HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/1acab8f074ab7d83/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/1acab8f074ab7d83/query.hhm DATE Sun Jan 15 01:41:26 2012 LENG 126 match states, 126 columns in multiple alignment FILT 63 out of 65 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.5 EVD 0.4017 -0.3612 SEQ >ss_pred CHHHHHHHHCCCEEEECCEEEEEEEEEECHHHHHHCCCCCCCEEEEEECCCCCEEEEEEEECCCCCCEEEECCHHHCCCCCCCEEEEEEEEECCHHHHCC CCCEEEEECCCCCEEEEECCCCEECC >ss_conf 9352434410310650432302344545678898719977737999987998689999996688972899756024060689989998853138666077 77469998799869886313450119 >Consensus MxrxxLksKiHraxVTxaxlxYxGSItIDxxLlxaagilpxExVxVxNvnNGxRfxTYvIxgxxGSgxixlNGaAArlxxxGDxvIIxayxxxxxxexxx xxpxvvxvdxxNxixxxxxxxxxqxa >batch____ MIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAIDIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEART WRPNVAYFEGDNEMKRTAKAIPVQVA >UniRef50_UPI0001C16C14(1-119:134) Aspartate decarboxylase n=2 Tax=Nostocaceae RepID=UPI0001C16C14 E=4e-40 s/c=1.39 id=38% cov=95% MQRTLLLAKLHNCTLTGANVNYVGSISVDLVLLHEAGILPYEQVQVVNKNNGKRLITYTIPAPANSGIIELNGAAARLGVTGDRLIIMTYGQFTAEELKG YSPRVVIVNERNQILEVGN------- >UniRef50_Q118E6(4-119:158) Aspartate 1-decarboxylase alpha chain n=3 Tax=Cyanobacteria RepID=PAND_TRIEI E=1e-37 s/c=1.35 id=33% cov=91% --IKLMHAKLHRVRVTDAKPDYVGSVTIDSDLLEKVGILPLEEVQIVNLNNGQRWLTYVLPGQAGSGMVCPNGGAALLCKKDDILIIWANEQCDRAEVle NGHKAKIFVADENNHCRE---------- >UniRef50_B6WV89(23-146:167) Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WV89_9DELT E=4e-35 s/c=1.19 id=37% cov=98% ----VVGAKLHGIVVTESKLNYHGSITIDTDILEAARLLPLEYVYIWNKHSGSRIETYVLPGPRGSGVVCLNGAAARTCQVGDEIIVASSREIPVSDYhD GFSCRVLTFDQSGELpNRVAEKLEYRVA >UniRef50_C8WY09(1-122:132) Aspartate 1-decarboxylase n=3 Tax=Bacillales RepID=C8WY09_ALIAD E=3e-43 s/c=1.44 id=40% cov=98% MLRQMCKGKLHRVRVTQADLNYVGSITLDPVLMRAARIRPYEMVQITNLENGVLWSTYAIPGDEGSGIVCLNGPPARHFQPGDRVIVLSLAWVDEAEWET FRAAVVLVDDDNRITSIVTTKP---- >UniRef50_B2V7Y0(1-123:134) Aspartate 1-decarboxylase alpha chain n=6 Tax=Aquificales RepID=PAND_SULSY E=4e-40 s/c=1.34 id=41% cov=98% MYRTLLKSKVHRIKITGADLHYEGSLTLDEEIMEAANLIPFEKIEVYNVNNGQRFSTYVIPGVRYSGECILNGAAARLGHYGDIIIIASYAAVNEKDLES FKVNLVYIDENtNTIKEKKEVLA---- >UniRef50_C1QBS4(1-114:116) Aspartate 1-decarboxylase n=1 Tax=Brachyspira murdochii DSM 12563 RepID=C1QBS4_9SPIR E=3e-33 s/c=1.25 id=31% cov=91% MMRSVIKSKIHRLTVTRTDLNFKDSITIDEALMDKSDILEGDRVSVINLSNDERFETVAIKGIRGTGVIGINGDNVHYAKKDDTIIILSYGHIAEDSINN FKTKVIFVNMKNFI------------ >UniRef50_C5SIR7(1-117:121) Aspartate 1-decarboxylase n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SIR7_9CAUL E=5e-35 s/c=1.26 id=38% cov=94% -MRQLLRSKIHNAYVTEANLAYIGSITIDEDLMDAVGLWEGERVLVVSNTSGARLETYVITGERGSGKIAMNGAAAHLISESEQIIIMGFELTDVPII-- --PRVVLVDRQNRVDRYLSETP---- >UniRef50_Q2RXZ9(53-117:135) Aspartate 1-decarboxylase-like n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RXZ9_RHORT E=5e-15 s/c=1.26 id=34% cov=51% ---------------------------------------PAARVSIWNKPNGARVLTYVIFGAPGSRCCILNGAAARLWAPshGDTI-----------PY RTHPPSLLAVQHRRR------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 3259 0 0 I 2 * * 5070 * 4176 * 5880 3748 4555 1907 2764 * * 2107 5494 4920 * * * 3649 2 0 * * * * * * 3472 0 0 R 3 * * * 4851 5241 * * 3089 5523 3295 5102 5425 * * 698 * * 5120 * * 3 0 * * * * * * 3491 0 0 T 4 * 5607 * 3570 * * 5623 2768 2715 * * * * 3252 * 2892 1573 * * * 4 43 5080 * 0 * * * 3508 1000 0 M 5 * * * * 3296 * * 4607 * 1828 1504 * * 5301 * * * 2822 * 4152 5 0 * * * * * * 3532 0 0 L 6 * 5435 * * 4979 * * 3554 * 522 3365 * * * * * * 3915 * * 6 0 * * * * * * 3532 0 0 Q 7 5399 * * * 6125 4169 3750 5965 1159 5075 * 5737 * 4488 2511 4811 6671 * * 4197 7 0 * * * * * * 3539 0 0 G 8 1526 4687 * * * 2977 * * * * * * * * * 1038 * * * * 8 0 * * * * * * 3539 0 0 K 9 * * * * * * * * 0 * * * * * * * * * * * 9 0 * * * * * * 3539 0 0 L 10 5130 * * * * * * 792 * 1499 * * * * * 5393 * 5942 * * 10 0 * * * * * * 3539 0 0 H 11 * * * * * * 29 * * * * * * * * 5654 * * * * 11 0 * * * * * * 3539 0 0 R 12 * * * * * 2654 6125 * * 5061 4340 3882 * 5295 699 * 5760 * * 5654 12 0 * * * * * * 3539 0 0 V 13 816 5078 * * * 4571 * 3396 * 3276 * * * * * * * 2627 * * 13 0 * * * * * * 3539 0 0 K 14 5393 5920 * * * * * 5604 2799 * 5311 * * 6020 2057 * 1218 3947 * 5661 14 0 * * * * * * 3539 0 0 V 15 * * * * * * * 3155 * 4385 * * * * * * 5858 282 * * 15 0 * * * * * * 3541 0 0 T 16 * * * * * * * * * * * * * * * 4766 54 * * * 16 0 * * * * * * 3541 0 0 H 17 4222 5866 2962 2471 * 2070 3402 * * * * 5447 * 2813 3472 5894 * 5998 * * 17 0 * * * * * * 3541 0 0 A 18 834 3579 * * * 4580 * * 3364 * * * * * 5302 3437 3342 * * * 18 0 * * * * * * 3541 0 0 D 19 * 5023 1351 2493 * * * * 4154 5765 * 1842 * * * 4440 * * * * 19 0 * * * * * * 3541 0 0 L 20 * * * * * * * 3640 * 508 * * 4678 * 5302 * * 2719 * * 20 0 * * * * * * 3541 0 0 H 21 5663 * 2268 2792 4758 * 2234 * * * * 1637 * 5322 * * * * * 4956 21 0 * * * * * * 3541 0 0 Y 22 * * * * 4471 * 5404 * * * * * * * * * * * * 