BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (92 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AB51 Uncharacterized protein ychH n=109 Tax=Enterobac... 190 1e-47 UniRef50_D0ZGI7 Putative uncharacterized protein n=3 Tax=Enterob... 149 4e-35 UniRef50_A4TJP3 Membrane protein n=36 Tax=Enterobacteriaceae Rep... 143 2e-33 UniRef50_C7BN23 Similar to probable membrane protein ychh of esc... 101 6e-21 UniRef50_B4EVR2 Putative membrane protein n=6 Tax=Enterobacteria... 99 6e-20 UniRef50_B2Q0S5 Putative uncharacterized protein n=1 Tax=Provide... 93 3e-18 >UniRef50_P0AB51 Uncharacterized protein ychH n=109 Tax=Enterobacteriaceae RepID=YCHH_ECO57 Length = 92 Score = 190 bits (482), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 92/92 (100%), Positives = 92/92 (100%) Query: 1 MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAHGAVLSIFVGAILWLAG 60 MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAHGAVLSIFVGAILWLAG Sbjct: 1 MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAHGAVLSIFVGAILWLAG 60 Query: 61 ARVGGHEQVCDRYWWVRHYDKRCRRSDNRRHS 92 ARVGGHEQVCDRYWWVRHYDKRCRRSDNRRHS Sbjct: 61 ARVGGHEQVCDRYWWVRHYDKRCRRSDNRRHS 92 >UniRef50_D0ZGI7 Putative uncharacterized protein n=3 Tax=Enterobacteriaceae RepID=D0ZGI7_EDWTE Length = 92 Score = 149 bits (375), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 67/92 (72%), Positives = 77/92 (83%) Query: 1 MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAHGAVLSIFVGAILWLAG 60 MKRK A LLGNVLMGLGL+ MV GVGYS+L+QLPQ ++P YF+HGAV+SIF+GA+LWL G Sbjct: 1 MKRKGAELLGNVLMGLGLITMVGGVGYSVLSQLPQLDLPHYFSHGAVMSIFIGALLWLVG 60 Query: 61 ARVGGHEQVCDRYWWVRHYDKRCRRSDNRRHS 92 ARVGG E+V DRYWWVRHYDKRC R RH Sbjct: 61 ARVGGRERVADRYWWVRHYDKRCTRKTRERHP 92 >UniRef50_A4TJP3 Membrane protein n=36 Tax=Enterobacteriaceae RepID=A4TJP3_YERPP Length = 90 Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 63/92 (68%), Positives = 80/92 (86%), Gaps = 2/92 (2%) Query: 1 MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAHGAVLSIFVGAILWLAG 60 MKRK+A++LGN+LMGLGL MVVGVGYSIL ++ + +PQ+FAHGA++SIFVGA+LWLAG Sbjct: 1 MKRKSATVLGNMLMGLGLATMVVGVGYSILTEISELGLPQFFAHGAIMSIFVGALLWLAG 60 Query: 61 ARVGGHEQVCDRYWWVRHYDKRCRRSDNRRHS 92 AR+GG E V DRYWWV+H+DKRC + N+RHS Sbjct: 61 ARIGGREAVADRYWWVKHFDKRC--TKNQRHS 90 >UniRef50_C7BN23 Similar to probable membrane protein ychh of escherichia coli n=3 Tax=Enterobacteriaceae RepID=C7BN23_PHOAA Length = 91 Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 42/89 (47%), Positives = 67/89 (75%) Query: 1 MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAHGAVLSIFVGAILWLAG 60 MKR++A ++GNVLMG+G+ +V + Y++L + P++ + A+L +F+GA++WLAG Sbjct: 1 MKRQSAFIVGNVLMGIGMFTIVSSLAYTLLPHIFSLGWPEFLSEAALLGVFIGALVWLAG 60 Query: 61 ARVGGHEQVCDRYWWVRHYDKRCRRSDNR 89 A VGG E + DRYWW+R+YD+R RR+D+R Sbjct: 61 AGVGGREGIADRYWWLRNYDERYRRNDHR 89 >UniRef50_B4EVR2 Putative membrane protein n=6 