ++ D+ + FI QS EE +R + + Sbjct: 63 GGGFMDLLGSGLLQTDKYDMAVDFIYIMQSRKFQEEVIRKFNLIPYYKINEPDTLKAMEL 122 Query: 144 AIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKES 203 A+ LSE + + K + + + + L+ YI + ++ Sbjct: 123 AVKKLSESTMQIFYDQ-KTYLVNIIAETKNKELSRQIVQYHLDSLNKYILHSKMSKGRQK 181 Query: 204 LENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAV 263 E + +++ Q Q R K +I + + + + + + + + Sbjct: 182 REFLEKQVDSHLQAVYSLSEQIRDFQKKNRSIDITQQTEAQLELYSDIVAEYMQTEIEHS 241 Query: 264 KDDPDFS-----------------------ISLGADGIERKLEIEKAVTDVAELNGEL-- 298 +S G+D + + + D+A ++ Sbjct: 242 LALSQYSADSPVVINLAEKLQLLKKKIKSLEKSGSDLVPEYIVQIDKIPDLAMQYAQMML 301 Query: 299 ------RNRQYLVEQLTKAHVNDV-NFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGM 351 + +YL Q A + +V + F+ +P L + P +A+ V++S + + Sbjct: 302 NLEIEKKIIEYLYPQFELAKLEEVKDLPTFEVYDAPQLAGIRSKPKRALTVVISTVAAFI 361 Query: 352 VACGGVLLRYAMASRKQDAMMA 373 ++C L+ ++ ++ A Sbjct: 362 LSCLLALIIESLQGENKEKTQA 383 >UniRef50_UPI0001C34705 lipopolysaccharide biosynthesis protein n=3 Tax=Providencia rettgeri DSM 1131 RepID=UPI0001C34705 Length = 318 Score = 110 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 50/341 (14%), Positives = 113/341 (33%), Gaps = 48/341 (14%) Query: 36 LWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLD-- 93 LW K T+ + G + +WTS ++ PE Q ++ Sbjct: 19 LWVHKNTIFIITAFSMMIGCFYLALAKPQWTSVVFISSPELGQLSNYPEAVDLSLREQTW 78 Query: 94 LDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMK 153 D T+ FNLF+ + E+ Sbjct: 79 ADKADLSTKVFNLFLANIDAYIEREK---------------------------------- 104 Query: 154 AVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEI 213 N+ +P + L+F++ ++ AQ+ L+ + +++ + +++ LE+ Sbjct: 105 ---PNSPVAIFKPEVGNYRVLTFSSTNAKLAQSELTELVAFLNQQTQQNLYQSIHQSLEL 161 Query: 214 KTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISL 273 + + +L TK Q +I + + G + + + D+P + + Sbjct: 162 RKHSLQRRLNALEASTKEQEQLHIALWERAKNQRLKGG---EIKQLPENISDEPLLMMEV 218 Query: 274 G-ADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVK 332 + L+ + + + + + L+ +++ F PSL Sbjct: 219 AVFTALFELLQDTR-----LPFDADYFETKTALSLLSSFKLSESRFQAVNIISPPSLAKH 273 Query: 333 KDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMA 373 +D P ++ LS L G +V V +R + + + + Sbjct: 274 RDSPRVPFVLGLSLLFGIVVGVTYVFIRQSWRLGRTNTVTE 314 >UniRef50_C5BSK8 Chain length determinant protein n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BSK8_TERTT Length = 293 Score = 110 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 56/346 (16%), Positives = 112/346 (32%), Gaps = 62/346 (17%) Query: 29 LLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEK--SF 86 ++ L LW K ++ + F G+L S LP + S V + + Sbjct: 1 MIKLWESLWSGKFWLLGITALFILCGVLFSLSLPNMYESKGVYGISQDDGVAKNMSGQLG 60 Query: 87 TKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIV 146 + +++ N + QS +E +R+ + + K + + + Sbjct: 61 GLAAIAGINLGAGGQNKINHAVVLGQSWPFWDELIRTHN-LKPLVFGVKEWDRARDKFVW 119 Query: 147 A----LSEKMKAVDDNASKKKDEPSLYTSW--TLSFTAPTSEEAQTVLSGYIDYISTLVV 200 L ++ K + S K+ EPS Y + + F + + +LS + + S V Sbjct: 120 DEDIYLVDEQKWIRKPPSGKEAEPSSYEVFDKIIDFVEIKFDASTGLLSIKVKHYSPHVA 179 Query: 201 KESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNG 260 KE +E + KL + DR K + + I L +D A +K Sbjct: 180 KEWVEMIVEKLNGDFR--------DRDIVKAEKN--IGYLQEKIDETKIAELK------- 222 Query: 261 QAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTP 320 + + Q L + + + Sbjct: 223 --------------------------------TVFYNMVEAQTKTLMLARVDEDYLVEPV 250 Query: 321 FKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASR 366 P + P + +IV+L A++GGM + + ++ + R Sbjct: 251 I----MPMVAESPVSPVRKLIVVLFAVVGGMFSLLFLFVKNIFSKR 292 >UniRef50_C9LJ77 Chain length determinant protein n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LJ77_9BACT Length = 353 Score = 108 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 50/359 (13%), Positives = 115/359 (32%), Gaps = 27/359 (7%) Query: 28 DLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTP--PEPVQWQELEKS 85 LL + +L K + F + +P+ + S V+ P P S Sbjct: 7 SLLKVARLLLSKWKQIFIFCFIVVSLSIGYIMSIPRSYQSDVVMLPEIPSNSSLSSGLGS 66 Query: 86 FTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHR-- 143 + + L + F K + +P + L + L + Sbjct: 67 LASMAGVKLGNGDSEDAIYPEFYPK----------VVKTPDFLVALLNKPVRPKGLKQDV 116 Query: 144 -AIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVL-----SGYIDYIST 197 + L++ KA ++ + + T +AQ L + + ++ Sbjct: 117 SLFIYLTQHQKAPWWDSLFQWGGLGSKETPTNKIDPQRLTKAQEKLLKGLGASIVSFVDK 176 Query: 198 LVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQR-LNYSLDIANAAGIKKPV 256 ++ E+ Q Q + N + + + Y+ I+ A Sbjct: 177 RTNMVTINVTMQDPEVAAQVATMVENQLQQYIANYRTSKARNDVKYAEKISQKALEDYKA 236 Query: 257 YSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDV 316 A D + + L + + E + + +L ++ QL +A V + Sbjct: 237 AQKVYARFADANQDLVLTSV-----QQEETRLENEMQLAYNGYSQSVTQLQLAQAKVQE- 290 Query: 317 NFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADH 375 F ++P+K P + I V + A++ ++C ++++ AM + + ++ Sbjct: 291 RMPAFTVLQQANVPIKPSAPKRMIFVFMMAVLSFSLSCLWIIIKSAMRDQPEMQLLETK 349 >UniRef50_C8PNG3 Chain length determinant protein n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PNG3_9SPIO Length = 337 Score = 108 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 61/365 (16%), Positives = 117/365 (32%), Gaps = 53/365 (14%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISF----------ILPQKWTSAAVVT 72 + EI LL+L +VLWR K+ ++ V + A + +F +P +TS A + Sbjct: 7 ESEEISLLDLAAVLWRWKQLIIGVTVLLSIAVFVYTFIGKKMDPEKSFMPDVYTSTAFMR 66 Query: 73 PPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLK 132 S + + N + Y+ +S +D + Sbjct: 67 IQSGNSSASGALSSLLQQSGLGGLTGGIGAGGNTTQQLAF-------YIANSNSFLDTIA 119 Query: 133 EAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYI 192 + + I + K ++L+ T AQ + Sbjct: 120 DEL--HISEKYKIKKFIKTESRTIVKGLIKAKMDEKSGVFSLAATHIDPVFAQKAALLAV 177 Query: 193 DYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGI 252 DY + L+ K + Q+ K+ Q I+RL A + Sbjct: 178 DYYEKRFAELGLD------------TKVQEKQNLEKSLEQSFNEIKRLEQ-----EAGDL 220 Query: 253 KKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAH 312 + + +G +L + I+R++ +++ V + EL + Sbjct: 221 ENKIAQSGGIKGA------ALAMEQIKREISVQERVYGQLKAQYELLKVEM--------- 265 Query: 313 VNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMM 372 F+ P +P KK GP +A I I++ G + L A+ +D + Sbjct: 266 --ASETPVFQILDMPEIPEKKSGPSRAKICIIAFGAGLFFSIFLAFLLNALQEIWKDPVF 323 Query: 373 ADHLV 377 L+ Sbjct: 324 RAKLL 328 >UniRef50_Q39VZ4 Lipopolysaccharide biosynthesis n=5 Tax=Geobacter RepID=Q39VZ4_GEOMG Length = 401 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 51/381 (13%), Positives = 116/381 (30%), Gaps = 37/381 (9%) Query: 15 PDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPP 74 P +EI+LL L+ VL R K+ + + A A S LP +T A V PP Sbjct: 4 PMRNEQMVEEDEINLLELLQVLVRRKRLIAVMCVAAALLSAAYSLTLPNIYTGTARVLPP 63 Query: 75 E--PVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLK 132 + + L +L++ +S S+ + ++ + Sbjct: 64 QKDGGGGLSALLGGQAGALAGLAGVGGLGGGADLYVGILKSRSVADAVIKKLDLQKELET 123 Query: 133 EAKIDELDLHRAIVALSEKMKAVDDNASK----------------------------KKD 164 + + + +V + + A+ K Sbjct: 124 KTPDETRTKLQNVVKIQAGKDGIITVAADSRNPQLAARLANTFVDELGKKSVELNLTKAG 183 Query: 165 EPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQ 224 ++ L ++A+ L G+ + + + +E + + E +++ Sbjct: 184 TERIFLEKRLDVVKADLKKAEEALRGFQEKNRAF---KVDDQATATIEGAAKLKAEIVSK 240 Query: 225 DRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEI 284 + + + A A ++ + + + + + + + Sbjct: 241 EVQLASLRSYQTNENPEVKAVEAALARLRGQLGALTGGGRSNDLMLSAGAMPTLGLEYVR 300 Query: 285 EKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVIL 344 E E +QY V +L +A + + + P KK P +++IVIL Sbjct: 301 LMREVKTQEAIFEQLTKQYEVAKLGEAK----DSSSIQVLDEAVAPQKKSKPKRSLIVIL 356 Query: 345 SALIGGMVACGGVLLRYAMAS 365 S + + ++ Sbjct: 357 STVTALFLGIFIAFIQEYAQK 377 >UniRef50_Q1ITA8 Lipopolysaccharide biosynthesis n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ITA8_ACIBL Length = 428 Score = 107 bits (266), Expect = 6e-22, Method: Composition-based stats. Identities = 48/370 (12%), Positives = 109/370 (29%), Gaps = 57/370 (15%) Query: 37 WRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLD--- 93 W + ++ ++F++P+++ S A + PPE + + + Sbjct: 30 WERRGAIVKAAVIGVIVSTTLAFVIPKQYESTARIMPPEGGMSSAIMAALASRALPGNLG 89 Query: 94 --LDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEK 151 +F+ QS S+ E + K D L ++E Sbjct: 90 AIAGSLFGFQSTSTVFVNLLQSRSVTERVVDRFDLQKVYRSRYKQDALKKLHRRTEIAED 149 Query: 152 MKAVDDNASKKKDE----------------------PSLYTSWTLSFTAPTSEEAQTVLS 189 K + + S F A + L Sbjct: 150 RKTGIITITVADTDRRRARDMAQTYLDELNSLVTRVNSSAAGREREFIAQRLVTVKRDLD 209 Query: 190 GYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLD--------------- 234 +S K + +V+ + KL + I +++L Sbjct: 210 DAERQLSVFSTKNATLDVK-EQTRAMVEATAKLEGELIIARSELSSLDQIYGPENVRVRA 268 Query: 235 --ANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVA 292 A + +L + L A +G+ + + + + + + Sbjct: 269 GRARVGQLEHELKNATGSGV-------PSDITESTPYPPLRALPTLGVQWADLYRRVKLQ 321 Query: 293 ELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMV 352 E EL ++Y + ++ +A P+ P +K P + +I+++ L+ ++ Sbjct: 322 ETVFELLTQEYELARIEEAKA----IPSISVIDPPNWPERKSFPPRLVIMLVGTLLS-VL 376 Query: 353 ACGGVLLRYA 362 V++R A Sbjct: 377 GTFFVIVRKA 386 >UniRef50_Q6AS85 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AS85_DESPS Length = 360 Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 53/369 (14%), Positives = 118/369 (31%), Gaps = 26/369 (7%) Query: 2 SSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFIL 61 SS+ +Y ++EIDLL+L+ +W+ + + V L++ L Sbjct: 14 SSIQAPNLCPLSVSNY-----RDDEIDLLSLLVDVWQQRWFIGGAVSVIGALALVLLLAL 68 Query: 62 PQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYL 121 P + A + P V L + ++ L+ + + V Sbjct: 69 PSTYEVTAEIEIPSAVSSPLLPALYQQIDTLENLENVPSEMIGEDGNMELPFVLRTPSVG 128 Query: 122 RSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTS 181 + + + + K + + + +++ AP Sbjct: 129 SNPLLAQHRFNRVYQLLKSRDMWLAYQKKTGKTFSAEQGLQAELGRFKGALSVTVLAPQG 188 Query: 182 EEAQTVLSGYIDYISTLV--VKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQR 239 ++ Q++ + + IS ++ + L+ + +++ + +++ Sbjct: 189 KKNQSITNPTVLGISLRGGGDEKLARELEGFLQFVNERVVTEVSGGQQIILKGYRDSVEN 248 Query: 240 LNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELR 299 + + N G P+ + D + G+ L Sbjct: 249 QISLIQLQNQVG---PMKDSTAGKGQDAGVASMPATAGL----------------AYGLT 289 Query: 300 NRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLL 359 Q ++QL + F+Y P +K P KA+I+ + L G +A LL Sbjct: 290 QLQSSLQQLQNFSPDLAGLKGFQYLSHPLGEGEKIKPKKALILAATLLFAGFLAIVLALL 349 Query: 360 RYAMASRKQ 368 R A+ RK+ Sbjct: 350 RTALQRRKE 358 >UniRef50_B8KUX8 Chain length determinant protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KUX8_9GAMM Length = 351 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 59/364 (16%), Positives = 122/364 (33%), Gaps = 48/364 (13%) Query: 15 PDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLIS-FILPQKWTSAAVVTP 73 P Y + ++EIDL LI+ LWR + ++A+ AF A I + A + P Sbjct: 31 PSYQWSDARDDEIDLFELIAGLWRRRFLIVALTAAFVIAAAGYVTLIATPTFVVEARIRP 90 Query: 74 PEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLL----EEYLRSSPYVMD 129 L K+ + + A F +FQS S+L + + S+P + Sbjct: 91 ATEQALIGLNKARS--------FSVGPAAALAQFSAEFQSRSVLQSAFDAVMSSNPGTVA 142 Query: 130 QLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLS 189 E L + + +++ +E + LSF A +E + L Sbjct: 143 WTGEEMPPSLTREQLFLEGFLPRINIEEETVPSGNE----SIRLLSFEAQNAEAGRDTLD 198 Query: 190 GYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANA 249 I + L++ K +L + + + + ++A + Sbjct: 199 AIIQRAKAAATTAITNSFTANLDLNISQRKRELERILAQIADGRTD---MTRIATEVAQS 255 Query: 250 AGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLT 309 + ++ V+ ++ +L+ +E L Sbjct: 256 ETGQGIAVADSSGVR--------------------------YTSVSAQLQAEIAQLEVLQ 289 Query: 310 KAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQD 369 K ++++ + P P + P K +IV + + G + + L+ A +R+ Sbjct: 290 KIPLDNL--QVIRIDQPPIAPTRPVKPKKTLIVAAAGVAGALFSLLVALVLNARDARRAS 347 Query: 370 AMMA 373 A+ Sbjct: 348 AISQ 351 >UniRef50_A0B7Q9 Lipopolysaccharide biosynthesis n=1 Tax=Methanosaeta thermophila PT RepID=A0B7Q9_METTP Length = 280 Score = 106 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 47/347 (13%), Positives = 108/347 (31%), Gaps = 74/347 (21%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE 83 ++EIDL ++I VLW + V+ + A +S ++P + ++ +V Sbjct: 6 DDEIDLRDIIRVLWENRFLVVGIFLIAVVAAGAVSIMMPSVYRASCLVALGNFGD----- 60 Query: 84 KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHR 143 V + + F+ S L D+++ + D Sbjct: 61 ------PVYTIQSGASEILTSDAFVLDLLSRLNLSLSPGELAEFKDRMRIEPVKGSDRL- 113 Query: 144 AIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKES 203 ++S EE + +L + + Sbjct: 114 ----------------------------LSISMETTDPEEGKRILREMVSLFEDRSNQSY 145 Query: 204 LENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAV 263 E + L +++ NQL +++ A +K+ + G + Sbjct: 146 TE-------------QRGLLLEQLSATNQLLDSVEESINQTHQA----MKEIEGATGVSS 188 Query: 264 KDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKY 323 + + KL+ + R L+++ H + + Sbjct: 189 LEKSML--------LSYKLDYLQNAES---------QRLGLMDRYMNLHKQLILMKSLEI 231 Query: 324 QLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDA 370 +P++P++ P + +IV ++ ++G M+ LR A+ +Q Sbjct: 232 VEAPAVPLQPVKPRRMLIVGVAGMLGLMLGVFAAFLRVALRREEQRT 278 >UniRef50_A4BYL5 Putative uncharacterized protein n=1 Tax=Polaribacter irgensii 23-P RepID=A4BYL5_9FLAO Length = 371 Score = 106 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 54/361 (14%), Positives = 124/361 (34%), Gaps = 21/361 (5%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTP-PEPVQWQEL 82 ++ ID++ L+ W A+++++ + FA GL ++ ++T++ P + Sbjct: 13 DDSIDIIALLKEFWNARRSILKITLVFAFLGLFVAIFSKNEYTASTTFVPLVQGKSSGGS 72 Query: 83 EKSFTKLRVLDLDIKIDRTEAF-NLFIKKFQSVSLLEEYL------------RSSPYVMD 129 S L ++L E L+ S+ E L S Y + Sbjct: 73 LGSLASLAGINLGGGGSSDEISPELYPLIVNSIPFQLELLNTQLTIEGQEQLVSYQYYYE 132 Query: 130 QLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLS 189 + + + + S + + +A + + +S + S +++ + Sbjct: 133 NIYSPGVLHIIKKYTLGLPSLLISFLKSDAEIIEKNTLDKENEIISISQTESVLIKSLKA 192 Query: 190 GYIDYISTL-VVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIAN 248 ++ + K ++ + +I +LNY + Sbjct: 193 QLGLSVNAKEGYISISVTLPEAKASAELALKAQITLQDYALNFKTQKSIAQLNYIKERYA 252 Query: 249 AAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQL 308 + A D + I+ KL ++ D+A ++ +QL Sbjct: 253 EKKDEFNSVKFTLARFQDQNNGIN--TSLGRTKLLQLQSDYDLAFSVFSELAKKLETQQL 310 Query: 309 TKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQ 368 + F S+P +K GP +AII+I+ +G +++ G +L + + S K Sbjct: 311 QVKK----DTPLFTVLKPVSIPSEKSGPKRAIILIVYLFLGFVISLGAILGKKYLKSLKA 366 Query: 369 D 369 + Sbjct: 367 E 367 >UniRef50_C1DT90 Ferric enterobactin transport protein n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DT90_SULAA Length = 277 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 53/347 (15%), Positives = 104/347 (29%), Gaps = 81/347 (23%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE 83 +EIDL L LW+ KK + ++ L++F +P+++TS + + L Sbjct: 10 EDEIDLFELFEKLWKRKKIIFSITLLGTLIATLVAFTIPKQYTSESSIVVVNINTSPSLS 69 Query: 84 KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHR 143 L +L + + S L E+ L+++ Sbjct: 70 LDRESLYILS--------QLNFPILPILNSKDLAEKVLKNNNL----------------- 104 Query: 144 AIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKES 203 I + + KK + + +S + A+ + Y+ + VV ++ Sbjct: 105 NIEPEKFIKNNLKVDQDKKSGQNKKNEVFRISISWYDPNTAKKLNEDYLIELK-KVVNQN 163 Query: 204 LENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAV 263 L +LE + Q E L + K + D Sbjct: 164 LNQFLTQLENQYQKRLELLNIEYKKAMVEKD----------------------------- 194 Query: 264 KDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKY 323 E K+E+ K + L + K Sbjct: 195 ---------------ELKMELVKNQVEKISSGYYLLEL-----------FKNNKEGFIKV 228 Query: 324 QLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDA 370 SPS P P K +I+ + + ++ L+ A +R+++ Sbjct: 229 VNSPSYPTAPSKPKKGLILAIGFVSSLFLSLFVALVVEAWENRRKNK 275 >UniRef50_D1PA57 Chain length determinant protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1PA57_9BACT Length = 360 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 50/339 (14%), Positives = 114/339 (33%), Gaps = 23/339 (6%) Query: 27 IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPV-QWQELEKS 85 I+L++ I +L K+ ++ +F GL+++F P+ + S ++ P E + S Sbjct: 16 INLVSCIKILLADKRYILIYIFIAGILGLIVAFTTPKTYKSTVMLAPEESGAGFSGSISS 75 Query: 86 FTKLRVLDLDIKIDRTEAFNL-----------FIKKFQSVSLLEEYLRSSPYVMDQLKEA 134 + +++ I + I F ++ L Y LKE Sbjct: 76 LASMVGMNMKIGQSGDALYPEIYPDLVSSTDFIIGLFNVKIRTKDNLIMCDYY-TYLKEH 134 Query: 135 KIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDY 194 + L K + + ++ + W A ++ + ++ +D Sbjct: 135 QKKALMDWPLAALSKVIEKFTQKDITPHRENNKINPFWLTKDEANIAKATEQNINCIVDK 194 Query: 195 ISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQL-DANIQRLNYSLDIANAAGIK 253 ++++ + + K L K + +++ + D A Sbjct: 195 KTSVITISVTDQDPLVAALMADSVKAHLQIAITNYKTKKARVDLKYMEKLFDEARK-QYD 253 Query: 254 KPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHV 313 K G A D D S ++ + + + +L + + QL +A V Sbjct: 254 KARQQYGAAADADMDLS-------LQSYKLKTEDLENDMQLKYNIYQQVVEQLQLAQAKV 306 Query: 314 NDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMV 352 + F S S+P++ K + + + +G +V Sbjct: 307 QE-KTPAFTVVQSASVPIRPSSRSKIMTIFIWMFLGFIV 344 >UniRef50_A4EGG2 Succinoglycan biosynthesis transport protein exoP n=3 Tax=Rhodobacteraceae RepID=A4EGG2_9RHOB Length = 731 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 69/445 (15%), Positives = 144/445 (32%), Gaps = 90/445 (20%) Query: 21 SPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISF-ILPQKWTSAAVVTPPE-PVQ 78 ++EIDL LI LWR K ++ AG +F + +T+ A V Q Sbjct: 39 PSEDDEIDLGALIGTLWRGKLWIILSAVIALVAGGYYAFGVATPVYTTTASVALESRQEQ 98 Query: 79 WQELEKSFTKLRVLDLDIKIDRTEAFNLFIK-------------KFQSVSLLE------- 118 +++ + L + I + + + +F S E Sbjct: 99 IVDIDSVMSGLSGDQITINTEVEVLRSRRLMGKLVDDLNLVADPEFNSTLTDETWYSLGA 158 Query: 119 ---------------EYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKK 163 L+S+ + D + +A ++++ + + + V +N +K Sbjct: 159 MADAIRENIFGQPAGNLLQSNEAIRDSVVDAVLEQISVSNVRQSYVFNISVVTENPAKSA 218 Query: 164 D----EPSLYTSWTLSFTAPTSEEAQTVLSGYID--YISTLVVKESLENVRNKLEIKTQF 217 LY + + EA L+ + I + L+ + ++ + Sbjct: 219 AMANRLAELYVEDQIVLKFEKTAEATEWLTDRVAELQIELEASENQLKEFSSNTDLISPE 278 Query: 218 EKEKLAQDRIKTKNQL----------DANIQRLNYSLD---------IANAAGIKKPVYS 258 L + +++ A + LN + D +AN +++ + Sbjct: 279 GLVGLNRQLKDLRDRQAGIDAEVAANVARVAALNAAFDSGDLLQMAAVANDTALRQLAAT 338 Query: 259 NGQAVKDDP----------------DFSISLGADGIERKLEIEKAVTDVAELNGELRNRQ 302 N A ++ D S++ + +EI +++ + L+ Q Sbjct: 339 NDTAAIENQFQTRFATILARAVMARDRSVAQADTVAQSMVEITQSIATQSNELVALQQLQ 398 Query: 303 YLVE-----------QLTKAHVND-VNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGG 350 E +L + V + + LP P KA+I+ S ++G Sbjct: 399 RETEASRLIYEFFLGRLKETSVQQGLQQAESRILSYAVLPSAPSAPRKAVILTFSMILGL 458 Query: 351 MVACGGVLLRYAMASRKQDAMMADH 375 +V G VLLR + + A + Sbjct: 459 IVGTGLVLLRELSQNTFRTAEDLED 483 >UniRef50_B5CXQ8 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5CXQ8_9BACE Length = 369 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 48/363 (13%), Positives = 101/363 (27%), Gaps = 14/363 (3%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 M N KQ + N I L LI +L+ + + V A G +I F Sbjct: 1 MEEKNKKQQETS--------DEIKNNITLFKLIRILFHNRFKLYKVCGISALIGAVIGFS 52 Query: 61 LPQKWTSAAVVTPPEP-VQWQELEKSFTKLRVLDLDIKIDRTEA-FNLFIKKFQSVSLLE 118 LP+ + + ++P L + +++ FN+F + ++ Sbjct: 53 LPKTYHAYVSLSPESGMNGASGLSGIASMFGLVNSSTGFGEDALTFNMFPEIVKTNPYAL 112 Query: 119 EYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTA 178 E L+ D D LD+ + K + Sbjct: 113 EVLQVPIQTQDGKTMLLYDYLDIEQKPWWTYVTGLPKAAIGGVKSLFSQEKPDTVTTIDP 172 Query: 179 PTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQ 238 + Q + + + V + N+ + D K Q Sbjct: 173 FKLTKEQDMHIKMLQDV-LKVETDVKTNMTKVSVALQDPLAAAIVADSAVYKLQEYITDY 231 Query: 239 RLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADG--IERKLEIEKAVTDVAELNG 296 R + + Y + ++ ++ + L Sbjct: 232 RTRKAKQDYDFQLNLCEQYKKEYFAAQQEYAQFADANRNVILQTVTSEKERLQKNLSLAE 291 Query: 297 ELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGG 356 ++ ++ Q+ + V + F ++P+ P K +I+I A + + Sbjct: 292 QIYSQSMGQLQVLRGKVQEAK-PVFAVVEPATVPLVPSSPKKMMIIIAFAFLAFIFESAW 350 Query: 357 VLL 359 +L Sbjct: 351 ILF 353 >UniRef50_D2QRK9 Lipopolysaccharide biosynthesis protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QRK9_9SPHI Length = 362 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 44/358 (12%), Positives = 93/358 (25%), Gaps = 3/358 (0%) Query: 10 SDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAA 69 S EI L +++ L +++ V+ G L +F P +TS Sbjct: 2 SVTEAQKQENREEDEIEIRLSDIVQFLKDSRRRVLLGSIVGLIIGALYAFSKPNVYTSQV 61 Query: 70 VVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMD 129 V P + L + +D+ + L Sbjct: 62 TVMPELQAKAGGLGGLGGLAGLAGIDLNSATGGTMDAIRPDLYPDVLKSIPFALYLLSQP 121 Query: 130 QLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLS 189 E ++ L I ++ K E S ++E + ++ Sbjct: 122 VYSEKLQAKMTLQEFINRVNRSWIKDLFAGGSKDAENRKLDPKNFSKAIQITKEQEDLVK 181 Query: 190 GYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANA 249 I + + + ++ R + Sbjct: 182 --IVQTNMSAAYDKKTGILTLAATESDPVVAATEVRLSLEYLTNYIVTYRTEKARKQVAF 239 Query: 250 AGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLT 309 + + S + + + A+ E L +QL Sbjct: 240 LTKRVSEAKGRYQSAEYALSSYRDRNRSLFLQTAKLEEQRLQADYLLEQSVYNELSKQLE 299 Query: 310 KAHVN-DVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASR 366 +A + FK P +P++K P + I++ A+ G V +L + + + Sbjct: 300 QAKIKVQEETPVFKVLEPPVVPLRKSAPKRTFIMLGFAIAGVFVTLIILLTKRLLHTN 357 >UniRef50_D0MG08 Lipopolysaccharide biosynthesis protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MG08_RHOM4 Length = 403 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 41/364 (11%), Positives = 99/364 (27%), Gaps = 49/364 (13%) Query: 43 VMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSF--TKLRVLDLDIKIDR 100 + V A ++ S +LP + + A V PP L VL + Sbjct: 28 IAGVTAVAALGAVIFSLLLPNWYRATARVLPPASGGLSPLASQLLGNLPGVLGGVLGGSN 87 Query: 101 TEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNAS 160 T + ++ S ++ E + V E +E AI LS+ + D Sbjct: 88 TAGYERYLSILSSRTMYERLVDRFNLVSVYGLE--DEEHPQEAAIEELSDNVSFDVDPD- 144 Query: 161 KKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLE-------I 213 + +S + A + + ++ ++ + ++ R + Sbjct: 145 --------FEYLEISVLDRDPQRAAEMANFMVEELNRINADLMTQSARRYRQYVERRYHE 196 Query: 214 KTQFEKEKLAQDRI----------KTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAV 263 L + + + + + + G Sbjct: 197 ALARLDSVLDAQEAFHKRYGLFDLEAQARGFLEYVATLRAEALQTEMQYEALRAQFGDDN 256 Query: 264 KDDPDFSIS------LGADGIERKLEIE----KAVTDVAELNGELRNRQYLVEQLTKAHV 313 + + +E + + + + +L + L ++ + Sbjct: 257 PQVRVLADMKATAERRYREALEGQERLLPVPQQEIPSALRQYFDLERERLLQTRILEVLA 316 Query: 314 ---------NDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMA 364 + + PVKK P +++IV+ L ++ VL Sbjct: 317 PLYEQARFEEERRVEAVQVVDPAVPPVKKAWPRRSLIVLGITLAAFALSVLFVLAHGWWQ 376 Query: 365 SRKQ 368 +++ Sbjct: 377 EQRE 380 >UniRef50_C9RR06 Lipopolysaccharide biosynthesis protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RR06_FIBSS Length = 399 Score = 103 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 57/381 (14%), Positives = 114/381 (29%), Gaps = 36/381 (9%) Query: 26 EIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ--WQELE 83 EI L L + L K V+ A +++ +++ K+ ++A+VTPP Q L Sbjct: 11 EICLRILNNDLKHFKFVAAMVIIPTIIAFVMVMWVVKPKYAASAIVTPPASTQPMSGMLS 70 Query: 84 KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAK-------- 135 + L E N S L + + K Sbjct: 71 GLMGSSGMSSLLGISMDNEDVNAVWTILNSWELHNMVIDKFDLAKHYKFKGKFHADLLKE 130 Query: 136 --------IDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTV 187 +++ ++ ++ AVD S + ++ + E QT Sbjct: 131 FRKNFGLELNKEEMLSIYFKDTDAKLAVDVLNFMLDKADSSFNAFKTKQARQSREYFQTR 190 Query: 188 LSG--------YIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQR 239 L +++ V +LE ++ E A + R Sbjct: 191 LDSCYHTLDSLLGEFVDFQVKNNVY-EPNVQLEATIKYLSELQAMREEVNMELNFEKLDR 249 Query: 240 LNYSLDIANAAG-IKKPVYSNGQAVK---DDPDFSISLGADGIERKLEIEKAVTDVAELN 295 S + IK + G A+K + + + + +A + E Sbjct: 250 GENSKRYQELSKRIKGVNSALGGALKGKHSNIGMIELKKSPELYAEYLRREAEIRIQEAM 309 Query: 296 GELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACG 355 ++ +Q +L +A T P KK P + +I+ + +A Sbjct: 310 YKVLRQQSEQMRLEEAKT----LTNLHVLEPPWQNDKKISPKRGLILAFTVFFSFFLATL 365 Query: 356 GV-LLRYAMASRKQDAMMADH 375 L+ Y + + ++ A Sbjct: 366 LSNLVEYMRSESRTNSKTAAE 386 >UniRef50_C9MSS5 Chain length determinant protein n=2 Tax=Prevotella RepID=C9MSS5_9BACT Length = 355 Score = 103 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 49/363 (13%), Positives = 113/363 (31%), Gaps = 24/363 (6%) Query: 22 PSNNE---IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ 78 + +E ID + +W+ K + V+ L F LP+ ++S+ + P + Sbjct: 2 DNQDEYKGIDYTAVFHAIWKKKMVYLTVLSFTILFASLYIFSLPRTYSSSTEIAPEVDSK 61 Query: 79 WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 + +D+ + + I L+++ S + ++ Sbjct: 62 TPGGGTLGSLASTFGIDMSTLES---SDAITPMLYPDLIDDNGFISMLLPIHVQTGDSTF 118 Query: 139 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTV-------LSGY 191 + + K+ + A+ + S + T A + + Sbjct: 119 KGTYYDYKRTATKVPWWNKLANDLLTKISSKKPEEGKYEVGTPFNAYHLTKLDNSIIESI 178 Query: 192 IDYISTLVVKE-----SLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDI 246 I+ V K+ ++ L KT + + TK + D + + Y + Sbjct: 179 RKQIAIKVDKKTGAITINTEDQDPLIAKTIADSTRELLKDFITKYRTDKARRDVEYYKKL 238 Query: 247 ANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVE 306 + A D + +SL + ++ K E + + N Q + Sbjct: 239 TDEAKSSYEHQRLKYGEFSDSNTDVSLPS--VQSKGEDMENEMQLRYNNYSQLKGQLQLS 296 Query: 307 QLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASR 366 L K F ++P+K GP + + ++ + L ++ VL Sbjct: 297 -LAKLRE---RTPVFTQIKGAAVPIKPTGPKRMLFLLGTVLFSFILTTIYVLRSITHTQN 352 Query: 367 KQD 369 ++ Sbjct: 353 RKQ 355 >UniRef50_A4SDR9 Lipopolysaccharide biosynthesis protein n=2 Tax=Chlorobium/Pelodictyon group RepID=A4SDR9_PROVI Length = 370 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 48/371 (12%), Positives = 110/371 (29%), Gaps = 30/371 (8%) Query: 15 PDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPP 74 P + P ++EI LL+L L + KK ++ + A A +++ + Sbjct: 11 PQFQRPDPYDDEISLLDLAITLAKHKKLIIGLPLAVAIVTAVVTMFM---------PATY 61 Query: 75 EPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEA 134 + V ++ + F +L + Y ++ + Sbjct: 62 TATTTLLPRGVDKNILVSLVESQPMGDSLVARF-------ALQKAYGVATSRDARGVLAE 114 Query: 135 KIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDY 194 + L + + A+ P + F T + +L Sbjct: 115 AASVKAEKDGTITLDVDDSSPERAAAIANAYPDVLRQLMGKF-IVTPASERRMLFEKQLP 173 Query: 195 ISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKK 254 + +++E+ ++ + + +K ++L A I L + I Sbjct: 174 DAETMLEEARSAMQELQAGSKSVAMDGKVESLVKAASELKARIAMKEVELVV--IGNIDS 231 Query: 255 PVYSNGQAVKDDPDFSISLG---------ADGIERKLEIEKAVTDVAELNGELRNRQYLV 305 + +G + L + R+ +AV + L + + Sbjct: 232 GTFQDGLPRQQLNALWEELASVENNPTFISKVSGREQAYIRAVGGLTYAETRLDALRRQI 291 Query: 306 EQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 A + +P P +A IV+++AL G +A + A+ S Sbjct: 292 GLAKVA--EQREAPMIQVLNRADVPSGASKPQRAKIVLIAALAAGFLAVLWAFVVEALRS 349 Query: 366 RKQDAMMADHL 376 +D+ + Sbjct: 350 AAEDSEQQSKI 360 >UniRef50_B0K509 Lipopolysaccharide biosynthesis protein n=14 Tax=Thermoanaerobacterales RepID=B0K509_THEPX Length = 315 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 45/353 (12%), Positives = 111/353 (31%), Gaps = 40/353 (11%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI-LPQKWTSAAVVTPPEPVQWQEL 82 EI L LI V+ + KKT++ V ++SF + + + ++ + Sbjct: 2 EEEISLRELIEVILKYKKTIIIVTLTATLVAAVLSFFVIKPTYEATTTLSVTDVTPATGF 61 Query: 83 EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLH 142 S T + + D + ++ ++ +S L +Y S + I ++ Sbjct: 62 FGSNTTVILPGKDSNLPTVQSDSIEKDLSLLLSSLLKYPNMSVEAFKEEVTNPIVLMNTV 121 Query: 143 RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKE 202 + + +K + + T++ + A + Sbjct: 122 KQLGLDPQKYTIENLKKQISVSVINNTNLITVTVKENDPKLAA------------KIADT 169 Query: 203 SLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQA 262 +N R + + + +KL + K + I+ + L+ Sbjct: 170 IAQNFRTYIIERNNRQTDKLIETLNKLITLQNDKIKEVTAELN----------------- 212 Query: 263 VKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFK 322 K + L + +++L++ K D+ L +++ Sbjct: 213 -KIQTNSQDKLLIEQKQKQLDLLKTTRDIMLEKYN---------MLELVKESELGNQSIL 262 Query: 323 YQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADH 375 +P K P K++ +I++ ++G MV+ V + + + Sbjct: 263 ITSKALIPDKPVAPKKSLNIIIAFILGLMVSIFIVFFMEYWKNTEPKRAVESK 315 >UniRef50_Q6AS84 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AS84_DESPS Length = 440 Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 56/429 (13%), Positives = 125/429 (29%), Gaps = 92/429 (21%) Query: 18 PLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPV 77 N+EIDLL L+ +W +K +M +V A L+ +LP + + + + V Sbjct: 26 QSPYFQNDEIDLLGLLHDIWDQRKFLMKIVLAVTLVAFLVLLVLPSTYQARMDIGQADSV 85 Query: 78 QWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKID 137 + L + ++K F S +E Sbjct: 86 ALVVPVATGQDLLTRSYRFG-----IVSQYLKSFDSWVT----------FRQGNREGAFT 130 Query: 138 ELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFT-APTSEEAQTVLSGYIDYIS 196 + +L V K S + +S+ + + L+G++ ++ Sbjct: 131 DEELQGLQGEFVGLSVQVQAPKPIKGKAVSDPSVLRISYRGGGDNTSVEQRLTGFVLFVD 190 Query: 197 TLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTK-------------------------- 230 + + ++ + K+ R Sbjct: 191 KKAAAYVEQEMEVVIQKAGKEINNKIGLLRHAASVDRGNRITRLLAQQKKDLEQVDMEIS 250 Query: 231 -------NQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFS-----------IS 272 + RL + IA + GIK P + + ++ + Sbjct: 251 ALKASVLRSRAVRLTRLQENYAIAESLGIKLPTSMDNISERNVSNLKVMVTDQTAMPVYL 310 Query: 273 LGADGIERKLEIEKAVTDVAELNGELRNRQYL---------------------------- 304 LG + + ++++I + ++D +L+ Sbjct: 311 LGTEVLAKRIQILREISDKKLYAQQLQPLLEKRELLLGSSELNGLRARKDDDAYIAELPG 370 Query: 305 -VEQLTKAHVNDVNFT---PFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR 360 + +L + + + + + K P KA+I+ + L+ +A LLR Sbjct: 371 LLSRLQQLDAYTDDLQGVHALQVYSAATGSGHKIKPKKALILATTVLLSCFLAVALALLR 430 Query: 361 YAMASRKQD 369 A+ R++ Sbjct: 431 TALQRRRES 439 >UniRef50_A6TJR1 Lipopolysaccharide biosynthesis protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TJR1_ALKMQ Length = 398 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 44/398 (11%), Positives = 115/398 (28%), Gaps = 51/398 (12%) Query: 25 NEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFIL-PQKWTSAAVVTPPEPVQWQELE 83 EI L LI L + KK ++ + L SF + + + V+ + + Sbjct: 2 EEISLRELIETLLKQKKLIIGITMIAVLTTGLFSFFMLEPVYETRMVLMASNFTERLQPN 61 Query: 84 KSFTK-LRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLH 142 + + + + + + ++ + ++ + D E + L Sbjct: 62 QLSGNGVEGMLESLSQYPAMTLDTYRQQVTAPRVMRATIEELGLEEDYDVERLARAISLE 121 Query: 143 RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYI---DYISTLV 199 +K + K + + F + ++E + S Y+ + Sbjct: 122 TLQNTNLITIKMQHGDPEKAALIVNTVGEKFVEFVSEKAQEHASQSSQYVVSQMEVEEAQ 181 Query: 200 VKESLENVRNKLEIKTQFEKEKLAQDRIKTK--------NQLDANIQRLNYSLDIANAAG 251 + ++L +R L + ++ D ++ L+ L ++ +A A G Sbjct: 182 LDDALVELREFLSQPRGVSELQMELDARLSQATSFKTQLTDLEIREPALQSAIQVAQAEG 241 Query: 252 IKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQL--- 308 I+L + K+E+ + +++ ++ Q +E+L Sbjct: 242 NTNSQIMINDNAGSQQ---ITLESTETLLKIELAEVQSNIQSFRTQITEIQDEIEELQVE 298 Query: 309 -----------------------------TKAHVNDVNF---TPFKYQLSPSLPVKKDGP 336 + V + + GP Sbjct: 299 LQDKKHQERLINQRVNIAENNYDAFVKKYEELRVAESSQIGDASITVISRAFPTTTPIGP 358 Query: 337 GKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMAD 374 K + V ++ ++G M+ + ++ + Sbjct: 359 RKTLNVAIAGVLGVMIGVFAAFFIEYWKTSGKEQEALE 396 >UniRef50_B6B6U1 Succinoglycan biosynthesis transport protein ExoP, putative n=2 Tax=Rhodobacterales RepID=B6B6U1_9RHOB Length = 714 Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 63/467 (13%), Positives = 141/467 (30%), Gaps = 94/467 (20%) Query: 3 SLNIKQGSDAHFPDYPLASPSNNE--IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 + P + + +E IDL L + LWR K ++ V A G + +F+ Sbjct: 1 MKQTPLNEASFPVQRPAPAETPDEDVIDLGALFATLWRGKWIMLLVTAAAIFLGGIYAFV 60 Query: 61 LP-QKWTSAAVVTPPEPVQW---------------------------------------- 79 ++TS+AVV + Sbjct: 61 AAVPQYTSSAVVMLETKQESVVDLRSVVSGLSGDYTEVNSELEVLQSRGLMSKVVDKLNL 120 Query: 80 ---QELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRS--SPYVMDQLKEA 134 E + + L + +++ +L + + + EE + V+ L+ Sbjct: 121 MGDPEFNGTLVEPSALGSLVWTVKSQIKSLLGLQKPAEEMPEELVEQLIRDSVVSTLQSK 180 Query: 135 KIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDY 194 + + ++ + ++ +A LY + +E+A T L+G + Sbjct: 181 ISVRNVPYTLVFEVTAETESARKSALIADTIVDLYILNQIEVKFDATEQATTWLTGRVAE 240 Query: 195 IST------------------------LVVKESLENVRNKLE-IKTQFEKEKLAQDRIKT 229 + + L+++R ++ KT E ++ + Sbjct: 241 LKAELETAEAKANEFNAGTALVSPEALQAQEVQLKDLRERIALAKTAEETAQVRYGALHA 300 Query: 230 KNQLDANIQ-----RLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIER--KL 282 + + +L L A+ A + Q ++ + Sbjct: 301 AESREDQAEISQDRQLQRLLAQADTAAGGAAFDTAFQRQLARAALDARRATQQLQTLVQS 360 Query: 283 EIEKAVTDVAELNGELRNRQ-------------YLVEQLTKAHVNDVNFTP-FKYQLSPS 328 E E + + + +Q Y + +L + + + Sbjct: 361 EAELSRQTARQSEDLITLQQLTREAEAVRLLYEYFLTRLKETSAQEGIQKADSRLLSRAV 420 Query: 329 LPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADH 375 +P++ P K++I+ +S ++G MV G VLL A + A + Sbjct: 421 IPLRPSAPKKSLILAMSGILGLMVGAGIVLLMEARRRGIRSAQELER 467 >UniRef50_B8GTU6 Putative uncharacterized protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTU6_THISH Length = 411 Score = 99.7 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 56/393 (14%), Positives = 131/393 (33%), Gaps = 36/393 (9%) Query: 15 PDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVV--- 71 A ++EI L++L L R + + V G++ + P + + + Sbjct: 19 SRREAAYYPDDEISLIDLWRTLVRRRSIIGFTVVGSLVLGIMFLIVKPDTYVFGSTIEIG 78 Query: 72 ---TPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVM 128 T + L+ L L + + + + + R S V+ Sbjct: 79 HYPTEAGSRELASLDTVENALSKLQDGYIPEALRRYMDEGHEESRLRVTARNPRGSNLVV 138 Query: 129 DQLKEAKIDELDLHRAIVALSEKMKAVDD--NASKKKDEPSLYTSWTLS---------FT 177 ++K + + R + S ++ +++ S L F Sbjct: 139 IEVKGTLDEGESILRVLNYASNQLIEDHRYLLDIQRQQLDSRLEQARLELAKYEDERMFR 198 Query: 178 APTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANI 237 E + + ++ L +E +E+ +L+ + ++++ + R + + Sbjct: 199 IQELERVRAIERTKLELSELLQQQELVESRIKRLDDMQRLLEQQIKEIRHSIEVASETRR 258 Query: 238 QRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISL------GADGIERKLE-IEKAVTD 290 + D ANA + Q L D ++++L+ I +A ++ Sbjct: 259 AAVANVGDPANAMTLLMIDSDIQQNRNRLATLDERLHIGLPNEFDELQKRLDDILRAQSN 318 Query: 291 VAE----LNGELRNRQYLVEQLTKAHVNDVNFTP--------FKYQLSPSLPVKKDGPGK 338 + EL + E+ T+A V + P+ ++ +GPGK Sbjct: 319 MKTEIEARESELERFRIDWERSTEAQRQTVRAVEARLNAARDTRVVTQPARSLEPEGPGK 378 Query: 339 AIIVILSALIGGMVACGGVLLRYAMASRKQDAM 371 +II+ LS +G M+ + + +++ Sbjct: 379 SIILALSLFLGLMLGVFAAFFAEFLRNAREETA 411 >UniRef50_B7RJK1 Protein-tyrosine kinase, putative n=3 Tax=Rhodobacteraceae RepID=B7RJK1_9RHOB Length = 716 Score = 99.7 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 53/467 (11%), Positives = 119/467 (25%), Gaps = 93/467 (19%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISF- 59 M LN+ S +F P + ++ ID ++ LWR K + V ++ Sbjct: 1 MDKLNMMNQSSQNFA--PTQADDDDSIDFGAMVGTLWRGKWIIALVTAIAVGLAAYYAYK 58 Query: 60 ILPQKWTSAAVVTPPEPVQ-WQELEKSFTKLRVLDLDIKIDRTEAFN------------- 105 + + S AVV +L+ + + + Sbjct: 59 VAIPLYRSTAVVILETQQDKVVDLQAVVGGFSGDATAVNTEVEVLRSRGLAGKVVDRLNL 118 Query: 106 ---------------------LFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELD---- 140 S ++ S + +++++ + L Sbjct: 119 IEDPEFNARLRKPGMIASLKARINGLISSDEAPTDFAPDSVLMQNRIRDNVVASLLGKVG 178 Query: 141 ----LHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 196 + ++ + ++ +A LY + +E+A LS + + Sbjct: 179 IRNITRSLVFNVTVESQSPVKSALIADTFVELYILNQIEVKFEATEKATEWLSNRVSELQ 238 Query: 197 ------TLVVKESLENVRNKLEIKTQFEKEKLAQDRIK---TKNQLDANIQRL------- 240 V + Q + ++ R + + RL Sbjct: 239 IELETAEKNVSGFTAQTQLVSVEALQALERQIKDLRDRISSAETANSVIETRLAGLLDAE 298 Query: 241 --NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDV------- 291 L AN A + + F A + ++ ++ + Sbjct: 299 TDEAKLKAANDAALDRIAAGGLDTEASQNLFGARYAALIERAQADLLRSNQQLNALRVSE 358 Query: 292 ---------------------AELNGELRNRQYLVEQLTKAHVNDVNFTP-FKYQLSPSL 329 E +Y + +L + + + + Sbjct: 359 ADVSNQVSKQGQDLITLQQLTREAEATRLLYEYFLTRLKETSAQEGIQKADSRLLSKAVV 418 Query: 330 PVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADHL 376 P P K I+ + ++G + VL R S + A + L Sbjct: 419 PGAPSAPRKTRIIAIWLILGAFLGSCIVLYREMKTSTFRTASDLERL 465 >UniRef50_C3KRX1 CPSC/CAPB subfamily ATPase n=5 Tax=Rhizobiales RepID=C3KRX1_RHISN Length = 633 Score = 99.3 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 59/394 (14%), Positives = 117/394 (29%), Gaps = 26/394 (6%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 M + P P ++ I ++ S + + +M+ F + Sbjct: 6 MLESQWSAAAKQSNPYRP--DSDSDFIRFADITSFIRQRIFLIMSCPFIGLLGAVFYVAT 63 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 +T+ + + EL + + L LD T+ L +K S+ + E Sbjct: 64 TDSIFTARTQILI--EPKIPELLQKQSSDINLSLDTSQVETQLAVLRSEKIASMVIDELG 121 Query: 121 LRSSPYVMDQLKEAKIDELDLHR-------AIVALSEKMKAVDDNASKKKDEPSLYTSWT 173 L P + L+ A +++ A + + E S T+ Sbjct: 122 LVDDPSFKPLHSPSLTVRLERIAGMAVETFAFNEVTQPPTAPPPSTAPDAAETSELTAEL 181 Query: 174 LSF-TAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEK------EKLAQDR 226 L F E + G + + + ++ +L K E+L Sbjct: 182 LEFQRRRRVVETFSQGLGVQRVGVSYAIDITFNSLDPELAAKVANATAGAFVREQLETRA 241 Query: 227 IKTKNQLDANIQRLNYSLDIANAAG--IKKPVYSNGQAVKDDPDFSISLGADGIERKLEI 284 + ++ +R+ N A ++ + V P I G + E Sbjct: 242 AAAREGVEWLEKRIEEVRVQMNLATQITQEFRAKHDYRVGRQPGAPIVDGQVAPSGEGES 301 Query: 285 EK-AVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPF-----KYQLSPSLPVKKDGPGK 338 + + EL + + E L N VN PF + + P+ P Sbjct: 302 TTPSGPTLEELEVTAETYRKMYESLLAGFTNSVNQQPFLIADARVITPATRPLAPSYPRT 361 Query: 339 AIIVILSALIGGMVACGGVLLRYAMASRKQDAMM 372 +++ L L G M G R+ + + Sbjct: 362 KLVLALGVLAGLMAGVGLAFARHTLDRTIRTPRQ 395 >UniRef50_Q161P5 Chain length determinant domain protein n=2 Tax=Roseobacter RepID=Q161P5_ROSDO Length = 689 Score = 98.2 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 57/442 (12%), Positives = 128/442 (28%), Gaps = 84/442 (19%) Query: 12 AHFPDYPLASPSNNE-IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAV 70 +P ++ + ++ L +LW K +M F ++ P +T+ A Sbjct: 4 TPRNTFPEQPDQDDSPVGIVALWRLLWGNKLRIMVPAFILTLLTAILVLRAPDTYTAEAQ 63 Query: 71 VTPPEPV-QWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMD 129 + + E + + ++ L + + L + P V Sbjct: 64 MLLARGNLEIVEFDSA----GDAEVTQGAIVNALTILGSRSLALQVIERLDLTNDPEVNP 119 Query: 130 QLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLS 189 + D + + + ++ P L T E++ + + Sbjct: 120 NIAILADDPEAEIYPDSIVRQFALDWLASITQVSILPGT-NVIVLRATTTVPEKSAAIAN 178 Query: 190 GYIDYISTLVV---KESLENVRNKLEIKTQFEKEKLAQDRIKTKN--------------- 231 Y+D + + E L + + +L D+ ++ Sbjct: 179 AYLDAYLDYQLQRGQSETERAAGALRTRVNELRLRLEADQALLQDYSASATSTAMESTSD 238 Query: 232 ------QLDANIQRLNYSLDIANAAGIKKPVYSNGQ-----AVKDDPDFSISLGADGIER 280 + A ++ SLD NAA G A D + + + + R Sbjct: 239 LAGEAVNVRARLESTQTSLDQLNAALAVLDATPEGDFEAVRAAVDQNETLLRMERTNLGR 298 Query: 281 KLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVN-------------------------- 314 + E D+ L ++ + EQL A N Sbjct: 299 SVGAETVAQDIETLRAAVQAERSRFEQLNAALRNGLVAIEERIAEANAFMVGLRQLEVEV 358 Query: 315 DVNFTPF---------------------KYQLSPSLPVKKDGPGKAIIVILSALIGGMVA 353 + + + + P++ D G+ +V ++A++G + Sbjct: 359 ETTSQVYESSLARLKELSIQTGLRDAGAQILATAEAPLRTDAQGRRRMVAIAAVLGLFIG 418 Query: 354 CGGVLLRYAMASR-KQDAMMAD 374 VL+R A R ++ + +A+ Sbjct: 419 IAHVLVREAANDRVRRVSELAE 440 >UniRef50_Q2CAF1 Putative uncharacterized protein n=2 Tax=Rhodobacteraceae RepID=Q2CAF1_9RHOB Length = 719 Score = 97.0 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 65/453 (14%), Positives = 128/453 (28%), Gaps = 88/453 (19%) Query: 11 DAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLIS-FILPQKWTSAA 69 P S +++EIDLL L+ LWR K ++ AG+ + + K+ + Sbjct: 15 TPAPAPVPANSVADDEIDLLALLRTLWRGKWLILLAALLALAAGVYYATQVAEPKYAATT 74 Query: 70 VV-TPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKK-------------FQSVS 115 + Q + E + + D + + + + + F + Sbjct: 75 AIALQVNNPQVVDFESVMSGVSTDDTSMNTEVEVIRSRGLLEQLVDRLDLLEDPAFNTSL 134 Query: 116 LLEEYLRSSPYVMDQLKEAKID-----------------------ELDLHRAIVALSEKM 152 EE L + + EA + I+ + Sbjct: 135 RPEEGLSLTALLAPLTGEAPDAAAASGEAAALNATVDQVRDALGASVQRDTFILNIRATT 194 Query: 153 KAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKE---------- 202 +A LY ++ +EEA LS + + + ++ Sbjct: 195 GDPQKSALIANTLAELYIEDQIAVKFQGTEEAVAWLSDRVTALEDELRQKEDQIAALRAE 254 Query: 203 -----------SLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAG 251 ++ + T+ E++ + + + +L +AN A Sbjct: 255 SELVSAEALEGLNRQAKDVRDRLTELEQQAAREAARLAELEAAIERGDTAEALALANDAT 314 Query: 252 IKKPVYS-NGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYL------ 304 +++ F + ++ + A L L Q Sbjct: 315 LRQLAQRVEAGDEAAGELFERRAETVLARARNDLARTEAQAASLETSLARLQTQTEAQSA 374 Query: 305 ----------------------VEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIV 342 + +L + V LS + P + P KA I Sbjct: 375 ELAQLQQLEREAQATRTLYETFLARLKETTVQRGLQQADARILSYATPGEMVAPRKARIA 434 Query: 343 ILSALIGGMVACGGVLLRYAMASRKQDAMMADH 375 L+ ++G MV G VLLR AM S + + Sbjct: 435 ALALILGLMVGTGIVLLREAMRSGFRTPEELEA 467 >UniRef50_A4C494 Exopolysaccharide biosynthesis protein, putative n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C494_9GAMM Length = 686 Score = 97.0 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 52/437 (11%), Positives = 124/437 (28%), Gaps = 83/437 (18%) Query: 22 PSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQE 81 P+ +EIDL +L+S+ W K ++ V GL I +P + + V Sbjct: 7 PAEDEIDLADLLSLFWIKKWFILVVTGIVFAIGLSIVDRMPNIYKATTTVMVKGSKANNP 66 Query: 82 LEKSFTKLRVLDLDIKID-----RTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKI 136 L+ + + D+ ++ + + L +Y + D L Sbjct: 67 LQSLVPGMGSANDDLDTTIKLLKSSQFAQTIVDSLSIPATLNQYASDFTWSGDDLLTHLS 126 Query: 137 DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 196 + ++ +S + + +A + + P S ++ ++ I + Sbjct: 127 INIVSKTNLLEISFESQDAKFSAVVANQIAQAFMQYQTDLMQPHSNKSDDWINSKIQGVK 186 Query: 197 TLV-----------VKESLENVRNKLEIKTQFEKEKLAQDRI------------------ 227 + +++ ++ + + I Q + R Sbjct: 187 DSLEVEEAKLMAFRQSQNVVDIASNVTIAKQEISLLYRELRELNLQFDLLKRFSQKVSLA 246 Query: 228 -----------------------KTKNQLDANIQRLN------------YSLDIAN---- 248 + K A + ++ +L IA+ Sbjct: 247 NNDLNALLVINEITNAPIIRELVQQKASQQAQLSQIKLRYLDKHPTFKSMALKIADTEQQ 306 Query: 249 -AAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQ 307 ++ + + + ++ L +E A+ E R+ ++ Sbjct: 307 LEKEVEAFIVAMTKNKQEVELQISELELKQQNANDLLESAIIQEQEFKKIQRSVDANIKL 366 Query: 308 LTKAHVNDVNFTPFK---------YQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVL 358 L K P+ P KA+I +S ++G +++ V+ Sbjct: 367 LESLSAKQKETELLKDITDSSDIIVVDPAITPISPIRPKKALIAAVSCVMGFILSIVLVI 426 Query: 359 LRYAMASRKQDAMMADH 375 L + A + H Sbjct: 427 LLHFFADAHRRYRQIAH 443 >UniRef50_Q39TL3 Lipopolysaccharide biosynthesis n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TL3_GEOMG Length = 409 Score = 96.6 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 39/372 (10%), Positives = 114/372 (30%), Gaps = 39/372 (10%) Query: 29 LLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTP-----PEPVQWQELE 83 LL+ +V+ + + + A A ++ + +LP +T+ +++ P Sbjct: 21 LLDFAAVIIKHWRLTACITLAAALVAVIYTLMLPNLYTARSMILPLEDDREGVGAALGQL 80 Query: 84 KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY----------------------- 120 + + L + + L++ + Sbjct: 81 AGLAGVGRIGLGNPSKADVYLAMLNGETIRDPLIDRFRLLEAYEAKYRTEAYGALDRNVA 140 Query: 121 --LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTA 178 + ++ + + A + E + + +Y L+ Sbjct: 141 VTVGKKDGIITIAVDDRDPRRAAEMANAYVEELGRLANRLNMASAGNDRMYLEKRLASAR 200 Query: 179 PTSEEAQTVLSGYIDYIST-LVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANI 237 +A+ L + V ++ + +++ Q +++ +++ + Sbjct: 201 VDLAKAEDALKAFQSKNKAVSVSDQAKATIDGVAQLRAQLAAQEVQLSAYRSQFTDSSQE 260 Query: 238 QRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGE 297 R + + A I + + G + ++ + E E Sbjct: 261 VRTSKAAIGRLQAQIARLEGNGGG----GSAIPSVGSMPQLGQQYLRLMRDFKIQETMVE 316 Query: 298 LRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGV 357 L +QY V ++++ + +PF+ +P KK P + +IV+++AL + + Sbjct: 317 LLAKQYEVARMSEVK----DVSPFQVLQVAKVPEKKSKPHRTLIVLVAALTAFLCSIYLS 372 Query: 358 LLRYAMASRKQD 369 + + + Sbjct: 373 FVLEHLDRMSEQ 384 >UniRef50_Q2C5X1 Chain length regulator (Capsular polysaccharide biosynthesis) n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C5X1_9GAMM Length = 718 Score = 96.3 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 57/402 (14%), Positives = 121/402 (30%), Gaps = 54/402 (13%) Query: 17 YPLASPSNNEIDLLNLISVLWRA----KKTVMAVVFAFACAGLLISFILPQKWTSAAVVT 72 + S + EI+++ VL R T+ + G I++ L + Sbjct: 76 FISQSTAKTEIEIIKSRMVLGRTVDNLNLTLYSSPIFTPIIGKKIAYFLGNVPEIKVSLL 135 Query: 73 PPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLK 132 KS + D + F+ + + E + ++ Sbjct: 136 ITPEND----NKSSGNSEGNYIVKISDDKKGLYDFLNEDNKLIFSGEVGKLENKNGYEIL 191 Query: 133 EAKIDELDLHRAIVALSEKMKAVDDNASKKK--DEPSLYTSWTLSFTAPTSEEAQTVLSG 190 +K+D + I+ + + S+ + LS + +L+ Sbjct: 192 ISKLDGKSGQKFIIKKLNRYNTISSLRSRLSIMEPGKDTGILYLSLKGNNPLRMEAILND 251 Query: 191 YIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAA 250 ++ E +N+ + + + + K +LD +LN +++ Sbjct: 252 IVN-------NELTQNIDHNALEAAKSLVF-IENQLPEVKRELDIAENKLNTFKVSSDSV 303 Query: 251 GIKKPVYSNGQAVKDDPDFSISLGAD------------------------GIERKLEIEK 286 + S + I LG ++RK+E+E Sbjct: 304 DMDYQAKSTLNILASVESKLIDLGFKESELSKLYTKEHPAYVALLQQKRSLLKRKVELEN 363 Query: 287 AVTDVAELNGELRNRQ-----------YLVEQLTKAHV-NDVNFTPFKYQLSPSLPVKKD 334 V+ + + N + L+ ++ + + + S Sbjct: 364 EVSTMPKTNQRIITLNRDVMAAQHIYMSLINKVQQLRISQASTVGSVRLIDSAEASPIPI 423 Query: 335 GPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADHL 376 P KA+IV+L+ L GGM++ VLL+ S D L Sbjct: 424 KPKKALIVVLATLFGGMLSIVIVLLKKNFISGIDDPRQISSL 465 >UniRef50_A0NNU3 Putative MPA1 family protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NNU3_9RHOB Length = 636 Score = 95.9 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 54/356 (15%), Positives = 102/356 (28%), Gaps = 31/356 (8%) Query: 29 LLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTK 88 + VL R + + A ++ K+ + + + + + T Sbjct: 23 FFAMFKVLRRNWLWLTLAMLLGLGAAYQALQVIQPKFAARSTIILANVE--TRINPTETT 80 Query: 89 LRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVAL 148 + D + TE L +F E L S Y L + + + A+ Sbjct: 81 IENSDTSLIHVETEIDLLRSVEFARKVASELNLISDSYFNPYLSATETPVPNQDQQFEAV 140 Query: 149 SEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVR 208 +M S + + + P + A + + ++E E V+ Sbjct: 141 LVRM-----LDSYTVERRGESLALDIRVRHPDAGMAAQLANTLSKTYIESSLREKKEVVQ 195 Query: 209 NKL-----------------EIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAG 251 + + E + D ++L A + RL + +A Sbjct: 196 SSISELRDRIALLGGRLSEMEARLAALIRDNELDDTSLGDELRAELGRLTSIMSLAGDQN 255 Query: 252 IKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKA 311 ++ V + + ER L+ +L Q LVE+ Sbjct: 256 ------ASSIRVNEAELRLAEVEKKLEERTRAELTQSKLQRSLDADLARYQALVERRNAL 309 Query: 312 HVNDVNFTP-FKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASR 366 P + S P+K P + I+ L G +V VLLR R Sbjct: 310 ETQVDFLQPDARQVTVASAPLKPATPNRIAILALGLAGGLIVGLAFVLLRELFDRR 365 >UniRef50_Q0AW94 Capsular polysaccharide biosynthesis protein-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AW94_SYNWW Length = 435 Score = 95.5 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 57/431 (13%), Positives = 124/431 (28%), Gaps = 72/431 (16%) Query: 15 PDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI-LPQKWTSAAVVTP 73 + P EIDL ++ + + K T++AV + SF L + ++ VV+ Sbjct: 3 GNDPSYYNDYEEIDLRDIFKTINKWKHTIIAVTLICVLLSGIFSFFVLDPVYEASTVVSI 62 Query: 74 PEP----------------VQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLL 117 + + E+ + + L Sbjct: 63 YQAQLNREKESSNDITDTVNELGEIPYMSAVSCEQQVKSPAIIEAVIKKLQLPYTRNGLK 122 Query: 118 EEYLRSS--PYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 175 + + + D + L E+ + +K+K SL Sbjct: 123 SSIKTQQVQNTNLIIITVSNNDPELAAKIANTLREEFILHINKINKRKMAQSLEIMEKEW 182 Query: 176 FTAPTSE--------EAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRI 227 E + + S I+++++ + K+ + + + + Q+ I Sbjct: 183 LQKEEVELDVVSEKLKEHKLQSRSIEFLNSQLGKKREDLINYQSWLAKAEIDRASQQEGI 242 Query: 228 KTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGI--------- 278 K QL I ++L N A P G +KD S + + Sbjct: 243 K---QLQETIAHTPHTLTTVNTANGILPADLQGIDIKDGTVSSEQINMNYTSLIEAYNSK 299 Query: 279 ------------ERKLEIEKAVTDVAELNGELRNRQY---------------------LV 305 + + EI + ++ +L EL Q + Sbjct: 300 TTALAELTVQINKTRQEIARQEKEILDLEAELIINQLGEKKLQNEVSRRESVVDLLSSKI 359 Query: 306 EQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 +L ++ +P P K + + ++A++G M+A G+ L + Sbjct: 360 AELKMTESINLADNNIITVSEAMVPEAPVKPNKMLNIAIAAVLGLMLATFGIFLIEYLRE 419 Query: 366 RKQDAMMADHL 376 + + + Sbjct: 420 NGTNKSEPEDM 430 >UniRef50_A4EII1 Protein-tyrosine kinase n=1 Tax=Roseobacter sp. CCS2 RepID=A4EII1_9RHOB Length = 654 Score = 94.7 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 50/385 (12%), Positives = 119/385 (30%), Gaps = 44/385 (11%) Query: 29 LLNLISVLWRAKKTVMAVVFAFACAGLLISF-ILPQKWTSAAVV---TPPEPVQWQELEK 84 + ++ +W K + V SF + ++ + A + T EP + + Sbjct: 28 IGAMLKAVWHGKWLIFWVTVLMITLSGYYSFRVASPQYVATATLQLDTAAEPGGSLQQQP 87 Query: 85 SFTKLRVLDLDIKIDRTEAFNLFIKKFQ--SVSLLEEYLR-------------------- 122 + + + + I + S L YL Sbjct: 88 TVDEAALNTKVALVTSDAVLTQVIAELDLLSDPELNRYLTAQSPLSLRNLRTQVRHLLAG 147 Query: 123 SSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPS----------LYTSW 172 ++ DQ +L ++ + + D Y + Sbjct: 148 TTTQTPDQAAVHDKTIQNLRAKLMVSRRPNTYILHIVVRSSDPEKAALLANTTAASYLAH 207 Query: 173 TLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQ 232 T + A +EAQ L + + + + + ++ + Q ++ Sbjct: 208 TQTLDAQARDEAQVWLQSRVTTLRSQLETQEMQIAALIATAQLQQDRGLDTLSAQVLGAD 267 Query: 233 LDANIQRLNYSL-DIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKA---- 287 + R +L +IA+ +G + Q D + + + +L + A Sbjct: 268 QNLTEARNTLALLEIASDSGSARNRAEIAQMHNKISDIASL--KERLSAQLSAQSAGLAQ 325 Query: 288 -VTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSA 346 + + + Q + +L + + TP +++P+ GP K +I+ ++A Sbjct: 326 LHQLQLQTDATRQLYQMFLGRLHENRMQQGLGTPQSLRVAPATHGVYIGPRKTLILTIAA 385 Query: 347 LIGGMVACGGVLLRYAMASRKQDAM 371 L+G + +++R+ DA Sbjct: 386 LLGIAIGVMVIVVRHNTRKGIIDAR 410 >UniRef50_D0MGZ9 Lipopolysaccharide biosynthesis protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MGZ9_RHOM4 Length = 415 Score = 93.9 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 47/362 (12%), Positives = 115/362 (31%), Gaps = 19/362 (5%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQEL 82 ++EI LL+L V+ R ++ ++ V G++++ + P+ + + A + P Sbjct: 29 EDDEISLLDLGVVIARQRRVIVVSVLVALVVGVVVALLSPKSYVAEAKLAPSSTGSTG-- 86 Query: 83 EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLH 142 + + LR L + D + +++ S L R + Y+ ++ + + E Sbjct: 87 -GALSALRSFGLSLGEDEIVSPSVYPDIVGSPDFLLALARDTFYIAEEGRPMTLVEYYGR 145 Query: 143 RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKE 202 R + + ++ + + S L EA L + S Sbjct: 146 R---SWLSYLNPLNWLSGDEGAPVRDLYSGALILPTEEEYEAIRELRE-VLSASEKAGGG 201 Query: 203 SLENVRNKLEIKT--------QFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKK 254 L+ + ++ E+ + N++ R + A ++ Sbjct: 202 LLKEGPGVITVRAETDDPYLSAAIVERAIRHLQAAINRIKTEKARQDLEFLERKFAQVEA 261 Query: 255 PVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVN 314 + + D + + + ++E + E Q ++ Sbjct: 262 ELRQAENELARFLDANRNPQTAQLRAEMERLQRQVSFKEQLYRELQLQKTQAEIQVQK-- 319 Query: 315 DVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMAD 374 P P + G + +IV+L +G V G + + ++ D Sbjct: 320 --EAPVLSIVQPPVPPDEPSGTSRKLIVLLFLFLGVFVGLGLAFVNHWLSRPPSDDEERR 377 Query: 375 HL 376 + Sbjct: 378 KV 379 >UniRef50_B3ELK8 Lipopolysaccharide biosynthesis protein n=1 Tax=Chlorobium phaeobacteroides BS1 RepID=B3ELK8_CHLPB Length = 334 Score = 93.6 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 52/367 (14%), Positives = 113/367 (30%), Gaps = 61/367 (16%) Query: 1 MSSLNIKQGSDA-HFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISF 59 M + N+++ S + P+ E L ++ +V+ + V+ V + L + Sbjct: 10 MKNQNMRESSKSGRDSSQPVQGEKGVETSLDDIRAVIVSNRWIVVGVTLFVTLSAALYAL 69 Query: 60 ILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEE 119 + + A+V D K F L + F + +E Sbjct: 70 FAQPVYLTGALVR---------------------FDGKEGDRALFMLHSQTFLEDIIRKE 108 Query: 120 ------YLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT 173 + V K + D + V L+EK+ L+ Sbjct: 109 ELLPLLFSDQWDSVHHSWASGKGEIPDPEKGAVVLAEKLIIKKRKD--------LFNLLF 160 Query: 174 LSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQL 233 + P A +++ + ++ V KE+L + + + + Sbjct: 161 IGMEHPDPYAAADLINRVLIGLNEYVRKEALAKALLLQAYADRQLYIHDSTLADRFASLG 220 Query: 234 DANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAE 293 +A+ RL + G +K ++ S SL A +L +K +D Sbjct: 221 EADAVRL------SGKNGDRKAASEVSGFLRSQLILSSSLEA---RARLMAKKQESDDVI 271 Query: 294 LNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVA 353 + ++ ++ ++ A + N PGK+ +++L + G Sbjct: 272 MRADIHADEFALKIYDMATAYEKNA----------------KPGKSAVIVLGFIFGMFSG 315 Query: 354 CGGVLLR 360 +R Sbjct: 316 LCIAFVR 322 >UniRef50_A3N2K1 Putative uncharacterized protein n=3 Tax=Actinobacillus pleuropneumoniae RepID=A3N2K1_ACTP2 Length = 292 Score = 93.2 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 54/362 (14%), Positives = 101/362 (27%), Gaps = 97/362 (26%) Query: 36 LWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLD 95 L R T++ G +S + Q W + A PP+ F+ L+ Sbjct: 2 LLRYLFTLIISTAVGVAGGFGLSSLDTQTWKATAEFEPPKVSTLGNYYTLFSTYTFLNGG 61 Query: 96 IKIDRTEA-------------------------FNLFIKKFQSVSLLEEYLRSSPYVMDQ 130 + +N F + S +L E+L + V Sbjct: 62 DGVSYNVIADDKGSLSLAPEIGRKAEDSATLGSYNEFKRNLISTDVLVEFLTQTETVK-- 119 Query: 131 LKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSG 190 +L ++ + A+ K +LS + EEA +L+ Sbjct: 120 ----LKAQLTHQPIVMTAQSLAEQFVFQAATKTQPFD-----SLSVRSANPEEAYKLLND 170 Query: 191 YIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAA 250 +I + + + + K + Q K AA Sbjct: 171 FIAFANQQTKQTLNAELVAKWKNLFQQIKS----------------------------AA 202 Query: 251 GIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTK 310 IK G + KL + ++V + Sbjct: 203 DIKLGAIQQGNQIATQD----------WNGKLNLMRSVRPL------------------- 233 Query: 311 AHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDA 370 D T F++ +PS+P+ D P + +++ AL G ++ V + + DA Sbjct: 234 ----DDQLTAFRFVKTPSVPLTPDTPNPTLWMMIGALAGLLLGMVIVSTMGLLRKKPADA 289 Query: 371 MM 372 Sbjct: 290 EQ 291 >UniRef50_Q2S4Z4 Chain length determinant protein n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S4Z4_SALRD Length = 435 Score = 92.8 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 65/433 (15%), Positives = 125/433 (28%), Gaps = 88/433 (20%) Query: 1 MS-SLNIKQGSDAHFPDYP--LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLI 57 MS S + P P +EI L+ LI L R + ++ V G+L Sbjct: 1 MSDSESTPSRDGGPRGSRPGRRMPPPEDEITLMELIVTLSRGRGLIVLSVVGIGLLGVLY 60 Query: 58 SFILPQKWTSAAVVTPPEPVQWQELE---------------------------------- 83 S P ++T+ + V Sbjct: 61 SVATPSRYTAESKVIREAGEGGGGPSLPSGIGGIAGGLGIDIGGGGSVGLSPASYPEIAT 120 Query: 84 KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDEL---- 139 +L V F+ + + S + + + L Sbjct: 121 SREVRLAVARDTFYFPSLGRRTTFVDYVNRPPGTLDQILSYTVYLPWTVKGALGSLIGSG 180 Query: 140 ---------DLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW-------TLSFTAPTSEE 183 I E+ KA+ S + T+S ++ Sbjct: 181 QGKRSAGTDSTGTLIYPTEEEEKAISALGEMVSASVSESGALEGGSGLMTVSASSGNPGL 240 Query: 184 AQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYS 243 + + +I+++ T V + E R L + ++ Q+ +N+L ++R Sbjct: 241 SARLNERFIEHLRTRVRELQTEKTRRNLRFVEK-RFGEVKQELDAAENRLVQFLERNKGV 299 Query: 244 LDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQY 303 L AAG K + S + ++ + F L + V + +L+ Q Sbjct: 300 L----AAGSKPQLESRRERLRREVGFKEQLYSQM----------QKQVTQTRLQLQKEQ- 344 Query: 304 LVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAM 363 P+ P + P + + V+LS +GG+ G R A+ Sbjct: 345 ---------------PVVTVAEKPAPPAEPSAPNRTLNVVLSLFLGGLFGVGATFFRSAI 389 Query: 364 ASRKQDAMMADHL 376 S++ D + + Sbjct: 390 QSQEDDGEAQEQI 402 >UniRef50_A6VA35 Chain length determinant protein n=7 Tax=Pseudomonas aeruginosa RepID=A6VA35_PSEA7 Length = 455 Score = 92.8 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 54/408 (13%), Positives = 123/408 (30%), Gaps = 91/408 (22%) Query: 10 SDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAA 69 D P + P E+DL+ L LW AK V ++ +L ++ + + Sbjct: 9 KDVGMPSSQYSGPERPEVDLVQLFRQLWGAKWLVASITGVGLAVAVLYLLLVVPTYEVSV 68 Query: 70 VVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMD 129 ++ P + + + + EA + + + S EY ++ P Sbjct: 69 LLRPIQTKALEAVNAR--------DIYALTPREALDRVASELSAYSGRFEYFQAHP--ER 118 Query: 130 QLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLS 189 + K + L +A + ++ +K + + + + + P + +L+ Sbjct: 119 FQQLNKDNGLSAEQAFWKFNLSAFSMKQADLQKDPQATPFVQIFMQY--PKGMDGAGILN 176 Query: 190 GYIDYISTLVVKESLENVRNKLEIKTQF-------------------------------- 217 + ++ LE+++ +++ + QF Sbjct: 177 DMVSRTIDSERRQILEDLQARVDSRLQFLAQDIEGKRASYQASKQGRIARLLEADNIRRA 236 Query: 218 -EKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNG--------------QA 262 +++L R + K D+ IQ+LN ++ I+ GI KP Sbjct: 237 GLEDELKALRGRLKMVRDSRIQQLNEAIQISTRLGIVKPTTPGALGEVGLDGSRSVFRTE 296 Query: 263 VKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTK------------ 310 V + +G D + + + + Q ++QL Sbjct: 297 VNNQQIPLYFMGVDALTAERDTLLKRKGDDFTEPRVAAIQQELKQLENNREVQYLQARQG 356 Query: 311 --------------------AHVNDVNFTPFKYQLSPSLPVKKDGPGK 338 V D+ + ++P++ P K Sbjct: 357 EERFFDDIEKLRGEQARLQTLKVGDLKIELVRVDQRAAMPLQPIKPRK 404 >UniRef50_Q7NZZ7 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NZZ7_CHRVO Length = 401 Score = 92.4 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 55/400 (13%), Positives = 119/400 (29%), Gaps = 28/400 (7%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 MS +K+ N+EIDL L+ L R + ++A L + + Sbjct: 1 MSVDQMKEIQIQS-----SQPTQNDEIDLTALLVKLARQRNWIIACTILCGTVTLCYALL 55 Query: 61 LPQKWTSAAVVTPPEPVQWQ-ELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEE 119 +T+ + PP+ +L+I QS ++ ++ Sbjct: 56 AKPIFTAQTSIMPPQQQSSGMSALLGQLGGLAGAAGGISGLKNPNDLYIGMLQSRTVADK 115 Query: 120 YLRSSPY---VMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 176 + + E L + V+ + + AV + + + +L ++ Sbjct: 116 LIARFKLQSRYEQETVEGARKTLQQKSSFVSGKDGLIAVAVDDTDPQFAATLANAYVDEL 175 Query: 177 TAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEI-KTQFEKEKLAQDRIKTKNQLDA 235 A A T + + + + + ++ KTQ + + Sbjct: 176 KALNRSLAVTDAAKRRLFFEQQLKDTKAQLAAAETDLRKTQEATGLILPEGQLPAIVSSV 235 Query: 236 NIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERK-------------- 281 R + +K + A L + + Sbjct: 236 TQLRATIAAKEVQLEAMKSFATAQNPAYIKAQQELSGLHEQLAKLETGQRGNGDLLVPTG 295 Query: 282 ---LEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDV-NFTPFKYQLSPSLPVKKDGPG 337 + + + EL + + L +Q A +++ + + + + P K P Sbjct: 296 KFAQSGLEYMRKLRELKYQETIFELLSKQYELAKIDEAKDSSLIQVLDTAVPPELKSKPK 355 Query: 338 KAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADHLV 377 +++IV+L L G M+ LLR S L+ Sbjct: 356 RSLIVMLGLLGGLMIGILSALLRDLFQSEHSQQRRRQLLL 395 >UniRef50_D1PXM6 Chain length determinant protein n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PXM6_9BACT Length = 346 Score = 92.4 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 44/341 (12%), Positives = 91/341 (26%), Gaps = 9/341 (2%) Query: 27 IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSF 86 IDL + +W+ KK + + G +P+ + + P S Sbjct: 10 IDLTKIAQSIWKHKKIYLITLPIAFVLGCFYVLSIPRYYNCQVKLAPETANTNLGNLGSL 69 Query: 87 TKLRVLDLDIKID---RTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHR 143 +D+ K+ + L+ S+ D E Sbjct: 70 ASSVGIDITGKMGHNLDAISPELYPDLMSSIDFRVSLFPVQIKTQDNRFEDNYYTYLERH 129 Query: 144 AIVALSEKMKAVDDNASKKKDEPSLYTSWTLS--FTAPTSEEAQTVLSGYIDYISTLVVK 201 ++ KK+++ + +S + + ++ + Sbjct: 130 RKSPWWAVIRGKISEILKKEEKSTYNGEKKVSPFLLSKRQHDIAGIIGENVKCAVDKKTN 189 Query: 202 ESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQ 261 +V ++ + + ++ R + + K Q Sbjct: 190 VISIDVEDQDPLVAATIADSVSSRLQTFITNYRTQKARNDLAYVKGLYIEAKSLYEKARQ 249 Query: 262 AVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPF 321 D ++ L + K E + + N QY Q F Sbjct: 250 KYGAYGDANMDLLLQSYKLKQEDLENDMQLRYNNYTALAMQYTAAQAKVQE----KTPAF 305 Query: 322 KYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYA 362 S S+P+K GP + IIV L+ + V + A Sbjct: 306 TTLQSASVPIKPTGPKRMIIVAFVLLLTFIGTSLYVFQKDA 346 >UniRef50_A5FN30 Lipopolysaccharide biosynthesis protein n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FN30_FLAJ1 Length = 357 Score = 92.0 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 54/359 (15%), Positives = 117/359 (32%), Gaps = 28/359 (7%) Query: 23 SNNEIDLLNLI-------SVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPE 75 N+EI L L+ + L K ++ A AGL SF+ +T+ + Sbjct: 7 ENDEISLKELLLKISDWYNYLLSQWKIIVLAGIFGALAGLTYSFLKKPIYTATLSFVVED 66 Query: 76 PVQWQELEKSFTKLRVLDLDIKIDRTEAF--NLFIKKFQSVSLLEEYLRSSPYVMDQLKE 133 L + L LDI + + F + + F+S S++E+ L + + +++ Sbjct: 67 EKSTGGLGGALGLAGSLGLDIGGNGSSIFSGSNLTELFKSRSMVEKTLLTPVHYNNKVIS 126 Query: 134 AKIDELDLHRAIVALSEKMKAVDDN-------ASKKKDEPSLYTSWTLSFTAPTSEEAQT 186 + +H+ +++ K + ++ S+ + + + AQ Sbjct: 127 LAEMYIQIHKWRDKWNDQPKFKNIKFLPNLNRDYFTRENDSILGVIYRNLSQNSLSVAQK 186 Query: 187 VLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDI 246 I I E + + Q K + K + +D +++ Sbjct: 187 DKKNAIISIDVSSTNELFS-LYFCEALAKQVGKFYVETKSKKARMNMDILEHQVDSVRSE 245 Query: 247 ANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVE 306 N A I +N +P + + + N + Sbjct: 246 LNGA-ITSVAVANDNTFNLNP---------ALNVRRAPSSRRQVDVQANTAILTELVKQS 295 Query: 307 QLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 +L K + + P LP+ K+ GKA I+ +++ + +++R Sbjct: 296 ELAKVTLRK-ETPLIQVIDRPILPLSKEYFGKAKGFIIGSILASFIIMIILIVRRLFKQ 353 >UniRef50_C1F294 Chain length determinant family protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F294_ACIC5 Length = 759 Score = 92.0 bits (226), Expect = 4e-17, Method: Composition-based stats. Identities = 54/471 (11%), Positives = 123/471 (26%), Gaps = 95/471 (20%) Query: 1 MSSLNIKQGSDAH-FPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISF 59 M +L+ ++ S + + I+L +L + + K ++ V A L Sbjct: 1 MDTLDPQRQSGSAIASADEKTVAPQSTINLSDLRKLFLKRKWIILICVLAGIGVALYHVE 60 Query: 60 ILPQKWTSAAVV--------------TPPEPVQWQELEKSFTKLRVLDLDIKI-DRTEAF 104 ++ + + V Q ++ T+L ++ + + + Sbjct: 61 TATPQYEAVSSVSIDMNKSTGVELTSLASSSGGLQSQDRVETQLHIMQSNTIAWNVIKTL 120 Query: 105 NLFIKKFQSVSLLEEYL------RSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDN 158 L+ K S + +++ K A L + + + + Sbjct: 121 KLYNKPPYSGVFKKAGYHGTVTPSQKLALLNTFKGATQVVLVPETDLAEIHFQNQNPKVA 180 Query: 159 ASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFE 218 + + Y WTL T LS I + V K + V+ + E Sbjct: 181 QEAANEIVNAYQDWTLRAHFETMTRISDWLSQQIISLRESVNKSQNDLVQYQREHNLLSV 240 Query: 219 KEK-----------LAQDRIKTKNQLDANIQRLNYSL--------DIANAAGIKKPVYSN 259 ++ + + + R +L +A + Sbjct: 241 GQQGSSLVDANLETINSQLAQAEADRIVKEARYKMALTRNPDLLVSVAPNTVLTSLRSQE 300 Query: 260 GQAVKDDPDFSISLGADGI----------ERKLEIEKAVTDVAELNGELRNRQYLVEQLT 309 + D G + + +I K +T++ + + + L Sbjct: 301 ANLLVQQADLQSRFGPRYPKLEEVRQQLKQVRSDINKEITNLTQRFKAEYDAAVQTQNLL 360 Query: 310 KAHVNDVNFTPFK--------------------------------------------YQL 325 +A + + FK Sbjct: 361 EARLENTKQQAFKQNESSAQFEILKHKAQTSSELYDALQLRLEEAGITAGLNSNSLEVVD 420 Query: 326 SPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADHL 376 +LPV P K V+ L G + LL ++ + + + + Sbjct: 421 HANLPVIPVTPQKKRTVVFGFLGGLIAGIAISLLLESLDDTLRTSEEVESI 471 >UniRef50_C8X034 Lipopolysaccharide biosynthesis protein n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X034_DESRD Length = 296 Score = 91.6 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 41/353 (11%), Positives = 95/353 (26%), Gaps = 88/353 (24%) Query: 18 PLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLI-SFILPQKWTSAAVVTPPEP 76 ++ +++EIDL+ L +LWR K V V A I F + + + A + E Sbjct: 22 QVSPQADDEIDLVELWLILWRRKWLVAGVTILATLAATFITVFGIQPAYKATATIRAVET 81 Query: 77 VQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKI 136 ++ + + L S + + + + E Sbjct: 82 EEFSNKDFLESVL----------------------TSNIFKRKVIEQNSLLPHYFPEKWN 119 Query: 137 DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 196 + R+ V + + + K + S + +L++T A L +D Sbjct: 120 PQEGTWRSGVDIPTSTQVLASGRFPLKIQTSGH-EISLTWTDADPHFAANQLEKTLDVFR 178 Query: 197 TLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPV 256 + + + + + I T + + + + +L+ + Sbjct: 179 SHLSQATPAETKQIATIDTHIQSLQEIKGATEAPEELNIELA------------------ 220 Query: 257 YSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDV 316 + RK ++ D+ + + Sbjct: 221 --------------------SLIRKKAELESQRDLYQSFTLINE---------------- 244 Query: 317 NFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQD 369 P P P +I+ L+ L + + +Q Sbjct: 245 ----------PLPPSSPTKPRTQLILALTLATSLFAGVFLAFLLEFIKNARQR 287 >UniRef50_Q0YTR7 Lipopolysaccharide biosynthesis n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YTR7_9CHLB Length = 394 Score = 91.2 bits (224), Expect = 5e-17, Method: Composition-based stats. Identities = 51/363 (14%), Positives = 114/363 (31%), Gaps = 12/363 (3%) Query: 26 EIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKS 85 EI+LL++ VL + K ++A+ A +++ P +T+ PP+ S Sbjct: 18 EINLLDVAIVLAKYIKLIVALPLVCAIIASVVTIQSPNIYTADTTFMPPKQESSVSSMVS 77 Query: 86 FTKLRVLDLDIKIDRTEAF----NLFIKKFQSVSLLEEYLRSS---PYVMDQLKEAKIDE 138 + A ++++ +S + ++ +R E Sbjct: 78 SLSSLGSLSGMLGSGGGALAGTNDIYVAVLKSRKMQDDMIRRFRLFDIYKTNSAENARRA 137 Query: 139 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 198 L +++A + + + + K L + +E A T + Sbjct: 138 LAAQTSVMAGKDGLIHLYVTDTNPKRAALLANGYVDVMLQQNNEFALTEAARRRQDAEKE 197 Query: 199 VVKESLENVRNKLEIKTQFEKEKLAQ---DRIKTKNQLDANIQRLNYSLDIANAAGIKKP 255 + + +K EK L + + + ++L + Sbjct: 198 FLDAKNRLSDAESSVKELQEKTGLITVGPQIAALQTMIKSTERQLAEMSVYSTPNNPDYI 257 Query: 256 VYSNGQAVKDDPDFSISLGADGI-ERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVN 314 + G+ I + +I + +L Q ++QLT A ++ Sbjct: 258 KTRQKLNDLQNEIGKAQTGSGYISKAPEKILEFTRKTRDLKYAEALYQLALQQLTLARID 317 Query: 315 DVN-FTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMA 373 + + K +P +K GP ++ V++ A+ VA + A K + Sbjct: 318 ESKSASSIKIVDRAVVPEEKSGPFRSRSVMIVAIAALFVAVIVAFVLEAYQRAKGNTESV 377 Query: 374 DHL 376 L Sbjct: 378 AQL 380 >UniRef50_C7LVW8 Capsular exopolysaccharide family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LVW8_DESBD Length = 779 Score = 90.9 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 55/357 (15%), Positives = 120/357 (33%), Gaps = 50/357 (14%) Query: 7 KQGSDAHFPDYPLA-SPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKW 65 + H ++P + + +EIDL + + VL R K + V+FA +++ + + Sbjct: 23 PSQAVVHASEFPASFPQAEDEIDLRDCLEVLVRRKWLIGGVLFAVFVTTFIVTLAMTPIY 82 Query: 66 TSAAV----VTPPE----------PVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKF 111 + + PP+ Q +E + TKL D + +F Sbjct: 83 KATGKLEFNLQPPKVTTFEDMLVPQTQTREFMNTQTKLLTSDSLAWRVIETLDLVHNPRF 142 Query: 112 QSVSLLE-----EYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEP 166 + E L ++ + D R +K DN K + Sbjct: 143 NTEITAEGEDSGGILSDLRRMLTTMPGQGEDLDAQVREAEVQQRLLKVFLDNLEIKAERD 202 Query: 167 SLYTSWTLSFTAPTSEEAQTVLSGYI-DYISTLVVKESLENVRNKLEIKTQFEKEKLAQD 225 + + L+F++P A+ V++ +I +I+ + K+ E+L + Sbjct: 203 TTILN--LAFSSPDPALARDVVNTFIGSFIAWQLDKKI---------GAAGVANEQLRKQ 251 Query: 226 RIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSIS--------LGADG 277 + +L+ + +N A AGI K + + + LG + Sbjct: 252 VEVARIRLEKSEAEMNA---FAQKAGIVSLDSRMNLVYKQLEEINSALALAHAQRLGREA 308 Query: 278 IERK-LEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKK 333 ++ + E+ + + N ++ + QL + + + P P + Sbjct: 309 