 |
| Job Description | P15029 | | Confidence | 4.24% | Date | Thu Jan 5 11:34:13 GMT 2012 |
| Rank | 13 | Aligned Residues | 39 |
| % Identity | 13% | Template | d1rp3a1 |
| SCOP info | DNA/RNA-binding 3-helical bundle
| Sigma3 and sigma4 domains of RNA polymerase sigma factors
| Sigma3 domain
|
| Resolution | 2.30 |
|
|   |   |
200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
 |  |  |  |
|
|  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
F | C | R | D | L | D | L | L | A | L | G | D | A | R | A | T | T | L | G | V | S | V | P | H | T | R | F | W | A | L | L | L | A | V | A | M | T | S | T |
| Query Conservation |   |
  |   |   |   |
|   |
|
|   |
|
|   |   |   |
|   |
|
|
|
|   |
|   |   |   |   |   |   |   |
|   |   |   |   |
|
|   |
|   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|   |   |   |
|
|
|   |
|
|   |   |
|
|
|   |   |
|
|
|
|   |
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |
|
| Template Sequence |   |
L | K | E | K | L | G | R | E | P | T | D | E | E | V | A | K | E | L | G | I | S | T | E | E | L | F | K | T | L | D | K | I | N | F | S | Y | I | L | S |
| Template Known Secondary structure |   |
 |  |  |  |  | S | S |
|
|
|  |  |  |  |  |  |  |  | T | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
105 | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|