Phyre 2 Results for P22188

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Email | l.a.kelley@imperial.ac.uk
Description | P22188
Date | Thu Jan 5 11:38:45 GMT 2012
Unique Job ID | 1b2af8dbd87637a4

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c1e8cB_
Top template information
PDB header:ligase Chain: B: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamate--2,6- PDBTitle: structure of mure the udp-n-acetylmuramyl tripeptide2 synthetase from e. coli
Confidence and coverage
Confidence: | 100.0% | Coverage: | 99%
492 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | A | D | R | N | L | R | D | L | L | A | P | W | V | P | D | A | P | S | R | A | L | R | E | M | T | L | D | S | R | V | A | A | A | G | D | L | F | V | A | V | V | G | H | Q | A | D | G | R | R | Y | I | P | Q | A | I | A | Q | G | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | A | A | I | I | A | E | A | K | D | E | A | T | D | G | E | I | R | E | M | H | G | V | P | V | I | Y | L | S | Q | L | N | E | R | L | S | A | L | A | G | R | F | Y | H | E | P | S | D | N | L | R | L | V | G | V | T | G | T | N | G | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | T | T | T | T | Q | L | L | A | Q | W | S | Q | L | L | G | E | I | S | A | V | M | G | T | V | G | N | G | L | L | G | K | V | I | P | T | E | N | T | T | G | S | A | V | D | V | Q | H | E | L | A | G | L | V | D | Q | G | A | T | F | C
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | A | M | E | V | S | S | H | G | L | V | Q | H | R | V | A | A | L | K | F | A | A | S | V | F | T | N | L | S | R | D | H | L | D | Y | H | G | D | M | E | H | Y | E | A | A | K | W | L | L | Y | S | E | H | H | C | G | Q | A | I | I | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | A | D | D | E | V | G | R | R | W | L | A | K | L | P | D | A | V | A | V | S | M | E | D | H | I | N | P | N | C | H | G | R | W | L | K | A | T | E | V | N | Y | H | D | S | G | A | T | I | R | F | S | S | S | W | G | D | G | E | I | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | S | H | L | M | G | A | F | N | V | S | N | L | L | L | A | L | A | T | L | L | A | L | G | Y | P | L | A | D | L | L | K | T | A | A | R | L | Q | P | V | C | G | R | M | E | V | F | T | A | P | G | K | P | T | V | V | V | D | Y | A | H
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | T | P | D | A | L | E | K | A | L | Q | A | A | R | L | H | C | A | G | K | L | W | C | V | F | G | C | G | G | D | R | D | K | G | K | R | P | L | M | G | A | I | A | E | E | F | A | D | V | A | V | V | T | D | D | N | P | R | T | E | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480
Sequence |  | P | R | A | I | I | N | D | I | L | A | G | M | L | D | A | G | H | A | K | V | M | E | G | R | A | E | A | V | T | C | A | V | M | Q | A | K | E | N | D | V | V | L | V | A | G | K | G | H | E | D | Y | Q | I | V | G | N | Q | R | L | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | .
Sequence |  | Y | S | D | R | V | T | V | A | R | L | L | G | V | I | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c1e8cB_ |

### PDB 1e8c chain B

Region: 3 - 495
Aligned: 492
Modelled: 493
Confidence: 100.0%
Identity: 97%
PDB header:ligase
Chain: B: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamate--2,6-
PDBTitle: structure of mure the udp-n-acetylmuramyl tripeptide2 synthetase from e. coli

Phyre2
2 |
| c2wtzC_ |

### PDB 2wtz chain C

Region: 1 - 468
Aligned: 421
Modelled: 454
Confidence: 100.0%
Identity: 38%
PDB header:ligase
Chain: C: PDB Molecule:udp-n-acetylmuramoyl-l-alanyl-d-glutamate-
PDBTitle: mure ligase of mycobacterium tuberculosis

