Phyre 2 Results for P0ADE2

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Email | l.a.kelley@imperial.ac.uk
Description | P0ADE2
Date | Thu Jan 5 11:20:46 GMT 2012
Unique Job ID | 1caa85e17e3ac013

Summary |

Top model
Image coloured by rainbow N → C terminus
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Model (left) based on template c2jroA_
Top template information
PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of so0334 from shewanella oneidensis. northeast2 structural genomics target sor75
Confidence and coverage
Confidence: | 100.0% | Coverage: | 99%
67 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | K | I | F | Q | R | Y | N | P | L | Q | V | A | K | Y | V | K | I | L | F | R | G | R | L | Y | I | K | D | V | G | A | F | E | F | D | K | G | K | I | L | I | P | K | V | K | D | K | L | H | L | S | V | M | S | E | V | N | R | Q | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Disorder |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Sequence |  | M | R | L | Q | T | E | M | A
Secondary structure |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2jroA_ |

### PDB 2jro chain A

Region: 1 - 67
Aligned: 67
Modelled: 67
Confidence: 100.0%
Identity: 27%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of so0334 from shewanella oneidensis. northeast2 structural genomics target sor75

Phyre2
2 |
| d1t0hb_ |

### PDB 1t0h chain B

Region: 15 - 63
Aligned: 45
Modelled: 49
Confidence: 36.1%
Identity: 29%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nucleotide and nucleoside kinases

Phyre2
3 |
| d1njha_ |

### PDB 1njh chain A

Region: 22 - 41
Aligned: 20
Modelled: 19
Confidence: 24.0%
Identity: 20%
Fold: Hypothetical protein YojF
Superfamily: Hypothetical protein YojF
Family: Hypothetical protein YojF

Phyre2
4 |
| c2ow7A_ |

### PDB 2ow7 chain A

Region: 30 - 56
Aligned: 27
Modelled: 27
Confidence: 17.6%
Identity: 22%
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-mannosidase 2;
PDBTitle: golgi alpha-mannosidase ii complex with (1r,6s,7r,8s)-1-2 thioniabicyclo[4.3.0]nonan-7,8-diol chloride

Phyre2
5 |
| c1htyA_ |

### PDB 1hty chain A

Region: 30 - 56
Aligned: 27
Modelled: 27
Confidence: 16.0%
Identity: 22%
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-mannosidase ii;
PDBTitle: golgi alpha-mannosidase ii

Phyre2
6 |
| c1o7dA_ |

### PDB 1o7d chain A

Region: 30 - 66
Aligned: 37
Modelled: 37
Confidence: 13.6%
Identity: 14%
PDB header:hydrolase
Chain: A: PDB Molecule:lysosomal alpha-mannosidase;
PDBTitle: the structure of the bovine lysosomal a-mannosidase2 suggests a novel mechanism for low ph activation

Phyre2
7 |
| d3bvua3 |

### PDB 3bvu chain A domain 3

Region: 30 - 66
Aligned: 37
Modelled: 37
Confidence: 13.5%
Identity: 19%
Fold: 7-stranded beta/alpha barrel
Superfamily: Glycoside hydrolase/deacetylase
Family: alpha-mannosidase

Phyre2
8 |
| d1ve2a1 |

### PDB 1ve2 chain A domain 1

Region: 21 - 31
Aligned: 11
Modelled: 11
Confidence: 12.5%
Identity: 36%
Fold: Tetrapyrrole methylase
Superfamily: Tetrapyrrole methylase
Family: Tetrapyrrole methylase

Phyre2
9 |
| c2b1kA_ |

### PDB 2b1k chain A

Region: 36 - 68
Aligned: 33
Modelled: 33
Confidence: 12.5%
Identity: 18%
PDB header:oxidoreductase
Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbe;
PDBTitle: crystal structure of e. coli ccmg protein

Phyre2
10 |
| c3i0yC_ |

### PDB 3i0y chain C

Region: 23 - 40
Aligned: 18
Modelled: 18
Confidence: 11.6%
Identity: 17%
PDB header:isomerase
Chain: C: PDB Molecule:putative polyketide cyclase;
PDBTitle: crystal structure of a putative polyketide cyclase (xcc0381) from2 xanthomonas campestris pv. campestris at 1.50 a resolution

