BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (99 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_C4LFG7 Integration host factor subunit alpha n=448 Tax=... 168 6e-41 UniRef50_Q12NT8 Integration host factor subunit alpha n=35 Tax=G... 167 1e-40 UniRef50_Q3JBZ6 Integration host factor subunit alpha n=9 Tax=Ba... 154 1e-36 UniRef50_Q2KZM3 Integration host factor subunit alpha n=15 Tax=P... 130 1e-29 UniRef50_A1VR71 Integration host factor subunit alpha n=44 Tax=B... 111 7e-24 UniRef50_Q4FQ67 Integration host factor subunit alpha n=10 Tax=G... 111 7e-24 UniRef50_C4K783 Integration host factor (IHF), DNA-binding prote... 108 4e-23 UniRef50_Q1D6D8 Integration host factor subunit alpha n=24 Tax=D... 105 3e-22 UniRef50_B1A4K2 Integration host factor subunit A-like protein n... 105 6e-22 UniRef50_D2LEN1 Integration host factor, alpha subunit n=1 Tax=R... 102 3e-21 UniRef50_Q39VS3 Histone-like DNA-binding protein n=5 Tax=Deltapr... 102 3e-21 UniRef50_Q8UG61 Integration host factor subunit alpha n=29 Tax=A... 100 2e-20 UniRef50_B2S525 Integration host factor subunit alpha n=48 Tax=A... 100 2e-20 UniRef50_Q5LQJ4 Integration host factor subunit alpha n=14 Tax=A... 100 2e-20 UniRef50_A8LLT5 Integration host factor subunit alpha n=28 Tax=A... 98 7e-20 UniRef50_Q2IWQ7 Integration host factor subunit alpha n=17 Tax=R... 96 3e-19 UniRef50_A4YW83 Integration host factor subunit alpha n=41 Tax=A... 96 5e-19 UniRef50_B9JPN0 Integration host factor alpha-subunit protein n=... 94 2e-18 UniRef50_B8FAQ7 Histone family protein DNA-binding protein n=6 T... 92 7e-18 UniRef50_A5CWF3 Integration host factor, alpha subunit n=2 Tax=s... 90 2e-17 UniRef50_A4MZU5 Integration host factor alpha-subunit n=1 Tax=Ha... 89 4e-17 UniRef50_C8QX16 Histone family protein DNA-binding protein n=1 T... 89 6e-17 UniRef50_B5YLD8 Integration host factor alpha-subunit n=1 Tax=Th... 87 2e-16 UniRef50_C6XIY2 Histone family protein DNA-binding protein n=1 T... 87 2e-16 UniRef50_Q6ANC3 Related to integration host factor, alpha subuni... 85 6e-16 UniRef50_B7JAF9 Integration host factor, alpha subunit, putative... 85 7e-16 UniRef50_C1SGM2 Bacterial nucleoid DNA-binding protein n=1 Tax=D... 84 2e-15 UniRef50_D0RNW1 Integration host factor subunit alpha (IHF-alpha... 83 3e-15 UniRef50_P08821 DNA-binding protein HU 1 n=13 Tax=Bacteria RepID... 82 4e-15 UniRef50_Q6AJG8 Probable integration host factor, alpha-subunit ... 82 7e-15 UniRef50_C0QI67 IhfA n=1 Tax=Desulfobacterium autotrophicum HRM2... 80 2e-14 UniRef50_B1I182 Histone family protein DNA-binding protein n=66 ... 79 3e-14 UniRef50_A3JHV4 Integration host factor subunit alpha n=1 Tax=Ma... 79 5e-14 UniRef50_B2IE05 Histone family protein DNA-binding protein n=2 T... 78 7e-14 UniRef50_Q9K7K5 DNA-binding protein HU-1 n=51 Tax=root RepID=DBH... 78 7e-14 UniRef50_Q9KDA5 DNA-binding protein HU-1 n=10 Tax=Bacteria RepID... 77 2e-13 UniRef50_P68573 SPBc2 prophage-derived DNA-binding protein HU 2 ... 76 3e-13 UniRef50_C3KW90 DNA-binding protein HU n=13 Tax=Bacteria RepID=C... 75 5e-13 UniRef50_Q5ZUE2 HupB DNA binding protein HU-beta n=19 Tax=Bacter... 75 6e-13 UniRef50_Q5HFV0 DNA-binding protein HU n=74 Tax=Bacteria RepID=D... 75 6e-13 UniRef50_B3EBV2 Histone family protein DNA-binding protein n=3 T... 75 7e-13 UniRef50_C8QYJ3 Histone family protein DNA-binding protein n=1 T... 75 9e-13 UniRef50_A0L712 Histone family protein DNA-binding protein n=5 T... 75 9e-13 UniRef50_Q87E48 DNA-binding protein HU n=403 Tax=cellular organi... 74 1e-12 UniRef50_C9KMW2 DNA-binding protein HU n=1 Tax=Mitsuokella multa... 74 1e-12 UniRef50_A6BAU5 DNA-binding protein HU n=1 Tax=Vibrio parahaemol... 74 1e-12 UniRef50_P19436 DNA-binding protein HU n=117 Tax=root RepID=DBH_... 74 2e-12 UniRef50_Q8SME4 DNA-binding protein Hu homolog n=1 Tax=Cyanidios... 73 3e-12 UniRef50_A1VFK7 Histone family protein DNA-binding protein n=3 T... 73 3e-12 UniRef50_B4S407 Histone family protein DNA-binding protein n=14 ... 73 3e-12 UniRef50_Q9JR30 DNA-binding protein HU-beta 2 n=24 Tax=Bacteria ... 72 5e-12 UniRef50_B2ICU5 Histone family protein DNA-binding protein n=2 T... 72 6e-12 UniRef50_A1WUI6 Integration host factor subunit beta n=9 Tax=cel... 72 6e-12 UniRef50_A3EV93 Putative integration host factor, alpha subunit ... 71 9e-12 UniRef50_A8PMN2 Integration host factor subunit alpha (IHF-alpha... 71 1e-11 UniRef50_Q5GRX5 Bacterial nucleoid DNA-binding protein, HupA fam... 71 1e-11 UniRef50_P05385 DNA-binding protein HU n=38 Tax=Bacteria RepID=D... 71 1e-11 UniRef50_Q9XB22 DNA-binding protein HU n=33 Tax=Firmicutes RepID... 71 1e-11 UniRef50_A0L640 HU family DNA-binding protein n=19 Tax=root RepI... 71 1e-11 UniRef50_A6LB49 DNA-binding protein HU-beta n=5 Tax=Bacteroidale... 71 1e-11 UniRef50_Q2S2T0 DNA-binding protein HU n=1 Tax=Salinibacter rube... 70 1e-11 UniRef50_Q01YK4 Histone family protein DNA-binding protein n=1 T... 70 1e-11 UniRef50_Q1D6M8 Integration host factor, beta subunit n=3 Tax=Pr... 70 2e-11 UniRef50_C4K4H0 DNA-binding protein HU-alpha (HU-2) n=2 Tax=Cand... 70 2e-11 UniRef50_Q58KH1 ORF98 n=3 Tax=Leptospirillum RepID=Q58KH1_9BACT 69 3e-11 UniRef50_Q0AZ79 Bacterial nucleoid protein Hbs n=15 Tax=Bacteria... 69 3e-11 UniRef50_P02348 DNA-binding protein HRL53 n=11 Tax=Proteobacteri... 69 5e-11 UniRef50_A7H8A7 Histone family protein DNA-binding protein n=6 T... 69 6e-11 UniRef50_C0QI36 IhfB n=3 Tax=Deltaproteobacteria RepID=C0QI36_DESAH 68 8e-11 UniRef50_C0GE87 Histone family protein DNA-binding protein n=1 T... 68 8e-11 UniRef50_C6HZV1 Putative integration host factor, alpha subunit ... 68 9e-11 UniRef50_A7HPD7 Integration host factor subunit beta n=42 Tax=Pr... 68 1e-10 UniRef50_Q01W44 Histone family protein DNA-binding protein n=3 T... 68 1e-10 UniRef50_Q0C4A3 DNA-binding protein HU n=3 Tax=Hyphomonadaceae R... 68 1e-10 UniRef50_B0VJA9 DNA-binding protein HU (DNA-binding protein II) ... 67 1e-10 UniRef50_Q2W3I2 Bacterial nucleoid DNA-binding protein n=6 Tax=B... 67 1e-10 UniRef50_P0A128 Integration host factor subunit beta n=99 Tax=Pr... 67 2e-10 UniRef50_A4SLS6 Integration host factor subunit beta n=17 Tax=Ga... 67 2e-10 UniRef50_B8GRS4 Integration host factor subunit beta n=17 Tax=Ba... 67 2e-10 UniRef50_A6CAS4 Probable DNA-binding protein HU n=2 Tax=Planctom... 67 2e-10 UniRef50_A5CWG6 DNA-binding protein HU-beta n=5 Tax=Bacteria Rep... 67 3e-10 UniRef50_A5VG36 Histone family protein DNA-binding protein n=2 T... 66 3e-10 UniRef50_C6XF17 Integration host factor subunit alpha n=1 Tax=Ca... 66 3e-10 UniRef50_Q65SH8 Integration host factor subunit beta n=19 Tax=Pr... 66 3e-10 UniRef50_C1A906 DNA-binding protein n=1 Tax=Gemmatimonas auranti... 66 3e-10 UniRef50_Q2J6X1 Histone-like DNA-binding protein n=4 Tax=Frankia... 66 4e-10 UniRef50_B2RHA9 DNA-binding protein HU n=2 Tax=Porphyromonas gin... 66 4e-10 UniRef50_A6W7Q9 Histone family protein DNA-binding protein n=1 T... 66 4e-10 UniRef50_A1AW42 Histone family protein DNA-binding protein n=4 T... 66 4e-10 UniRef50_Q5P3H7 DNA-binding protein hu-alpha n=3 Tax=Bacteria Re... 65 4e-10 UniRef50_Q9LA96 DNA-binding protein HU-alpha n=610 Tax=cellular ... 65 5e-10 UniRef50_A5CCR4 Histone-like DNA-binding protein HU n=2 Tax=Orie... 65 5e-10 UniRef50_A5EU64 Histone-like DNA-binding protein n=33 Tax=cellul... 65 6e-10 UniRef50_C3M8C0 DNA-binding protein n=1 Tax=Candidatus Hamiltone... 65 6e-10 UniRef50_C8PNN7 DNA-binding protein, HU family n=1 Tax=Treponema... 65 6e-10 UniRef50_A6Q378 DNA-binding protein HU n=4 Tax=Epsilonproteobact... 65 7e-10 UniRef50_A7AXT3 Putative uncharacterized protein n=1 Tax=Ruminoc... 65 7e-10 UniRef50_O83278 DNA-binding protein HU n=2 Tax=Treponema pallidu... 65 8e-10 UniRef50_C7Q397 Histone family protein DNA-binding protein n=1 T... 65 8e-10 UniRef50_B6JCN9 Integration host factor subunit beta n=51 Tax=Al... 65 8e-10 UniRef50_Q9ZF89 DNA-binding protein HU-alpha n=51 Tax=Bacteria R... 65 9e-10 UniRef50_D1CFB6 Histone family protein DNA-binding protein n=1 T... 65 9e-10 UniRef50_A4X4D0 Histone family protein DNA-binding protein n=24 ... 65 9e-10 UniRef50_C3JSK6 DNA-binding protein (Fragment) n=1 Tax=Rhodococc... 65 9e-10 UniRef50_Q89B22 DNA-binding protein HU n=16 Tax=Bacteria RepID=D... 65 9e-10 UniRef50_B8GX11 DNA-binding protein HU n=6 Tax=Caulobacteraceae ... 65 1e-09 UniRef50_C7M6F9 Histone family protein DNA-binding protein n=11 ... 64 1e-09 UniRef50_A4JQB1 Histone family protein DNA-binding protein n=4 T... 64 1e-09 UniRef50_UPI0001693F3B DNA-binding protein HU n=1 Tax=Paenibacil... 64 1e-09 UniRef50_Q12ND8 Integration host factor subunit beta n=185 Tax=G... 64 1e-09 UniRef50_A3ER44 Putative integration host factor, beta-subunit n... 64 1e-09 UniRef50_P43722 DNA-binding protein HU n=26 Tax=Bacteria RepID=D... 64 1e-09 UniRef50_B7CAU3 Putative uncharacterized protein n=1 Tax=Eubacte... 64 2e-09 UniRef50_Q9XB18 DNA-binding protein HU homolog n=36 Tax=Actinomy... 64 2e-09 UniRef50_Q7WX14 Putative histone-like protein n=2 Tax=Proteobact... 64 2e-09 UniRef50_C4XGD8 HU_IHF family transcriptional regulator n=2 Tax=... 64 2e-09 UniRef50_B9K3N0 HNS-type DNA binding protein n=11 Tax=Alphaprote... 64 2e-09 UniRef50_B0KQB3 Histone family protein DNA-binding protein n=14 ... 64 2e-09 UniRef50_C1DAY8 HupB1 n=3 Tax=cellular organisms RepID=C1DAY8_LARHH 64 2e-09 UniRef50_Q5HUP6 DNA-binding protein HU n=32 Tax=Campylobacterace... 64 2e-09 UniRef50_Q9ZHC5 DNA-binding protein HU homolog n=31 Tax=Bacteria... 63 2e-09 UniRef50_C0RGK7 Integration host factor subunit beta n=44 Tax=Al... 63 2e-09 UniRef50_Q2SRR9 DNA-binding protein HU 1 n=5 Tax=Mollicutes RepI... 63 2e-09 UniRef50_A3VQA5 Integration host factor subunit beta n=1 Tax=Par... 63 2e-09 UniRef50_C5B6T6 Integration host factor (IHF) like DNA-binding p... 63 2e-09 UniRef50_A9IJJ1 Integration host factor subunit beta n=23 Tax=Pr... 63 2e-09 UniRef50_B8DRW9 Histone family protein DNA-binding protein n=11 ... 63 3e-09 UniRef50_Q7WDC5 Histone-like DNA-binding protein n=1 Tax=Bordete... 63 3e-09 UniRef50_D2QWH5 Histone family protein DNA-binding protein n=1 T... 63 3e-09 UniRef50_C1ZKD3 Bacterial nucleoid DNA-binding protein n=2 Tax=P... 63 3e-09 UniRef50_A4A2Z0 Probable DNA-binding protein HU n=1 Tax=Blastopi... 63 3e-09 UniRef50_A4G858 Integration host factor subunit beta n=15 Tax=Pr... 63 3e-09 UniRef50_C8XUL7 Putative DNA-binding protein n=1 Tax=Shigella ph... 63 3e-09 UniRef50_Q9HTL0 DNA-binding protein HU-alpha n=33 Tax=Bacteria R... 63 3e-09 UniRef50_B6IUP4 Integration host factor subunit beta n=22 Tax=Pr... 63 4e-09 UniRef50_A6TJN4 Histone family protein DNA-binding protein n=11 ... 62 4e-09 UniRef50_Q2LW81 DNA-binding protein HU n=2 Tax=Proteobacteria Re... 62 4e-09 UniRef50_C4XHM4 HU_IHF family transcriptional regulator n=1 Tax=... 62 4e-09 UniRef50_B9LTH2 Histone family protein DNA-binding protein n=17 ... 62 4e-09 UniRef50_C3WGU4 DNA-binding protein HU n=13 Tax=Fusobacterium Re... 62 4e-09 UniRef50_B2AK36 HU, DNA-binding transcriptional regulator, beta ... 62 4e-09 UniRef50_Q0AIZ2 Integration host factor subunit beta n=53 Tax=Pr... 62 5e-09 UniRef50_Q2W5P8 Bacterial nucleoid DNA-binding protein n=9 Tax=A... 62 5e-09 UniRef50_D1RMX6 DNA-binding protein HU-beta n=1 Tax=Legionella l... 62 5e-09 UniRef50_UPI0001BC7A84 putative histone-like DNA-binding protein... 62 7e-09 UniRef50_A1S612 DNA-binding protein, HU family n=2 Tax=Shewanell... 62 8e-09 UniRef50_C0QR54 Histone family protein DNA-binding protein n=1 T... 62 8e-09 UniRef50_Q121G1 Histone-like DNA-binding protein n=12 Tax=Bacter... 61 8e-09 UniRef50_B1XSK3 Histone family protein DNA-binding protein n=18 ... 61 9e-09 UniRef50_B8H6A5 Integration host factor subunit beta n=10 Tax=ce... 61 1e-08 UniRef50_P0A3H3 DNA-binding protein HRL18 n=59 Tax=cellular orga... 61 1e-08 UniRef50_Q4FLU7 Bacterial DNA-binding protein n=3 Tax=Candidatus... 61 1e-08 UniRef50_Q3J6Y8 Histone-like DNA-binding protein n=2 Tax=Nitroso... 61 1e-08 UniRef50_B3R809 DNA-binding protein HU-beta, NS1 (HU-1), plays a... 61 1e-08 UniRef50_Q3A4K6 BHL, histone-like protein n=10 Tax=Deltaproteoba... 60 1e-08 UniRef50_B1Y0T8 Histone family protein DNA-binding protein n=6 T... 60 2e-08 UniRef50_UPI0001BCAEAF DNA-binding protein HU-beta, NS1(HU-1) n=... 60 2e-08 UniRef50_C1D9R2 HupB2 n=1 Tax=Laribacter hongkongensis HLHK9 Rep... 60 2e-08 UniRef50_A0LI64 Histone family protein DNA-binding protein n=6 T... 60 2e-08 UniRef50_A0LVA1 Histone family protein DNA-binding protein n=42 ... 60 2e-08 UniRef50_Q1DCD2 DNA-binding protein HU n=2 Tax=Cystobacterineae ... 60 2e-08 UniRef50_A9AXB4 Histone family protein DNA-binding protein n=3 T... 60 2e-08 UniRef50_C5BJS4 DNA-binding protein HU n=1 Tax=Teredinibacter tu... 60 2e-08 UniRef50_Q9XB20 DNA-binding protein HU n=65 Tax=Bacteria RepID=D... 60 2e-08 UniRef50_A4WS11 Histone family protein DNA-binding protein n=1 T... 60 2e-08 UniRef50_Q46Y54 Integration host factor subunit beta n=47 Tax=Pr... 60 3e-08 UniRef50_Q2SY23 Integration host factor subunit beta n=94 Tax=Pr... 60 3e-08 UniRef50_Q6KHG3 Bacterial nucleoid DNA-binding protein HU n=2 Ta... 60 3e-08 UniRef50_B5YH73 DNA-binding protein HU 1 n=1 Tax=Thermodesulfovi... 60 3e-08 UniRef50_Q0BZC9 DNA-binding protein HU n=1 Tax=Hyphomonas neptun... 59 3e-08 UniRef50_A6LHR2 DNA-binding protein HU-beta n=3 Tax=Bacteroidale... 59 4e-08 UniRef50_P73418 DNA-binding protein HU n=21 Tax=Cyanobacteria Re... 59 4e-08 UniRef50_Q1V2L3 Non-specific DNA-binding protein HBsu n=6 Tax=ro... 59 4e-08 UniRef50_Q30VZ6 Histone-like DNA-binding protein n=1 Tax=Desulfo... 59 4e-08 UniRef50_Q92J57 DNA-binding protein HU n=10 Tax=spotted fever gr... 59 5e-08 UniRef50_D2LFF2 Histone family protein DNA-binding protein n=1 T... 59 5e-08 UniRef50_C5B569 Putative integration host factor n=1 Tax=Methylo... 59 6e-08 UniRef50_P0A3I2 Integration host factor subunit beta n=3 Tax=Agr... 59 6e-08 UniRef50_B6KEZ7 DNA-binding protein HU, putative n=3 Tax=Toxopla... 59 6e-08 UniRef50_C0QP77 DNA-binding protein HU 1 (DNA-binding protein II... 59 6e-08 UniRef50_C2M9J7 DNA-binding protein HU n=1 Tax=Porphyromonas uen... 58 7e-08 UniRef50_P29214 DNA-binding protein HU homolog n=6 Tax=cellular ... 58 7e-08 UniRef50_C6HU01 Histone family protein DNA-binding protein n=3 T... 58 8e-08 UniRef50_C6JIB7 Predicted protein n=2 Tax=Fusobacterium RepID=C6... 58 9e-08 UniRef50_A5CZA3 Bacterial nucleoid DNA-binding protein n=1 Tax=P... 58 9e-08 UniRef50_Q1RHD4 DNA-binding protein HU n=5 Tax=Rickettsia RepID=... 58 9e-08 UniRef50_Q92GN5 Histone-like DNA-binding protein n=9 Tax=spotted... 58 1e-07 UniRef50_B9XJ11 Histone family protein DNA-binding protein n=1 T... 58 1e-07 UniRef50_Q9KHS6 DNA-binding protein HU-beta n=61 Tax=Bacteria Re... 58 1e-07 UniRef50_C6IB23 HU family DNA-binding protein n=6 Tax=Bacteroide... 58 1e-07 UniRef50_A3VSB6 DNA-binding protein HU n=1 Tax=Parvularcula berm... 57 1e-07 UniRef50_A6U5F1 Integration host factor subunit beta n=23 Tax=Al... 57 1e-07 UniRef50_B1Y4B9 Histone family protein DNA-binding protein n=6 T... 57 1e-07 UniRef50_Q0AI99 Histone family protein DNA-binding protein n=42 ... 57 1e-07 UniRef50_C8X523 Histone family protein DNA-binding protein n=2 T... 57 1e-07 UniRef50_B7AFK0 Putative uncharacterized protein n=1 Tax=Bactero... 57 1e-07 UniRef50_C7XFY9 Integration host factor, alpha subunit n=2 Tax=B... 57 2e-07 UniRef50_C3CT70 DNA-binding protein HU n=1 Tax=Bacillus thuringi... 57 2e-07 UniRef50_Q3SRD9 Histone-like DNA-binding protein n=6 Tax=Bacteri... 57 2e-07 UniRef50_Q9RZ89 DNA-binding protein HU n=2 Tax=Deinococcus RepID... 57 2e-07 UniRef50_A3EUM1 Putative histone-like DNA-binding protein n=2 Ta... 57 2e-07 UniRef50_Q3IKW5 DNA-binding protein HU-alpha (HU-2), likely to p... 57 2e-07 UniRef50_O67461 DNA-binding protein HU n=3 Tax=Aquificaceae RepI... 57 2e-07 UniRef50_A5ZCF1 Putative uncharacterized protein n=2 Tax=Bactero... 57 2e-07 UniRef50_Q2NIZ7 DNA-binding protein HU n=3 Tax=Candidatus Phytop... 57 3e-07 UniRef50_C9RMP4 Histone family protein DNA-binding protein n=1 T... 57 3e-07 UniRef50_Q6MC07 Putative integration host factor n=2 Tax=Parachl... 57 3e-07 UniRef50_Q1Q201 Putative uncharacterized protein n=1 Tax=Candida... 57 3e-07 UniRef50_Q2GIK3 Integration host factor, alpha subunit n=9 Tax=A... 56 4e-07 UniRef50_Q57267 DNA-binding protein HU n=41 Tax=Borrelia RepID=D... 56 4e-07 UniRef50_B3R0E2 Bacterial nucleoid DNA-binding protein n=1 Tax=C... 55 5e-07 UniRef50_C6IG13 Putative uncharacterized protein n=8 Tax=Bactero... 55 5e-07 UniRef50_B6WST8 Putative uncharacterized protein n=1 Tax=Desulfo... 55 5e-07 UniRef50_UPI0001969776 hypothetical protein BACCELL_04916 n=1 Ta... 55 5e-07 UniRef50_B0S0H5 DNA binding protein n=12 Tax=Bacteria RepID=B0S0... 55 6e-07 UniRef50_B8DML6 Histone family protein DNA-binding protein n=5 T... 55 6e-07 UniRef50_A1AWN5 Histone family protein DNA-binding protein n=3 T... 55 6e-07 UniRef50_C9M6K0 DNA-binding protein HU n=2 Tax=Synergistaceae Re... 55 7e-07 UniRef50_C4K6F1 HU, DNA-binding transcriptional regulator, alpha... 55 7e-07 UniRef50_B4UEN5 Histone family protein DNA-binding protein n=3 T... 55 7e-07 UniRef50_B3C8S3 Putative uncharacterized protein n=1 Tax=Bactero... 55 7e-07 UniRef50_A6L5T8 DNA-binding protein HU n=2 Tax=Bacteroidales Rep... 55 9e-07 UniRef50_UPI0001699D1F integration host factor, beta subunit n=1... 55 9e-07 UniRef50_B5ERD0 Histone family protein DNA-binding protein n=2 T... 54 1e-06 UniRef50_A1AQ83 Histone family protein DNA-binding protein n=1 T... 54 1e-06 UniRef50_Q7NFI0 Gll3545 protein n=1 Tax=Gloeobacter violaceus Re... 54 1e-06 UniRef50_D2BF20 Putative uncharacterized protein n=1 Tax=Strepto... 54 1e-06 UniRef50_D1A9C1 Histone family protein DNA-binding protein n=1 T... 54 1e-06 UniRef50_C4LBB5 Histone family protein DNA-binding protein n=1 T... 54 1e-06 UniRef50_B4U6N1 Histone family protein DNA-binding protein n=1 T... 54 1e-06 UniRef50_UPI0001BC59DB DNA-binding protein HU n=1 Tax=Fusobacter... 54 1e-06 UniRef50_B9XSG3 Histone family protein DNA-binding protein n=4 T... 54 2e-06 UniRef50_Q1V1Q3 Integration host factor beta-subunit (IHF-beta) ... 54 2e-06 UniRef50_Q1RK52 Histone-like DNA-binding protein n=6 Tax=Rickett... 54 2e-06 UniRef50_C9RKN2 Histone family protein DNA-binding protein n=1 T... 54 2e-06 UniRef50_O67923 Integration host factor beta subunit n=2 Tax=Aqu... 54 2e-06 UniRef50_Q0BW86 DNA-binding protein HU n=1 Tax=Granulibacter bet... 54 2e-06 UniRef50_Q2NQ11 DNA-binding protein n=2 Tax=Sodalis glossinidius... 53 2e-06 UniRef50_C7LTK6 Histone family protein DNA-binding protein n=1 T... 53 2e-06 UniRef50_B5ERD2 Histone family protein DNA-binding protein n=2 T... 53 2e-06 UniRef50_Q1NPH8 Histone-like bacterial DNA-binding protein n=4 T... 53 3e-06 UniRef50_C3WAE9 DNA-binding protein HU n=9 Tax=Fusobacterium Rep... 53 3e-06 UniRef50_D1UA57 Histone family protein DNA-binding protein n=1 T... 53 3e-06 UniRef50_B7BF96 Putative uncharacterized protein n=1 Tax=Parabac... 53 3e-06 UniRef50_B1GZE2 Integration host factor alpha subunit n=1 Tax=un... 53 3e-06 UniRef50_C6X423 DNA-binding protein HU-beta n=3 Tax=Flavobacteri... 53 4e-06 UniRef50_C1DT75 DNA-binding protein HU 1 (DNA-binding protein II... 53 4e-06 UniRef50_B6BR84 Integration host factor beta-subunit n=3 Tax=roo... 53 4e-06 UniRef50_C8WVU7 Histone family protein DNA-binding protein n=1 T... 53 4e-06 UniRef50_Q1J3J9 Histone-like protein DNA-binding protein n=4 Tax... 52 4e-06 >UniRef50_C4LFG7 Integration host factor subunit alpha n=448 Tax=cellular organisms RepID=IHFA_TOLAT Length = 106 Score = 168 bits (425), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 81/99 (81%), Positives = 93/99 (93%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 MALTKA+++E+LF +LG+SKRDAKELVE FFE+IR ALE+GEQVK+SGFGNF+LR KN+R Sbjct: 1 MALTKADIAEHLFTELGISKRDAKELVETFFEDIRLALESGEQVKISGFGNFELRTKNER 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVE+A P DE Sbjct: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVEHARPVDE 99 >UniRef50_Q12NT8 Integration host factor subunit alpha n=35 Tax=Gammaproteobacteria RepID=IHFA_SHEDO Length = 99 Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 81/95 (85%), Positives = 90/95 (94%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 MALTKAEM+E+LF+ LGL+KR AKE+VE FFEEIR ALE+GEQVKLSGFGNFDLRDKNQR Sbjct: 1 MALTKAEMAEHLFETLGLNKRVAKEMVESFFEEIREALESGEQVKLSGFGNFDLRDKNQR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 PGRNPKTGEDIPI+ARRVVTFRPGQKLK+RVE A+ Sbjct: 61 PGRNPKTGEDIPISARRVVTFRPGQKLKARVEAAN 95 >UniRef50_Q3JBZ6 Integration host factor subunit alpha n=9 Tax=Bacteria RepID=IHFA_NITOC Length = 99 Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 73/92 (79%), Positives = 86/92 (93%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 MALTKA+M+E L+ +LGL+KR+AKE+VE+FFE+IR ALE GE VKLSGFGNF+LRDK +R Sbjct: 1 MALTKADMTETLYQELGLNKREAKEIVEMFFEDIRCALEQGEAVKLSGFGNFELRDKGER 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 PGRNPKTGE+IPITARRVVTFRPGQKLK+RVE Sbjct: 61 PGRNPKTGEEIPITARRVVTFRPGQKLKARVE 92 >UniRef50_Q2KZM3 Integration host factor subunit alpha n=15 Tax=Proteobacteria RepID=IHFA_BORA1 Length = 116 Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 63/92 (68%), Positives = 76/92 (82%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 LTKAE++E LF+++GL+KR+AK++V+ FFEEIR AL G+ VKLSGFGNF +RDK RPG Sbjct: 12 LTKAELAELLFERVGLNKREAKDIVDTFFEEIREALARGDSVKLSGFGNFQVRDKPPRPG 71 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNPKTGE IPI ARRVVTF QKLKS VE + Sbjct: 72 RNPKTGETIPIAARRVVTFHASQKLKSTVEQS 103 >UniRef50_A1VR71 Integration host factor subunit alpha n=44 Tax=Burkholderiales RepID=IHFA_POLNA Length = 123 Score = 111 bits (278), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 51/94 (54%), Positives = 72/94 (76%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 ALTKA ++E LF+++GL+KR++KE+++ FFE I L G+ VK+SGFGNF +R K RP Sbjct: 12 ALTKAHLAELLFEQIGLNKRESKEMIDAFFELISDRLVEGKDVKISGFGNFQIRTKAPRP 71 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 GRNP+TGE IPI +RRVVTF KLK +++ ++ Sbjct: 72 GRNPRTGEAIPIESRRVVTFHASHKLKEQIQGSA 105 >UniRef50_Q4FQ67 Integration host factor subunit alpha n=10 Tax=Gammaproteobacteria RepID=IHFA_PSYA2 Length = 99 Score = 111 bits (278), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 50/91 (54%), Positives = 73/91 (80%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LTK++M E+L L L++++ + LVE FF+E+ +L +G++VKLSGFGNF+L+DKN RP Sbjct: 3 TLTKSDMIEHLMSHLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKNSRP 62 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNPKTGE + ++ARRVVTF+ GQK + +V+ Sbjct: 63 GRNPKTGEPVAVSARRVVTFKTGQKFRQQVD 93 >UniRef50_C4K783 Integration host factor (IHF), DNA-binding protein, alpha subunit n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K783_HAMD5 Length = 107 Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 55/99 (55%), Positives = 73/99 (73%), Gaps = 2/99 (2%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRAL--ENGEQVKLSGFGNFDLRDKN 58 M +TKA++ + + +K GL +++K+L+ELFFEEIR L E ++K SGFGNF+LRDK Sbjct: 1 MTITKADILDDVSEKFGLEPKESKDLLELFFEEIRCILGDEECSELKFSGFGNFNLRDKK 60 Query: 59 QRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97 RPGRNPKTGED+ I RRVVTF G KLK+ +EN + K Sbjct: 61 ARPGRNPKTGEDVLIKKRRVVTFHAGLKLKTLIENGNEK 99 >UniRef50_Q1D6D8 Integration host factor subunit alpha n=24 Tax=Deltaproteobacteria RepID=IHFA_MYXXD Length = 129 Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 47/94 (50%), Positives = 73/94 (77%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKA++ E +++K+G SK+++ E+VEL F+ ++ LE G+++K+SGFGNF +R K R G Sbjct: 1 MTKADIIEGVYEKVGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARVG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASP 96 RNP+TG++I I+ARRV+TFRP Q LKS + +P Sbjct: 61 RNPQTGKEIEISARRVLTFRPSQVLKSALNGEAP 94 >UniRef50_B1A4K2 Integration host factor subunit A-like protein n=2 Tax=Gammaproteobacteria RepID=B1A4K2_9GAMM Length = 112 Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 49/91 (53%), Positives = 64/91 (70%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M +T+ +++ YL D LG + +A+ +V+ FF++IR+ L GE+VKLSGFGNF LRDK R Sbjct: 1 MTVTRKDLAYYLADTLGFTVTEARTIVDRFFDQIRQTLAQGEEVKLSGFGNFVLRDKRAR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 PGRNPKT + ITARRVVTF Q LK Sbjct: 61 PGRNPKTKVPVEITARRVVTFHASQSLKGHC 91 >UniRef50_D2LEN1 Integration host factor, alpha subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LEN1_RHOVA Length = 245 Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 47/89 (52%), Positives = 67/89 (75%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 LT+A+++E +F+K+GL + +A ELVEL ++I ALE GE +KLS FG+F LR K++R G Sbjct: 20 LTRADLAEAVFEKVGLPRNEAAELVELVLKQIVYALERGEPIKLSSFGSFGLRQKSERVG 79 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNPKTGE +PIT RRV+ F+ +K R+ Sbjct: 80 RNPKTGEIVPITPRRVIVFKASNIMKDRI 108 >UniRef50_Q39VS3 Histone-like DNA-binding protein n=5 Tax=Deltaproteobacteria RepID=Q39VS3_GEOMG Length = 91 Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 45/89 (50%), Positives = 71/89 (79%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKA++ E +++K+G SK+++ ELVE F I+ LENGE++K++GFGNF +++K R G Sbjct: 1 MTKADIVEQIYEKVGFSKKESAELVERVFGLIKETLENGEKIKIAGFGNFVVKEKADRRG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TG++I I+ARR++TF+P Q LKS + Sbjct: 61 RNPQTGDEIIISARRILTFKPSQVLKSSI 89 >UniRef50_Q8UG61 Integration host factor subunit alpha n=29 Tax=Alphaproteobacteria RepID=IHFA_AGRT5 Length = 112 Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 46/92 (50%), Positives = 67/92 (72%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +T+A+++E +F K+GLS+ ++ ELVE +EI A+ GE VKLS F F +R+KN+R G Sbjct: 6 VTRADLAESVFRKVGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREKNERIG 65 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNPKTGE++PI+ RRV+TF+ LK R+ A Sbjct: 66 RNPKTGEEVPISPRRVMTFKASNVLKQRILKA 97 >UniRef50_B2S525 Integration host factor subunit alpha n=48 Tax=Alphaproteobacteria RepID=IHFA_BRUA1 Length = 107 Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 44/90 (48%), Positives = 66/90 (73%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T+A+++E ++ K+GLS+ ++ LVE+ +E+ A+ NGE VKLS F F +RDKN+R Sbjct: 5 TVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERI 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNPKTGE++PI RRV+TF+ LK R+ Sbjct: 65 GRNPKTGEEVPILPRRVMTFKASNVLKQRI 94 >UniRef50_Q5LQJ4 Integration host factor subunit alpha n=14 Tax=Alphaproteobacteria RepID=IHFA_SILPO Length = 100 Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 46/90 (51%), Positives = 64/90 (71%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LT+ ++SE +F ++GLS+ ++ +LVE + AL GEQVK+S FG F +RDK+ R Sbjct: 5 TLTRMDLSEAVFREVGLSRNESAQLVESMLNHMSDALVRGEQVKISSFGTFSVRDKSARV 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNPKTGE++PI RRV+TFRP +K RV Sbjct: 65 GRNPKTGEEVPIQPRRVLTFRPSHLMKERV 94 >UniRef50_A8LLT5 Integration host factor subunit alpha n=28 Tax=Alphaproteobacteria RepID=IHFA_DINSH Length = 101 Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 45/94 (47%), Positives = 65/94 (69%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LT+ ++S+ +F ++GLS+ ++ +LVE + AL GE VK+S FG F +RDK+ R Sbjct: 5 TLTRMDLSDAVFREVGLSRNESAQLVESILTHMSDALVRGESVKISSFGTFSVRDKSARI 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 GRNPKTGE++PI RRV+TFRP +K RV N + Sbjct: 65 GRNPKTGEEVPIHPRRVLTFRPSHLMKERVANGN 98 >UniRef50_Q2IWQ7 Integration host factor subunit alpha n=17 Tax=Rhizobiales RepID=IHFA_RHOP2 Length = 123 Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 62/90 (68%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T+ ++ E ++ K+GLS+ ++ VEL +EI LE GE VKLS FG+F +R K QR Sbjct: 7 TVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVRQKGQRI 66 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNPKTG ++PI+ RRV+ F+P LK R+ Sbjct: 67 GRNPKTGTEVPISPRRVMVFKPSAILKQRI 96 >UniRef50_A4YW83 Integration host factor subunit alpha n=41 Tax=Alphaproteobacteria RepID=IHFA_BRASO Length = 119 Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 43/90 (47%), Positives = 62/90 (68%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T+ ++ E ++ K+GLS+ ++ VEL +EI LE GE VKLS FG+F +R K QR Sbjct: 7 TVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVRKKGQRI 66 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNPKTG ++PI+ RRV+ F+P LK R+ Sbjct: 67 GRNPKTGTEVPISPRRVMVFKPSAILKQRI 96 >UniRef50_B9JPN0 Integration host factor alpha-subunit protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JPN0_AGRRK Length = 117 Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 42/92 (45%), Positives = 65/92 (70%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 LT+A+++ + ++GLS+ ++ ELV+ EEI AL GE V LS F F++R+K++RPG Sbjct: 6 LTRADITHSIIRQIGLSRTESAELVDTILEEICSALIRGENVGLSSFAAFNVREKSRRPG 65 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNPKTGED I ARRV++F +K++++ A Sbjct: 66 RNPKTGEDYQIAARRVISFTASDAVKTQIQKA 97 >UniRef50_B8FAQ7 Histone family protein DNA-binding protein n=6 Tax=Deltaproteobacteria RepID=B8FAQ7_DESAA Length = 97 Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 44/93 (47%), Positives = 63/93 (67%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 MALTKA++ E + ++LGL + +VE E I+ +LENG+ V +SGFG F +RDK+QR Sbjct: 1 MALTKAQIVEEIHNQLGLPAKQCATMVEDLLEIIKSSLENGDDVLISGFGKFRVRDKSQR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNP TG+ I + AR+VVTF L+ R+ + Sbjct: 61 RGRNPATGDSIILDARKVVTFTCSGVLRDRINS 93 >UniRef50_A5CWF3 Integration host factor, alpha subunit n=2 Tax=sulfur-oxidizing symbionts RepID=A5CWF3_VESOH Length = 109 Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 41/88 (46%), Positives = 61/88 (69%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M++TK +++ L + ++ A + FF++I++ L +GE VKLS FGNF +R+K+ R Sbjct: 1 MSITKKDIANVLVKSMDITHVQALSITHDFFDQIKQTLASGESVKLSSFGNFIIREKSSR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLK 88 GRNPKTGE + I+ARRVV F+ G KLK Sbjct: 61 VGRNPKTGEMVEISARRVVVFKSGPKLK 88 >UniRef50_A4MZU5 Integration host factor alpha-subunit n=1 Tax=Haemophilus influenzae 22.1-21 RepID=A4MZU5_HAEIN Length = 91 Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 42/65 (64%), Positives = 52/65 (80%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK ++ EYL DK LSK+D K +VE F EEIR +LE+G+ VKLSGFGNF+LRDK+ RP Sbjct: 3 TITKLDIIEYLSDKYHLSKQDTKNVVENFLEEIRSSLESGQDVKLSGFGNFELRDKSSRP 62 Query: 62 GRNPK 66 GRNPK Sbjct: 63 GRNPK 67 >UniRef50_C8QX16 Histone family protein DNA-binding protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QX16_9DELT Length = 95 Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 41/91 (45%), Positives = 62/91 (68%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M LTKA++ + ++ + LSK A E+VE+F + +L+ GE + LSGFG F ++ KN R Sbjct: 1 MTLTKADLIQEVYQRHNLSKSQATEVVEIFLSVAKDSLQEGEDLLLSGFGKFSVKQKNSR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNP+TGE++ + RRV+TF+P L+ RV Sbjct: 61 RGRNPQTGEELMLAPRRVITFKPSGLLRQRV 91 >UniRef50_B5YLD8 Integration host factor alpha-subunit n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YLD8_THEYD Length = 94 Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 39/90 (43%), Positives = 63/90 (70%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKA++ ++F+++GL + + ++VE FE ++ AL+ E VK+SGFG F +R K R G Sbjct: 1 MTKADLVNFIFERVGLPRTEIHKIVETVFETMKEALQEEEVVKISGFGVFTVRRKGSRIG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNPKT + + I R+VVTFRP ++LK ++ Sbjct: 61 RNPKTMQIVEIKPRKVVTFRPSEQLKQSIQ 90 >UniRef50_C6XIY2 Histone family protein DNA-binding protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XIY2_HIRBI Length = 103 Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 42/92 (45%), Positives = 63/92 (68%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +T+A++ + L ++GL+++D+ + +E E + L VKL+ FGNF +R KN R G Sbjct: 6 ITRADIVDKLVSEVGLTRQDSSDYLERVLEMVCEELVADNSVKLARFGNFVVRRKNARVG 65 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNPKTG++ PITARRVVTF+P ++ RVE A Sbjct: 66 RNPKTGKEAPITARRVVTFKPSPLMRRRVEAA 97 >UniRef50_Q6ANC3 Related to integration host factor, alpha subunit n=2 Tax=Deltaproteobacteria RepID=Q6ANC3_DESPS Length = 103 Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 42/89 (47%), Positives = 60/89 (67%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 LT+ E++E L +LG S+ E+V+ F +++ AL GE +KL FG F +RDK R G Sbjct: 13 LTRKEIAEELTGQLGYSQNICSEIVDSFLGKMKDALIEGESIKLVHFGTFTVRDKAPRTG 72 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TGE I IT R+ V+FRP +KL+ +V Sbjct: 73 RNPRTGEPITITKRQAVSFRPSKKLREQV 101 >UniRef50_B7JAF9 Integration host factor, alpha subunit, putative n=2 Tax=Acidithiobacillus ferrooxidans RepID=B7JAF9_ACIF2 Length = 107 Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 40/96 (41%), Positives = 61/96 (63%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M +TK +++ +L++ G + A++ V+ FFE +R A+ ++KLSGFG F +R K+ R Sbjct: 1 MTITKKDVANHLWEVGGWTHPQAEQFVDAFFEHMRAAIITESELKLSGFGRFTVRAKSSR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASP 96 PGRNPKTG+ I ARRVVTF L+++ P Sbjct: 61 PGRNPKTGQPYEIKARRVVTFSASALLRAKSNQIFP 96 >UniRef50_C1SGM2 Bacterial nucleoid DNA-binding protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGM2_9BACT Length = 91 Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 40/91 (43%), Positives = 60/91 (65%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKA++ E + +KLGL+K+D ++V+ F E+R + VK+SGFGNF+++ + +R G Sbjct: 1 MTKADIVELIHEKLGLTKKDIAKVVDELFNEVRDQILGKNNVKISGFGNFEVKKRGRRIG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNPKTG + I R VV FRP Q K V + Sbjct: 61 RNPKTGVETVIEPRTVVVFRPSQIFKDEVND 91 >UniRef50_D0RNW1 Integration host factor subunit alpha (IHF-alpha) n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNW1_9RICK Length = 95 Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 38/89 (42%), Positives = 62/89 (69%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +T+ ++ + + +LG+SK + + V+L FE I + E G +VK+S FG+FD++DK R G Sbjct: 5 VTRQDLYDLTYKELGISKNECIKFVDLVFESILKNFEEGNKVKVSLFGSFDVKDKKARIG 64 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNPKT E+ I++RRVVTF+P + L ++ Sbjct: 65 RNPKTKEEKEISSRRVVTFKPSKFLSKKI 93 >UniRef50_P08821 DNA-binding protein HU 1 n=13 Tax=Bacteria RepID=DBH1_BACSU Length = 92 Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 39/89 (43%), Positives = 62/89 (69%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + LSK+DA + V+ F+ I AL+NG++++L GFGNF++R+++ R G Sbjct: 1 MNKTELINAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TGE+I I A +V F+PG+ LK V Sbjct: 61 RNPQTGEEIEIPASKVPAFKPGKALKDAV 89 >UniRef50_Q6AJG8 Probable integration host factor, alpha-subunit n=1 Tax=Desulfotalea psychrophila RepID=Q6AJG8_DESPS Length = 94 Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 41/92 (44%), Positives = 63/92 (68%), Gaps = 1/92 (1%) Query: 1 MALTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQ 59 M LTKA++ + ++ K GL+K A E VE F + AL +G + LSGFG F+++DK+ Sbjct: 1 MTLTKADLIQQVYKKHEGLTKAQATESVEAFLRISKDALISGSDLLLSGFGKFNVKDKSS 60 Query: 60 RPGRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 R GRNP+TG+++ + ARRVVTF+P L+ ++ Sbjct: 61 RRGRNPQTGDELTLEARRVVTFKPSGILRDKI 92 >UniRef50_C0QI67 IhfA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI67_DESAH Length = 108 Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 40/97 (41%), Positives = 61/97 (62%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 MALTK E++E L +S+ + +++E F E I+ LE GE V +SGFG F + +K R Sbjct: 1 MALTKTEITERFQKALDISRNTSYDIMEDFLEIIKETLEQGEDVMISGFGKFCVNEKKAR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97 GRNP T E++ + ARRV+TF+ KL++ + + K Sbjct: 61 KGRNPATSEEMILPARRVITFKCSGKLRNLINTSEQK 97 >UniRef50_B1I182 Histone family protein DNA-binding protein n=66 Tax=Bacteria RepID=B1I182_DESAP Length = 91 Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 59/89 (66%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ + +K L+K+DA++ + E IR AL G++V+L GFG F+ R++ R G Sbjct: 1 MNKAELISSVAEKTNLTKKDAEKALSAMLESIREALSAGDKVQLVGFGTFETRERAARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TGE+I I A +V F+ G++L+ V Sbjct: 61 RNPQTGEEIDIAATKVPVFKAGKELRESV 89 >UniRef50_A3JHV4 Integration host factor subunit alpha n=1 Tax=Marinobacter sp. ELB17 RepID=A3JHV4_9ALTE Length = 85 Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 38/56 (67%), Positives = 46/56 (82%) Query: 12 LFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKT 67 L+D+LGL+KR+AKE+V FF+EIR AL EQVKLSGFGNFDLRDK +RPG+ K Sbjct: 20 LYDELGLNKREAKEIVGAFFDEIRGALSQNEQVKLSGFGNFDLRDKKERPGQKLKA 75 >UniRef50_B2IE05 Histone family protein DNA-binding protein n=2 Tax=Alphaproteobacteria RepID=B2IE05_BEII9 Length = 171 Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 58/91 (63%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 + +T+ +++ ++D +G+S++DA LV EI AL GE V+L+ FGNF++R K QR Sbjct: 70 ITVTRKDLASSVYDCIGISRKDADRLVTEVLSEITEALVRGENVRLASFGNFEIRAKTQR 129 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNP+TG I RRV+ F+ + L R+ Sbjct: 130 IGRNPRTGVAAVIPPRRVLKFKASKVLLDRL 160 >UniRef50_Q9K7K5 DNA-binding protein HU-1 n=51 Tax=root RepID=DBH2_BACHD Length = 90 Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 58/89 (65%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + ++ +SK+DA E+V F+ I +L G+ V+L GFGNF++R++ R G Sbjct: 1 MNKTELIHQVAERTQMSKKDAGEVVNTVFDVIAESLAQGDSVQLIGFGNFEVRERAARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TGE+I I A + F+ G++LK V Sbjct: 61 RNPQTGEEIDIAATKTPAFKAGKQLKDAV 89 >UniRef50_Q9KDA5 DNA-binding protein HU-1 n=10 Tax=Bacteria RepID=DBH1_BACHD Length = 90 Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 61/89 (68%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ + ++ LSK+DA + V+ FE I AL+ G +V+L GFG+F++R+++ R G Sbjct: 1 MNKTDLINAVAEQAELSKKDASKAVDAVFESITGALKEGGKVQLVGFGSFEVRERSARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TGE+I I A + F+PG++LK V Sbjct: 61 RNPQTGEEIEIPATKNPAFKPGKQLKDAV 89 >UniRef50_P68573 SPBc2 prophage-derived DNA-binding protein HU 2 n=3 Tax=root RepID=DBH2_BACSU Length = 92 Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 57/89 (64%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + +K G+SK++ VE F+ I AL++GE+V + GFG F++R++ R G Sbjct: 1 MNKTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TGE+I I A + F+P + LK V Sbjct: 61 RNPQTGEEIDIPATKAPAFKPAKALKDAV 89 >UniRef50_C3KW90 DNA-binding protein HU n=13 Tax=Bacteria RepID=C3KW90_CLOB6 Length = 93 Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 59/89 (66%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + +K L+K+DA+ ++ F E + ALE GE+V+L GFG F+ R++ +R G Sbjct: 1 MNKSELITSMAEKSKLTKKDAETALKAFIESVEEALEGGEKVQLVGFGTFETRERAERVG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+T E+I I A F+ G++LK +V Sbjct: 61 RNPRTKEEITIPASIAPVFKAGKELKEKV 89 >UniRef50_Q5ZUE2 HupB DNA binding protein HU-beta n=19 Tax=Bacteria RepID=Q5ZUE2_LEGPH Length = 100 Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 35/92 (38%), Positives = 56/92 (60%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + + GL+K DA ++E F + L+ G+QV + GFG+F +++ R G Sbjct: 9 MNKSELVDAIASGSGLTKADASRVLETFMATVTDVLKKGDQVVIPGFGSFSTGNRSARTG 68 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNP+TG+ I I A RV F+ G+ LK V+ A Sbjct: 69 RNPQTGKTIQIKASRVAKFKAGKNLKEAVQQA 100 >UniRef50_Q5HFV0 DNA-binding protein HU n=74 Tax=Bacteria RepID=DBH_STAAC Length = 90 Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 60/90 (66%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ + ++ L+K++A V+ FE I+ +L GE+V+L GFGNF++R++ R G Sbjct: 1 MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQNSLAKGEKVQLIGFGNFEVRERAARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TG++I I A +V F+ G+ LK