Phyre2
3 |
| c2am1A_ |

### PDB 2am1 chain A

Region: 1 - 474
Aligned: 434
Modelled: 448
Confidence: 100.0%
Identity: 18%
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine-d-glutamyl-lysine-d-alanyl-d-
PDBTitle: sp protein ligand 1

Phyre2
4 |
| c1gg4A_ |

### PDB 1gg4 chain A

Region: 4 - 469
Aligned: 417
Modelled: 452
Confidence: 100.0%
Identity: 21%
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamyl-2,6-
PDBTitle: crystal structure of escherichia coli udpmurnac-tripeptide2 d-alanyl-d-alanine-adding enzyme (murf) at 2.3 angstrom3 resolution

Phyre2
5 |
| c3lk7A_ |

### PDB 3lk7 chain A

Region: 22 - 490
Aligned: 410
Modelled: 428
Confidence: 100.0%
Identity: 20%
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine--d-glutamate ligase;
PDBTitle: the crystal structure of udp-n-acetylmuramoylalanine-d-2 glutamate (murd) ligase from streptococcus agalactiae to3 1.5a

Phyre2
6 |
| c2f00A_ |

### PDB 2f00 chain A

Region: 58 - 468
Aligned: 369
Modelled: 389
Confidence: 100.0%
Identity: 20%
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase;
PDBTitle: escherichia coli murc

Phyre2
7 |
| c2vosA_ |

### PDB 2vos chain A

Region: 87 - 466
Aligned: 365
Modelled: 374
Confidence: 100.0%
Identity: 21%
PDB header:ligase
Chain: A: PDB Molecule:folylpolyglutamate synthase protein folc;
PDBTitle: mycobacterium tuberculosis folylpolyglutamate synthase2 complexed with adp

Phyre2
8 |
| c3hn7A_ |

### PDB 3hn7 chain A

Region: 25 - 468
Aligned: 425
Modelled: 439
Confidence: 100.0%
Identity: 16%
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase;
PDBTitle: crystal structure of a murein peptide ligase mpl (psyc_0032) from2 psychrobacter arcticus 273-4 at 1.65 a resolution

Phyre2
9 |
| c1o5zA_ |

### PDB 1o5z chain A

Region: 91 - 466
Aligned: 346
Modelled: 370
Confidence: 100.0%
Identity: 16%
PDB header:ligase
Chain: A: PDB Molecule:folylpolyglutamate synthase/dihydrofolate synthase;
PDBTitle: crystal structure of folylpolyglutamate synthase (tm0166) from2 thermotoga maritima at 2.10 a resolution

Phyre2
10 |
| c2gc6A_ |

### PDB 2gc6 chain A

Region: 94 - 491
Aligned: 344
Modelled: 359
Confidence: 100.0%
Identity: 17%
PDB header:ligase
Chain: A: PDB Molecule:folylpolyglutamate synthase;
PDBTitle: s73a mutant of l. casei fpgs

Phyre2
11 |
| c1j6uA_ |

### PDB 1j6u chain A

Region: 28 - 494
Aligned: 371
Modelled: 394
Confidence: 100.0%
Identity: 22%
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate-alanine ligase murc;
PDBTitle: crystal structure of udp-n-acetylmuramate-alanine ligase2 murc (tm0231) from thermotoga maritima at 2.3 a resolution

Phyre2
12 |
| c3uagA_ |

### PDB 3uag chain A

Region: 54 - 494
Aligned: 364
Modelled: 395
Confidence: 100.0%
Identity: 21%
PDB header:ligase
Chain: A: PDB Molecule:protein (udp-n-acetylmuramoyl-l-alanine:d-
PDBTitle: udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase

Phyre2
13 |
| c1w78A_ |

### PDB 1w78 chain A

Region: 87 - 466
Aligned: 345
Modelled: 364
Confidence: 100.0%
Identity: 22%
PDB header:synthase
Chain: A: PDB Molecule:folc bifunctional protein;
PDBTitle: e.coli folc in complex with dhpp and adp