LDAQAREVGVSALPMVIDNPLIQELRQQYVQLESQYEDKL------VVFKPDYPEAR 359 Score = 53.9 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 95/294 (32%), Gaps = 20/294 (6%) Query: 93 DLDIKIDRTEAFNLFIKKFQSVSLLEEYLRS---SPYVMDQLKEAKIDELDLHRAIVALS 149 + N FI F + L ++ + + + Q++ A+I + A + Sbjct: 211 SSPDPALARDVVNTFIGSFIAWQLDKKIGAAGVANEQLRKQVEVARIRLEKSEAEMNAFA 270 Query: 150 EKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLEN-VR 208 +K V ++ L + A + L + + ++N + Sbjct: 271 QKAGIVSLDSRMNLVYKQLEEINSALALAHAQRLGREALDAQAREVGVSALPMVIDNPLI 330 Query: 209 NKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPD 268 +L + + + + K +RL LD A+ I+ +++D Sbjct: 331 QELRQQYVQLESQYEDKLVVFKPDY-PEARRLKARLDDV-ASKIRHEESRIQGGIRNDYL 388 Query: 269 FSISLGADGIERKLEIEKAVT---DVAELNGELRNRQYL------VEQLTKAHVNDV--- 316 ++ + + + ++ K + ++ R+ L + D Sbjct: 389 VALK-NEESLRTQADLAKTSALDLNDRATQYKILEREVETNKEIHQSLLQRGKEIDATVG 447 Query: 317 -NFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQD 369 + + + LPVK D P + ++LS IG ++ L + + + Sbjct: 448 TDISNIQVVDHALLPVKADKPRIQLNLMLSIGIGLLLGVAAAFLLEFLDNTIKS 501 >UniRef50_C4KCH6 Lipopolysaccharide biosynthesis protein n=1 Tax=Thauera sp. MZ1T RepID=C4KCH6_THASP Length = 408 Score = 90.9 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 61/426 (14%), Positives = 122/426 (28%), Gaps = 74/426 (17%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 M + + +++IDL ++ LW+ K + + A G+ S + Sbjct: 1 MQNTQRPSQA----------YKDDDKIDLSQMVGTLWQQKGLIAGIGVLGAVLGVGGSLL 50 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 + T ++TP + K L D + + S S LE++ Sbjct: 51 STKYITEGLLLTPSASAPASDPTKKLQLLSASD----------YKRYESALSSGSRLEDF 100 Query: 121 LRSSP--------YVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 172 LR + + K + + KA A + Sbjct: 101 LRITSQTETPDGQRLQAIAKLPSGLREVIKPEFAFTDKDQKAFGIKADGDAQNALVGLRI 160 Query: 173 TLSFTAPTSEEAQTVLSGYIDYISTLV--VKESLENVRNKLEIKTQFEKEKLAQDRIK-- 228 + P++ T+L+ Y+ V + +L N + ++L D + Sbjct: 161 RYAGKGPSNGTPLTLLAEYVRDSVIKVDLAESTLTNCNTHATRAQELRNQQLQSDFVIRQ 220 Query: 229 --------------------TKNQLDANIQR-LNYSLDIAN---AAGIKKPVYSNGQAVK 264 +++ ++++ L A AA I+ +A + Sbjct: 221 ETQRIADLREIIARHPDAGAAESRQIVSLEKGTERFLSPAAQLVAAEIQIADLKLAKAQR 280 Query: 265 DDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQ----------------- 307 + + L K +L EL+N Q Q Sbjct: 281 ERERVASELKRKYYCDAEAALKQAVSGRKLLAELQNLQSAAFQGRDRAADIVEQTWNELD 340 Query: 308 LTKAHVNDVNFTPFKYQLSPSLPVKKD-GPGKAIIVILSALIGGMVACGGVLLRYAMASR 366 L + + T ++ P ++ P A V L L+G + VL R + Sbjct: 341 LERERWKNTYITGMRFVTPPEGTEMRERKPEVAPGVALGGLLGVIAGMMFVLGRAPWSDG 400 Query: 367 KQDAMM 372 + Sbjct: 401 HRRQAG 406 >UniRef50_B8D183 Lipopolysaccharide biosynthesis protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D183_HALOH Length = 278 Score = 90.1 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 53/340 (15%), Positives = 96/340 (28%), Gaps = 77/340 (22%) Query: 27 IDLLNLISVLWRAKKTVM-AVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKS 85 IDL I VLW + V+ + A GL F++ + + AV+ Sbjct: 15 IDLREYIKVLWAGRWLVISLMGIAILLVGLASYFLINPVYETEAVIRLTSTDGI------ 68 Query: 86 FTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAI 145 S L SP ++ + E E + Sbjct: 69 --------------------------YSRPASMARLIKSPSLLKGVMEGVNREYTMSELH 102 Query: 146 VALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLE 205 S +K + + + A +L G I ++S + Sbjct: 103 TFASNNIKVNHV---------RETSMLEIKVSHTEPRLAFDILEGLI----VKAQEKSDK 149 Query: 206 NVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKD 265 R + K + + + + NQ +++ L+ + ++K V N Sbjct: 150 YYRKVVNHKETYLQGIITELDEI--NQRIGSVEEGIEKLNNRDLPAVEKYVLLNSLDNNL 207 Query: 266 DPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQL 325 D + G V D L EL + P + Sbjct: 208 DSLLTYKRGL------------VKDKNRLERELLTLR-----------------PLEVIS 238 Query: 326 SPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 SP +P P + V+++ ++G M+ V R M Sbjct: 239 SPYVPENPVSPNIKLNVVIAGILGLMMGVFIVFFREFMKE 278 >UniRef50_Q13NU9 Exopolysaccharide transport protein n=1 Tax=Burkholderia xenovorans LB400 RepID=Q13NU9_BURXL Length = 746 Score = 90.1 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 42/353 (11%), Positives = 95/353 (26%), Gaps = 27/353 (7%) Query: 26 EIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQW--QELE 83 ++D ++ W+ K T+ A S++L +S VV + + ++ Sbjct: 160 QVDQFDVPKTYWKKKFTL--------VATGRDSYVLK---SSGDVVLEGKLNRVARGRVD 208 Query: 84 KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY-LRSSPYVMDQLKEAKIDELDLH 142 L V L + + L E+ + L Sbjct: 209 DGEVTLLVSRLAARPGTEFILRRSSELQAVEDLQEDLKIEEKGKQSGILSVTLNGPNPKK 268 Query: 143 RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKE 202 + + + V N + K E + + Y + + Sbjct: 269 TKSILDAVANEYVTQNVALKSAEAQQTIEFLDRQLPQLKSQLDDAEVKYNRFRNEKGTVN 328 Query: 203 SLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQA 262 E + L+ L + + + + + + K S G Sbjct: 329 LSEEAKLILQQSVDSNTALLELQQRRLELRQRFTEEHPSVVALDKQIVAAKSQTESLGSR 388 Query: 263 VKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFK 322 + P+ + L + + V +L L N + L V +V + Sbjct: 389 ISGLPNLE--------QGALRLMRDVAVDTDLYTGLLNSAQQLRVLKAGKVGNV-----R 435 Query: 323 YQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADH 375 + P KA+++ + ++G + +R A + + Sbjct: 436 VVDFAQDSEEPIKPKKALVIAMGVVLGAIFGVTTAFVRKAFFGGVESGDAIER 488 Score = 60.0 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 34/307 (11%), Positives = 96/307 (31%), Gaps = 16/307 (5%) Query: 15 PDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPP 74 P P A+ +N+++ + +S+++ + + ++ ++ +F + + ++ Sbjct: 6 PASPDATRANDDVSFADYLSLIYEGRWLIAGIMAFVIALSVIYAFGARPIYDANILIQVE 65 Query: 75 EPVQWQELEKSFTKLRVLDLDIKIDRT-EAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKE 133 + E +LD E + +VS L+ ++ ++P + Sbjct: 66 D-SDLSEKNLLGDLAPLLDAKSATTAEIELLRSRLVVGSAVSSLKLFIEATPRHFPIIGG 124 Query: 134 ----------AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEE 183 + + + + LS + + D P Y + A + Sbjct: 125 WVTNRYESRMSAAEPAGIAPPFLGLSRFAWGGESIQVDQFDVPKTYWKKKFTLVATGRDS 184 Query: 184 AQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYS 243 SG + L ++ + + + I ++ ++ L Sbjct: 185 YVLKSSGDVVLEGKLNRVARGRVDDGEVTLLVSRLAARPGTEFILRRSSELQAVEDLQED 244 Query: 244 LDIA---NAAGIKKPVYSNGQAVKDDPDF-SISLGADGIERKLEIEKAVTDVAELNGELR 299 L I +GI + K +++ L+ +A + L+ +L Sbjct: 245 LKIEEKGKQSGILSVTLNGPNPKKTKSILDAVANEYVTQNVALKSAEAQQTIEFLDRQLP 304 Query: 300 NRQYLVE 306 + ++ Sbjct: 305 QLKSQLD 311 >UniRef50_A3K8W6 Chain length determinant protein, putative n=3 Tax=Rhodobacteraceae RepID=A3K8W6_9RHOB Length = 442 Score = 89.7 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 38/385 (9%), Positives = 105/385 (27%), Gaps = 52/385 (13%) Query: 31 NLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLR 90 + + L R ++ + + + + + + + AVV + T Sbjct: 9 EVFAALRRRAWVILGIFLVGCVISVDYALMQQKVYEATAVVQIED--------ARVTSTA 60 Query: 91 VLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSE 150 + + L ++ S L + E ++ + Sbjct: 61 TGTAADANEASRRLQLIEQRLMSRDNLVSLMDKYDLFA----EDPALNDGERIYMMRQAA 116 Query: 151 KMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNK 210 ++ + + +S P E+A V + + + S E + Sbjct: 117 RITPITRPGPTFSAAAQAPSGLMISVMLPDPEKAAVVANDLMTKVIAESRDRSAE--QAS 174 Query: 211 LEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFS 270 + +E I A+ ++ N + A A ++ + + + D Sbjct: 175 ETLAFYQTEEARVDAEIVALEDRIADYKKANSAQLPAGVAALRTELTTLRETELDLSQEI 234 Query: 271 ISLGADGIERK----------------------LEIEKAVTDVAELNGELRNRQYLVEQL 308 I++ D ++ EIE + E+ +L + +++L Sbjct: 235 ITIQGDTARKRPEDLARQVAQLEDQRALVAARATEIEGQIASAPEVERQLGQLEREMDRL 294 Query: 309 T----------------KAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMV 352 +A + ++ + +P + I + A+ + Sbjct: 295 KDQYSVITRGKAEAEMGQALQDRQAAGRYEVLETALVPDDPVTSSRKKIAGMGAVASLIA 354 Query: 353 ACGGVLLRYAMASRKQDAMMADHLV 377 L+ M + + ++ Sbjct: 355 GLIVALVFEIMNPAIRTQKQMERVL 379 >UniRef50_Q7NQT3 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NQT3_CHRVO Length = 351 Score = 89.7 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 54/345 (15%), Positives = 105/345 (30%), Gaps = 27/345 (7%) Query: 21 SPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQ 80 + +E++L ++I V + ++AV A IS +P ++T+ A+V P PV Sbjct: 23 QSAPDELNLFDIILVAKEQWRLLLAVPLLLAVLAAGISLAMPDQYTAKALVNIPAPVGAA 82 Query: 81 ELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELD 140 +L+ + + L Y + Sbjct: 83 GGVNIVQSTSLLE---------------QAVEKFQLQRYYAVEDNRSALLALSNVVKTTA 127 Query: 141 LHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVV 200 ++ +S + + A L L + VL +D S V Sbjct: 128 GKDGLLEISATDRNAEQAARLGNYLADLTRQHILDGNLTEQSKRYFVLQKRLDVESEQVS 187 Query: 201 KESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNG 260 + S + + + + E + + + AAG V + Sbjct: 188 QLSRKVAQLVPDQEAALGGEGMQLISGFATLE-------AQLAFQNVQAAGNSGAVSNLQ 240 Query: 261 QAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTP 320 +V + E + D+ Q V DV Sbjct: 241 SSVMQLRASLELANPKVRQMSNEQLAGLRDLYFHRALAAELQRQVSLAKSLADQDV---- 296 Query: 321 FKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 + L S P++K GP + +IV+L+ L+G M+A ++ + Sbjct: 297 -QIVLKASAPLEKSGPKRTLIVLLAGLVGLMLAIALIVCKRQWRE 340 >UniRef50_C1XU43 Chain length determinant protein n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XU43_9DEIN Length = 323 Score = 89.3 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 53/359 (14%), Positives = 114/359 (31%), Gaps = 57/359 (15%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQW 79 A+ +EI L +L VL R + ++AV A IS ILP+ + S A ++ Q Sbjct: 4 AAQPQDEISLRDLYLVLKRNARMILAVTLGAALVTFAISMILPKTYRSQANLSLSVTSQQ 63 Query: 80 QELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDEL 139 Q + L L + Sbjct: 64 QLSGQILANLPSLSGLAGSFQDRLETR--------------------------------- 90 Query: 140 DLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEA----QTVLSGYIDYI 195 L++ + + + + W LS + EEA + +L+ D++ Sbjct: 91 -------ELAQSLGVANPASRYQAKFDDKTGIWRLSAKGSSPEEARRATEKLLATARDFL 143 Query: 196 STLVVKESLENVRNKL-EIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKK 254 + + + N+ L + + E ++ IK + ++ A + Sbjct: 144 ESKLAQTVNSNLAALLAQARIDAESAQIGLQEIKKALANTPPTVGADAAVASALESQGVN 203 Query: 255 PVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVN 314 P+ + + KL+ + +A+ + L + Sbjct: 204 PLVARATSPA------------YASLKLQEANLRSQLAQAQARIETYSRLARNPQEIRTL 251 Query: 315 DVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMA 373 + ++PS P++ P + ++A++G +++ L A+A R+ + A Sbjct: 252 VGQALQIQPLVAPSEPLRPVSPRPLLYAAIAAVLGLILSVFWAFLAEALAPRRPEPEAA 310 >UniRef50_D1W2E8 Chain length determinant protein n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W2E8_9BACT Length = 347 Score = 88.9 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 42/345 (12%), Positives = 98/345 (28%), Gaps = 15/345 (4%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPP--EPV 77 +N +I++ +I + + K T ++ + + +P+ + S + P Sbjct: 5 MKETNEQINISEIIKRVIQKKWTYALILSSTFAVACALILPVPRYYKSGVSLAPELGNIN 64 Query: 78 QWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKID 137 + L + + + + L+ + +S + + + +D Sbjct: 65 EGGGLSDIAASMGFNLNNTMLSDAISPELYPELLKSNRFISQLIDIRVKSLDGTINTTYY 124 Query: 138 ELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 197 N KKK P+ F E + S + ++ Sbjct: 125 NYLDKHQKPNPLTIPLYFLKNLFKKKAAPTPQDHHINHFQLTMRE--YEIFSAIRNKVTC 182 Query: 198 LVVKE-----SLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGI 252 V K+ ++ L T + + T+ + +NY ++ A Sbjct: 183 RVDKKTSLISIEVEDQDPLISATMADSVRYKLQEFITEYRTSKARHDMNYYKELTAKAKH 242 Query: 253 KKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAH 312 D + I L + + K + + + N Q Sbjct: 243 TYEKARQAYGSYADANMDIMLES--FKSKKDDLENDMQLKFNAYSTLNTQLQAAIAKVQE 300 Query: 313 VNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGV 357 F + ++P+K GP + I V + ++ V Sbjct: 301 ----KTPVFTVVTNATVPLKPAGPKRMIFVAGMLFLAFIITTVYV 341 >UniRef50_A3V8G8 Protein-tyrosine kinase n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V8G8_9RHOB Length = 618 Score = 88.9 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 43/374 (11%), Positives = 103/374 (27%), Gaps = 28/374 (7%) Query: 27 IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI-LPQKWTSAAVVTPPEPVQWQELEKS 85 +D+ ++ VLW K V+ F F + + ++ + ++ Sbjct: 17 VDIRHIFRVLWAGKWVVVLTTFLAVLMAGYYGFTIARPQHAAVTIIEIRTTQAFAIPGQT 76 Query: 86 FTKLRVLDLDIKIDRTEAFNLFIKKFQSVS--LLEEYLRSSPYVMDQLKEAKIDELDLHR 143 T + + T I K YL P + + + L R Sbjct: 77 STDVPPGTQVQILLATPILEQVIAKLDLQDDPAFNRYLTPVPPLSPRGLRTTLRNLLQGR 136 Query: 144 AIVALSEKMKAVDDNASKKK----DEPSLYTSWTLSFTAPTSEEAQTVLS--GYIDYIST 197 + + A + + + P ++ T + A + + + Sbjct: 137 SEPVPDDAAIASKLVQNLRAAIRVETPRDSDLLRVTVTTGDPDRAMAIANTLAAVYLADQ 196 Query: 198 LVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVY 257 + K+ L + L A + + ++ Sbjct: 197 VARKQDATAASIALLGARSADLRSHQAAIEAAITDLVARAGLHDPTRPDRLGHDLQDTTT 256 Query: 258 SNGQAVKDDPDFSISLGADGIERKLEIEKAVTD-------------------VAELNGEL 298 A S + + ++ + +L+ + Sbjct: 257 RLASAQAALARASDTANTQRLTAQIAALQTNRADLAAALQALTAASHARDRMQRDLDMAI 316 Query: 299 RNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVL 358 + ++L + P L+ + + GP K ++V ++A++GG+ V Sbjct: 317 AQQAGYQQELRALTLGAAQIAPDSRVLNAATEARYIGPQKLLMVQIAAMVGGLGGLMLVA 376 Query: 359 LRYAMASRKQDAMM 372 LR+++ DA Sbjct: 377 LRHSLRRGFTDAAA 390 >UniRef50_A0LGD5 Lipopolysaccharide biosynthesis n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LGD5_SYNFM Length = 408 Score = 88.2 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 49/398 (12%), Positives = 114/398 (28%), Gaps = 42/398 (10%) Query: 16 DYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPE 75 + S I LL+L+ + + K+ ++ F+F + + F + +T A V P+ Sbjct: 2 ENTPRQSSEKVITLLDLLVITAKRKRLILVGTFSFFAFLMALCFYMDPIFTGTAKVVVPQ 61 Query: 76 PVQWQELEKSFTKLRVLDLDIKIDRTEA---FNLFIKKFQSVSLLEEYLRSSPYVMDQLK 132 S + ++++ +S ++++ ++ Sbjct: 62 NTSSSTAILSQIAGSTGAAGLISGALGLGSSADMYVGLLKSRTVIDAVIQKYGIYALYKD 121 Query: 133 E--------------------AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 172 + A ELD AI+ + + K Sbjct: 122 DRILGSVRPYDMDSCRESFMGALKPELDAESAIITIGIEDKDRQRARDMANSLVDELLKI 181 Query: 173 TLSFTAPTSE--------------EAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFE 218 + S +A +++ EA + ++ Sbjct: 182 SQSISAASAQQKRLYYDLQLKKAHEALVGAEESLKMFQESTGVIQIDEQARATLSGIATI 241 Query: 219 KEKLAQDRIKTKNQLDANIQ-RLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADG 277 + ++A I+ K + A G+K+ + + SI Sbjct: 242 QAQIAAKEIQLKVMRSYAASSNPDLIRATAELEGLKEQLKKLEEKESSPSGGSIIPTGSV 301 Query: 278 IERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDV-NFTPFKYQLSPSLPVKKDGP 336 + + V D + L++ A +++ + + + LP KK P Sbjct: 302 PSLGADYLRKVRD---FKYQETVYLLLLKMYESARLDEANDSSIVQVVDRAVLPEKKTRP 358 Query: 337 GKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMAD 374 II + LIG +++ L + + + Sbjct: 359 KPVIIGVAGILIGFILSVFAAFLLEYLDQKSVSPESKE 396 >UniRef50_A3SUA0 Putative uncharacterized protein n=3 Tax=Rhodobacteraceae RepID=A3SUA0_9RHOB Length = 712 Score = 88.2 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 60/460 (13%), Positives = 126/460 (27%), Gaps = 92/460 (20%) Query: 6 IKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISF-ILPQK 64 + S ++F ++ IDL LI LWR K + AV F ++ + Sbjct: 3 MMNQSQSNFSG--PRDEDDDTIDLGALIGTLWRGKLIIAAVTLIFMLLAGYYAYGVAVPT 60 Query: 65 WTSAAVVTPPEPVQ-WQELEKSFTKLRVLDLDIKIDRTEAFNL----------------- 106 + S AVV +L+ +I + + Sbjct: 61 YRSTAVVVLDTKEDSIVDLQAVVGGFSGDSTEINTEIEVLKSRGLAGKVVDRLNLIADPE 120 Query: 107 FIKKFQSVSLLEEYL------------------------RSSPYVMDQLKEAKIDELDLH 142 F + + S+ + + V+ L Sbjct: 121 FNGRLREPSMRSRVISGIRSLLTSSTPSPEVPETELHRAKVRDSVIQSLLNKVSVSNIRQ 180 Query: 143 RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS------ 196 + ++ + ++ +A LY + +E+A LS + + Sbjct: 181 SLVFNVTAETESPVKSAQIANTIVELYILNQIEVKFEATEKATEWLSNRVSELQIELENA 240 Query: 197 TLVVKESLENVRNKLEIKTQFEKEKLAQDRIK------TKNQLDANIQRLNYS------L 244 V E + Q + ++ + R + T+ L + L + L Sbjct: 241 EKKVSEFTARTQLVSIEGLQALERQIKELRDRIDGAALTREGLQTRLADLEAAQTPDEKL 300 Query: 245 DIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYL 304 D A A + + + + + F + + ++ ++ + L Sbjct: 301 DAAQDAALTRIFSNGLSSETNQTAFDLRFDTVMTRVRADLVRSTQQLEALRNSEEELAAQ 360 Query: 305 VEQ----LTKAHVNDVNFTPFKYQ----------LSPSLPVKKD---------------G 335 + L + + S ++K Sbjct: 361 LASQGQDLIELQQLTRESEATRLLYEYFLTRLKETSAQEGIQKADSRMLSSSVVPNSPSA 420 Query: 336 PGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADH 375 P K+ I+ L+ ++G MV G VLLR + A + Sbjct: 421 PKKSQIIALAMILGAMVGSGLVLLREFRTRTFRTANELEQ 460 >UniRef50_P58593 Putative tyrosine-protein kinase epsB n=7 Tax=Burkholderiaceae RepID=EPSB1_RALSO Length = 751 Score = 87.8 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 43/309 (13%), Positives = 96/309 (31%), Gaps = 11/309 (3%) Query: 11 DAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAV 70 + P + +E+DL+ + VL + + + G +F+ + + + Sbjct: 2 TQNLSQPPAVNAPESELDLVRYLDVLVANRWLIAGIAAVVMLLGATYAFLARPVYEADVL 61 Query: 71 VTPPE-PVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMD 129 V + P + L + L + D + + + ++V L Y+ + P+ Sbjct: 62 VQVEDNPNSAKSLLGDVSSLFDVKTDANAEIEILRSRMVVG-KAVDNLHLYITAKPHYFP 120 Query: 130 QL--KEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTV 187 + A + + L + D P TA + Sbjct: 121 LIGAWVASRAKQLSEPGLFGLGGYTWGTELIDVDGFDVPEALEGQPFKLTA-LGNGRYRL 179 Query: 188 LSGYIDYISTLVVKESLENVRN--KLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLD 245 + +D VV E LE ++ +++ K ++ ++ L L Sbjct: 180 ENKSLDTPIEGVVGEPLEAKQSVGTIQLLVNTLAAKAGAAFELQRDSRLKTLEMLQDKLK 239 Query: 246 IA---NAAGIKKPVYSNGQAVKDDPDFS-ISLGADGIERKLEIEKAVTDVAELNGELRNR 301 I+ +GI + I+ K + E+A + L+G L Sbjct: 240 ISEKGKQSGIIGASLEGKNPALTAAIMNQIATEYVAQNIKRKAEEAERSLVFLDGLLPQL 299 Query: 302 QYLVEQLTK 310 + +E+ Sbjct: 300 KLQLERAEM 308 Score = 44.6 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 36/275 (13%), Positives = 78/275 (28%), Gaps = 17/275 (6%) Query: 70 VVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMD 129 + P E ++ + + L + +A F + S E L+ Sbjct: 183 SLDTPIEGVVGEPLEAKQSVGTIQLLVNTLAAKAGAAFELQRDSRLKTLEMLQDK----- 237 Query: 130 QLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLS 189 KI E I+ S + K A+ + Y + + A +E + L Sbjct: 238 ----LKISEKGKQSGIIGASLEGKNPALTAAIMNQIATEYVAQNIKRKAEEAERSLVFLD 293 Query: 190 GYIDYISTLV-VKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDI-- 246 G + + + E N L +E A + + + + + Sbjct: 294 GLLPQLKLQLERAEMKYNEMRNLRGTFDLSEEGKAFLQESVTTETSLQELKQKRAELLTR 353 Query: 247 --ANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYL 304 A+ G++ + L + + + + + DV N + Sbjct: 354 FTASHPGVQAIDQQIAVMSGKVGAMTRRLKS-LPNIEQDTVRLMRDVQVDNDLYVSLLND 412 Query: 305 VEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKA 339 ++QL + ++P + P K Sbjct: 413 MQQLKLVKAG--KVGNVRLVDGAAVPEEPVKPKKL 445 >UniRef50_B5S582 Putative tyrosine-protein kinase epsb , polysaccharide export protein epsb (Partial sequence) (Fragment) n=1 Tax=Ralstonia solanacearum RepID=B5S582_RALSO Length = 727 Score = 87.8 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 44/309 (14%), Positives = 97/309 (31%), Gaps = 11/309 (3%) Query: 11 DAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAV 70 + P P + NE+DL+ + VL + + + A G +F+ + + + Sbjct: 2 TQNLPQPPAVNAPENELDLVRYLDVLVANRWLIAGIAAAVMLLGAAYAFLARPVYEADIM 61 Query: 71 VTPPE-PVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMD 129 V + P + L + L + D + + + ++V L Y+ + P+ Sbjct: 62 VQVEDNPNSAKSLLGDVSSLFDVKTDANAEIEILRSRMVVG-KAVDNLHLYITAKPHYFP 120 Query: 130 QL--KEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTV 187 + + + L + + D P + Sbjct: 121 LIGAWISSRATRLSEPGLFGLGGYVWGTETIDVDGFDVPEALEGQPFKL-IVLGNGRYRL 179 Query: 188 LSGYIDYISTLVVKESLENVRN--KLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLD 245 + +D VV E LE ++ ++++ K ++ ++ L L Sbjct: 180 ENKSLDAPIEGVVGEPLEAKQSIGTIQLQVNNLTAKAGATFELERDSRLKTMEMLQDKLK 239 Query: 246 IA---NAAGIKKPVYSNGQAVKDDPDFS-ISLGADGIERKLEIEKAVTDVAELNGELRNR 301 IA +GI + I+ K + E+A + L+G L Sbjct: 240 IAEKGKQSGIIGASLDGTNPALTAAIMNQIATEYVAQNIKRKAEEAERSLVFLDGLLPQL 299 Query: 302 QYLVEQLTK 310 + +E+ Sbjct: 300 KLELERAEM 308 Score = 70.1 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 37/306 (12%), Positives = 87/306 (28%), Gaps = 7/306 (2%) Query: 70 VVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMD 129 + P E ++ + + L + +A F + S E L+ + + Sbjct: 183 SLDAPIEGVVGEPLEAKQSIGTIQLQVNNLTAKAGATFELERDSRLKTMEMLQDKLKIAE 242 Query: 130 QLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLS 189 + K++ I L AL+ + ++ S Q L Sbjct: 243 KGKQSGIIGASLDGTNPALTAAIMNQIATEYVAQNIKRKAEEAERSLVFLDGLLPQLKLE 302 Query: 190 GYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANA 249 + ++ E K F +E + + + + ++ Sbjct: 303 LERAEMKYNEMRNLRGTFDLSEEGK-AFLQESVTVETSLQELKQKRAELLTRFTASHPGV 361 Query: 250 AGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLT 309 I + + V SL + + + + DV N + ++QL Sbjct: 362 QAIDQQISVMSGKVNSMTRRLKSL----PNIEQDTVRLMRDVQVDNDLYVSLLNDMQQLK 417 Query: 310 KAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQD 369 + ++P + P K + L+ ++G ++ +R A+ D Sbjct: 418 LVKAG--KVGNVRLVDGAAVPEEPVKPKKLTVTALAGVLGVVLGVMAAFVRNALFGGITD 475 Query: 370 AMMADH 375 + Sbjct: 476 PQDIEE 481 >UniRef50_D1QTS5 Chain length determinant protein n=1 Tax=Prevotella oris F0302 RepID=D1QTS5_9BACT Length = 356 Score = 87.4 bits (214), Expect = 7e-16, Method: Composition-based stats. Identities = 40/353 (11%), Positives = 98/353 (27%), Gaps = 7/353 (1%) Query: 9 GSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSA 68 + + P ID L L + K + + A G + + LP + Sbjct: 2 NEENRLQNNPQWEEEETSIDFKALFDALKKHWKNYVIFISASVILGAVYALSLPAYYECQ 61 Query: 69 AVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVM 128 + P + + + + ++ + + + S + + Sbjct: 62 VTLVPELSLNGGATSSFSSVASSFGVKLGSSGSKDVDAITPNLYPDLMNSVDFKGSLFDI 121 Query: 129 DQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVL 188 ++ ++ + ++ +K + + K + ++ L+ T+ Sbjct: 122 KVHRKDSHKMMNYYDYLLYYQQKPWWIKLFSGKDTIKNEKLNTFMLT-KQQTAIMKAIQK 180 Query: 189 SGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIAN 248 + D V ++ L T + + T+ + + L + + Sbjct: 181 NVLCDVDEKTGVITIHVTDQDPLIAATMADSVQSRLQEFITEYRTNKARNDLENIKKLCS 240 Query: 249 AAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQL 308 A + D + + L + + K E + + Sbjct: 241 EAKHRYEKARQLYGSFSDSNQDLILES--VRSKQEDLENDMQLQFNTYNSLAANLQASYA 298 Query: 309 TKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRY 361 V F S ++P++K GP IV+L A I L + Sbjct: 299 RVQEV----TPAFTTLQSATMPIEKAGPQGKKIVLLFAFIAFFGVTMYALWKE 347 >UniRef50_D1B3W3 Lipopolysaccharide biosynthesis protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B3W3_SULD5 Length = 297 Score = 87.0 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 47/357 (13%), Positives = 103/357 (28%), Gaps = 60/357 (16%) Query: 14 FPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTP 73 + P +EIDL L + R KK ++ + + S + + A++ Sbjct: 1 MSETIQQMPHEDEIDLRELFRTIIRYKKFIVVITVCVTLFAAVYSVLKTPIYEVKAILEI 60 Query: 74 PEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKE 133 + T +D K Sbjct: 61 GFFTNTNTNTNTNTNTNTNTNTFLESPANLIQRLELN----------------YIDNQKG 104 Query: 134 AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYID 193 +K ++ + + + A ++ + + Q V+ Y+ Sbjct: 105 SKETSFLSKALLIKGTNNLVELVIEAQSNEEGLKKLNAIVDEVKL----KHQKVIEAYLK 160 Query: 194 YISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIK 253 + + Q +KE+L+ ++ K N + ++ L Sbjct: 161 QMHIKISN-------------IQAQKEELSLEKEKLSNFISNKTLMVDQILK-------D 200 Query: 254 KPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHV 313 P + +SI L +E + EL ++ + L + + Sbjct: 201 NPAVA--------AIYSIELNNKSLE-----------LTELKNKIYTLNNQLSDL-ELLI 240 Query: 314 NDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDA 370 N + + + K P KA+IV++S++ G +++ V L S K + Sbjct: 241 APSNVKETSFLGNITKSDKPVKPKKALIVLVSSITGFILSIFMVFLFEMFRSPKNEK 297 >UniRef50_B2IJA7 Capsular exopolysaccharide family n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IJA7_BEII9 Length = 739 Score = 86.6 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 43/348 (12%), Positives = 107/348 (30%), Gaps = 25/348 (7%) Query: 52 CAGLLISFILPQKWTSAAVV----TPPEPVQWQELEKSFTKLRVLDLDI--KIDRTEAFN 105 C + SF + TS + T T + + + N Sbjct: 133 CIAYITSFFSKPRLTSETKIDYKITQALLRNLIVKRVGLTDVIEITYTSLDPDKSAQIAN 192 Query: 106 LFIKKFQSVSLLEEY---LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKK 162 + L ++ R+ ++ D++KE ++ A+ E+ VD + Sbjct: 193 AIADSYIISDLDAKFEATRRTGEWLQDRIKELRMQSAAADEAVRKFKEENNLVDTSRGLI 252 Query: 163 KDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKL 222 + + L + EA+ L D+ + + + +++ + + + + Sbjct: 253 SQQQLTDLNTQLIAARTLTAEAKAKLDALQDWNGNVTNSKISDALKSDVISRLRAQYLDF 312 Query: 223 AQDRIKTKNQ----------LDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSIS 272 + + N+ L + ++ S+ + + A + S Sbjct: 313 SAKESEWANRYGADHLAAVRLRDQMHEISKSISLELNRITETYKSDYKIASAREGAIEKS 372 Query: 273 LGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPF-----KYQLSP 327 L +E KA + L + + L + + + F + Sbjct: 373 LNQLALEAAGTTSKAQLQLRVLESTAQTYRTLHDNFLQRSMEATQQQTFPVSEARIITKA 432 Query: 328 SLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASR-KQDAMMAD 374 P +K P +I+ + IG + V +R + + + +A + + Sbjct: 433 DTPERKSSPKTLLILSGATFIGCFLGVFAVFVRERLDNVFRTEAQIEE 480 >UniRef50_C5S677 Putative uncharacterized protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S677_CHRVI Length = 378 Score = 86.2 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 52/334 (15%), Positives = 97/334 (29%), Gaps = 48/334 (14%) Query: 29 LLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTK 88 L + +++L R K + +L+S ++P ++S AV+ E+ Sbjct: 8 LGDSLAILERRKWQAIVPASILFTIAVLVSLLIPPSYSSTAVMLA---------ERLEIP 58 Query: 89 LRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVAL 148 + + L ++ + L + D + +D Sbjct: 59 PDPARTTVMRHAEQRLRLIGQQVMTAGHLRTLIERYDLYSDIRRRESLDMAVAEMRQHIT 118 Query: 149 SEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVR 208 + ++A + +WTLSF ++ + +V Sbjct: 119 IDTIRAEILDMRTGHTARQANVTWTLSFEDGSA--------------------KITRDVT 158 Query: 209 NKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPD 268 N L E + + L A +RL AA I + D Sbjct: 159 NALASLFLSENPEQRTTANPAADSLHAAAERL--------AAEIDALKTRLATVERQRVD 210 Query: 269 FSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPS 328 + + A Q L QL ++ D F P Sbjct: 211 QHT----------ISALRRDYVNAMTKYRELREQSLQTQLVQSLERDRQGERFSLLEPPG 260 Query: 329 LPVKKDGPGKAIIVILSALIGGMVACGGVLLRYA 362 P + P + +I++L ++ G G VLLR A Sbjct: 261 APETSNTPNRLLILVLGFVLAGAGGVG-VLLRLA 293 >UniRef50_B3C5B9 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3C5B9_9BACE Length = 370 Score = 85.9 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 39/363 (10%), Positives = 104/363 (28%), Gaps = 32/363 (8%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQEL 82 + D + L+ LW A+ ++ G+LI +P+++ ++ P + Sbjct: 7 DPTQTDYILLLFKLWDARMFLLKTSMVGLLIGILIFISIPKEYETSIYTVPESTSGKIDT 66 Query: 83 EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLR------SSPYVMDQLKEAKI 136 ++ F+ + D +L+ + S L ++ + + Sbjct: 67 DEGFSSEVSIGGKKIQDA-IIPSLYPEVVSSTPFLLSLFDIPITLSNNKELSTLTLSEYM 125 Query: 137 DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 196 + + + E + L T+ E + + Sbjct: 126 STHQRSPWWNTIRVGILQIISFPITIFSEKETNDTSNLQPTSHQHGETIDIFH--LSKRE 183 Query: 197 TLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQ-----------------R 239 + + ++ K + + + ++ Sbjct: 184 IAIAAAINSRINVDVDKKKRTVTLHIRMQDPLVSATVADSVMAKLQKFVSDYRTKKECIN 243 Query: 240 LNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELR 299 L ++ ++ A + A D + S+SL +++L + D+A Sbjct: 244 LEHAENLYQQARKRYYEAQETYAHFADANQSLSL--KLYQKELYNLQIAKDIAYKEYTET 301 Query: 300 NRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLL 359 +Q ++ F ++P+ P K I+ + L+ + CG + Sbjct: 302 LQQLQFAKIRVYK----KRPVFAIIEPATVPLSPVSPSKIKILSVIFLLSLAMGCGWIYF 357 Query: 360 RYA 362 + Sbjct: 358 KTM 360 >UniRef50_B6BQX7 Chain length determinant protein n=1 Tax=Candidatus Pelagibacter sp. HTCC7211 RepID=B6BQX7_9RICK Length = 352 Score = 85.9 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 42/316 (13%), Positives = 114/316 (36%), Gaps = 16/316 (5%) Query: 14 FPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTP 73 NN+I+ + ++ ++W K + + F G+ + +P + + + P Sbjct: 1 MKKKIPLYRYNNDIEFIEILQIIWNGKVKIFLITIIFTLIGVGYTSKIPNSFKLSITIQP 60 Query: 74 PEPVQWQEL----EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSS----P 125 + + + + + L + + +++++ +++ Sbjct: 61 SKNSNFVKFIPINQMLISSLLNNSTQKHFTNQQLEINQELQVNEITMIDRFVKEFLDFEE 120 Query: 126 YVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQ 185 ++ + IDE L I + +K + ++ DE + + + SEE Sbjct: 121 FINVLESNSYIDENTLQTEIERQRQMLKYSKLLSLQRLDETNKDLGYVIKLIWGDSEEGL 180 Query: 186 TVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLD 245 +LS ++ + K +++ L+IK + K + RI + A + LN + + Sbjct: 181 KILSETLNLTKINLHKSVFKDLDYFLKIK-KEIKISENESRILFLTEQSAIAKELNIAEN 239 Query: 246 IANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLV 305 + + P V + G I++++ + + +++ + + Sbjct: 240 QVDTVNL--PQDKIAVNVTTNNIGYYLQGYKAIDKEISLIENRE-----YKDIKKIKERI 292 Query: 306 EQLTKAHVNDVNFTPF 321 E L +N V++ F Sbjct: 293 EILKTEKINLVDYNLF 308 >UniRef50_C0VIY7 Protein tyrosine kinase n=4 Tax=Acinetobacter RepID=C0VIY7_9GAMM Length = 740 Score = 85.5 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 75/230 (32%), Gaps = 17/230 (7%) Query: 152 MKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLS----GYIDYISTLVVKESLENV 207 + +++ S T+ TL F E + L + + + + Sbjct: 269 NAILSAYSAQNVARKSAETAQTLKFLDEQLPELKQQLDKAEREFNKFRQQYNTVDVTKES 328 Query: 208 RNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDP 267 L E +K+ ++ + + A IKK + +K P Sbjct: 329 ELYLTQSITLETKKIELEQKQADIAAKYTAEHPAMREINAQITAIKKQIADLNSTLKQLP 388 Query: 268 DFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSP 327 D + L++ + V +L L N + + +V + + Sbjct: 389 DLQ--------RQYLQLYREVEVNTQLYTALLNSYQQLRIAKAGEIGNV-----RIVDTA 435 Query: 328 SLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADHLV 377 PV+ P K I+IL+ +GG + LLR + + +D+ + + Sbjct: 436 VEPVEPIKPKKLQILILAIFLGGFIGTLIALLRNMLRTGIKDSSQIEREL 485 Score = 51.6 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 34/300 (11%), Positives = 83/300 (27%), Gaps = 8/300 (2%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEP-VQ 78 + + + IDL L L K + V LL P ++ A+V Sbjct: 16 NTNTEDTIDLKELFFALLAQWKLIALCVMLSLVCALLYLRTTPNTYSVDALVQVESSKGA 75 Query: 79 WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 L +++ + + + + +L + S+P + Sbjct: 76 SAALLGDLSQVIDQKSPAQSEIEILKSRLVLGSVIQALNLDINISNPDDTFVQRLLGKQN 135 Query: 139 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 198 + ++ + K + E + + + + Sbjct: 136 YTTEYSPKGVTFQDGQKVFEIRKFEVPNEFLDKTLRLQFKGNQFELIDTKTDEVLLSAPM 195 Query: 199 VVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYS 258 + L N ++ F K++L D + +K L + ++ ++ +A + + Sbjct: 196 NQENQLSNRYGTWKLNV-FSKDQLNTDYLISKFSLPSAVKSISARYSVAEKGKLTGILGL 254 Query: 259 NGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNF 318 + Q + L A + + ++L EQL + Sbjct: 255 SYQGEDKQHI------TKVLNAILSAYSAQNVARKSAETAQTLKFLDEQLPELKQQLDKA 308 >UniRef50_C6JIE9 Predicted protein n=2 Tax=Fusobacterium RepID=C6JIE9_FUSVA Length = 318 Score = 85.1 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 53/356 (14%), Positives = 116/356 (32%), Gaps = 54/356 (15%) Query: 21 SPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQ 80 +EID+ L+ ++ + K V+A+ + GL ++F + + Sbjct: 9 YYEEDEIDIYELVDIIIKRKILVLAIFIICSLLGLGVAFFVRSLKQDTLALKFNINYAKL 68 Query: 81 ELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELD 140 E F K + I +D N ++ +F + L E ++++KE ++ Sbjct: 69 ENNYFFAKSGLNFTKINVDNILITNKYVDEFFKLEKLNE------LYLEKIKEGNRNDYS 122 Query: 141 LHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFT-APTSEEAQTVLSGYIDYISTLV 199 + + + K S+T+S T E + +L+ YI I +L+ Sbjct: 123 RSKFLNDIL------------KVSFNRDTNSYTVSVTMKKDQELQKDILNKYITIIESLI 170 Query: 200 VKESLENVRNK---LEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPV 256 + + + N+ +E + + +EKL + K L+ LN +I P+ Sbjct: 171 NIQVDDEIENRYTFVESENRISREKLNKIENHIKEILEKEKNNLNKDTNIKEFIEYTNPI 230 Query: 257 YSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDV 316 S K+ + ++ L +D Sbjct: 231 LS------------------VEREKVTSLYNQSS------------EMLIGLNGLKRDDE 260 Query: 317 NFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMM 372 S K +I+ + L+G ++ + + + K+ + Sbjct: 261 VKNIITLDSSIYEIETKSKAK--MILAVGILLGIVLGIMSAFIAEFIDNYKKRTIS 314 >UniRef50_C0QSZ0 Chain length determinant protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QSZ0_PERMH Length = 288 Score = 85.1 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 37/371 (9%), Positives = 102/371 (27%), Gaps = 86/371 (23%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 M Q ++ + +EIDL L L + K V++V F + F+ Sbjct: 1 MEKDKNIQKLESKDLSEKVVYYEEDEIDLYELWLTLKKRYKLVLSVTVFFILLSAVYLFL 60 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 + + +V P+ + + I +++ + Y Sbjct: 61 TKPVYRAEFIVKLPQ---------------------GLTSPQETKNIIDNLENLRKEKRY 99 Query: 121 LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT 180 + S + + K +D ++ + + Sbjct: 100 MELSNLL--------------------GISQEKIMDIDSFSASEIRKNKNLIKVILDVYD 139 Query: 181 SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 + +++++ + + K L +I+ Sbjct: 140 PNIISKLSVSILEHLNN---------------------NRFVKERIEIRKETLRFSIEET 178 Query: 241 NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN 300 N + + + +KD + + + L +++N Sbjct: 179 NEKIKEIESIKDRILNDLKNGRIKDLGFNPVDMDRTVL--------------SLKEKVKN 224 Query: 301 RQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLR 360 + ++ L ++ + P +P K P KA+I+ ++++ G + Sbjct: 225 LENQLKLLR----------GYEIAVDPVVPEKPSKPKKALILAVASVSGLFLGVFLAFFA 274 Query: 361 YAMASRKQDAM 371 + + ++ Sbjct: 275 EWIENARKRRE 285 >UniRef50_D0MHQ9 Capsular exopolysaccharide family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MHQ9_RHOM4 Length = 790 Score = 84.7 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 36/316 (11%), Positives = 104/316 (32%), Gaps = 20/316 (6%) Query: 17 YPLASPSNNE--IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPP 74 P + +E I+ + + R K ++ + A A ++ LP + S+A+V Sbjct: 21 PPASDEKRDEGRINFAEIWHTIRRGKWIILLTMLVVAGAIGAYTYTLPPVYESSAIVFVD 80 Query: 75 EPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRS--SPYVMDQLK 132 + ++ + E L + + E + + + D+ Sbjct: 81 TRGGG---NAPVSVAAFTPIERRALSNELGILRNSAELATRVAEAIVATAETAGAKDRFP 137 Query: 133 EAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYI 192 E +I ++ +++ + S ++ + T EEA + + Y Sbjct: 138 ILAPAEDGREPSIREIAFRLR-----ERVRFSPLSDQDMIVITAESTTPEEAAVIANRYA 192 Query: 193 DYISTLVVKESLENV-------RNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLD 245 + + S E++ ++E + Q +E Q +++ + L Sbjct: 193 EEYERFSRERSRESLAAAREFVEKQVEQRRQELEELERQWEAFARSRQVVRLGPQGERL- 251 Query: 246 IANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLV 305 +A A ++ + ++ + + + + + + + +++ L Sbjct: 252 VAEVAQLEAQRDAARFQLEQEKSALQFIEQELQKLEPGLVDELVKSRQVSTLEAQIDALS 311 Query: 306 EQLTKAHVNDVNFTPF 321 +++ + V + F Sbjct: 312 KKIAELKVQAEQYYVF 327 >UniRef50_C6ITG8 Lipopolysaccharide biosynthesis protein n=26 Tax=Bacteroides RepID=C6ITG8_9BACE Length = 367 Score = 84.3 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 50/377 (13%), Positives = 124/377 (32%), Gaps = 28/377 (7%) Query: 14 FPDYPLASPSNN-EIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVT 72 + + + +IDLL++ S + +K + +++ +P+K+T +++ Sbjct: 1 MSEQSVEKEPEDMKIDLLDIFSRIIAIRKKLYKATIIGLLIAIIVWASIPKKYTVTVMLS 60 Query: 73 PPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLK 132 P + L L + + S + + S+P++++ L Sbjct: 61 PEMSSDKGS--NGLSGLAASFLGGGSSFSSGTDALNASLSS-----DIVASTPFLLELLN 113 Query: 133 EAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYI 192 +D ++ R L + PS + S + + L I Sbjct: 114 IEVVDNGEVKRLSDYLDTESFPWWSYI---IGAPSRIIAGVQSLFINERKFSSEKLQDGI 170 Query: 193 DYISTLVVKES---LENVRNKLEIKTQFEKEKLAQDRIKTKNQLDAN-IQRLNYSLDIAN 248 ++ V + +N+ ++ KT + + + + I RL + Sbjct: 171 IILNKKVKGQIDVLKKNITATIDKKTAITNVSVTLQNPRITAVVADSVIHRLQEHIIDYR 230 Query: 249 AAGIKK---PVYSNGQAVKDDPDFSISLGADG--------IERKLEIEKAVTDVAELNGE 297 + K+ + + K + + A ++ ++ + + L + Sbjct: 231 TSKAKEDCVYLEKLFEERKQEYYAAQKKYAKYVDTHDNLVLQSIRVEQERLQNDMSLAYQ 290 Query: 298 LRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGG- 356 + ++ Q+ +A V + F P +P+K G G + V+L + G Sbjct: 291 VYSQVINQLQIARAKVQEEK-PVFAVVEPPVVPLKPSGIGVKLYVLLFVFFSLFITIGWE 349 Query: 357 VLLRYAMASRKQDAMMA 373 +L R + K+ Sbjct: 350 LLGRNILEWLKKQTRNE 366 >UniRef50_A5UI14 Putative uncharacterized protein n=2 Tax=Haemophilus influenzae RepID=A5UI14_HAEIG Length = 167 Score = 83.9 bits (205), Expect = 8e-15, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 75/203 (36%), Gaps = 39/203 (19%) Query: 169 YTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIK 228 + ++F+A T + AQ+VL+ Y+++++ + ++ + + ++ + Q Sbjct: 3 KIALKITFSAETPKYAQSVLTEYVNFVNQYSLNQTNQEFKQGFNLRLDELRFSKEQIEEN 62 Query: 229 TKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAV 288 ++ L +LDIA K Sbjct: 63 LTEAKKVQVENLTNALDIA--------------------------------------KNT 84 Query: 289 TDVAELNGELRNRQY-LVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSAL 347 V N + +RQ + +L + + Y SP P+ KD +A+I+ + + Sbjct: 85 PVVYPANYYITDRQLFKLNKLASQLELVEDVKTYYYLSSPDYPMVKDNSKRALILAIGFI 144 Query: 348 IGGMVACGGVLLRYAMASRKQDA 370 IG ++ +LL + + K+ + Sbjct: 145 IGILLPTFFILLGSVIQTNKKQS 167 >UniRef50_B8E0I3 Lipopolysaccharide biosynthesis protein n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E0I3_DICTD Length = 463 Score = 83.2 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 39/313 (12%), Positives = 90/313 (28%), Gaps = 23/313 (7%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQEL 82 +EI L L ++W+ K ++ + F L+ S + P+ + + V+ P+ Sbjct: 7 YEDEISLAELFYIIWKRKILIITLFIVFITVALIYSLLAPKIYEAKTVILLPQQSGSTSA 66 Query: 83 EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLH 142 + + + L I + T + N + +S S E + L L Sbjct: 67 LSALAQSLPISLGIPLSSTPSAN-MVAILKSRSAAEYVFKK---------------LKLE 110 Query: 143 RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKE 202 A + + S K + TL+ A + A + + Y++ +S + Sbjct: 111 GYFKAKNYEDALEQLMKSIKVTTNDKENTITLTAEAKDPKLAADIANTYVEALSNINASL 170 Query: 203 SLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL-----NYSLDIANAAGIKKPVY 257 + + E + + + + L + + + +A + Sbjct: 171 GVYTAKRTKEFLEKQIERVKKDLEQAENRLKEFQEKNLIFDVNDEAKAVVDALAKLESEK 230 Query: 258 SNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVN 317 + + + I D+ + L + K + Sbjct: 231 QMTSITLKVEKENFENLKRALINQQRI--QQKDLLAITSLTATSTVLSDLRNKLISQESE 288 Query: 318 FTPFKYQLSPSLP 330 P P Sbjct: 289 LALLSVDYGPEHP 301 Score = 55.4 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 28/275 (10%), Positives = 81/275 (29%), Gaps = 6/275 (2%) Query: 101 TEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKI-----DELDLHRAIVALSEKMKAV 155 + K + + + + D EAK +L+ + + +++ K++ Sbjct: 183 EKQIERVKKDLEQAENRLKEFQEKNLIFDVNDEAKAVVDALAKLESEKQMTSITLKVEKE 242 Query: 156 DDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKT 215 + K+ + TVLS + + + + +L +V E Sbjct: 243 NFENLKRALINQQRIQQKDLLAITSLTATSTVLSDLRNKLISQESELALLSVDYGPEHPK 302 Query: 216 QFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGA 275 + ++ + I + + + ++ ++ N +K D Sbjct: 303 VISMKYAIEETKRVIRDELDRIYKAINNSSLYELFSLQMDIFVNESKLKALSDVIDEYQK 362 Query: 276 DGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVN-FTPFKYQLSPSLPVKKD 334 + ++ + L+ Q +A +++ P KK Sbjct: 363 RLSNLPELGLTLSKLLRDVKVQETIYTMLLSQYEQAKIDETKETAVVSVLDPAVPPSKKS 422 Query: 335 GPGKAIIVILSALIGGMVACGGVLLRYAMASRKQD 369 P + V+++ + + + K++ Sbjct: 423 KPSTVLNVLIAGVSSIFLGIFLAFFLNFWENFKRE 457 >UniRef50_B5YEW0 Lipopolysaccharide biosynthesis n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YEW0_DICT6 Length = 462 Score = 82.8 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 39/313 (12%), Positives = 88/313 (28%), Gaps = 24/313 (7%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQEL 82 +EI L L ++W+ + V+ + L+ S + P+ + + V+ P+ Sbjct: 7 YEDEISLAELFYIIWKRRVLVIILFIISVLIALVYSLLAPKIYEAKTVILIPQQSGTSS- 65 Query: 83 EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLH 142 L+ L + I I + + +S S E + L L Sbjct: 66 -TLSALLQNLPIPIGITSSTPSANMVAILKSRSAAEYVFKK---------------LKLD 109 Query: 143 RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKE 202 A + + S K + T++ A + A + + Y++ +ST+ Sbjct: 110 DYFKAKTYEDALKQLMDSIKVTTNEKENTITITAEAKDPKLAADIANTYVEALSTINASL 169 Query: 203 SLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL-----NYSLDIANAAGIKKPVY 257 + + E + + + + L + + I +A + Sbjct: 170 GVYTAKRTKEFLEKQIERVKKDLDQAENKLKEFQEKNLIFSIDDEAKAIVDALAKLESEK 229 Query: 258 SNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVN 317 + + + I D+ + L + K + Sbjct: 230 QMTAITLKVSKDNFENLKKELVNQQRI--QQKDLLAITSLTATSTVLSDLRNKLISQESE 287 Query: 318 FTPFKYQLSPSLP 330 P P Sbjct: 288 LALLSIDYGPEHP 300 Score = 62.4 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 28/275 (10%), Positives = 83/275 (30%), Gaps = 6/275 (2%) Query: 101 TEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKI-----DELDLHRAIVALSEKMKAV 155 + K + + + EAK +L+ + + A++ K+ Sbjct: 182 EKQIERVKKDLDQAENKLKEFQEKNLIFSIDDEAKAIVDALAKLESEKQMTAITLKVSKD 241 Query: 156 DDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKT 215 + KK+ + TVLS + + + + +L ++ E Sbjct: 242 NFENLKKELVNQQRIQQKDLLAITSLTATSTVLSDLRNKLISQESELALLSIDYGPEHPK 301 Query: 216 QFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGA 275 + ++ K + + + + + + ++ + N +K D + Sbjct: 302 VVSMKYAIEETKKVIREELDRVYKAINNSSLYDLFNLQMSILVNESKLKALSDVIDQYQS 361 Query: 276 DGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVN-FTPFKYQLSPSLPVKKD 334 + + ++ + L+ Q +A +++ P+KK Sbjct: 362 KLSKLPELGLTLSKLLRDVKVQETIYTMLLSQYEQAKIDETKEVAVVSVLDPAVPPLKKS 421 Query: 335 GPGKAIIVILSALIGGMVACGGVLLRYAMASRKQD 369 P + V+++ + + + K++ Sbjct: 422 KPSTVLNVLIAGVSSVFLGVFLAFFLNFWENFKKE 456 >UniRef50_B1KCB3 Exopolysaccharide transport protein family n=2 Tax=Burkholderia RepID=B1KCB3_BURCC Length = 740 Score = 81.6 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 45/344 (13%), Positives = 109/344 (31%), Gaps = 35/344 (10%) Query: 43 VMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTE 102 + F A + + + P V + + L V + K T Sbjct: 160 LYGETFVMALQSGNTYHLSGPDVDAGGTIGVPLKVATPDGPLA---LLVSSVRGKPGATF 216 Query: 103 AFNLFIKKFQSVSLLEEY-LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASK 161 + L + + D + + A++ + + V N + Sbjct: 217 VLRRYSTLSTIEELRQSLNIAEKGKQSDVIGVTLDGSDPVKTAMILNTLGSEYVHQNERR 276 Query: 162 KKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL--------VVKESLENVRNKLEI 213 K +E ++SF + E + L + + + +E+ ++ ++ Sbjct: 277 KSEEAE----RSISFLSAQLPELRAQLELSENRFNAYRATHGTLNLDEEATALLQRSVDA 332 Query: 214 KTQFEKEKLAQDRIKTK-NQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSIS 272 +++ K +D + + I+ L+ LD A A ++ Sbjct: 333 QSRLTTLKQKRDELMARFTPEHPAIRALDAQLDTARA---------EIGGIEQRTRALPP 383 Query: 273 LGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVK 332 + D + + + V EL L N Q + + V +V + + ++P + Sbjct: 384 VEQDVLRLQ----RDVQVGTELYTNLLNTQEQLRLVKAGKVGNV-----RLVDTAAVPEE 434 Query: 333 KDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADHL 376 P + ++++ S + G ++ R M D + +H+ Sbjct: 435 PVRPKRLLVIVGSTVFGLLIGATVAFSRRRMFDSIDDPIEVEHV 478 Score = 58.9 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 36/315 (11%), Positives = 91/315 (28%), Gaps = 16/315 (5%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 M+ L+ P S + L+ ++ + V G +F+ Sbjct: 1 MNHLDAPVRYAEPDDGPPGNVAS--------YLDALYDNRRLIALVTGLMLLIGTTYAFL 52 Query: 61 LPQKWTSAAVVT-PPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEE 119 + + +V + + + + + + + + + V L Sbjct: 53 GVPVYRADILVQVEENTNSAKSMLGDISSMFDVKTQASAEIEVLKSRLVAS-KVVDTLSL 111 Query: 120 YLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAP 179 + + P + + + L + ++ LY A Sbjct: 112 AIDAHPRYLPLIGSWLSRHATRLSDPLPLGYVTGTERISVAQFDVPAKLYGETF--VMAL 169 Query: 180 TSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQR 239 S + +D T+ V + L + + K + + + I+ Sbjct: 170 QSGNTYHLSGPDVDAGGTIGVPLKVATPDGPLALLVSSVRGKPGATFVLRRYSTLSTIEE 229 Query: 240 LNYSLDIANAAGIKKPV--YSNGQAVKDDPDFSISLGADGI--ERKLEIEKAVTDVAELN 295 L SL+IA + +G +LG++ + + + E+A ++ L+ Sbjct: 230 LRQSLNIAEKGKQSDVIGVTLDGSDPVKTAMILNTLGSEYVHQNERRKSEEAERSISFLS 289 Query: 296 GELRNRQYLVEQLTK 310 +L + +E Sbjct: 290 AQLPELRAQLELSEN 304 >UniRef50_B1I5B3 Lipopolysaccharide biosynthesis n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I5B3_DESAP Length = 445 Score = 81.2 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 46/427 (10%), Positives = 118/427 (27%), Gaps = 65/427 (15%) Query: 11 DAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI-LPQKWTSAA 69 + + + + IDL VL + +K + F ++SF L + + Sbjct: 3 EQQKNGPQRPAFTEDVIDLRAYFKVLHKWRKVIALGTFLAVLTSGILSFFILQPVYEAKT 62 Query: 70 VVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMD 129 ++ + Q + + V+ +I N ++ + +S +L++ + Sbjct: 63 LLMVTQAADRQRVVEQDGLEGVVGTLSRIPV-MTMNTYLGQIKSEALMDRVIAKLGLDRA 121 Query: 130 QLKEAKIDELDLHRAIVALSEKMKAVDDNASK--KKDEPSLYTSWTLSFTAPTSE----- 182 + + E+ I + V + ++ T + L + E Sbjct: 122 LYEPRHLLEMVDASVIKDANLIEVRVRHTDPVLARDIANAINTEYLLMLSDKNEEQMARS 181 Query: 183 ----------------EAQTVLSGY------IDYISTLVVKESLENVRNKLEIKTQFEKE 220 EAQ L + + + ++S + R K + T + Sbjct: 182 VDFLERQRDEALARLDEAQGKLKEFEAQPRSVAVLEAEFTQKSEDLARYKSRLNTAVIEL 241 Query: 221 KL------AQDRIKTKNQLDANIQRL------------------------NYSLDIANAA 250 + +++R + A Sbjct: 242 QQISAGVARMQEELNATPQTISVERSTDEGVVTAREPNPVYATLSERLSERKAAQAEKEA 301 Query: 251 GIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTK 310 ++ + L L+ + + + L ++ Q+ Sbjct: 302 EVQALTQLIAGLEGETSVLLAELTTK--RAGLDRLRDEVNRLDATANLLAQKVTETQI-- 357 Query: 311 AHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDA 370 A D+ T + P P K + + ++ ++G MV G + + ++ Sbjct: 358 ARSIDLGQTSVVVVSPANTPTTPVKPNKKLNMAVALVLGLMVFVGLAFVLEHLDYTIKNP 417 Query: 371 MMADHLV 377 + + Sbjct: 418 EDVERHL 424 >UniRef50_C5BJM9 Putative OtnB protein n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BJM9_TERTT Length = 295 Score = 80.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 31/229 (13%), Positives = 73/229 (31%), Gaps = 9/229 (3%) Query: 7 KQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWT 66 S+ Y + L+++ LWRAK ++ V+ F A +++ I P K+T Sbjct: 1 MSNSENPNRYYLELGSVPESLHLVDIGGALWRAKWVLLVVIAVFVGAFAVLAMITPVKYT 60 Query: 67 SAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPY 126 E V + + T I N + S + ++ + Sbjct: 61 -------AEVVVAEANAVARTDPGSDSAVPDIGVDLPSNEALAMITSRDFINRFIEDNNL 113 Query: 127 VMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKD--EPSLYTSWTLSFTAPTSEEA 184 + + + + +A + + D + + +S + E A Sbjct: 114 LPVLYRGQWNAQTQNWKLPAEAPTLWQAYKRFSRRVLDVGKDAESGLIRISVSFSQPELA 173 Query: 185 QTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQL 233 + + ++ ++ ++ L Q + + D + N+L Sbjct: 174 AEWANKIVAEVNEVLRANAIREAEETLAYLNQELQRTASMDLKASLNEL 222 >UniRef50_C4FKG4 Lipopolysaccharide biosynthesis protein (Fragment) n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FKG4_9AQUI Length = 176 Score = 80.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 63/175 (36%), Gaps = 12/175 (6%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQEL 82 +EIDL L ++W + + +VF +ISFILP+ +TS +V+ P Sbjct: 14 QEDEIDLFELFHIIWNNRFFIAKIVFGITILTAIISFILPKTYTSESVIVPVTKSSSGSG 73 Query: 83 EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLH 142 + + L + + S +L E ++ + + LK+ K + + Sbjct: 74 LSAIAAMAGLPVGGDQATANV----VAVLNSNTLRERVVKDLNLLDEILKDKKNEFKRPY 129 Query: 143 RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 197 + + + K +E + + ++AQ + I + Sbjct: 130 QEA--------GIRLKNNIKINEDKKNGTIKIEVDWKDPDKAQKINESIIKNLRQ 176 >UniRef50_A9EXV4 Protein tyrosine kinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9EXV4_SORC5 Length = 770 Score = 80.5 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 42/331 (12%), Positives = 106/331 (32%), Gaps = 24/331 (7%) Query: 59 FILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKID-RTEAFNLFIKKFQSVSLL 117 ++ S V + ++ T L + ++ +D + N + ++ Sbjct: 156 LVVEPVKDSRLAVIRYNDADRERAQRILTTLMDIYIEQNLDDALASTNSAVDWLRAQLDK 215 Query: 118 EEYLRSSPY--VMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS 175 +Y + + + I ++D L E+MK ++D + + + + + + Sbjct: 216 LKYDLETSETSLHEYKLSKNILDVDFEDKTNLLREEMKQINDALTSVRTKREEFAARSHE 275 Query: 176 FTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDA 235 + + S L+ L+ +R + E + + + + + A Sbjct: 276 LSKLDPNNPLDL------PASELIQSPVLQMLRARQEECVRERDALIGSGKGENHPDVRA 329 Query: 236 NIQRL--NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADG---------IERKLEI 284 +R+ N S IA ++ V + VK + L D ++ + + Sbjct: 330 ATERVAANRSALIAEIKNVQGAVNRDLAIVKRQEGGLVGLLEDAKKQAFELNSLKIEYDR 389 Query: 285 EKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVIL 344 + D E +L + L + + P+ P+ P + + + Sbjct: 390 LRRTKDNTEKLYQLVLERTKESDLQRM----LRVNNIHVLDRPNFPLTALRPRVGVNIGI 445 Query: 345 SALIGGMVACGGVLLRYAMASRKQDAMMADH 375 L G ++ G L R + + + Sbjct: 446 GILAGLLLGIGAALARAMLDRTLRTPDEVER 476 Score = 43.5 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 32/284 (11%), Positives = 88/284 (30%), Gaps = 22/284 (7%) Query: 28 DLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFT 87 DL+ + + + + A + + + + SAA V +P + L + Sbjct: 24 DLVVTWRTVSKHWAIALTTLLLVALSVTFYTLGQKKIYQSAATVQF-DPNPPRPLGRGVD 82 Query: 88 KLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVA 147 + + + E + K +S+ + + D + + ++ Sbjct: 83 TVVDMGAGSYWNNREYYETQYKVIRSIRVALAVVAQLNLQNDAYFLKDLPKDAASPGPMS 142 Query: 148 LSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENV 207 ++ + A + + + E AQ +L+ +D + ++L + Sbjct: 143 VTPEEAAEILRERLVVEPVKDSRLAVIRYNDADRERAQRILTTLMDIYIEQNLDDALAST 202 Query: 208 RNKLEIKTQFE--------------------KEKLAQDRIKTKNQLDANIQRLNYSLDIA 247 + ++ K L D N L ++++N +L Sbjct: 203 NSAVDWLRAQLDKLKYDLETSETSLHEYKLSKNILDVDFEDKTNLLREEMKQINDALTSV 262 Query: 248 NAAGIKKPVYSNGQAVKDDPDFSISLGADGIER-KLEIEKAVTD 290 + S+ + D + ++ I+ L++ +A + Sbjct: 263 RTKREEFAARSHELSKLDPNNPLDLPASELIQSPVLQMLRARQE 306 >UniRef50_B8CL31 Chain length regulator (Capsular polysaccharide biosynthesis) n=53 Tax=Gammaproteobacteria RepID=B8CL31_SHEPW Length = 736 Score = 80.1 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 40/321 (12%), Positives = 104/321 (32%), Gaps = 32/321 (9%) Query: 2 SSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFIL 61 S+ + P S SN +IDL L +L A+ ++AV F G++ + + Sbjct: 9 SNTPFQANQSQPLPQ----SNSNGDIDLGKLFGILLDARWLIIAVTSLFTTIGVIYALLA 64 Query: 62 PQKWTSAAVVTPPE-PVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 + + A++ + L + + + + + Sbjct: 65 TPVYKADALIQVEQKSSGMSALVGDMGDMFSSESSATTEVEIIKSRMVLG---------- 114 Query: 121 LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT 180 ++ + + + + L+ + A+ S+ + + ++ LS + Sbjct: 115 -KTVDKLNLTTLAQPQYLAVIGKGLSRLTGESNAIK--ISRFQTPNNTVANFILSVD-DS 170 Query: 181 SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 ++ A T+ + + +V E + + Q + +K IQ L Sbjct: 171 AKGAYTLYNQEGRKVLAGLVGELAT--KGDYSLFVQQLVGSKGDEFAVSKRSKLDAIQWL 228 Query: 241 NYSLDIANA-----------AGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVT 289 +L ++ AG +K + + F ++ D E + + + Sbjct: 229 QKNLSVSERGKQTGILQLSFAGEEKQLIEEILNNVSENYFLQNVARDSAEAQKSLNFLQS 288 Query: 290 DVAELNGELRNRQYLVEQLTK 310 + + EL + + + + + Sbjct: 289 HLPSIKTELTDYEDTLNRYRQ 309 Score = 72.0 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 43/326 (13%), Positives = 113/326 (34%), Gaps = 10/326 (3%) Query: 59 FILPQKWTSAAVVTPPEPVQWQ-ELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLL 117 F P + +++ + + L + + L ++ ++LF+++ Sbjct: 153 FQTPNNTVANFILSVDDSAKGAYTLYNQEGRKVLAGLVGELATKGDYSLFVQQLVGSKGD 212 Query: 118 EEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFT 177 E + + K + + + A ++ ++ ++ ++ L Sbjct: 213 EFAVSKRSKLDAIQWLQKNLSVSERGKQTGILQLSFAGEEKQLIEEILNNVSENYFLQNV 272 Query: 178 APTSEEAQTVLSGYIDYISTLVVKES--LENVRNKLEIKTQFEKEKLAQDRIKTKNQLDA 235 A S EAQ L+ ++ ++ + + + + + + AQ +K +L+A Sbjct: 273 ARDSAEAQKSLNFLQSHLPSIKTELTDYEDTLNRYRQDNDSIDLGLEAQSTLKVMVELEA 332 Query: 236 NIQRLNYSLDIANAAGIK-----KPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTD 290 + L + + K K + Q + + + + + E+ + D Sbjct: 333 QLNELTFKESEISQRFTKDHPAYKSLLDKRQVLLAEKERLNRRVQQLPKTQREVLRMTRD 392 Query: 291 VAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGG 350 V V++L+ V + + P K +IV+L+ L+G Sbjct: 393 VEVNQQIYIQLLNKVQELSILKAGTV--GNVRILDKAQSYSQAIKPKKPLIVVLATLLGA 450 Query: 351 MVACGGVLLRYAMASRKQDAMMADHL 376 M+A VL++ A+ ++ + + Sbjct: 451 MLAIAVVLVKAALHKGIENPDEIEAI 476 >UniRef50_Q1J1I9 Protein-tyrosine kinase n=3 Tax=Deinococcus RepID=Q1J1I9_DEIGD Length = 554 Score = 79.7 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 33/250 (13%), Positives = 82/250 (32%), Gaps = 18/250 (7%) Query: 4 LNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQ 63 + + + SD P+ P + NEIDL+ L + R ++ V A L S + P Sbjct: 1 MTLSRQSDQFPPERPGQG-TENEIDLVTLWQGVRRRLPWIVLVAALLAGVVYLWSRVQPN 59 Query: 64 KWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRS 123 + +++ + L + + A ++ + + +R Sbjct: 60 VYEASSSLITTGNGNVGSLRDAL-------VTAPPLPEGALQEALQGPIVLGEVIRRVRQ 112 Query: 124 SPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEE 183 + +++ ++L + + V + + +P +T++ PT + Sbjct: 113 DDRLAPEMRAELANKLQQE-------LQTRRVKTLDLQARLDPGGNGIYTVTAQGPTPQA 165 Query: 184 AQTVLS---GYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 A + + + ++ N L + +L D + + R Sbjct: 166 AALLADITAQALLNWDRGRALQGVQRAENSLRAQLAEIDRQLQSDTLNALERQTLVAARA 225 Query: 241 NYSLDIANAA 250 ++A A+ Sbjct: 226 TAQRNLAQAS 235 >UniRef50_B9JK00 Capsule polysaccharide export transport system permease protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JK00_AGRRK Length = 401 Score = 79.7 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 41/372 (11%), Positives = 113/372 (30%), Gaps = 44/372 (11%) Query: 36 LWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLD 95 L + +V + +FI +++ S P + L Sbjct: 40 LRSHLLLLFMLVIPGMLGAIYYAFISAEQYVSETQFVVRSPN-----RNAAGLLSGFLQS 94 Query: 96 IKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAV 155 R + + + +F + L + + D + + D L+ + ++ + Sbjct: 95 TGFVRAQDDSYIVSEFMMSRAAVDELATKNGLKDIMSRPEADFLNRYPLPWTVANNEELF 154 Query: 156 DDNAS-KKKDEPSLYTSWTLSFTAPTSEEAQTVLS-------GYIDYISTLVVKESLENV 207 + K D S TL A +E++ ++ + I+ ++ +++ Sbjct: 155 QHYKNFVKVDTNSSSGVTTLEVYAFRAEDSFSLANALLQHAEELINQLNDRARGDAIRYA 214 Query: 208 RNKLEIKTQFEKE-KLAQDRIKTKNQLDANIQRLNYSLD-IANAAGIKKPVYSNGQAVKD 265 + +L + + + + L ++ +LD IA + S + Sbjct: 215 QVELTDSEGRLQSTQKNLTDFRNRETLIDPTKQSAAALDLIARLSD--DVADSKARLAAL 272 Query: 266 DPDFSISLGADGIERKLEIEKAV----------------TDVAELNGELRNRQYLVEQ-- 307 D S D + ++ + +A+ L R+ + Sbjct: 273 DDQAPQSPQGDALRARVTAMERQVSDERARVVGSDSSMAPRIAQYEQLLLEREMAAKMLA 332 Query: 308 -----LTKAHVNDVNFTPF-KYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRY 361 L A ++ + + +P+LP P + ++ + +++++ Sbjct: 333 SATTSLENAKIDAQRQQLYLERISNPNLPDHPLYPKRIKSFLMFL---AICGAFYMIVQF 389 Query: 362 AMASRKQDAMMA 373 ++ + A Sbjct: 390 FVSQVLEHAASE 401 >UniRef50_B2PVB4 Putative uncharacterized protein n=3 Tax=Providencia RepID=B2PVB4_PROST Length = 693 Score = 79.7 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 47/304 (15%), Positives = 106/304 (34%), Gaps = 11/304 (3%) Query: 75 EPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEA 134 + ++ K + L + E F + E LR++ + + K Sbjct: 159 DNQTFEGKVGELLKQDEISLLVSSINAEVGQEFTLSKNARYSTIENLRNTLTIAEVGKST 218 Query: 135 KIDELDLH--RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYI 192 I L + + + + + + T+ TL F + +T L Y Sbjct: 219 GIINLAIKGADKAENVQILNSIIQNYVDQNTERKKEVTNNTLLFLDEYLPKVKTKLDNYE 278 Query: 193 DYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGI 252 + ++ ++ E++ LE K+ + ++++ + IQ+L A + + Sbjct: 279 NQLN--AFRKKNESIDLSLEAKSALDSALQVEEKLNELTFKEVEIQQLYTRNHPAYQSLL 336 Query: 253 KKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAH 312 K K+ +I + ++ + + + V + +L +Q + L Sbjct: 337 DK--RQQLLREKEKISKNIQKLPNTQQQIVRLTRDVESEQAIYNQLVAKQQELSVLNSGI 394 Query: 313 VNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMM 372 DV + S P K +IV+L+ ++G +V C V+ R ++ + Sbjct: 395 TADV-----RIIDSAESQPNAIAPKKTLIVVLATILGFIVGCAYVIAREFFNNKIKGTED 449 Query: 373 ADHL 376 D L Sbjct: 450 IDAL 453 Score = 79.3 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 39/304 (12%), Positives = 95/304 (31%), Gaps = 30/304 (9%) Query: 14 FPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTP 73 +S +++EIDLL L VL + + F G SF+ + + A + Sbjct: 1 MNTTKTSSAASDEIDLLALFKVLKSSYLKIGFFTLFFIVIGAAYSFLATPIYQANATLQY 60 Query: 74 PEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKE 133 + Q L++ + + + +E E ++S + + + Sbjct: 61 DKMSQVSLLDQMSDVMPFANNNNSQADSEI---------------EVIKSRMVLGKTVAD 105 Query: 134 AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYID 193 +D KA + E + +++ + Y Sbjct: 106 LNLDIHTAPAGFFDRLWGDKASVAISLYSLPEHLIGEPAIVTYLGE---------NRYAL 156 Query: 194 YISTLVVKESLENV--RNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIA---N 248 +I + + + ++++ + ++ Q+ +KN + I+ L +L IA Sbjct: 157 HIDNQTFEGKVGELLKQDEISLLVSSINAEVGQEFTLSKNARYSTIENLRNTLTIAEVGK 216 Query: 249 AAGIKKPVYSNGQAVKDDPDFS-ISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQ 307 + GI ++ + I + + E + L+ L + ++ Sbjct: 217 STGIINLAIKGADKAENVQILNSIIQNYVDQNTERKKEVTNNTLLFLDEYLPKVKTKLDN 276 Query: 308 LTKA 311 Sbjct: 277 YENQ 280 >UniRef50_A9WAT9 Lipopolysaccharide biosynthesis protein n=2 Tax=Chloroflexus RepID=A9WAT9_CHLAA Length = 443 Score = 79.7 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 40/323 (12%), Positives = 100/323 (30%), Gaps = 30/323 (9%) Query: 24 NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE 83 N+EIDL +S L R ++ A ++++I T++ + L+ Sbjct: 2 NDEIDLRPYLSALLRRWWIILGTALGVALLVGVLAWIRTPPHTASTSLLIVPASAQVTLD 61 Query: 84 KSFTKLRVLDLDIKIDRTEAF--------------------NLFIKKFQSVSLLEEYLRS 123 FT L +++ EA +Q +L + Sbjct: 62 NRFTSRDSLLFTTTVNQREALLGLARDATLEERVAAILESEGRLPDGYQLGNLSQRITIE 121 Query: 124 SPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEE 183 + + ++ D R + ++ + + + L+ + Sbjct: 122 TDGDLVRITARADTADDARRLAILWGQEYTRLVNETYTRDTSSLELVEQQLTEARERYQM 181 Query: 184 AQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKT----KNQLDANIQR 239 AQ L +I ++ + + + + ++ A + + DA + R Sbjct: 182 AQAELEAFIAQGELAAAEQEVRRLSDLVNSARAAGTDRFADYLRRANDIEQILRDAQLLR 241 Query: 240 LNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTD------VAE 293 A+ + + + +++ D ++ L VT + Sbjct: 242 QRLGDQSADEVNVADALAALLLRIRNLSDQGSDRPILQLDSSLTDNAVVTVADLDRLITA 301 Query: 294 LNGELRNRQYLVEQLTKAHVNDV 316 L E ++ + E+L++ N++ Sbjct: 302 LRAEYQDVRSEAERLSELPPNEL 324 >UniRef50_B2I037 ATPase n=12 Tax=Acinetobacter RepID=B2I037_ACIBC Length = 728 Score = 79.3 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 45/300 (15%), Positives = 96/300 (32%), Gaps = 19/300 (6%) Query: 81 ELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELD 140 S T L + + + + K S+ L + + S V ++ K I L Sbjct: 185 NQANSVTGPYGLWKVAIFTKDQFDSTYNIKKLSLPLAIKSISSDYSVEEKGKLTGILGLS 244 Query: 141 LHRAIVALSEK--MKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLS----GYIDY 194 K + +++ + S ++ TL F + + L + + Sbjct: 245 YQGQDQEHITKVLNAILATYSAQNIERRSAESAQTLKFLDEQLPDLKKQLDDAERQFNKF 304 Query: 195 ISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKK 254 + + L E +K ++ + + + A I K Sbjct: 305 RQQYNTVDVTKESELYLTQSITLETKKAELEQKQAEMAAKYTAEHPAMREINGQLAAINK 364 Query: 255 PVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVN 314 + +K PD + L++ + V +L L N + + Sbjct: 365 QIGELNSTLKQLPDVQ--------RQYLQLYREVEVKTQLYTALLNSYQQLRIAKAGEIG 416 Query: 315 DVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMAD 374 +V + + PV+ P K +++ILS +GG + LLR + + +D+ + Sbjct: 417 NV-----RIVDTAVEPVEPIKPKKLLVLILSVFVGGFIGALIALLRNMLRTGIKDSGQIE 471 >UniRef50_P58764 Tyrosine-protein kinase etk n=184 Tax=Enterobacteriaceae RepID=ETK_ECO27 Length = 726 Score = 79.3 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 45/314 (14%), Positives = 101/314 (32%), Gaps = 18/314 (5%) Query: 65 WTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYL--- 121 +T + Q LEK L + D+ K + + +L + Sbjct: 163 YTLEGEGFTVNGMVGQRLEKDGVALTIADIKAKPGTQFVLSQRTELEAINALQGTFTVSE 222 Query: 122 RSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTS 181 RS M +L D + R + +++ + +D S L F Sbjct: 223 RSKESGMLELTMTGDDPQLITRILNSIANNYLQQNIARQAAQDSQS------LEFLQRQL 276 Query: 182 EEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLN 241 E ++ L + ++ V ++ ++V LE K E+ +++ +A I +L Sbjct: 277 PEVRSELDQAEEKLN--VYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLY 334 Query: 242 YSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNR 301 + + Q ++ + + + E+ + DV Sbjct: 335 K-----KDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQL 389 Query: 302 QYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRY 361 ++L+ + + + + P KA+ V+L ++G ++ G VL R Sbjct: 390 LNRQQELSISKSSA--IGNVRIIDPAVTQPQPVKPKKALNVVLGFILGLFISVGAVLARA 447 Query: 362 AMASRKQDAMMADH 375 + + + Sbjct: 448 MLRRGVEAPEQLEE 461 Score = 74.3 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 31/298 (10%), Positives = 83/298 (27%), Gaps = 8/298 (2%) Query: 16 DYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPE 75 + P S NEIDLL L+ LW +K +++V F + S + + + +V + Sbjct: 7 NTPPGSTQENEIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLLSTPIYQADTLVQVEQ 66 Query: 76 PVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAK 135 L + + + + I L + Y + Sbjct: 67 KQGNAILSGLSDMIPNSSPESAPEIQLLQSRMILGKTIAELNLRDIVEQKYFPIVGRGWA 126 Query: 136 IDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 195 + + + ++ + +TL T ++G + Sbjct: 127 RLTKEKPGELAISWMHIPQLNGQDQQLTLTVGENGHYTLEGEGFT-------VNGMVGQR 179 Query: 196 STL-VVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKK 254 V ++ +++ K + + + + + + + G Sbjct: 180 LEKDGVALTIADIKAKPGTQFVLSQRTELEAINALQGTFTVSERSKESGMLELTMTGDDP 239 Query: 255 PVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAH 312 + + + ++ + +E + E+ EL + + + Sbjct: 240 QLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 >UniRef50_Q489D4 Tyrosine-protein kinase n=7 Tax=Gammaproteobacteria RepID=Q489D4_COLP3 Length = 759 Score = 78.5 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 48/329 (14%), Positives = 111/329 (33%), Gaps = 10/329 (3%) Query: 56 LISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVS 115 + F +PQ + Q +L K+ + + + F++ +K + + Sbjct: 167 VFRFDVPQYGIDKEYIIQASDNQSFKLLSEDGKVILHGKVGEELSNDRFSITLKTLVARA 226 Query: 116 LLEEYLRSSPYVM---DQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSW 172 E + + D E IV LS + + + +Y Sbjct: 227 GTEFIVTRKDRLNTIVDLQTAIGASEKGKDSGIVNLSFQHETPEYAEGVLNKTAEIYVLR 286 Query: 173 TLSFTAPTSEEAQTVLSGYIDYISTL--VVKESLENVRNKLEIKTQFEKEK--LAQDRIK 228 + + ++++ L + I + + + + + + L Q Sbjct: 287 NVDRNSAEAKKSLDFLEVQLPEIKKQLESSEALFNDYQRDQQSVNITLETQGVLEQIVEL 346 Query: 229 TKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAV 288 + +++RL S + + +AV+ D ++ E + ++ + Sbjct: 347 DTKLQELDLKRLAMSRMFKRNHPNYQGIVEQIEAVQKQRDGLAGKISNLPEMQQKLLRLT 406 Query: 289 TDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLP-VKKDGPGKAIIVILSAL 347 DV N V++L V + + +K P KA+IV+++ L Sbjct: 407 RDVEVGNEIYMMLLGKVQELDIVRAGTV--GNVRIIDVAEVNTIKPVKPKKALIVVMATL 464 Query: 348 IGGMVACGGVLLRYAMASRKQDAMMADHL 376 +GGM+A VL++ A+ +D + + Sbjct: 465 VGGMLAIAIVLVQKALHKGVEDPSEIEAI 493 Score = 71.2 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 45/331 (13%), Positives = 91/331 (27%), Gaps = 20/331 (6%) Query: 2 SSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFIL 61 +K + + NEIDL+ L L K ++++ FA G+ I+ Sbjct: 4 DENIVKPTVRNQQGNNTSNNAPANEIDLMALFGALIDRKIFIVSITTLFAVIGIAIAIFS 63 Query: 62 PQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYL 121 + + A++ E + + + + +L + + Sbjct: 64 TPIYKATAMIQVEESGGSVPGLDDMAGMFESSSKSITEIELLKSRSVIGEAVDTLKLDIV 123 Query: 122 RSSPYVMDQLKEA-----KIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 176 + I E DL A + + + D P Sbjct: 124 AVPKLFPVIGGRSFRKFNPIKEGDLAAASFGATSYAWGGEQIEVFRFDVPQYGIDKEYII 183 Query: 177 TAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDAN 236 A ++ + +LS I V E L N R + +KT + + I T+ Sbjct: 184 QASDNQ-SFKLLSEDGKVILHGKVGEELSNDRFSITLKTLVARAG--TEFIVTRKDRLNT 240 Query: 237 IQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAV-------- 288 I L ++ A K + G ++ + + V Sbjct: 241 IVDLQTAI----GASEKGKDSGIVNLSFQHETPEYAEGVLNKTAEIYVLRNVDRNSAEAK 296 Query: 289 TDVAELNGELRNRQYLVEQLTKAHVNDVNFT 319 + L +L + +E + Sbjct: 297 KSLDFLEVQLPEIKKQLESSEALFNDYQRDQ 327 >UniRef50_B6C223 Chain length determinant protein n=1 Tax=Nitrosococcus oceani AFC27 RepID=B6C223_9GAMM Length = 285 Score = 78.2 bits (190), Expect = 4e-13, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 90/257 (35%), Gaps = 25/257 (9%) Query: 7 KQGSDAHFPDY--PLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQK 64 + S FP +EI+LL+L +L R K TV+ AG+ SF++ Sbjct: 23 RPSSSMAFPQSGEYRGHHDEDEINLLDLWQILVRRKWTVIVFFLIVTTAGITASFLMTPI 82 Query: 65 WTSAAVVT----PPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 + + + PP+ V +QE+ ++ R + + +S SL ++ Sbjct: 83 YRAGVTLLIDREPPKVVDYQEI---------APVESPASREDFYQTQYGLLKSRSLAKQV 133 Query: 121 LRS-----SPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWT-L 174 P + K + L EK K ++ + EP + + Sbjct: 134 FEELDLAHHPVFAVEQKPSFWSRLMSKEEETGGQEKEKLIERFQEEITVEPVRNSRLVKI 193 Query: 175 SFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLD 234 + +P E + ++ + + +LE + F K++L Q + + + Sbjct: 194 YYDSPDPELSA----QVVETLGQAFITANLERRYDATAYARDFLKDRLLQVKARLEETEQ 249 Query: 235 ANIQRLNYSLDIANAAG 251 ++ N I G Sbjct: 250 KLVEYANNHEIITFEEG 266 >UniRef50_O52788 Tyrosine-protein kinase ptk n=4 Tax=Acinetobacter RepID=PTK_ACIJO Length = 733 Score = 78.2 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 48/322 (14%), Positives = 100/322 (31%), Gaps = 24/322 (7%) Query: 59 FILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLE 118 F L T ++ + L + + ++++ + QS+ Sbjct: 170 FSLTNTQTEQVIL-----TGKTNQSNTLRTADGLWNISIYTQDQLNDVYLIQKQSLPAAV 224 Query: 119 EYLRSSPYVMDQLKEAKIDELDLH--RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 176 + ++ V ++ K I L+ + + + + S T+ TL F Sbjct: 225 NNILTNYSVAEKGKLTGILGLNYQGTDKTHITQVLNAILVSYSQQNIERRSAETAQTLKF 284 Query: 177 TAPTSEEAQTVLS----GYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQ 232 E + L + + + + L E +K ++ + Sbjct: 285 LDEQLPELKQQLDVAEREFNKFRQQYNTVDVTKESELFLTQSVTLETQKAQLEQQVAEAG 344 Query: 233 LDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVA 292 + A I K + +K+ PD R L++ + V Sbjct: 345 AKYTSEHPVMKQMNAQLGAINKKIGELNATLKELPDLQ--------RRYLQLYREVEVKQ 396 Query: 293 ELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMV 352 +L L N + + +V + + P++ P K I+ILS +GG + Sbjct: 397 QLYTALLNSYQQLRIAKAGEIGNV-----RIVDTAVEPIEPIAPKKLQILILSIFLGGFL 451 Query: 353 ACGGVLLRYAMASRKQDAMMAD 374 LLR M S +D+ + Sbjct: 452 GTLLALLRNMMRSGIKDSTQIE 473 Score = 50.0 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 31/295 (10%), Positives = 88/295 (29%), Gaps = 10/295 (3%) Query: 22 PSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEP-VQWQ 80 + + IDL L L K + + LL P ++ A+V E Sbjct: 9 NTEDTIDLKELFFSLIAQWKLIALCIILSLICALLYLRATPDTYSVNALVQVEENKGASA 68 Query: 81 ELEKSFTKLRVLDLDIKIDRTEAFNLFI--KKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 L + + + + + + Q ++L + + D+L + Sbjct: 69 ALLGDLSSMIEQKQPAQAEIEILKSRLVLGNVIQHLNLDLKISGTENSFTDRLLSPHHYQ 128 Query: 139 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 198 + V + K D ++ + P+ + + + + T ++ Sbjct: 129 TEYQPKSVLFKDDEKVFDI---RQFNIPASFRDKKIELRFKDGQFSLTNTQTEQVILTGK 185 Query: 199 VVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPV-- 256 + + + L + + +++L + K L A + + + +A + + Sbjct: 186 TNQSNTLRTADGLWNISIYTQDQLNDVYLIQKQSLPAAVNNILTNYSVAEKGKLTGILGL 245 Query: 257 --YSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLT 309 + +I + + + + L+ +L + ++ Sbjct: 246 NYQGTDKTHITQVLNAILVSYSQQNIERRSAETAQTLKFLDEQLPELKQQLDVAE 300 >UniRef50_C9RRK0 Capsular exopolysaccharide family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RRK0_FIBSS Length = 706 Score = 77.4 bits (188), Expect = 7e-13, Method: Composition-based stats. Identities = 53/462 (11%), Positives = 131/462 (28%), Gaps = 97/462 (20%) Query: 11 DAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAV 70 + + +++EID+L ++ L K + + G L + L + S + Sbjct: 2 NEKMTQNGSNASADDEIDILEILVYLKGKWKFLFIFLILGVVFGGLAAMWLRPSFRSDIL 61 Query: 71 VTPPEPVQWQELE-KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY----LRSSP 125 + Q L L + + + + Y L + Sbjct: 62 LQVNVKGNKQGLALGEMGALLDVSTPSAAEMELIKSRVVLDHVVKEERLCYSAIPLDKAD 121 Query: 126 YVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLS---------- 175 +M + ++ L++ RA K+ A S + L L+ Sbjct: 122 RLMHREGRMDLELLEIPRAFQEAKGKLIARVTADSSAYEVIGLEGEVVLAGAVGETYRKP 181 Query: 176 ----------------------FTAPTSEEAQTVL---------------------SGYI 192 +A + A L Y Sbjct: 182 FAGDTLVICVKSLTATVGQTFLLSAVHPQTAAAGLLKGLGISEEGKNSGIIRVSLEDRYA 241 Query: 193 DYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKT---KNQLDANIQRLNYSLDIANA 249 D ++ ++ + ++ +E+++ K+ L+ + K +LD+ Q+L + Sbjct: 242 DRVAAILNTIANTYLKQNIEMRSAEAKKTLSFLEEQLPGVKAKLDSAEQKLTSFRNSKGT 301 Query: 250 AGIKKPVYSNGQAVKDDPDFSISLGAD-----------------------GIERKL-EIE 285 + + + I L + R+L + + Sbjct: 302 IDLTGETRVHLEKDVSLQQRLIELEQKKQEALRLFRAEHPTVRTIEEQQSRLRRELAKQQ 361 Query: 286 KAVTDVAELNGELRNRQYLVEQLTKAH------------VNDVNFTPFKYQLSPSLPVKK 333 ++ ++ + E+ + Q VE K + V + +P+K Sbjct: 362 RSAANLPVVQQEVLSLQEEVEVNNKLYTNLLNNIQQLRVVQAGEVGNVRIVDQAYVPLKP 421 Query: 334 DGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADH 375 P + ++ + ++ C V +R +++ + + Sbjct: 422 SKPNRKLVFVGVVFAFLLLGCLIVYVRRMLSNGVCSSSEVEQ 463 >UniRef50_C7H2L1 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H2L1_9FIRM Length = 494 Score = 77.4 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 56/362 (15%), Positives = 123/362 (33%), Gaps = 32/362 (8%) Query: 11 DAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAV 70 + + YP + EIDL+ L+ L K ++ A ++ + + AV Sbjct: 2 NENQTTYPTGAQDEEEIDLVALMVTLLHKLKPILLTAVVCAVIAGGLAGV--KILRGGAV 59 Query: 71 VTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQ 130 E++ + + D + + + S ++E L+ + ++ Sbjct: 60 ----SAEDQVAYEEALAEYQQKKKDYEFAVQQYELTAKSNEDAQSSVQEALKQAQDYAEK 115 Query: 131 LKEAKIDEL----DLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQT 186 +D + K++ + L + + A Sbjct: 116 SLLKNLDVYNVWTAQADLYIDSGYKIQPGSAYQNVDPTGALLAAYQKQLVSGDSMNAAAD 175 Query: 187 VLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDI 246 + + Y+ +V E +N + + A D+ + L+ + RL+ D Sbjct: 176 AVGVDVRYLKGVVTVELSQNDSGEYNG--VMTLQAYAADQQTAEKILNVLLGRLDLIHDK 233 Query: 247 ANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVE 306 A AA V S+ V D G+ +L + +D +++N Q + Sbjct: 234 AAAA-----VCSHSVRVIDQSV------TQGVSTELRALQQTSD-----EDVQNLQSQLV 277 Query: 307 QLTKAH--VNDVNFTPFKYQLSPSLP--VKKDGPGKAIIVILSALIGGMVACGGVLLRYA 362 +L A ++D + S P A +++ L+GG++ACG V++++ Sbjct: 278 ELQSARQALDDNLASAKSTWESAEEPALGGGAASSVAKYLLIGFLLGGVLACGVVVVKFL 337 Query: 363 MA 364 + Sbjct: 338 LD 339 >UniRef50_Q1Q1R5 Similar to Succinoglycan biosynthesis transport protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1R5_9BACT Length = 850 Score = 77.0 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 49/432 (11%), Positives = 121/432 (28%), Gaps = 69/432 (15%) Query: 9 GSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSA 68 + F + P N E+ L + + ++ + ++ +SF + + + Sbjct: 2 NQNNEFNNTFGRKPLNREVHLTDYLKIIRKHIWILVIFFTVVVSVVTYLSFTVTPVYKAT 61 Query: 69 AVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNL--FIKKFQSVSLLEEYLRSSPY 126 + + E ++ D + + + K+ + L E Sbjct: 62 TQIIIDNKKSFMEEMADVMRIDATDKEYYQTQYKLLASRSLAKQVIQENELREVFYRDAL 121 Query: 127 VMDQLKEAKIDELDLHRAI--VALSEKMKAVDDNASKKKDEPSLYTSWT-LSFTAPTSEE 183 E DE D+ + + +D EP T +SF+ + E Sbjct: 122 EKIGSSETAPDENDMESYLPLSDAEVTSEMIDWYLRNLMIEPIRETHLVNISFSNKSPET 181 Query: 184 AQTVLS-------GYIDYISTLVVKESLENVRNKLEIKT----QFEKEKLAQDRIKTK-- 230 + V + I + +++L+ ++++++ + +K K + Sbjct: 182 SARVANAHAHAFIERSSQIQRMSSQQALDWLKSQIQGQKFKVGDSQKAAFQYKYEKLRSF 241 Query: 231 ---------------NQLDANIQRLNYSLDIANAAGIKKP------VYSNGQAVKDDPDF 269 N++ + + SL + A KK + ++K Sbjct: 242 SFDDESIFLFPEIKENKVIDELYKQLCSLKESVLANTKKYGPNHPRMIEANASIKGLEQE 301 Query: 270 SISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKA------------------ 311 I ++ N ++++ Q + + Sbjct: 302 IIEEVKKVCSSIKRELDSIIAFESTNPKMQDIQEQMSLVKAGGAINYDILHLEAMSDQAI 361 Query: 312 ------------HVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLL 359 ++ + P+ P K + V+LS ++G G V Sbjct: 362 YDILINQAKEINLTGNMKKDTIRVVDKAEAPLFPSKPRKKLNVLLSVVVGLTFGTGLVFF 421 Query: 360 RYAMASRKQDAM 371 R M + + Sbjct: 422 REYMDNTVKTQE 433 >UniRef50_A9W817 Lipopolysaccharide biosynthesis protein n=1 Tax=Methylobacterium extorquens PA1 RepID=A9W817_METEP Length = 755 Score = 77.0 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 62/396 (15%), Positives = 130/396 (32%), Gaps = 40/396 (10%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKW--TSAAVVTPPEP 76 A+ +++ + + +L+S L R + V AV A A +S +LP + T+ +V P Sbjct: 69 SAAYADSGLRMRDLLSTLRRRARLVGAVAVAGALLTGTLSALLPPSYVTTAHVMVEPAAS 128 Query: 77 VQWQELEKSFTKLRVLDLDIKIDRTEAFN------LFIKKFQSVSLLEEYLRSSPYVM-D 129 L ++ L + F+ +I+ +V + + +++ D Sbjct: 129 EVAAGLLAPVVDTHIILLTSEARLRRVFDDLAAEPRYIEASAAVGAHPSFAERAKFLLRD 188 Query: 130 QLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLS 189 +E + S + A+ + + ++SF +++ A V + Sbjct: 189 AARELGLASRPAEPESETPSTDLGPGQARAAMLVRQERQSSIISVSFQDRSAQRAALVAN 248 Query: 190 GYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL-----NYSL 244 + + + + + + + Q +E A+ + ++ Sbjct: 249 RMVTRHVQELSERRTQEAAGRKDFQEQRVEEARAEVEEAERLVRAFQVENGASVTDREGE 308 Query: 245 DIANAAG--------IKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVA---- 292 +A I G D I L AD +E +L KAV Sbjct: 309 SVAEMTQQLVLLRSEIASHERDAGAPAAADELRVIRLQADALEARLAELKAVQGATIDRR 368 Query: 293 ----ELNGEL-RNRQYLVEQLTKAHVNDVNFTPF----KYQLSPSLPVKKDG--PGKAII 341 L+ L R+ L EQL + + F + S +P + + P + Sbjct: 369 IERHALDLRLDTARKNLTEQLRQLEESGKPQPAFASSARVVASAGVPTRPNSLHPAVVAV 428 Query: 342 VILSALIGGMVACGGVLLRY-AMASRKQDAMMADHL 376 L A G++ LL + + + + L Sbjct: 429 PALGAF--GILGAMVALLVERLATGYRSEREVEEEL 462 >UniRef50_A0LKB3 Lipopolysaccharide biosynthesis n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LKB3_SYNFM Length = 745 Score = 76.6 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 43/472 (9%), Positives = 130/472 (27%), Gaps = 99/472 (20%) Query: 2 SSLNIKQGSDAHFPDYPLASPSNNE--IDLLNLISVLWRAKKTVMAVVFAFACAGLLISF 59 S+ S + E + L + +L + ++ + V + + LL+ Sbjct: 6 SNEIAVPASASVTAAAQTYYAMEEEQVVHLRDYWHILAKRRRWFIGVFWGVMLSTLLVIL 65 Query: 60 ILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLL-- 117 ++ + + + L S L + + QS ++ Sbjct: 66 LMDPVYKVTTTLQIIQDNPSAILGGSSADPLG-ALTGSSELDRFYETQYNILQSRAIAYG 124 Query: 118 ---EEYLRSSPYVMDQLKEAKIDE---------------LDLHRAIVALSEKMKAVDDNA 159 L+ P + + + D L + + + + Sbjct: 125 LIDSLNLKEHPSYKEMEADNRNDPPEVVRQKYAEFLLDNLKIEPVKNSYLVNVSFKSTDQ 184 Query: 160 SKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKES---------------- 203 + P L + T +++ T+L +++ T + K+ Sbjct: 185 KLAQKLPEAIQGEYLKLSMTTRQQSYTLLRQWLEDELTRLGKKLEISERSVYADGRNHDF 244 Query: 204 --------LENVRNKLEIKTQFEKEKLAQDRIKTKNQLDAN-------------IQRLNY 242 V+ +E+ + + + +++ + + +L Sbjct: 245 LSLEEGQFNVIVQKYVEVSKALTVAQSERAIKEAQSRQISEKGADAPLITNHPLVTQLRQ 304 Query: 243 SL-----------------------DIANAAGIKKPVYSNGQAVKDDPDFSIS---LGAD 276 L A + +++ + + ++ + Sbjct: 305 QLIDLQGQVTGSGQIFGSNYPEHKGQSARMSELRERLGQEVRRIEASVRADYEAALRAEN 364 Query: 277 GIERKLEIEKAVTDVAE--------LNGELRNRQYL----VEQLTKAHVNDVNFTP-FKY 323 ++++ +++K + L +L+ Q L + ++ +A + Sbjct: 365 LLQKEFDLQKEKVIDLQNGLVQHHILKRDLQTNQTLYEGLLARMKEASIASTMVASNVSV 424 Query: 324 QLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADH 375 + P K P + + L+A+IG ++ + S ++ + Sbjct: 425 VNTAETPYKPWVPKPLLFLGLAAVIGALLGTMTAFFVEYLDSSIKNTEELER 476 >UniRef50_C9PPK9 Lipopolysaccharide biosynthesis protein WzzE n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PPK9_9PAST Length = 282 Score = 76.2 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 30/220 (13%), Positives = 78/220 (35%), Gaps = 11/220 (5%) Query: 34 SVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLD 93 R ++ + A SF++ ++W + A V P + + + Sbjct: 13 RSFLRYFVLILILTGLSAAIAYAASFLIKKEWRAEAYVGAPTANSLGNYYSLSSMYQFVS 72 Query: 94 LDIKIDR--TEAFNLFIKKFQSVSLLEEYLRSSPYVMDQ-LKEAKIDELDLHRAIVALSE 150 + F K+ S ++ ++ R++ + + E D+ +L R +L Sbjct: 73 GKPTDTTPMDFVYREFKKQAGSYDIVVDFWRNTDFYKQKQTGENVFDQQELERLANSLGF 132 Query: 151 KMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNK 210 + + S+K + +S T + ++A +LS ++DY++ + + Sbjct: 133 TPQQAINGLSEKIGD-------RISLTLGSPKQATELLSDFVDYVNLKTRSVVYNELIYR 185 Query: 211 LEIKTQFEKEKLAQDR-IKTKNQLDANIQRLNYSLDIANA 249 ++ K+ + KN +++ L + + Sbjct: 186 WKVLFDEVKKAGELNVGNMQKNNTYVSVEDWQGKLKLMQS 225 >UniRef50_B2TEB6 Exopolysaccharide transport protein family n=5 Tax=Burkholderia RepID=B2TEB6_BURPP Length = 740 Score = 76.2 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 40/315 (12%), Positives = 85/315 (26%), Gaps = 20/315 (6%) Query: 21 SPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQW- 79 S +EID+ LI V+++ KK ++AV G++ +F+ + V + Sbjct: 6 SRDEDEIDIRALIDVIFKNKKLIIAVTIVCTLIGVMYAFLATPIYRGDITVQVEDNSDLA 65 Query: 80 ----QELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAK 135 L T L + + + + V L Y+ + P L Sbjct: 66 GAAAGNLMSGLTSLFDIKSTDDGEMQILDSRLVTA-NMVDELRLYIDARPKYFPLLGAFI 124 Query: 136 IDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGY---I 192 L A + F+ T + LSG Sbjct: 125 AKHRTSLSQPGILGVGGYAWGSESIVVDQFDVPGEFEEDKFSVTTLGNNRYRLSGSDLNA 184 Query: 193 DYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGI 252 D + + V +++ + + +++L L I Sbjct: 185 DVVGVVGVPLLANTSSGPIKLLVSRLSSRENAQFELRRFSRIQVLEQLRKDLVITEMGKD 244 Query: 253 KKPVYSNGQAVKDDPDFS-----ISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQ 307 + V +D + I+ + A + L +L + + Sbjct: 245 QSGVIGVTYDDQDPARAAAVLNKIAENYVAQNADRKAAAAEKSLVFLKSQLPDVE----- 299 Query: 308 LTKAHVNDVNFTPFK 322 + + ++ Sbjct: 300 -RSLRLAEDRLNAYQ 313 Score = 73.9 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 46/298 (15%), Positives = 99/298 (33%), Gaps = 13/298 (4%) Query: 79 WQELEKSFTKLRVLDLDIKIDRTEAFNLFIK-KFQSVSLLEEYLRSSPYVMDQLKEAKID 137 KL V L + + F + + + + + D Sbjct: 195 LANTSSGPIKLLVSRLSSRENAQFELRRFSRIQVLEQLRKDLVITEMGKDQSGVIGVTYD 254 Query: 138 ELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 197 + D RA L++ + + +K + + L P E + + ++ Sbjct: 255 DQDPARAAAVLNKIAENYVAQNADRKAAAAEKSLVFLKSQLPDVERSLRLAEDRLNAY-- 312 Query: 198 LVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVY 257 + ++ + Q + + + +++ K + A I Y +A I Sbjct: 313 QNRHKVVDLSEQAKAVLGQAVEAQSSLFQLEQKRKELATIYSAQYPAVLALDQQI----- 367 Query: 258 SNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVN 317 + +A D+ + SI D + + + + VT L L N ++ T + + +V Sbjct: 368 AAARAHIDNFNESIQRLPDDQQNIVRLNRDVTVQTSLYVGLLNSVQQLQLATASKIGNV- 426 Query: 318 FTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADH 375 + + K P KA+++ L+A+IG G L R + D M + Sbjct: 427 ----RVIDHALVADKPTKPKKALVIALAAVIGLFGGIGFALARSTLFGGLTDPMDIER 480 >UniRef50_Q1YH82 Possible exopolysaccharide biosynthesis/transport protein n=1 Tax=Aurantimonas manganoxydans SI85-9A1 RepID=Q1YH82_MOBAS Length = 687 Score = 76.2 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 42/312 (13%), Positives = 114/312 (36%), Gaps = 33/312 (10%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNE----IDLLNLISVLWRAKKTVMAVVFAFACAGLL 56 M+ + + +A + P + ID +++ +W A++ ++ G+ Sbjct: 18 MAMFSSETNPNAPYAARPSGPQMQDSNGSLIDPVHVFQSVWSARRLIILTTIFGLLLGVA 77 Query: 57 ISFILPQKWTSAAV-------VTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIK 109 + +P+K+T+ + + + + L +++ I + + I Sbjct: 78 FALSMPKKYTAYSQIFADPRDIKVVQNEVTPNGLPTEATLALIESQIAVINSNDLMAKIV 137 Query: 110 KFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLY 169 + ++ E+ ++ L+ + + + M+ + + +D S Sbjct: 138 EAADLTSDPEFNGQGESLLPSLESLGLTSPTIASTNERFLQTMENLREATGVSRDAKSFI 197 Query: 170 TSWTLSFTAP--TSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRI 227 + +++ +P ++E ++ V + +ID+++ V ++ N L + +EK++ Sbjct: 198 LNISVTTESPEKSAELSRLVANTFIDHLAE-VQSDTAGRATNALSSRLTELREKVSAAEQ 256 Query: 228 KTKNQLDAN--------------IQRLNYSLD--IANAAGIKKPVYSNGQAVKDD---PD 268 ++ N I R+N L AN ++ +A DD Sbjct: 257 AVEDYKSENELVGVGGQLVDDSYILRINDELSRGRANVTALRVKAEQMSKASVDDVVEGA 316 Query: 269 FSISLGADGIER 280 F L ++ + R Sbjct: 317 FPEELTSEALTR 328 Score = 47.7 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 32/294 (10%), Positives = 85/294 (28%), Gaps = 20/294 (6%) Query: 85 SFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRA 144 + + + L K + +E+Y + V + + Sbjct: 226 AEVQSDTAGRATNALSSRLTELREKVSAAEQAVEDYKSENELVGVGGQLVDDSYILRIND 285 Query: 145 IVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESL 204 ++ +++ + S+ +F + EA T L G ++ + Sbjct: 286 ELSRGRANVTALRVKAEQMSKASVDDVVEGAFPEELTSEALTRLRGTYSDLAQKTASLAA 345 Query: 205 ENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVK 264 ++ + A+D I+++ + + + + K + Sbjct: 346 TLGPRHPQLIASRQSLASARDAIRSELARIVAGAQTDLARAERTNRDLTKQLDELKSDQV 405 Query: 265 DDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQ 324 + L ++R++E +AV + L Q +N + Sbjct: 406 ATSGSFVRL--RELQREVEASRAVYESYLLRARETGEQ-----------QGINTANVRVI 452 Query: 325 LSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLL-------RYAMASRKQDAM 371 + P++ + ++V ++G + + R AM R + A Sbjct: 453 SEATPPLRPSSMSRRLVVGAGGMLGFLAGVFLAGVGAISEQYRNAMRMRAEMAA 506 >UniRef50_A3WQF3 Putative tyrosine-protein kinase Wzc (Fragment) n=1 Tax=Idiomarina baltica OS145 RepID=A3WQF3_9GAMM Length = 290 Score = 76.2 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 36/295 (12%), Positives = 86/295 (29%), Gaps = 6/295 (2%) Query: 10 SDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAA 69 S+ + P + + +EIDL L+ VL AK ++ + F F G+ + + + + A Sbjct: 2 SERNPPSNTSHNNNEDEIDLRRLVGVLLDAKWLIIGITFLFMLGGVAYALLATPIYKADA 61 Query: 70 VVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMD 129 ++ + + + V L+ S P M Sbjct: 62 LLQVEKKSSGMPALSENMADMFSQESEADTEIQIMTSRMVIGAVVDQLDLTTVSQPDYMP 121 Query: 130 QLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLS 189 + E + + + + K V A K + +L + T + + Sbjct: 122 IVGEFLARRSEGNDELTINTFK---VPQYAVGKGTQLTLLDANRYELTFEDEVVLKGKIG 178 Query: 190 GYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANA 249 ++ + + + + Q K +L + + A+ Sbjct: 179 ELAEHGDWQLE---VARAEANNTKTFKLIELSRLQAINSWKPRLAVKERGKKTGILSASM 235 Query: 250 AGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYL 304 + + ++ + E + ++ + EL EL + Sbjct: 236 TYKDGEKAARILDAITNEYMLQNIRRNAAEAQKSLDFVQEQLPELKAELTAAEEK 290 >UniRef50_B5ZNF2 Lipopolysaccharide biosynthesis protein n=8 Tax=Rhizobium RepID=B5ZNF2_RHILW Length = 588 Score = 76.2 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 46/376 (12%), Positives = 113/376 (30%), Gaps = 25/376 (6%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 M+S I G A+ N+ + L +++ L ++A FAF Sbjct: 1 MTSSTIFSGVSPISLPAAAAAGGNSPLTLRDMLFFLKMRWLWILATTFAFLVIAGSYLLT 60 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 + ++ + V E +++F + ++ ++I R+ + + ++ Sbjct: 61 AAPTYVASTQLVIFPQVNSSEAQRAFAEDAFIEGQLEIARSSDVVDGTVRALDLDSDPDF 120 Query: 121 LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT 180 + P + + + + V ++ + S T S Sbjct: 121 VDWKPSL-----------------LDKSKDWLLGVSAQVDTGQEAAGMRASDTPSRPRTE 163 Query: 181 SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 E+ + + + + ++ + ++ ++ +A + + NI Sbjct: 164 QEQLHDLAIATLQ--NMMALRRIGNSTIIEISAAASTPQKAVAIADTLARQYIQKNIAMK 221 Query: 241 NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN 300 S + K + + KL ++ TD Sbjct: 222 ADSSRQYSDWLEKFVREQQRGLADASSALNTFNSNPRDQFKLAELQSATDARRTLY---- 277 Query: 301 RQYLVEQLTKAHVN-DVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLL 359 + + QLT+A + +LP+ K P +I+ + +G V ++ Sbjct: 278 -ESTLTQLTEAKQRITYPVSDATIISRATLPLSKARPRSTLILAFAGAVGLGVGLALAMV 336 Query: 360 RYAMASRKQDAMMADH 375 R+A R Sbjct: 337 RHAGDRRIVRPQQIAD 352 >UniRef50_A9EY54 Succinoglycan biosynthesis transport protein exoP n=3 Tax=Rhodobacteraceae RepID=A9EY54_9RHOB Length = 697 Score = 75.8 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 50/451 (11%), Positives = 124/451 (27%), Gaps = 83/451 (18%) Query: 9 GSDAHFPDYPLASPSNNEI-DLLNLISVLWRAKKTVMAVVFAFACAGLLISF-ILPQKWT 66 ++ P A+ E+ DL + +++WR + + A V G+ ++ + + Sbjct: 3 STNVSTPKTSFAADDGQEVLDLGAIFAIIWRGRWVIAACVLIGLIVGIWRAYIVATPLYG 62 Query: 67 SAAVVTP-PEPVQWQELEKSFTKLRVLD----------------------LDIKIDRTEA 103 + + P + ++E + L D L++ D Sbjct: 63 AEVQLVLDPRDEKVVDIESVVSSLSATDEVIRTEVHILGGRELAGQVVDRLNLISDPEFN 122 Query: 104 FNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE-LDLHRAIVALSEKMKAVDDNAS-- 160 L F V +L++ ++ + D + I L + V+ + Sbjct: 123 MMLRDPGFNPVQVLKDMIKGILGMQVYDTSLTPDPAFVREKVIQTLLANTRVVNIPDTYI 182 Query: 161 ---------------KKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVV----- 200 Y ++ +E+A L+ + + + + Sbjct: 183 FSIWVLSENPFKAADIANAFADTYVENQVAVKLNVTEQATGWLAERVTELRSQLEVNERR 242 Query: 201 -------------KESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIA 247 + + + +++ + + ++Q + A Sbjct: 243 VADIRAQADVTSPAQLIGLENRLISLRSALAERAAEVAEQQALQTELTSLQTVEEQRVAA 302 Query: 248 NAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQ 307 G + L D E + + + +A+L + + + + Sbjct: 303 RRNGYGAILARTDNPQDGWRSVLAQLARDLREAEAKEQAIRRSMADLEITIATQSDALTE 362 Query: 308 LTKAHVNDVNFTPF----------------------KYQLSPSLPVKKDGPGKAIIVILS 345 + +A + + P + P K I+ILS Sbjct: 363 VVQAERDAEASRLLFENFQNRLRETSMQIGLQRADSRVISRAFPPDRPALPNKGQILILS 422 Query: 346 ALIGGMVACGGVLLRYAMASRKQDAMMADHL 376 +GG + V++ +R A L Sbjct: 423 VFLGGFLGTVLVVVLQLSRARLHSAAQIAGL 453 >UniRef50_A4AB87 Chain length determinant protein n=2 Tax=unclassified Gammaproteobacteria RepID=A4AB87_9GAMM Length = 316 Score = 75.5 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 30/249 (12%), Positives = 68/249 (27%), Gaps = 8/249 (3%) Query: 27 IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELE--- 83 +DL+ ++ L RAK ++ A A +SF P + + A V+ + + Sbjct: 18 LDLMPFVNALLRAKWLLLIAFIAGASLAAWLSFTTPYTYVAGAKVSIVDIEDPGGVSPDD 77 Query: 84 ---KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELD 140 L + R + + + +S S +L + +E Sbjct: 78 RRASEVLTLVEHGFVMGTTRDNYSEVMMARLRSRSFTLHFLETHNIYRHFYPAKWSEETQ 137 Query: 141 LHRA-IVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLV 199 + + + T+S P + + Y+ + + Sbjct: 138 SWEEGFTPDVGESFTRFRDEIRMITVDEETDIVTVSMRWPEPTVPRDWANLYVQTFNEYM 197 Query: 200 VKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSN 259 + E V K ++ I+ Q L A + + + Sbjct: 198 RNRTQEEVLRKQAFLEDTLRKS-DVVEIQKSIYRLIEAQTAIMMLANAREEYVLEIIDPA 256 Query: 260 GQAVKDDPD 268 + + Sbjct: 257 ARPYRSVNM 265 >UniRef50_Q0AE90 Lipopolysaccharide biosynthesis n=2 Tax=Nitrosomonas RepID=Q0AE90_NITEC Length = 747 Score = 75.5 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 40/426 (9%), Positives = 105/426 (24%), Gaps = 52/426 (12%) Query: 2 SSLNIKQGSDAHFPDYPLASPSNNEIDLLN----LISVLWRAKKTVMAVVFAFACAGLLI 57 ++ ++ + D+ + +P EI+L+ L + ++A F G Sbjct: 66 NTQSMVEQLDSLSTFFETKTPVQAEIELIKSRMILGKTIRNLSLDIIATPRFFPFIGAAA 125 Query: 58 SFILPQKWTSAAVVTPPEP--VQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVS 115 + + S + PP + + + D + + + Sbjct: 126 ARWFQRFHESGTLSNPPSEWLSHYAWGGEVIQVDTLEIPDNWKNEEIILQSLGENRFELI 185 Query: 116 LLEEYLRSSPY--------------VMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASK 161 + + + + K I + Sbjct: 186 YQNKVILEGEVGKLAAKQPEGSLHPIKLFVTHLKARPNTHFTLIRRSQGEAIRQLKETLS 245 Query: 162 KKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEK 221 + L+ + +A +++ + V++ + LE + Sbjct: 246 IAEIGKGTGILQLTIESDNRAKAVQIVNEIANTYLQQNVEQKSAESQKTLEFLEKQLPAL 305 Query: 222 LAQDRIKTKNQLDANIQ--------------------RLNYSLDIANAAGIKKPVYSNGQ 261 Q T D I+ +L +++ + Sbjct: 306 KEQLETTTNALNDYRIREGSINLDLETQNILTGTVELNTQITLLQQKRDELRQRFTESHP 365 Query: 262 AVKDDPDFSISLGA----------DGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKA 311 V L E + I + DV + + A Sbjct: 366 NVVAIDKQISRLQTQIHALDKKIGKLPETQQIILRLSRDVEVNAELYTTLLNHAQTIRVA 425 Query: 312 HVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAM 371 V + P P K +I+ ++ + G M+ +R +++ ++ Sbjct: 426 KAGTV--GNVRIVDYAIPPDLPIKPKKTLIMGIALMAGLMLGVIFAFIRRSLSRGVENPD 483 Query: 372 MADHLV 377 + + + Sbjct: 484 IIEKSL 489 Score = 65.1 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 33/304 (10%), Positives = 93/304 (30%), Gaps = 18/304 (5%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTP-PEPV 77 + +++EIDL L+ +L K+ + + F G IS + + + +++ Sbjct: 9 PSDQNSDEIDLGELLDILADNKQLIFIITFITCMIGAAISLLSLPIYKADSLLQVRENTQ 68 Query: 78 QWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVM--------- 128 E S + ++ + + I +L + + + + Sbjct: 69 SMVEQLDSLSTFFETKTPVQAEIELIKSRMILGKTIRNLSLDIIATPRFFPFIGAAAARW 128 Query: 129 -DQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTV 187 + E+ + + + + + + D S E Sbjct: 129 FQRFHESGTLSNPPSEWLSHYAWGGEVIQVDTLEIPDNWKNEEIILQSLGENRFELIYQN 188 Query: 188 LSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIA 247 + L K+ ++ +++ K + + I++L +L IA Sbjct: 189 KVILEGEVGKLAAKQPEGSLHP-IKLFVTHLKARPNTHFTLIRRSQGEAIRQLKETLSIA 247 Query: 248 NA---AGIKKPVYSNGQAVKDDPDFSISLGADGIER--KLEIEKAVTDVAELNGELRNRQ 302 GI + + K + + +++ + + ++ + L +L + Sbjct: 248 EIGKGTGILQLTIESDNRAKAVQIVN-EIANTYLQQNVEQKSAESQKTLEFLEKQLPALK 306 Query: 303 YLVE 306 +E Sbjct: 307 EQLE 310 >UniRef50_Q5P6W3 Putative uncharacterized protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P6W3_AZOSE Length = 396 Score = 75.5 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 55/330 (16%), Positives = 109/330 (33%), Gaps = 51/330 (15%) Query: 12 AHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVV 71 P+ P A +NEIDL L+SVLW+ K ++ A G+ S + K+ + + Sbjct: 2 QSTPNNPPA-HEDNEIDLRQLVSVLWKQKLLIVGAGVLCAGVGVGASLLST-KYVAEGLF 59 Query: 72 TPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQ- 130 P + F+ F + L++YL+ + + + Sbjct: 60 LTPGVSATN-----------------------YKRFVSVFSNGPRLQQYLQDTGALATRD 96 Query: 131 ------LKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSE-- 182 L E + ++ R A ++K + + DEP + F+ Sbjct: 97 GALLFGLAENQDRLVETLRPEFAFTDKDQKAFGVKVAEDDEPGAMIGVRIQFSHKEPTGG 156 Query: 183 EAQTVLSGYIDYISTLVV--KESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 T+L+ Y+ V K L + + + +L+ D T+ + Sbjct: 157 TPVTLLAEYVRDTVIRVNFEKALLARCADFRTREQELRNAQLSNDFAITQEER------- 209 Query: 241 NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAV-TDVAELNGELR 299 AA +++ + N A D +SL + V +++ + +L Sbjct: 210 -------RAATLREIIARNPGAAVSDNRQIVSLEKGSERFLSPAAQLVASEIQIADMKLA 262 Query: 300 NRQYLVEQLTKAHVNDVNFTPFKYQLSPSL 329 + E+ A D + P+ Sbjct: 263 EVRRERERTASALKRDYYCQAQQALQQPTT 292 >UniRef50_Q13QA8 Protein-tyrosine kinase n=3 Tax=Burkholderia RepID=Q13QA8_BURXL Length = 736 Score = 75.1 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 42/304 (13%), Positives = 97/304 (31%), Gaps = 19/304 (6%) Query: 77 VQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKI 136 + T+ ++ L + A F S L LRS+ + ++ K++ I Sbjct: 193 GDVGVAAQGMTRYGLVQLKVNRMVARAGTSFNLARASTQLTAADLRSALDISEKAKQSGI 252 Query: 137 DELDLH--RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSG---- 190 + L A + + + D S L F + + L Sbjct: 253 IAISLEGADAAKTAATVNRVASIYVQRNVDRKSAQAQQMLQFLGEQLPQLRGDLDEAEAK 312 Query: 191 YIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAA 250 Y + + + R L+ + + + ++ Q + A A Sbjct: 313 YNAFRTENGTVDLEAEGRLLLQSIVDSQTRLVELQQQRSALAQRYTTQHPSVQAIDAQIA 372 Query: 251 GIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTK 310 +KK + + V P+ ++ L + + V +L +L + + L Sbjct: 373 DLKKRQGAFNEKVAALPNVQ--------QQALRLMRDVRVNTDLYTKLLDSTQQLHVLKA 424 Query: 311 AHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDA 370 + +V + + + P K ++++LS +IG ++ C +R + + Sbjct: 425 GQLGNV-----RTVDYAEVAERSVKPKKTLVIVLSGVIGLLLGCSIAFVRSTLNRGLETP 479 Query: 371 MMAD 374 + Sbjct: 480 SEIE 483 Score = 62.7 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 39/320 (12%), Positives = 97/320 (30%), Gaps = 15/320 (4%) Query: 21 SPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQ 80 +P EI L ++I++L + ++ A G+ +F+ + + ++ Q Sbjct: 12 APGEKEITLSDVIALLGENRLLIVLTTAAMLFLGVAYAFVATPLYKADVMIQVDSDPGNQ 71 Query: 81 ELEKSFTKLRVL---DLDIKIDRTEAFNLFIKKFQSVSL---LEEYLRSSPYVMDQLKEA 134 L L L + + + + SL ++ R P + + Sbjct: 72 TLNDKLGDLASLFQSKASTDAEIELIRSRMVVEETVRSLHLDIKATPRRFPLIGALIARY 131 Query: 135 KIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTS-WTLSFTAPTSEEAQTVLSGYID 193 + + ++ +LY + L+ + E + + Sbjct: 132 MSAGAPANPVLGMSRFAWGGESLEVTQFDVPVTLYDQSFKLTVGLNQTFELRDSDGRAVL 191 Query: 194 YISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDI---ANAA 250 + V + + +++K + + L +LDI A + Sbjct: 192 HGDVGVAAQGMTRY-GLVQLKVNRMVARAGTSFNLARASTQLTAADLRSALDISEKAKQS 250 Query: 251 GIKKPVYSNGQAVKDDPDFSISLGADGIERKLEI--EKAVTDVAELNGELRNRQYLVEQL 308 GI A K + + + ++R ++ +A + L +L + +++ Sbjct: 251 GIIAISLEGADAAKTAATVN-RVASIYVQRNVDRKSAQAQQMLQFLGEQLPQLRGDLDE- 308 Query: 309 TKAHVNDVNFTPFKYQLSPS 328 +A N L Sbjct: 309 AEAKYNAFRTENGTVDLEAE 328 >UniRef50_B8D0N1 Lipopolysaccharide biosynthesis protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D0N1_HALOH Length = 474 Score = 75.1 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 52/447 (11%), Positives = 127/447 (28%), Gaps = 90/447 (20%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVV----TPPE 75 EIDL + +L + K ++A+ G +++ P + S A++ TP Sbjct: 5 PHNYEYEIDLTEYLGILNKRKWLILAITILAGVMGYILTSYKPAVFQSDALLMIDETPTT 64 Query: 76 PVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSS-------PYVM 128 Q + + ++ + + + F + +YL ++ + Sbjct: 65 LNQIELSPFNNNNRDLITYSKLLKTRKLLKKVSQHFDENKVSVKYLITNLNIEIIPDTRL 124 Query: 129 DQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKD-EPSLYTSWTLSFTAPTSEEAQTV 187 ++ D + + I L E+ + N K Y + L + + + Sbjct: 125 IKISIKHTDPVIARQIISYLIEEFIINNRNLKKSATVNARNYVARQLEKVSRDLKNIEAE 184 Query: 188 LSGYID----------------------------YISTLVVKESLENVRNKLEIKTQFEK 219 + Y + I+ + +L ++ NKL+ + Sbjct: 185 VRHYKEENKSLVLSNFTQKIMQSMLDLEENLAEVEINIKTHRAALNHLYNKLQSSRELIL 244 Query: 220 EKLAQDRIKTKNQLDANIQRLNYSLD----------------IANAAGIKKPVYSNGQAV 263 + +L + L LD A I + + V Sbjct: 245 SSKTLSKNPAYTELKNRLTELEIELDSLTTVYTDKHPEIIKLKAEKKSILNEISNTLGEV 304 Query: 264 KDDPDFSISLGADGIERKLEIEKAV-----TDVAELNGELRNRQYLVEQLTKAHVN---- 314 ++ + + ++++L + LN + + + EQL K + Sbjct: 305 ITSTIYTTNPVYNNLKQELVKLETELTSLKAQKESLNIQFQKIKAKTEQLPKKELEYSRL 364 Query: 315 -------------------------DVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIG 349 + + P +P GP + + ++ ++G Sbjct: 365 LRKLEVSEKLYTMLLTRYQELKITEAMKVSDIITVDPPVVPESPVGPNMKLNLAIAIIMG 424 Query: 350 GMVACGGVLLRYAMASRKQDAMMADHL 376 V + + + Q + + Sbjct: 425 LFVGVFIAFILEFINNTIQRVEEIEEI 451 >UniRef50_B6AWP6 Lipopolysaccharide biosynthesis n=1 Tax=Rhodobacterales bacterium HTCC2083 RepID=B6AWP6_9RHOB Length = 439 Score = 75.1 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 47/386 (12%), Positives = 108/386 (27%), Gaps = 51/386 (13%) Query: 29 LLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTK 88 + I V+ R + +V + + P + + A + + Sbjct: 7 IGEFIGVIRRRFFLMAFIVALGTLGAIYYALNQPSLYETHAALQIES--------AAVAS 58 Query: 89 LRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVAL 148 L ++ + L + D ++++ RA V + Sbjct: 59 QGTGAAVTTNGAAHRLTLIEQRLMARDSLVRVVDKLQLFSDGPPIPLNEKVNALRASVQI 118 Query: 149 SEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVR 208 ++ + ++ + +S T A ++ + ++ + K +E Sbjct: 119 AQ-----IKDGAQAWQPNITPSGLLISVTFGDPILAASIANEFLGSVLEENRKRKVERSE 173 Query: 209 NKLEIKTQFEKEK---------------------------LAQDRIKTKNQLDANIQRLN 241 L + E+ +D++ T + + I+R Sbjct: 174 GALAFFSSEEERLGKEILLIEEEIAGFKSVNSDALLGGIASQRDQLGTLRETELEIEREI 233 Query: 242 YSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAV-TDVAELNGELRN 300 + +NAA ++ V A ++ I D IE + V + LN LR Sbjct: 234 IAAS-SNAARQRQSVVDQQVARLEEQKSLIQQRIDRIEMVISAAPEVERALGSLNRRLRQ 292 Query: 301 RQYLVEQLTKAHVND---------VNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGM 351 Q +T F + +P P + + +L + G Sbjct: 293 LQDQYSVITTGRAEAEMGQLLDTADQSERFVVLETALVPEYAVSPSRKKLAMLGFIGSGF 352 Query: 352 VACGGVLLRYAMASRKQDAMMADHLV 377 +AC M + + + + Sbjct: 353 LACLVAFGLEMMNPAIRTSAQLERQL 378 >UniRef50_B2JKP4 Exopolysaccharide transport protein family n=1 Tax=Burkholderia phymatum STM815 RepID=B2JKP4_BURP8 Length = 744 Score = 75.1 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 37/287 (12%), Positives = 89/287 (31%), Gaps = 14/287 (4%) Query: 80 QELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEE-YLRSSPYVMDQLKEAKIDE 138 ++ L V +D + T + + ++ L + + A Sbjct: 197 ADVPGGAIDLLVSGIDGRPGVTFELSRSSELSATLDLQSRLMISEKGKESSVIGAALEGG 256 Query: 139 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 198 + +++ + + + + ++E ++ + + Y + S Sbjct: 257 DPVKTSVILNAIGNEYMRQKVQRTQEEAEKSIAFLNQQLPELKAKLEQAEEEYNQFRSEH 316 Query: 199 VVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYS 258 + L+ Q + + + QLDA N +L IA +++ + Sbjct: 317 GAVDLGAEAAALLQSTAQAQNRIAELRQQRA--QLDARYMPDNPAL-IATNGQLEEAEKA 373 Query: 259 NGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNF 318 + + L +++ V + L N + + V++ Sbjct: 374 LSELAVQTRRLP-----PLEQSVLRLQREVQVDTNIYTNLLNTKEQMRLAKAGKVSNA-- 426 Query: 319 TPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 + S ++P P + +IV+ +L G V VL R M S Sbjct: 427 ---RLIDSAAVPEGPIRPKRTLIVVAGSLTGIFVGSAYVLFRRRMNS 470 Score = 59.3 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 31/285 (10%), Positives = 87/285 (30%), Gaps = 8/285 (2%) Query: 31 NLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVV-TPPEPVQWQELEKSFTKL 89 L+ L+ +KT++ + F GL+ + + + + ++ + + + Sbjct: 26 KLLDTLYEGRKTIVIIAALFTLVGLVYAMLARPVYQADMLIHVEDSDGAAKNALADVSAM 85 Query: 90 RVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALS 149 + + + + ++V + Y+ +SP + L++ Sbjct: 86 FAVKTAASAEIEVLRSRMV-VSRAVEATQLYINASPRYFPVVGRWMATHLNVSSWSGRGG 144 Query: 150 EKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRN 209 + +Y + E T+ ID + + Sbjct: 145 YAWGDEAITVAHFNVPDRMYGVPFIITLKGNGE--YTLAHNGIDLPGRVGETLHADVPGG 202 Query: 210 KLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKP--VYSNGQAVKDDP 267 +++ + +++ + L L I+ G Sbjct: 203 AIDLLVSGIDGRPGVTFELSRSSELSATLDLQSRLMISEKGKESSVIGAALEGGDPVKTS 262 Query: 268 DFSISLGADGIERKLE--IEKAVTDVAELNGELRNRQYLVEQLTK 310 ++G + + +K++ E+A +A LN +L + +EQ + Sbjct: 263 VILNAIGNEYMRQKVQRTQEEAEKSIAFLNQQLPELKAKLEQAEE 307 >UniRef50_B2TDM9 Exopolysaccharide transport protein family n=1 Tax=Burkholderia phytofirmans PsJN RepID=B2TDM9_BURPP Length = 747 Score = 74.7 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 34/253 (13%), Positives = 89/253 (35%), Gaps = 8/253 (3%) Query: 127 VMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQT 186 + K ++DE ++ + + + + D ++Y ++ +E++ Sbjct: 235 LEQLQKGLQVDEQGNKSNVLGVMLEGRDPVLVTNILNDIGAVYVRQNVNEKGANAEKSLN 294 Query: 187 VLSGYIDYISTLV--VKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSL 244 L + + +E+ RN + E+ +L + + +++R L Sbjct: 295 YLEQQLPGAKRQMEQAEEAYNTYRNSHGLLDADEESRLILRQATEADSRLYDLKRQRQDL 354 Query: 245 DIANAAGIKKPVYSNGQAVKDDPDFSISLGAD---GIERKLEIEKAVTDVAELNGELRNR 301 +A+ V + Q + + SL A + + + D+ + Sbjct: 355 -MAHLTAEHPSVVAIDQQIASTNKYVESLAARVKSMPTAEQGAIRLMRDMRMSSDMYSAL 413 Query: 302 QYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRY 361 + ++ L + + +P + P K +++++SA++G VA G LR Sbjct: 414 RSNIDTLRLVKAGQS--ASVQLLDTADVPERPVKPAKTLVLLISAVLGLFVAIGLAFLRD 471 Query: 362 AMASRKQDAMMAD 374 + + D + Sbjct: 472 YLFKGESDPEELE 484 Score = 58.9 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 44/302 (14%), Positives = 94/302 (31%), Gaps = 11/302 (3%) Query: 21 SPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQ 80 S N+E D ++I L +K + A+ AF G L +F + ++ + + Sbjct: 12 SERNDEFDPGSIIDTLINHRKMIAAITMAFILVGALYAFCATPIYRASISIRVEDNSPTA 71 Query: 81 ELEK----SFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKI 136 + + + Q+V L+ Y+ + P + L Sbjct: 72 LPDSKDLVRNASSLFQEKSSAESEMQILRSKAIAMQTVDYLKLYIEAEPKRLPVLGGLIA 131 Query: 137 DELD--LHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDY 194 D + I + + + + P + TA T + Q G Sbjct: 132 RHTDSRMTPGIFGWGGFVWGDESISVSTFEVPRKQEGNAYTVTALTGGQYQLRGPGLEQP 191 Query: 195 ISTLV-VKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIK 253 ++ V V E E + + + + T++ +++L L + Sbjct: 192 VTGRVGVDEQFETSHGPVNLLVSKIDGESGAEFKLTRHSRQQALEQLQKGLQVDEQGNKS 251 Query: 254 KP--VYSNGQAVKDDPDFSISLGADGIERKLEI--EKAVTDVAELNGELRNRQYLVEQLT 309 V G+ + +GA + + + A + L +L + +EQ Sbjct: 252 NVLGVMLEGRDPVLVTNILNDIGAVYVRQNVNEKGANAEKSLNYLEQQLPGAKRQMEQAE 311 Query: 310 KA 311 +A Sbjct: 312 EA 313 >UniRef50_B3QV13 Lipopolysaccharide biosynthesis protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QV13_CHLT3 Length = 251 Score = 74.3 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 26/236 (11%), Positives = 77/236 (32%), Gaps = 10/236 (4%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQEL 82 + +I+LL + ++L K +++V +L + + ++ P + ++ Sbjct: 3 EDEKINLLEVWNILIGRKVIILSVTLFVQFLTVLYALFATPIYRGEVLLAPAQEDNRSKM 62 Query: 83 EKSFTKLRVLDLDIKIDRTEA----FNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 + L D + +I +S + + +++ + ++ + Sbjct: 63 SILAAQYGALASLAGFDFGGLNSNKIDEYIALIKSRAFIADFINEENLMPILFEDDWNKD 122 Query: 139 LDL---HRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 195 + + + K + D+ +LS S A + + Sbjct: 123 ENKWMVEKNDIPTIGKAYELFSKDIITIDKDKESGLVSLSIDWRDSVLAANWANKIVKKF 182 Query: 196 STLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAG 251 + + +++ + L+ + + ++ KN L I+ +L IA Sbjct: 183 NNYQKRVQVQDSKKSLDFINKQLE---NTSIVENKNTLYKLIEMNTKTLMIAEITD 235 >UniRef50_Q92VQ0 Putative tyrosine-protein kinase n=1 Tax=Sinorhizobium meliloti RepID=Q92VQ0_RHIME Length = 632 Score = 74.3 bits (180), Expect = 8e-12, Method: Composition-based stats. Identities = 48/381 (12%), Positives = 112/381 (29%), Gaps = 26/381 (6%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQW 79 + I ++ S + + +MA +T+ + + Sbjct: 18 PGGDSEFIGFADITSFVRQRIFLIMAFPLLGLLGAGFSLATTDSIFTARTQILI--EPKI 75 Query: 80 QELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDEL 139 EL + + L LD T+ L +K + + E L +P + ++ + Sbjct: 76 