BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (331 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q7CQ37 Flagellar regulator flk n=114 Tax=Enterobacteria... 402 e-111 UniRef50_D2T7J6 Protein div n=4 Tax=Enterobacteriaceae RepID=D2T... 253 6e-66 UniRef50_A4TM69 Flagellar assembly regulatory protein, Flk n=36 ... 246 1e-63 UniRef50_Q2NSH8 Cell division protein n=1 Tax=Sodalis glossinidi... 189 8e-47 UniRef50_C6C9T9 Flagella biosynthesis regulator protein n=3 Tax=... 182 1e-44 UniRef50_UPI0001911B32 flagella biosynthesis regulator n=1 Tax=S... 166 1e-39 UniRef50_C6DA78 Flagella assembly protein n=4 Tax=Pectobacterium... 157 6e-37 UniRef50_D0KLB4 Flagella assembly protein n=1 Tax=Pectobacterium... 140 5e-32 UniRef50_UPI000190BBCC flagella biosynthesis regulator n=1 Tax=S... 87 8e-16 UniRef50_B3Y0N4 Predicted protein n=14 Tax=Escherichia coli RepI... 46 0.002 UniRef50_C5BGX9 Putative uncharacterized protein n=1 Tax=Edwards... 45 0.005 UniRef50_B1JN55 Putative uncharacterized protein n=2 Tax=Enterob... 41 0.050 >UniRef50_Q7CQ37 Flagellar regulator flk n=114 Tax=Enterobacteriaceae RepID=FLK_SALTY Length = 333 Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust. Identities = 201/333 (60%), Positives = 255/333 (76%), Gaps = 5/333 (1%) Query: 2 IQPISGPPPGQPPGQGDNLPSGTGNQPLSSQQRTSLESLMTKVTSLTQQQRAELWAGIRH 61 + PISG P QPPG+G N S QPLS QQRT LE L+T++ SLTQQQ AE+WAG++H Sbjct: 1 MHPISGAP-AQPPGEGRNPLSAASEQPLSMQQRTVLERLITRLISLTQQQSAEVWAGMKH 59 Query: 62 DIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGNNRQAVTDYIR 121 D+G+ D+PLLSRHFPAAE NL QRL AQ++H+ RQ+L+QL E L +GNNRQAV+D+IR Sbjct: 60 DLGIKNDAPLLSRHFPAAEQNLTQRLGVAQQNHANRQVLSQLTELLGVGNNRQAVSDFIR 119 Query: 122 HNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQPQQREATDRPLLPAEHNALKQLVTKLAA 181 +GQT L+QL+P+QLK +LTLLQ+G++ IPQPQQR ATDRPLLPAEHN L QLVTKLAA Sbjct: 120 QQYGQTALSQLTPDQLKNVLTLLQQGQLSIPQPQQRPATDRPLLPAEHNTLNQLVTKLAA 179 Query: 182 ATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWLQARQTLSQQNTPTLESLQMTLKQ 241 ATGE +K IWQSMLELSGVK GELIPAK F HL TWLQARQTLS Q+ PTL +LQ LKQ Sbjct: 180 ATGESNKLIWQSMLELSGVKSGELIPAKQFTHLATWLQARQTLSLQHAPTLHTLQAALKQ 239 Query: 242 PLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRVK----GIDPRVMQPLLN 297 PL+ EL A+ Y Q Y + Q+ L++AQ +D+LN ++ RRV+ ++P +QP+ Sbjct: 240 PLEPDELTAIKEYAQHTYQIQPQTVLTTAQVQDLLNHIFLRRVEREADELEPLSIQPIYR 299 Query: 298 PFPPMMDTLQNMATRPALWILLVAIILMLVWLV 330 PF PM++T++N++ RP L + + I+L L WLV Sbjct: 300 PFAPMIETVKNLSARPGLLFIALIIVLALFWLV 332 >UniRef50_D2T7J6 Protein div n=4 Tax=Enterobacteriaceae RepID=D2T7J6_ERWPY Length = 345 Score = 253 bits (646), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 155/333 (46%), Positives = 214/333 (64%), Gaps = 24/333 (7%) Query: 2 IQPISGPPPGQP-PGQ--GDNLPS-----GTGNQPLSSQQRTSLESLMTKVTSLTQQQRA 53 +QP+SGP G P PG+ + PS G G++PL+ QRT+LE L+ K+ SL+ + A Sbjct: 1 MQPLSGP--GTPLPGERPAIDAPSATARPGIGDRPLTPAQRTTLERLIVKIMSLSSLKSA 58 Query: 54 ELWAGIRHDIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGNNR 113 ELWAG+RH++G+ D+ L +RHFP AE L RL Q SH+ RQLL QL + L GNNR Sbjct: 59 ELWAGLRHEVGVKNDAGLQARHFPQAEQFLNIRLAQVQDSHATRQLLQQLSDLLPTGNNR 118 Query: 114 QAVTDYIRHNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQPQQREATDRPLLPAEHNALK 173 QAV+D+IR FG T L+ L+P+QL+ LT+LQ G+M IPQPQQ ATDR LLPAEH+AL Sbjct: 119 QAVSDFIRQQFGHTVLSSLNPDQLRQALTMLQNGQMAIPQPQQGHATDRTLLPAEHHALN 178 Query: 174 QLVTKLAAATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWLQARQTLSQQNTPTLE 233 Q +++LAAATGE ++W S+L++ + G+ IP++LF L +LQA QT +Q T TL Sbjct: 179 QQISRLAAATGEQPVKLWASLLKVVNLHSGDPIPSRLFPLLNQYLQASQTSTQHATSTLS 238 Query: 234 SLQMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRVKGI------ 287 L TLKQPLD E L Y QQ++ + Q+ LS+ Q +D+LN L+ RR + + Sbjct: 239 QLTATLKQPLDTGEQRLLEDYSQQRFNATPQTVLSATQIQDLLNLLFSRRAERLLEHPIA 298 Query: 288 ----DPR-VMQPLLNPFPPMMDTLQNMATRPAL 315 P+ + P+ PP+ LQ +A+RP L Sbjct: 299 DSERHPKPIAMPVWGALPPV---LQPLASRPVL 328 >UniRef50_A4TM69 Flagellar assembly regulatory protein, Flk n=36 Tax=Enterobacteriaceae RepID=A4TM69_YERPP Length = 345 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 144/345 (41%), Positives = 215/345 (62%), Gaps = 20/345 (5%) Query: 2 IQPISGPPPGQPPGQGDNLP-------SGTGNQPLSSQQRTSLESLMTKVTSLTQQQRAE 54 +QP++GP G P G ++ S +Q L+ QRT+LE L+ ++ +L+ + AE Sbjct: 1 MQPLNGP--GVPIGNDRHITPTKLTAQSTVEDQALTPAQRTTLEKLIVRIMALSPVKSAE 58 Query: 55 LWAGIRHDIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGNNRQ 114 +WAG+RH++ L LL+RHF AE L RL AQ++H+++QL QL L GNNRQ Sbjct: 59 IWAGLRHNLSLDATGDLLARHFQPAEQLLQTRLSQAQENHASQQLRQQLTALLPQGNNRQ 118 Query: 115 AVTDYIRHNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQPQQREATDRPLLPAEHNALKQ 174 AV+D+IR FG T L+QLS +L+ +L LLQ G + IPQPQ TDRPLLPAEH ++ Sbjct: 119 AVSDFIRQQFGHTVLSQLSHTELQQVLVLLQSGTLNIPQPQLTTLTDRPLLPAEHQNIQS 178 Query: 175 LVTKLAAATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWLQARQTLSQQNTPTLES 234 LV KL+AATGE +IWQ++ ++ GVK + +PA+ F L +LQ + LSQQ PTL + Sbjct: 179 LVAKLSAATGEQPTKIWQTLFDMVGVKHHDPLPARHFQLLSQFLQTKVALSQQTAPTLVN 238 Query: 235 LQMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRVKGIDP----- 289 LQ LKQP DA E L+ Y Q ++ S + L+ AQ DI+N L+ R++ + Sbjct: 239 LQTALKQPADAQEQQLLADYSQNRFQASPTTPLTQAQLNDIINILFAARLEKANAAQYLD 298 Query: 290 ---RVMQPLLNPFPPMM-DTLQNMATRPALWILLVAIILMLVWLV 330 + +QPL+NPF + ++LQ + +P+L + VA+I+++ +L+ Sbjct: 299 EEHKPLQPLINPFIASLPESLQPLLQKPSLVV--VALIIVIAFLL 341 >UniRef50_Q2NSH8 Cell division protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NSH8_SODGM Length = 309 Score = 189 bits (481), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 108/237 (45%), Positives = 153/237 (64%) Query: 29 LSSQQRTSLESLMTKVTSLTQQQRAELWAGIRHDIGLSGDSPLLSRHFPAAEHNLAQRLL 88 L++ QR +LE L+T++ +L+ + AE+WA + H + ++G L RHF E L RL+ Sbjct: 25 LTTAQRMTLERLITRIMALSPSKPAEIWAALFHHLQIAGGGELRVRHFLPTEQLLQGRLV 84 Query: 89 AAQKSHSARQLLAQLGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSPEQLKTILTLLQEGK 148 AQ++ + RQLL QL + L GNNRQAV+D+IR FG T L+QL QL+ +L LLQ G+ Sbjct: 85 TAQETLAGRQLLQQLTDLLPQGNNRQAVSDFIRSQFGHTVLSQLDAGQLRQVLHLLQNGQ 144 Query: 149 MVIPQPQQREATDRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGELIPA 208 + IP PQQ TDR LLPAEH AL QL+T+LAA TGE ++W+S+ + G+K G+ IPA Sbjct: 145 LDIPAPQQAAMTDRTLLPAEHQALSQLITRLAALTGETPTELWESLHRMMGLKSGDPIPA 204 Query: 209 KLFNHLVTWLQARQTLSQQNTPTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQS 265 + F L +LQ+ TLSQQ PTL +L LK P+ E A+ Y +Q + +Q+ Sbjct: 205 RHFPLLSQFLQSHLTLSQQGHPTLATLTAVLKHPVHGEEQQAVEQYCRQHFAADSQT 261 >UniRef50_C6C9T9 Flagella biosynthesis regulator protein n=3 Tax=Dickeya RepID=C6C9T9_DICDC Length = 413 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 132/373 (35%), Positives = 195/373 (52%), Gaps = 65/373 (17%) Query: 22 SGTGNQPLSSQQRTSLESLMTKVTSLTQQQRAELWAGIRHDIGLSGDSPLLSRHFPAAEH 81 S TG+ PL+S QRT LE L+ ++T + + AE+WAG+R+ +G+SG++ LLS F AA Sbjct: 41 STTGDTPLTSAQRTVLEKLVNQITGQSGAKSAEVWAGLRYSLGVSGNTDLLSSQFTAATQ 100 Query: 82 NLAQRLLAAQKSHSARQLLAQLGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSPEQLKTIL 141 L RL AQ + RQLL Q+ L+ GNNRQAV+++IR FG T L L+P QL+ ++ Sbjct: 101 ILQARLTTAQDAQQTRQLLQQVTNLLQQGNNRQAVSNFIRQQFGHTTLGSLTPSQLQQVV 160 Query: 142 TLLQEGKM------------VIPQ-------------------------------PQQRE 158 +LQ G + +PQ P Q Sbjct: 161 NVLQSGTLSPNTAVATPQNPTLPQPGMPTPSGGQPAAAQPSPPTSSGPLATSSLTPTQLA 220 Query: 159 AT--------------DRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGE 204 AT RPL AEHN+L