V+ Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALKDAVK 90 >UniRef50_B3EBV2 Histone family protein DNA-binding protein n=3 Tax=Desulfuromonadales RepID=B3EBV2_GEOLS Length = 93 Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 35/91 (38%), Positives = 61/91 (67%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 MALTK ++ + + ++ ++ +DA LVE I+ LE+GE +K++ FG F++++K+ R Sbjct: 1 MALTKNKLIQLVAEQQHITLKDAALLVEELITLIKATLESGESLKIAKFGLFEVKEKHAR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNP+TGE I I R+V++F+P L+ + Sbjct: 61 RGRNPQTGEAITIEPRKVISFKPSVLLRQAI 91 >UniRef50_C8QYJ3 Histone family protein DNA-binding protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYJ3_9DELT Length = 97 Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 62/89 (69%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 LT+ ++++ + +K+G S+R A +LV++ F+ ++ L E +KL FG F++R K+ R G Sbjct: 6 LTRKDLAKAINEKMGFSQRSAADLVDIVFDRLKATLLAEEPIKLVQFGTFNVRRKSPRQG 65 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TG+ + I+ R +++FRP + ++ R+ Sbjct: 66 RNPRTGDPMEISKRSMISFRPSKSVRERI 94 >UniRef50_A0L712 Histone family protein DNA-binding protein n=5 Tax=Magnetococcus sp. MC-1 RepID=A0L712_MAGSM Length = 91 Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 59/90 (65%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK+E+ + + GL+K+ A +V+L F E+ +AL GE+V+L GFG F+ R + R Sbjct: 1 MTKSELILTIAAQKGLTKQYAAMVVDLVFSELGKALAKGERVELRGFGVFEPRARKPRAA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNPKTGE + + ++ V F+PG ++ RV+ Sbjct: 61 RNPKTGEKVAVESKTAVHFKPGLDMRKRVD 90 >UniRef50_Q87E48 DNA-binding protein HU n=403 Tax=cellular organisms RepID=DBH_XYLFT Length = 94 Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 37/93 (39%), Positives = 56/93 (60%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + LSK +A ++ EI AL+ G+ V L GFG F +R + +RPG Sbjct: 1 MNKTELIDGVAAAANLSKVEAGRAIDAVVNEITEALKEGDSVTLVGFGTFQVRQRAERPG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 RNPKTGE I I A +F+PG+ LK V++++ Sbjct: 61 RNPKTGEPIMIAASNNPSFKPGKALKDAVKSSA 93 >UniRef50_C9KMW2 DNA-binding protein HU n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMW2_9FIRM Length = 91 Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 59/89 (66%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + +K GL+K+DA++ V FE I++AL G++V++ GFG F++++++ R G Sbjct: 1 MNKNELVASVAEKAGLTKKDAEKAVGAIFESIQQALVEGDKVQVIGFGTFEVKERSARAG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+T E I I A + F+ G+ LK V Sbjct: 61 RNPRTNETIQIPASKNPAFKAGKALKDAV 89 >UniRef50_A6BAU5 DNA-binding protein HU n=1 Tax=Vibrio parahaemolyticus AQ3810 RepID=A6BAU5_VIBPA Length = 137 Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 33/34 (97%), Positives = 34/34 (100%) Query: 60 RPGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RPGRNPKTGEDIPITARRVVTFRPGQKLK+RVEN Sbjct: 99 RPGRNPKTGEDIPITARRVVTFRPGQKLKARVEN 132 >UniRef50_P19436 DNA-binding protein HU n=117 Tax=root RepID=DBH_THET8 Length = 96 Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 55/91 (60%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKA++ + + GL K+D K +V+ ++ AL NG +V+L+GFG F++R + R G Sbjct: 6 VTKADLVDQVAQATGLKKKDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKARTG 65 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 P T E I I A + F+PG+ LK +V+ Sbjct: 66 VKPGTKEKIKIPATQYPAFKPGKALKDKVKK 96 >UniRef50_Q8SME4 DNA-binding protein Hu homolog n=1 Tax=Cyanidioschyzon merolae RepID=Q8SME4_CYAME Length = 112 Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 55/90 (61%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + +K+GLSK+ +E++ +I + L G++VKL GFG F + + R G Sbjct: 1 MDKTELISAVAEKVGLSKKQVREVINEILSQIAKQLVLGQKVKLVGFGTFSKQYRAARDG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TGE + I R VV F PG LK +V+ Sbjct: 61 RNPRTGERLIIPERHVVVFSPGSDLKQQVQ 90 >UniRef50_A1VFK7 Histone family protein DNA-binding protein n=3 Tax=Desulfovibrio vulgaris RepID=A1VFK7_DESVV Length = 91 Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 3 LTKAEMSEYLFDKLGL-SKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TKAE+ E + K GL +K A+ ++ + A+ GE V +GFG+F + D+ R Sbjct: 1 MTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAARK 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNP+TGE+I I A +VV F PG+ LK V+ Sbjct: 61 GRNPRTGEEIVIPAGKVVKFTPGKLLKDAVK 91 >UniRef50_B4S407 Histone family protein DNA-binding protein n=14 Tax=Chlorobiaceae RepID=B4S407_PROA2 Length = 103 Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 59/91 (64%) Query: 4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGR 63 TKA++ + GL+K + + +V+ FE I +L+ G+++++ GFG+F++R KN+R R Sbjct: 6 TKADLVNTISHTTGLTKHETEAVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKNERLAR 65 Query: 64 NPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 NP+TGE + + A+ V TF+ ++ K V + Sbjct: 66 NPRTGEKVSVEAKNVPTFKISKEFKHAVSQS 96 >UniRef50_Q9JR30 DNA-binding protein HU-beta 2 n=24 Tax=Bacteria RepID=DBHC_NEIMA Length = 91 Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 51/89 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + + D+ LSKR A E V F + + L++G V L GFG F +R G Sbjct: 1 MNKSELIQAIADEAELSKRAAAEFVNAFVSVVTQELKDGNDVTLVGFGTFHAAQSAERQG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNPKTGE + I AR+ FR G+ LK V Sbjct: 61 RNPKTGEPLTIAARKTPKFRSGKALKDAV 89 >UniRef50_B2ICU5 Histone family protein DNA-binding protein n=2 Tax=Beijerinckiaceae RepID=B2ICU5_BEII9 Length = 122 Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 37/89 (41%), Positives = 55/89 (61%), Gaps = 1/89 (1%) Query: 4 TKAEMSEYLFDKLG-LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 T+A++ + ++ LS+ +E+ E+ EEI AL GE VKL FG F +R K +R G Sbjct: 21 TRADLLDAIYTSCSFLSRAQTREIFEMALEEISEALLRGETVKLRSFGLFSVRAKRERIG 80 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TG ++PI RRV+TF+ L + V Sbjct: 81 RNPRTGVEVPIKPRRVLTFKASPVLAASV 109 >UniRef50_A1WUI6 Integration host factor subunit beta n=9 Tax=cellular organisms RepID=IHFB_HALHL Length = 102 Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 34/93 (36%), Positives = 60/93 (64%), Gaps = 1/93 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ E + K L+ +D ++ V+ E + L NG+++++ GFG+F L + R Sbjct: 1 MTKSELIEAIASKQPHLAHKDVEDAVKKMLEHMSETLANGKRIEIRGFGSFSLHHRPARM 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 GRNPKTGE + + A+ V F+PG++L+ RV ++ Sbjct: 61 GRNPKTGEPVALPAKYVPHFKPGKELRERVNSS 93 >UniRef50_A3EV93 Putative integration host factor, alpha subunit HimA like n=2 Tax=Leptospirillum sp. Group II RepID=A3EV93_9BACT Length = 98 Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 3/88 (3%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELF---FEEIRRALENGEQVKLSGFGNFDLRDKNQ 59 + + ++ + + +K S+ AK + ++F EEI LENGE VK++GFG F +R N Sbjct: 1 MKRLDIVQRILEKPEYSRYTAKFVGQIFDGILEEISATLENGEDVKITGFGTFIVRKIND 60 Query: 60 RPGRNPKTGEDIPITARRVVTFRPGQKL 87 RPGRNPKTGE + I A V F P + L Sbjct: 61 RPGRNPKTGEPVLIPAHHTVLFHPSRSL 88 >UniRef50_A8PMN2 Integration host factor subunit alpha (IHF-alpha) n=1 Tax=Rickettsiella grylli RepID=A8PMN2_9COXI Length = 102 Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/84 (46%), Positives = 53/84 (63%), Gaps = 1/84 (1%) Query: 2 ALTKAEMSEYLFDK-LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 LTKA++ L + LS+ A +LV+ FFE+I ALE GE VK+SG G F R K +R Sbjct: 3 VLTKADLIHSLRQQESSLSRLVANKLVDAFFEQIMFALEQGESVKISGLGRFRRRLKKER 62 Query: 61 PGRNPKTGEDIPITARRVVTFRPG 84 PGRNP+TG +++R VV F+ Sbjct: 63 PGRNPQTGVTTQVSSRNVVLFQAS 86 >UniRef50_Q5GRX5 Bacterial nucleoid DNA-binding protein, HupA family n=9 Tax=Wolbachia RepID=Q5GRX5_WOLTR Length = 102 Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 57/93 (61%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 + +TKA ++E + ++GLSK D+ +++ +EI+ +L VK+S FG F ++ K +R Sbjct: 9 ITVTKATIAEDINQEIGLSKEDSAAIIDDILDEIKASLVKDGIVKISSFGTFLIKKKKER 68 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 PG P T + + I AR V+FRP + +K + N Sbjct: 69 PGNVPNTSKKVVIQARNSVSFRPSKVIKKLINN 101 >UniRef50_P05385 DNA-binding protein HU n=38 Tax=Bacteria RepID=DBH_CLOPA Length = 91 Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 56/89 (62%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ + +K L+K+DA+ ++ E + ALE GE+V+L GFG F+ R++ R G Sbjct: 1 MNKAELITSMAEKSKLTKKDAELALKALIESVEEALEKGEKVQLVGFGTFETRERAAREG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+T E I I A V F+ G++ K +V Sbjct: 61 RNPRTKEVINIPATTVPVFKAGKEFKDKV 89 >UniRef50_Q9XB22 DNA-binding protein HU n=33 Tax=Firmicutes RepID=DBH_STRDO Length = 91 Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 49/75 (65%) Query: 18 LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARR 77 L+K+D+ V+ F I L GE+V+L GFGNF++R++ R GRNP+TG +I I A + Sbjct: 17 LTKKDSAAAVDTVFSSIEGFLSKGEKVQLIGFGNFEVRERAARKGRNPQTGAEIKIAASK 76 Query: 78 VVTFRPGQKLKSRVE 92 V F+ G+ LK V+ Sbjct: 77 VPAFKAGKALKDAVK 91 >UniRef50_A0L640 HU family DNA-binding protein n=19 Tax=root RepID=A0L640_MAGSM Length = 91 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 49/85 (57%) Query: 7 EMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPK 66 E+ + + DK G+S+ DA V E I +L V L GFG F + ++ R GRNP+ Sbjct: 5 ELKKIVADKTGMSQADAGRAVAATLEAISESLGQSATVSLLGFGTFSVGERAAREGRNPQ 64 Query: 67 TGEDIPITARRVVTFRPGQKLKSRV 91 TGE I I+A R + F+ GQ L+ +V Sbjct: 65 TGEKINISASRTIRFKAGQSLREKV 89 >UniRef50_A6LB49 DNA-binding protein HU-beta n=5 Tax=Bacteroidales RepID=A6LB49_PARD8 Length = 94 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 35/85 (41%), Positives = 52/85 (61%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ E L DK GL K++AK++++ + E + + E++ L GFG R + QR Sbjct: 1 MNKAELIEALADKTGLQKQEAKKVLDAYIEIVTERMSENEEIVLVGFGTLIPRPQTQRLA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKL 87 RNPKTG + I AR V F+PG+ L Sbjct: 61 RNPKTGTPVMIPARTTVKFKPGKFL 85 >UniRef50_Q2S2T0 DNA-binding protein HU n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2T0_SALRD Length = 100 Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 36/99 (36%), Positives = 59/99 (59%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M++TKA++ + + D GL+K + + +VE F +R A++ G +++L FG F+++ + R Sbjct: 1 MSMTKADLIDQIADGTGLTKIETRAVVEGFMTAVRGAMKEGRRIELREFGVFEVQHRAPR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 GRNP+T E + I R FRP KL V+ A DE Sbjct: 61 TGRNPQTNEPVEIEDRYKPVFRPSDKLSEAVDAAHKADE 99 >UniRef50_Q01YK4 Histone family protein DNA-binding protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01YK4_SOLUE Length = 112 Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 62/92 (67%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKA++ E + + +++++++ +VE F+ I R+L G+++++ GFG+F R + R G Sbjct: 1 MTKADLIEEVSRVVEMTRKESEVIVEAIFDSIVRSLRTGDKIEIRGFGSFRTRQRQPRIG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNPKTG + + A+++ F+P ++LK V N+ Sbjct: 61 RNPKTGARVEVPAKKIPYFKPSKELKDVVNNS 92 >UniRef50_Q1D6M8 Integration host factor, beta subunit n=3 Tax=Proteobacteria RepID=Q1D6M8_MYXXD Length = 127 Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 62/95 (65%), Gaps = 2/95 (2%) Query: 3 LTKAEMSEYLFDK-LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T++E+ E + ++ + +R+ + +V FEE+ +AL G +++L GFG F +R + R Sbjct: 1 MTRSELIERIVERATHVPRREVEAIVHAVFEEMSQALIAGRRIELRGFGVFCVRTRRART 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASP 96 GRNPKTG+ + + ARR ++F G+ L+ R+ NA P Sbjct: 61 GRNPKTGQRVSVPARRTLSFAAGKDLRERL-NAPP 94 >UniRef50_C4K4H0 DNA-binding protein HU-alpha (HU-2) n=2 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K4H0_HAMD5 Length = 119 Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/96 (40%), Positives = 51/96 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ E + DK GL+K + E V F I AL E V++ FG F +R + +R Sbjct: 1 MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIEALGKKEPVQIIRFGTFKVRHRKERIS 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKD 98 RNPKTGE I AR V F G+ LK V +PK Sbjct: 61 RNPKTGEKIKTPAREVAVFSAGKSLKDSVHLQAPKQ 96 >UniRef50_Q58KH1 ORF98 n=3 Tax=Leptospirillum RepID=Q58KH1_9BACT Length = 98 Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 54/92 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ E + D LSK+D + +++ F I +L+ GE+V L GFG F+ K R G Sbjct: 1 MNKTELVESVSDSSHLSKKDVQAVLDGFLATIGDSLKKGEKVALVGFGTFETVKKEARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNP+TGE + I AR V F G+ L+ ++ A Sbjct: 61 RNPRTGEALEIPARTVPKFSAGKSLREAIDLA 92 >UniRef50_Q0AZ79 Bacterial nucleoid protein Hbs n=15 Tax=Bacteria RepID=Q0AZ79_SYNWW Length = 110 Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 60/85 (70%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + L +K ++++DA ++++ E I++AL G++V++ GFG+F++RD+ +R Sbjct: 1 MNKSELVKSLAEKAEITQKDAAKVLDALVESIQQALAGGDKVQIIGFGSFEVRDRKERKV 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKL 87 +P TG++I + A +V F+PG+ L Sbjct: 61 ISPATGKEITVPATKVPAFKPGKSL 85 >UniRef50_P02348 DNA-binding protein HRL53 n=11 Tax=Proteobacteria RepID=DBH5_RHILE Length = 91 Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 52/89 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + +K GL+K DA V+ F+ ++ L+N ++L+GFG+F + + G Sbjct: 1 MNKNELVSAVAEKAGLTKSDAASAVDAVFDVVQAELKNKGDIRLAGFGSFTVSHRAATKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP TG ++ I AR V F PG+ LK V Sbjct: 61 RNPSTGAEVDIPARNVPKFTPGKGLKDAV 89 >UniRef50_A7H8A7 Histone family protein DNA-binding protein n=6 Tax=Cystobacterineae RepID=A7H8A7_ANADF Length = 126 Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 56/89 (62%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+++ L K G++++ A+ +E F+ ++ AL GE +++ G G F ++ + G Sbjct: 1 MLKSDLINILVVKRGVTQKQAESTIETIFDSMKDALCRGENIEIRGLGAFHVKHYDGYQG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNPKTGE IP+ +R + FR G++L+ RV Sbjct: 61 RNPKTGEVIPVKPKRGILFRTGKELRDRV 89 >UniRef50_C0QI36 IhfB n=3 Tax=Deltaproteobacteria RepID=C0QI36_DESAH Length = 91 Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 57/90 (63%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ L + L+K +A E+VE+FF+ + AL N E+V++ G +F +++ G Sbjct: 1 MNKLELISVLKQRADLTKTEAAEIVEIFFDSLTEALANDERVEIRGLCSFFIKEYKSYTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNPKTG + I A+++ F+ G++LK RV+ Sbjct: 61 RNPKTGAKVTIPAKKLPFFKCGKELKERVD 90 >UniRef50_C0GE87 Histone family protein DNA-binding protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GE87_9FIRM Length = 84 Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 47/80 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K +++ + +KL + +DA+ V + I +L GE VKL+GFG FDLR +R Sbjct: 1 MIKTDVARSIAEKLNIQVKDAETTVNGLIDTITESLSAGEAVKLAGFGTFDLRHAPERAA 60 Query: 63 RNPKTGEDIPITARRVVTFR 82 RNPKTGE + + A TFR Sbjct: 61 RNPKTGETVQVPATHYPTFR 80 >UniRef50_C6HZV1 Putative integration host factor, alpha subunit HimA like protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HZV1_9BACT Length = 104 Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 3/84 (3%) Query: 3 LTKAEMSEYLFDK---LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQ 59 + + ++ EY + +GL ++ +E ++ EEI ++ GE VKL+GFG F++R + Sbjct: 1 MNRTDIVEYTRNNGGGIGLPRKAVREALDFVIEEITNSVLAGESVKLTGFGTFEVRKRED 60 Query: 60 RPGRNPKTGEDIPITARRVVTFRP 83 R GRNPKTGE + I + +VV FRP Sbjct: 61 RLGRNPKTGEPLLIKSHKVVVFRP 84 >UniRef50_A7HPD7 Integration host factor subunit beta n=42 Tax=Proteobacteria RepID=IHFB_PARL1 Length = 110 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 52/82 (63%) Query: 18 LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARR 77 L +RD + +V F+EI AL G++V+L GFG F ++ + R GRNP+TGE + + + Sbjct: 17 LYQRDVERIVSTIFDEISAALARGDRVELRGFGAFSVKSRPARTGRNPRTGEPVHVDEKS 76 Query: 78 VVTFRPGQKLKSRVENASPKDE 99 V F+ G++L+ R+ NA D+ Sbjct: 77 VPFFKTGKELRERLNNADIADD 98 >UniRef50_Q01W44 Histone family protein DNA-binding protein n=3 Tax=Acidobacteria RepID=Q01W44_SOLUE Length = 108 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 58/88 (65%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 L K ++ + ++ G++K A+ VE FE +++ALE G++++L GFG F+++ + Sbjct: 19 VLIKLDIINEVVNRTGITKTKAEMAVETVFESMKKALEQGDRIELRGFGVFNVKPRKTGI 78 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKS 89 GRNP+TG ++ I + V F+PG++L++ Sbjct: 79 GRNPRTGAEVSIPPGKAVRFKPGKELQT 106 >UniRef50_Q0C4A3 DNA-binding protein HU n=3 Tax=Hyphomonadaceae RepID=Q0C4A3_HYPNA Length = 88 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 50/86 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+++ + GLS+ DA + V+ FE + A ++ +QV ++GFG F + +N R G Sbjct: 1 MNKGELTKAVAAASGLSQSDAGKAVDALFETVAAAAKSRQQVAIAGFGTFSAKTRNAREG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLK 88 RNP T E I I + + F+P LK Sbjct: 61 RNPATKETIKIPEKTSLAFKPASALK 86 >UniRef50_B0VJA9 DNA-binding protein HU (DNA-binding protein II) (TL29) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJA9_9BACT Length = 95 Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 56/95 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKA++ + + + G+ ++D +V+ I+ ++ G +++ GFG F L+ + R G Sbjct: 1 MTKADLVKIISENTGIIRKDVAVVVDALLYAIKDSMAKGNHIEIRGFGTFKLKTRKPRVG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97 RNPKT + +P+ AR V TF+ ++ K+ V N K Sbjct: 61 RNPKTDQKVPVPARTVPTFKFSREFKNAVVNVKTK 95 >UniRef50_Q2W3I2 Bacterial nucleoid DNA-binding protein n=6 Tax=Bacteria RepID=Q2W3I2_MAGSA Length = 136 Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 52/90 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ + GLSK DA + V+ FE I AL+ G++V+L GFG F + + G Sbjct: 47 VNKNDLVTAVAGAAGLSKADAAKAVDGVFEAITSALKGGDEVRLVGFGTFAVASRAASEG 106 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TGE I I A + F+ G+ LK ++ Sbjct: 107 RNPRTGEKISIPASKQPKFKAGKGLKDGIQ 136 >UniRef50_P0A128 Integration host factor subunit beta n=99 Tax=Proteobacteria RepID=IHFB_PSEPK Length = 100 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYLFDKLGL-SKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ E + GL S +D + ++ E++ + L G+++++ GFG+F L + R Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNPKTG+ + + + V F+PG++L+ RV Sbjct: 61 GRNPKTGQSVSLEGKFVPHFKPGKELRDRV 90 >UniRef50_A4SLS6 Integration host factor subunit beta n=17 Tax=Gammaproteobacteria RepID=IHFB_AERS4 Length = 94 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 59/90 (65%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYLF-DKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+++ E L ++ + +D + ++ E++ L+NG+++++ GFG+F L + R Sbjct: 1 MTKSDLIEQLAASRMHMPAKDVEAAIKEILEQMASTLQNGDRIEIRGFGSFSLHYRAPRV 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNPKTG+ + +T + V F+PG++L+ RV Sbjct: 61 GRNPKTGDKVELTGKYVPHFKPGKELRERV 90 >UniRef50_B8GRS4 Integration host factor subunit beta n=17 Tax=Bacteria RepID=IHFB_THISH Length = 96 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYLFDKLG-LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ E L K L+ +D + V+ E + +AL G+++++ GFG+F L + R Sbjct: 1 MTKSELIEILARKQSHLAYKDVELSVKTMLEHLSQALATGDRIEIRGFGSFSLHFRPPRV 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNPKTGE + + + V F+PG++L+ RV Sbjct: 61 GRNPKTGETVSLPGKYVPHFKPGKELRERV 90 >UniRef50_A6CAS4 Probable DNA-binding protein HU n=2 Tax=Planctomycetaceae RepID=A6CAS4_9PLAN Length = 148 Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 60/91 (65%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK E+ + + +++GL++ KE+V+ F+ I L ++++L FG F+++ + R Sbjct: 1 MTKKEIVKVISEEIGLTQLKTKEIVQKTFDAIVDTLVTDKRIELRNFGVFEVKKRAARKA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TG+ + + + VVTF+PG++++ RV N Sbjct: 61 RNPRTGDRVDVEEKYVVTFKPGKEMEKRVRN 91 >UniRef50_A5CWG6 DNA-binding protein HU-beta n=5 Tax=Bacteria RepID=A5CWG6_VESOH Length = 91 Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 53/91 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+++ + L+K D+ ++ I AL +G+ V ++GFG+F +RD+ R G Sbjct: 1 MNKSDLVAVISQISNLTKADSARALDAMTGAITSALTSGDNVAITGFGSFVVRDRAARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE I I A +V F+ G+ LK V + Sbjct: 61 RNPQTGEAIQIKASKVPAFKAGKLLKESVNS 91 >UniRef50_A5VG36 Histone family protein DNA-binding protein n=2 Tax=Alphaproteobacteria RepID=A5VG36_SPHWW Length = 92 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 55/91 (60%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + ++++++L G +K DA++ V+L F I A GE+V L+GFG F ++D R G Sbjct: 2 MNNSDLADHLAGATGATKADARKAVDLVFAAIADAAAKGEEVSLNGFGKFKVKDVLAREG 61 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP TGE I I A + ++F + +K R+ + Sbjct: 62 RNPATGETIKIAASKKLSFSVAKAVKDRLNS 92 >UniRef50_C6XF17 Integration host factor subunit alpha n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XF17_LIBAP Length = 114 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRN +T +++ I RRVV F+ LK R+ Sbjct: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 >UniRef50_Q65SH8 Integration host factor subunit beta n=19 Tax=Proteobacteria RepID=IHFB_MANSM Length = 94 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 59/91 (64%), Gaps = 1/91 (1%) Query: 3 LTKAEMSEYLFDK-LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ E L +K +S + + V+ E + +ALE+G+++++ GFG+F L + R Sbjct: 1 MTKSELIESLVEKNHSISVKSVENAVKEILEHMSQALESGDRIEIRGFGSFSLHFRQPRV 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNPKTG + + A+ V F+ G++L+ RV+ Sbjct: 61 GRNPKTGAQVKLDAKCVPHFKAGKELRERVD 91 >UniRef50_C1A906 DNA-binding protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A906_GEMAT Length = 110 Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 58/95 (61%), Gaps = 6/95 (6%) Query: 3 LTKAEMSEYLFDKLG------LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRD 56 +TKA++ E + ++ +SK+D +V+ F + I+ AL+ + +++ GFG F +R Sbjct: 1 MTKADLVENVTARIAQTAGPTISKKDCARVVDAFLDAIKEALQEQKNIEVRGFGTFKIRQ 60 Query: 57 KNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 + R RNP+TG + ++AR V F+P ++L++ V Sbjct: 61 RKTRMARNPRTGSPVEVSARPVPVFKPSKELRAMV 95 >UniRef50_Q2J6X1 Histone-like DNA-binding protein n=4 Tax=Frankia RepID=Q2J6X1_FRASC Length = 94 Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 55/89 (61%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+++ + + ++ + +A + V+ F+ I+ A+ +GE+V ++GFG F+ ++ R G Sbjct: 1 MNKSQLVDRIAQQIEGGRSNATKAVDAVFDAIQEAVASGEKVTITGFGVFERVERAARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP TGE + + A V FRPG + KS V Sbjct: 61 RNPATGEPVHVAASVVPKFRPGSEFKSSV 89 >UniRef50_B2RHA9 DNA-binding protein HU n=2 Tax=Porphyromonas gingivalis RepID=B2RHA9_PORG3 Length = 88 Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 48/85 (56%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K + + +K L+K DA+ V F E + + GE++ L GFG F + ++ R G Sbjct: 1 MNKTDFIAAVAEKANLTKADAQRAVNAFAEVVTEQMNAGEKIALIGFGTFSVSERAARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKL 87 NPKT + I I AR+VV F+PG L Sbjct: 61 INPKTKKSISIPARKVVRFKPGSTL 85 >UniRef50_A6W7Q9 Histone family protein DNA-binding protein n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W7Q9_KINRD Length = 179 Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAEM + L +LG ++ A VE E I+ + G++V +SGFG F+ + +N R G Sbjct: 1 MNKAEMVDALEARLG-GRKQAVSAVEAVVELIQLTVAKGDKVAISGFGTFEKQARNARTG 59 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE + I V FRPG K V + Sbjct: 60 RNPRTGEAVKIKKTSVPRFRPGTAFKEIVSD 90 >UniRef50_A1AW42 Histone family protein DNA-binding protein n=4 Tax=Bacteria RepID=A1AW42_RUTMC Length = 91 Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 52/89 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + + LSK DA + + I A+ + + V+L+GFG+F +R++ R G Sbjct: 1 MNKSELIDAIALAANLSKVDASRALNATTDAITGAMASSDGVQLTGFGSFVVRNRAARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TG I I A +V F+ G+ LK V Sbjct: 61 RNPQTGATIQIKASKVAAFKAGKALKEAV 89 >UniRef50_Q5P3H7 DNA-binding protein hu-alpha n=3 Tax=Bacteria RepID=Q5P3H7_AZOSE Length = 92 Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 51/91 (56%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E E L D+L +S+ A + + I + GE+V +GFG+F++ ++ +R G Sbjct: 1 MNKGEFVEALADRLDVSRAQADRALSTVLDIIVERMAAGEKVAFTGFGSFEVSERAERTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TG I I A RV F G LK+ + + Sbjct: 61 RNPQTGASIKIAASRVPKFSAGATLKTAINS 91 >UniRef50_Q9LA96 DNA-binding protein HU-alpha n=610 Tax=cellular organisms RepID=DBHA_AERHY Length = 90 Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 53/90 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KA++ + + K LSK AK +E I ++L+ G+ V+L GFG F + + R G Sbjct: 1 MNKAQLVDAIAAKADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVNHRAGRTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TG++I I A V +F G+ LK V+ Sbjct: 61 RNPQTGKEIQIAAANVPSFVAGKALKDAVK 90 >UniRef50_A5CCR4 Histone-like DNA-binding protein HU n=2 Tax=Orientia tsutsugamushi RepID=A5CCR4_ORITB Length = 125 Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Query: 2 ALTKAEMSEYLF-DKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 AL KAE ++ + ++K D + + L + +A+ENG + + GFG+F +R + R Sbjct: 33 ALNKAEFVNFIHKNNTNMTKADIERALNLILRGVEKAIENGHDINIVGFGSFCVRFRAAR 92 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 G NPKTG I I V F+PG+ LK N Sbjct: 93 DGHNPKTGAKIIIPESYQVVFKPGKTLKDACNN 125 >UniRef50_A5EU64 Histone-like DNA-binding protein n=33 Tax=cellular organisms RepID=A5EU64_BRASB Length = 130 Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 1/96 (1%) Query: 4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGR 63 T E++E + + L+K AK +V+ F+ I A +G + L GFG F ++D R GR Sbjct: 32 TANEIAEKIAAENDLTKAQAKTIVDSVFKAIADAAVSGAETSLPGFGKFKVKDSPAREGR 91 Query: 64 NPKTGEDIPITARRVVTFRPGQKLKSRVENAS-PKD 98 NP TG I I A R +TF P + +K + + P D Sbjct: 92 NPSTGATIAIAASRKLTFTPAKAIKDSLNGGTIPND 127 >UniRef50_C3M8C0 DNA-binding protein n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C3M8C0_HAMD5 Length = 113 Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 36/96 (37%), Positives = 53/96 (55%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ E + DK GL+K + E V F I +L E V++ F F + +++R Sbjct: 1 MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIDSLGKKEPVQIIRFATFKVSHRSERMS 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKD 98 R+PKTGE I AR V F G++LK+ V SPK+ Sbjct: 61 RHPKTGEKIKTPAREVPVFSAGKRLKASVHLQSPKE 96 >UniRef50_C8PNN7 DNA-binding protein, HU family n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PNN7_9SPIO Length = 112 Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 1/89 (1%) Query: 4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG- 62 TK + + ++ K +D + +LFF E+ +ALE GE +++ GFG F ++ + R G Sbjct: 11 TKTSIVDAIYKKSDHMLKDIHSVSDLFFAEMFQALERGETIEIRGFGTFSVQFRKGRKGM 70 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNPKTGE + VV FRPG+ L + V Sbjct: 71 RNPKTGELVDTADHSVVVFRPGKILSAAV 99 >UniRef50_A6Q378 DNA-binding protein HU n=4 Tax=Epsilonproteobacteria RepID=A6Q378_NITSB Length = 91 Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 52/89 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE + + +K GLSK+D +++++ E I AL+NG++V GFG F + R Sbjct: 1 MKKAEFVQIVAEKAGLSKKDTQKVIDAALEVITDALKNGDEVAFIGFGTFTTAQRAAREA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 + P T + + A RVV F+ G+KLK V Sbjct: 61 KVPGTDRVVKVPATRVVKFKVGKKLKEAV 89 >UniRef50_A7AXT3 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7AXT3_RUMGN Length = 92 Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 61/90 (67%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T++++ + + +K+ G+++ AKE+V + + I AL G++V+ GFG+F++R++ R Sbjct: 1 MTRSDLIKTIAEKVDGVTQEKAKEIVAVTLDSIADALTAGDKVQFVGFGSFEVRERAGRT 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNP+ G +I I + V F+ G++LK +V Sbjct: 61 GRNPQDGSEIYIEPSKNVKFKAGKELKDKV 90 >UniRef50_O83278 DNA-binding protein HU n=2 Tax=Treponema pallidum RepID=DBH_TREPA Length = 105 Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 53/88 (60%) Query: 4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGR 63 T++ + + L D++ LS+R +V+ F + ALE GE V+L FG F+ R + G+ Sbjct: 7 TRSFVVDALCDEVDLSRRHVARVVDSFVSVVTAALERGETVELRDFGVFESRVRKASVGK 66 Query: 64 NPKTGEDIPITARRVVTFRPGQKLKSRV 91 + KTGE + I + VV FRP ++LKS V Sbjct: 67 SIKTGEVVSIPSHCVVVFRPSKRLKSAV 94 >UniRef50_C7Q397 Histone family protein DNA-binding protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q397_CATAD Length = 167 Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 55/93 (59%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KA+++ + +++ ++ DA++ V+ F+ I R + GE+V++ GFG FD + R G Sbjct: 2 VNKADLAAEVAEQMSGAEPDARQYVDAVFDVIMRHVAAGERVQILGFGTFDSVQRAARLG 61 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 RNP+TG I + A F GQ ++RV AS Sbjct: 62 RNPQTGAAIQVPAGTSPRFHAGQTFRTRVAEAS 94 >UniRef50_B6JCN9 Integration host factor subunit beta n=51 Tax=Alphaproteobacteria RepID=IHFB_OLICO Length = 106 Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 48/74 (64%) Query: 18 LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARR 77 L +RD + +V EEI AL G++V+L GFG F ++ + R GRNP+TGE +P+ + Sbjct: 17 LYQRDVENIVNAILEEIVSALARGDRVELRGFGAFSVKHRPARAGRNPRTGEHVPVEQKS 76 Query: 78 VVTFRPGQKLKSRV 91 V F+ G++++ R+ Sbjct: 77 VPFFKTGKEMRERL 90 >UniRef50_Q9ZF89 DNA-binding protein HU-alpha n=51 Tax=Bacteria RepID=DBHA_BURPS Length = 92 Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 49/89 (55%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + + G SK E ++ E I++A+ G+ V+L GFG+F + R G Sbjct: 1 MNKQELIDAVAAQTGASKAQTGETLDTLLEVIKKAVSKGDSVQLIGFGSFGSGKRAARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNPKTGE I I A + V F G+ K V Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFKDAV 89 >UniRef50_D1CFB6 Histone family protein DNA-binding protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFB6_THET1 Length = 84 Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 49/78 (62%) Query: 5 KAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRN 64 K E+ + ++ G++K +++ E EIR +LE GE V + GFG F + +++ R GRN Sbjct: 4 KTELINQVAERTGMTKSQVQKVFEEMLSEIRSSLEKGEDVIIRGFGTFKVTERSPRKGRN 63 Query: 65 PKTGEDIPITARRVVTFR 82 P+TGE+I I + VTFR Sbjct: 64 PRTGEEIEIPGGKRVTFR 81 >UniRef50_A4X4D0 Histone family protein DNA-binding protein n=24 Tax=Actinomycetales RepID=A4X4D0_SALTO Length = 237 Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ E L +LG ++ A ++ E++ A+ GE+V ++GFG F+ R + R Sbjct: 18 VNKAELIETLAVRLG-DRKTASAALDAVLTEVQAAVTKGEKVSITGFGAFEKRVRGARTA 76 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE + + V TFRPG K V + Sbjct: 77 RNPRTGEAVKVKKTSVPTFRPGTGFKEMVAS 107 >UniRef50_C3JSK6 DNA-binding protein (Fragment) n=1 Tax=Rhodococcus erythropolis SK121 RepID=C3JSK6_RHOER Length = 183 Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 35/89 (39%), Positives = 53/89 (59%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ + L +KLG +R A + VE + I RA+ GE V ++GFG F+ R + R Sbjct: 1 MNKAELIDVLTEKLGSDRRTATDAVEHVVDTIVRAVHRGESVTITGFGVFEQRRRAARVA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TGE + + V FRPG + K+ + Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVI 89 >UniRef50_Q89B22 DNA-binding protein HU n=16 Tax=Bacteria RepID=DBH_BUCBP Length = 92 Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 53/90 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + K LSK K ++E+ I ++L++G V+L GFG F + ++ R G Sbjct: 1 MNKSELINIISKKSNLSKIQIKNILEITLTAIIQSLKDGNSVQLVGFGTFKVNNRAARIG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TG+ I I+A + F G+ K+ ++ Sbjct: 61 RNPQTGQTIHISATKTPVFISGKTFKTAIK 90 >UniRef50_B8GX11 DNA-binding protein HU n=6 Tax=Caulobacteraceae RepID=DBH_CAUCN Length = 92 Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 53/90 (58%) Query: 4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGR 63 TKAE+ + +K G++K AK+ +E F E + +L++G+ V+L GFG F + R Sbjct: 3 TKAELVTAIAEKAGINKNQAKDALEAFIEAVTDSLKSGQDVRLVGFGTFKAVTRAAGTAR 62 Query: 64 NPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 NP+TGE + A + F+ G+ LKS + + Sbjct: 63 NPRTGETVNRPASKTARFQVGEGLKSSLNS 92 >UniRef50_C7M6F9 Histone family protein DNA-binding protein n=11 Tax=cellular organisms RepID=C7M6F9_CAPOD Length = 104 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 48/83 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKAE+ + DKLGL K D + VE F E+ LE+G+ V L GFG+F ++ + ++ G Sbjct: 1 MTKAEIVSKISDKLGLDKNDVQLTVENFMNEVINTLESGQNVYLRGFGSFIIKTRAEKTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQ 85 RN + I A + F+P + Sbjct: 61 RNISKNTTLKIPAHNIPAFKPAK 83 >UniRef50_A4JQB1 Histone family protein DNA-binding protein n=4 Tax=Bacteria RepID=A4JQB1_BURVG Length = 92 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 47/89 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + G+SK DA + V+ + I A+ E V+L GFG F ++ R G Sbjct: 1 MNKQELIDAVAAGAGVSKSDASKTVQAVLDAITDAVSRDEAVQLIGFGAFSRGQRSARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP TGE+I I A V F G+ K V Sbjct: 61 RNPTTGEEIAIAAANTVKFAAGKAFKDAV 89 >UniRef50_UPI0001693F3B DNA-binding protein HU n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693F3B Length = 114 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 52/86 (60%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ E + G SK++A++ V + I AL+ G++V+L GFG FD+R + R G Sbjct: 23 MNKEQLVEVVAKSSGFSKKNAEKAVTHVLDSIFEALKQGKEVQLVGFGKFDVRSREARMG 82 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLK 88 RN KTGE++ + A +V F G LK Sbjct: 83 RNRKTGEEVELPAGKVPVFTAGITLK 108 >UniRef50_Q12ND8 Integration host factor subunit beta n=185 Tax=Gammaproteobacteria RepID=IHFB_SHEDO Length = 95 Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 57/91 (62%), Gaps = 1/91 (1%) Query: 3 LTKAEMSEYLFDKLG-LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ E L + LS ++ + ++ E++ LE G+++++ GFG+F L + R Sbjct: 1 MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMATTLEGGDRIEIRGFGSFSLHYRAPRT 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNPKTG + + + V F+PG++L+ RV+ Sbjct: 61 GRNPKTGTSVELDGKYVPHFKPGKELRERVD 91 >UniRef50_A3ER44 Putative integration host factor, beta-subunit n=2 Tax=Leptospirillum sp. Group II RepID=A3ER44_9BACT Length = 98 Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 51/82 (62%) Query: 17 GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITAR 76 G+S D++ELV FE ++ + GE +++ FG F++ + R RNP+TGE + + R Sbjct: 16 GISLSDSRELVLDLFESMKSVILEGESLEIRRFGVFEIHHRKPRIARNPRTGEKVSVGER 75 Query: 77 RVVTFRPGQKLKSRVENASPKD 98 + + FRPG+ LK R++N + K Sbjct: 76 KSLIFRPGKILKLRMKNLTRKS 97 >UniRef50_P43722 DNA-binding protein HU n=26 Tax=Bacteria RepID=DBH_HAEIN Length = 90 Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 53/90 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ + + + L+K+ AK +E + I +L+ GE V+L GFG F + ++ R G Sbjct: 1 MNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TG +I I A +V F G+ LK ++ Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAIK 90 >UniRef50_B7CAU3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAU3_9FIRM Length = 95 Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 52/89 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K +++ L +L +SK+DA V+L F E+ AL + V ++ FG F++ D+ R G Sbjct: 5 VNKESLTQTLSIQLNMSKKDAAYAVDLIFNEMSDALASDGHVDITAFGKFEIFDRKSRMG 64 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 NP T E + I A ++ FRP Q LK++ Sbjct: 65 INPVTKERMMIQATKLPKFRPSQTLKNKC 93 >UniRef50_Q9XB18 DNA-binding protein HU homolog n=36 Tax=Actinomycetales RepID=DBH_MYCBO Length = 214 Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 52/92 (56%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ + L KLG +R A VE + I RA+ G+ V ++GFG F+ R + R Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNP+TGE + + V FRPG + K+ V A Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGA 92 >UniRef50_Q7WX14 Putative histone-like protein n=2 Tax=Proteobacteria RepID=Q7WX14_RALEH Length = 114 Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TKAE+ E + + GL+K A+E + + I A+ G+ + L GFG F ++ +R Sbjct: 22 MTKAELIEAIAAGVDGLTKAKAEEALNVTLHAIMDAVAKGDALSLVGFGTFSKGERAERM 81 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TGE+I + A R V F+ GQ+ + V Sbjct: 82 ARNPRTGEEIKVEAARTVKFKAGQRFREAV 111 >UniRef50_C4XGD8 HU_IHF family transcriptional regulator n=2 Tax=Desulfovibrio RepID=C4XGD8_DESMR Length = 100 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 55/88 (62%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LTKA++ +Y+++K ++ + K LV+ E ++++++ + +SGFG F+ DK R Sbjct: 5 TLTKADIVDYIYEKTERNRAEVKVLVDHLLELMKQSIKRDNSLLVSGFGKFESYDKKARK 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKS 89 GRNP+T I + R+VV FR +K ++ Sbjct: 65 GRNPQTNASIMLPPRKVVVFRLSRKFRA 92 >UniRef50_B9K3N0 HNS-type DNA binding protein n=11 Tax=Alphaproteobacteria RepID=B9K3N0_AGRVS Length = 92 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/85 (37%), Positives = 48/85 (56%) Query: 4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGR 63 T E+++ + + L K AK +VE F++I A G + + FG F L+D +R GR Sbjct: 3 TTNEIADKIAAEQNLPKAQAKTIVESVFKQITEAALAGAETSIPSFGKFKLKDTPEREGR 62 Query: 64 NPKTGEDIPITARRVVTFRPGQKLK 88 NP TG I I A + +TF PG+ +K Sbjct: 63 NPATGATIKIAASKKLTFTPGKAVK 87 >UniRef50_B0KQB3 Histone family protein DNA-binding protein n=14 Tax=Gammaproteobacteria RepID=B0KQB3_PSEPG Length = 101 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Query: 5 KAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRN 64 K E++ + +K L+K A +++ + I AL+ + V L GFG F+ R + R G+N Sbjct: 3 KPELAAVIAEKADLTKEKANQVLNAILDSITGALDK-DTVTLVGFGTFEKRHRGARTGKN 61 Query: 65 PKTGEDIPITARRVVTFRPGQKLKSRV 91 P+TGE + I A V F+PG+ LK V Sbjct: 62 PQTGEPVKIKASNTVAFKPGKNLKDSV 88 >UniRef50_C1DAY8 HupB1 n=3 Tax=cellular organisms RepID=C1DAY8_LARHH Length = 89 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 52/86 (60%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + + L K A + ++ E + AL+ G+ V L GFG+F + ++ +R G Sbjct: 1 MNKSELIDAIAASADLPKAAAGKALDGMIEALTEALKKGDTVTLVGFGSFYVGERAERKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLK 88 RNPKTGE+I I + + FRPG+ LK Sbjct: 61 RNPKTGEEITIPSAKTPKFRPGKALK 86 >UniRef50_Q5HUP6 DNA-binding protein HU n=32 Tax=Campylobacteraceae RepID=DBH_CAMJR Length = 98 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 47/95 (49%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKA+ + GL+K+DA + I L G+ + GFG F +++ R Sbjct: 1 MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97 R P TG+ I + A RV F+ G+ LK V AS K Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGK 95 >UniRef50_Q9ZHC5 DNA-binding protein HU homolog n=31 Tax=Bacteria RepID=DBH_MYCS2 Length = 208 Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 52/92 (56%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ + L K+G +R A VE + I RA+ G+ V ++GFG F+ R + R Sbjct: 1 MNKAELIDVLTTKMGTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNP+TGE + + V FRPG + K+ + A Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVISGA 92 >UniRef50_C0RGK7 Integration host factor subunit beta n=44 Tax=Alphaproteobacteria RepID=IHFB_BRUMB Length = 94 Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 56/93 (60%), Gaps = 1/93 (1%) Query: 3 LTKAEMSEYLFDK-LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K+E+ + + + L +RD +V F+EI AL G +V+L GFG F ++++ R Sbjct: 1 MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 GRNP+TGE + + + V F+ G+KL+ R+ A Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRLNGA 93 >UniRef50_Q2SRR9 DNA-binding protein HU 1 n=5 Tax=Mollicutes RepID=Q2SRR9_MYCCT Length = 90 Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/86 (38%), Positives = 53/86 (61%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK E+ E + +SK DA+++V F+ I + L G++V ++GFG F + +++ R G Sbjct: 1 MTKKELIEEIIINENISKVDAEKVVNRIFQTISKHLIEGKEVSVAGFGKFVISERSSREG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLK 88 NP TGE I I A R F+P ++LK Sbjct: 61 VNPSTGEKIIIPASRSARFKPAKQLK 86 >UniRef50_A3VQA5 Integration host factor subunit beta n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VQA5_9PROT Length = 113 Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 48/74 (64%) Query: 18 LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARR 77 L +D ++LV F+ I ALE G++V+L GFG F ++ + R GRNP+TGE + + + Sbjct: 17 LFMKDVEKLVSAIFDHISTALEQGDRVELRGFGTFSVKYREARTGRNPRTGESVEVEEKW 76 Query: 78 VVTFRPGQKLKSRV 