103 22 0 * * * * * * 3541 0 0 E 23 * * 4519 1379 * * 3674 3962 4471 * 5101 * * 5606 5866 * * 1710 * 6401 23 0 * * * * * * 3541 0 0 G 24 * * 4471 * * 67 * * * * * * * * * * * * * * 24 0 * * * * * * 3541 0 0 S 25 * * * * * * * * * * * * * * * 0 * * * * 25 0 * * * * * * 3541 0 0 C 26 * 3565 * * * * * 573 * 2922 4815 * * * * * * 3722 * * 26 0 * * * * * * 3541 0 0 A 27 2759 * * 3979 * 5101 * * * * * * * * * 2621 744 * * * 27 0 * * * * * * 3541 0 0 I 28 * * * * * * * 599 * 2699 * * * * * * * 2429 * * 28 0 * * * * * * 3541 0 0 D 29 * 5804 207 * * 5149 * * * * * * 4367 * * 4910 * * * 7430 29 0 * * * * * * 3541 0 0 Q 30 3823 * 5644 2128 * 4913 * 5867 3568 5229 * * 2863 3435 3573 3483 3956 4282 * * 30 0 * * * * * * 3541 0 0 D 31 3628 * 1529 1867 * * 5858 6023 * 5971 * 5925 * 4722 6128 5932 3819 3409 * * 31 0 * * * * * * 3541 0 0 F 32 * * * * 3626 * 5770 3086 * 396 * * * 5447 * * * * * * 32 0 * * * * * * 3541 0 0 L 33 4837 4094 * * * * * 3811 * 1075 1471 * * * * * * * * * 33 0 * * * * * * 3541 0 0 D 34 4116 * 2056 1283 * 5404 6041 * 3331 5894 * * * 4857 4110 * 5644 5413 * * 34 0 * * * * * * 3541 0 0 A 35 981 5804 * 4297 * * * * 2793 4653 5447 * * 3413 4187 4861 5866 5858 * * 35 0 * * * * * * 3541 0 0 A 36 617 * * * * * * * * 5404 * * * * * 3236 * 2196 * * 36 0 * * * * * * 3541 0 0 G 37 * * 2839 5894 * 897 * * 5413 * * 2180 * * 4557 5644 * * * * 37 0 * * * * * * 3541 0 0 I 38 * * * * 4761 * * 687 * 1810 4131 * * * * * * * * * 38 0 * * * * * * 3541 0 0 L 39 * * * * * * 4214 3366 3912 941 5698 * * * 4026 5640 * 4175 4197 4291 39 0 * * * * * * 3541 0 0 E 40 5827 * * 1928 * * * 5653 * * * * 552 * * * * 5822 * * 40 0 * * * * * * 3564 0 0 N 41 5733 * * * 3652 1957 4479 * * 2510 5530 3304 * * * * * * * 1733 41 0 * * * * * * 3571 0 0 E 42 5733 * 4872 154 * * * * * * 4903 * * 6047 * * * * * * 42 0 * * * * * * 3571 0 0 A 43 4256 * * 3499 4665 * * * 1700 4669 5498 * * 2652 2231 5434 * 5658 * 4823 43 0 * * * * * * 3571 0 0 I 44 * * * * * * * 2569 * 5434 * * * * * * * 307 * * 44 0 * * * * * * 3571 0 0 D 45 * 5562 2824 2635 * * 3581 * * 2490 6034 5964 * 2459 * 3346 5596 6350 5138 4566 45 0 * * * * * * 3571 0 0 I 46 * * * * * * * 1133 * * * * * * * * * 878 * * 46 0 * * * * * * 3571 0 0 W 47 3507 * * * 5737 5915 * 4218 * * * * * * * 5109 5498 1194 2291 2938 47 0 * * * * * * 3571 0 0 N 48 * * 2759 * * * * * * * * 307 * * * 4506 * * * * 48 0 * * * * * * 3571 0 0 V 49 * * * * * * * 2831 3210 2221 3898 4300 * * 5785 * * 1319 * * 49 0 * * * * * * 3571 0 0 T 