Phyre2
11 |
| c3jx9B_ |

### PDB 3jx9 chain B

Region: 22 - 34
Aligned: 13
Modelled: 13
Confidence: 11.2%
Identity: 38%
PDB header:isomerase
Chain: B: PDB Molecule:putative phosphoheptose isomerase;
PDBTitle: crystal structure of putative phosphoheptose isomerase2 (yp_001815198.1) from exiguobacterium sp. 255-15 at 1.95 a resolution

Phyre2
12 |
| d1v3ya_ |

### PDB 1v3y chain A

Region: 36 - 67
Aligned: 32
Modelled: 32
Confidence: 10.9%
Identity: 13%
Fold: Peptide deformylase
Superfamily: Peptide deformylase
Family: Peptide deformylase

Phyre2
13 |
| d1o12a1 |

### PDB 1o12 chain A domain 1

Region: 30 - 40
Aligned: 11
Modelled: 11
Confidence: 10.7%
Identity: 45%
Fold: Composite domain of metallo-dependent hydrolases
Superfamily: Composite domain of metallo-dependent hydrolases
Family: N-acetylglucosamine-6-phosphate deacetylase, NagA

Phyre2
14 |
| c1cbfA_ |

### PDB 1cbf chain A

Region: 21 - 31
Aligned: 11
Modelled: 11
Confidence: 10.4%
Identity: 36%
PDB header:methyltransferase
Chain: A: PDB Molecule:cobalt-precorrin-4 transmethylase;
PDBTitle: the x-ray structure of a cobalamin biosynthetic enzyme, cobalt2 precorrin-4 methyltransferase, cbif

Phyre2
15 |
| d1cbfa_ |

### PDB 1cbf chain A

Region: 21 - 31
Aligned: 11
Modelled: 11
Confidence: 10.4%
Identity: 36%
Fold: Tetrapyrrole methylase
Superfamily: Tetrapyrrole methylase
Family: Tetrapyrrole methylase

Phyre2
16 |
| d1oh4a_ |

### PDB 1oh4 chain A

Region: 20 - 38
Aligned: 19
Modelled: 19
Confidence: 10.2%
Identity: 21%
Fold: Galactose-binding domain-like
Superfamily: Galactose-binding domain-like
Family: Family 27 carbohydrate binding module, CBM27

Phyre2
17 |
| c2e0kA_ |

### PDB 2e0k chain A

Region: 21 - 31
Aligned: 11
Modelled: 11
Confidence: 10.2%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:precorrin-2 c20-methyltransferase;
PDBTitle: crystal structure of cbil, a methyltransferase involved in anaerobic2 vitamin b12 biosynthesis

Phyre2
18 |
| d1x4ta1 |

### PDB 1x4t chain A domain 1

Region: 53 - 66
Aligned: 14
Modelled: 14
Confidence: 10.0%
Identity: 21%
Fold: Long alpha-hairpin
Superfamily: ISY1 domain-like
Family: ISY1 N-terminal domain-like

Phyre2
19 |
| d2gexa1 |

### PDB 2gex chain A domain 1

Region: 23 - 40
Aligned: 18
Modelled: 18
Confidence: 9.9%
Identity: 17%
Fold: Cystatin-like
Superfamily: NTF2-like
Family: SnoaL-like polyketide cyclase

Phyre2
20 |
| c2qbuA_ |

### PDB 2qbu chain A

Region: 21 - 31
Aligned: 11
Modelled: 11
Confidence: 9.8%
Identity: 36%
PDB header:transferase
Chain: A: PDB Molecule:precorrin-2 methyltransferase;
PDBTitle: crystal structure of methanothermobacter thermautotrophicus cbil

