Phyre 2 alignment of Q9Z3A0 with d2fzpa1

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Job Description | Q9Z3A0
Confidence | 1.81% | Date | Thu Jan 5 12:38:31 GMT 2012
Rank | 100 | Aligned Residues | 26
% Identity | 23% | Template | d2fzpa1
SCOP info | NRDP1 C-terminal domain-like | NRDP1 C-terminal domain-like | USP8 interacting domain
Resolution | 1.87

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | R | K | N | K | W | L | R | F | Q | T | V | C | R | Y | I | P | L | S | L | K | N | H | N | R | L | V | I | F | V | C
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template Sequence |  | Q | M | N | R | R | Y | Y | E | N | Y | V | A | K | R | I | P | . | . | . | . | G | K | Q | A | V | V | V | M | A | C
Template Known Secondary structure |  |  |  | T | T | T | G | G | G | G |  |  |  |  |  |  | T | . | . | . | . | T | S | S |  |  |  |  |  | G | G
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 266 | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . |  |  |  |  | . | . | . | . | . | . | . | . | 290 | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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