BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (70 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_UPI000190F4F4 cold shock protein (CspH) n=1 Tax=Salmone... 82 5e-15 UniRef50_P0A363 Cold shock-like protein cspB n=58 Tax=Enterobact... 69 3e-11 UniRef50_P36995 Cold shock-like protein cspB n=24 Tax=Bacteria R... 65 5e-10 UniRef50_P0A974 Cold shock-like protein cspE n=233 Tax=Gammaprot... 62 4e-09 UniRef50_P58726 Cold shock-like protein cspJ n=322 Tax=cellular ... 60 2e-08 UniRef50_P0A9Y8 Cold shock-like protein cspC n=125 Tax=Enterobac... 55 6e-07 UniRef50_B5Y9M2 Conserved domain protein n=20 Tax=Bacteria RepID... 55 8e-07 UniRef50_A9IR63 Cold shock-like protein n=13 Tax=cellular organi... 50 1e-05 UniRef50_P62171 Cold shock-like protein cspC n=85 Tax=Bacteria R... 49 4e-05 UniRef50_Q3AFQ5 Cold shock protein CspC n=14 Tax=Bacteria RepID=... 49 5e-05 UniRef50_A4TN10 Cold-shock DNA-binding protein family n=35 Tax=E... 47 2e-04 UniRef50_C4K358 RNA chaperone, transcription antiterminator n=3 ... 47 2e-04 UniRef50_Q5HPE0 Cold shock protein cspA n=113 Tax=Bacteria RepID... 46 3e-04 UniRef50_B4U902 Cold-shock DNA-binding domain protein n=9 Tax=Ba... 46 3e-04 UniRef50_C9KNJ1 Conserved domain protein n=1 Tax=Mitsuokella mul... 45 5e-04 UniRef50_O30875 Major cold shock protein n=98 Tax=cellular organ... 45 5e-04 UniRef50_C4Z3Q0 Cold shock protein (Beta-ribbon, CspA family) n=... 45 6e-04 UniRef50_D1S746 Cold-shock DNA-binding domain protein n=1 Tax=Mi... 45 8e-04 UniRef50_A4G7K9 Cold shock protein CspD n=3 Tax=Bacteria RepID=A... 44 0.001 UniRef50_C4WSK9 ACYPI003867 protein n=1 Tax=Acyrthosiphon pisum ... 44 0.001 UniRef50_A4FKV9 Putative DNA-binding protein n=1 Tax=Saccharopol... 44 0.001 UniRef50_O54310 Cold shock-like protein n=7 Tax=Bacteria RepID=C... 44 0.001 UniRef50_UPI0000D57810 PREDICTED: similar to CG9705 CG9705-PA n=... 44 0.002 UniRef50_A8QHS7 'Cold-shock' DNA-binding domain containing prote... 44 0.002 UniRef50_B1MZK9 Cold shock protein n=15 Tax=Bacteria RepID=B1MZK... 44 0.002 UniRef50_Q4KEW6 Cold shock protein capa n=14 Tax=Bacteria RepID=... 44 0.002 UniRef50_Q81DK5 Cold shock-like protein cspE n=713 Tax=Bacteria ... 44 0.002 UniRef50_Q56922 Major cold shock protein (Fragment) n=404 Tax=Ba... 44 0.002 UniRef50_Q11GE9 Cold-shock DNA-binding protein family n=10 Tax=A... 44 0.002 UniRef50_Q2LY24 Cold shock protein n=11 Tax=Bacteria RepID=Q2LY2... 43 0.003 UniRef50_C0WQD2 Possible cold-shock protein n=3 Tax=Lactobacillu... 43 0.003 UniRef50_Q816H3 Cold shock-like protein cspD n=370 Tax=Bacteria ... 43 0.003 UniRef50_UPI000051480C PREDICTED: similar to ypsilon schachtel C... 43 0.003 UniRef50_Q3IC55 Cold shock protein n=52 Tax=Bacteria RepID=Q3IC5... 43 0.003 UniRef50_B8C1C4 Cold-shock DNA-binding domain-containing protein... 43 0.004 UniRef50_P71478 Cold shock protein 1 n=20 Tax=Firmicutes RepID=C... 43 0.004 UniRef50_A0NEN6 AGAP006108-PA n=4 Tax=Culicimorpha RepID=A0NEN6_... 43 0.004 UniRef50_Q7NT55 Cold shock transcription regulator protein n=1 T... 43 0.004 UniRef50_B5HGK4 Cold shock protein n=10 Tax=Streptomyces RepID=B... 42 0.004 UniRef50_Q9AN51 Blr1947 protein n=2 Tax=Bradyrhizobium japonicum... 42 0.005 UniRef50_Q2P2A6 Major cold shock protein n=21 Tax=Gammaproteobac... 42 0.005 UniRef50_A7HXE8 Putative cold-shock DNA-binding domain protein n... 42 0.005 UniRef50_A5VJ42 Cold-shock DNA-binding protein family n=10 Tax=L... 42 0.006 UniRef50_Q47TE2 Cold-shock DNA-binding protein family n=9 Tax=Ac... 42 0.006 UniRef50_A9W6T1 Cold-shock protein DNA-binding n=32 Tax=Bacteria... 42 0.007 UniRef50_B4RGZ9 Cold-shock DNA-binding domain protein n=75 Tax=B... 42 0.007 UniRef50_O46173 Y-box protein n=14 Tax=cellular organisms RepID=... 42 0.008 UniRef50_A0R441 'Cold-shock' DNA-binding domain protein n=18 Tax... 42 0.008 UniRef50_P54584 Cold shock protein n=9 Tax=Bacteria RepID=CSP_ARTGO 41 0.009 UniRef50_O67327 Cold shock-like protein n=2 Tax=Bacteria RepID=C... 41 0.009 UniRef50_C5RAK7 Cold shock protein CspA n=1 Tax=Weissella parame... 41 0.009 UniRef50_C4QN73 Y box binding protein, putative n=4 Tax=Bilateri... 41 0.010 UniRef50_D1AYL8 Cold-shock DNA-binding domain protein n=3 Tax=ce... 41 0.011 UniRef50_A5BWB0 Putative uncharacterized protein n=1 Tax=Vitis v... 41 0.011 UniRef50_A2SIM9 Cold-shock DNA-binding protein family n=16 Tax=P... 41 0.014 UniRef50_C8P136 Conserved domain protein n=6 Tax=Bacteria RepID=... 40 0.016 UniRef50_D1C6U7 Cold-shock DNA-binding domain protein n=1 Tax=Sp... 40 0.017 UniRef50_Q2RQP4 Cold-shock DNA-binding protein family n=1 Tax=Rh... 40 0.018 UniRef50_B1Z823 Cold-shock DNA-binding domain protein n=34 Tax=A... 40 0.018 UniRef50_Q2LQ45 Cold shock protein n=49 Tax=Bacteria RepID=Q2LQ4... 40 0.020 UniRef50_C9NB66 Cold-shock DNA-binding domain protein n=1 Tax=St... 40 0.022 UniRef50_P41824 Y-box factor homolog n=1 Tax=Aplysia californica... 40 0.022 UniRef50_Q0SKK0 Cold shock protein n=1 Tax=Rhodococcus jostii RH... 40 0.023 UniRef50_Q0JY13 Cold shock protein, DNA-binding n=2 Tax=Burkhold... 40 0.024 UniRef50_D1BKC9 Cold shock domain protein CspD n=31 Tax=Bacteria... 40 0.024 UniRef50_A7BYF1 Putative uncharacterized protein n=1 Tax=Beggiat... 40 0.025 UniRef50_Q2W0B3 Cold shock protein n=3 Tax=Magnetospirillum RepI... 40 0.028 UniRef50_C4RFH3 DNA binding protein n=1 Tax=Micromonospora sp. A... 40 0.028 UniRef50_C1F531 Cold shock protein n=1 Tax=Acidobacterium capsul... 40 0.030 UniRef50_B9K345 CspA-like protein n=3 Tax=Agrobacterium RepID=B9... 40 0.031 UniRef50_C4QN75 Y box binding protein, putative n=10 Tax=cellula... 40 0.032 UniRef50_O65639 Glycine-rich protein n=10 Tax=cellular organisms... 40 0.033 UniRef50_B7PM92 PIN domain-containing RNA-binding protein, putat... 39 0.035 UniRef50_Q1DBV4 Cold-shock protein CspA n=10 Tax=cellular organi... 39 0.038 UniRef50_B3EP04 Cold-shock DNA-binding domain protein n=13 Tax=C... 39 0.040 UniRef50_UPI0001B4CA82 DNA-binding protein n=1 Tax=Streptomyces ... 39 0.043 UniRef50_A1S709 Cold-shock DNA-binding protein family n=6 Tax=ce... 39 0.043 UniRef50_A0ACJ4 Putative DNA-binding protein n=2 Tax=Streptomyce... 39 0.046 UniRef50_A4XHY2 Cold-shock DNA-binding protein family n=3 Tax=ce... 39 0.047 UniRef50_B0UEI2 Cold-shock DNA-binding domain protein n=11 Tax=A... 39 0.049 UniRef50_D0MDE8 Cold-shock DNA-binding domain protein n=1 Tax=Rh... 39 0.052 UniRef50_Q6PHF1 Calcium regulated heat stable protein 1 n=2 Tax=... 39 0.055 UniRef50_Q0BPU3 Cold shock protein n=2 Tax=Alphaproteobacteria R... 39 0.061 UniRef50_B9KKC8 Cold-shock DNA-binding protein family n=21 Tax=R... 39 0.064 UniRef50_D1A5P8 Cold-shock DNA-binding domain protein n=33 Tax=A... 39 0.068 UniRef50_B9JZ17 Cold shock protein n=106 Tax=Alphaproteobacteria... 38 0.081 UniRef50_A0PKZ5 Cold shock-like protein B CspB n=78 Tax=Actinomy... 38 0.083 UniRef50_A3BPB0 Putative uncharacterized protein n=4 Tax=Oryza s... 38 0.097 >UniRef50_UPI000190F4F4 cold shock protein (CspH) n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. E02-1180 RepID=UPI000190F4F4 Length = 59 Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 37/48 (77%), Positives = 41/48 (85%) Query: 23 PSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANVYLS 70 P DGRK+VQVHISA + E LIPG+RVEFCR+NGLRGPTAANVYLS Sbjct: 12 PPDGRKDVQVHISACRQHETEALIPGIRVEFCRINGLRGPTAANVYLS 59 >UniRef50_P0A363 Cold shock-like protein cspB n=58 Tax=Enterobacteriaceae RepID=CSPB_YEREN Length = 70 Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 35/67 (52%), Positives = 41/67 (61%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 MS KMTG+VK FD G GFI P+DG K+V VH SA D + L G VEF G + Sbjct: 1 MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQK 60 Query: 61 GPTAANV 67 GP+A NV Sbjct: 61 GPSAVNV 67 >UniRef50_P36995 Cold shock-like protein cspB n=24 Tax=Bacteria RepID=CSPB_ECOLI Length = 71 Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 42/70 (60%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 MS KMTG+VK F+ G GFI P DG K+V VH SA + L G +V F +G + Sbjct: 1 MSNKMTGLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDNYRTLFEGQKVTFSIESGAK 60 Query: 61 GPTAANVYLS 70 GP AANV ++ Sbjct: 61 GPAAANVIIT 70 >UniRef50_P0A974 Cold shock-like protein cspE n=233 Tax=Gammaproteobacteria RepID=CSPE_ECO57 Length = 69 Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 32/64 (50%), Positives = 38/64 (59%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 K+ G VK F+ G GFI P DG K+V VH SA + L G RVEF NG +GP+ Sbjct: 3 KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPS 62 Query: 64 AANV 67 AANV Sbjct: 63 AANV 66 >UniRef50_P58726 Cold shock-like protein cspJ n=322 Tax=cellular organisms RepID=CSPJ_SALTI Length = 70 Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 39/67 (58%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M+ K+TG+VK F+ + G GFI P DG K+V VH SA + L VEF G + Sbjct: 1 MTTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTLNENQEVEFSAEQGPK 60 Query: 61 GPTAANV 67 GP+A NV Sbjct: 61 GPSAVNV 67 >UniRef50_P0A9Y8 Cold shock-like protein cspC n=125 Tax=Enterobacteriaceae RepID=CSPC_ECO57 Length = 69 Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 36/64 (56%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 K+ G VK F+ G GFI P+DG K+V VH SA + L G VEF +G +GP Sbjct: 3 KIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPA 62 Query: 64 AANV 67 A NV Sbjct: 63 AVNV 66 >UniRef50_B5Y9M2 Conserved domain protein n=20 Tax=Bacteria RepID=B5Y9M2_COPPD Length = 89 Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 37/66 (56%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 ++ TG VK FD K G GFI DG +V VH SA + L G +VEF VNG +G Sbjct: 21 TKMYTGTVKWFDAKKGYGFITRDDGEGDVFVHFSAIEGNGFKSLDQGDKVEFEIVNGPKG 80 Query: 62 PTAANV 67 P AA V Sbjct: 81 PQAAKV 86 >UniRef50_A9IR63 Cold shock-like protein n=13 Tax=cellular organisms RepID=A9IR63_BORPD Length = 68 Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 36/65 (55%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TGIVK F+ + G GFI P DG K++ H S + + L RV F G +GP+A Sbjct: 3 TGIVKWFNAEKGYGFITPDDGSKDLFAHYSEISSEGYKSLQENQRVTFEVGQGPKGPSAK 62 Query: 66 NVYLS 70 N+ +S Sbjct: 63 NIKVS 67 >UniRef50_P62171 Cold shock-like protein cspC n=85 Tax=Bacteria RepID=CSPC_BACCR Length = 65 Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/63 (47%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 M G VK F+ + G GFI DG +V VH SA + L G +VEF V+G RGP A Sbjct: 1 MQGRVKWFNAEKGFGFIEREDG-DDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQA 59 Query: 65 ANV 67 ANV Sbjct: 60 ANV 62 >UniRef50_Q3AFQ5 Cold shock protein CspC n=14 Tax=Bacteria RepID=Q3AFQ5_CARHZ Length = 65 Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/63 (49%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 M G VK FD G GFI DG +V VH SA + L G RVEF V G RGP A Sbjct: 1 MQGKVKWFDPAKGYGFIEREDG-GDVFVHFSAIKGNGFKTLEEGQRVEFNIVEGTRGPQA 59 Query: 65 ANV 67 A+V Sbjct: 60 ADV 62 >UniRef50_A4TN10 Cold-shock DNA-binding protein family n=35 Tax=Enterobacteriaceae RepID=A4TN10_YERPP Length = 69 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M+ KM G VK F++ G GFI P DG +V V+ +A + L G VEF + Sbjct: 1 MTLKM-GRVKWFNQSEGYGFISPHDGGSDVYVNKTAIANTKNKSLNEGQDVEFSTYRSIH 59 Query: 61 GPTAANV 67 GP+AA+V Sbjct: 60 GPSAADV 66 >UniRef50_C4K358 RNA chaperone, transcription antiterminator n=3 Tax=Enterobacteriaceae RepID=C4K358_HAMD5 Length = 69 Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 33/61 (54%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G VK FD+ +G GFI P DG ++ VH +A + LI G VEF GP+A + Sbjct: 6 GKVKWFDKIAGYGFISPEDGGLDIYVHKAAIANIKDKSLIAGQDVEFSYRVSFHGPSAED 65 Query: 67 V 67 V Sbjct: 66 V 66 >UniRef50_Q5HPE0 Cold shock protein cspA n=113 Tax=Bacteria RepID=CSPA_STAEQ Length = 66 Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G VK F+ + G GFI +G +V VH SA + L G VEF V G RGP AAN Sbjct: 4 GTVKWFNAEKGFGFI-EVEGENDVFVHFSAINQEGYKSLEEGQSVEFEVVEGDRGPQAAN 62 Query: 67 V 67 V Sbjct: 63 V 63 >UniRef50_B4U902 Cold-shock DNA-binding domain protein n=9 Tax=Bacteria RepID=B4U902_HYDS0 Length = 71 Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTP--RDAEVLIPGLRVEFCRVNGLRGP 62 +TG VK F ++ G GF+ D + +V VH SA P + + L+ G RVEF +GP Sbjct: 3 ITGTVKWFSKEKGYGFLTRDDNQGDVFVHFSAIDPNRQGFKTLVQGQRVEFEVDQDSKGP 62 Query: 63 TAANV 67 A NV Sbjct: 63 RAKNV 67 >UniRef50_C9KNJ1 Conserved domain protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNJ1_9FIRM Length = 66 Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 M G VK F + G GFI +G +V VH SA + L G VEF V G RGP A Sbjct: 1 MVGKVKWFSPEKGYGFI-AREGGDDVFVHFSAIQDEGFKTLNEGQDVEFEIVEGARGPQA 59 Query: 65 ANV 67 ANV Sbjct: 60 ANV 62 >UniRef50_O30875 Major cold shock protein n=98 Tax=cellular organisms RepID=CSPA_MICLC Length = 67 Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 32/61 (52%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G VK F+ + G GFI P D +V VH SA + L RVEF +G +G AAN Sbjct: 4 GTVKWFNAEKGYGFIAPEDNSADVFVHFSAIQGNGFKELQENDRVEFETQDGPKGLQAAN 63 Query: 67 V 67 V Sbjct: 64 V 64 >UniRef50_C4Z3Q0 Cold shock protein (Beta-ribbon, CspA family) n=10 Tax=Bacteria RepID=C4Z3Q0_EUBE2 Length = 84 Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 +M G VK F+ + G GFI G K+V VH S + L G +VEF G +GP Sbjct: 19 EMKGTVKWFNNQKGYGFISDESG-KDVFVHYSGLNMEGFKSLEEGAQVEFDVTEGAKGPQ 77 Query: 64 AANV 67 A NV Sbjct: 78 ATNV 81 >UniRef50_D1S746 Cold-shock DNA-binding domain protein n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1S746_9ACTO Length = 165 Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 +TG V FD G GFI P DG +V VH + D L PG+ VE+ V RGP A Sbjct: 8 LTGKVVRFDEVRGYGFIAPDDGSDDVFVHANMLDG-DKWALTPGVPVEYDAVETERGPKA 66 Query: 65 ANVYLS 70 V +S Sbjct: 67 VLVRVS 72 >UniRef50_A4G7K9 Cold shock protein CspD n=3 Tax=Bacteria RepID=A4G7K9_HERAR Length = 67 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 32/63 (50%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 TG VK F+ G GFI P G +++ H SA T + L G +V F G +G A Sbjct: 2 QTGTVKWFNDSKGFGFITPDSGGEDLFAHFSAITMEGFKTLKEGQKVSFEVTQGPKGKQA 61 Query: 65 ANV 67 +N+ Sbjct: 62 SNI 64 >UniRef50_C4WSK9 ACYPI003867 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WSK9_ACYPI Length = 305 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLI----PGLRVEFCRV 56 +S K+TG+VK F+ KSG GFI +D ++++ VH SA + + ++ G VEF V Sbjct: 24 ISVKVTGVVKWFNVKSGYGFINRNDTKEDIFVHQSAIIKNNPKKIVRSVGDGETVEFDVV 83 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 84 EGEKGHEAANV 94 >UniRef50_A4FKV9 Putative DNA-binding protein n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FKV9_SACEN Length = 150 Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 33/64 (51%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG V FD G GFI P G ++V +H S EVL G+RVEF V G +G A Sbjct: 3 TGTVVRFDGIKGYGFIAPDAGGEDVFLHASILDEELKEVLRGGMRVEFEAVPGNQGTKAM 62 Query: 66 NVYL 69 V L Sbjct: 63 TVNL 66 >UniRef50_O54310 Cold shock-like protein n=7 Tax=Bacteria RepID=CSP_THEMA Length = 66 Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 M G VK FD K G GFI +G +V VH SA + L G VEF G +GP A Sbjct: 1 MRGKVKWFDSKKGYGFITKDEGG-DVFVHWSAIEMEGFKTLKEGQVVEFEIQEGKKGPQA 59 Query: 65 ANV 67 A+V Sbjct: 60 AHV 62 >UniRef50_UPI0000D57810 PREDICTED: similar to CG9705 CG9705-PA n=1 Tax=Tribolium castaneum RepID=UPI0000D57810 Length = 121 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 2/51 (3%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEF 53 + + G +K+F R+ G GFI P DG +++ VHIS D + IPG RV++ Sbjct: 40 QNLYGEIKSFCREKGHGFITPEDGSEDIFVHISDI--EDEYIPIPGDRVKY 88 >UniRef50_A8QHS7 'Cold-shock' DNA-binding domain containing protein n=4 Tax=cellular organisms RepID=A8QHS7_BRUMA Length = 290 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++R + G VK F+ K+G GFI +D ++ VH +A T + L G +VEF V Sbjct: 54 VARHIQGTVKWFNVKNGYGFINRADTGDDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVV 113 Query: 57 NGLRGPTAANV 67 G +GP AANV Sbjct: 114 EGQKGPEAANV 124 >UniRef50_B1MZK9 Cold shock protein n=15 Tax=Bacteria RepID=B1MZK9_LEUCK Length = 74 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TGIVK + ++ G G+I P G ++V VH + + L G +V + V G + P AA Sbjct: 3 TGIVKIWQKERGYGYITPDAGGEDVFVHFNGIDMPGFKALKQGEKVSYVLVQGYKAPQAA 62 Query: 66 NV 67 V Sbjct: 63 QV 64 >UniRef50_Q4KEW6 Cold shock protein capa n=14 Tax=Bacteria RepID=Q4KEW6_PSEF5 Length = 91 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 32/67 (47%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 MS + TG VK F+ + G GFI P G ++ VH A + L G V F G + Sbjct: 22 MSNRQTGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIESDGFKSLKEGQTVSFVAEKGQK 81 Query: 61 GPTAANV 67 G AA V Sbjct: 82 GMQAAQV 88 >UniRef50_Q81DK5 Cold shock-like protein cspE n=713 Tax=Bacteria RepID=CSPE_BACCR Length = 67 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 +TG VK F+ + G GFI +DG +V VH SA T + L G V F G RGP A Sbjct: 3 LTGKVKWFNSEKGFGFIEVADGN-DVFVHFSAITGDGFKSLDEGQEVSFEVEEGNRGPQA 61 Query: 65 ANV 67 NV Sbjct: 62 KNV 64 >UniRef50_Q56922 Major cold shock protein (Fragment) n=404 Tax=Bacteria RepID=CSPA_YEREN Length = 46 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 26/44 (59%) Query: 17 GKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 G GFI P+DG K+V VH SA D + L G +VEF NG + Sbjct: 3 GFGFITPADGSKDVFVHFSAIQSNDFKTLDEGQKVEFSIENGAK 46 >UniRef50_Q11GE9 Cold-shock DNA-binding protein family n=10 Tax=Alphaproteobacteria RepID=Q11GE9_MESSB Length = 70 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 6/66 (9%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEF----CRVNGLRG 61 TG VK F+ G GFI P +G+K+V VHISA L+ G +V F R+ +G Sbjct: 4 TGTVKFFNATKGFGFITPDNGQKDVFVHISAVEASGMRSLVDGQKVSFDVEPDRMG--KG 61 Query: 62 PTAANV 67 P A N+ Sbjct: 62 PKAVNL 67 >UniRef50_Q2LY24 Cold shock protein n=11 Tax=Bacteria RepID=Q2LY24_SYNAS Length = 132 Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Query: 2 SRKMT-GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 S KM+ G VK F+ G GFI +G +V VH SA + L G RV F V G + Sbjct: 64 SYKMSEGTVKWFNASKGFGFIAQDNGN-DVFVHFSAIKMEGYKALEEGARVRFDVVKGNK 122 Query: 61 GPTAANVYL 69 GP A NV L Sbjct: 123 GPAADNVEL 131 >UniRef50_C0WQD2 Possible cold-shock protein n=3 Tax=Lactobacillus RepID=C0WQD2_LACBU Length = 93 Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 + + G VKT++ K+G GFI G + +AF D ++PG+RV + V G +GP Sbjct: 22 KMLYGKVKTYNAKNGFGFITQDQG-DNLFFFKNAFHGEDYSRIVPGIRVSYVVVEGQKGP 80 Query: 63 TAA 65 AA Sbjct: 81 QAA 83 >UniRef50_Q816H3 Cold shock-like protein cspD n=370 Tax=Bacteria RepID=CSPD_BACCR Length = 66 Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 TG VK F+ + G GFI +G +V VH SA + L G V F V G RGP A Sbjct: 2 QTGKVKWFNSEKGFGFI-EVEGGDDVFVHFSAIQGDGFKTLEEGQEVSFEIVEGNRGPQA 60 Query: 65 ANV 67 ANV Sbjct: 61 ANV 63 >UniRef50_UPI000051480C PREDICTED: similar to ypsilon schachtel CG5654-PA n=2 Tax=Apocrita RepID=UPI000051480C Length = 279 Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAF---TPRDA-EVLIPGLRVEFCRV 56 ++ K+TG VK F+ KSG GFI +D +++V VH SA PR A + G VEF V Sbjct: 20 IANKVTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVV 79 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 80 IGEKGHEAANV 90 >UniRef50_Q3IC55 Cold shock protein n=52 Tax=Bacteria RepID=Q3IC55_PSEHT Length = 68 Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK F+ G GFI G +V H SA T + L G RV+F G +GP A Sbjct: 5 TGSVKWFNEAKGFGFIEQESG-PDVFAHFSAITSDGFKTLAEGQRVQFTVTQGQKGPQAE 63 Query: 66 NV 67 N+ Sbjct: 64 NI 65 >UniRef50_B8C1C4 Cold-shock DNA-binding domain-containing protein n=1 Tax=Thalassiosira pseudonana RepID=B8C1C4_THAPS Length = 136 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/50 (48%), Positives = 27/50 (54%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEF 53 K+ G VK FD K G GF++P DG EV VH SA L G VEF Sbjct: 41 KIKGTVKWFDAKKGFGFLVPDDGSAEVFVHHSAIHANGFRSLGDGEVVEF 90 >UniRef50_P71478 Cold shock protein 1 n=20 Tax=Firmicutes RepID=CSP1_LACPL Length = 66 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 G VK F+ G GFI DG +V VH SA + L G +V F + RGP AA Sbjct: 3 NGTVKWFNADKGYGFITGEDGN-DVFVHFSAIQTDGFKTLEEGQKVTFDEESSDRGPQAA 61 Query: 66 NV 67 NV Sbjct: 62 NV 63 >UniRef50_A0NEN6 AGAP006108-PA n=4 Tax=Culicimorpha RepID=A0NEN6_ANOGA Length = 402 Score = 42.7 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLI----PGLRVEFCRV 56 ++ K+TG+VK F+ KSG GFI D +++V VH SA + + + G +VEF V Sbjct: 84 IATKVTGVVKWFNVKSGYGFINRGDTQEDVFVHQSAIARNNPKKAVRSVGDGEQVEFDVV 143 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 144 IGEKGNEAANV 154 >UniRef50_Q7NT55 Cold shock transcription regulator protein n=1 Tax=Chromobacterium violaceum RepID=Q7NT55_CHRVO Length = 110 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 32/67 (47%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 ++ TG VK F+ G GFI P +G +V H S + L RV F V G + Sbjct: 41 FNKMATGTVKWFNDSKGFGFITPDEGGDDVFAHFSQINAKGFRSLAENQRVSFDIVEGPK 100 Query: 61 GPTAANV 67 G A+N+ Sbjct: 101 GKQASNI 107 >UniRef50_B5HGK4 Cold shock protein n=10 Tax=Streptomyces RepID=B5HGK4_STRPR Length = 67 Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 +G+VK F+ + G GFI G +V H S + L+ G +V F G +GPTA Sbjct: 3 SGVVKWFNAEKGFGFIEQDGGGPDVFAHYSNIAAQGFRELLEGQKVNFDIAQGQKGPTAE 62 Query: 66 NV 67 N+ Sbjct: 63 NI 64 >UniRef50_Q9AN51 Blr1947 protein n=2 Tax=Bradyrhizobium japonicum RepID=Q9AN51_BRAJA Length = 120 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 30/59 (50%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 G VK F+ G GF+ P DG K+V VHISA L+ G +V + V G AA Sbjct: 56 GTVKWFNPTKGYGFVAPDDGGKDVFVHISAVEKAGYTSLVEGAKVGYELVTNRSGKQAA 114 >UniRef50_Q2P2A6 Major cold shock protein n=21 Tax=Gammaproteobacteria RepID=Q2P2A6_XANOM Length = 69 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 MS +M GIVK F+ G GFI P G ++ VH A + L G +V F V G + Sbjct: 1 MSERMNGIVKWFNDAKGFGFITPESG-PDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQK 59 Query: 61 GPTAANV 67 G A V Sbjct: 60 GMQADQV 66 >UniRef50_A7HXE8 Putative cold-shock DNA-binding domain protein n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HXE8_PARL1 Length = 199 Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 34/67 (50%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 +S ++TG+VK FD G GFIIP +G +V VH+S E L G V V + Sbjct: 34 VSFEITGVVKWFDAVKGYGFIIPENGGDDVLVHLSCLKQAGLEALDEGTTVTCEAVRRPK 93 Query: 61 GPTAANV 67 G A V Sbjct: 94 GAQAIRV 100 >UniRef50_A5VJ42 Cold-shock DNA-binding protein family n=10 Tax=Lactobacillus RepID=A5VJ42_LACRD Length = 67 Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 3/64 (4%) Query: 5 MTGIVKTFDRKSGKGFI-IPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 + G VK+FD + G GFI +P +G E+ VH S +L P V V G +GP Sbjct: 2 LKGKVKSFDEQKGWGFITVPHEG--EIFVHYSGIEGTRRRILHPDEEVSLVIVQGQKGPQ 59 Query: 64 AANV 67 AA+V Sbjct: 60 AAHV 63 >UniRef50_Q47TE2 Cold-shock DNA-binding protein family n=9 Tax=Actinobacteria (class) RepID=Q47TE2_THEFY Length = 127 Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust. Identities = 29/64 (45%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK +D G GF+ DG EV +H SA P L PG RVEF V G +G A Sbjct: 3 TGKVKWYDAGKGFGFLTKDDG-GEVFLHASALPP-GTTTLRPGQRVEFGIVEGRKGTQAL 60 Query: 66 NVYL 69 V L Sbjct: 61 QVRL 64 >UniRef50_A9W6T1 Cold-shock protein DNA-binding n=32 Tax=Bacteria RepID=A9W6T1_METEP Length = 281 Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 S +MTG VK +D G GF+ +DG K+V VH SA + + L G +V V G +G Sbjct: 212 SVEMTGTVKWYDPAKGFGFVSVNDGGKDVFVHRSALSRAGLDSLAEGQQVTLGVVEGQKG 271 Query: 62 PTAANV 67 A+++ Sbjct: 272 REASSI 277 >UniRef50_B4RGZ9 Cold-shock DNA-binding domain protein n=75 Tax=Bacteria RepID=B4RGZ9_PHEZH Length = 250 Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 30/53 (56%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEF 53 + R +G VK F+ G GFI P DG ++V VHISA + L G +VE+ Sbjct: 53 LRRMASGTVKWFNTAKGFGFIQPDDGGQDVFVHISAVAQAGLDALNEGDQVEY 105 >UniRef50_O46173 Y-box protein n=14 Tax=cellular organisms RepID=O46173_DROME Length = 359 Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 3/67 (4%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAF--TPRDA-EVLIPGLRVEFCRVNGLR 60 K+TG VK F+ KSG GFI +D R++V VH SA P+ A + G VEF V G + Sbjct: 62 KVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIANNPKKAVRSVGDGEVVEFDVVIGEK 121 Query: 61 GPTAANV 67 G AANV Sbjct: 122 GNEAANV 128 >UniRef50_A0R441 'Cold-shock' DNA-binding domain protein n=18 Tax=Actinomycetales RepID=A0R441_MYCS2 Length = 149 Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 2/64 (3%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK +D + G GF+ DG ++V V SA P E L G RVEF G RGP A Sbjct: 16 TGKVKWYDAEKGFGFLSQEDG-EDVYVRSSAL-PAGVEALKSGQRVEFGVAAGRRGPQAL 73 Query: 66 NVYL 69 ++ L Sbjct: 74 SLKL 77 >UniRef50_P54584 Cold shock protein n=9 Tax=Bacteria RepID=CSP_ARTGO Length = 67 Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 30/63 (47%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G VK F+ + G GFI P D +V VH S + L RV+F G +GP A Sbjct: 4 GTVKWFNAEKGFGFITPDDSDGDVFVHYSEIQTGGFKTLDENARVQFEIGQGAKGPQATG 63 Query: 67 VYL 69 V L Sbjct: 64 VTL 66 >UniRef50_O67327 Cold shock-like protein n=2 Tax=Bacteria RepID=CSP_AQUAE Length = 70 Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 29/61 (47%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G VK F + G GFI D +V VH + + L G +VEF V +GP A N Sbjct: 5 GTVKWFSKDKGYGFITREDTNADVFVHFTDIQMEGFKTLQKGQKVEFDVVEDTKGPRAKN 64 Query: 67 V 67 V Sbjct: 65 V 65 >UniRef50_C5RAK7 Cold shock protein CspA n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RAK7_WEIPA Length = 69 Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 3/66 (4%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAF-TPRDAEVLIPGLRVEFCRVNGLRG 61 K++G VKT+ G GFI G +V VH SA TPR ++ + G V+ V G+RG Sbjct: 2 EKISGYVKTWQSDKGFGFI-ELKGEDDVFVHFSAIQTPRVRDLTV-GQEVKLVVVQGIRG 59 Query: 62 PTAANV 67 P AA V Sbjct: 60 PQAAAV 65 >UniRef50_C4QN73 Y box binding protein, putative n=4 Tax=Bilateria RepID=C4QN73_SCHMA Length = 167 Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAE----VLIPGLRVEFCRV 56 M ++ G+VK F+ K+G GFI D ++ VH SA + + E L G VEF V Sbjct: 22 MEERVKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVV 81 Query: 57 NGLRGPTAANV 67 G +G A+ V Sbjct: 82 EGDKGDEASEV 92 >UniRef50_D1AYL8 Cold-shock DNA-binding domain protein n=3 Tax=cellular organisms RepID=D1AYL8_STRM9 Length = 65 Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 M G VK F+ K G GFI DG K+ +H S + + G VEF +G +GP A Sbjct: 1 MLGKVKWFNEKKGFGFISGEDG-KDYFLHFSKINKGGFKTVNEGEEVEFDIEDGEKGPQA 59 Query: 65 ANV 67 NV Sbjct: 60 TNV 62 >UniRef50_A5BWB0 Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=A5BWB0_VITVI Length = 189 Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 33/64 (51%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 S++ TG VK F + G GFI P DG +++ VH ++ L G VEF +G G Sbjct: 4 SKRSTGTVKWFSGQKGFGFIAPDDGGEDLFVHQTSIRSDGFRTLSEGETVEFAVDHGEDG 63 Query: 62 PTAA 65 T A Sbjct: 64 RTKA 67 >UniRef50_A2SIM9 Cold-shock DNA-binding protein family n=16 Tax=Proteobacteria RepID=A2SIM9_METPP Length = 89 Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 31/63 (49%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 + G VK F+ G GFI P G ++V H SA L G RV F V+G +G A Sbjct: 2 VNGTVKWFNDAKGFGFIEPEGGGEDVFAHFSAILMDGFRTLKQGARVSFELVDGPKGKLA 61 Query: 65 ANV 67 N+ Sbjct: 62 QNI 64 >UniRef50_C8P136 Conserved domain protein n=6 Tax=Bacteria RepID=C8P136_ERYRH Length = 66 Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK F+ + G GFI +G +++ VH SA + L G V F V G RG AA Sbjct: 3 TGKVKFFNAEKGYGFITI-EGGQDIFVHYSAIVADGYKTLEEGQEVSFEVVEGPRGEQAA 61 Query: 66 NV 67 NV Sbjct: 62 NV 63 >UniRef50_D1C6U7 Cold-shock DNA-binding domain protein n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6U7_SPHTD Length = 77 Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK +D + G GFI DG ++ VH SA + L G RVEF + +GP A Sbjct: 3 TGTVKWYDPEKGYGFIARDDGDSDLFVHRSAIS---GSELNEGDRVEFDVTSSPKGPRAE 59 Query: 66 NVYLS 70 +V ++ Sbjct: 60 HVRVT 64 >UniRef50_Q2RQP4 Cold-shock DNA-binding protein family n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RQP4_RHORT Length = 70 Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK F+ + G GFI P DG + VHISA R ++ PG R R R P A+ Sbjct: 3 TGTVKWFNVQKGFGFIAPDDGGSDAFVHISAVE-RSSDRSPPGYRCRESRDRKRRWPGAS 61 Query: 66 NVY 68 + Sbjct: 62 RRH 64 >UniRef50_B1Z823 Cold-shock DNA-binding domain protein n=34 Tax=Alphaproteobacteria RepID=B1Z823_METPB Length = 69 Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 27/48 (56%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEF 53 TG VK F+ G GFI P +G K+V VHISA L+ G ++ + Sbjct: 3 TGTVKWFNETKGYGFIQPDNGGKDVFVHISAVERAGLRNLVEGQKISY 50 >UniRef50_Q2LQ45 Cold shock protein n=49 Tax=Bacteria RepID=Q2LQ45_SYNAS Length = 90 Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G VK F+ + G GFI +G +V VH SA + L G RV F G +GP A N Sbjct: 28 GKVKWFNEQKGFGFIEKDEG-GDVFVHYSAIQSSGFKTLYEGQRVSFEVQTGQKGPAAVN 86 Query: 67 V 67 V Sbjct: 87 V 87 >UniRef50_C9NB66 Cold-shock DNA-binding domain protein n=1 Tax=Streptomyces flavogriseus ATCC 33331 RepID=C9NB66_9ACTO Length = 70 Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 31/64 (48%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G V+ F + G G+I PS G E+ VH SA L+ G V F V RGP A Sbjct: 4 GTVQVFSAEKGYGYIRPSTGGPEIIVHFSAIVEACPVGLVAGQTVSFDIVQRRRGPEAER 63 Query: 67 VYLS 70 V +S Sbjct: 64 VQIS 67 >UniRef50_P41824 Y-box factor homolog n=1 Tax=Aplysia californica RepID=YBOXH_APLCA Length = 253 Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 4/68 (5%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLI----PGLRVEFCRVNGL 59 +++G VK F+ KSG GFI D +++V VH +A + + G +VEF V G Sbjct: 32 QVSGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGE 91 Query: 60 RGPTAANV 67 +G AANV Sbjct: 92 KGNEAANV 99 >UniRef50_Q0SKK0 Cold shock protein n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0SKK0_RHOSR Length = 119 Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEF--CRVN 57 TG V+ F+ + G GF+ P+DG ++ VH+S +L G RV F CR Sbjct: 55 TGTVRWFNAEQGFGFLAPADGSDDIFVHVSEIAGDGHRILEEGQRVSFAVCRTE 108 >UniRef50_Q0JY13 Cold shock protein, DNA-binding n=2 Tax=Burkholderiaceae RepID=Q0JY13_RALEH Length = 98 Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 31/63 (49%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 TGIVK F+ G GFI P G ++ H S + L RV+F NG +G A Sbjct: 19 QTGIVKWFNDAKGFGFIKPDAGGDDLFAHFSEIRADGFKSLQENQRVQFEVKNGPKGLQA 78 Query: 65 ANV 67 AN+ Sbjct: 79 ANI 81 >UniRef50_D1BKC9 Cold shock domain protein CspD n=31 Tax=Bacteria RepID=D1BKC9_SANKS Length = 317 Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 +R G+V +D + G GFI P G ++ VH+S R+ + L G RV F RG Sbjct: 251 ARGGEGVVARYDAERGFGFITPDSGGPDLFVHVSVV--REGQELYEGDRVRFQVRQSDRG 308 Query: 62 PTAANVYLS 70 P A V L+ Sbjct: 309 PQADRVDLA 317 >UniRef50_A7BYF1 Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7BYF1_9GAMM Length = 189 Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 M GIV FD+K G GFI ++V VH+ R+ + L PG +VEF +G +A Sbjct: 1 MEGIVVKFDKKRGFGFIRSDKFSEDVFVHLK--NIREQQSLSPGQKVEFDTEQTDKGLSA 58 Query: 65 ANV 67 NV Sbjct: 59 INV 61 >UniRef50_Q2W0B3 Cold shock protein n=3 Tax=Magnetospirillum RepID=Q2W0B3_MAGSA Length = 200 Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 33/68 (48%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 + + G+VK F + G GF+ G K+V VH+ A + L G RV GL+G Sbjct: 132 TETVEGVVKFFSAEKGFGFVACDQGGKDVFVHVKALERSGIKTLESGQRVRVTTTLGLKG 191 Query: 62 PTAANVYL 69 P A V + Sbjct: 192 PQADTVAI 199 >UniRef50_C4RFH3 DNA binding protein n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RFH3_9ACTO Length = 150 Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 +TG V FD G GFI P G +V VH + D L PG+ VE+ V RGP A Sbjct: 2 LTGRVVRFDEVRGYGFIAPDGGGDDVFVHANTVD-GDKWALGPGVPVEYEAVENERGPKA 60 Query: 65 ANV 67 V Sbjct: 61 LTV 63 >UniRef50_C1F531 Cold shock protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F531_ACIC5 Length = 87 Score = 39.7 bits (91), Expect = 0.030, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 K G+VK F+ G GFI S G ++V VH SA + L G VEF G +G Sbjct: 21 KENGVVKWFNGAKGYGFIQRSTG-EDVFVHFSAIQDSGYKTLNEGEAVEFECQQGPKGLN 79 Query: 64 AANV 67 AANV Sbjct: 80 AANV 83 >UniRef50_B9K345 CspA-like protein n=3 Tax=Agrobacterium RepID=B9K345_AGRVS Length = 99 Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 27/49 (55%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFC 54 TG +K FD G GFI DG +V +H+S T + L PG+R+ + Sbjct: 3 TGKLKWFDTTKGYGFITSDDGGPDVFLHLSKVTEANLPTLQPGVRLRYV 51 >UniRef50_C4QN75 Y box binding protein, putative n=10 Tax=cellular organisms RepID=C4QN75_SCHMA Length = 231 Score = 39.7 bits (91), Expect = 0.032, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLR----VEFCRV 56 M ++ G+VK F+ K+G GFI D ++ VH SA + + E L L+ VEF V Sbjct: 22 MEERVKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVV 81 Query: 57 NGLRGPTAANV 67 G +G A+ V Sbjct: 82 EGDKGDEASEV 92 >UniRef50_O65639 Glycine-rich protein n=10 Tax=cellular organisms RepID=O65639_ARATH Length = 299 Score = 39.7 bits (91), Expect = 0.033, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 28/62 (45%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 + TG V F+ G GFI P DG E+ VH S+ L G VEF G G T Sbjct: 10 RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69 Query: 64 AA 65 A Sbjct: 70 KA 71 >UniRef50_B7PM92 PIN domain-containing RNA-binding protein, putative n=2 Tax=Ixodes scapularis RepID=B7PM92_IXOSC Length = 315 Score = 39.3 bits (90), Expect = 0.035, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLI----PGLRVEFCRV 56 ++ ++ G VK F+ K+G GFI +D R+++ VH +A T + + ++ G VEF V Sbjct: 13 LAERVLGTVKWFNVKNGYGFINRNDTREDIFVHQTAITRNNPQKIMRSVGEGETVEFDVV 72 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 73 VGEKGREAANV 83 >UniRef50_Q1DBV4 Cold-shock protein CspA n=10 Tax=cellular organisms RepID=Q1DBV4_MYXXD Length = 68 Score = 39.3 bits (90), Expect = 0.038, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 29/62 (46%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK F+ G GFI DG +V H +A L G +VEF G +G A Sbjct: 3 TGTVKWFNDAKGFGFIAQDDGGADVFCHHTAIQTDGFRTLAEGQKVEFETRKGPKGLQAE 62 Query: 66 NV 67 NV Sbjct: 63 NV 64 >UniRef50_B3EP04 Cold-shock DNA-binding domain protein n=13 Tax=Chlorobiaceae RepID=B3EP04_CHLPB Length = 96 Score = 39.3 bits (90), Expect = 0.040, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA-EVLIPGLRVEFCRVNGL 59 MSRK VK FD K G GFI+ DG +++ VH SA + +VL VEF Sbjct: 1 MSRKSK--VKWFDGKKGYGFIVNPDGGEDIFVHFSAIVSEQSFKVLNQDAEVEFEIDQTQ 58 Query: 60 RGPTAANV 67 +G A NV Sbjct: 59 KGMQAKNV 66 >UniRef50_UPI0001B4CA82 DNA-binding protein n=1 Tax=Streptomyces viridochromogenes DSM 40736 RepID=UPI0001B4CA82 Length = 164 Score = 39.3 bits (90), Expect = 0.043, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G+V FD G GFI P +G ++V VH++ L G RV F ++G RG A + Sbjct: 4 GVVVRFDDVKGYGFIAPDNGGEDVFVHVNDLA-EPGTTLTSGTRVVFDVLDGGRGLKAYD 62 Query: 67 VYLS 70 V L+ Sbjct: 63 VSLA 66 >UniRef50_A1S709 Cold-shock DNA-binding protein family n=6 Tax=cellular organisms RepID=A1S709_SHEAM Length = 70 Score = 39.3 bits (90), Expect = 0.043, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 + TG VK F+ + G GF+ D +V VH A + L G +V F V G +G Sbjct: 5 QHTGTVKWFNDEKGFGFL-SRDNDSDVFVHYRAINTQGRRTLKEGQKVSFSLVEGQKGLL 63 Query: 64 AANV 67 AANV Sbjct: 64 AANV 67 >UniRef50_A0ACJ4 Putative DNA-binding protein n=2 Tax=Streptomyces RepID=A0ACJ4_STRAM Length = 172 Score = 38.9 bits (89), Expect = 0.046, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G + FD G GFI P +G ++V +H++ D +L PG++VEF G RG A+ Sbjct: 9 GKIIRFDEFRGYGFIAPDNGGEDVFIHVNDLA-FDKRLLGPGMKVEFDVEEGDRGLKASR 67 Query: 67 VYL 69 V + Sbjct: 68 VRI 70 >UniRef50_A4XHY2 Cold-shock DNA-binding protein family n=3 Tax=cellular organisms RepID=A4XHY2_CALS8 Length = 66 Score = 38.9 bits (89), Expect = 0.047, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 M G VK F+ + G GFI +G +V VH SA + L G VEF V RG A Sbjct: 1 MRGRVKWFNPEKGYGFISTENG-DDVFVHFSAINMEGYKTLAEGQMVEFDVVKSERGNQA 59 Query: 65 ANV 67 NV Sbjct: 60 VNV 62 >UniRef50_B0UEI2 Cold-shock DNA-binding domain protein n=11 Tax=Alphaproteobacteria RepID=B0UEI2_METS4 Length = 242 Score = 38.9 bits (89), Expect = 0.049, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 36/69 (52%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 S +M+G VK +D G GF+ DG K+V VH SA + L G +V V G +G Sbjct: 173 STEMSGTVKWYDPAKGFGFVSVKDGGKDVFVHRSALARAGLDSLAEGQQVTMGVVEGQKG 232 Query: 62 PTAANVYLS 70 A ++ ++ Sbjct: 233 REAQSITVA 241 >UniRef50_D0MDE8 Cold-shock DNA-binding domain protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MDE8_RHOM4 Length = 95 Score = 38.9 bits (89), Expect = 0.052, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISA-FTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 G+VK FD K G GFII +G ++ VH S + R + L G VEF G +G A Sbjct: 6 GVVKWFDAKKGYGFIIHPEGGADIFVHYSQIISERRFKTLRTGQIVEFELHEGPKGLHAR 65 Query: 66 NV 67 NV Sbjct: 66 NV 67 >UniRef50_Q6PHF1 Calcium regulated heat stable protein 1 n=2 Tax=Euteleostomi RepID=Q6PHF1_DANRE Length = 155 Score = 38.9 bits (89), Expect = 0.055, Method: Compositional matrix adjust. Identities = 16/31 (51%), Positives = 20/31 (64%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHIS 35 +G+ K F R G GFI PSDG ++ VHIS Sbjct: 71 FSGVCKCFSRSKGHGFITPSDGGNDIFVHIS 101 >UniRef50_Q0BPU3 Cold shock protein n=2 Tax=Alphaproteobacteria RepID=Q0BPU3_GRABC Length = 100 Score = 38.5 bits (88), Expect = 0.061, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 27/49 (55%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEF 53 + G VK F+ G GFI PS G K+V VHISA L G +++F Sbjct: 33 LHGTVKWFNPTKGYGFIAPSTGEKDVFVHISAVQRAGLRSLNEGQQLDF 81 >UniRef50_B9KKC8 Cold-shock DNA-binding protein family n=21 Tax=Rhodobacteraceae RepID=B9KKC8_RHOSK Length = 83 Score = 38.5 bits (88), Expect = 0.064, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 21/31 (67%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISA 36 TG VK F+ G GFI P DG K+V VHISA Sbjct: 18 TGTVKWFNSTKGFGFIAPDDGGKDVFVHISA 48 >UniRef50_D1A5P8 Cold-shock DNA-binding domain protein n=33 Tax=Actinobacteridae RepID=D1A5P8_THECD Length = 135 Score = 38.5 bits (88), Expect = 0.068, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK +D G GF+ DG EV VH SA P L G RVEF V G RG A Sbjct: 7 TGKVKWYDAGKGFGFLTRDDG-GEVFVHSSAL-PSGVTSLKTGQRVEFGVVEGRRGQQAL 64 Query: 66 NV 67 +V Sbjct: 65 SV 66 >UniRef50_B9JZ17 Cold shock protein n=106 Tax=Alphaproteobacteria RepID=B9JZ17_AGRVS Length = 71 Score = 38.1 bits (87), Expect = 0.081, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR--GPT 63 TGIVK F+ G GFI P +G ++ VHISA L +V F R GP Sbjct: 4 TGIVKFFNNDKGFGFIKPDNGGADIFVHISAVQASGLNGLSENQKVSFDTEPDRRGKGPK 63 Query: 64 AANVYLS 70 A N+ ++ Sbjct: 64 AVNLQIA 70 >UniRef50_A0PKZ5 Cold shock-like protein B CspB n=78 Tax=Actinomycetales RepID=A0PKZ5_MYCUA Length = 184 Score = 38.1 bits (87), Expect = 0.083, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 2/64 (3%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK +D G GF+ +G ++V V SA P E L G RVEF +G RGP A Sbjct: 53 TGKVKWYDSDKGFGFLSQEEG-EDVYVRSSAL-PAGVEGLKAGQRVEFGIASGRRGPQAL 110 Query: 66 NVYL 69 ++ L Sbjct: 111 SLKL 114 >UniRef50_A3BPB0 Putative uncharacterized protein n=4 Tax=Oryza sativa RepID=A3BPB0_ORYSJ Length = 238 Score = 38.1 bits (87), Expect = 0.097, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 32/64 (50%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 S ++ G VK FD G GFI P DG +++ VH S+ L G VEF +G G Sbjct: 3 SERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSDGYRSLNDGDVVEFSVGSGNDG 62 Query: 62 PTAA 65 T A Sbjct: 63 RTKA 66 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P58726 Cold shock-like protein cspJ n=322 Tax=cellular ... 