Phyre2
14 |
| c1gqqA_ |

### PDB 1gqq chain A

Region: 28 - 468
Aligned: 349
Modelled: 379
Confidence: 100.0%
Identity: 18%
PDB header:cell wall biosynthesis
Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase;
PDBTitle: murc - crystal structure of the apo-enzyme from haemophilus2 influenzae

Phyre2
15 |
| c3n2aA_ |

### PDB 3n2a chain A

Region: 92 - 466
Aligned: 341
Modelled: 358
Confidence: 100.0%
Identity: 20%
PDB header:ligase
Chain: A: PDB Molecule:bifunctional folylpolyglutamate synthase/dihydrofolate
PDBTitle: crystal structure of bifunctional folylpolyglutamate2 synthase/dihydrofolate synthase from yersinia pestis co92

Phyre2
16 |
| d1e8ca3 |

### PDB 1e8c chain A domain 3

Region: 105 - 338
Aligned: 233
Modelled: 234
Confidence: 100.0%
Identity: 96%
Fold: Ribokinase-like
Superfamily: MurD-like peptide ligases, catalytic domain
Family: MurCDEF

Phyre2
17 |
| d2gc6a2 |

### PDB 2gc6 chain A domain 2

Region: 87 - 337
Aligned: 240
Modelled: 251
Confidence: 100.0%
Identity: 17%
Fold: Ribokinase-like
Superfamily: MurD-like peptide ligases, catalytic domain
Family: Folylpolyglutamate synthetase

Phyre2
18 |
| c3eagA_ |

### PDB 3eag chain A

Region: 27 - 341
Aligned: 288
Modelled: 306
Confidence: 100.0%
Identity: 15%
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-
PDBTitle: the crystal structure of udp-n-acetylmuramate:l-alanyl-gamma-d-2 glutamyl-meso-diaminopimelate ligase (mpl) from neisseria3 meningitides

Phyre2
19 |
| d1p3da3 |

### PDB 1p3d chain A domain 3

Region: 95 - 337
Aligned: 210
Modelled: 219
Confidence: 100.0%
Identity: 22%
Fold: Ribokinase-like
Superfamily: MurD-like peptide ligases, catalytic domain
Family: MurCDEF

Phyre2
20 |
| d2jfga3 |

### PDB 2jfg chain A domain 3

Region: 96 - 337
Aligned: 201
Modelled: 221
Confidence: 100.0%
Identity: 26%
Fold: Ribokinase-like
Superfamily: MurD-like peptide ligases, catalytic domain
Family: MurCDEF