91 V F+ G++++ R+ Sbjct: 77 VPFFKAGKEMRERL 90 >UniRef50_C5B6T6 Integration host factor (IHF) like DNA-binding protein n=8 Tax=Rhizobiales RepID=C5B6T6_METEA Length = 163 Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 48/79 (60%) Query: 18 LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARR 77 L ++D + +V I AL G++V++ GFG F +D R GRNP+TGE + + ++ Sbjct: 75 LYEKDCEAVVSAVLARIEDALVAGDRVEIRGFGAFSTKDIRARQGRNPRTGESVLVAEKK 134 Query: 78 VVTFRPGQKLKSRVENASP 96 V FRPG+ ++ R++ +P Sbjct: 135 AVQFRPGKGMRQRLKAMTP 153 >UniRef50_A9IJJ1 Integration host factor subunit beta n=23 Tax=Proteobacteria RepID=IHFB_BORPD Length = 119 Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 59/93 (63%), Gaps = 1/93 (1%) Query: 3 LTKAEMSEYLFDKLG-LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ L + L+ RD V+ + + +AL +G+++++ GFG+F L ++ R Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRV 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 GRNPK+GE + + ++V F+ G++L+ RV+ A Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERVDLA 93 >UniRef50_B8DRW9 Histone family protein DNA-binding protein n=11 Tax=Desulfovibrionales RepID=B8DRW9_DESVM Length = 97 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 56/92 (60%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LTKAE+ + +++K ++ + K +VE +++A++ + +SGFG F+ DK R Sbjct: 5 TLTKAEIVDAIYEKTDRNRAEVKGVVESLLGIMKQAIKKDHALLISGFGKFEAYDKKARK 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNP+T E I + R+VV FR +K ++ + + Sbjct: 65 GRNPQTDETITLPPRKVVVFRLSRKFRAELND 96 >UniRef50_Q7WDC5 Histone-like DNA-binding protein n=1 Tax=Bordetella bronchiseptica RepID=Q7WDC5_BORBR Length = 93 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 48/91 (52%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M+LTK ++ L + G S+RD + +V++ I L GE+ L G G F + R Sbjct: 1 MSLTKKDLIATLSYETGFSRRDTENMVDVLTSTISEQLIAGEEFTLPGVGKFSTSQRAAR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNP+TGE + I A V F + LK +V Sbjct: 61 TGRNPQTGEPVEIAASVAVKFSASKTLKDQV 91 >UniRef50_D2QWH5 Histone family protein DNA-binding protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QWH5_9PLAN Length = 180 Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 59/90 (65%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK E+ + + +++GL++ KE+V+ F+ I L +++L FG F+++++ R Sbjct: 56 VVTKKEIVKTISEEIGLTQLKTKEIVQKTFDAIVETLVEERRIELRNFGVFEVKERAARK 115 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TG+ + + + VVTF+PG++++ +V Sbjct: 116 ARNPRTGQPVYVAEKFVVTFKPGKEMEEKV 145 >UniRef50_C1ZKD3 Bacterial nucleoid DNA-binding protein n=2 Tax=Planctomycetaceae RepID=C1ZKD3_PLALI Length = 171 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 58/89 (65%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK E+ + + D++GL++ KE+V+ F+ I L +++L FG F+++ + R Sbjct: 1 MTKKEIVKAISDEIGLTQLKTKEIVQKTFDAIVETLVADGRIELRNFGVFEVKKRAARKA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TG+ + + + VVTF+PG++++ +V Sbjct: 61 RNPRTGDKVFVPEKFVVTFKPGKEMEEKV 89 >UniRef50_A4A2Z0 Probable DNA-binding protein HU n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A2Z0_9PLAN Length = 159 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 58/90 (64%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK E+ + + +++GL++ KE+V+ F I L +++L FG F+++ + R Sbjct: 19 VVTKKEIVKTISEEIGLTQLKTKEIVQKTFNAIVDTLVEDGRIELRNFGVFEVKKRAARK 78 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TGE + + ++ VVTF+PG++++ RV Sbjct: 79 ARNPRTGEKVYVPSKFVVTFKPGKEMEERV 108 >UniRef50_A4G858 Integration host factor subunit beta n=15 Tax=Proteobacteria RepID=IHFB_HERAR Length = 101 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 57/91 (62%), Gaps = 1/91 (1%) Query: 3 LTKAEMSEYLFDKLG-LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ L ++ L +DA V+ + + AL G+++++ GFG+F L + R Sbjct: 1 MTKSELIARLAERYPQLVAKDADYAVKTILDAMSDALATGQRIEIRGFGSFALNSRPPRI 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNPK+G+ + + +RV F+PG++L+ RV+ Sbjct: 61 GRNPKSGDKVMVPEKRVPHFKPGKQLRERVD 91 >UniRef50_C8XUL7 Putative DNA-binding protein n=1 Tax=Shigella phage phiSboM-AG3 RepID=C8XUL7_9CAUD Length = 92 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 52/87 (59%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + + E ++ ++K +A+++V F + ++ A+ G V+L GFG F+++ + R G Sbjct: 1 MNRTEFVAHIASTQNITKGEAEKVVASFIDGVKTAVAAGASVQLVGFGAFEVKHQEAREG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKS 89 RNP G+ I I A+ VV F+ G+ LK+ Sbjct: 61 RNPLNGQTIQIEAKNVVKFKVGEGLKN 87 >UniRef50_Q9HTL0 DNA-binding protein HU-alpha n=33 Tax=Bacteria RepID=DBHA_PSEAE Length = 90 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 49/89 (55%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E++ + +K L+K A ++ +EI AL + V L GFG F R + R G Sbjct: 1 MRKPELAAAIAEKADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 +NP+TG+ + I A V F+PG+ L+ V Sbjct: 61 KNPQTGQPVKIKASNTVAFKPGKALRDAV 89 >UniRef50_B6IUP4 Integration host factor subunit beta n=22 Tax=Proteobacteria RepID=IHFB_RHOCS Length = 93 Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 59/90 (65%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYLFDK-LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ L ++ L +RD +++V F+EI AL G++V+L GFG F ++ ++ R Sbjct: 1 MTKSELILRLAERNPHLYQRDVEKIVTTIFDEITDALARGDRVELRGFGAFSVKKRDARL 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNP+TGE + + + + F+ G++L+ R+ Sbjct: 61 GRNPRTGETVDVNQKFIPFFKTGKQLRERL 90 >UniRef50_A6TJN4 Histone family protein DNA-binding protein n=11 Tax=Clostridiales RepID=A6TJN4_ALKMQ Length = 92 Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KA++ + +K L+K+DA+ + F E + AL +G++V+L GFG F++R++ R G Sbjct: 1 MNKADLVAKMAEKSELTKKDAELALNSFMESVEEALVDGDKVQLVGFGTFEVRERKPRQG 60 Query: 63 RNPKTGED-IPITARRVVTFRPGQKLKSRV 91 RNP+ E I I A + F+ G+ LK ++ Sbjct: 61 RNPRNPEQVIEIPASKAPVFKAGKTLKEKI 90 >UniRef50_Q2LW81 DNA-binding protein HU n=2 Tax=Proteobacteria RepID=Q2LW81_SYNAS Length = 91 Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 1/89 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ E + +G K+ A+E V + + AL+ GE V L GFG F + ++ R G Sbjct: 1 MNKGDLVEAVTKVVG-KKKLAQETVGCVLDTMTEALKKGESVTLIGFGTFKVMKRSARTG 59 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TG+ I I A++V F G+KLK V Sbjct: 60 RNPQTGKPIKIKAKKVPKFTAGKKLKEAV 88 >UniRef50_C4XHM4 HU_IHF family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XHM4_DESMR Length = 92 Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 55/89 (61%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + +K L A E V FFE I++AL NG++V++ GFG+F +++ + G Sbjct: 1 MNKGELIKAVGEKYNLDHEFAVEFVNSFFESIKQALVNGDRVEVRGFGSFAVKEYDGYTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNPKTG + + +++ F+ G+ K+ + Sbjct: 61 RNPKTGIKVEVKPKKIPFFKTGRDFKNYL 89 >UniRef50_B9LTH2 Histone family protein DNA-binding protein n=17 Tax=cellular organisms RepID=B9LTH2_HALLT Length = 206 Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 7/82 (8%) Query: 17 GLSKRDAKELVELFFEEIRRALENGEQVKLS-------GFGNFDLRDKNQRPGRNPKTGE 69 GLS+ DAK +E F +AL+ G+++ L GFG F + ++ R GRNP+TG+ Sbjct: 124 GLSEDDAKWALEAFINATTKALKKGDRLSLGEEEDENKGFGTFSISKRSARTGRNPQTGK 183 Query: 70 DIPITARRVVTFRPGQKLKSRV 91 +I I A+ VV F+ G +L V Sbjct: 184 EIQIAAKNVVKFKAGAELSKAV 205 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 4/76 (5%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ E + + GLSK DAK ++ F + +ALE G+ L GFG+F + ++ R G Sbjct: 1 MNKAELIESMASESGLSKSDAKRALDTFTDATTKALEKGDSAVLVGFGSFSISKRSARTG 60 Query: 63 RNPKT----GEDIPIT 74 RNP + +D P+T Sbjct: 61 RNPSSRNGPVDDSPVT 76 >UniRef50_C3WGU4 DNA-binding protein HU n=13 Tax=Fusobacterium RepID=C3WGU4_9FUSO Length = 92 Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 55/84 (65%), Gaps = 1/84 (1%) Query: 3 LTKAEMSEYLFDKLGLSKR-DAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK E ++ LF+K + R +A++ V++ FE + + L +GE + + +G ++ ++ R Sbjct: 1 MTKKEFAKLLFEKGVFTTRTEAEKKVDIIFETMEKTLLDGEDISIINWGKLEVVERAPRL 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQ 85 GRNPKTGE++ I R+ V FRPG+ Sbjct: 61 GRNPKTGEEVNIGERKSVKFRPGK 84 >UniRef50_B2AK36 HU, DNA-binding transcriptional regulator, beta subunit n=2 Tax=Burkholderiaceae RepID=B2AK36_CUPTR Length = 92 Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 1/87 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ + + + GL+K A++ + + I + G+ + L GFG+F ++ +R Sbjct: 1 MTKSELIDAIAAGVDGLTKAKAEQALNVTLSAIMDTVARGDALNLVGFGSFSKGERGERI 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLK 88 RNP+TGE I + A + V FRPGQK K Sbjct: 61 ARNPRTGEKITVDAAKTVKFRPGQKFK 87 >UniRef50_Q0AIZ2 Integration host factor subunit beta n=53 Tax=Proteobacteria RepID=IHFB_NITEC Length = 105 Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 61/93 (65%), Gaps = 1/93 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ L ++ L +DA+ +V++ + + ++L GE++++ GFG+FDL + R Sbjct: 1 MTKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLARGERIEIRGFGSFDLNYRPSRV 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 GRNPK+GE + + + V F+ G+K++ ++++ Sbjct: 61 GRNPKSGEKVHVPEKYVPHFKAGKKMRELIDSS 93 >UniRef50_Q2W5P8 Bacterial nucleoid DNA-binding protein n=9 Tax=Alphaproteobacteria RepID=Q2W5P8_MAGSA Length = 117 Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 43/75 (57%) Query: 17 GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITAR 76 GLSK A +++ F I AL+ G+ V+L GFG+F + + + GRNP+TG I I A Sbjct: 41 GLSKAAADNVIDATFAAITSALKAGDDVRLVGFGSFSVTQRAAKEGRNPRTGATIKIAAS 100 Query: 77 RVVTFRPGQKLKSRV 91 + F G+ LK V Sbjct: 101 KAPKFTAGKGLKDAV 115 >UniRef50_D1RMX6 DNA-binding protein HU-beta n=1 Tax=Legionella longbeachae D-4968 RepID=D1RMX6_LEGLO Length = 92 Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 48/89 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + GLSK D++ + + L G+ + L GF + +++ R G Sbjct: 1 MNKKELIAAISNTSGLSKTDSETALNAVISCLTELLAKGDSIVLPGFASLSVKEHPARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP TG+ I I A +VV+F+ G KLK + Sbjct: 61 RNPSTGQPIEIAASKVVSFKTGTKLKEAI 89 >UniRef50_UPI0001BC7A84 putative histone-like DNA-binding protein n=1 Tax=Bacteroides sp. D2 RepID=UPI0001BC7A84 Length = 88 Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 52/86 (60%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + K LS R+A +++ + I ++ GE + L GFG+F ++++ +R G Sbjct: 1 MNKTELIKEVALKGKLSFREAGYALDVIIDTITETMQKGENITLVGFGSFVIQERKERNG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLK 88 NP TG + I A+R V FRPG K++ Sbjct: 61 HNPSTGGSMVIPAKRQVKFRPGSKMR 86 >UniRef50_A1S612 DNA-binding protein, HU family n=2 Tax=Shewanella RepID=A1S612_SHEAM Length = 91 Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 51/89 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KA +++++ + G+S+ +AK +E IR+ALE GE + L FG F+LR R Sbjct: 1 MNKATLTKFIANTTGVSQPEAKRQLEQILASIRQALEEGETLYLPQFGTFELRYHLPRQV 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNPKTGE + + +F+P LK + Sbjct: 61 RNPKTGELMEVAGFNQPSFKPAPALKQLI 89 >UniRef50_C0QR54 Histone family protein DNA-binding protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QR54_PERMH Length = 96 Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 57/91 (62%), Gaps = 5/91 (5%) Query: 3 LTKAEMSEYLFDKLG--LSKRDAKELVELFFEEIRRAL---ENGEQVKLSGFGNFDLRDK 57 +TKAE+ E++ +SK+D ++V FE+I + L E+G +V++SGFG F ++ + Sbjct: 1 MTKAEIVEWILKNKNPEVSKKDVSDVVNAIFEKIIQELVTGEDGHKVQISGFGTFIVKKR 60 Query: 58 NQRPGRNPKTGEDIPITARRVVTFRPGQKLK 88 + GRNPKT E+ I R ++F+ G+ LK Sbjct: 61 APKIGRNPKTKEEKLIPERFGISFKAGKHLK 91 >UniRef50_Q121G1 Histone-like DNA-binding protein n=12 Tax=Bacteria RepID=Q121G1_POLSJ Length = 103 Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 52/90 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + +AE+ + + + LSK ++E+ E I++A++ G+ V+L GFG F + R G Sbjct: 1 MNRAELIDTIAAETDLSKAATGRVLEVLLETIQKAVKKGDGVQLVGFGTFKSTKRAARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 +NP+TGE + I A V F G K K+ V+ Sbjct: 61 KNPRTGEAVKIPATTVPKFVAGAKFKAVVD 90 >UniRef50_B1XSK3 Histone family protein DNA-binding protein n=18 Tax=Bacteria RepID=B1XSK3_POLNS Length = 106 Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 48/91 (52%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 + L KAE+ + D +SK A+ + E I +A+ G+ V+L GFG F + R Sbjct: 11 LHLNKAELIAAIADDAEISKAKAEFALNSAIENIIKAVTKGDSVQLIGFGTFASSKRAAR 70 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNPKTGE + I A + V F G+ K V Sbjct: 71 MGRNPKTGEPLKIAAAKTVKFSAGKAFKDSV 101 >UniRef50_B8H6A5 Integration host factor subunit beta n=10 Tax=cellular organisms RepID=IHFB_CAUCN Length = 96 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 50/74 (67%) Query: 18 LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARR 77 L+++D + +V + E + ALE+G +V+L GFG +R + R GRNP+TGE + + A+ Sbjct: 17 LTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPARTGRNPRTGEAVDVRAKH 76 Query: 78 VVTFRPGQKLKSRV 91 V F+ G++L++R+ Sbjct: 77 VPFFKSGKELRARL 90 >UniRef50_P0A3H3 DNA-binding protein HRL18 n=59 Tax=cellular organisms RepID=DBH1_RHILE Length = 91 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 34/89 (38%), Positives = 52/89 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + +K GL+K DA V+ FE ++ L+NG ++L+GFG+F + + G Sbjct: 1 MNKNELVSAVAEKAGLTKADAASAVDAVFETVQSELKNGGDIRLAGFGSFSVSRREASKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP TG ++ I AR V F G+ LK V Sbjct: 61 RNPSTGAEVDIPARNVPKFSAGKGLKDAV 89 >UniRef50_Q4FLU7 Bacterial DNA-binding protein n=3 Tax=Candidatus Pelagibacter RepID=Q4FLU7_PELUB Length = 102 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 52/89 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 LTK ++ ++ ++G SK ++ L++ F I L+ +++KLS FG F +R K R G Sbjct: 8 LTKKDLINSIYMQIGFSKNISENLIDDFLITIVDNLKIEKKLKLSKFGTFSIRAKKSRIG 67 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNPKT E I+ R VV F+ ++ K V Sbjct: 68 RNPKTKEQTTISNRDVVLFKASKEFKDLV 96 >UniRef50_Q3J6Y8 Histone-like DNA-binding protein n=2 Tax=Nitrosococcus oceani RepID=Q3J6Y8_NITOC Length = 94 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 50/90 (55%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ ++ K LS+ A+ V F+ I L +V L GFG+F ++ + R G Sbjct: 1 MNKTELVNFVVLKANLSQATAQRAVNALFQTITGVLSEEGRVNLVGFGSFSVQKRAARSG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 R+P++GE I I A+ TF+P + LK V+ Sbjct: 61 RHPQSGEVIIIQAKSAPTFKPSKALKEIVQ 90 >UniRef50_B3R809 DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation n=34 Tax=root RepID=B3R809_CUPTR Length = 92 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK E+ + + + GL+K A++ + + I A+ G+ + L GFG F ++ +R Sbjct: 1 MTKTELIDAIAAGVDGLTKAKAEQALNVTLSAIMDAVAKGDTLSLIGFGTFSKGERGERM 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TGE+I + A + V F+ GQK K V Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAV 90 >UniRef50_Q3A4K6 BHL, histone-like protein n=10 Tax=Deltaproteobacteria RepID=Q3A4K6_PELCD Length = 92 Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 57/89 (64%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + L +K GL+ + A+E+V + + + L G ++++ GFG+ ++D G Sbjct: 1 MNKSELIDALAEKKGLTYKRAEEIVNIVLDTMSDTLVEGGRIEIRGFGSLVVKDYKAYIG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNPKTGE+I + +++ F+ G++L+ R+ Sbjct: 61 RNPKTGEEIEVKPKKLPFFKVGKELRERI 89 >UniRef50_B1Y0T8 Histone family protein DNA-binding protein n=6 Tax=Bacteria RepID=B1Y0T8_LEPCP Length = 116 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 50/86 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ E++ +K +SK A +E ++ L+ G+ V L GFG F + + R G Sbjct: 27 VNKSELIEHIAEKADISKAAAARALEALIGGVKSTLKKGDSVSLVGFGTFAVTKRAARSG 86 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLK 88 RNP+TG I I + +V FRPG+ LK Sbjct: 87 RNPRTGAVIKIKSSKVPKFRPGKALK 112 >UniRef50_UPI0001BCAEAF DNA-binding protein HU-beta, NS1(HU-1) n=1 Tax=Fusobacterium periodonticum ATCC 33693 RepID=UPI0001BCAEAF Length = 90 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 51/89 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ L +KLG+ K + ++ ++ E I L+ GE L G F ++D+ ++ G Sbjct: 1 MLKKELLNVLSEKLGIKKIETEKFLDTLEEVITEELKKGEDFNLGKLGTFKVKDRAEKNG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 NPKTGE I I AR+ VTF+ + L + + Sbjct: 61 VNPKTGEKIVIPARKAVTFKASKNLSTLI 89 >UniRef50_C1D9R2 HupB2 n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9R2_LARHH Length = 90 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 51/89 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK E+ + L ++ + K + +V+ + IR L G ++ L+ G F LR++ R G Sbjct: 1 MTKQELIQRLAERANVGKVETLLVVDALEQLIREELAAGGEIPLARTGKFRLREQAARMG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNPKTGE + I ARR + F P + LK V Sbjct: 61 RNPKTGESVMIPARRKIVFTPAKALKDAV 89 >UniRef50_A0LI64 Histone family protein DNA-binding protein n=6 Tax=Deltaproteobacteria RepID=A0LI64_SYNFM Length = 96 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 57/89 (64%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK+E+ E L G++ + A+ V + F+ + AL +++++ GFG+F +++ G Sbjct: 1 MTKSELIETLAKAEGITLKAAETAVNVAFQSMENALIRSDRLEIRGFGSFKVKNYEGYKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNPKTGE I + ++++ F+ G++LK RV Sbjct: 61 RNPKTGELIEVNSKKLPFFKVGKELKERV 89 >UniRef50_A0LVA1 Histone family protein DNA-binding protein n=42 Tax=Bacteria RepID=A0LVA1_ACIC1 Length = 163 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ + ++G K+ A E VE + I R + GE+V ++GFG F+ ++ R Sbjct: 1 MNKAELITAVAARIG-DKKTASEAVEAVIDTITRTVARGEKVAITGFGIFEKVERAARMA 59 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNP TGE + + V FR G +LK V A Sbjct: 60 RNPATGERVRVKKTSVPKFRAGTRLKGVVSGA 91 >UniRef50_Q1DCD2 DNA-binding protein HU n=2 Tax=Cystobacterineae RepID=Q1DCD2_MYXXD Length = 89 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 53/87 (60%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKAE+ E + + L+K+ A +++++ F I +A++ + GFG + +R + R Sbjct: 1 MTKAELVEVVAAQTRLTKKSAAQILDIVFTNIGKAVKKDARFSYPGFGTWSVRSRKARKI 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKS 89 RNP+T E + + A + + FRP ++LK+ Sbjct: 61 RNPQTNEMMKLKASKTIGFRPAKELKN 87 >UniRef50_A9AXB4 Histone family protein DNA-binding protein n=3 Tax=Chloroflexi (class) RepID=A9AXB4_HERA2 Length = 95 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 52/94 (55%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E + ++ G+SK++A+ +V+ + + L+ GE+V L+GFG F++R++ R G Sbjct: 1 MQKIEFIAEVAERTGISKKEARRVVDAMLDVVSERLQAGEKVVLTGFGTFEVRERQARQG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASP 96 NPKT E + I A + F LK V P Sbjct: 61 VNPKTRERMTIEATKTPGFSASNSLKLLVRQGKP 94 >UniRef50_C5BJS4 DNA-binding protein HU n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BJS4_TERTT Length = 93 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 46/71 (64%) Query: 18 LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARR 77 L++ A ++VE E++ AL GE+V+L G G+F +R +N G NP+TGE + I A+ Sbjct: 16 LNRVQADDVVEAIVEQVTNALARGERVQLPGLGSFSVRHRNAHTGINPQTGEALRIAAKN 75 Query: 78 VVTFRPGQKLK 88 + F+ G++L+ Sbjct: 76 QIFFKAGKRLR 86 >UniRef50_Q9XB20 DNA-binding protein HU n=65 Tax=Bacteria RepID=DBH_STRGN Length = 91 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 49/75 (65%) Query: 18 LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARR 77 L+K+D+ V+ F + L GE+V+L GFGNF++R++ R GRNP+TG++ I A + Sbjct: 17 LTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGRNPQTGKETKIAASK 76 Query: 78 VVTFRPGQKLKSRVE 92 V F+ G+ LK V+ Sbjct: 77 VPAFKAGKALKDAVK 91 >UniRef50_A4WS11 Histone family protein DNA-binding protein n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4WS11_RHOS5 Length = 90 Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 51/84 (60%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 L K+++ + +K+G+S+ + +++ ++I A+ G+ + L+GFG+F R + R G Sbjct: 4 LNKSDLVSTVAEKVGVSRLAVQTVLDEAVDQIANAVRCGDSITLTGFGSFKPRHRPARTG 63 Query: 63 RNPKTGEDIPITARRVVTFRPGQK 86 RNP+TGE + I A + F P ++ Sbjct: 64 RNPRTGEAVAIPASTSIGFTPSRR 87 >UniRef50_Q46Y54 Integration host factor subunit beta n=47 Tax=Proteobacteria RepID=IHFB_RALEJ Length = 137 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 61/98 (62%), Gaps = 6/98 (6%) Query: 3 LTKAEMSEYL---FDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQ 59 +TK+E+ E L F +L L RDA V+ + + AL +G ++++ GFG+F L + Sbjct: 1 MTKSELVEKLAARFPQLLL--RDADISVKTILDAMSDALADGHRIEIRGFGSFGLNRRPP 58 Query: 60 RPGRNPKTGEDIPITARRVVTFRPGQKLKSRVE-NASP 96 R GRNPK+GE + + +RV F+ G++L+ RV+ N +P Sbjct: 59 RVGRNPKSGERVLVPEKRVPHFKAGKELRERVDRNLTP 96 >UniRef50_Q2SY23 Integration host factor subunit beta n=94 Tax=Proteobacteria RepID=IHFB_BURTA Length = 107 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 1/92 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ L + L +DA V+ + + AL G ++++ GFG+F L + R Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNPK+GE + + + V F+PG++L+ RV+ Sbjct: 61 GRNPKSGEKVQVPEKHVPHFKPGKELRERVDG 92 >UniRef50_Q6KHG3 Bacterial nucleoid DNA-binding protein HU n=2 Tax=Bacteria RepID=Q6KHG3_MYCMO Length = 108 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 51/89 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK ++ + + SK++ +E+V F EEI L +++ LS FG F++ ++ R G Sbjct: 18 ITKKDLIATIAENQNKSKKEVEEIVNAFLEEISSELVADKKINLSSFGIFEISERAARSG 77 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 NPKT E I I A + V F+ + LK +V Sbjct: 78 INPKTSEIIQIKATKSVKFKVSKSLKDQV 106 >UniRef50_B5YH73 DNA-binding protein HU 1 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH73_THEYD Length = 92 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 54/87 (62%), Gaps = 1/87 (1%) Query: 3 LTKAEMSEYLFDKLG-LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K+E+ E + K+ L+K+ + ++++ F+ + L GE++++ GF NF ++ + +R Sbjct: 1 MKKSELIERVSKKVDILTKKQIETIIDMIFDCMIETLSRGEKIEIRGFANFKVKQRPERI 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLK 88 RNPKTGE I + +R + F+ + LK Sbjct: 61 ARNPKTGEQIKVPTQRAINFKMSKALK 87 >UniRef50_Q0BZC9 DNA-binding protein HU n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BZC9_HYPNA Length = 91 Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 51/89 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 LT ++ L + + K+ A+ +V F + + L+ G++++++G G +R R G Sbjct: 2 LTLKHLAAELSEAHEMPKKQAEAVVSDFIDRMGGHLKKGKKLRIAGLGILQVRKSPARKG 61 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP TGE+I I A + V FRP + LK RV Sbjct: 62 RNPATGEEIKIKASKKVAFRPSKDLKERV 90 >UniRef50_A6LHR2 DNA-binding protein HU-beta n=3 Tax=Bacteroidales RepID=A6LHR2_PARD8 Length = 95 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 51/91 (56%) Query: 7 EMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPK 66 E+ + L DKL +++ +A V+ + E ALE+ + L GFG ++ +R GRNPK Sbjct: 5 ELVKTLADKLSVTQAEAMRFVQAWEETTTEALESDGSLMLLGFGTLSAWEQTERIGRNPK 64 Query: 67 TGEDIPITARRVVTFRPGQKLKSRVENASPK 97 G I AR+ V F+PG+ L ++ +S K Sbjct: 65 NGVAYMIRARKSVKFKPGKLLLKQLNASSSK 95 >UniRef50_P73418 DNA-binding protein HU n=21 Tax=Cyanobacteria RepID=DBH_SYNY3 Length = 100 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 6/95 (6%) Query: 3 LTKAEMSEYLFDK----LG--LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRD 56 + K E+ + DK LG ++K++ ++ + I + GE+V L GFG+F+ R+ Sbjct: 1 MNKGELVHAVTDKAKEQLGESITKKEVDAVISAAIDCIMEVVAEGEKVTLVGFGSFEARE 60 Query: 57 KNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 + +R GRNPKTG+ + I A +V F G+ K +V Sbjct: 61 RKEREGRNPKTGDKMLIPATKVPAFSAGKMFKDKV 95 >UniRef50_Q1V2L3 Non-specific DNA-binding protein HBsu n=6 Tax=root RepID=Q1V2L3_PELUB Length = 91 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/86 (37%), Positives = 47/86 (54%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ L L LSK DA+ + I AL+ + VK++GFG + + + R G Sbjct: 1 MNKKQLIAQLSGSLNLSKADAERTFDTITNTILDALKGDDTVKIAGFGTYKVAKRKARVG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLK 88 RNP+TGE I I A + V F P + LK Sbjct: 61 RNPRTGEQIQIGASQKVKFLPAKALK 86 >UniRef50_Q30VZ6 Histone-like DNA-binding protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30VZ6_DESDG Length = 95 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 5/91 (5%) Query: 3 LTKAEMSEYLFDKLGL-----SKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDK 57 +TKAE+ + + L L + + +++ + I L G+ V+L+GFG F + + Sbjct: 1 MTKAELEMAVVEVLALNGIKATHKAVADVISATLDVITGELAGGDPVRLTGFGAFKVTRR 60 Query: 58 NQRPGRNPKTGEDIPITARRVVTFRPGQKLK 88 R GRNPKTGE + I A V F PG+ LK Sbjct: 61 TARIGRNPKTGEPVEIPASTGVKFSPGKTLK 91 >UniRef50_Q92J57 DNA-binding protein HU n=10 Tax=spotted fever group RepID=DBH_RICCN Length = 99 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 45/71 (63%) Query: 18 LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARR 77 L+K +A++ + L + + A+++ + ++GFG+F++ + R GRNPKTG + I A Sbjct: 25 LTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFEIHHRKAREGRNPKTGAKMKIDAYN 84 Query: 78 VVTFRPGQKLK 88 TFR G+K+K Sbjct: 85 QPTFRAGRKMK 95 >UniRef50_D2LFF2 Histone family protein DNA-binding protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LFF2_RHOVA Length = 126 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 47/81 (58%) Query: 7 EMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPK 66 +++ + + GLS++ A E++ I + L+ G +++++G G ++R + R GRNP Sbjct: 42 QLATEVAEAHGLSQKQANEVLSEAVSSIGKHLKKGARIRIAGLGTLEVRKRAARTGRNPA 101 Query: 67 TGEDIPITARRVVTFRPGQKL 87 TGE I I A + V FR + L Sbjct: 102 TGEAIEIKASKKVAFRAAKDL 122 >UniRef50_C5B569 Putative integration host factor n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B569_METEA Length = 140 Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 49/93 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +T AE+ L +LGL + +V + L GE VKL GFG F +RD+ R Sbjct: 45 MTLAELESVLAGRLGLGSEETSRVVRAALSLVAERLAAGEDVKLQGFGRFCVRDRPARRR 104 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 ++P+ G ++ + ARR FRP + L+ + +S Sbjct: 105 KDPRDGRELEVPARRGAVFRPSRLLREALNRSS 137 >UniRef50_P0A3I2 Integration host factor subunit beta n=3 Tax=Agrobacterium tumefaciens RepID=IHFB_AGRT9 Length = 102 Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 3 LTKAEMSEYLFDK-LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K+E+ +++ K L +RDA+ V+ +EI ALE GE+V + FG F +R + R Sbjct: 1 MIKSELVDFVAAKNPYLHRRDAENAVDAVLDEITGALERGERVDIRSFGTFVVRHRPARS 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 GRNP G + I + V FR G++++ R+ A Sbjct: 61 GRNPLNGNAVFIEEKWVPFFRAGKEIRDRLNTA 93 >UniRef50_B6KEZ7 DNA-binding protein HU, putative n=3 Tax=Toxoplasma gondii RepID=B6KEZ7_TOXGO Length = 235 Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 53/98 (54%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 A+T+ ++ + +L + + + ++ V F I +LE G++V LS FG+ LR + +R Sbjct: 120 AVTRKDLVASVAAELQVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGERV 179 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 RNP+TGE + + A TF + LK +V P E Sbjct: 180 ARNPRTGEQLTVPATTFPTFSFSKVLKDKVREVIPAHE 217 >UniRef50_C0QP77 DNA-binding protein HU 1 (DNA-binding protein II) (HB) n=1 Tax=Persephonella marina EX-H1 RepID=C0QP77_PERMH Length = 95 Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K+++ YL ++ L K+D ++ FE + AL G++V++ G G+F ++ K R Sbjct: 1 MKKSDLLNYLIERFPYLKKKDLHTILNGTFEAMTDALSKGDKVEIRGLGSFKVKVKKSRK 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNPKTG + + +RVV F+ G+ LK ++ Sbjct: 61 ARNPKTGVVVEVPEKRVVHFKMGKVLKKKL 90 >UniRef50_C2M9J7 DNA-binding protein HU n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9J7_9PORP Length = 90 Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 48/85 (56%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K + + + DK L+++D K + E E I ++ GE++ L GFG+F + + R G Sbjct: 1 MNKTDFIKTVADKAQLTQKDTKAVYEAIVETIHEEMKKGERLTLVGFGSFYVSQRAARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKL 87 NP++G+ I I A + + F+P L Sbjct: 61 INPRSGKTIDIKASKSIKFKPSTAL 85 >UniRef50_P29214 DNA-binding protein HU homolog n=6 Tax=cellular organisms RepID=DBH_GUITH Length = 93 Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 45/73 (61%) Query: 19 SKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRV 78 SK D ++++ E I + GE+V L GFG+F+ R++ R GRNP+TGE + + A R+ Sbjct: 17 SKTDIEKIITSMLEIIVDTVATGEKVTLVGFGSFEARERKAREGRNPRTGEKLFLPASRI 76 Query: 79 VTFRPGQKLKSRV 91 TF G +++V Sbjct: 77 PTFSVGNFFRNKV 89 >UniRef50_C6HU01 Histone family protein DNA-binding protein n=3 Tax=Leptospirillum ferrodiazotrophum RepID=C6HU01_9BACT Length = 99 Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 1/88 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK++++ L + G++ A+ L++ F + ++ L NG+ V++ FG + +K R Sbjct: 1 MTKSDLAARLAREFPGITCPLARTLIDYFLDAMKEGLANGDTVEIRDFGVLRVHEKAPRK 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKS 89 GRNPKTG + I AR+ V F+ G+ LK+ Sbjct: 61 GRNPKTGASVLIPARKTVRFKRGRALKN 88 >UniRef50_C6JIB7 Predicted protein n=2 Tax=Fusobacterium RepID=C6JIB7_FUSVA Length = 97 Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 5/97 (5%) Query: 3 LTKAEMSEYLFDKLGLSKR-----DAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDK 57 +T+ E + D L R +AK+ V++FF+ +++ ++ E+V +G F++ + Sbjct: 1 MTEKEFMKMYLDSFKLDGRLKNIGEAKKRVKVFFDTLKQVIDENEKVIFKDWGKFEIEHR 60 Query: 58 NQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 QR NPKT E I I A+RV+ F G+K RV+N+ Sbjct: 61 EQRIYGNPKTKERIVIPAKRVLKFTVGKKFADRVKNS 97 >UniRef50_A5CZA3 Bacterial nucleoid DNA-binding protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CZA3_PELTS Length = 92 Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 44/70 (62%) Query: 22 DAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTF 81 +AK ++ E I A N V+L GFG F +RD++ R GR+ +TG+ I I A++V+ F Sbjct: 21 EAKRALDAVTEAITFASANHNTVRLRGFGAFIIRDRSPRAGRDIRTGQPISIPAKKVIVF 80 Query: 82 RPGQKLKSRV 91 +PG+ L+ V Sbjct: 81 KPGKALRQAV 90 >UniRef50_Q1RHD4 DNA-binding protein HU n=5 Tax=Rickettsia RepID=DBH_RICBR Length = 101 Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 42/76 (55%) Query: 18 LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARR 77 +K DA++ + E I A ++ V ++GFG+F ++ + R GRNPKTG + I A + Sbjct: 25 FTKADAEKALNWVLESIISATKHQHSVNITGFGSFGIQSRKSREGRNPKTGAKMTIPAYK 84 Query: 78 VVTFRPGQKLKSRVEN 93 F+ G KLK N Sbjct: 85 QPVFKAGSKLKEACNN 100 >UniRef50_Q92GN5 Histone-like DNA-binding protein n=9 Tax=spotted fever group RepID=HLP_RICCN Length = 95 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 1/95 (1%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M +TKA+++ L KLG S +E+V F I + +++ L FG+F+++ KN R Sbjct: 1 MTITKAKIAAMLSSKLGFSNNLCEEIVHTVFSNILE-IAKEQKLTLKNFGSFEVKQKNPR 59 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 PG N T + I +++ + F P KLK+ + ++ Sbjct: 60 PGINFHTKAPVIIESKKHLRFVPSSKLKALINEST 94 >UniRef50_B9XJ11 Histone family protein DNA-binding protein n=1 Tax=bacterium Ellin514 RepID=B9XJ11_9BACT Length = 95 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 2/93 (2%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 AL+K++++ + DK G++K+ A E+++ E + +N L G G L ++ R Sbjct: 4 ALSKSQLAAAIADKNGITKKQAVEILDHIAELAYKNAKN--TFTLPGLGKLVLVNRKARV 61 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 GRNP TGE I I A+RVV FR + K + A Sbjct: 62 GRNPATGEQINIPAKRVVKFRVAKAAKDSILGA 94 >UniRef50_Q9KHS6 DNA-binding protein HU-beta n=61 Tax=Bacteria RepID=DBHB_PSEF5 Length = 90 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 48/89 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + + L K A ++ E + AL+ G+ V L GFG F + D+ R G Sbjct: 1 MNKSELIDAIAASADLPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARIG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TG+ + I A + F+ G+ LK V Sbjct: 61 RNPQTGKTLEIAAAKKPGFKAGKALKEAV 89 >UniRef50_C6IB23 HU family DNA-binding protein n=6 Tax=Bacteroides RepID=C6IB23_9BACE Length = 96 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 45/85 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ + K L K +VE E I AL GE V L GFG F+++++ R G Sbjct: 1 MKKIDLIRSIAVKSNLKKEQIAIVVEGVMEAIAEALHQGESVTLVGFGTFEVKERKARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKL 87 N TGE + I ++ V F+PG K+ Sbjct: 61 YNLSTGEIMTIPGKKTVRFKPGAKM 85 >UniRef50_A3VSB6 DNA-binding protein HU n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VSB6_9PROT Length = 95 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 5/91 (5%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEI----RRALENGEQVKLSGFGNFDLRDKN 58 ++KAE + +S +AK +VEL F EI +RA ++G+ + FG F + + Sbjct: 1 MSKAEFISNVAAAGDMSNAEAKRMVELVFGEIEAGLKRAKKDGKYT-IGTFGTFTITKRP 59 Query: 59 QRPGRNPKTGEDIPITARRVVTFRPGQKLKS 89 R GRNP+TGE+I I A + + FRP LK+ Sbjct: 60 ARKGRNPRTGEEIKIKASKSLRFRPSSNLKA 90 >UniRef50_A6U5F1 Integration host factor subunit beta n=23 Tax=Alphaproteobacteria RepID=IHFB_SINMW Length = 103 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 46/74 (62%) Query: 18 LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARR 77 L RD + +V +EI AL G +V+L GFG F ++++ R GRNP+TG+ + + + Sbjct: 17 LYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRSGRNPRTGDSVFVEEKW 76 Query: 78 VVTFRPGQKLKSRV 91 V F+ G++L+ R+ Sbjct: 77 VPFFKTGKELRERL 90 >UniRef50_B1Y4B9 Histone family protein DNA-binding protein n=6 Tax=cellular organisms RepID=B1Y4B9_LEPCP Length = 131 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 47/90 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ E L + LSK +A ++ + + ++ G V L GFG+F + R G Sbjct: 1 MNKAELIEVLAKQHTLSKAEAARILATVLDTVVATVKKGGAVTLPGFGSFKQHARAARNG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 NP TG+ I I A ++ F PG K+ V+ Sbjct: 61 VNPGTGDKIKIAAVKLPKFTPGTAFKAAVD 90 >UniRef50_Q0AI99 Histone family protein DNA-binding protein n=42 Tax=Bacteria RepID=Q0AI99_NITEC Length = 90 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 48/89 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ E + ++K +A ++ I+ AL + V L GFG F + ++ R G Sbjct: 1 MNKSELIEAIARHADITKAEAGNALDGALSAIKDALSKNDSVTLVGFGTFKVGERAARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TG +I I A +V F G+ LK V Sbjct: 61 RNPRTGAEIKIKAAKVPKFTAGKALKDAV 89 >UniRef50_C8X523 Histone family protein DNA-binding protein n=2 Tax=Desulfovibrionales RepID=C8X523_DESRD Length = 98 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 53/88 (60%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LTKA++ + ++++ S+ + K +VE + +R +++ + +SGFG F+ DK R Sbjct: 5 TLTKADIVDAIYEQGQRSRAEVKNIVEDMLDIMRDSIKKDYALLISGFGKFEAYDKEPRK 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKS 89 GRNP+T E I + R VV FR ++ ++ Sbjct: 65 GRNPQTEEAITLPGRTVVVFRLSRRFRA 92 >UniRef50_B7AFK0 Putative uncharacterized protein n=1 Tax=Bacteroides eggerthii DSM 20697 RepID=B7AFK0_9BACE Length = 106 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 46/89 (51%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + GL DA + + F + + GE + SG G F +R+ RPG Sbjct: 1 MNKQELIKAVAAASGLCVVDASKEMSAFENILEDCMARGEILSWSGVGAFCVREHKARPG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP TG + I R+VV F PG+ L+ V Sbjct: 61 RNPFTGLGMRIPTRKVVKFSPGKSLREAV 89 >UniRef50_C7XFY9 Integration host factor, alpha subunit n=2 Tax=Bacteroidales RepID=C7XFY9_9PORP Length = 98 Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 ++ + E+ + L ++ GL K + +V + + + GE + + GFG+F +++R Sbjct: 7 SMNRGELVQSLVEETGLPKNVVRAVVNALPTVVAKGIREGESISMKGFGSFVPWQQSERL 66 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKL 87 RNPKTGE++ IT R V F+ G L Sbjct: 67 ARNPKTGEEVMITPRVSVKFKAGSDL 92 >UniRef50_C3CT70 DNA-binding protein HU n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CT70_BACTU Length = 94 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 54/90 (60%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ E + ++ LSK + + V+ F I AL+NGE+V L GFG F +++ R Sbjct: 1 MNKNELLEKMKERNRLSKSENQLAVDTFINIIYEALQNGEKVSLKGFGQFVTKERKSRNI 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 R P + +++ + A+ + F PG++ K++VE Sbjct: 61 RIPSSEKEVRVPAKEIPAFEPGEEFKNKVE 90 >UniRef50_Q3SRD9 Histone-like DNA-binding protein n=6 Tax=Bacteria RepID=Q3SRD9_NITWN Length = 99 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 50/89 (56%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +T ++ L + LSK+ A+ ++ I + L+ G+++++ G G +R + R G Sbjct: 11 VTLKHLAAALAEDHELSKKAAEAILSDMVTRITKHLKKGDRIRIVGLGILQVRKRAARKG 70 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP TGE+I I A + V FR ++LK + Sbjct: 71 RNPATGEEIQIKASKKVAFRAAKELKEAI 99 >UniRef50_Q9RZ89 DNA-binding protein HU n=2 Tax=Deinococcus RepID=DBH_DEIRA Length = 122 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 46/86 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ E + D+ GL+K+ ++E + E + AL++G+ V L G G +++ R G Sbjct: 34 VAKTQLVEMVADQTGLTKKQSEEAISSMLECVVSALQSGKSVGLPGLGTLSVKETAARTG 93 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLK 88 P T E I I A + V F+ LK Sbjct: 94 VRPGTSEKIQIPAGKKVAFKVASTLK 119 >UniRef50_A3EUM1 Putative histone-like DNA-binding protein n=2 Tax=Leptospirillum sp. Group II RepID=A3EUM1_9BACT Length = 102 Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYLFDKLG-LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LTK+E+ + L K G L+K+ E+V+ F I + G V + GFG F + R Sbjct: 9 LTKSELIDTLHAKNGTLTKKAVSEVVDQVFSTITDHVAKGTAVNIVGFGKFHAVKRAART 68 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNP TG I I A F G+ K V Sbjct: 69 GRNPATGAVIKIAATTTPRFAAGKAFKDSV 98 >UniRef50_Q3IKW5 DNA-binding protein HU-alpha (HU-2), likely to play a role in DNA replication and in rpo translation n=3 Tax=Gammaproteobacteria RepID=Q3IKW5_PSEHT Length = 89 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 47/86 (54%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KA++ + K L+K+DA+ + + I ++L G+QV+++GFG F L R G Sbjct: 1 MNKAQLVTAMAQKSELTKKDAQAALTSLQKVITKSLAEGDQVQINGFGTFALSYYPARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLK 88 RNP+TG I I F+ + LK Sbjct: 61 RNPQTGASIEIEGANKAVFKASKALK 86 >UniRef50_O67461 DNA-binding protein HU n=3 Tax=Aquificaceae RepID=DBH_AQUAE Length = 94 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 6/89 (6%) Query: 3 LTKAEMSEYLFDKL------GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRD 56 +TK E++E ++D+L + K++ LV F I+ L GE+VK+SGFG F ++ Sbjct: 1 MTKKEIAEEIYDRLIRDYNVKIQKKEVYNLVSEVFTIIQECLLKGEKVKISGFGTFVVKT 60 Query: 57 KNQRPGRNPKTGEDIPITARRVVTFRPGQ 85 + + G N K E + + R++V F+P + Sbjct: 61 RKPKKGMNIKKREIVEVPERKIVLFKPSK 89 >UniRef50_A5ZCF1 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=A5ZCF1_9BACE Length = 435 Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 48/89 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 LT ++++ L K ++K+DA+ V+ FF I +ALEN + VK+ G G F L D + R Sbjct: 5 LTIQDLTDLLAAKHSMTKKDAEVFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVDSRES 64 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 N TGE I V+F P L+ + Sbjct: 65 VNVNTGERFQIKGHTKVSFSPDANLRDTI 93 >UniRef50_Q2NIZ7 DNA-binding protein HU n=3 Tax=Candidatus Phytoplasma RepID=Q2NIZ7_AYWBP Length = 106 Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 3/83 (3%) Query: 14 DKLGLSKRDAKELVELFFEEIRRALENGEQVK---LSGFGNFDLRDKNQRPGRNPKTGED 70 +K G++K++A + + F E I + E E+ K L+GFG F + +N R G+NP+TG+ Sbjct: 12 EKNGITKKEANKFLNNFIELIYQTFEETEEYKKVTLTGFGTFGAKYRNAREGKNPRTGKT 71 Query: 71 IPITARRVVTFRPGQKLKSRVEN 93 I I A++V TF+ + LK + N Sbjct: 72 IYIPAKKVPTFKFSKLLKIFLLN 94 >UniRef50_C9RMP4 Histone family protein DNA-binding protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMP4_FIBSS Length = 124 Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 47/89 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK + + + G + D K +VE F + + L G +++ GFG F + + RP Sbjct: 4 ITKQSLIQEIAKSTGFVRNDIKIVVEQFLDLLGEKLIEGNTIEIRGFGTFACKPRKARPA 63 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TGE + I R V TF+ +K ++ Sbjct: 64 RNPRTGETVLIDERLVPTFKFSNDIKDKI 92 >UniRef50_Q6MC07 Putative integration host factor n=2 Tax=Parachlamydiaceae RepID=Q6MC07_PARUW Length = 120 Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 1/77 (1%) Query: 17 GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGE-DIPITA 75 G+ D + +++ F ++I L GE+++ FG F++ ++ Q+ GRNPK I I A Sbjct: 33 GIHPNDVRHVIQAFLDKITDCLSQGERLEFREFGVFEVVERKQKIGRNPKNAAVPIVIPA 92 Query: 76 RRVVTFRPGQKLKSRVE 92 R+ V F PG+K++ VE Sbjct: 93 RQAVKFTPGKKMRQVVE 109 >UniRef50_Q1Q201 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q201_9BACT