HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/1ac35dc7c09d918b/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/1ac35dc7c09d918b/query.hhm DATE Tue Jan 17 08:31:25 2012 LENG 70 match states, 70 columns in multiple alignment FILT 109 out of 516 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.6 EVD 0.4418 0.3918 SEQ >ss_pred CCEEEEEEEEEEECCCCEEEEECCCCCCEEEEEEHHCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEC >ss_conf 9716879999997888758696289984499993221554345788988899999877987677998989 >Consensus mxxxxxGxVkxfxxxkGfGFIxxddxxxdiFxHxsxixxxxxxxlxxGxxVxFxxxxxxkGxxAxxVxix >batch____ MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANVYLS >UniRef50_Q11EM9(127-188:194) Cold-shock protein, DNA-binding n=1 Tax=Chelativorans sp. BNC1 RepID=Q11EM9_MESSB E=0.0005 s/c=0.74 id=24% cov=90% ------GQVAQLYPNEDHGFLLTNEGSS-LYFHRNSLLQGDFDQLKVGDEVRYVEEVGDTGPLATKVRV- >UniRef50_Q8EG75(1-65:224) Cold shock domain family protein n=1 Tax=Shewanella oneidensis RepID=Q8EG75_SHEON E=5e-08 s/c=0.90 id=24% cov=94% ----MKGKVVSYLAAKKYGFIQGDDGESYFLHFSELLDKKDEGKLVKGSMVHFDPTPTPKGLAAKAISL- >UniRef50_Q2RY07(817-881:882) Cold-shock DNA-binding protein family n=2 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RY07_RHORT E=2e-06 s/c=0.83 id=23% cov=94% ---EIRGTVKHYDPIKGRGYIIPDGKGSDILIEKAVLKACGMGRLKKNDRVVVITKDQGGKPVAIDVR-- >UniRef50_A7BTS0(4-69:796) Secreted protein n=1 Tax=Beggiatoa sp. PS RepID=A7BTS0_9GAMM E=2e-06 s/c=0.81 id=24% cov=96% -TKMLTGTITTVLSNGRVAFISTPQSDKDVFVHVNEVEGVSM--LKSKMQLTFEIKQGPKGPQAYHARL- >UniRef50_Q1QDZ8(3-65:253) Cold-shock DNA-binding domain protein n=2 Tax=Psychrobacter RepID=Q1QDZ8_PSYCK E=2e-09 s/c=1.01 id=24% cov=77% -----SGKIKHWNSDKGYGFIDVDNQSEDVFFHIKSVRMAQ--PISKGQRVYFNSERNDK---------- >UniRef50_Q6ARQ9(3-71:195) Hypothetical cold-shock protein n=1 Tax=Desulfotalea psychrophila RepID=Q6ARQ9_DESPS E=1e-08 s/c=0.88 id=23% cov=99% -TVRLQGKIEKWVGERGFGFIKSEKSAKSIFVHISAFDRAISRAPRVGDTISYCLRTDHNGKtKAVDAII- >UniRef50_UPI00019088EC(89-155:233) cold shock protein n=1 Tax=Rhizobium etli CIAT 894 RepID=UPI00019088EC E=2e-06 s/c=0.79 id=22% cov=97% -TQRIRCVVEWFDRGLGYGFVKLADRDISAMLHKNALGPVSPYDIWEGDILVCELVEAEKGLSVEKVI-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 3498 * * 356 * * * * * * 2939 * * 1 0 * * * * * * 4497 0 0 S 2 2612 * * * * 4819 * * 4667 4699 * 4887 * * 3462 1623 1868 * * * 2 0 * * * * * * 5367 0 0 R 3 * * 3967 3159 4737 5220 * * 2662 5251 4886 5095 4810 4658 2789 3607 2664 4248 * * 3 0 * * * * * * 5730 0 0 K 4 * * * 3052 * * * 5600 1647 5571 3983 4332 * 5674 1577 * * 4300 * * 4 29 * 5657 * * * * 5957 0 0 M 5 6085 * * * 4514 * 5936 2069 5971 3064 2054 * * 4719 * 4622 5327 3534 * 3051 5 24 5935 * 1585 585 0 * 6352 1000 1000 T 6 5342 * * 4430 * * 5860 4280 2206 5187 6059 6229 * 2445 4099 3504 2262 5048 * 5736 6 0 * * * * * * 6440 0 0 G 7 5818 5909 * * * 120 * * * * * * * * * 6554 5376 6561 * * 7 0 * * * * * * 6682 0 0 I 8 6654 * * 5911 4087 * 6377 3008 2562 * 6123 5870 * 5216 3436 4375 1777 3247 * 6275 8 0 * * * * * * 6736 0 0 V 9 5699 6009 * * * * * 1861 * 4271 5161 * * * * * * 713 * * 9 0 * * * * * * 6738 0 0 K 10 6344 * 5130 4551 6461 * * 4806 1016 6718 * 5130 * 5872 3439 4585 3431 3425 * * 10 22 * 6027 * * * * 6738 0 0 T 11 6171 5093 * 5590 3607 5254 5787 * 4030 * 6685 6857 * 4161 3516 3146 3383 5462 1584 5519 11 16 * 6503 * * 1047 954 6730 0 1563 F 12 * 6111 * * 1115 * * 6331 * 4642 * * * * * 5760 * 4279 2384 2253 12 14 6680 * 2807 222 1024 977 6724 1000 1630 D 13 * 6472 1709 6501 4260 * 4941 4326 4587 4359 6488 2135 * 5235 6441 3220 * 4823 * 5196 13 29 6336 7093 0 * 0 * 6730 1000 1000 R 14 2886 7267 2736 4829 6841 5948 4525 * 4000 3810 6259 5329 3198 4441 3347 3274 5445 4626 * 6305 14 0 * * * * 0 * 6751 0 1000 K 15 3472 * 2748 2027 * 4300 * 5724 3562 5676 * 3731 6788 4750 5031 4655 3477 4941 5784 6715 15 0 * * * * * * 6758 0 0 S 16 5481 * 5418 3531 * 5763 * * 1110 6050 6220 4056 * 4994 2077 5100 * * * * 16 0 * * * * * * 6758 0 0 G 17 6036 6879 5346 6431 * 353 * * 5085 * 6226 4497 * 6839 4601 6722 6530 * * * 17 0 * * * * * * 6758 0 0 K 18 6867 5784 * * 1047 * 6378 6651 6491 * * * * * 6484 6431 * 5763 4875 1393 18 18 6343 * 1000 1000 * * 6758 1000 0 G 19 5763 * * * * 48 * * * * * * * * * 6150 * * * * 19 0 * * * * * * 6758 0 0 F 20 4824 5714 * * 357 * * * * 4421 * * * * * 6492 6270 6127 7072 3790 20 0 * * * * * * 6758 0 0 I 21 5515 * * * * * * 643 * 2755 * * * * * * 6226 2504 * * 21 43 * 5074 * * * * 6758 0 0 I 22 4824 6596 5128 2986 6293 * 5393 3841 3257 4530 * 4062 * 4136 3544 3634 2555 3587 * 6812 22 61 5919 5342 2130 374 0 * 6723 1515 2189 P 23 3625 6396 3701 5952 * 4298 5725 4771 * 4901 6840 6523 2155 4346 2940 2774 4244 4275 * * 23 9 7277 * 0 * 585 1585 6746 1000 2091 S 24 3747 * 1362 2771 6088 6561 6237 6780 5223 7398 * 3249 3370 6841 * 4913 5259 5759 6225 7016 24 76 5017 5633 1161 855 0 * 6760 2265 1000 D 25 3824 * 1262 4592 5587 2579 5366 * 4969 6205 * 3953 * 4887 6015 3918 4912 * * * 25 47 5593 6496 559 1638 * 0 6738 1686 1652 G 26 5821 6063 3984 4875 7239 1193 6560 6686 5466 6810 6787 4456 4967 4086 4168 4026 3263 * * 7039 26 122 5628 4031 951 1051 0 * 6749 1585 2249 R 27 5728 * 3638 2715 * 1685 5544 * 4201 * 6944 4134 3922 6228 4439 2757 6099 6855 * * 27 64 4985 