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2jroA_ |
|  | 100.0 | 27 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of so0334 from shewanella oneidensis. northeast2 structural genomics target sor75
2 | d1t0hb_ |
|  | 36.1 | 29 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
3 | d1njha_ |
|  | 24.0 | 20 | Fold:Hypothetical protein YojF Superfamily:Hypothetical protein YojF Family:Hypothetical protein YojF
4 | c2ow7A_ |
|  | 17.6 | 22 | PDB header:hydrolase Chain: A: PDB Molecule:alpha-mannosidase 2; PDBTitle: golgi alpha-mannosidase ii complex with (1r,6s,7r,8s)-1-2 thioniabicyclo[4.3.0]nonan-7,8-diol chloride
5 | c1htyA_ |
|  | 16.0 | 22 | PDB header:hydrolase Chain: A: PDB Molecule:alpha-mannosidase ii; PDBTitle: golgi alpha-mannosidase ii
6 | c1o7dA_ |
|  | 13.6 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:lysosomal alpha-mannosidase; PDBTitle: the structure of the bovine lysosomal a-mannosidase2 suggests a novel mechanism for low ph activation
7 | d3bvua3 |
|  | 13.5 | 19 | Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:alpha-mannosidase
8 | d1ve2a1 |
|  | 12.5 | 36 | Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase
9 | c2b1kA_ |
|  | 12.5 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:thiol:disulfide interchange protein dsbe; PDBTitle: crystal structure of e. coli ccmg protein
10 | c3i0yC_ |
|  | 11.6 | 17 | PDB header:isomerase Chain: C: PDB Molecule:putative polyketide cyclase; PDBTitle: crystal structure of a putative polyketide cyclase (xcc0381) from2 xanthomonas campestris pv. campestris at 1.50 a resolution
11 | c3jx9B_ |
|  | 11.2 | 38 | PDB header:isomerase Chain: B: PDB Molecule:putative phosphoheptose isomerase; PDBTitle: crystal structure of putative phosphoheptose isomerase2 (yp_001815198.1) from exiguobacterium sp. 255-15 at 1.95 a resolution
12 | d1v3ya_ |
|  | 10.9 | 13 | Fold:Peptide deformylase Superfamily:Peptide deformylase Family:Peptide deformylase
13 | d1o12a1 |
|  | 10.7 | 45 | Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:N-acetylglucosamine-6-phosphate deacetylase, NagA
14 | c1cbfA_ |
|  | 10.4 | 36 | PDB header:methyltransferase Chain: A: PDB Molecule:cobalt-precorrin-4 transmethylase; PDBTitle: the x-ray structure of a cobalamin biosynthetic enzyme, cobalt2 precorrin-4 methyltransferase, cbif
15 | d1cbfa_ |
|  | 10.4 | 36 | Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase
16 | d1oh4a_ |
|  | 10.2 | 21 | Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Family 27 carbohydrate binding module, CBM27
17 | c2e0kA_ |
|  | 10.2 | 18 | PDB header:transferase Chain: A: PDB Molecule:precorrin-2 c20-methyltransferase; PDBTitle: crystal structure of cbil, a methyltransferase involved in anaerobic2 vitamin b12 biosynthesis
18 | d1x4ta1 |
|  | 10.0 | 21 | Fold:Long alpha-hairpin Superfamily:ISY1 domain-like Family:ISY1 N-terminal domain-like
19 | d2gexa1 |
|  | 9.9 | 17 | Fold:Cystatin-like Superfamily:NTF2-like Family:SnoaL-like polyketide cyclase
20 | c2qbuA_ |
|  | 9.8 | 36 | PDB header:transferase Chain: A: PDB Molecule:precorrin-2 methyltransferase; PDBTitle: crystal structure of methanothermobacter thermautotrophicus cbil
21 | d2geya1 |
| not modelled | 9.2 | 28 | Fold:Cystatin-like Superfamily:NTF2-like Family:SnoaL-like polyketide cyclase
22 | d1zyba1 |
| not modelled | 9.2 | 35 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CAP C-terminal domain-like
23 | d2k54a1 |
| not modelled | 8.8 | 21 | Fold:Cystatin-like Superfamily:NTF2-like Family:Atu0742-like
24 | c1g2cN_ |
| not modelled | 8.7 | 30 | PDB header:viral protein Chain: N: PDB Molecule:fusion protein (f); PDBTitle: human respiratory syncytial virus fusion protein core
25 | d1pjqa2 |