Length = 103 Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 56/96 (58%), Gaps = 1/96 (1%) Query: 4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGR 63 TK ++ E + K + K+ +++F +EI L G +++L FG F++R + R R Sbjct: 5 TKRDLCEKIARKTDNTHMVVKKTIQMFLDEIIGELSQGNRIELRDFGVFEIRQRAARKAR 64 Query: 64 NPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 NP+TGE + ++ VV F+ G+ ++ +V N SP+ + Sbjct: 65 NPRTGEVAFVPSKNVVVFKVGKLMREKVGN-SPQTQ 99 >UniRef50_Q2GIK3 Integration host factor, alpha subunit n=9 Tax=Anaplasmataceae RepID=Q2GIK3_ANAPZ Length = 106 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 47/87 (54%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LTKA ++ + ++GLS+ D+ +V +E+ +L +K+S FG F + K +R Sbjct: 12 TLTKARIASMINREIGLSREDSLAIVGEILDEMSSSLVRCGSLKISSFGIFKVIRKKERV 71 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLK 88 GRNPKT E + VTF P +K Sbjct: 72 GRNPKTLEKFVVEEHNTVTFCPSVTVK 98 >UniRef50_Q57267 DNA-binding protein HU n=41 Tax=Borrelia RepID=DBH_BORBU Length = 108 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 14 DKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR-PGRNPKTGEDIP 72 + L L K+ + +++ FFEE++ L + ++ FG F++R + R RNP+TGE + Sbjct: 25 NNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKRKGRLNARNPQTGEYVK 84 Query: 73 ITARRVVTFRPGQKLKSRV 91 + V FRPG+ LK RV Sbjct: 85 VLDHHVAYFRPGKDLKERV 103 >UniRef50_B3R0E2 Bacterial nucleoid DNA-binding protein n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R0E2_PHYMT Length = 96 Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 54/86 (62%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E + L DKL ++++ K+++ + IR L E++ ++GFG F ++ +++R G Sbjct: 1 MNKIEFIKQLSDKLETTEKEGKKIINAVIDVIRINLLQNEKILITGFGTFCVKTRSEREG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLK 88 ++PKT E I I A+++ +F+ ++ K Sbjct: 61 KHPKTREIIKIPAKKIPSFKMSKRFK 86 >UniRef50_C6IG13 Putative uncharacterized protein n=8 Tax=Bacteroides RepID=C6IG13_9BACE Length = 487 Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 47/89 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 LT ++ + L K ++K+DA+ V+ FF I +ALEN + VK+ G G F L D + R Sbjct: 5 LTIQDLIDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLVDVDSRES 64 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 N TGE I V+F P L+ + Sbjct: 65 VNVNTGERFQIKGHTKVSFTPDTNLRDTI 93 >UniRef50_B6WST8 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WST8_9DELT Length = 97 Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 40/70 (57%) Query: 18 LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARR 77 L + D + +++ + + L G +V L G G +D+ R GRNP+TGE + I ARR Sbjct: 22 LCQADVEAVLQALKDVTAQELTAGGEVPLPGLGKLKTKDRAARMGRNPRTGEAVTIPARR 81 Query: 78 VVTFRPGQKL 87 VV F P +KL Sbjct: 82 VVVFAPSEKL 91 >UniRef50_UPI0001969776 hypothetical protein BACCELL_04916 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI0001969776 Length = 471 Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 43/84 (51%) Query: 8 MSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKT 67 + E L +K G+ K DA+ V+ FF+ I +LEN + VK+ G G F L D R N T Sbjct: 10 LIELLAEKHGMDKADAESFVKEFFQLIEESLENDKYVKIRGLGTFKLIDVESRESVNINT 69 Query: 68 GEDIPITARRVVTFRPGQKLKSRV 91 GE I V+F P LK + Sbjct: 70 GERFEIQGHTKVSFAPEPALKDLI 93 >UniRef50_B0S0H5 DNA binding protein n=12 Tax=Bacteria RepID=B0S0H5_FINM2 Length = 96 Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + K LSK +++ + F + + L GE+V+L GFG F+ R++ R G Sbjct: 1 MNKSELLSSIAKKSELSKVESERALNAFIKTVEETLAKGEKVQLVGFGTFESRERKAREG 60 Query: 63 RNPKTGED-IPITARRVVTFRPGQKLKSRV 91 RNP+ E+ I I A F+ G+ LK V Sbjct: 61 RNPRNPEEKIQIPASNAPVFKAGKSLKEAV 90 >UniRef50_B8DML6 Histone family protein DNA-binding protein n=5 Tax=Desulfovibrio RepID=B8DML6_DESVM Length = 95 Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 3/88 (3%) Query: 3 LTKAEMSEYLFDKLG---LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQ 59 LTKAE L + L ++K A++ + F + + NG V+L G G F + ++ Sbjct: 2 LTKAEFVAALKEALPDVFVTKVSAEKAYDAFCSVLADGVANGAGVRLPGVGAFSVTERAA 61 Query: 60 RPGRNPKTGEDIPITARRVVTFRPGQKL 87 R GRNP+TG+ I I AR+ V F + L Sbjct: 62 RTGRNPQTGQSISIPARKAVKFMAAKTL 89 >UniRef50_A1AWN5 Histone family protein DNA-binding protein n=3 Tax=Gammaproteobacteria RepID=A1AWN5_RUTMC Length = 101 Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 51/91 (56%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 + + K ++ L D LSK DAK VE+ +E+ + + +G+ +++ GFG F + + R Sbjct: 8 LYMKKTDLILNLSDSSDLSKIDAKIAVEVILQELTQGIVSGQGIEIRGFGGFYKKHRKPR 67 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 G NPKT E + + V F+PG+ LK V Sbjct: 68 QGINPKTSERTQVGEKFVPFFKPGKLLKEIV 98 >UniRef50_C9M6K0 DNA-binding protein HU n=2 Tax=Synergistaceae RepID=C9M6K0_9BACT Length = 131 Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK E+ E++ + L + DA V I AL G +V+L GFG F++R ++ R G Sbjct: 21 VTKTELVEFVRENAQLKRSDAVAAVNAVVAGISGALSQGSKVQLVGFGTFEVRQRSARTG 80 Query: 63 RNPK-TGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+ + + I A++V F+ G+ L+S V+ Sbjct: 81 RNPQDPTKTVHIPAKKVPVFKAGKLLRSAVDT 112 >UniRef50_C4K6F1 HU, DNA-binding transcriptional regulator, alpha subunit-3 n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K6F1_HAMD5 Length = 114 Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 50/86 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KA++ + + + G++K A ++ + + I +L+ E V+L GFG F+++ ++ R Sbjct: 1 MNKAQLIDEIAENAGITKIKANTVLNIILDRITESLKKHESVQLVGFGTFNVKHRDARNA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLK 88 RNP+TGE I + A V + + LK Sbjct: 61 RNPQTGEPIELPACYVPSLNFAKALK 86 >UniRef50_B4UEN5 Histone family protein DNA-binding protein n=3 Tax=Anaeromyxobacter RepID=B4UEN5_ANASK Length = 90 Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 5/89 (5%) Query: 3 LTKAEMSE---YLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQ 59 +TKA++ E L D L SKR LV+ FE + + + ++ + GFG F ++ + Sbjct: 1 MTKADLIEKVQALHDDL--SKRQVALLVDSVFEHLAKGIRKDKRFTMPGFGTFVVKRRAG 58 Query: 60 RPGRNPKTGEDIPITARRVVTFRPGQKLK 88 R GRNP+TG +I I + V F+P +LK Sbjct: 59 RVGRNPQTGAEIQIAPTKTVGFKPAPELK 87 >UniRef50_B3C8S3 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3C8S3_9BACE Length = 433 Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 31/84 (36%), Positives = 44/84 (52%) Query: 8 MSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKT 67 + E L +K G+ K DA+ V+ FF+ I +LE+ + VK+ G G F L D + R N T Sbjct: 10 LIELLAEKHGMDKTDAESFVKEFFQLIEESLESDKYVKIKGLGTFKLIDVDSRESVNINT 69 Query: 68 GEDIPITARRVVTFRPGQKLKSRV 91 GE I V+F P LK + Sbjct: 70 GERFEIQGHTKVSFTPEPTLKDLI 93 >UniRef50_A6L5T8 DNA-binding protein HU n=2 Tax=Bacteroidales RepID=A6L5T8_BACV8 Length = 94 Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 46/85 (54%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKAE+ + + K G + +VE E++ +LE GE V L GFG+F ++ + ++ Sbjct: 1 MTKAELCKKISAKTGCDAQTILAVVESLMVEVKESLEKGENVYLRGFGSFIVKQRAEKTT 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKL 87 RN I I A + F+P ++L Sbjct: 61 RNISKNTTIIIPAHNIPAFKPSKEL 85 >UniRef50_UPI0001699D1F integration host factor, beta subunit n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699D1F Length = 122 Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 45/69 (65%), Gaps = 1/69 (1%) Query: 3 LTKAEMSEYLF-DKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ E + D+ L+ RD + ++ E++ +AL +GE++++ GFG+F L + R Sbjct: 1 MTKSELIEIVRKDQSHLAYRDIELAIKCMIEQMSQALSSGERIEIRGFGSFSLHYRPPRM 60 Query: 62 GRNPKTGED 70 GRNPK G D Sbjct: 61 GRNPKNGYD 69 >UniRef50_B5ERD0 Histone family protein DNA-binding protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ERD0_ACIF5 Length = 91 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 49/91 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E L +SK DA+++ ++F + L ++ GF F++ +K R G Sbjct: 1 MNKLEFVAALAQHGAMSKVDAEKMFQVFRHTLETELPTAGKIVFPGFCTFEVAEKPARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP TG++I I A++ + F+ G++ +V + Sbjct: 61 RNPATGQEIDIPAKKSIKFKAGKEFADKVNS 91 >UniRef50_A1AQ83 Histone family protein DNA-binding protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AQ83_PELPD Length = 126 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 48/86 (55%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + L+K A++++++F AL+ G++V + GFG F + R G Sbjct: 1 MNKTELVAKIAEGAELTKVQAEKVLDIFIASTTAALKAGDKVAIIGFGAFSAVTRKARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLK 88 RNP+TG+ + I + F PG+ LK Sbjct: 61 RNPQTGKALQIAEKTNGKFTPGKALK 86 >UniRef50_Q7NFI0 Gll3545 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NFI0_GLOVI Length = 105 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 42/75 (56%) Query: 17 GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITAR 76 GL+++ A ++ E I AL G VKLSGFG+F +R + R +P+TG+ + + A Sbjct: 22 GLTQKTAGAALDAALEVIADALAQGRTVKLSGFGSFQVRRRPARTNIHPRTGQPVLVPAA 81 Query: 77 RVVTFRPGQKLKSRV 91 F P Q L+ R+ Sbjct: 82 WNAVFSPAQALRERL 96 >UniRef50_D2BF20 Putative uncharacterized protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BF20_STRRD Length = 106 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 4/87 (4%) Query: 1 MALT----KAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRD 56 MALT K E+ E + GLS+R +E I+ A+ ++V + GFG+F++ Sbjct: 6 MALTIPMNKRELIEKAAAEAGLSRRQTAAALEAILGTIQTAVAAEDKVAIPGFGSFEIVH 65 Query: 57 KNQRPGRNPKTGEDIPITARRVVTFRP 83 K R GRNP+TGE + I F+P Sbjct: 66 KPARTGRNPQTGEPLEIAETWTAKFKP 92 >UniRef50_D1A9C1 Histone family protein DNA-binding protein n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A9C1_THECD Length = 159 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 44/89 (49%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + + E+ E + G A+ V+ FE I + GE+V ++GFG FD + R Sbjct: 1 MNRTELIEAVAALAGSDPAVARRHVDAVFETIMDRVTAGERVLVTGFGTFDKLSRPARTA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TGE + + FR GQ K RV Sbjct: 61 RNPRTGEPVEVPPTETPRFRAGQTFKDRV 89 >UniRef50_C4LBB5 Histone family protein DNA-binding protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBB5_TOLAT Length = 91 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 48/89 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ + ++ +K A E + + ++R L GE + + G G F + +K R G Sbjct: 1 MKKAELINAVATEMNTAKHIADEALFALGKVLQRQLVAGEPLLIPGIGTFSILNKAARLG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TGE + I A++ V F+ + L V Sbjct: 61 RNPQTGETVEIAAKKTVKFKAAKALADAV 89 >UniRef50_B4U6N1 Histone family protein DNA-binding protein n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U6N1_HYDS0 Length = 102 Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 2/78 (2%) Query: 18 LSKRDAKELVELFFEEIRRALENGEQ--VKLSGFGNFDLRDKNQRPGRNPKTGEDIPITA 75 L KRD ++ +F + A+ + ++ ++LSGFG F ++++ R GRNPKTG+ I Sbjct: 21 LKKRDVSRIINMFLNALEDAIISKKENKIQLSGFGTFYIKERKPRIGRNPKTGDLYKIPP 80 Query: 76 RRVVTFRPGQKLKSRVEN 93 R +TF+P Q +V + Sbjct: 81 RYNLTFKPSQNFVLQVNH 98 >UniRef50_UPI0001BC59DB DNA-binding protein HU n=1 Tax=Fusobacterium sp. 3_1_5R RepID=UPI0001BC59DB Length = 94 Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYLFDK-LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T+ E ++ LF + SK +A +E+ F+ I +A+ + FG L ++ R Sbjct: 1 MTRREFAKVLFQHGIFSSKLEADRNIEIIFQLIEKAIIEDGFFSIRHFGKIKLVERAPRM 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNPKTGE+I I AR+ + FRP + L R+ Sbjct: 61 GRNPKTGEEINIDARKSIKFRPSRFLLERL 90 >UniRef50_B9XSG3 Histone family protein DNA-binding protein n=4 Tax=Chlamydiae/Verrucomicrobia group RepID=B9XSG3_9BACT Length = 119 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 58/97 (59%), Gaps = 1/97 (1%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M +TK ++ + ++ GL ++ ++V+ + I AL G++V+L FG F+++ + R Sbjct: 1 MTMTKRDLVIRISNETGLVQQQVLDVVQKTLDYIAEALSKGDKVELRNFGVFEVKVRKAR 60 Query: 61 PGRNPKT-GEDIPITARRVVTFRPGQKLKSRVENASP 96 GRNP D+PI R VV F+PG+++++ V SP Sbjct: 61 IGRNPNAPATDVPIPQRSVVKFKPGKEMRAEVFKLSP 97 >UniRef50_Q1V1Q3 Integration host factor beta-subunit (IHF-beta) n=2 Tax=Candidatus Pelagibacter ubique RepID=Q1V1Q3_PELUB Length = 96 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 55/94 (58%), Gaps = 1/94 (1%) Query: 1 MALTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQ 59 MA+ K+++ + L + K+D ++ ++ EI++AL+ G++V+L GFG F + Sbjct: 1 MAIVKSKLLKQLANNYPNFLKKDLEKFTDIILTEIKQALKRGDRVELRGFGMFSTNIQKA 60 Query: 60 RPGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 R RNPKTGE + ++ + F+ +++ ++ N Sbjct: 61 RISRNPKTGEKVNTPEKKTIHFKMSKEMFKKLNN 94 >UniRef50_Q1RK52 Histone-like DNA-binding protein n=6 Tax=Rickettsia RepID=HLP_RICBR Length = 94 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M +TK +++ L +LG SK +E+V F I + +++ L FG+F+++ KN R Sbjct: 1 MTITKEKIAFMLNAELGFSKSLCEEVVNAVFTNILD-IAKEQKLILKNFGSFEVKHKNSR 59 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 PG N T I I + ++ F P KLK+ + Sbjct: 60 PGINFHTKSQITIEPKNILRFVPSAKLKALI 90 >UniRef50_C9RKN2 Histone family protein DNA-binding protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKN2_FIBSS Length = 116 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 48/92 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK E+ + + + G ++ K +VE + I + G ++L GFG F + + +R Sbjct: 8 ITKKEIVDEIASQTGFTQVKTKVIVEELIDAISNCVIEGNNIELRGFGRFKNKQRKERRT 67 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNPKTGE + I A+ F P + L ++ N Sbjct: 68 RNPKTGELVNIPAKVRPVFEPSKDLIEKINNV 99 >UniRef50_O67923 Integration host factor beta subunit n=2 Tax=Aquificaceae RepID=O67923_AQUAE Length = 100 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 58/97 (59%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK+++++ L + G+S + A +V + FE ++ + NGE+V++ G G F L+ K R Sbjct: 1 MTKSDIAKELARRHGISYKKALLIVNMTFEILKAKILNGEKVEVRGLGTFKLKRKPGRFV 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 +NPKTG +I + R V ++ + L+ ++ ++E Sbjct: 61 KNPKTGIEIYVKERYVPYYKMSKLLRKKLNGDKEREE 97 >UniRef50_Q0BW86 DNA-binding protein HU n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BW86_GRABC Length = 101 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/84 (40%), Positives = 45/84 (53%), Gaps = 4/84 (4%) Query: 12 LFDKLGLSKRDAKELVELF----FEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKT 67 L DK+ S K V+ E I L+ GE+V++SG G FD+ ++ R GRNP+T Sbjct: 6 LIDKIAKSTDQTKATVDAVVSAAIETISATLKAGEEVRISGLGIFDVSERAARQGRNPQT 65 Query: 68 GEDIPITARRVVTFRPGQKLKSRV 91 G I I A R FR G+ LK V Sbjct: 66 GATIEIAATRAARFRAGKALKDAV 89 >UniRef50_Q2NQ11 DNA-binding protein n=2 Tax=Sodalis glossinidius RepID=Q2NQ11_SODGM Length = 78 Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 40/66 (60%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+++ + +K +++ A +V F I AL GE V LSGFG F ++++ +R G Sbjct: 1 MNKSDLINAVIEKSDITQVKAGYVVSAFVAAITEALAAGESVALSGFGVFGVKERAERSG 60 Query: 63 RNPKTG 68 RNP+TG Sbjct: 61 RNPQTG 66 >UniRef50_C7LTK6 Histone family protein DNA-binding protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LTK6_DESBD Length = 109 Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 35/59 (59%) Query: 30 FFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLK 88 F+ IR AL G+ + L G G+F + R GRNP+TGE I I ARR + F+ + L+ Sbjct: 46 FYAVIREALAKGQGISLPGLGSFSVMLHAARMGRNPRTGETIAIPARRRIHFKTCKGLR 104 >UniRef50_B5ERD2 Histone family protein DNA-binding protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ERD2_ACIF5 Length = 73 Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 39/91 (42%), Gaps = 27/91 (29%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M +T+ E+ +YL D G S + ELV FF R Sbjct: 1 MTVTRQELMDYLVDTFGFSHKGCAELVASFFS---------------------------R 33 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 PGRNP TG ITA RVVTF+ KL+ R Sbjct: 34 PGRNPGTGVPCEITACRVVTFKARPKLRQRC 64 >UniRef50_Q1NPH8 Histone-like bacterial DNA-binding protein n=4 Tax=Deltaproteobacteria RepID=Q1NPH8_9DELT Length = 93 Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 43/72 (59%) Query: 17 GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITAR 76 G K+D + V++ E I ALE +V++ GFG+F +R++ R +NP+TG+ + I R Sbjct: 16 GFLKKDLDQAVDIMLESILEALEENRRVEIRGFGSFSVRERKARTTKNPRTGKVMHIPPR 75 Query: 77 RVVTFRPGQKLK 88 + V F + LK Sbjct: 76 KNVHFTMSKSLK 87 >UniRef50_C3WAE9 DNA-binding protein HU n=9 Tax=Fusobacterium RepID=C3WAE9_FUSMR Length = 106 Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Query: 3 LTKAEMSEYLFDKLGL-SKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK E E K L +K +A++L + F E + L G+ V GFG F+ + +R Sbjct: 1 MTKKEFVELFGAKAELKTKVEAEKLTKAFLETLEEVLVKGDSVAFIGFGKFEAAKRAERT 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKL 87 NP+T + + I AR+V F+PG+ L Sbjct: 61 CINPQTKKPMKIAARKVAKFKPGKNL 86 >UniRef50_D1UA57 Histone family protein DNA-binding protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1UA57_9DELT Length = 92 Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 2/92 (2%) Query: 3 LTKAEMSEYLFDK--LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 + K+E+ + +F++ G SK ++ V + I L ++V ++GFG+F+ R Sbjct: 1 MNKSELMDAVFERRTTGFSKCHVEKAVNDALDIIAEQLAKSDKVVITGFGSFEAVTTAPR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNP GE + I A + + F+PG+ LK V+ Sbjct: 61 LGRNPHNGEAVQIPAGKKIKFKPGKALKEAVK 92 >UniRef50_B7BF96 Putative uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7BF96_9PORP Length = 99 Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 48/97 (49%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKAE+ + + G K +VE F E ++ A+ G +V L GFG+F ++ + ++ Sbjct: 1 MTKAEIVARIAKQTGAEKEVVMNVVEAFMESVKGAMIEGNEVFLRGFGSFIIKHRAEKVA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 RN I I A + F+P + V + KD+ Sbjct: 61 RNISQNTTIVIPAHSIPAFKPSKAFADMVNGKNNKDK 97 >UniRef50_B1GZE2 Integration host factor alpha subunit n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZE2_UNCTG Length = 86 Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 45/69 (65%) Query: 19 SKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRV 78 SK++A+E V FEE+ +L+NG++V ++GFG+F++ + + RNP+T E + I + Sbjct: 16 SKKEAEEAVNKVFEEMSNSLKNGDKVIITGFGSFNMFETKTKRVRNPRTCEKLLIAPMKK 75 Query: 79 VTFRPGQKL 87 + F+ +K Sbjct: 76 IRFKQSKKF 84 >UniRef50_C6X423 DNA-binding protein HU-beta n=3 Tax=Flavobacteriaceae RepID=C6X423_FLAB3 Length = 96 Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGE-QVKLSGFGNFDLRDKNQRP 61 + K+E+ + + + G++K AK +E F + L + +V L GFG F + ++ R Sbjct: 1 MNKSELIDAMANDAGITKVAAKAALESFISNVTATLSQKDGKVSLVGFGTFSVAERAARQ 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 G NP T + I I A+ V F+ G L V Sbjct: 61 GINPATKKPIKIAAKTVAKFKAGADLAGSV 90 >UniRef50_C1DT75 DNA-binding protein HU 1 (DNA-binding protein II) (HB) n=3 Tax=Sulfurihydrogenibium RepID=C1DT75_SULAA Length = 100 Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 4/80 (5%) Query: 16 LGLSKRDAKELVELFFEEIRRAL----ENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDI 71 L L KR+ ++V F+ I L + G++V +SGFG F ++ + + GRNPKTGE+ Sbjct: 18 LSLDKREIHKIVNDTFDMISEYLTTDIKEGKKVMISGFGTFIIKRRKGKVGRNPKTGEEK 77 Query: 72 PITARRVVTFRPGQKLKSRV 91 I R ++F+ G++LK ++ Sbjct: 78 LIPDRLGISFKAGKELKKKI 97 >UniRef50_B6BR84 Integration host factor beta-subunit n=3 Tax=root RepID=B6BR84_9RICK Length = 97 Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 1/88 (1%) Query: 1 MALTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQ 59 MA+ K+++ + L D K+D ++ + EI+ AL+ G++V+L GFG F + Sbjct: 1 MAIVKSKLLKQLSDNYPNFLKKDLEKFTNIILGEIKNALKRGDRVELRGFGVFSTNIQKA 60 Query: 60 RPGRNPKTGEDIPITARRVVTFRPGQKL 87 R RNPKTGE + ++ + F+ + L Sbjct: 61 RISRNPKTGEKVNTPQKKTIHFKMSKDL 88 >UniRef50_C8WVU7 Histone family protein DNA-binding protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVU7_ALIAD Length = 90 Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 45/89 (50%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + ++GL K +++ F E L+ GE+V L G F ++ R Sbjct: 1 MNKGELVAEVQARVGLPKSQVLQVLNTFCEVTTERLQAGEEVSLPPLGKFQYVMRSARRQ 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TGE I + + V FRP LK RV Sbjct: 61 RNPQTGEMIDVPEKATVRFRPSGALKGRV 89 >UniRef50_Q1J3J9 Histone-like protein DNA-binding protein n=4 Tax=Deinococcus RepID=Q1J3J9_DEIGD Length = 149 Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 45/89 (50%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ + + DK GL+K+ ++E V + A++ G+ V L G G ++ R G Sbjct: 51 IAKTQLVDMVADKTGLTKKQSEEAVSAMLGVVVDAIKQGKSVGLPGLGTLSVKATAARTG 110 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 P T E I I A + V F+ LKS + Sbjct: 111 VRPGTSERIQIPAGKKVAFKVASTLKSSL 139 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q9KDA5 DNA-binding protein HU-1 n=10 Tax=Bacteria RepID... 129 3e-29 UniRef50_P08821 DNA-binding protein HU 1 n=13 Tax=Bacteria RepID... 128 7e-29 UniRef50_C4LFG7 Integration host factor subunit alpha n=448 Tax=... 127 8e-29 UniRef50_Q2W3I2 Bacterial nucleoid DNA-binding protein n=6 Tax=B... 125 4e-28 UniRef50_Q87E48 DNA-binding protein HU n=403 Tax=cellular organi... 125 6e-28 UniRef50_A1WUI6 Integration host factor subunit beta n=9 Tax=cel... 125 6e-28 UniRef50_Q5HFV0 DNA-binding protein HU n=74 Tax=Bacteria RepID=D... 124 1e-27 UniRef50_Q9K7K5 DNA-binding protein HU-1 n=51 Tax=root RepID=DBH... 123 1e-27 UniRef50_Q2KZM3 Integration host factor subunit alpha n=15 Tax=P... 123 2e-27 UniRef50_C9KMW2 DNA-binding protein HU n=1 Tax=Mitsuokella multa... 122 4e-27 UniRef50_Q1D6D8 Integration host factor subunit alpha n=24 Tax=D... 122 4e-27 UniRef50_P02348 DNA-binding protein HRL53 n=11 Tax=Proteobacteri... 122 4e-27 UniRef50_B1I182 Histone family protein DNA-binding protein n=66 ... 120 1e-26 UniRef50_Q3JBZ6 Integration host factor subunit alpha n=9 Tax=Ba... 120 1e-26 UniRef50_A5CWG6 DNA-binding protein HU-beta n=5 Tax=Bacteria Rep... 119 2e-26 UniRef50_A9IJJ1 Integration host factor subunit beta n=23 Tax=Pr... 119 3e-26 UniRef50_Q12NT8 Integration host factor subunit alpha n=35 Tax=G... 119 3e-26 UniRef50_Q2W5P8 Bacterial nucleoid DNA-binding protein n=9 Tax=A... 119 3e-26 UniRef50_Q58KH1 ORF98 n=3 Tax=Leptospirillum RepID=Q58KH1_9BACT 119 4e-26 UniRef50_C8QX16 Histone family protein DNA-binding protein n=1 T... 119 4e-26 UniRef50_A7HPD7 Integration host factor subunit beta n=42 Tax=Pr... 119 4e-26 UniRef50_B8GRS4 Integration host factor subunit beta n=17 Tax=Ba... 118 7e-26 UniRef50_Q01YK4 Histone family protein DNA-binding protein n=1 T... 117 1e-25 UniRef50_Q9JR30 DNA-binding protein HU-beta 2 n=24 Tax=Bacteria ... 117 1e-25 UniRef50_Q46Y54 Integration host factor subunit beta n=47 Tax=Pr... 117 1e-25 UniRef50_Q5ZUE2 HupB DNA binding protein HU-beta n=19 Tax=Bacter... 117 1e-25 UniRef50_B6JCN9 Integration host factor subunit beta n=51 Tax=Al... 116 2e-25 UniRef50_P0A128 Integration host factor subunit beta n=99 Tax=Pr... 116 2e-25 UniRef50_Q1D6M8 Integration host factor, beta subunit n=3 Tax=Pr... 116 2e-25 UniRef50_A6U5F1 Integration host factor subunit beta n=23 Tax=Al... 116 2e-25 UniRef50_Q2S2T0 DNA-binding protein HU n=1 Tax=Salinibacter rube... 116 2e-25 UniRef50_P68573 SPBc2 prophage-derived DNA-binding protein HU 2 ... 116 2e-25 UniRef50_C1DAY8 HupB1 n=3 Tax=cellular organisms RepID=C1DAY8_LARHH 115 3e-25 UniRef50_Q9KHS6 DNA-binding protein HU-beta n=61 Tax=Bacteria Re... 115 4e-25 UniRef50_Q9LA96 DNA-binding protein HU-alpha n=610 Tax=cellular ... 115 5e-25 UniRef50_A1VR71 Integration host factor subunit alpha n=44 Tax=B... 115 5e-25 UniRef50_Q8SME4 DNA-binding protein Hu homolog n=1 Tax=Cyanidios... 115 6e-25 UniRef50_P43722 DNA-binding protein HU n=26 Tax=Bacteria RepID=D... 114 7e-25 UniRef50_A5CCR4 Histone-like DNA-binding protein HU n=2 Tax=Orie... 114 7e-25 UniRef50_B1A4K2 Integration host factor subunit A-like protein n... 114 1e-24 UniRef50_Q2SY23 Integration host factor subunit beta n=94 Tax=Pr... 114 1e-24 UniRef50_A4JQB1 Histone family protein DNA-binding protein n=4 T... 114 1e-24 UniRef50_A3VQA5 Integration host factor subunit beta n=1 Tax=Par... 113 1e-24 UniRef50_A1AW42 Histone family protein DNA-binding protein n=4 T... 113 2e-24 UniRef50_Q0AI99 Histone family protein DNA-binding protein n=42 ... 113 2e-24 UniRef50_A4G858 Integration host factor subunit beta n=15 Tax=Pr... 113 2e-24 UniRef50_Q0AIZ2 Integration host factor subunit beta n=53 Tax=Pr... 113 2e-24 UniRef50_A1VFK7 Histone family protein DNA-binding protein n=3 T... 112 3e-24 UniRef50_Q3A4K6 BHL, histone-like protein n=10 Tax=Deltaproteoba... 112 4e-24 UniRef50_Q9HTL0 DNA-binding protein HU-alpha n=33 Tax=Bacteria R... 112 4e-24 UniRef50_C0RGK7 Integration host factor subunit beta n=44 Tax=Al... 112 4e-24 UniRef50_A6TJN4 Histone family protein DNA-binding protein n=11 ... 112 4e-24 UniRef50_D1RMX6 DNA-binding protein HU-beta n=1 Tax=Legionella l... 112 5e-24 UniRef50_A4SLS6 Integration host factor subunit beta n=17 Tax=Ga... 112 5e-24 UniRef50_B2IE05 Histone family protein DNA-binding protein n=2 T... 112 5e-24 UniRef50_B6IUP4 Integration host factor subunit beta n=22 Tax=Pr... 112 5e-24 UniRef50_C4K6F1 HU, DNA-binding transcriptional regulator, alpha... 111 5e-24 UniRef50_Q7WDC5 Histone-like DNA-binding protein n=1 Tax=Bordete... 111 6e-24 UniRef50_Q9XB22 DNA-binding protein HU n=33 Tax=Firmicutes RepID... 111 6e-24 UniRef50_Q5LQJ4 Integration host factor subunit alpha n=14 Tax=A... 111 7e-24 UniRef50_P0A3I2 Integration host factor subunit beta n=3 Tax=Agr... 111 8e-24 UniRef50_P05385 DNA-binding protein HU n=38 Tax=Bacteria RepID=D... 111 8e-24 UniRef50_Q2J6X1 Histone-like DNA-binding protein n=4 Tax=Frankia... 111 8e-24 UniRef50_A8LLT5 Integration host factor subunit alpha n=28 Tax=A... 111 8e-24 UniRef50_Q9ZF89 DNA-binding protein HU-alpha n=51 Tax=Bacteria R... 110 1e-23 UniRef50_B8FAQ7 Histone family protein DNA-binding protein n=6 T... 110 1e-23 UniRef50_Q39VS3 Histone-like DNA-binding protein n=5 Tax=Deltapr... 110 1e-23 UniRef50_Q5P3H7 DNA-binding protein hu-alpha n=3 Tax=Bacteria Re... 110 1e-23 UniRef50_C3KW90 DNA-binding protein HU n=13 Tax=Bacteria RepID=C... 109 3e-23 UniRef50_C0QI36 IhfB n=3 Tax=Deltaproteobacteria RepID=C0QI36_DESAH 109 3e-23 UniRef50_UPI0001693F3B DNA-binding protein HU n=1 Tax=Paenibacil... 109 3e-23 UniRef50_Q12ND8 Integration host factor subunit beta n=185 Tax=G... 109 4e-23 UniRef50_Q4FQ67 Integration host factor subunit alpha n=10 Tax=G... 109 4e-23 UniRef50_Q2IWQ7 Integration host factor subunit alpha n=17 Tax=R... 108 5e-23 UniRef50_Q65SH8 Integration host factor subunit beta n=19 Tax=Pr... 108 5e-23 UniRef50_C5B6T6 Integration host factor (IHF) like DNA-binding p... 108 5e-23 UniRef50_C4K4H0 DNA-binding protein HU-alpha (HU-2) n=2 Tax=Cand... 108 6e-23 UniRef50_Q6AJG8 Probable integration host factor, alpha-subunit ... 108 6e-23 UniRef50_A9AXB4 Histone family protein DNA-binding protein n=3 T... 108 6e-23 UniRef50_D1A9C1 Histone family protein DNA-binding protein n=1 T... 108 7e-23 UniRef50_Q3J6Y8 Histone-like DNA-binding protein n=2 Tax=Nitroso... 107 9e-23 UniRef50_A0L640 HU family DNA-binding protein n=19 Tax=root RepI... 107 9e-23 UniRef50_B8H6A5 Integration host factor subunit beta n=10 Tax=ce... 107 9e-23 UniRef50_A7AXT3 Putative uncharacterized protein n=1 Tax=Ruminoc... 107 9e-23 UniRef50_Q6ANC3 Related to integration host factor, alpha subuni... 107 1e-22 UniRef50_C1A906 DNA-binding protein n=1 Tax=Gemmatimonas auranti... 107 1e-22 UniRef50_D2QWH5 Histone family protein DNA-binding protein n=1 T... 107 1e-22 UniRef50_Q0AZ79 Bacterial nucleoid protein Hbs n=15 Tax=Bacteria... 107 1e-22 UniRef50_A4YW83 Integration host factor subunit alpha n=41 Tax=A... 107 1e-22 UniRef50_A4A2Z0 Probable DNA-binding protein HU n=1 Tax=Blastopi... 107 1e-22 UniRef50_B4S407 Histone family protein DNA-binding protein n=14 ... 107 1e-22 UniRef50_C1ZKD3 Bacterial nucleoid DNA-binding protein n=2 Tax=P... 107 1e-22 UniRef50_B2RHA9 DNA-binding protein HU n=2 Tax=Porphyromonas gin... 107 2e-22 UniRef50_P0A3H3 DNA-binding protein HRL18 n=59 Tax=cellular orga... 107 2e-22 UniRef50_C6BPZ9 Histone family protein DNA-binding protein n=1 T... 106 2e-22 UniRef50_Q7WX14 Putative histone-like protein n=2 Tax=Proteobact... 106 2e-22 UniRef50_C3M8C0 DNA-binding protein n=1 Tax=Candidatus Hamiltone... 106 2e-22 UniRef50_B0KQB3 Histone family protein DNA-binding protein n=14 ... 105 3e-22 UniRef50_A6LB49 DNA-binding protein HU-beta n=5 Tax=Bacteroidale... 105 3e-22 UniRef50_B7JAF9 Integration host factor, alpha subunit, putative... 105 3e-22 UniRef50_C5BJS4 DNA-binding protein HU n=1 Tax=Teredinibacter tu... 105 4e-22 UniRef50_B6KEZ7 DNA-binding protein HU, putative n=3 Tax=Toxopla... 105 4e-22 UniRef50_A7H8A7 Histone family protein DNA-binding protein n=6 T... 105 4e-22 UniRef50_Q7NFI0 Gll3545 protein n=1 Tax=Gloeobacter violaceus Re... 105 4e-22 UniRef50_A6CAS4 Probable DNA-binding protein HU n=2 Tax=Planctom... 105 5e-22 UniRef50_B0VJA9 DNA-binding protein HU (DNA-binding protein II) ... 105 5e-22 UniRef50_B0S0H5 DNA binding protein n=12 Tax=Bacteria RepID=B0S0... 105 5e-22 UniRef50_A0L712 Histone family protein DNA-binding protein n=5 T... 105 6e-22 UniRef50_C1SGM2 Bacterial nucleoid DNA-binding protein n=1 Tax=D... 105 6e-22 UniRef50_A1AWN5 Histone family protein DNA-binding protein n=3 T... 104 9e-22 UniRef50_B2S525 Integration host factor subunit alpha n=48 Tax=A... 104 1e-21 UniRef50_C8WVU7 Histone family protein DNA-binding protein n=1 T... 104 1e-21 UniRef50_B1XSK3 Histone family protein DNA-binding protein n=18 ... 104 1e-21 UniRef50_Q121G1 Histone-like DNA-binding protein n=12 Tax=Bacter... 104 1e-21 UniRef50_C9RMP4 Histone family protein DNA-binding protein n=1 T... 104 1e-21 UniRef50_D1UA57 Histone family protein DNA-binding protein n=1 T... 104 1e-21 UniRef50_Q5HUP6 DNA-binding protein HU n=32 Tax=Campylobacterace... 103 1e-21 UniRef50_P19436 DNA-binding protein HU n=117 Tax=root RepID=DBH_... 103 1e-21 UniRef50_D2LEN1 Integration host factor, alpha subunit n=1 Tax=R... 103 1e-21 UniRef50_Q3IKW5 DNA-binding protein HU-alpha (HU-2), likely to p... 103 2e-21 UniRef50_Q89B22 DNA-binding protein HU n=16 Tax=Bacteria RepID=D... 103 2e-21 UniRef50_A4WS11 Histone family protein DNA-binding protein n=1 T... 103 2e-21 UniRef50_A5CWF3 Integration host factor, alpha subunit n=2 Tax=s... 102 3e-21 UniRef50_D2BF20 Putative uncharacterized protein n=1 Tax=Strepto... 102 3e-21 UniRef50_B3EBV2 Histone family protein DNA-binding protein n=3 T... 102 3e-21 UniRef50_P29214 DNA-binding protein HU homolog n=6 Tax=cellular ... 102 3e-21 UniRef50_B5YLD8 Integration host factor alpha-subunit n=1 Tax=Th... 102 3e-21 UniRef50_C4XHM4 HU_IHF family transcriptional regulator n=1 Tax=... 102 3e-21 UniRef50_B7AFK0 Putative uncharacterized protein n=1 Tax=Bactero... 102 4e-21 UniRef50_Q01W44 Histone family protein DNA-binding protein n=3 T... 102 4e-21 UniRef50_UPI0001BC7A84 putative histone-like DNA-binding protein... 102 5e-21 UniRef50_B1Y0T8 Histone family protein DNA-binding protein n=6 T... 102 5e-21 UniRef50_B1Y4B9 Histone family protein DNA-binding protein n=6 T... 101 5e-21 UniRef50_C0QI67 IhfA n=1 Tax=Desulfobacterium autotrophicum HRM2... 101 6e-21 UniRef50_A0LI64 Histone family protein DNA-binding protein n=6 T... 101 6e-21 UniRef50_B8GX11 DNA-binding protein HU n=6 Tax=Caulobacteraceae ... 101 7e-21 UniRef50_C1D9R2 HupB2 n=1 Tax=Laribacter hongkongensis HLHK9 Rep... 101 8e-21 UniRef50_Q1NPH8 Histone-like bacterial DNA-binding protein n=4 T... 101 8e-21 UniRef50_Q1V2L3 Non-specific DNA-binding protein HBsu n=6 Tax=ro... 100 9e-21 UniRef50_B3R809 DNA-binding protein HU-beta, NS1 (HU-1), plays a... 100 1e-20 UniRef50_Q30VZ6 Histone-like DNA-binding protein n=1 Tax=Desulfo... 100 1e-20 UniRef50_A1WDL1 Histone family protein DNA-binding protein n=12 ... 100 1e-20 UniRef50_D1CFB6 Histone family protein DNA-binding protein n=1 T... 100 1e-20 UniRef50_C4K783 Integration host factor (IHF), DNA-binding prote... 100 2e-20 UniRef50_C8XUL7 Putative DNA-binding protein n=1 Tax=Shigella ph... 100 2e-20 UniRef50_A5EU64 Histone-like DNA-binding protein n=33 Tax=cellul... 100 2e-20 UniRef50_P17615 DNA-binding protein HB1 n=19 Tax=Actinobacterida... 100 2e-20 UniRef50_C7Q397 Histone family protein DNA-binding protein n=1 T... 100 2e-20 UniRef50_B7B856 Putative uncharacterized protein n=1 Tax=Parabac... 100 3e-20 UniRef50_Q0C4A3 DNA-binding protein HU n=3 Tax=Hyphomonadaceae R... 99 3e-20 UniRef50_A7V341 Putative uncharacterized protein n=4 Tax=Bactero... 99 4e-20 UniRef50_C6P6T8 Histone family protein DNA-binding protein n=1 T... 99 4e-20 UniRef50_D2Q2Y1 Histone family protein DNA-binding protein n=14 ... 99 5e-20 UniRef50_B2AK36 HU, DNA-binding transcriptional regulator, beta ... 98 6e-20 UniRef50_A6Q378 DNA-binding protein HU n=4 Tax=Epsilonproteobact... 98 7e-20 UniRef50_Q8UG61 Integration host factor subunit alpha n=29 Tax=A... 98 7e-20 UniRef50_C5B569 Putative integration host factor n=1 Tax=Methylo... 98 7e-20 UniRef50_P0A3H5 DNA-binding protein HU 1 n=43 Tax=Actinobacteria... 98 7e-20 UniRef50_Q92J57 DNA-binding protein HU n=10 Tax=spotted fever gr... 98 8e-20 UniRef50_Q1Q201 Putative uncharacterized protein n=1 Tax=Candida... 98 8e-20 UniRef50_B7CAU3 Putative uncharacterized protein n=1 Tax=Eubacte... 98 9e-20 UniRef50_B0NU55 Putative uncharacterized protein n=1 Tax=Bactero... 98 1e-19 UniRef50_B0UCA4 Histone family protein DNA-binding protein n=3 T... 98 1e-19 UniRef50_C9RKN2 Histone family protein DNA-binding protein n=1 T... 97 1e-19 UniRef50_C6XF17 Integration host factor subunit alpha n=1 Tax=Ca... 97 1e-19 UniRef50_A6LHR2 DNA-binding protein HU-beta n=3 Tax=Bacteroidale... 97 1e-19 UniRef50_B4UEN5 Histone family protein DNA-binding protein n=3 T... 97 2e-19 UniRef50_P73418 DNA-binding protein HU n=21 Tax=Cyanobacteria Re... 97 2e-19 UniRef50_B5ERD0 Histone family protein DNA-binding protein n=2 T... 97 2e-19 UniRef50_B7BF96 Putative uncharacterized protein n=1 Tax=Parabac... 97 2e-19 UniRef50_A1S612 DNA-binding protein, HU family n=2 Tax=Shewanell... 97 2e-19 UniRef50_C8QYJ3 Histone family protein DNA-binding protein n=1 T... 97 2e-19 UniRef50_B9XSG3 Histone family protein DNA-binding protein n=4 T... 97 2e-19 UniRef50_C2M9J7 DNA-binding protein HU n=1 Tax=Porphyromonas uen... 96 2e-19 UniRef50_A3EUM1 Putative histone-like DNA-binding protein n=2 Ta... 96 2e-19 UniRef50_Q1J3J9 Histone-like protein DNA-binding protein n=4 Tax... 96 3e-19 UniRef50_C0GE87 Histone family protein DNA-binding protein n=1 T... 96 3e-19 UniRef50_C6IB23 HU family DNA-binding protein n=6 Tax=Bacteroide... 96 3e-19 UniRef50_Q6KHG3 Bacterial nucleoid DNA-binding protein HU n=2 Ta... 96 3e-19 UniRef50_B9JPN0 Integration host factor alpha-subunit protein n=... 96 3e-19 UniRef50_O83278 DNA-binding protein HU n=2 Tax=Treponema pallidu... 96 3e-19 UniRef50_B5YH73 DNA-binding protein HU 1 n=1 Tax=Thermodesulfovi... 96 4e-19 UniRef50_C6IG13 Putative uncharacterized protein n=8 Tax=Bactero... 96 4e-19 UniRef50_Q9XB20 DNA-binding protein HU n=65 Tax=Bacteria RepID=D... 96 4e-19 UniRef50_A5VG36 Histone family protein DNA-binding protein n=2 T... 96 4e-19 UniRef50_Q2LW81 DNA-binding protein HU n=2 Tax=Proteobacteria Re... 96 5e-19 UniRef50_C9LHL9 Putative integration host factor IHF alpha subun... 95 5e-19 UniRef50_C6HU01 Histone family protein DNA-binding protein n=3 T... 95 5e-19 UniRef50_Q2NIZ7 DNA-binding protein HU n=3 Tax=Candidatus Phytop... 95 6e-19 UniRef50_Q1DCD2 DNA-binding protein HU n=2 Tax=Cystobacterineae ... 95 7e-19 UniRef50_C6X423 DNA-binding protein HU-beta n=3 Tax=Flavobacteri... 95 7e-19 UniRef50_Q72CZ7 DNA-binding protein HU, beta subunit n=2 Tax=Des... 95 8e-19 UniRef50_C7XFY9 Integration host factor, alpha subunit n=2 Tax=B... 95 8e-19 UniRef50_B8DRW9 Histone family protein DNA-binding protein n=11 ... 95 8e-19 UniRef50_A3ER44 Putative integration host factor, beta-subunit n... 94 9e-19 UniRef50_Q02ZW9 Nucleoid DNA-binding protein n=5 Tax=Lactococcus... 94 1e-18 UniRef50_Q1RHD4 DNA-binding protein HU n=5 Tax=Rickettsia RepID=... 94 1e-18 UniRef50_C7NGK9 Bacterial nucleoid DNA-binding protein n=1 Tax=K... 94 1e-18 UniRef50_UPI0001969776 hypothetical protein BACCELL_04916 n=1 Ta... 94 1e-18 UniRef50_O67923 Integration host factor beta subunit n=2 Tax=Aqu... 94 1e-18 UniRef50_C8X523 Histone family protein DNA-binding protein n=2 T... 94 1e-18 UniRef50_C4XGD8 HU_IHF family transcriptional regulator n=2 Tax=... 94 1e-18 UniRef50_C6XIY2 Histone family protein DNA-binding protein n=1 T... 94 1e-18 UniRef50_A1AQ83 Histone family protein DNA-binding protein n=1 T... 94 1e-18 UniRef50_Q4A5S4 Bacterial nucleoid DNA-binding protein n=1 Tax=M... 94 2e-18 UniRef50_B8DML6 Histone family protein DNA-binding protein n=5 T... 94 2e-18 UniRef50_Q98RC2 DNA-BINDING PROTEIN HU n=2 Tax=Mycoplasma RepID=... 94 2e-18 UniRef50_A6L5T8 DNA-binding protein HU n=2 Tax=Bacteroidales Rep... 94 2e-18 UniRef50_Q1GXQ0 Histone-like DNA-binding protein n=2 Tax=Proteob... 93 2e-18 UniRef50_A5ZCF1 Putative uncharacterized protein n=2 Tax=Bactero... 93 2e-18 UniRef50_B7B7U9 Putative uncharacterized protein n=1 Tax=Parabac... 93 3e-18 UniRef50_B2ICU5 Histone family protein DNA-binding protein n=2 T... 93 3e-18 UniRef50_C6HZV1 Putative integration host factor, alpha subunit ... 93 3e-18 UniRef50_A7AIP7 Putative uncharacterized protein n=2 Tax=Parabac... 93 3e-18 UniRef50_Q2SRR9 DNA-binding protein HU 1 n=5 Tax=Mollicutes RepI... 93 3e-18 UniRef50_B2UMR7 Histone family protein DNA-binding protein n=1 T... 93 3e-18 UniRef50_A6L5E9 Putative integration host factor IHF alpha subun... 92 3e-18 UniRef50_C4LBB5 Histone family protein DNA-binding protein n=1 T... 92 4e-18 UniRef50_A6W7Q9 Histone family protein DNA-binding protein n=1 T... 92 4e-18 UniRef50_C5VHN4 HimA protein n=9 Tax=Prevotella RepID=C5VHN4_9BACT 92 4e-18 UniRef50_Q9RZ89 DNA-binding protein HU n=2 Tax=Deinococcus RepID... 92 4e-18 UniRef50_B6WST8 Putative uncharacterized protein n=1 Tax=Desulfo... 92 4e-18 UniRef50_C9M6K0 DNA-binding protein HU n=2 Tax=Synergistaceae Re... 92 4e-18 UniRef50_Q9XB18 DNA-binding protein HU homolog n=36 Tax=Actinomy... 92 4e-18 UniRef50_A5CZA3 Bacterial nucleoid DNA-binding protein n=1 Tax=P... 92 4e-18 UniRef50_Q0BW86 DNA-binding protein HU n=1 Tax=Granulibacter bet... 92 4e-18 UniRef50_D0RNW1 Integration host factor subunit alpha (IHF-alpha... 92 4e-18 UniRef50_A4X4D0 Histone family protein DNA-binding protein n=24 ... 92 5e-18 UniRef50_C7N8X2 Histone family protein DNA-binding protein n=14 ... 92 5e-18 UniRef50_B3R0E2 Bacterial nucleoid DNA-binding protein n=1 Tax=C... 92 5e-18 UniRef50_Q4ZXI2 Histone-like bacterial DNA-binding protein n=22 ... 92 5e-18 UniRef50_B3C8S3 Putative uncharacterized protein n=1 Tax=Bactero... 92 5e-18 UniRef50_Q4FLU7 Bacterial DNA-binding protein n=3 Tax=Candidatus... 92 6e-18 UniRef50_C3JSK6 DNA-binding protein (Fragment) n=1 Tax=Rhodococc... 92 6e-18 UniRef50_C9YFH2 Integration host factor subunit beta n=2 Tax=Cur... 92 6e-18 UniRef50_Q02VJ4 Nucleoid DNA-binding protein n=2 Tax=Lactococcus... 92 6e-18 UniRef50_C0QP77 DNA-binding protein HU 1 (DNA-binding protein II... 92 6e-18 UniRef50_Q9ZHC5 DNA-binding protein HU homolog n=31 Tax=Bacteria... 92 6e-18 UniRef50_A6L5E8 DNA-binding protein HU n=9 Tax=Bacteroides RepID... 92 6e-18 UniRef50_Q0BZC9 DNA-binding protein HU n=1 Tax=Hyphomonas neptun... 92 7e-18 UniRef50_C0QR54 Histone family protein DNA-binding protein n=1 T... 92 7e-18 UniRef50_C7M6F9 Histone family protein DNA-binding protein n=11 ... 91 8e-18 UniRef50_B9K3N0 HNS-type DNA binding protein n=11 Tax=Alphaprote... 91 9e-18 UniRef50_A3EV93 Putative integration host factor, alpha subunit ... 91 1e-17 UniRef50_C6IN85 DNA-binding protein HU n=2 Tax=Bacteroides RepID... 91 1e-17 UniRef50_B9KZB7 DNA-binding protein HU 1 n=1 Tax=Thermomicrobium... 91 1e-17 UniRef50_C6I8R2 DNA-binding protein HU n=6 Tax=Bacteroidales Rep... 91 1e-17 Sequences not found previously or not previously below threshold: UniRef50_B8IKW1 Histone family protein DNA-binding protein n=1 T... 96 5e-19 UniRef50_UPI0001B4AA8F integration host factor, beta subunit n=1... 