112 4e-24 UniRef50_P0A363 Cold shock-like protein cspB n=58 Tax=Enterobact... 112 4e-24 UniRef50_P36995 Cold shock-like protein cspB n=24 Tax=Bacteria R... 111 5e-24 UniRef50_B5Y9M2 Conserved domain protein n=20 Tax=Bacteria RepID... 109 2e-23 UniRef50_P0A974 Cold shock-like protein cspE n=233 Tax=Gammaprot... 109 3e-23 UniRef50_Q4KEW6 Cold shock protein capa n=14 Tax=Bacteria RepID=... 108 7e-23 UniRef50_A9IR63 Cold shock-like protein n=13 Tax=cellular organi... 106 3e-22 UniRef50_P0A9Y8 Cold shock-like protein cspC n=125 Tax=Enterobac... 104 1e-21 UniRef50_O30875 Major cold shock protein n=98 Tax=cellular organ... 102 4e-21 UniRef50_P62171 Cold shock-like protein cspC n=85 Tax=Bacteria R... 101 7e-21 UniRef50_C9KNJ1 Conserved domain protein n=1 Tax=Mitsuokella mul... 100 1e-20 UniRef50_A4G7K9 Cold shock protein CspD n=3 Tax=Bacteria RepID=A... 100 2e-20 UniRef50_Q3AFQ5 Cold shock protein CspC n=14 Tax=Bacteria RepID=... 100 3e-20 UniRef50_B4U902 Cold-shock DNA-binding domain protein n=9 Tax=Ba... 99 5e-20 UniRef50_A8QHS7 'Cold-shock' DNA-binding domain containing prote... 97 2e-19 UniRef50_C4Z3Q0 Cold shock protein (Beta-ribbon, CspA family) n=... 97 2e-19 UniRef50_O54310 Cold shock-like protein n=7 Tax=Bacteria RepID=C... 96 3e-19 UniRef50_A4TN10 Cold-shock DNA-binding protein family n=35 Tax=E... 95 5e-19 UniRef50_Q81DK5 Cold shock-like protein cspE n=713 Tax=Bacteria ... 95 9e-19 UniRef50_Q5HPE0 Cold shock protein cspA n=113 Tax=Bacteria RepID... 94 1e-18 UniRef50_C4WSK9 ACYPI003867 protein n=1 Tax=Acyrthosiphon pisum ... 93 3e-18 UniRef50_A4FKV9 Putative DNA-binding protein n=1 Tax=Saccharopol... 91 8e-18 UniRef50_B1MZK9 Cold shock protein n=15 Tax=Bacteria RepID=B1MZK... 91 1e-17 UniRef50_D1S746 Cold-shock DNA-binding domain protein n=1 Tax=Mi... 91 1e-17 UniRef50_C4K358 RNA chaperone, transcription antiterminator n=3 ... 90 3e-17 UniRef50_UPI0000D57810 PREDICTED: similar to CG9705 CG9705-PA n=... 78 1e-13 UniRef50_UPI000190F4F4 cold shock protein (CspH) n=1 Tax=Salmone... 76 3e-13 Sequences not found previously or not previously below threshold: UniRef50_Q88P68 Cold-shock domain family protein n=52 Tax=Bacter... 107 1e-22 UniRef50_Q7NT55 Cold shock transcription regulator protein n=1 T... 104 9e-22 UniRef50_Q0JY13 Cold shock protein, DNA-binding n=2 Tax=Burkhold... 100 2e-20 UniRef50_D1IX09 Whole genome shotgun sequence of line PN40024, s... 98 8e-20 UniRef50_A3BPB0 Putative uncharacterized protein n=4 Tax=Oryza s... 97 1e-19 UniRef50_Q1LCU6 Cold-shock DNA-binding protein family n=7 Tax=Pr... 97 2e-19 UniRef50_Q08VT0 Conserved domain protein n=3 Tax=Bacteria RepID=... 97 2e-19 UniRef50_Q03A67 Cold-shock DNA-binding protein family n=16 Tax=F... 96 3e-19 UniRef50_O67327 Cold shock-like protein n=2 Tax=Bacteria RepID=C... 96 3e-19 UniRef50_B3PL56 Cold-shock protein CspD n=34 Tax=Bacteria RepID=... 96 4e-19 UniRef50_Q2LY24 Cold shock protein n=11 Tax=Bacteria RepID=Q2LY2... 96 4e-19 UniRef50_A3Y9L0 Cold-shock DNA-binding domain protein n=2 Tax=Ma... 95 5e-19 UniRef50_A2SIM9 Cold-shock DNA-binding protein family n=16 Tax=P... 95 7e-19 UniRef50_Q816H3 Cold shock-like protein cspD n=370 Tax=Bacteria ... 95 8e-19 UniRef50_Q1DBV4 Cold-shock protein CspA n=10 Tax=cellular organi... 95 8e-19 UniRef50_D1C6U7 Cold-shock DNA-binding domain protein n=1 Tax=Sp... 94 1e-18 UniRef50_Q2LQ45 Cold shock protein n=49 Tax=Bacteria RepID=Q2LQ4... 94 1e-18 UniRef50_P0A356 Cold shock-like protein cspLA n=163 Tax=root Rep... 94 1e-18 UniRef50_B7C7U1 Putative uncharacterized protein n=1 Tax=Eubacte... 94 1e-18 UniRef50_C5RTX4 Cold-shock DNA-binding domain protein n=13 Tax=c... 93 2e-18 UniRef50_B0KQL2 Cold-shock DNA-binding domain protein n=2 Tax=Ga... 93 2e-18 UniRef50_Q0SKK0 Cold shock protein n=1 Tax=Rhodococcus jostii RH... 93 2e-18 UniRef50_O46173 Y-box protein n=14 Tax=cellular organisms RepID=... 93 2e-18 UniRef50_UPI000194E5B1 PREDICTED: Rous sarcoma virus transcripti... 93 3e-18 UniRef50_Q90650 Rous sarcoma virus transcription enhancer factor... 93 3e-18 UniRef50_A4XHY2 Cold-shock DNA-binding protein family n=3 Tax=ce... 93 3e-18 UniRef50_Q2P2A6 Major cold shock protein n=21 Tax=Gammaproteobac... 92 5e-18 UniRef50_P54584 Cold shock protein n=9 Tax=Bacteria RepID=CSP_ARTGO 92 5e-18 UniRef50_A5BWB0 Putative uncharacterized protein n=1 Tax=Vitis v... 92 5e-18 UniRef50_P41824 Y-box factor homolog n=1 Tax=Aplysia californica... 92 5e-18 UniRef50_UPI000155BE86 PREDICTED: hypothetical protein, partial ... 92 5e-18 UniRef50_C7Q9X4 Cold-shock DNA-binding domain protein n=31 Tax=B... 92 6e-18 UniRef50_A4VMZ2 Cold shock protein CspA n=2 Tax=Gammaproteobacte... 92 6e-18 UniRef50_B7PM92 PIN domain-containing RNA-binding protein, putat... 92 6e-18 UniRef50_A4VNB0 Cold-shock DNA-binding protein n=75 Tax=Bacteria... 91 8e-18 UniRef50_P72192 Temperature acclimation protein B (Fragment) n=8... 91 8e-18 UniRef50_P71478 Cold shock protein 1 n=20 Tax=Firmicutes RepID=C... 91 1e-17 UniRef50_C6VN45 Cold shock protein CspC n=8 Tax=Firmicutes RepID... 91 1e-17 UniRef50_P16989 DNA-binding protein A n=144 Tax=cellular organis... 90 1e-17 UniRef50_A0NEN6 AGAP006108-PA n=4 Tax=Culicimorpha RepID=A0NEN6_... 90 1e-17 UniRef50_B5AU39 Y-box protein Lyb1 n=1 Tax=Lethenteron japonicum... 90 1e-17 UniRef50_C9Y043 Cold shock-like protein cspD n=3 Tax=Enterobacte... 90 2e-17 UniRef50_B4S1R6 Stress response protein CspD n=5 Tax=cellular or... 90 2e-17 UniRef50_Q0BPU3 Cold shock protein n=2 Tax=Alphaproteobacteria R... 90 2e-17 UniRef50_P27484 Glycine-rich protein 2 n=5 Tax=Viridiplantae Rep... 90 2e-17 UniRef50_Q1J0P4 Cold-shock DNA-binding domain protein n=9 Tax=Ba... 90 2e-17 UniRef50_UPI000051480C PREDICTED: similar to ypsilon schachtel C... 90 3e-17 UniRef50_Q3IC55 Cold shock protein n=52 Tax=Bacteria RepID=Q3IC5... 90 3e-17 UniRef50_B3RZU4 Putative uncharacterized protein n=1 Tax=Trichop... 90 3e-17 UniRef50_A1JMC2 Cold shock-like protein cspD (Cold shock-like pr... 90 3e-17 UniRef50_Q90WH1 Cold-shock domain protein (Fragment) n=4 Tax=Per... 90 3e-17 UniRef50_A4VLV8 Cold-shock protein CspD n=5 Tax=Gammaproteobacte... 89 3e-17 UniRef50_P95459 Major cold shock protein cspA n=33 Tax=cellular ... 89 3e-17 UniRef50_Q9Y2T7 Y-box-binding protein 2 n=21 Tax=Tetrapoda RepID... 89 5e-17 UniRef50_C8P136 Conserved domain protein n=6 Tax=Bacteria RepID=... 88 6e-17 UniRef50_Q9AN51 Blr1947 protein n=2 Tax=Bradyrhizobium japonicum... 88 6e-17 UniRef50_A1S709 Cold-shock DNA-binding protein family n=6 Tax=ce... 88 7e-17 UniRef50_Q4FT63 Cold-shock DNA-binding protein family n=10 Tax=c... 88 8e-17 UniRef50_UPI00004F1407 PREDICTED: similar to CSDA protein n=1 Ta... 88 8e-17 UniRef50_B8C1C4 Cold-shock DNA-binding domain-containing protein... 88 9e-17 UniRef50_C1F531 Cold shock protein n=1 Tax=Acidobacterium capsul... 88 1e-16 UniRef50_C4WXL4 ACYPI009849 protein n=3 Tax=cellular organisms R... 88 1e-16 UniRef50_Q01761 Cold shock-like protein 7.0 n=356 Tax=cellular o... 87 2e-16 UniRef50_C4QN73 Y box binding protein, putative n=4 Tax=Bilateri... 86 2e-16 UniRef50_A5VRM7 Cold-shock family protein n=37 Tax=Brucellaceae ... 86 2e-16 UniRef50_A1U3R2 Cold-shock DNA-binding protein family n=3 Tax=Ma... 86 3e-16 UniRef50_B3EP04 Cold-shock DNA-binding domain protein n=13 Tax=C... 86 3e-16 UniRef50_O65639 Glycine-rich protein n=10 Tax=cellular organisms... 86 3e-16 UniRef50_D0LU49 Cold-shock DNA-binding domain protein n=1 Tax=Ha... 86 3e-16 UniRef50_C4QN75 Y box binding protein, putative n=10 Tax=cellula... 86 3e-16 UniRef50_Q47TE2 Cold-shock DNA-binding protein family n=9 Tax=Ac... 86 3e-16 UniRef50_A4RZ32 Predicted protein n=1 Tax=Ostreococcus lucimarin... 86 3e-16 UniRef50_B5HGK4 Cold shock protein n=10 Tax=Streptomyces RepID=B... 86 4e-16 UniRef50_B5X2B2 Y-box-binding protein 2-A n=1 Tax=Salmo salar Re... 86 4e-16 UniRef50_Q9VRN5 Protein lin-28 homolog n=1 Tax=Drosophila melano... 86 4e-16 UniRef50_Q30QF0 Cold-shock DNA-binding protein family n=12 Tax=P... 85 5e-16 UniRef50_C4RFH3 DNA binding protein n=1 Tax=Micromonospora sp. A... 85 5e-16 UniRef50_D1H869 Whole genome shotgun sequence of line PN40024, s... 85 5e-16 UniRef50_D0MDE8 Cold-shock DNA-binding domain protein n=1 Tax=Rh... 85 5e-16 UniRef50_UPI0001555D69 PREDICTED: similar to LD37574p, partial n... 85 7e-16 UniRef50_A3XD40 Cold shock family protein n=5 Tax=Rhodobacterace... 85 8e-16 UniRef50_P0A970 Cold shock-like protein cspD n=101 Tax=Gammaprot... 85 9e-16 UniRef50_UPI0000F32A39 PREDICTED: Bos taurus similar to transcri... 85 9e-16 UniRef50_D1BKC9 Cold shock domain protein CspD n=31 Tax=Bacteria... 85 9e-16 UniRef50_Q38896 Glycine-rich protein 2b n=125 Tax=cellular organ... 84 1e-15 UniRef50_B4SCC3 Cold-shock DNA-binding domain protein n=4 Tax=ce... 84 1e-15 UniRef50_A9W6T1 Cold-shock protein DNA-binding n=32 Tax=Bacteria... 84 1e-15 UniRef50_Q4ZRK5 Cold-shock protein, DNA-binding n=10 Tax=Pseudom... 84 2e-15 UniRef50_C0QFU1 CspA n=4 Tax=cellular organisms RepID=C0QFU1_DESAH 84 2e-15 UniRef50_O13015 Y box protein 2 n=4 Tax=Clupeocephala RepID=O130... 84 2e-15 UniRef50_A8I8L3 Cold-shock DNA-binding domain n=1 Tax=Azorhizobi... 83 3e-15 UniRef50_B5A4M3 Glycine-rich nucleic acid binding protein n=1 Ta... 83 3e-15 UniRef50_A7HXE8 Putative cold-shock DNA-binding domain protein n... 83 3e-15 UniRef50_A5N624 CspA n=10 Tax=cellular organisms RepID=A5N624_CLOK5 83 3e-15 UniRef50_O62213 Protein F33A8.3, confirmed by transcript evidenc... 83 3e-15 UniRef50_B0UEI2 Cold-shock DNA-binding domain protein n=11 Tax=A... 83 3e-15 UniRef50_B4RGZ9 Cold-shock DNA-binding domain protein n=75 Tax=B... 83 4e-15 UniRef50_C4FWF1 Putative uncharacterized protein n=1 Tax=Catonel... 82 4e-15 UniRef50_Q11GE9 Cold-shock DNA-binding protein family n=10 Tax=A... 82 5e-15 UniRef50_D0KX28 Cold-shock DNA-binding domain protein n=1 Tax=Ha... 82 5e-15 UniRef50_D1AYL8 Cold-shock DNA-binding domain protein n=3 Tax=ce... 82 6e-15 UniRef50_B7RWZ3 'Cold-shock' DNA-binding domain protein n=1 Tax=... 82 6e-15 UniRef50_Q4H2L8 Y-box protein 1/2/3 n=2 Tax=Ciona intestinalis R... 82 7e-15 UniRef50_B0S1I2 Cold shock protein n=4 Tax=cellular organisms Re... 82 7e-15 UniRef50_Q1RLA8 Zinc finger protein n=1 Tax=Ciona intestinalis R... 81 7e-15 UniRef50_D1A5P8 Cold-shock DNA-binding domain protein n=33 Tax=A... 81 8e-15 UniRef50_B9KKC8 Cold-shock DNA-binding protein family n=21 Tax=R... 81 1e-14 UniRef50_D0MCR5 Cold-shock DNA-binding domain protein n=1 Tax=Rh... 81 1e-14 UniRef50_UPI00017B0A95 UPI00017B0A95 related cluster n=1 Tax=Tet... 80 2e-14 UniRef50_Q5CVY2 Cold shock RNA binding domain of the OB fold (Fr... 80 2e-14 UniRef50_Q23960 Y-box protein n=1 Tax=Dugesia japonica RepID=Q23... 80 2e-14 UniRef50_Q9Z3S6 Cold shock protein cspA n=72 Tax=Bacteria RepID=... 80 2e-14 UniRef50_P55390 Probable cold shock protein y4cH n=110 Tax=Prote... 80 3e-14 UniRef50_A1U1H2 Cold-shock DNA-binding protein family n=5 Tax=Ga... 80 3e-14 UniRef50_Q2S0T4 Conserved domain protein n=2 Tax=Bacteria RepID=... 79 5e-14 UniRef50_P91306 Y-box protein 2 n=6 Tax=Caenorhabditis RepID=P91... 79 5e-14 UniRef50_A5VRP5 Cold-shock family protein n=37 Tax=Brucellaceae ... 78 6e-14 UniRef50_B1Z823 Cold-shock DNA-binding domain protein n=34 Tax=A... 78 6e-14 UniRef50_A8ILK3 Cold shock protein n=9 Tax=Proteobacteria RepID=... 78 6e-14 UniRef50_A4A3Y7 Cold-shock domain family protein n=2 Tax=unclass... 78 9e-14 UniRef50_A0R441 'Cold-shock' DNA-binding domain protein n=18 Tax... 78 1e-13 UniRef50_B8KR01 'Cold-shock' DNA-binding domain protein n=1 Tax=... 78 1e-13 UniRef50_A4V6J7 Y-Box factor protein (Fragment) n=1 Tax=Dugesia ... 77 1e-13 UniRef50_D1U4V2 Cold-shock DNA-binding domain protein n=1 Tax=De... 77 1e-13 UniRef50_A8PLB9 'Cold-shock' DNA-binding domain containing prote... 77 1e-13 UniRef50_Q1AWL7 Cold-shock DNA-binding protein family n=2 Tax=ce... 77 2e-13 UniRef50_B0T8T3 Cold-shock DNA-binding domain protein n=40 Tax=B... 76 2e-13 UniRef50_B3QZU5 Cold shock-like protein n=1 Tax=Candidatus Phyto... 76 2e-13 UniRef50_Q2W0B3 Cold shock protein n=3 Tax=Magnetospirillum RepI... 76 2e-13 UniRef50_A3YG84 Cold-shock protein CspD n=2 Tax=Marinomonas RepI... 76 3e-13 UniRef50_B6QZ94 Cold-shock DNA-binding domain protein n=1 Tax=Ps... 76 4e-13 UniRef50_Q5YVF2 Putative cold shock protein n=1 Tax=Nocardia far... 76 4e-13 UniRef50_Q2S3Y3 'Cold-shock' DNA-binding domain, putative n=1 Ta... 76 5e-13 UniRef50_A0ACJ4 Putative DNA-binding protein n=2 Tax=Streptomyce... 75 6e-13 UniRef50_B9JZ17 Cold shock protein n=106 Tax=Alphaproteobacteria... 75 6e-13 UniRef50_B4SFC0 Cold-shock DNA-binding domain protein n=1 Tax=Pe... 75 7e-13 UniRef50_B6IXJ6 Cold shock-like protein CspA n=1 Tax=Rhodospiril... 75 7e-13 UniRef50_UPI0000589074 PREDICTED: similar to ENSANGP00000011455 ... 75 9e-13 UniRef50_P46449 Cold shock-like protein cspD n=53 Tax=Bacteria R... 75 1e-12 UniRef50_UPI0001B4CA82 DNA-binding protein n=1 Tax=Streptomyces ... 74 1e-12 UniRef50_Q1RHK6 Cold shock-like protein cspA n=15 Tax=Rickettsia... 74 1e-12 UniRef50_Q2NK56 Cold shock protein n=6 Tax=Bacteria RepID=Q2NK56... 74 1e-12 UniRef50_B3DPK3 Cold shock protein n=7 Tax=Bifidobacterium RepID... 74 1e-12 UniRef50_A0PKZ5 Cold shock-like protein B CspB n=78 Tax=Actinomy... 74 1e-12 UniRef50_B9F7B8 Putative uncharacterized protein n=1 Tax=Oryza s... 74 1e-12 UniRef50_Q5YWN3 Putative cold shock protein n=1 Tax=Nocardia far... 74 2e-12 UniRef50_Q56922 Major cold shock protein (Fragment) n=404 Tax=Ba... 74 2e-12 UniRef50_D0Z9M8 Cold shock-like protein n=3 Tax=Enterobacteriace... 73 2e-12 UniRef50_A3YF52 Cold-shock protein, DNA-binding n=2 Tax=Marinomo... 73 2e-12 UniRef50_Q1YTJ3 Cold shock protein n=1 Tax=gamma proteobacterium... 73 2e-12 UniRef50_Q1NG42 Cold shock protein n=3 Tax=Alphaproteobacteria R... 73 2e-12 UniRef50_A0Z255 Cold shock protein, CspA family-like protein n=1... 73 2e-12 UniRef50_C1E859 Cold-shock protein with RNA binding domain n=2 T... 73 2e-12 UniRef50_C0Z2E8 AT4G38680 protein n=103 Tax=cellular organisms R... 73 2e-12 UniRef50_A3VSH0 Cold shock protein n=1 Tax=Parvularcula bermuden... 73 3e-12 UniRef50_A5VJ42 Cold-shock DNA-binding protein family n=10 Tax=L... 73 3e-12 UniRef50_D2QP83 Cold-shock DNA-binding domain protein n=5 Tax=Ba... 73 3e-12 UniRef50_Q016S2 Putative nucleic acid binding protein (ISS) n=1 ... 73 3e-12 UniRef50_Q0VN88 Cold-shock domain family protein n=2 Tax=Alcaniv... 73 3e-12 UniRef50_C9NB66 Cold-shock DNA-binding domain protein n=1 Tax=St... 73 3e-12 UniRef50_C8WCQ1 Cold-shock DNA-binding domain protein n=18 Tax=A... 73 4e-12 UniRef50_A7BYF1 Putative uncharacterized protein n=1 Tax=Beggiat... 73 4e-12 UniRef50_P92186 Protein lin-28 n=5 Tax=Caenorhabditis RepID=LIN2... 73 4e-12 UniRef50_C8SGB1 Cold-shock DNA-binding domain protein n=4 Tax=Me... 72 5e-12 UniRef50_A9AXX4 Cold-shock DNA-binding domain protein n=1 Tax=He... 72 6e-12 UniRef50_C5RAK7 Cold shock protein CspA n=1 Tax=Weissella parame... 72 6e-12 UniRef50_Q4SGH3 Chromosome undetermined SCAF14594, whole genome ... 71 7e-12 UniRef50_D0LBW3 Cold-shock protein DNA-binding protein n=2 Tax=C... 71 9e-12 UniRef50_D2RAW4 Cold-shock DNA-binding domain protein n=2 Tax=Bi... 71 1e-11 UniRef50_Q5JKD6 Cold shock domain protein 2-like protein n=1 Tax... 71 1e-11 UniRef50_B6KPP5 Glycine-rich protein 2, putative n=3 Tax=Toxopla... 71 1e-11 UniRef50_A8NIV0 'Cold-shock' DNA-binding domain containing prote... 71 1e-11 UniRef50_Q4UBG6 Cold shock protein, putative n=2 Tax=Theileria R... 71 1e-11 UniRef50_Q7NNC3 Gsr0488 protein n=1 Tax=Gloeobacter violaceus Re... 71 2e-11 UniRef50_UPI0001AEE83B putative DNA binding protein n=2 Tax=Stre... 70 2e-11 UniRef50_C6C161 Cold-shock DNA-binding domain protein n=1 Tax=De... 70 3e-11 UniRef50_D1XSW6 Cold-shock DNA-binding domain protein n=3 Tax=St... 70 3e-11 UniRef50_Q17JD9 Putative uncharacterized protein n=1 Tax=Aedes a... 70 3e-11 UniRef50_A1B0C7 Cold-shock DNA-binding protein family n=28 Tax=R... 70 3e-11 UniRef50_A9KN41 Cold-shock DNA-binding domain protein n=22 Tax=F... 70 3e-11 UniRef50_C0CRT9 Putative uncharacterized protein n=1 Tax=Blautia... 69 4e-11 UniRef50_Q2RZT3 Conserved domain protein n=2 Tax=Salinibacter ru... 69 5e-11 UniRef50_Q2RQP4 Cold-shock DNA-binding protein family n=1 Tax=Rh... 69 5e-11 UniRef50_B9T6D3 Cellular nucleic acid binding protein, putative ... 69 6e-11 UniRef50_Q013V8 Glycogen debranching enzyme (ISS) n=1 Tax=Ostreo... 69 6e-11 UniRef50_Q9VVA0 Cold shock domain-containing protein CG9705 n=17... 68 6e-11 UniRef50_A5V9E9 Cold-shock DNA-binding protein family n=2 Tax=ce... 68 6e-11 UniRef50_Q0APJ7 Cold-shock DNA-binding protein family n=1 Tax=Ma... 68 7e-11 UniRef50_B2IBA0 Cold-shock DNA-binding domain protein n=2 Tax=Rh... 68 8e-11 UniRef50_B9MXF4 Predicted protein n=2 Tax=Populus trichocarpa Re... 68 8e-11 UniRef50_B9K345 CspA-like protein n=3 Tax=Agrobacterium RepID=B9... 68 8e-11 UniRef50_A8M1B3 Cold-shock DNA-binding domain protein n=2 Tax=Sa... 68 8e-11 UniRef50_Q6ZN17 Protein lin-28 homolog B n=13 Tax=Tetrapoda RepI... 68 9e-11 UniRef50_Q1GT29 Cold-shock DNA-binding protein family n=1 Tax=Sp... 68 9e-11 UniRef50_B0VIQ0 Cold-shock domain family protein n=2 Tax=Bacteri... 68 9e-11 UniRef50_A9ART0 Cold-shock DNA-binding domain protein n=1 Tax=Bu... 68 9e-11 UniRef50_B0W4X1 Putative uncharacterized protein n=1 Tax=Culex q... 68 1e-10 UniRef50_A0PKE1 DNA-binding protein n=2 Tax=Mycobacterium RepID=... 68 1e-10 UniRef50_B7RPT8 Cold shock protein n=1 Tax=Roseobacter sp. GAI10... 67 2e-10 UniRef50_Q0RYK4 Probable cold shock protein CspA n=1 Tax=Rhodoco... 67 2e-10 UniRef50_C6A7D6 Cold shock protein n=5 Tax=Bifidobacteriaceae Re... 67 2e-10 UniRef50_Q2RWM8 Cold-shock DNA-binding protein family n=1 Tax=Rh... 67 2e-10 UniRef50_D2H5S2 Putative uncharacterized protein (Fragment) n=2 ... 67 2e-10 UniRef50_D2QU65 Cold-shock DNA-binding domain protein n=23 Tax=B... 67 2e-10 UniRef50_A8L8B0 Cold-shock DNA-binding domain protein n=5 Tax=Ac... 66 2e-10 UniRef50_B9T6B7 Cold shock protein, putative n=1 Tax=Ricinus com... 66 3e-10 UniRef50_Q5Z0N3 Putative cold shock protein n=2 Tax=Bacteria Rep... 66 3e-10 UniRef50_Q52287 Major cold shock protein (Fragment) n=22 Tax=cel... 66 4e-10 UniRef50_Q1QLF4 Cold-shock DNA-binding protein family n=1 Tax=Ni... 66 4e-10 UniRef50_C0WQD2 Possible cold-shock protein n=3 Tax=Lactobacillu... 66 5e-10 UniRef50_C2E292 Cold-shock protein n=9 Tax=Lactobacillus RepID=C... 66 5e-10 UniRef50_B4RAZ9 Cold-shock DNA-binding domain protein n=6 Tax=Ca... 65 5e-10 UniRef50_Q28PH1 Cold-shock DNA-binding protein family n=11 Tax=R... 65 6e-10 UniRef50_B3QHW3 Cold-shock DNA-binding domain protein n=92 Tax=A... 65 6e-10 UniRef50_A2SHE7 Cold-shock DNA-binding domain n=2 Tax=Betaproteo... 65 6e-10 UniRef50_Q9XTJ6 Protein Y39A1C.3, confirmed by transcript eviden... 65 6e-10 UniRef50_C6XG83 Cold shock protein n=1 Tax=Candidatus Liberibact... 65 7e-10 UniRef50_Q803L0 Protein lin-28 homolog A n=13 Tax=Euteleostomi R... 65 9e-10 UniRef50_A6ESQ3 Cold shock protein n=2 Tax=Bacteroidetes RepID=A... 65 9e-10 UniRef50_Q9EZJ7 Cold shock-like protein CspE (Fragment) n=1 Tax=... 65 1e-09 UniRef50_B7G5B5 Predicted protein n=1 Tax=Phaeodactylum tricornu... 64 1e-09 UniRef50_Q1AY27 Cold-shock DNA-binding protein family n=10 Tax=B... 64 1e-09 UniRef50_Q6PHF1 Calcium regulated heat stable protein 1 n=2 Tax=... 64 1e-09 >UniRef50_P58726 Cold shock-like protein cspJ n=322 Tax=cellular organisms RepID=CSPJ_SALTI Length = 70 Score = 112 bits (280), Expect = 4e-24, Method: Composition-based stats. Identities = 30/67 (44%), Positives = 39/67 (58%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M+ K+TG+VK F+ + G GFI P DG K+V VH SA + L VEF G + Sbjct: 1 MTTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTLNENQEVEFSAEQGPK 60 Query: 61 GPTAANV 67 GP+A NV Sbjct: 61 GPSAVNV 67 >UniRef50_P0A363 Cold shock-like protein cspB n=58 Tax=Enterobacteriaceae RepID=CSPB_YEREN Length = 70 Score = 112 bits (280), Expect = 4e-24, Method: Composition-based stats. Identities = 35/67 (52%), Positives = 41/67 (61%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 MS KMTG+VK FD G GFI P+DG K+V VH SA D + L G VEF G + Sbjct: 1 MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQK 60 Query: 61 GPTAANV 67 GP+A NV Sbjct: 61 GPSAVNV 67 >UniRef50_P36995 Cold shock-like protein cspB n=24 Tax=Bacteria RepID=CSPB_ECOLI Length = 71 Score = 111 bits (279), Expect = 5e-24, Method: Composition-based stats. Identities = 33/70 (47%), Positives = 42/70 (60%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 MS KMTG+VK F+ G GFI P DG K+V VH SA + L G +V F +G + Sbjct: 1 MSNKMTGLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDNYRTLFEGQKVTFSIESGAK 60 Query: 61 GPTAANVYLS 70 GP AANV ++ Sbjct: 61 GPAAANVIIT 70 >UniRef50_B5Y9M2 Conserved domain protein n=20 Tax=Bacteria RepID=B5Y9M2_COPPD Length = 89 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 31/66 (46%), Positives = 37/66 (56%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 ++ TG VK FD K G GFI DG +V VH SA + L G +VEF VNG +G Sbjct: 21 TKMYTGTVKWFDAKKGYGFITRDDGEGDVFVHFSAIEGNGFKSLDQGDKVEFEIVNGPKG 80 Query: 62 PTAANV 67 P AA V Sbjct: 81 PQAAKV 86 >UniRef50_P0A974 Cold shock-like protein cspE n=233 Tax=Gammaproteobacteria RepID=CSPE_ECO57 Length = 69 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 32/65 (49%), Positives = 38/65 (58%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 K+ G VK F+ G GFI P DG K+V VH SA + L G RVEF NG +GP+ Sbjct: 3 KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPS 62 Query: 64 AANVY 68 AANV Sbjct: 63 AANVI 67 >UniRef50_Q4KEW6 Cold shock protein capa n=14 Tax=Bacteria RepID=Q4KEW6_PSEF5 Length = 91 Score = 108 bits (269), Expect = 7e-23, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 32/68 (47%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 MS + TG VK F+ + G GFI P G ++ VH A + L G V F G + Sbjct: 22 MSNRQTGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIESDGFKSLKEGQTVSFVAEKGQK 81 Query: 61 GPTAANVY 68 G AA V Sbjct: 82 GMQAAQVR 89 >UniRef50_Q88P68 Cold-shock domain family protein n=52 Tax=Bacteria RepID=Q88P68_PSEPK Length = 165 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M+ + G VK F+ + G GFI P G ++ VH A + L G +V F V G + Sbjct: 97 MAERQKGTVKWFNDEKGYGFITPESG-PDLFVHFRAIEGNGFKSLKEGQQVTFEAVQGQK 155 Query: 61 GPTAANV 67 G A V Sbjct: 156 GMQADKV 162 >UniRef50_A9IR63 Cold shock-like protein n=13 Tax=cellular organisms RepID=A9IR63_BORPD Length = 68 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 36/65 (55%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TGIVK F+ + G GFI P DG K++ H S + + L RV F G +GP+A Sbjct: 3 TGIVKWFNAEKGYGFITPDDGSKDLFAHYSEISSEGYKSLQENQRVTFEVGQGPKGPSAK 62 Query: 66 NVYLS 70 N+ +S Sbjct: 63 NIKVS 67 >UniRef50_Q7NT55 Cold shock transcription regulator protein n=1 Tax=Chromobacterium violaceum RepID=Q7NT55_CHRVO Length = 110 Score = 104 bits (260), Expect = 9e-22, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 3 RKM-TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 KM TG VK F+ G GFI P +G +V H S + L RV F V G +G Sbjct: 42 NKMATGTVKWFNDSKGFGFITPDEGGDDVFAHFSQINAKGFRSLAENQRVSFDIVEGPKG 101 Query: 62 PTAANV 67 A+N+ Sbjct: 102 KQASNI 107 >UniRef50_P0A9Y8 Cold shock-like protein cspC n=125 Tax=Enterobacteriaceae RepID=CSPC_ECO57 Length = 69 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 36/64 (56%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 K+ G VK F+ G GFI P+DG K+V VH SA + L G VEF +G +GP Sbjct: 3 KIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPA 62 Query: 64 AANV 67 A NV Sbjct: 63 AVNV 66 >UniRef50_O30875 Major cold shock protein n=98 Tax=cellular organisms RepID=CSPA_MICLC Length = 67 Score = 102 bits (254), Expect = 4e-21, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 32/61 (52%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G VK F+ + G GFI P D +V VH SA + L RVEF +G +G AAN Sbjct: 4 GTVKWFNAEKGYGFIAPEDNSADVFVHFSAIQGNGFKELQENDRVEFETQDGPKGLQAAN 63 Query: 67 V 67 V Sbjct: 64 V 64 >UniRef50_P62171 Cold shock-like protein cspC n=85 Tax=Bacteria RepID=CSPC_BACCR Length = 65 Score = 101 bits (252), Expect = 7e-21, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 M G VK F+ + G GFI DG +V VH SA + L G +VEF V+G RGP A Sbjct: 1 MQGRVKWFNAEKGFGFIEREDG-DDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQA 59 Query: 65 ANV 67 ANV Sbjct: 60 ANV 62 >UniRef50_C9KNJ1 Conserved domain protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNJ1_9FIRM Length = 66 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 M G VK F + G GFI G +V VH SA + L G VEF V G RGP A Sbjct: 1 MVGKVKWFSPEKGYGFIARE-GGDDVFVHFSAIQDEGFKTLNEGQDVEFEIVEGARGPQA 59 Query: 65 ANVY 68 ANV Sbjct: 60 ANVI 63 >UniRef50_A4G7K9 Cold shock protein CspD n=3 Tax=Bacteria RepID=A4G7K9_HERAR Length = 67 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 32/65 (49%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 TG VK F+ G GFI P G +++ H SA T + L G +V F G +G Sbjct: 1 MQTGTVKWFNDSKGFGFITPDSGGEDLFAHFSAITMEGFKTLKEGQKVSFEVTQGPKGKQ 60 Query: 64 AANVY 68 A+N+ Sbjct: 61 ASNIK 65 >UniRef50_Q0JY13 Cold shock protein, DNA-binding n=2 Tax=Burkholderiaceae RepID=Q0JY13_RALEH Length = 98 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 31/64 (48%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 TGIVK F+ G GFI P G ++ H S + L RV+F NG +G Sbjct: 18 MQTGIVKWFNDAKGFGFIKPDAGGDDLFAHFSEIRADGFKSLQENQRVQFEVKNGPKGLQ 77 Query: 64 AANV 67 AAN+ Sbjct: 78 AANI 81 >UniRef50_Q3AFQ5 Cold shock protein CspC n=14 Tax=Bacteria RepID=Q3AFQ5_CARHZ Length = 65 Score = 99.6 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 M G VK FD G GFI DG +V VH SA + L G RVEF V G RGP A Sbjct: 1 MQGKVKWFDPAKGYGFIEREDGG-DVFVHFSAIKGNGFKTLEEGQRVEFNIVEGTRGPQA 59 Query: 65 ANV 67 A+V Sbjct: 60 ADV 62 >UniRef50_B4U902 Cold-shock DNA-binding domain protein n=9 Tax=Bacteria RepID=B4U902_HYDS0 Length = 71 Score = 98.8 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPR--DAEVLIPGLRVEFCRVNGLRGP 62 +TG VK F ++ G GF+ D + +V VH SA P + L+ G RVEF +GP Sbjct: 3 ITGTVKWFSKEKGYGFLTRDDNQGDVFVHFSAIDPNRQGFKTLVQGQRVEFEVDQDSKGP 62 Query: 63 TAANVYL 69 A NV + Sbjct: 63 RAKNVRV 69 >UniRef50_D1IX09 Whole genome shotgun sequence of line PN40024, scaffold_38.