QLV +L A +GE S Q+W++MLE+ + G+ Sbjct: 221 ATANLLGSSPGIALLTGRPLSAAEHNSLNQLVARLVALSGETSAQVWRTMLEMQKLDVGQ 280 Query: 205 LIPAKLFNHLVTWLQARQTLSQQNT-PTLESLQMTLKQPLDASELAALSAYIQQKYGLSA 263 IPA+ F L +LQ + L QQ+ TL SL TLKQP D E + L +++ + + Sbjct: 281 PIPAQHFQTLSQYLQTQTALLQQHATSTLLSLLTTLKQPADHQEQSLLQDFVRTSFNAAP 340 Query: 264 QSSLSSAQAEDILNQLYQRRVKGIDPRV---MQPLLNP----FPPMMDTLQNMATRPALW 316 Q+ L+ QA +++ LY+RR++ + +QP++NP PP L N AL Sbjct: 341 QTPLTPTQASEVVTFLYRRRLQQLQESSAVPVQPIINPLILALPPDWRPLFNRPLGLALI 400 Query: 317 ILLVAIILMLVWL 329 + LVA++L+ + L Sbjct: 401 LTLVAVLLLWILL 413 >UniRef50_UPI0001911B32 flagella biosynthesis regulator n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. M223 RepID=UPI0001911B32 Length = 83 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 83/83 (100%), Positives = 83/83 (100%) Query: 226 QQNTPTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRVK 285 QQNTPTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRVK Sbjct: 1 QQNTPTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRVK 60 Query: 286 GIDPRVMQPLLNPFPPMMDTLQN 308 GIDPRVMQPLLNPFPPMMDTLQN Sbjct: 61 GIDPRVMQPLLNPFPPMMDTLQN 83 >UniRef50_C6DA78 Flagella assembly protein n=4 Tax=Pectobacterium RepID=C6DA78_PECCP Length = 414 Score = 157 bits (396), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 129/415 (31%), Positives = 199/415 (47%), Gaps = 88/415 (21%) Query: 2 IQPISGPP---PGQPP-------GQGDNLPSGTGNQPLSSQQRTSLESLMTKVTSLTQQQ 51 +QP+SGP PG+ P + S G++PL+ QRT+LE+L+ KV +LT + Sbjct: 1 MQPVSGPGAPLPGERPVTSTTTSSASNATGSANGDRPLTLAQRTTLENLVLKVAALTTSK 60 Query: 52 RAELWAGIRHDIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGN 111 AE+W ++ +GL+ +S L SRH+ AE L RL AQ + +QLL +L + L GN Sbjct: 61 AAEVWTTVKQGLGLAENSELQSRHYQPAEQILQTRLTQAQDNGGRQQLLQRLTDMLSQGN 120 Query: 112 NRQAVTDYIRHNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQP----------QQREATD 161 NRQAV+D+I+ FG T L+ L+ QL+ ++TLLQ G+ IPQ Q + D Sbjct: 121 NRQAVSDFIQQRFGSTTLSALNKTQLQQVVTLLQNGQ--IPQSTAPANATQTAQAANSPD 178 Query: 162 RPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWLQAR 221 RPL PAE L QLVT+LA TGE ++ +++ + + G+ IP K L +LQA+ Sbjct: 179 RPLNPAEQRGLNQLVTRLATMTGEQPARVLSNLMMMQNLNAGDTIPLKHLPLLTQFLQAQ 238 Query: 222 QTLSQ------------QNTPT-------------------------------------- 231 L Q Q TPT Sbjct: 239 VELQQTQTLLRATSPASQGTPTNAGAAGAAPESLTANTANTTNANLSSTANLSSQPLSAQ 298 Query: 232 -------LESLQMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRV 284 L LQ L+QP+ A E L Y Q ++ + Q+ L+ Q D+L L+ +R+ Sbjct: 299 NALLSPNLAPLQALLQQPMTAQEQHLLMDYTQNRFNIGLQTPLTPMQVSDLLTFLFTQRI 358 Query: 285 ---KGIDPRVMQPLLNP-FPPMMDTL----QNMATRPALWILL-VAIILMLVWLV 330 + D LL+P F P++ +L Q++ +P +++ + L+W++ Sbjct: 359 QRAQETDWTATSQLLHPLFNPLIASLPLSWQSLFHKPMFLVIVSTCVAAFLLWVL 413 >UniRef50_D0KLB4 Flagella assembly protein n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KLB4_PECWW Length = 421 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 86/207 (41%), Positives = 126/207 (60%), Gaps = 12/207 (5%) Query: 25 GNQPLSSQQRTSLESLMTKVTSLTQQQRAELWAGIRHDIGLSGDSPLLSRHFPAAEHNLA 84 G++PL+ QRT+LE+L+ KV +LT + AE+W ++ +GL+ ++ L SRH+ AE L Sbjct: 38 GDRPLTLAQRTTLENLVLKVAALTTSKAAEVWTTVKQGLGLAENNELQSRHYQPAEQILQ 97 Query: 85 QRLLAAQKSHSARQLLAQLGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSPEQLKTILTLL 144 RL AQ + + LL +L E L GNNRQAV+D+IR FG T L+ LS QL+ ++TLL Sbjct: 98 TRLTQAQDNSGRQPLLQRLTEMLPQGNNRQAVSDFIRQQFGSTTLSALSKTQLQQVVTLL 157 Query: 145 QEGKMVIPQ-------PQQREA---TDRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSM 194 Q G+ IPQ PQ +A +RPL P E +L QLVT+LA TGE ++ ++ Sbjct: 158 QNGQ--IPQSTAPASTPQAAQAPNSPERPLSPVEQRSLNQLVTRLATMTGEQPARVLSNL 215 Query: 195 LELSGVKDGELIPAKLFNHLVTWLQAR 221 + + + G+ IP K L +LQA+ Sbjct: 216 MTMQNLTPGDTIPFKHLPLLTQFLQAQ 242 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 12/121 (9%) Query: 222 QTLSQQNT---PTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQ 278 Q L QNT P L LQ L+QP+ A E L Y Q ++ +S Q+ L+ Q D+L Sbjct: 300 QPLPTQNTLLSPNLAPLQALLQQPMTAQEQQLLIDYTQNRFNISLQTPLTPMQVSDLLAF 359 Query: 279 LYQRRV---KGIDPRVMQPLLNP-FPPMMDTL----QNMATRPALWILL-VAIILMLVWL 329 L+ +R+ + D LL+P F P++ +L Q++ +P +++ + L+W+ Sbjct: 360 LFTQRIQRSQETDWTTTSQLLHPLFNPLIASLPLSWQSLFHKPMFLVIVSTCVAAFLLWV 419 Query: 330 V 330 + Sbjct: 420 L 420 >UniRef50_UPI000190BBCC flagella biosynthesis regulator n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. 404ty RepID=UPI000190BBCC Length = 118 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 41/108 (37%), Positives = 70/108 (64%), Gaps = 5/108 (4%) Query: 228 NTPTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRVK-- 285 + PTL +LQ LKQPL+ EL A+ Y Q Y + Q+ L++AQ +D+LN ++ RRV+ Sbjct: 1 HAPTLHTLQAALKQPLEPDELTAIKEYAQHTYQIQPQTVLTTAQVQDLLNHIFLRRVERE 60 Query: 286 --GIDPRVMQPLLNPFPPMMDTLQNMATRPA-LWILLVAIILMLVWLV 330 ++P +QP+ PF PM++T++N++ RP L+I L+ ++ + W + Sbjct: 61 ADELEPLSIQPIYRPFAPMIETVKNLSARPGLLFIALIIVLALFGWFL 108 >UniRef50_B3Y0N4 Predicted protein n=14 Tax=Escherichia coli RepID=B3Y0N4_ECO11 Length = 216 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 6/124 (4%) Query: 26 NQPLSSQQRTSLESLMTKVTSLTQQQRAELWAGIRHDIGLSGDSPLLSRHFPAAEHNLAQ 85 ++PL QR L SL+ + + + +W + +IG++G + + AE L Sbjct: 45 DRPLLKAQRKELNSLVAAIAEASNTEAFIIWQKVHAEIGVAGIDDMTVNQYKTAESFL-H 103 Query: 86 RLLAAQKSHSARQLLAQLGEYLRLGNN---RQAVTDYIRHNFGQTPLNQLSPEQLKTILT 142 +L K H A + L L LR + RQ + Y NFG LN L+ QL++ L+ Sbjct: 104 AMLERCKDHDACKALVSL--LLRNSEDCGLRQKLLRYCHINFGTGRLNDLTRSQLQSALS 161 Query: 143 LLQE 146 L++ Sbjct: 162 WLEQ 165 >UniRef50_C5BGX9 Putative uncharacterized protein n=1 Tax=Edwardsiella ictaluri 93-146 RepID=C5BGX9_EDWI9 Length = 197 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 53/120 (44%) Query: 27 QPLSSQQRTSLESLMTKVTSLTQQQRAELWAGIRHDIGLSGDSPLLSRHFPAAEHNLAQR 86 +PL QR L L+ ++T +W + ++G++G L H+PAA L Sbjct: 41 RPLVPAQRMRLNQLVQQITDCGDDMGMTIWQKVYAELGVNGLDELTVSHYPAARGYLHIL 100 Query: 87 LLAAQKSHSARQLLAQLGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSPEQLKTILTLLQE 146 L A+ + + L+ L R+ + Y FG L++LS QL+ L L+E Sbjct: 101 LKQARAKSADKALIRLLQTGATTSIRRRQLQRYCHIQFGSGYLHELSRSQLRQALAWLEE 160 >UniRef50_B1JN55 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=B1JN55_YERPY Length = 212 Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 3/134 (2%) Query: 149 MVIPQPQQREATDRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGELIPA 208 +VIP E +RPL+PA+ L QLV ++ E IWQ + GV E + Sbjct: 33 IVIPTT---EIDNRPLVPAQRKQLNQLVKEIIETGHEEGFSIWQKVHAEIGVSSIEEMTV 89 Query: 209 KLFNHLVTWLQARQTLSQQNTPTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQSSLS 268 + ++LQA + + + + + LK SE L Y ++G + L+ Sbjct: 90 SHYQAAYSYLQALRDRYCEKEASKSLIHLLLKNTQQESERQQLIRYCHIQFGSGRLTELT 149 Query: 269 SAQAEDILNQLYQR 282 Q + L+ L ++ Sbjct: 150 RLQLQQALSWLDEK 163 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q7CQ37 Flagellar regulator flk n=114 Tax=Enterobacteria... 399 e-110 UniRef50_A4TM69 Flagellar assembly regulatory protein, Flk n=36 ... 357 4e-97 UniRef50_D2T7J6 Protein div n=4 Tax=Enterobacteriaceae RepID=D2T... 349 7e-95 UniRef50_Q2NSH8 Cell division protein n=1 Tax=Sodalis glossinidi... 299 7e-80 UniRef50_C6DA78 Flagella assembly protein n=4 Tax=Pectobacterium... 298 1e-79 UniRef50_C6C9T9 Flagella biosynthesis regulator protein n=3 Tax=... 289 1e-76 UniRef50_D0KLB4 Flagella assembly protein n=1 Tax=Pectobacterium... 