50 4784 * 3817 4409 * * 5736 * * * 5916 1078 5733 * * 3799 2022 * * * 50 0 * * * * * * 3571 0 0 N 51 5964 * * * * 6419 * * * * * 372 * * 5434 2669 5708 * * * 51 0 * * * * * * 3571 0 0 G 52 3946 * 4218 * * 182 * * * * * * * * * * * * * * 52 0 * * * * * * 3571 0 0 K 53 1881 * * 1914 * * 5881 5675 4490 * * 2961 * 3329 * 4583 4178 4126 * * 53 0 * * * * * * 3571 0 0 R 54 * 5402 * * * * * * * 5490 * * * * 68 * * * * * 54 0 * * * * * * 3570 0 0 F 55 * * * * 1020 * * 3500 * 1662 * * * * * * * 5732 3578 * 55 0 * * * * * * 3570 0 0 S 56 4789 * 5886 1208 * * * 4131 * 4759 * * * 6216 * 1999 3878 3498 * * 56 0 * * * * * * 3570 0 0 T 57 * * * * * * * * * * * * * * * * 0 * * * 57 0 * * * * * * 3570 0 0 Y 58 * * * 5675 * * * * * * * * * * * * * 4871 * 80 58 0 * * * * * * 3570 0 0 A 59 1519 * * * * * * 4438 * 5318 * * * * * * 3547 1016 * * 59 0 * * * * * * 3570 0 0 I 60 * * * * 5783 * * 286 * 2856 * * * * * * 5402 * * * 60 0 * * * * * * 3570 0 0 A 61 4161 * * 2520 4627 * 5402 * 2914 5808 * 4833 1495 5335 4496 * 4809 6710 * 4297 61 0 * * * * * * 3570 0 0 A 62 2126 * * 5124 * 430 * * * * * * * * * * * * * * 62 0 * * * * * * 3570 0 0 E 63 4251 * 3091 1213 * * 5783 4218 4437 5420 * * 2815 4238 5963 5053 * 5978 * * 63 55 * 4743 * * * * 3570 0 0 R 64 2453 * * 3820 * 6321 * * 2948 * * 6003 2517 * 1332 * 5881 * * * 64 30 * 5617 * * * 0 3549 0 1514 G 65 * * 5230 6502 * 353 * * 5765 * * 2977 * * * * * * * 4876 65 81 * 4196 * * 0 * 3543 0 1796 S 66 * * * 6295 * 5789 * * 4842 * * * * * * 351 2733 * * * 66 0 * * * * * 0 3543 0 1730 R 67 * * * * * 616 * * 4163 * * 5313 * * 2166 5275 5816 * * * 67 0 * * * * 0 * 3543 0 1730 I 68 5143 3722 4630 2261 * * * 2604 4359 * 4568 5325 * 4919 5306 * 3041 2420 * * 68 0 * * * * * * 3562 0 0 I 69 * 3197 * * 4747 * * 702 * 5497 4855 * * * * * * 2455 * * 69 0 * * * * * * 3562 0 0 S 70 4646 1543 * 3863 * 2602 * 3382 * * * 5596 * 3807 * 3716 6009 3267 * * 70 0 * * * * * * 3533 0 0 V 71 5380 * * * * * * 2792 * 859 4030 * 3654 * * * * 2839 * * 71 0 * * * * * * 3533 0 0 N 72 * * * * * * * * * * * 58 * * 5744 * * * * 5596 72 0 * * * * * * 3533 0 0 G 73 * * * * * 0 * * * * * * * * * * * * * * 73 0 * * * * * * 3533 0 0 A 74 533 * 4163 * * 3055 * * * * * * 3056 * * 6343 * * * * 74 0 * * * * * * 3533 0 0 A 75 257 * * * * 5291 * * * * * 4163 5347 * * 5156 5090 * * * 75 0 * * * * * * 3533 0 0 A 76 83 * * * * * * * * * * * * * * * * 4163 * * 76 0 * * * * * * 3533 0 0 H 77 * * * * * * 1512 * 5837 3659 * * * * 855 * * * * * 77 0 * * * * * * 