Tax=Enterobacteriaceae RepID=B4EVR2_PROMH Length = 92 Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 41/92 (44%), Positives = 68/92 (73%) Query: 1 MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAHGAVLSIFVGAILWLAG 60 MK K+A +GN+LM +G+V+M+ +GY++L+ + +P + +++ IF+GA++WLAG Sbjct: 1 MKYKHAFAVGNLLMAIGMVLMLGSLGYNLLSHIFPLGLPDILSDASLMGIFIGALVWLAG 60 Query: 61 ARVGGHEQVCDRYWWVRHYDKRCRRSDNRRHS 92 AR+GG E V +RYWW+R++D+R RR DN R+ Sbjct: 61 ARIGGRETVAERYWWLRNHDERYRRHDNHRYP 92 >UniRef50_B2Q0S5 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q0S5_PROST Length = 90 Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 40/91 (43%), Positives = 61/91 (67%), Gaps = 2/91 (2%) Query: 1 MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAHGAVLSIFVGAILWLAG 60 MKRK A L+GN+LM LGL+VM+ + ++ + + N+P G++ IFVGA++WL G Sbjct: 1 MKRKTAVLVGNILMALGLIVMIGSIALNLSSHIFSLNLPDMITMGSLFGIFVGAMIWLTG 60 Query: 61 ARVGGHEQVCDRYWWVRHYDKRCRRSDNRRH 91 AR+GG E++ DRYW ++HY + DN R+ Sbjct: 61 ARIGGREKIADRYWLIKHYPHSNK--DNHRY 89 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AB51 Uncharacterized protein ychH n=109 Tax=Enterobac... 146 2e-34 UniRef50_D0ZGI7 Putative uncharacterized protein n=3 Tax=Enterob... 143 1e-33 UniRef50_B4EVR2 Putative membrane protein n=6 Tax=Enterobacteria... 139 3e-32 UniRef50_A4TJP3 Membrane protein n=36 Tax=Enterobacteriaceae Rep... 135 6e-31 UniRef50_C7BN23 Similar to probable membrane protein ychh of esc... 134 7e-31 UniRef50_B2Q0S5 Putative uncharacterized protein n=1 Tax=Provide... 128 4e-29 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P0AB51 Uncharacterized protein ychH n=109 Tax=Enterobacteriaceae RepID=YCHH_ECO57 Length = 92 Score = 146 bits (369), Expect = 2e-34, Method: Composition-based stats. Identities = 92/92 (100%), Positives = 92/92 (100%) Query: 1 MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAHGAVLSIFVGAILWLAG 60 MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAHGAVLSIFVGAILWLAG Sbjct: 1 MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAHGAVLSIFVGAILWLAG 60 Query: 61 ARVGGHEQVCDRYWWVRHYDKRCRRSDNRRHS 92 ARVGGHEQVCDRYWWVRHYDKRCRRSDNRRHS Sbjct: 61 ARVGGHEQVCDRYWWVRHYDKRCRRSDNRRHS 92 >UniRef50_D0ZGI7 Putative uncharacterized protein n=3 Tax=Enterobacteriaceae RepID=D0ZGI7_EDWTE Length = 92 Score = 143 bits (362), Expect = 1e-33, Method: Composition-based stats. Identities = 67/92 (72%), Positives = 77/92 (83%) Query: 1 MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAHGAVLSIFVGAILWLAG 60 MKRK A LLGNVLMGLGL+ MV GVGYS+L+QLPQ ++P YF+HGAV+SIF+GA+LWL G Sbjct: 1 MKRKGAELLGNVLMGLGLITMVGGVGYSVLSQLPQLDLPHYFSHGAVMSIFIGALLWLVG 60 Query: 61 ARVGGHEQVCDRYWWVRHYDKRCRRSDNRRHS 92 ARVGG E+V DRYWWVRHYDKRC R RH Sbjct: 61 ARVGGRERVADRYWWVRHYDKRCTRKTRERHP 92 >UniRef50_B4EVR2 Putative membrane protein n=6 Tax=Enterobacteriaceae RepID=B4EVR2_PROMH Length = 92 Score = 139 bits (350), Expect = 3e-32, Method: Composition-based stats. Identities = 41/92 (44%), Positives = 68/92 (73%) Query: 1 MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAHGAVLSIFVGAILWLAG 60 MK K+A +GN+LM +G+V+M+ +GY++L+ + +P + +++ IF+GA++WLAG Sbjct: 1 MKYKHAFAVGNLLMAIGMVLMLGSLGYNLLSHIFPLGLPDILSDASLMGIFIGALVWLAG 60 Query: 61 ARVGGHEQVCDRYWWVRHYDKRCRRSDNRRHS 92 AR+GG E V +RYWW+R++D+R RR DN R+ Sbjct: 61 ARIGGRETVAERYWWLRNHDERYRRHDNHRYP 92 >UniRef50_A4TJP3 Membrane protein n=36 Tax=Enterobacteriaceae RepID=A4TJP3_YERPP Length = 90 Score = 135 bits (339), Expect = 6e-31, Method: Composition-based stats. Identities = 59/89 (66%), Positives = 76/89 (85%) Query: 1 MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAHGAVLSIFVGAILWLAG 60 MKRK+A++LGN+LMGLGL MVVGVGYSIL ++ + +PQ+FAHGA++SIFVGA+LWLAG Sbjct: 1 MKRKSATVLGNMLMGLGLATMVVGVGYSILTEISELGLPQFFAHGAIMSIFVGALLWLAG 60 Query: 61 ARVGGHEQVCDRYWWVRHYDKRCRRSDNR 89 AR+GG E V DRYWWV+H+DKRC ++ Sbjct: 61 ARIGGREAVADRYWWVKHFDKRCTKNQRH 89 >UniRef50_C7BN23 Similar to probable membrane protein ychh of escherichia coli n=3 Tax=Enterobacteriaceae RepID=C7BN23_PHOAA Length = 91 Score = 134 bits (338), Expect = 7e-31, Method: Composition-based stats. Identities = 42/92 (45%), Positives = 67/92 (72%), Gaps = 1/92 (1%) Query: 1 MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAHGAVLSIFVGAILWLAG 60 MKR++A ++GNVLMG+G+ +V + Y++L + P++ + A+L +F+GA++WLAG Sbjct: 1 MKRQSAFIVGNVLMGIGMFTIVSSLAYTLLPHIFSLGWPEFLSEAALLGVFIGALVWLAG 60 Query: 61 ARVGGHEQVCDRYWWVRHYDKRCRRSDNRRHS 92 A VGG E + DRYWW+R+YD+R RR+D R+ Sbjct: 61 AGVGGREGIADRYWWLRNYDERYRRND-HRYP 91 >UniRef50_B2Q0S5 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q0S5_PROST Length = 90 Score = 128 bits (323), Expect = 4e-29, Method: Composition-based stats. Identities = 40/92 (43%), Positives = 61/92 (66%), Gaps = 2/92 (2%) Query: 1 MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAHGAVLSIFVGAILWLAG 60 MKRK A L+GN+LM LGL+VM+ + ++ + + N+P G++ IFVGA++WL G Sbjct: 1 MKRKTAVLVGNILMALGLIVMIGSIALNLSSHIFSLNLPDMITMGSLFGIFVGAMIWLTG 60 Query: 61 ARVGGHEQVCDRYWWVRHYDKRCRRSDNRRHS 92 AR+GG E++ DRYW ++HY + DN R+ Sbjct: 61 ARIGGREKIADRYWLIKHYPHSNK--DNHRYP 90 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.320 0.148 0.454 Lambda K H 0.267 0.0453 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 405,808,440 Number of Sequences: 3077464 Number of extensions: 15666358 Number of successful extensions: 65447 Number of sequences better than 1.0e-01: 6 Number of HSP's better than 0.1 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65435 Number of HSP's gapped (non-prelim): 12 length of query: 92 length of database: 1,040,396,356 effective HSP length: 62 effective length of query: 30 effective length of database: 849,593,588 effective search space: 25487807640 effective search space used: 25487807640 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.2 bits) S2: 87 (38.0 bits)