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1e8cB_ |
|  | 100.0 | 97 | PDB header:ligase Chain: B: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamate--2,6- PDBTitle: structure of mure the udp-n-acetylmuramyl tripeptide2 synthetase from e. coli
2 | c2wtzC_ |
|  | 100.0 | 38 | PDB header:ligase Chain: C: PDB Molecule:udp-n-acetylmuramoyl-l-alanyl-d-glutamate- PDBTitle: mure ligase of mycobacterium tuberculosis
3 | c2am1A_ |
|  | 100.0 | 18 | PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine-d-glutamyl-lysine-d-alanyl-d- PDBTitle: sp protein ligand 1
4 | c1gg4A_ |
|  | 100.0 | 21 | PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamyl-2,6- PDBTitle: crystal structure of escherichia coli udpmurnac-tripeptide2 d-alanyl-d-alanine-adding enzyme (murf) at 2.3 angstrom3 resolution
5 | c3lk7A_ |
|  | 100.0 | 20 | PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine--d-glutamate ligase; PDBTitle: the crystal structure of udp-n-acetylmuramoylalanine-d-2 glutamate (murd) ligase from streptococcus agalactiae to3 1.5a
6 | c2f00A_ |
|  | 100.0 | 20 | PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase; PDBTitle: escherichia coli murc
7 | c2vosA_ |
|  | 100.0 | 21 | PDB header:ligase Chain: A: PDB Molecule:folylpolyglutamate synthase protein folc; PDBTitle: mycobacterium tuberculosis folylpolyglutamate synthase2 complexed with adp
8 | c3hn7A_ |
|  | 100.0 | 16 | PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase; PDBTitle: crystal structure of a murein peptide ligase mpl (psyc_0032) from2 psychrobacter arcticus 273-4 at 1.65 a resolution
9 | c1o5zA_ |
|  | 100.0 | 16 | PDB header:ligase Chain: A: PDB Molecule:folylpolyglutamate synthase/dihydrofolate synthase; PDBTitle: crystal structure of folylpolyglutamate synthase (tm0166) from2 thermotoga maritima at 2.10 a resolution
10 | c2gc6A_ |
|  | 100.0 | 17 | PDB header:ligase Chain: A: PDB Molecule:folylpolyglutamate synthase; PDBTitle: s73a mutant of l. casei fpgs
11 | c1j6uA_ |
|  | 100.0 | 22 | PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate-alanine ligase murc; PDBTitle: crystal structure of udp-n-acetylmuramate-alanine ligase2 murc (tm0231) from thermotoga maritima at 2.3 a resolution
12 | c3uagA_ |
|  | 100.0 | 21 | PDB header:ligase Chain: A: PDB Molecule:protein (udp-n-acetylmuramoyl-l-alanine:d- PDBTitle: udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase
13 | c1w78A_ |
|  | 100.0 | 22 | PDB header:synthase Chain: A: PDB Molecule:folc bifunctional protein; PDBTitle: e.coli folc in complex with dhpp and adp
14 | c1gqqA_ |
|  | 100.0 | 18 | PDB header:cell wall biosynthesis Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase; PDBTitle: murc - crystal structure of the apo-enzyme from haemophilus2 influenzae
15 | c3n2aA_ |
|  | 100.0 | 20 | PDB header:ligase Chain: A: PDB Molecule:bifunctional folylpolyglutamate synthase/dihydrofolate PDBTitle: crystal structure of bifunctional folylpolyglutamate2 synthase/dihydrofolate synthase from yersinia pestis co92
16 | d1e8ca3 |
|  | 100.0 | 96 | Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:MurCDEF
17 | d2gc6a2 |
|  | 100.0 | 17 | Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:Folylpolyglutamate synthetase
18 | c3eagA_ |
|  | 100.0 | 15 | PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso- PDBTitle: the crystal structure of udp-n-acetylmuramate:l-alanyl-gamma-d-2 glutamyl-meso-diaminopimelate ligase (mpl) from neisseria3 meningitides
19 | d1p3da3 |
|  | 100.0 | 22 | Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:MurCDEF
20 | d2jfga3 |
|  | 100.0 | 26 | Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:MurCDEF
21 | d1o5za2 |
| not modelled | 100.0 | 14 | Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:Folylpolyglutamate synthetase
22 | d1e8ca2 |
| not modelled | 100.0 | 97 | Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain
23 | d1gg4a4 |
| not modelled | 100.0 | 20 | Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:MurCDEF
24 | d1j6ua3 |
| not modelled | 100.0 | 20 | Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:MurCDEF
25 | d1e8ca1 |
| not modelled | 99.9 | 98 | Fold:MurF and HprK N-domain-like Superfamily:MurE/MurF N-terminal domain Family:MurE/MurF N-terminal domain
26 | d1p3da2 |
| not modelled | 99.8 | 16 | Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain
27 | d1gg4a3 |
| not modelled | 99.8 | 24 | Fold:MurF and HprK N-domain-like Superfamily:MurE/MurF N-terminal domain Family:MurE/MurF N-terminal domain
28 | c3mvnA_ |
| not modelled | 99.8 | 28 | PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamayl-medo- PDBTitle: crystal structure of a domain from a putative udp-n-acetylmuramate:l-2 alanyl-gamma-d-glutamayl-medo-diaminopimelate ligase from haemophilus3 ducreyi 35000hp
29 | d1j6ua2 |
| not modelled | 99.7 | 29 | Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain
30 | d2jfga2 |
| not modelled | 99.7 | 20 | Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain
31 | d1gg4a1 |
| not modelled | 99.7 | 17 | Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain
32 | d1o5za1 |
| not modelled | 99.6 | 20 | Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:Folylpolyglutamate synthetase, C-terminal domain
33 | d2gc6a1 |
| not modelled | 99.5 | 20 | Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:Folylpolyglutamate synthetase, C-terminal domain
34 | d1a7ja_ |
| not modelled | 96.8 | 19 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase
35 | c2j37W_ |
| not modelled | 96.6 | 16 | PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs
36 | c3eh0C_ |
| not modelled | 96.4 | 12 | PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n- PDBTitle: crystal structure of lpxd from escherichia coli
37 | c3tqcB_ |
| not modelled | 96.3 | 22 | PDB header:transferase Chain: B: PDB Molecule:pantothenate kinase; PDBTitle: structure of the pantothenate kinase (coaa) from coxiella burnetii
38 | c3fmfA_ |
| not modelled | 96.2 | 33 | PDB header:ligase Chain: A: PDB Molecule:dethiobiotin synthetase; PDBTitle: crystal structure of mycobacterium tuberculosis dethiobiotin2 synthetase complexed with 7,8 diaminopelargonic acid carbamate
39 | c2f1rA_ |
| not modelled | 96.2 | 15 | PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis PDBTitle: crystal structure of molybdopterin-guanine biosynthesis2 protein b (mobb)
40 | c3pmoA_ |
| not modelled | 96.0 | 13 | PDB header:transferase Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase; PDBTitle: the structure of lpxd from pseudomonas aeruginosa at 1.3 a resolution
41 | c3b9qA_ |
| not modelled | 96.0 | 20 | PDB header:protein transport Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
42 | c3of5A_ |
| not modelled | 95.8 | 22 | PDB header:ligase Chain: A: PDB Molecule:dethiobiotin synthetase; PDBTitle: crystal structure of a dethiobiotin synthetase from francisella2 tularensis subsp. tularensis schu s4
43 | c2og2A_ |
| not modelled | 95.7 | 20 | PDB header:protein transport Chain: A: PDB Molecule:putative signal recognition particle receptor; PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana
44 | d2g0ta1 |
| not modelled | 95.7 | 16 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
45 | c2v3cC_ |
| not modelled | 95.6 | 18 | PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii
46 | c2qy9A_ |
| not modelled | 95.4 | 23 | PDB header:protein transport Chain: A: PDB Molecule:cell division protein ftsy; PDBTitle: structure of the ng+1 construct of the e. coli srp receptor2 ftsy
47 | c2obnA_ |
| not modelled | 95.3 | 14 | PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a duf1611 family protein (ava_3511) from anabaena2 variabilis atcc 29413 at 2.30 a resolution
