18/01/2012 23:31:10 : INFO  : Run start: Wed Jan 18 23:31:10 GMT 2012
18/01/2012 23:31:10 : INFO  : Initialised job
18/01/2012 23:31:10 : INFO  : Renaming log file 'phyre2_20120118_233110.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/1b2af8dbd87637a4/phyre_20120118_233110.log'
18/01/2012 23:31:10 : INFO  : Initialised job:
Sequence
>batch____
MADRNLRDLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGHQADGRRYIPQAIAQGV
AAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYHEPSDNLRLVGVTGTNGK
TTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFC
AMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIIN
ADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIE
SHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPVCGRMEVFTAPGKPTVVVDYAH
TPDALEKALQAARLHCAGKLWCVFGCGGDRDKGKRPLMGAIAEEFADVAVVTDDNPRTEE
PRAIINDILAGMLDAGHAKVMEGRAEAVTCAVMQAKENDVVLVAGKGHEDYQIVGNQRLD
YSDRVTVARLLGVIA

18/01/2012 23:31:10 : INFO  : Checked sequence
18/01/2012 23:31:10 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 23:31:10 : INFO  : PSI-BLAST 3 iterations
18/01/2012 23:34:17 : INFO  : PSI-BLAST 5 iterations
18/01/2012 23:38:22 : INFO  : Finished PSI-BLAST
18/01/2012 23:38:22 : INFO  : Running Buildali to generate a3m file
19/01/2012 00:21:26 : INFO  : Converting to HMM
19/01/2012 00:21:38 : INFO  : Calibrating HMM
19/01/2012 00:21:51 : INFO  : Searching HMM database
19/01/2012 00:31:14 : INFO  : Finished buildali
19/01/2012 00:31:14 : INFO  : Predicting secondary structure
19/01/2012 00:31:15 : INFO  : Predicted secondary structure (PSI-Pred)
19/01/2012 00:31:15 : INFO  : Predicting Disordered regions
19/01/2012 00:31:15 : INFO  : Predicted Disorder (Disopred)
19/01/2012 00:31:15 : INFO  : Running memsat_svm check
19/01/2012 00:36:00 : INFO  : Globular protein
19/01/2012 00:36:00 : INFO  : Predicted Transmembrane (memsat_svm) ID '1b2af8dbd87637a4'
19/01/2012 00:36:00 : INFO  : Initialising fold library search
19/01/2012 00:36:00 : INFO  : Initialised search input
19/01/2012 00:36:00 : INFO  : Building Ensemble models
19/01/2012 00:36:00 : INFO  : Building hh.c1e8cB_.model.1.pdb
19/01/2012 00:36:01 : INFO  : Building c1e8cB_.1.pdb
19/01/2012 00:36:01 : INFO  : Building c2wtzC_.2.pdb
19/01/2012 00:36:02 : INFO  : Building c2am1A_.3.pdb
19/01/2012 00:36:03 : INFO  : Building c1gg4A_.4.pdb
19/01/2012 00:36:03 : INFO  : Building c3lk7A_.5.pdb
19/01/2012 00:36:04 : INFO  : Building c2f00A_.6.pdb
19/01/2012 00:36:04 : INFO  : Building c2vosA_.7.pdb
19/01/2012 00:36:05 : INFO  : Building c3hn7A_.8.pdb
19/01/2012 00:36:05 : INFO  : Building c1o5zA_.9.pdb
19/01/2012 00:36:06 : INFO  : Building c2gc6A_.10.pdb
19/01/2012 00:36:06 : INFO  : Building c1j6uA_.11.pdb
19/01/2012 00:36:09 : INFO  : Building c3uagA_.12.pdb
19/01/2012 00:36:09 : INFO  : Building c1w78A_.13.pdb
19/01/2012 00:36:10 : INFO  : Building c1gqqA_.14.pdb
19/01/2012 00:36:10 : INFO  : Building c3n2aA_.15.pdb
19/01/2012 00:36:11 : INFO  : Building d1e8ca3.16.pdb
19/01/2012 00:36:11 : INFO  : Building d2gc6a2.17.pdb
19/01/2012 00:36:12 : INFO  : Building c3eagA_.18.pdb
19/01/2012 00:36:12 : INFO  : Building d1p3da3.19.pdb
19/01/2012 00:36:12 : INFO  : Building d2jfga3.20.pdb
19/01/2012 00:36:16 : INFO  : Finished HH model building
19/01/2012 00:36:16 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
19/01/2012 00:36:20 : INFO  : html domain output complete ID '1b2af8dbd87637a4'
19/01/2012 04:44:45 : INFO  : Run end  : Thu Jan 19 04:44:45 GMT 2012