94 1e-18 UniRef50_A4S3Z3 Predicted protein n=2 Tax=Ostreococcus RepID=A4S... 94 2e-18 >UniRef50_Q9KDA5 DNA-binding protein HU-1 n=10 Tax=Bacteria RepID=DBH1_BACHD Length = 90 Score = 129 bits (324), Expect = 3e-29, Method: Composition-based stats. Identities = 37/90 (41%), Positives = 61/90 (67%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ + ++ LSK+DA + V+ FE I AL+ G +V+L GFG+F++R+++ R G Sbjct: 1 MNKTDLINAVAEQAELSKKDASKAVDAVFESITGALKEGGKVQLVGFGSFEVRERSARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TGE+I I A + F+PG++LK V Sbjct: 61 RNPQTGEEIEIPATKNPAFKPGKQLKDAVN 90 >UniRef50_P08821 DNA-binding protein HU 1 n=13 Tax=Bacteria RepID=DBH1_BACSU Length = 92 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 39/91 (42%), Positives = 62/91 (68%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + LSK+DA + V+ F+ I AL+NG++++L GFGNF++R+++ R G Sbjct: 1 MNKTELINAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE+I I A +V F+PG+ LK V Sbjct: 61 RNPQTGEEIEIPASKVPAFKPGKALKDAVAG 91 >UniRef50_C4LFG7 Integration host factor subunit alpha n=448 Tax=cellular organisms RepID=IHFA_TOLAT Length = 106 Score = 127 bits (321), Expect = 8e-29, Method: Composition-based stats. Identities = 81/99 (81%), Positives = 93/99 (93%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 MALTKA+++E+LF +LG+SKRDAKELVE FFE+IR ALE+GEQVK+SGFGNF+LR KN+R Sbjct: 1 MALTKADIAEHLFTELGISKRDAKELVETFFEDIRLALESGEQVKISGFGNFELRTKNER 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVE+A P DE Sbjct: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVEHARPVDE 99 >UniRef50_Q2W3I2 Bacterial nucleoid DNA-binding protein n=6 Tax=Bacteria RepID=Q2W3I2_MAGSA Length = 136 Score = 125 bits (315), Expect = 4e-28, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 52/90 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ + GLSK DA + V+ FE I AL+ G++V+L GFG F + + G Sbjct: 47 VNKNDLVTAVAGAAGLSKADAAKAVDGVFEAITSALKGGDEVRLVGFGTFAVASRAASEG 106 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TGE I I A + F+ G+ LK ++ Sbjct: 107 RNPRTGEKISIPASKQPKFKAGKGLKDGIQ 136 >UniRef50_Q87E48 DNA-binding protein HU n=403 Tax=cellular organisms RepID=DBH_XYLFT Length = 94 Score = 125 bits (314), Expect = 6e-28, Method: Composition-based stats. Identities = 37/93 (39%), Positives = 56/93 (60%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + LSK +A ++ EI AL+ G+ V L GFG F +R + +RPG Sbjct: 1 MNKTELIDGVAAAANLSKVEAGRAIDAVVNEITEALKEGDSVTLVGFGTFQVRQRAERPG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 RNPKTGE I I A +F+PG+ LK V++++ Sbjct: 61 RNPKTGEPIMIAASNNPSFKPGKALKDAVKSSA 93 >UniRef50_A1WUI6 Integration host factor subunit beta n=9 Tax=cellular organisms RepID=IHFB_HALHL Length = 102 Score = 125 bits (314), Expect = 6e-28, Method: Composition-based stats. Identities = 34/93 (36%), Positives = 60/93 (64%), Gaps = 1/93 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ E + K L+ +D ++ V+ E + L NG+++++ GFG+F L + R Sbjct: 1 MTKSELIEAIASKQPHLAHKDVEDAVKKMLEHMSETLANGKRIEIRGFGSFSLHHRPARM 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 GRNPKTGE + + A+ V F+PG++L+ RV ++ Sbjct: 61 GRNPKTGEPVALPAKYVPHFKPGKELRERVNSS 93 >UniRef50_Q5HFV0 DNA-binding protein HU n=74 Tax=Bacteria RepID=DBH_STAAC Length = 90 Score = 124 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 60/90 (66%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ + ++ L+K++A V+ FE I+ +L GE+V+L GFGNF++R++ R G Sbjct: 1 MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQNSLAKGEKVQLIGFGNFEVRERAARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TG++I I A +V F+ G+ LK V+ Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALKDAVK 90 >UniRef50_Q9K7K5 DNA-binding protein HU-1 n=51 Tax=root RepID=DBH2_BACHD Length = 90 Score = 123 bits (310), Expect = 1e-27, Method: Composition-based stats. Identities = 36/90 (40%), Positives = 59/90 (65%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + ++ +SK+DA E+V F+ I +L G+ V+L GFGNF++R++ R G Sbjct: 1 MNKTELIHQVAERTQMSKKDAGEVVNTVFDVIAESLAQGDSVQLIGFGNFEVRERAARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TGE+I I A + F+ G++LK V+ Sbjct: 61 RNPQTGEEIDIAATKTPAFKAGKQLKDAVK 90 >UniRef50_Q2KZM3 Integration host factor subunit alpha n=15 Tax=Proteobacteria RepID=IHFA_BORA1 Length = 116 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 64/98 (65%), Positives = 77/98 (78%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LTKAE++E LF+++GL+KR+AK++V+ FFEEIR AL G+ VKLSGFGNF +RDK RP Sbjct: 11 TLTKAELAELLFERVGLNKREAKDIVDTFFEEIREALARGDSVKLSGFGNFQVRDKPPRP 70 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 GRNPKTGE IPI ARRVVTF QKLKS VE + E Sbjct: 71 GRNPKTGETIPIAARRVVTFHASQKLKSTVEQSGNPAE 108 >UniRef50_C9KMW2 DNA-binding protein HU n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMW2_9FIRM Length = 91 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 59/90 (65%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + +K GL+K+DA++ V FE I++AL G++V++ GFG F++++++ R G Sbjct: 1 MNKNELVASVAEKAGLTKKDAEKAVGAIFESIQQALVEGDKVQVIGFGTFEVKERSARAG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+T E I I A + F+ G+ LK V Sbjct: 61 RNPRTNETIQIPASKNPAFKAGKALKDAVN 90 >UniRef50_Q1D6D8 Integration host factor subunit alpha n=24 Tax=Deltaproteobacteria RepID=IHFA_MYXXD Length = 129 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 47/97 (48%), Positives = 75/97 (77%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKA++ E +++K+G SK+++ E+VEL F+ ++ LE G+++K+SGFGNF +R K R G Sbjct: 1 MTKADIIEGVYEKVGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARVG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 RNP+TG++I I+ARRV+TFRP Q LKS + +P ++ Sbjct: 61 RNPQTGKEIEISARRVLTFRPSQVLKSALNGEAPPED 97 >UniRef50_P02348 DNA-binding protein HRL53 n=11 Tax=Proteobacteria RepID=DBH5_RHILE Length = 91 Score = 122 bits (306), Expect = 4e-27, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 52/91 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + +K GL+K DA V+ F+ ++ L+N ++L+GFG+F + + G Sbjct: 1 MNKNELVSAVAEKAGLTKSDAASAVDAVFDVVQAELKNKGDIRLAGFGSFTVSHRAATKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP TG ++ I AR V F PG+ LK V Sbjct: 61 RNPSTGAEVDIPARNVPKFTPGKGLKDAVNG 91 >UniRef50_B1I182 Histone family protein DNA-binding protein n=66 Tax=Bacteria RepID=B1I182_DESAP Length = 91 Score = 120 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 37/89 (41%), Positives = 59/89 (66%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ + +K L+K+DA++ + E IR AL G++V+L GFG F+ R++ R G Sbjct: 1 MNKAELISSVAEKTNLTKKDAEKALSAMLESIREALSAGDKVQLVGFGTFETRERAARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TGE+I I A +V F+ G++L+ V Sbjct: 61 RNPQTGEEIDIAATKVPVFKAGKELRESV 89 >UniRef50_Q3JBZ6 Integration host factor subunit alpha n=9 Tax=Bacteria RepID=IHFA_NITOC Length = 99 Score = 120 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 73/92 (79%), Positives = 86/92 (93%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 MALTKA+M+E L+ +LGL+KR+AKE+VE+FFE+IR ALE GE VKLSGFGNF+LRDK +R Sbjct: 1 MALTKADMTETLYQELGLNKREAKEIVEMFFEDIRCALEQGEAVKLSGFGNFELRDKGER 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 PGRNPKTGE+IPITARRVVTFRPGQKLK+RVE Sbjct: 61 PGRNPKTGEEIPITARRVVTFRPGQKLKARVE 92 >UniRef50_A5CWG6 DNA-binding protein HU-beta n=5 Tax=Bacteria RepID=A5CWG6_VESOH Length = 91 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 53/91 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+++ + L+K D+ ++ I AL +G+ V ++GFG+F +RD+ R G Sbjct: 1 MNKSDLVAVISQISNLTKADSARALDAMTGAITSALTSGDNVAITGFGSFVVRDRAARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE I I A +V F+ G+ LK V + Sbjct: 61 RNPQTGEAIQIKASKVPAFKAGKLLKESVNS 91 >UniRef50_A9IJJ1 Integration host factor subunit beta n=23 Tax=Proteobacteria RepID=IHFB_BORPD Length = 119 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 59/93 (63%), Gaps = 1/93 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ L + L+ RD V+ + + +AL +G+++++ GFG+F L ++ R Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRV 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 GRNPK+GE + + ++V F+ G++L+ RV+ A Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERVDLA 93 >UniRef50_Q12NT8 Integration host factor subunit alpha n=35 Tax=Gammaproteobacteria RepID=IHFA_SHEDO Length = 99 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 81/99 (81%), Positives = 91/99 (91%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 MALTKAEM+E+LF+ LGL+KR AKE+VE FFEEIR ALE+GEQVKLSGFGNFDLRDKNQR Sbjct: 1 MALTKAEMAEHLFETLGLNKRVAKEMVESFFEEIREALESGEQVKLSGFGNFDLRDKNQR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 PGRNPKTGEDIPI+ARRVVTFRPGQKLK+RVE A+ + Sbjct: 61 PGRNPKTGEDIPISARRVVTFRPGQKLKARVEAANSGKK 99 >UniRef50_Q2W5P8 Bacterial nucleoid DNA-binding protein n=9 Tax=Alphaproteobacteria RepID=Q2W5P8_MAGSA Length = 117 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 49/91 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ + + GLSK A +++ F I AL+ G+ V+L GFG+F + + + G Sbjct: 27 MNKQDLVNKVAELSGLSKAAADNVIDATFAAITSALKAGDDVRLVGFGSFSVTQRAAKEG 86 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TG I I A + F G+ LK V Sbjct: 87 RNPRTGATIKIAASKAPKFTAGKGLKDAVNG 117 >UniRef50_Q58KH1 ORF98 n=3 Tax=Leptospirillum RepID=Q58KH1_9BACT Length = 98 Score = 119 bits (298), Expect = 4e-26, Method: Composition-based stats. Identities = 36/92 (39%), Positives = 54/92 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ E + D LSK+D + +++ F I +L+ GE+V L GFG F+ K R G Sbjct: 1 MNKTELVESVSDSSHLSKKDVQAVLDGFLATIGDSLKKGEKVALVGFGTFETVKKEARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNP+TGE + I AR V F G+ L+ ++ A Sbjct: 61 RNPRTGEALEIPARTVPKFSAGKSLREAIDLA 92 >UniRef50_C8QX16 Histone family protein DNA-binding protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QX16_9DELT Length = 95 Score = 119 bits (298), Expect = 4e-26, Method: Composition-based stats. Identities = 41/93 (44%), Positives = 62/93 (66%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M LTKA++ + ++ + LSK A E+VE+F + +L+ GE + LSGFG F ++ KN R Sbjct: 1 MTLTKADLIQEVYQRHNLSKSQATEVVEIFLSVAKDSLQEGEDLLLSGFGKFSVKQKNSR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNP+TGE++ + RRV+TF+P L+ RV Sbjct: 61 RGRNPQTGEELMLAPRRVITFKPSGLLRQRVNG 93 >UniRef50_A7HPD7 Integration host factor subunit beta n=42 Tax=Proteobacteria RepID=IHFB_PARL1 Length = 110 Score = 119 bits (298), Expect = 4e-26, Method: Composition-based stats. Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 1/98 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K+E+ L L +RD + +V F+EI AL G++V+L GFG F ++ + R Sbjct: 1 MIKSELVARLAQANPHLYQRDVERIVSTIFDEISAALARGDRVELRGFGAFSVKSRPART 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 GRNP+TGE + + + V F+ G++L+ R+ NA D+ Sbjct: 61 GRNPRTGEPVHVDEKSVPFFKTGKELRERLNNADIADD 98 >UniRef50_B8GRS4 Integration host factor subunit beta n=17 Tax=Bacteria RepID=IHFB_THISH Length = 96 Score = 118 bits (296), Expect = 7e-26, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 58/96 (60%), Gaps = 1/96 (1%) Query: 3 LTKAEMSEYLFDK-LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ E L K L+ +D + V+ E + +AL G+++++ GFG+F L + R Sbjct: 1 MTKSELIEILARKQSHLAYKDVELSVKTMLEHLSQALATGDRIEIRGFGSFSLHFRPPRV 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97 GRNPKTGE + + + V F+PG++L+ RV + Sbjct: 61 GRNPKTGETVSLPGKYVPHFKPGKELRERVNAVHEQ 96 >UniRef50_Q01YK4 Histone family protein DNA-binding protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01YK4_SOLUE Length = 112 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 62/92 (67%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKA++ E + + +++++++ +VE F+ I R+L G+++++ GFG+F R + R G Sbjct: 1 MTKADLIEEVSRVVEMTRKESEVIVEAIFDSIVRSLRTGDKIEIRGFGSFRTRQRQPRIG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNPKTG + + A+++ F+P ++LK V N+ Sbjct: 61 RNPKTGARVEVPAKKIPYFKPSKELKDVVNNS 92 >UniRef50_Q9JR30 DNA-binding protein HU-beta 2 n=24 Tax=Bacteria RepID=DBHC_NEIMA Length = 91 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 37/91 (40%), Positives = 51/91 (56%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + + D+ LSKR A E V F + + L++G V L GFG F +R G Sbjct: 1 MNKSELIQAIADEAELSKRAAAEFVNAFVSVVTQELKDGNDVTLVGFGTFHAAQSAERQG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNPKTGE + I AR+ FR G+ LK V Sbjct: 61 RNPKTGEPLTIAARKTPKFRSGKALKDAVNG 91 >UniRef50_Q46Y54 Integration host factor subunit beta n=47 Tax=Proteobacteria RepID=IHFB_RALEJ Length = 137 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ E L + L RDA V+ + + AL +G ++++ GFG+F L + R Sbjct: 1 MTKSELVEKLAARFPQLLLRDADISVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNPK+GE + + +RV F+ G++L+ RV+ Sbjct: 61 GRNPKSGERVLVPEKRVPHFKAGKELRERVD 91 >UniRef50_Q5ZUE2 HupB DNA binding protein HU-beta n=19 Tax=Bacteria RepID=Q5ZUE2_LEGPH Length = 100 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 35/92 (38%), Positives = 56/92 (60%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + + GL+K DA ++E F + L+ G+QV + GFG+F +++ R G Sbjct: 9 MNKSELVDAIASGSGLTKADASRVLETFMATVTDVLKKGDQVVIPGFGSFSTGNRSARTG 68 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNP+TG+ I I A RV F+ G+ LK V+ A Sbjct: 69 RNPQTGKTIQIKASRVAKFKAGKNLKEAVQQA 100 >UniRef50_B6JCN9 Integration host factor subunit beta n=51 Tax=Alphaproteobacteria RepID=IHFB_OLICO Length = 106 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K+E+ + + + L +RD + +V EEI AL G++V+L GFG F ++ + R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVSALARGDRVELRGFGAFSVKHRPARA 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNP+TGE +P+ + V F+ G++++ R+ Sbjct: 61 GRNPRTGEHVPVEQKSVPFFKTGKEMRERLN 91 >UniRef50_P0A128 Integration host factor subunit beta n=99 Tax=Proteobacteria RepID=IHFB_PSEPK Length = 100 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 57/92 (61%), Gaps = 1/92 (1%) Query: 3 LTKAEMSEYLFDKLGL-SKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ E + GL S +D + ++ E++ + L G+++++ GFG+F L + R Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNPKTG+ + + + V F+PG++L+ RV Sbjct: 61 GRNPKTGQSVSLEGKFVPHFKPGKELRDRVNE 92 >UniRef50_Q1D6M8 Integration host factor, beta subunit n=3 Tax=Proteobacteria RepID=Q1D6M8_MYXXD Length = 127 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 59/93 (63%), Gaps = 1/93 (1%) Query: 3 LTKAEMSEYLFDK-LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T++E+ E + ++ + +R+ + +V FEE+ +AL G +++L GFG F +R + R Sbjct: 1 MTRSELIERIVERATHVPRREVEAIVHAVFEEMSQALIAGRRIELRGFGVFCVRTRRART 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 GRNPKTG+ + + ARR ++F G+ L+ R+ Sbjct: 61 GRNPKTGQRVSVPARRTLSFAAGKDLRERLNAP 93 >UniRef50_A6U5F1 Integration host factor subunit beta n=23 Tax=Alphaproteobacteria RepID=IHFB_SINMW Length = 103 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 56/98 (57%), Gaps = 1/98 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K+E+ + + + L RD + +V +EI AL G +V+L GFG F ++++ R Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 GRNP+TG+ + + + V F+ G++L+ R+ ++ Sbjct: 61 GRNPRTGDSVFVEEKWVPFFKTGKELRERLNPGMNGND 98 >UniRef50_Q2S2T0 DNA-binding protein HU n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2T0_SALRD Length = 100 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 36/99 (36%), Positives = 59/99 (59%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M++TKA++ + + D GL+K + + +VE F +R A++ G +++L FG F+++ + R Sbjct: 1 MSMTKADLIDQIADGTGLTKIETRAVVEGFMTAVRGAMKEGRRIELREFGVFEVQHRAPR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 GRNP+T E + I R FRP KL V+ A DE Sbjct: 61 TGRNPQTNEPVEIEDRYKPVFRPSDKLSEAVDAAHKADE 99 >UniRef50_P68573 SPBc2 prophage-derived DNA-binding protein HU 2 n=3 Tax=root RepID=DBH2_BACSU Length = 92 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 36/90 (40%), Positives = 58/90 (64%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + +K G+SK++ VE F+ I AL++GE+V + GFG F++R++ R G Sbjct: 1 MNKTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TGE+I I A + F+P + LK V+ Sbjct: 61 RNPQTGEEIDIPATKAPAFKPAKALKDAVK 90 >UniRef50_C1DAY8 HupB1 n=3 Tax=cellular organisms RepID=C1DAY8_LARHH Length = 89 Score = 115 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 53/89 (59%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + + L K A + ++ E + AL+ G+ V L GFG+F + ++ +R G Sbjct: 1 MNKSELIDAIAASADLPKAAAGKALDGMIEALTEALKKGDTVTLVGFGSFYVGERAERKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNPKTGE+I I + + FRPG+ LK + Sbjct: 61 RNPKTGEEITIPSAKTPKFRPGKALKDAL 89 >UniRef50_Q9KHS6 DNA-binding protein HU-beta n=61 Tax=Bacteria RepID=DBHB_PSEF5 Length = 90 Score = 115 bits (290), Expect = 4e-25, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 48/90 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + + L K A ++ E + AL+ G+ V L GFG F + D+ R G Sbjct: 1 MNKSELIDAIAASADLPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARIG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TG+ + I A + F+ G+ LK V Sbjct: 61 RNPQTGKTLEIAAAKKPGFKAGKALKEAVN 90 >UniRef50_Q9LA96 DNA-binding protein HU-alpha n=610 Tax=cellular organisms RepID=DBHA_AERHY Length = 90 Score = 115 bits (288), Expect = 5e-25, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 53/90 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KA++ + + K LSK AK +E I ++L+ G+ V+L GFG F + + R G Sbjct: 1 MNKAQLVDAIAAKADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVNHRAGRTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TG++I I A V +F G+ LK V+ Sbjct: 61 RNPQTGKEIQIAAANVPSFVAGKALKDAVK 90 >UniRef50_A1VR71 Integration host factor subunit alpha n=44 Tax=Burkholderiales RepID=IHFA_POLNA Length = 123 Score = 115 bits (288), Expect = 5e-25, Method: Composition-based stats. Identities = 51/94 (54%), Positives = 72/94 (76%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 ALTKA ++E LF+++GL+KR++KE+++ FFE I L G+ VK+SGFGNF +R K RP Sbjct: 12 ALTKAHLAELLFEQIGLNKRESKEMIDAFFELISDRLVEGKDVKISGFGNFQIRTKAPRP 71 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 GRNP+TGE IPI +RRVVTF KLK +++ ++ Sbjct: 72 GRNPRTGEAIPIESRRVVTFHASHKLKEQIQGSA 105 >UniRef50_Q8SME4 DNA-binding protein Hu homolog n=1 Tax=Cyanidioschyzon merolae RepID=Q8SME4_CYAME Length = 112 Score = 115 bits (288), Expect = 6e-25, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 56/95 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + +K+GLSK+ +E++ +I + L G++VKL GFG F + + R G Sbjct: 1 MDKTELISAVAEKVGLSKKQVREVINEILSQIAKQLVLGQKVKLVGFGTFSKQYRAARDG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97 RNP+TGE + I R VV F PG LK +V+ + Sbjct: 61 RNPRTGERLIIPERHVVVFSPGSDLKQQVQEPMQQ 95 >UniRef50_P43722 DNA-binding protein HU n=26 Tax=Bacteria RepID=DBH_HAEIN Length = 90 Score = 114 bits (287), Expect = 7e-25, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 53/90 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ + + + L+K+ AK +E + I +L+ GE V+L GFG F + ++ R G Sbjct: 1 MNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TG +I I A +V F G+ LK ++ Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAIK 90 >UniRef50_A5CCR4 Histone-like DNA-binding protein HU n=2 Tax=Orientia tsutsugamushi RepID=A5CCR4_ORITB Length = 125 Score = 114 bits (287), Expect = 7e-25, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 2 ALTKAEMSEYLFDK-LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 AL KAE ++ ++K D + + L + +A+ENG + + GFG+F +R + R Sbjct: 33 ALNKAEFVNFIHKNNTNMTKADIERALNLILRGVEKAIENGHDINIVGFGSFCVRFRAAR 92 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 G NPKTG I I V F+PG+ LK N Sbjct: 93 DGHNPKTGAKIIIPESYQVVFKPGKTLKDACNN 125 >UniRef50_B1A4K2 Integration host factor subunit A-like protein n=2 Tax=Gammaproteobacteria RepID=B1A4K2_9GAMM Length = 112 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 49/92 (53%), Positives = 64/92 (69%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M +T+ +++ YL D LG + +A+ +V+ FF++IR+ L GE+VKLSGFGNF LRDK R Sbjct: 1 MTVTRKDLAYYLADTLGFTVTEARTIVDRFFDQIRQTLAQGEEVKLSGFGNFVLRDKRAR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 PGRNPKT + ITARRVVTF Q LK Sbjct: 61 PGRNPKTKVPVEITARRVVTFHASQSLKGHCN 92 >UniRef50_Q2SY23 Integration host factor subunit beta n=94 Tax=Proteobacteria RepID=IHFB_BURTA Length = 107 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 1/92 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ L + L +DA V+ + + AL G ++++ GFG+F L + R Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNPK+GE + + + V F+PG++L+ RV+ Sbjct: 61 GRNPKSGEKVQVPEKHVPHFKPGKELRERVDG 92 >UniRef50_A4JQB1 Histone family protein DNA-binding protein n=4 Tax=Bacteria RepID=A4JQB1_BURVG Length = 92 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 48/92 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + G+SK DA + V+ + I A+ E V+L GFG F ++ R G Sbjct: 1 MNKQELIDAVAAGAGVSKSDASKTVQAVLDAITDAVSRDEAVQLIGFGAFSRGQRSARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNP TGE+I I A V F G+ K V + Sbjct: 61 RNPTTGEEIAIAAANTVKFAAGKAFKDAVNGS 92 >UniRef50_A3VQA5 Integration host factor subunit beta n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VQA5_9PROT Length = 113 Score = 113 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 57/94 (60%), Gaps = 1/94 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K+E+ + L + L +D ++LV F+ I ALE G++V+L GFG F ++ + R Sbjct: 1 MIKSELVQQLAAENPHLFMKDVEKLVSAIFDHISTALEQGDRVELRGFGTFSVKYREART 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 GRNP+TGE + + + V F+ G++++ R+ + Sbjct: 61 GRNPRTGESVEVEEKWVPFFKAGKEMRERLNKKT 94 >UniRef50_A1AW42 Histone family protein DNA-binding protein n=4 Tax=Bacteria RepID=A1AW42_RUTMC Length = 91 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 52/91 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + + LSK DA + + I A+ + + V+L+GFG+F +R++ R G Sbjct: 1 MNKSELIDAIALAANLSKVDASRALNATTDAITGAMASSDGVQLTGFGSFVVRNRAARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TG I I A +V F+ G+ LK V Sbjct: 61 RNPQTGATIQIKASKVAAFKAGKALKEAVNK 91 >UniRef50_Q0AI99 Histone family protein DNA-binding protein n=42 Tax=Bacteria RepID=Q0AI99_NITEC Length = 90 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 48/90 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ E + ++K +A ++ I+ AL + V L GFG F + ++ R G Sbjct: 1 MNKSELIEAIARHADITKAEAGNALDGALSAIKDALSKNDSVTLVGFGTFKVGERAARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TG +I I A +V F G+ LK V Sbjct: 61 RNPRTGAEIKIKAAKVPKFTAGKALKDAVN 90 >UniRef50_A4G858 Integration host factor subunit beta n=15 Tax=Proteobacteria RepID=IHFB_HERAR Length = 101 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 57/91 (62%), Gaps = 1/91 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ L ++ L +DA V+ + + AL G+++++ GFG+F L + R Sbjct: 1 MTKSELIARLAERYPQLVAKDADYAVKTILDAMSDALATGQRIEIRGFGSFALNSRPPRI 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNPK+G+ + + +RV F+PG++L+ RV+ Sbjct: 61 GRNPKSGDKVMVPEKRVPHFKPGKQLRERVD 91 >UniRef50_Q0AIZ2 Integration host factor subunit beta n=53 Tax=Proteobacteria RepID=IHFB_NITEC Length = 105 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 62/97 (63%), Gaps = 1/97 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ L ++ L +DA+ +V++ + + ++L GE++++ GFG+FDL + R Sbjct: 1 MTKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLARGERIEIRGFGSFDLNYRPSRV 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKD 98 GRNPK+GE + + + V F+ G+K++ ++++ + Sbjct: 61 GRNPKSGEKVHVPEKYVPHFKAGKKMRELIDSSHKQH 97 >UniRef50_A1VFK7 Histone family protein DNA-binding protein n=3 Tax=Desulfovibrio vulgaris RepID=A1VFK7_DESVV Length = 91 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 3 LTKAEMSEYLFDKLGL-SKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TKAE+ E + K GL +K A+ ++ + A+ GE V +GFG+F + D+ R Sbjct: 1 MTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAARK 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNP+TGE+I I A +VV F PG+ LK V+ Sbjct: 61 GRNPRTGEEIVIPAGKVVKFTPGKLLKDAVK 91 >UniRef50_Q3A4K6 BHL, histone-like protein n=10 Tax=Deltaproteobacteria RepID=Q3A4K6_PELCD Length = 92 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 58/92 (63%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + L +K GL+ + A+E+V + + + L G ++++ GFG+ ++D G Sbjct: 1 MNKSELIDALAEKKGLTYKRAEEIVNIVLDTMSDTLVEGGRIEIRGFGSLVVKDYKAYIG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNPKTGE+I + +++ F+ G++L+ R+ + Sbjct: 61 RNPKTGEEIEVKPKKLPFFKVGKELRERINKS 92 >UniRef50_Q9HTL0 DNA-binding protein HU-alpha n=33 Tax=Bacteria RepID=DBHA_PSEAE Length = 90 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 49/90 (54%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E++ + +K L+K A ++ +EI AL + V L GFG F R + R G Sbjct: 1 MRKPELAAAIAEKADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 +NP+TG+ + I A V F+PG+ L+ V Sbjct: 61 KNPQTGQPVKIKASNTVAFKPGKALRDAVN 90 >UniRef50_C0RGK7 Integration host factor subunit beta n=44 Tax=Alphaproteobacteria RepID=IHFB_BRUMB Length = 94 Score = 112 bits (280), Expect = 4e-24, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 56/93 (60%), Gaps = 1/93 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K+E+ + + + L +RD +V F+EI AL G +V+L GFG F ++++ R Sbjct: 1 MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 GRNP+TGE + + + V F+ G+KL+ R+ A Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRLNGA 93 >UniRef50_A6TJN4 Histone family protein DNA-binding protein n=11 Tax=Clostridiales RepID=A6TJN4_ALKMQ Length = 92 Score = 112 bits (280), Expect = 4e-24, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KA++ + +K L+K+DA+ + F E + AL +G++V+L GFG F++R++ R G Sbjct: 1 MNKADLVAKMAEKSELTKKDAELALNSFMESVEEALVDGDKVQLVGFGTFEVRERKPRQG 60 Query: 63 RNPKTGED-IPITARRVVTFRPGQKLKSRVE 92 RNP+ E I I A + F+ G+ LK ++ Sbjct: 61 RNPRNPEQVIEIPASKAPVFKAGKTLKEKIN 91 >UniRef50_D1RMX6 DNA-binding protein HU-beta n=1 Tax=Legionella longbeachae D-4968 RepID=D1RMX6_LEGLO Length = 92 Score = 112 bits (280), Expect = 5e-24, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 48/91 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + GLSK D++ + + L G+ + L GF + +++ R G Sbjct: 1 MNKKELIAAISNTSGLSKTDSETALNAVISCLTELLAKGDSIVLPGFASLSVKEHPARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP TG+ I I A +VV+F+ G KLK + Sbjct: 61 RNPSTGQPIEIAASKVVSFKTGTKLKEAING 91 >UniRef50_A4SLS6 Integration host factor subunit beta n=17 Tax=Gammaproteobacteria RepID=IHFB_AERS4 Length = 94 Score = 112 bits (280), Expect = 5e-24, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 59/91 (64%), Gaps = 1/91 (1%) Query: 3 LTKAEMSEYLFD-KLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+++ E L ++ + +D + ++ E++ L+NG+++++ GFG+F L + R Sbjct: 1 MTKSDLIEQLAASRMHMPAKDVEAAIKEILEQMASTLQNGDRIEIRGFGSFSLHYRAPRV 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNPKTG+ + +T + V F+PG++L+ RV Sbjct: 61 GRNPKTGDKVELTGKYVPHFKPGKELRERVN 91 >UniRef50_B2IE05 Histone family protein DNA-binding protein n=2 Tax=Alphaproteobacteria RepID=B2IE05_BEII9 Length = 171 Score = 112 bits (280), Expect = 5e-24, Method: Composition-based stats. Identities = 37/93 (39%), Positives = 58/93 (62%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 + +T+ +++ ++D +G+S++DA LV EI AL GE V+L+ FGNF++R K QR Sbjct: 70 ITVTRKDLASSVYDCIGISRKDADRLVTEVLSEITEALVRGENVRLASFGNFEIRAKTQR 129 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNP+TG I RRV+ F+ + L R+ Sbjct: 130 IGRNPRTGVAAVIPPRRVLKFKASKVLLDRLNG 162 >UniRef50_B6IUP4 Integration host factor subunit beta n=22 Tax=Proteobacteria RepID=IHFB_RHOCS Length = 93 Score = 112 bits (280), Expect = 5e-24, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 59/92 (64%), Gaps = 1/92 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ L ++ L +RD +++V F+EI AL G++V+L GFG F ++ ++ R Sbjct: 1 MTKSELILRLAERNPHLYQRDVEKIVTTIFDEITDALARGDRVELRGFGAFSVKKRDARL 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNP+TGE + + + + F+ G++L+ R+ Sbjct: 61 GRNPRTGETVDVNQKFIPFFKTGKQLRERLNT 92 >UniRef50_C4K6F1 HU, DNA-binding transcriptional regulator, alpha subunit-3 n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K6F1_HAMD5 Length = 114 Score = 111 bits (279), Expect = 5e-24, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 53/92 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KA++ + + + G++K A ++ + + I +L+ E V+L GFG F+++ ++ R Sbjct: 1 MNKAQLIDEIAENAGITKIKANTVLNIILDRITESLKKHESVQLVGFGTFNVKHRDARNA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNP+TGE I + A V + + LK ++ + Sbjct: 61 RNPQTGEPIELPACYVPSLNFAKALKDALKGS 92 >UniRef50_Q7WDC5 Histone-like DNA-binding protein n=1 Tax=Bordetella bronchiseptica RepID=Q7WDC5_BORBR Length = 93 Score = 111 bits (279), Expect = 6e-24, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 48/92 (52%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M+LTK ++ L + G S+RD + +V++ I L GE+ L G G F + R Sbjct: 1 MSLTKKDLIATLSYETGFSRRDTENMVDVLTSTISEQLIAGEEFTLPGVGKFSTSQRAAR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNP+TGE + I A V F + LK +V Sbjct: 61 TGRNPQTGEPVEIAASVAVKFSASKTLKDQVN 92 >UniRef50_Q9XB22 DNA-binding protein HU n=33 Tax=Firmicutes RepID=DBH_STRDO Length = 91 Score = 111 bits (279), Expect = 6e-24, Method: Composition-based stats. Identities = 34/89 (38%), Positives = 54/89 (60%) Query: 4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGR 63 K ++ + + L+K+D+ V+ F I L GE+V+L GFGNF++R++ R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDTVFSSIEGFLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 64 NPKTGEDIPITARRVVTFRPGQKLKSRVE 92 NP+TG +I I A +V F+ G+ LK V+ Sbjct: 63 NPQTGAEIKIAASKVPAFKAGKALKDAVK 91 >UniRef50_Q5LQJ4 Integration host factor subunit alpha n=14 Tax=Alphaproteobacteria RepID=IHFA_SILPO Length = 100 Score = 111 bits (278), Expect = 7e-24, Method: Composition-based stats. Identities = 47/96 (48%), Positives = 66/96 (68%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LT+ ++SE +F ++GLS+ ++ +LVE + AL GEQVK+S FG F +RDK+ R Sbjct: 5 TLTRMDLSEAVFREVGLSRNESAQLVESMLNHMSDALVRGEQVKISSFGTFSVRDKSARV 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97 GRNPKTGE++PI RRV+TFRP +K RV + K Sbjct: 65 GRNPKTGEEVPIQPRRVLTFRPSHLMKERVAAGNRK 100 >UniRef50_P0A3I2 Integration host factor subunit beta n=3 Tax=Agrobacterium tumefaciens RepID=IHFB_AGRT9 Length = 102 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K+E+ +++ K L +RDA+ V+ +EI ALE GE+V + FG F +R + R Sbjct: 1 MIKSELVDFVAAKNPYLHRRDAENAVDAVLDEITGALERGERVDIRSFGTFVVRHRPARS 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 GRNP G + I + V FR G++++ R+ A Sbjct: 61 GRNPLNGNAVFIEEKWVPFFRAGKEIRDRLNTA 93 >UniRef50_P05385 DNA-binding protein HU n=38 Tax=Bacteria RepID=DBH_CLOPA Length = 91 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 36/91 (39%), Positives = 56/91 (61%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ + +K L+K+DA+ ++ E + ALE GE+V+L GFG F+ R++ R G Sbjct: 1 MNKAELITSMAEKSKLTKKDAELALKALIESVEEALEKGEKVQLVGFGTFETRERAAREG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+T E I I A V F+ G++ K +V Sbjct: 61 RNPRTKEVINIPATTVPVFKAGKEFKDKVNK 91 >UniRef50_Q2J6X1 Histone-like DNA-binding protein n=4 Tax=Frankia RepID=Q2J6X1_FRASC Length = 94 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 57/93 (61%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+++ + + ++ + +A + V+ F+ I+ A+ +GE+V ++GFG F+ ++ R G Sbjct: 1 MNKSQLVDRIAQQIEGGRSNATKAVDAVFDAIQEAVASGEKVTITGFGVFERVERAARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 RNP TGE + + A V FRPG + KS V ++ Sbjct: 61 RNPATGEPVHVAASVVPKFRPGSEFKSSVSASN 93 >UniRef50_A8LLT5 Integration host factor subunit alpha n=28 Tax=Alphaproteobacteria RepID=IHFA_DINSH Length = 101 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 45/94 (47%), Positives = 65/94 (69%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LT+ ++S+ +F ++GLS+ ++ +LVE + AL GE VK+S FG F +RDK+ R Sbjct: 5 TLTRMDLSDAVFREVGLSRNESAQLVESILTHMSDALVRGESVKISSFGTFSVRDKSARI 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 GRNPKTGE++PI RRV+TFRP +K RV N + Sbjct: 65 GRNPKTGEEVPIHPRRVLTFRPSHLMKERVANGN 98 >UniRef50_Q9ZF89 DNA-binding protein HU-alpha n=51 Tax=Bacteria RepID=DBHA_BURPS Length = 92 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 49/91 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + + G SK E ++ E I++A+ G+ V+L GFG+F + R G Sbjct: 1 MNKQELIDAVAAQTGASKAQTGETLDTLLEVIKKAVSKGDSVQLIGFGSFGSGKRAARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNPKTGE I I A + V F G+ K V Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFKDAVNK 91 >UniRef50_B8FAQ7 Histone family protein DNA-binding protein n=6 Tax=Deltaproteobacteria RepID=B8FAQ7_DESAA Length = 97 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 44/93 (47%), Positives = 63/93 (67%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 MALTKA++ E + ++LGL + +VE E I+ +LENG+ V +SGFG F +RDK+QR Sbjct: 1 MALTKAQIVEEIHNQLGLPAKQCATMVEDLLEIIKSSLENGDDVLISGFGKFRVRDKSQR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNP TG+ I + AR+VVTF L+ R+ + Sbjct: 61 RGRNPATGDSIILDARKVVTFTCSGVLRDRINS 93 >UniRef50_Q39VS3 Histone-like DNA-binding protein n=5 Tax=Deltaproteobacteria RepID=Q39VS3_GEOMG Length = 91 Score = 110 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 45/91 (49%), Positives = 72/91 (79%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKA++ E +++K+G SK+++ ELVE F I+ LENGE++K++GFGNF +++K R G Sbjct: 1 MTKADIVEQIYEKVGFSKKESAELVERVFGLIKETLENGEKIKIAGFGNFVVKEKADRRG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TG++I I+ARR++TF+P Q LKS + + Sbjct: 61 RNPQTGDEIIISARRILTFKPSQVLKSSINS 91 >UniRef50_Q5P3H7 DNA-binding protein hu-alpha n=3 Tax=Bacteria RepID=Q5P3H7_AZOSE Length = 92 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 51/91 (56%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E E L D+L +S+ A + + I + GE+V +GFG+F++ ++ +R G Sbjct: 1 MNKGEFVEALADRLDVSRAQADRALSTVLDIIVERMAAGEKVAFTGFGSFEVSERAERTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TG I I A RV F G LK+ + + Sbjct: 61 RNPQTGASIKIAASRVPKFSAGATLKTAINS 91 >UniRef50_C3KW90 DNA-binding protein HU n=13 Tax=Bacteria RepID=C3KW90_CLOB6 Length = 93 Score = 109 bits (274), Expect = 3e-23, Method: Composition-based stats. Identities = 36/91 (39%), Positives = 59/91 (64%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + +K L+K+DA+ ++ F E + ALE GE+V+L GFG F+ R++ +R G Sbjct: 1 MNKSELITSMAEKSKLTKKDAETALKAFIESVEEALEGGEKVQLVGFGTFETRERAERVG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+T E+I I A F+ G++LK +V Sbjct: 61 RNPRTKEEITIPASIAPVFKAGKELKEKVNK 91 >UniRef50_C0QI36 IhfB n=3 Tax=Deltaproteobacteria RepID=C0QI36_DESAH Length = 91 Score = 109 bits (274), Expect = 3e-23, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 57/90 (63%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ L + L+K +A E+VE+FF+ + AL N E+V++ G +F +++ G Sbjct: 1 MNKLELISVLKQRADLTKTEAAEIVEIFFDSLTEALANDERVEIRGLCSFFIKEYKSYTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNPKTG + I A+++ F+ G++LK RV+ Sbjct: 61 RNPKTGAKVTIPAKKLPFFKCGKELKERVD 90 >UniRef50_UPI0001693F3B DNA-binding protein HU n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693F3B Length = 114 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 53/90 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ E + G SK++A++ V + I AL+ G++V+L GFG FD+R + R G Sbjct: 23 MNKEQLVEVVAKSSGFSKKNAEKAVTHVLDSIFEALKQGKEVQLVGFGKFDVRSREARMG 82 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RN KTGE++ + A +V F G LK + Sbjct: 83 RNRKTGEEVELPAGKVPVFTAGITLKKALN 112 >UniRef50_Q12ND8 Integration host factor subunit beta n=185 Tax=Gammaproteobacteria RepID=IHFB_SHEDO Length = 95 Score = 109 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 58/94 (61%), Gaps = 1/94 (1%) Query: 3 LTKAEMSEYLF-DKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ E L + LS ++ + ++ E++ LE G+++++ GFG+F L + R Sbjct: 1 MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMATTLEGGDRIEIRGFGSFSLHYRAPRT 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 GRNPKTG + + + V F+PG++L+ RV+ + Sbjct: 61 GRNPKTGTSVELDGKYVPHFKPGKELRERVDAVN 94 >UniRef50_Q4FQ67 Integration host factor subunit alpha n=10 Tax=Gammaproteobacteria RepID=IHFA_PSYA2 Length = 99 Score = 109 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 50/92 (54%), Positives = 73/92 (79%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LTK++M E+L L L++++ + LVE FF+E+ +L +G++VKLSGFGNF+L+DKN RP Sbjct: 3 TLTKSDMIEHLMSHLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKNSRP 62 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNPKTGE + ++ARRVVTF+ GQK + +V+ Sbjct: 63 GRNPKTGEPVAVSARRVVTFKTGQKFRQQVDE 94 >UniRef50_Q2IWQ7 Integration host factor subunit alpha n=17 Tax=Rhizobiales RepID=IHFA_RHOP2 Length = 123 Score = 108 bits (271), Expect = 5e-23, Method: Composition-based stats. Identities = 43/91 (47%), Positives = 62/91 (68%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T+ ++ E ++ K+GLS+ ++ VEL +EI LE GE VKLS FG+F +R K QR Sbjct: 7 TVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVRQKGQRI 66 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNPKTG ++PI+ RRV+ F+P LK R+ Sbjct: 67 GRNPKTGTEVPISPRRVMVFKPSAILKQRIN 97 >UniRef50_Q65SH8 Integration host factor subunit beta n=19 Tax=Proteobacteria RepID=IHFB_MANSM Length = 94 Score = 108 bits (271), Expect = 5e-23, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 59/91 (64%), Gaps = 1/91 (1%) Query: 3 LTKAEMSEYLFDK-LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ E L +K +S + + V+ E + +ALE+G+++++ GFG+F L + R Sbjct: 1 MTKSELIESLVEKNHSISVKSVENAVKEILEHMSQALESGDRIEIRGFGSFSLHFRQPRV 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNPKTG + + A+ V F+ G++L+ RV+ Sbjct: 61 GRNPKTGAQVKLDAKCVPHFKAGKELRERVD 91 >UniRef50_C5B6T6 Integration host factor (IHF) like DNA-binding protein n=8 Tax=Rhizobiales RepID=C5B6T6_METEA Length = 163 Score = 108 bits (271), Expect = 5e-23, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 1/95 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + ++E+ L + L ++D + +V I AL G++V++ GFG F +D R Sbjct: 59 MIRSELVTRLAAQNPHLYEKDCEAVVSAVLARIEDALVAGDRVEIRGFGAFSTKDIRARQ 118 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASP 96 GRNP+TGE + + ++ V FRPG+ ++ R++ +P Sbjct: 119 GRNPRTGESVLVAEKKAVQFRPGKGMRQRLKAMTP 153 >UniRef50_C4K4H0 DNA-binding protein HU-alpha (HU-2) n=2 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K4H0_HAMD5 Length = 119 Score = 108 bits (271), Expect = 6e-23, Method: Composition-based stats. Identities = 39/96 (40%), Positives = 51/96 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ E + DK GL+K + E V F I AL E V++ FG F +R + +R Sbjct: 1 MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIEALGKKEPVQIIRFGTFKVRHRKERIS 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKD 98 RNPKTGE I AR V F G+ LK V +PK Sbjct: 61 RNPKTGEKIKTPAREVAVFSAGKSLKDSVHLQAPKQ 96 >UniRef50_Q6AJG8 Probable integration host factor, alpha-subunit n=1 Tax=Desulfotalea psychrophila RepID=Q6AJG8_DESPS Length = 94 Score = 108 bits (270), Expect = 6e-23, Method: Composition-based stats. Identities = 41/93 (44%), Positives = 63/93 (67%), Gaps = 1/93 (1%) Query: 1 MALTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQ 59 M LTKA++ + ++ K GL+K A E VE F + AL +G + LSGFG F+++DK+ Sbjct: 1 MTLTKADLIQQVYKKHEGLTKAQATESVEAFLRISKDALISGSDLLLSGFGKFNVKDKSS 60 Query: 60 RPGRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 R GRNP+TG+++ + ARRVVTF+P L+ ++ Sbjct: 61 RRGRNPQTGDELTLEARRVVTFKPSGILRDKIN 93 >UniRef50_A9AXB4 Histone family protein DNA-binding protein n=3 Tax=Chloroflexi (class) RepID=A9AXB4_HERA2 Length = 95 Score = 108 bits (270), Expect = 6e-23, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 52/94 (55%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E + ++ G+SK++A+ +V+ + + L+ GE+V L+GFG F++R++ R G Sbjct: 1 MQKIEFIAEVAERTGISKKEARRVVDAMLDVVSERLQAGEKVVLTGFGTFEVRERQARQG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASP 96 NPKT E + I A + F LK V P Sbjct: 61 VNPKTRERMTIEATKTPGFSASNSLKLLVRQGKP 94 >UniRef50_D1A9C1 Histone family protein DNA-binding protein