PELLQRQSGEINLSLDTSQVETQLAVLRSEKIALMVIEELDLVDNPRFKSVSSPSMVERV 135 Query: 140 DLHRAIVALSEKMKA-------------VDDNASKKKDEPSLYTSWTLSFTAPTSEEAQT 186 + + A + + D + K L T E+ Sbjct: 136 GRIKEMAADMLALDGDPQHQAMPKPASPIADRSETKAVIAQLSEFERRRIVVETFRESLG 195 Query: 187 VLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQ-----LDANIQRLN 241 V + Y + + + K+ T + + + L+ I+ + Sbjct: 196 VQRVGVSYAIDITFQSHDPALAAKVANATAAAFVREQLETRAAAAREGVAWLEKRIEEVR 255 Query: 242 YSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNR 301 +++A + + + + + + + + EL Sbjct: 256 TQMNLATQVTQEFRAKHDYSVGRQLGATIVDGEVVASGQGEGVTRNGPTLEELEVTADTY 315 Query: 302 QYLVEQLTKAHVNDVNFTPF-----KYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGG 356 + + E L A + VN P+ + + P+ P K +++ L L G M G Sbjct: 316 RKMYESLLAAFTSSVNQQPYLIADARVITPATRPLAASHPRKKLVLALGGLSGLMAGFGL 375 Query: 357 VLLRYAM-ASRKQDAMMADHL 376 R+ + + + + D L Sbjct: 376 AFARHTLDRTIRTSRQVRDEL 396 >UniRef50_Q7UF18 Similar to type 8 capsule gene Cap8B n=1 Tax=Rhodopirellula baltica RepID=Q7UF18_RHOBA Length = 785 Score = 73.9 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 48/340 (14%), Positives = 104/340 (30%), Gaps = 26/340 (7%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 M+ S +D ++ +L R + + + A AG+ + Sbjct: 1 MAESAKPTNRLPSRSPSSSTSDGEETLD---VLQILSRQRWLIAFLSIAGLAAGVAYALN 57 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 + S A V + L + + ++ QS ++ E Sbjct: 58 AQVWYESNAKVLINQKS---------AGLGGNSTGTDMVDEDILANHMELIQSRMIVGEA 108 Query: 121 LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT 180 L + V E+ +DE AI + +++ V K SL ++FT Sbjct: 109 LEQTELVNLPSIESHLDEKT--DAIDYVIDQLSIVKGGDGSAKTARSLN----ITFTHTE 162 Query: 181 SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 ++A+ +L+ + ++ + E V + K ++ + + + + Q Sbjct: 163 PDDAKRILTAVMKRYEQFIIDQV-EQVMGRANEMVNKAKTEVEAELVAAEQEHLKARQEA 221 Query: 241 NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN 300 ++ I + Y Q D D S + R E K + + + +L Sbjct: 222 PLFFQGEGSSNIYQDRYRRLQDELLDLDIQESTVKTRLTRVDETLKEMDESTDPIDQLDK 281 Query: 301 R-------QYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKK 333 + +N N FK + + + Sbjct: 282 LALIDSESLERLGVFAGLQMNSANTAEFKAAMPAKMEEAR 321 >UniRef50_A6UI93 Lipopolysaccharide biosynthesis protein n=2 Tax=Sinorhizobium RepID=A6UI93_SINMW Length = 662 Score = 73.9 bits (179), Expect = 9e-12, Method: Composition-based stats. Identities = 43/325 (13%), Positives = 105/325 (32%), Gaps = 14/325 (4%) Query: 27 IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSF 86 + L +L +++ R + +++F + SF +P+ +T+++ V + Sbjct: 31 VGLFDLWAIVKRRFWFLASIIFVCTLLSAIASFSIPKSYTASSEVVLERKD--VRPFATD 88 Query: 87 TKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIV 146 L +D D TE L +KF + L + P + + ++ Sbjct: 89 AALTSIDRDRSAAETEMDVLQSRKFAGRIVDRLELVNDPTFNPYAPGG---DKSSDQGLL 145 Query: 147 ALSEKMKAVDDNASKKKDEPSLYTSWT--LSFTAPTSEEAQTVLSGYIDYISTLVVKESL 204 + + V ++ + P + T +S E ++T S + I T + Sbjct: 146 RYVQDLIGVRRASTSARVIPDIKTQRDHAISALLSQFEVSRTGESLAVRLIVTNQNPKLA 205 Query: 205 ENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVK 264 + + N + + QD Q N L + + + + + Sbjct: 206 QQIANTIASLYVEASLEFKQDERVADKQRALNTGGAVAFLRQSMTQPLLITLRNEEARLL 265 Query: 265 DDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQ 324 + + ++ + + + + + V+++ + + Sbjct: 266 QSRAELAAKYGKNHPQMIDADSQIAGIRSM------IEDEVQRILSDLEAESLKPSARIV 319 Query: 325 LSPSLPVKKDGPGKAIIVILSALIG 349 + LP P +I I +AL G Sbjct: 320 STAELPNSPSFPKPGLI-IPAALAG 343 >UniRef50_C6NU30 Lipopolysaccharide biosynthesis n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU30_9GAMM Length = 276 Score = 73.5 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 59/215 (27%), Gaps = 9/215 (4%) Query: 7 KQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWT 66 + + + P +EI L L LWR K V+ F L + Sbjct: 4 QPITTPPAIQIIASPPPEDEISLWELWERLWRGKWLVVGSSVVFLALAGLYLATSTTIYQ 63 Query: 67 SAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLL--------E 118 S A+V S +V + ++ EA + + E Sbjct: 64 SKAIVQVGMVAGQPLANTSLLAQKVYNNYRPVNTIEAKKQLPRIHSASVEKSDANLLELE 123 Query: 119 EYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEP-SLYTSWTLSFT 177 Y RS L L + A + K +++ + T Sbjct: 124 SYGRSPEEAQSYLHSIVQSLLSREQDRYAQTLKFHQTQLKELQRQYRALETSSPSDTRHT 183 Query: 178 APTSEEAQTVLSGYIDYISTLVVKESLENVRNKLE 212 A +L + + + + + N N+L Sbjct: 184 KHREPSALLLLEQSMRFSEASSLLQQIANAENQLS 218 Score = 46.6 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 41/272 (15%), Positives = 92/272 (33%), Gaps = 19/272 (6%) Query: 118 EEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFT 177 E+ + + P + DE+ L L V ++ LY + + + Sbjct: 3 EQPITTPPAIQIIASPPPEDEISLWELWERLWRGKWLVVGSSVVFLALAGLYLATSTTIY 62 Query: 178 APTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANI 237 + +++G ++L+ ++ N R I+ + + ++ ++ + + Sbjct: 63 QSKAIVQVGMVAGQPLANTSLLAQKVYNNYRPVNTIEAKKQLPRIHSASVEKSDANLLEL 122 Query: 238 QRLNYSLDIANA--AGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDV---- 291 + S + A + I + + S Q ++R+ + + Sbjct: 123 ESYGRSPEEAQSYLHSIVQSLLSREQDRYAQTLKFHQTQLKELQRQYRALETSSPSDTRH 182 Query: 292 ---AELNGELRNRQYL--------VEQLTKAH--VNDVNFTPFKYQLSPSLPVKKDGPGK 338 E + L Q + ++Q+ A ++ N P + PS P K Sbjct: 183 TKHREPSALLLLEQSMRFSEASSLLQQIANAENQLSPANTRPPEVVRQPSYDPVAVSPKK 242 Query: 339 AIIVILSALIGGMVACGGVLLRYAMASRKQDA 370 +++IL+ G V VLLR + S A Sbjct: 243 LVVLILALFGGLFVGILVVLLRSSRKSNDDSA 274 >UniRef50_A3W0H6 Chain length determinant protein, putative n=2 Tax=Roseovarius RepID=A3W0H6_9RHOB Length = 432 Score = 73.5 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 35/383 (9%), Positives = 106/383 (27%), Gaps = 50/383 (13%) Query: 31 NLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLR 90 +LI +L R ++ V A ++++ P+ + + AV+ P +L Sbjct: 9 DLIRLLHRKLWLIVLVAVVGAILSIIVALNQPKVFQATAVIQIETPQVGSDLAGQ----- 63 Query: 91 VLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSE 150 I D + L ++ + L + + + +++ R ++ Sbjct: 64 ----TIATDANQRLQLIEQRLMARDNLVKVIERHGLFANARDMPMAEKVHQLRISARIT- 118 Query: 151 KMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVK--------- 201 + + +++ +A V + +++ + + Sbjct: 119 ----PITVGVPGMGPATTPSGLSVTVNLNDPVKAAEVANDFVETVIAENRERRMALVRET 174 Query: 202 -ESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAA--GIKKPVYS 258 + ++ + + +A + L +I + L N + + + + Sbjct: 175 FDFFSAEETRVSARIAEVEGVIADFKRANAESLPTSITPVREELRTLNETLLALDQQIIT 234 Query: 259 NGQAVKDDPDFSISLGADGIERKLEIE---------------KAVTDVAELNGELRNRQY 303 + + + + + ++ L L Q Sbjct: 235 LETEASRQRQEVFARQIGQLTEQRALVAGRIAENEAALAAAPRVERELGALTRNLTQLQD 294 Query: 304 LV---------EQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVAC 354 + ++ + F+ + P + +VI A+ + Sbjct: 295 QLSTITTSRVEAEMASVLESRQQQERFEILETAIPPEFPVSASRKKLVIAGAVASLVAGI 354 Query: 355 GGVLLRYAMASRKQDAMMADHLV 377 G +L M + A + + Sbjct: 355 GFAVLLEIMNPAIRSAAQLEQEL 377 >UniRef50_Q3K9H3 Tyrosine-protein kinase n=4 Tax=Pseudomonadaceae RepID=Q3K9H3_PSEPF Length = 740 Score = 73.5 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 71/219 (32%), Gaps = 17/219 (7%) Query: 159 ASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFE 218 S + + + L +A L+ Y + ++ L E Sbjct: 279 TSAEAAQSLAFLQSQLPQVKRDLAKASDALNAYQTHGK---TVNISLETQSVLGQSVALE 335 Query: 219 KEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGI 278 + + Q Y + + + S V+D P L Sbjct: 336 TRISELKLQQAEMDRKFTKQHPAYRALMTQIGELTQQQRSLEGKVQDLPATQQEL----- 390 Query: 279 ERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVK-KDGPG 337 L + + V +++ +L N+ ++ + V +V + + + + P Sbjct: 391 ---LNLTRDVEVASQIYTQLLNKSQELDIIRAGAVGNV-----RLVDTADVDLTSPVKPK 442 Query: 338 KAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADHL 376 KA+IV+++ +G V VLLR +++ + + L Sbjct: 443 KALIVLIATFLGAFVGVALVLLRKSLSKGLEGPEAIEQL 481 Score = 64.7 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 35/291 (12%), Positives = 78/291 (26%), Gaps = 8/291 (2%) Query: 22 PSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQE 81 + IDLL + L K + A AF G+ + + + + A+V Sbjct: 12 NDQDSIDLLGIFGSLIDQKWLIGAFTGAFMMTGVAYAILATPVYLANALVQVEPKKNDML 71 Query: 82 LEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQ-----LKEAKI 136 + + + + L + + + Sbjct: 72 GFSDLNSMLGGQSPSVTEIGIIKSRAVIGKTVDDLRLDIDVTPNTFPLIGGFLSRRYRGE 131 Query: 137 DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 196 EL + LS + K + P L+ A Q +L + + Sbjct: 132 TELSVAPPRFGLSSYAWGGERLEFAKLNLPKELLGKKLTLIAGEQHRFQ-LLDDNDNLLV 190 Query: 197 TLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPV 256 V E+ ++ +E + + IQ +LDI+ + Sbjct: 191 DGVAGEAF--AQDGVEGQIAQLLANPGTRFEVVRYPRIVTIQGYQDALDISEQGKESGII 248 Query: 257 YSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQ 307 + I + + + + A+ L+++ V++ Sbjct: 249 RLALASSDAAEAVKILNKIASLYVDQNVRRTSAEAAQSLAFLQSQLPQVKR 299 >UniRef50_A1WX76 Lipopolysaccharide biosynthesis n=3 Tax=Ectothiorhodospiraceae RepID=A1WX76_HALHL Length = 514 Score = 73.1 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 41/294 (13%), Positives = 102/294 (34%), Gaps = 35/294 (11%) Query: 33 ISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL 92 + WR + ++ + + G LP + +++ V L T Sbjct: 15 LRATWRRRWWILPIAWLVCIPGWAYIHALPDTYEASSEVYVDTDSVLGPLLGGMTV---- 70 Query: 93 DLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKM 152 + D + N+ S L E R + + + D+ RA+ +L + Sbjct: 71 ----RPDAEQRMNMITSTLLSRDNLREIARQADL------DILLGYDDIDRAVDSLQD-- 118 Query: 153 KAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLE 212 + + + +T+SF+ E A V + L ++ L + R L Sbjct: 119 ----IDLRGGDESGAGDNIYTISFSDEDPEVAYRV----VRQTGDLFMERGLGDPRTDLT 170 Query: 213 IKTQFEKEKLAQ--DRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFS 270 F + +L + R++ K + + +R + + +A + + + + +F Sbjct: 171 ASRDFIENQLDRYGTRLRAKEEQLEDFRREHSEVLLAGGDFYSRLRAERERLAEAELEFE 230 Query: 271 ISLG-ADGIERKLEIEKAVTDV--------AELNGELRNRQYLVEQLTKAHVND 315 + + + +LE + + EL+ + N + +++L + + + Sbjct: 231 QAQSHYESLIAQLEGDGDHPGLVQPPEFENPELDARISNLESELDELRRQYTDQ 284 Score = 51.2 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 30/303 (9%), Positives = 71/303 (23%), Gaps = 13/303 (4%) Query: 75 EPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEA 134 + L + + LE++ R V+ + Sbjct: 152 QTGDLFMERGLGDPRTDLTASRDFIENQLDRYGTRLRAKEEQLEDFRREHSEVLLAGGDF 211 Query: 135 KIDELDLHRAIVALSEKMKAVD------------DNASKKKDEPSLYTSWTLSFTAPTSE 182 + + + D +P + + L E Sbjct: 212 YSRLRAERERLAEAELEFEQAQSHYESLIAQLEGDGDHPGLVQPPEFENPELDARISNLE 271 Query: 183 EAQTVLS-GYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLN 241 L Y D + + + + + E + + L L Sbjct: 272 SELDELRRQYTDQHPDVAHTQRVLEDLREEREEQAVEFSESLMASPVDRVGLGQPDHPLQ 331 Query: 242 YSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNR 301 L + + Q ++ ++S IE + +V + + Sbjct: 332 LELAESESRVASLETRVEEQRLRVQELEAVSDDVPEIESEYSRLTRDYEVLQNSYSELRD 391 Query: 302 QYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRY 361 + LT + + F+ P P + P + ++ ++G G L Sbjct: 392 RLEQAVLTGEVESGADSVDFRVLQPPEQPSEAAAPNRPLLGSAVLVLGLGAGTGFAFLLA 451 Query: 362 AMA 364 + Sbjct: 452 QIR 454 >UniRef50_A4BR88 Putative uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BR88_9GAMM Length = 343 Score = 72.8 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 44/350 (12%), Positives = 101/350 (28%), Gaps = 23/350 (6%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQW 79 AS ++EI L++L +L R K T+ V+ GL + P ++ + E + Sbjct: 6 ASDHDDEISLIDLWIILVRRKWTIAGVLLLCVLLGLAWVLVKPPRYQYETAIQIGEVLSG 65 Query: 80 QELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDEL 139 L+ VL + A + + + + + Sbjct: 66 DALQPIEPVGAVLAKIQETYIPLARARLLAADAQGGFKLKARSPEGSALLIVVSGEGVPA 125 Query: 140 DLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLV 199 + L + ++ + + S + T T + + Sbjct: 126 QRSTYLKLLHDVLQQIQVDLSPRFKAARQATEREREGTESRLQ----------QLTAEAK 175 Query: 200 VKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSN 259 + + + + + D + Q + ++R G+ Sbjct: 176 LVQGELERLGSWNQVVERRLQIVRTDLQTLREQRNGLLKR-----------GLSDSADMR 224 Query: 260 GQAVKDDPDFSISLGADGIERKLEIEKAVTD--VAELNGELRNRQYLVEQLTKAHVNDVN 317 + D AD E+ + A D ++ L ++ ++ + Sbjct: 225 LIVLNGDIRTLQETIADLQEQLGKWIPAQRDGILSRLKQNQVDQSTQQLRMQEIEARAAA 284 Query: 318 FTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRK 367 P + L P + G G +I+ L+ ++G M+ +A Sbjct: 285 LQPTRAVLVPQRLPEPIGTGPVVILALAGVLGLMLGVFAAFFTEFLARAN 334 >UniRef50_B2AHI0 Tyrosine-protein kinase n=5 Tax=Cupriavidus RepID=B2AHI0_CUPTR Length = 749 Score = 72.4 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 35/253 (13%), Positives = 77/253 (30%), Gaps = 6/253 (2%) Query: 127 VMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQT 186 + D + I E ++ ++ + + + A+ + + Y L A +E++ Sbjct: 239 IADLQSQLMITERGKQSGVIGVALEGTSAEKTAAILNEIGNEYVEQNLRRKAAEAEKSLA 298 Query: 187 VLSGYIDYISTLVVK-ESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLD 245 L + + + ES N +E Q R Sbjct: 299 FLEAQLPQLKQQLESAESRYNAMRNQRGTIDLNEESRLVLAQSVAAQTKLADLRQRRQEL 358 Query: 246 IANAAGIKKPVYSNGQAVKDDPDFSISLGAD---GIERKLEIEKAVTDVAELNGELRNRQ 302 IA + + + D ++G + + + + + DV ++ Sbjct: 359 IARFTPNHPAIEILDKQIADVNAEIGTVGGKIQRLPDIEQNVLRLMRDVRVSTEMYQSLL 418 Query: 303 YLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYA 362 V+QL + +P++ P + +I S L+G + V+LR Sbjct: 419 NDVQQLRLVKA--SKIGTARLVDPAEVPIRPVKPNRKLIAAASVLLGLLAGTAVVVLRRL 476 Query: 363 MASRKQDAMMADH 375 DA + Sbjct: 477 FDGGVADADEIER 489 Score = 53.5 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 97/301 (32%), Gaps = 25/301 (8%) Query: 28 DLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFT 87 DL + + VL R + T +AV A GLL + + + + +V + + Sbjct: 23 DLTSYVDVLIRYRWTFLAVAAAVMAVGLLFALLSKPVYRADILVQVEDHNTGSVNNNNKP 82 Query: 88 KLRVLDL----DIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKI--DELDL 141 V + E + ++V L+ + +SPY + A + Sbjct: 83 TATVSPVYDVRPAPSTEIELLRSRMVVGKAVDALQLDISASPYYFPVIGAAVAGFNRELS 142 Query: 142 HRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVK 201 + + A + P ++ TA +++ + + + S V Sbjct: 143 QPGLFGRGGYAWGSEAIAVSSLEVPPAMERRLITVTALGNDKYR------VAFASDDAVA 196 Query: 202 ESLENVRNKLEIKTQFEKEKLAQDRIK-------TKNQLDANIQRLNYSLDIA---NAAG 251 E V + + +++Q + ++ I L L I +G Sbjct: 197 EGRVGVPLTVATHSGKVTLEISQLEGRPGAVFHVSRVPRAVAIADLQSQLMITERGKQSG 256 Query: 252 IKKPVYSNGQAVKDDPDFSISLGADGIERKL--EIEKAVTDVAELNGELRNRQYLVEQLT 309 + A K + +G + +E+ L + +A +A L +L + +E Sbjct: 257 VIGVALEGTSAEKTAAILN-EIGNEYVEQNLRRKAAEAEKSLAFLEAQLPQLKQQLESAE 315 Query: 310 K 310 Sbjct: 316 S 316 >UniRef50_UPI000182721C cryptic autophosphorylating protein tyrosine kinase Etk n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI000182721C Length = 732 Score = 72.4 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 35/327 (10%), Positives = 98/327 (29%), Gaps = 20/327 (6%) Query: 54 GLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQS 113 L+++ +++ + + L K+ + V +D ++ K Sbjct: 153 TLVLTVQAQGQYSLDGDNFHAQGAVGKPLAKAGVYVNVQSIDAEVGTEFTLKTLTKLEAI 212 Query: 114 VSLLEEYLRSSPYVMDQLKE---AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSL-Y 169 +L + + + D + + + ++ + + +D SL + Sbjct: 213 NALSKSFTVKEMAKQSGMLALTLTGKDPQKITKVLNGITSNFLKQNIARQEAQDTRSLAF 272 Query: 170 TSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKT 229 L + +EA+ L+ Y ++ + + L+ E + + Sbjct: 273 LERQLPKISGELDEAEERLNAYRKQRDSV---DLTLEAKAILDQVVNVENQLNELTFREA 329 Query: 230 KNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVT 289 + Y + + Q ++++ + + EI + Sbjct: 330 EISQLFKKDHPTY-----------RALREKRQTLENERSRLNHRVSTMPTTQQEILRLSR 378 Query: 290 DVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIG 349 DV ++L + + + + P KA+I++L + G Sbjct: 379 DVESGRTIYLQLLTRQQELNISRSSA--IGNVRIIDQAETQPEPIKPKKALIIVLGFVAG 436 Query: 350 GMVACGGVLLRYAMASRKQDAMMADHL 376 ++ G V+ A+ + + L Sbjct: 437 LALSLGYVIASVALKRGIMSSEQLEPL 463 Score = 52.7 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 34/297 (11%), Positives = 94/297 (31%), Gaps = 17/297 (5%) Query: 16 DYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPE 75 +Y A+P +E+D + L+ + ++ + F +F + + A+V Sbjct: 8 NYGAAAPQASEVDFVRLLGEAIDHRVKIVCITLLFTLLAGAWAFFTTPVYQADALVQIES 67 Query: 76 PVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAK 135 + L+ L D + + I +L L + + Sbjct: 68 KQENGLLKNLGQLDSGLLPDATPEILLLKSRMILGETVENL---GLTQQVHQRVYPVIGR 124 Query: 136 IDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 195 + E R + + K + + + AQ + + Sbjct: 125 LWERIQGRKPGDIQLGWLQIPHQDGKPQTLVLTVQAQGQYSLDGDNFHAQGAVGKPLAKA 184 Query: 196 STLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKP 255 V +S++ E+ T+F + L + ++ ++A +G+ Sbjct: 185 GVYVNVQSID-----AEVGTEFTLKTLTKLEAINALSKSFTVK------EMAKQSGM-LA 232 Query: 256 VYSNGQAVKDDPDFSISLGADGIERKLEIEKAV--TDVAELNGELRNRQYLVEQLTK 310 + G+ + + ++ +++ + ++A +A L +L +++ + Sbjct: 233 LTLTGKDPQKITKVLNGITSNFLKQNIARQEAQDTRSLAFLERQLPKISGELDEAEE 289 >UniRef50_A3X197 Exopolysaccharide transport protein, putative n=2 Tax=Bradyrhizobiaceae RepID=A3X197_9BRAD Length = 452 Score = 72.0 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 45/358 (12%), Positives = 97/358 (27%), Gaps = 12/358 (3%) Query: 32 LISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRV 91 V R + A G+ ++ + P + + + EL ++ Sbjct: 33 YWEVFKRRWIYFIVPFLLIATGGIGVALVWPPTYLAEGKILVQSQQIPSELVRATVTSAA 92 Query: 92 LD----LDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVA 147 + + + + KF+ L + V K KI +DL Sbjct: 93 QERIQVIQQRTMTRDNLIAIADKFKLFPDKRPLLSPTELVALIKKHTKIAPVDLQLDFKQ 152 Query: 148 LSEKMKAVDDNAS-----KKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKE 202 S + + + + + ++ V K Sbjct: 153 RSRFENPTIVFSVGFEYEDAAVASQVANELMTRILDADLRDRTSRATDTTKFLMREVQKL 212 Query: 203 SLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKK-PVYSNGQ 261 +N +I + Q +Q + +L L +A K P+ + Sbjct: 213 QADNAVLDAKIAKARLSHEAKQTASDGSDQPATALSQLKAELLQKSAFYSDKHPMIQLLK 272 Query: 262 AVKDDPDFSISLGAD--GIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFT 319 D + +I AD L+ + + N E + ++ + D Sbjct: 273 KQIDAMEKAIVPNADTNAEFVSLDTLTTQKEALQKNLETATTKLAAARVGENLEKDQQSE 332 Query: 320 PFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADHLV 377 + PS+P + P + + LS ++ G L + + +V Sbjct: 333 KLETIEQPSVPQEPIKPNRPKVAALSIMLAIAGGAGLAFLAEFADKAIRRSSDIHGIV 390 >UniRef50_Q72WQ0 Chain length determinant family protein n=4 Tax=Desulfovibrio vulgaris RepID=Q72WQ0_DESVH Length = 500 Score = 72.0 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 61/417 (14%), Positives = 135/417 (32%), Gaps = 68/417 (16%) Query: 17 YPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEP 76 + +D+ + +L + T A+ G+ +S++LP+++ + + V+ + Sbjct: 9 QQAPGRESGSLDVRRYLVLLRESIVTFCAIAVGVTLLGVAVSYVLPKRYEAHSSVSVEQN 68 Query: 77 VQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL---------LEEYLRSSPYV 127 V EL K L+ ++I + + + L E L + Sbjct: 69 V-VNELVKGIAITPSLEAKLRILKVSILSRKMLLAVIRDLDMDLGRQGEQLEILIENTRK 127 Query: 128 MDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTA--------- 178 ++ + L R A E+ + + +++ E S + S+ A Sbjct: 128 NVEISYEEKKGLFYIRYRDASPERARDFVNALTRRYIEESTASKREESYEATRFLSDQIE 187 Query: 179 ---------PTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKT 229 + +A G I ++ +++E ++ ++LE + E+LAQ I Sbjct: 188 VFQKRIEAAQKAIDAFKSEKGMILSMNESILREEIKETEHRLEETRIRKNERLAQLGILE 247 Query: 230 K---------------------NQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPD 268 K ++ R LD A+G G + Sbjct: 248 KGTGGGRLAEKEAAYKALLGTYTAQHPDVVRAKAELDALRASGGGGGGRKGGVDYQRIKV 307 Query: 269 FSISLGA-------------------DGIERKLEIEKAVTDVAELNGELRNRQYLVEQLT 309 SL ++ +L+ + L E +Y +++ Sbjct: 308 ELESLNEIERIQQELIEKDKRLLQELPAVQTELQALQQARKNETLIYEQLVTRYGQSEVS 367 Query: 310 KAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASR 366 K + LP++ P + +I++ L+GG + G V+L + + Sbjct: 368 KQMELQDKAVSLRIIDPAILPIRPSTPNRPLIMLAGLLLGGAIGAGWVILSDQLFRK 424 >UniRef50_Q65SG7 GumC protein n=2 Tax=Pasteurellaceae RepID=Q65SG7_MANSM Length = 703 Score = 72.0 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 47/324 (14%), Positives = 101/324 (31%), Gaps = 34/324 (10%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ 78 ++ N+ IDL L+ + W K+ ++ A GL+ S + P + + + V E Sbjct: 1 MSKKQNDVIDLTKLLGLFWDQKRIILLSTLLCAGLGLVYSLLAPSIYMATSSVQVEEKYT 60 Query: 79 WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 L+ L ++ I +S +++ + V D ++ Sbjct: 61 GGALQG---------LSSIFEQESTAGTEIAVIKSRAIVSK------AVEDLNLTTEVSP 105 Query: 139 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 198 + EK+ + + P + + ++E +VL + Sbjct: 106 VYPIPFFSKAVEKLMGDKPEITVARFVPKREDAQEYTLVIGSNENEYSVLDEQKQLVLNG 165 Query: 199 VVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYS 258 VV E +N +EI K + K + ++ L +L A A K Sbjct: 166 VVGEKYDN--QDIEILVSQLKGSSGKRFSLKKMEKSDVLE-LVEALQKAVTADEKGKQTG 222 Query: 259 --NGQAVKDDPDFSISLGADGIERKLEIEKA-------------VTDVAELNGELRNRQY 303 +DP++ + + LE A + E+ L + Sbjct: 223 VIELTFKGEDPEYIQKVLHSITQSYLEHSTARNSAEASNSLSFLQKRLPEVRDRLTKSEN 282 Query: 304 LVEQLTKAHVN-DVNFTPFKYQLS 326 + + + + D+ + Sbjct: 283 ELNEYRQKKASVDLELEAKSVLDT 306 Score = 62.4 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 35/292 (11%), Positives = 85/292 (29%), Gaps = 17/292 (5%) Query: 74 PEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKE 133 + + L +K ++ Q +E + + + K Sbjct: 171 YDNQDIEILVSQLKGSSGKRFSLKKMEKSDVLELVEALQKAVTADEKGKQTGVIELTFK- 229 Query: 134 AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYID 193 D + + + ++++ + + S LSF E + L+ + Sbjct: 230 -GEDPEYIQKVLHSITQSYLEHSTARNSAEASNS------LSFLQKRLPEVRDRLTKSEN 282 Query: 194 YISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIK 253 ++ K++ ++ K L N I+ S Sbjct: 283 ELNEYRQKKASVDLEL-------EAKSVLDTLVQLDSNLNALTIRESEISQRFTKRHPNY 335 Query: 254 KPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHV 313 + Q + D+ E + + + + +++L Sbjct: 336 VALLEQRQVLLDEKARLTKQLESLPETQKDTVRLTRNFEVDQQIYTQLSNKIQELDVVKA 395 Query: 314 NDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMAS 365 V + K P K II++L+A++G ++ GGV+L+ + + Sbjct: 396 GAV--GNVRILDEAQTLPKPVAPRKLIILVLTAIVGFLLGSGGVILKSILQN 445 >UniRef50_A6BAV1 OtnB protein (Fragment) n=1 Tax=Vibrio parahaemolyticus AQ3810 RepID=A6BAV1_VIBPA Length = 175 Score = 72.0 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 47/132 (35%), Gaps = 4/132 (3%) Query: 35 VLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVL-- 92 LW K V+A F A + +L + LP + + A++ P E L K +L L Sbjct: 1 ALWEGKWIVIATTFVIAVSAVLYALSLPNIYKADALLAPAESSNGGGLSKMAGQLGGLAA 60 Query: 93 --DLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSE 150 +++ + +L ++ +S + ++ ++ + D + + Sbjct: 61 LAGVNLGASESSQTDLAVQVMRSRQFINTFINKHDLLVPLMAGKDWDLSNNKLILDEELY 120 Query: 151 KMKAVDDNASKK 162 + K Sbjct: 121 NPNTGEWLRDAK 132 >UniRef50_A3I1X6 Putative uncharacterized protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3I1X6_9SPHI Length = 364 Score = 71.6 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 36/352 (10%), Positives = 99/352 (28%), Gaps = 30/352 (8%) Query: 29 LLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ---------- 78 L+NL+ + + ++ V F G + P +++ V+ Sbjct: 16 LVNLVRLGKAKMRVLVGSVILFVLFGFIYYATTPDSYSTQTVLLVESQNANAAGGLGSLA 75 Query: 79 ---WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAK 135 ++ S ++L LD + ++ S + Y S ++ Sbjct: 76 QVAGLSMQGSQSELGTLDPALYPMIIQSKPFLQDLMNSKVKSDLYPDSVSLYKYIIENNP 135 Query: 136 IDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYI 195 + + A+ DN E + + + + P A L+ I Sbjct: 136 DN-----KIYRAVKRPFSIFKDNIIVDDKEREVMNNTSRTQYEPLELYALYQLADGIIAS 190 Query: 196 STLVVKESLE---NVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGI 252 S + + + +K + + + +++ L + + Sbjct: 191 SEGTLLLITTTMPEAKLSYQFSVLVKKLLVEYATRYLQEKQKSHVDYLEVQYEKSEEGFR 250 Query: 253 KKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAH 312 + ++ + + ++ + + A ++ ++ ++ Sbjct: 251 EAQNALTSFKERNQGLYL-----ESLKAREQNLNAEYNLKFELYRTIAKELESSRIEL-- 303 Query: 313 VNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMA 364 + F P +P K P II+ +G + + + Y Sbjct: 304 --NNQKPIFSEIEPPFIPNKPVAPNLLIIISFCIALGFIFGLVFIFILYIRQ 353 >UniRef50_Q0C2Y1 Chain length determinant family protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C2Y1_HYPNA Length = 801 Score = 71.6 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 30/322 (9%), Positives = 99/322 (30%), Gaps = 20/322 (6%) Query: 75 EPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY---LRSSPYVMDQL 131 V + ++ + N ++++ L ++Y +++ ++ +++ Sbjct: 181 SKVAVGRVGATYLLTVDVTSTSPATAARLANEVAEQYRVQQLEKKYDATRKATEWLQERV 240 Query: 132 KEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGY 191 + + + +A+ + ++ + ++ Y + + A+ + Sbjct: 241 SGLREEVEEKEQAVETFRAETGLLEAQGTTLTEQQIAYLTSQRGQAQIEVDRARARYNSM 300 Query: 192 IDYIS-----TLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDI 246 I V + + N L+ + ++A+ + ++ I N DI Sbjct: 301 RRQIDSGAGVEGVSEVINSPLINDLKTQRSELLRRVAELETRVGDRHPDLISARNEVADI 360 Query: 247 ANAAGIK------KPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN 300 + A +G + + + + EL + + Sbjct: 361 DRQMNSEMNRIAANLESELNVARAQLGSIQGEIGRSTSQLRGNNV-NLVRLRELERDAQT 419 Query: 301 RQYLVEQLTKAHVNDVNFTPF-----KYQLSPSLPVKKDGPGKAIIVILSALIGGMVACG 355 + ++E+ + S+P + P KA +I+ ++G +V Sbjct: 420 SRVMLEEFLARSKQTREQDALITADSSILSTASVPFRPASPRKAFNLIIGCVLGLVVGVF 479 Query: 356 GVLLRYAMASRKQDAMMADHLV 377 ++ S + ++ + Sbjct: 480 LAIVAELFDSNISSSEDVENKL 501 Score = 55.4 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 38/312 (12%), Positives = 102/312 (32%), Gaps = 37/312 (11%) Query: 28 DLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFT 87 DL +LI++++R + + I+F + S A++ + Q ++ Sbjct: 28 DLKSLITMVYRRFWLIFTGFITVLSLVVFITFTQTPTYRSQAIIQL-DTNQINVIDLGAL 86 Query: 88 KLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRA--- 144 + TE + K S E+ L P L+ K + + Sbjct: 87 FSGAGGATTSVIDTEVRVIASKTLLSRVAEEQNLIEDPEFNWTLRPKKETFISSSQKAVV 146 Query: 145 -IVALSEKMKAVDDNASKKKDEPSLYTS-------------------WTLSFTAPTSEEA 184 ++ K + ++ E ++ + T+ T+ + A Sbjct: 147 GLMGGDTSEKDPFAGMTPEQKEAEIFEAVVGTLMSKVAVGRVGATYLLTVDVTSTSPATA 206 Query: 185 QTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKN-QLDANIQRLNYS 243 + + ++ + LE + T++ +E+++ R + + + R Sbjct: 207 ARLANE----VAEQYRVQQLEKKYDATRKATEWLQERVSGLREEVEEKEQAVETFRAETG 262 Query: 244 LDIANAAGIKKPVYSNGQAVKDDPDFSISLG---ADGIERKLEIEKAVTDVAE-----LN 295 L A + + + + + + + + R+++ V V+E L Sbjct: 263 LLEAQGTTLTEQQIAYLTSQRGQAQIEVDRARARYNSMRRQIDSGAGVEGVSEVINSPLI 322 Query: 296 GELRNRQYLVEQ 307 +L+ ++ + + Sbjct: 323 NDLKTQRSELLR 334 >UniRef50_Q48452 Putative tyrosine-protein kinase in cps region n=16 Tax=Enterobacteriaceae RepID=YC06_KLEPN Length = 722 Score = 71.6 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 37/266 (13%), Positives = 81/266 (30%), Gaps = 6/266 (2%) Query: 115 SLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 174 +Y+ + D + + + I+ LS + Y + + Sbjct: 200 EFTIKYVSKLKAIADLQENLSVADQGKDTGILILSYLGDDPLKIKNIVDSISENYLAQNI 259 Query: 175 SFTAPTSEEAQTVLSG---YIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKN 231 S A E++ L+ + + + + + E + + + N Sbjct: 260 SRQAAQDEKSLEFLNKQLPMVRSDLDSAEDKLNDFRKRNDSVDLSLEAKSVLDQIVNVDN 319 Query: 232 QLDANIQRLNYSLDI-ANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTD 290 QL+ R + + K + + ++D+ A E + EI + D Sbjct: 320 QLNELTFRESEISQLYTKEHPTYKALMEKRKTLQDERGKLNKRVATMPETQQEILRLSRD 379 Query: 291 VAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGG 350 V ++L A + + S K P K I+V+ IG Sbjct: 380 VESGRAVYMQLLNRQQELNIAKSSA--IGNVRIIDSAVTQHKPVKPKKIIVVLAGLFIGL 437 Query: 351 MVACGGVLLRYAMASRKQDAMMADHL 376 +++ VL+R + + + L Sbjct: 438 VISVSLVLVRILLRKGIETPEQLEEL 463 Score = 55.4 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 31/310 (10%), Positives = 88/310 (28%), Gaps = 14/310 (4%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 M+S++ K+ + +++D ++ L +K ++A+ LL +F Sbjct: 1 MTSISKKKQPETV-----------DDLDFGRMVGELIDHRKIIIALTSFATLIALLYAFF 49 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 + + A++ + L L + + I L + Sbjct: 50 ATPIYKADALIQVEQKQANAILSNLSQMLPDSQPQSAPEIALIQSRMILGKTVDDLNLQA 109 Query: 121 LRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPT 180 + S Y + + I V + +++ P S Sbjct: 110 VVSPKYFPIFGRGWARLSGEHQGNI---QLSRLYVSSSIGDEENPPEFTLKVKDSNRYVI 166 Query: 181 SEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRL 240 + + + I + ++ + K + + + + L Q Sbjct: 167 EFGGEEINGKVGELIEKDGITLKIDEINAKPGAEFTIKYVSKLKAIADLQENLSVADQGK 226 Query: 241 NYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRN 300 + + I + G N + + ++ + + +E + + +L + Sbjct: 227 DTGILILSYLGDDPLKIKNIVDSISENYLAQNISRQAAQDEKSLEFLNKQLPMVRSDLDS 286 Query: 301 RQYLVEQLTK 310 + + K Sbjct: 287 AEDKLNDFRK 296 >UniRef50_C4ZJE1 Capsular exopolysaccharide family n=1 Tax=Thauera sp. MZ1T RepID=C4ZJE1_THASP Length = 730 Score = 71.2 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 38/310 (12%), Positives = 92/310 (29%), Gaps = 12/310 (3%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEP-- 76 + ++ I+L +I+VL K ++AV F G +++F+ + + +V + Sbjct: 1 MRDDRDDFINLGEIIAVLLEYKWLILAVTFFAVFIGAVVAFVSTPIYRADGLVQVQDSKG 60 Query: 77 --VQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEA 134 L L + + + + I L + + Y + Sbjct: 61 PKGGLAALRDVEAVL-GENSSVTAELEILRSRMILGRVVERLRLDIRATPDYFPIFGRAL 119 Query: 135 KIDELDLHRA--IVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYI 192 A ++ L + + + PS L+ A T+ Sbjct: 120 ARRYNGDQPAAPLLGLGSYAWGGERITVQTLEVPSYLVGLPLTLIAGD-NGGFTLYDDQD 178 Query: 193 DYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDI---ANA 249 + V + + K + + + I L L++ A Sbjct: 179 QPLLDGSVGQPASSADGKTTLFVAELVARPGTHFDLARISQIQAIAALREDLEVRERARQ 238 Query: 250 AGIKKPVYSNGQAVKDDPDFSISL-GADGIERKLEIEKAVTDVAELNGELRNRQYLVEQL 308 + + + YS+ + + + L + +A +A L +L + ++ Sbjct: 239 SNVIEAAYSDADRAEAERLLNEVLNAYVRQNVEYRSAEADATLAFLEKQLPELKAQLDTA 298 Query: 309 TKAHVNDVNF 318 A+ + Sbjct: 299 EAAYNDYRQT 308 Score = 43.9 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 23/280 (8%), Positives = 69/280 (24%), Gaps = 10/280 (3%) Query: 70 VVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEA-FNLFIKKFQSVS---LLEEYLRSSP 125 + + + + L + + LF+ + + + Sbjct: 162 TLIAGDNGGFTLYDDQDQPLLDGSVGQPASSADGKTTLFVAELVARPGTHFDLARISQIQ 221 Query: 126 YVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQ 185 + ++ ++ E ++ + + + + Y + + + ++ Sbjct: 222 AIAALREDLEVRERARQSNVIEAAYSDADRAEAERLLNEVLNAYVRQNVEYRSAEADATL 281 Query: 186 TVLSGYIDYISTL--VVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYS 243 L + + + + + R + + I + +Q+ Sbjct: 282 AFLEKQLPELKAQLDTAEAAYNDYRQTRGSVDLTLETQSVLSSIVKVDADVVELQQKRDE 341 Query: 244 LDI--ANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNR 301 L K + S ++ + + + DV N Sbjct: 342 LRQRFTPEHPQVKAIDSQLGRLRAVRGTLDKDVNRLPDTQQTALRLRRDVEVATALYTNL 401 Query: 302 QYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAII 341 +QL A V + + P KA+I Sbjct: 402 LNSAQQLRVARAGTVGD--VRVIDPAATAPLPVAPRKALI 439 >UniRef50_UPI00016A48EE exopolysaccharide transport protein family n=1 Tax=Burkholderia ubonensis Bu RepID=UPI00016A48EE Length = 744 Score = 71.2 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 37/308 (12%), Positives = 90/308 (29%), Gaps = 20/308 (6%) Query: 68 AAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYV 127 A P + L + D+ I+ + ++E + S + Sbjct: 196 TAETFPASAGPIKLLVRGINGTAGAGFDLVRGSRM---DTIEDLRKQLRIQELGKQSGVI 252 Query: 128 MDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTV 187 L+ D + L + + ++ + + + E S L F A + + Sbjct: 253 SATLRS--DDPVQLSAILNEIGDQYVRQNVDRKAAQAENS------LQFLASQEPKMKRD 304 Query: 188 LSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIA 247 L + ++ + ++ E + L ++ + Sbjct: 305 LEQAENRLNDYRNTHKVLDLT---EEGKSILAQSLDAEQQHFTLTQKRQELLTRFGPMHP 361 Query: 248 NAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQ 307 I + + + + D + + + + DV + +EQ Sbjct: 362 GVVAIDEQIAGTLGYIGELTDQIKRMPT----AQRDAIRLQRDVQVNTDLYLALRNNIEQ 417 Query: 308 LTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRK 367 L + + SLP + P K I+V+++ L+G V G +R + + Sbjct: 418 LRLLKAG--KVGSVRLVDAASLPERAVFPKKTIVVVVATLLGLFVGAGAAFVRDQLFTGI 475 Query: 368 QDAMMADH 375 + + Sbjct: 476 TNVRSLEA 483 Score = 56.6 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 31/294 (10%), Positives = 79/294 (26%), Gaps = 9/294 (3%) Query: 26 EIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKS 85 E+DL +++ +L + + A+ F L + ++ + S +V + + Sbjct: 17 ELDLASVLDILLDNRLLIAAIATVFTFISGLYALLVTPIYESNILVQIEDSPDASAAKDL 76 Query: 86 FTKLRVLDLDIKIDRTEAFNLFIKKFQSV--SLLEEYLRSSPYVMDQLKEAKIDELD--L 141 L + E L + S L+ ++ + P+ + D Sbjct: 77 LGTLSTMFDVKSTADAEIQILGSRLVVSRAVDKLKLFIHARPHRFPVIGGWLARRRDGLS 136 Query: 142 HRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLV-V 200 + + + D P A + G+ + V Sbjct: 137 VPGLFGVGGYTWGRESIDVATFDVPKQLEGKPYKLVALAGGRYELSGPGFDQPVKGRVGT 196 Query: 201 KESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYS-- 258 E+ +++ + + I+ L L I + + Sbjct: 197 AETFPASAGPIKLLVRGINGTAGAGFDLVRGSRMDTIEDLRKQLRIQELGKQSGVISATL 256 Query: 259 NGQAVKDDPDFSISLGADGIERKLE--IEKAVTDVAELNGELRNRQYLVEQLTK 310 +G + + ++ +A + L + + +EQ Sbjct: 257 RSDDPVQLSAILNEIGDQYVRQNVDRKAAQAENSLQFLASQEPKMKRDLEQAEN 310 >UniRef50_B5WI70 Capsular exopolysaccharide family n=1 Tax=Burkholderia sp. H160 RepID=B5WI70_9BURK Length = 730 Score = 70.8 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 67/219 (30%), Gaps = 13/219 (5%) Query: 153 KAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLE 212 + V+ N ++K+ + + E Y + + E R L+ Sbjct: 273 EYVNQNNARKESDAERSLALFDKQLPRLRAEVDDAEQRYNAFREAHGAVDLGEESRLLLQ 332 Query: 213 IKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSIS 272 E + + + + A A ++ + + V P Sbjct: 333 QMVDLETKITDLKQQSSDLAQRFAPGHPAVASVDAQIADLQHRRDALSRQVAGLPALE-- 390 Query: 273 LGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVK 332 + L +++ V L L NR + A +V + P + Sbjct: 391 ------QTVLRLQREVRVNTGLYTNLLNRAQELRVAKAAEAGNV-----RVVDYALPPDR 439 Query: 333 KDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAM 371 P +++ LS+++G ++ R+A++ + + Sbjct: 440 PAKPKVPLVLALSSVLGLLIGTTWAFARHAVSRGTESSE 478 Score = 48.1 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 33/293 (11%), Positives = 78/293 (26%), Gaps = 8/293 (2%) Query: 26 EIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPV-QWQELEK 