265 2e-69 UniRef50_B3Y0N4 Predicted protein n=14 Tax=Escherichia coli RepI... 154 3e-36 UniRef50_UPI000190BBCC flagella biosynthesis regulator n=1 Tax=S... 129 1e-28 UniRef50_UPI0001911B32 flagella biosynthesis regulator n=1 Tax=S... 98 5e-19 Sequences not found previously or not previously below threshold: UniRef50_B1JN55 Putative uncharacterized protein n=2 Tax=Enterob... 114 3e-24 UniRef50_C5BGX9 Putative uncharacterized protein n=1 Tax=Edwards... 100 9e-20 UniRef50_B2NA81 Putative uncharacterized protein n=1 Tax=Escheri... 84 6e-15 UniRef50_Q7WDD7 Putative uncharacterized protein n=1 Tax=Bordete... 77 8e-13 UniRef50_B7NJL0 Putative uncharacterized protein n=2 Tax=Escheri... 66 3e-09 >UniRef50_Q7CQ37 Flagellar regulator flk n=114 Tax=Enterobacteriaceae RepID=FLK_SALTY Length = 333 Score = 399 bits (1025), Expect = e-110, Method: Composition-based stats. Identities = 201/333 (60%), Positives = 255/333 (76%), Gaps = 5/333 (1%) Query: 2 IQPISGPPPGQPPGQGDNLPSGTGNQPLSSQQRTSLESLMTKVTSLTQQQRAELWAGIRH 61 + PISG P QPPG+G N S QPLS QQRT LE L+T++ SLTQQQ AE+WAG++H Sbjct: 1 MHPISGA-PAQPPGEGRNPLSAASEQPLSMQQRTVLERLITRLISLTQQQSAEVWAGMKH 59 Query: 62 DIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGNNRQAVTDYIR 121 D+G+ D+PLLSRHFPAAE NL QRL AQ++H+ RQ+L+QL E L +GNNRQAV+D+IR Sbjct: 60 DLGIKNDAPLLSRHFPAAEQNLTQRLGVAQQNHANRQVLSQLTELLGVGNNRQAVSDFIR 119 Query: 122 HNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQPQQREATDRPLLPAEHNALKQLVTKLAA 181 +GQT L+QL+P+QLK +LTLLQ+G++ IPQPQQR ATDRPLLPAEHN L QLVTKLAA Sbjct: 120 QQYGQTALSQLTPDQLKNVLTLLQQGQLSIPQPQQRPATDRPLLPAEHNTLNQLVTKLAA 179 Query: 182 ATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWLQARQTLSQQNTPTLESLQMTLKQ 241 ATGE +K IWQSMLELSGVK GELIPAK F HL TWLQARQTLS Q+ PTL +LQ LKQ Sbjct: 180 ATGESNKLIWQSMLELSGVKSGELIPAKQFTHLATWLQARQTLSLQHAPTLHTLQAALKQ 239 Query: 242 PLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRVK----GIDPRVMQPLLN 297 PL+ EL A+ Y Q Y + Q+ L++AQ +D+LN ++ RRV+ ++P +QP+ Sbjct: 240 PLEPDELTAIKEYAQHTYQIQPQTVLTTAQVQDLLNHIFLRRVEREADELEPLSIQPIYR 299 Query: 298 PFPPMMDTLQNMATRPALWILLVAIILMLVWLV 330 PF PM++T++N++ RP L + + I+L L WLV Sbjct: 300 PFAPMIETVKNLSARPGLLFIALIIVLALFWLV 332 >UniRef50_A4TM69 Flagellar assembly regulatory protein, Flk n=36 Tax=Enterobacteriaceae RepID=A4TM69_YERPP Length = 345 Score = 357 bits (915), Expect = 4e-97, Method: Composition-based stats. Identities = 141/345 (40%), Positives = 212/345 (61%), Gaps = 18/345 (5%) Query: 2 IQPISGPPPGQPPGQGDNLP-------SGTGNQPLSSQQRTSLESLMTKVTSLTQQQRAE 54 +QP++GP G P G ++ S +Q L+ QRT+LE L+ ++ +L+ + AE Sbjct: 1 MQPLNGP--GVPIGNDRHITPTKLTAQSTVEDQALTPAQRTTLEKLIVRIMALSPVKSAE 58 Query: 55 LWAGIRHDIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGNNRQ 114 +WAG+RH++ L LL+RHF AE L RL AQ++H+++QL QL L GNNRQ Sbjct: 59 IWAGLRHNLSLDATGDLLARHFQPAEQLLQTRLSQAQENHASQQLRQQLTALLPQGNNRQ 118 Query: 115 AVTDYIRHNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQPQQREATDRPLLPAEHNALKQ 174 AV+D+IR FG T L+QLS +L+ +L LLQ G + IPQPQ TDRPLLPAEH ++ Sbjct: 119 AVSDFIRQQFGHTVLSQLSHTELQQVLVLLQSGTLNIPQPQLTTLTDRPLLPAEHQNIQS 178 Query: 175 LVTKLAAATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWLQARQTLSQQNTPTLES 234 LV KL+AATGE +IWQ++ ++ GVK + +PA+ F L +LQ + LSQQ PTL + Sbjct: 179 LVAKLSAATGEQPTKIWQTLFDMVGVKHHDPLPARHFQLLSQFLQTKVALSQQTAPTLVN 238 Query: 235 LQMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRVKGIDP----- 289 LQ LKQP DA E L+ Y Q ++ S + L+ AQ DI+N L+ R++ + Sbjct: 239 LQTALKQPADAQEQQLLADYSQNRFQASPTTPLTQAQLNDIINILFAARLEKANAAQYLD 298 Query: 290 ---RVMQPLLNPFPPMM-DTLQNMATRPALWILLVAIILMLVWLV 330 + +QPL+NPF + ++LQ + +P+L ++ + I++ + + Sbjct: 299 EEHKPLQPLINPFIASLPESLQPLLQKPSLVVVALIIVIAFLLAI 343 >UniRef50_D2T7J6 Protein div n=4 Tax=Enterobacteriaceae RepID=D2T7J6_ERWPY Length = 345 Score = 349 bits (896), Expect = 7e-95, Method: Composition-based stats. Identities = 154/333 (46%), Positives = 213/333 (63%), Gaps = 24/333 (7%) Query: 2 IQPISGPP---PGQPPGQGDNLPSGT-----GNQPLSSQQRTSLESLMTKVTSLTQQQRA 53 +QP+SGP PG+ P + PS T G++PL+ QRT+LE L+ K+ SL+ + A Sbjct: 1 MQPLSGPGTPLPGERP--AIDAPSATARPGIGDRPLTPAQRTTLERLIVKIMSLSSLKSA 58 Query: 54 ELWAGIRHDIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGNNR 113 ELWAG+RH++G+ D+ L +RHFP AE L RL Q SH+ RQLL QL + L GNNR Sbjct: 59 ELWAGLRHEVGVKNDAGLQARHFPQAEQFLNIRLAQVQDSHATRQLLQQLSDLLPTGNNR 118 Query: 114 QAVTDYIRHNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQPQQREATDRPLLPAEHNALK 173 QAV+D+IR FG T L+ L+P+QL+ LT+LQ G+M IPQPQQ ATDR LLPAEH+AL Sbjct: 119 QAVSDFIRQQFGHTVLSSLNPDQLRQALTMLQNGQMAIPQPQQGHATDRTLLPAEHHALN 178 Query: 174 QLVTKLAAATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWLQARQTLSQQNTPTLE 233 Q +++LAAATGE ++W S+L++ + G+ IP++LF L +LQA QT +Q T TL Sbjct: 179 QQISRLAAATGEQPVKLWASLLKVVNLHSGDPIPSRLFPLLNQYLQASQTSTQHATSTLS 238 Query: 234 SLQMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRVKGI------ 287 L TLKQPLD E L Y QQ++ + Q+ LS+ Q +D+LN L+ RR + + Sbjct: 239 QLTATLKQPLDTGEQRLLEDYSQQRFNATPQTVLSATQIQDLLNLLFSRRAERLLEHPIA 298 Query: 288 ----DPRVM-QPLLNPFPPMMDTLQNMATRPAL 315 P+ + P+ PP+ LQ +A+RP L Sbjct: 299 DSERHPKPIAMPVWGALPPV---LQPLASRPVL 328 >UniRef50_Q2NSH8 Cell division protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NSH8_SODGM Length = 309 Score = 299 bits (766), Expect = 7e-80, Method: Composition-based stats. Identities = 116/265 (43%), Positives = 166/265 (62%), Gaps = 3/265 (1%) Query: 2 IQPISGPPPGQPPGQGDNLPSGTGNQPLSSQQRTSLESLMTKVTSLTQQQRAELWAGIRH 61 +QP++GP +G P +QPL++ QR +LE L+T++ +L+ + AE+WA + H Sbjct: 1 MQPVTGPGTPP---RGQTPPPPGPDQPLTTAQRMTLERLITRIMALSPSKPAEIWAALFH 57 Query: 62 DIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGNNRQAVTDYIR 121 + ++G L RHF E L RL+ AQ++ + RQLL QL + L GNNRQAV+D+IR Sbjct: 58 HLQIAGGGELRVRHFLPTEQLLQGRLVTAQETLAGRQLLQQLTDLLPQGNNRQAVSDFIR 117 Query: 122 HNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQPQQREATDRPLLPAEHNALKQLVTKLAA 181 FG T L+QL QL+ +L LLQ G++ IP PQQ TDR LLPAEH AL QL+T+LAA Sbjct: 118 SQFGHTVLSQLDAGQLRQVLHLLQNGQLDIPAPQQAAMTDRTLLPAEHQALSQLITRLAA 177 Query: 182 ATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWLQARQTLSQQNTPTLESLQMTLKQ 241 TGE ++W+S+ + G+K G+ IPA+ F L +LQ+ TLSQQ PTL +L LK Sbjct: 178 LTGETPTELWESLHRMMGLKSGDPIPARHFPLLSQFLQSHLTLSQQGHPTLATLTAVLKH 237 Query: 242 PLDASELAALSAYIQQKYGLSAQSS 266 P+ E A+ Y +Q + +Q+ Sbjct: 238 PVHGEEQQAVEQYCRQHFAADSQTP 262 >UniRef50_C6DA78 Flagella assembly protein n=4 Tax=Pectobacterium RepID=C6DA78_PECCP Length = 414 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 128/415 (30%), Positives = 198/415 (47%), Gaps = 88/415 (21%) Query: 2 IQPISGPP---PGQPP-------GQGDNLPSGTGNQPLSSQQRTSLESLMTKVTSLTQQQ 51 +QP+SGP PG+ P + S G++PL+ QRT+LE+L+ KV +LT + Sbjct: 1 MQPVSGPGAPLPGERPVTSTTTSSASNATGSANGDRPLTLAQRTTLENLVLKVAALTTSK 60 Query: 52 RAELWAGIRHDIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGN 111 AE+W ++ +GL+ +S L SRH+ AE L RL AQ + +QLL +L + L GN Sbjct: 61 AAEVWTTVKQGLGLAENSELQSRHYQPAEQILQTRLTQAQDNGGRQQLLQRLTDMLSQGN 120 Query: 112 NRQAVTDYIRHNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQPQQ----------REATD 161 NRQAV+D+I+ FG T L+ L+ QL+ ++TLLQ G+ IPQ + D Sbjct: 121 NRQAVSDFIQQRFGSTTLSALNKTQLQQVVTLLQNGQ--IPQSTAPANATQTAQAANSPD 178 Query: 162 RPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWLQAR 221 RPL PAE L QLVT+LA TGE ++ +++ + + G+ IP K L +LQA+ Sbjct: 179 RPLNPAEQRGLNQLVTRLATMTGEQPARVLSNLMMMQNLNAGDTIPLKHLPLLTQFLQAQ 238 Query: 222 QTLSQ------------QNTPT-------------------------------------- 231 L Q Q TPT Sbjct: 239 VELQQTQTLLRATSPASQGTPTNAGAAGAAPESLTANTANTTNANLSSTANLSSQPLSAQ 298 Query: 232 -------LESLQMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRV 284 L LQ L+QP+ A E L Y Q ++ + Q+ L+ Q D+L L+ +R+ Sbjct: 299 NALLSPNLAPLQALLQQPMTAQEQHLLMDYTQNRFNIGLQTPLTPMQVSDLLTFLFTQRI 358 Query: 285 ---KGIDPRVMQPLLNP-FPPMMDTL----QNMATRPALWILL-VAIILMLVWLV 330 + D LL+P F P++ +L Q++ +P +++ + L+W++ Sbjct: 359 QRAQETDWTATSQLLHPLFNPLIASLPLSWQSLFHKPMFLVIVSTCVAAFLLWVL 413 >UniRef50_C6C9T9 Flagella biosynthesis regulator protein n=3 Tax=Dickeya RepID=C6C9T9_DICDC Length = 413 Score = 289 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 125/373 (33%), Positives = 190/373 (50%), Gaps = 65/373 (17%) Query: 22 SGTGNQPLSSQQRTSLESLMTKVTSLTQQQRAELWAGIRHDIGLSGDSPLLSRHFPAAEH 81 S TG+ PL+S QRT LE L+ ++T + + AE+WAG+R+ +G+SG++ LLS F AA Sbjct: 41 STTGDTPLTSAQRTVLEKLVNQITGQSGAKSAEVWAGLRYSLGVSGNTDLLSSQFTAATQ 100 Query: 82 NLAQRLLAAQKSHSARQLLAQLGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSPEQLKTIL 141 L RL AQ + RQLL Q+ L+ GNNRQAV+++IR FG T L L+P QL+ ++ Sbjct: 101 ILQARLTTAQDAQQTRQLLQQVTNLLQQGNNRQAVSNFIRQQFGHTTLGSLTPSQLQQVV 160 Query: 142 TLLQEGKM------------VIPQPQQ--------------------------------- 156 +LQ G + +PQP Sbjct: 161 NVLQSGTLSPNTAVATPQNPTLPQPGMPTPSGGQPAAAQPSPPTSSGPLATSSLTPTQLA 220 Query: 157 ------------REATDRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGE 204 T RPL AEHN+L QLV +L A +GE S Q+W++MLE+ + G+ Sbjct: 221 ATANLLGSSPGIALLTGRPLSAAEHNSLNQLVARLVALSGETSAQVWRTMLEMQKLDVGQ 280 Query: 205 LIPAKLFNHLVTWLQARQTLSQQNTPTLESLQMTL-KQPLDASELAALSAYIQQKYGLSA 263 IPA+ F L +LQ + L QQ+ + +T KQP D E + L +++ + + Sbjct: 281 PIPAQHFQTLSQYLQTQTALLQQHATSTLLSLLTTLKQPADHQEQSLLQDFVRTSFNAAP 340 Query: 264 QSSLSSAQAEDILNQLYQRRVKGIDPR---VMQPLLNP----FPPMMDTLQNMATRPALW 316 Q+ L+ QA +++ LY+RR++ + +QP++NP PP L N AL Sbjct: 341 QTPLTPTQASEVVTFLYRRRLQQLQESSAVPVQPIINPLILALPPDWRPLFNRPLGLALI 400 Query: 317 ILLVAIILMLVWL 329 + LVA++L+ + L Sbjct: 401 LTLVAVLLLWILL 413 Score = 54.8 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 58/132 (43%) Query: 148 KMVIPQPQQREATDRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGELIP 207 + D PL A+ L++LV ++ +G S ++W + GV + Sbjct: 32 TAALTTSDASTTGDTPLTSAQRTVLEKLVNQITGQSGAKSAEVWAGLRYSLGVSGNTDLL 91 Query: 208 AKLFNHLVTWLQARQTLSQQNTPTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQSSL 267 + F LQAR T +Q T + LQ + A+S +I+Q++G + SL Sbjct: 92 SSQFTAATQILQARLTTAQDAQQTRQLLQQVTNLLQQGNNRQAVSNFIRQQFGHTTLGSL 151 Query: 268 SSAQAEDILNQL 279 + +Q + ++N L Sbjct: 152 TPSQLQQVVNVL 163 >UniRef50_D0KLB4 Flagella assembly protein n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KLB4_PECWW Length = 421 Score = 265 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 121/420 (28%), Positives = 191/420 (45%), Gaps = 91/420 (21%) Query: 2 IQPISGPPPGQP--------------PGQGDNLPSGTGNQPLSSQQRTSLESLMTKVTSL 47 +QP+SGP P + S +G++PL+ QRT+LE+L+ KV +L Sbjct: 1 MQPVSGPGAPLPGERVVAPTTTSSTSSASSNAAGSSSGDRPLTLAQRTTLENLVLKVAAL 60 Query: 48 TQQQRAELWAGIRHDIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQLGEYL 107 T + AE+W ++ +GL+ ++ L SRH+ AE L RL AQ + + LL +L E L Sbjct: 61 TTSKAAEVWTTVKQGLGLAENNELQSRHYQPAEQILQTRLTQAQDNSGRQPLLQRLTEML 120 Query: 108 RLGNNRQAVTDYIRHNFGQTPLNQLSPEQLKTILTLLQEGKM-------VIPQPQQRE-A 159 GNNRQAV+D+IR FG T L+ LS QL+ ++TLLQ G++ PQ Q + Sbjct: 121 PQGNNRQAVSDFIRQQFGSTTLSALSKTQLQQVVTLLQNGQIPQSTAPASTPQAAQAPNS 180 Query: 160 TDRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWLQ 219 +RPL P E +L QLVT+LA TGE ++ +++ + + G+ IP K L +LQ Sbjct: 181 PERPLSPVEQRSLNQLVTRLATMTGEQPARVLSNLMTMQNLTPGDTIPFKHLPLLTQFLQ 240 Query: 220 ARQT----------------------------------------------------LSQQ 227 A+ S Q Sbjct: 241 AQVELQQTQTLLRTTLTPQGTPTNTGTAGAPQEPPTANTTNTANATNTNSASTATLSSSQ 300 Query: 228 NTPTLESLQMTLKQPLDA--------SELAALSAYIQQKYGLSAQSSLSSAQAEDILNQL 279 PT +L PL A E L Y Q ++ +S Q+ L+ Q D+L L Sbjct: 301 PLPTQNTLLSPNLAPLQALLQQPMTAQEQQLLIDYTQNRFNISLQTPLTPMQVSDLLAFL 360 Query: 280 YQRRV---KGIDPRVMQPLLNP-FPPMMDTL----QNMATRPALWILL-VAIILMLVWLV 330 + +R+ + D LL+P F P++ +L Q++ +P +++ + L+W++ Sbjct: 361 FTQRIQRSQETDWTTTSQLLHPLFNPLIASLPLSWQSLFHKPMFLVIVSTCVAAFLLWVL 420 >UniRef50_B3Y0N4 Predicted protein n=14 Tax=Escherichia coli RepID=B3Y0N4_ECO11 Length = 216 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 9/157 (5%) Query: 17 GDNLPSGTGN--QPLSSQQRTSLESLMTKVTSLTQQQRAELWAGIRHDIGLSGDSPLLSR 74 +PS + +PL QR L SL+ + + + +W + +IG++G + Sbjct: 34 NIAIPSNNDDDDRPLLKAQRKELNSLVAAIAEASNTEAFIIWQKVHAEIGVAGIDDMTVN 93 Query: 75 HFPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGNN---RQAVTDYIRHNFGQTPLNQ 131 + AE L +L K H A + L L LR + RQ + Y NFG LN Sbjct: 94 QYKTAESFL-HAMLERCKDHDACKALVSL--LLRNSEDCGLRQKLLRYCHINFGTGRLND 150 Query: 132 LSPEQLKTILTLLQEGKMVIPQPQQREATDRPLLPAE 168 L+ QL++ L+ L++ + + + L +E Sbjct: 151 LTRSQLQSALSWLEQ-QSASSHTESSTLPEVRLRASE 186 Score = 62.9 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 55/147 (37%) Query: 148 KMVIPQPQQREATDRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGELIP 207 + I P + DRPLL A+ L LV +A A+ + IWQ + GV + + Sbjct: 32 TVNIAIPSNNDDDDRPLLKAQRKELNSLVAAIAEASNTEAFIIWQKVHAEIGVAGIDDMT 91 Query: 208 AKLFNHLVTWLQARQTLSQQNTPTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQSSL 267 + ++L A + + + + L+ D L Y +G + L Sbjct: 92 VNQYKTAESFLHAMLERCKDHDACKALVSLLLRNSEDCGLRQKLLRYCHINFGTGRLNDL 151 Query: 268 SSAQAEDILNQLYQRRVKGIDPRVMQP 294 + +Q + L+ L Q+ P Sbjct: 152 TRSQLQSALSWLEQQSASSHTESSTLP 178 >UniRef50_UPI000190BBCC flagella biosynthesis regulator n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. 404ty RepID=UPI000190BBCC Length = 118 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 40/108 (37%), Positives = 69/108 (63%), Gaps = 5/108 (4%) Query: 228 NTPTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRVK-- 285 + PTL +LQ LKQPL+ EL A+ Y Q Y + Q+ L++AQ +D+LN ++ RRV+ Sbjct: 1 HAPTLHTLQAALKQPLEPDELTAIKEYAQHTYQIQPQTVLTTAQVQDLLNHIFLRRVERE 60 Query: 286 --GIDPRVMQPLLNPFPPMMDTLQNMATRPALWIL-LVAIILMLVWLV 330 ++P +QP+ PF PM++T++N++ RP L + L+ ++ + W + Sbjct: 61 ADELEPLSIQPIYRPFAPMIETVKNLSARPGLLFIALIIVLALFGWFL 108 >UniRef50_B1JN55 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=B1JN55_YERPY Length = 212 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 31/146 (21%), Positives = 62/146 (42%) Query: 20 LPSGTGNQPLSSQQRTSLESLMTKVTSLTQQQRAELWAGIRHDIGLSGDSPLLSRHFPAA 79 + N+PL QR L L+ ++ ++ +W + +IG+S + H+ AA Sbjct: 36 PTTEIDNRPLVPAQRKQLNQLVKEIIETGHEEGFSIWQKVHAEIGVSSIEEMTVSHYQAA 95 Query: 80 EHNLAQRLLAAQKSHSARQLLAQLGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSPEQLKT 139 L + +++ L+ L + + + RQ + Y FG L +L+ QL+ Sbjct: 96 YSYLQALRDRYCEKEASKSLIHLLLKNTQQESERQQLIRYCHIQFGSGRLTELTRLQLQQ 155 Query: 140 ILTLLQEGKMVIPQPQQREATDRPLL 165 L+ L E + + P +++ L Sbjct: 156 ALSWLDEKQYLETPPSTVTTSEKRLS 181 Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 37/177 (20%), Positives = 67/177 (37%), Gaps = 13/177 (7%) Query: 157 REATDRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVT 216 E +RPL+PA+ L QLV ++ E IWQ + GV E + + + Sbjct: 38 TEIDNRPLVPAQRKQLNQLVKEIIETGHEEGFSIWQKVHAEIGVSSIEEMTVSHYQAAYS 97 Query: 217 WLQARQTLSQQNTPTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDIL 276 +LQA + + + + + LK SE L Y ++G + L+ Q + L Sbjct: 98 YLQALRDRYCEKEASKSLIHLLLKNTQQESERQQLIRYCHIQFGSGRLTELTRLQLQQAL 157 Query: 277 NQLYQRRVKGIDPRVM---------QPLLNPFPPMMDTLQNMATRPALWILLVAIIL 324 + L +++ P + Q L +P + I L+ + + Sbjct: 158 SWLDEKQYLETPPSTVTTSEKRLSWQQLFRHYPIFSGGVFA----SGFLIALLIVAI 210 >UniRef50_C5BGX9 Putative uncharacterized protein n=1 Tax=Edwardsiella ictaluri 