48 | d1byia_ |
| not modelled | 95.1 | 34 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
49 | d1sq5a_ |
| not modelled | 94.9 | 19 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase
50 | d1xjca_ |
| not modelled | 94.8 | 17 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
51 | c2cnwF_ |
| not modelled | 94.6 | 18 | PDB header:signal recognition Chain: F: PDB Molecule:cell division protein ftsy; PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy
52 | c2bekB_ |
| not modelled | 94.6 | 29 | PDB header:chromosome segregation Chain: B: PDB Molecule:segregation protein; PDBTitle: structure of the bacterial chromosome segregation protein2 soj
53 | c3c8uA_ |
| not modelled | 94.6 | 27 | PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of putative fructose transport system kinase2 (yp_612366.1) from silicibacter sp. tm1040 at 1.95 a resolution
54 | c2ozeA_ |
| not modelled | 94.4 | 14 | PDB header:dna binding protein Chain: A: PDB Molecule:orf delta'; PDBTitle: the crystal structure of delta protein of psm19035 from2 streptoccocus pyogenes
55 | c3cioA_ |
| not modelled | 94.4 | 20 | PDB header:signaling protein, transferase Chain: A: PDB Molecule:tyrosine-protein kinase etk; PDBTitle: the kinase domain of escherichia coli tyrosine kinase etk
56 | d1vmaa2 |
| not modelled | 94.4 | 27 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
57 | d1rz3a_ |
| not modelled | 94.3 | 24 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase
58 | c1qzwC_ |
| not modelled | 94.2 | 19 | PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication
59 | c2qmoA_ |
| not modelled | 94.1 | 34 | PDB header:ligase Chain: A: PDB Molecule:dethiobiotin synthetase; PDBTitle: crystal structure of dethiobiotin synthetase (biod) from helicobacter2 pylori
60 | d2qy9a2 |
| not modelled | 94.1 | 28 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
61 | c2yhsA_ |
| not modelled | 94.1 | 17 | PDB header:cell cycle Chain: A: PDB Molecule:cell division protein ftsy; PDBTitle: structure of the e. coli srp receptor ftsy
62 | c1zu4A_ |
| not modelled | 94.1 | 20 | PDB header:protein transport Chain: A: PDB Molecule:ftsy; PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212
63 | c2vedA_ |
| not modelled | 94.0 | 18 | PDB header:transferase Chain: A: PDB Molecule:membrane protein capa1, protein tyrosine kinase; PDBTitle: crystal structure of the chimerical mutant capabk55m2 protein
64 | c3la6P_ |
| not modelled | 94.0 | 16 | PDB header:transferase Chain: P: PDB Molecule:tyrosine-protein kinase wzc; PDBTitle: octameric kinase domain of the e. coli tyrosine kinase wzc with bound2 adp
65 | c3dm5A_ |
| not modelled | 93.9 | 18 | PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.
66 | d2afhe1 |
| not modelled | 93.8 | 31 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
67 | d1hyqa_ |
| not modelled | 93.7 | 33 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
68 | c1hyqA_ |
| not modelled | 93.7 | 33 | PDB header:cell cycle Chain: A: PDB Molecule:cell division inhibitor (mind-1); PDBTitle: mind bacterial cell division regulator from a. fulgidus
69 | c2ph1A_ |
| not modelled | 93.7 | 23 | PDB header:ligand binding protein Chain: A: PDB Molecule:nucleotide-binding protein; PDBTitle: crystal structure of nucleotide-binding protein af2382 from2 archaeoglobus fulgidus, northeast structural genomics target gr165
70 | c2xj9B_ |
| not modelled | 93.6 | 29 | PDB header:replication Chain: B: PDB Molecule:mipz; PDBTitle: dimer structure of the bacterial cell division regulator mipz
71 | c2iy3A_ |
| not modelled | 93.6 | 16 | PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
72 | c3dmdA_ |
| not modelled | 93.4 | 21 | PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus
73 | d1iona_ |
| not modelled | 93.3 | 28 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
