Phyre 2 alignment of P22188 with c1nijA_

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Job Description | P22188
Confidence | 55.64% | Date | Thu Jan 5 11:38:45 GMT 2012
Rank | 240 | Aligned Residues | 33
% Identity | 39% | Template | c1nijA_
PDB info | PDB header:structural genomics, unknown function | Chain: A: PDB Molecule:hypothetical protein yjia; | PDBTitle: yjia protein
Resolution | 2.00 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 108 | . | 110 | . | . | . | . | . | . |  |  | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . |  | . | . | . | . | . | 140 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |
Query Sequence |  | N | L | R | L | V | G | V | T | G | . | . | T | N | G | K | T | T | T | T | Q | L | L | A | Q | W | S | Q | L | L | . | G | E | I | S | A | V | M | G | T
Query Conservation |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | P | I | A | V | T | L | L | T | G | F | L | G | A | G | K | T | T | . | . | . | L | L | R | H | I | L | N | E | Q | H | G | Y | K | I | A | V | I | E | N
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  | S | S | S | S | S |  |  |  | . | . | . |  |  |  |  |  |  |  | S |  |  |  |  |  |  |  |  |  |  | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . |  |  |  | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | .

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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