93-146 RepID=C5BGX9_EDWI9 Length = 197 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 1/128 (0%) Query: 27 QPLSSQQRTSLESLMTKVTSLTQQQRAELWAGIRHDIGLSGDSPLLSRHFPAAEHNLAQR 86 +PL QR L L+ ++T +W + ++G++G L H+PAA L Sbjct: 41 RPLVPAQRMRLNQLVQQITDCGDDMGMTIWQKVYAELGVNGLDELTVSHYPAARGYLHIL 100 Query: 87 LLAAQKSHSARQLLAQLGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSPEQLKTILTLLQE 146 L A+ + + L+ L R+ + Y FG L++LS QL+ L L+E Sbjct: 101 LKQARAKSADKALIRLLQTGATTSIRRRQLQRYCHIQFGSGYLHELSRSQLRQALAWLEE 160 Query: 147 -GKMVIPQ 153 G IP Sbjct: 161 RGGDDIPA 168 Score = 47.1 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 62/185 (33%), Gaps = 23/185 (12%) Query: 148 KMVIPQPQQREATDRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGELIP 207 + PQ RPL+PA+ L QLV ++ + IWQ + GV + + Sbjct: 32 TLSAPQSDL-----RPLVPAQRMRLNQLVQQITDCGDDMGMTIWQKVYAELGVNGLDELT 86 Query: 208 AKLFNHLVTWLQARQTLSQQNTPTLESLQMTLKQ--PLDASELAALSAYIQQKYGLSAQS 265 + +L L Q + + + L Q + L Y ++G Sbjct: 87 VSHYPAARGYL--HILLKQARAKSADKALIRLLQTGATTSIRRRQLQRYCHIQFGSGYLH 144 Query: 266 SLSSAQAEDILNQLYQRRVKGIDPRVMQPLLNPFPPMMDTLQNMATRPAL--WILLVAII 323 LS +Q L L +R I P + P P L + + ++ Sbjct: 145 ELSRSQLRQALAWLEERGGDDI-PALTSPFW-----------PRYRAPLLCSVLFMAGVL 192 Query: 324 LMLVW 328 L L W Sbjct: 193 LGLWW 197 >UniRef50_UPI0001911B32 flagella biosynthesis regulator n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. M223 RepID=UPI0001911B32 Length = 83 Score = 97.9 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 83/83 (100%), Positives = 83/83 (100%) Query: 226 QQNTPTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRVK 285 QQNTPTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRVK Sbjct: 1 QQNTPTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRVK 60 Query: 286 GIDPRVMQPLLNPFPPMMDTLQN 308 GIDPRVMQPLLNPFPPMMDTLQN Sbjct: 61 GIDPRVMQPLLNPFPPMMDTLQN 83 >UniRef50_B2NA81 Putative uncharacterized protein n=1 Tax=Escherichia coli 53638 RepID=B2NA81_ECOLX Length = 224 Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 59/131 (45%), Gaps = 1/131 (0%) Query: 17 GDNLPSGTGN-QPLSSQQRTSLESLMTKVTSLTQQQRAELWAGIRHDIGLSGDSPLLSRH 75 N+P+ G +PL QR S+ L+ V + +W + ++G++G S + Sbjct: 34 NINVPAKAGEERPLVKSQRISIRKLVNAVAESENTETVPVWVKLHAELGVNGVSEISGSQ 93 Query: 76 FPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSPE 135 + A L L +++ + + L+A++ + R + ++ + T L++LS Sbjct: 94 YKVALKFLNDLLAESKEKKTKKVLVAKILNKTEAQDLRHKLNEHCSIYYKNTRLDELSHN 153 Query: 136 QLKTILTLLQE 146 QL I +++ Sbjct: 154 QLVEIYEWIEK 164 >UniRef50_Q7WDD7 Putative uncharacterized protein n=1 Tax=Bordetella bronchiseptica RepID=Q7WDD7_BORBR Length = 203 Score = 77.1 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 2/136 (1%) Query: 29 LSSQQRTSLESLMTKVTSLTQQQRAELWAGIRHDIGLSGDSPLLSRHFPAAEHNLAQRLL 88 L QR +L L+ +T + ++W + +G+ L F AE L L Sbjct: 36 LVPAQRRALNDLVRTITEEFDDEPWDVWRIVHAKLGVKSVQDLTRMQFELAEQVLKNHLN 95 Query: 89 AAQKSHSARQLLAQLGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSPEQLKTILTLLQEGK 148 ++ R L++++ +NR V + NFG + L+ EQL+ L + Sbjct: 96 GRREESLLRGLVSKVLRISAEKDNRTEVELFCSRNFGTSQFKLLTREQLQATLGFAHD-- 153 Query: 149 MVIPQPQQREATDRPL 164 P+ PL Sbjct: 154 WAPPKSAHDHGPTAPL 169 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 61/172 (35%), Gaps = 8/172 (4%) Query: 153 QPQQREATDRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGELIPAKLFN 212 +P++ + L+PA+ AL LV + + +W+ + GVK + + F Sbjct: 25 KPEEELSPGVDLVPAQRRALNDLVRTITEEFDDEPWDVWRIVHAKLGVKSVQDLTRMQFE 84 Query: 213 HLVTWLQARQTLSQQNTPTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQA 272 L+ ++ + + L+ + + + + +G S L+ Q Sbjct: 85 LAEQVLKNHLNGRREESLLRGLVSKVLRISAEKDNRTEVELFCSRNFGTSQFKLLTREQL 144 Query: 273 EDILNQLYQ----RRVKGIDPRVMQP-LLNPFPPMMDTLQNMATRPALWILL 319 + L + + P P + P PP ++ T P L + L Sbjct: 145 QATLGFAHDWAPPKSAHDHGPTAPLPSTMRPCPP---PIERRFTWPWLAVTL 193 >UniRef50_B7NJL0 Putative uncharacterized protein n=2 Tax=Escherichia coli RepID=B7NJL0_ECO7I Length = 328 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 4/125 (3%) Query: 16 QGDNLPSGTGNQPLSSQQRTSLESLMTKVTSLTQQQRAELWAGIRHDIGLSGDSPLLSRH 75 D LPS QP+S Q+ L LM ++ L + +R ELW I + + + + Sbjct: 26 SADILPSA--QQPISLLQKRDLHRLMDELVDLGESKR-ELWMTIHTKLNTKTVNEMTAAD 82 Query: 76 FPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSPE 135 + A L R ++ LL L R Y +FG T L L E Sbjct: 83 YHGAVEILQ-RYAQQIQNMKDCNLLVSKIMALTDPGYRLDRDRYCLKHFGTTHLKGLDKE 141 Query: 136 QLKTI 140 QL+ + Sbjct: 142 QLQAV 146 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q7CQ37 Flagellar regulator flk n=114 Tax=Enterobacteria... 347 4e-94 UniRef50_A4TM69 Flagellar assembly regulatory protein, Flk n=36 ... 315 1e-84 UniRef50_D2T7J6 Protein div n=4 Tax=Enterobacteriaceae RepID=D2T... 309 8e-83 UniRef50_Q2NSH8 Cell division protein n=1 Tax=Sodalis glossinidi... 266 1e-69 UniRef50_D0KLB4 Flagella assembly protein n=1 Tax=Pectobacterium... 261 3e-68 UniRef50_C6C9T9 Flagella biosynthesis regulator protein n=3 Tax=... 259 1e-67 UniRef50_C6DA78 Flagella assembly protein n=4 Tax=Pectobacterium... 258 1e-67 UniRef50_B1JN55 Putative uncharacterized protein n=2 Tax=Enterob... 179 1e-43 UniRef50_Q7WDD7 Putative uncharacterized protein n=1 Tax=Bordete... 174 3e-42 UniRef50_B3Y0N4 Predicted protein n=14 Tax=Escherichia coli RepI... 174 4e-42 UniRef50_C5BGX9 Putative uncharacterized protein n=1 Tax=Edwards... 160 6e-38 UniRef50_B2NA81 Putative uncharacterized protein n=1 Tax=Escheri... 153 9e-36 UniRef50_B7NJL0 Putative uncharacterized protein n=2 Tax=Escheri... 140 7e-32 UniRef50_UPI000190BBCC flagella biosynthesis regulator n=1 Tax=S... 107 4e-22 UniRef50_UPI0001911B32 flagella biosynthesis regulator n=1 Tax=S... 82 2e-14 Sequences not found previously or not previously below threshold: UniRef50_D2L6R7 Phage regulatory protein, Rha family n=1 Tax=Des... 54 9e-06 UniRef50_A4IRH4 Putative uncharacterized protein n=3 Tax=Geobaci... 44 0.009 UniRef50_UPI00016A6A34 hypothetical protein BthaT_32753 n=1 Tax=... 43 0.014 >UniRef50_Q7CQ37 Flagellar regulator flk n=114 Tax=Enterobacteriaceae RepID=FLK_SALTY Length = 333 Score = 347 bits (889), Expect = 4e-94, Method: Composition-based stats. Identities = 201/333 (60%), Positives = 255/333 (76%), Gaps = 5/333 (1%) Query: 2 IQPISGPPPGQPPGQGDNLPSGTGNQPLSSQQRTSLESLMTKVTSLTQQQRAELWAGIRH 61 + PISG P QPPG+G N S QPLS QQRT LE L+T++ SLTQQQ AE+WAG++H Sbjct: 1 MHPISGA-PAQPPGEGRNPLSAASEQPLSMQQRTVLERLITRLISLTQQQSAEVWAGMKH 59 Query: 62 DIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGNNRQAVTDYIR 121 D+G+ D+PLLSRHFPAAE NL QRL AQ++H+ RQ+L+QL E L +GNNRQAV+D+IR Sbjct: 60 DLGIKNDAPLLSRHFPAAEQNLTQRLGVAQQNHANRQVLSQLTELLGVGNNRQAVSDFIR 119 Query: 122 HNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQPQQREATDRPLLPAEHNALKQLVTKLAA 181 +GQT L+QL+P+QLK +LTLLQ+G++ IPQPQQR ATDRPLLPAEHN L QLVTKLAA Sbjct: 120 QQYGQTALSQLTPDQLKNVLTLLQQGQLSIPQPQQRPATDRPLLPAEHNTLNQLVTKLAA 179 Query: 182 ATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWLQARQTLSQQNTPTLESLQMTLKQ 241 ATGE +K IWQSMLELSGVK GELIPAK F HL TWLQARQTLS Q+ PTL +LQ LKQ Sbjct: 180 ATGESNKLIWQSMLELSGVKSGELIPAKQFTHLATWLQARQTLSLQHAPTLHTLQAALKQ 239 Query: 242 PLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRVK----GIDPRVMQPLLN 297 PL+ EL A+ Y Q Y + Q+ L++AQ +D+LN ++ RRV+ ++P +QP+ Sbjct: 240 PLEPDELTAIKEYAQHTYQIQPQTVLTTAQVQDLLNHIFLRRVEREADELEPLSIQPIYR 299 Query: 298 PFPPMMDTLQNMATRPALWILLVAIILMLVWLV 330 PF PM++T++N++ RP L + + I+L L WLV Sbjct: 300 PFAPMIETVKNLSARPGLLFIALIIVLALFWLV 332 >UniRef50_A4TM69 Flagellar