74 | c2gesA_ |
| not modelled | 93.1 | 18 | PDB header:transferase Chain: A: PDB Molecule:pantothenate kinase; PDBTitle: pantothenate kinase from mycobacterium tuberculosis (mtpank) in2 complex with a coenzyme a derivative, form-i (rt)
75 | d1okkd2 |
| not modelled | 93.1 | 37 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
76 | d1odfa_ |
| not modelled | 92.8 | 15 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase
77 | d1np6a_ |
| not modelled | 92.5 | 21 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
78 | c3q9lB_ |
| not modelled | 92.4 | 23 | PDB header:cell cycle, hydrolase Chain: B: PDB Molecule:septum site-determining protein mind; PDBTitle: the structure of the dimeric e.coli mind-atp complex
79 | d1p9ra_ |
| not modelled | 92.3 | 17 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
80 | c2px0D_ |
| not modelled | 92.3 | 26 | PDB header:biosynthetic protein Chain: D: PDB Molecule:flagellar biosynthesis protein flhf; PDBTitle: crystal structure of flhf complexed with gmppnp/mg(2+)
81 | d1qzxa3 |
| not modelled | 92.1 | 25 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
82 | c3k9gA_ |
| not modelled | 91.8 | 18 | PDB header:biosynthetic protein Chain: A: PDB Molecule:pf-32 protein; PDBTitle: crystal structure of a plasmid partition protein from borrelia2 burgdorferi at 2.25a resolution, iodide soak
83 | d1g3qa_ |
| not modelled | 91.8 | 31 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
84 | c3endA_ |
| not modelled | 91.6 | 31 | PDB header:oxidoreductase Chain: A: PDB Molecule:light-independent protochlorophyllide reductase PDBTitle: crystal structure of the l protein of rhodobacter2 sphaeroides light-independent protochlorophyllide3 reductase (bchl) with mgadp bound: a homologue of the4 nitrogenase fe protein
85 | d1ihua2 |
| not modelled | 91.4 | 25 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
86 | c1vmaA_ |
| not modelled | 91.1 | 16 | PDB header:protein transport Chain: A: PDB Molecule:cell division protein ftsy; PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution
87 | c2gksB_ |
| not modelled | 90.6 | 26 | PDB header:transferase Chain: B: PDB Molecule:bifunctional sat/aps kinase; PDBTitle: crystal structure of the bi-functional atp sulfurylase-aps kinase from2 aquifex aeolicus, a chemolithotrophic thermophile
88 | d1g6oa_ |
| not modelled | 90.1 | 16 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
89 | d1nksa_ |
| not modelled | 89.4 | 21 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
90 | c3fkqA_ |
| not modelled | 89.3 | 19 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ntrc-like two-domain protein; PDBTitle: crystal structure of ntrc-like two-domain protein (rer070207001320)2 from eubacterium rectale at 2.10 a resolution
91 | c3ez6B_ |
| not modelled | 89.3 | 20 | PDB header:dna binding protein Chain: B: PDB Molecule:plasmid partition protein a; PDBTitle: structure of para-adp complex:tetragonal form
92 | c2iu9C_ |
| not modelled | 89.2 | 13 | PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine PDBTitle: chlamydia trachomatis lpxd with 100mm udpglcnac (complex ii)
93 | c2j289_ |
| not modelled | 89.2 | 16 | PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs
94 | c3ibgF_ |
| not modelled | 89.1 | 23 | PDB header:hydrolase Chain: F: PDB Molecule:atpase, subunit of the get complex; PDBTitle: crystal structure of aspergillus fumigatus get3 with bound2 adp
95 | d1deka_ |
| not modelled | 88.0 | 29 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
96 | c2gzaB_ |
| not modelled | 88.0 | 14 | PDB header:hydrolase Chain: B: PDB Molecule:type iv secretion system protein virb11; PDBTitle: crystal structure of the virb11 atpase from the brucella suis type iv2 secretion system in complex with sulphate
97 | c2z0hA_ |