n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A9C1_THECD Length = 159 Score = 108 bits (270), Expect = 7e-23, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 44/91 (48%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + + E+ E + G A+ V+ FE I + GE+V ++GFG FD + R Sbjct: 1 MNRTELIEAVAALAGSDPAVARRHVDAVFETIMDRVTAGERVLVTGFGTFDKLSRPARTA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE + + FR GQ K RV Sbjct: 61 RNPRTGEPVEVPPTETPRFRAGQTFKDRVAG 91 >UniRef50_Q3J6Y8 Histone-like DNA-binding protein n=2 Tax=Nitrosococcus oceani RepID=Q3J6Y8_NITOC Length = 94 Score = 107 bits (269), Expect = 9e-23, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 50/91 (54%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ ++ K LS+ A+ V F+ I L +V L GFG+F ++ + R G Sbjct: 1 MNKTELVNFVVLKANLSQATAQRAVNALFQTITGVLSEEGRVNLVGFGSFSVQKRAARSG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 R+P++GE I I A+ TF+P + LK V+ Sbjct: 61 RHPQSGEVIIIQAKSAPTFKPSKALKEIVQQ 91 >UniRef50_A0L640 HU family DNA-binding protein n=19 Tax=root RepID=A0L640_MAGSM Length = 91 Score = 107 bits (269), Expect = 9e-23, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 50/91 (54%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + E+ + + DK G+S+ DA V E I +L V L GFG F + ++ R G Sbjct: 1 MNLGELKKIVADKTGMSQADAGRAVAATLEAISESLGQSATVSLLGFGTFSVGERAAREG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE I I+A R + F+ GQ L+ +V Sbjct: 61 RNPQTGEKINISASRTIRFKAGQSLREKVNG 91 >UniRef50_B8H6A5 Integration host factor subunit beta n=10 Tax=cellular organisms RepID=IHFB_CAUCN Length = 96 Score = 107 bits (269), Expect = 9e-23, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 57/91 (62%), Gaps = 1/91 (1%) Query: 3 LTKAEMSEYLF-DKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K+E+ L + L+++D + +V + E + ALE+G +V+L GFG +R + R Sbjct: 1 MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPART 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNP+TGE + + A+ V F+ G++L++R+ Sbjct: 61 GRNPRTGEAVDVRAKHVPFFKSGKELRARLN 91 >UniRef50_A7AXT3 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7AXT3_RUMGN Length = 92 Score = 107 bits (269), Expect = 9e-23, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 61/91 (67%), Gaps = 1/91 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T++++ + + +K+ G+++ AKE+V + + I AL G++V+ GFG+F++R++ R Sbjct: 1 MTRSDLIKTIAEKVDGVTQEKAKEIVAVTLDSIADALTAGDKVQFVGFGSFEVRERAGRT 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNP+ G +I I + V F+ G++LK +V Sbjct: 61 GRNPQDGSEIYIEPSKNVKFKAGKELKDKVN 91 >UniRef50_Q6ANC3 Related to integration host factor, alpha subunit n=2 Tax=Deltaproteobacteria RepID=Q6ANC3_DESPS Length = 103 Score = 107 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 42/91 (46%), Positives = 60/91 (65%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 LT+ E++E L +LG S+ E+V+ F +++ AL GE +KL FG F +RDK R G Sbjct: 13 LTRKEIAEELTGQLGYSQNICSEIVDSFLGKMKDALIEGESIKLVHFGTFTVRDKAPRTG 72 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE I IT R+ V+FRP +KL+ +V Sbjct: 73 RNPRTGEPITITKRQAVSFRPSKKLREQVNE 103 >UniRef50_C1A906 DNA-binding protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A906_GEMAT Length = 110 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 57/97 (58%), Gaps = 6/97 (6%) Query: 3 LTKAEMSE----YLFDKLG--LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRD 56 +TKA++ E + G +SK+D +V+ F + I+ AL+ + +++ GFG F +R Sbjct: 1 MTKADLVENVTARIAQTAGPTISKKDCARVVDAFLDAIKEALQEQKNIEVRGFGTFKIRQ 60 Query: 57 KNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 + R RNP+TG + ++AR V F+P ++L++ V Sbjct: 61 RKTRMARNPRTGSPVEVSARPVPVFKPSKELRAMVAG 97 >UniRef50_D2QWH5 Histone family protein DNA-binding protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QWH5_9PLAN Length = 180 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 59/92 (64%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK E+ + + +++GL++ KE+V+ F+ I L +++L FG F+++++ R Sbjct: 56 VVTKKEIVKTISEEIGLTQLKTKEIVQKTFDAIVETLVEERRIELRNFGVFEVKERAARK 115 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TG+ + + + VVTF+PG++++ +V Sbjct: 116 ARNPRTGQPVYVAEKFVVTFKPGKEMEEKVRQ 147 >UniRef50_Q0AZ79 Bacterial nucleoid protein Hbs n=15 Tax=Bacteria RepID=Q0AZ79_SYNWW Length = 110 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 60/85 (70%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + L +K ++++DA ++++ E I++AL G++V++ GFG+F++RD+ +R Sbjct: 1 MNKSELVKSLAEKAEITQKDAAKVLDALVESIQQALAGGDKVQIIGFGSFEVRDRKERKV 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKL 87 +P TG++I + A +V F+PG+ L Sbjct: 61 ISPATGKEITVPATKVPAFKPGKSL 85 >UniRef50_A4YW83 Integration host factor subunit alpha n=41 Tax=Alphaproteobacteria RepID=IHFA_BRASO Length = 119 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 43/92 (46%), Positives = 62/92 (67%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T+ ++ E ++ K+GLS+ ++ VEL +EI LE GE VKLS FG+F +R K QR Sbjct: 7 TVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVRKKGQRI 66 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNPKTG ++PI+ RRV+ F+P LK R+ Sbjct: 67 GRNPKTGTEVPISPRRVMVFKPSAILKQRING 98 >UniRef50_A4A2Z0 Probable DNA-binding protein HU n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A2Z0_9PLAN Length = 159 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 58/92 (63%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK E+ + + +++GL++ KE+V+ F I L +++L FG F+++ + R Sbjct: 19 VVTKKEIVKTISEEIGLTQLKTKEIVQKTFNAIVDTLVEDGRIELRNFGVFEVKKRAARK 78 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE + + ++ VVTF+PG++++ RV Sbjct: 79 ARNPRTGEKVYVPSKFVVTFKPGKEMEERVRQ 110 >UniRef50_B4S407 Histone family protein DNA-binding protein n=14 Tax=Chlorobiaceae RepID=B4S407_PROA2 Length = 103 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 59/91 (64%) Query: 4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGR 63 TKA++ + GL+K + + +V+ FE I +L+ G+++++ GFG+F++R KN+R R Sbjct: 6 TKADLVNTISHTTGLTKHETEAVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKNERLAR 65 Query: 64 NPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 NP+TGE + + A+ V TF+ ++ K V + Sbjct: 66 NPRTGEKVSVEAKNVPTFKISKEFKHAVSQS 96 >UniRef50_C1ZKD3 Bacterial nucleoid DNA-binding protein n=2 Tax=Planctomycetaceae RepID=C1ZKD3_PLALI Length = 171 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 58/91 (63%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK E+ + + D++GL++ KE+V+ F+ I L +++L FG F+++ + R Sbjct: 1 MTKKEIVKAISDEIGLTQLKTKEIVQKTFDAIVETLVADGRIELRNFGVFEVKKRAARKA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TG+ + + + VVTF+PG++++ +V Sbjct: 61 RNPRTGDKVFVPEKFVVTFKPGKEMEEKVRQ 91 >UniRef50_B2RHA9 DNA-binding protein HU n=2 Tax=Porphyromonas gingivalis RepID=B2RHA9_PORG3 Length = 88 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 32/85 (37%), Positives = 48/85 (56%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K + + +K L+K DA+ V F E + + GE++ L GFG F + ++ R G Sbjct: 1 MNKTDFIAAVAEKANLTKADAQRAVNAFAEVVTEQMNAGEKIALIGFGTFSVSERAARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKL 87 NPKT + I I AR+VV F+PG L Sbjct: 61 INPKTKKSISIPARKVVRFKPGSTL 85 >UniRef50_P0A3H3 DNA-binding protein HRL18 n=59 Tax=cellular organisms RepID=DBH1_RHILE Length = 91 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 53/91 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + +K GL+K DA V+ FE ++ L+NG ++L+GFG+F + + G Sbjct: 1 MNKNELVSAVAEKAGLTKADAASAVDAVFETVQSELKNGGDIRLAGFGSFSVSRREASKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP TG ++ I AR V F G+ LK V + Sbjct: 61 RNPSTGAEVDIPARNVPKFSAGKGLKDAVNS 91 >UniRef50_C6BPZ9 Histone family protein DNA-binding protein n=1 Tax=Ralstonia pickettii 12D RepID=C6BPZ9_RALP1 Length = 94 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 46/90 (51%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + + ++++ + D+ S ++ F + + A+ +G+ V++ GFG F + R G Sbjct: 1 MNRKDLAKAIADRSNTSSAQVMRWLDAFEKVVTDAVASGDVVQIMGFGTFSTSRRRARNG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 NP TGE+I + A V F G +L+ V Sbjct: 61 HNPGTGEEIQVPAVTTVRFSAGSRLRQAVN 90 >UniRef50_Q7WX14 Putative histone-like protein n=2 Tax=Proteobacteria RepID=Q7WX14_RALEH Length = 114 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TKAE+ E + + GL+K A+E + + I A+ G+ + L GFG F ++ +R Sbjct: 22 MTKAELIEAIAAGVDGLTKAKAEEALNVTLHAIMDAVAKGDALSLVGFGTFSKGERAERM 81 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE+I + A R V F+ GQ+ + V Sbjct: 82 ARNPRTGEEIKVEAARTVKFKAGQRFREAVNQ 113 >UniRef50_C3M8C0 DNA-binding protein n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C3M8C0_HAMD5 Length = 113 Score = 106 bits (265), Expect = 2e-22, Method: Composition-based stats. Identities = 36/96 (37%), Positives = 53/96 (55%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ E + DK GL+K + E V F I +L E V++ F F + +++R Sbjct: 1 MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIDSLGKKEPVQIIRFATFKVSHRSERMS 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKD 98 R+PKTGE I AR V F G++LK+ V SPK+ Sbjct: 61 RHPKTGEKIKTPAREVPVFSAGKRLKASVHLQSPKE 96 >UniRef50_B0KQB3 Histone family protein DNA-binding protein n=14 Tax=Gammaproteobacteria RepID=B0KQB3_PSEPG Length = 101 Score = 105 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E++ + +K L+K A +++ + I AL+ + V L GFG F+ R + R G Sbjct: 1 MRKPELAAVIAEKADLTKEKANQVLNAILDSITGALDK-DTVTLVGFGTFEKRHRGARTG 59 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 +NP+TGE + I A V F+PG+ LK V Sbjct: 60 KNPQTGEPVKIKASNTVAFKPGKNLKDSVN 89 >UniRef50_A6LB49 DNA-binding protein HU-beta n=5 Tax=Bacteroidales RepID=A6LB49_PARD8 Length = 94 Score = 105 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 53/90 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ E L DK GL K++AK++++ + E + + E++ L GFG R + QR Sbjct: 1 MNKAELIEALADKTGLQKQEAKKVLDAYIEIVTERMSENEEIVLVGFGTLIPRPQTQRLA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNPKTG + I AR V F+PG+ L + Sbjct: 61 RNPKTGTPVMIPARTTVKFKPGKFLLEAMN 90 >UniRef50_B7JAF9 Integration host factor, alpha subunit, putative n=2 Tax=Acidithiobacillus ferrooxidans RepID=B7JAF9_ACIF2 Length = 107 Score = 105 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 40/99 (40%), Positives = 61/99 (61%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M +TK +++ +L++ G + A++ V+ FFE +R A+ ++KLSGFG F +R K+ R Sbjct: 1 MTITKKDVANHLWEVGGWTHPQAEQFVDAFFEHMRAAIITESELKLSGFGRFTVRAKSSR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 PGRNPKTG+ I ARRVVTF L+++ P Sbjct: 61 PGRNPKTGQPYEIKARRVVTFSASALLRAKSNQIFPYSR 99 >UniRef50_C5BJS4 DNA-binding protein HU n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BJS4_TERTT Length = 93 Score = 105 bits (264), Expect = 4e-22, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 52/87 (59%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ + L L++ A ++VE E++ AL GE+V+L G G+F +R +N G Sbjct: 1 MRKTDLVKQLCTLGELNRVQADDVVEAIVEQVTNALARGERVQLPGLGSFSVRHRNAHTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKS 89 NP+TGE + I A+ + F+ G++L+ Sbjct: 61 INPQTGEALRIAAKNQIFFKAGKRLRD 87 >UniRef50_B6KEZ7 DNA-binding protein HU, putative n=3 Tax=Toxoplasma gondii RepID=B6KEZ7_TOXGO Length = 235 Score = 105 bits (264), Expect = 4e-22, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 53/98 (54%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 A+T+ ++ + +L + + + ++ V F I +LE G++V LS FG+ LR + +R Sbjct: 120 AVTRKDLVASVAAELQVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGERV 179 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 RNP+TGE + + A TF + LK +V P E Sbjct: 180 ARNPRTGEQLTVPATTFPTFSFSKVLKDKVREVIPAHE 217 >UniRef50_A7H8A7 Histone family protein DNA-binding protein n=6 Tax=Cystobacterineae RepID=A7H8A7_ANADF Length = 126 Score = 105 bits (264), Expect = 4e-22, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 56/92 (60%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+++ L K G++++ A+ +E F+ ++ AL GE +++ G G F ++ + G Sbjct: 1 MLKSDLINILVVKRGVTQKQAESTIETIFDSMKDALCRGENIEIRGLGAFHVKHYDGYQG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNPKTGE IP+ +R + FR G++L+ RV Sbjct: 61 RNPKTGEVIPVKPKRGILFRTGKELRDRVNRP 92 >UniRef50_Q7NFI0 Gll3545 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NFI0_GLOVI Length = 105 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 L + ++ + + ++ GL+++ A ++ E I AL G VKLSGFG+F +R + R Sbjct: 7 LNRQQLLQQMASRVDGLTQKTAGAALDAALEVIADALAQGRTVKLSGFGSFQVRRRPART 66 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 +P+TG+ + + A F P Q L+ R+ Sbjct: 67 NIHPRTGQPVLVPAAWNAVFSPAQALRERL 96 >UniRef50_A6CAS4 Probable DNA-binding protein HU n=2 Tax=Planctomycetaceae RepID=A6CAS4_9PLAN Length = 148 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 60/91 (65%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK E+ + + +++GL++ KE+V+ F+ I L ++++L FG F+++ + R Sbjct: 1 MTKKEIVKVISEEIGLTQLKTKEIVQKTFDAIVDTLVTDKRIELRNFGVFEVKKRAARKA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TG+ + + + VVTF+PG++++ RV N Sbjct: 61 RNPRTGDRVDVEEKYVVTFKPGKEMEKRVRN 91 >UniRef50_B0VJA9 DNA-binding protein HU (DNA-binding protein II) (TL29) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJA9_9BACT Length = 95 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 56/95 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKA++ + + + G+ ++D +V+ I+ ++ G +++ GFG F L+ + R G Sbjct: 1 MTKADLVKIISENTGIIRKDVAVVVDALLYAIKDSMAKGNHIEIRGFGTFKLKTRKPRVG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97 RNPKT + +P+ AR V TF+ ++ K+ V N K Sbjct: 61 RNPKTDQKVPVPARTVPTFKFSREFKNAVVNVKTK 95 >UniRef50_B0S0H5 DNA binding protein n=12 Tax=Bacteria RepID=B0S0H5_FINM2 Length = 96 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + K LSK +++ + F + + L GE+V+L GFG F+ R++ R G Sbjct: 1 MNKSELLSSIAKKSELSKVESERALNAFIKTVEETLAKGEKVQLVGFGTFESRERKAREG 60 Query: 63 RNPKTGED-IPITARRVVTFRPGQKLKSRVENASPK 97 RNP+ E+ I I A F+ G+ LK V K Sbjct: 61 RNPRNPEEKIQIPASNAPVFKAGKSLKEAVNQKKSK 96 >UniRef50_A0L712 Histone family protein DNA-binding protein n=5 Tax=Magnetococcus sp. MC-1 RepID=A0L712_MAGSM Length = 91 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 36/90 (40%), Positives = 59/90 (65%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK+E+ + + GL+K+ A +V+L F E+ +AL GE+V+L GFG F+ R + R Sbjct: 1 MTKSELILTIAAQKGLTKQYAAMVVDLVFSELGKALAKGERVELRGFGVFEPRARKPRAA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNPKTGE + + ++ V F+PG ++ RV+ Sbjct: 61 RNPKTGEKVAVESKTAVHFKPGLDMRKRVD 90 >UniRef50_C1SGM2 Bacterial nucleoid DNA-binding protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGM2_9BACT Length = 91 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 40/91 (43%), Positives = 60/91 (65%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKA++ E + +KLGL+K+D ++V+ F E+R + VK+SGFGNF+++ + +R G Sbjct: 1 MTKADIVELIHEKLGLTKKDIAKVVDELFNEVRDQILGKNNVKISGFGNFEVKKRGRRIG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNPKTG + I R VV FRP Q K V + Sbjct: 61 RNPKTGVETVIEPRTVVVFRPSQIFKDEVND 91 >UniRef50_A1AWN5 Histone family protein DNA-binding protein n=3 Tax=Gammaproteobacteria RepID=A1AWN5_RUTMC Length = 101 Score = 104 bits (260), Expect = 9e-22, Method: Composition-based stats. Identities = 31/93 (33%), Positives = 51/93 (54%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 + + K ++ L D LSK DAK VE+ +E+ + + +G+ +++ GFG F + + R Sbjct: 8 LYMKKTDLILNLSDSSDLSKIDAKIAVEVILQELTQGIVSGQGIEIRGFGGFYKKHRKPR 67 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 G NPKT E + + V F+PG+ LK V Sbjct: 68 QGINPKTSERTQVGEKFVPFFKPGKLLKEIVNK 100 >UniRef50_B2S525 Integration host factor subunit alpha n=48 Tax=Alphaproteobacteria RepID=IHFA_BRUA1 Length = 107 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 45/98 (45%), Positives = 68/98 (69%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T+A+++E ++ K+GLS+ ++ LVE+ +E+ A+ NGE VKLS F F +RDKN+R Sbjct: 5 TVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERI 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 GRNPKTGE++PI RRV+TF+ LK R+ K + Sbjct: 65 GRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQ 102 >UniRef50_C8WVU7 Histone family protein DNA-binding protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVU7_ALIAD Length = 90 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 45/90 (50%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + ++GL K +++ F E L+ GE+V L G F ++ R Sbjct: 1 MNKGELVAEVQARVGLPKSQVLQVLNTFCEVTTERLQAGEEVSLPPLGKFQYVMRSARRQ 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TGE I + + V FRP LK RV Sbjct: 61 RNPQTGEMIDVPEKATVRFRPSGALKGRVN 90 >UniRef50_B1XSK3 Histone family protein DNA-binding protein n=18 Tax=Bacteria RepID=B1XSK3_POLNS Length = 106 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 34/93 (36%), Positives = 48/93 (51%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 + L KAE+ + D +SK A+ + E I +A+ G+ V+L GFG F + R Sbjct: 11 LHLNKAELIAAIADDAEISKAKAEFALNSAIENIIKAVTKGDSVQLIGFGTFASSKRAAR 70 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNPKTGE + I A + V F G+ K V Sbjct: 71 MGRNPKTGEPLKIAAAKTVKFSAGKAFKDSVNK 103 >UniRef50_Q121G1 Histone-like DNA-binding protein n=12 Tax=Bacteria RepID=Q121G1_POLSJ Length = 103 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 52/90 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + +AE+ + + + LSK ++E+ E I++A++ G+ V+L GFG F + R G Sbjct: 1 MNRAELIDTIAAETDLSKAATGRVLEVLLETIQKAVKKGDGVQLVGFGTFKSTKRAARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 +NP+TGE + I A V F G K K+ V+ Sbjct: 61 KNPRTGEAVKIPATTVPKFVAGAKFKAVVD 90 >UniRef50_C9RMP4 Histone family protein DNA-binding protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMP4_FIBSS Length = 124 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 48/91 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK + + + G + D K +VE F + + L G +++ GFG F + + RP Sbjct: 4 ITKQSLIQEIAKSTGFVRNDIKIVVEQFLDLLGEKLIEGNTIEIRGFGTFACKPRKARPA 63 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE + I R V TF+ +K ++ + Sbjct: 64 RNPRTGETVLIDERLVPTFKFSNDIKDKINS 94 >UniRef50_D1UA57 Histone family protein DNA-binding protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1UA57_9DELT Length = 92 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 2/92 (2%) Query: 3 LTKAEMSEYLFDK--LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 + K+E+ + +F++ G SK ++ V + I L ++V ++GFG+F+ R Sbjct: 1 MNKSELMDAVFERRTTGFSKCHVEKAVNDALDIIAEQLAKSDKVVITGFGSFEAVTTAPR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNP GE + I A + + F+PG+ LK V+ Sbjct: 61 LGRNPHNGEAVQIPAGKKIKFKPGKALKEAVK 92 >UniRef50_Q5HUP6 DNA-binding protein HU n=32 Tax=Campylobacteraceae RepID=DBH_CAMJR Length = 98 Score = 103 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 48/97 (49%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKA+ + GL+K+DA + I L G+ + GFG F +++ R Sbjct: 1 MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 R P TG+ I + A RV F+ G+ LK V AS K + Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKK 97 >UniRef50_P19436 DNA-binding protein HU n=117 Tax=root RepID=DBH_THET8 Length = 96 Score = 103 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 34/92 (36%), Positives = 55/92 (59%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TKA++ + + GL K+D K +V+ ++ AL NG +V+L+GFG F++R + R Sbjct: 5 TVTKADLVDQVAQATGLKKKDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKART 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 G P T E I I A + F+PG+ LK +V+ Sbjct: 65 GVKPGTKEKIKIPATQYPAFKPGKALKDKVKK 96 >UniRef50_D2LEN1 Integration host factor, alpha subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LEN1_RHOVA Length = 245 Score = 103 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 48/96 (50%), Positives = 68/96 (70%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LT+A+++E +F+K+GL + +A ELVEL ++I ALE GE +KLS FG+F LR K++R Sbjct: 19 TLTRADLAEAVFEKVGLPRNEAAELVELVLKQIVYALERGEPIKLSSFGSFGLRQKSERV 78 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97 GRNPKTGE +PIT RRV+ F+ +K R+ K Sbjct: 79 GRNPKTGEIVPITPRRVIVFKASNIMKDRINAGLAK 114 >UniRef50_Q3IKW5 DNA-binding protein HU-alpha (HU-2), likely to play a role in DNA replication and in rpo translation n=3 Tax=Gammaproteobacteria RepID=Q3IKW5_PSEHT Length = 89 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 48/89 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KA++ + K L+K+DA+ + + I ++L G+QV+++GFG F L R G Sbjct: 1 MNKAQLVTAMAQKSELTKKDAQAALTSLQKVITKSLAEGDQVQINGFGTFALSYYPARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TG I I F+ + LK + Sbjct: 61 RNPQTGASIEIEGANKAVFKASKALKDVL 89 >UniRef50_Q89B22 DNA-binding protein HU n=16 Tax=Bacteria RepID=DBH_BUCBP Length = 92 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 53/91 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + K LSK K ++E+ I ++L++G V+L GFG F + ++ R G Sbjct: 1 MNKSELINIISKKSNLSKIQIKNILEITLTAIIQSLKDGNSVQLVGFGTFKVNNRAARIG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TG+ I I+A + F G+ K+ ++ Sbjct: 61 RNPQTGQTIHISATKTPVFISGKTFKTAIKT 91 >UniRef50_A4WS11 Histone family protein DNA-binding protein n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4WS11_RHOS5 Length = 90 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 52/87 (59%), Gaps = 1/87 (1%) Query: 1 MA-LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQ 59 M L K+++ + +K+G+S+ + +++ ++I A+ G+ + L+GFG+F R + Sbjct: 1 MTRLNKSDLVSTVAEKVGVSRLAVQTVLDEAVDQIANAVRCGDSITLTGFGSFKPRHRPA 60 Query: 60 RPGRNPKTGEDIPITARRVVTFRPGQK 86 R GRNP+TGE + I A + F P ++ Sbjct: 61 RTGRNPRTGEAVAIPASTSIGFTPSRR 87 >UniRef50_A5CWF3 Integration host factor, alpha subunit n=2 Tax=sulfur-oxidizing symbionts RepID=A5CWF3_VESOH Length = 109 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 41/88 (46%), Positives = 61/88 (69%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M++TK +++ L + ++ A + FF++I++ L +GE VKLS FGNF +R+K+ R Sbjct: 1 MSITKKDIANVLVKSMDITHVQALSITHDFFDQIKQTLASGESVKLSSFGNFIIREKSSR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLK 88 GRNPKTGE + I+ARRVV F+ G KLK Sbjct: 61 VGRNPKTGEMVEISARRVVVFKSGPKLK 88 >UniRef50_D2BF20 Putative uncharacterized protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BF20_STRRD Length = 106 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 43/85 (50%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ E + GLS+R +E I+ A+ ++V + GFG+F++ K R G Sbjct: 12 MNKRELIEKAAAEAGLSRRQTAAALEAILGTIQTAVAAEDKVAIPGFGSFEIVHKPARTG 71 Query: 63 RNPKTGEDIPITARRVVTFRPGQKL 87 RNP+TGE + I F+P Sbjct: 72 RNPQTGEPLEIAETWTAKFKPSPGF 96 >UniRef50_B3EBV2 Histone family protein DNA-binding protein n=3 Tax=Desulfuromonadales RepID=B3EBV2_GEOLS Length = 93 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 35/93 (37%), Positives = 61/93 (65%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 MALTK ++ + + ++ ++ +DA LVE I+ LE+GE +K++ FG F++++K+ R Sbjct: 1 MALTKNKLIQLVAEQQHITLKDAALLVEELITLIKATLESGESLKIAKFGLFEVKEKHAR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNP+TGE I I R+V++F+P L+ + Sbjct: 61 RGRNPQTGEAITIEPRKVISFKPSVLLRQAINQ 93 >UniRef50_P29214 DNA-binding protein HU homolog n=6 Tax=cellular organisms RepID=DBH_GUITH Length = 93 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 51/93 (54%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+++ + SK D ++++ E I + GE+V L GFG+F+ R++ R G Sbjct: 1 MNKSQLISKIAYYTKYSKTDIEKIITSMLEIIVDTVATGEKVTLVGFGSFEARERKAREG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 RNP+TGE + + A R+ TF G +++V Sbjct: 61 RNPRTGEKLFLPASRIPTFSVGNFFRNKVNKTF 93 >UniRef50_B5YLD8 Integration host factor alpha-subunit n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YLD8_THEYD Length = 94 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 39/91 (42%), Positives = 63/91 (69%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKA++ ++F+++GL + + ++VE FE ++ AL+ E VK+SGFG F +R K R G Sbjct: 1 MTKADLVNFIFERVGLPRTEIHKIVETVFETMKEALQEEEVVKISGFGVFTVRRKGSRIG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNPKT + + I R+VVTFRP ++LK ++ Sbjct: 61 RNPKTMQIVEIKPRKVVTFRPSEQLKQSIQK 91 >UniRef50_C4XHM4 HU_IHF family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XHM4_DESMR Length = 92 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 55/90 (61%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + +K L A E V FFE I++AL NG++V++ GFG+F +++ + G Sbjct: 1 MNKGELIKAVGEKYNLDHEFAVEFVNSFFESIKQALVNGDRVEVRGFGSFAVKEYDGYTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNPKTG + + +++ F+ G+ K+ + Sbjct: 61 RNPKTGIKVEVKPKKIPFFKTGRDFKNYLN 90 >UniRef50_B7AFK0 Putative uncharacterized protein n=1 Tax=Bacteroides eggerthii DSM 20697 RepID=B7AFK0_9BACE Length = 106 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 46/89 (51%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + GL DA + + F + + GE + SG G F +R+ RPG Sbjct: 1 MNKQELIKAVAAASGLCVVDASKEMSAFENILEDCMARGEILSWSGVGAFCVREHKARPG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP TG + I R+VV F PG+ L+ V Sbjct: 61 RNPFTGLGMRIPTRKVVKFSPGKSLREAV 89 >UniRef50_Q01W44 Histone family protein DNA-binding protein n=3 Tax=Acidobacteria RepID=Q01W44_SOLUE Length = 108 Score = 102 bits (254), Expect = 4e-21, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 55/83 (66%) Query: 5 KAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRN 64 K ++ + ++ G++K A+ VE FE +++ALE G++++L GFG F+++ + GRN Sbjct: 22 KLDIINEVVNRTGITKTKAEMAVETVFESMKKALEQGDRIELRGFGVFNVKPRKTGIGRN 81 Query: 65 PKTGEDIPITARRVVTFRPGQKL 87 P+TG ++ I + V F+PG++L Sbjct: 82 PRTGAEVSIPPGKAVRFKPGKEL 104 >UniRef50_UPI0001BC7A84 putative histone-like DNA-binding protein n=1 Tax=Bacteroides sp. D2 RepID=UPI0001BC7A84 Length = 88 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 30/86 (34%), Positives = 52/86 (60%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + K LS R+A +++ + I ++ GE + L GFG+F ++++ +R G Sbjct: 1 MNKTELIKEVALKGKLSFREAGYALDVIIDTITETMQKGENITLVGFGSFVIQERKERNG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLK 88 NP TG + I A+R V FRPG K++ Sbjct: 61 HNPSTGGSMVIPAKRQVKFRPGSKMR 86 >UniRef50_B1Y0T8 Histone family protein DNA-binding protein n=6 Tax=Bacteria RepID=B1Y0T8_LEPCP Length = 116 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 51/91 (56%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K+E+ E++ +K +SK A +E ++ L+ G+ V L GFG F + + R Sbjct: 26 TVNKSELIEHIAEKADISKAAAARALEALIGGVKSTLKKGDSVSLVGFGTFAVTKRAARS 85 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNP+TG I I + +V FRPG+ LK + Sbjct: 86 GRNPRTGAVIKIKSSKVPKFRPGKALKDSLN 116 >UniRef50_B1Y4B9 Histone family protein DNA-binding protein n=6 Tax=cellular organisms RepID=B1Y4B9_LEPCP Length = 131 Score = 101 bits (253), Expect = 5e-21, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 47/90 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ E L + LSK +A ++ + + ++ G V L GFG+F + R G Sbjct: 1 MNKAELIEVLAKQHTLSKAEAARILATVLDTVVATVKKGGAVTLPGFGSFKQHARAARNG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 NP TG+ I I A ++ F PG K+ V+ Sbjct: 61 VNPGTGDKIKIAAVKLPKFTPGTAFKAAVD 90 >UniRef50_C0QI67 IhfA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI67_DESAH Length = 108 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 40/98 (40%), Positives = 61/98 (62%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 MALTK E++E L +S+ + +++E F E I+ LE GE V +SGFG F + +K R Sbjct: 1 MALTKTEITERFQKALDISRNTSYDIMEDFLEIIKETLEQGEDVMISGFGKFCVNEKKAR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKD 98 GRNP T E++ + ARRV+TF+ KL++ + + K Sbjct: 61 KGRNPATSEEMILPARRVITFKCSGKLRNLINTSEQKQ 98 >UniRef50_A0LI64 Histone family protein DNA-binding protein n=6 Tax=Deltaproteobacteria RepID=A0LI64_SYNFM Length = 96 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 58/92 (63%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK+E+ E L G++ + A+ V + F+ + AL +++++ GFG+F +++ G Sbjct: 1 MTKSELIETLAKAEGITLKAAETAVNVAFQSMENALIRSDRLEIRGFGSFKVKNYEGYKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNPKTGE I + ++++ F+ G++LK RV + Sbjct: 61 RNPKTGELIEVNSKKLPFFKVGKELKERVNGS 92 >UniRef50_B8GX11 DNA-binding protein HU n=6 Tax=Caulobacteraceae RepID=DBH_CAUCN Length = 92 Score = 101 bits (253), Expect = 7e-21, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M TKAE+ + +K G++K AK+ +E F E + +L++G+ V+L GFG F + Sbjct: 1 MT-TKAELVTAIAEKAGINKNQAKDALEAFIEAVTDSLKSGQDVRLVGFGTFKAVTRAAG 59 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE + A + F+ G+ LKS + + Sbjct: 60 TARNPRTGETVNRPASKTARFQVGEGLKSSLNS 92 >UniRef50_C1D9R2 HupB2 n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9R2_LARHH Length = 90 Score = 101 bits (252), Expect = 8e-21, Method: Composition-based stats. Identities = 33/89 (37%), Positives = 51/89 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK E+ + L ++ + K + +V+ + IR L G ++ L+ G F LR++ R G Sbjct: 1 MTKQELIQRLAERANVGKVETLLVVDALEQLIREELAAGGEIPLARTGKFRLREQAARMG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNPKTGE + I ARR + F P + LK V Sbjct: 61 RNPKTGESVMIPARRKIVFTPAKALKDAV 89 >UniRef50_Q1NPH8 Histone-like bacterial DNA-binding protein n=4 Tax=Deltaproteobacteria RepID=Q1NPH8_9DELT Length = 93 Score = 101 bits (252), Expect = 8e-21, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 1/88 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K ++ + +++ G K+D + V++ E I ALE +V++ GFG+F +R++ R Sbjct: 1 MLKRDLINAVAEEMPGFLKKDLDQAVDIMLESILEALEENRRVEIRGFGSFSVRERKART 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKS 89 +NP+TG+ + I R+ V F + LK Sbjct: 61 TKNPRTGKVMHIPPRKNVHFTMSKSLKD 88 >UniRef50_Q1V2L3 Non-specific DNA-binding protein HBsu n=6 Tax=root RepID=Q1V2L3_PELUB Length = 91 Score = 100 bits (251), Expect = 9e-21, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 47/91 (51%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ L L LSK DA+ + I AL+ + VK++GFG + + + R G Sbjct: 1 MNKKQLIAQLSGSLNLSKADAERTFDTITNTILDALKGDDTVKIAGFGTYKVAKRKARVG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE I I A + V F P + LK Sbjct: 61 RNPRTGEQIQIGASQKVKFLPAKALKEIFNK 91 >UniRef50_B3R809 DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation n=34 Tax=root RepID=B3R809_CUPTR Length = 92 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK E+ + + + GL+K A++ + + I A+ G+ + L GFG F ++ +R Sbjct: 1 MTKTELIDAIAAGVDGLTKAKAEQALNVTLSAIMDAVAKGDTLSLIGFGTFSKGERGERM 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE+I + A + V F+ GQK K V Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVNQ 92 >UniRef50_Q30VZ6 Histone-like DNA-binding protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30VZ6_DESDG Length = 95 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 5/95 (5%) Query: 3 LTKAEMSEYLFDKLGL-----SKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDK 57 +TKAE+ + + L L + + +++ + I L G+ V+L+GFG F + + Sbjct: 1 MTKAELEMAVVEVLALNGIKATHKAVADVISATLDVITGELAGGDPVRLTGFGAFKVTRR 60 Query: 58 NQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 R GRNPKTGE + I A V F PG+ LK + Sbjct: 61 TARIGRNPKTGEPVEIPASTGVKFSPGKTLKEALN 95 >UniRef50_A1WDL1 Histone family protein DNA-binding protein n=12 Tax=Proteobacteria RepID=A1WDL1_ACISJ Length = 91 Score = 100 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 42/91 (46%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + + ++ + + + SK ++ ++ + G VKL+GFG F+ R G Sbjct: 1 MNRQDLIDAIAEDTEASKAATTRFLDSLITIVQNEVAKGGAVKLTGFGTFEKAAVAARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNPKTG I I + F PG K V++ Sbjct: 61 RNPKTGAPIKIPSTHKPKFTPGATFKDLVKD 91 >UniRef50_D1CFB6 Histone family protein DNA-binding protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFB6_THET1 Length = 84 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 31/81 (38%), Positives = 50/81 (61%) Query: 5 KAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRN 64 K E+ + ++ G++K +++ E EIR +LE GE V + GFG F + +++ R GRN Sbjct: 4 KTELINQVAERTGMTKSQVQKVFEEMLSEIRSSLEKGEDVIIRGFGTFKVTERSPRKGRN 63 Query: 65 PKTGEDIPITARRVVTFRPGQ 85 P+TGE+I I + VTFR + Sbjct: 64 PRTGEEIEIPGGKRVTFRMSK 84 >UniRef50_C4K783 Integration host factor (IHF), DNA-binding protein, alpha subunit n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K783_HAMD5 Length = 107 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 55/99 (55%), Positives = 74/99 (74%), Gaps = 2/99 (2%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGE--QVKLSGFGNFDLRDKN 58 M +TKA++ + + +K GL +++K+L+ELFFEEIR L + E ++K SGFGNF+LRDK Sbjct: 1 MTITKADILDDVSEKFGLEPKESKDLLELFFEEIRCILGDEECSELKFSGFGNFNLRDKK 60 Query: 59 QRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97 RPGRNPKTGED+ I RRVVTF G KLK+ +EN + K Sbjct: 61 ARPGRNPKTGEDVLIKKRRVVTFHAGLKLKTLIENGNEK 99 >UniRef50_C8XUL7 Putative DNA-binding protein n=1 Tax=Shigella phage phiSboM-AG3 RepID=C8XUL7_9CAUD Length = 92 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 52/91 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + + E ++ ++K +A+++V F + ++ A+ G V+L GFG F+++ + R G Sbjct: 1 MNRTEFVAHIASTQNITKGEAEKVVASFIDGVKTAVAAGASVQLVGFGAFEVKHQEAREG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP G+ I I A+ VV F+ G+ LK+ Sbjct: 61 RNPLNGQTIQIEAKNVVKFKVGEGLKNAANG 91 >UniRef50_A5EU64 Histone-like DNA-binding protein n=33 Tax=cellular organisms RepID=A5EU64_BRASB Length = 130 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 1/99 (1%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M T E++E + + L+K AK +V+ F+ I A +G + L GFG F ++D R Sbjct: 30 MT-TANEIAEKIAAENDLTKAQAKTIVDSVFKAIADAAVSGAETSLPGFGKFKVKDSPAR 88 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 GRNP TG I I A R +TF P + +K + + ++ Sbjct: 89 EGRNPSTGATIAIAASRKLTFTPAKAIKDSLNGGTIPND 127 >UniRef50_P17615 DNA-binding protein HB1 n=19 Tax=Actinobacteridae RepID=DBH1_BIFLO Length = 93 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 47/91 (51%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 MA K+++ + K L+K A+ V F + A+++GE +KL+G + + + R Sbjct: 1 MAYNKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAAR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNP+TGE I I A V G LK V Sbjct: 61 TGRNPRTGEQIDIPASYGVRISAGSLLKKAV 91 >UniRef50_C7Q397 Histone family protein DNA-binding protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q397_CATAD Length = 167 Score = 99.8 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 55/93 (59%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KA+++ + +++ ++ DA++ V+ F+ I R + GE+V++ GFG FD + R G Sbjct: 2 VNKADLAAEVAEQMSGAEPDARQYVDAVFDVIMRHVAAGERVQILGFGTFDSVQRAARLG 61 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 RNP+TG I + A F GQ ++RV AS Sbjct: 62 RNPQTGAAIQVPAGTSPRFHAGQTFRTRVAEAS 94 >UniRef50_B7B856 Putative uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7B856_9PORP Length = 101 Score = 99.8 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 44/93 (47%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K + E + D+L + ++ + I +L E+V + FG+F L + RP Sbjct: 1 MNKHSLVEIISDRLNMPHDLVCSVINTLADVIADSLLEEERVVIQNFGSFRLWHQASRPV 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 RNPKTGE + R V F PG+ L + + Sbjct: 61 RNPKTGEPMIFQPRNSVKFVPGKHLVDLLNRQA 93 >UniRef50_Q0C4A3 DNA-binding protein HU n=3 Tax=Hyphomonadaceae RepID=Q0C4A3_HYPNA Length = 88 Score = 99.4 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 50/87 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+++ + GLS+ DA + V+ FE + A ++ +QV ++GFG F + +N R G Sbjct: 1 MNKGELTKAVAAASGLSQSDAGKAVDALFETVAAAAKSRQQVAIAGFGTFSAKTRNAREG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKS 89 RNP T E I I + + F+P LK Sbjct: 61 RNPATKETIKIPEKTSLAFKPASALKD 87 >UniRef50_A7V341 Putative uncharacterized protein n=4 Tax=Bacteroides RepID=A7V341_BACUN Length = 404 Score = 99.0 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 30/93 (32%), Positives = 45/93 (48%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 L ++ + L ++ G+SK++A V+ FF+ I +LE + VK+ G G F L D R Sbjct: 5 LNIQDLIDTLAERHGMSKKNADSFVKEFFQLIEESLEKDKYVKIRGLGTFKLIDVGSRES 64 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 N TGE I V+F P LK + Sbjct: 65 VNVNTGERFEIQGHTKVSFTPEPALKDIINRPF 97 >UniRef50_C6P6T8 Histone family protein DNA-binding protein n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P6T8_9PROT Length = 100 Score = 99.0 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 1/89 (1%) Query: 2 ALTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 ++ ++++ L ++ L +D + V + +++ + G +V++ GFG+F L + R Sbjct: 5 SMNRSDLISKLAEQTPNLQAKDVELGVRVILDKLATTISKGNRVEIRGFGSFGLNYRKPR 64 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKS 89 GRNPKTG I + A+ F+PG+ LK Sbjct: 65 NGRNPKTGAKIEVAAKYHPRFKPGKALKE 93 >UniRef50_D2Q2Y1 Histone family protein DNA-binding protein n=14 Tax=Bacteria RepID=D2Q2Y1_9ACTO Length = 97 Score = 98.6 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 47/88 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + + E+ + K G+ + A+++++ + + A+ G++V L+G + + + R G Sbjct: 1 MNRNELVAGVAAKAGIPRNQAEKVLDALGDVVTEAVHKGDKVSLTGLLSIERVLRAPRTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSR 90 RNP+TGE + I A V G +LK+ Sbjct: 61 RNPQTGEPLSIPAGYSVRLSCGSRLKAA 88 >UniRef50_B2AK36 HU, DNA-binding transcriptional regulator, beta subunit n=2 Tax=Burkholderiaceae RepID=B2AK36_CUPTR Length = 92 Score = 98.2 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ + + + GL+K A++ + + I + G+ + L GFG+F ++ +R Sbjct: 1 MTKSELIDAIAAGVDGLTKAKAEQALNVTLSAIMDTVARGDALNLVGFGSFSKGERGERI 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TGE I + A + V FRPGQK K Sbjct: 61 ARNPRTGEKITVDAAKTVKFRPGQKFKDAAN 91 >UniRef50_A6Q378 DNA-binding protein HU n=4 Tax=Epsilonproteobacteria RepID=A6Q378_NITSB Length = 91 Score = 98.2 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 52/91 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE + + +K GLSK+D +++++ E I AL+NG++V GFG F + R Sbjct: 1 MKKAEFVQIVAEKAGLSKKDTQKVIDAALEVITDALKNGDEVAFIGFGTFTTAQRAAREA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 + P T + + A RVV F+ G+KLK V Sbjct: 61 KVPGTDRVVKVPATRVVKFKVGKKLKEAVAG 91 >UniRef50_Q8UG61 Integration host factor subunit alpha n=29 Tax=Alphaproteobacteria RepID=IHFA_AGRT5 Length = 112 Score = 98.2 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 46/98 (46%), Positives = 68/98 (69%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T+A+++E +F K+GLS+ ++ ELVE +EI A+ GE VKLS F F +R+KN+R Sbjct: 5 TVTRADLAESVFRKVGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREKNERI 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 GRNPKTGE++PI+ RRV+TF+ LK R+ A + Sbjct: 65 GRNPKTGEEVPISPRRVMTFKASNVLKQRILKAHTARK 102 >UniRef50_C5B569 Putative integration host factor n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B569_METEA Length = 140 Score = 98.2 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 49/94 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +T AE+ L +LGL + +V + L GE VKL GFG F +RD+ R Sbjct: 45 MTLAELESVLAGRLGLGSEETSRVVRAALSLVAERLAAGEDVKLQGFGRFCVRDRPARRR 104 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASP 96 ++P+ G ++ + ARR FRP + L+ + +S Sbjct: 105 KDPRDGRELEVPARRGAVFRPSRLLREALNRSSE 138 >UniRef50_P0A3H5 DNA-binding protein HU 1 n=43 Tax=Actinobacteria (class) RepID=DBH1_STRCO Length = 93 Score = 98.2 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENG-EQVKLSGFGNFDLRDKNQRP 61 + ++E+ L D+ ++++DA ++ F E + + G E+V + GF F+ + R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDIVSKGDEKVTIPGFLTFERTHRAART 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE I I A V G KLK + Sbjct: 61 ARNPQTGEPIQIPAGYSVKVSAGSKLKEAAKG 92 >UniRef50_Q92J57 DNA-binding protein HU n=10 Tax=spotted fever group RepID=DBH_RICCN Length = 99 Score = 97.9 bits (243), Expect = 8e-20, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 9/99 (9%) Query: 3 LTKAEMSEYLFDKLG---------LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFD 53 + K E ++ D L+K +A++ + L + + A+++ + ++GFG+F+ Sbjct: 1 MNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFE 60 Query: 54 LRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 + + R GRNPKTG + I A TFR G+K+K Sbjct: 61 IHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEACN 99 >UniRef50_Q1Q201 