assembly regulatory protein, Flk n=36 Tax=Enterobacteriaceae RepID=A4TM69_YERPP Length = 345 Score = 315 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 138/343 (40%), Positives = 208/343 (60%), Gaps = 14/343 (4%) Query: 2 IQPISGPPPGQPPGQGDNLP-----SGTGNQPLSSQQRTSLESLMTKVTSLTQQQRAELW 56 +QP++GP + S +Q L+ QRT+LE L+ ++ +L+ + AE+W Sbjct: 1 MQPLNGPGVPIGNDRHITPTKLTAQSTVEDQALTPAQRTTLEKLIVRIMALSPVKSAEIW 60 Query: 57 AGIRHDIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGNNRQAV 116 AG+RH++ L LL+RHF AE L RL AQ++H+++QL QL L GNNRQAV Sbjct: 61 AGLRHNLSLDATGDLLARHFQPAEQLLQTRLSQAQENHASQQLRQQLTALLPQGNNRQAV 120 Query: 117 TDYIRHNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQPQQREATDRPLLPAEHNALKQLV 176 +D+IR FG T L+QLS +L+ +L LLQ G + IPQPQ TDRPLLPAEH ++ LV Sbjct: 121 SDFIRQQFGHTVLSQLSHTELQQVLVLLQSGTLNIPQPQLTTLTDRPLLPAEHQNIQSLV 180 Query: 177 TKLAAATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWLQARQTLSQQNTPTLESLQ 236 KL+AATGE +IWQ++ ++ GVK + +PA+ F L +LQ + LSQQ PTL +LQ Sbjct: 181 AKLSAATGEQPTKIWQTLFDMVGVKHHDPLPARHFQLLSQFLQTKVALSQQTAPTLVNLQ 240 Query: 237 MTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRVKGIDP------- 289 LKQP DA E L+ Y Q ++ S + L+ AQ DI+N L+ R++ + Sbjct: 241 TALKQPADAQEQQLLADYSQNRFQASPTTPLTQAQLNDIINILFAARLEKANAAQYLDEE 300 Query: 290 -RVMQPLLNPFPPMM-DTLQNMATRPALWILLVAIILMLVWLV 330 + +QPL+NPF + ++LQ + +P+L ++ + I++ + + Sbjct: 301 HKPLQPLINPFIASLPESLQPLLQKPSLVVVALIIVIAFLLAI 343 >UniRef50_D2T7J6 Protein div n=4 Tax=Enterobacteriaceae RepID=D2T7J6_ERWPY Length = 345 Score = 309 bits (792), Expect = 8e-83, Method: Composition-based stats. Identities = 152/338 (44%), Positives = 210/338 (62%), Gaps = 20/338 (5%) Query: 2 IQPISGPPPGQPPGQ-GDNLPSGT-----GNQPLSSQQRTSLESLMTKVTSLTQQQRAEL 55 +QP+SGP P + + PS T G++PL+ QRT+LE L+ K+ SL+ + AEL Sbjct: 1 MQPLSGPGTPLPGERPAIDAPSATARPGIGDRPLTPAQRTTLERLIVKIMSLSSLKSAEL 60 Query: 56 WAGIRHDIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGNNRQA 115 WAG+RH++G+ D+ L +RHFP AE L RL Q SH+ RQLL QL + L GNNRQA Sbjct: 61 WAGLRHEVGVKNDAGLQARHFPQAEQFLNIRLAQVQDSHATRQLLQQLSDLLPTGNNRQA 120 Query: 116 VTDYIRHNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQPQQREATDRPLLPAEHNALKQL 175 V+D+IR FG T L+ L+P+QL+ LT+LQ G+M IPQPQQ ATDR LLPAEH+AL Q Sbjct: 121 VSDFIRQQFGHTVLSSLNPDQLRQALTMLQNGQMAIPQPQQGHATDRTLLPAEHHALNQQ 180 Query: 176 VTKLAAATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWLQARQTLSQQNTPTLESL 235 +++LAAATGE ++W S+L++ + G+ IP++LF L +LQA QT +Q T TL L Sbjct: 181 ISRLAAATGEQPVKLWASLLKVVNLHSGDPIPSRLFPLLNQYLQASQTSTQHATSTLSQL 240 Query: 236 QMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRVKGIDPRVM--- 292 TLKQPLD E L Y QQ++ + Q+ LS+ Q +D+LN L+ RR + + + Sbjct: 241 TATLKQPLDTGEQRLLEDYSQQRFNATPQTVLSATQIQDLLNLLFSRRAERLLEHPIADS 300 Query: 293 --------QPLLNPFPPMMDTLQNMATRPALWILLVAI 322 P+ PP+ LQ +A+RP L I Sbjct: 301 ERHPKPIAMPVWGALPPV---LQPLASRPVLTAFAALI 335 >UniRef50_Q2NSH8 Cell division protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NSH8_SODGM Length = 309 Score = 266 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 116/298 (38%), Positives = 169/298 (56%), Gaps = 7/298 (2%) Query: 2 IQPISGPPPGQPPGQGDNLPSGTGNQPLSSQQRTSLESLMTKVTSLTQQQRAELWAGIRH 61 +QP++GP L++ QR +LE L+T++ +L+ + AE+WA + H Sbjct: 1 MQPVTGPGTPPRGQTPPPPGPDQP---LTTAQRMTLERLITRIMALSPSKPAEIWAALFH 57 Query: 62 DIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGNNRQAVTDYIR 121 + ++G L RHF E L RL+ AQ++ + RQLL QL + L GNNRQAV+D+IR Sbjct: 58 HLQIAGGGELRVRHFLPTEQLLQGRLVTAQETLAGRQLLQQLTDLLPQGNNRQAVSDFIR 117 Query: 122 HNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQPQQREATDRPLLPAEHNALKQLVTKLAA 181 FG T L+QL QL+ +L LLQ G++ IP PQQ TDR LLPAEH AL QL+T+LAA Sbjct: 118 SQFGHTVLSQLDAGQLRQVLHLLQNGQLDIPAPQQAAMTDRTLLPAEHQALSQLITRLAA 177 Query: 182 ATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWLQARQTLSQQNTPTLESLQMTLKQ 241 TGE ++W+S+ + G+K G+ IPA+ F L +LQ+ TLSQQ PTL +L LK Sbjct: 178 LTGETPTELWESLHRMMGLKSGDPIPARHFPLLSQFLQSHLTLSQQGHPTLATLTAVLKH 237 Query: 242 PLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRVKGIDPRVMQPLLNPF 299 P+ E A+ Y +Q + +Q+ + + DPR ++ +P Sbjct: 238 PVHGEEQQAVEQYCRQHFAADSQTP----DVRLLQPLTHTLIAIEHDPRPVRSARSPL 291 >UniRef50_D0KLB4 Flagella assembly protein n=1 Tax=Pectobacterium wasabiae WPP163 RepID=D0KLB4_PECWW Length = 421 Score = 261 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 123/420 (29%), Positives = 196/420 (46%), Gaps = 91/420 (21%) Query: 2 IQPISGPPPGQPPGQ--------------GDNLPSGTGNQPLSSQQRTSLESLMTKVTSL 47 +QP+SGP P + + S +G++PL+ QRT+LE+L+ KV +L Sbjct: 1 MQPVSGPGAPLPGERVVAPTTTSSTSSASSNAAGSSSGDRPLTLAQRTTLENLVLKVAAL 60 Query: 48 TQQQRAELWAGIRHDIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQLGEYL 107 T + AE+W ++ +GL+ ++ L SRH+ AE L RL AQ + + LL +L E L Sbjct: 61 TTSKAAEVWTTVKQGLGLAENNELQSRHYQPAEQILQTRLTQAQDNSGRQPLLQRLTEML 120 Query: 108 RLGNNRQAVTDYIRHNFGQTPLNQLSPEQLKTILTLLQEGKM-------VIPQPQQRE-A 159 GNNRQAV+D+IR FG T L+ LS QL+ ++TLLQ G++ PQ Q + Sbjct: 121 PQGNNRQAVSDFIRQQFGSTTLSALSKTQLQQVVTLLQNGQIPQSTAPASTPQAAQAPNS 180 Query: 160 TDRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWLQ 219 +RPL P E +L QLVT+LA TGE ++ +++ + + G+ IP K L +LQ Sbjct: 181 PERPLSPVEQRSLNQLVTRLATMTGEQPARVLSNLMTMQNLTPGDTIPFKHLPLLTQFLQ 240 Query: 220 ARQT----------------------------------------------------LSQQ 227 A+ S Q Sbjct: 241 AQVELQQTQTLLRTTLTPQGTPTNTGTAGAPQEPPTANTTNTANATNTNSASTATLSSSQ 300 Query: 228 NTPTLESL--------QMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQL 279 PT +L Q L+QP+ A E L Y Q ++ +S Q+ L+ Q D+L L Sbjct: 301 PLPTQNTLLSPNLAPLQALLQQPMTAQEQQLLIDYTQNRFNISLQTPLTPMQVSDLLAFL 360 Query: 280 YQRRV---KGIDPRVMQPLLNP-FPPMMDTL----QNMATRPALWILL-VAIILMLVWLV 330 + +R+ + D LL+P F P++ +L Q++ +P +++ + L+W++ Sbjct: 361 FTQRIQRSQETDWTTTSQLLHPLFNPLIASLPLSWQSLFHKPMFLVIVSTCVAAFLLWVL 420 >UniRef50_C6C9T9 Flagella biosynthesis regulator protein n=3 Tax=Dickeya RepID=C6C9T9_DICDC Length = 413 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 130/373 (34%), Positives = 192/373 (51%), Gaps = 65/373 (17%) Query: 22 SGTGNQPLSSQQRTSLESLMTKVTSLTQQQRAELWAGIRHDIGLSGDSPLLSRHFPAAEH 81 S TG+ PL+S QRT LE L+ ++T + + AE+WAG+R+ +G+SG++ LLS F AA Sbjct: 41 STTGDTPLTSAQRTVLEKLVNQITGQSGAKSAEVWAGLRYSLGVSGNTDLLSSQFTAATQ 100 Query: 82 NLAQRLLAAQKSHSARQLLAQLGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSPEQLKTIL 141 L RL AQ + RQLL Q+ L+ GNNRQAV+++IR FG T L L+P QL+ ++ Sbjct: 101 ILQARLTTAQDAQQTRQLLQQVTNLLQQGNNRQAVSNFIRQQFGHTTLGSLTPSQLQQVV 160 Query: 142 TLLQEGKMVI------------PQPQQ--------------------------------- 156 +LQ G + PQP Sbjct: 161 NVLQSGTLSPNTAVATPQNPTLPQPGMPTPSGGQPAAAQPSPPTSSGPLATSSLTPTQLA 220 Query: 157 ------------REATDRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGE 204 T RPL AEHN+L QLV +L A +GE S Q+W++MLE+ + G+ Sbjct: 221 ATANLLGSSPGIALLTGRPLSAAEHNSLNQLVARLVALSGETSAQVWRTMLEMQKLDVGQ 280 Query: 205 LIPAKLFNHLVTWLQARQTLSQQNT-PTLESLQMTLKQPLDASELAALSAYIQQKYGLSA 263 IPA+ F L +LQ + L QQ+ TL SL TLKQP D E + L +++ + + Sbjct: 281 PIPAQHFQTLSQYLQTQTALLQQHATSTLLSLLTTLKQPADHQEQSLLQDFVRTSFNAAP 340 Query: 264 QSSLSSAQAEDILNQLYQRRVKGIDPR---VMQPLLNP----FPPMMDTLQNMATRPALW 316 Q+ L+ QA +++ LY+RR++ + +QP++NP PP L N AL Sbjct: 341 QTPLTPTQASEVVTFLYRRRLQQLQESSAVPVQPIINPLILALPPDWRPLFNRPLGLALI 400 Query: 317 ILLVAIILMLVWL 329 + LVA++L+ + L Sbjct: 401 LTLVAVLLLWILL 413 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 3/171 (1%) Query: 147 GKMVIPQPQQREATDRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGELI 206 + D PL A+ L++LV ++ +G S ++W + GV + Sbjct: 31 KTAALTTSDASTTGDTPLTSAQRTVLEKLVNQITGQSGAKSAEVWAGLRYSLGVSGNTDL 90 Query: 207 PAKLFNHLVTWLQARQTLSQQNTPTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQSS 266 + F LQAR T +Q T + LQ + A+S +I+Q++G + S Sbjct: 91 LSSQFTAATQILQARLTTAQDAQQTRQLLQQVTNLLQQGNNRQAVSNFIRQQFGHTTLGS 150 Query: 267 LSSAQAEDILNQLYQRRVKGIDPRVMQP---LLNPFPPMMDTLQNMATRPA 314 L+ +Q + ++N L + L P P Q A +P+ Sbjct: 151 LTPSQLQQVVNVLQSGTLSPNTAVATPQNPTLPQPGMPTPSGGQPAAAQPS 201 >UniRef50_C6DA78 Flagella assembly protein n=4 Tax=Pectobacterium RepID=C6DA78_PECCP Length = 414 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 119/415 (28%), Positives = 187/415 (45%), Gaps = 88/415 (21%) Query: 2 IQPISGPPPGQPPGQ----------GDNLPSGTGNQPLSSQQRTSLESLMTKVTSLTQQQ 51 +QP+SGP P + + S G++PL+ QRT+LE+L+ KV +LT + Sbjct: 1 MQPVSGPGAPLPGERPVTSTTTSSASNATGSANGDRPLTLAQRTTLENLVLKVAALTTSK 60 Query: 52 RAELWAGIRHDIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGN 111 AE+W ++ +GL+ +S L SRH+ AE L RL AQ + +QLL +L + L GN Sbjct: 61 AAEVWTTVKQGLGLAENSELQSRHYQPAEQILQTRLTQAQDNGGRQQLLQRLTDMLSQGN 120 Query: 112 NRQAVTDYIRHNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQPQ----------QREATD 161 NRQAV+D+I+ FG T L+ L+ QL+ ++TLLQ G+ IPQ + D Sbjct: 121 NRQAVSDFIQQRFGSTTLSALNKTQLQQVVTLLQNGQ--IPQSTAPANATQTAQAANSPD 178 Query: 162 RPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWLQAR 221 RPL PAE L QLVT+LA TGE ++ +++ + + G+ IP K L +LQA+ Sbjct: 179 RPLNPAEQRGLNQLVTRLATMTGEQPARVLSNLMMMQNLNAGDTIPLKHLPLLTQFLQAQ 238 Query: 222 QTLSQQNTPTLES----------------------------------------------- 234 L Q T + Sbjct: 239 VELQQTQTLLRATSPASQGTPTNAGAAGAAPESLTANTANTTNANLSSTANLSSQPLSAQ 298 Query: 235 --LQMTLKQPLDASELA--------ALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQ--- 281 L PL A L Y Q ++ + Q+ L+ Q D+L L+ Sbjct: 299 NALLSPNLAPLQALLQQPMTAQEQHLLMDYTQNRFNIGLQTPLTPMQVSDLLTFLFTQRI 358 Query: 282 RRVKGIDPRVMQPLLNP-FPPMMDTL----QNMATRPALWILL-VAIILMLVWLV 330 +R + D LL+P F P++ +L Q++ +P +++ + L+W++ Sbjct: 359 QRAQETDWTATSQLLHPLFNPLIASLPLSWQSLFHKPMFLVIVSTCVAAFLLWVL 413 >UniRef50_B1JN55 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=B1JN55_YERPY Length = 212 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 70/186 (37%), Gaps = 16/186 (8%) Query: 149 MVIPQPQQREATDRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGELIPA 208 +VIP + RPL+PA+ L QLV ++ E IWQ + GV E + Sbjct: 33 IVIPTTEIDN---RPLVPAQRKQLNQLVKEIIETGHEEGFSIWQKVHAEIGVSSIEEMTV 89 Query: 209 KLFNHLVTWLQARQTLSQQNTPTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQSSLS 268 + ++LQA + + + + + LK SE L Y ++G + L+ Sbjct: 90 SHYQAAYSYLQALRDRYCEKEASKSLIHLLLKNTQQESERQQLIRYCHIQFGSGRLTELT 149 Query: 269 SAQAEDILNQLYQRRVKGIDPRVM---------QPLLNPFPPMMDTLQNMATRPALWILL 319 Q + L+ L +++ P + Q L +P + I L Sbjct: 150 RLQLQQALSWLDEKQYLETPPSTVTTSEKRLSWQQLFRHYPIFSGGVFA----SGFLIAL 205 Query: 320 VAIILM 325 + + + Sbjct: 206 LIVAIG 211 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 62/148 (41%) Query: 18 DNLPSGTGNQPLSSQQRTSLESLMTKVTSLTQQQRAELWAGIRHDIGLSGDSPLLSRHFP 77 + N+PL QR L L+ ++ ++ +W + +IG+S + H+ Sbjct: 34 VIPTTEIDNRPLVPAQRKQLNQLVKEIIETGHEEGFSIWQKVHAEIGVSSIEEMTVSHYQ 93 Query: 78 AAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSPEQL 137 AA L + +++ L+ L + + + RQ + Y FG L +L+ QL Sbjct: 94 AAYSYLQALRDRYCEKEASKSLIHLLLKNTQQESERQQLIRYCHIQFGSGRLTELTRLQL 153 Query: 138 KTILTLLQEGKMVIPQPQQREATDRPLL 165 + L+ L E + + P +++ L Sbjct: 154 QQALSWLDEKQYLETPPSTVTTSEKRLS 181 >UniRef50_Q7WDD7 Putative uncharacterized protein n=1 Tax=Bordetella bronchiseptica RepID=Q7WDD7_BORBR Length = 203 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 61/172 (35%), Gaps = 8/172 (4%) Query: 153 QPQQREATDRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGELIPAKLFN 212 +P++ + L+PA+ AL LV + + +W+ + GVK + + F Sbjct: 25 KPEEELSPGVDLVPAQRRALNDLVRTITEEFDDEPWDVWRIVHAKLGVKSVQDLTRMQFE 84 Query: 213 HLVTWLQARQTLSQQNTPTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQA 272 L+ ++ + + L+ + + + + +G S L+ Q Sbjct: 85 LAEQVLKNHLNGRREESLLRGLVSKVLRISAEKDNRTEVELFCSRNFGTSQFKLLTREQL 144 Query: 273 EDILNQLYQ----RRVKGIDPRVMQP-LLNPFPPMMDTLQNMATRPALWILL 319 + L + + P P + P PP ++ T P L + L Sbjct: 145 QATLGFAHDWAPPKSAHDHGPTAPLPSTMRPCPP---PIERRFTWPWLAVTL 193 Score = 153 bits (386), Expect = 8e-36, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 2/136 (1%) Query: 29 LSSQQRTSLESLMTKVTSLTQQQRAELWAGIRHDIGLSGDSPLLSRHFPAAEHNLAQRLL 88 L QR +L L+ +T + ++W + +G+ L F AE L L Sbjct: 36 LVPAQRRALNDLVRTITEEFDDEPWDVWRIVHAKLGVKSVQDLTRMQFELAEQVLKNHLN 95 Query: 89 AAQKSHSARQLLAQLGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSPEQLKTILTLLQEGK 148 ++ R L++++ +NR V + NFG + L+ EQL+ L + Sbjct: 96 GRREESLLRGLVSKVLRISAEKDNRTEVELFCSRNFGTSQFKLLTREQLQATLGFAHD-- 153 Query: 149 MVIPQPQQREATDRPL 164 P+ PL Sbjct: 154 WAPPKSAHDHGPTAPL 169 >UniRef50_B3Y0N4 Predicted protein n=14 Tax=Escherichia coli RepID=B3Y0N4_ECO11 Length = 216 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 56/150 (37%) Query: 148 KMVIPQPQQREATDRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGELIP 207 + I P + DRPLL A+ L LV +A A+ + IWQ + GV + + Sbjct: 32 TVNIAIPSNNDDDDRPLLKAQRKELNSLVAAIAEASNTEAFIIWQKVHAEIGVAGIDDMT 91 Query: 208 AKLFNHLVTWLQARQTLSQQNTPTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQSSL 267 + ++L A + + + + L+ D L Y +G + L Sbjct: 92 VNQYKTAESFLHAMLERCKDHDACKALVSLLLRNSEDCGLRQKLLRYCHINFGTGRLNDL 151 Query: 268 SSAQAEDILNQLYQRRVKGIDPRVMQPLLN 297 + +Q + L+ L Q+ P + Sbjct: 152 TRSQLQSALSWLEQQSASSHTESSTLPEVR 181 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 3/158 (1%) Query: 17 GDNLPSGTGN--QPLSSQQRTSLESLMTKVTSLTQQQRAELWAGIRHDIGLSGDSPLLSR 74 +PS + +PL QR L SL+ + + + +W + +IG++G + Sbjct: 34 NIAIPSNNDDDDRPLLKAQRKELNSLVAAIAEASNTEAFIIWQKVHAEIGVAGIDDMTVN 93 Query: 75 HFPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSP 134 + AE L L + + + L++ L RQ + Y NFG LN L+ Sbjct: 94 QYKTAESFLHAMLERCKDHDACKALVSLLLRNSEDCGLRQKLLRYCHINFGTGRLNDLTR 153 Query: 135 EQLKTILTLLQEGKMVIPQPQQREATDRPLLPAEHNAL 172 QL++ L+ L++ + + + L +E L Sbjct: 154 SQLQSALSWLEQ-QSASSHTESSTLPEVRLRASELIRL 190 >UniRef50_C5BGX9 Putative uncharacterized protein n=1 Tax=Edwardsiella ictaluri 93-146 RepID=C5BGX9_EDWI9 Length = 197 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 62/187 (33%), Gaps = 23/187 (12%) Query: 146 EGKMVIPQPQQREATDRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGEL 205 + PQ RPL+PA+ L QLV ++ + IWQ + GV + Sbjct: 30 NITLSAPQSDL-----RPLVPAQRMRLNQLVQQITDCGDDMGMTIWQKVYAELGVNGLDE 84 Query: 206 IPAKLFNHLVTWLQARQTLSQQNTPTLESLQMTLKQP--LDASELAALSAYIQQKYGLSA 263 + + +L L Q + + + L Q + L Y ++G Sbjct: 85 LTVSHYPAARGYL--HILLKQARAKSADKALIRLLQTGATTSIRRRQLQRYCHIQFGSGY 142 Query: 264 QSSLSSAQAEDILNQLYQRRVKGIDPRVMQPLLNPFPPMMDTLQNMATRPAL--WILLVA 321 LS +Q L L +R I P + P P L + + Sbjct: 143 LHELSRSQLRQALAWLEERGGDDI-PALTSPFW-----------PRYRAPLLCSVLFMAG 190 Query: 322 IILMLVW 328 ++L L W Sbjct: 191 VLLGLWW 197 Score = 156 bits (395), Expect = 7e-37, Method: Composition-based stats. Identities = 36/139 (25%), Positives = 59/139 (42%), Gaps = 2/139 (1%) Query: 17 GDNLPSGTGN-QPLSSQQRTSLESLMTKVTSLTQQQRAELWAGIRHDIGLSGDSPLLSRH 75 L + + +PL QR L L+ ++T +W + ++G++G L H Sbjct: 30 NITLSAPQSDLRPLVPAQRMRLNQLVQQITDCGDDMGMTIWQKVYAELGVNGLDELTVSH 89 Query: 76 FPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSPE 135 +PAA L L A+ + + L+ L R+ + Y FG L++LS Sbjct: 90 YPAARGYLHILLKQARAKSADKALIRLLQTGATTSIRRRQLQRYCHIQFGSGYLHELSRS 149 Query: 136 