3533 0 0 C 78 * 4545 * * * * 4212 * 2905 906 5931 * * * 3813 6015 3693 * * 4163 78 0 * * * * * * 3533 0 0 A 79 2000 2503 * * 4699 2288 * 3630 * * * * * * * * 5690 2243 5731 * 79 0 * * * * * * 3533 0 0 S 80 2944 6192 * 2906 * * 4141 * 2443 5915 5931 5287 * 2090 4786 4282 3900 4861 * * 80 0 * * * * * * 3533 0 0 V 81 4976 * * 4622 * * * 3751 2780 * * * 1551 4421 6113 5984 4634 2104 * 5904 81 27 5731 * 1000 1000 * * 3533 1000 0 G 82 * * 3471 * * 219 * * * * * 5690 * 6450 * 5647 * * * * 82 0 * * * * * * 3533 0 0 D 83 * * 93 4463 * * * * * * * * * 5862 * * * * * * 83 0 * * * * * * 3533 0 0 I 84 * * * 3239 * * 5381 2387 4342 3062 * * * 3776 1784 * 3197 4737 * * 84 0 * * * * * * 3533 0 0 V 85 * * * * * * * 1520 * 2427 * * * * * * * 1104 * * 85 27 * 5731 * * * * 3533 0 0 I 86 * * * * 5635 * * 177 * * * * * * * * 4271 4527 * * 86 0 * * * * * 0 3511 0 1000 I 87 * * * * * * * 405 * 3769 * * * * * * * 2543 * * 87 0 * * * * * 0 3511 0 1000 A 88 1915 4952 * * 3737 * * 2656 * 2959 1901 * * * * * * 5808 5673 4830 88 0 * * * * * 0 3511 0 1000 S 89 1006 * * * * 4769 * * * * * 5853 * * * 1456 3577 * * * 89 0 * * * * * 0 3511 0 1000 F 90 * * * * 2004 * * * * 5326 * 5673 * * * 3636 * * 4693 769 90 0 * * * * * 0 3511 0 1000 V 91 1548 4504 * 3184 * 2142 * 5722 * * * * * * 5606 4383 3665 3169 * * 91 0 * * * * * 0 3511 0 1000 T 92 5881 5698 4588 4275 4695 6119 4139 6430 * 2997 3332 5190 * 2224 * 4265 3768 4009 4421 4353 92 0 * * * * * 0 3511 0 1000 M 93 * 3717 * * 6045 6119 * 2529 5998 2689 2598 * * * 5690 4430 4135 2342 * 3934 93 28 * 5698 * * * 0 3511 0 1000 P 94 4750 * 1502 3393 * * * * 5866 4820 * 4066 2624 * 5260 4537 2549 * * * 94 83 5352 5000 0 * * 0 3500 1000 1385 D 95 3885 * 3903 1608 5875 5404 5736 * 5179 5646 5206 5166 2948 * 4135 3576 5617 3560 * * 95 31 * 5573 * * 990 1010 3498 0 1963 E 96 2449 * 2744 2074 * 5235 * 5910 3427 * * 3707 3588 3960 * 4181 * 6073 * * 96 0 * * * * 588 1580 3494 0 1745 E 97 5274 * 2981 1042 * * * 3884 3620 * * 4063 4991 4385 * 4774 5617 * * 5899 97 77 * 4263 * * * 0 3525 0 1000 A 98 1610 5817 * * * * * 2464 * 2715 * * 3909 * 4554 * 5842 3535 5265 3603 98 245 3256 4279 778 1262 1013 987 3499 1928 2046 R 99 2655 * 4875 2589 * * * 4999 2499 5767 * 4109 3850 * 2154 * 5734 5633 * 5412 99 0 * * * * 1783 495 3466 0 1925 T 100 5010 * 3665 4073 * 2372 4452 5789 4322 4894 * 2902 3841 6092 6566 3809 2754 4586 * * 100 85 * 4123 * * * 0 3474 0 1631 W 101 * * * * 1876 * 1213 3868 * 4647 * * * * 5600 * * 4528 4000 4028 101 0 * * * * 