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q201_9BACT Length = 103 Score = 97.9 bits (243), Expect = 8e-20, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 53/91 (58%) Query: 4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGR 63 TK ++ E + K + K+ +++F +EI L G +++L FG F++R + R R Sbjct: 5 TKRDLCEKIARKTDNTHMVVKKTIQMFLDEIIGELSQGNRIELRDFGVFEIRQRAARKAR 64 Query: 64 NPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 NP+TGE + ++ VV F+ G+ ++ +V N+ Sbjct: 65 NPRTGEVAFVPSKNVVVFKVGKLMREKVGNS 95 >UniRef50_B7CAU3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAU3_9FIRM Length = 95 Score = 97.9 bits (243), Expect = 9e-20, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 52/91 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K +++ L +L +SK+DA V+L F E+ AL + V ++ FG F++ D+ R G Sbjct: 5 VNKESLTQTLSIQLNMSKKDAAYAVDLIFNEMSDALASDGHVDITAFGKFEIFDRKSRMG 64 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 NP T E + I A ++ FRP Q LK++ Sbjct: 65 INPVTKERMMIQATKLPKFRPSQTLKNKCNK 95 >UniRef50_B0NU55 Putative uncharacterized protein n=1 Tax=Bacteroides stercoris ATCC 43183 RepID=B0NU55_BACSE Length = 101 Score = 97.9 bits (243), Expect = 1e-19, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 52/90 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + ++ G++K+++++L+ + + ++ ++ L GFG F ++ K R G Sbjct: 1 MNKKELVDAIAEETGMNKKESRKLLNVIIGIVIEEMKKDGKLLLMGFGTFFVKQKPARRG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 NP T I I A+RVV FRP L S ++ Sbjct: 61 MNPSTFVPIEIPAKRVVYFRPSAYLNSLLK 90 >UniRef50_B0UCA4 Histone family protein DNA-binding protein n=3 Tax=Methylobacterium sp. 4-46 RepID=B0UCA4_METS4 Length = 102 Score = 97.9 bits (243), Expect = 1e-19, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 3 LTKAEMSEYLFD-KLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + +A++ + + L A LV + I AL G++++L GFG + R Sbjct: 1 MLRAQLIQRVAALNPHLPHGQADALVRAVLDRITEALMEGDRIELRGFGVLKTTAREARQ 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TGE + + A+R V FR +++ R+ Sbjct: 61 SRNPRTGEAVEVPAKRDVAFRASREMHERLN 91 >UniRef50_C9RKN2 Histone family protein DNA-binding protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKN2_FIBSS Length = 116 Score = 97.5 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 48/91 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK E+ + + + G ++ K +VE + I + G ++L GFG F + + +R Sbjct: 8 ITKKEIVDEIASQTGFTQVKTKVIVEELIDAISNCVIEGNNIELRGFGRFKNKQRKERRT 67 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNPKTGE + I A+ F P + L ++ N Sbjct: 68 RNPKTGELVNIPAKVRPVFEPSKDLIEKINN 98 >UniRef50_C6XF17 Integration host factor subunit alpha n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XF17_LIBAP Length = 114 Score = 97.5 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRN +T +++ I RRVV F+ LK R+ Sbjct: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 >UniRef50_A6LHR2 DNA-binding protein HU-beta n=3 Tax=Bacteroidales RepID=A6LHR2_PARD8 Length = 95 Score = 97.5 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 53/95 (55%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + + E+ + L DKL +++ +A V+ + E ALE+ + L GFG ++ +R G Sbjct: 1 MNRRELVKTLADKLSVTQAEAMRFVQAWEETTTEALESDGSLMLLGFGTLSAWEQTERIG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97 RNPK G I AR+ V F+PG+ L ++ +S K Sbjct: 61 RNPKNGVAYMIRARKSVKFKPGKLLLKQLNASSSK 95 >UniRef50_B4UEN5 Histone family protein DNA-binding protein n=3 Tax=Anaeromyxobacter RepID=B4UEN5_ANASK Length = 90 Score = 97.1 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYL-FDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TKA++ E + LSKR LV+ FE + + + ++ + GFG F ++ + R Sbjct: 1 MTKADLIEKVQALHDDLSKRQVALLVDSVFEHLAKGIRKDKRFTMPGFGTFVVKRRAGRV 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNP+TG +I I + V F+P +LK + Sbjct: 61 GRNPQTGAEIQIAPTKTVGFKPAPELKKAL 90 >UniRef50_P73418 DNA-binding protein HU n=21 Tax=Cyanobacteria RepID=DBH_SYNY3 Length = 100 Score = 97.1 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 6/95 (6%) Query: 3 LTKAEMSEYLFDKLG------LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRD 56 + K E+ + DK ++K++ ++ + I + GE+V L GFG+F+ R+ Sbjct: 1 MNKGELVHAVTDKAKEQLGESITKKEVDAVISAAIDCIMEVVAEGEKVTLVGFGSFEARE 60 Query: 57 KNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 + +R GRNPKTG+ + I A +V F G+ K +V Sbjct: 61 RKEREGRNPKTGDKMLIPATKVPAFSAGKMFKDKV 95 >UniRef50_B5ERD0 Histone family protein DNA-binding protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ERD0_ACIF5 Length = 91 Score = 97.1 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 49/91 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E L +SK DA+++ ++F + L ++ GF F++ +K R G Sbjct: 1 MNKLEFVAALAQHGAMSKVDAEKMFQVFRHTLETELPTAGKIVFPGFCTFEVAEKPARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP TG++I I A++ + F+ G++ +V + Sbjct: 61 RNPATGQEIDIPAKKSIKFKAGKEFADKVNS 91 >UniRef50_B7BF96 Putative uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7BF96_9PORP Length = 99 Score = 96.7 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 48/97 (49%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKAE+ + + G K +VE F E ++ A+ G +V L GFG+F ++ + ++ Sbjct: 1 MTKAEIVARIAKQTGAEKEVVMNVVEAFMESVKGAMIEGNEVFLRGFGSFIIKHRAEKVA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 RN I I A + F+P + V + KD+ Sbjct: 61 RNISQNTTIVIPAHSIPAFKPSKAFADMVNGKNNKDK 97 >UniRef50_A1S612 DNA-binding protein, HU family n=2 Tax=Shewanella RepID=A1S612_SHEAM Length = 91 Score = 96.7 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 51/91 (56%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KA +++++ + G+S+ +AK +E IR+ALE GE + L FG F+LR R Sbjct: 1 MNKATLTKFIANTTGVSQPEAKRQLEQILASIRQALEEGETLYLPQFGTFELRYHLPRQV 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNPKTGE + + +F+P LK + Sbjct: 61 RNPKTGELMEVAGFNQPSFKPAPALKQLIAG 91 >UniRef50_C8QYJ3 Histone family protein DNA-binding protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYJ3_9DELT Length = 97 Score = 96.7 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 62/90 (68%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 LT+ ++++ + +K+G S+R A +LV++ F+ ++ L E +KL FG F++R K+ R G Sbjct: 6 LTRKDLAKAINEKMGFSQRSAADLVDIVFDRLKATLLAEEPIKLVQFGTFNVRRKSPRQG 65 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TG+ + I+ R +++FRP + ++ R+ Sbjct: 66 RNPRTGDPMEISKRSMISFRPSKSVRERIN 95 >UniRef50_B9XSG3 Histone family protein DNA-binding protein n=4 Tax=Chlamydiae/Verrucomicrobia group RepID=B9XSG3_9BACT Length = 119 Score = 96.7 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 57/97 (58%), Gaps = 1/97 (1%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M +TK ++ + ++ GL ++ ++V+ + I AL G++V+L FG F+++ + R Sbjct: 1 MTMTKRDLVIRISNETGLVQQQVLDVVQKTLDYIAEALSKGDKVELRNFGVFEVKVRKAR 60 Query: 61 PGRNPKTGED-IPITARRVVTFRPGQKLKSRVENASP 96 GRNP +PI R VV F+PG+++++ V SP Sbjct: 61 IGRNPNAPATDVPIPQRSVVKFKPGKEMRAEVFKLSP 97 >UniRef50_C2M9J7 DNA-binding protein HU n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9J7_9PORP Length = 90 Score = 96.3 bits (239), Expect = 2e-19, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 48/85 (56%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K + + + DK L+++D K + E E I ++ GE++ L GFG+F + + R G Sbjct: 1 MNKTDFIKTVADKAQLTQKDTKAVYEAIVETIHEEMKKGERLTLVGFGSFYVSQRAARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKL 87 NP++G+ I I A + + F+P L Sbjct: 61 INPRSGKTIDIKASKSIKFKPSTAL 85 >UniRef50_A3EUM1 Putative histone-like DNA-binding protein n=2 Tax=Leptospirillum sp. Group II RepID=A3EUM1_9BACT Length = 102 Score = 96.3 bits (239), Expect = 2e-19, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Query: 2 ALTKAEMSEYLFDKLG-LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 LTK+E+ + L K G L+K+ E+V+ F I + G V + GFG F + R Sbjct: 8 TLTKSELIDTLHAKNGTLTKKAVSEVVDQVFSTITDHVAKGTAVNIVGFGKFHAVKRAAR 67 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNP TG I I A F G+ K V Sbjct: 68 TGRNPATGAVIKIAATTTPRFAAGKAFKDSV 98 >UniRef50_Q1J3J9 Histone-like protein DNA-binding protein n=4 Tax=Deinococcus RepID=Q1J3J9_DEIGD Length = 149 Score = 96.3 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 44/87 (50%) Query: 5 KAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRN 64 K ++ + + DK GL+K+ ++E V + A++ G+ V L G G ++ R G Sbjct: 53 KTQLVDMVADKTGLTKKQSEEAVSAMLGVVVDAIKQGKSVGLPGLGTLSVKATAARTGVR 112 Query: 65 PKTGEDIPITARRVVTFRPGQKLKSRV 91 P T E I I A + V F+ LKS + Sbjct: 113 PGTSERIQIPAGKKVAFKVASTLKSSL 139 >UniRef50_C0GE87 Histone family protein DNA-binding protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GE87_9FIRM Length = 84 Score = 96.3 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 32/81 (39%), Positives = 47/81 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K +++ + +KL + +DA+ V + I +L GE VKL+GFG FDLR +R Sbjct: 1 MIKTDVARSIAEKLNIQVKDAETTVNGLIDTITESLSAGEAVKLAGFGTFDLRHAPERAA 60 Query: 63 RNPKTGEDIPITARRVVTFRP 83 RNPKTGE + + A TFR Sbjct: 61 RNPKTGETVQVPATHYPTFRA 81 >UniRef50_C6IB23 HU family DNA-binding protein n=6 Tax=Bacteroides RepID=C6IB23_9BACE Length = 96 Score = 96.3 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 30/85 (35%), Positives = 45/85 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ + K L K +VE E I AL GE V L GFG F+++++ R G Sbjct: 1 MKKIDLIRSIAVKSNLKKEQIAIVVEGVMEAIAEALHQGESVTLVGFGTFEVKERKARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKL 87 N TGE + I ++ V F+PG K+ Sbjct: 61 YNLSTGEIMTIPGKKTVRFKPGAKM 85 >UniRef50_Q6KHG3 Bacterial nucleoid DNA-binding protein HU n=2 Tax=Bacteria RepID=Q6KHG3_MYCMO Length = 108 Score = 96.3 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 51/90 (56%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK ++ + + SK++ +E+V F EEI L +++ LS FG F++ ++ R G Sbjct: 18 ITKKDLIATIAENQNKSKKEVEEIVNAFLEEISSELVADKKINLSSFGIFEISERAARSG 77 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 NPKT E I I A + V F+ + LK +V Sbjct: 78 INPKTSEIIQIKATKSVKFKVSKSLKDQVN 107 >UniRef50_B9JPN0 Integration host factor alpha-subunit protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JPN0_AGRRK Length = 117 Score = 95.9 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 42/94 (44%), Positives = 65/94 (69%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LT+A+++ + ++GLS+ ++ ELV+ EEI AL GE V LS F F++R+K++RP Sbjct: 5 TLTRADITHSIIRQIGLSRTESAELVDTILEEICSALIRGENVGLSSFAAFNVREKSRRP 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 GRNPKTGED I ARRV++F +K++++ A Sbjct: 65 GRNPKTGEDYQIAARRVISFTASDAVKTQIQKAH 98 >UniRef50_O83278 DNA-binding protein HU n=2 Tax=Treponema pallidum RepID=DBH_TREPA Length = 105 Score = 95.9 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 53/90 (58%) Query: 4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGR 63 T++ + + L D++ LS+R +V+ F + ALE GE V+L FG F+ R + G+ Sbjct: 7 TRSFVVDALCDEVDLSRRHVARVVDSFVSVVTAALERGETVELRDFGVFESRVRKASVGK 66 Query: 64 NPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 + KTGE + I + VV FRP ++LKS V Sbjct: 67 SIKTGEVVSIPSHCVVVFRPSKRLKSAVRG 96 >UniRef50_B5YH73 DNA-binding protein HU 1 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH73_THEYD Length = 92 Score = 95.9 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 55/92 (59%), Gaps = 1/92 (1%) Query: 3 LTKAEMSEYLFDKLG-LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K+E+ E + K+ L+K+ + ++++ F+ + L GE++++ GF NF ++ + +R Sbjct: 1 MKKSELIERVSKKVDILTKKQIETIIDMIFDCMIETLSRGEKIEIRGFANFKVKQRPERI 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNPKTGE I + +R + F+ + LK + Sbjct: 61 ARNPKTGEQIKVPTQRAINFKMSKALKEALNK 92 >UniRef50_C6IG13 Putative uncharacterized protein n=8 Tax=Bacteroides RepID=C6IG13_9BACE Length = 487 Score = 95.9 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 47/93 (50%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 LT ++ + L K ++K+DA+ V+ FF I +ALEN + VK+ G G F L D + R Sbjct: 5 LTIQDLIDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLVDVDSRES 64 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 N TGE I V+F P L+ + Sbjct: 65 VNVNTGERFQIKGHTKVSFTPDTNLRDTINKPF 97 >UniRef50_Q9XB20 DNA-binding protein HU n=65 Tax=Bacteria RepID=DBH_STRGN Length = 91 Score = 95.5 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 53/89 (59%) Query: 4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGR 63 K ++ + L+K+D+ V+ F + L GE+V+L GFGNF++R++ R GR Sbjct: 3 NKQDLIAKVAAATELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 64 NPKTGEDIPITARRVVTFRPGQKLKSRVE 92 NP+TG++ I A +V F+ G+ LK V+ Sbjct: 63 NPQTGKETKIAASKVPAFKAGKALKDAVK 91 >UniRef50_A5VG36 Histone family protein DNA-binding protein n=2 Tax=Alphaproteobacteria RepID=A5VG36_SPHWW Length = 92 Score = 95.5 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 55/91 (60%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + ++++++L G +K DA++ V+L F I A GE+V L+GFG F ++D R G Sbjct: 2 MNNSDLADHLAGATGATKADARKAVDLVFAAIADAAAKGEEVSLNGFGKFKVKDVLAREG 61 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP TGE I I A + ++F + +K R+ + Sbjct: 62 RNPATGETIKIAASKKLSFSVAKAVKDRLNS 92 >UniRef50_Q2LW81 DNA-binding protein HU n=2 Tax=Proteobacteria RepID=Q2LW81_SYNAS Length = 91 Score = 95.5 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 1/89 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ E + +G K+ A+E V + + AL+ GE V L GFG F + ++ R G Sbjct: 1 MNKGDLVEAVTKVVG-KKKLAQETVGCVLDTMTEALKKGESVTLIGFGTFKVMKRSARTG 59 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TG+ I I A++V F G+KLK V Sbjct: 60 RNPQTGKPIKIKAKKVPKFTAGKKLKEAV 88 >UniRef50_B8IKW1 Histone family protein DNA-binding protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IKW1_METNO Length = 90 Score = 95.5 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 44/90 (48%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ + + K G+S+ +++ F + ++L++G+ V L G G + R G Sbjct: 1 MNKPDLLKAIAAKAGVSEAIGSKVLAAFGDIATQSLKSGDDVPLPGLGKLVTVRQEARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 NP+TG+ + I AR V R L + Sbjct: 61 HNPRTGQPLQIPARLVPKLRASTTLHDALN 90 >UniRef50_C9LHL9 Putative integration host factor IHF alpha subunit n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LHL9_9BACT Length = 423 Score = 95.2 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 4/97 (4%) Query: 3 LTKA----EMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKN 58 + + E+++ + +SK+ A+ FF+ I L + VK+ GFG F + N Sbjct: 1 MNRKLLLQEVADAFAQRANISKKKAEAFCRAFFDLIEEELTHESFVKIKGFGTFKVITVN 60 Query: 59 QRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 +R N TGE I I + ++F P +LK + Sbjct: 61 ERESININTGERIRIDSHAKLSFVPDSQLKDLINKPF 97 >UniRef50_C6HU01 Histone family protein DNA-binding protein n=3 Tax=Leptospirillum ferrodiazotrophum RepID=C6HU01_9BACT Length = 99 Score = 95.2 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 1/89 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK++++ L + G++ A+ L++ F + ++ L NG+ V++ FG + +K R Sbjct: 1 MTKSDLAARLAREFPGITCPLARTLIDYFLDAMKEGLANGDTVEIRDFGVLRVHEKAPRK 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSR 90 GRNPKTG + I AR+ V F+ G+ LK+ Sbjct: 61 GRNPKTGASVLIPARKTVRFKRGRALKNA 89 >UniRef50_Q2NIZ7 DNA-binding protein HU n=3 Tax=Candidatus Phytoplasma RepID=Q2NIZ7_AYWBP Length = 106 Score = 95.2 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 53/89 (59%), Gaps = 3/89 (3%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGE---QVKLSGFGNFDLRDKNQ 59 + K + L +K G++K++A + + F E I + E E +V L+GFG F + +N Sbjct: 1 MNKLKFLRKLAEKNGITKKEANKFLNNFIELIYQTFEETEEYKKVTLTGFGTFGAKYRNA 60 Query: 60 RPGRNPKTGEDIPITARRVVTFRPGQKLK 88 R G+NP+TG+ I I A++V TF+ + LK Sbjct: 61 REGKNPRTGKTIYIPAKKVPTFKFSKLLK 89 >UniRef50_Q1DCD2 DNA-binding protein HU n=2 Tax=Cystobacterineae RepID=Q1DCD2_MYXXD Length = 89 Score = 94.8 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 54/89 (60%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKAE+ E + + L+K+ A +++++ F I +A++ + GFG + +R + R Sbjct: 1 MTKAELVEVVAAQTRLTKKSAAQILDIVFTNIGKAVKKDARFSYPGFGTWSVRSRKARKI 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+T E + + A + + FRP ++LK+ + Sbjct: 61 RNPQTNEMMKLKASKTIGFRPAKELKNSL 89 >UniRef50_C6X423 DNA-binding protein HU-beta n=3 Tax=Flavobacteriaceae RepID=C6X423_FLAB3 Length = 96 Score = 94.8 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 1/96 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRAL-ENGEQVKLSGFGNFDLRDKNQRP 61 + K+E+ + + + G++K AK +E F + L + +V L GFG F + ++ R Sbjct: 1 MNKSELIDAMANDAGITKVAAKAALESFISNVTATLSQKDGKVSLVGFGTFSVAERAARQ 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97 G NP T + I I A+ V F+ G L V K Sbjct: 61 GINPATKKPIKIAAKTVAKFKAGADLAGSVMGGKKK 96 >UniRef50_Q72CZ7 DNA-binding protein HU, beta subunit n=2 Tax=Desulfovibrio vulgaris RepID=Q72CZ7_DESVH Length = 95 Score = 94.8 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 5/94 (5%) Query: 3 LTKAEMSEYLF---DKLG--LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDK 57 + + E+ + ++ G +++RD + +++F + L G V L G ++ Sbjct: 1 MNRKELVSAVQNTLERTGCKITRRDVERTLDVFGDVAAAELLEGGDVPLPVLGKLRSVER 60 Query: 58 NQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 R GRNP+TGE I I ARRVVTF+ G+ L+ + Sbjct: 61 AARAGRNPRTGESIAIPARRVVTFKAGKDLREAL 94 >UniRef50_C7XFY9 Integration host factor, alpha subunit n=2 Tax=Bacteroidales RepID=C7XFY9_9PORP Length = 98 Score = 94.8 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 49/92 (53%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 ++ + E+ + L ++ GL K + +V + + + GE + + GFG+F +++R Sbjct: 7 SMNRGELVQSLVEETGLPKNVVRAVVNALPTVVAKGIREGESISMKGFGSFVPWQQSERL 66 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNPKTGE++ IT R V F+ G L + Sbjct: 67 ARNPKTGEEVMITPRVSVKFKAGSDLLKELNE 98 >UniRef50_B8DRW9 Histone family protein DNA-binding protein n=11 Tax=Desulfovibrionales RepID=B8DRW9_DESVM Length = 97 Score = 94.8 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 56/92 (60%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LTKAE+ + +++K ++ + K +VE +++A++ + +SGFG F+ DK R Sbjct: 5 TLTKAEIVDAIYEKTDRNRAEVKGVVESLLGIMKQAIKKDHALLISGFGKFEAYDKKARK 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNP+T E I + R+VV FR +K ++ + + Sbjct: 65 GRNPQTDETITLPPRKVVVFRLSRKFRAELND 96 >UniRef50_A3ER44 Putative integration host factor, beta-subunit n=2 Tax=Leptospirillum sp. Group II RepID=A3ER44_9BACT Length = 98 Score = 94.4 bits (234), Expect = 9e-19, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 60/97 (61%), Gaps = 1/97 (1%) Query: 3 LTKAEMSEYLFDK-LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T+ ++ + + +K G+S D++ELV FE ++ + GE +++ FG F++ + R Sbjct: 1 MTRDDLIKRIAEKNAGISLSDSRELVLDLFESMKSVILEGESLEIRRFGVFEIHHRKPRI 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKD 98 RNP+TGE + + R+ + FRPG+ LK R++N + K Sbjct: 61 ARNPRTGEKVSVGERKSLIFRPGKILKLRMKNLTRKS 97 >UniRef50_Q02ZW9 Nucleoid DNA-binding protein n=5 Tax=Lactococcus lactis RepID=Q02ZW9_LACLS Length = 120 Score = 94.4 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 43/84 (51%) Query: 5 KAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRN 64 K E+ +Y+ D+ LSK +A + + F E I + G V +S FG F++R R + Sbjct: 4 KQELIDYVADRTELSKVNAAKAINAFVEAITYYISEGATVHISNFGTFEVRKHAARISHD 63 Query: 65 PKTGEDIPITARRVVTFRPGQKLK 88 + E I + + + FR G+ LK Sbjct: 64 VHSREKILVGEQNIPVFRAGKALK 87 >UniRef50_Q1RHD4 DNA-binding protein HU n=5 Tax=Rickettsia RepID=DBH_RICBR Length = 101 Score = 94.4 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 9/100 (9%) Query: 3 LTKAEMSEYLFDKL---------GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFD 53 + K E ++ + +K DA++ + E I A ++ V ++GFG+F Sbjct: 1 MNKTEFIAFMTEHGHHHKHQGHKSFTKADAEKALNWVLESIISATKHQHSVNITGFGSFG 60 Query: 54 LRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 ++ + R GRNPKTG + I A + F+ G KLK N Sbjct: 61 IQSRKSREGRNPKTGAKMTIPAYKQPVFKAGSKLKEACNN 100 >UniRef50_C7NGK9 Bacterial nucleoid DNA-binding protein n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NGK9_KYTSD Length = 106 Score = 94.4 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KA+++ L +G + A + V++ + + R + G V L+GFG F+ ++ R G Sbjct: 1 MNKADLARILEPIVG-GQGVASQCVDVLVDAMIREVAAGGTVTLTGFGTFERVERAPRTG 59 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASP 96 RNP+TGE + I FRP + V + S Sbjct: 60 RNPRTGEVVRIPGTAGPRFRPSPMFRGFVADPST 93 >UniRef50_UPI0001969776 hypothetical protein BACCELL_04916 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI0001969776 Length = 471 Score = 94.4 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 44/93 (47%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 L + E L +K G+ K DA+ V+ FF+ I +LEN + VK+ G G F L D R Sbjct: 5 LNIQNLIELLAEKHGMDKADAESFVKEFFQLIEESLENDKYVKIRGLGTFKLIDVESRES 64 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 N TGE I V+F P LK + Sbjct: 65 VNINTGERFEIQGHTKVSFAPEPALKDLINKPF 97 >UniRef50_O67923 Integration host factor beta subunit n=2 Tax=Aquificaceae RepID=O67923_AQUAE Length = 100 Score = 94.4 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 58/97 (59%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK+++++ L + G+S + A +V + FE ++ + NGE+V++ G G F L+ K R Sbjct: 1 MTKSDIAKELARRHGISYKKALLIVNMTFEILKAKILNGEKVEVRGLGTFKLKRKPGRFV 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 +NPKTG +I + R V ++ + L+ ++ ++E Sbjct: 61 KNPKTGIEIYVKERYVPYYKMSKLLRKKLNGDKEREE 97 >UniRef50_C8X523 Histone family protein DNA-binding protein n=2 Tax=Desulfovibrionales RepID=C8X523_DESRD Length = 98 Score = 94.4 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 54/91 (59%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LTKA++ + ++++ S+ + K +VE + +R +++ + +SGFG F+ DK R Sbjct: 5 TLTKADIVDAIYEQGQRSRAEVKNIVEDMLDIMRDSIKKDYALLISGFGKFEAYDKEPRK 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNP+T E I + R VV FR ++ ++ + Sbjct: 65 GRNPQTEEAITLPGRTVVVFRLSRRFRAELN 95 >UniRef50_UPI0001B4AA8F integration host factor, beta subunit n=1 Tax=Bacteroides fragilis 3_1_12 RepID=UPI0001B4AA8F Length = 97 Score = 94.4 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 42/91 (46%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK E+ + ++ ++K D + + F+ + + NG+ + + GFG + + + Sbjct: 1 MTKQELINTIAERAEINKIDVEHAINTAFDVAKETIANGDSIFIRGFGTLSPKRRQAKVA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RN G + + V F+P + K +V Sbjct: 61 RNITAGTSVVVPETIVPHFKPCKAFKGQVNE 91 >UniRef50_C4XGD8 HU_IHF family transcriptional regulator n=2 Tax=Desulfovibrio RepID=C4XGD8_DESMR Length = 100 Score = 94.0 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 56/91 (61%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LTKA++ +Y+++K ++ + K LV+ E ++++++ + +SGFG F+ DK R Sbjct: 5 TLTKADIVDYIYEKTERNRAEVKVLVDHLLELMKQSIKRDNSLLVSGFGKFESYDKKARK 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNP+T I + R+VV FR +K ++ + Sbjct: 65 GRNPQTNASIMLPPRKVVVFRLSRKFRAELN 95 >UniRef50_C6XIY2 Histone family protein DNA-binding protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XIY2_HIRBI Length = 103 Score = 94.0 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 42/93 (45%), Positives = 63/93 (67%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T+A++ + L ++GL+++D+ + +E E + L VKL+ FGNF +R KN R Sbjct: 5 TITRADIVDKLVSEVGLTRQDSSDYLERVLEMVCEELVADNSVKLARFGNFVVRRKNARV 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 GRNPKTG++ PITARRVVTF+P ++ RVE A Sbjct: 65 GRNPKTGKEAPITARRVVTFKPSPLMRRRVEAA 97 >UniRef50_A1AQ83 Histone family protein DNA-binding protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AQ83_PELPD Length = 126 Score = 94.0 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 48/87 (55%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + L+K A++++++F AL+ G++V + GFG F + R G Sbjct: 1 MNKTELVAKIAEGAELTKVQAEKVLDIFIASTTAALKAGDKVAIIGFGAFSAVTRKARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKS 89 RNP+TG+ + I + F PG+ LK Sbjct: 61 RNPQTGKALQIAEKTNGKFTPGKALKD 87 >UniRef50_Q4A5S4 Bacterial nucleoid DNA-binding protein n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A5S4_MYCS5 Length = 91 Score = 93.6 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 50/91 (54%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK E + + DK GL+ + + + F ++ L GE+V+LS G FD+ + +R Sbjct: 1 MTKTEFIKAVSDKTGLTVGELNRVFDGFVYVLQEQLVAGEKVQLSNLGIFDVATRAERTI 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 +N TG++ + A++VV ++P + L V Sbjct: 61 KNHFTGKEQVVAAKKVVKYKPSKYLTDVVNE 91 >UniRef50_B8DML6 Histone family protein DNA-binding protein n=5 Tax=Desulfovibrio RepID=B8DML6_DESVM Length = 95 Score = 93.6 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 3 LTKAEMSEYLFDKLG---LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQ 59 LTKAE L + L ++K A++ + F + + NG V+L G G F + ++ Sbjct: 2 LTKAEFVAALKEALPDVFVTKVSAEKAYDAFCSVLADGVANGAGVRLPGVGAFSVTERAA 61 Query: 60 RPGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 R GRNP+TG+ I I AR+ V F + L + Sbjct: 62 RTGRNPQTGQSISIPARKAVKFMAAKTLVDGLNK 95 >UniRef50_Q98RC2 DNA-BINDING PROTEIN HU n=2 Tax=Mycoplasma RepID=Q98RC2_MYCPU Length = 126 Score = 93.6 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 47/91 (51%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK E + + + +S+RD + ++ I+ +L + E+V + G F+ + K R Sbjct: 35 TMTKKEFMQKISEHSFISQRDVEAIINSMVFVIKESLISEEKVTIPMLGTFETKIKAARE 94 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 G TGE I I +RVV F+P + +K V Sbjct: 95 GIKFTTGEKILIPEKRVVKFKPTKYIKEVVN 125 >UniRef50_A6L5T8 DNA-binding protein HU n=2 Tax=Bacteroidales RepID=A6L5T8_BACV8 Length = 94 Score = 93.6 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 47/91 (51%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKAE+ + + K G + +VE E++ +LE GE V L GFG+F ++ + ++ Sbjct: 1 MTKAELCKKISAKTGCDAQTILAVVESLMVEVKESLEKGENVYLRGFGSFIVKQRAEKTT 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RN I I A + F+P ++L V Sbjct: 61 RNISKNTTIIIPAHNIPAFKPSKELVKLVNK 91 >UniRef50_A4S3Z3 Predicted protein n=2 Tax=Ostreococcus RepID=A4S3Z3_OSTLU Length = 115 Score = 93.6 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 41/93 (44%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 L K + +++ + G +K ++ + I + G++V LS FG F + + R G Sbjct: 23 LNKTTLIDHVAKETGETKASVGRVLNATLDAISATVRAGDKVALSKFGTFARKQRKARDG 82 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 RNP TG + I A +F K V+ Sbjct: 83 RNPLTGAALKIPAANYPSFSASSTFKDLVKGKK 115 >UniRef50_Q1GXQ0 Histone-like DNA-binding protein n=2 Tax=Proteobacteria RepID=Q1GXQ0_METFK Length = 90 Score = 93.2 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + S + +++ ++ L G +V L G G + ++ R G Sbjct: 1 MKKSELVALI-KPANTSAAVTESILDALGSVVQEQLARGGEVTLPGIGKLSVTERAARAG 59 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE IPI A++ F + LK V Sbjct: 60 RNPRTGEIIPIEAKKTPKFSAAKALKDAVNG 90 >UniRef50_A5ZCF1 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=A5ZCF1_9BACE Length = 435 Score = 93.2 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 48/93 (51%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 LT ++++ L K ++K+DA+ V+ FF I +ALEN + VK+ G G F L D + R Sbjct: 5 LTIQDLTDLLAAKHSMTKKDAEVFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVDSRES 64 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 N TGE I V+F P L+ + Sbjct: 65 VNVNTGERFQIKGHTKVSFSPDANLRDTINKPF 97 >UniRef50_B7B7U9 Putative uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7B7U9_9PORP Length = 99 Score = 92.8 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 44/91 (48%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + + ++ + +LG+ + V+ F E + L G V + FG+F ++ RP Sbjct: 1 MNRKDIEKITAARLGVPVTTVEPFVQAFLETVSDCLMYGHHVTIQRFGSFRRWEQTSRPV 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE + R V F PG+ L ++ Sbjct: 61 RNPRTGEPCMLEPRTSVKFNPGKTLFEKMNT 91 >UniRef50_B2ICU5 Histone family protein DNA-binding protein n=2 Tax=Beijerinckiaceae RepID=B2ICU5_BEII9 Length = 122 Score = 92.8 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 37/91 (40%), Positives = 55/91 (60%), Gaps = 1/91 (1%) Query: 4 TKAEMSEYLFDK-LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 T+A++ + ++ LS+ +E+ E+ EEI AL GE VKL FG F +R K +R G Sbjct: 21 TRADLLDAIYTSCSFLSRAQTREIFEMALEEISEALLRGETVKLRSFGLFSVRAKRERIG 80 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TG ++PI RRV+TF+ L + V Sbjct: 81 RNPRTGVEVPIKPRRVLTFKASPVLAASVNG 111 >UniRef50_C6HZV1 Putative integration host factor, alpha subunit HimA like protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HZV1_9BACT Length = 104 Score = 92.8 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 36/102 (35%), Positives = 61/102 (59%), Gaps = 5/102 (4%) Query: 3 LTKAEMSEYLFDK---LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQ 59 + + ++ EY + +GL ++ +E ++ EEI ++ GE VKL+GFG F++R + Sbjct: 1 MNRTDIVEYTRNNGGGIGLPRKAVREALDFVIEEITNSVLAGESVKLTGFGTFEVRKRED 60 Query: 60 RPGRNPKTGEDIPITARRVVTFRPGQKL--KSRVENASPKDE 99 R GRNPKTGE + I + +VV FRP + + +++SPK Sbjct: 61 RLGRNPKTGEPLLIKSHKVVVFRPTRHFWGEEAKKSSSPKTR 102 >UniRef50_A7AIP7 Putative uncharacterized protein n=2 Tax=Parabacteroides RepID=A7AIP7_9PORP Length = 91 Score = 92.8 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 51/91 (56%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + ++++ L K GL+K+D K ++ + I + ++ G+++ L GFG+F R ++ RP Sbjct: 1 MNRSQLINILAQKTGLNKKDVKRTIDEMQKLIVQEVKEGQRICLHGFGSFKPRFQSSRPA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RN K G + ++ R ++ F+ L ++ Sbjct: 61 RNLKNGTAVQLSPRTIIHFKCAPHLLEQMNK 91 >UniRef50_Q2SRR9 DNA-binding protein HU 1 n=5 Tax=Mollicutes RepID=Q2SRR9_MYCCT Length = 90 Score = 92.8 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 33/89 (37%), Positives = 54/89 (60%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK E+ E + +SK DA+++V F+ I + L G++V ++GFG F + +++ R G Sbjct: 1 MTKKELIEEIIINENISKVDAEKVVNRIFQTISKHLIEGKEVSVAGFGKFVISERSSREG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 NP TGE I I A R F+P ++LK + Sbjct: 61 VNPSTGEKIIIPASRSARFKPAKQLKESL 89 >UniRef50_B2UMR7 Histone family protein DNA-binding protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UMR7_AKKM8 Length = 101 Score = 92.8 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 53/95 (55%), Gaps = 1/95 (1%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LTK ++ + + ++ + ++V+ + I L G++V + FG F +++ + Sbjct: 4 TLTKRDLVNKISAETNFTQIEVFDIVQRAVDIISSTLAEGDRVVIRNFGTFQVKEVKPKV 63 Query: 62 GRNPKTG-EDIPITARRVVTFRPGQKLKSRVENAS 95 GRNPK +D+PI AR VV F+ G++LK +V + Sbjct: 64 GRNPKNPDQDVPIPARSVVKFKVGKELKDQVAKLT 98 >UniRef50_A6L5E9 Putative integration host factor IHF alpha subunit n=6 Tax=Bacteroides RepID=A6L5E9_BACV8 Length = 476 Score = 92.5 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 45/93 (48%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +T ++ E L +K ++K+DA+ V+ FE I AL + VK+ G G F L + R Sbjct: 5 VTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALVTEKYVKVKGLGTFKLTEVESRES 64 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 N TGE I I ++F P +K + Sbjct: 65 VNVNTGERIEIQGHTKISFTPDSSMKDLINKPF 97 >UniRef50_C4LBB5 Histone family protein DNA-binding protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBB5_TOLAT Length = 91 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 48/91 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ + ++ +K A E + + ++R L GE + + G G F + +K R G Sbjct: 1 MKKAELINAVATEMNTAKHIADEALFALGKVLQRQLVAGEPLLIPGIGTFSILNKAARLG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE + I A++ V F+ + L V Sbjct: 61 RNPQTGETVEIAAKKTVKFKAAKALADAVNE 91 >UniRef50_A6W7Q9 Histone family protein DNA-binding protein n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W7Q9_KINRD Length = 179 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAEM + L +LG ++ A VE E I+ + G++V +SGFG F+ + +N R G Sbjct: 1 MNKAEMVDALEARLG-GRKQAVSAVEAVVELIQLTVAKGDKVAISGFGTFEKQARNARTG 59 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 RNP+TGE + I V FRPG K V + Sbjct: 60 RNPRTGEAVKIKKTSVPRFRPGTAFKEIVSDTK 92 >UniRef50_C5VHN4 HimA protein n=9 Tax=Prevotella RepID=C5VHN4_9BACT Length = 97 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 48/92 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + E L + G ++ +++++V+ + + ++ E G+ V + GFG F+++ + +R Sbjct: 1 MNNKEFIAALAARTGYTQDESQKMVKTVVDMMGKSFETGDPVPVIGFGTFEVKKRLERVM 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 NP TG + + + V+ F+P +K V Sbjct: 61 VNPSTGLRMLVPPKLVLNFKPAATIKGHVRKG 92 >UniRef50_Q9RZ89 DNA-binding protein HU n=2 Tax=Deinococcus RepID=DBH_DEIRA Length = 122 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 45/84 (53%) Query: 5 KAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRN 64 K ++ E + D+ GL+K+ ++E + E + AL++G+ V L G G +++ R G Sbjct: 36 KTQLVEMVADQTGLTKKQSEEAISSMLECVVSALQSGKSVGLPGLGTLSVKETAARTGVR 95 Query: 65 PKTGEDIPITARRVVTFRPGQKLK 88 P T E I I A + V F+ LK Sbjct: 96 PGTSEKIQIPAGKKVAFKVASTLK 119 >UniRef50_B6WST8 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WST8_9DELT Length = 97 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 6/91 (6%) Query: 3 LTKAEMSEYLFDKL------GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRD 56 +TK ++ + ++ L + D + +++ + + L G +V L G G +D Sbjct: 1 MTKEDLVRNVTERSRIHLGRSLCQADVEAVLQALKDVTAQELTAGGEVPLPGLGKLKTKD 60 Query: 57 KNQRPGRNPKTGEDIPITARRVVTFRPGQKL 87 + R GRNP+TGE + I ARRVV F P +KL Sbjct: 61 RAARMGRNPRTGEAVTIPARRVVVFAPSEKL 91 >UniRef50_C9M6K0 DNA-binding protein HU n=2 Tax=Synergistaceae RepID=C9M6K0_9BACT Length = 131 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK E+ E++ + L + DA V I AL G +V+L GFG F++R ++ R G Sbjct: 21 VTKTELVEFVRENAQLKRSDAVAAVNAVVAGISGALSQGSKVQLVGFGTFEVRQRSARTG 80 Query: 63 RNPKTG-EDIPITARRVVTFRPGQKLKSRVEN 93 RNP+ + + I A++V F+ G+ L+S V+ Sbjct: 81 RNPQDPTKTVHIPAKKVPVFKAGKLLRSAVDT 112 >UniRef50_Q9XB18 DNA-binding protein HU homolog n=36 Tax=Actinomycetales RepID=DBH_MYCBO Length = 214 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 36/92 (39%), Positives = 52/92 (56%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ + L KLG +R A VE + I RA+ G+ V ++GFG F+ R + R Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNP+TGE + + V FRPG + K+ V A Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGA 92 >UniRef50_A5CZA3 Bacterial nucleoid DNA-binding protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CZA3_PELTS Length = 92 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYLFDKLGL-SKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K + E + + +AK ++ E I A N V+L GFG F +RD++ R Sbjct: 1 MIKRDFLEAVRAAGNYKTLAEAKRALDAVTEAITFASANHNTVRLRGFGAFIIRDRSPRA 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GR+ +TG+ I I A++V+ F+PG+ L+ V Sbjct: 61 GRDIRTGQPISIPAKKVIVFKPGKALRQAV 90 >UniRef50_Q0BW86 DNA-binding protein HU n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BW86_GRABC Length = 101 Score = 92.1 bits (228), Expect = 4e-18, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 47/91 (51%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + A++ + + +K +V E I L+ GE+V++SG G FD+ ++ R G Sbjct: 1 MNHADLIDKIAKSTDQTKATVDAVVSAAIETISATLKAGEEVRISGLGIFDVSERAARQG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TG I I A R FR G+ LK V Sbjct: 61 RNPQTGATIEIAATRAARFRAGKALKDAVNG 91 >UniRef50_D0RNW1 Integration host factor subunit alpha (IHF-alpha) n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNW1_9RICK Length = 95 Score = 92.1 bits (228), Expect = 4e-18, Method: Composition-based stats. Identities = 38/91 (41%), Positives = 62/91 (68%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +T+ ++ + + +LG+SK + + V+L FE I + E G +VK+S FG+FD++DK R G Sbjct: 5 VTRQDLYDLTYKELGISKNECIKFVDLVFESILKNFEEGNKVKVSLFGSFDVKDKKARIG 64 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNPKT E+ I++RRVVTF+P + L ++ Sbjct: 65 RNPKTKEEKEISSRRVVTFKPSKFLSKKINK 95 >UniRef50_A4X4D0 Histone family protein DNA-binding protein n=24 Tax=Actinomycetales RepID=A4X4D0_SALTO Length = 237 Score = 92.1 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + KAE+ E L +LG ++ A ++ E++ A+ GE+V ++GFG F+ R + R Sbjct: 17 VVNKAELIETLAVRLG-DRKTASAALDAVLTEVQAAVTKGEKVSITGFGAFEKRVRGART 75 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNP+TGE + + V TFRPG K V + Sbjct: 76 ARNPRTGEAVKVKKTSVPTFRPGTGFKEMVASG 108 >UniRef50_C7N8X2 Histone family protein DNA-binding protein n=14 Tax=Fusobacteriaceae RepID=C7N8X2_LEPBD Length = 93 Score = 92.1 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 42/73 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 ++K E + G +K+ A+ELV F + + +L G+ V+ G+G F+++++ R G Sbjct: 1 MSKKEFVDAYAKATGETKKRAEELVNQFLDTVEESLLKGDSVQFVGWGTFEVKERAARTG 60 Query: 63 RNPKTGEDIPITA 75 NP+T E+I I Sbjct: 61 INPQTKEEIQIPE 73 >UniRef50_B3R0E2 Bacterial nucleoid DNA-binding protein n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R0E2_PHYMT Length = 96 Score = 92.1 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 54/87 (62%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E + L DKL ++++ K+++ + IR L E++ ++GFG F ++ +++R G Sbjct: 1 MNKIEFIKQLSDKLETTEKEGKKIINAVIDVIRINLLQNEKILITGFGTFCVKTRSEREG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKS 89 ++PKT E I I A+++ +F+ ++ K Sbjct: 61 KHPKTREIIKIPAKKIPSFKMSKRFKD 87 >UniRef50_Q4ZXI2 Histone-like bacterial DNA-binding protein n=22 Tax=cellular organisms RepID=Q4ZXI2_PSEU2 Length = 93 Score = 92.1 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 45/93 (48%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 MALTK ++ + + + K A+ +E + LE G ++ L G + ++ R Sbjct: 1 MALTKDQLIADIAEAIDAPKTTARSALEQLGHIVADQLEKGVEITLPNIGKLKVAERPAR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNP TG I I A++V+ F P + L + Sbjct: 61 TGRNPSTGAAIEIAAKKVIKFVPAKVLTDSINK 93 >UniRef50_B3C8S3 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3C8S3_9BACE Length = 433 Score = 92.1 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 45/93 (48%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 L + E L +K G+ K DA+ V+ FF+ I +LE+ + VK+ G G F L D + R Sbjct: 5 LNIQNLIELLAEKHGMDKTDAESFVKEFFQLIEESLESDKYVKIKGLGTFKLIDVDSRES 64 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 N TGE I V+F P LK + Sbjct: 65 VNINTGERFEIQGHTKVSFTPEPTLKDLINKPF 97 >UniRef50_Q4FLU7 Bacterial DNA-binding protein n=3 Tax=Candidatus Pelagibacter RepID=Q4FLU7_PELUB Length = 102 Score = 92.1 bits (228), Expect = 6e-18, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 54/93 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 LTK ++ ++ ++G SK ++ L++ F I L+ +++KLS FG F +R K R G Sbjct: 8 LTKKDLINSIYMQIGFSKNISENLIDDFLITIVDNLKIEKKLKLSKFGTFSIRAKKSRIG 67 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 RNPKT E I+ R VV F+ ++ K V + + Sbjct: 68 RNPKTKEQTTISNRDVVLFKASKEFKDLVNSKN 100 >UniRef50_C3JSK6 DNA-binding protein (Fragment) n=1 Tax=Rhodococcus erythropolis SK121 RepID=C3JSK6_RHOER Length = 183 Score = 91.7 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 35/92 (38%), Positives = 53/92 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ + L +KLG +R A + VE + I RA+ GE V ++GFG F+ R + R Sbjct: 1 MNKAELIDVLTEKLGSDRRTATDAVEHVVDTIVRAVHRGESVTITGFGVFEQRRRAARVA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNP+TGE + + V FRPG + K+ + Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVIAGG 92 >UniRef50_C9YFH2 Integration host factor subunit beta n=2 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YFH2_9BURK Length = 103 Score = 91.7 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 52/94 (55%), Gaps = 1/94 (1%) Query: 3 LTKAEMSEYLFDKLG-LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + ++++ L ++ + K+D + V L F+E+ AL G ++++ FG R + Sbjct: 1 MNRSDLINQLANRFNEIDKKDTELAVRLIFDEMANALVKGRRIEIRNFGILQARTRPSTT 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 RNP+TGE + + R + F+ G++L+SR+ + Sbjct: 61 YRNPRTGEKLKRRSTRSIRFKEGKELRSRMAGGN 94 >UniRef50_Q02VJ4 Nucleoid DNA-binding protein n=2 Tax=Lactococcus lactis RepID=Q02VJ4_LACLS Length = 103 Score = 91.7 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 7/96 (7%) Query: 3 LTKAEMSEYLFDKLG-------LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLR 55 + K E+++ + +K G L+ ++K++V+ I L ++++ FG F+ + Sbjct: 2 VNKKELAKAISEKSGNIMKKHPLTIYESKKVVDAITASITELLVQDGKIQMIDFGTFEKK 61 Query: 56 DKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 + R G NP+ GE I I + V TF+ G+ LK V Sbjct: 62 TRASRGGFNPQVGERIQIPEKTVPTFKAGKGLKEAV 97 >UniRef50_C0QP77 DNA-binding protein HU 1 (DNA-binding protein II) (HB) n=1 Tax=Persephonella marina EX-H1 RepID=C0QP77_PERMH Length = 95 Score = 91.7 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K+++ YL ++ L K+D ++ FE + AL G++V++ G G+F ++ K R Sbjct: 1 MKKSDLLNYLIERFPYLKKKDLHTILNGTFEAMTDALSKGDKVEIRGLGSFKVKVKKSRK 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNPKTG + + +RVV F+ G+ LK ++ Sbjct: 61 ARNPKTGVVVEVPEKRVVHFKMGKVLKKKL 90 >UniRef50_Q9ZHC5 DNA-binding protein HU homolog n=31 Tax=Bacteria RepID=DBH_MYCS2 Length = 208 Score = 91.7 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 34/92 (36%), Positives = 52/92 (56%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ + L K+G +R A VE + I RA+ G+ V ++GFG F+ R + R Sbjct: 1 MNKAELIDVLTTKMGTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNP+TGE + + V FRPG + K+ + A Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVISGA 92 >UniRef50_A6L5E8 DNA-binding protein HU n=9 Tax=Bacteroides RepID=A6L5E8_BACV8 Length = 90 Score = 91.7 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 47/90 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + E L KLG + +D +LV + + L++G + + GFG F+++ K +R Sbjct: 1 MNNKEFISELSRKLGYTNKDTSQLVSSVIGVMTQELQDGNNIAIQGFGTFEVKKKLERIS 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 NP T + + I + V+T++P LK + + Sbjct: 61 INPATQQRMLIPPKLVLTYKPSVTLKEKFK 90 >UniRef50_Q0BZC9 DNA-binding protein HU n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BZC9_HYPNA Length = 91 Score = 91.7 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 51/89 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 LT ++ L + + K+ A+ +V F + + L+ G++++++G G +R R G Sbjct: 2 LTLKHLAAELSEAHEMPKKQAEAVVSDFIDRMGGHLKKGKKLRIAGLGILQVRKSPARKG 61 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP TGE+I I A + V FRP + LK RV Sbjct: 62 RNPATGEEIKIKASKKVAFRPSKDLKERV 90 >UniRef50_C0QR54 Histone family protein DNA-binding protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QR54_PERMH Length = 96 Score = 91.7 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 57/96 (59%), Gaps = 5/96 (5%) Query: 3 LTKAEMSEYLFDKLG--LSKRDAKELVELFFEEIRRALENGE---QVKLSGFGNFDLRDK 57 +TKAE+ E++ +SK+D ++V FE+I + L GE +V++SGFG F ++ + Sbjct: 1 MTKAEIVEWILKNKNPEVSKKDVSDVVNAIFEKIIQELVTGEDGHKVQISGFGTFIVKKR 60 Query: 58 NQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 + GRNPKT E+ I R ++F+ G+ LK + Sbjct: 61 APKIGRNPKTKEEKLIPERFGISFKAGKHLKESLSK 96 >UniRef50_C7M6F9 Histone family protein DNA-binding protein n=11 Tax=cellular organisms RepID=C7M6F9_CAPOD Length = 104 Score = 91.3 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 50/90 (55%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKAE+ + DKLGL K D + VE F E+ LE+G+ V L GFG+F ++ + ++ G Sbjct: 1 MTKAEIVSKISDKLGLDKNDVQLTVENFMNEVINTLESGQNVYLRGFGSFIIKTRAEKTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RN + I A + F+P + V+ Sbjct: 61 RNISKNTTLKIPAHNIPAFKPAKVFVEGVK 90 >UniRef50_B9K3N0 HNS-type DNA binding protein n=11 Tax=Alphaproteobacteria RepID=B9K3N0_AGRVS Length = 92 Score = 91.3 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 49/90 (54%) Query: 4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGR 63 T E+++ + + L K AK +VE F++I A G + + FG F L+D +R GR Sbjct: 3 TTNEIADKIAAEQNLPKAQAKTIVESVFKQITEAALAGAETSIPSFGKFKLKDTPEREGR 62 Query: 64 NPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 NP TG I I A + +TF PG+ +K + Sbjct: 63 NPATGATIKIAASKKLTFTPGKAVKDALNG 92 >UniRef50_A3EV93 Putative integration host factor, alpha subunit HimA like n=2 Tax=Leptospirillum sp. Group II RepID=A3EV93_9BACT Length = 98 Score = 90.9 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 36/88 (40%), Positives = 52/88 (59%), Gaps = 3/88 (3%) Query: 3 LTKAEMSEYLFDKLGLSKRDAK---ELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQ 59 + + ++ + + +K S+ AK ++ + EEI LENGE VK++GFG F +R N Sbjct: 1 MKRLDIVQRILEKPEYSRYTAKFVGQIFDGILEEISATLENGEDVKITGFGTFIVRKIND 60 Query: 60 RPGRNPKTGEDIPITARRVVTFRPGQKL 87 RPGRNPKTGE + I A V F P + L Sbjct: 61 RPGRNPKTGEPVLIPAHHTVLFHPSRSL 88 >UniRef50_C6IN85 DNA-binding protein HU n=2 Tax=Bacteroides RepID=C6IN85_9BACE Length = 95 Score = 90.9 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 46/85 (54%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKA++ + ++LG+ +R ++E F + ++ AL V L GFG F L+ + + Sbjct: 1 MTKADIINRVSEELGIDRRTVGLVIESFMKCVKDALGRERSVFLRGFGTFSLKKRAAKKA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKL 87 +N + I I AR++ F+P + Sbjct: 61 QNIQQHTTICIPARKIPHFKPSESF 85 >UniRef50_B9KZB7 DNA-binding protein HU 1 n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KZB7_THERP Length = 92 Score = 90.9 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 53/91 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+++ + + ++ + +V F+ I+ L GE+V ++GFG F + ++ +R G Sbjct: 1 MRKSDLIKVVAERTNARQSQVAPIVNAVFQTIQETLAKGEEVSIAGFGTFRVSERARRRG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+T E I I ARR +FRPG +LK V Sbjct: 61 RNPRTNEPIEIPARRSPSFRPGTQLKRAVAG 91 >UniRef50_C6I8R2 DNA-binding protein HU n=6 Tax=Bacteroidales RepID=C6I8R2_9BACE Length = 96 Score = 90.9 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 47/96 (48%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + E + L +LG + + EL+ +I + L+ G + + GFG F+++ K +R Sbjct: 1 MNNKEFTSELSRRLGYNTKYTSELITSLLSDITQELQEGNAIGIQGFGTFEVKKKAERIV 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKD 98 NP T + + + V+ F+P LK + + P + Sbjct: 61 INPVTKLRLLVPPKLVLAFKPSPILKDKFKETFPYE 96 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P02348 DNA-binding protein HRL53 n=11 Tax=Proteobacteri... 