QLKTILTLLQE-GKMVIPQ 153 QL+ L L+E G IP Sbjct: 150 QLRQALAWLEERGGDDIPA 168 >UniRef50_B2NA81 Putative uncharacterized protein n=1 Tax=Escherichia coli 53638 RepID=B2NA81_ECOLX Length = 224 Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 59/131 (45%), Gaps = 1/131 (0%) Query: 17 GDNLPSGTGN-QPLSSQQRTSLESLMTKVTSLTQQQRAELWAGIRHDIGLSGDSPLLSRH 75 N+P+ G +PL QR S+ L+ V + +W + ++G++G S + Sbjct: 34 NINVPAKAGEERPLVKSQRISIRKLVNAVAESENTETVPVWVKLHAELGVNGVSEISGSQ 93 Query: 76 FPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSPE 135 + A L L +++ + + L+A++ + R + ++ + T L++LS Sbjct: 94 YKVALKFLNDLLAESKEKKTKKVLVAKILNKTEAQDLRHKLNEHCSIYYKNTRLDELSHN 153 Query: 136 QLKTILTLLQE 146 QL I +++ Sbjct: 154 QLVEIYEWIEK 164 Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 52/143 (36%), Gaps = 1/143 (0%) Query: 139 TILTLLQEGKMVIPQPQQREATDRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELS 198 I +L + I P + +RPL+ ++ ++++LV +A + + +W + Sbjct: 23 QIESLDSSQTININVPAKA-GEERPLVKSQRISIRKLVNAVAESENTETVPVWVKLHAEL 81 Query: 199 GVKDGELIPAKLFNHLVTWLQARQTLSQQNTPTLESLQMTLKQPLDASELAALSAYIQQK 258 GV I + + +L S++ + L + L+ + Sbjct: 82 GVNGVSEISGSQYKVALKFLNDLLAESKEKKTKKVLVAKILNKTEAQDLRHKLNEHCSIY 141 Query: 259 YGLSAQSSLSSAQAEDILNQLYQ 281 Y + LS Q +I + + Sbjct: 142 YKNTRLDELSHNQLVEIYEWIEK 164 >UniRef50_B7NJL0 Putative uncharacterized protein n=2 Tax=Escherichia coli RepID=B7NJL0_ECO7I Length = 328 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 54/163 (33%), Gaps = 16/163 (9%) Query: 16 QGDNLPSGTGNQPLSSQQRTSLESLMTKVTSLTQQQRAELWAGIRHDIGLSGDSPLLSRH 75 D LPS QP+S Q+ L LM ++ L + +R ELW I + + + + Sbjct: 26 SADILPSA--QQPISLLQKRDLHRLMDELVDLGESKR-ELWMTIHTKLNTKTVNEMTAAD 82 Query: 76 FPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSPE 135 + A L R ++ LL L R Y +FG T L L E Sbjct: 83 YHGAVEILQ-RYAQQIQNMKDCNLLVSKIMALTDPGYRLDRDRYCLKHFGTTHLKGLDKE 141 Query: 136 QLKTILTLL--------QEGKMVIP----QPQQREATDRPLLP 166 QL+ + + + P R P Sbjct: 142 QLQAVFGYFDDLLNIRDESKTLSPPSESGAKSVATVPTRSRKP 184 Score = 63.6 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 24/156 (15%), Positives = 52/156 (33%), Gaps = 2/156 (1%) Query: 158 EATDRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTW 217 + +P+ + L +L+ +L GE +++W ++ K + A ++ V Sbjct: 31 PSAQQPISLLQKRDLHRLMDELVDL-GESKRELWMTIHTKLNTKTVNEMTAADYHGAVEI 89 Query: 218 LQARQTLSQQNTPTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILN 277 LQ R QN L + D Y + +G + L Q + + Sbjct: 90 LQ-RYAQQIQNMKDCNLLVSKIMALTDPGYRLDRDRYCLKHFGTTHLKGLDKEQLQAVFG 148 Query: 278 QLYQRRVKGIDPRVMQPLLNPFPPMMDTLQNMATRP 313 + + + P + T+ + +P Sbjct: 149 YFDDLLNIRDESKTLSPPSESGAKSVATVPTRSRKP 184 >UniRef50_UPI000190BBCC flagella biosynthesis regulator n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. 404ty RepID=UPI000190BBCC Length = 118 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 40/108 (37%), Positives = 69/108 (63%), Gaps = 5/108 (4%) Query: 228 NTPTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRVK-- 285 + PTL +LQ LKQPL+ EL A+ Y Q Y + Q+ L++AQ +D+LN ++ RRV+ Sbjct: 1 HAPTLHTLQAALKQPLEPDELTAIKEYAQHTYQIQPQTVLTTAQVQDLLNHIFLRRVERE 60 Query: 286 --GIDPRVMQPLLNPFPPMMDTLQNMATRPALWIL-LVAIILMLVWLV 330 ++P +QP+ PF PM++T++N++ RP L + L+ ++ + W + Sbjct: 61 ADELEPLSIQPIYRPFAPMIETVKNLSARPGLLFIALIIVLALFGWFL 108 >UniRef50_UPI0001911B32 flagella biosynthesis regulator n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. M223 RepID=UPI0001911B32 Length = 83 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 83/83 (100%), Positives = 83/83 (100%) Query: 226 QQNTPTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRVK 285 QQNTPTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRVK Sbjct: 1 QQNTPTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDILNQLYQRRVK 60 Query: 286 GIDPRVMQPLLNPFPPMMDTLQN 308 GIDPRVMQPLLNPFPPMMDTLQN Sbjct: 61 GIDPRVMQPLLNPFPPMMDTLQN 83 >UniRef50_D2L6R7 Phage regulatory protein, Rha family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L6R7_9DELT Length = 333 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 51/178 (28%), Gaps = 22/178 (12%) Query: 150 VIPQPQQREATDRPLLPAEHNALKQLVTKLAAATG-EPSKQI--WQSMLELSGVKDGELI 206 + P A R E N L LV KL G I W+ E+ GVK + I Sbjct: 138 ALAAPVASPAIPRRTTAQERNPLAVLVNKLMGEQGPTRPAYIAFWRRFHEVFGVKSVDEI 197 Query: 207 PAKLFNHLVTWLQARQTLSQQNTPTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQSS 266 + ++ A + P L Y GL Sbjct: 198 TVDQLPRALAFVDALIAFREGVEPKALPAGRP---------RNNLGDYCALYGGLPP--- 245 Query: 267 LSSAQAEDIL------NQLYQRRVKGIDPRVMQPLLNPFPPMMDTLQNMATRPALWIL 318 + D+L ++ + R++ I +P + T + A P + Sbjct: 246 -TPQYWMDLLTEYAKASEAFGRKLDEIKAEATKPFRVNRKSGISTYFDEAMSPMYSLF 302 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 12/119 (10%) Query: 10 PGQPPGQGDNLPSGTGNQPLSSQQRTSLESLMTKVT-SLTQQQRAEL--WAGIRHDIGLS 66 GQP + S + ++Q+R L L+ K+ + A + W G+ Sbjct: 133 AGQPKALAAPVASPAIPRRTTAQERNPLAVLVNKLMGEQGPTRPAYIAFWRRFHEVFGVK 192 Query: 67 GDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGNNRQAVTDYIRHNFG 125 + P A + + + L G R + DY G Sbjct: 193 SVDEITVDQLPRALAFVDALIAFREGVEPK---------ALPAGRPRNNLGDYCALYGG 242 >UniRef50_A4IRH4 Putative uncharacterized protein n=3 Tax=Geobacillus RepID=A4IRH4_GEOTN Length = 327 Score = 43.6 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 41/250 (16%), Positives = 85/250 (34%), Gaps = 35/250 (14%) Query: 75 HFPAAEHNLAQRLLAAQKSHSARQLLAQLGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSP 134 + AE LA L + +LL L N + +IR + L Sbjct: 65 DYDEAEWRLAALLDEQPNNG---ELLQMYVALLLQTNRYREAETFIRSALRRQTLPVSLR 121 Query: 135 EQLKTILTLLQEGKMVIPQPQQREATDRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSM 194 EQL+ +L ++ RPL PAE +K+L+ S+ I + M Sbjct: 122 EQLRQLLRFSEK------------MNVRPLPPAEWKRVKRLL---------ESEDIAEQM 160 Query: 195 LELSGVKDGELIPAKLFNHLVTWLQARQTLSQQNTPTLESLQMTLKQPLDASELAALSAY 254 + ++ ++ P + L +L + +P +++ + L E + + Sbjct: 161 QLIKQLEKEDIAPV--LSLLSQYL-----SEPKKSPIAKTMLLRLLTVKQIDETVTVEKF 213 Query: 255 IQ-QKYGLSAQSSLSSAQAEDILNQLYQRRVKGIDPR---VMQPLLNPFPPMMDTLQNMA 310 Q SA + + + L +L ++R+ P + + ++ Sbjct: 214 GQRIDVVPSALNEQAETEFASTLLRLLEQRLTAESPSLYETAAEIWLRYAYILYPFPPEP 273 Query: 311 TRPALWILLV 320 +W+ + Sbjct: 274 ADADVWLAAL 283 >UniRef50_UPI00016A6A34 hypothetical protein BthaT_32753 n=1 Tax=Burkholderia thailandensis TXDOH RepID=UPI00016A6A34 Length = 100 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 5/84 (5%) Query: 11 GQPPGQGDNLPSGTGNQP-----LSSQQRTSLESLMTKVTSLTQQQRAELWAGIRHDIGL 65 G P + + G + +++ Q+ + L+ ++ T+++ E+W + G Sbjct: 4 GTPITNSNVVNVQFGERERLVEYVTTHQKRMIAQLVERIVEATKEEPLEVWRKVLARAGA 63 Query: 66 SGDSPLLSRHFPAAEHNLAQRLLA 89 +L + E L L Sbjct: 64 RKAKLILKSAYIDVEEYLVDWLGR 87 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.303 0.127 0.318 Lambda K H 0.267 0.0393 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,610,730,232 Number of Sequences: 3077464 Number of extensions: 55087352 Number of successful extensions: 382413 Number of sequences better than 1.0e-01: 242 Number of HSP's better than 0.1 without gapping: 63 Number of HSP's successfully gapped in prelim test: 677 Number of HSP's that attempted gapping in prelim test: 369451 Number of HSP's gapped (non-prelim): 6041 length of query: 331 length of database: 1,040,396,356 effective HSP length: 129 effective length of query: 202 effective length of database: 643,403,500 effective search space: 129967507000 effective search space used: 129967507000 T: 11 A: 40 X1: 16 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 93 (40.5 bits)