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1IX09_VITVI Length = 236 Score = 98.0 bits (243), Expect = 8e-20, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG-P 62 ++TG VK F+ + G GFI P DG ++ VH S+ L G VEF + G Sbjct: 3 RVTGTVKWFNDQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLGEGEAVEFVVESSDDGRT 62 Query: 63 TAANV 67 A +V Sbjct: 63 KAVDV 67 >UniRef50_A3BPB0 Putative uncharacterized protein n=4 Tax=Oryza sativa RepID=A3BPB0_ORYSJ Length = 238 Score = 97.2 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 S ++ G VK FD G GFI P DG +++ VH S+ L G VEF +G G Sbjct: 3 SERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSDGYRSLNDGDVVEFSVGSGNDG 62 Query: 62 -PTAANV 67 A NV Sbjct: 63 RTKAVNV 69 >UniRef50_A8QHS7 'Cold-shock' DNA-binding domain containing protein n=4 Tax=cellular organisms RepID=A8QHS7_BRUMA Length = 290 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++R + G VK F+ K+G GFI +D ++ VH +A T + L G +VEF V Sbjct: 54 VARHIQGTVKWFNVKNGYGFINRADTGDDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVV 113 Query: 57 NGLRGPTAANV 67 G +GP AANV Sbjct: 114 EGQKGPEAANV 124 >UniRef50_Q1LCU6 Cold-shock DNA-binding protein family n=7 Tax=Proteobacteria RepID=Q1LCU6_RALME Length = 126 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 28/62 (45%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK F+ G GFI P G ++ H S + L G +V + G +GP A Sbjct: 62 TGTVKWFNDSKGFGFITPDAGGDDLFAHFSEVQGNGFKSLQEGQKVRYVAGVGQKGPAAT 121 Query: 66 NV 67 + Sbjct: 122 KI 123 >UniRef50_C4Z3Q0 Cold shock protein (Beta-ribbon, CspA family) n=10 Tax=Bacteria RepID=C4Z3Q0_EUBE2 Length = 84 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 +M G VK F+ + G GFI G K+V VH S + L G +VEF G +GP Sbjct: 19 EMKGTVKWFNNQKGYGFISDESG-KDVFVHYSGLNMEGFKSLEEGAQVEFDVTEGAKGPQ 77 Query: 64 AANV 67 A NV Sbjct: 78 ATNV 81 >UniRef50_Q08VT0 Conserved domain protein n=3 Tax=Bacteria RepID=Q08VT0_STIAU Length = 100 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 29/66 (43%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 TG VK F+ G GFI G ++V H +A L G +V+F G +G Sbjct: 33 NMATGTVKWFNDAKGFGFITQDGGGEDVFCHHTAINMDGFRTLQEGQKVQFDVARGPKGL 92 Query: 63 TAANVY 68 A NV Sbjct: 93 QAQNVR 98 >UniRef50_Q03A67 Cold-shock DNA-binding protein family n=16 Tax=Firmicutes RepID=Q03A67_LACC3 Length = 66 Score = 96.5 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G VK F+ + G GFI DG +V VH SA + L G V F + RGP A N Sbjct: 4 GTVKWFNAEKGYGFITREDGS-DVFVHFSAIQGDGYKTLEEGQAVTFEVEDSDRGPQAVN 62 Query: 67 VY 68 V Sbjct: 63 VN 64 >UniRef50_O67327 Cold shock-like protein n=2 Tax=Bacteria RepID=CSP_AQUAE Length = 70 Score = 96.1 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 30/64 (46%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 G VK F + G GFI D +V VH + + L G +VEF V +GP A Sbjct: 4 RGTVKWFSKDKGYGFITREDTNADVFVHFTDIQMEGFKTLQKGQKVEFDVVEDTKGPRAK 63 Query: 66 NVYL 69 NV + Sbjct: 64 NVRV 67 >UniRef50_O54310 Cold shock-like protein n=7 Tax=Bacteria RepID=CSP_THEMA Length = 66 Score = 96.1 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 M G VK FD K G GFI +G +V VH SA + L G VEF G +GP A Sbjct: 1 MRGKVKWFDSKKGYGFITKDEGG-DVFVHWSAIEMEGFKTLKEGQVVEFEIQEGKKGPQA 59 Query: 65 ANVYL 69 A+V + Sbjct: 60 AHVKV 64 >UniRef50_B3PL56 Cold-shock protein CspD n=34 Tax=Bacteria RepID=B3PL56_CELJU Length = 125 Score = 95.7 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK F+ G GFI+ +G +++ H SA + + L G +V F G +G A Sbjct: 44 TGTVKWFNNAKGYGFILADEGGEDLFAHYSAISMDGYKTLKAGQQVSFEITRGDKGLHAI 103 Query: 66 NV 67 N+ Sbjct: 104 NI 105 >UniRef50_Q2LY24 Cold shock protein n=11 Tax=Bacteria RepID=Q2LY24_SYNAS Length = 132 Score = 95.7 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G VK F+ G GFI D +V VH SA + L G RV F V G +GP A N Sbjct: 70 GTVKWFNASKGFGFIA-QDNGNDVFVHFSAIKMEGYKALEEGARVRFDVVKGNKGPAADN 128 Query: 67 VYL 69 V L Sbjct: 129 VEL 131 >UniRef50_A4TN10 Cold-shock DNA-binding protein family n=35 Tax=Enterobacteriaceae RepID=A4TN10_YERPP Length = 69 Score = 95.3 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M+ KM G VK F++ G GFI P DG +V V+ +A + L G VEF + Sbjct: 1 MTLKM-GRVKWFNQSEGYGFISPHDGGSDVYVNKTAIANTKNKSLNEGQDVEFSTYRSIH 59 Query: 61 GPTAANVY 68 GP+AA+V Sbjct: 60 GPSAADVI 67 >UniRef50_A3Y9L0 Cold-shock DNA-binding domain protein n=2 Tax=Marinomonas RepID=A3Y9L0_9GAMM Length = 97 Score = 95.3 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 ++GIVK F+ + G GFI G +V VH A L G +V F G +GP A Sbjct: 33 VSGIVKWFNDEKGFGFIERE-GGPDVFVHFRAINGTGRRTLQEGQKVTFEVTQGQKGPQA 91 Query: 65 ANVYL 69 NV + Sbjct: 92 ENVSI 96 >UniRef50_A2SIM9 Cold-shock DNA-binding protein family n=16 Tax=Proteobacteria RepID=A2SIM9_METPP Length = 89 Score = 94.9 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 31/64 (48%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 + G VK F+ G GFI P G ++V H SA L G RV F V+G +G Sbjct: 1 MVNGTVKWFNDAKGFGFIEPEGGGEDVFAHFSAILMDGFRTLKQGARVSFELVDGPKGKL 60 Query: 64 AANV 67 A N+ Sbjct: 61 AQNI 64 >UniRef50_Q816H3 Cold shock-like protein cspD n=370 Tax=Bacteria RepID=CSPD_BACCR Length = 66 Score = 94.6 bits (234), Expect = 8e-19, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 TG VK F+ + G GFI G +V VH SA + L G V F V G RGP Sbjct: 1 MQTGKVKWFNSEKGFGFIEVE-GGDDVFVHFSAIQGDGFKTLEEGQEVSFEIVEGNRGPQ 59 Query: 64 AANV 67 AANV Sbjct: 60 AANV 63 >UniRef50_Q1DBV4 Cold-shock protein CspA n=10 Tax=cellular organisms RepID=Q1DBV4_MYXXD Length = 68 Score = 94.6 bits (234), Expect = 8e-19, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 30/64 (46%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK F+ G GFI DG +V H +A L G +VEF G +G A Sbjct: 3 TGTVKWFNDAKGFGFIAQDDGGADVFCHHTAIQTDGFRTLAEGQKVEFETRKGPKGLQAE 62 Query: 66 NVYL 69 NV + Sbjct: 63 NVRV 66 >UniRef50_Q81DK5 Cold shock-like protein cspE n=713 Tax=Bacteria RepID=CSPE_BACCR Length = 67 Score = 94.6 bits (234), Expect = 9e-19, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 +TG VK F+ + G GFI +DG +V VH SA T + L G V F G RGP A Sbjct: 3 LTGKVKWFNSEKGFGFIEVADG-NDVFVHFSAITGDGFKSLDEGQEVSFEVEEGNRGPQA 61 Query: 65 ANV 67 NV Sbjct: 62 KNV 64 >UniRef50_D1C6U7 Cold-shock DNA-binding domain protein n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6U7_SPHTD Length = 77 Score = 94.2 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 3/65 (4%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK +D + G GFI DG ++ VH SA + + L G RVEF + +GP A Sbjct: 3 TGTVKWYDPEKGYGFIARDDGDSDLFVHRSAISGSE---LNEGDRVEFDVTSSPKGPRAE 59 Query: 66 NVYLS 70 +V ++ Sbjct: 60 HVRVT 64 >UniRef50_Q2LQ45 Cold shock protein n=49 Tax=Bacteria RepID=Q2LQ45_SYNAS Length = 90 Score = 94.2 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G VK F+ + G GFI +G +V VH SA + L G RV F G +GP A N Sbjct: 28 GKVKWFNEQKGFGFIEKDEGG-DVFVHYSAIQSSGFKTLYEGQRVSFEVQTGQKGPAAVN 86 Query: 67 VY 68 V Sbjct: 87 VK 88 >UniRef50_P0A356 Cold shock-like protein cspLA n=163 Tax=root RepID=CSPA_LISIN Length = 66 Score = 94.2 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 G VK F+ + G GFI +G +V VH SA + L G V F G RGP AA Sbjct: 3 QGTVKWFNAEKGFGFIERENG-DDVFVHFSAIQGDGFKSLDEGQAVTFDVEEGQRGPQAA 61 Query: 66 NV 67 NV Sbjct: 62 NV 63 >UniRef50_B7C7U1 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7U1_9FIRM Length = 90 Score = 94.2 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK F+ + G GFI DG K+V VH S+ + L G V + V RG A Sbjct: 23 TGKVKWFNAEKGYGFITSEDG-KDVFVHYSSINSEGFKTLEEGQTVTYDVVESDRGQQAN 81 Query: 66 NVYL 69 NV + Sbjct: 82 NVTV 85 >UniRef50_Q5HPE0 Cold shock protein cspA n=113 Tax=Bacteria RepID=CSPA_STAEQ Length = 66 Score = 93.8 bits (232), Expect = 1e-18, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 G VK F+ + G GFI G +V VH SA + L G VEF V G RGP AA Sbjct: 3 QGTVKWFNAEKGFGFIEVE-GENDVFVHFSAINQEGYKSLEEGQSVEFEVVEGDRGPQAA 61 Query: 66 NV 67 NV Sbjct: 62 NV 63 >UniRef50_C5RTX4 Cold-shock DNA-binding domain protein n=13 Tax=cellular organisms RepID=C5RTX4_9THEO Length = 67 Score = 93.4 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 + G VK F+ + G GFI DG +V VH SA + L G +VEF V +GP Sbjct: 1 MVRGKVKWFNAEKGYGFIEREDGT-DVFVHYSAIEGDGFKTLEEGQKVEFEVVEATKGPQ 59 Query: 64 AANVY 68 A+ V Sbjct: 60 ASKVR 64 >UniRef50_B0KQL2 Cold-shock DNA-binding domain protein n=2 Tax=Gammaproteobacteria RepID=B0KQL2_PSEPG Length = 70 Score = 93.4 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M+ + G VK F+ + G GFI P G ++ VH A + L G +V F V G + Sbjct: 1 MAERQNGTVKWFNDEKGYGFITPESGA-DLFVHFRAIEGNGFKSLKEGQKVTFVAVQGQK 59 Query: 61 GPTAANVYL 69 G A V + Sbjct: 60 GLQADQVQV 68 >UniRef50_Q0SKK0 Cold shock protein n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0SKK0_RHOSR Length = 119 Score = 93.0 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 33/65 (50%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG V+ F+ + G GF+ P+DG ++ VH+S +L G RV F G A Sbjct: 55 TGTVRWFNAEQGFGFLAPADGSDDIFVHVSEIAGDGHRILEEGQRVSFAVCRTETGDQAR 114 Query: 66 NVYLS 70 +V ++ Sbjct: 115 DVRIA 119 >UniRef50_O46173 Y-box protein n=14 Tax=cellular organisms RepID=O46173_DROME Length = 359 Score = 93.0 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 3/70 (4%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAE---VLIPGLRVEFCRVN 57 ++ K+TG VK F+ KSG GFI +D R++V VH SA + + G VEF V Sbjct: 59 IATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIANNPKKAVRSVGDGEVVEFDVVI 118 Query: 58 GLRGPTAANV 67 G +G AANV Sbjct: 119 GEKGNEAANV 128 >UniRef50_UPI000194E5B1 PREDICTED: Rous sarcoma virus transcription enhancer factor II n=1 Tax=Taeniopygia guttata RepID=UPI000194E5B1 Length = 420 Score = 93.0 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRVNG 58 K+ G VK F+ ++G GFI +D +++V VH +A + + G VEF V G Sbjct: 209 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEG 268 Query: 59 LRGPTAANV 67 +G AANV Sbjct: 269 EKGAEAANV 277 >UniRef50_C4WSK9 ACYPI003867 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WSK9_ACYPI Length = 305 Score = 93.0 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAE----VLIPGLRVEFCRV 56 +S K+TG+VK F+ KSG GFI +D ++++ VH SA + + + G VEF V Sbjct: 24 ISVKVTGVVKWFNVKSGYGFINRNDTKEDIFVHQSAIIKNNPKKIVRSVGDGETVEFDVV 83 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 84 EGEKGHEAANV 94 >UniRef50_Q90650 Rous sarcoma virus transcription enhancer factor II n=2 Tax=Tetrapoda RepID=Q90650_CHICK Length = 298 Score = 92.6 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAE----VLIPGLRVEFCRV 56 ++ K+ G VK F+ ++G GFI +D +++V VH +A + + G VEF V Sbjct: 84 LATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLASVGDGETVEFDVV 143 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 144 EGEKGAEAANV 154 >UniRef50_A4XHY2 Cold-shock DNA-binding protein family n=3 Tax=cellular organisms RepID=A4XHY2_CALS8 Length = 66 Score = 92.6 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 M G VK F+ + G GFI +G +V VH SA + L G VEF V RG A Sbjct: 1 MRGRVKWFNPEKGYGFISTENG-DDVFVHFSAINMEGYKTLAEGQMVEFDVVKSERGNQA 59 Query: 65 ANVY 68 NV Sbjct: 60 VNVR 63 >UniRef50_Q2P2A6 Major cold shock protein n=21 Tax=Gammaproteobacteria RepID=Q2P2A6_XANOM Length = 69 Score = 92.2 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 MS +M GIVK F+ G GFI P G ++ VH A + L G +V F V G + Sbjct: 1 MSERMNGIVKWFNDAKGFGFITPESG-PDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQK 59 Query: 61 GPTAANV 67 G A V Sbjct: 60 GMQADQV 66 >UniRef50_P54584 Cold shock protein n=9 Tax=Bacteria RepID=CSP_ARTGO Length = 67 Score = 92.2 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 30/64 (46%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 G VK F+ + G GFI P D +V VH S + L RV+F G +GP A Sbjct: 3 QGTVKWFNAEKGFGFITPDDSDGDVFVHYSEIQTGGFKTLDENARVQFEIGQGAKGPQAT 62 Query: 66 NVYL 69 V L Sbjct: 63 GVTL 66 >UniRef50_A5BWB0 Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=A5BWB0_VITVI Length = 189 Score = 91.9 bits (227), Expect = 5e-18, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 S++ TG VK F + G GFI P DG +++ VH ++ L G VEF +G G Sbjct: 4 SKRSTGTVKWFSGQKGFGFIAPDDGGEDLFVHQTSIRSDGFRTLSEGETVEFAVDHGEDG 63 Query: 62 -PTAANV 67 A V Sbjct: 64 RTKAVEV 70 >UniRef50_P41824 Y-box factor homolog n=1 Tax=Aplysia californica RepID=YBOXH_APLCA Length = 253 Score = 91.9 bits (227), Expect = 5e-18, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ +++G VK F+ KSG GFI D +++V VH +A + + G +VEF V Sbjct: 29 IASQVSGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVV 88 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 89 EGEKGNEAANV 99 >UniRef50_UPI000155BE86 PREDICTED: hypothetical protein, partial n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155BE86 Length = 223 Score = 91.9 bits (227), Expect = 5e-18, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ K+ G VK F+ ++G GFI +D +++V VH +A + + G VEF V Sbjct: 56 VATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 115 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 116 EGEKGAEAANV 126 >UniRef50_C7Q9X4 Cold-shock DNA-binding domain protein n=31 Tax=Bacteria RepID=C7Q9X4_CATAD Length = 68 Score = 91.9 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 27/61 (44%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G VK F+ + G GFI G +V H S L G RV F G +GP A N Sbjct: 4 GTVKWFNAEKGFGFIEQDGGGADVFAHFSNIAADGYRELQEGQRVSFEVTQGQKGPQAVN 63 Query: 67 V 67 + Sbjct: 64 I 64 >UniRef50_A4VMZ2 Cold shock protein CspA n=2 Tax=Gammaproteobacteria RepID=A4VMZ2_PSEU5 Length = 136 Score = 91.9 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M+ + TG VK F+ G GFI +G +V VH A L G +VEF + G + Sbjct: 68 MAERETGTVKWFNDAKGYGFIQRGNGA-DVFVHYRAIRGDGHRSLAEGQQVEFSVIQGQK 126 Query: 61 GPTAANV 67 G A +V Sbjct: 127 GLQAEDV 133 >UniRef50_B7PM92 PIN domain-containing RNA-binding protein, putative n=2 Tax=Ixodes scapularis RepID=B7PM92_IXOSC Length = 315 Score = 91.9 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ ++ G VK F+ K+G GFI +D R+++ VH +A T + + G VEF V Sbjct: 13 LAERVLGTVKWFNVKNGYGFINRNDTREDIFVHQTAITRNNPQKIMRSVGEGETVEFDVV 72 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 73 VGEKGREAANV 83 >UniRef50_A4VNB0 Cold-shock DNA-binding protein n=75 Tax=Bacteria RepID=A4VNB0_PSEU5 Length = 243 Score = 91.5 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G VK F+ G GFI G +V VH A +L+ G RVEF + +G A + Sbjct: 177 GTVKWFNTSKGFGFISRDSG-DDVFVHFRAIRGEGHRILVEGQRVEFTIMMRDKGLQAED 235 Query: 67 V 67 V Sbjct: 236 V 236 >UniRef50_A4FKV9 Putative DNA-binding protein n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FKV9_SACEN Length = 150 Score = 91.5 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 33/64 (51%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG V FD G GFI P G ++V +H S EVL G+RVEF V G +G A Sbjct: 3 TGTVVRFDGIKGYGFIAPDAGGEDVFLHASILDEELKEVLRGGMRVEFEAVPGNQGTKAM 62 Query: 66 NVYL 69 V L Sbjct: 63 TVNL 66 >UniRef50_P72192 Temperature acclimation protein B (Fragment) n=85 Tax=cellular organisms RepID=TAPB_PSEFR Length = 63 Score = 91.5 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 MS++ +G VK F+ + G GFI P G ++ VH A + L G +V F V G + Sbjct: 1 MSQRQSGTVKWFNDEKGFGFITPESG-PDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQK 59 Query: 61 GPTA 64 G A Sbjct: 60 GMQA 63 >UniRef50_B1MZK9 Cold shock protein n=15 Tax=Bacteria RepID=B1MZK9_LEUCK Length = 74 Score = 91.1 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TGIVK + ++ G G+I P G ++V VH + + L G +V + V G + P AA Sbjct: 3 TGIVKIWQKERGYGYITPDAGGEDVFVHFNGIDMPGFKALKQGEKVSYVLVQGYKAPQAA 62 Query: 66 NV 67 V Sbjct: 63 QV 64 >UniRef50_P71478 Cold shock protein 1 n=20 Tax=Firmicutes RepID=CSP1_LACPL Length = 66 Score = 90.7 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G VK F+ G GFI DG +V VH SA + L G +V F + RGP AAN Sbjct: 4 GTVKWFNADKGYGFITGEDG-NDVFVHFSAIQTDGFKTLEEGQKVTFDEESSDRGPQAAN 62 Query: 67 V 67 V Sbjct: 63 V 63 >UniRef50_C6VN45 Cold shock protein CspC n=8 Tax=Firmicutes RepID=C6VN45_LACPJ Length = 66 Score = 90.7 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G VK F+ G GFI +G +V VH SA + L G V F RGP A N Sbjct: 4 GTVKWFNADKGFGFITRENGS-DVFVHFSAIQEDGFKSLDEGQAVNFDVEESDRGPQAVN 62 Query: 67 V 67 V Sbjct: 63 V 63 >UniRef50_D1S746 Cold-shock DNA-binding domain protein n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1S746_9ACTO Length = 165 Score = 90.7 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 +TG V FD G GFI P DG +V VH + D L PG+ VE+ V RGP Sbjct: 7 MLTGKVVRFDEVRGYGFIAPDDGSDDVFVHANMLDG-DKWALTPGVPVEYDAVETERGPK 65 Query: 64 AANVYLS 70 A V +S Sbjct: 66 AVLVRVS 72 >UniRef50_P16989 DNA-binding protein A n=144 Tax=cellular organisms RepID=DBPA_HUMAN Length = 372 Score = 90.3 bits (223), Expect = 1e-17, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ K+ G VK F+ ++G GFI +D +++V VH +A + + G VEF V Sbjct: 87 LATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 146 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 147 EGEKGAEAANV 157 >UniRef50_A0NEN6 AGAP006108-PA n=4 Tax=Culicimorpha RepID=A0NEN6_ANOGA Length = 402 Score = 90.3 bits (223), Expect = 1e-17, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAE----VLIPGLRVEFCRV 56 ++ K+TG+VK F+ KSG GFI D +++V VH SA + + + G +VEF V Sbjct: 84 IATKVTGVVKWFNVKSGYGFINRGDTQEDVFVHQSAIARNNPKKAVRSVGDGEQVEFDVV 143 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 144 IGEKGNEAANV 154 >UniRef50_B5AU39 Y-box protein Lyb1 n=1 Tax=Lethenteron japonicum RepID=B5AU39_LAMJA Length = 331 Score = 90.3 bits (223), Expect = 1e-17, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ K+ G VK F+ ++G GFI +D +++V VH +A + + G VEF V Sbjct: 21 IATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVV 80 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 81 EGEKGAEAANV 91 >UniRef50_C9Y043 Cold shock-like protein cspD n=3 Tax=Enterobacteriaceae RepID=C9Y043_CROTZ Length = 99 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 26/60 (43%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK F+ G GFI P G +++ H S L G V F G +G A+ Sbjct: 26 TGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQVVRFDVHQGPKGNHAS 85 >UniRef50_B4S1R6 Stress response protein CspD n=5 Tax=cellular organisms RepID=B4S1R6_ALTMD Length = 72 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 28/61 (45%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G VK F+ G GFI+P DG +++ H S L G V F G +G A N Sbjct: 4 GKVKWFNNAKGFGFIVPEDGGEDIFAHYSTIQMEGYRSLKAGQEVTFEVQQGPKGLHAEN 63 Query: 67 V 67 + Sbjct: 64 I 64 >UniRef50_Q0BPU3 Cold shock protein n=2 Tax=Alphaproteobacteria RepID=Q0BPU3_GRABC Length = 100 Score = 89.9 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 + G VK F+ G GFI PS G K+V VHISA L G +++F G Sbjct: 32 MLHGTVKWFNPTKGYGFIAPSTGEKDVFVHISAVQRAGLRSLNEGQQLDFEIEQQQNG-R 90 Query: 64 AANVYLS 70 AA V L+ Sbjct: 91 AAAVNLT 97 >UniRef50_P27484 Glycine-rich protein 2 n=5 Tax=Viridiplantae RepID=GRP2_NICSY Length = 214 Score = 89.9 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG- 61 ++ G VK F + G GFI P DG +++ VH S L G VEF +G G Sbjct: 7 QRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDGR 66 Query: 62 PTAANV 67 A +V Sbjct: 67 TKAVDV 72 >UniRef50_Q1J0P4 Cold-shock DNA-binding domain protein n=9 Tax=Bacteria RepID=Q1J0P4_DEIGD Length = 87 Score = 89.9 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGL--RGPTA 64 G VK F+ + G GFI G ++V H SA + + L G VEF G +GP A Sbjct: 4 GKVKWFNAEKGYGFIETE-GSEDVFAHFSAIQAQGFKKLNEGDEVEFEIEPGQRGKGPQA 62 Query: 65 ANVYLS 70 N+ ++ Sbjct: 63 RNIVVT 68 >UniRef50_UPI000051480C PREDICTED: similar to ypsilon schachtel CG5654-PA n=2 Tax=Apocrita RepID=UPI000051480C Length = 279 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ K+TG VK F+ KSG GFI +D +++V VH SA + + G VEF V Sbjct: 20 IANKVTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVV 79 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 80 IGEKGHEAANV 90 >UniRef50_Q3IC55 Cold shock protein n=52 Tax=Bacteria RepID=Q3IC55_PSEHT Length = 68 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK F+ G GFI G +V H SA T + L G RV+F G +GP A Sbjct: 5 TGSVKWFNEAKGFGFIEQESG-PDVFAHFSAITSDGFKTLAEGQRVQFTVTQGQKGPQAE 63 Query: 66 NV 67 N+ Sbjct: 64 NI 65 >UniRef50_B3RZU4 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RZU4_TRIAD Length = 279 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAE----VLIPGLRVEFCRV 56 ++ K++G VK F+ K G GFI D ++V VH +A + + + VEF + Sbjct: 25 VANKVSGKVKWFNVKRGYGFIHRDDTGEDVFVHQTAIQANNPKKYLRSVGDEEVVEFDVL 84 Query: 57 NGLRGPTAANV 67 +G +G AANV Sbjct: 85 SGPKGLEAANV 95 >UniRef50_A1JMC2 Cold shock-like protein cspD (Cold shock-like protein) n=19 Tax=Bacteria RepID=A1JMC2_YERE8 Length = 85 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 27/62 (43%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK F+ G GFI P G +++ H S L G V F G +G A+ Sbjct: 3 TGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQGPKGNHAS 62 Query: 66 NV 67 + Sbjct: 63 LI 64 >UniRef50_Q90WH1 Cold-shock domain protein (Fragment) n=4 Tax=Percomorpha RepID=Q90WH1_ORYLA Length = 366 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRVNGLR 60 + G VK F+ ++G GFI +D +++V VH +A + + G VEF + + Sbjct: 3 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAK 62 Query: 61 GPTAANV 67 G AANV Sbjct: 63 GSEAANV 69 >UniRef50_C4K358 RNA chaperone, transcription antiterminator n=3 Tax=Enterobacteriaceae RepID=C4K358_HAMD5 Length = 69 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M+ K G VK FD+ +G GFI P DG ++ VH +A + LI G VEF Sbjct: 1 MTLK-KGKVKWFDKIAGYGFISPEDGGLDIYVHKAAIANIKDKSLIAGQDVEFSYRVSFH 59 Query: 61 GPTAANVY 68 GP+A +V Sbjct: 60 GPSAEDVI 67 >UniRef50_A4VLV8 Cold-shock protein CspD n=5 Tax=Gammaproteobacteria RepID=A4VLV8_PSEU5 Length = 93 Score = 89.2 bits (220), Expect = 3e-17, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 30/65 (46%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 ++G VK F+ G GFI+ G +++ H SA L G V F + G +G Sbjct: 7 MLSGKVKWFNNAKGYGFIVADGGDEDLFAHYSAIQMEGYRTLKAGQAVMFNILQGPKGLH 66 Query: 64 AANVY 68 A ++ Sbjct: 67 ATDIR 71 >UniRef50_P95459 Major cold shock protein cspA n=33 Tax=cellular organisms RepID=CSPA_PSEAE Length = 69 Score = 89.2 bits (220), Expect = 3e-17, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 MS + G VK F+ G GFI P G ++ VH + + L G +V F VNG + Sbjct: 1 MSNRQNGTVKWFNDAKGFGFITPESG-NDLFVHFRSIQGTGFKSLQEGQKVSFVVVNGQK 59 Query: 61 GPTAANVYL 69 G A V + Sbjct: 60 GLQADEVQV 68 >UniRef50_Q9Y2T7 Y-box-binding protein 2 n=21 Tax=Tetrapoda RepID=YBOX2_HUMAN Length = 364 Score = 88.8 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ ++ G VK F+ ++G GFI +D +++V VH +A + + G VEF V Sbjct: 90 LAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVV 149 Query: 57 NGLRGPTAANV 67 G +G A NV Sbjct: 150 EGEKGAEATNV 160 >UniRef50_C8P136 Conserved domain protein n=6 Tax=Bacteria RepID=C8P136_ERYRH Length = 66 Score = 88.4 bits (218), Expect = 6e-17, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK F+ + G GFI G +++ VH SA + L G V F V G RG AA Sbjct: 3 TGKVKFFNAEKGYGFITIE-GGQDIFVHYSAIVADGYKTLEEGQEVSFEVVEGPRGEQAA 61 Query: 66 NVY 68 NV Sbjct: 62 NVR 64 >UniRef50_Q9AN51 Blr1947 protein n=2 Tax=Bradyrhizobium japonicum RepID=Q9AN51_BRAJA Length = 120 Score = 88.4 bits (218), Expect = 6e-17, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 30/59 (50%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 G VK F+ G GF+ P DG K+V VHISA L+ G +V + V G AA Sbjct: 56 GTVKWFNPTKGYGFVAPDDGGKDVFVHISAVEKAGYTSLVEGAKVGYELVTNRSGKQAA 114 >UniRef50_A1S709 Cold-shock DNA-binding protein family n=6 Tax=cellular organisms RepID=A1S709_SHEAM Length = 70 Score = 88.0 bits (217), Expect = 7e-17, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK F+ + G GF+ D +V VH A + L G +V F V G +G AA Sbjct: 7 TGTVKWFNDEKGFGFLSR-DNDSDVFVHYRAINTQGRRTLKEGQKVSFSLVEGQKGLLAA 65 Query: 66 NV 67 NV Sbjct: 66 NV 67 >UniRef50_Q4FT63 Cold-shock DNA-binding protein family n=10 Tax=cellular organisms RepID=Q4FT63_PSYA2 Length = 71 Score = 88.0 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 MS + GIVK F+ G GFI G +++ VH A L G +VEF V G + Sbjct: 1 MSAREQGIVKWFNDSKGFGFIQRDSG-EDIFVHFRAIQGDGYRSLKDGEKVEFSVVEGDK 59 Query: 61 GPTAANVY 68 G A V Sbjct: 60 GLQAEEVR 67 >UniRef50_UPI00004F1407 PREDICTED: similar to CSDA protein n=1 Tax=Bos taurus RepID=UPI00004F1407 Length = 323 Score = 88.0 bits (217), Expect = 8e-17, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 +S+++ G V F K G GFI D +++V VH +A T ++ + G VEF V Sbjct: 64 ISKRVLGTVVWFKEKKGYGFISRQDTQEDVFVHHTAITGKNPCTYRGSVDDGEMVEFDVV 123 Query: 57 NGLRGPTAANV 67 G G AANV Sbjct: 124 QGEWGTEAANV 134 >UniRef50_B8C1C4 Cold-shock DNA-binding domain-containing protein n=1 Tax=Thalassiosira pseudonana RepID=B8C1C4_THAPS Length = 136 Score = 88.0 bits (217), Expect = 9e-17, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP- 62 K+ G VK FD K G GF++P DG EV VH SA L G VEF + G Sbjct: 41 KIKGTVKWFDAKKGFGFLVPDDGSAEVFVHHSAIHANGFRSLGDGEVVEFEVMQEPNGKW 100 Query: 63 TAANV 67 A NV Sbjct: 101 KALNV 105 >UniRef50_C1F531 Cold shock protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F531_ACIC5 Length = 87 Score = 87.6 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 + K G+VK F+ G GFI S G ++V VH SA + L G VEF G + Sbjct: 18 VPVKENGVVKWFNGAKGYGFIQRSTG-EDVFVHFSAIQDSGYKTLNEGEAVEFECQQGPK 76 Query: 61 GPTAANV 67 G AANV Sbjct: 77 GLNAANV 83 >UniRef50_C4WXL4 ACYPI009849 protein n=3 Tax=cellular organisms RepID=C4WXL4_ACYPI Length = 250 Score = 87.6 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 26/62 (41%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 GI K F+ K G GF+ P DG K+V VH L VEF +G A Sbjct: 72 QGICKWFNSKKGFGFVTPDDGGKDVFVHQRVIKKDGFRSLRENEHVEFTCHESDKGLEAT 131 Query: 66 NV 67 V Sbjct: 132 LV 133 >UniRef50_Q01761 Cold shock-like protein 7.0 n=356 Tax=cellular organisms RepID=CSP7_STRCL Length = 66 Score = 86.8 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK F+ + G GFI G +V VH SA L V F +G GP A Sbjct: 3 TGTVKWFNAEKGFGFIAQDGGGPDVFVHYSAINATGFRSLEENQVVNFDVTHGE-GPQAE 61 Query: 66 NV 67 NV Sbjct: 62 NV 63 >UniRef50_C4QN73 Y box binding protein, putative n=4 Tax=Bilateria RepID=C4QN73_SCHMA Length = 167 Score = 86.5 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 M ++ G+VK F+ K+G GFI D ++ VH SA + + L G VEF V Sbjct: 22 MEERVKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVV 81 Query: 57 NGLRGPTAANV 67 G +G A+ V Sbjct: 82 EGDKGDEASEV 92 >UniRef50_A5VRM7 Cold-shock family protein n=37 Tax=Brucellaceae RepID=A5VRM7_BRUO2 Length = 105 Score = 86.5 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 26/55 (47%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 TG VK F+ G GFI P G +V VHISA L G +V + V R Sbjct: 44 TGTVKWFNTTKGFGFIQPDQGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 98 >UniRef50_A1U3R2 Cold-shock DNA-binding protein family n=3 Tax=Marinobacter RepID=A1U3R2_MARAV Length = 179 Score = 86.1 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G VK F+ K G GFI+ G E+ VH A R VL G V F V +G A N Sbjct: 115 GTVKWFNVKKGFGFIVRDSG-DEIFVHFRAIRGRGRRVLRQGQLVRFNVVEADKGLQADN 173 Query: 67 VYL 69 V + Sbjct: 174 VSI 176 >UniRef50_B3EP04 Cold-shock DNA-binding domain protein n=13 Tax=Chlorobiaceae RepID=B3EP04_CHLPB Length = 96 Score = 86.1 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 3/68 (4%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPR-DAEVLIPGLRVEFCRVNGL 59 MSRK VK FD K G GFI+ DG +++ VH SA +VL VEF Sbjct: 1 MSRK--SKVKWFDGKKGYGFIVNPDGGEDIFVHFSAIVSEQSFKVLNQDAEVEFEIDQTQ 58 Query: 60 RGPTAANV 67 +G A NV Sbjct: 59 KGMQAKNV 66 >UniRef50_O65639 Glycine-rich protein n=10 Tax=cellular organisms RepID=O65639_ARATH Length = 299 Score = 86.1 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG-PTA 64 TG V F+ G GFI P DG E+ VH S+ L G VEF G G A Sbjct: 12 TGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKTKA 71 Query: 65 ANV 67 NV Sbjct: 72 VNV 74 >UniRef50_D0LU49 Cold-shock DNA-binding domain protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LU49_HALO1 Length = 94 Score = 86.1 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK F+ G GFI+ DG ++V VH S +L G VE+ G +G AA Sbjct: 3 TGAVKWFNNVKGYGFILREDG-QDVFVHWSNILADGYRLLTEGEIVEYELQEGPKGLFAA 61 Query: 66 NVY 68 V Sbjct: 62 QVK 64 >UniRef50_C4QN75 Y box binding protein, putative n=10 Tax=cellular organisms RepID=C4QN75_SCHMA Length = 231 Score = 86.1 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAE----VLIPGLRVEFCRV 56 M ++ G+VK F+ K+G GFI D ++ VH SA + + E L G VEF V Sbjct: 22 MEERVKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVV 81 Query: 57 NGLRGPTAANV 67 G +G A+ V Sbjct: 82 EGDKGDEASEV 92 >UniRef50_Q47TE2 Cold-shock DNA-binding protein family n=9 Tax=Actinobacteria (class) RepID=Q47TE2_THEFY Length = 127 Score = 86.1 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK +D G GF+ DG + V +H SA P L PG RVEF V G +G A Sbjct: 3 TGKVKWYDAGKGFGFLTKDDGGE-VFLHASAL-PPGTTTLRPGQRVEFGIVEGRKGTQAL 60 Query: 66 NVYL 69 V L Sbjct: 61 QVRL 64 >UniRef50_A4RZ32 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RZ32_OSTLU Length = 106 Score = 86.1 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 33/67 (49%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M+ + G VK F+ G GFIIP DG +E+ VH + + + G VE+ + Sbjct: 1 MATRARGKVKWFNATKGFGFIIPHDGSEEIFVHQTGISCAGFRSVWEGEEVEYDVDDTDF 60 Query: 61 GPTAANV 67 P A NV Sbjct: 61 APKAVNV 67 >UniRef50_B5HGK4 Cold shock protein n=10 Tax=Streptomyces RepID=B5HGK4_STRPR Length = 67 Score = 85.7 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 +G+VK F+ + G GFI G +V H S + L+ G +V F G +GPTA Sbjct: 3 SGVVKWFNAEKGFGFIEQDGGGPDVFAHYSNIAAQGFRELLEGQKVNFDIAQGQKGPTAE 62 Query: 66 NV 67 N+ Sbjct: 63 NI 64 >UniRef50_B5X2B2 Y-box-binding protein 2-A n=1 Tax=Salmo salar RepID=B5X2B2_SALSA Length = 328 Score = 85.7 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ + G VK F+ ++G GFI +D +++V VH +A + + G VEF V Sbjct: 26 IATAVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVV 85 Query: 57 NGLRGPTAANV 67 +G AANV Sbjct: 86 EAAKGSEAANV 96 >UniRef50_Q9VRN5 Protein lin-28 homolog n=1 Tax=Drosophila melanogaster RepID=LIN28_DROME Length = 195 Score = 85.7 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 26/61 (42%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G K F+ G GF+ P+DG +EV VH S L VEF RG A Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRGLEATR 100 Query: 67 V 67 V Sbjct: 101 V 101 >UniRef50_Q30QF0 Cold-shock DNA-binding protein family n=12 Tax=Proteobacteria RepID=Q30QF0_SULDN Length = 72 Score = 85.3 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAE--VLIPGLRVEFCRVNG 58 M+ + G VK F+ + G GFI +G K+V VH L G +V F G Sbjct: 1 MAELLDGSVKWFNEEKGYGFIQQENGGKDVFVHFRQVNRTGPGRVSLSEGQKVTFELGEG 60 Query: 59 LRGPTAANV 67 +GP A NV Sbjct: 61 QKGPQAENV 69 >UniRef50_C4RFH3 DNA binding protein n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RFH3_9ACTO Length = 150 Score = 85.3 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 +TG V FD G GFI P G +V VH + D L PG+ VE+ V RGP Sbjct: 1 MLTGRVVRFDEVRGYGFIAPDGGGDDVFVHANTVDG-DKWALGPGVPVEYEAVENERGPK 59 Query: 64 AANVYL 69 A V + Sbjct: 60 ALTVRV 65 >UniRef50_D1H869 Whole genome shotgun sequence of line PN40024, scaffold_23.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1H869_VITVI Length = 208 Score = 85.3 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG-PTA 64 TG+V+ F + G GFI P++G +++ VH S+ L G VEF V G G A Sbjct: 7 TGVVRWFSDQKGFGFITPNEGGEDLFVHQSSIKSDGFRSLGEGETVEFQIVLGEDGRTKA 66 Query: 65 ANV 67 +V Sbjct: 67 VDV 69 >UniRef50_D0MDE8 Cold-shock DNA-binding domain protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MDE8_RHOM4 Length = 95 Score = 85.3 bits (210), Expect = 5e-16, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPR-DAEVLIPGLRVEFCRVNGLRGPTA 64 G+VK FD K G GFII +G ++ VH S + L G VEF G +G A Sbjct: 5 RGVVKWFDAKKGYGFIIHPEGGADIFVHYSQIISERRFKTLRTGQIVEFELHEGPKGLHA 64 Query: 65 ANV 67 NV Sbjct: 65 RNV 67 >UniRef50_UPI0001555D69 PREDICTED: similar to LD37574p, partial n=1 Tax=Ornithorhynchus anatinus RepID=UPI0001555D69 Length = 281 Score = 84.9 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ ++ G+VK F+ + G GFI D +++V +H SA + + G V+F V Sbjct: 32 LATRIVGVVKWFNVRHGYGFICRIDMQEDVFIHQSAIVRNNPRKCQRSVGEGEVVQFDLV 91 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 92 AGAKGTEAANV 102 >UniRef50_A3XD40 Cold shock family protein n=5 Tax=Rhodobacteraceae RepID=A3XD40_9RHOB Length = 120 Score = 84.9 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 29/64 (45%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 + TG VK F+ G GFI P G K+V VHISA L +V F G G Sbjct: 51 TEMATGTVKWFNSTKGFGFIAPDGGTKDVFVHISAVERSGLTGLADNQKVTFDIEPGRDG 110 Query: 62 PTAA 65 AA Sbjct: 111 REAA 114 >UniRef50_P0A970 Cold shock-like protein cspD n=101 Tax=Gammaproteobacteria RepID=CSPD_ECO57 Length = 74 Score = 84.5 bits (208), Expect = 9e-16, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 26/60 (43%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 G VK F+ G GFI P G +++ H S L G V+F G +G A+ Sbjct: 3 KGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHAS 62 >UniRef50_UPI0000F32A39 PREDICTED: Bos taurus similar to transcription factor EF1(A) (LOC783156), mRNA. n=2 Tax=Laurasiatheria RepID=UPI0000F32A39 Length = 313 Score = 84.5 bits (208), Expect = 9e-16, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 5/71 (7%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ K+ G VK F+ ++G GFI +D +++V VH +A + + G EF V Sbjct: 55 IATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGET-EFDVV 113 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 114 EGGKGAEAANV 124 >UniRef50_D1BKC9 Cold shock domain protein CspD n=31 Tax=Bacteria RepID=D1BKC9_SANKS Length = 317 Score = 84.5 bits (208), Expect = 9e-16, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPR--DAEVLIPGLRVEFCRVNGLRGPT 63 G V+ FD + G GF+ DG ++ VH S + L G VEF G RGP Sbjct: 3 QGTVRWFDAERGFGFLALDDGADDLFVHASEIVGNDDGTQSLREGQSVEFEIGEGDRGPQ 62 Query: 64 AANVYLS 70 A V ++ Sbjct: 63 ARRVQIT 69 Score = 72.6 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANV 67 V +D G GF+ P G + VH + A L+ G RV F V G RGP A +V Sbjct: 164 TVSWYDAGKGFGFVTPDSGEPDAFVHARSLAG-GATELVEGDRVSFSVVPGDRGPQAQDV 222 Query: 68 YL 69 + Sbjct: 223 RV 224 Score = 71.4 bits (174), Expect = 7e-12, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 G V ++ G GF+ P G E+ H SA V+ G RV F V G +GP A Sbjct: 82 GTVTWYEPTKGYGFVTPDGGGAEIFAHSSAIVGGG--VIAEGQRVAFLVVEGEKGPQA 137 Score = 68.0 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G+V +D + G GFI P G ++ VH+S + L G RV F RGP A Sbjct: 256 GVVARYDAERGFGFITPDSGGPDLFVHVSVVREG--QELYEGDRVRFQVRQSDRGPQADR 313 Query: 67 VYLS 70 V L+ Sbjct: 314 VDLA 317 >UniRef50_Q38896 Glycine-rich protein 2b n=125 Tax=cellular organisms RepID=GRP2B_ARATH Length = 201 Score = 84.2 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG-PTA 64 G VK FD + G GFI PSDG ++ VH S+ L VEF G P A Sbjct: 16 KGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGRPKA 75 Query: 65 ANV 67 V Sbjct: 76 IEV 78 >UniRef50_B4SCC3 Cold-shock DNA-binding domain protein n=4 Tax=cellular organisms RepID=B4SCC3_PELPB Length = 69 Score = 84.2 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M ++ G VK F+ + G GFI G K+V VH SA + L+ G +V G + Sbjct: 1 MGTQVEGTVKWFNEEKGYGFIE-QKGGKDVFVHHSAINGTGRKTLVEGQKVMMEVTQGAK 59 Query: 61 GPTAANV 67 G A +V Sbjct: 60 GLQAEDV 66 >UniRef50_A9W6T1 Cold-shock protein DNA-binding n=32 Tax=Bacteria RepID=A9W6T1_METEP Length = 281 Score = 83.8 bits (206), Expect = 1e-15, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 38/68 (55%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 S +MTG VK +D G GF+ +DG K+V VH SA + + L G +V V G +G Sbjct: 212 SVEMTGTVKWYDPAKGFGFVSVNDGGKDVFVHRSALSRAGLDSLAEGQQVTLGVVEGQKG 271 Query: 62 PTAANVYL 69 A+++ + Sbjct: 272 REASSITV 279 Score = 66.4 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANV 67 VK F+++ G GF+ DG + +HI A + L+PG R+ G +GP V Sbjct: 81 TVKWFNKEKGFGFVELGDGSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQGQKGPQVTAV 140 Query: 68 Y 68 Sbjct: 141 N 141 >UniRef50_Q4ZRK5 Cold-shock protein, DNA-binding n=10 Tax=Pseudomonas RepID=Q4ZRK5_PSEU2 Length = 92 Score = 83.8 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGR-KEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 + G VK F+ G GFI +++ VH SA + L G +V F +G +G Sbjct: 1 MIEGKVKWFNNAKGFGFINAEGKSDEDLFVHFSAIEMDGYKTLKAGQKVRFEVAHGPKGL 60 Query: 63 TAANVYLS 70 A + S Sbjct: 61 QAIKINSS 68 >UniRef50_C0QFU1 CspA n=4 Tax=cellular organisms RepID=C0QFU1_DESAH Length = 66 Score = 83.8 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G VK F+ G GFI +G ++V VH S + L G +V F G +GP A N Sbjct: 4 GTVKWFNDSKGFGFIEQENG-EDVFVHHSGINASGFKSLNEGDKVTFDIEQGQKGPAATN 62 Query: 67 VYL 69 V + Sbjct: 63 VTV 65 >UniRef50_O13015 Y box protein 2 n=4 Tax=Clupeocephala RepID=O13015_CARAU Length = 297 Score = 83.8 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ + G VK F+ ++G GFI +D +++V VH +A + + G VEF V Sbjct: 17 IATGVEGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVV 76 Query: 57 NGLRGPTAANV 67 +G AANV Sbjct: 77 EAAKGSEAANV 87 >UniRef50_A8I8L3 Cold-shock DNA-binding domain n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8I8L3_AZOC5 Length = 117 Score = 83.0 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG--PT 63 TG VK F+ + G GFI P DG + VHISA L G +V + V R + Sbjct: 50 TGTVKWFNPEKGFGFIAPDDGGADAFVHISAVERAGLPPLREGQKVNYDLVADKRSGKSS 109 Query: 64 AANVYL 69 A+N+ L Sbjct: 110 ASNLTL 115 >UniRef50_B5A4M3 Glycine-rich nucleic acid binding protein n=1 Tax=Gymnochlora stellata RepID=B5A4M3_GYMST Length = 290 Score = 83.0 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG-P 62 + +G K F+ G GFI+P +G+ ++ VH +A L G +VEF G Sbjct: 23 RQSGTCKWFNTVKGYGFILPQEGKDDIFVHQTAIKAVGFRSLAEGEQVEFDVEVDATGRK 82 Query: 63 TAANV 67 A NV Sbjct: 83 KARNV 87 >UniRef50_A7HXE8 Putative cold-shock DNA-binding domain protein n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HXE8_PARL1 Length = 199 Score = 83.0 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 34/67 (50%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 +S ++TG+VK FD G GFIIP +G +V VH+S E L G V V + Sbjct: 34 VSFEITGVVKWFDAVKGYGFIIPENGGDDVLVHLSCLKQAGLEALDEGTTVTCEAVRRPK 93 Query: 61 GPTAANV 67 G A V Sbjct: 94 GAQAIRV 100 Score = 61.8 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANV 67 IVK F+R G GF+ +G ++ +H+ L+PG ++ G +G A + Sbjct: 137 IVKWFNRARGYGFVTRGEGTPDIFIHMETLRRYGIRDLLPGQQINVRFGEGPKGLMVAEI 196 >UniRef50_A5N624 CspA n=10 Tax=cellular organisms RepID=A5N624_CLOK5 Length = 67 Score = 83.0 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA-EVLIPGLRVEFCRVNGLRGPTA 64 TG VK F+ + G GFI G +V VH +A +A + L G +V+F G +G A Sbjct: 3 TGTVKWFNSEKGFGFIEVP-GENDVFVHFTAIQSNEARKNLEEGQKVQFDVEEGPKGLQA 61 Query: 65 ANV 67 ANV Sbjct: 62 ANV 64 >UniRef50_O62213 Protein F33A8.3, confirmed by transcript