84 ++ L + SVL + +M V A G L + + P + + A++ Sbjct: 17 QLRLSDYTSVLKVHWRFIMCVALAVFSLGALYALLAPPTYRADALIQVDNQNPNTDPAFS 76 Query: 85 SFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY---LRSSPYVMDQLKEAKIDELDL 141 + + + + L + R P + + D Sbjct: 77 QLAAIFNVRTTSDTEMELLGARLVIGETVRKLHLDIEAKPRRFPLLGGWIARFADDGQPG 136 Query: 142 HRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVK 201 + S+ S Y + + T G + + Sbjct: 137 TSLPGLRRFAWGGERIDVSRFDIPSSFYNKRFIVTAMRDGRFSLTDPHGTLVANGVVGTV 196 Query: 202 ESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIA---NAAGIKKPVYS 258 + + + + + T++ I L L +A +G+ + Sbjct: 197 VTGTTAQGPVTVLIDRLVAGPHTEFTLTRSPFLETITDLQNKLTVAEHVKQSGVIGIAFE 256 Query: 259 NGQAVK-DDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTK 310 + K D +I+ + A +A + +L + V+ + Sbjct: 257 GSERQKVTDTVNTIAREYVNQNNARKESDAERSLALFDKQLPRLRAEVDDAEQ 309 >UniRef50_Q84GX2 Orf41 n=3 Tax=Photorhabdus RepID=Q84GX2_PHOLU Length = 715 Score = 70.8 bits (171), Expect = 9e-11, Method: Composition-based stats. Identities = 35/302 (11%), Positives = 89/302 (29%), Gaps = 23/302 (7%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQEL 82 ++EIDL L+S L+ + + + F GL S I + + +++ + + L Sbjct: 13 DSDEIDLGRLLSALFDYRWVIGGITLLFTVIGLCYSLIATPIYKANSLLQVEKRSRVLPL 72 Query: 83 EKSFTK-LRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDL 141 L D + + I L + ++ Y K Sbjct: 73 IGDMADMLSGRPSDTSAELELLTSRMILGKTVKDLNLDVQVTADYFPVIGKGIARLRGMP 132 Query: 142 HRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVK 201 IV + + + K ++ L F ++ ++ + Sbjct: 133 KPDIV-IKHFAVSPEYMNKGIKIYVDDSENYRLLFDDQV----------FLGQVNKVFDT 181 Query: 202 ESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVY--SN 259 + + + + + + K I+ L +L + + Sbjct: 182 DGINLLISNISASPGQSFTLV-------KRGQLGVIRGLQQALRVKEKGNSTGIISLEME 234 Query: 260 GQAVKDDPDFSISLGADGIERKL--EIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVN 317 G S+G + +++ + ++E+A + + L L + + + + Sbjct: 235 GDDRARIKSILDSIGKNYLQQNVTRKMEEAESSLNFLKNHLPKVKIELNRSEELLNQYRQ 294 Query: 318 FT 319 Sbjct: 295 AN 296 Score = 69.3 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 49/330 (14%), Positives = 109/330 (33%), Gaps = 21/330 (6%) Query: 59 FILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLE 118 F + ++ + + + + F L K+ T+ NL I + Sbjct: 141 FAVSPEYMNKGIKIYVDDSE--NYRLLFDDQVFLGQVNKVFDTDGINLLISNISASPGQS 198 Query: 119 EYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTA 178 L + + + + DD A K S+ ++ Sbjct: 199 FTLVKRGQLGVIRGLQQALRVKEKGNSTGIISLEMEGDDRARIKSILDSIGKNYLQQNVT 258 Query: 179 PTSEEAQTVLSGYIDYIST------------LVVKESLENVRNKLEIKTQFEKEKLAQDR 226 EEA++ L+ +++ +++ E++ LE K+ E + + Sbjct: 259 RKMEEAESSLNFLKNHLPKVKIELNRSEELLNQYRQANESIDLSLEAKSALETLVQIEKQ 318 Query: 227 IKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEK 286 I +A +Q+L A A + K K + + SI + L + + Sbjct: 319 INELTFKEAELQQLYTKQHPAYVALLDK--RKTLVDTKKELNQSIKRLPKTQQEILRLTR 376 Query: 287 AVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSA 346 V E+ +L N+Q + L V +V + + P K++I++ Sbjct: 377 DVQVGQEIYVQLLNKQQELNILKAGTVGNV-----RIIDEAIVENSAVKPKKSLIIVSMM 431 Query: 347 LIGGMVACGGVLLRYAMASRKQDAMMADHL 376 ++G +++ G V +R + + + Sbjct: 432 VLGFILSAGLVCIRVMFRKGIESPEQLEEI 461 >UniRef50_A3W156 Putative succinoglycan biosynthesis transport protein ExoP n=1 Tax=Roseovarius sp. 217 RepID=A3W156_9RHOB Length = 632 Score = 70.4 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 46/355 (12%), Positives = 102/355 (28%), Gaps = 34/355 (9%) Query: 13 HFPDYPLASPSNNEID-LLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVV 71 PD SP+ + L +L++ R + +M GL+ P + SAA V Sbjct: 15 FRPDTLNRSPAQDRTTTLGDLLAAARRQRWPLMLCTALGLGLGLVKHMTTPPLYYSAATV 74 Query: 72 TPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQL 131 + E + T + + ++ I+ +S+ L EE R + Sbjct: 75 LVDVRMDESGGEITPTTPFLRNDTSLLNE-------IQVLRSLRLAEEVARRLSLHETPI 127 Query: 132 KEAKIDELDLHRA--IVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLS 189 + L ++ + + D S ++ + + + Sbjct: 128 FLNPPESLARSMLSAVLDAVKNVIGADPETPPPLPGSSEASAIKRAALILQRDVGIDRIG 187 Query: 190 GYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANA 249 + + E + L T + R+ Sbjct: 188 QSFTIDISYIGPEPALAAAIVNTYAESYLAAHLNAKMEVTARMAEWMQARIGE------- 240 Query: 250 AGIKKPVYSNGQAVKDDPDFSISLGADGIERKL-EIEKAVTDVAELNGELRNRQYLVEQL 308 +I + A+ + + KA+ +A+ L Q + Sbjct: 241 --------------LQRESEAIQVRAEALRAQTPPDTKALKALAQRAANLETLQQTLSSR 286 Query: 309 TKAHVNDVNFTPF--KYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRY 361 + + ++ + ++P K D P V ++ ++G M+ +LR Sbjct: 287 YEMVTIEGSYPVTNGRILSEAAVPKKPDLPKLWQSVAIATILGFMIGFVIAILRE 341 >UniRef50_B3EME9 Capsular exopolysaccharide family n=3 Tax=Chlorobiaceae RepID=B3EME9_CHLPB Length = 803 Score = 70.4 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 46/378 (12%), Positives = 115/378 (30%), Gaps = 71/378 (18%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTP-PEPVQ 78 + EI++ L+ VLW+ + + AV +L F ++ S +VV + Sbjct: 6 PNQFEQEINIQELLQVLWQNRLIIGAVTGVVLVLVMLYHFSATPEYRSTSVVLIKSDKGG 65 Query: 79 WQELEKSFTKLRVLDLDIKID---RTEAFNLFIKKFQSVSLL--------EEYLRSSPYV 127 E+ F + +L I+ +++ + Y+ ++ Sbjct: 66 MSEMINPFESMTGFELQNDIELVKSFPLAEEVVRELYARKDRDSLQLFGERRYISPIGHL 125 Query: 128 MDQLKEAKIDELDLHRAI----------------VALSEKMKAVDDNASKKKDEPSLYTS 171 ++ ++ + I + + V ++ + L + Sbjct: 126 FSWMRFGTREKEEKEYDIRMREYATALQKRISVSNSRDTDILQVSVSSPFPDEAALLTNA 185 Query: 172 WTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKT-- 229 S+ E +++S + + E + ++ + +K+ + + Sbjct: 186 ICRSYMRKDIEWNADQAMSVKEFVSDQLASQQKEIGEVENQLSSYMKKQNIYELTGNAEK 245 Query: 230 ----------------------KNQLDANIQRL---NYSLDIANAAGIKKPVYSNGQAVK 264 KN+ D I +L +L A + + + +K Sbjct: 246 LLEKLVEAESRYNDAQAECNILKNRQDYLINKLSAEEKALSAKIAKNVDQQSRELKERIK 305 Query: 265 DDPDFSISLGADG----------------IERKLEIEKAVTDVAELNGELRNRQYLVEQL 308 + I++ + +++L+ + T EL + RQY + + Sbjct: 306 QEEKQLIAMAGEAGTQDAGYLAKKQQLDMFKQRLQELTSNTIAGELAFASKARQYQFDLI 365 Query: 309 TKAHVNDVNFTPFKYQLS 326 ++ DV KY Sbjct: 366 SEQLQTDVRLAELKYIAQ 383 >UniRef50_A3WGE3 WcbD n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WGE3_9SPHN Length = 387 Score = 70.4 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 54/364 (14%), Positives = 110/364 (30%), Gaps = 40/364 (10%) Query: 31 NLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLR 90 L++ L R + VVF A L I + S + P + Q + L Sbjct: 19 QLVATLKRWRWFAAFVVFPSLVATLYYGVIAANIYVSESRFVIKAPERSQSSGSALGNL- 77 Query: 91 VLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSE 150 L E + I +S L + + + S Sbjct: 78 -LQSTGFGTGAEQASEIIGYLRSRDALSDLSERVDVRAAFGSDEADFLSRFPLIYQSDSF 136 Query: 151 KMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVL-------SGYIDYISTLVVKES 203 + + + + LS +A T EEAQ + ++ ++ V ++ Sbjct: 137 EDLYEYYGSMVEAQPDTDTGLTVLSVSAYTPEEAQALNAGLLELGEELVNRLNERVNTQA 196 Query: 204 LENVRNKLEIKTQFEKE-KLAQDRIKTKNQLDANIQRLNYSLD-----IANAAGIKKPVY 257 ++ + ++ Q ++ ++ + +L Q+ L+ IA A ++ + Sbjct: 197 IDEAQLVVDEAQQRVRDARIKLGAYRNSAELLDPAQQGIGVLEVSNALIAQEAALRAQLA 256 Query: 258 SNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELN---------GELRNRQYLVEQ- 307 + + P + E+ V N L Q EQ Sbjct: 257 EIRRNAPNHPAIPALRDRIAGLSQQVAEQTGRAVGTPNGIAAKITEYENLLVEQEFAEQT 316 Query: 308 -------LTKAHVNDVNFTPF-KYQLSPSLPVKKDGPGK---AIIVILSA----LIGGMV 352 L +A + + + + P+ P P + + VI + L+G M+ Sbjct: 317 LTAANAALEQARIEAKQQQYYLERVVEPNKPDDAIMPARIRSILAVIFATLCLYLVGWML 376 Query: 353 ACGG 356 + G Sbjct: 377 SVGV 380 >UniRef50_Q3IV72 Predicted acetyltransferase n=4 Tax=Rhodobacter RepID=Q3IV72_RHOS4 Length = 733 Score = 70.1 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 36/316 (11%), Positives = 95/316 (30%), Gaps = 15/316 (4%) Query: 17 YPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEP 76 P+A+P +EIDL L+ +W K + + A GL + + ++ E Sbjct: 7 QPVAAPEEDEIDLGQLLGQIWHGKLWIGSATLAAGMLGLAWLANTAPTYRADTLLQLEEK 66 Query: 77 VQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKI 136 L + ++L + + + + + + + P + +A Sbjct: 67 ASPLALPTALSELAGGEARSATEVEILRSRLVLGEAVAAFHLD-WEAKPLRAPLVGQAVA 125 Query: 137 DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 196 + + L + + P + + TA + +L + Sbjct: 126 SGVLPLPEVEGLIRYDRGDSRIRLDLLEVPPEWVEEPILLTAMGEGQFALLLPDGREETG 185 Query: 197 TLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPV 256 + ++ + ++ + + + + I L L +A G + + Sbjct: 186 EVGRPLAVPD--RGFGLRIGALEGVRGRQFVIRQLDETGAIGALRDRLTVAE-RGKQSSI 242 Query: 257 YSNGQAVKDDPDFSISLG---ADGIERKL--EIEKAVTDVAELNGELRNRQYLVEQLTKA 311 G +D + +LG + + + +A + + + G+L Q Sbjct: 243 LEVGLTGRDPAEVQRTLGGIAEAYLRQNMTRSAAEAESSLEFIEGQLPEAQ------KAV 296 Query: 312 HVNDVNFTPFKYQLSP 327 + ++ Sbjct: 297 RAAEDRLNAYRQAQQA 312 Score = 42.3 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 31/324 (9%), Positives = 84/324 (25%), Gaps = 10/324 (3%) Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTE----AFNLFIKKFQSVSL 116 +P +W ++ L + ++ + + ++ + Sbjct: 154 VPPEWVEEPILLTAMGEGQFALLLPDGREETGEVGRPLAVPDRGFGLRIGALEGVRGRQF 213 Query: 117 LEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 176 + L + + + E +I+ + + + Y ++ Sbjct: 214 VIRQLDETGAIGALRDRLTVAERGKQSSILEVGLTGRDPAEVQRTLGGIAEAYLRQNMTR 273 Query: 177 TAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDAN 236 +A +E + + G + V + + + + Sbjct: 274 SAAEAESSLEFIEGQLPEAQKAVRAAEDRLNAYRQAQQAIDLGFEGQSLLTQISAIETEL 333 Query: 237 IQRLNYSLDIANAAGIKKPVYS----NGQAVKDDPDFSISLGADGIERKLEIEKAVTDVA 292 Q + +IAN P Y +++ ++ E + E+ D+ Sbjct: 334 RQLADQEEEIANRYTSNHPTYQRLLAMRGRLEERLAALRKEVSNLPETQREVFNFTRDLE 393 Query: 293 ELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMV 352 ++L + + P + + L+ L+G + Sbjct: 394 VAQEVYLQLLNRAQELRVVKA--STIGNVRIVDGARTAPEPVAPRRGRTLALALLLGALS 451 Query: 353 ACGGVLLRYAMASRKQDAMMADHL 376 G VL R + + D L Sbjct: 452 GTGLVLGRAWLRRSVRGPEELDRL 475 >UniRef50_A0NRN0 Lipopolysaccharide biosynthesis n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NRN0_9RHOB Length = 782 Score = 69.3 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 38/325 (11%), Positives = 101/325 (31%), Gaps = 4/325 (1%) Query: 46 VVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFN 105 A A I + Q + P PVQ L S + + D ++D Sbjct: 153 TAAVEALADATIVKRVGQTFVINISAESPSPVQAAVLANSIAESYLSDQKRQVDLASDEA 212 Query: 106 LFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDE 165 + V L + ++ + + K+ D + ++ Sbjct: 213 AAQIDDRLVDLRDRLRQAEEEIQKFRADNKLQNSDEGSLLTGQELTGLNSRLIDARAALA 272 Query: 166 PSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQD 225 + + + +A+++ + + ++ R + ++ + Sbjct: 273 EATAKYDEIQRVLKSGVDAESIADVVNSPTISSLRQQYATAARTEAQLMADLLPSHPSVA 332 Query: 226 RIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIE 285 + +++ + N+ R + IA++ I V + + S +D + Sbjct: 333 QSRSQLERLRNLIR-DEIKRIADSTRIDVQVNQERVSRLEQQLDSTRNLSDVDQAASIRL 391 Query: 286 KAVTDVAELNGELRNRQYLVEQLTKA-HVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVIL 344 + + A+ +L + + + ++ V + P P + I+VIL Sbjct: 392 RELETEAQATRQLYEI--ALSRAKEISQLDQVVLPNARIISPAIPPESPVYPKRKIMVIL 449 Query: 345 SALIGGMVACGGVLLRYAMASRKQD 369 + ++G + + A+ K+ Sbjct: 450 AGILGVLFGTMIAVGGEAIRIAKKH 474 Score = 47.7 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 44/326 (13%), Positives = 96/326 (29%), Gaps = 25/326 (7%) Query: 4 LNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQ 63 ++ +Q + + +D+L++ VL R + A+ F FA S + Sbjct: 1 MDPRQVENQAYDRTSAQGRDAIALDILSIFQVLRRRIFLIAAIAFVFAALTAAYSLTITP 60 Query: 64 KWTSAAVVTPPEP-----VQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLE 118 + +++ V +S V+D I + ++ + + ++S Sbjct: 61 IFRASSQVLFDPTVRQPFDDPNRPSRSGQGSEVIDSQISVIHSDTVLRPVARENNLSEDP 120 Query: 119 EYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTA 178 + P +M Q K + A + E + +S + Sbjct: 121 HFGEGKPGLMSQFKSLIFGDTKKDAATLEAQETAAVEALADATIVKRVGQTFVINISAES 180 Query: 179 PTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQ 238 P+ +A + + + E +K ++ + Q+D + Sbjct: 181 PSPVQAAVLAN-------------------SIAESYLSDQKRQVDLASDEAAAQIDDRLV 221 Query: 239 RLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGEL 298 L L A I+K N D+ G+ +L +A A + Sbjct: 222 DLRDRLRQAEE-EIQKFRADNKLQNSDEGSLLTGQELTGLNSRLIDARAALAEATAKYDE 280 Query: 299 RNRQYLVEQLTKAHVNDVNFTPFKYQ 324 R ++ + VN Sbjct: 281 IQRVLKSGVDAESIADVVNSPTISSL 306 >UniRef50_Q1ITG0 Protein-tyrosine kinase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ITG0_ACIBL Length = 743 Score = 69.3 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 42/482 (8%), Positives = 111/482 (23%), Gaps = 108/482 (22%) Query: 1 MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFI 60 M + + + E DLL+++ VL R + ++ V +L Sbjct: 1 MEKFSQIENVQGASRTSWADVQEDREADLLHVLYVLRRHLQMIIGVTAFGVLVAILFCLF 60 Query: 61 LPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY 120 + ++ A + + L + + +S +L + Sbjct: 61 MKPRYEGMADLNVHPEESAALDMGALGDLATGAGGLDWSSK--LETQARILKSDTLAWDV 118 Query: 121 LRSSPYVMDQLKEAK-----------------IDELDLHRAIVALSEKMKAVDDNASKKK 163 + ++ K +DE + + S+ ++ ++ Sbjct: 119 ISQLRLDQNEAFATKSLFGRSLQTPVGKDVSSVDEARKSKLLTRFSKALRVEAVPKTQVI 178 Query: 164 D-----------------------------------EPSLYTSWTLSFTAPTSEEAQTVL 188 + + S + L+ EE+Q L Sbjct: 179 EIRFRSTDPALAAKVVNTLTSSYMHHNFMTRFEATMQASAWLQQRLTELKNNVEESQRKL 238 Query: 189 SGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIAN 248 + Y + + E+ + L ++ + + +K A I Sbjct: 239 AEYQSKANIIGTDETDNLAVSDLTDVSKQLTDAESDRIMKEAKYRLAQTGNPELIGTILP 298 Query: 249 AAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLV-EQ 307 + + +S G++ + + A L E+R+ + + Sbjct: 299 DSVLPVLRSQEADLRNQLAQYSTKFGSNYPKVIQLNNQLAQTDASLKKEIRDIEERFRTE 358 Query: 308 LTKAHVNDVNFTP----------------------------------------------- 320 A + Sbjct: 359 YESAKRTEDQLRASVENRKKEAFSQSAKFSQYDILKNEVASGRSLYEDLLRKLNEAGIAA 418 Query: 321 ------FKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMAD 374 ++P P + + L G + ++ ++ A+ Sbjct: 419 GLKSTNVDVIDPSAVPQLPVLPNVPLFIALGLFGGAFLGVCSAFVKESIDQTISSPEDAE 478 Query: 375 HL 376 + Sbjct: 479 EM 480 >UniRef50_Q15NN8 Protein-tyrosine kinase n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15NN8_PSEA6 Length = 708 Score = 69.3 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 33/296 (11%), Positives = 95/296 (32%), Gaps = 21/296 (7%) Query: 22 PSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQE 81 +D+ ++++ LWR K ++ A G LP+ + +++++ Sbjct: 10 KQERSLDIFDILTFLWRKKFRIIITAGLLASLGAYYVIHLPKIYVASSILLLSAKDSGLT 69 Query: 82 LEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDL 141 L S + + + + + +I+ +S ++ + + D + Sbjct: 70 LPSSLSAITSGEDTRQ-------DTYIEFMRSRQFVQTVVDDLALYNLHEYQQSTDGGYV 122 Query: 142 HRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLS-------GYIDY 194 A ++ +K + S ++ + T A + + Y Sbjct: 123 SEKDYATTKLLKQFSVSKL------SNTDMLKITVESLTPSSAAEIANHIGPAFFAYYAL 176 Query: 195 ISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKK 254 I+ + + ++L + + ++ +++ L + AG+ Sbjct: 177 INRQKADSKSQWLNDQLNELKTSLSQSEERLLTFLRDNELVDVES-QVDLAKSEIAGLIS 235 Query: 255 PVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTK 310 +AV + + L ++ ++ L +LR R+ + L + Sbjct: 236 QKIHIDRAVAESQGSMVQLATISGGQQDYLQIPAIQNNALIRDLRIRRGQQQLLME 291 >UniRef50_B8F354 Tyrosine kinase, chain length regulator in capsular polysaccharide biosynthesis n=4 Tax=Pasteurellaceae RepID=B8F354_HAEPS Length = 695 Score = 68.9 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 27/284 (9%), Positives = 82/284 (28%), Gaps = 7/284 (2%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ 78 + +++EIDL+ L+ L K + + + P +T+ A + Sbjct: 1 MNENNHDEIDLVKLLGALLDYKWWIALFTLLVTLFSVAYVLLAPPVYTANASIQVESKSS 60 Query: 79 WQELEKSFTKLRVLDLDI----KIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEA 134 L L + + +++ +++E + Sbjct: 61 RGLLNDFPGVLEGESSSSTEIAILKSRMVLSNTVEQLNLTTVVEPQFSIPFLSKGLHRLM 120 Query: 135 KIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDY 194 + + +MK + + E SL+ + ++ QT + Sbjct: 121 GYEPQLSLSLFEPKNPQMKEMILEVGENAGEFSLFFADEKVLEGSIGKKYQTEDFSFAIS 180 Query: 195 ISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKN---QLDANIQRLNYSLDIANAAG 251 + + +N + + +++++ + ++ N + I + Sbjct: 181 ELEAKPGQLFKIKKNDVLLAINSLQKQISVTESGKQTGIIEISINGENKAQIKKIVKSVS 240 Query: 252 IKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELN 295 + + + + L E K + ++ ++ E Sbjct: 241 ENYLLQNIVRDSAEASKSLEFLSKQLPELKARLAESENNLNEFR 284 Score = 51.2 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 24/254 (9%), Positives = 71/254 (27%), Gaps = 6/254 (2%) Query: 127 VMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQT 186 + K+ + E I+ +S + K Y + + + ++ Sbjct: 201 INSLQKQISVTESGKQTGIIEISINGENKAQIKKIVKSVSENYLLQNIVRDSAEASKSLE 260 Query: 187 VLSGYIDYISTLVVKESLE----NVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNY 242 LS + + + + ++N+ + K L + + ++ Sbjct: 261 FLSKQLPELKARLAESENNLNEFRLKNESVDLSLEAKSALDTIVQLEADLNELTLKESEI 320 Query: 243 SLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQ 302 S + + + ++ + E+ + D+ Sbjct: 321 SQKFTRNHPAYVALIDKRKVLNEEKIRLNKQVERLPNTQKEVIRLTRDLEVNQQIYIQLL 380 Query: 303 YLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYA 362 +++L + V + + P K I+V + ++G + A + + Sbjct: 381 NKMQELEIVKASTV--GNVRILDEAQVLPNAVSPRKMIVVASAFMLGLIFASVTAIAKTL 438 Query: 363 MASRKQDAMMADHL 376 + + D L Sbjct: 439 LHRGIEGTSELDVL 452 >UniRef50_A4JQJ9 Lipopolysaccharide biosynthesis n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JQJ9_BURVG Length = 743 Score = 68.9 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 34/285 (11%), Positives = 87/285 (30%), Gaps = 9/285 (3%) Query: 100 RTEAFNLFIKKFQSVS---LLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVD 156 + + L + + + + V + ++E I++++ + Sbjct: 210 QGKPLTLLVAALDARPGTTFRLKRIPQIEAVAQLQDDLSVEEKAKQSGILSVTLEGDDKV 269 Query: 157 DNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQ 216 K Y + + + + L + + + + + +T Sbjct: 270 RIREILKAVVDGYVAQNRDYRSKEAAATLESLKISMPAVEQTLKDAEERYAKFRARTRTV 329 Query: 217 FEKEK----LAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSIS 272 E+ L Q+ L+ +R++ A+ + + +N + + Sbjct: 330 DLDEQGKLLLGQEVDIDTRMLELKQRRVDLIARFADGHPAVQALDANLAELAGKAAELRT 389 Query: 273 LGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVK 332 A + + E + DV N +QL A + P LPVK Sbjct: 390 REARLPDTEREGLAVLRDVRVNTELYTNLLNTAQQLNIAK--QSEIGNVRAVDQPVLPVK 447 Query: 333 KDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADHLV 377 P + +++ LS +G + + A+ R + + + + Sbjct: 448 PVKPKRLLVIALSLCVGIALGVAAPFAQRAVWGRVEHSEHLEQAL 492 >UniRef50_B0UKX0 Lipopolysaccharide biosynthesis protein n=1 Tax=Methylobacterium sp. 4-46 RepID=B0UKX0_METS4 Length = 576 Score = 68.5 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 44/342 (12%), Positives = 102/342 (29%), Gaps = 27/342 (7%) Query: 27 IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSF 86 ++L ++SVL R + + V + + FI +T+ A + + + Sbjct: 20 VNLREILSVLKRRRAIFLVVTSIVLFSVIAYLFIARPTFTATAQILLDQQQRI------- 72 Query: 87 TKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIV 146 + + ++ S ++ + S E ++ Sbjct: 73 ADDVPREQLPSETVSAIVESQVQTVASHEIVRRLIAS-------EHLTSDPEFASRGLVL 125 Query: 147 ALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLEN 206 + + A+ ++ +P + + A+ + ++ IS Sbjct: 126 QILHSALGMIGTAAYEEGDPEA----RVHQNVRNAISARRLDKTFVLEISFESHDRQKSA 181 Query: 207 VRNKLEIKTQFEKEKLAQDRI--KTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVK 264 + + A+ + +A + L L A A I+ + + V Sbjct: 182 RLANATARAFIADQVEAKVAANRRLAASYEARLPELRGELQRAEQA-IETYKFQHSTVVP 240 Query: 265 DDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQ 324 + G + + E+E+ L R + +V D F Sbjct: 241 SGG-PATLGGNEALVGLRELEREAETSRALYVSQLARSRKAFEQANFYVADARF-----I 294 Query: 325 LSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASR 366 P ++ P ++++ G VA G LLR + +R Sbjct: 295 SPAIPPARRSWPPTGVLLVAGLFGGMSVAAGVALLRDHLDTR 336 >UniRef50_B1FTG2 Exopolysaccharide transport protein family n=4 Tax=Burkholderia RepID=B1FTG2_9BURK Length = 750 Score = 68.5 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 33/307 (10%), Positives = 87/307 (28%), Gaps = 14/307 (4%) Query: 78 QWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKID 137 ++L+ + + L ++ + E L + + Sbjct: 181 DQKQLDAPIYGRVGETIVSNESTGKI-TLRVQALNANPGTEFVLVRNARLKTLENLQDKL 239 Query: 138 ELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 197 + + D K ++ + + A + EA+ L ++ + Sbjct: 240 FIVEKGKQSGIIGASLTGTDRQLTAKILNNIGDEYVAANIARKAAEAEKSL-AFLSDLLP 298 Query: 198 LVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIAN--------- 248 + E E+ RN ++ + ++ + KT + +Q +L Sbjct: 299 QLKSELEESERNYNALRIKRGTFDIS-EEGKTYLRESVELQASALALKQKRSELTALFTS 357 Query: 249 AAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQL 308 + V ++ E + E + + DV N ++QL Sbjct: 358 EHPSVRAVDQQLASLSAKEAAVSQRMTSLPELEQESLRLMRDVRVNNDLYVGMLNNMQQL 417 Query: 309 TKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQ 368 + +P + P K +++ SA++G + +R+ + Sbjct: 418 KLVRAG--KVGTVRLLDRSLVPKEPIKPNKPLLIAASAVLGLFLGIAATFMRHILRGGVT 475 Query: 369 DAMMADH 375 + + Sbjct: 476 NPQDIEQ 482 Score = 68.1 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 37/308 (12%), Positives = 98/308 (31%), Gaps = 10/308 (3%) Query: 11 DAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAV 70 + P A N+++L+ + V+ + V+A+ G+ SF+ P + S + Sbjct: 2 NEFSPKSQAAGSGQNDVNLVRYVDVVLANRWLVLAITSMVLAIGVAYSFLAPPVYQSDIL 61 Query: 71 VTPPEPV--QWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVM 128 + + + L + L + + + + +V L Y+ + P Sbjct: 62 LQVEQESPTNTKSLLGDVSSLFDVKTETTAQIEVLRSRMVVG-NAVDNLRLYISAEPKRF 120 Query: 129 DQL--KEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQT 186 + A+ ++ ++ + + D P T+ + Sbjct: 121 PLIGNWIARWNKSLSQPGLLGVGGFAWGNESIDVGTFDVPEDLEGDDFKLTSLGGDRYVV 180 Query: 187 VLSGYIDYISTLVVKESL-ENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLD 245 I V + + K+ ++ Q + + +N ++ L L Sbjct: 181 DQKQLDAPIYGRVGETIVSNESTGKITLRVQALNANPGTEFVLVRNARLKTLENLQDKLF 240 Query: 246 IANAAGIKKPVYSN--GQAVKDDPDFSISLGADGIERKL--EIEKAVTDVAELNGELRNR 301 I + ++ G + ++G + + + + +A +A L+ L Sbjct: 241 IVEKGKQSGIIGASLTGTDRQLTAKILNNIGDEYVAANIARKAAEAEKSLAFLSDLLPQL 300 Query: 302 QYLVEQLT 309 + +E+ Sbjct: 301 KSELEESE 308 >UniRef50_A3VRW3 Polysaccharide chain length determinant protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VRW3_9PROT Length = 509 Score = 68.5 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 40/316 (12%), Positives = 108/316 (34%), Gaps = 53/316 (16%) Query: 29 LLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTK 88 ++ ++ LWR + + + + A G +LP + S A V Sbjct: 14 IITIVIGLWRRRWLIAGIAWLAALLGWSAVALLPDLYESRAQVYINTDTAL--------D 65 Query: 89 LRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVAL 148 + D+ ++ +R + + + S LE+ + L +DL R + +L Sbjct: 66 ATISDVAVRPNREKGVQVIRTQLLSSDNLEKVI-----YATGLDAEVEGPVDLQRKVASL 120 Query: 149 SEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESL---- 204 +E ++ E + +T + + AQ V++ +D + + Sbjct: 121 AEAIRI----------EQTQENYFTFKYADKDPQTAQRVVATLVDLFIEQNLSNATTDVG 170 Query: 205 ---ENVRNKLEIKTQFEKEK----------------LAQDRIKTKNQLDANIQRLNYSLD 245 +N+ +L +K K + +++ ++ + + R++ L Sbjct: 171 RAVQNLDRELALKESELKALDDEIAVFKSVNADILAAEERKVRRRDSREGELARVSDLLS 230 Query: 246 IANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLV 305 +A A A+++ P ++ D ++ +L ++ + ++ + + Sbjct: 231 LARARE-----SRLATALRETPRYAPGDDLDALKLRLATLQSQ--FTDNYPDIVRLKAQI 283 Query: 306 EQLTKAHVNDVNFTPF 321 +L + + Sbjct: 284 AELERNSSALPENPVY 299 >UniRef50_UPI000197B94A hypothetical protein BACCOPRO_01725 n=1 Tax=Bacteroides coprophilus DSM 18228 RepID=UPI000197B94A Length = 339 Score = 68.5 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 40/327 (12%), Positives = 92/327 (28%), Gaps = 18/327 (5%) Query: 26 EIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPP--EPVQWQELE 83 EIDL LI L +K ++ V G++I+ LP+ + ++P + L Sbjct: 9 EIDLTELIQKLQNNRKYILKAVGVGFIIGIIIAISLPKTYKVDITLSPESGQNGSSSNLA 68 Query: 84 KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYL---------RSSPYVMDQLKEA 134 + L + + +F +S + E + + + + ++ Sbjct: 69 GMASMLGIGGIGGTSQDAVNSTMFPDLIKSTPFILEMYNVQVTPLKSKRAILLSEYIETQ 128 Query: 135 KIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDY 194 K + + ++ KK DE + L+ + A + Sbjct: 129 KKPWWSYVLGLPGKTIGGIISLFSSEKKIDENKDIDPFRLTGEQNSKINAIKEALSASED 188 Query: 195 ISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKK 254 + + ++ T + + + + NY + + Sbjct: 189 KKSGMTI-VSATFQDPEVAATVADSAVAKLQKYIIDYRTRKAQEDCNYLEKLCKERKEEY 247 Query: 255 PVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVN 314 A D + ++ L + + + +A Q V + Sbjct: 248 YKAQKAYANFMDANRNVVLQRT--QAEGTRLQNDMSIAFQIYSQVETQLQVARAKVQEAK 305 Query: 315 DVNFTPFKYQLSPSLPVKKDGPGKAII 341 F ++P+ P K I Sbjct: 306 ----PVFAIVEPATVPLGPSSPNKKIN 328 >UniRef50_Q7U940 Putative uncharacterized protein n=1 Tax=Synechococcus sp. WH 8102 RepID=Q7U940_SYNPX Length = 561 Score = 68.5 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 43/324 (13%), Positives = 102/324 (31%), Gaps = 30/324 (9%) Query: 10 SDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWT-SA 68 + + N+EIDL + + L R + + A + +F W S Sbjct: 2 TSSPSQTLQPQQLDNDEIDLRQVAAALKRQWLLIGGITAATVLLSGIYAFTRKPVWEGSF 61 Query: 69 AVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVM 128 +V + V L K +L + E S+ + L S + Sbjct: 62 QIVLENQDVGGGRLAKLAAANPMLAGLAGVSAGE---------SSLVTEVKILESPSVLR 112 Query: 129 DQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVL 188 K + A ++ K V + ++ + + + LS T ++E ++ Sbjct: 113 PTYDFVKASKAA------AGADVSKWVITDWTRSLEIELVKGTSVLSLTYRDTDE--DLI 164 Query: 189 SGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIAN 248 ++ I+ + S ++ R L + ++++ + R ++ + R + +AN Sbjct: 165 LPVLERITRTYQEYSGKDRRRGLTQGVAYLEQEIDKLRQQSATSM-----RTAQAYALAN 219 Query: 249 AAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKA-----VTDVAELNGELRNRQY 303 GI+ + A S+ + + ++ + + Sbjct: 220 GLGIQDGM--PTGATGSTNGGSVEASREAAQNQVNALRQRIAAAQRSGNTTLYKAPQLAA 277 Query: 304 LVEQLTKAHVNDVNFTPFKYQLSP 327 E ++ + L+P Sbjct: 278 NTEIYSQLQRVETRLQQQSALLTP 301 >UniRef50_D2LDJ6 Lipopolysaccharide biosynthesis protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LDJ6_RHOVA Length = 396 Score = 68.1 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 42/365 (11%), Positives = 109/365 (29%), Gaps = 19/365 (5%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ 78 +A + EI+ +++ L+ + V+A +L+ + + + A V Q Sbjct: 5 VAQSDDREINFRKILAALFANVRLVLAAAGTGVVLAVLLILVSNPVYKATAKVLIDTRQQ 64 Query: 79 WQELEKSFTKLRVLDLDIKIDRTEAFN------LFIKKFQSVSLLEEYLRSSPYVMDQLK 132 + K + D + E + S E R + + Sbjct: 65 NILSSEELVKSAIFDTSAIDTQVELLTSGSVARRALADLSEKSAPGEMKRQTFTDKEIRA 124 Query: 133 EAKIDELDLH--RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSG 190 + ++ ++ + + A+ Y S +++A L G Sbjct: 125 FLANLSVARKGLTYVLDVTFAARNAAEAANAANVIVKAYIDEAASADMNAAQKANAWLQG 184 Query: 191 YIDYISTLVVK-----ESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLD 245 I + V++ + + V + + Q +E+ + I A + D Sbjct: 185 RIKTLEPEVIRLEKQIQDYKAVNGLVSLGEQTVEERNLVEYIGQLGLAKAALAEAQAKRD 244 Query: 246 IANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKL-----EIEKAVTDVAELNGELRN 300 + + + ++ + G + + ++ + + E Sbjct: 245 LDQSKSAMSLQSQDAYSIARTKVSLMERGLETLRAEVVNRREKELQLQEMNREATAAKEL 304 Query: 301 RQYLVEQLTKAHVNDVNFTPF-KYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLL 359 L+++ + + + + P P KA++++ A IG + V+ Sbjct: 305 YASLLKRQREIEAQESRSAAYARVVQEALPPAWPSWPPKALLLLAGAFIGFVAGTLLVVA 364 Query: 360 RYAMA 364 R Sbjct: 365 RLVAR 369 >UniRef50_Q0AAI3 Putative uncharacterized protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0AAI3_ALHEH Length = 721 Score = 67.8 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 29/303 (9%), Positives = 88/303 (29%), Gaps = 16/303 (5%) Query: 12 AHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVV 71 + + P +S ++EI++ L+ +L K + + G ++ ++ ++ Sbjct: 2 SQYEHRPTSSDRDDEIEIGRLVEILLNGKWIIAGLSALGLALGGFYAYTSTPVYSGDMLL 61 Query: 72 TPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQL 131 ++E L L + ++ + ++ +S ++ + + Sbjct: 62 ---------QVESKQATLPGLSEMLGGEQQVPTSAEVELLRSRMVVGSVVDQLDLAVQAR 112 Query: 132 KEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGY 191 ++ +S + ++ + T + Sbjct: 113 PLPTDWREA----VLGVSNPRRHIEVGRFEVSPALEGQTFIVRVLGEGQFALLEDDGGAE 168 Query: 192 IDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIAN--A 249 + + L++ + + IQ L L+++ Sbjct: 169 LARGRVDETLVLDNPDGSSLQLFVHVLTGEPGDTFELVRQPRLRAIQNLRNGLNVSQRGE 228 Query: 250 AGIKKPVYSNGQAVKDDPDFSIS-LGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQL 308 +GI + Y + + + + + E+A + L +L Q ++Q Sbjct: 229 SGILEVTYEHPDRQLIEEVLNTLGMVYVRQNVERRTEEAARSLEFLEEQLPQLQDRLQQA 288 Query: 309 TKA 311 A Sbjct: 289 EDA 291 >UniRef50_UPI0001C16095 Lipopolysaccharide biosynthesis n=2 Tax=Nostocaceae RepID=UPI0001C16095 Length = 746 Score = 67.4 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 32/313 (10%), Positives = 87/313 (27%), Gaps = 21/313 (6%) Query: 18 PLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPV 77 P+ + IDL +L R ++ V+ + A + ++ + + + + Sbjct: 19 PINKKETDVIDLQIYWLILKRRWLVILLVIASVLGAAISYTYSQKPVYQAKGKLLFEKKD 78 Query: 78 QWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKID 137 L T + L + E +RS P + + + I Sbjct: 79 GVSSLTSLATSVGELGGLGNNS------------NPIDTEAEVIRSHPLITKTINQLGIK 126 Query: 138 ELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 197 E ++ K LS+++ +EA ++ + Y Sbjct: 127 --------NTKGEPIEIDRFLKQLKLQTIRGTDVMELSYSSTNPQEAADTVNTLMKYYLD 178 Query: 198 LVVKESLENVRNKLEIKTQFE-KEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPV 256 + + + +Q + + + + + + I R+ A Sbjct: 179 NNILINRSEATAARKFLSQELPRIEKQVIKAELELRRFKEINRVVALDAEAKVGIETLGR 238 Query: 257 YSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDV 316 + + S + ++ +L++ ++ Q ++ + K Sbjct: 239 INEVITQAQGQLAAASTRSLALQNELQLTTQQAVALSNISQIPGVQQVLTEYQKTQQELA 298 Query: 317 NFTPFKYQLSPSL 329 +P + Sbjct: 299 IAETTYTSDNPKV 311 Score = 57.0 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 44/310 (14%), Positives = 99/310 (31%), Gaps = 17/310 (5%) Query: 83 EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLH 142 K E + + ++ L + + V+ EAK+ L Sbjct: 179 NNILINRSEATAARKFLSQELPRIEKQVIKAELELRRF-KEINRVVALDAEAKVGIETLG 237 Query: 143 RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTS----EEAQTVLSGYIDYISTL 198 R +++ + +++ + T A ++ Q VL+ Y L Sbjct: 238 RINEVITQAQGQLAAASTRSLALQNELQLTTQQAVALSNISQIPGVQQVLTEYQKTQQEL 297 Query: 199 VVKESL--------ENVRNKLEIKTQFEKEKLAQDRIKTKNQLD--ANIQRLNYSLDIAN 248 + E+ N++ K + + +E+++Q + I L L + Sbjct: 298 AIAETTYTSDNPKVVNLQLKEQALKKQLQERVSQTLGNAEVLQQSNLQIGELKQGLTQ-D 356 Query: 249 AAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQL 308 + + VK I ++ + +L Q L++QL Sbjct: 357 LVRSEVERLALANQVKALQSVFIINKRRLDSLPRLEQQQLQLQRQLQVAQGTYQQLLKQL 416 Query: 309 TKAHV-NDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRK 367 + V + N + S +P P A+ + + AL+G ++ G LL + Sbjct: 417 QEVQVLENQNVGNARVISSALVPEIPISPRTALNIGIGALVGVVLGVGTALLLETLDKSV 476 Query: 368 QDAMMADHLV 377 ++ + ++ Sbjct: 477 KNIEELNRIL 486 >UniRef50_Q13ZQ0 Protein-tyrosine kinase n=1 Tax=Burkholderia xenovorans LB400 RepID=Q13ZQ0_BURXL Length = 802 Score = 67.4 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 42/333 (12%), Positives = 94/333 (28%), Gaps = 23/333 (6%) Query: 58 SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLL 117 S +P+ A + EL +F + + + + LF+K + Sbjct: 160 SITVPKSLEGARLTLRALDRGRYELSDAFGQQILTGVAGQEAEGSGVTLFVKTLVARPGT 219 Query: 118 EEYLR---SSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL 174 E Y+ V ++ E +V LS Y Sbjct: 220 EFYVTRYNQLDAVNGLAAGLQVTEKGRDTGVVQLSYTGTDPHAITDIANAVAQSYLKQRT 279 Query: 175 SFTAPTSEEAQTVLSGYIDYISTLVV--KESLENVRNKLEIKTQFEKEK----------L 222 + T L+G + + V + +L ++K+ + ++ Sbjct: 280 ERAQEEASRMLTFLNGELPRLREEVKRTETALSEYQSKVGSFSFQPTQEAGVYLAGGLDY 339 Query: 223 AQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKL 282 + + Q +QR + + + + + K D SL + + Sbjct: 340 DKQLGTLRIQRAQLLQRFTEASQEVQQ--VDAQIAAMTREKKRFEDHFASLPSSERNA-I 396 Query: 283 EIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIV 342 +++ E+ L N+ + + +V LP + P A+I+ Sbjct: 397 ALQRDAKVAEEIYVTLLNKTQELSISRAGTIGNV-----HIIDEALLPSQPVRPKSALII 451 Query: 343 ILSALIGGMVACGGVLLRYAMASRKQDAMMADH 375 ++G + R + D + Sbjct: 452 SAGTVLGVIGGILFAFCRRTFFTGVSDPEFVER 484 Score = 58.5 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 39/317 (12%), Positives = 93/317 (29%), Gaps = 15/317 (4%) Query: 18 PLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTP---- 73 P S + + L +L+ ++ V+ + + A +L + I +++ A++ Sbjct: 11 PAPSSDEDAV-LRDLLRMVMDQIWWVIGIAASVILAAVLYTKIATPIYSADALLQVDAQS 69 Query: 74 PEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKE 133 Q + V + + + + + + S+ V K Sbjct: 70 SNNGSGQAQNSASLMPTVGPMHTDAEIEIVKSRAVVEPVVEQFKLNFTTSAKSVPVLGKI 129 Query: 134 AKIDELDLHRAIVALSEKMKAV--DDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGY 191 + + H A A + + P L+ A + + Sbjct: 130 SALFARPGHPLGAAFGMDSYAWGGEQFEVQSITVPKSLEGARLTLRALDR-GRYELSDAF 188 Query: 192 IDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANA-- 249 I T V + E + + + + + + T+ + L L + Sbjct: 189 GQQILTGVAGQEAEG--SGVTLFVKTLVARPGTEFYVTRYNQLDAVNGLAAGLQVTEKGR 246 Query: 250 -AGIKKPVYSNGQ-AVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQ 307 G+ + Y+ D +++ + E+A + LNGEL + V++ Sbjct: 247 DTGVVQLSYTGTDPHAITDIANAVAQSYLKQRTERAQEEASRMLTFLNGELPRLREEVKR 306 Query: 308 LT-KAHVNDVNFTPFKY 323 F + Sbjct: 307 TETALSEYQSKVGSFSF 323 >UniRef50_B5WFM2 Exopolysaccharide transport protein family n=1 Tax=Burkholderia sp. H160 RepID=B5WFM2_9BURK Length = 752 Score = 67.4 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 40/314 (12%), Positives = 87/314 (27%), Gaps = 17/314 (5%) Query: 67 SAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPY 126 + + + P + + + A F V E L+ + Sbjct: 187 TKSDLDKPIIGMVGQTLSLTQSTGHFKILVNSISANAGTTFNLYRSPVLEAIEILQKNFV 246 Query: 127 VMDQLKEAKIDELDLH---RAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEE 183 + ++ K++ I L +VA + + S A Sbjct: 247 ITEKGKDSGIFSAALQGDDPDVVAATLNEIGDLYVTQSIERRARQAAKSRASLEAELPT- 305 Query: 184 AQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYS 243 L ++ + +N L + ++++ L Sbjct: 306 ----LRSGLEVAEARLKSLKTKNETFDLSEEVTSYLQQISDAEASLMLLRQKR-ADLRAH 360 Query: 244 LDIANAA--GIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNR 301 A+ A GI++ + + D +L + E +A +V N Sbjct: 361 FSPAHPAVKGIEEQIVIQKNRISDVDARVKALPRK----EQETMRAEREVQVANSLYVGL 416 Query: 302 QYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRY 361 ++QL ++ + +P + P K +++ LSA++G M LR Sbjct: 417 INNIQQLKLVELD--KVGRVRKLDFARVPWEPAKPKKLLVIALSAILGMMSGLIYAFLRE 474 Query: 362 AMASRKQDAMMADH 375 A + Sbjct: 475 EFFGGVTSAQEIEQ 488 Score = 46.2 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/111 (10%), Positives = 32/111 (28%), Gaps = 1/111 (0%) Query: 28 DLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFT 87 +L + VL + + + A G+ +F+ + + ++ + L + Sbjct: 27 ELSRYLEVLLPNRWRIGGIAAAVLFLGVGYAFLASPTYEADILLQVDDNESNTGLLGDGS 86 Query: 88 KLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 L + + V Y+ + P+ + E Sbjct: 87 LLLNAKTPPSAESEILQSR-NVIAPVVERRHTYITALPHYFPLIGERIAKS 136 >UniRef50_B3QVI2 Capsular exopolysaccharide family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QVI2_CHLT3 Length = 796 Score = 67.0 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 45/322 (13%), Positives = 104/322 (32%), Gaps = 12/322 (3%) Query: 3 SLNIKQGSDAHFPDYPLASPS---NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISF 59 + + S +++P + S ++ D + S+L R K +++ V L + Sbjct: 9 NQAVATNSGSNYPVFQRESDFLELEDDFDFKRIFSLLLRYKWLILSSVIFSTLISALAIY 68 Query: 60 ILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSL--- 116 + S + E +L + + QS + Sbjct: 69 FSLPIYKSEGTMLVQESSGKLGRGAGSDLSNLLASTYGVGMGSTIANELFVLQSRKMSYK 128 Query: 117 LEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSF 176 L + L + + E + + + + + +SF Sbjct: 129 LAKVLLQERWQKGGELYPLLWEKYPDDSTIVSEDVLAQRIRKQLQVAQADKSADVINISF 188 Query: 177 TAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDAN 236 +P+ EA ++ +D STL +++ R+ LE + EK+++ + T+ QL Sbjct: 189 ESPSPFEASRMVDLTMDTYSTLSTEQNRLMARSALEF-LENEKQRVENNLRVTEEQLRDF 247 Query: 237 IQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELN- 295 + + A + K + ++ +++ A K ++ +AE Sbjct: 248 MNQKGLIQIDAQTTDVIKILTDLESKSQEIKVQRVAIDAALQNYKQQLNSFKPGIAEQYT 307 Query: 296 ----GELRNRQYLVEQLTKAHV 313 L QY + +L + Sbjct: 308 DAYGATLSRCQYRLAELETERL 329 Score = 46.2 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 36/317 (11%), Positives = 107/317 (33%), Gaps = 14/317 (4%) Query: 67 SAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLE--EYLRSS 124 S + LE + + ++ ++++ + + +K + + ++ Sbjct: 208 STLSTEQNRLMARSALEFLENEKQRVENNLRVTEEQLRDFMNQKGLIQIDAQTTDVIKIL 267 Query: 125 PYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEA 184 + + +E K+ + + A+ +++ + +++ + T + E Sbjct: 268 TDLESKSQEIKVQRVAIDAALQNYKQQLNSFKPGIAEQYTDAYGATLSRCQYRLAELETE 327 Query: 185 QTVLSGYIDYISTLVVKE-SLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYS 243 + ++ + L+ +++++ + K ++ ++QL + + N Sbjct: 328 RLLILSRNPGLKQKEENSPELKKIQDEISVLRSEIKVITSKMLSDDQDQLSSILSATNG- 386 Query: 244 LDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQY 303 DIA + K + D ++ +E+K + + D + L+ Sbjct: 387 -DIAAEILLTKRKLLELDIQRRQYDAQSAVLEQELEKKKLFFEKIPDNMIILARLKRNVD 445 Query: 304 LVEQL---------TKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVAC 354 + E+L A F + LP P K I +++ L G A Sbjct: 446 VNEKLYLTISERYAETALWEQTQFGLGRPIDYGYLPEAPIKPKKQIFLLVGFLFGLAGAV 505 Query: 355 GGVLLRYAMASRKQDAM 371 + ++ ++ + A Sbjct: 506 TFIYVKESLNTGIDGAE 522 >UniRef50_Q2SGP9 Uncharacterized protein involved in exopolysaccharide biosynthesis n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SGP9_HAHCH Length = 482 Score = 67.0 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 58/418 (13%), Positives = 128/418 (30%), Gaps = 84/418 (20%) Query: 29 LLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAV----VTPPEPVQWQELEK 84 L +++ VLW + V++V+ A ++S ++P+++T++ V P+ + L Sbjct: 3 LKHVLLVLWARRWVVLSVLLATITTTAVVSLLIPKEYTASTTVVLDVQTPDRIVGMVLPG 62 Query: 85 SFTKLRVLDLDIKIDRTEAFNLFIKKFQS---VSLLEEYLRSSP-------YVMDQLKEA 134 + + I ++ + E++L + ++ LK+ Sbjct: 63 MMSPGYMATQMDIITSDRVAQGVVRLLKLDENPETREKWLEETGGQGSLAVWLAPGLKKN 122 Query: 135 KIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTA---------------- 178 ++++ A+ Y T+ A Sbjct: 123 LEVSPARESNVISVEFSATDPRFAATAANAFAQAYIDTTIDLRAEPARKYAAWFEQQYET 182 Query: 179 --PTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKL-------------- 222 + AQ LS + +V + L+ KL T L Sbjct: 183 QRERLQRAQKALSDFQQQTGIVVTNDRLDFENQKLGELTAQLSLALAEGTDSSSKQGFHQ 242 Query: 223 ------AQDRIKTKNQLDANIQRLNYSLDI---------------ANAAGIKKPVYSNGQ 261 R QL +I RL L A+ K Sbjct: 243 GGDTLPEIMRNPLIIQLKTDIARLESRLQELSEDYGVNHPQYKSAASELASMKSRLRMET 302 Query: 262 AVKDDPDFSISLGADGIERKLE--IEKAVTDVAELNGELRNRQYL--------------V 305 A + ++ + + +L+ IE+ + EL + Q L Sbjct: 303 AKIAESISTVGRVSKAKQAELKEAIEEQKKKMLELKSQHDQIQILSHQVETAQRDFDAIS 362 Query: 306 EQLTKAHVNDVNFTP-FKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYA 362 ++LT++ + S P++ P + ++++ ++GG+++ G L+ Sbjct: 363 QRLTQSQLEAQTVQTNVSVLTPASPPLRHSKPILFLNLVIAVMLGGLLSVGAALILEL 420 >UniRef50_Q5NY54 Exopolysaccharide biosynthesis protein n=3 Tax=Proteobacteria RepID=Q5NY54_AZOSE Length = 760 Score = 67.0 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 29/339 (8%), Positives = 96/339 (28%), Gaps = 46/339 (13%) Query: 19 LASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQ 78 + ++ IDL + + + K TV+ + L +F++ + ++ + Sbjct: 42 VEEDDDDTIDLRAIWDTIVKRKWTVITFFAIVMVSVLTATFLMTPIYRASLTLQIERQEA 101 Query: 79 WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPY------------ 126 K V +++ D + + + +S SL + + Sbjct: 102 -----KVLDYQGVTPNEMQGDTKDFYETQYELLRSRSLAQRVIDQLNLGDHPVFAAANPS 156 Query: 127 --VMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEA 184 + A +E + + + A+ + + F + A Sbjct: 157 LLASLKALLAGGEEEPVEGDAEQIRKLKLTKAFLANLTIEPVRNSRLVKIHFDSSDPVLA 216 Query: 185 QTVLSGYID-------------------YISTLVVKESLENVRNKLEIKTQFEKEKLAQD 225 +++ + ++ + + ++ + E+ +E++ + Sbjct: 217 SRIVNAISEAFINVNLERRMDASSFAKVFLEERLQQLKVKLGETERELVAFAREEQIVRG 276 Query: 226 RIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIER----- 280 + + +Q +L A I+ L I+ Sbjct: 277 GEQEASVDTQVMQEFTTALAKAQQERIRAEALYQQLESGSVEGMPQVLENKVIQEFKGHK 336 Query: 281 ---KLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDV 316 + E ++ + ++ Q ++++ ++ Sbjct: 337 AKLETEYQENLKIYKPAYPKMVQLQSQIDEMQAKIAEEL 375 >UniRef50_A8F8H6 Lipopolysaccharide biosynthesis protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F8H6_THELT Length = 676 Score = 67.0 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 38/310 (12%), Positives = 97/310 (31%), Gaps = 26/310 (8%) Query: 20 ASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLIS-FILPQKWTSAAVVTPPEPVQ 78 + N E+ L +++++ R +A+ + ++ F + ++A + Sbjct: 1 MNNENTELSLADIMNIFKRRIWWFLAIFLITSFISVIYVMFFAKPVYEASAQLLVRTSQS 60 Query: 79 WQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDE 138 + + T+L + + + I+ +S +E+ + + + KI+ Sbjct: 61 SISIPSAVTQLIGI---SNVSGGSDISTEIELIKSRDNIEKLIEKLNLMELFKDQKKIEL 117 Query: 139 LDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTL 198 D+ I K+++V D +S + A +++ ID + Sbjct: 118 QDVVEVIREKWLKVESVKDTK-----------IIKISIEHEDPKLAAEMVNNLIDIYQEM 166 Query: 199 VVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPV-- 256 + + KL + + + + + YSL +K Sbjct: 167 RSELTTNESVVKLRFIEKQLPRIEQELKDVEEEIKKFKEENQIYSLSEQADNLVKYIAQY 226 Query: 257 ---YSNGQAVKDDPDFSISLGADGIER------KLEIEKAVTDVAELNGELRNRQYLVEQ 307 + + I D +++ E V +L +L + Q + Sbjct: 227 DSKTNEITLNIQQAEVEIKAAEDLLKKVDQKIISSETISTNPVVQQLRSKLVDLQVQLSA 286 Query: 308 LTKAHVNDVN 317 L + + D Sbjct: 287 LLQNYSEDDR 296 Score = 60.4 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 31/238 (13%), Positives = 77/238 (32%), Gaps = 16/238 (6%) Query: 137 DELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIS 196 D + +++ KK + + +S T+S + ++ + Sbjct: 227 DSKTNEITLNIQQAEVEIKAAEDLLKKVDQKIISSETISTNPVVQQLRSKLVD---LQVQ 283 Query: 197 TLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLD------IANAA 250 + ++ ++ + +E + + + A +Q +N + I A Sbjct: 284 LSALLQNYSEDDRRVVALKKQIEETQDLLQKEISKVVSAEVQTVNPAYTQLYTNFILKQA 343 Query: 251 GIKKPVYSNGQAVKDDPDFSISLGA-DGIERKLEIEKAVTDVAELNGELRNRQYLVEQLT 309 ++ + K ++ + IE+KL + + L+ Q Sbjct: 344 ELQVLQATLSAVEKIRDEYLKKVSVIPAIEQKLFELERERQAKQTTY-----LALLSQYE 398 Query: 310 KAHVNDV-NFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASR 366 +A + + + + +P K P K + V + ++G + V LR A R Sbjct: 399 EAKIGAAGSIDNIRIISNAVVPNKPSKPNKRLTVAIGGVLGIFLGILTVFLRDATDKR 456 >UniRef50_A9ANS7 Capsular exopolysaccharide family n=45 Tax=Burkholderia RepID=A9ANS7_BURM1 Length = 741 Score = 66.6 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 84/301 (27%), Gaps = 17/301 (5%) Query: 75 EPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEA 134 E Q + KL I FQS + E + + V L+ Sbjct: 203 ESAQGGGVTLLVQKLVARPGTQFTVTRYNDLDAITGFQSGIQVSEQGKQTGVVQISLEGK 262 Query: 135 KIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDY 194 ++ +A S + V ++ A E A+ L+ Y Sbjct: 263 DPEQTAAIANALAQSYLHQHVIAKQAEATKMLDFLKGEEPRLKA-DLERAEAALTQYQRT 321 Query: 195 ISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKK 254 ++ + + + LE Q+E++ AQ ++ + Sbjct: 322 SGSI---NASDEAKVYLEGSVQYEQQIAAQRLQLASLAQRFT-----------DSHPLVI 367 Query: 255 PVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVN 314 ++ + + + +++ + D V++L+ Sbjct: 368 AAKQQLAELQGEKEKFSNRFRSLPATEVKAVQLQRDAKVAEDIYVLLLNRVQELSVQKAG 427 Query: 315 DVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMAD 374 S P P K +I+ + +G ++ G V LR + +D + Sbjct: 428 T--GGNIHLIDSALRPGAPVKPKKVLILSAAVFLGLILGTGVVFLRRNLFQGIEDPDRIE 485 Query: 375 H 375 Sbjct: 486 R 486 Score = 46.2 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/119 (9%), Positives = 33/119 (27%), Gaps = 3/119 (2%) Query: 8 QGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTS 67 H P A ++ L L+ V+ ++ + A L ++ + + Sbjct: 3 NTQAKHSYADPTAKTDEEDVVLGQLLQVILDDIWLLLGIAVAVVALAGLYCYVAKPVYQA 62 Query: 68 AAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPY 126 V + +++ + + I+ +S ++ + Sbjct: 63 DVHVRVEGNDNTTQALTQTQTGAMINSG---PQQAPTDAEIEIIKSRGVVAPVVEQFKL 118 >UniRef50_D2PZ20 Lipopolysaccharide biosynthesis protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PZ20_9ACTO Length = 540 Score = 66.6 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 29/221 (13%), Positives = 66/221 (29%), Gaps = 10/221 (4%) Query: 30 LNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKL 89 + L R K ++ V + S + Q+WT+++ V V + K T Sbjct: 9 RDTAQALLRHKWLILGCVLLGIAGAAVFSLVQTQRWTASSQVVIGPAVPPALVGKLPT-- 66 Query: 90 RVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALS 149 D + + S +LL +S + + L + A++ Sbjct: 67 -GADKTGPLGMDLPAETQARVMSSPALLRSVAKS---LGMPTSDESAQSLASVTRVKAVT 122 Query: 150 EKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRN 209 + + + + + + A + EA+ +L+ ++ S Sbjct: 123 DNAYLITIDGPTADEAVRRANAIGRIYLAQRNNEAKALLT----TLAGQAQDRSRTAAAQ 178 Query: 210 KLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAA 250 + +Q + D D + + A+ A Sbjct: 179 SRTLVSQISEAIARGDTQTAAALRDQRVGLATEARQAADEA 219 >UniRef50_Q0FSG4 Exopolysaccharide polymerization/transport protein n=1 Tax=Roseovarius sp. HTCC2601 RepID=Q0FSG4_9RHOB Length = 763 Score = 66.6 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 46/308 (14%), Positives = 99/308 (32%), Gaps = 7/308 (2%) Query: 58 SFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLL 117 SF++ ++TS ++ P V E R +++ + + + V Sbjct: 182 SFVIDVRYTSQSIEMAPRAVNALMREYLRLSSRQQTANVERTQVWLSSRIEELAAGVQAS 241 Query: 118 EEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFT 177 E + S + + L + A+ A +E++ + A K + S Sbjct: 242 ERAVASYRRENQLMVPEG-EFLPIEIALNAANEQLVELQGQAVTAKVQADQLEDQIESGE 300 Query: 178 APTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANI 237 + A + + + + + T E + + + Q I Sbjct: 301 IEAIQLAPEERTEAVTEFEARYAELLQAE---QEALLTYDESAPVVVNTRRAMEQTRTLI 357 Query: 238 QRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGE 297 + I ++ + + + ++ + K +++ AE E Sbjct: 358 --VQEYRSILEQLRARERALAGQLSATREMIGEMNADYSSVMEKTVALRSLEREAEAKRE 415 Query: 298 LRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGV 357 L R T + + TP + P K GP IV+L+A G +++ G V Sbjct: 416 LYERMLEQYNSTSQLL-TFDATPARVIAWAVPPDTKSGPRSKRIVVLAAFAGLLLSIGVV 474 Query: 358 LLRYAMAS 365 L A+ + Sbjct: 475 LAIEALDN 482 Score = 47.0 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 31/289 (10%), Positives = 86/289 (29%), Gaps = 5/289 (1%) Query: 29 LLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTK 88 L +L+ R ++ V + L++ +T+ + V S Sbjct: 27 LRDLMMRFRRHWAVLVVGVASAVVLALIMVSNASPTYTANGAILIDPRVGQSPDGDSDIA 86 Query: 89 LRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVAL 148 +L D +E L ++ + ++ E L I + Sbjct: 87 PGLLLSDALTVDSELRVLGSREVTAATVRELGLGEPRASEPSALLGWIKGVFRIGDDGDG 146 Query: 149 SEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVR 208 + + ++ +++ ++ S E+ + Y + + +R Sbjct: 147 DATVAMLPEDMQQERLLEIARRNFVQGLAVERSGESFVIDVRYTSQSIEMAPRAVNALMR 206 Query: 209 NKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPD 268 L + ++ + + +T+ L + I+ L + A+ + N V + Sbjct: 207 EYLRLSSRQQTANVE----RTQVWLSSRIEEL-AAGVQASERAVASYRRENQLMVPEGEF 261 Query: 269 FSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVN 317 I + + +L + A++ + Q ++ + Sbjct: 262 LPIEIALNAANEQLVELQGQAVTAKVQADQLEDQIESGEIEAIQLAPEE 310 >UniRef50_Q3A4J7 Uncharacterized exopolysaccharide biosynthesis protein n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A4J7_PELCD Length = 804 Score = 66.2 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 37/306 (12%), Positives = 85/306 (27%), Gaps = 18/306 (5%) Query: 78 QWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKID 137 ++ + + + V L + +SV +E L+S +D +E Sbjct: 218 AYRNCDPALSSQVVNTLANVYLERNILFKSEEANKSVEFIERQLQSVRSNLDGAEEQLAA 277 Query: 138 ELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYIST 197 + +E + K+K+ S + + A L + + Sbjct: 278 YKSDSGVVEMGTEATSLLGLLTGKEKELAS------VELFRRQARFAVESLQKAMAEKKS 331 Query: 198 LVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVY 257 V +E+ + E + + ++ ++ + + + Sbjct: 332 YVPAVLMEDPVVASMAEKLATLEVEKRRLLVDMTEMHPEVRAVQGQIYQVQEKMLSTYQQ 391 Query: 258 SNGQAVKDDPDFSISLGA--------DGIERKLEIEKAVTDVAELNGELRNRQYLVEQLT 309 K L ER L ++V +++ +L Sbjct: 392 LLSGLSKQSETVRRDLQRYEARVRKLPAAERDLARLTRRSNVNAEIYTFLLQKHEEARLA 451 Query: 310 KAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQD 369 +A + +P P KA ++L ++G M G L + +D Sbjct: 452 RA----ATISSVNIIDPAIVPDHPVKPQKAKNLLLGLIVGCMAGIGLAFLLEYLDDSIKD 507 Query: 370 AMMADH 375 +A Sbjct: 508 GELAKR 513 Score = 44.3 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 34/305 (11%), Positives = 87/305 (28%), Gaps = 25/305 (8%) Query: 6 IKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKW 65 + + S+ + + E+ L + I+VL+R ++ + + L +F + + Sbjct: 1 MMENSNEYNSY---SYLEEEEVHLQDYINVLFRRRRAAIIAFCVIFVSVALYTFWVSPVF 57 Query: 66 TSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSP 125 + A + + + D+ + R I+ +S + +EE +R Sbjct: 58 EAKATLHVRDDKVSGN---------GVLDDLGLSRENPIETEIEILRSRTNIEEVVR-RL 107 Query: 126 YVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQ 185 ++ +E+ D + +E + ++ S L P Sbjct: 108 HLDWGTEESADDLKFALLDFESTAEDPSYTIKLVTNQRFRVSDADGRLLGEGRPGHLFKA 167 Query: 186 TVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLD 245 + ID + +E + A + K N + + + +L Sbjct: 168 KGIRLLIDDLQGEKGQEIELTALPFNAQVQSLREGIKASEVGKGTNIIQVAYRNCDPALS 227 Query: 246 IANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLV 305 + V + + E +E + + L + + Sbjct: 228 -------SQVVNTLANVYLERNIL-----FKSEEANKSVEFIERQLQSVRSNLDGAEEQL 275 Query: 306 EQLTK 310 Sbjct: 276 AAYKS 280 >UniRef50_C8S386 Capsular exopolysaccharide family n=1 Tax=Rhodobacter sp. SW2 RepID=C8S386_9RHOB Length = 730 Score = 65.8 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 48/318 (15%), Positives = 106/318 (33%), Gaps = 32/318 (10%) Query: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQEL 82 +EIDL I++L R ++ + V A L K+ + ++ Sbjct: 2 QPDEIDLRENIAILRRQRRLIGITVLVVVLATLAYLLTATPKYQATVLIQIDTGNSNLLD 61 Query: 83 EKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKI---DEL 139 + ++ ++ K+D ++ S + + V D ++ +++ Sbjct: 62 TSNSDGMQSAAINTKVDSE------VEILNSSATALAVIERVGLVSDPEFGPQLGLREKI 115 Query: 140 DLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTL--------------------SFTAP 179 L + S +++ + A +DE S TL S T+ Sbjct: 116 GLALGLDLSSARLRQIVGLAPSTQDEGEALASATLRAFQTALDARRRALTNLVAVSVTSE 175 Query: 180 TSEEAQTVLSGYID-YISTLVVKESLEN--VRNKLEIKTQFEKEKLAQDRIKTKNQLDAN 236 + A ++ + YI V + + R+ L + + +LA + +++N Sbjct: 176 DPKRAASLANATAQVYIQRQVAAKINSSVAARDVLSRQLATAQTELAASEERLNGFIESN 235 Query: 237 IQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNG 296 + RL A+ A ++ + + A + +L + + A L Sbjct: 236 LARLEAESGNADVAAMRHNLETAQAAQRSALGTLETLQGAISQGDWNAVSSSLGDAALAE 295 Query: 297 ELRNRQYLVEQLTKAHVN 314 + R L QL +A Sbjct: 296 LAKQRADLALQLQEAAAG 313 >UniRef50_C5CVD8 Exopolysaccharide transport protein family n=2 Tax=Variovorax paradoxus S110 RepID=C5CVD8_VARPS Length = 755 Score = 65.8 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 37/318 (11%), Positives = 91/318 (28%), Gaps = 16/318 (5%) Query: 3 SLNIKQGSDAHFPDYPLASPS----NNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLIS 58 + S+A P+A + ++ I L LI ++ K V A+ GL+ Sbjct: 2 NTPAVNTSNAARIGQPVAPSTPGAGDDNIHLSELIDIVLDHKWLVTAITALSLVLGLVYI 61 Query: 59 FILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLE 118 + + S +V + + T + + +V Sbjct: 62 LLSTPVYQSNLLVQVEDAAADAKGFLGETSTLFDVKTPATGEIQVIRSRMVIGAAVDQTR 121 Query: 119 EYLRSSPYVMDQLKEAKIDELDLHRA-----IVALSEKMKAVDDNASKKKDEPSLYTSWT 173 Y+ + P + L + + +D + Sbjct: 122 AYIEAKPNYLPILGPWLARRASGLSEPGFLGMSGYVSGKEKIDVARFDVPPALEDEEPFV 181 Query: 174 LSFTAP-TSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQ 232 L+ + L + L + L++ +++ + K + ++ Sbjct: 182 LTAQGQGKYTLSHDALDQPLAGTVGLPLHHVLDD--GAIDLLIDKLEGKPGAQFVVSRAS 239 Query: 233 LDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDD--PDFSISLGADGIERKLE--IEKAV 288 I+ L L + + + + D ++G +++ +E +A Sbjct: 240 QLHTIEDLQKRLQLIEQGKQSNVISAALEDSDRDRLSRILNAIGDQYVQQNVERKAAEAQ 299 Query: 289 TDVAELNGELRNRQYLVE 306 + LN +L + +E Sbjct: 300 KTLVFLNEQLPEFKRQLE 317 Score = 45.0 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 36/296 (12%), Positives = 82/296 (27%), Gaps = 15/296 (5%) Query: 82 LEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEY-LRSSPYVMDQLKEAKIDELD 140 L+ L + L+ K + + L + L + + A D Sbjct: 213 LDDGAIDLLIDKLEGKPGAQFVVSRASQLHTIEDLQKRLQLIEQGKQSNVISAALEDSDR 272 Query: 141 LHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVV 200 + + + + V N +K E + + + Y + + Sbjct: 273 DRLSRILNAIGDQYVQQNVERKAAEAQKTLVFLNEQLPEFKRQLEASEDAYTRFRNKNGT 332 Query: 201 KESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNG 260 E + L + + + L + + + A I+K + Sbjct: 333 VAFDEEAKGVLAQTIELQTKLLETQQKRRELAARFTDSNTRVKTIDGQIAAIEKEIGGLN 392 Query: 261 QAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTP 320 V + + + + DV +G ++ Q QL + Sbjct: 393 ARV-----------SRMPTLQQDALRLERDVRVNSGLYQSLQNNALQLRLVK--EGKTGN 439 Query: 321 FKYQLSPSLPVKKDGPGKAIIVILSALIGGMV-ACGGVLLRYAMASRKQDAMMADH 375 + P + P K +I+ L+ +G +V ++R + QD + Sbjct: 440 VRVLDKAVKPKQPVKPQKPLILALALALGLLVSGAALAIVRSRFFTGIQDPQEIEA 495 >UniRef50_B2T0D7 Exopolysaccharide transport protein family n=6 Tax=Burkholderia RepID=B2T0D7_BURPP Length = 744 Score = 65.8 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 32/315 (10%), Positives = 88/315 (27%), Gaps = 20/315 (6%) Query: 13 HFPDYPLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVT 72 +F + +E+ L + + + R +T++ V G +F+ P + + + Sbjct: 4 NFENRYTDVSGPDELHLSDYLRTIVRGWRTIVVVTLIALALGCAYAFLAPPTYRADVLF- 62 Query: 73 PPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRS-------SP 125 + K + L D + I+ +S + EE ++ +P Sbjct: 63 --HVEDKTANANANGKDSLPPLTGMFDTKPSTAAEIELLKSRLVTEETVKKLHLDITATP 120 Query: 126 YVMDQLKE------AKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAP 179 + L + I + S+ +Y + + Sbjct: 121 RYFPVIGGMIAGLVNGQWGFKLPQFINLSGYAWGDESISVSQFDTSKEMYDATFTLVSGN 180 Query: 180 TSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQR 239 +G + + + ++ + + + R Sbjct: 181 DGSYVLRDKNGIAILSGKVGETVQTDTADGPITLRVDKLVGPAGSRFELQRASTLSTVDR 240 Query: 240 LNYSLDIAN---AAGIKKPVYSNGQAVKDDPDFSIS-LGADGIERKLEIEKAVTDVAELN 295 L +L + +G+ + G A + + + +A +A L+ Sbjct: 241 LQKALVVQETTLQSGVIRASLEGGDAGLTAAIVNSMAREFVRQDVESRSTEAEHMLAFLD 300 Query: 296 GELRNRQYLVEQLTK 310 +L + ++ + Sbjct: 301 QQLPGLRKELDDAEQ 315 Score = 51.6 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 54/185 (29%), Gaps = 17/185 (9%) Query: 160 SKKKDEPSLYTSWTLSFTAPTSEEAQTVLSG----YIDYISTLVVKESLENVRNKLEIKT 215 + + S L+F + L Y + +T + E R L+ Sbjct: 282 RQDVESRSTEAEHMLAFLDQQLPGLRKELDDAEQRYNKFRNTHGTVDLGEESRLLLQQIV 341 Query: 216 QFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGA 275 + + + + + + + A A ++ + ++V ++ Sbjct: 342 DNKTKLMDLQQQRAEMSQRFTANHPAVAALDAQIAALQGAAANMNRSV--------AVMP 393 Query: 276 DGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDG 335 D + L + + V EL L N + V +V + P + Sbjct: 394 DTEQTALRLLRDVHVDTELYTNLLNSAQQLRVAKAGQVGNV-----RVVDFAEAPDEPVR 448 Query: 336 PGKAI 340 P + + Sbjct: 449 PKRVL 453 >UniRef50_D1BLU6 Lipopolysaccharide biosynthesis protein n=3 Tax=Veillonella RepID=D1BLU6_VEIPT Length = 481 Score = 65.8 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 37/272 (13%), Positives = 92/272 (33%), Gaps = 37/272 (13%) Query: 27 IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSF 86 IDL + VL + ++ ++ + A G +F+ P + S +++ + Sbjct: 5 IDLKEVGRVLIKKRRKIINITVACMVLGGAYAFLAPSTYQSTSMLRIKQAQSLSN----- 59 Query: 87 TKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIV 146 + L + + N + +S +++E + + ++ R Sbjct: 60 SVLSSANAYSDSMSRQLMNTDAEILKSRNVVEPVITAIEDPEGTGNAPTYEDFVKTRI-- 117 Query: 147 ALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLEN 206 + +S T + E+AQ + L++ L+ Sbjct: 118 ---------------ETKPYKETELLQVSVTGKSPEQAQE--------ANQLLIDTFLKR 154 Query: 207 VRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDD 266 + ++ + +E L + + K++ L + + I VYS +K Sbjct: 155 LAEISHVEQRTTREFLQKRVVTAKSE-------LEQAENKLQQFQIDNKVYSTADQMKGL 207 Query: 267 PDFSISLGADGIERKLEIEKAVTDVAELNGEL 298 D + + + +L++E A + +N +L Sbjct: 208 TDKITLIDREKAQNQLDLETAQAALGSINEQL 239 Score = 65.4 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 41/279 (14%), Positives = 96/279 (34%), Gaps = 14/279 (5%) Query: 100 RTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNA 159 F + S ++ + + +E ++LDL A AL + + +A Sbjct: 184 AENKLQQFQIDNKVYSTADQMKGLTDKITLIDREKAQNQLDLETAQAALGSINEQL-GSA 242 Query: 160 SKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEK 219 K + + ++ S +A + ++ + + + +E ++ L + Sbjct: 243 GKSIADSATVQAYKGQLADLESRKASYIGKYTDEHPAMKEINQQIEEAKSGLNAEINAIA 302 Query: 220 EKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIE 279 + A + L A+ + +L +A G + Sbjct: 303 SQQAPSSNSAQQGLLADKFKNEAALAVAQGKQSTLVELDKANEEAIKGLPEKERGYIQAK 362 Query: 280 RKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFT-PFKYQLSPSLPVKKDGPGK 338 R +++ + + Q L +L +A V +V + P+LP K P K Sbjct: 363 RDVDVAQDI------------YQMLSTRLEEAKVAEVMVPNEVQIVDPPTLPEKAIAPRK 410 Query: 339 AIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADHLV 377 +I++ SA++G + C L ++ + Q + ++ Sbjct: 411 ILIILGSAILGLIFGCLYTLGQFFGNRKVQSVQEINDIL 449 >UniRef50_B0JLU2 Protein-tyrosine kinase n=2 Tax=Microcystis aeruginosa RepID=B0JLU2_MICAN Length = 769 Score = 65.8 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 45/349 (12%), Positives = 120/349 (34%), Gaps = 36/349 (10%) Query: 1 MSSLN---IKQGSDAHFPDY------PLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFA 51 M++ +K S + P + P + E++L ++SV+ + + Sbjct: 1 MNNQQNGALKTQSQGNLPVFAQPAFIPSLTQEEEELNLRQVLSVVKHRWWIIAGITLGVT 60 Query: 52 CAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKF 111 A +F+ + ++ +P++ + +L + + I Sbjct: 61 GAIAAWTFLKTPIYQGRFLLLIGQPIEENKNSLKLAAQDILPQLGGENID--YETQIAVL 118 Query: 112 QSVSLLEEYLRS-SPYVMDQLKEAKIDELDLHRAIVALSEKMKA--VDDNASKKKDEPSL 168 +S LL L +P D I + ++ E K + ++ + + Sbjct: 119 KSPQLLNPILSKITPQYPDFTYSDLISKTGKSDLKISQLEDTKVLEIVYENAEPEKIKLV 178 Query: 169 YTSWTLSFTAPTSEEAQTVLSGYIDYISTL--VVKESLENVRNKLEIKTQFEKEKLAQDR 226 + + +S+E +T ++ +D+++ V++E + +++ +++ Q D Sbjct: 179 LDNLARHYLNYSSQERKTEINQGLDFVNAQLPVLQERVNSLQKQMQQFRQQYNF---LDP 235 Query: 227 IKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEK 286 K +L + + +A A I+ +++++ + Sbjct: 236 DKEATRLSQQLTSIEQEYRVAQVA-----------------LNEINSRYQALQQQVGLAP 278 Query: 287 AVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDG 335 +A E Q L++QL + V + + SP + ++ Sbjct: 279 NQAIIATYLSESPGYQDLLKQLQEVEVELAKQSAVFAKDSPIIATLEEK 327 >UniRef50_D1UIR6 Capsular exopolysaccharide family n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UIR6_9BURK Length = 803 Score = 65.8 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 63/233 (27%), Gaps = 13/233 (5%) Query: 154 AVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEI 213 + + + ++ + S+ +E AQ S ++++++ V + E + + + Sbjct: 251 QLSYSGTDAHAITAITNAVAASYLKQRTERAQEEASHMLEFLNSEVPRLRAEVKKTETAL 310 Query: 214 KTQFEKEKLAQDRIKT-----------KNQLDANIQRLNYSLDIANAAGIKKPVYSNGQA 262 K Q + K IQR + + V S A Sbjct: 311 SEYQSKVGSFQPTQEAGVYLAGGLDYEKQIAALRIQRAQLLRRFTEESPEVQQVDSQLSA 370 Query: 263 VKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFK 322 + + + D +++L+ + Sbjct: 371 MAREKARFEDHFTTLPSSERNALALQRDAKVAEEIYVALLNKIQELSISRAGT--IGNVH 428 Query: 323 YQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADH 375 LP + P A+I+ L+G + R + D + Sbjct: 429 IIDEALLPSRPVKPKSALIISAGTLLGVIGGILFAFCRRKFFTGVADPEFVER 481 Score = 47.7 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 35/327 (10%), Positives = 93/327 (28%), Gaps = 24/327 (7%) Query: 18 PLASPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPV 77 P + + + +L+ ++ V+ + + A ++ + I +++ A++ Sbjct: 11 PAPDGDEDAV-MRDLLRMVMEQIWWVIGIAGSVILAAVVYTKIATPVYSADALLQVDAQS 69 Query: 78 QWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKID 137 + + + E + +S +++E + Sbjct: 70 NGNSAQGQKLLSLMPSIGPMRTEAEI-----EIIKSRAVVEPVVEQFKLNFSTSANTVPV 124 Query: 138 ELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYID--YI 195 + + A S + E AQ L + Y+ Sbjct: 125 LGKISALFARPGQPFGAPFGLNEYAWGGEQFEVSSI--VVPKSLEGAQLTLRALGNGRYV 182 Query: 196 STLVVKESLENVRNKLEIKTQFEKEKLAQDRIK-------TKNQLDANIQRLNYSLDIAN 248 +L +E K + + + T+ + L+ SL +A Sbjct: 183 LCDAFGATLLTGVAGIEAKGHDITLLVEKLVARPGTEFHVTRFNQLDAVSALSTSLHVAE 242 Query: 249 A---AGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTD--VAELNGELRNRQY 303 G+ + YS G + ++ A ++++ E + + LN E+ + Sbjct: 243 KGRDTGVVQLSYS-GTDAHAITAITNAVAASYLKQRTERAQEEASHMLEFLNSEVPRLRA 301 Query: 304 LVEQLT-KAHVNDVNFTPFKYQLSPSL 329 V++ F+ + Sbjct: 302 EVKKTETALSEYQSKVGSFQPTQEAGV 328 >UniRef50_Q319N0 Uncharacterized protein involved in exopolysaccharide biosynthesis-like protein n=1 Tax=Prochlorococcus marinus str. MIT 9312 RepID=Q319N0_PROM9 Length = 558 Score = 65.8 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 46/409 (11%), Positives = 108/409 (26%), Gaps = 68/409 (16%) Query: 21 SPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQ 80 S EIDL NL ++ KKT+ + G + + + W + Sbjct: 18 DQSEEEIDLKNLFNIFIEKKKTIAGITLTSFLLGCSFALLQKKLWQGQFQIVLSGSDINS 77 Query: 81 ELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELD 140 + + K ++ N ++ +S +L + + Sbjct: 78 SMNLALPKNNPINKLFNNSSRNNINTELEILKSPYILLPIFEYVMSEKNISDYKVNKFEE 137 Query: 141 LHRAIVALSEKMKAVDDNASKKKDEPSLYTS----WTLSFTAPTSEEAQTVLSGYIDYIS 196 + + + K + S K ++ L + + + + ++ I Y+ Sbjct: 138 WKKDYLEVKFKNNTNILDISYKDNDKDLIIPVLTKISKIYQQYSPNKKIETINTKISYLD 197 Query: 197 TLVVKE---------------------------------------SLENVRNKLEIKTQF 217 + ++N+ KL+ Sbjct: 198 DQIDIYKEKYKKSFEKALNFSFEKGLSTNLFSEINPNIIDQNDGVLIKNIEVKLDTLKNL 257 Query: 218 EKEKLAQDRIKTKNQLDANIQRLNYSLDIAN----------------AAGIKKPVYSNGQ 261 E + I+R+ + IKK + + + Sbjct: 258 EDSSALIAFSEANLISSEKIKRIKTIISEKEMQLIMYSKVYKDQDVVIKDIKKEILTLSK 317 Query: 262 AVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQL---------TKAH 312 D+ + + ++ + + ++ + +L + +++ Sbjct: 318 IFNDELKTFLKSQKEAAINRINAQNSSKEILIEHKKLVSEAIKNQRILINFEDTLRNMQF 377 Query: 313 VNDVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRY 361 P+K P + P K I IL G ++ VL RY Sbjct: 378 FLREKTVPWKLITQPLVSENPVAPQKRRIAILWTAAGFAISLFYVLFRY 426 >UniRef50_Q2G3B4 Protein-tyrosine kinase n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G3B4_NOVAD Length = 733 Score = 65.4 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 42/315 (13%), Positives = 94/315 (29%), Gaps = 5/315 (1%) Query: 10 SDAHFPDYPLASPSNNE--IDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTS 67 SD + P + + I L + +L+R + ++ V A GL I+ ++ + + Sbjct: 11 SDQYLPGHEVPHEETTGGLISLATIRGLLFRQRIILIGVTAAALVIGLTITLLMRPVYEA 70 Query: 68 AAVVTP-PEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPY 126 A V P V E + +++ ++ + V + + + Sbjct: 71 GATVRVDPTGVNIVEGQDLAPTPNSNEINRYMNTLGSVIQSKNMAYRVVDELKLDANDEF 130 Query: 127 VMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQT 186 + + + + + A E + D PS T+ F + A Sbjct: 131 LGEAFANGRPNGTTAKQWAYARREAAAGIAQ-GGVSVDIPSDNRIITIKFRSGNPRFASL 189 Query: 187 VLSGYID-YISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLD 245 V +GY D ++ + + N+ + ++ Q + K A R+ S Sbjct: 190 VANGYADAFVQDDIRRGLETNLYARNYLQEQIRTIGTKLQAAEMKANAYAKQNRIVGSSL 249 Query: 246 IANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLV 305 A A+ + G + S ++ E+ +A Sbjct: 250 AAPASDKEGGAAPGGTITVANLASINSTYTKLRADRIAAEQRWRAIANTPATQLPEVQQN 309 Query: 306 EQLTKAHVNDVNFTP 320 + + Sbjct: 310 ATIQALQTDRSKLVT 324 Score = 41.2 bits (94), Expect = 0.069, Method: Composition-based stats. Identities = 37/316 (11%), Positives = 93/316 (29%), Gaps = 18/316 (5%) Query: 69 AVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVM 128 A + + L + + + K + Y + + V Sbjct: 187 ASLVANGYADAFVQDDIRRGLETNLYARNYLQEQIRTIGTKLQAAEMKANAYAKQNRIVG 246 Query: 129 DQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVL 188 L D+ ++ A ++ K + A T Sbjct: 247 SSLAAPASDKEGGAAPGGTITVANLASINSTYTKLRADRIAAEQRWRAIANTP------- 299 Query: 189 SGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQ------LDANIQRLNY 242 + + + ++L+ R+KL + +++ + + + LDA I R++ Sbjct: 300 ATQLPEVQQNATIQALQTDRSKLVTQLAEMRQRYGSNYPQVREAKAQVDSLDAQITRIST 359 Query: 243 SLDIANAAGIKKPVYSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQ 302 + GI+ + + + + ++ + + E N Sbjct: 360 EIK----NGIRDQYQIALRQEQGLSGELQQVADETLDEQDRRVQYNILDREANALRTQLA 415 Query: 303 YLVEQLTKAHVN-DVNFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRY 361 L+E+ + +V+ P + P ++ + L+G +A G +LR Sbjct: 416 TLLERYNQLAAAANVDSGAVTKLDGAPTPGQPVSPNLVKNMLAALLLGTGLAIGLAVLRE 475 Query: 362 AMASRKQDAMMADHLV 377 A R + + + + Sbjct: 476 AFDDRLRSSEDVERKL 491 >UniRef50_C5CQW3 Exopolysaccharide transport protein family n=1 Tax=Variovorax paradoxus S110 RepID=C5CQW3_VARPS Length = 764 Score = 65.4 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 34/333 (10%), Positives = 96/333 (28%), Gaps = 22/333 (6%) Query: 47 VFAFACAGLLISFILPQK---WTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTEA 103 A A + P+ V + + L ++ Sbjct: 175 FLLTAGANGSYTLTHPKLDKPIAGTVGVPLDAQTPLGPIHLLVGSISGLPGAAFELVRQS 234 Query: 104 FNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNASKKK 163 L + Q + E + S V ++ +L + +++ V+ + + Sbjct: 235 KQLVLLDLQRELRVIEKGKQSSVVEVSWRDGNRTQLA--NLLNEVAQLYVRVNIDQKTAQ 292 Query: 164 DEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFEKEKLA 223 + + L+F + + L + + + ++ ++ E Sbjct: 293 AQRA------LNFLGTELPKLKLQLEQSEEIYNQYRNQNGTISLDDEARNALSQNLELQT 346 Query: 224 QDRIKTKNQLDANIQRLNYSLDIAN-AAGIKKPVYSNGQAVKDDPDFSISLGADGIERKL 282 + T+ +++ + + + + A I + G + + + L Sbjct: 347 KLFDATQKRIELSERFTSRDPSVMTVDAQIASLKKAMGTVEQRIRRMPMLQ-----QNSL 401 Query: 283 EIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKDGPGKAIIV 342 +++ + +L L N + + + +V + LP K P +I++ Sbjct: 402 RMQRDIKVNTDLYVSLLNSSLQMRLAKEGRIGNV-----RVLDQALLPEKPIRPKPSIVM 456 Query: 343 ILSALIGGMVACGGVLLRYAMASRKQDAMMADH 375 ++ + G G LR + + Sbjct: 457 GIALIAGLSFGAGSAFLRRSWRKTIASPAEIET 489 Score = 55.8 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 37/333 (11%), Positives = 87/333 (26%), Gaps = 11/333 (3%) Query: 4 LNIKQGSDAHFPDYPLASPSNNEID-LLNLISVLWRAKKTVMAVVFAFACAGLLISFILP 62 +N P P A+ S+N L + +L + + + G + P Sbjct: 1 MNAHWQPALPAPSVPDAAASDNPPSRLREHVDLLLDNRWRIAGITAVALLLGAAYAMFGP 60 Query: 63 QKWTSAAVVTPPEPV-QWQELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYL 121 + + + ++ +P L + E + Q++ + Y+ Sbjct: 61 RVYEANVLIQVEDPDRSGGTLVGDSASNALNAKTPTAGEAEILKSRLVLEQAIENTKLYI 120 Query: 122 RSSPYVMDQL--KEAKIDELDLHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAP 179 + P + + A+ + LS + + + D P TA Sbjct: 121 EAQPLYVPIVGAWLARHAKALSEPGFAGLSGYVSGKEQIVVAQMDVPVDLEGKRFLLTAG 180 Query: 180 TSEEAQTVLSGYIDYISTLVVKESLE--NVRNKLEIKTQFEKEKLAQDRIKTKNQLDANI 237 + + T+ +D V L+ + + + + Sbjct: 181 -ANGSYTLTHPKLDKPIAGTVGVPLDAQTPLGPIHLLVGSISGLPGAAFELVRQSKQLVL 239 Query: 238 QRLNYSLDIANAAGIKK--PVYSNGQAVKDDPDFSISLGADGIERKLE--IEKAVTDVAE 293 L L + V + + + ++ +A + Sbjct: 240 LDLQRELRVIEKGKQSSVVEVSWRDGNRTQLANLLNEVAQLYVRVNIDQKTAQAQRALNF 299 Query: 294 LNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLS 326 L EL + +EQ + + N Sbjct: 300 LGTELPKLKLQLEQSEEIYNQYRNQNGTISLDD 332 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.304 0.105 0.221 Lambda K H 0.267 0.0323 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,415,383,007 Number of Sequences: 3077464 Number of extensions: 48089688 Number of successful extensions: 270764 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 915 Number of HSP's successfully gapped in prelim test: 938 Number of HSP's that attempted gapping in prelim test: 268281 Number of HSP's gapped (non-prelim): 2889 length of query: 377 length of database: 1,040,396,356 effective HSP length: 130 effective length of query: 247 effective length of database: 640,326,036 effective search space: 158160530892 effective search space used: 158160530892 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 93 (40.8 bits)