Phyre 2 alignment of Q9Z3A0 with c3izbD_

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Job Description | Q9Z3A0
Confidence | 2.45% | Date | Thu Jan 5 12:38:31 GMT 2012
Rank | 65 | Aligned Residues | 23
% Identity | 43% | Template | c3izbD_
PDB info | PDB header:ribosome | Chain: D: PDB Molecule:40s ribosomal protein rps4 (s4e); | PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
Resolution | NULL Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 69 | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | Y | V | T | G | G | N | N | Q | W | H | T | V | A | S | L | H | M | T | I | M | M | N | R | I | G | T | V | A | D | R | Q | P | K | A | R | K
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | Y | V | T | G | G | R | N | . | . | . | . | . | . | . | . | . | . | . | . | . | L | G | R | I | G | T | I | V | H | K | E | R | H | D | G | G
Template Known Secondary structure |  |  |  |  | S | S | S | S | . | . | . | . | . | . | . | . | . | . | . | . | . |  | S |  |  |  | B |  |  |  |  |  |  |  | S | S | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 182 | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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