evidence n=2 Tax=Caenorhabditis RepID=O62213_CAEEL Length = 208 Score = 83.0 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRVN 57 + K+ G VK F+ K+G GFI +D +++ VH +A + L V F V Sbjct: 18 ATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVE 77 Query: 58 GLRGPTAANV 67 G +G AA+V Sbjct: 78 GSKGLEAASV 87 >UniRef50_B0UEI2 Cold-shock DNA-binding domain protein n=11 Tax=Alphaproteobacteria RepID=B0UEI2_METS4 Length = 242 Score = 82.6 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 36/69 (52%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 S +M+G VK +D G GF+ DG K+V VH SA + L G +V V G +G Sbjct: 173 STEMSGTVKWYDPAKGFGFVSVKDGGKDVFVHRSALARAGLDSLAEGQQVTMGVVEGQKG 232 Query: 62 PTAANVYLS 70 A ++ ++ Sbjct: 233 REAQSITVA 241 Score = 68.0 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANV 67 VK F+++ G GF+ DG + +HI A L+PG R+ G +GP N+ Sbjct: 65 TVKWFNKEKGFGFVELGDGSGDAFLHIRAVEAAGHADLLPGTRLTVQTAQGQKGPQVTNI 124 >UniRef50_B4RGZ9 Cold-shock DNA-binding domain protein n=75 Tax=Bacteria RepID=B4RGZ9_PHEZH Length = 250 Score = 82.6 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 + R +G VK F+ G GFI P DG ++V VHISA + L G +VE+ R Sbjct: 53 LRRMASGTVKWFNTAKGFGFIQPDDGGQDVFVHISAVAQAGLDALNEGDQVEYELEQDRR 112 Query: 61 -GPTAANVYL 69 G AA + Sbjct: 113 SGKLAATSIV 122 Score = 79.1 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG--PT 63 +G+VK F+ G GFI P G +++ VHISA L G V+F R + Sbjct: 183 SGVVKWFNPTKGFGFIKPEGGGQDIFVHISAVEQAGLSGLNEGQTVDFDLEQDRRSGKTS 242 Query: 64 AANVYLS 70 A N+ ++ Sbjct: 243 ATNLKIT 249 >UniRef50_C4FWF1 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FWF1_9FIRM Length = 90 Score = 82.2 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 + G VK F+ G GFI DG +V VH S + L G V + RG Sbjct: 25 MLNGTVKFFNVDKGFGFIAGQDG-VDVFVHFSNIQADGFKTLNEGQTVSYDVQETSRGLQ 83 Query: 64 AANV 67 A NV Sbjct: 84 AINV 87 >UniRef50_Q11GE9 Cold-shock DNA-binding protein family n=10 Tax=Alphaproteobacteria RepID=Q11GE9_MESSB Length = 70 Score = 82.2 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGL--RGP 62 TG VK F+ G GFI P +G+K+V VHISA L+ G +V F +GP Sbjct: 3 QTGTVKFFNATKGFGFITPDNGQKDVFVHISAVEASGMRSLVDGQKVSFDVEPDRMGKGP 62 Query: 63 TAAN 66 A N Sbjct: 63 KAVN 66 >UniRef50_D0KX28 Cold-shock DNA-binding domain protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KX28_HALNC Length = 143 Score = 82.2 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G VK F+ G GFI+ +G +++ VH A L+ G +VE+ G +GP A Sbjct: 80 GHVKWFNTDKGFGFIVRENG-EDLFVHFRAVGDGSTLQLVEGQKVEYHIGQGRKGPQAEQ 138 Query: 67 VYL 69 V + Sbjct: 139 VVI 141 >UniRef50_D1AYL8 Cold-shock DNA-binding domain protein n=3 Tax=cellular organisms RepID=D1AYL8_STRM9 Length = 65 Score = 81.8 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 M G VK F+ K G GFI DG K+ +H S + + G VEF +G +GP A Sbjct: 1 MLGKVKWFNEKKGFGFISGEDG-KDYFLHFSKINKGGFKTVNEGEEVEFDIEDGEKGPQA 59 Query: 65 ANV 67 NV Sbjct: 60 TNV 62 >UniRef50_B7RWZ3 'Cold-shock' DNA-binding domain protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RWZ3_9GAMM Length = 145 Score = 81.8 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G VK F+ G GFI DG +E+ VH + L G RV F N +GP A N Sbjct: 83 GEVKWFNVSKGFGFITKDDG-EEIFVHFRSIIGEGRRGLKDGQRVSFVEANTDKGPQAEN 141 Query: 67 V 67 V Sbjct: 142 V 142 >UniRef50_Q4H2L8 Y-box protein 1/2/3 n=2 Tax=Ciona intestinalis RepID=Q4H2L8_CIOIN Length = 320 Score = 81.8 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 5/72 (6%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAE----VLIPGLRVEFCRV 56 ++ +G+VK F+ ++G GF+ D +++V +H +A + + + G VEF V Sbjct: 22 LASHCSGVVKWFNVRNGYGFVNRDDNKEDVFIHQTAIIKNNPKKYLRSVGDGENVEFDVV 81 Query: 57 NGLRG-PTAANV 67 G +G P AANV Sbjct: 82 EGEKGLPEAANV 93 >UniRef50_B0S1I2 Cold shock protein n=4 Tax=cellular organisms RepID=B0S1I2_FINM2 Length = 67 Score = 81.8 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRD-AEVLIPGLRVEFCRVNGLRGPTA 64 G VK F+ G GFI D +V VH +A L VEF G +G A Sbjct: 3 KGKVKWFNATKGFGFISTEDQG-DVFVHYTAIEDNGEYRKLEENQEVEFEISEGPKGLQA 61 Query: 65 ANVY 68 NV Sbjct: 62 CNVK 65 >UniRef50_Q1RLA8 Zinc finger protein n=1 Tax=Ciona intestinalis RepID=Q1RLA8_CIOIN Length = 193 Score = 81.5 bits (200), Expect = 7e-15, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 7 GIVKTFDRKSGKGFIIPSDGRK---EVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 G K F+ K G GFI P + +V VH S+ L G RV+F +G Sbjct: 29 GNCKWFNSKQGYGFITPDTSSQEKTDVFVHQSSIDMEGFRSLQEGDRVKFWYKPSKKGLE 88 Query: 64 AANV 67 A V Sbjct: 89 AVKV 92 >UniRef50_D1A5P8 Cold-shock DNA-binding domain protein n=33 Tax=Actinobacteridae RepID=D1A5P8_THECD Length = 135 Score = 81.5 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK +D G GF+ DG + V VH SA P L G RVEF V G RG A Sbjct: 7 TGKVKWYDAGKGFGFLTRDDGGE-VFVHSSAL-PSGVTSLKTGQRVEFGVVEGRRGQQAL 64 Query: 66 NVY 68 +V Sbjct: 65 SVR 67 >UniRef50_B9KKC8 Cold-shock DNA-binding protein family n=21 Tax=Rhodobacteraceae RepID=B9KKC8_RHOSK Length = 83 Score = 81.1 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 32/60 (53%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK F+ G GFI P DG K+V VHISA + L ++ + +G G ++A Sbjct: 18 TGTVKWFNSTKGFGFIAPDDGGKDVFVHISAVERAGLKGLSDNQKIGYELQSGRDGRSSA 77 >UniRef50_D0MCR5 Cold-shock DNA-binding domain protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MCR5_RHOM4 Length = 76 Score = 81.1 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRD-AEVLIPGLRVEFCRVNGLRGPT 63 G VK F+ G GFI P+DG K+V VH + E L G V + +G + Sbjct: 3 QRGRVKWFNIDKGYGFIEPNDGSKDVFVHRNNVPGLGWDEGLREGEEVSYEVERTPKGLS 62 Query: 64 AANV 67 A NV Sbjct: 63 AMNV 66 >UniRef50_UPI00017B0A95 UPI00017B0A95 related cluster n=1 Tax=Tetraodon nigroviridis RepID=UPI00017B0A95 Length = 321 Score = 80.3 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 5/72 (6%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ + G VK F+ ++G GFI +D +++V VH +A + + G VEF + Sbjct: 26 IATLVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGELVEFDVI 85 Query: 57 NGL-RGPTAANV 67 +G AANV Sbjct: 86 EAAKKGSEAANV 97 >UniRef50_Q5CVY2 Cold shock RNA binding domain of the OB fold (Fragment) n=2 Tax=Cryptosporidium RepID=Q5CVY2_CRYPV Length = 135 Score = 80.3 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG-PT 63 ++G+ K FD G GFI P DG +++ VH L RVE+ +G Sbjct: 11 LSGVCKWFDSTKGFGFITPDDGSEDIFVHQQNIKVEGFRSLAQDERVEYEIETDDKGRRK 70 Query: 64 AANV 67 A NV Sbjct: 71 AVNV 74 >UniRef50_Q23960 Y-box protein n=1 Tax=Dugesia japonica RepID=Q23960_DUGJA Length = 266 Score = 80.3 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRVNGLR 60 +TG VK F+ K G GF+ +D ++++ +H SA + + + G + F V G + Sbjct: 29 ITGKVKWFNVKRGYGFVCRNDNQEDIFIHQSAIVKSNPDHPRKSVGEGEEILFDIVKGAK 88 Query: 61 GPTAANV 67 G AANV Sbjct: 89 GNEAANV 95 >UniRef50_Q9Z3S6 Cold shock protein cspA n=72 Tax=Bacteria RepID=CSPA_RHIME Length = 69 Score = 80.3 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR-GPTA 64 +G VK F+ G GFI P DG +V VH SA L+ G +V + V + G ++ Sbjct: 3 SGTVKWFNSTKGFGFIQPDDGATDVFVHASAVERAGMRSLVEGQKVTYDIVRDTKSGKSS 62 Query: 65 AN 66 A+ Sbjct: 63 AD 64 >UniRef50_P55390 Probable cold shock protein y4cH n=110 Tax=Proteobacteria RepID=Y4CH_RHISN Length = 69 Score = 79.9 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 21/55 (38%), Positives = 27/55 (49%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 TG VK F+ G GFI P DG +V VHISA L G ++ + V + Sbjct: 4 TGTVKWFNATKGFGFIQPDDGSADVFVHISAVERAGLRELKDGQKISYELVKDRK 58 >UniRef50_A1U1H2 Cold-shock DNA-binding protein family n=5 Tax=Gammaproteobacteria RepID=A1U1H2_MARAV Length = 103 Score = 79.5 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 G VK F+ G GFII ++ H S+ + L G V F + +G A Sbjct: 3 RGKVKWFNNAKGYGFIIEDGCSDDLFAHFSSVQMDGYKTLKAGQTVTFDKKPSDKGVHAI 62 Query: 66 NV 67 N+ Sbjct: 63 NI 64 >UniRef50_Q2S0T4 Conserved domain protein n=2 Tax=Bacteria RepID=Q2S0T4_SALRD Length = 110 Score = 78.8 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTP-RDAEVLIPGLRVEFCRVNGLRGPTA 64 T VK FD K G GFI D ++V VH S D + L V F +G +G A Sbjct: 3 TSTVKWFDAKKGYGFIHHPDDGEDVFVHYSNIQSDDDFKTLKSDQHVRFEMNDGPKGLHA 62 Query: 65 ANV 67 V Sbjct: 63 LEV 65 >UniRef50_P91306 Y-box protein 2 n=6 Tax=Caenorhabditis RepID=P91306_CAEEL Length = 267 Score = 78.8 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 5/72 (6%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTP---RDA--EVLIPGLRVEFCR 55 ++ + G VK + GFI +DG K++ VH +A L V F Sbjct: 62 ITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDL 121 Query: 56 VNGLRGPTAANV 67 V G GP AANV Sbjct: 122 VEGKNGPEAANV 133 >UniRef50_A5VRP5 Cold-shock family protein n=37 Tax=Brucellaceae RepID=A5VRP5_BRUO2 Length = 83 Score = 78.4 bits (192), Expect = 6e-14, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGL--RGP 62 TG VK F+ + G GFI P DG ++ VHISA L +V + +GP Sbjct: 15 QTGQVKFFNTEKGFGFIKPDDGGADIFVHISAVQASGLPGLADNQKVSYETEPDRRGKGP 74 Query: 63 TAANVYLS 70 A N+ ++ Sbjct: 75 KAVNITIT 82 >UniRef50_B1Z823 Cold-shock DNA-binding domain protein n=34 Tax=Alphaproteobacteria RepID=B1Z823_METPB Length = 69 Score = 78.4 bits (192), Expect = 6e-14, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR-GPTA 64 TG VK F+ G GFI P +G K+V VHISA L+ G ++ + + R G A Sbjct: 3 TGTVKWFNETKGYGFIQPDNGGKDVFVHISAVERAGLRNLVEGQKISYEVLTDKRSGKDA 62 Query: 65 A 65 A Sbjct: 63 A 63 >UniRef50_A8ILK3 Cold shock protein n=9 Tax=Proteobacteria RepID=A8ILK3_AZOC5 Length = 237 Score = 78.4 bits (192), Expect = 6e-14, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 33/69 (47%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 + + G VK ++ + G GFI G K+V VH++ + L G RV G +G Sbjct: 168 TEERVGTVKWYNPEKGFGFIAVEGGGKDVFVHVTVVSRSGLADLSEGQRVVVQVGQGPKG 227 Query: 62 PTAANVYLS 70 P A + ++ Sbjct: 228 PEARGIEVA 236 Score = 66.0 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 + VK F+ + G GF+ SDG +V +H A E + PG ++ G +G Sbjct: 66 IEATVKWFNPEKGFGFVELSDGSGDVFLHARALEAAGQESVPPGSKLSVRVGQGQKGRQV 125 Query: 65 ANV 67 V Sbjct: 126 TEV 128 >UniRef50_A4A3Y7 Cold-shock domain family protein n=2 Tax=unclassified Gammaproteobacteria RepID=A4A3Y7_9GAMM Length = 189 Score = 78.0 bits (191), Expect = 9e-14, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G VK F+ G GFII +G E+ VH + L G V + V +GP A Sbjct: 126 GTVKWFNGTKGFGFIIRENG-DEIFVHHRSIIGEGRRSLRDGAPVRYRVVTTDKGPQAEE 184 Query: 67 V 67 V Sbjct: 185 V 185 >UniRef50_A0R441 'Cold-shock' DNA-binding domain protein n=18 Tax=Actinomycetales RepID=A0R441_MYCS2 Length = 149 Score = 77.6 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 2/64 (3%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK +D + G GF+ DG ++V V SA P E L G RVEF G RGP A Sbjct: 16 TGKVKWYDAEKGFGFLSQEDG-EDVYVRSSAL-PAGVEALKSGQRVEFGVAAGRRGPQAL 73 Query: 66 NVYL 69 ++ L Sbjct: 74 SLKL 77 >UniRef50_B8KR01 'Cold-shock' DNA-binding domain protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KR01_9GAMM Length = 123 Score = 77.6 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 G +K F+ G GFI DG + V VH + PG RV + RGP A Sbjct: 60 KGSIKWFNATKGFGFITGDDGNE-VFVHFRNVEQLSKREIKPGQRVAYRVTETERGPQAE 118 Query: 66 NV 67 +V Sbjct: 119 DV 120 >UniRef50_UPI0000D57810 PREDICTED: similar to CG9705 CG9705-PA n=1 Tax=Tribolium castaneum RepID=UPI0000D57810 Length = 121 Score = 77.6 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 5/70 (7%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFC---RVNGL 59 + + G +K+F R+ G GFI P DG +++ VHIS D + IPG RV++ Sbjct: 40 QNLYGEIKSFCREKGHGFITPEDGSEDIFVHISDI--EDEYIPIPGDRVKYQLCPIPPKF 97 Query: 60 RGPTAANVYL 69 A +V++ Sbjct: 98 EKHQAVHVHI 107 >UniRef50_A4V6J7 Y-Box factor protein (Fragment) n=1 Tax=Dugesia japonica RepID=A4V6J7_DUGJA Length = 178 Score = 77.2 bits (189), Expect = 1e-13, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAF---TPRDAEVLIPGLRVEFCRVNGLRGPT 63 G VK ++ K G GFI D ++V VH SA P + L V F V G +G Sbjct: 5 GKVKWYNVKKGYGFIHRDDVDEDVFVHQSAISRCQPGKQKSLGEDEDVLFDVVKGSKGNE 64 Query: 64 AANV 67 A NV Sbjct: 65 AMNV 68 >UniRef50_D1U4V2 Cold-shock DNA-binding domain protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4V2_9DELT Length = 76 Score = 77.2 bits (189), Expect = 1e-13, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G V F+ K G GFI DG +V VH + + L PG RV + + P A + Sbjct: 5 GKVTWFNDKKGFGFITGDDG-LDVFVHYTEIVRDGFQSLEPGERVSYAVTDEEIAPKAVD 63 Query: 67 VYLS 70 V+L+ Sbjct: 64 VHLA 67 >UniRef50_A8PLB9 'Cold-shock' DNA-binding domain containing protein n=1 Tax=Brugia malayi RepID=A8PLB9_BRUMA Length = 205 Score = 77.2 bits (189), Expect = 1e-13, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 8/71 (11%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVH--------ISAFTPRDAEVLIPGLRVEFCRV 56 G K F+ G GFI P +G +V VH S L G RV F Sbjct: 9 QVGTCKWFNVLKGYGFITPDEGGDDVFVHQASGVFFIQSELNMDGFRSLDAGERVRFVIR 68 Query: 57 NGLRGPTAANV 67 G A V Sbjct: 69 RRPEGNEATAV 79 >UniRef50_Q1AWL7 Cold-shock DNA-binding protein family n=2 Tax=cellular organisms RepID=Q1AWL7_RUBXD Length = 197 Score = 76.8 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 S++ G VK FD + G GF++ G +++ VH S DA L G+ VE+ RG Sbjct: 131 SQREQGRVKWFDPEKGYGFLVRP-GGEDLFVHHSEVEG-DASSLGQGVEVEYEVGRNERG 188 Query: 62 PTAANVYL 69 P A V + Sbjct: 189 PNARRVRV 196 >UniRef50_B0T8T3 Cold-shock DNA-binding domain protein n=40 Tax=Bacteria RepID=B0T8T3_CAUSK Length = 179 Score = 76.4 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG--PTA 64 G+VK F+ G GFI P DG ++V VHI+A L G +V + R +A Sbjct: 4 GVVKWFNPAKGFGFIQPEDGGQDVFVHIAAVERSGLSGLNEGDQVTYEMEEDRRSGKTSA 63 Query: 65 ANVYLS 70 N+ ++ Sbjct: 64 GNLRVT 69 Score = 72.6 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG--PTAA 65 +VK F+ G GFI P +G ++ VHISA L G +V + R +A Sbjct: 115 VVKWFNSTKGFGFIQPDNGGGDIFVHISAVERAGLRGLNEGQQVGYELEQDRRSGKTSAG 174 Query: 66 NVYL 69 N+ + Sbjct: 175 NLRI 178 >UniRef50_B3QZU5 Cold shock-like protein n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3QZU5_PHYMT Length = 85 Score = 76.4 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDG-RKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 + K+ G+ + F++ G GF+ D +++ H + L G VEF V G + Sbjct: 10 TEKIKGVCRWFNKDKGFGFLQKLDSDSQDIFFHQTDIKCEGFRSLDEGEEVEFTLVQGEK 69 Query: 61 GPTAANV 67 GP A + Sbjct: 70 GPQAIEI 76 >UniRef50_Q2W0B3 Cold shock protein n=3 Tax=Magnetospirillum RepID=Q2W0B3_MAGSA Length = 200 Score = 76.4 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 33/68 (48%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 + + G+VK F + G GF+ G K+V VH+ A + L G RV GL+G Sbjct: 132 TETVEGVVKFFSAEKGFGFVACDQGGKDVFVHVKALERSGIKTLESGQRVRVTTTLGLKG 191 Query: 62 PTAANVYL 69 P A V + Sbjct: 192 PQADTVAI 199 Score = 68.7 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 ++ VK F+ G GF+ PSDG + +HISA + G + G RGP Sbjct: 48 NVSATVKWFNASKGFGFVAPSDGSPDAFLHISALERAGLTQVAEGATLVVDLGAGQRGPQ 107 Query: 64 AANVY 68 V+ Sbjct: 108 VVMVH 112 >UniRef50_UPI000190F4F4 cold shock protein (CspH) n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. E02-1180 RepID=UPI000190F4F4 Length = 59 Score = 76.4 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 37/48 (77%), Positives = 41/48 (85%) Query: 23 PSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANVYLS 70 P DGRK+VQVHISA + E LIPG+RVEFCR+NGLRGPTAANVYLS Sbjct: 12 PPDGRKDVQVHISACRQHETEALIPGIRVEFCRINGLRGPTAANVYLS 59 >UniRef50_A3YG84 Cold-shock protein CspD n=2 Tax=Marinomonas RepID=A3YG84_9GAMM Length = 92 Score = 76.1 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G VK F+ G GFI+ +++ +H S+ + L G V F G +G A + Sbjct: 4 GTVKWFNNAKGYGFIVSESFEEDLFIHYSSILIDGYKTLKAGQSVSFKTSPGKQGLHAVD 63 Query: 67 V 67 + Sbjct: 64 I 64 >UniRef50_B6QZ94 Cold-shock DNA-binding domain protein n=1 Tax=Pseudovibrio sp. JE062 RepID=B6QZ94_9RHOB Length = 215 Score = 75.7 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGL--RG 61 + +G VK F G GFI P +G +V VHISA L G R+ F +G Sbjct: 121 RQSGTVKFFKLDKGFGFITPDEGENDVFVHISAVERSGLTTLDSGQRISFETEPDRRGKG 180 Query: 62 PTAANVYL 69 P A + L Sbjct: 181 PKAVELRL 188 >UniRef50_Q5YVF2 Putative cold shock protein n=1 Tax=Nocardia farcinica RepID=Q5YVF2_NOCFA Length = 122 Score = 75.7 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 23/62 (37%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G V FD + G GFI P D V V A L+ G V + GP A Sbjct: 54 GTVAWFDAEKGFGFITPDDRSPAVFVEFHAIEAVGYRTLVAGGPVVYRAEETKAGPEAVA 113 Query: 67 VY 68 V Sbjct: 114 VR 115 >UniRef50_Q2S3Y3 'Cold-shock' DNA-binding domain, putative n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3Y3_SALRD Length = 69 Score = 75.7 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK F G GF+ P +G +V +H S D L G R+EF +G A Sbjct: 3 TGTVKWFSPAEGYGFVEPDNGEDDVFLHHSEVPDED---LEEGDRLEFEIEETEKGLNAV 59 Query: 66 NV 67 N+ Sbjct: 60 NI 61 >UniRef50_A0ACJ4 Putative DNA-binding protein n=2 Tax=Streptomyces RepID=A0ACJ4_STRAM Length = 172 Score = 75.3 bits (184), Expect = 6e-13, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G + FD G GFI P +G ++V +H++ D +L PG++VEF G RG A+ Sbjct: 9 GKIIRFDEFRGYGFIAPDNGGEDVFIHVNDLAF-DKRLLGPGMKVEFDVEEGDRGLKASR 67 Query: 67 VYL 69 V + Sbjct: 68 VRI 70 >UniRef50_B9JZ17 Cold shock protein n=106 Tax=Alphaproteobacteria RepID=B9JZ17_AGRVS Length = 71 Score = 75.3 bits (184), Expect = 6e-13, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGL--RGPT 63 TGIVK F+ G GFI P +G ++ VHISA L +V F +GP Sbjct: 4 TGIVKFFNNDKGFGFIKPDNGGADIFVHISAVQASGLNGLSENQKVSFDTEPDRRGKGPK 63 Query: 64 AANVYLS 70 A N+ ++ Sbjct: 64 AVNLQIA 70 >UniRef50_B4SFC0 Cold-shock DNA-binding domain protein n=1 Tax=Pelodictyon phaeoclathratiforme BU-1 RepID=B4SFC0_PELPB Length = 74 Score = 74.9 bits (183), Expect = 7e-13, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 31/64 (48%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK F++ G GFIIP +G +V VHI+ L +V++ V A Sbjct: 9 TGTVKWFNKMKGFGFIIPDNGGADVFVHINELEKSGLATLNEADKVKYDMVEKNGKVAAG 68 Query: 66 NVYL 69 N+ L Sbjct: 69 NIQL 72 >UniRef50_B6IXJ6 Cold shock-like protein CspA n=1 Tax=Rhodospirillum centenum SW RepID=B6IXJ6_RHOCS Length = 199 Score = 74.9 bits (183), Expect = 7e-13, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 28/66 (42%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 ++ G VK F G GF+ DG K+V VH S E L G RV +G Sbjct: 132 ELEGSVKWFKDDKGFGFVTTDDGGKDVFVHKSILRRAGLESLQSGERVLMRVTEAPKGRE 191 Query: 64 AANVYL 69 A + L Sbjct: 192 ATWIQL 197 Score = 67.2 bits (163), Expect = 1e-10, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 25/59 (42%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 + VK F+ G GF+ P+DG + +H S + L G V G +GP Sbjct: 43 VRATVKWFNGVKGFGFVAPADGTPDAFLHASVLSRVGLSDLAEGAEVMVVIGPGPKGPQ 101 >UniRef50_UPI0000589074 PREDICTED: similar to ENSANGP00000011455 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000589074 Length = 234 Score = 74.5 bits (182), Expect = 9e-13, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 21/62 (33%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 G K F GF+ P DG +V VH L VE+ +G A Sbjct: 64 RGKCKWFSLAKCYGFLTPDDGSGDVFVHQRVIKMVGYRSLDTNEEVEYKFQFSEKGREAT 123 Query: 66 NV 67 V Sbjct: 124 TV 125 >UniRef50_P46449 Cold shock-like protein cspD n=53 Tax=Bacteria RepID=CSPD_HAEIN Length = 72 Score = 74.5 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 26/62 (41%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 GIVK F+ G GFI ++ H S L G +V+F ++ +G A Sbjct: 4 GIVKWFNNAKGFGFISAEGVDADIFAHYSVIEMDGYRSLKAGQKVQFEVLHSDKGSHATK 63 Query: 67 VY 68 + Sbjct: 64 II 65 >UniRef50_UPI0001B4CA82 DNA-binding protein n=1 Tax=Streptomyces viridochromogenes DSM 40736 RepID=UPI0001B4CA82 Length = 164 Score = 74.1 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 G+V FD G GFI P +G ++V VH++ L G RV F ++G RG A Sbjct: 3 QGVVVRFDDVKGYGFIAPDNGGEDVFVHVNDLAEPGT-TLTSGTRVVFDVLDGGRGLKAY 61 Query: 66 NVYLS 70 +V L+ Sbjct: 62 DVSLA 66 >UniRef50_Q1RHK6 Cold shock-like protein cspA n=15 Tax=Rickettsia RepID=CSPA_RICBR Length = 70 Score = 74.1 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 30/69 (43%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M+ + G VK F+ GFI +G K+V VH SA L G V F + Sbjct: 1 MTTNIVGKVKWFNPTKNFGFIEQENGGKDVFVHRSAVDAAGLAGLNEGQDVIFDLEDKNG 60 Query: 61 GPTAANVYL 69 +A N+ + Sbjct: 61 KISAVNLRI 69 >UniRef50_Q2NK56 Cold shock protein n=6 Tax=Bacteria RepID=Q2NK56_AYWBP Length = 74 Score = 74.1 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPR--DAEVLIPGLRVEFCRVNGLR 60 +K G + F + G GFII +DG K++ VH S+ + L +VEF G R Sbjct: 4 KKEQGTCRWFSKDKGYGFIISADG-KDIFVHYSSIQTEVFGRKTLNENDKVEFTVKEGDR 62 Query: 61 GPTAANVYL 69 G A +V + Sbjct: 63 GAQAVDVVV 71 >UniRef50_B3DPK3 Cold shock protein n=7 Tax=Bifidobacterium RepID=B3DPK3_BIFLD Length = 79 Score = 73.8 bits (180), Expect = 1e-12, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 4/66 (6%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRD----AEVLIPGLRVEFCRVNGLRG 61 G VK F K G GFI P DG ++V VH + ++L G RVE+ + +G Sbjct: 3 QGTVKFFLAKKGFGFIQPDDGGEDVFVHYAEIKDDGSTNKFKMLYEGDRVEYTPASSGKG 62 Query: 62 PTAANV 67 A +V Sbjct: 63 TQAKDV 68 >UniRef50_A0PKZ5 Cold shock-like protein B CspB n=78 Tax=Actinomycetales RepID=A0PKZ5_MYCUA Length = 184 Score = 73.8 bits (180), Expect = 1e-12, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 2/64 (3%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK +D G GF+ +G ++V V SA P E L G RVEF +G RGP A Sbjct: 53 TGKVKWYDSDKGFGFLSQEEG-EDVYVRSSAL-PAGVEGLKAGQRVEFGIASGRRGPQAL 110 Query: 66 NVYL 69 ++ L Sbjct: 111 SLKL 114 >UniRef50_B9F7B8 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=B9F7B8_ORYSJ Length = 233 Score = 73.8 bits (180), Expect = 1e-12, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 +S ++ G VK FD +G GFI P D +++ +H S+ D L +E +G Sbjct: 2 VSERVKGTVKGFDATNGFGFITPDDDGEDLFIHQSSLKFDDYRSLNDSDVIELSVGSGND 61 Query: 61 GP-TAANV 67 G A +V Sbjct: 62 GRNKAVDV 69 >UniRef50_Q5YWN3 Putative cold shock protein n=1 Tax=Nocardia farcinica RepID=Q5YWN3_NOCFA Length = 130 Score = 73.8 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G + +FD G GFI P DG +V VH++ + E L G EF G RGP A N Sbjct: 6 GKLVSFDSSRGFGFIRPEDGGPDVFVHVNDIGLDEDE-LRQGRVFEFDVTEGDRGPKAIN 64 >UniRef50_Q56922 Major cold shock protein (Fragment) n=404 Tax=Bacteria RepID=CSPA_YEREN Length = 46 Score = 73.8 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 21/46 (45%), Positives = 26/46 (56%) Query: 15 KSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 G GFI P+DG K+V VH SA D + L G +VEF NG + Sbjct: 1 DKGFGFITPADGSKDVFVHFSAIQSNDFKTLDEGQKVEFSIENGAK 46 >UniRef50_D0Z9M8 Cold shock-like protein n=3 Tax=Enterobacteriaceae RepID=D0Z9M8_EDWTE Length = 69 Score = 73.4 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M+ KM G VK +D +G G I P DG ++ V+ + ++L G RVEF G R Sbjct: 1 MTLKM-GFVKWYDPSAGLGVISPLDGGDDLYVNRTGIASARNKLLREGQRVEFSTPRGRR 59 Query: 61 GPTAANVY 68 A +V Sbjct: 60 SQMAEDVI 67 >UniRef50_A3YF52 Cold-shock protein, DNA-binding n=2 Tax=Marinomonas RepID=A3YF52_9GAMM Length = 79 Score = 73.4 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M+ K+ G VK F+ G GFI D +V VH + + L G V F Sbjct: 1 MTDKLKGTVKWFNDSKGVGFIQR-DNEADVFVHYKSIVSEGHKTLKKGQAVSFFITENDF 59 Query: 61 GPTAANVYL 69 G A+ V L Sbjct: 60 GRQASEVAL 68 >UniRef50_Q1YTJ3 Cold shock protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTJ3_9GAMM Length = 89 Score = 73.4 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 27/63 (42%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK F G GFI P +G +E+ H + L RV + +G G A Sbjct: 4 TGRVKWFSNDRGFGFIEPDNGERELFAHHQNIIMEGYKTLKCFQRVTYDVEHGKNGRHAV 63 Query: 66 NVY 68 N+ Sbjct: 64 NII 66 >UniRef50_Q1NG42 Cold shock protein n=3 Tax=Alphaproteobacteria RepID=Q1NG42_9SPHN Length = 153 Score = 73.4 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 30/62 (48%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 + +G VK F+ G GFI DG+ + VHISA L G R++F RG Sbjct: 84 RASGTVKFFNAMKGFGFIQRDDGQPDAFVHISAVERAGMAALNEGDRLDFELEVDRRGKY 143 Query: 64 AA 65 AA Sbjct: 144 AA 145 >UniRef50_A0Z255 Cold shock protein, CspA family-like protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z255_9GAMM Length = 138 Score = 73.0 bits (178), Expect = 2e-12, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G +K F+ G GFI+ DG + V VH + G RV + RGP A Sbjct: 76 GNIKWFNATKGFGFIVGDDGAE-VFVHYRNVEGLTKRSIKQGQRVAYSVRASDRGPQAEG 134 Query: 67 VY 68 V Sbjct: 135 VK 136 >UniRef50_C1E859 Cold-shock protein with RNA binding domain n=2 Tax=Micromonas RepID=C1E859_9CHLO Length = 305 Score = 73.0 bits (178), Expect = 2e-12, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 21/54 (38%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVN 57 K G+V F+ G GF+ DG +V VH S L VEF Sbjct: 43 KYKGVVNWFNVAKGFGFVTRDDGVGDVFVHQSDIYAEGFRSLRDQEPVEFELEP 96 >UniRef50_C0Z2E8 AT4G38680 protein n=103 Tax=cellular organisms RepID=C0Z2E8_ARATH Length = 204 Score = 73.0 bits (178), Expect = 2e-12, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 20/40 (50%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVL 45 G VK FD + G GFI P DG ++ VH S+ L Sbjct: 12 KGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSL 51 >UniRef50_A3VSH0 Cold shock protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VSH0_9PROT Length = 173 Score = 73.0 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 28/67 (41%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 SR++ G VK FD+ G GFI G ++V +H S G V + +G Sbjct: 11 SREIRGFVKWFDQTKGYGFITDEAGGRDVLIHSSCLKQSGRATAPEGAIVTCEAIESEKG 70 Query: 62 PTAANVY 68 A + Sbjct: 71 LQATRII 77 Score = 63.4 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANV 67 VK F R G GF+ ++ +++ VH+ L PG R+ G +G AA + Sbjct: 108 TVKWFSRAKGYGFLTATNANEDIFVHMEVVRAAGLSELQPGQRLRASYGRGTKGLLAAAI 167 >UniRef50_A5VJ42 Cold-shock DNA-binding protein family n=10 Tax=Lactobacillus RepID=A5VJ42_LACRD Length = 67 Score = 73.0 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 3/67 (4%) Query: 4 KMTGIVKTFDRKSGKGFII-PSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 + G VK+FD + G GFI P +G E+ VH S +L P V V G +GP Sbjct: 1 MLKGKVKSFDEQKGWGFITVPHEG--EIFVHYSGIEGTRRRILHPDEEVSLVIVQGQKGP 58 Query: 63 TAANVYL 69 AA+V + Sbjct: 59 QAAHVRV 65 >UniRef50_D2QP83 Cold-shock DNA-binding domain protein n=5 Tax=Bacteroidetes RepID=D2QP83_9SPHI Length = 198 Score = 73.0 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 TG VK F+ G GFI ++ VH+SA + + +V F +G +G A Sbjct: 137 QTGTVKFFNETKGFGFIKSDSSGDDIFVHVSALIDQ----IHENDKVRFSIEHGRKGLNA 192 Query: 65 ANVYL 69 N+ L Sbjct: 193 VNIKL 197 >UniRef50_Q016S2 Putative nucleic acid binding protein (ISS) n=1 Tax=Ostreococcus tauri RepID=Q016S2_OSTTA Length = 125 Score = 73.0 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 6/61 (9%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLI------PGLRVEFCR 55 S + G VK F+ G G+I P DG +V VH SA G VEF Sbjct: 8 SARRRGKVKWFNCTKGFGYITPDDGEPDVFVHQSALKMEGFRRTDGRRFATQGDSVEFDV 67 Query: 56 V 56 Sbjct: 68 E 68 >UniRef50_Q0VN88 Cold-shock domain family protein n=2 Tax=Alcanivorax RepID=Q0VN88_ALCBS Length = 76 Score = 73.0 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 + G VK F+ G GFI+ G +E+ VH A L G +V F RG Sbjct: 10 QQRGEVKWFNPNKGFGFILTDSG-EELFVHFKAVQNGGRRSLRTGTKVRFDTRMSDRGEQ 68 Query: 64 AANVYL 69 A NVY+ Sbjct: 69 ADNVYI 74 >UniRef50_C9NB66 Cold-shock DNA-binding domain protein n=1 Tax=Streptomyces flavogriseus ATCC 33331 RepID=C9NB66_9ACTO Length = 70 Score = 72.6 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 31/64 (48%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G V+ F + G G+I PS G E+ VH SA L+ G V F V RGP A Sbjct: 4 GTVQVFSAEKGYGYIRPSTGGPEIIVHFSAIVEACPVGLVAGQTVSFDIVQRRRGPEAER 63 Query: 67 VYLS 70 V +S Sbjct: 64 VQIS 67 >UniRef50_C8WCQ1 Cold-shock DNA-binding domain protein n=18 Tax=Alphaproteobacteria RepID=C8WCQ1_ZYMMN Length = 303 Score = 72.6 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 29/62 (46%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 K +G VK F+ G GFI DG+ + VHISA L G R+ F RG Sbjct: 234 KSSGTVKFFNAMKGFGFIQRDDGQPDAFVHISAVERAGLPSLNEGDRLSFELEVDRRGKY 293 Query: 64 AA 65 AA Sbjct: 294 AA 295 Score = 69.5 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 20/52 (38%), Positives = 29/52 (55%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVN 57 TG+VK F+ + G GF++ DG ++V VHISA L G + F V+ Sbjct: 137 TGVVKFFNSQKGFGFVVRDDGGEDVFVHISAVEQAGLTGLAEGQPLSFTLVD 188 >UniRef50_A7BYF1 Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7BYF1_9GAMM Length = 189 Score = 72.6 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 M GIV FD+K G GFI ++V VH+ + + L PG +VEF +G +A Sbjct: 1 MEGIVVKFDKKRGFGFIRSDKFSEDVFVHLKNIREQ--QSLSPGQKVEFDTEQTDKGLSA 58 Query: 65 ANVY 68 NV Sbjct: 59 INVI 62 >UniRef50_P92186 Protein lin-28 n=5 Tax=Caenorhabditis RepID=LIN28_CAEEL Length = 227 Score = 72.6 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 + + G K F+ G GF+I +++ VH S + L G RV + G Sbjct: 50 TPRYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNG 109 >UniRef50_C8SGB1 Cold-shock DNA-binding domain protein n=4 Tax=Mesorhizobium RepID=C8SGB1_9RHIZ Length = 199 Score = 72.2 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 30/63 (47%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G VK +D + G GFI P+ G K+ VH +A T L+ G V G +G + Sbjct: 136 GTVKWYDPQKGFGFIAPNKGEKDAFVHATALTRSGISELLEGQMVLVECGQGKKGLEVLS 195 Query: 67 VYL 69 + L Sbjct: 196 IRL 198 Score = 41.0 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 1/61 (1%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANV 67 V F+ G GF+ DG + + + + G R++ RG V Sbjct: 46 EVMWFNAGKGFGFVKLLDGTE-AYLPVRVLEASGTRDVCEGTRLKVTIEERPRGHQVTKV 104 Query: 68 Y 68 Sbjct: 105 R 105 >UniRef50_A9AXX4 Cold-shock DNA-binding domain protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AXX4_HERA2 Length = 197 Score = 71.8 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M+ + TG V FD + GFI G + VH A L+ G V F V G++ Sbjct: 1 MNERSTGTVAWFDPEKSYGFITTHAGAS-LFVHRRAL-GDGRRWLVEGEEVSFVVVRGMK 58 Query: 61 GPTAANVYLS 70 G A +V ++ Sbjct: 59 GDEANDVLVT 68 >UniRef50_C5RAK7 Cold shock protein CspA n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RAK7_WEIPA Length = 69 Score = 71.8 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 K++G VKT+ G GFI G +V VH SA L G V+ V G+RGP Sbjct: 3 KISGYVKTWQSDKGFGFIELK-GEDDVFVHFSAIQTPRVRDLTVGQEVKLVVVQGIRGPQ 61 Query: 64 AANVYL 69 AA V + Sbjct: 62 AAAVEV 67 >UniRef50_Q4SGH3 Chromosome undetermined SCAF14594, whole genome shotgun sequence. (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4SGH3_TETNG Length = 179 Score = 71.4 bits (174), Expect = 7e-12, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 7/69 (10%) Query: 6 TGIVKTFDRKSGKGFII-------PSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNG 58 +G+ K F+ + G GFI P D +V VH S L G +EF Sbjct: 5 SGVCKWFNMRMGFGFISMSSRDGAPLDQNLDVFVHQSKLHMEGFRSLREGEALEFSFKKS 64 Query: 59 LRGPTAANV 67 +G A V Sbjct: 65 SKGLEAVRV 73 >UniRef50_D0LBW3 Cold-shock protein DNA-binding protein n=2 Tax=Corynebacterineae RepID=D0LBW3_GORB4 Length = 164 Score = 71.4 bits (174), Expect = 9e-12, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 ++G V +D G GF+ P G +V +HI+ D L PG +V F RG A Sbjct: 7 VSGKVVHYDTNRGFGFLAPESGGADVFLHINDID-IDESSLKPGAKVSFDVEETDRGAKA 65 Query: 65 ANVYLS 70 NV ++ Sbjct: 66 VNVAVT 71 >UniRef50_D2RAW4 Cold-shock DNA-binding domain protein n=2 Tax=Bifidobacteriaceae RepID=D2RAW4_GARVA Length = 129 Score = 71.1 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G V+ +D + G GFI+ DG K+V + +A P + L G RVEF + G +GP A Sbjct: 4 GRVRWYDTQKGYGFIVGDDG-KDVFLPAAAL-PVTVKSLHKGTRVEFSVIEGRKGPQAMG 61 Query: 67 VYL 69 + + Sbjct: 62 LNV 64 >UniRef50_Q5JKD6 Cold shock domain protein 2-like protein n=1 Tax=Oryza sativa Japonica Group RepID=Q5JKD6_ORYSJ Length = 221 Score = 71.1 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 +S ++ G+VK FD +G FI P DG +++ +H S+ L +E + Sbjct: 2 VSERVKGMVKGFDATNGFSFITPDDGSEDLFIHQSSLKFDGYRSLNDDDVIELSVGSSDD 61 Query: 61 G-PTAANV 67 G A +V Sbjct: 62 GRTKAVDV 69 >UniRef50_B6KPP5 Glycine-rich protein 2, putative n=3 Tax=Toxoplasma gondii RepID=B6KPP5_TOXGO Length = 209 Score = 70.7 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 G K FD K G GFI DG ++ VH + + L G VEF G G Sbjct: 88 QRGHCKWFDSKKGFGFITAEDGT-DLFVHQTEIKAQGFRNLAEGESVEFRVQVGHDGKRK 146 Query: 65 A 65 A Sbjct: 147 A 147 >UniRef50_A8NIV0 'Cold-shock' DNA-binding domain containing protein n=1 Tax=Brugia malayi RepID=A8NIV0_BRUMA Length = 244 Score = 70.7 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 6/69 (8%) Query: 5 MTGIVKTFDRKSGKGFIIPSDG-RKEVQVHISAFTPRD-----AEVLIPGLRVEFCRVNG 58 + G VK + + GFI D +V VH +A L G V F V G Sbjct: 6 VKGKVKWYSVRYHYGFIARDDNKGNDVFVHQTAIAKSRIIKYYLRTLGDGEEVLFDIVQG 65 Query: 59 LRGPTAANV 67 +GP AANV Sbjct: 66 KQGPEAANV 74 >UniRef50_Q4UBG6 Cold shock protein, putative n=2 Tax=Theileria RepID=Q4UBG6_THEAN Length = 95 Score = 70.7 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 ++ G+ K F+ K G GFI +G ++V VH S L +VE + Sbjct: 2 TRLNGVCKWFNNKKGYGFITLENG-EDVFVHQSEIYADGFRSLHENEKVELEVIMDNNRK 60 Query: 63 TAANV 67 A +V Sbjct: 61 KAIHV 65 >UniRef50_Q7NNC3 Gsr0488 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NNC3_GLOVI Length = 65 Score = 70.7 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 27/62 (43%) Query: 9 VKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANVY 68 V+ FD ++G G I D +EV + +A + P V F G GP A NV Sbjct: 2 VRWFDLQAGYGAIARDDTGEEVFLLFTAIPGEGYRTIAPSTAVHFELAQGPSGPVARNVQ 61 Query: 69 LS 70 S Sbjct: 62 KS 63 >UniRef50_UPI0001AEE83B putative DNA binding protein n=2 Tax=Streptomyces RepID=UPI0001AEE83B Length = 159 Score = 70.3 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG + FD G GFI+P++G ++V +H + + G VEF G +GP A+ Sbjct: 4 TGKILRFDEVRGYGFIVPNEGGEDVFMHANDLVDEKY-LYQSGREVEFFEEMGEKGPKAS 62 Query: 66 NVYL 69 + L Sbjct: 63 QIRL 66 >UniRef50_C6C161 Cold-shock DNA-binding domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C161_DESAD Length = 69 Score = 69.5 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 + G+V F+ G GFI+ GR ++ VH S + L G +V F ++ P A Sbjct: 3 LKGVVSWFNDIKGFGFIVDEAGR-DIYVHYSEVLRDGFKTLNVGEKVVFEVIDEDTAPKA 61 Query: 65 ANVYL 69 V + Sbjct: 62 TAVRI 66 >UniRef50_D1XSW6 Cold-shock DNA-binding domain protein n=3 Tax=Streptomyces RepID=D1XSW6_9ACTO Length = 143 Score = 69.5 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G V FD G GFI P G ++V +H++ + + GL VEF +G RG A+ Sbjct: 4 GRVIRFDGMRGYGFIAPEHGGEDVFMHVNDLLIPE-SAVRAGLMVEFEIEDGDRGLKASE 62 Query: 67 VYLS 70 V L+ Sbjct: 63 VRLA 66 >UniRef50_Q17JD9 Putative uncharacterized protein n=1 Tax=Aedes aegypti RepID=Q17JD9_AEDAE Length = 192 Score = 69.5 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAF----TPRDAEVLIPGLRVEF 53 S+++TG VK F+ K G GFI D +++ VH S + + G VEF Sbjct: 31 SKRITGTVKWFNAKDGFGFITRHDTGEDIFVHKSCIFKPNRNHFTKSIGDGEIVEF 86 >UniRef50_A1B0C7 Cold-shock DNA-binding protein family n=28 Tax=Rhodobacterales RepID=A1B0C7_PARDP Length = 197 Score = 69.5 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 27/65 (41%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 RK+ G+VK FD G GF+ DG ++ +H + + G V RG Sbjct: 9 RKIAGVVKWFDGSKGFGFLTDPDGGADILLHANVLRNFGQSSVAEGSHVIAIIQKTPRGM 68 Query: 63 TAANV 67 A V Sbjct: 69 QAVEV 73 Score = 55.6 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 25/60 (41%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANV 67 VK FD+ G GF + +V +H+ L G + V+G RG AA + Sbjct: 107 RVKWFDKAKGFGFANIFADKADVFLHVEVLRHSGFADLAVGEAIALRVVDGRRGMMAAQI 166 >UniRef50_A9KN41 Cold-shock DNA-binding domain protein n=22 Tax=Firmicutes RepID=A9KN41_CLOPH Length = 70 Score = 69.5 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA-EVLIPGLRVEFCRVNGLRGP 62 TG VK +D + G GF+ +DGR +V +H S + + + G + F + +GP Sbjct: 3 NYTGTVKWYDSERGYGFVSTNDGR-DVFLHHSQIKEKGFDKEVHEGESIGFDIIEQEKGP 61 Query: 63 TAANVY 68 A NV+ Sbjct: 62 AAINVH 67 >UniRef50_C0CRT9 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CRT9_9FIRM Length = 77 Score = 69.1 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G VK FD G GFI D KE VH S R L G RV + +G A + Sbjct: 15 GTVKWFDPVKGYGFIA-GDNGKETFVHQSDILMRGFRHLETGERVSYRVKATEKGDKAID 73 Query: 67 VY 68 V Sbjct: 74 VI 75 >UniRef50_Q2RZT3 Conserved domain protein n=2 Tax=Salinibacter ruber DSM 13855 RepID=Q2RZT3_SALRD Length = 75 Score = 68.7 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTP-RDAEVLIPGLRVEFCRVNGLRGPTA 64 G +K FD G GFI P DG ++V +H + + E L G +E+ +G +A Sbjct: 3 KGKLKFFDTSRGFGFIEPLDGSEDVFLHANNISGMTSGEDLREGQTIEYETEQTEKGLSA 62 Query: 65 AN 66 N Sbjct: 63 LN 64 >UniRef50_Q2RQP4 Cold-shock DNA-binding protein family n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RQP4_RHORT Length = 70 Score = 68.7 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK F+ + G GFI P DG + VHISA PG R R R P A+ Sbjct: 3 TGTVKWFNVQKGFGFIAPDDGGSDAFVHISAVERSSDRSP-PGYRCRESRDRKRRWPGAS 61 >UniRef50_B9T6D3 Cellular nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9T6D3_RICCO Length = 266 Score = 68.7 bits (167), Expect = 6e-11, Method: Composition-based stats. Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRD-AEVLIPGLRVEFCR 55 G V F + G GFI P DG +++ VH SA L VEF Sbjct: 15 RGKVVRFSDRKGFGFIKPDDGGEDLFVHHSAIKSDGRYRSLAEDDVVEFTV 65 >UniRef50_Q013V8 Glycogen debranching enzyme (ISS) n=1 Tax=Ostreococcus tauri RepID=Q013V8_OSTTA Length = 141 Score = 68.7 bits (167), Expect = 6e-11, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 7/66 (10%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIP------GLRVEFCRVNGLRG 61 V F+ G G++ P DG ++V VH S + G +EF + R Sbjct: 43 QVTWFNCVRGYGYVRPHDGSEDVFVHQSELQMDGFRSVWEVRLQQAGDEIEFELDDDER- 101 Query: 62 PTAANV 67 A NV Sbjct: 102 RRAKNV 107 >UniRef50_Q9VVA0 Cold shock domain-containing protein CG9705 n=17 Tax=Bilateria RepID=Y9705_DROME Length = 143 Score = 68.4 bits (166), Expect = 6e-11, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 5/69 (7%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEF---CRVNGLRG 61 +TG+VK+F R G GFI P+ G ++V H+S V +PG V++ Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI--EGEYVPMPGDEVKYRLCAIPPKYEK 112 Query: 62 PTAANVYLS 70 A +V +S Sbjct: 113 HQAVHVQIS 121 >UniRef50_A5V9E9 Cold-shock DNA-binding protein family n=2 Tax=cellular organisms RepID=A5V9E9_SPHWW Length = 198 Score = 68.4 bits (166), Expect = 6e-11, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 25/63 (39%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 + + G VK FD G GFI R +V VH S L G R+ V RG Sbjct: 31 AETVVGAVKWFDATRGFGFIATDGDRGDVLVHFSVLRDHGRRTLPEGARIACEVVARDRG 90 Query: 62 PTA 64 A Sbjct: 91 LQA 93 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 IVK F+R G GF++ +++ +H+ L+P R++ G +GP A Sbjct: 136 IVKWFNRLKGYGFLVRDGETQDIFIHMETVRRAGLPDLLPETRMKARIAEGRKGPLAV 193 >UniRef50_Q0APJ7 Cold-shock DNA-binding protein family n=1 Tax=Maricaulis maris MCS10 RepID=Q0APJ7_MARMM Length = 174 Score = 68.4 bits (166), Expect = 7e-11, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANV 67 +VK FD G GF+ + +V +H + E + PG R+E V G +G AA + Sbjct: 109 VVKWFDALRGYGFVTCDNVEGDVFLHAATLRRAGFEDIQPGDRIEVRCVEGPKGALAAEI 168 Query: 68 YLS 70 ++ Sbjct: 169 KVA 171 Score = 58.0 bits (139), Expect = 8e-08, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 ++ G VK +D G GFI SDG ++ +H S +P ++ V G +G Sbjct: 15 ELEGRVKWYDPARGYGFIDASDGEGDILLHASCLRRFGQGPALPNAKIVCKAVQGDKGRQ 74 Query: 64 AA 65 A Sbjct: 75 AV 76 >UniRef50_B2IBA0 Cold-shock DNA-binding domain protein n=2 Tax=Rhizobiales RepID=B2IBA0_BEII9 Length = 205 Score = 68.4 bits (166), Expect = 8e-11, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANV 67 VK F+R G GF+ DG +++ VH+ +L PG + G +G A V Sbjct: 135 KVKWFNRVKGFGFLSRGDGTEDIFVHMEILRRHGISILHPGEELRARFGQGPKGLIAIEV 194 Query: 68 Y 68 Sbjct: 195 R 195 Score = 61.4 bits (148), Expect = 8e-09, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 +++G +K FD G GF++ +G +V +H++A G RV + G +G Sbjct: 32 EISGRIKWFDLVKGYGFVVADNGLGDVLLHVTALRKDGHSKACEGARVVCEAMRGTKGWQ 91 Query: 64 AANVY 68 V Sbjct: 92 VFRVI 96 >UniRef50_B9MXF4 Predicted protein n=2 Tax=Populus trichocarpa RepID=B9MXF4_POPTR Length = 235 Score = 68.0 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPR-DAEVLIPGLRVEFCRVNGLRGPTA 64 TG V F K G GFI P G K++ VH SA L VEF + A Sbjct: 15 TGRVVRFSDKKGFGFIKPDAGDKDLFVHHSAIKSDGGYRTLYEDDVVEFTILLNDDKYQA 74 Query: 65 ANV 67 +V Sbjct: 75 VDV 77 >UniRef50_B9K345 CspA-like protein n=3 Tax=Agrobacterium RepID=B9K345_AGRVS Length = 99 Score = 68.0 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCR-VNGLR 60 TG +K FD G GFI DG +V +H+S T + L PG+R+ + G + Sbjct: 3 TGKLKWFDTTKGYGFITSDDGGPDVFLHLSKVTEANLPTLQPGVRLRYVLGRQGNK 58 >UniRef50_A8M1B3 Cold-shock DNA-binding domain protein n=2 Tax=Salinispora RepID=A8M1B3_SALAI Length = 138 Score = 68.0 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 G + FD G GFI P G +V VH + F + G+RV + V RG A Sbjct: 3 KGTIVRFDDVRGYGFIAPFGGGDDVFVHANDF-GDQRHAVAAGMRVSYEVVQSERGLKVA 61 Query: 66 NVYL 69 +V L Sbjct: 62 SVVL 65 >UniRef50_Q6ZN17 Protein lin-28 homolog B n=13 Tax=Tetrapoda RepID=LN28B_HUMAN Length = 250 Score = 68.0 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 7/69 (10%) Query: 6 TGIVKTFDRKSGKGFII-------PSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNG 58 TG K F+ + G GFI P D +V VH S L G VEF Sbjct: 31 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 90 Query: 59 LRGPTAANV 67 +G + V Sbjct: 91 SKGLESIRV 99 >UniRef50_Q1GT29 Cold-shock DNA-binding protein family n=1 Tax=Sphingopyxis alaskensis RepID=Q1GT29_SPHAL Length = 90 Score = 68.0 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 27/64 (42%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 + G VK F+ G GFI DG + VHI+A + L RV + G G Sbjct: 21 TLMAIGTVKFFNNDKGYGFIENEDGSGDSFVHITAVQAAGMDTLNKEQRVSYELETGKNG 80 Query: 62 PTAA 65 +A Sbjct: 81 KVSA 84 >UniRef50_B0VIQ0 Cold-shock domain family protein n=2 Tax=Bacteria RepID=B0VIQ0_9BACT Length = 74 Score = 68.0 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA---EVLIPGLRVEFCRVN 57 M M G VK F++ G GFII D KE VH + +VL V F + Sbjct: 1 MRFNMKGKVKWFNKNKGYGFIITDDN-KEYFVHWKSIVTNSPRELKVLEQDELVTFDLME 59 Query: 58 GLRGPTAANVY 68 +G A N+ Sbjct: 60 TDKGIQAINII 70 >UniRef50_A9ART0 Cold-shock DNA-binding domain protein n=1 Tax=Burkholderia multivorans ATCC 17616 RepID=A9ART0_BURM1 Length = 193 Score = 68.0 bits (165), Expect = 9e-11, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 3/65 (4%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 M G VK F + G GFI + H+S D G VEF + RGP A Sbjct: 1 MRGTVKWFSKDKGHGFIYGES-AVDYFFHVSDVVGAD--APREGDIVEFDATSNKRGPRA 57 Query: 65 ANVYL 69 A V + Sbjct: 58 ATVRI 62 >UniRef50_B0W4X1 Putative uncharacterized protein n=1 Tax=Culex quinquefasciatus RepID=B0W4X1_CULQU Length = 247 Score = 67.6 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAF----TPRDAEVLIPGLRVEFCRV 56 +++TG VK F+ K G GFI D +++ VH S+ + + G VEF + Sbjct: 50 KRITGTVKWFNVKDGFGFITRHDTGEDLFVHQSSILRPNSRHSVRSVGEGEVVEFGVI 107 >UniRef50_A0PKE1 DNA-binding protein n=2 Tax=Mycobacterium RepID=A0PKE1_MYCUA Length = 135 Score = 67.6 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG + FD G GFI P G ++V +H + G RV F +G RG A Sbjct: 4 TGRIVRFDDVRGYGFIAPDSGGEDVFLHANDLDFDRLLA-KRGTRVSFDIEDGPRGKFAT 62 Query: 66 NVYLS 70 V ++ Sbjct: 63 AVLIT 67 >UniRef50_B7RPT8 Cold shock protein n=1 Tax=Roseobacter sp. GAI101 RepID=B7RPT8_9RHOB Length = 182 Score = 67.2 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG+VK FD G GF++ +G ++ +H++ + G R+E RG A Sbjct: 12 TGLVKWFDPAKGFGFVVSDEGGPDILLHVNVLRNYGQSSVADGARIELTAHETQRGVQAT 71 Query: 66 NVY 68 V+ Sbjct: 72 QVH 74 Score = 58.7 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 25/61 (40%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANV 67 VK FD+ G GF ++ +HI L PG + + G RG AA V Sbjct: 107 RVKWFDKSKGFGFANVFGRSDDIFLHIEVLRQSGLSDLQPGEALALRVIMGERGHMAAEV 166 Query: 68 Y 68 + Sbjct: 167 H 167 >UniRef50_Q0RYK4 Probable cold shock protein CspA n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0RYK4_RHOSR Length = 79 Score = 67.2 bits (163), Expect = 2e-10, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%) Query: 13 DRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANVYLS 70 + + G GF P G V VH S R + L G +E+ G +G A N + Sbjct: 25 NGEKGFGFTAPDGG---VFVHFSEIAGRGFKTLDEGQHMEYEVSQGQKGVQAENAQTT 79 >UniRef50_C6A7D6 Cold shock protein n=5 Tax=Bifidobacteriaceae RepID=C6A7D6_BIFLB Length = 147 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 +G ++ FD K G GFI DG K+V + +A P+ G +VE+ + G RG Sbjct: 18 NMPSGRIRWFDAKKGYGFIAGDDG-KDVFLPQTAL-PQGVRNPRKGAKVEYSVIEGNRGQ 75 Query: 63 TAANVYL 69 A V + Sbjct: 76 VAMGVTM 82 >UniRef50_Q2RWM8 Cold-shock DNA-binding protein family n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RWM8_RHORT Length = 68 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 24/54 (44%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVN 57 +TG + FD +G GFI P DG ++ V + A L G RV + Sbjct: 1 MLTGTITWFDTINGYGFIRPDDGGGDIAVDMPALDRSGLRSLRDGQRVAYRLTR 54 >UniRef50_D2H5S2 Putative uncharacterized protein (Fragment) n=2 Tax=Caniformia RepID=D2H5S2_AILME Length = 276 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 7/69 (10%) Query: 6 TGIVKTFDRKSGKGFII-------PSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNG 58 TG K F+ + G GFI P D +V VH S L G VEF Sbjct: 57 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 116 Query: 59 LRGPTAANV 67 +G + V Sbjct: 117 SKGLESIRV 125 >UniRef50_D2QU65 Cold-shock DNA-binding domain protein n=23 Tax=Bacteroidetes RepID=D2QU65_9SPHI Length = 68 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 TG+VK F+ G GFI+ D +++ VHI+ + RV+F V+G +G Sbjct: 1 MQTGVVKFFNESKGYGFIVEDDTNRDIFVHITGLNGI---TIREKDRVQFEVVDGKKGLN 57 Query: 64 AANVY 68 A V Sbjct: 58 AVKVK 62 >UniRef50_A8L8B0 Cold-shock DNA-binding domain protein n=5 Tax=Actinomycetales RepID=A8L8B0_FRASN Length = 146 Score = 66.4 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 3/65 (4%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVL-IPGLRVEFCRVNGLRGPTA 64 TG V FD G GF+ PSDG ++V +H + + L +PG+ +EF RG A Sbjct: 3 TGKVLRFDHVRGYGFLAPSDGGEDVFLHANDLLVE--KSLVVPGVVMEFEVEESDRGRKA 60 Query: 65 ANVYL 69 + + Sbjct: 61 SAARI 65 >UniRef50_B9T6B7 Cold shock protein, putative n=1 Tax=Ricinus communis RepID=B9T6B7_RICCO Length = 257 Score = 66.0 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 ++ GI+ + + G GFI P+ G +V VH S+ L G+ +E+ + G Sbjct: 108 KRARGILIWYSNEKGYGFIKPNGGGVDVFVHSSSLKSNGHIHLGAGMPLEYETIISNAGK 167 Query: 63 -TAANV 67 A NV Sbjct: 168 LQAINV 173 >UniRef50_Q5Z0N3 Putative cold shock protein n=2 Tax=Bacteria RepID=Q5Z0N3_NOCFA Length = 89 Score = 66.0 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 7 GIVKTFDRKSGKGFIIPSDG-RKEVQVHISAFTPRDAEVLIPGLRVEFCRVNG 58 G V FD G GFI P++G R V V S+ L+ G V F R G Sbjct: 17 GTVAWFDAPKGFGFIEPAEGPRGPVFVDFSSIEMSGYRTLVEGQPVRFVRSAG 69 >UniRef50_Q52287 Major cold shock protein (Fragment) n=22 Tax=cellular organisms RepID=CSPA_PHOPO Length = 46 Score = 66.0 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 20/46 (43%) Query: 15 KSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 + G GFI +G +V VH A + L G +V F G + Sbjct: 1 EKGFGFITQDNGGADVFVHFRAIASEGFKTLAEGQKVSFEVEQGQK 46 >UniRef50_Q1QLF4 Cold-shock DNA-binding protein family n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QLF4_NITHX Length = 68 Score = 65.7 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 TG VK F+ + G GFI P DG ++ +H+ P RVE+ G G Sbjct: 1 MQTGSVKFFNAEKGYGFIQPDDGTPDIFLHVHGLA-DKLRYPCPRDRVEYEVGKGPDG 57 >UniRef50_C0WQD2 Possible cold-shock protein n=3 Tax=Lactobacillus RepID=C0WQD2_LACBU Length = 93 Score = 65.7 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 + + G VKT++ K+G GFI D + +AF D ++PG+RV + V G +GP Sbjct: 22 KMLYGKVKTYNAKNGFGFIT-QDQGDNLFFFKNAFHGEDYSRIVPGIRVSYVVVEGQKGP 80 Query: 63 TAANVYL 69 AA + Sbjct: 81 QAAKAQI 87 >UniRef50_C2E292 Cold-shock protein n=9 Tax=Lactobacillus RepID=C2E292_9LACO Length = 73 Score = 65.7 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 28/64 (43%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK FD +G GFI + V +A + L G RV + G +G Sbjct: 3 TGTVKQFDSAAGFGFIDDDLTKASYFVFYTAIKEAGYKSLEIGQRVRYQLAQGKKGLQCI 62 Query: 66 NVYL 69 NVY+ Sbjct: 63 NVYI 66 >UniRef50_B4RAZ9 Cold-shock DNA-binding domain protein n=6 Tax=Caulobacteraceae RepID=B4RAZ9_PHEZH Length = 202 Score = 65.3 bits (158), Expect = 5e-10, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 26/65 (40%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 VK F+R G GF+I ++ VHI E L PG V G +G A Sbjct: 135 QAKVKWFNRAKGYGFVIRDSQPGDIFVHIETLRRSGMEDLQPGENVMVRFAEGPKGLVVA 194 Query: 66 NVYLS 70 + S Sbjct: 195 EIEAS 199 Score = 63.4 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGR----KEVQVHISAFTPRDAEVLIPGLRVEFCRVNGL 59 ++TG VK FD G GFI+P D K+V +H+++ E + G + V Sbjct: 26 RITGRVKWFDAGKGYGFIVPDDPAQTDLKDVLLHVTSLRSSGREHCLEGSLITCDVVRRP 85 Query: 60 RGPTAANV 67 +G A V Sbjct: 86 KGWQVAEV 93 >UniRef50_Q28PH1 Cold-shock DNA-binding protein family n=11 Tax=Rhodobacterales RepID=Q28PH1_JANSC Length = 181 Score = 65.3 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 26/61 (42%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANV 67 VK FD+ G GF ++V VH+ L PG V V+G RG AA V Sbjct: 116 RVKWFDKAKGFGFANVFGHSEDVFVHVEVLRRSGFTELQPGEAVAMKVVDGPRGRMAAEV 175 Query: 68 Y 68 Sbjct: 176 R 176 Score = 58.0 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 + G+VK FD G GF++ +G ++ +H + + G RV RG A Sbjct: 22 VAGVVKWFDTTKGFGFVLSDEGGPDILLHANVLRSFGRGSIAEGARVMLRTQATGRGLQA 81 Query: 65 ANVY 68 + Sbjct: 82 VEII 85 >UniRef50_B3QHW3 Cold-shock DNA-binding domain protein n=92 Tax=Alphaproteobacteria RepID=B3QHW3_RHOPT Length = 235 Score = 65.3 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 +++G++K FD G GF++P +G +V +H++ + G R+ V +G Sbjct: 68 EISGVIKWFDASKGYGFVVPDNGWPDVLLHVTVLRRDGYQTAYEGARIVVECVQRAKGYQ 127 Query: 64 A 64 A Sbjct: 128 A 128 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 26/60 (43%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANV 67 VK F+R G GF+ +G ++ VH+ L PG V G +G AA + Sbjct: 164 QVKWFNRLRGFGFLTCGEGTPDIFVHMETLRRYGMTELRPGQYVLVRFGPGSKGMMAAEI 223 >UniRef50_A2SHE7 Cold-shock DNA-binding domain n=2 Tax=Betaproteobacteria RepID=A2SHE7_METPP Length = 203 Score = 65.3 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 ++ G +K+++ + G GFI P G +++ VHI AF P G V F G G Sbjct: 2 RLDGKLKSWNDERGFGFIDPVHGGQDIFVHIKAF-PSGTGRPTVGQAVTFEVELGPNGKK 60 Query: 64 AA 65 A Sbjct: 61 RA 62 >UniRef50_Q9XTJ6 Protein Y39A1C.3, confirmed by transcript evidence n=2 Tax=Caenorhabditis RepID=Q9XTJ6_CAEEL Length = 294 Score = 65.3 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 8/71 (11%) Query: 5 MTGIVKTFDRKSGKGFIIPS---DGRKEVQVHISAFTPRDA-----EVLIPGLRVEFCRV 56 + G VK F + GF+ D ++ VH +A T L V F V Sbjct: 89 VKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPVVFDIV 148 Query: 57 NGLRGPTAANV 67 GL+GP AANV Sbjct: 149 EGLKGPEAANV 159 >UniRef50_C6XG83 Cold shock protein n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XG83_LIBAP Length = 78 Score = 64.9 bits (157), Expect = 7e-10, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 3/55 (5%) Query: 6 TGIVKTFDRKSGKGFIIPS---DGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVN 57 G +K ++ G GFI P + +V +H SA L G V + V Sbjct: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQ 58 >UniRef50_Q803L0 Protein lin-28 homolog A n=13 Tax=Euteleostomi RepID=LN28A_DANRE Length = 202 Score = 64.5 bits (156), Expect = 9e-10, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 7/69 (10%) Query: 6 TGIVKTFDRKSGKGFIIPS-------DGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNG 58 +G+ K F+ + G GF+ + D +V VH S L G VEF Sbjct: 35 SGVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKRS 94 Query: 59 LRGPTAANV 67 +G + V Sbjct: 95 SKGLESLQV 103 >UniRef50_A6ESQ3 Cold shock protein n=2 Tax=Bacteroidetes RepID=A6ESQ3_9BACT Length = 63 Score = 64.5 bits (156), Expect = 9e-10, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 4/64 (6%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 GIVK F+ G GFI K+ VHIS + G VEF G +G A Sbjct: 3 KGIVKFFNDSKGFGFITEEGQEKDHFVHISGLIDE----VREGDEVEFELKEGNKGLNAV 58 Query: 66 NVYL 69 NV + Sbjct: 59 NVRV 62 >UniRef50_Q9EZJ7 Cold shock-like protein CspE (Fragment) n=1 Tax=Brucella abortus RepID=Q9EZJ7_BRUAB Length = 121 Score = 64.5 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSD-GRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 S K++G +K FD G GFI+P G ++ +H+++ + + G R+ +G R Sbjct: 23 SLKVSGHIKWFDVAKGYGFIVPDQPGLTDILLHVTSLRRDGFQTALEGARIVCEVRHGDR 82 Query: 61 GPTAANV 67 G V Sbjct: 83 GLQCFRV 89 >UniRef50_B7G5B5 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G5B5_PHATR Length = 286 Score = 64.1 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 7/71 (9%) Query: 4 KMTGIVKTFDRKSGKGFIIPSD----GRKEVQVHISAFTPRD-AEVLIPGLRVEFCRV-N 57 K+ G VK FD + G GF+ P+ +E+ VH ++ L+ +EF Sbjct: 3 KVQGTVKWFDSRKGYGFVAPTSDNSPTAEEIFVHQTSIQSEGAYRTLVENSEIEFDVEKE 62 Query: 58 GLRGP-TAANV 67 G A NV Sbjct: 63 AESGKFKAINV 73 >UniRef50_Q1AY27 Cold-shock DNA-binding protein family n=10 Tax=Bacteria RepID=Q1AY27_RUBXD Length = 69 Score = 64.1 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 G VK F + G GFI G +EV VH + L G VE+ V G Sbjct: 3 RGRVKWFSGEKGFGFIETESG-EEVLVHYTEIKGEGFRALEEGAEVEYAAVKTEDG 57 >UniRef50_Q6PHF1 Calcium regulated heat stable protein 1 n=2 Tax=Euteleostomi RepID=Q6PHF1_DANRE Length = 155 Score = 63.7 bits (154), Expect = 1e-09, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCR 55 +G+ K F R G GFI PSDG ++ VHIS V + G V + Sbjct: 72 SGVCKCFSRSKGHGFITPSDGGNDIFVHISDIDGE--YVPVEGDEVCYKI 119 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q4KEW6 Cold shock protein capa n=14 Tax=Bacteria RepID=... 105 5e-22 UniRef50_Q7NT55 Cold shock transcription regulator protein n=1 T... 105 5e-22 UniRef50_Q88P68 Cold-shock domain family protein n=52 Tax=Bacter... 105 5e-22 UniRef50_P36995 Cold shock-like protein cspB n=24 Tax=Bacteria R... 103 2e-21 UniRef50_P58726 Cold shock-like protein cspJ n=322 Tax=cellular ... 103 3e-21 UniRef50_A9IR63 Cold shock-like protein n=13 Tax=cellular organi... 102 3e-21 UniRef50_Q08VT0 Conserved domain protein n=3 Tax=Bacteria RepID=... 102 5e-21 UniRef50_A4G7K9 Cold shock protein CspD n=3 Tax=Bacteria RepID=A... 101 7e-21 UniRef50_B5Y9M2 Conserved domain protein n=20 Tax=Bacteria RepID... 101 7e-21 UniRef50_Q0JY13 Cold shock protein, DNA-binding n=2 Tax=Burkhold... 100 2e-20 UniRef50_P0A363 Cold shock-like protein cspB n=58 Tax=Enterobact... 100 2e-20 UniRef50_A3BPB0 Putative uncharacterized protein n=4 Tax=Oryza s... 100 3e-20 UniRef50_B3PL56 Cold-shock protein CspD n=34 Tax=Bacteria RepID=... 99 3e-20 UniRef50_P0A974 Cold shock-like protein cspE n=233 Tax=Gammaprot... 99 4e-20 UniRef50_D1IX09 Whole genome shotgun sequence of line PN40024, s... 99 5e-20 UniRef50_O30875 Major cold shock protein n=98 Tax=cellular organ... 99 6e-20 UniRef50_Q1DBV4 Cold-shock protein CspA n=10 Tax=cellular organi... 97 1e-19 UniRef50_A2SIM9 Cold-shock DNA-binding protein family n=16 Tax=P... 97 2e-19 UniRef50_A8QHS7 'Cold-shock' DNA-binding domain containing prote... 96 4e-19 UniRef50_A4VLV8 Cold-shock protein CspD n=5 Tax=Gammaproteobacte... 95 5e-19 UniRef50_Q90650 Rous sarcoma virus transcription enhancer factor... 95 5e-19 UniRef50_A4VNB0 Cold-shock DNA-binding protein n=75 Tax=Bacteria... 95 6e-19 UniRef50_C7Q9X4 Cold-shock DNA-binding domain protein n=31 Tax=B... 95 6e-19 UniRef50_UPI000194E5B1 PREDICTED: Rous sarcoma virus transcripti... 95 6e-19 UniRef50_C9Y043 Cold shock-like protein cspD n=3 Tax=Enterobacte... 95 7e-19 UniRef50_A4VMZ2 Cold shock protein CspA n=2 Tax=Gammaproteobacte... 94 1e-18 UniRef50_P0A9Y8 Cold shock-like protein cspC n=125 Tax=Enterobac... 94 1e-18 UniRef50_A3Y9L0 Cold-shock DNA-binding domain protein n=2 Tax=Ma... 94 1e-18 UniRef50_P16989 DNA-binding protein A n=144 Tax=cellular organis... 94 1e-18 UniRef50_B4S1R6 Stress response protein CspD n=5 Tax=cellular or... 94 1e-18 UniRef50_D1C6U7 Cold-shock DNA-binding domain protein n=1 Tax=Sp... 94 2e-18 UniRef50_Q03A67 Cold-shock DNA-binding protein family n=16 Tax=F... 94 2e-18 UniRef50_C4WXL4 ACYPI009849 protein n=3 Tax=cellular organisms R... 93 2e-18 UniRef50_P0A356 Cold shock-like protein cspLA n=163 Tax=root Rep... 93 2e-18 UniRef50_B0KQL2 Cold-shock DNA-binding domain protein n=2 Tax=Ga... 93 3e-18 UniRef50_B7PM92 PIN domain-containing RNA-binding protein, putat... 93 3e-18 UniRef50_A1JMC2 Cold shock-like protein cspD (Cold shock-like pr... 93 3e-18 UniRef50_Q816H3 Cold shock-like protein cspD n=370 Tax=Bacteria ... 93 3e-18 UniRef50_B7C7U1 Putative uncharacterized protein n=1 Tax=Eubacte... 92 5e-18 UniRef50_A5BWB0 Putative uncharacterized protein n=1 Tax=Vitis v... 92 5e-18 UniRef50_P62171 Cold shock-like protein cspC n=85 Tax=Bacteria R... 92 5e-18 UniRef50_Q2LY24 Cold shock protein n=11 Tax=Bacteria RepID=Q2LY2... 92 5e-18 UniRef50_UPI000155BE86 PREDICTED: hypothetical protein, partial ... 92 6e-18 UniRef50_B3RZU4 Putative uncharacterized protein n=1 Tax=Trichop... 92 7e-18 UniRef50_B5AU39 Y-box protein Lyb1 n=1 Tax=Lethenteron japonicum... 91 8e-18 UniRef50_Q5HPE0 Cold shock protein cspA n=113 Tax=Bacteria RepID... 91 9e-18 UniRef50_Q1LCU6 Cold-shock DNA-binding protein family n=7 Tax=Pr... 91 1e-17 UniRef50_P95459 Major cold shock protein cspA n=33 Tax=cellular ... 91 1e-17 UniRef50_B5X2B2 Y-box-binding protein 2-A n=1 Tax=Salmo salar Re... 91 1e-17 UniRef50_Q9Y2T7 Y-box-binding protein 2 n=21 Tax=Tetrapoda RepID... 91 1e-17 UniRef50_Q4FT63 Cold-shock DNA-binding protein family n=10 Tax=c... 91 1e-17 UniRef50_Q2P2A6 Major cold shock protein n=21 Tax=Gammaproteobac... 91 1e-17 UniRef50_O67327 Cold shock-like protein n=2 Tax=Bacteria RepID=C... 90 1e-17 UniRef50_A1U3R2 Cold-shock DNA-binding protein family n=3 Tax=Ma... 90 1e-17 UniRef50_O46173 Y-box protein n=14 Tax=cellular organisms RepID=... 90 1e-17 UniRef50_A3XD40 Cold shock family protein n=5 Tax=Rhodobacterace... 90 2e-17 UniRef50_P71478 Cold shock protein 1 n=20 Tax=Firmicutes RepID=C... 90 2e-17 UniRef50_C9KNJ1 Conserved domain protein n=1 Tax=Mitsuokella mul... 90 2e-17 UniRef50_P54584 Cold shock protein n=9 Tax=Bacteria RepID=CSP_ARTGO 90 2e-17 UniRef50_Q4ZRK5 Cold-shock protein, DNA-binding n=10 Tax=Pseudom... 90 2e-17 UniRef50_A5VRM7 Cold-shock family protein n=37 Tax=Brucellaceae ... 90 2e-17 UniRef50_P41824 Y-box factor homolog n=1 Tax=Aplysia californica... 90 2e-17 UniRef50_Q81DK5 Cold shock-like protein cspE n=713 Tax=Bacteria ... 90 3e-17 UniRef50_A4RZ32 Predicted protein n=1 Tax=Ostreococcus lucimarin... 90 3e-17 UniRef50_Q2LQ45 Cold shock protein n=49 Tax=Bacteria RepID=Q2LQ4... 90 3e-17 UniRef50_C6VN45 Cold shock protein CspC n=8 Tax=Firmicutes RepID... 90 3e-17 UniRef50_Q01761 Cold shock-like protein 7.0 n=356 Tax=cellular o... 90 3e-17 UniRef50_P72192 Temperature acclimation protein B (Fragment) n=8... 90 3e-17 UniRef50_Q0SKK0 Cold shock protein n=1 Tax=Rhodococcus jostii RH... 89 3e-17 UniRef50_Q3AFQ5 Cold shock protein CspC n=14 Tax=Bacteria RepID=... 89 3e-17 UniRef50_A0NEN6 AGAP006108-PA n=4 Tax=Culicimorpha RepID=A0NEN6_... 89 3e-17 UniRef50_C4WSK9 ACYPI003867 protein n=1 Tax=Acyrthosiphon pisum ... 89 3e-17 UniRef50_B5HGK4 Cold shock protein n=10 Tax=Streptomyces RepID=B... 89 4e-17 UniRef50_Q90WH1 Cold-shock domain protein (Fragment) n=4 Tax=Per... 89 4e-17 UniRef50_Q9VRN5 Protein lin-28 homolog n=1 Tax=Drosophila melano... 89 4e-17 UniRef50_O13015 Y box protein 2 n=4 Tax=Clupeocephala RepID=O130... 89 4e-17 UniRef50_B4U902 Cold-shock DNA-binding domain protein n=9 Tax=Ba... 89 5e-17 UniRef50_P27484 Glycine-rich protein 2 n=5 Tax=Viridiplantae Rep... 89 6e-17 UniRef50_UPI00017B0A95 UPI00017B0A95 related cluster n=1 Tax=Tet... 89 6e-17 UniRef50_C4Z3Q0 Cold shock protein (Beta-ribbon, CspA family) n=... 89 6e-17 UniRef50_Q1J0P4 Cold-shock DNA-binding domain protein n=9 Tax=Ba... 88 7e-17 UniRef50_UPI000051480C PREDICTED: similar to ypsilon schachtel C... 88 7e-17 UniRef50_A1U1H2 Cold-shock DNA-binding protein family n=5 Tax=Ga... 88 7e-17 UniRef50_O54310 Cold shock-like protein n=7 Tax=Bacteria RepID=C... 88 7e-17 UniRef50_C4QN75 Y box binding protein, putative n=10 Tax=cellula... 88 7e-17 UniRef50_B5A4M3 Glycine-rich nucleic acid binding protein n=1 Ta... 88 7e-17 UniRef50_P0A970 Cold shock-like protein cspD n=101 Tax=Gammaprot... 88 8e-17 UniRef50_A4XHY2 Cold-shock DNA-binding protein family n=3 Tax=ce... 88 9e-17 UniRef50_A1S709 Cold-shock DNA-binding protein family n=6 Tax=ce... 88 1e-16 UniRef50_UPI0001555D69 PREDICTED: similar to LD37574p, partial n... 87 1e-16 UniRef50_C8P136 Conserved domain protein n=6 Tax=Bacteria RepID=... 87 1e-16 UniRef50_UPI00004F1407 PREDICTED: similar to CSDA protein n=1 Ta... 87 1e-16 UniRef50_C4QN73 Y box binding protein, putative n=4 Tax=Bilateri... 87 1e-16 UniRef50_C5RTX4 Cold-shock DNA-binding domain protein n=13 Tax=c... 87 1e-16 UniRef50_UPI0000F32A39 PREDICTED: Bos taurus similar to transcri... 87 1e-16 UniRef50_B4RGZ9 Cold-shock DNA-binding domain protein n=75 Tax=B... 87 2e-16 UniRef50_C0QFU1 CspA n=4 Tax=cellular organisms RepID=C0QFU1_DESAH 87 2e-16 UniRef50_A8I8L3 Cold-shock DNA-binding domain n=1 Tax=Azorhizobi... 87 2e-16 UniRef50_O65639 Glycine-rich protein n=10 Tax=cellular organisms... 87 2e-16 UniRef50_B8C1C4 Cold-shock DNA-binding domain-containing protein... 87 2e-16 UniRef50_Q30QF0 Cold-shock DNA-binding protein family n=12 Tax=P... 86 3e-16 UniRef50_Q5CVY2 Cold shock RNA binding domain of the OB fold (Fr... 86 3e-16 UniRef50_O62213 Protein F33A8.3, confirmed by transcript evidenc... 86 3e-16 UniRef50_Q3IC55 Cold shock protein n=52 Tax=Bacteria RepID=Q3IC5... 86 3e-16 UniRef50_C1F531 Cold shock protein n=1 Tax=Acidobacterium capsul... 86 3e-16 UniRef50_Q11GE9 Cold-shock DNA-binding protein family n=10 Tax=A... 86 4e-16 UniRef50_A4A3Y7 Cold-shock domain family protein n=2 Tax=unclass... 86 4e-16 UniRef50_Q9AN51 Blr1947 protein n=2 Tax=Bradyrhizobium japonicum... 86 4e-16 UniRef50_B0S1I2 Cold shock protein n=4 Tax=cellular organisms Re... 86 4e-16 UniRef50_D1BKC9 Cold shock domain protein CspD n=31 Tax=Bacteria... 86 4e-16 UniRef50_Q0BPU3 Cold shock protein n=2 Tax=Alphaproteobacteria R... 86 4e-16 UniRef50_D0LU49 Cold-shock DNA-binding domain protein n=1 Tax=Ha... 85 5e-16 UniRef50_D1H869 Whole genome shotgun sequence of line PN40024, s... 85 7e-16 UniRef50_B0UEI2 Cold-shock DNA-binding domain protein n=11 Tax=A... 85 7e-16 UniRef50_B7RWZ3 'Cold-shock' DNA-binding domain protein n=1 Tax=... 85 8e-16 UniRef50_A5VRP5 Cold-shock family protein n=37 Tax=Brucellaceae ... 85 8e-16 UniRef50_A3YG84 Cold-shock protein CspD n=2 Tax=Marinomonas RepI... 84 1e-15 UniRef50_Q1RLA8 Zinc finger protein n=1 Tax=Ciona intestinalis R... 84 1e-15 UniRef50_Q38896 Glycine-rich protein 2b n=125 Tax=cellular organ... 84 1e-15 UniRef50_D0KX28 Cold-shock DNA-binding domain protein n=1 Tax=Ha... 84 1e-15 UniRef50_B3QZU5 Cold shock-like protein n=1 Tax=Candidatus Phyto... 84 1e-15 UniRef50_C4FWF1 Putative uncharacterized protein n=1 Tax=Catonel... 84 1e-15 UniRef50_P55390 Probable cold shock protein y4cH n=110 Tax=Prote... 84 1e-15 UniRef50_A5N624 CspA n=10 Tax=cellular organisms RepID=A5N624_CLOK5 84 1e-15 UniRef50_B6QZ94 Cold-shock DNA-binding domain protein n=1 Tax=Ps... 84 1e-15 UniRef50_Q47TE2 Cold-shock DNA-binding protein family n=9 Tax=Ac... 84 2e-15 UniRef50_B4SCC3 Cold-shock DNA-binding domain protein n=4 Tax=ce... 84 2e-15 UniRef50_A8ILK3 Cold shock protein n=9 Tax=Proteobacteria RepID=... 84 2e-15 UniRef50_D0MCR5 Cold-shock DNA-binding domain protein n=1 Tax=Rh... 83 2e-15 UniRef50_D0MDE8 Cold-shock DNA-binding domain protein n=1 Tax=Rh... 83 3e-15 UniRef50_A9W6T1 Cold-shock protein DNA-binding n=32 Tax=Bacteria... 83 3e-15 UniRef50_D2QP83 Cold-shock DNA-binding domain protein n=5 Tax=Ba... 83 3e-15 UniRef50_A7HXE8 Putative cold-shock DNA-binding domain protein n... 82 5e-15 UniRef50_B9JZ17 Cold shock protein n=106 Tax=Alphaproteobacteria... 82 5e-15 UniRef50_B9F7B8 Putative uncharacterized protein n=1 Tax=Oryza s... 82 5e-15 UniRef50_C8WCQ1 Cold-shock DNA-binding domain protein n=18 Tax=A... 82 6e-15 UniRef50_B3EP04 Cold-shock DNA-binding domain protein n=13 Tax=C... 82 6e-15 UniRef50_Q9Z3S6 Cold shock protein cspA n=72 Tax=Bacteria RepID=... 82 6e-15 UniRef50_Q1NG42 Cold shock protein n=3 Tax=Alphaproteobacteria R... 82 8e-15 UniRef50_Q2S3Y3 'Cold-shock' DNA-binding domain, putative n=1 Ta... 81 8e-15 UniRef50_Q4H2L8 Y-box protein 1/2/3 n=2 Tax=Ciona intestinalis R... 81 1e-14 UniRef50_B0T8T3 Cold-shock DNA-binding domain protein n=40 Tax=B... 81 1e-14 UniRef50_Q1YTJ3 Cold shock protein n=1 Tax=gamma proteobacterium... 81 1e-14 UniRef50_D1AYL8 Cold-shock DNA-binding domain protein n=3 Tax=ce... 81 1e-14 UniRef50_B1MZK9 Cold shock protein n=15 Tax=Bacteria RepID=B1MZK... 81 1e-14 UniRef50_P92186 Protein lin-28 n=5 Tax=Caenorhabditis RepID=LIN2... 80 1e-14 UniRef50_B1Z823 Cold-shock DNA-binding domain protein n=34 Tax=A... 80 1e-14 UniRef50_Q23960 Y-box protein n=1 Tax=Dugesia japonica RepID=Q23... 80 1e-14 UniRef50_A4FKV9 Putative DNA-binding protein n=1 Tax=Saccharopol... 80 2e-14 UniRef50_Q2S0T4 Conserved domain protein n=2 Tax=Bacteria RepID=... 80 2e-14 UniRef50_P46449 Cold shock-like protein cspD n=53 Tax=Bacteria R... 80 2e-14 UniRef50_B6IXJ6 Cold shock-like protein CspA n=1 Tax=Rhodospiril... 80 2e-14 UniRef50_P91306 Y-box protein 2 n=6 Tax=Caenorhabditis RepID=P91... 79 3e-14 UniRef50_UPI0000589074 PREDICTED: similar to ENSANGP00000011455 ... 79 3e-14 UniRef50_D1A5P8 Cold-shock DNA-binding domain protein n=33 Tax=A... 79 3e-14 UniRef50_A0ACJ4 Putative DNA-binding protein n=2 Tax=Streptomyce... 79 4e-14 UniRef50_B9KKC8 Cold-shock DNA-binding protein family n=21 Tax=R... 79 4e-14 UniRef50_B8KR01 'Cold-shock' DNA-binding domain protein n=1 Tax=... 79 4e-14 UniRef50_Q5JKD6 Cold shock domain protein 2-like protein n=1 Tax... 79 4e-14 UniRef50_A8PLB9 'Cold-shock' DNA-binding domain containing prote... 79 5e-14 UniRef50_Q4SGH3 Chromosome undetermined SCAF14594, whole genome ... 79 5e-14 UniRef50_D1S746 Cold-shock DNA-binding domain protein n=1 Tax=Mi... 79 5e-14 UniRef50_A3YF52 Cold-shock protein, DNA-binding n=2 Tax=Marinomo... 79 6e-14 UniRef50_A4TN10 Cold-shock DNA-binding protein family n=35 Tax=E... 78 7e-14 UniRef50_Q0VN88 Cold-shock domain family protein n=2 Tax=Alcaniv... 78 1e-13 UniRef50_Q5YVF2 Putative cold shock protein n=1 Tax=Nocardia far... 77 1e-13 UniRef50_A5V9E9 Cold-shock DNA-binding protein family n=2 Tax=ce... 77 1e-13 UniRef50_C1E859 Cold-shock protein with RNA binding domain n=2 T... 77 2e-13 UniRef50_D1U4V2 Cold-shock DNA-binding domain protein n=1 Tax=De... 77 2e-13 UniRef50_Q1RHK6 Cold shock-like protein cspA n=15 Tax=Rickettsia... 77 2e-13 UniRef50_Q4UBG6 Cold shock protein, putative n=2 Tax=Theileria R... 77 2e-13 UniRef50_B3DPK3 Cold shock protein n=7 Tax=Bifidobacterium RepID... 77 2e-13 UniRef50_A3VSH0 Cold shock protein n=1 Tax=Parvularcula bermuden... 77 2e-13 UniRef50_Q6ZN17 Protein lin-28 homolog B n=13 Tax=Tetrapoda RepI... 76 3e-13 UniRef50_UPI0001B4CA82 DNA-binding protein n=1 Tax=Streptomyces ... 76 3e-13 UniRef50_Q475L4 Cold-shock DNA-binding protein family n=1 Tax=Ra... 76 3e-13 UniRef50_Q1GT29 Cold-shock DNA-binding protein family n=1 Tax=Sp... 76 3e-13 UniRef50_C4RFH3 DNA binding protein n=1 Tax=Micromonospora sp. A... 76 3e-13 UniRef50_B6KPP5 Glycine-rich protein 2, putative n=3 Tax=Toxopla... 76 4e-13 UniRef50_A4V6J7 Y-Box factor protein (Fragment) n=1 Tax=Dugesia ... 76 4e-13 UniRef50_C2E292 Cold-shock protein n=9 Tax=Lactobacillus RepID=C... 76 4e-13 UniRef50_Q2W0B3 Cold shock protein n=3 Tax=Magnetospirillum RepI... 76 4e-13 UniRef50_C9NB66 Cold-shock DNA-binding domain protein n=1 Tax=St... 76 4e-13 UniRef50_B9T6D3 Cellular nucleic acid binding protein, putative ... 75 5e-13 UniRef50_A7BYF1 Putative uncharacterized protein n=1 Tax=Beggiat... 75 5e-13 UniRef50_D1XSW6 Cold-shock DNA-binding domain protein n=3 Tax=St... 75 5e-13 UniRef50_B4SFC0 Cold-shock DNA-binding domain protein n=1 Tax=Pe... 75 6e-13 UniRef50_Q2RZT3 Conserved domain protein n=2 Tax=Salinibacter ru... 75 6e-13 UniRef50_A0Z255 Cold shock protein, CspA family-like protein n=1... 75 7e-13 UniRef50_Q1AWL7 Cold-shock DNA-binding protein family n=2 Tax=ce... 75 7e-13 UniRef50_C4K358 RNA chaperone, transcription antiterminator n=3 ... 75 9e-13 UniRef50_D2H5S2 Putative uncharacterized protein (Fragment) n=2 ... 74 1e-12 UniRef50_B9MXF4 Predicted protein n=2 Tax=Populus trichocarpa Re... 74 1e-12 UniRef50_C8SGB1 Cold-shock DNA-binding domain protein n=4 Tax=Me... 74 1e-12 UniRef50_Q9EZJ7 Cold shock-like protein CspE (Fragment) n=1 Tax=... 74 1e-12 UniRef50_D0LBW3 Cold-shock protein DNA-binding protein n=2 Tax=C... 74 2e-12 UniRef50_Q1QLF4 Cold-shock DNA-binding protein family n=1 Tax=Ni... 74 2e-12 UniRef50_Q803L0 Protein lin-28 homolog A n=13 Tax=Euteleostomi R... 74 2e-12 UniRef50_Q127M7 Cold-shock DNA-binding protein family n=2 Tax=Be... 74 2e-12 UniRef50_A8NIV0 'Cold-shock' DNA-binding domain containing prote... 74 2e-12 UniRef50_A9AXX4 Cold-shock DNA-binding domain protein n=1 Tax=He... 73 2e-12 UniRef50_A0M1Q5 Cold shock-like protein n=13 Tax=Bacteria RepID=... 73 2e-12 UniRef50_Q2NK56 Cold shock protein n=6 Tax=Bacteria RepID=Q2NK56... 73 3e-12 UniRef50_Q016S2 Putative nucleic acid binding protein (ISS) n=1 ... 73 3e-12 UniRef50_A2SHE7 Cold-shock DNA-binding domain n=2 Tax=Betaproteo... 73 3e-12 UniRef50_A0PKZ5 Cold shock-like protein B CspB n=78 Tax=Actinomy... 73 4e-12 UniRef50_A6ESQ3 Cold shock protein n=2 Tax=Bacteroidetes RepID=A... 72 5e-12 UniRef50_Q9H9Z2 Protein lin-28 homolog A n=33 Tax=Euteleostomi R... 72 5e-12 UniRef50_A8M1B3 Cold-shock DNA-binding domain protein n=2 Tax=Sa... 72 5e-12 UniRef50_Q6ALH9 Hypothetical cold-shock protein n=1 Tax=Desulfot... 