| not modelled | 8.6 | 20 | Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase
26 | c3hh1D_ |
| not modelled | 8.4 | 27 | PDB header:transferase Chain: D: PDB Molecule:tetrapyrrole methylase family protein; PDBTitle: the structure of a tetrapyrrole methylase family protein domain from2 chlorobium tepidum tls
27 | c3ff2A_ |
| not modelled | 8.4 | 20 | PDB header:unknown function Chain: A: PDB Molecule:uncharacterized cystatin fold protein (yp_497570.1) from PDBTitle: crystal structure of an uncharacterized cystatin fold protein2 (saro_2299) from novosphingobium aromaticivorans dsm at 1.90 a3 resolution
28 | d1s4da_ |
| not modelled | 7.9 | 18 | Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase
29 | c3f7xA_ |
| not modelled | 7.7 | 22 | PDB header:unknown function Chain: A: PDB Molecule:putative polyketide cyclase; PDBTitle: crystal structure of a putative polyketide cyclase (pp0894) from2 pseudomonas putida kt2440 at 1.24 a resolution
30 | c3k0zB_ |
| not modelled | 7.5 | 16 | PDB header:lyase Chain: B: PDB Molecule:putative polyketide cyclase; PDBTitle: crystal structure of putative polyketide cyclase (np_977253.1) from2 bacillus cereus atcc 10987 at 1.91 a resolution
31 | c3f14A_ |
| not modelled | 7.5 | 11 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized ntf2-like protein; PDBTitle: crystal structure of ntf2-like protein of unknown function2 (yp_680363.1) from cytophaga hutchinsonii atcc 33406 at 1.45 a3 resolution
32 | c3f8hA_ |
| not modelled | 7.5 | 17 | PDB header:unknown function Chain: A: PDB Molecule:putative polyketide cyclase; PDBTitle: crystal structure of a putative polyketide cyclase (tm1040_3560) from2 silicibacter sp. tm1040 at 2.00 a resolution
33 | c3myuB_ |
| not modelled | 7.2 | 18 | PDB header:vib binding protein Chain: B: PDB Molecule:high affinity transport system protein p37; PDBTitle: mycoplasma genitalium mg289
34 | d1va0a1 |
| not modelled | 7.1 | 40 | Fold:Tetrapyrrole methylase Superfamily:Tetrapyrrole methylase Family:Tetrapyrrole methylase
35 | c2hw2A_ |
| not modelled | 7.1 | 55 | PDB header:transferase Chain: A: PDB Molecule:rifampin adp-ribosyl transferase; PDBTitle: crystal structure of rifampin adp-ribosyl transferase in2 complex with rifampin
36 | d1rk8b_ |
| not modelled | 6.8 | 35 | Fold:Mago nashi protein Superfamily:Mago nashi protein Family:Mago nashi protein
37 | c1t3jA_ |
| not modelled | 6.8 | 14 | PDB header:membrane protein Chain: A: PDB Molecule:mitofusin 1; PDBTitle: mitofusin domain hr2 v686m/i708m mutant
38 | c2zvbA_ |
| not modelled | 6.6 | 30 | PDB header:transferase Chain: A: PDB Molecule:precorrin-3 c17-methyltransferase; PDBTitle: crystal structure of tt0207 from thermus thermophilus hb8
39 | c1no1C_ |
| not modelled | 6.6 | 36 | PDB header:replication Chain: C: PDB Molecule:replisome organizer; PDBTitle: structure of truncated variant of b.subtilis spp1 phage g39p helicase2 loader/inhibitor protein
40 | d1no1a_ |
| not modelled | 6.6 | 36 | Fold:Replisome organizer (g39p helicase loader/inhibitor protein) Superfamily:Replisome organizer (g39p helicase loader/inhibitor protein) Family:Replisome organizer (g39p helicase loader/inhibitor protein)
41 | d1t3la2 |
| not modelled | 6.5 | 18 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
42 | c1r48A_ |
| not modelled | 6.4 | 11 | PDB header:transport protein Chain: A: PDB Molecule:proline/betaine transporter; PDBTitle: solution structure of the c-terminal cytoplasmic domain2 residues 468-497 of escherichia coli protein prop
43 | d2ih2a2 |
| not modelled | 6.3 | 33 | Fold:DNA methylase specificity domain Superfamily:DNA methylase specificity domain Family:TaqI C-terminal domain-like
44 | d2ba0a2 |