6434 3620 122 206 2907 6757 2134 3326 K 28 4252 * 3795 2244 6764 4336 * 4736 2619 5914 6185 5254 4152 3966 3085 4312 4452 6084 * * 28 40 * 5191 * * 0 * 6733 0 1658 E 29 5813 * 1005 2404 * 6105 * * 7169 * * 4398 6432 5006 3753 4506 6934 5994 * 4593 29 23 7070 6931 0 * 0 * 6714 1000 2159 V 30 3647 5703 * * 3289 * 5641 1795 * 3542 6757 * * * 6218 * 6996 1760 * 3666 30 0 * * * * * 0 6749 0 1000 Q 31 * * * * 485 * * 6849 6386 3498 4737 * * 6476 5637 * * * 5432 3567 31 44 * 5052 * * * 0 6749 0 1000 V 32 4313 * * * 1698 * 5093 3472 * 2895 5448 * * * 5983 6108 6830 1619 * * 32 0 * * * * 917 1088 6717 0 2401 H 33 6719 * 6259 5522 5076 5788 490 * * 6851 6409 6808 4863 * 5330 5843 6631 5358 * 4175 33 10 * 7144 * * * 0 6738 0 1514 I 34 3250 * 5999 5441 3158 * 5404 2296 3502 4644 6184 * * 3308 4289 4128 6458 3649 5735 4165 34 0 * * * * 1488 636 6737 0 1947 S 35 4150 6393 5034 4610 * 5559 6934 * 3512 * * 2836 * 5851 3960 1388 2946 6682 * * 35 0 * * * * * 0 6737 0 1593 A 36 1794 6732 2922 3255 6004 5783 7129 4657 5928 4859 6822 3774 * 5604 5655 3267 4692 4142 * 6313 36 26 6819 6785 2322 322 * 0 6737 1000 1593 F 37 * * * * 2798 * * 1965 6841 1501 5166 * * * * 5369 * 2500 * 6752 37 79 5382 5093 2191 357 1627 564 6731 1960 1898 T 38 3700 * 4285 3109 5182 5994 4818 5685 2539 3597 * 6308 6050 3510 3511 3861 4678 4040 * 5003 38 102 5902 4277 0 * 275 2526 6734 1508 3023 P 39 4566 7147 2926 4089 4821 2902 6435 7206 2865 5948 4280 3810 4086 5093 3338 4137 5315 5756 6772 * 39 25 6810 6951 2585 263 0 * 6697 1000 3111 R 40 3561 4891 2648 2678 5263 4488 5704 4867 4418 5458 * 4064 5523 4895 4014 3809 4691 4051 6279 6393 40 85 * 4122 * * 0 * 6759 0 1000 D 41 4146 5094 3260 4176 6638 1625 4952 5798 5319 4772 6723 4340 4452 5182 5056 3175 5692 5958 * * 41 108 4319 5506 1607 574 890 1119 6708 2481 3122 A 42 3710 * 4882 3967 3569 4652 5686 5106 6938 2738 4671 6881 3782 5531 3928 5207 5199 4378 5517 2615 42 169 5892 3418 580 1595 641 1479 6731 1647 2788 E 43 5869 * 4196 3145 6382 4066 5200 6154 3432 5512 * * 4371 5736 1677 3634 4714 5274 4840 5136 43 16 * 6506 * * 1190 832 6649 0 3972 V 44 4503 7158 2794 5417 6746 4591 5518 6305 4389 3856 * 5643 3815 4306 4030 2396 2984 4365 * 6449 44 39 6121 6333 0 * 0 * 6685 1000 3328 L 45 6744 * 6308 * 6476 * * 2633 * 957 6509 * 2648 * * 5172 * 3577 * 6872 45 21 * 6108 * * 0 * 6771 0 1610 I 46 3280 4978 4733 3695 * 4890 6268 3587 2511 5520 * 4425 4824 3953 3791 3888 4386 4196 5523 6257 46 34 * 5422 * * 978 1023 6758 0 1593 P 47 3837 6589 4563 1968 * 6798 * 4230 3302 5619 * 5885 2671 4933 5035 3356 5842 3549 * * 47 32 6332 6723 2135 373 0 * 6752 1622 