| not modelled | 87.8 | 38 | PDB header:transferase Chain: A: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of thymidylate kinase in complex with dtdp2 and adp from thermotoga maritima
98 | d1ls1a2 |
| not modelled | 87.6 | 27 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
99 | d1cp2a_ |
| not modelled | 87.4 | 32 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
100 | c3lv8A_ |
| not modelled | 87.4 | 24 | PDB header:transferase Chain: A: PDB Molecule:thymidylate kinase; PDBTitle: 1.8 angstrom resolution crystal structure of a thymidylate kinase2 (tmk) from vibrio cholerae o1 biovar eltor str. n16961 in complex3 with tmp, thymidine-5'-diphosphate and adp
101 | d1j8yf2 |
| not modelled | 87.4 | 18 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
102 | c3asyB_ |
| not modelled | 87.3 | 42 | PDB header:transferase Chain: B: PDB Molecule:uridine kinase; PDBTitle: ligand-free structure of uridine kinase from thermus thermophilus hb8
103 | c3zq6D_ |
| not modelled | 87.0 | 25 | PDB header:hydrolase Chain: D: PDB Molecule:putative arsenical pump-driving atpase; PDBTitle: adp-alf4 complex of m. therm. trc40
104 | d1uj2a_ |
| not modelled | 86.6 | 26 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase
105 | c3jvvA_ |
| not modelled | 86.2 | 15 | PDB header:atp binding protein Chain: A: PDB Molecule:twitching mobility protein; PDBTitle: crystal structure of p. aeruginosa pilt with bound amp-pcp
106 | c2wooC_ |
| not modelled | 86.1 | 26 | PDB header:hydrolase Chain: C: PDB Molecule:atpase get3; PDBTitle: nucleotide-free form of s. pombe get3
107 | c1m8pB_ |
| not modelled | 85.8 | 18 | PDB header:transferase Chain: B: PDB Molecule:sulfate adenylyltransferase; PDBTitle: crystal structure of p. chrysogenum atp sulfurylase in the t-state
108 | d1khta_ |
| not modelled | 85.3 | 30 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
109 | c2wwiC_ |
| not modelled | 85.3 | 17 | PDB header:transferase Chain: C: PDB Molecule:thymidilate kinase, putative; PDBTitle: plasmodium falciparum thymidylate kinase in complex with2 aztmp and adp
110 | c3hdtB_ |
| not modelled | 84.7 | 14 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative kinase; PDBTitle: crystal structure of putative kinase from clostridium symbiosum atcc2 14940
111 | d1nn5a_ |
| not modelled | 84.1 | 20 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
112 | c2dwuA_ |
| not modelled | 84.1 | 16 | PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase isoform race1 from bacillus2 anthracis
113 | c2oaq1_ |
| not modelled | 84.0 | 18 | PDB header:hydrolase Chain: 1: PDB Molecule:type ii secretion system protein; PDBTitle: crystal structure of the archaeal secretion atpase gspe in complex2 with phosphate
114 | c3ug7D_ |
| not modelled | 83.9 | 21 | PDB header:hydrolase Chain: D: PDB Molecule:arsenical pump-driving atpase; PDBTitle: crystal structure of get3 from methanocaldococcus jannaschii
115 | c2wojD_ |
| not modelled | 83.2 | 19 | PDB header:hydrolase Chain: D: PDB Molecule:atpase get3; PDBTitle: adp-alf4 complex of s. cerevisiae get3
116 | c1ueiB_ |
| not modelled | 83.2 | 26 | PDB header:transferase Chain: B: PDB Molecule:uridine-cytidine kinase 2; PDBTitle: crystal structure of human uridine-cytidine kinase 22 complexed with a feedback-inhibitor, utp
117 | c2plrB_ |
| not modelled | 83.1 | 23 | PDB header:transferase Chain: B: PDB Molecule:probable thymidylate kinase; PDBTitle: crystal structure of dtmp kinase (st1543) from sulfolobus tokodaii2 strain7
118 | d1ihua1 |
| not modelled | 83.0 | 18 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
119 | c3ea0B_ |
| not modelled | 83.0 | 17 | PDB header:hydrolase Chain: B: PDB Molecule:atpase, para family; PDBTitle: crystal structure of para family atpase from chlorobium tepidum tls
120 | d1ki9a_ |
| not modelled | 83.0 | 31 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0