| not modelled | 6.0 | 20 | Fold:Barrel-sandwich hybrid Superfamily:Ribosomal L27 protein-like Family:ECR1 N-terminal domain-like
45 | c2l3bA_ |
| not modelled | 6.0 | 24 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein found in conjugate transposon; PDBTitle: solution nmr structure of the bt_0084 lipoprotein from bacteroides2 thetaiotaomicron, northeast structural genomics consortium target3 btr376
46 | c2qg8A_ |
| not modelled | 5.8 | 33 | PDB header:transferase Chain: A: PDB Molecule:acyl carrier protein synthase py06285; PDBTitle: plasmodium yoelii acyl carrier protein synthase py06285 with adp bound
47 | d1w6sb_ |
| not modelled | 5.7 | 43 | Fold:Non-globular all-alpha subunits of globular proteins Superfamily:Methanol dehydrogenase subunit Family:Methanol dehydrogenase subunit
48 | c1w25B_ |
| not modelled | 5.6 | 16 | PDB header:signaling protein Chain: B: PDB Molecule:stalked-cell differentiation controlling protein; PDBTitle: response regulator pled in complex with c-digmp
49 | c3ot2B_ |
| not modelled | 5.6 | 24 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative nuclease belonging to duf8202 (ava_3926) from anabaena variabilis atcc 29413 at 1.96 a resolution
50 | c3ot2A_ |
| not modelled | 5.6 | 24 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative nuclease belonging to duf8202 (ava_3926) from anabaena variabilis atcc 29413 at 1.96 a resolution
51 | d2ad6b1 |
| not modelled | 5.6 | 35 | Fold:Non-globular all-alpha subunits of globular proteins Superfamily:Methanol dehydrogenase subunit Family:Methanol dehydrogenase subunit
52 | c3dluA_ |
| not modelled | 5.5 | 15 | PDB header:rna binding protein Chain: A: PDB Molecule:signal recognition particle 19 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.
53 | c2rfpA_ |
| not modelled | 5.5 | 24 | PDB header:hydrolase Chain: A: PDB Molecule:putative ntp pyrophosphohydrolase; PDBTitle: crystal structure of putative ntp pyrophosphohydrolase2 (yp_001813558.1) from exiguobacterium sibiricum 255-15 at 1.74 a3 resolution
54 | c1tuhA_ |
| not modelled | 5.4 | 32 | PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein egc068; PDBTitle: structure of bal32a from a soil-derived mobile gene cassette
55 | d1tuha_ |
| not modelled | 5.4 | 32 | Fold:Cystatin-like Superfamily:NTF2-like Family:Hypothetical protein egc068 from a soil-derived mobile gene cassette
56 | c2kkmA_ |
| not modelled | 5.4 | 27 | PDB header:translation Chain: A: PDB Molecule:translation machinery-associated protein 16; PDBTitle: solution nmr structure of yeast protein yor252w [residues2 38-178]: northeast structural genomics consortium target3 yt654
57 | c3kkgA_ |
| not modelled | 5.4 | 22 | PDB header:lyase Chain: A: PDB Molecule:putative snoal-like polyketide cyclase; PDBTitle: crystal structure of putative snoal-like polyketide cyclase2 (yp_509242.1) from jannaschia sp. ccs1 at 1.40 a resolution
58 | c3e79A_ |
| not modelled | 5.2 | 36 | PDB header:tpp binding protein Chain: A: PDB Molecule:high affinity transport system protein p37; PDBTitle: structure determination of the cancer-associated mycoplasma2 hyorhinis protein mh-p37
59 | d1h5oa_ |
| not modelled | 5.1 | 41 | Fold:Defensin-like Superfamily:Defensin-like Family:Myotoxin
60 | d1iw4a_ |
| not modelled | 5.1 | 50 | Fold:Kazal-type serine protease inhibitors Superfamily:Kazal-type serine protease inhibitors Family:Ovomucoid domain III-like
61 | c3hk4B_ |
| not modelled | 5.1 | 33 | PDB header:lyase Chain: B: PDB Molecule:mlr7391 protein; PDBTitle: crystal structure of a putative snoal-like polyketide cyclase2 [carbohydrate phosphatase] (mlr7391) from mesorhizobium loti at 1.963 a resolution

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0