1602 576 3442 0 2638 R 102 4626 * 5835 3263 5633 * 4360 5618 1243 * 6691 5549 5664 3890 3739 3692 5869 4698 * * 102 0 * * * * 0 * 3454 0 2065 P 103 2450 5667 * * * * * * * * * * 564 6014 * * 3810 4867 * * 103 0 * * * * * * 3533 0 0 N 104 4557 * 5727 * * * * 5810 1873 * 5915 3983 * 4004 1751 4477 2923 5936 6010 * 104 0 * * * * * * 3533 0 0 V 105 * * * * * * * 2444 4601 2866 5810 * * * * * 5598 738 * * 105 0 * * * * * * 3533 0 0 A 106 4118 * * * 5728 * * 2293 * 2342 * * * * * * 5690 991 * * 106 0 * * * * * * 3533 0 0 Y 107 5723 * * * 2322 * 4484 2736 5618 2407 4991 * * 5786 * * 4032 2681 * 3174 107 0 * * * * * * 3526 0 0 F 108 3800 5267 * * 2809 * * 4741 * 2811 3739 * 5975 * * 5264 * 1112 * * 108 28 * 5685 * * * * 3526 0 0 E 109 * * 851 5196 * 3751 * * * 5395 * 1838 * 5712 * * 5535 * * * 109 0 * * * * 0 * 3514 0 1000 G 110 2805 * 3047 1176 * 4707 4803 * * * 4151 5841 4162 4266 5592 5892 * * * * 110 0 * * * * * * 3526 0 0 D 111 5436 * 2546 3173 5857 4897 5267 * 2281 4900 * 2347 * 4464 4711 4115 5556 * * 5661 111 25 5875 * 0 * * * 3526 1000 0 N 112 * * 5975 * * 4632 * * * * * 113 * * 5723 * * * * * 112 0 * * * * * * 3526 0 0 E 113 4501 * 6314 2284 4765 * 4494 * 4005 * 5654 3227 * 2976 1774 5674 5122 * * * 113 0 * * * * * * 3525 0 0 M 114 * 5384 * * * * * 778 * 3266 5114 * 4613 * * * * 2188 * * 114 69 4421 * 787 1251 * * 3495 1542 0 K 115 7364 * 3966 3586 * 5595 * 5792 2506 3427 * 5206 * 4184 4534 4212 3328 1943 * * 115 0 * * * * * * 3441 0 0 R 116 * * * 1167 * * 3784 * 3156 * * 4668 * 4893 2385 3706 5121 * * * 116 0 * * * * * * 3383 0 0 T 117 5211 * 5271 * * * 5115 1702 4277 5771 * 5088 * 5381 5295 5313 3747 1649 * 4519 117 0 * * * * * * 3260 0 0 A 118 2602 * * * * 3815 5196 * 2467 4362 * * * 4897 1670 4199 3982 4571 * * 118 0 * * * * * * 3206 0 0 K 119 5080 * * 2873 * 4712 * * 2104 * * 2232 3541 4733 3587 3499 4179 * * * 119 0 * * * * * * 3158 0 0 A 120 3640 * * 1960 * 2923 3432 * 3906 3556 * * * * * 4648 3216 2847 * * 120 0 * * * * * * 3172 0 0 I 121 * * * * * * * 1787 3722 2313 * * * * * * 3671 1496 * * 121 0 * * * * * * 2952 0 0 P 122 1708 * * 3235 * * * * * * * * 767 * * * * * * * 122 0 * * * * * * 2801 0 0 V 123 * * * * * 2172 * * 3205 * * 3083 * * * * * 1345 * 2662 123 0 * * * * * * 2490 0 0 Q 124 * * * * * * * * * * * * * 324 2313 * * * * * 124 0 * * * * * * 2301 0 0 V 125 1624 * * * * * * * * * 2564 * * * * * * 981 * * 125 0 * * * * * * 2159 0 0 A 126 0 * * * * * * * * * * * * * * * * * * * 126 0 * * 0 * * * 1891 0 0 //