72 5e-12 UniRef50_A0R441 'Cold-shock' DNA-binding domain protein n=18 Tax... 72 5e-12 UniRef50_A1B0C7 Cold-shock DNA-binding protein family n=28 Tax=R... 72 5e-12 UniRef50_A9ART0 Cold-shock DNA-binding domain protein n=1 Tax=Bu... 72 5e-12 UniRef50_A5VJ42 Cold-shock DNA-binding protein family n=10 Tax=L... 72 6e-12 UniRef50_B9T6B7 Cold shock protein, putative n=1 Tax=Ricinus com... 72 6e-12 UniRef50_B2IBA0 Cold-shock DNA-binding domain protein n=2 Tax=Rh... 72 7e-12 UniRef50_Q607Y7 Cold-shock DNA-binding domain protein n=1 Tax=Me... 72 7e-12 UniRef50_C0CRT9 Putative uncharacterized protein n=1 Tax=Blautia... 72 7e-12 UniRef50_B7RPT8 Cold shock protein n=1 Tax=Roseobacter sp. GAI10... 72 8e-12 UniRef50_Q12K82 Putative uncharacterized protein n=1 Tax=Shewane... 72 8e-12 UniRef50_A4VQF2 Cold-shock DNA-binding domain protein n=12 Tax=B... 71 9e-12 UniRef50_C7LWH7 Cold-shock DNA-binding domain protein n=2 Tax=Pr... 71 9e-12 UniRef50_B0VIQ0 Cold-shock domain family protein n=2 Tax=Bacteri... 71 1e-11 UniRef50_Q5YWN3 Putative cold shock protein n=1 Tax=Nocardia far... 71 1e-11 UniRef50_D2YVD1 Cold shock domain-containing protein n=2 Tax=Vib... 71 1e-11 UniRef50_Q042Q8 Cold-shock DNA-binding protein family n=18 Tax=L... 70 1e-11 UniRef50_Q0APJ7 Cold-shock DNA-binding protein family n=1 Tax=Ma... 70 2e-11 UniRef50_C5RAK7 Cold shock protein CspA n=1 Tax=Weissella parame... 70 2e-11 UniRef50_C0Z2E8 AT4G38680 protein n=103 Tax=cellular organisms R... 70 2e-11 UniRef50_B3QHW3 Cold-shock DNA-binding domain protein n=92 Tax=A... 70 2e-11 UniRef50_A1VD07 Cold-shock DNA-binding protein family n=4 Tax=De... 70 2e-11 UniRef50_Q5P4M3 Probable cold shock family protein n=1 Tax=Aroma... 70 2e-11 UniRef50_Q6PHF1 Calcium regulated heat stable protein 1 n=2 Tax=... 70 3e-11 UniRef50_D2QU65 Cold-shock DNA-binding domain protein n=23 Tax=B... 70 3e-11 UniRef50_C0WQD2 Possible cold-shock protein n=3 Tax=Lactobacillu... 69 3e-11 UniRef50_Q2RNN9 Cold-shock DNA-binding protein family n=2 Tax=Rh... 69 3e-11 UniRef50_C6J0U1 Predicted protein n=1 Tax=Paenibacillus sp. oral... 69 4e-11 UniRef50_A3X5Q6 Putative uncharacterized protein n=1 Tax=Roseoba... 69 4e-11 UniRef50_A0PKE1 DNA-binding protein n=2 Tax=Mycobacterium RepID=... 69 4e-11 UniRef50_A1TSW1 Cold-shock DNA-binding domain protein n=4 Tax=Ac... 69 4e-11 UniRef50_A9KN41 Cold-shock DNA-binding domain protein n=22 Tax=F... 69 4e-11 UniRef50_Q17JD9 Putative uncharacterized protein n=1 Tax=Aedes a... 69 4e-11 UniRef50_C6XG83 Cold shock protein n=1 Tax=Candidatus Liberibact... 69 5e-11 UniRef50_A6C742 Cold-shock DNA-binding domain n=1 Tax=Planctomyc... 69 5e-11 UniRef50_Q9Y534 Cold shock domain-containing protein C2 n=38 Tax... 69 5e-11 UniRef50_UPI0001AF6C46 cold-shock DNA-binding protein family pro... 69 5e-11 UniRef50_Q28PH1 Cold-shock DNA-binding protein family n=11 Tax=R... 69 5e-11 UniRef50_A6W4V4 Putative cold-shock DNA-binding domain protein n... 69 5e-11 UniRef50_Q1ZUW9 Predicted membrane protein n=2 Tax=Photobacteriu... 69 5e-11 UniRef50_B0W4X1 Putative uncharacterized protein n=1 Tax=Culex q... 69 5e-11 Sequences not found previously or not previously below threshold: >UniRef50_Q4KEW6 Cold shock protein capa n=14 Tax=Bacteria RepID=Q4KEW6_PSEF5 Length = 91 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 32/68 (47%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 MS + TG VK F+ + G GFI P G ++ VH A + L G V F G + Sbjct: 22 MSNRQTGTVKWFNDEKGFGFITPQGGGDDLFVHFKAIESDGFKSLKEGQTVSFVAEKGQK 81 Query: 61 GPTAANVY 68 G AA V Sbjct: 82 GMQAAQVR 89 >UniRef50_Q7NT55 Cold shock transcription regulator protein n=1 Tax=Chromobacterium violaceum RepID=Q7NT55_CHRVO Length = 110 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 31/66 (46%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 + TG VK F+ G GFI P +G +V H S + L RV F V G +G Sbjct: 43 KMATGTVKWFNDSKGFGFITPDEGGDDVFAHFSQINAKGFRSLAENQRVSFDIVEGPKGK 102 Query: 63 TAANVY 68 A+N+ Sbjct: 103 QASNIQ 108 >UniRef50_Q88P68 Cold-shock domain family protein n=52 Tax=Bacteria RepID=Q88P68_PSEPK Length = 165 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M+ + G VK F+ + G GFI P G ++ VH A + L G +V F V G + Sbjct: 97 MAERQKGTVKWFNDEKGYGFITPESG-PDLFVHFRAIEGNGFKSLKEGQQVTFEAVQGQK 155 Query: 61 GPTAANVY 68 G A V Sbjct: 156 GMQADKVQ 163 >UniRef50_P36995 Cold shock-like protein cspB n=24 Tax=Bacteria RepID=CSPB_ECOLI Length = 71 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 33/70 (47%), Positives = 42/70 (60%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 MS KMTG+VK F+ G GFI P DG K+V VH SA + L G +V F +G + Sbjct: 1 MSNKMTGLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDNYRTLFEGQKVTFSIESGAK 60 Query: 61 GPTAANVYLS 70 GP AANV ++ Sbjct: 61 GPAAANVIIT 70 >UniRef50_P58726 Cold shock-like protein cspJ n=322 Tax=cellular organisms RepID=CSPJ_SALTI Length = 70 Score = 103 bits (257), Expect = 3e-21, Method: Composition-based stats. Identities = 30/67 (44%), Positives = 39/67 (58%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M+ K+TG+VK F+ + G GFI P DG K+V VH SA + L VEF G + Sbjct: 1 MTTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTLNENQEVEFSAEQGPK 60 Query: 61 GPTAANV 67 GP+A NV Sbjct: 61 GPSAVNV 67 >UniRef50_A9IR63 Cold shock-like protein n=13 Tax=cellular organisms RepID=A9IR63_BORPD Length = 68 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 36/67 (53%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 TGIVK F+ + G GFI P DG K++ H S + + L RV F G +GP+ Sbjct: 1 MATGIVKWFNAEKGYGFITPDDGSKDLFAHYSEISSEGYKSLQENQRVTFEVGQGPKGPS 60 Query: 64 AANVYLS 70 A N+ +S Sbjct: 61 AKNIKVS 67 >UniRef50_Q08VT0 Conserved domain protein n=3 Tax=Bacteria RepID=Q08VT0_STIAU Length = 100 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 30/68 (44%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 TG VK F+ G GFI G ++V H +A L G +V+F G +G Sbjct: 33 NMATGTVKWFNDAKGFGFITQDGGGEDVFCHHTAINMDGFRTLQEGQKVQFDVARGPKGL 92 Query: 63 TAANVYLS 70 A NV + Sbjct: 93 QAQNVRAA 100 >UniRef50_A4G7K9 Cold shock protein CspD n=3 Tax=Bacteria RepID=A4G7K9_HERAR Length = 67 Score = 101 bits (253), Expect = 7e-21, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 32/65 (49%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 TG VK F+ G GFI P G +++ H SA T + L G +V F G +G Sbjct: 1 MQTGTVKWFNDSKGFGFITPDSGGEDLFAHFSAITMEGFKTLKEGQKVSFEVTQGPKGKQ 60 Query: 64 AANVY 68 A+N+ Sbjct: 61 ASNIK 65 >UniRef50_B5Y9M2 Conserved domain protein n=20 Tax=Bacteria RepID=B5Y9M2_COPPD Length = 89 Score = 101 bits (253), Expect = 7e-21, Method: Composition-based stats. Identities = 31/66 (46%), Positives = 37/66 (56%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 ++ TG VK FD K G GFI DG +V VH SA + L G +VEF VNG +G Sbjct: 21 TKMYTGTVKWFDAKKGYGFITRDDGEGDVFVHFSAIEGNGFKSLDQGDKVEFEIVNGPKG 80 Query: 62 PTAANV 67 P AA V Sbjct: 81 PQAAKV 86 >UniRef50_Q0JY13 Cold shock protein, DNA-binding n=2 Tax=Burkholderiaceae RepID=Q0JY13_RALEH Length = 98 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 31/64 (48%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 TGIVK F+ G GFI P G ++ H S + L RV+F NG +G Sbjct: 18 MQTGIVKWFNDAKGFGFIKPDAGGDDLFAHFSEIRADGFKSLQENQRVQFEVKNGPKGLQ 77 Query: 64 AANV 67 AAN+ Sbjct: 78 AANI 81 >UniRef50_P0A363 Cold shock-like protein cspB n=58 Tax=Enterobacteriaceae RepID=CSPB_YEREN Length = 70 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 35/67 (52%), Positives = 41/67 (61%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 MS KMTG+VK FD G GFI P+DG K+V VH SA D + L G VEF G + Sbjct: 1 MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGNDYKTLDEGQNVEFSIEQGQK 60 Query: 61 GPTAANV 67 GP+A NV Sbjct: 61 GPSAVNV 67 >UniRef50_A3BPB0 Putative uncharacterized protein n=4 Tax=Oryza sativa RepID=A3BPB0_ORYSJ Length = 238 Score = 99.7 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 S ++ G VK FD G GFI P DG +++ VH S+ L G VEF +G G Sbjct: 3 SERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSDGYRSLNDGDVVEFSVGSGNDG 62 Query: 62 P-TAANV 67 A NV Sbjct: 63 RTKAVNV 69 >UniRef50_B3PL56 Cold-shock protein CspD n=34 Tax=Bacteria RepID=B3PL56_CELJU Length = 125 Score = 99.3 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 32/64 (50%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 TG VK F+ G GFI+ +G +++ H SA + + L G +V F G +G Sbjct: 42 MPTGTVKWFNNAKGYGFILADEGGEDLFAHYSAISMDGYKTLKAGQQVSFEITRGDKGLH 101 Query: 64 AANV 67 A N+ Sbjct: 102 AINI 105 >UniRef50_P0A974 Cold shock-like protein cspE n=233 Tax=Gammaproteobacteria RepID=CSPE_ECO57 Length = 69 Score = 98.9 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 32/65 (49%), Positives = 38/65 (58%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 K+ G VK F+ G GFI P DG K+V VH SA + L G RVEF NG +GP+ Sbjct: 3 KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNGAKGPS 62 Query: 64 AANVY 68 AANV Sbjct: 63 AANVI 67 >UniRef50_D1IX09 Whole genome shotgun sequence of line PN40024, scaffold_38.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1IX09_VITVI Length = 236 Score = 98.9 bits (246), Expect = 5e-20, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP- 62 ++TG VK F+ + G GFI P DG ++ VH S+ L G VEF + G Sbjct: 3 RVTGTVKWFNDQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLGEGEAVEFVVESSDDGRT 62 Query: 63 TAANV 67 A +V Sbjct: 63 KAVDV 67 >UniRef50_O30875 Major cold shock protein n=98 Tax=cellular organisms RepID=CSPA_MICLC Length = 67 Score = 98.6 bits (245), Expect = 6e-20, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 32/64 (50%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 G VK F+ + G GFI P D +V VH SA + L RVEF +G +G Sbjct: 1 MAVGTVKWFNAEKGYGFIAPEDNSADVFVHFSAIQGNGFKELQENDRVEFETQDGPKGLQ 60 Query: 64 AANV 67 AANV Sbjct: 61 AANV 64 >UniRef50_Q1DBV4 Cold-shock protein CspA n=10 Tax=cellular organisms RepID=Q1DBV4_MYXXD Length = 68 Score = 97.4 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 30/66 (45%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 TG VK F+ G GFI DG +V H +A L G +VEF G +G Sbjct: 1 MATGTVKWFNDAKGFGFIAQDDGGADVFCHHTAIQTDGFRTLAEGQKVEFETRKGPKGLQ 60 Query: 64 AANVYL 69 A NV + Sbjct: 61 AENVRV 66 >UniRef50_A2SIM9 Cold-shock DNA-binding protein family n=16 Tax=Proteobacteria RepID=A2SIM9_METPP Length = 89 Score = 97.0 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 31/64 (48%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 + G VK F+ G GFI P G ++V H SA L G RV F V+G +G Sbjct: 1 MVNGTVKWFNDAKGFGFIEPEGGGEDVFAHFSAILMDGFRTLKQGARVSFELVDGPKGKL 60 Query: 64 AANV 67 A N+ Sbjct: 61 AQNI 64 >UniRef50_A8QHS7 'Cold-shock' DNA-binding domain containing protein n=4 Tax=cellular organisms RepID=A8QHS7_BRUMA Length = 290 Score = 95.9 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++R + G VK F+ K+G GFI +D ++ VH +A T + L G +VEF V Sbjct: 54 VARHIQGTVKWFNVKNGYGFINRADTGDDIFVHQTAVTKNNPNKYLRSLGDGEKVEFDVV 113 Query: 57 NGLRGPTAANV 67 G +GP AANV Sbjct: 114 EGQKGPEAANV 124 >UniRef50_A4VLV8 Cold-shock protein CspD n=5 Tax=Gammaproteobacteria RepID=A4VLV8_PSEU5 Length = 93 Score = 95.5 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 30/65 (46%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 ++G VK F+ G GFI+ G +++ H SA L G V F + G +G Sbjct: 7 MLSGKVKWFNNAKGYGFIVADGGDEDLFAHYSAIQMEGYRTLKAGQAVMFNILQGPKGLH 66 Query: 64 AANVY 68 A ++ Sbjct: 67 ATDIR 71 >UniRef50_Q90650 Rous sarcoma virus transcription enhancer factor II n=2 Tax=Tetrapoda RepID=Q90650_CHICK Length = 298 Score = 95.5 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAE----VLIPGLRVEFCRV 56 ++ K+ G VK F+ ++G GFI +D +++V VH +A + + G VEF V Sbjct: 84 LATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLASVGDGETVEFDVV 143 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 144 EGEKGAEAANV 154 >UniRef50_A4VNB0 Cold-shock DNA-binding protein n=75 Tax=Bacteria RepID=A4VNB0_PSEU5 Length = 243 Score = 95.1 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 + + G VK F+ G GFI G +V VH A +L+ G RVEF + +G Sbjct: 172 AGREAGTVKWFNTSKGFGFISRDSG-DDVFVHFRAIRGEGHRILVEGQRVEFTIMMRDKG 230 Query: 62 PTAANV 67 A +V Sbjct: 231 LQAEDV 236 >UniRef50_C7Q9X4 Cold-shock DNA-binding domain protein n=31 Tax=Bacteria RepID=C7Q9X4_CATAD Length = 68 Score = 95.1 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 27/64 (42%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 G VK F+ + G GFI G +V H S L G RV F G +GP Sbjct: 1 MTDGTVKWFNAEKGFGFIEQDGGGADVFAHFSNIAADGYRELQEGQRVSFEVTQGQKGPQ 60 Query: 64 AANV 67 A N+ Sbjct: 61 AVNI 64 >UniRef50_UPI000194E5B1 PREDICTED: Rous sarcoma virus transcription enhancer factor II n=1 Tax=Taeniopygia guttata RepID=UPI000194E5B1 Length = 420 Score = 95.1 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRVNG 58 K+ G VK F+ ++G GFI +D +++V VH +A + + G VEF V G Sbjct: 209 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEG 268 Query: 59 LRGPTAANV 67 +G AANV Sbjct: 269 EKGAEAANV 277 >UniRef50_C9Y043 Cold shock-like protein cspD n=3 Tax=Enterobacteriaceae RepID=C9Y043_CROTZ Length = 99 Score = 94.7 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 26/62 (41%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 TG VK F+ G GFI P G +++ H S L G V F G +G Sbjct: 24 METGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQVVRFDVHQGPKGNH 83 Query: 64 AA 65 A+ Sbjct: 84 AS 85 >UniRef50_A4VMZ2 Cold shock protein CspA n=2 Tax=Gammaproteobacteria RepID=A4VMZ2_PSEU5 Length = 136 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M+ + TG VK F+ G GFI +V VH A L G +VEF + G + Sbjct: 68 MAERETGTVKWFNDAKGYGFIQR-GNGADVFVHYRAIRGDGHRSLAEGQQVEFSVIQGQK 126 Query: 61 GPTAANV 67 G A +V Sbjct: 127 GLQAEDV 133 >UniRef50_P0A9Y8 Cold shock-like protein cspC n=125 Tax=Enterobacteriaceae RepID=CSPC_ECO57 Length = 69 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 36/64 (56%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 K+ G VK F+ G GFI P+DG K+V VH SA + L G VEF +G +GP Sbjct: 3 KIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNVEFEIQDGQKGPA 62 Query: 64 AANV 67 A NV Sbjct: 63 AVNV 66 >UniRef50_A3Y9L0 Cold-shock DNA-binding domain protein n=2 Tax=Marinomonas RepID=A3Y9L0_9GAMM Length = 97 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 ++GIVK F+ + G GFI G +V VH A L G +V F G +GP A Sbjct: 33 VSGIVKWFNDEKGFGFIERE-GGPDVFVHFRAINGTGRRTLQEGQKVTFEVTQGQKGPQA 91 Query: 65 ANVYL 69 NV + Sbjct: 92 ENVSI 96 >UniRef50_P16989 DNA-binding protein A n=144 Tax=cellular organisms RepID=DBPA_HUMAN Length = 372 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ K+ G VK F+ ++G GFI +D +++V VH +A + + G VEF V Sbjct: 87 LATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 146 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 147 EGEKGAEAANV 157 >UniRef50_B4S1R6 Stress response protein CspD n=5 Tax=cellular organisms RepID=B4S1R6_ALTMD Length = 72 Score = 94.3 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 28/64 (43%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 G VK F+ G GFI+P DG +++ H S L G V F G +G Sbjct: 1 MAVGKVKWFNNAKGFGFIVPEDGGEDIFAHYSTIQMEGYRSLKAGQEVTFEVQQGPKGLH 60 Query: 64 AANV 67 A N+ Sbjct: 61 AENI 64 >UniRef50_D1C6U7 Cold-shock DNA-binding domain protein n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6U7_SPHTD Length = 77 Score = 93.9 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 3/67 (4%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 TG VK +D + G GFI DG ++ VH SA + + L G RVEF + +GP Sbjct: 1 MTTGTVKWYDPEKGYGFIARDDGDSDLFVHRSAISGSE---LNEGDRVEFDVTSSPKGPR 57 Query: 64 AANVYLS 70 A +V ++ Sbjct: 58 AEHVRVT 64 >UniRef50_Q03A67 Cold-shock DNA-binding protein family n=16 Tax=Firmicutes RepID=Q03A67_LACC3 Length = 66 Score = 93.5 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 G VK F+ + G GFI DG +V VH SA + L G V F + RGP Sbjct: 1 MEHGTVKWFNAEKGYGFITREDGS-DVFVHFSAIQGDGYKTLEEGQAVTFEVEDSDRGPQ 59 Query: 64 AANVY 68 A NV Sbjct: 60 AVNVN 64 >UniRef50_C4WXL4 ACYPI009849 protein n=3 Tax=cellular organisms RepID=C4WXL4_ACYPI Length = 250 Score = 93.2 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 26/62 (41%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 GI K F+ K G GF+ P DG K+V VH L VEF +G A Sbjct: 72 QGICKWFNSKKGFGFVTPDDGGKDVFVHQRVIKKDGFRSLRENEHVEFTCHESDKGLEAT 131 Query: 66 NV 67 V Sbjct: 132 LV 133 >UniRef50_P0A356 Cold shock-like protein cspLA n=163 Tax=root RepID=CSPA_LISIN Length = 66 Score = 93.2 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 G VK F+ + G GFI +G +V VH SA + L G V F G RGP Sbjct: 1 MEQGTVKWFNAEKGFGFIERENG-DDVFVHFSAIQGDGFKSLDEGQAVTFDVEEGQRGPQ 59 Query: 64 AANVY 68 AANV Sbjct: 60 AANVQ 64 >UniRef50_B0KQL2 Cold-shock DNA-binding domain protein n=2 Tax=Gammaproteobacteria RepID=B0KQL2_PSEPG Length = 70 Score = 92.8 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M+ + G VK F+ + G GFI P G ++ VH A + L G +V F V G + Sbjct: 1 MAERQNGTVKWFNDEKGYGFITPESG-ADLFVHFRAIEGNGFKSLKEGQKVTFVAVQGQK 59 Query: 61 GPTAANVYL 69 G A V + Sbjct: 60 GLQADQVQV 68 >UniRef50_B7PM92 PIN domain-containing RNA-binding protein, putative n=2 Tax=Ixodes scapularis RepID=B7PM92_IXOSC Length = 315 Score = 92.8 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ ++ G VK F+ K+G GFI +D R+++ VH +A T + + G VEF V Sbjct: 13 LAERVLGTVKWFNVKNGYGFINRNDTREDIFVHQTAITRNNPQKIMRSVGEGETVEFDVV 72 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 73 VGEKGREAANV 83 >UniRef50_A1JMC2 Cold shock-like protein cspD (Cold shock-like protein) n=19 Tax=Bacteria RepID=A1JMC2_YERE8 Length = 85 Score = 92.8 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 26/62 (41%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 TG VK F+ G GFI P G +++ H S L G V F G +G Sbjct: 1 METGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQMVNFDVHQGPKGNH 60 Query: 64 AA 65 A+ Sbjct: 61 AS 62 >UniRef50_Q816H3 Cold shock-like protein cspD n=370 Tax=Bacteria RepID=CSPD_BACCR Length = 66 Score = 92.8 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 TG VK F+ + G GFI G +V VH SA + L G V F V G RGP Sbjct: 1 MQTGKVKWFNSEKGFGFIEVE-GGDDVFVHFSAIQGDGFKTLEEGQEVSFEIVEGNRGPQ 59 Query: 64 AANV 67 AANV Sbjct: 60 AANV 63 >UniRef50_B7C7U1 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C7U1_9FIRM Length = 90 Score = 92.0 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 TG VK F+ + G GFI DG K+V VH S+ + L G V + V RG Sbjct: 21 MSTGKVKWFNAEKGYGFITSEDG-KDVFVHYSSINSEGFKTLEEGQTVTYDVVESDRGQQ 79 Query: 64 AANVYL 69 A NV + Sbjct: 80 ANNVTV 85 >UniRef50_A5BWB0 Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=A5BWB0_VITVI Length = 189 Score = 92.0 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 S++ TG VK F + G GFI P DG +++ VH ++ L G VEF +G G Sbjct: 4 SKRSTGTVKWFSGQKGFGFIAPDDGGEDLFVHQTSIRSDGFRTLSEGETVEFAVDHGEDG 63 Query: 62 P-TAANV 67 A V Sbjct: 64 RTKAVEV 70 >UniRef50_P62171 Cold shock-like protein cspC n=85 Tax=Bacteria RepID=CSPC_BACCR Length = 65 Score = 92.0 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 M G VK F+ + G GFI DG +V VH SA + L G +VEF V+G RGP A Sbjct: 1 MQGRVKWFNAEKGFGFIEREDG-DDVFVHFSAIQQDGYKSLEEGQQVEFDIVDGARGPQA 59 Query: 65 ANV 67 ANV Sbjct: 60 ANV 62 >UniRef50_Q2LY24 Cold shock protein n=11 Tax=Bacteria RepID=Q2LY24_SYNAS Length = 132 Score = 92.0 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 + G VK F+ G GFI +G +V VH SA + L G RV F V G +GP Sbjct: 66 KMSEGTVKWFNASKGFGFIAQDNGN-DVFVHFSAIKMEGYKALEEGARVRFDVVKGNKGP 124 Query: 63 TAANVYL 69 A NV L Sbjct: 125 AADNVEL 131 >UniRef50_UPI000155BE86 PREDICTED: hypothetical protein, partial n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155BE86 Length = 223 Score = 92.0 bits (228), Expect = 6e-18, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ K+ G VK F+ ++G GFI +D +++V VH +A + + G VEF V Sbjct: 56 VATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVV 115 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 116 EGEKGAEAANV 126 >UniRef50_B3RZU4 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RZU4_TRIAD Length = 279 Score = 91.6 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ K++G VK F+ K G GFI D ++V VH +A + + VEF + Sbjct: 25 VANKVSGKVKWFNVKRGYGFIHRDDTGEDVFVHQTAIQANNPKKYLRSVGDEEVVEFDVL 84 Query: 57 NGLRGPTAANV 67 +G +G AANV Sbjct: 85 SGPKGLEAANV 95 >UniRef50_B5AU39 Y-box protein Lyb1 n=1 Tax=Lethenteron japonicum RepID=B5AU39_LAMJA Length = 331 Score = 91.2 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ K+ G VK F+ ++G GFI +D +++V VH +A + + G VEF V Sbjct: 21 IATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGEVVEFDVV 80 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 81 EGEKGAEAANV 91 >UniRef50_Q5HPE0 Cold shock protein cspA n=113 Tax=Bacteria RepID=CSPA_STAEQ Length = 66 Score = 91.2 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 G VK F+ + G GFI G +V VH SA + L G VEF V G RGP Sbjct: 1 MKQGTVKWFNAEKGFGFIEVE-GENDVFVHFSAINQEGYKSLEEGQSVEFEVVEGDRGPQ 59 Query: 64 AANV 67 AANV Sbjct: 60 AANV 63 >UniRef50_Q1LCU6 Cold-shock DNA-binding protein family n=7 Tax=Proteobacteria RepID=Q1LCU6_RALME Length = 126 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 TG VK F+ G GFI P G ++ H S + L G +V + G +GP Sbjct: 60 METGTVKWFNDSKGFGFITPDAGGDDLFAHFSEVQGNGFKSLQEGQKVRYVAGVGQKGPA 119 Query: 64 AANV 67 A + Sbjct: 120 ATKI 123 >UniRef50_P95459 Major cold shock protein cspA n=33 Tax=cellular organisms RepID=CSPA_PSEAE Length = 69 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 MS + G VK F+ G GFI P G ++ VH + + L G +V F VNG + Sbjct: 1 MSNRQNGTVKWFNDAKGFGFITPESGN-DLFVHFRSIQGTGFKSLQEGQKVSFVVVNGQK 59 Query: 61 GPTAANVYL 69 G A V + Sbjct: 60 GLQADEVQV 68 >UniRef50_B5X2B2 Y-box-binding protein 2-A n=1 Tax=Salmo salar RepID=B5X2B2_SALSA Length = 328 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ + G VK F+ ++G GFI +D +++V VH +A + + G VEF V Sbjct: 26 IATAVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVV 85 Query: 57 NGLRGPTAANV 67 +G AANV Sbjct: 86 EAAKGSEAANV 96 >UniRef50_Q9Y2T7 Y-box-binding protein 2 n=21 Tax=Tetrapoda RepID=YBOX2_HUMAN Length = 364 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ ++ G VK F+ ++G GFI +D +++V VH +A + + G VEF V Sbjct: 90 LAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVV 149 Query: 57 NGLRGPTAANV 67 G +G A NV Sbjct: 150 EGEKGAEATNV 160 >UniRef50_Q4FT63 Cold-shock DNA-binding protein family n=10 Tax=cellular organisms RepID=Q4FT63_PSYA2 Length = 71 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 MS + GIVK F+ G GFI G +++ VH A L G +VEF V G + Sbjct: 1 MSAREQGIVKWFNDSKGFGFIQRDSG-EDIFVHFRAIQGDGYRSLKDGEKVEFSVVEGDK 59 Query: 61 GPTAANVY 68 G A V Sbjct: 60 GLQAEEVR 67 >UniRef50_Q2P2A6 Major cold shock protein n=21 Tax=Gammaproteobacteria RepID=Q2P2A6_XANOM Length = 69 Score = 90.8 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 MS +M GIVK F+ G GFI P G ++ VH A + L G +V F V G + Sbjct: 1 MSERMNGIVKWFNDAKGFGFITPESG-PDLFVHFRAIQGTGFKSLQEGQKVTFVAVQGQK 59 Query: 61 GPTAANVY 68 G A V Sbjct: 60 GMQADQVQ 67 >UniRef50_O67327 Cold shock-like protein n=2 Tax=Bacteria RepID=CSP_AQUAE Length = 70 Score = 90.5 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 30/64 (46%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 G VK F + G GFI D +V VH + + L G +VEF V +GP A Sbjct: 4 RGTVKWFSKDKGYGFITREDTNADVFVHFTDIQMEGFKTLQKGQKVEFDVVEDTKGPRAK 63 Query: 66 NVYL 69 NV + Sbjct: 64 NVRV 67 >UniRef50_A1U3R2 Cold-shock DNA-binding protein family n=3 Tax=Marinobacter RepID=A1U3R2_MARAV Length = 179 Score = 90.5 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 G VK F+ K G GFI+ G E+ VH A R VL G V F V +G A Sbjct: 114 EGTVKWFNVKKGFGFIVRDSG-DEIFVHFRAIRGRGRRVLRQGQLVRFNVVEADKGLQAD 172 Query: 66 NVYL 69 NV + Sbjct: 173 NVSI 176 >UniRef50_O46173 Y-box protein n=14 Tax=cellular organisms RepID=O46173_DROME Length = 359 Score = 90.5 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 3/70 (4%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA---EVLIPGLRVEFCRVN 57 ++ K+TG VK F+ KSG GFI +D R++V VH SA + G VEF V Sbjct: 59 IATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIANNPKKAVRSVGDGEVVEFDVVI 118 Query: 58 GLRGPTAANV 67 G +G AANV Sbjct: 119 GEKGNEAANV 128 >UniRef50_A3XD40 Cold shock family protein n=5 Tax=Rhodobacteraceae RepID=A3XD40_9RHOB Length = 120 Score = 90.5 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 + TG VK F+ G GFI P G K+V VHISA L +V F G G Sbjct: 51 TEMATGTVKWFNSTKGFGFIAPDGGTKDVFVHISAVERSGLTGLADNQKVTFDIEPGRDG 110 Query: 62 PTAANVYLS 70 AA V L+ Sbjct: 111 REAA-VNLA 118 >UniRef50_P71478 Cold shock protein 1 n=20 Tax=Firmicutes RepID=CSP1_LACPL Length = 66 Score = 90.1 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 G VK F+ G GFI DG +V VH SA + L G +V F + RGP Sbjct: 1 MKNGTVKWFNADKGYGFITGEDGN-DVFVHFSAIQTDGFKTLEEGQKVTFDEESSDRGPQ 59 Query: 64 AANV 67 AANV Sbjct: 60 AANV 63 >UniRef50_C9KNJ1 Conserved domain protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNJ1_9FIRM Length = 66 Score = 90.1 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 29/66 (43%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 M G VK F + G GFI G +V VH SA + L G VEF V G RGP A Sbjct: 1 MVGKVKWFSPEKGYGFIARE-GGDDVFVHFSAIQDEGFKTLNEGQDVEFEIVEGARGPQA 59 Query: 65 ANVYLS 70 ANV + Sbjct: 60 ANVIKT 65 >UniRef50_P54584 Cold shock protein n=9 Tax=Bacteria RepID=CSP_ARTGO Length = 67 Score = 90.1 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 30/66 (45%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 G VK F+ + G GFI P D +V VH S + L RV+F G +GP Sbjct: 1 MAQGTVKWFNAEKGFGFITPDDSDGDVFVHYSEIQTGGFKTLDENARVQFEIGQGAKGPQ 60 Query: 64 AANVYL 69 A V L Sbjct: 61 ATGVTL 66 >UniRef50_Q4ZRK5 Cold-shock protein, DNA-binding n=10 Tax=Pseudomonas RepID=Q4ZRK5_PSEU2 Length = 92 Score = 90.1 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSD-GRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 + G VK F+ G GFI +++ VH SA + L G +V F +G +G Sbjct: 1 MIEGKVKWFNNAKGFGFINAEGKSDEDLFVHFSAIEMDGYKTLKAGQKVRFEVAHGPKGL 60 Query: 63 TAANVY 68 A + Sbjct: 61 QAIKIN 66 >UniRef50_A5VRM7 Cold-shock family protein n=37 Tax=Brucellaceae RepID=A5VRM7_BRUO2 Length = 105 Score = 90.1 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 26/58 (44%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 TG VK F+ G GFI P G +V VHISA L G +V + V R Sbjct: 41 PMATGTVKWFNTTKGFGFIQPDQGGTDVFVHISAVQRAGLTTLDEGQKVSYEIVQDRR 98 >UniRef50_P41824 Y-box factor homolog n=1 Tax=Aplysia californica RepID=YBOXH_APLCA Length = 253 Score = 89.7 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ +++G VK F+ KSG GFI D +++V VH +A + + G +VEF V Sbjct: 29 IASQVSGTVKWFNVKSGYGFINRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVV 88 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 89 EGEKGNEAANV 99 >UniRef50_Q81DK5 Cold shock-like protein cspE n=713 Tax=Bacteria RepID=CSPE_BACCR Length = 67 Score = 89.7 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 +TG VK F+ + G GFI +DG +V VH SA T + L G V F G RGP A Sbjct: 3 LTGKVKWFNSEKGFGFIEVADGN-DVFVHFSAITGDGFKSLDEGQEVSFEVEEGNRGPQA 61 Query: 65 ANV 67 NV Sbjct: 62 KNV 64 >UniRef50_A4RZ32 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RZ32_OSTLU Length = 106 Score = 89.7 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 33/67 (49%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M+ + G VK F+ G GFIIP DG +E+ VH + + + G VE+ + Sbjct: 1 MATRARGKVKWFNATKGFGFIIPHDGSEEIFVHQTGISCAGFRSVWEGEEVEYDVDDTDF 60 Query: 61 GPTAANV 67 P A NV Sbjct: 61 APKAVNV 67 >UniRef50_Q2LQ45 Cold shock protein n=49 Tax=Bacteria RepID=Q2LQ45_SYNAS Length = 90 Score = 89.7 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 G VK F+ + G GFI +G +V VH SA + L G RV F G +GP Sbjct: 25 MPEGKVKWFNEQKGFGFIEKDEGG-DVFVHYSAIQSSGFKTLYEGQRVSFEVQTGQKGPA 83 Query: 64 AANVY 68 A NV Sbjct: 84 AVNVK 88 >UniRef50_C6VN45 Cold shock protein CspC n=8 Tax=Firmicutes RepID=C6VN45_LACPJ Length = 66 Score = 89.7 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 G VK F+ G GFI +G +V VH SA + L G V F RGP Sbjct: 1 MEHGTVKWFNADKGFGFITRENGS-DVFVHFSAIQEDGFKSLDEGQAVNFDVEESDRGPQ 59 Query: 64 AANV 67 A NV Sbjct: 60 AVNV 63 >UniRef50_Q01761 Cold shock-like protein 7.0 n=356 Tax=cellular organisms RepID=CSP7_STRCL Length = 66 Score = 89.7 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 TG VK F+ + G GFI G +V VH SA L V F +G GP Sbjct: 1 MATGTVKWFNAEKGFGFIAQDGGGPDVFVHYSAINATGFRSLEENQVVNFDVTHGE-GPQ 59 Query: 64 AANV 67 A NV Sbjct: 60 AENV 63 >UniRef50_P72192 Temperature acclimation protein B (Fragment) n=85 Tax=cellular organisms RepID=TAPB_PSEFR Length = 63 Score = 89.7 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 MS++ +G VK F+ + G GFI P G ++ VH A + L G +V F V G + Sbjct: 1 MSQRQSGTVKWFNDEKGFGFITPESG-PDLFVHFRAIQGNGFKSLKEGQKVTFIAVQGQK 59 Query: 61 GPTA 64 G A Sbjct: 60 GMQA 63 >UniRef50_Q0SKK0 Cold shock protein n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0SKK0_RHOSR Length = 119 Score = 89.3 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 33/65 (50%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG V+ F+ + G GF+ P+DG ++ VH+S +L G RV F G A Sbjct: 55 TGTVRWFNAEQGFGFLAPADGSDDIFVHVSEIAGDGHRILEEGQRVSFAVCRTETGDQAR 114 Query: 66 NVYLS 70 +V ++ Sbjct: 115 DVRIA 119 >UniRef50_Q3AFQ5 Cold shock protein CspC n=14 Tax=Bacteria RepID=Q3AFQ5_CARHZ Length = 65 Score = 89.3 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 31/63 (49%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 M G VK FD G GFI DG +V VH SA + L G RVEF V G RGP A Sbjct: 1 MQGKVKWFDPAKGYGFIEREDGG-DVFVHFSAIKGNGFKTLEEGQRVEFNIVEGTRGPQA 59 Query: 65 ANV 67 A+V Sbjct: 60 ADV 62 >UniRef50_A0NEN6 AGAP006108-PA n=4 Tax=Culicimorpha RepID=A0NEN6_ANOGA Length = 402 Score = 89.3 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ K+TG+VK F+ KSG GFI D +++V VH SA + + G +VEF V Sbjct: 84 IATKVTGVVKWFNVKSGYGFINRGDTQEDVFVHQSAIARNNPKKAVRSVGDGEQVEFDVV 143 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 144 IGEKGNEAANV 154 >UniRef50_C4WSK9 ACYPI003867 protein n=1 Tax=Acyrthosiphon pisum RepID=C4WSK9_ACYPI Length = 305 Score = 89.3 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 +S K+TG+VK F+ KSG GFI +D ++++ VH SA + + G VEF V Sbjct: 24 ISVKVTGVVKWFNVKSGYGFINRNDTKEDIFVHQSAIIKNNPKKIVRSVGDGETVEFDVV 83 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 84 EGEKGHEAANV 94 >UniRef50_B5HGK4 Cold shock protein n=10 Tax=Streptomyces RepID=B5HGK4_STRPR Length = 67 Score = 89.3 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 32/64 (50%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 +G+VK F+ + G GFI G +V H S + L+ G +V F G +GPT Sbjct: 1 MASGVVKWFNAEKGFGFIEQDGGGPDVFAHYSNIAAQGFRELLEGQKVNFDIAQGQKGPT 60 Query: 64 AANV 67 A N+ Sbjct: 61 AENI 64 >UniRef50_Q90WH1 Cold-shock domain protein (Fragment) n=4 Tax=Percomorpha RepID=Q90WH1_ORYLA Length = 366 Score = 88.9 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRVNGLR 60 + G VK F+ ++G GFI +D +++V VH +A + + G VEF + + Sbjct: 3 VQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVIEAAK 62 Query: 61 GPTAANV 67 G AANV Sbjct: 63 GSEAANV 69 >UniRef50_Q9VRN5 Protein lin-28 homolog n=1 Tax=Drosophila melanogaster RepID=LIN28_DROME Length = 195 Score = 88.9 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 26/61 (42%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G K F+ G GF+ P+DG +EV VH S L VEF RG A Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVIQMSGFRSLGEQEEVEFECQRTSRGLEATR 100 Query: 67 V 67 V Sbjct: 101 V 101 >UniRef50_O13015 Y box protein 2 n=4 Tax=Clupeocephala RepID=O13015_CARAU Length = 297 Score = 88.9 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ + G VK F+ ++G GFI +D +++V VH +A + + G VEF V Sbjct: 17 IATGVEGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGEVVEFDVV 76 Query: 57 NGLRGPTAANV 67 +G AANV Sbjct: 77 EAAKGSEAANV 87 >UniRef50_B4U902 Cold-shock DNA-binding domain protein n=9 Tax=Bacteria RepID=B4U902_HYDS0 Length = 71 Score = 88.9 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPR--DAEVLIPGLRVEFCRVNGLRGP 62 +TG VK F ++ G GF+ D + +V VH SA P + L+ G RVEF +GP Sbjct: 3 ITGTVKWFSKEKGYGFLTRDDNQGDVFVHFSAIDPNRQGFKTLVQGQRVEFEVDQDSKGP 62 Query: 63 TAANVYL 69 A NV + Sbjct: 63 RAKNVRV 69 >UniRef50_P27484 Glycine-rich protein 2 n=5 Tax=Viridiplantae RepID=GRP2_NICSY Length = 214 Score = 88.5 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 ++ G VK F + G GFI P DG +++ VH S L G VEF +G G Sbjct: 7 QRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDGR 66 Query: 63 -TAANV 67 A +V Sbjct: 67 TKAVDV 72 >UniRef50_UPI00017B0A95 UPI00017B0A95 related cluster n=1 Tax=Tetraodon nigroviridis RepID=UPI00017B0A95 Length = 321 Score = 88.5 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 5/72 (6%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ + G VK F+ ++G GFI +D +++V VH +A + + G VEF + Sbjct: 26 IATLVQGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGELVEFDVI 85 Query: 57 N-GLRGPTAANV 67 +G AANV Sbjct: 86 EAAKKGSEAANV 97 >UniRef50_C4Z3Q0 Cold shock protein (Beta-ribbon, CspA family) n=10 Tax=Bacteria RepID=C4Z3Q0_EUBE2 Length = 84 Score = 88.5 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 +M G VK F+ + G GFI + K+V VH S + L G +VEF G +GP Sbjct: 19 EMKGTVKWFNNQKGYGFIS-DESGKDVFVHYSGLNMEGFKSLEEGAQVEFDVTEGAKGPQ 77 Query: 64 AANV 67 A NV Sbjct: 78 ATNV 81 >UniRef50_Q1J0P4 Cold-shock DNA-binding domain protein n=9 Tax=Bacteria RepID=Q1J0P4_DEIGD Length = 87 Score = 88.2 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGL--RG 61 G VK F+ + G GFI G ++V H SA + + L G VEF G +G Sbjct: 1 MAVGKVKWFNAEKGYGFIETE-GSEDVFAHFSAIQAQGFKKLNEGDEVEFEIEPGQRGKG 59 Query: 62 PTAANVYLS 70 P A N+ ++ Sbjct: 60 PQARNIVVT 68 >UniRef50_UPI000051480C PREDICTED: similar to ypsilon schachtel CG5654-PA n=2 Tax=Apocrita RepID=UPI000051480C Length = 279 Score = 88.2 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ K+TG VK F+ KSG GFI +D +++V VH SA + + G VEF V Sbjct: 20 IANKVTGTVKWFNVKSGYGFINRNDTKEDVFVHQSAIVKNNPRKAVRSVGDGEVVEFDVV 79 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 80 IGEKGHEAANV 90 >UniRef50_A1U1H2 Cold-shock DNA-binding protein family n=5 Tax=Gammaproteobacteria RepID=A1U1H2_MARAV Length = 103 Score = 88.2 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 26/64 (40%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 G VK F+ G GFII ++ H S+ + L G V F + +G Sbjct: 1 MPRGKVKWFNNAKGYGFIIEDGCSDDLFAHFSSVQMDGYKTLKAGQTVTFDKKPSDKGVH 60 Query: 64 AANV 67 A N+ Sbjct: 61 AINI 64 >UniRef50_O54310 Cold shock-like protein n=7 Tax=Bacteria RepID=CSP_THEMA Length = 66 Score = 88.2 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 M G VK FD K G GFI +G +V VH SA + L G VEF G +GP A Sbjct: 1 MRGKVKWFDSKKGYGFITKDEGG-DVFVHWSAIEMEGFKTLKEGQVVEFEIQEGKKGPQA 59 Query: 65 ANVYL 69 A+V + Sbjct: 60 AHVKV 64 >UniRef50_C4QN75 Y box binding protein, putative n=10 Tax=cellular organisms RepID=C4QN75_SCHMA Length = 231 Score = 88.2 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 M ++ G+VK F+ K+G GFI D ++ VH SA + + L G VEF V Sbjct: 22 MEERVKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVV 81 Query: 57 NGLRGPTAANV 67 G +G A+ V Sbjct: 82 EGDKGDEASEV 92 >UniRef50_B5A4M3 Glycine-rich nucleic acid binding protein n=1 Tax=Gymnochlora stellata RepID=B5A4M3_GYMST Length = 290 Score = 88.2 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 + + +G K F+ G GFI+P +G+ ++ VH +A L G +VEF Sbjct: 20 LPDRQSGTCKWFNTVKGYGFILPQEGKDDIFVHQTAIKAVGFRSLAEGEQVEFDVEVDAT 79 Query: 61 G-PTAANV 67 G A NV Sbjct: 80 GRKKARNV 87 >UniRef50_P0A970 Cold shock-like protein cspD n=101 Tax=Gammaproteobacteria RepID=CSPD_ECO57 Length = 74 Score = 88.2 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 26/62 (41%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 G VK F+ G GFI P G +++ H S L G V+F G +G Sbjct: 1 MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNH 60 Query: 64 AA 65 A+ Sbjct: 61 AS 62 >UniRef50_A4XHY2 Cold-shock DNA-binding protein family n=3 Tax=cellular organisms RepID=A4XHY2_CALS8 Length = 66 Score = 87.8 bits (217), Expect = 9e-17, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 M G VK F+ + G GFI +G +V VH SA + L G VEF V RG A Sbjct: 1 MRGRVKWFNPEKGYGFISTENG-DDVFVHFSAINMEGYKTLAEGQMVEFDVVKSERGNQA 59 Query: 65 ANVY 68 NV Sbjct: 60 VNVR 63 >UniRef50_A1S709 Cold-shock DNA-binding protein family n=6 Tax=cellular organisms RepID=A1S709_SHEAM Length = 70 Score = 87.8 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 + + TG VK F+ + G GF+ + +V VH A + L G +V F V G +G Sbjct: 3 APQHTGTVKWFNDEKGFGFLSRDNDS-DVFVHYRAINTQGRRTLKEGQKVSFSLVEGQKG 61 Query: 62 PTAANV 67 AANV Sbjct: 62 LLAANV 67 >UniRef50_UPI0001555D69 PREDICTED: similar to LD37574p, partial n=1 Tax=Ornithorhynchus anatinus RepID=UPI0001555D69 Length = 281 Score = 87.4 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ ++ G+VK F+ + G GFI D +++V +H SA + + G V+F V Sbjct: 32 LATRIVGVVKWFNVRHGYGFICRIDMQEDVFIHQSAIVRNNPRKCQRSVGEGEVVQFDLV 91 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 92 AGAKGTEAANV 102 >UniRef50_C8P136 Conserved domain protein n=6 Tax=Bacteria RepID=C8P136_ERYRH Length = 66 Score = 87.4 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 TG VK F+ + G GFI G +++ VH SA + L G V F V G RG Sbjct: 1 MSTGKVKFFNAEKGYGFITIE-GGQDIFVHYSAIVADGYKTLEEGQEVSFEVVEGPRGEQ 59 Query: 64 AANVY 68 AANV Sbjct: 60 AANVR 64 >UniRef50_UPI00004F1407 PREDICTED: similar to CSDA protein n=1 Tax=Bos taurus RepID=UPI00004F1407 Length = 323 Score = 87.4 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAE----VLIPGLRVEFCRV 56 +S+++ G V F K G GFI D +++V VH +A T ++ + G VEF V Sbjct: 64 ISKRVLGTVVWFKEKKGYGFISRQDTQEDVFVHHTAITGKNPCTYRGSVDDGEMVEFDVV 123 Query: 57 NGLRGPTAANV 67 G G AANV Sbjct: 124 QGEWGTEAANV 134 >UniRef50_C4QN73 Y box binding protein, putative n=4 Tax=Bilateria RepID=C4QN73_SCHMA Length = 167 Score = 87.4 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 M ++ G+VK F+ K+G GFI D ++ VH SA + + L G VEF V Sbjct: 22 MEERVKGVVKWFNVKAGYGFINRQDTSTDIFVHQSAISRNNPEKLQRSLQEGEEVEFYVV 81 Query: 57 NGLRGPTAANV 67 G +G A+ V Sbjct: 82 EGDKGDEASEV 92 >UniRef50_C5RTX4 Cold-shock DNA-binding domain protein n=13 Tax=cellular organisms RepID=C5RTX4_9THEO Length = 67 Score = 87.4 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 + G VK F+ + G GFI DG +V VH SA + L G +VEF V +GP Sbjct: 1 MVRGKVKWFNAEKGYGFIEREDG-TDVFVHYSAIEGDGFKTLEEGQKVEFEVVEATKGPQ 59 Query: 64 AANVY 68 A+ V Sbjct: 60 ASKVR 64 >UniRef50_UPI0000F32A39 PREDICTED: Bos taurus similar to transcription factor EF1(A) (LOC783156), mRNA. n=2 Tax=Laurasiatheria RepID=UPI0000F32A39 Length = 313 Score = 87.0 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 5/71 (7%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ K+ G VK F+ ++G GFI +D +++V VH +A + + G EF V Sbjct: 55 IATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGET-EFDVV 113 Query: 57 NGLRGPTAANV 67 G +G AANV Sbjct: 114 EGGKGAEAANV 124 >UniRef50_B4RGZ9 Cold-shock DNA-binding domain protein n=75 Tax=Bacteria RepID=B4RGZ9_PHEZH Length = 250 Score = 87.0 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 + R +G VK F+ G GFI P DG ++V VHISA + L G +VE+ R Sbjct: 53 LRRMASGTVKWFNTAKGFGFIQPDDGGQDVFVHISAVAQAGLDALNEGDQVEYELEQDRR 112 Query: 61 --GPTAANVYLS 70 A ++ ++ Sbjct: 113 SGKLAATSIVVT 124 Score = 82.8 bits (204), Expect = 4e-15, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR--GPT 63 +G+VK F+ G GFI P G +++ VHISA L G V+F R + Sbjct: 183 SGVVKWFNPTKGFGFIKPEGGGQDIFVHISAVEQAGLSGLNEGQTVDFDLEQDRRSGKTS 242 Query: 64 AANVYLS 70 A N+ ++ Sbjct: 243 ATNLKIT 249 >UniRef50_C0QFU1 CspA n=4 Tax=cellular organisms RepID=C0QFU1_DESAH Length = 66 Score = 87.0 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 G VK F+ G GFI +G ++V VH S + L G +V F G +GP Sbjct: 1 MANGTVKWFNDSKGFGFIEQENG-EDVFVHHSGINASGFKSLNEGDKVTFDIEQGQKGPA 59 Query: 64 AANVYL 69 A NV + Sbjct: 60 ATNVTV 65 >UniRef50_A8I8L3 Cold-shock DNA-binding domain n=1 Tax=Azorhizobium caulinodans ORS 571 RepID=A8I8L3_AZOC5 Length = 117 Score = 86.6 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR-- 60 TG VK F+ + G GFI P DG + VHISA L G +V + V R Sbjct: 47 PMTTGTVKWFNPEKGFGFIAPDDGGADAFVHISAVERAGLPPLREGQKVNYDLVADKRSG 106 Query: 61 GPTAANVYL 69 +A+N+ L Sbjct: 107 KSSASNLTL 115 >UniRef50_O65639 Glycine-rich protein n=10 Tax=cellular organisms RepID=O65639_ARATH Length = 299 Score = 86.6 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 + + TG V F+ G GFI P DG E+ VH S+ L G VEF G G Sbjct: 8 AARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDG 67 Query: 62 P-TAANV 67 A NV Sbjct: 68 KTKAVNV 74 >UniRef50_B8C1C4 Cold-shock DNA-binding domain-containing protein n=1 Tax=Thalassiosira pseudonana RepID=B8C1C4_THAPS Length = 136 Score = 86.6 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 28/66 (42%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 K+ G VK FD K G GF++P DG EV VH SA L G VEF + G Sbjct: 40 DKIKGTVKWFDAKKGFGFLVPDDGSAEVFVHHSAIHANGFRSLGDGEVVEFEVMQEPNGK 99 Query: 63 -TAANV 67 A NV Sbjct: 100 WKALNV 105 >UniRef50_Q30QF0 Cold-shock DNA-binding protein family n=12 Tax=Proteobacteria RepID=Q30QF0_SULDN Length = 72 Score = 86.2 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFT--PRDAEVLIPGLRVEFCRVNG 58 M+ + G VK F+ + G GFI +G K+V VH L G +V F G Sbjct: 1 MAELLDGSVKWFNEEKGYGFIQQENGGKDVFVHFRQVNRTGPGRVSLSEGQKVTFELGEG 60 Query: 59 LRGPTAANV 67 +GP A NV Sbjct: 61 QKGPQAENV 69 >UniRef50_Q5CVY2 Cold shock RNA binding domain of the OB fold (Fragment) n=2 Tax=Cryptosporidium RepID=Q5CVY2_CRYPV Length = 135 Score = 86.2 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG-PT 63 ++G+ K FD G GFI P DG +++ VH L RVE+ +G Sbjct: 11 LSGVCKWFDSTKGFGFITPDDGSEDIFVHQQNIKVEGFRSLAQDERVEYEIETDDKGRRK 70 Query: 64 AANV 67 A NV Sbjct: 71 AVNV 74 >UniRef50_O62213 Protein F33A8.3, confirmed by transcript evidence n=2 Tax=Caenorhabditis RepID=O62213_CAEEL Length = 208 Score = 86.2 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRVN 57 + K+ G VK F+ K+G GFI +D +++ VH +A + L V F V Sbjct: 18 ATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDIVE 77 Query: 58 GLRGPTAANV 67 G +G AA+V Sbjct: 78 GSKGLEAASV 87 >UniRef50_Q3IC55 Cold shock protein n=52 Tax=Bacteria RepID=Q3IC55_PSEHT Length = 68 Score = 86.2 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK F+ G GFI G +V H SA T + L G RV+F G +GP A Sbjct: 5 TGSVKWFNEAKGFGFIEQESG-PDVFAHFSAITSDGFKTLAEGQRVQFTVTQGQKGPQAE 63 Query: 66 NV 67 N+ Sbjct: 64 NI 65 >UniRef50_C1F531 Cold shock protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F531_ACIC5 Length = 87 Score = 86.2 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 + K G+VK F+ G GFI ++V VH SA + L G VEF G + Sbjct: 18 VPVKENGVVKWFNGAKGYGFIQR-STGEDVFVHFSAIQDSGYKTLNEGEAVEFECQQGPK 76 Query: 61 GPTAANV 67 G AANV Sbjct: 77 GLNAANV 83 >UniRef50_Q11GE9 Cold-shock DNA-binding protein family n=10 Tax=Alphaproteobacteria RepID=Q11GE9_MESSB Length = 70 Score = 85.8 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGL--RGP 62 TG VK F+ G GFI P +G+K+V VHISA L+ G +V F +GP Sbjct: 3 QTGTVKFFNATKGFGFITPDNGQKDVFVHISAVEASGMRSLVDGQKVSFDVEPDRMGKGP 62 Query: 63 TAAN 66 A N Sbjct: 63 KAVN 66 >UniRef50_A4A3Y7 Cold-shock domain family protein n=2 Tax=unclassified Gammaproteobacteria RepID=A4A3Y7_9GAMM Length = 189 Score = 85.8 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 G VK F+ G GFII +G E+ VH + L G V + V +GP A Sbjct: 125 EGTVKWFNGTKGFGFIIRENG-DEIFVHHRSIIGEGRRSLRDGAPVRYRVVTTDKGPQAE 183 Query: 66 NV 67 V Sbjct: 184 EV 185 >UniRef50_Q9AN51 Blr1947 protein n=2 Tax=Bradyrhizobium japonicum RepID=Q9AN51_BRAJA Length = 120 Score = 85.8 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 30/60 (50%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G VK F+ G GF+ P DG K+V VHISA L+ G +V + V G AA Sbjct: 56 GTVKWFNPTKGYGFVAPDDGGKDVFVHISAVEKAGYTSLVEGAKVGYELVTNRSGKQAAE 115 >UniRef50_B0S1I2 Cold shock protein n=4 Tax=cellular organisms RepID=B0S1I2_FINM2 Length = 67 Score = 85.8 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 2/66 (3%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRD-AEVLIPGLRVEFCRVNGLRGP 62 G VK F+ G GFI D +V VH +A L VEF G +G Sbjct: 1 MTKGKVKWFNATKGFGFISTEDQG-DVFVHYTAIEDNGEYRKLEENQEVEFEISEGPKGL 59 Query: 63 TAANVY 68 A NV Sbjct: 60 QACNVK 65 >UniRef50_D1BKC9 Cold shock domain protein CspD n=31 Tax=Bacteria RepID=D1BKC9_SANKS Length = 317 Score = 85.8 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTP--RDAEVLIPGLRVEFCRVNGLRG 61 G V+ FD + G GF+ DG ++ VH S + L G VEF G RG Sbjct: 1 MPQGTVRWFDAERGFGFLALDDGADDLFVHASEIVGNDDGTQSLREGQSVEFEIGEGDRG 60 Query: 62 PTAANVYLS 70 P A V ++ Sbjct: 61 PQARRVQIT 69 Score = 74.3 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANV 67 V +D G GF+ P G + VH + A L+ G RV F V G RGP A +V Sbjct: 164 TVSWYDAGKGFGFVTPDSGEPDAFVHARSLAG-GATELVEGDRVSFSVVPGDRGPQAQDV 222 Query: 68 YL 69 + Sbjct: 223 RV 224 Score = 71.2 bits (174), Expect = 1e-11, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 G+V +D + G GFI P G ++ VH+S L G RV F RGP A Sbjct: 255 EGVVARYDAERGFGFITPDSGGPDLFVHVSVVREGQE--LYEGDRVRFQVRQSDRGPQAD 312 Query: 66 NVYLS 70 V L+ Sbjct: 313 RVDLA 317 Score = 70.4 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 G V ++ G GF+ P G E+ H SA V+ G RV F V G +GP A Sbjct: 80 QLGTVTWYEPTKGYGFVTPDGGGAEIFAHSSAIVGGG--VIAEGQRVAFLVVEGEKGPQA 137 Query: 65 AN 66 + Sbjct: 138 DH 139 >UniRef50_Q0BPU3 Cold shock protein n=2 Tax=Alphaproteobacteria RepID=Q0BPU3_GRABC Length = 100 Score = 85.8 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 + G VK F+ G GFI PS G K+V VHISA L G +++F G Sbjct: 32 MLHGTVKWFNPTKGYGFIAPSTGEKDVFVHISAVQRAGLRSLNEGQQLDFEIEQQQNG-R 90 Query: 64 AANVYLS 70 AA V L+ Sbjct: 91 AAAVNLT 97 >UniRef50_D0LU49 Cold-shock DNA-binding domain protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LU49_HALO1 Length = 94 Score = 85.5 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 TG VK F+ G GFI+ DG ++V VH S +L G VE+ G +G Sbjct: 1 MPTGAVKWFNNVKGYGFILREDG-QDVFVHWSNILADGYRLLTEGEIVEYELQEGPKGLF 59 Query: 64 AANVY 68 AA V Sbjct: 60 AAQVK 64 >UniRef50_D1H869 Whole genome shotgun sequence of line PN40024, scaffold_23.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1H869_VITVI Length = 208 Score = 85.1 bits (210), Expect = 7e-16, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 + TG+V+ F + G GFI P++G +++ VH S+ L G VEF V G G Sbjct: 4 ERSTGVVRWFSDQKGFGFITPNEGGEDLFVHQSSIKSDGFRSLGEGETVEFQIVLGEDGR 63 Query: 63 -TAANV 67 A +V Sbjct: 64 TKAVDV 69 >UniRef50_B0UEI2 Cold-shock DNA-binding domain protein n=11 Tax=Alphaproteobacteria RepID=B0UEI2_METS4 Length = 242 Score = 84.7 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 36/69 (52%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 S +M+G VK +D G GF+ DG K+V VH SA + L G +V V G +G Sbjct: 173 STEMSGTVKWYDPAKGFGFVSVKDGGKDVFVHRSALARAGLDSLAEGQQVTMGVVEGQKG 232 Query: 62 PTAANVYLS 70 A ++ ++ Sbjct: 233 REAQSITVA 241 Score = 68.9 bits (168), Expect = 5e-11, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANV 67 VK F+++ G GF+ DG + +HI A L+PG R+ G +GP N+ Sbjct: 65 TVKWFNKEKGFGFVELGDGSGDAFLHIRAVEAAGHADLLPGTRLTVQTAQGQKGPQVTNI 124 >UniRef50_B7RWZ3 'Cold-shock' DNA-binding domain protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RWZ3_9GAMM Length = 145 Score = 84.7 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 + G VK F+ G GFI DG +E+ VH + L G RV F N +GP Sbjct: 79 PREEGEVKWFNVSKGFGFITKDDG-EEIFVHFRSIIGEGRRGLKDGQRVSFVEANTDKGP 137 Query: 63 TAANV 67 A NV Sbjct: 138 QAENV 142 >UniRef50_A5VRP5 Cold-shock family protein n=37 Tax=Brucellaceae RepID=A5VRP5_BRUO2 Length = 83 Score = 84.7 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGL--RGP 62 TG VK F+ + G GFI P DG ++ VHISA L +V + +GP Sbjct: 15 QTGQVKFFNTEKGFGFIKPDDGGADIFVHISAVQASGLPGLADNQKVSYETEPDRRGKGP 74 Query: 63 TAANVYLS 70 A N+ ++ Sbjct: 75 KAVNITIT 82 >UniRef50_A3YG84 Cold-shock protein CspD n=2 Tax=Marinomonas RepID=A3YG84_9GAMM Length = 92 Score = 84.3 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 G VK F+ G GFI+ +++ +H S+ + L G V F G +G Sbjct: 1 MHHGTVKWFNNAKGYGFIVSESFEEDLFIHYSSILIDGYKTLKAGQSVSFKTSPGKQGLH 60 Query: 64 AANV 67 A ++ Sbjct: 61 AVDI 64 >UniRef50_Q1RLA8 Zinc finger protein n=1 Tax=Ciona intestinalis RepID=Q1RLA8_CIOIN Length = 193 Score = 84.3 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 7 GIVKTFDRKSGKGFIIPSDGRK---EVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 G K F+ K G GFI P + +V VH S+ L G RV+F +G Sbjct: 29 GNCKWFNSKQGYGFITPDTSSQEKTDVFVHQSSIDMEGFRSLQEGDRVKFWYKPSKKGLE 88 Query: 64 AANV 67 A V Sbjct: 89 AVKV 92 >UniRef50_Q38896 Glycine-rich protein 2b n=125 Tax=cellular organisms RepID=GRP2B_ARATH Length = 201 Score = 84.3 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG- 61 + G VK FD + G GFI PSDG ++ VH S+ L VEF G Sbjct: 13 DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72 Query: 62 PTAANV 67 P A V Sbjct: 73 PKAIEV 78 >UniRef50_D0KX28 Cold-shock DNA-binding domain protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KX28_HALNC Length = 143 Score = 84.3 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 + G VK F+ G GFI+ +G +++ VH A L+ G +VE+ G +GP Sbjct: 77 REVGHVKWFNTDKGFGFIVRENG-EDLFVHFRAVGDGSTLQLVEGQKVEYHIGQGRKGPQ 135 Query: 64 AANVYL 69 A V + Sbjct: 136 AEQVVI 141 >UniRef50_B3QZU5 Cold shock-like protein n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3QZU5_PHYMT Length = 85 Score = 83.9 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Query: 2 SRKMTGIVKTFDRKSGKGFIIP-SDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 + K+ G+ + F++ G GF+ +++ H + L G VEF V G + Sbjct: 10 TEKIKGVCRWFNKDKGFGFLQKLDSDSQDIFFHQTDIKCEGFRSLDEGEEVEFTLVQGEK 69 Query: 61 GPTAANV 67 GP A + Sbjct: 70 GPQAIEI 76 >UniRef50_C4FWF1 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FWF1_9FIRM Length = 90 Score = 83.9 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 + G VK F+ G GFI DG +V VH S + L G V + RG Sbjct: 25 MLNGTVKFFNVDKGFGFIAGQDG-VDVFVHFSNIQADGFKTLNEGQTVSYDVQETSRGLQ 83 Query: 64 AANV 67 A NV Sbjct: 84 AINV 87 >UniRef50_P55390 Probable cold shock protein y4cH n=110 Tax=Proteobacteria RepID=Y4CH_RHISN Length = 69 Score = 83.9 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 27/58 (46%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 TG VK F+ G GFI P DG +V VHISA L G ++ + V + Sbjct: 1 MMATGTVKWFNATKGFGFIQPDDGSADVFVHISAVERAGLRELKDGQKISYELVKDRK 58 >UniRef50_A5N624 CspA n=10 Tax=cellular organisms RepID=A5N624_CLOK5 Length = 67 Score = 83.9 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFT-PRDAEVLIPGLRVEFCRVNGLRGP 62 TG VK F+ + G GFI G +V VH +A + L G +V+F G +G Sbjct: 1 MKTGTVKWFNSEKGFGFIEVP-GENDVFVHFTAIQSNEARKNLEEGQKVQFDVEEGPKGL 59 Query: 63 TAANV 67 AANV Sbjct: 60 QAANV 64 >UniRef50_B6QZ94 Cold-shock DNA-binding domain protein n=1 Tax=Pseudovibrio sp. JE062 RepID=B6QZ94_9RHOB Length = 215 Score = 83.9 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGL--R 60 + +G VK F G GFI P +G +V VHISA L G R+ F + Sbjct: 120 PRQSGTVKFFKLDKGFGFITPDEGENDVFVHISAVERSGLTTLDSGQRISFETEPDRRGK 179 Query: 61 GPTAANVYL 69 GP A + L Sbjct: 180 GPKAVELRL 188 >UniRef50_Q47TE2 Cold-shock DNA-binding protein family n=9 Tax=Actinobacteria (class) RepID=Q47TE2_THEFY Length = 127 Score = 83.9 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 28/66 (42%), Positives = 33/66 (50%), Gaps = 2/66 (3%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 TG VK +D G GF+ DG + V +H SA P L PG RVEF V G +G Sbjct: 1 MPTGKVKWYDAGKGFGFLTKDDGGE-VFLHASAL-PPGTTTLRPGQRVEFGIVEGRKGTQ 58 Query: 64 AANVYL 69 A V L Sbjct: 59 ALQVRL 64 >UniRef50_B4SCC3 Cold-shock DNA-binding domain protein n=4 Tax=cellular organisms RepID=B4SCC3_PELPB Length = 69 Score = 83.5 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M ++ G VK F+ + G GFI G K+V VH SA + L+ G +V G + Sbjct: 1 MGTQVEGTVKWFNEEKGYGFIE-QKGGKDVFVHHSAINGTGRKTLVEGQKVMMEVTQGAK 59 Query: 61 GPTAANV 67 G A +V Sbjct: 60 GLQAEDV 66 >UniRef50_A8ILK3 Cold shock protein n=9 Tax=Proteobacteria RepID=A8ILK3_AZOC5 Length = 237 Score = 83.5 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 33/69 (47%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 + + G VK ++ + G GFI G K+V VH++ + L G RV G +G Sbjct: 168 TEERVGTVKWYNPEKGFGFIAVEGGGKDVFVHVTVVSRSGLADLSEGQRVVVQVGQGPKG 227 Query: 62 PTAANVYLS 70 P A + ++ Sbjct: 228 PEARGIEVA 236 Score = 66.6 bits (162), Expect = 3e-10, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 27/60 (45%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANV 67 VK F+ + G GF+ SDG +V +H A E + PG ++ G +G V Sbjct: 69 TVKWFNPEKGFGFVELSDGSGDVFLHARALEAAGQESVPPGSKLSVRVGQGQKGRQVTEV 128 >UniRef50_D0MCR5 Cold-shock DNA-binding domain protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MCR5_RHOM4 Length = 76 Score = 83.1 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA-EVLIPGLRVEFCRVNGLRGPT 63 G VK F+ G GFI P+DG K+V VH + E L G V + +G + Sbjct: 3 QRGRVKWFNIDKGYGFIEPNDGSKDVFVHRNNVPGLGWDEGLREGEEVSYEVERTPKGLS 62 Query: 64 AANV 67 A NV Sbjct: 63 AMNV 66 >UniRef50_D0MDE8 Cold-shock DNA-binding domain protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MDE8_RHOM4 Length = 95 Score = 83.1 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 2/68 (2%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHIS-AFTPRDAEVLIPGLRVEFCRVNGL 59 M+ + G+VK FD K G GFII +G ++ VH S + R + L G VEF G Sbjct: 1 MAAR-RGVVKWFDAKKGYGFIIHPEGGADIFVHYSQIISERRFKTLRTGQIVEFELHEGP 59 Query: 60 RGPTAANV 67 +G A NV Sbjct: 60 KGLHARNV 67 >UniRef50_A9W6T1 Cold-shock protein DNA-binding n=32 Tax=Bacteria RepID=A9W6T1_METEP Length = 281 Score = 83.1 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 38/68 (55%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 S +MTG VK +D G GF+ +DG K+V VH SA + + L G +V V G +G Sbjct: 212 SVEMTGTVKWYDPAKGFGFVSVNDGGKDVFVHRSALSRAGLDSLAEGQQVTLGVVEGQKG 271 Query: 62 PTAANVYL 69 A+++ + Sbjct: 272 REASSITV 279 Score = 67.4 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANV 67 VK F+++ G GF+ DG + +HI A + L+PG R+ G +GP V Sbjct: 81 TVKWFNKEKGFGFVELGDGSGDAFLHIRAVEAAGHDDLLPGTRLTVQTAQGQKGPQVTAV 140 Query: 68 Y 68 Sbjct: 141 N 141 >UniRef50_D2QP83 Cold-shock DNA-binding domain protein n=5 Tax=Bacteroidetes RepID=D2QP83_9SPHI Length = 198 Score = 82.8 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 TG VK F+ G GFI ++ VH+SA + + +V F +G +G A Sbjct: 137 QTGTVKFFNETKGFGFIKSDSSGDDIFVHVSALIDQ----IHENDKVRFSIEHGRKGLNA 192 Query: 65 ANVYL 69 N+ L Sbjct: 193 VNIKL 197 >UniRef50_A7HXE8 Putative cold-shock DNA-binding domain protein n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HXE8_PARL1 Length = 199 Score = 82.4 bits (203), Expect = 5e-15, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 34/67 (50%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 +S ++TG+VK FD G GFIIP +G +V VH+S E L G V V + Sbjct: 34 VSFEITGVVKWFDAVKGYGFIIPENGGDDVLVHLSCLKQAGLEALDEGTTVTCEAVRRPK 93 Query: 61 GPTAANV 67 G A V Sbjct: 94 GAQAIRV 100 Score = 62.3 bits (151), Expect = 5e-09, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANV 67 IVK F+R G GF+ +G ++ +H+ L+PG ++ G +G A + Sbjct: 137 IVKWFNRARGYGFVTRGEGTPDIFIHMETLRRYGIRDLLPGQQINVRFGEGPKGLMVAEI 196 >UniRef50_B9JZ17 Cold shock protein n=106 Tax=Alphaproteobacteria RepID=B9JZ17_AGRVS Length = 71 Score = 82.0 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGL--RGPT 63 TGIVK F+ G GFI P +G ++ VHISA L +V F +GP Sbjct: 4 TGIVKFFNNDKGFGFIKPDNGGADIFVHISAVQASGLNGLSENQKVSFDTEPDRRGKGPK 63 Query: 64 AANVYLS 70 A N+ ++ Sbjct: 64 AVNLQIA 70 >UniRef50_B9F7B8 Putative uncharacterized protein n=1 Tax=Oryza sativa Japonica Group RepID=B9F7B8_ORYSJ Length = 233 Score = 82.0 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 +S ++ G VK FD +G GFI P D +++ +H S+ D L +E +G Sbjct: 2 VSERVKGTVKGFDATNGFGFITPDDDGEDLFIHQSSLKFDDYRSLNDSDVIELSVGSGND 61 Query: 61 GP-TAANV 67 G A +V Sbjct: 62 GRNKAVDV 69 >UniRef50_C8WCQ1 Cold-shock DNA-binding domain protein n=18 Tax=Alphaproteobacteria RepID=C8WCQ1_ZYMMN Length = 303 Score = 82.0 bits (202), Expect = 6e-15, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 K +G VK F+ G GFI DG+ + VHISA L G R+ F RG Sbjct: 233 EKSSGTVKFFNAMKGFGFIQRDDGQPDAFVHISAVERAGLPSLNEGDRLSFELEVDRRGK 292 Query: 63 TAANVYLS 70 AA V L+ Sbjct: 293 YAA-VNLA 299 Score = 70.0 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG+VK F+ + G GF++ DG ++V VHISA L G + F V+ +A Sbjct: 137 TGVVKFFNSQKGFGFVVRDDGGEDVFVHISAVEQAGLTGLAEGQPLSFTLVDRGGRVSAT 196 Query: 66 N 66 N Sbjct: 197 N 197 >UniRef50_B3EP04 Cold-shock DNA-binding domain protein n=13 Tax=Chlorobiaceae RepID=B3EP04_CHLPB Length = 96 Score = 82.0 bits (202), Expect = 6e-15, Method: Composition-based stats. Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 3/68 (4%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPR-DAEVLIPGLRVEFCRVNGL 59 MSRK VK FD K G GFI+ DG +++ VH SA +VL VEF Sbjct: 1 MSRKS--KVKWFDGKKGYGFIVNPDGGEDIFVHFSAIVSEQSFKVLNQDAEVEFEIDQTQ 58 Query: 60 RGPTAANV 67 +G A NV Sbjct: 59 KGMQAKNV 66 >UniRef50_Q9Z3S6 Cold shock protein cspA n=72 Tax=Bacteria RepID=CSPA_RHIME Length = 69 Score = 82.0 bits (202), Expect = 6e-15, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 27/57 (47%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 +G VK F+ G GFI P DG +V VH SA L+ G +V + V + Sbjct: 1 MNSGTVKWFNSTKGFGFIQPDDGATDVFVHASAVERAGMRSLVEGQKVTYDIVRDTK 57 >UniRef50_Q1NG42 Cold shock protein n=3 Tax=Alphaproteobacteria RepID=Q1NG42_9SPHN Length = 153 Score = 81.6 bits (201), Expect = 8e-15, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 30/63 (47%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 + +G VK F+ G GFI DG+ + VHISA L G R++F RG Sbjct: 83 ERASGTVKFFNAMKGFGFIQRDDGQPDAFVHISAVERAGMAALNEGDRLDFELEVDRRGK 142 Query: 63 TAA 65 AA Sbjct: 143 YAA 145 >UniRef50_Q2S3Y3 'Cold-shock' DNA-binding domain, putative n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3Y3_SALRD Length = 69 Score = 81.2 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 TG VK F G GF+ P +G +V +H S D L G R+EF +G Sbjct: 1 METGTVKWFSPAEGYGFVEPDNGEDDVFLHHSEVPDED---LEEGDRLEFEIEETEKGLN 57 Query: 64 AANV 67 A N+ Sbjct: 58 AVNI 61 >UniRef50_Q4H2L8 Y-box protein 1/2/3 n=2 Tax=Ciona intestinalis RepID=Q4H2L8_CIOIN Length = 320 Score = 81.2 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRV 56 ++ +G+VK F+ ++G GF+ D +++V +H +A + + G VEF V Sbjct: 22 LASHCSGVVKWFNVRNGYGFVNRDDNKEDVFIHQTAIIKNNPKKYLRSVGDGENVEFDVV 81 Query: 57 NGLRG-PTAANV 67 G +G P AANV Sbjct: 82 EGEKGLPEAANV 93 >UniRef50_B0T8T3 Cold-shock DNA-binding domain protein n=40 Tax=Bacteria RepID=B0T8T3_CAUSK Length = 179 Score = 81.2 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR--G 61 G+VK F+ G GFI P DG ++V VHI+A L G +V + R Sbjct: 1 MANGVVKWFNPAKGFGFIQPEDGGQDVFVHIAAVERSGLSGLNEGDQVTYEMEEDRRSGK 60 Query: 62 PTAANVYLS 70 +A N+ ++ Sbjct: 61 TSAGNLRVT 69 Score = 78.1 bits (192), Expect = 8e-14, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR--GPTAA 65 +VK F+ G GFI P +G ++ VHISA L G +V + R +A Sbjct: 115 VVKWFNSTKGFGFIQPDNGGGDIFVHISAVERAGLRGLNEGQQVGYELEQDRRSGKTSAG 174 Query: 66 NVYL 69 N+ + Sbjct: 175 NLRI 178 >UniRef50_Q1YTJ3 Cold shock protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTJ3_9GAMM Length = 89 Score = 80.8 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 27/63 (42%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK F G GFI P +G +E+ H + L RV + +G G A Sbjct: 4 TGRVKWFSNDRGFGFIEPDNGERELFAHHQNIIMEGYKTLKCFQRVTYDVEHGKNGRHAV 63 Query: 66 NVY 68 N+ Sbjct: 64 NII 66 >UniRef50_D1AYL8 Cold-shock DNA-binding domain protein n=3 Tax=cellular organisms RepID=D1AYL8_STRM9 Length = 65 Score = 80.8 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 M G VK F+ K G GFI DG K+ +H S + + G VEF +G +GP A Sbjct: 1 MLGKVKWFNEKKGFGFISGEDG-KDYFLHFSKINKGGFKTVNEGEEVEFDIEDGEKGPQA 59 Query: 65 ANV 67 NV Sbjct: 60 TNV 62 >UniRef50_B1MZK9 Cold shock protein n=15 Tax=Bacteria RepID=B1MZK9_LEUCK Length = 74 Score = 80.8 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 33/65 (50%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 TGIVK + ++ G G+I P G ++V VH + + L G +V + V G + P Sbjct: 1 MKTGIVKIWQKERGYGYITPDAGGEDVFVHFNGIDMPGFKALKQGEKVSYVLVQGYKAPQ 60 Query: 64 AANVY 68 AA V Sbjct: 61 AAQVQ 65 >UniRef50_P92186 Protein lin-28 n=5 Tax=Caenorhabditis RepID=LIN28_CAEEL Length = 227 Score = 80.4 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 2/68 (2%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVN--GL 59 + + G K F+ G GF+I +++ VH S + L G RV + Sbjct: 50 TPRYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNLNMQGFRSLDEGERVSYYIQERSNG 109 Query: 60 RGPTAANV 67 +G A V Sbjct: 110 KGREAYAV 117 >UniRef50_B1Z823 Cold-shock DNA-binding domain protein n=34 Tax=Alphaproteobacteria RepID=B1Z823_METPB Length = 69 Score = 80.4 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR-GP 62 TG VK F+ G GFI P +G K+V VHISA L+ G ++ + + R G Sbjct: 1 MDTGTVKWFNETKGYGFIQPDNGGKDVFVHISAVERAGLRNLVEGQKISYEVLTDKRSGK 60 Query: 63 TAA 65 AA Sbjct: 61 DAA 63 >UniRef50_Q23960 Y-box protein n=1 Tax=Dugesia japonica RepID=Q23960_DUGJA Length = 266 Score = 80.4 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 4/67 (5%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRVNGLR 60 +TG VK F+ K G GF+ +D ++++ +H SA + + + G + F V G + Sbjct: 29 ITGKVKWFNVKRGYGFVCRNDNQEDIFIHQSAIVKSNPDHPRKSVGEGEEILFDIVKGAK 88 Query: 61 GPTAANV 67 G AANV Sbjct: 89 GNEAANV 95 >UniRef50_A4FKV9 Putative DNA-binding protein n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FKV9_SACEN Length = 150 Score = 80.4 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 28/66 (42%), Positives = 33/66 (50%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 TG V FD G GFI P G ++V +H S EVL G+RVEF V G +G Sbjct: 1 MKTGTVVRFDGIKGYGFIAPDAGGEDVFLHASILDEELKEVLRGGMRVEFEAVPGNQGTK 60 Query: 64 AANVYL 69 A V L Sbjct: 61 AMTVNL 66 >UniRef50_Q2S0T4 Conserved domain protein n=2 Tax=Bacteria RepID=Q2S0T4_SALRD Length = 110 Score = 80.4 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFT-PRDAEVLIPGLRVEFCRVNGLRGP 62 T VK FD K G GFI D ++V VH S D + L V F +G +G Sbjct: 1 MRTSTVKWFDAKKGYGFIHHPDDGEDVFVHYSNIQSDDDFKTLKSDQHVRFEMNDGPKGL 60 Query: 63 TAANV 67 A V Sbjct: 61 HALEV 65 >UniRef50_P46449 Cold shock-like protein cspD n=53 Tax=Bacteria RepID=CSPD_HAEIN Length = 72 Score = 80.1 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 GIVK F+ G GFI ++ H S L G +V+F ++ +G Sbjct: 1 MEIGIVKWFNNAKGFGFISAEGVDADIFAHYSVIEMDGYRSLKAGQKVQFEVLHSDKGSH 60 Query: 64 AANVY 68 A + Sbjct: 61 ATKII 65 >UniRef50_B6IXJ6 Cold shock-like protein CspA n=1 Tax=Rhodospirillum centenum SW RepID=B6IXJ6_RHOCS Length = 199 Score = 80.1 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 28/66 (42%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 ++ G VK F G GF+ DG K+V VH S E L G RV +G Sbjct: 132 ELEGSVKWFKDDKGFGFVTTDDGGKDVFVHKSILRRAGLESLQSGERVLMRVTEAPKGRE 191 Query: 64 AANVYL 69 A + L Sbjct: 192 ATWIQL 197 Score = 67.4 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 25/59 (42%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 + VK F+ G GF+ P+DG + +H S + L G V G +GP Sbjct: 43 VRATVKWFNGVKGFGFVAPADGTPDAFLHASVLSRVGLSDLAEGAEVMVVIGPGPKGPQ 101 >UniRef50_P91306 Y-box protein 2 n=6 Tax=Caenorhabditis RepID=P91306_CAEEL Length = 267 Score = 79.3 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 5/72 (6%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRD-----AEVLIPGLRVEFCR 55 ++ + G VK + GFI +DG K++ VH +A L V F Sbjct: 62 ITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDL 121 Query: 56 VNGLRGPTAANV 67 V G GP AANV Sbjct: 122 VEGKNGPEAANV 133 >UniRef50_UPI0000589074 PREDICTED: similar to ENSANGP00000011455 n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000589074 Length = 234 Score = 79.3 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 21/63 (33%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 G K F GF+ P DG +V VH L VE+ +G A Sbjct: 63 YRGKCKWFSLAKCYGFLTPDDGSGDVFVHQRVIKMVGYRSLDTNEEVEYKFQFSEKGREA 122 Query: 65 ANV 67 V Sbjct: 123 TTV 125 >UniRef50_D1A5P8 Cold-shock DNA-binding domain protein n=33 Tax=Actinobacteridae RepID=D1A5P8_THECD Length = 135 Score = 79.3 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK +D G GF+ DG + V VH SA P L G RVEF V G RG A Sbjct: 7 TGKVKWYDAGKGFGFLTRDDGGE-VFVHSSAL-PSGVTSLKTGQRVEFGVVEGRRGQQAL 64 Query: 66 NVY 68 +V Sbjct: 65 SVR 67 >UniRef50_A0ACJ4 Putative DNA-binding protein n=2 Tax=Streptomyces RepID=A0ACJ4_STRAM Length = 172 Score = 79.3 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G + FD G GFI P +G ++V +H++ +L PG++VEF G RG A+ Sbjct: 9 GKIIRFDEFRGYGFIAPDNGGEDVFIHVNDLAFD-KRLLGPGMKVEFDVEEGDRGLKASR 67 Query: 67 VYL 69 V + Sbjct: 68 VRI 70 >UniRef50_B9KKC8 Cold-shock DNA-binding protein family n=21 Tax=Rhodobacteraceae RepID=B9KKC8_RHOSK Length = 83 Score = 78.9 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 32/62 (51%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 TG VK F+ G GFI P DG K+V VHISA + L ++ + +G G + Sbjct: 16 MPTGTVKWFNSTKGFGFIAPDDGGKDVFVHISAVERAGLKGLSDNQKIGYELQSGRDGRS 75 Query: 64 AA 65 +A Sbjct: 76 SA 77 >UniRef50_B8KR01 'Cold-shock' DNA-binding domain protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KR01_9GAMM Length = 123 Score = 78.9 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 G +K F+ G GFI DG + V VH + PG RV + RGP A Sbjct: 60 KGSIKWFNATKGFGFITGDDGNE-VFVHFRNVEQLSKREIKPGQRVAYRVTETERGPQAE 118 Query: 66 NV 67 +V Sbjct: 119 DV 120 >UniRef50_Q5JKD6 Cold shock domain protein 2-like protein n=1 Tax=Oryza sativa Japonica Group RepID=Q5JKD6_ORYSJ Length = 221 Score = 78.9 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 +S ++ G+VK FD +G FI P DG +++ +H S+ L +E + Sbjct: 2 VSERVKGMVKGFDATNGFSFITPDDGSEDLFIHQSSLKFDGYRSLNDDDVIELSVGSSDD 61 Query: 61 GP-TAANV 67 G A +V Sbjct: 62 GRTKAVDV 69 >UniRef50_A8PLB9 'Cold-shock' DNA-binding domain containing protein n=1 Tax=Brugia malayi RepID=A8PLB9_BRUMA Length = 205 Score = 78.9 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 8/71 (11%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVH--------ISAFTPRDAEVLIPGLRVEFCRV 56 G K F+ G GFI P +G +V VH S L G RV F Sbjct: 9 QVGTCKWFNVLKGYGFITPDEGGDDVFVHQASGVFFIQSELNMDGFRSLDAGERVRFVIR 68 Query: 57 NGLRGPTAANV 67 G A V Sbjct: 69 RRPEGNEATAV 79 >UniRef50_Q4SGH3 Chromosome undetermined SCAF14594, whole genome shotgun sequence. (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4SGH3_TETNG Length = 179 Score = 78.9 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 7/69 (10%) Query: 6 TGIVKTFDRKSGKGFII-------PSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNG 58 +G+ K F+ + G GFI P D +V VH S L G +EF Sbjct: 5 SGVCKWFNMRMGFGFISMSSRDGAPLDQNLDVFVHQSKLHMEGFRSLREGEALEFSFKKS 64 Query: 59 LRGPTAANV 67 +G A V Sbjct: 65 SKGLEAVRV 73 >UniRef50_D1S746 Cold-shock DNA-binding domain protein n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1S746_9ACTO Length = 165 Score = 78.5 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 +TG V FD G GFI P DG +V VH + L PG+ VE+ V RGP Sbjct: 7 MLTGKVVRFDEVRGYGFIAPDDGSDDVFVHANMLDGD-KWALTPGVPVEYDAVETERGPK 65 Query: 64 AANVYLS 70 A V +S Sbjct: 66 AVLVRVS 72 >UniRef50_A3YF52 Cold-shock protein, DNA-binding n=2 Tax=Marinomonas RepID=A3YF52_9GAMM Length = 79 Score = 78.5 bits (193), Expect = 6e-14, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M+ K+ G VK F+ G GFI + +V VH + + L G V F Sbjct: 1 MTDKLKGTVKWFNDSKGVGFIQRDN-EADVFVHYKSIVSEGHKTLKKGQAVSFFITENDF 59 Query: 61 GPTAANVYL 69 G A+ V L Sbjct: 60 GRQASEVAL 68 >UniRef50_A4TN10 Cold-shock DNA-binding protein family n=35 Tax=Enterobacteriaceae RepID=A4TN10_YERPP Length = 69 Score = 78.1 bits (192), Expect = 7e-14, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M+ KM G VK F++ G GFI P DG +V V+ +A + L G VEF + Sbjct: 1 MTLKM-GRVKWFNQSEGYGFISPHDGGSDVYVNKTAIANTKNKSLNEGQDVEFSTYRSIH 59 Query: 61 GPTAANVY 68 GP+AA+V Sbjct: 60 GPSAADVI 67 >UniRef50_Q0VN88 Cold-shock domain family protein n=2 Tax=Alcanivorax RepID=Q0VN88_ALCBS Length = 76 Score = 77.8 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 G VK F+ G GFI+ G +E+ VH A L G +V F RG A Sbjct: 11 QRGEVKWFNPNKGFGFILTDSG-EELFVHFKAVQNGGRRSLRTGTKVRFDTRMSDRGEQA 69 Query: 65 ANVYL 69 NVY+ Sbjct: 70 DNVYI 74 >UniRef50_Q5YVF2 Putative cold shock protein n=1 Tax=Nocardia farcinica RepID=Q5YVF2_NOCFA Length = 122 Score = 77.4 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 23/63 (36%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 G V FD + G GFI P D V V A L+ G V + GP A Sbjct: 53 HGTVAWFDAEKGFGFITPDDRSPAVFVEFHAIEAVGYRTLVAGGPVVYRAEETKAGPEAV 112 Query: 66 NVY 68 V Sbjct: 113 AVR 115 >UniRef50_A5V9E9 Cold-shock DNA-binding protein family n=2 Tax=cellular organisms RepID=A5V9E9_SPHWW Length = 198 Score = 77.4 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 26/66 (39%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 + + G VK FD G GFI R +V VH S L G R+ V RG Sbjct: 31 AETVVGAVKWFDATRGFGFIATDGDRGDVLVHFSVLRDHGRRTLPEGARIACEVVARDRG 90 Query: 62 PTAANV 67 A + Sbjct: 91 LQARRI 96 Score = 57.3 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 IVK F+R G GF++ +++ +H+ L+P R++ G +GP A Sbjct: 136 IVKWFNRLKGYGFLVRDGETQDIFIHMETVRRAGLPDLLPETRMKARIAEGRKGPLAVE 194 >UniRef50_C1E859 Cold-shock protein with RNA binding domain n=2 Tax=Micromonas RepID=C1E859_9CHLO Length = 305 Score = 77.0 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 1/65 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP- 62 K G+V F+ G GF+ DG +V VH S L VEF G Sbjct: 43 KYKGVVNWFNVAKGFGFVTRDDGVGDVFVHQSDIYAEGFRSLRDQEPVEFELEPMGDGRY 102 Query: 63 TAANV 67 A V Sbjct: 103 KAVKV 107 >UniRef50_D1U4V2 Cold-shock DNA-binding domain protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4V2_9DELT Length = 76 Score = 77.0 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 + G V F+ K G GFI DG +V VH + + L PG RV + + P Sbjct: 1 MRREGKVTWFNDKKGFGFITGDDG-LDVFVHYTEIVRDGFQSLEPGERVSYAVTDEEIAP 59 Query: 63 TAANVYLS 70 A +V+L+ Sbjct: 60 KAVDVHLA 67 >UniRef50_Q1RHK6 Cold shock-like protein cspA n=15 Tax=Rickettsia RepID=CSPA_RICBR Length = 70 Score = 77.0 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 30/69 (43%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M+ + G VK F+ GFI +G K+V VH SA L G V F + Sbjct: 1 MTTNIVGKVKWFNPTKNFGFIEQENGGKDVFVHRSAVDAAGLAGLNEGQDVIFDLEDKNG 60 Query: 61 GPTAANVYL 69 +A N+ + Sbjct: 61 KISAVNLRI 69 >UniRef50_Q4UBG6 Cold shock protein, putative n=2 Tax=Theileria RepID=Q4UBG6_THEAN Length = 95 Score = 76.6 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 ++ G+ K F+ K G GFI +G ++V VH S L +VE + Sbjct: 2 TRLNGVCKWFNNKKGYGFITLENG-EDVFVHQSEIYADGFRSLHENEKVELEVIMDNNRK 60 Query: 63 TAANV 67 A +V Sbjct: 61 KAIHV 65 >UniRef50_B3DPK3 Cold shock protein n=7 Tax=Bifidobacterium RepID=B3DPK3_BIFLD Length = 79 Score = 76.6 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 4/68 (5%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRD----AEVLIPGLRVEFCRVNGL 59 G VK F K G GFI P DG ++V VH + ++L G RVE+ + Sbjct: 1 MAQGTVKFFLAKKGFGFIQPDDGGEDVFVHYAEIKDDGSTNKFKMLYEGDRVEYTPASSG 60 Query: 60 RGPTAANV 67 +G A +V Sbjct: 61 KGTQAKDV 68 >UniRef50_A3VSH0 Cold shock protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VSH0_9PROT Length = 173 Score = 76.6 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 28/67 (41%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 SR++ G VK FD+ G GFI G ++V +H S G V + +G Sbjct: 11 SREIRGFVKWFDQTKGYGFITDEAGGRDVLIHSSCLKQSGRATAPEGAIVTCEAIESEKG 70 Query: 62 PTAANVY 68 A + Sbjct: 71 LQATRII 77 Score = 63.9 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANV 67 VK F R G GF+ ++ +++ VH+ L PG R+ G +G AA + Sbjct: 108 TVKWFSRAKGYGFLTATNANEDIFVHMEVVRAAGLSELQPGQRLRASYGRGTKGLLAAAI 167 >UniRef50_Q6ZN17 Protein lin-28 homolog B n=13 Tax=Tetrapoda RepID=LN28B_HUMAN Length = 250 Score = 76.2 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 7/71 (9%) Query: 4 KMTGIVKTFDRKSGKGFII-------PSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRV 56 + TG K F+ + G GFI P D +V VH S L G VEF Sbjct: 29 RGTGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFK 88 Query: 57 NGLRGPTAANV 67 +G + V Sbjct: 89 KSSKGLESIRV 99 >UniRef50_UPI0001B4CA82 DNA-binding protein n=1 Tax=Streptomyces viridochromogenes DSM 40736 RepID=UPI0001B4CA82 Length = 164 Score = 76.2 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 1/67 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 G+V FD G GFI P +G ++V VH++ L G RV F ++G RG Sbjct: 1 MAQGVVVRFDDVKGYGFIAPDNGGEDVFVHVNDLAEPGT-TLTSGTRVVFDVLDGGRGLK 59 Query: 64 AANVYLS 70 A +V L+ Sbjct: 60 AYDVSLA 66 >UniRef50_Q475L4 Cold-shock DNA-binding protein family n=1 Tax=Ralstonia eutropha JMP134 RepID=Q475L4_RALEJ Length = 195 Score = 76.2 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 2/69 (2%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M+ +++G +K++++ G GFI PS+G +++ VHIS + + + G + F Sbjct: 8 MNTRISGTLKSWNKDKGFGFIAPSNGGRDIFVHISDYPRQG-GMPKIGESLTFLVTLNQD 66 Query: 61 GP-TAANVY 68 G A NV Sbjct: 67 GKNKAINVQ 75 >UniRef50_Q1GT29 Cold-shock DNA-binding protein family n=1 Tax=Sphingopyxis alaskensis RepID=Q1GT29_SPHAL Length = 90 Score = 76.2 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 + G VK F+ G GFI DG + VHI+A + L RV + G G Sbjct: 21 TLMAIGTVKFFNNDKGYGFIENEDGSGDSFVHITAVQAAGMDTLNKEQRVSYELETGKNG 80 Query: 62 P-TAANVY 68 +A N+ Sbjct: 81 KVSAINLQ 88 >UniRef50_C4RFH3 DNA binding protein n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RFH3_9ACTO Length = 150 Score = 76.2 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 +TG V FD G GFI P G +V VH + L PG+ VE+ V RGP Sbjct: 1 MLTGRVVRFDEVRGYGFIAPDGGGDDVFVHANTVDGD-KWALGPGVPVEYEAVENERGPK 59 Query: 64 AANVYL 69 A V + Sbjct: 60 ALTVRV 65 >UniRef50_B6KPP5 Glycine-rich protein 2, putative n=3 Tax=Toxoplasma gondii RepID=B6KPP5_TOXGO Length = 209 Score = 75.8 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP-T 63 G K FD K G GFI DG ++ VH + + L G VEF G G Sbjct: 88 QRGHCKWFDSKKGFGFITAEDG-TDLFVHQTEIKAQGFRNLAEGESVEFRVQVGHDGKRK 146 Query: 64 AANV 67 A +V Sbjct: 147 AVSV 150 >UniRef50_A4V6J7 Y-Box factor protein (Fragment) n=1 Tax=Dugesia japonica RepID=A4V6J7_DUGJA Length = 178 Score = 75.8 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA---EVLIPGLRVEFCRVNGLRGPT 63 G VK ++ K G GFI D ++V VH SA + + L V F V G +G Sbjct: 5 GKVKWYNVKKGYGFIHRDDVDEDVFVHQSAISRCQPGKQKSLGEDEDVLFDVVKGSKGNE 64 Query: 64 AANV 67 A NV Sbjct: 65 AMNV 68 >UniRef50_C2E292 Cold-shock protein n=9 Tax=Lactobacillus RepID=C2E292_9LACO Length = 73 Score = 75.8 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 28/66 (42%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 TG VK FD +G GFI + V +A + L G RV + G +G Sbjct: 1 MRTGTVKQFDSAAGFGFIDDDLTKASYFVFYTAIKEAGYKSLEIGQRVRYQLAQGKKGLQ 60 Query: 64 AANVYL 69 NVY+ Sbjct: 61 CINVYI 66 >UniRef50_Q2W0B3 Cold shock protein n=3 Tax=Magnetospirillum RepID=Q2W0B3_MAGSA Length = 200 Score = 75.8 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 33/68 (48%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 + + G+VK F + G GF+ G K+V VH+ A + L G RV GL+G Sbjct: 132 TETVEGVVKFFSAEKGFGFVACDQGGKDVFVHVKALERSGIKTLESGQRVRVTTTLGLKG 191 Query: 62 PTAANVYL 69 P A V + Sbjct: 192 PQADTVAI 199 Score = 67.4 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 29/64 (45%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 ++ VK F+ G GF+ PSDG + +HISA + G + G RGP Sbjct: 49 VSATVKWFNASKGFGFVAPSDGSPDAFLHISALERAGLTQVAEGATLVVDLGAGQRGPQV 108 Query: 65 ANVY 68 V+ Sbjct: 109 VMVH 112 >UniRef50_C9NB66 Cold-shock DNA-binding domain protein n=1 Tax=Streptomyces flavogriseus ATCC 33331 RepID=C9NB66_9ACTO Length = 70 Score = 75.8 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 31/67 (46%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 G V+ F + G G+I PS G E+ VH SA L+ G V F V RGP Sbjct: 1 MAEGTVQVFSAEKGYGYIRPSTGGPEIIVHFSAIVEACPVGLVAGQTVSFDIVQRRRGPE 60 Query: 64 AANVYLS 70 A V +S Sbjct: 61 AERVQIS 67 >UniRef50_B9T6D3 Cellular nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9T6D3_RICCO Length = 266 Score = 75.4 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRD-AEVLIPGLRVEFCRV-NGLRG 61 + G V F + G GFI P DG +++ VH SA L VEF + Sbjct: 13 RSRGKVVRFSDRKGFGFIKPDDGGEDLFVHHSAIKSDGRYRSLAEDDVVEFTVSLSDDNK 72 Query: 62 PTAANV 67 A +V Sbjct: 73 YQAVDV 78 >UniRef50_A7BYF1 Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7BYF1_9GAMM Length = 189 Score = 75.4 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 2/64 (3%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 M GIV FD+K G GFI ++V VH+ + + L PG +VEF +G +A Sbjct: 1 MEGIVVKFDKKRGFGFIRSDKFSEDVFVHLKNIREQ--QSLSPGQKVEFDTEQTDKGLSA 58 Query: 65 ANVY 68 NV Sbjct: 59 INVI 62 >UniRef50_D1XSW6 Cold-shock DNA-binding domain protein n=3 Tax=Streptomyces RepID=D1XSW6_9ACTO Length = 143 Score = 75.4 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 G V FD G GFI P G ++V +H++ + + GL VEF +G RG Sbjct: 1 MAAGRVIRFDGMRGYGFIAPEHGGEDVFMHVNDLLIPE-SAVRAGLMVEFEIEDGDRGLK 59 Query: 64 AANVYLS 70 A+ V L+ Sbjct: 60 ASEVRLA 66 >UniRef50_B4SFC0 Cold-shock DNA-binding domain protein n=1 Tax=Pelodictyon phaeoclathratiforme BU-1 RepID=B4SFC0_PELPB Length = 74 Score = 75.4 bits (185), Expect = 6e-13, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 31/64 (48%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK F++ G GFIIP +G +V VHI+ L +V++ V A Sbjct: 9 TGTVKWFNKMKGFGFIIPDNGGADVFVHINELEKSGLATLNEADKVKYDMVEKNGKVAAG 68 Query: 66 NVYL 69 N+ L Sbjct: 69 NIQL 72 >UniRef50_Q2RZT3 Conserved domain protein n=2 Tax=Salinibacter ruber DSM 13855 RepID=Q2RZT3_SALRD Length = 75 Score = 75.1 bits (184), Expect = 6e-13, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA-EVLIPGLRVEFCRVNGLRGP 62 G +K FD G GFI P DG ++V +H + + + E L G +E+ +G Sbjct: 1 MEKGKLKFFDTSRGFGFIEPLDGSEDVFLHANNISGMTSGEDLREGQTIEYETEQTEKGL 60 Query: 63 TAAN 66 +A N Sbjct: 61 SALN 64 >UniRef50_A0Z255 Cold shock protein, CspA family-like protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z255_9GAMM Length = 138 Score = 75.1 bits (184), Expect = 7e-13, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 G +K F+ G GFI+ DG + V VH + G RV + RGP A Sbjct: 75 EGNIKWFNATKGFGFIVGDDGAE-VFVHYRNVEGLTKRSIKQGQRVAYSVRASDRGPQAE 133 Query: 66 NVY 68 V Sbjct: 134 GVK 136 >UniRef50_Q1AWL7 Cold-shock DNA-binding protein family n=2 Tax=cellular organisms RepID=Q1AWL7_RUBXD Length = 197 Score = 75.1 bits (184), Expect = 7e-13, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 S++ G VK FD + G GF++ G +++ VH S A L G+ VE+ RG Sbjct: 131 SQREQGRVKWFDPEKGYGFLVRP-GGEDLFVHHSEVEGD-ASSLGQGVEVEYEVGRNERG 188 Query: 62 PTAANVYL 69 P A V + Sbjct: 189 PNARRVRV 196 >UniRef50_C4K358 RNA chaperone, transcription antiterminator n=3 Tax=Enterobacteriaceae RepID=C4K358_HAMD5 Length = 69 Score = 74.7 bits (183), Expect = 9e-13, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M+ K G VK FD+ +G GFI P DG ++ VH +A + LI G VEF Sbjct: 1 MTLK-KGKVKWFDKIAGYGFISPEDGGLDIYVHKAAIANIKDKSLIAGQDVEFSYRVSFH 59 Query: 61 GPTAANVY 68 GP+A +V Sbjct: 60 GPSAEDVI 67 >UniRef50_D2H5S2 Putative uncharacterized protein (Fragment) n=2 Tax=Caniformia RepID=D2H5S2_AILME Length = 276 Score = 74.3 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 7/69 (10%) Query: 6 TGIVKTFDRKSGKGFII-------PSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNG 58 TG K F+ + G GFI P D +V VH S L G VEF Sbjct: 57 TGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKS 116 Query: 59 LRGPTAANV 67 +G + V Sbjct: 117 SKGLESIRV 125 >UniRef50_B9MXF4 Predicted protein n=2 Tax=Populus trichocarpa RepID=B9MXF4_POPTR Length = 235 Score = 74.3 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPR-DAEVLIPGLRVEFCRVNGLRG 61 + TG V F K G GFI P G K++ VH SA L VEF + Sbjct: 12 ERSTGRVVRFSDKKGFGFIKPDAGDKDLFVHHSAIKSDGGYRTLYEDDVVEFTILLNDDK 71 Query: 62 PTAANV 67 A +V Sbjct: 72 YQAVDV 77 >UniRef50_C8SGB1 Cold-shock DNA-binding domain protein n=4 Tax=Mesorhizobium RepID=C8SGB1_9RHIZ Length = 199 Score = 74.3 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 30/64 (46%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 G VK +D + G GFI P+ G K+ VH +A T L+ G V G +G Sbjct: 135 EGTVKWYDPQKGFGFIAPNKGEKDAFVHATALTRSGISELLEGQMVLVECGQGKKGLEVL 194 Query: 66 NVYL 69 ++ L Sbjct: 195 SIRL 198 Score = 47.3 bits (112), Expect = 2e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 1/60 (1%) Query: 9 VKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANVY 68 V F+ G GF+ DG E + + + G R++ RG V Sbjct: 47 VMWFNAGKGFGFVKLLDG-TEAYLPVRVLEASGTRDVCEGTRLKVTIEERPRGHQVTKVR 105 >UniRef50_Q9EZJ7 Cold shock-like protein CspE (Fragment) n=1 Tax=Brucella abortus RepID=Q9EZJ7_BRUAB Length = 121 Score = 73.9 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGR-KEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 S K++G +K FD G GFI+P ++ +H+++ + + G R+ +G R Sbjct: 23 SLKVSGHIKWFDVAKGYGFIVPDQPGLTDILLHVTSLRRDGFQTALEGARIVCEVRHGDR 82 Query: 61 GPTAANV 67 G V Sbjct: 83 GLQCFRV 89 >UniRef50_D0LBW3 Cold-shock protein DNA-binding protein n=2 Tax=Corynebacterineae RepID=D0LBW3_GORB4 Length = 164 Score = 73.5 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 ++G V +D G GF+ P G +V +HI+ + L PG +V F RG A Sbjct: 7 VSGKVVHYDTNRGFGFLAPESGGADVFLHINDIDIDE-SSLKPGAKVSFDVEETDRGAKA 65 Query: 65 ANVYLS 70 NV ++ Sbjct: 66 VNVAVT 71 >UniRef50_Q1QLF4 Cold-shock DNA-binding protein family n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QLF4_NITHX Length = 68 Score = 73.5 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG-P 62 TG VK F+ + G GFI P DG ++ +H+ P RVE+ G G Sbjct: 1 MQTGSVKFFNAEKGYGFIQPDDGTPDIFLHVHGLA-DKLRYPCPRDRVEYEVGKGPDGRL 59 Query: 63 TAANVYL 69 A V L Sbjct: 60 RAERVAL 66 >UniRef50_Q803L0 Protein lin-28 homolog A n=13 Tax=Euteleostomi RepID=LN28A_DANRE Length = 202 Score = 73.5 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 7/69 (10%) Query: 6 TGIVKTFDRKSGKGFIIPS-------DGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNG 58 +G+ K F+ + G GF+ + D +V VH S L G VEF Sbjct: 35 SGVCKWFNVRMGFGFLSMTHREGICLDSPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKRS 94 Query: 59 LRGPTAANV 67 +G + V Sbjct: 95 SKGLESLQV 103 >UniRef50_Q127M7 Cold-shock DNA-binding protein family n=2 Tax=Betaproteobacteria RepID=Q127M7_POLSJ Length = 193 Score = 73.5 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 ++ + G +K ++ + G GFI+ G +E+ VHISAF + G + F Sbjct: 4 LTMRFDGTLKKWNAERGLGFIVADQGGQEIFVHISAFPRDG-RLPAVGEPLSFEVEPDRD 62 Query: 61 GPTAANVYL 69 G A V + Sbjct: 63 GKKCA-VRI 70 >UniRef50_A8NIV0 'Cold-shock' DNA-binding domain containing protein n=1 Tax=Brugia malayi RepID=A8NIV0_BRUMA Length = 244 Score = 73.5 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 6/69 (8%) Query: 5 MTGIVKTFDRKSGKGFIIPSDG-RKEVQVHISAFTPRD-----AEVLIPGLRVEFCRVNG 58 + G VK + + GFI D +V VH +A L G V F V G Sbjct: 6 VKGKVKWYSVRYHYGFIARDDNKGNDVFVHQTAIAKSRIIKYYLRTLGDGEEVLFDIVQG 65 Query: 59 LRGPTAANV 67 +GP AANV Sbjct: 66 KQGPEAANV 74 >UniRef50_A9AXX4 Cold-shock DNA-binding domain protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AXX4_HERA2 Length = 197 Score = 73.1 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M+ + TG V FD + GFI G + VH A L+ G V F V G++ Sbjct: 1 MNERSTGTVAWFDPEKSYGFITTHAG-ASLFVHRRAL-GDGRRWLVEGEEVSFVVVRGMK 58 Query: 61 GPTAANVYLS 70 G A +V ++ Sbjct: 59 GDEANDVLVT 68 >UniRef50_A0M1Q5 Cold shock-like protein n=13 Tax=Bacteria RepID=A0M1Q5_GRAFK Length = 64 Score = 73.1 bits (179), Expect = 2e-12, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 G VK F+ G GFI D +++ VH S + RV+F G +G Sbjct: 1 MQEGKVKFFNNTKGFGFIKADDSNEDIFVHSSGLIDE----IREDDRVQFEVEQGKKGLN 56 Query: 64 AANVYL 69 A NV + Sbjct: 57 AVNVEV 62 >UniRef50_Q2NK56 Cold shock protein n=6 Tax=Bacteria RepID=Q2NK56_AYWBP Length = 74 Score = 73.1 bits (179), Expect = 3e-12, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPR--DAEVLIPGLRVEFCRVNGLR 60 +K G + F + G GFII +DG K++ VH S+ + L +VEF G R Sbjct: 4 KKEQGTCRWFSKDKGYGFIISADG-KDIFVHYSSIQTEVFGRKTLNENDKVEFTVKEGDR 62 Query: 61 GPTAANVYL 69 G A +V + Sbjct: 63 GAQAVDVVV 71 >UniRef50_Q016S2 Putative nucleic acid binding protein (ISS) n=1 Tax=Ostreococcus tauri RepID=Q016S2_OSTTA Length = 125 Score = 73.1 bits (179), Expect = 3e-12, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 6/62 (9%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEV------LIPGLRVEFCR 55 S + G VK F+ G G+I P DG +V VH SA G VEF Sbjct: 8 SARRRGKVKWFNCTKGFGYITPDDGEPDVFVHQSALKMEGFRRTDGRRFATQGDSVEFDV 67 Query: 56 VN 57 + Sbjct: 68 EH 69 >UniRef50_A2SHE7 Cold-shock DNA-binding domain n=2 Tax=Betaproteobacteria RepID=A2SHE7_METPP Length = 203 Score = 72.7 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 ++ G +K+++ + G GFI P G +++ VHI AF P G V F G G Sbjct: 1 MRLDGKLKSWNDERGFGFIDPVHGGQDIFVHIKAF-PSGTGRPTVGQAVTFEVELGPNGK 59 Query: 63 T-AANVY 68 A +V Sbjct: 60 KRARSVQ 66 >UniRef50_A0PKZ5 Cold shock-like protein B CspB n=78 Tax=Actinomycetales RepID=A0PKZ5_MYCUA Length = 184 Score = 72.7 bits (178), Expect = 4e-12, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 2/64 (3%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK +D G GF+ +G ++V V SA P E L G RVEF +G RGP A Sbjct: 53 TGKVKWYDSDKGFGFLSQEEG-EDVYVRSSAL-PAGVEGLKAGQRVEFGIASGRRGPQAL 110 Query: 66 NVYL 69 ++ L Sbjct: 111 SLKL 114 >UniRef50_A6ESQ3 Cold shock protein n=2 Tax=Bacteroidetes RepID=A6ESQ3_9BACT Length = 63 Score = 72.4 bits (177), Expect = 5e-12, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 4/66 (6%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 GIVK F+ G GFI K+ VHIS + G VEF G +G Sbjct: 1 MNKGIVKFFNDSKGFGFITEEGQEKDHFVHISGLIDE----VREGDEVEFELKEGNKGLN 56 Query: 64 AANVYL 69 A NV + Sbjct: 57 AVNVRV 62 >UniRef50_Q9H9Z2 Protein lin-28 homolog A n=33 Tax=Euteleostomi RepID=LN28A_HUMAN Length = 209 Score = 72.4 bits (177), Expect = 5e-12, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 7/68 (10%) Query: 7 GIVKTFDRKSGKGFIIPS-------DGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGL 59 GI K F+ + G GF+ + D +V VH S L G VEF Sbjct: 42 GICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKSA 101 Query: 60 RGPTAANV 67 +G + V Sbjct: 102 KGLESIRV 109 >UniRef50_A8M1B3 Cold-shock DNA-binding domain protein n=2 Tax=Salinispora RepID=A8M1B3_SALAI Length = 138 Score = 72.4 bits (177), Expect = 5e-12, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 G + FD G GFI P G +V VH + F + G+RV + V RG Sbjct: 1 MEKGTIVRFDDVRGYGFIAPFGGGDDVFVHANDF-GDQRHAVAAGMRVSYEVVQSERGLK 59 Query: 64 AANVYL 69 A+V L Sbjct: 60 VASVVL 65 >UniRef50_Q6ALH9 Hypothetical cold-shock protein n=1 Tax=Desulfotalea psychrophila RepID=Q6ALH9_DESPS Length = 204 Score = 72.0 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG-PTAA 65 G +K ++ + G GFI P +G +V +HI AF R G + + +G +G A Sbjct: 4 GTIKHWNDEKGYGFITPDNGGNDVFLHIKAFKKRPHR-PEIGQVISYGTTSGDKGRLRAC 62 Query: 66 NVY 68 NV Sbjct: 63 NVQ 65 >UniRef50_A0R441 'Cold-shock' DNA-binding domain protein n=18 Tax=Actinomycetales RepID=A0R441_MYCS2 Length = 149 Score = 72.0 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 2/64 (3%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG VK +D + G GF+ DG ++V V SA P E L G RVEF G RGP A Sbjct: 16 TGKVKWYDAEKGFGFLSQEDG-EDVYVRSSAL-PAGVEALKSGQRVEFGVAAGRRGPQAL 73 Query: 66 NVYL 69 ++ L Sbjct: 74 SLKL 77 >UniRef50_A1B0C7 Cold-shock DNA-binding protein family n=28 Tax=Rhodobacterales RepID=A1B0C7_PARDP Length = 197 Score = 72.0 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 27/65 (41%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 RK+ G+VK FD G GF+ DG ++ +H + + G V RG Sbjct: 9 RKIAGVVKWFDGSKGFGFLTDPDGGADILLHANVLRNFGQSSVAEGSHVIAIIQKTPRGM 68 Query: 63 TAANV 67 A V Sbjct: 69 QAVEV 73 Score = 62.0 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 25/60 (41%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANV 67 VK FD+ G GF + +V +H+ L G + V+G RG AA + Sbjct: 107 RVKWFDKAKGFGFANIFADKADVFLHVEVLRHSGFADLAVGEAIALRVVDGRRGMMAAQI 166 >UniRef50_A9ART0 Cold-shock DNA-binding domain protein n=1 Tax=Burkholderia multivorans ATCC 17616 RepID=A9ART0_BURM1 Length = 193 Score = 72.0 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 M G VK F + G GFI + H+S A+ G VEF + RGP A Sbjct: 1 MRGTVKWFSKDKGHGFIYGES-AVDYFFHVSDVV--GADAPREGDIVEFDATSNKRGPRA 57 Query: 65 ANVYL 69 A V + Sbjct: 58 ATVRI 62 >UniRef50_A5VJ42 Cold-shock DNA-binding protein family n=10 Tax=Lactobacillus RepID=A5VJ42_LACRD Length = 67 Score = 72.0 bits (176), Expect = 6e-12, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 + G VK+FD + G GFI + + VH S +L P V V G +GP Sbjct: 1 MLKGKVKSFDEQKGWGFITVPHEGE-IFVHYSGIEGTRRRILHPDEEVSLVIVQGQKGPQ 59 Query: 64 AANVYL 69 AA+V + Sbjct: 60 AAHVRV 65 >UniRef50_B9T6B7 Cold shock protein, putative n=1 Tax=Ricinus communis RepID=B9T6B7_RICCO Length = 257 Score = 72.0 bits (176), Expect = 6e-12, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG- 61 ++ GI+ + + G GFI P+ G +V VH S+ L G+ +E+ + G Sbjct: 108 KRARGILIWYSNEKGYGFIKPNGGGVDVFVHSSSLKSNGHIHLGAGMPLEYETIISNAGK 167 Query: 62 PTAANV 67 A NV Sbjct: 168 LQAINV 173 >UniRef50_B2IBA0 Cold-shock DNA-binding domain protein n=2 Tax=Rhizobiales RepID=B2IBA0_BEII9 Length = 205 Score = 71.6 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANV 67 VK F+R G GF+ DG +++ VH+ +L PG + G +G A V Sbjct: 135 KVKWFNRVKGFGFLSRGDGTEDIFVHMEILRRHGISILHPGEELRARFGQGPKGLIAIEV 194 Query: 68 Y 68 Sbjct: 195 R 195 Score = 66.6 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 +++G +K FD G GF++ +G +V +H++A G RV + G +G Sbjct: 32 EISGRIKWFDLVKGYGFVVADNGLGDVLLHVTALRKDGHSKACEGARVVCEAMRGTKGWQ 91 Query: 64 AANVY 68 V Sbjct: 92 VFRVI 96 >UniRef50_Q607Y7 Cold-shock DNA-binding domain protein n=1 Tax=Methylococcus capsulatus RepID=Q607Y7_METCA Length = 305 Score = 71.6 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 32/65 (49%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 +++G V +F + G GFI P +G H+S T +A + GLR+ F +G Sbjct: 236 EISGTVLSFFHEKGFGFITPDNGGDNFFFHVSDLTGIEASDVCAGLRISFNAGRNDKGLA 295 Query: 64 AANVY 68 A N+ Sbjct: 296 AHNIR 300 >UniRef50_C0CRT9 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CRT9_9FIRM Length = 77 Score = 71.6 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG 61 + G VK FD G GFI +G++ VH S R L G RV + +G Sbjct: 10 ATVEHGTVKWFDPVKGYGFIAGDNGKET-FVHQSDILMRGFRHLETGERVSYRVKATEKG 68 Query: 62 PTAANVY 68 A +V Sbjct: 69 DKAIDVI 75 >UniRef50_B7RPT8 Cold shock protein n=1 Tax=Roseobacter sp. GAI101 RepID=B7RPT8_9RHOB Length = 182 Score = 71.6 bits (175), Expect = 8e-12, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAA 65 TG+VK FD G GF++ +G ++ +H++ + G R+E RG A Sbjct: 12 TGLVKWFDPAKGFGFVVSDEGGPDILLHVNVLRNYGQSSVADGARIELTAHETQRGVQAT 71 Query: 66 NVY 68 V+ Sbjct: 72 QVH 74 Score = 63.9 bits (155), Expect = 2e-09, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 25/61 (40%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANV 67 VK FD+ G GF ++ +HI L PG + + G RG AA V Sbjct: 107 RVKWFDKSKGFGFANVFGRSDDIFLHIEVLRQSGLSDLQPGEALALRVIMGERGHMAAEV 166 Query: 68 Y 68 + Sbjct: 167 H 167 >UniRef50_Q12K82 Putative uncharacterized protein n=1 Tax=Shewanella denitrificans OS217 RepID=Q12K82_SHEDO Length = 196 Score = 71.6 bits (175), Expect = 8e-12, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG- 61 ++ G + +D G GFI P+ EV +HISA + + V +G Sbjct: 1 MRVKGKLVRWDDDKGFGFIRPNLTGPEVFLHISALRNAS-RRPQEDDVITYALVADKQGR 59 Query: 62 PTAANVYLS 70 PTAAN L+ Sbjct: 60 PTAANATLT 68 >UniRef50_A4VQF2 Cold-shock DNA-binding domain protein n=12 Tax=Bacteria RepID=A4VQF2_PSEU5 Length = 235 Score = 71.2 bits (174), Expect = 9e-12, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG-PTA 64 G +K+++ G GFI P G +E+ VHISA + G RV F +G A Sbjct: 4 RGTLKSWNDDKGFGFIRPEQGGEELFVHISAV--HGERRPLVGGRVLFVAGRDAQGRLRA 61 Query: 65 ANVYL 69 +V L Sbjct: 62 EHVRL 66 >UniRef50_C7LWH7 Cold-shock DNA-binding domain protein n=2 Tax=Proteobacteria RepID=C7LWH7_DESBD Length = 168 Score = 71.2 bits (174), Expect = 9e-12, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 3/67 (4%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVN-GLRG 61 + G + + G GFI P+ G V VHISA G V + N G +G Sbjct: 1 MRFHGEISEWRDDRGFGFITPTGGGTRVFVHISALQKG--RRPRAGEMVTYEVGNSGDKG 58 Query: 62 PTAANVY 68 P A NV Sbjct: 59 PRALNVN 65 >UniRef50_B0VIQ0 Cold-shock domain family protein n=2 Tax=Bacteria RepID=B0VIQ0_9BACT Length = 74 Score = 71.2 bits (174), Expect = 1e-11, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 4/71 (5%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAE---VLIPGLRVEFCRVN 57 M M G VK F++ G GFII D ++ VH + VL V F + Sbjct: 1 MRFNMKGKVKWFNKNKGYGFIITDDNKE-YFVHWKSIVTNSPRELKVLEQDELVTFDLME 59 Query: 58 GLRGPTAANVY 68 +G A N+ Sbjct: 60 TDKGIQAINII 70 >UniRef50_Q5YWN3 Putative cold shock protein n=1 Tax=Nocardia farcinica RepID=Q5YWN3_NOCFA Length = 130 Score = 70.8 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAAN 66 G + +FD G GFI P DG +V VH++ + E L G EF G RGP A N Sbjct: 6 GKLVSFDSSRGFGFIRPEDGGPDVFVHVNDIGLDEDE-LRQGRVFEFDVTEGDRGPKAIN 64 >UniRef50_D2YVD1 Cold shock domain-containing protein n=2 Tax=Vibrio RepID=D2YVD1_VIBMI Length = 183 Score = 70.8 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 M G + + + G GFI D +V VHIS F P+ G VEF N +A Sbjct: 29 MKGKILRWVDERGFGFIKSDDLDGDVFVHISKF-PQGYRRPQVGDHVEFHLANNQPKLSA 87 Query: 65 ANVYL 69 A+ L Sbjct: 88 ASARL 92 >UniRef50_Q042Q8 Cold-shock DNA-binding protein family n=18 Tax=Lactobacillus RepID=Q042Q8_LACGA Length = 69 Score = 70.4 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 24/66 (36%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 G VK FD S GFI V + + L G RV + G +G Sbjct: 1 MRKGTVKQFDSNSAYGFIEDDLTHSSYFVFYKSIKEEGYKKLNVGQRVRYQLAQGKKGLQ 60 Query: 64 AANVYL 69 NVY+ Sbjct: 61 CINVYV 66 >UniRef50_Q0APJ7 Cold-shock DNA-binding protein family n=1 Tax=Maricaulis maris MCS10 RepID=Q0APJ7_MARMM Length = 174 Score = 70.4 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANV 67 +VK FD G GF+ + +V +H + E + PG R+E V G +G AA + Sbjct: 109 VVKWFDALRGYGFVTCDNVEGDVFLHAATLRRAGFEDIQPGDRIEVRCVEGPKGALAAEI 168 Query: 68 YLS 70 ++ Sbjct: 169 KVA 171 Score = 62.7 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 ++ G VK +D G GFI SDG ++ +H S +P ++ V G +G Sbjct: 15 ELEGRVKWYDPARGYGFIDASDGEGDILLHASCLRRFGQGPALPNAKIVCKAVQGDKGRQ 74 Query: 64 AAN 66 A Sbjct: 75 AVE 77 >UniRef50_C5RAK7 Cold shock protein CspA n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RAK7_WEIPA Length = 69 Score = 70.4 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 33/67 (49%), Gaps = 1/67 (1%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 K++G VKT+ G GFI G +V VH SA L G V+ V G+RGP Sbjct: 2 EKISGYVKTWQSDKGFGFIEL-KGEDDVFVHFSAIQTPRVRDLTVGQEVKLVVVQGIRGP 60 Query: 63 TAANVYL 69 AA V + Sbjct: 61 QAAAVEV 67 >UniRef50_C0Z2E8 AT4G38680 protein n=103 Tax=cellular organisms RepID=C0Z2E8_ARATH Length = 204 Score = 70.0 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 21/43 (48%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVL 45 + G VK FD + G GFI P DG ++ VH S+ L Sbjct: 9 ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSL 51 >UniRef50_B3QHW3 Cold-shock DNA-binding domain protein n=92 Tax=Alphaproteobacteria RepID=B3QHW3_RHOPT Length = 235 Score = 70.0 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 32/64 (50%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 +++G++K FD G GF++P +G +V +H++ + G R+ V +G Sbjct: 68 EISGVIKWFDASKGYGFVVPDNGWPDVLLHVTVLRRDGYQTAYEGARIVVECVQRAKGYQ 127 Query: 64 AANV 67 A + Sbjct: 128 AFRI 131 Score = 62.0 bits (150), Expect = 5e-09, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 26/60 (43%) Query: 9 VKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANVY 68 VK F+R G GF+ +G ++ VH+ L PG V G +G AA + Sbjct: 165 VKWFNRLRGFGFLTCGEGTPDIFVHMETLRRYGMTELRPGQYVLVRFGPGSKGMMAAEIQ 224 >UniRef50_A1VD07 Cold-shock DNA-binding protein family n=4 Tax=Desulfovibrio vulgaris RepID=A1VD07_DESVV Length = 201 Score = 70.0 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVN-GLRGPTA 64 G + ++ + G GFI P DG V VHISAF R + G RV + +GP A Sbjct: 27 QGKIAQWNDERGFGFISPDDGSPRVFVHISAFRSRHP-LPEVGERVLYYLGPLSPKGPRA 85 Query: 65 ANVY 68 + V Sbjct: 86 SVVR 89 >UniRef50_Q5P4M3 Probable cold shock family protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P4M3_AZOSE Length = 189 Score = 70.0 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNG-LRG 61 ++ G + ++ G GFI+P DG EV VH+SAF G + F R Sbjct: 1 MRIEGTLGKWNDDRGFGFIVPKDGGPEVFVHVSAFPRDG-RRPQIGEPLSFEIELDKDRK 59 Query: 62 PTAANV 67 A V Sbjct: 60 KRAVGV 65 >UniRef50_Q6PHF1 Calcium regulated heat stable protein 1 n=2 Tax=Euteleostomi RepID=Q6PHF1_DANRE Length = 155 Score = 69.7 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEF---CRVNGLRGP 62 +G+ K F R G GFI PSDG ++ VHIS V + G V + Sbjct: 72 SGVCKCFSRSKGHGFITPSDGGNDIFVHISDI--DGEYVPVEGDEVCYKICSIPPKHEKI 129 Query: 63 TAANVYLS 70 A V ++ Sbjct: 130 QAVEVTIT 137 >UniRef50_D2QU65 Cold-shock DNA-binding domain protein n=23 Tax=Bacteroidetes RepID=D2QU65_9SPHI Length = 68 Score = 69.7 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%) Query: 4 KMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPT 63 TG+VK F+ G GFI+ D +++ VHI+ + RV+F V+G +G Sbjct: 1 MQTGVVKFFNESKGYGFIVEDDTNRDIFVHITGLNGI---TIREKDRVQFEVVDGKKGLN 57 Query: 64 AANVY 68 A V Sbjct: 58 AVKVK 62 >UniRef50_C0WQD2 Possible cold-shock protein n=3 Tax=Lactobacillus RepID=C0WQD2_LACBU Length = 93 Score = 69.3 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 + + G VKT++ K+G GFI G + +AF D ++PG+RV + V G +GP Sbjct: 22 KMLYGKVKTYNAKNGFGFITQDQG-DNLFFFKNAFHGEDYSRIVPGIRVSYVVVEGQKGP 80 Query: 63 TAANVYL 69 AA + Sbjct: 81 QAAKAQI 87 >UniRef50_Q2RNN9 Cold-shock DNA-binding protein family n=2 Tax=Rhodospirillum RepID=Q2RNN9_RHORT Length = 210 Score = 69.3 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 28/68 (41%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M + T VK F+ G GF+ SDG + +HIS L G + G + Sbjct: 1 MLSRSTATVKWFNATKGFGFVRVSDGEPDAFLHISVLQRAGYSELPEGATIVCDLAPGQK 60 Query: 61 GPTAANVY 68 G + +Y Sbjct: 61 GMQVSEIY 68 Score = 65.0 bits (158), Expect = 7e-10, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 28/62 (45%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 ++ G+VK F G GF++P G K+V V VL G RV G +GP Sbjct: 143 TEIDGVVKFFSADKGFGFVVPDGGGKDVYVGSRTLQDCGVSVLEQGQRVRMSIRMGKKGP 202 Query: 63 TA 64 A Sbjct: 203 MA 204 >UniRef50_C6J0U1 Predicted protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J0U1_9BACL Length = 109 Score = 69.3 bits (169), Expect = 4e-11, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 4/69 (5%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG- 61 ++++G V+ + G GFI DG +V HI+A D L G RV F RG Sbjct: 43 KRLSGYVRRYYDDRGFGFIGREDGS-DVHFHINAVQGADK--LRTGDRVTFEIGEDKRGK 99 Query: 62 PTAANVYLS 70 PTA NV L+ Sbjct: 100 PTAKNVRLA 108 >UniRef50_A3X5Q6 Putative uncharacterized protein n=1 Tax=Roseobacter sp. MED193 RepID=A3X5Q6_9RHOB Length = 463 Score = 69.3 bits (169), Expect = 4e-11, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 4/69 (5%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP-- 62 M G +K F G GFI ++V HI+ G V+F R P Sbjct: 1 MQGKIKAFIHDKGFGFIEVDGQSEDVFFHITTVKDSSVRC-AVGEIVDFDAAESKRKPGT 59 Query: 63 -TAANVYLS 70 A NV L+ Sbjct: 60 LEARNVRLA 68 >UniRef50_A0PKE1 DNA-binding protein n=2 Tax=Mycobacterium RepID=A0PKE1_MYCUA Length = 135 Score = 69.3 bits (169), Expect = 4e-11, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 + TG + FD G GFI P G ++V +H + G RV F +G RG Sbjct: 1 MRGTGRIVRFDDVRGYGFIAPDSGGEDVFLHANDLDFDRLLA-KRGTRVSFDIEDGPRGK 59 Query: 63 TAANVYLS 70 A V ++ Sbjct: 60 FATAVLIT 67 >UniRef50_A1TSW1 Cold-shock DNA-binding domain protein n=4 Tax=Acidovorax RepID=A1TSW1_ACIAC Length = 224 Score = 69.3 bits (169), Expect = 4e-11, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 7 GIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG-PTAA 65 G++ +++ G GFI P G V VHI AF G RV F G G A Sbjct: 5 GVIASWNDARGFGFIEPLQGGDPVFVHIKAFQGGAPR-PQAGQRVRFAVEAGPGGRKRAC 63 Query: 66 NV 67 V Sbjct: 64 RV 65 >UniRef50_A9KN41 Cold-shock DNA-binding domain protein n=22 Tax=Firmicutes RepID=A9KN41_CLOPH Length = 70 Score = 68.9 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA-EVLIPGLRVEFCRVNGLRGPT 63 TG VK +D + G GF+ +DGR +V +H S + + + G + F + +GP Sbjct: 4 YTGTVKWYDSERGYGFVSTNDGR-DVFLHHSQIKEKGFDKEVHEGESIGFDIIEQEKGPA 62 Query: 64 AANVY 68 A NV+ Sbjct: 63 AINVH 67 >UniRef50_Q17JD9 Putative uncharacterized protein n=1 Tax=Aedes aegypti RepID=Q17JD9_AEDAE Length = 192 Score = 68.9 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 11/70 (15%) Query: 2 SRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRVN 57 S+++TG VK F+ K G GFI D +++ VH S + + + G VEF Sbjct: 31 SKRITGTVKWFNAKDGFGFITRHDTGEDIFVHKSCIFKPNRNHFTKSIGDGEIVEF---- 86 Query: 58 GLRGPTAANV 67 G A+ V Sbjct: 87 ---GLIASKV 93 >UniRef50_C6XG83 Cold shock protein n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XG83_LIBAP Length = 78 Score = 68.9 bits (168), Expect = 5e-11, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 5/69 (7%) Query: 6 TGIVKTFDRKSGKGFIIPSD---GRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGL--R 60 G +K ++ G GFI P +V +H SA L G V + V Sbjct: 4 RGSIKWYNPDKGYGFITPEGSTESGDDVFLHRSAVASAGLFNLTEGQLVTYDYVQNDANG 63 Query: 61 GPTAANVYL 69 +A N+ L Sbjct: 64 KYSAENLKL 72 >UniRef50_A6C742 Cold-shock DNA-binding domain n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C742_9PLAN Length = 195 Score = 68.9 bits (168), Expect = 5e-11, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGP 62 + G + +D + G GFI + V VHISAF+ A G V + + G Sbjct: 1 MRSQGKITDWDDEKGFGFISSQNDDSSVFVHISAFSG-SARRPQAGDPVSYETAHEENGK 59 Query: 63 -TAANVYLS 70 A NV S Sbjct: 60 VRAENVRFS 68 >UniRef50_Q9Y534 Cold shock domain-containing protein C2 n=38 Tax=Chordata RepID=CSDC2_HUMAN Length = 153 Score = 68.9 bits (168), Expect = 5e-11, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Query: 6 TGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFC---RVNGLRGP 62 G+ K F R G GFI P +G +++ VH+S V + G V + + Sbjct: 70 KGVCKQFSRSQGHGFITPENGSEDIFVHVSDI--EGEYVPVEGDEVTYKMCPIPPKNQKF 127 Query: 63 TAANVYLS 70 A V L+ Sbjct: 128 QAVEVVLT 135 >UniRef50_UPI0001AF6C46 cold-shock DNA-binding protein family protein n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF6C46 Length = 99 Score = 68.9 bits (168), Expect = 5e-11, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 31/69 (44%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 MS G++ FD + G GF+ P+DG ++V + S A + G V + Sbjct: 30 MSTVSYGVINWFDDERGFGFVHPADGDRDVFIDSSEIVDWPAGGVHEGQHVSYQTGGTRH 89 Query: 61 GPTAANVYL 69 P A V++ Sbjct: 90 WPRAQAVHI 98 >UniRef50_Q28PH1 Cold-shock DNA-binding protein family n=11 Tax=Rhodobacterales RepID=Q28PH1_JANSC Length = 181 Score = 68.9 bits (168), Expect = 5e-11, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 26/61 (42%) Query: 8 IVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTAANV 67 VK FD+ G GF ++V VH+ L PG V V+G RG AA V Sbjct: 116 RVKWFDKAKGFGFANVFGHSEDVFVHVEVLRRSGFTELQPGEAVAMKVVDGPRGRMAAEV 175 Query: 68 Y 68 Sbjct: 176 R 176 Score = 65.4 bits (159), Expect = 6e-10, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRGPTA 64 + G+VK FD G GF++ +G ++ +H + + G RV RG A Sbjct: 22 VAGVVKWFDTTKGFGFVLSDEGGPDILLHANVLRSFGRGSIAEGARVMLRTQATGRGLQA 81 Query: 65 ANVY 68 + Sbjct: 82 VEII 85 >UniRef50_A6W4V4 Putative cold-shock DNA-binding domain protein n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W4V4_KINRD Length = 156 Score = 68.9 bits (168), Expect = 5e-11, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 1 MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLR 60 M+ G V++FD G GFI D + V H+ +AE L G V+F G R Sbjct: 1 MASLAKGKVRSFDDGRGFGFITSPDCPENVFFHVKDVVDLEAEDL-EGASVQFTLDQGDR 59 Query: 61 GPTAANVY 68 G A +V Sbjct: 60 GYKATDVR 67 >UniRef50_Q1ZUW9 Predicted membrane protein n=2 Tax=Photobacterium RepID=Q1ZUW9_PHOAS Length = 204 Score = 68.9 bits (168), Expect = 5e-11, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEVLIPGLRVEFCRVNGLRG-PT 63 G + +++++ G GFI P +G ++V H+SA + + FC +G + Sbjct: 3 QQGKIISWNQQKGFGFIAPDNGEQDVFFHVSALPDKQCR-PRINEAITFCIGKDKKGRMS 61 Query: 64 AANVYLS 70 A V + Sbjct: 62 ATTVTFT 68 >UniRef50_B0W4X1 Putative uncharacterized protein n=1 Tax=Culex quinquefasciatus RepID=B0W4X1_CULQU Length = 247 Score = 68.9 bits (168), Expect = 5e-11, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%) Query: 3 RKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRD----AEVLIPGLRVEFCRVNG 58 +++TG VK F+ K G GFI D +++ VH S+ + + G VEF + Sbjct: 50 KRITGTVKWFNVKDGFGFITRHDTGEDLFVHQSSILRPNSRHSVRSVGEGEVVEFGVIAT 109 Query: 59 L 59 Sbjct: 110 K 110 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.320 0.180 0.612 Lambda K H 0.267 0.0549 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 541,731,675 Number of Sequences: 3077464 Number of extensions: 20872032 Number of successful extensions: 44514 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 882 Number of HSP's successfully gapped in prelim test: 228 Number of HSP's that attempted gapping in prelim test: 42796 Number of HSP's gapped (non-prelim): 1339 length of query: 70 length of database: 1,040,396,356 effective HSP length: 42 effective length of query: 28 effective length of database: 911,142,868 effective search space: 25512000304 effective search space used: 25512000304 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 88 (38.1 bits)