2503 G 48 5768 * 3936 6183 6684 470 * * 5756 * * 3272 * * 6634 5084 * * * 6764 48 0 * * * * * 0 6753 0 1000 L 49 4000 7098 2030 3205 * 6709 5257 5062 6480 4981 5358 5043 * 2210 5072 4227 3266 6600 * * 49 0 * * * * 0 * 6753 0 1000 R 50 4067 * 4323 3455 7375 * 4676 3878 4239 3947 6793 6806 4598 5308 1796 4066 3373 4656 * * 50 16 6485 * 1000 1000 * * 6758 1000 0 V 51 * 6435 * * * * * 2982 5714 3813 6199 * * * * * * 422 * 6411 51 0 * * * * * * 6758 0 0 E 52 5603 6790 5217 2134 * 6508 4771 4412 4343 4984 6806 6316 * 4784 3861 2552 2815 4125 6270 5031 52 0 * * * * * * 6758 0 0 F 53 5604 5005 * * 611 * * * * 5226 7194 * * * 5714 * * 4061 * 2464 53 25 5871 * 2369 310 * * 6758 1698 0 C 54 4844 5642 2661 1707 * 5734 6974 4467 3498 7108 * 5197 * 3770 4017 3822 4724 5117 * 6226 54 0 * * * * * * 6758 0 0 R 55 5543 5467 * 4640 4774 * * 2469 5883 1990 6599 * 3661 * 4969 5636 3851 2377 * 5224 55 0 * * * * * * 6719 0 0 V 56 3143 6454 4477 2344 6303 3040 5404 4229 4111 5618 6455 6599 * 4080 4442 4847 4363 2902 * * 56 14 6691 * 1000 1000 * * 6719 1000 0 N 57 5916 * 3912 2249 5128 5459 6677 6726 3306 4514 5309 4416 4015 2718 6065 4155 3951 4087 * 6539 57 18 6371 * 2000 415 * * 6649 1000 0 G 58 6022 * 2623 5848 6710 1586 6349 6495 7126 * * 3869 * 5480 5264 2968 2670 5058 * * 58 12 6897 * 0 * * * 6704 1000 0 L 59 3520 * 2808 2826 5151 5118 6768 * 3109 6449 * 5321 2578 3791 3379 4966 6036 5193 * * 59 74 4326 * 1447 659 * * 6704 2532 0 R 60 4898 * 4410 4702 * 4383 5558 * 1203 * 6928 4060 * 3914 2290 6760 5086 * * * 60 27 6379 7267 0 * * * 6711 1000 0 G 61 * * 5690 * * 254 * * 3670 * * * * * 6466 5066 6732 * 6248 * 61 106 3818 * 308 2381 0 * 6719 3316 1000 P 62 5512 * 6622 4308 4318 6747 6544 4492 4685 1958 4796 * 1648 * 3560 5961 5494 5587 * 7011 62 72 4358 * 380 2110 * * 6575 2638 0 T 63 4602 4563 * 3822 7186 6674 4135 4664 3410 4547 6974 6839 * 2190 2674 3526 4241 3971 * * 63 18 6363 * 0 * * * 6575 1000 0 A 64 275 5011 * * 5710 5228 * * * * * * * * * * * 3638 5912 * 64 0 * * * * * * 6575 0 0 A 65 3089 5423 6193 3667 4341 * 6587 3388 2814 4217 * 5895 * 4996 4627 4858 3761 2455 * 4782 65 0 * * * * * * 6544 0 0 N 66 3361 * 3001 4011 6260 6763 4884 * 3501 * * 1529 * 4237 3762 3731 6561 * 6359 * 66 0 * * * * * * 6541 0 0 V 67 4338 * * * * * * 1882 * 4839 * * * * * * * 634 * * 67 0 * * * * * * 6557 0 0 Y 68 5174 * 6510 4082 6228 * 3942 3136 2414 4680 * 6118 * 3944 2113 4244 5257 5137 * 3930 68 0 * * * * * * 6298 0 0 L 69 5179 * * * * 5639 * 1782 5484 1412 * * * * * * * 1925 * * 69 0 * * * * * * 5984 0 0 S 70 1969 * * * * * * * * * * * * * * 1306 1556 * * * 70 0 * * 0 * * * 4431 0 0 //