114 9e-25 UniRef50_Q2W3I2 Bacterial nucleoid DNA-binding protein n=6 Tax=B... 114 1e-24 UniRef50_Q9KDA5 DNA-binding protein HU-1 n=10 Tax=Bacteria RepID... 113 2e-24 UniRef50_Q87E48 DNA-binding protein HU n=403 Tax=cellular organi... 111 5e-24 UniRef50_A1WUI6 Integration host factor subunit beta n=9 Tax=cel... 111 1e-23 UniRef50_P08821 DNA-binding protein HU 1 n=13 Tax=Bacteria RepID... 110 1e-23 UniRef50_Q2W5P8 Bacterial nucleoid DNA-binding protein n=9 Tax=A... 109 2e-23 UniRef50_Q9JR30 DNA-binding protein HU-beta 2 n=24 Tax=Bacteria ... 109 3e-23 UniRef50_Q1D6M8 Integration host factor, beta subunit n=3 Tax=Pr... 109 3e-23 UniRef50_C4LFG7 Integration host factor subunit alpha n=448 Tax=... 109 3e-23 UniRef50_B8GRS4 Integration host factor subunit beta n=17 Tax=Ba... 109 4e-23 UniRef50_Q9K7K5 DNA-binding protein HU-1 n=51 Tax=root RepID=DBH... 108 4e-23 UniRef50_Q2KZM3 Integration host factor subunit alpha n=15 Tax=P... 108 5e-23 UniRef50_C9KMW2 DNA-binding protein HU n=1 Tax=Mitsuokella multa... 106 2e-22 UniRef50_A4JQB1 Histone family protein DNA-binding protein n=4 T... 106 2e-22 UniRef50_A5CWG6 DNA-binding protein HU-beta n=5 Tax=Bacteria Rep... 106 2e-22 UniRef50_Q5HFV0 DNA-binding protein HU n=74 Tax=Bacteria RepID=D... 106 3e-22 UniRef50_Q5ZUE2 HupB DNA binding protein HU-beta n=19 Tax=Bacter... 106 3e-22 UniRef50_Q58KH1 ORF98 n=3 Tax=Leptospirillum RepID=Q58KH1_9BACT 106 3e-22 UniRef50_Q2S2T0 DNA-binding protein HU n=1 Tax=Salinibacter rube... 106 3e-22 UniRef50_Q46Y54 Integration host factor subunit beta n=47 Tax=Pr... 105 4e-22 UniRef50_A9IJJ1 Integration host factor subunit beta n=23 Tax=Pr... 105 4e-22 UniRef50_Q1D6D8 Integration host factor subunit alpha n=24 Tax=D... 105 5e-22 UniRef50_B6JCN9 Integration host factor subunit beta n=51 Tax=Al... 105 6e-22 UniRef50_Q9KHS6 DNA-binding protein HU-beta n=61 Tax=Bacteria Re... 105 6e-22 UniRef50_C1DAY8 HupB1 n=3 Tax=cellular organisms RepID=C1DAY8_LARHH 104 7e-22 UniRef50_A6U5F1 Integration host factor subunit beta n=23 Tax=Al... 104 8e-22 UniRef50_C8QX16 Histone family protein DNA-binding protein n=1 T... 104 9e-22 UniRef50_Q3JBZ6 Integration host factor subunit alpha n=9 Tax=Ba... 104 1e-21 UniRef50_Q8SME4 DNA-binding protein Hu homolog n=1 Tax=Cyanidios... 104 1e-21 UniRef50_P0A128 Integration host factor subunit beta n=99 Tax=Pr... 104 1e-21 UniRef50_B1I182 Histone family protein DNA-binding protein n=66 ... 104 1e-21 UniRef50_Q7WDC5 Histone-like DNA-binding protein n=1 Tax=Bordete... 103 1e-21 UniRef50_Q9HTL0 DNA-binding protein HU-alpha n=33 Tax=Bacteria R... 103 1e-21 UniRef50_Q01YK4 Histone family protein DNA-binding protein n=1 T... 103 1e-21 UniRef50_C6BPZ9 Histone family protein DNA-binding protein n=1 T... 103 2e-21 UniRef50_Q12NT8 Integration host factor subunit alpha n=35 Tax=G... 103 2e-21 UniRef50_A7HPD7 Integration host factor subunit beta n=42 Tax=Pr... 102 3e-21 UniRef50_C8WVU7 Histone family protein DNA-binding protein n=1 T... 102 4e-21 UniRef50_Q9ZF89 DNA-binding protein HU-alpha n=51 Tax=Bacteria R... 102 4e-21 UniRef50_Q9LA96 DNA-binding protein HU-alpha n=610 Tax=cellular ... 102 4e-21 UniRef50_B1A4K2 Integration host factor subunit A-like protein n... 102 5e-21 UniRef50_Q0AI99 Histone family protein DNA-binding protein n=42 ... 102 5e-21 UniRef50_Q2J6X1 Histone-like DNA-binding protein n=4 Tax=Frankia... 102 5e-21 UniRef50_A1AW42 Histone family protein DNA-binding protein n=4 T... 101 6e-21 UniRef50_Q2SY23 Integration host factor subunit beta n=94 Tax=Pr... 101 6e-21 UniRef50_B2IE05 Histone family protein DNA-binding protein n=2 T... 101 9e-21 UniRef50_C0RGK7 Integration host factor subunit beta n=44 Tax=Al... 101 1e-20 UniRef50_Q3A4K6 BHL, histone-like protein n=10 Tax=Deltaproteoba... 100 1e-20 UniRef50_P43722 DNA-binding protein HU n=26 Tax=Bacteria RepID=D... 100 1e-20 UniRef50_A7H8A7 Histone family protein DNA-binding protein n=6 T... 100 1e-20 UniRef50_A4G858 Integration host factor subunit beta n=15 Tax=Pr... 100 1e-20 UniRef50_D1A9C1 Histone family protein DNA-binding protein n=1 T... 100 1e-20 UniRef50_A4SLS6 Integration host factor subunit beta n=17 Tax=Ga... 100 1e-20 UniRef50_P0A3I2 Integration host factor subunit beta n=3 Tax=Agr... 100 1e-20 UniRef50_P68573 SPBc2 prophage-derived DNA-binding protein HU 2 ... 100 2e-20 UniRef50_A5CCR4 Histone-like DNA-binding protein HU n=2 Tax=Orie... 100 2e-20 UniRef50_C5B6T6 Integration host factor (IHF) like DNA-binding p... 99 3e-20 UniRef50_A3VQA5 Integration host factor subunit beta n=1 Tax=Par... 99 3e-20 UniRef50_Q0AIZ2 Integration host factor subunit beta n=53 Tax=Pr... 99 3e-20 UniRef50_D1RMX6 DNA-binding protein HU-beta n=1 Tax=Legionella l... 99 3e-20 UniRef50_A1VFK7 Histone family protein DNA-binding protein n=3 T... 99 4e-20 UniRef50_B8H6A5 Integration host factor subunit beta n=10 Tax=ce... 99 4e-20 UniRef50_B6IUP4 Integration host factor subunit beta n=22 Tax=Pr... 99 5e-20 UniRef50_A1VR71 Integration host factor subunit alpha n=44 Tax=B... 99 5e-20 UniRef50_C4K6F1 HU, DNA-binding transcriptional regulator, alpha... 98 6e-20 UniRef50_A0L640 HU family DNA-binding protein n=19 Tax=root RepI... 98 1e-19 UniRef50_P05385 DNA-binding protein HU n=38 Tax=Bacteria RepID=D... 98 1e-19 UniRef50_A6TJN4 Histone family protein DNA-binding protein n=11 ... 98 1e-19 UniRef50_B8FAQ7 Histone family protein DNA-binding protein n=6 T... 98 1e-19 UniRef50_Q5LQJ4 Integration host factor subunit alpha n=14 Tax=A... 97 1e-19 UniRef50_Q7WX14 Putative histone-like protein n=2 Tax=Proteobact... 97 1e-19 UniRef50_Q3J6Y8 Histone-like DNA-binding protein n=2 Tax=Nitroso... 97 2e-19 UniRef50_A4WS11 Histone family protein DNA-binding protein n=1 T... 97 2e-19 UniRef50_C1A906 DNA-binding protein n=1 Tax=Gemmatimonas auranti... 97 2e-19 UniRef50_P0A3H3 DNA-binding protein HRL18 n=59 Tax=cellular orga... 97 2e-19 UniRef50_A8LLT5 Integration host factor subunit alpha n=28 Tax=A... 97 2e-19 UniRef50_A9AXB4 Histone family protein DNA-binding protein n=3 T... 96 2e-19 UniRef50_C3KW90 DNA-binding protein HU n=13 Tax=Bacteria RepID=C... 96 3e-19 UniRef50_Q6ANC3 Related to integration host factor, alpha subuni... 96 3e-19 UniRef50_C1D9R2 HupB2 n=1 Tax=Laribacter hongkongensis HLHK9 Rep... 96 3e-19 UniRef50_Q12ND8 Integration host factor subunit beta n=185 Tax=G... 96 4e-19 UniRef50_A7V341 Putative uncharacterized protein n=4 Tax=Bactero... 96 4e-19 UniRef50_Q5P3H7 DNA-binding protein hu-alpha n=3 Tax=Bacteria Re... 96 4e-19 UniRef50_A7AXT3 Putative uncharacterized protein n=1 Tax=Ruminoc... 96 4e-19 UniRef50_B7JAF9 Integration host factor, alpha subunit, putative... 96 5e-19 UniRef50_Q6AJG8 Probable integration host factor, alpha-subunit ... 95 5e-19 UniRef50_A1WDL1 Histone family protein DNA-binding protein n=12 ... 95 5e-19 UniRef50_D2QWH5 Histone family protein DNA-binding protein n=1 T... 95 6e-19 UniRef50_B8GX11 DNA-binding protein HU n=6 Tax=Caulobacteraceae ... 95 6e-19 UniRef50_B7B856 Putative uncharacterized protein n=1 Tax=Parabac... 95 6e-19 UniRef50_A6LB49 DNA-binding protein HU-beta n=5 Tax=Bacteroidale... 95 6e-19 UniRef50_A4A2Z0 Probable DNA-binding protein HU n=1 Tax=Blastopi... 95 7e-19 UniRef50_B0KQB3 Histone family protein DNA-binding protein n=14 ... 95 7e-19 UniRef50_B4S407 Histone family protein DNA-binding protein n=14 ... 95 7e-19 UniRef50_Q121G1 Histone-like DNA-binding protein n=12 Tax=Bacter... 95 7e-19 UniRef50_B1Y4B9 Histone family protein DNA-binding protein n=6 T... 95 8e-19 UniRef50_C9RMP4 Histone family protein DNA-binding protein n=1 T... 95 8e-19 UniRef50_C5BJS4 DNA-binding protein HU n=1 Tax=Teredinibacter tu... 95 8e-19 UniRef50_Q4FQ67 Integration host factor subunit alpha n=10 Tax=G... 94 9e-19 UniRef50_C0QI36 IhfB n=3 Tax=Deltaproteobacteria RepID=C0QI36_DESAH 94 9e-19 UniRef50_Q2IWQ7 Integration host factor subunit alpha n=17 Tax=R... 94 9e-19 UniRef50_UPI0001693F3B DNA-binding protein HU n=1 Tax=Paenibacil... 94 1e-18 UniRef50_Q9XB22 DNA-binding protein HU n=33 Tax=Firmicutes RepID... 94 1e-18 UniRef50_B6KEZ7 DNA-binding protein HU, putative n=3 Tax=Toxopla... 94 1e-18 UniRef50_C1ZKD3 Bacterial nucleoid DNA-binding protein n=2 Tax=P... 94 1e-18 UniRef50_A5EU64 Histone-like DNA-binding protein n=33 Tax=cellul... 94 1e-18 UniRef50_C1SGM2 Bacterial nucleoid DNA-binding protein n=1 Tax=D... 94 1e-18 UniRef50_Q0AZ79 Bacterial nucleoid protein Hbs n=15 Tax=Bacteria... 94 1e-18 UniRef50_C6IG13 Putative uncharacterized protein n=8 Tax=Bactero... 94 2e-18 UniRef50_Q72CZ7 DNA-binding protein HU, beta subunit n=2 Tax=Des... 94 2e-18 UniRef50_B0UCA4 Histone family protein DNA-binding protein n=3 T... 93 2e-18 UniRef50_B2RHA9 DNA-binding protein HU n=2 Tax=Porphyromonas gin... 93 2e-18 UniRef50_D1UA57 Histone family protein DNA-binding protein n=1 T... 93 2e-18 UniRef50_B0S0H5 DNA binding protein n=12 Tax=Bacteria RepID=B0S0... 93 2e-18 UniRef50_Q3IKW5 DNA-binding protein HU-alpha (HU-2), likely to p... 93 2e-18 UniRef50_B0VJA9 DNA-binding protein HU (DNA-binding protein II) ... 93 3e-18 UniRef50_A4YW83 Integration host factor subunit alpha n=41 Tax=A... 93 3e-18 UniRef50_D2Q2Y1 Histone family protein DNA-binding protein n=14 ... 93 3e-18 UniRef50_Q65SH8 Integration host factor subunit beta n=19 Tax=Pr... 93 3e-18 UniRef50_P0A3H5 DNA-binding protein HU 1 n=43 Tax=Actinobacteria... 93 3e-18 UniRef50_A0L9H9 Histone family protein DNA-binding protein n=1 T... 93 3e-18 UniRef50_D2BF20 Putative uncharacterized protein n=1 Tax=Strepto... 93 3e-18 UniRef50_A0L712 Histone family protein DNA-binding protein n=5 T... 93 4e-18 UniRef50_D2LEN1 Integration host factor, alpha subunit n=1 Tax=R... 93 4e-18 UniRef50_C4K4H0 DNA-binding protein HU-alpha (HU-2) n=2 Tax=Cand... 93 4e-18 UniRef50_Q1V2L3 Non-specific DNA-binding protein HBsu n=6 Tax=ro... 93 4e-18 UniRef50_Q39VS3 Histone-like DNA-binding protein n=5 Tax=Deltapr... 93 4e-18 UniRef50_Q01W44 Histone family protein DNA-binding protein n=3 T... 92 5e-18 UniRef50_B3R809 DNA-binding protein HU-beta, NS1 (HU-1), plays a... 92 6e-18 UniRef50_Q89B22 DNA-binding protein HU n=16 Tax=Bacteria RepID=D... 92 6e-18 UniRef50_A1AWN5 Histone family protein DNA-binding protein n=3 T... 92 6e-18 UniRef50_P19436 DNA-binding protein HU n=117 Tax=root RepID=DBH_... 92 6e-18 UniRef50_B8IKW1 Histone family protein DNA-binding protein n=1 T... 92 7e-18 UniRef50_O83278 DNA-binding protein HU n=2 Tax=Treponema pallidu... 92 7e-18 UniRef50_A6LHR2 DNA-binding protein HU-beta n=3 Tax=Bacteroidale... 91 7e-18 UniRef50_B2AK36 HU, DNA-binding transcriptional regulator, beta ... 91 8e-18 UniRef50_B1XSK3 Histone family protein DNA-binding protein n=18 ... 91 8e-18 UniRef50_B3EBV2 Histone family protein DNA-binding protein n=3 T... 91 8e-18 UniRef50_C5B569 Putative integration host factor n=1 Tax=Methylo... 91 9e-18 UniRef50_A6CAS4 Probable DNA-binding protein HU n=2 Tax=Planctom... 91 9e-18 UniRef50_B1Y0T8 Histone family protein DNA-binding protein n=6 T... 91 1e-17 UniRef50_B9KZB7 DNA-binding protein HU 1 n=1 Tax=Thermomicrobium... 91 1e-17 UniRef50_Q5HUP6 DNA-binding protein HU n=32 Tax=Campylobacterace... 91 1e-17 UniRef50_Q7NFI0 Gll3545 protein n=1 Tax=Gloeobacter violaceus Re... 91 1e-17 UniRef50_UPI0001969776 hypothetical protein BACCELL_04916 n=1 Ta... 91 1e-17 UniRef50_Q0C4A3 DNA-binding protein HU n=3 Tax=Hyphomonadaceae R... 91 1e-17 UniRef50_C3M8C0 DNA-binding protein n=1 Tax=Candidatus Hamiltone... 91 1e-17 UniRef50_C7XFY9 Integration host factor, alpha subunit n=2 Tax=B... 91 1e-17 UniRef50_B5YLD8 Integration host factor alpha-subunit n=1 Tax=Th... 91 1e-17 UniRef50_B6WST8 Putative uncharacterized protein n=1 Tax=Desulfo... 90 2e-17 UniRef50_P17615 DNA-binding protein HB1 n=19 Tax=Actinobacterida... 90 2e-17 UniRef50_Q30VZ6 Histone-like DNA-binding protein n=1 Tax=Desulfo... 90 2e-17 UniRef50_C8XUL7 Putative DNA-binding protein n=1 Tax=Shigella ph... 90 2e-17 UniRef50_C9LHL9 Putative integration host factor IHF alpha subun... 90 2e-17 UniRef50_B2S525 Integration host factor subunit alpha n=48 Tax=A... 90 2e-17 UniRef50_P29214 DNA-binding protein HU homolog n=6 Tax=cellular ... 90 2e-17 UniRef50_C7NGK9 Bacterial nucleoid DNA-binding protein n=1 Tax=K... 90 2e-17 UniRef50_B7B7U9 Putative uncharacterized protein n=1 Tax=Parabac... 89 3e-17 UniRef50_A0LI64 Histone family protein DNA-binding protein n=6 T... 89 3e-17 UniRef50_D1CFB6 Histone family protein DNA-binding protein n=1 T... 89 3e-17 UniRef50_A6Q378 DNA-binding protein HU n=4 Tax=Epsilonproteobact... 89 3e-17 UniRef50_UPI0001BC7A84 putative histone-like DNA-binding protein... 89 3e-17 UniRef50_Q9ZHC5 DNA-binding protein HU homolog n=31 Tax=Bacteria... 89 3e-17 UniRef50_B8DRW9 Histone family protein DNA-binding protein n=11 ... 89 4e-17 UniRef50_Q9XB18 DNA-binding protein HU homolog n=36 Tax=Actinomy... 89 4e-17 UniRef50_C8X523 Histone family protein DNA-binding protein n=2 T... 89 4e-17 UniRef50_C9RKN2 Histone family protein DNA-binding protein n=1 T... 89 4e-17 UniRef50_A6L5E9 Putative integration host factor IHF alpha subun... 89 4e-17 UniRef50_A5ZCF1 Putative uncharacterized protein n=2 Tax=Bactero... 89 5e-17 UniRef50_C3JSK6 DNA-binding protein (Fragment) n=1 Tax=Rhodococc... 89 5e-17 UniRef50_A7AIP7 Putative uncharacterized protein n=2 Tax=Parabac... 89 5e-17 UniRef50_B7AFK0 Putative uncharacterized protein n=1 Tax=Bactero... 89 5e-17 UniRef50_B3C8S3 Putative uncharacterized protein n=1 Tax=Bactero... 89 5e-17 UniRef50_Q1GXQ0 Histone-like DNA-binding protein n=2 Tax=Proteob... 88 6e-17 UniRef50_Q1NPH8 Histone-like bacterial DNA-binding protein n=4 T... 88 6e-17 UniRef50_UPI0001B4AA8F integration host factor, beta subunit n=1... 88 6e-17 UniRef50_C7Q397 Histone family protein DNA-binding protein n=1 T... 88 7e-17 UniRef50_C4XHM4 HU_IHF family transcriptional regulator n=1 Tax=... 88 8e-17 UniRef50_A5CWF3 Integration host factor, alpha subunit n=2 Tax=s... 88 8e-17 UniRef50_A3EUM1 Putative histone-like DNA-binding protein n=2 Ta... 88 1e-16 UniRef50_B8II37 Histone family protein DNA-binding protein n=1 T... 88 1e-16 UniRef50_C0GE87 Histone family protein DNA-binding protein n=1 T... 88 1e-16 UniRef50_C0QI67 IhfA n=1 Tax=Desulfobacterium autotrophicum HRM2... 88 1e-16 UniRef50_B4UEN5 Histone family protein DNA-binding protein n=3 T... 88 1e-16 UniRef50_D1XWL2 DNA-binding protein HU n=1 Tax=Prevotella bivia ... 88 1e-16 UniRef50_Q5LM20 DNA-binding protein HU n=1 Tax=Ruegeria pomeroyi... 87 2e-16 UniRef50_C6P6T8 Histone family protein DNA-binding protein n=1 T... 87 2e-16 UniRef50_B0NU55 Putative uncharacterized protein n=1 Tax=Bactero... 87 2e-16 UniRef50_A5CZB4 Bacterial nucleoid DNA-binding protein n=1 Tax=P... 87 2e-16 UniRef50_C4XGD8 HU_IHF family transcriptional regulator n=2 Tax=... 87 2e-16 UniRef50_C9MQK2 Putative integration host factor IHF alpha subun... 86 2e-16 UniRef50_A1S612 DNA-binding protein, HU family n=2 Tax=Shewanell... 86 3e-16 UniRef50_Q1Q201 Putative uncharacterized protein n=1 Tax=Candida... 86 3e-16 UniRef50_B7CAU3 Putative uncharacterized protein n=1 Tax=Eubacte... 86 3e-16 UniRef50_C9YFH2 Integration host factor subunit beta n=2 Tax=Cur... 86 3e-16 UniRef50_Q4ZXI2 Histone-like bacterial DNA-binding protein n=22 ... 86 3e-16 UniRef50_C4K783 Integration host factor (IHF), DNA-binding prote... 86 4e-16 UniRef50_B3JJB8 Putative uncharacterized protein n=1 Tax=Bactero... 86 4e-16 UniRef50_D1QUA7 Putative integration host factor IHF alpha subun... 86 4e-16 UniRef50_Q1DCD2 DNA-binding protein HU n=2 Tax=Cystobacterineae ... 86 5e-16 UniRef50_C8QYJ3 Histone family protein DNA-binding protein n=1 T... 86 5e-16 UniRef50_Q8UG61 Integration host factor subunit alpha n=29 Tax=A... 86 5e-16 UniRef50_B7BF96 Putative uncharacterized protein n=1 Tax=Parabac... 86 5e-16 UniRef50_A5CZA3 Bacterial nucleoid DNA-binding protein n=1 Tax=P... 85 6e-16 UniRef50_B5ERD0 Histone family protein DNA-binding protein n=2 T... 85 6e-16 UniRef50_A4S3Z3 Predicted protein n=2 Tax=Ostreococcus RepID=A4S... 85 6e-16 UniRef50_Q1J3J9 Histone-like protein DNA-binding protein n=4 Tax... 85 7e-16 UniRef50_C6HU01 Histone family protein DNA-binding protein n=3 T... 85 8e-16 UniRef50_A7HII4 Histone family protein DNA-binding protein n=4 T... 85 9e-16 UniRef50_C2M9J7 DNA-binding protein HU n=1 Tax=Porphyromonas uen... 84 9e-16 UniRef50_B2UMR7 Histone family protein DNA-binding protein n=1 T... 84 1e-15 UniRef50_Q6KHG3 Bacterial nucleoid DNA-binding protein HU n=2 Ta... 84 1e-15 UniRef50_B8DML6 Histone family protein DNA-binding protein n=5 T... 84 1e-15 UniRef50_Q4A5S4 Bacterial nucleoid DNA-binding protein n=1 Tax=M... 84 1e-15 UniRef50_C6XF17 Integration host factor subunit alpha n=1 Tax=Ca... 84 1e-15 UniRef50_A3ER44 Putative integration host factor, beta-subunit n... 84 1e-15 UniRef50_B9K3N0 HNS-type DNA binding protein n=11 Tax=Alphaprote... 84 1e-15 UniRef50_A7AMR9 Putative uncharacterized protein n=1 Tax=Babesia... 84 1e-15 UniRef50_C4LBB5 Histone family protein DNA-binding protein n=1 T... 84 1e-15 UniRef50_P64387 Probable DNA-binding protein HU n=12 Tax=Chlamyd... 84 1e-15 UniRef50_Q3BZX6 Histone-like family DNA-binding protein n=1 Tax=... 84 1e-15 UniRef50_D1W7T0 DNA-binding protein HU n=2 Tax=Prevotella RepID=... 84 1e-15 UniRef50_Q0BW86 DNA-binding protein HU n=1 Tax=Granulibacter bet... 84 2e-15 UniRef50_C6IB23 HU family DNA-binding protein n=6 Tax=Bacteroide... 84 2e-15 UniRef50_A4X4D0 Histone family protein DNA-binding protein n=24 ... 84 2e-15 UniRef50_B7B9I2 Putative uncharacterized protein n=3 Tax=Parabac... 83 2e-15 UniRef50_C7H232 DNA binding protein HU n=3 Tax=Ruminococcaceae R... 83 2e-15 UniRef50_Q92J57 DNA-binding protein HU n=10 Tax=spotted fever gr... 83 2e-15 UniRef50_B9XSG3 Histone family protein DNA-binding protein n=4 T... 83 2e-15 UniRef50_B2ICU5 Histone family protein DNA-binding protein n=2 T... 83 2e-15 UniRef50_B9JPN0 Integration host factor alpha-subunit protein n=... 83 2e-15 UniRef50_A6L5T8 DNA-binding protein HU n=2 Tax=Bacteroidales Rep... 83 2e-15 UniRef50_A5VG36 Histone family protein DNA-binding protein n=2 T... 83 2e-15 UniRef50_D1PVJ0 Putative uncharacterized protein n=1 Tax=Prevote... 83 2e-15 UniRef50_B5YH73 DNA-binding protein HU 1 n=1 Tax=Thermodesulfovi... 83 3e-15 UniRef50_O67923 Integration host factor beta subunit n=2 Tax=Aqu... 83 3e-15 UniRef50_C6X423 DNA-binding protein HU-beta n=3 Tax=Flavobacteri... 83 3e-15 UniRef50_C6XIY2 Histone family protein DNA-binding protein n=1 T... 83 4e-15 UniRef50_B0SI26 DNA-binding protein, IHF-related n=3 Tax=Bacteri... 83 4e-15 UniRef50_D2LFF2 Histone family protein DNA-binding protein n=1 T... 82 5e-15 UniRef50_Q602W2 Prophage MuMc02, DNA-binding protein HU n=2 Tax=... 82 6e-15 UniRef50_A6W7Q9 Histone family protein DNA-binding protein n=1 T... 82 6e-15 UniRef50_Q1RHD4 DNA-binding protein HU n=5 Tax=Rickettsia RepID=... 82 7e-15 UniRef50_Q3SRD9 Histone-like DNA-binding protein n=6 Tax=Bacteri... 81 8e-15 UniRef50_A1AQ83 Histone family protein DNA-binding protein n=1 T... 81 8e-15 UniRef50_UPI0001BC8A49 single-stranded binding protein n=2 Tax=P... 81 8e-15 UniRef50_Q02VJ4 Nucleoid DNA-binding protein n=2 Tax=Lactococcus... 81 8e-15 UniRef50_A4EV14 DNA-binding protein HU n=1 Tax=Roseobacter sp. S... 81 8e-15 UniRef50_Q02ZW9 Nucleoid DNA-binding protein n=5 Tax=Lactococcus... 81 8e-15 Sequences not found previously or not previously below threshold: >UniRef50_P02348 DNA-binding protein HRL53 n=11 Tax=Proteobacteria RepID=DBH5_RHILE Length = 91 Score = 114 bits (286), Expect = 9e-25, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 52/91 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + +K GL+K DA V+ F+ ++ L+N ++L+GFG+F + + G Sbjct: 1 MNKNELVSAVAEKAGLTKSDAASAVDAVFDVVQAELKNKGDIRLAGFGSFTVSHRAATKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP TG ++ I AR V F PG+ LK V Sbjct: 61 RNPSTGAEVDIPARNVPKFTPGKGLKDAVNG 91 >UniRef50_Q2W3I2 Bacterial nucleoid DNA-binding protein n=6 Tax=Bacteria RepID=Q2W3I2_MAGSA Length = 136 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 52/90 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ + GLSK DA + V+ FE I AL+ G++V+L GFG F + + G Sbjct: 47 VNKNDLVTAVAGAAGLSKADAAKAVDGVFEAITSALKGGDEVRLVGFGTFAVASRAASEG 106 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TGE I I A + F+ G+ LK ++ Sbjct: 107 RNPRTGEKISIPASKQPKFKAGKGLKDGIQ 136 >UniRef50_Q9KDA5 DNA-binding protein HU-1 n=10 Tax=Bacteria RepID=DBH1_BACHD Length = 90 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 37/90 (41%), Positives = 61/90 (67%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ + ++ LSK+DA + V+ FE I AL+ G +V+L GFG+F++R+++ R G Sbjct: 1 MNKTDLINAVAEQAELSKKDASKAVDAVFESITGALKEGGKVQLVGFGSFEVRERSARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TGE+I I A + F+PG++LK V Sbjct: 61 RNPQTGEEIEIPATKNPAFKPGKQLKDAVN 90 >UniRef50_Q87E48 DNA-binding protein HU n=403 Tax=cellular organisms RepID=DBH_XYLFT Length = 94 Score = 111 bits (279), Expect = 5e-24, Method: Composition-based stats. Identities = 37/92 (40%), Positives = 55/92 (59%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + LSK +A ++ EI AL+ G+ V L GFG F +R + +RPG Sbjct: 1 MNKTELIDGVAAAANLSKVEAGRAIDAVVNEITEALKEGDSVTLVGFGTFQVRQRAERPG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNPKTGE I I A +F+PG+ LK V+++ Sbjct: 61 RNPKTGEPIMIAASNNPSFKPGKALKDAVKSS 92 >UniRef50_A1WUI6 Integration host factor subunit beta n=9 Tax=cellular organisms RepID=IHFB_HALHL Length = 102 Score = 111 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 34/93 (36%), Positives = 60/93 (64%), Gaps = 1/93 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ E + K L+ +D ++ V+ E + L NG+++++ GFG+F L + R Sbjct: 1 MTKSELIEAIASKQPHLAHKDVEDAVKKMLEHMSETLANGKRIEIRGFGSFSLHHRPARM 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 GRNPKTGE + + A+ V F+PG++L+ RV ++ Sbjct: 61 GRNPKTGEPVALPAKYVPHFKPGKELRERVNSS 93 >UniRef50_P08821 DNA-binding protein HU 1 n=13 Tax=Bacteria RepID=DBH1_BACSU Length = 92 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 39/91 (42%), Positives = 62/91 (68%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + LSK+DA + V+ F+ I AL+NG++++L GFGNF++R+++ R G Sbjct: 1 MNKTELINAVAEASELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE+I I A +V F+PG+ LK V Sbjct: 61 RNPQTGEEIEIPASKVPAFKPGKALKDAVAG 91 >UniRef50_Q2W5P8 Bacterial nucleoid DNA-binding protein n=9 Tax=Alphaproteobacteria RepID=Q2W5P8_MAGSA Length = 117 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 49/91 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ + + GLSK A +++ F I AL+ G+ V+L GFG+F + + + G Sbjct: 27 MNKQDLVNKVAELSGLSKAAADNVIDATFAAITSALKAGDDVRLVGFGSFSVTQRAAKEG 86 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TG I I A + F G+ LK V Sbjct: 87 RNPRTGATIKIAASKAPKFTAGKGLKDAVNG 117 >UniRef50_Q9JR30 DNA-binding protein HU-beta 2 n=24 Tax=Bacteria RepID=DBHC_NEIMA Length = 91 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 37/91 (40%), Positives = 51/91 (56%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + + D+ LSKR A E V F + + L++G V L GFG F +R G Sbjct: 1 MNKSELIQAIADEAELSKRAAAEFVNAFVSVVTQELKDGNDVTLVGFGTFHAAQSAERQG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNPKTGE + I AR+ FR G+ LK V Sbjct: 61 RNPKTGEPLTIAARKTPKFRSGKALKDAVNG 91 >UniRef50_Q1D6M8 Integration host factor, beta subunit n=3 Tax=Proteobacteria RepID=Q1D6M8_MYXXD Length = 127 Score = 109 bits (272), Expect = 3e-23, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 59/93 (63%), Gaps = 1/93 (1%) Query: 3 LTKAEMSEYLFDK-LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T++E+ E + ++ + +R+ + +V FEE+ +AL G +++L GFG F +R + R Sbjct: 1 MTRSELIERIVERATHVPRREVEAIVHAVFEEMSQALIAGRRIELRGFGVFCVRTRRART 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 GRNPKTG+ + + ARR ++F G+ L+ R+ Sbjct: 61 GRNPKTGQRVSVPARRTLSFAAGKDLRERLNAP 93 >UniRef50_C4LFG7 Integration host factor subunit alpha n=448 Tax=cellular organisms RepID=IHFA_TOLAT Length = 106 Score = 109 bits (272), Expect = 3e-23, Method: Composition-based stats. Identities = 81/99 (81%), Positives = 93/99 (93%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 MALTKA+++E+LF +LG+SKRDAKELVE FFE+IR ALE+GEQVK+SGFGNF+LR KN+R Sbjct: 1 MALTKADIAEHLFTELGISKRDAKELVETFFEDIRLALESGEQVKISGFGNFELRTKNER 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVE+A P DE Sbjct: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVEHARPVDE 99 >UniRef50_B8GRS4 Integration host factor subunit beta n=17 Tax=Bacteria RepID=IHFB_THISH Length = 96 Score = 109 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 34/96 (35%), Positives = 58/96 (60%), Gaps = 1/96 (1%) Query: 3 LTKAEMSEYLFDK-LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ E L K L+ +D + V+ E + +AL G+++++ GFG+F L + R Sbjct: 1 MTKSELIEILARKQSHLAYKDVELSVKTMLEHLSQALATGDRIEIRGFGSFSLHFRPPRV 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97 GRNPKTGE + + + V F+PG++L+ RV + Sbjct: 61 GRNPKTGETVSLPGKYVPHFKPGKELRERVNAVHEQ 96 >UniRef50_Q9K7K5 DNA-binding protein HU-1 n=51 Tax=root RepID=DBH2_BACHD Length = 90 Score = 108 bits (271), Expect = 4e-23, Method: Composition-based stats. Identities = 36/90 (40%), Positives = 59/90 (65%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + ++ +SK+DA E+V F+ I +L G+ V+L GFGNF++R++ R G Sbjct: 1 MNKTELIHQVAERTQMSKKDAGEVVNTVFDVIAESLAQGDSVQLIGFGNFEVRERAARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TGE+I I A + F+ G++LK V+ Sbjct: 61 RNPQTGEEIDIAATKTPAFKAGKQLKDAVK 90 >UniRef50_Q2KZM3 Integration host factor subunit alpha n=15 Tax=Proteobacteria RepID=IHFA_BORA1 Length = 116 Score = 108 bits (271), Expect = 5e-23, Method: Composition-based stats. Identities = 64/98 (65%), Positives = 77/98 (78%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LTKAE++E LF+++GL+KR+AK++V+ FFEEIR AL G+ VKLSGFGNF +RDK RP Sbjct: 11 TLTKAELAELLFERVGLNKREAKDIVDTFFEEIREALARGDSVKLSGFGNFQVRDKPPRP 70 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 GRNPKTGE IPI ARRVVTF QKLKS VE + E Sbjct: 71 GRNPKTGETIPIAARRVVTFHASQKLKSTVEQSGNPAE 108 >UniRef50_C9KMW2 DNA-binding protein HU n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KMW2_9FIRM Length = 91 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 59/90 (65%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + +K GL+K+DA++ V FE I++AL G++V++ GFG F++++++ R G Sbjct: 1 MNKNELVASVAEKAGLTKKDAEKAVGAIFESIQQALVEGDKVQVIGFGTFEVKERSARAG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+T E I I A + F+ G+ LK V Sbjct: 61 RNPRTNETIQIPASKNPAFKAGKALKDAVN 90 >UniRef50_A4JQB1 Histone family protein DNA-binding protein n=4 Tax=Bacteria RepID=A4JQB1_BURVG Length = 92 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 48/92 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + G+SK DA + V+ + I A+ E V+L GFG F ++ R G Sbjct: 1 MNKQELIDAVAAGAGVSKSDASKTVQAVLDAITDAVSRDEAVQLIGFGAFSRGQRSARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNP TGE+I I A V F G+ K V + Sbjct: 61 RNPTTGEEIAIAAANTVKFAAGKAFKDAVNGS 92 >UniRef50_A5CWG6 DNA-binding protein HU-beta n=5 Tax=Bacteria RepID=A5CWG6_VESOH Length = 91 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 53/91 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+++ + L+K D+ ++ I AL +G+ V ++GFG+F +RD+ R G Sbjct: 1 MNKSDLVAVISQISNLTKADSARALDAMTGAITSALTSGDNVAITGFGSFVVRDRAARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE I I A +V F+ G+ LK V + Sbjct: 61 RNPQTGEAIQIKASKVPAFKAGKLLKESVNS 91 >UniRef50_Q5HFV0 DNA-binding protein HU n=74 Tax=Bacteria RepID=DBH_STAAC Length = 90 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 60/90 (66%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ + ++ L+K++A V+ FE I+ +L GE+V+L GFGNF++R++ R G Sbjct: 1 MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQNSLAKGEKVQLIGFGNFEVRERAARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TG++I I A +V F+ G+ LK V+ Sbjct: 61 RNPQTGKEIDIPASKVPAFKAGKALKDAVK 90 >UniRef50_Q5ZUE2 HupB DNA binding protein HU-beta n=19 Tax=Bacteria RepID=Q5ZUE2_LEGPH Length = 100 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 35/92 (38%), Positives = 56/92 (60%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + + GL+K DA ++E F + L+ G+QV + GFG+F +++ R G Sbjct: 9 MNKSELVDAIASGSGLTKADASRVLETFMATVTDVLKKGDQVVIPGFGSFSTGNRSARTG 68 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNP+TG+ I I A RV F+ G+ LK V+ A Sbjct: 69 RNPQTGKTIQIKASRVAKFKAGKNLKEAVQQA 100 >UniRef50_Q58KH1 ORF98 n=3 Tax=Leptospirillum RepID=Q58KH1_9BACT Length = 98 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 35/89 (39%), Positives = 52/89 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ E + D LSK+D + +++ F I +L+ GE+V L GFG F+ K R G Sbjct: 1 MNKTELVESVSDSSHLSKKDVQAVLDGFLATIGDSLKKGEKVALVGFGTFETVKKEARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TGE + I AR V F G+ L+ + Sbjct: 61 RNPRTGEALEIPARTVPKFSAGKSLREAI 89 >UniRef50_Q2S2T0 DNA-binding protein HU n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2T0_SALRD Length = 100 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 36/99 (36%), Positives = 59/99 (59%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M++TKA++ + + D GL+K + + +VE F +R A++ G +++L FG F+++ + R Sbjct: 1 MSMTKADLIDQIADGTGLTKIETRAVVEGFMTAVRGAMKEGRRIELREFGVFEVQHRAPR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 GRNP+T E + I R FRP KL V+ A DE Sbjct: 61 TGRNPQTNEPVEIEDRYKPVFRPSDKLSEAVDAAHKADE 99 >UniRef50_Q46Y54 Integration host factor subunit beta n=47 Tax=Proteobacteria RepID=IHFB_RALEJ Length = 137 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 1/97 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ E L + L RDA V+ + + AL +G ++++ GFG+F L + R Sbjct: 1 MTKSELVEKLAARFPQLLLRDADISVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKD 98 GRNPK+GE + + +RV F+ G++L+ RV+ Sbjct: 61 GRNPKSGERVLVPEKRVPHFKAGKELRERVDRNLTPS 97 >UniRef50_A9IJJ1 Integration host factor subunit beta n=23 Tax=Proteobacteria RepID=IHFB_BORPD Length = 119 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 57/90 (63%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ L + L+ RD V+ + + +AL +G+++++ GFG+F L ++ R Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRV 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNPK+GE + + ++V F+ G++L+ RV Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERV 90 >UniRef50_Q1D6D8 Integration host factor subunit alpha n=24 Tax=Deltaproteobacteria RepID=IHFA_MYXXD Length = 129 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 47/97 (48%), Positives = 75/97 (77%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKA++ E +++K+G SK+++ E+VEL F+ ++ LE G+++K+SGFGNF +R K R G Sbjct: 1 MTKADIIEGVYEKVGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARVG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 RNP+TG++I I+ARRV+TFRP Q LKS + +P ++ Sbjct: 61 RNPQTGKEIEISARRVLTFRPSQVLKSALNGEAPPED 97 >UniRef50_B6JCN9 Integration host factor subunit beta n=51 Tax=Alphaproteobacteria RepID=IHFB_OLICO Length = 106 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 56/92 (60%), Gaps = 1/92 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K+E+ + + + L +RD + +V EEI AL G++V+L GFG F ++ + R Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVSALARGDRVELRGFGAFSVKHRPARA 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNP+TGE +P+ + V F+ G++++ R+ Sbjct: 61 GRNPRTGEHVPVEQKSVPFFKTGKEMRERLNR 92 >UniRef50_Q9KHS6 DNA-binding protein HU-beta n=61 Tax=Bacteria RepID=DBHB_PSEF5 Length = 90 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 48/90 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + + L K A ++ E + AL+ G+ V L GFG F + D+ R G Sbjct: 1 MNKSELIDAIAASADLPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARIG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TG+ + I A + F+ G+ LK V Sbjct: 61 RNPQTGKTLEIAAAKKPGFKAGKALKEAVN 90 >UniRef50_C1DAY8 HupB1 n=3 Tax=cellular organisms RepID=C1DAY8_LARHH Length = 89 Score = 104 bits (261), Expect = 7e-22, Method: Composition-based stats. Identities = 32/89 (35%), Positives = 53/89 (59%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + + L K A + ++ E + AL+ G+ V L GFG+F + ++ +R G Sbjct: 1 MNKSELIDAIAASADLPKAAAGKALDGMIEALTEALKKGDTVTLVGFGSFYVGERAERKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNPKTGE+I I + + FRPG+ LK + Sbjct: 61 RNPKTGEEITIPSAKTPKFRPGKALKDAL 89 >UniRef50_A6U5F1 Integration host factor subunit beta n=23 Tax=Alphaproteobacteria RepID=IHFB_SINMW Length = 103 Score = 104 bits (261), Expect = 8e-22, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 56/98 (57%), Gaps = 1/98 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K+E+ + + + L RD + +V +EI AL G +V+L GFG F ++++ R Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 GRNP+TG+ + + + V F+ G++L+ R+ ++ Sbjct: 61 GRNPRTGDSVFVEEKWVPFFKTGKELRERLNPGMNGND 98 >UniRef50_C8QX16 Histone family protein DNA-binding protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QX16_9DELT Length = 95 Score = 104 bits (260), Expect = 9e-22, Method: Composition-based stats. Identities = 41/93 (44%), Positives = 62/93 (66%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M LTKA++ + ++ + LSK A E+VE+F + +L+ GE + LSGFG F ++ KN R Sbjct: 1 MTLTKADLIQEVYQRHNLSKSQATEVVEIFLSVAKDSLQEGEDLLLSGFGKFSVKQKNSR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNP+TGE++ + RRV+TF+P L+ RV Sbjct: 61 RGRNPQTGEELMLAPRRVITFKPSGLLRQRVNG 93 >UniRef50_Q3JBZ6 Integration host factor subunit alpha n=9 Tax=Bacteria RepID=IHFA_NITOC Length = 99 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 73/92 (79%), Positives = 86/92 (93%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 MALTKA+M+E L+ +LGL+KR+AKE+VE+FFE+IR ALE GE VKLSGFGNF+LRDK +R Sbjct: 1 MALTKADMTETLYQELGLNKREAKEIVEMFFEDIRCALEQGEAVKLSGFGNFELRDKGER 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 PGRNPKTGE+IPITARRVVTFRPGQKLK+RVE Sbjct: 61 PGRNPKTGEEIPITARRVVTFRPGQKLKARVE 92 >UniRef50_Q8SME4 DNA-binding protein Hu homolog n=1 Tax=Cyanidioschyzon merolae RepID=Q8SME4_CYAME Length = 112 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 36/95 (37%), Positives = 56/95 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + +K+GLSK+ +E++ +I + L G++VKL GFG F + + R G Sbjct: 1 MDKTELISAVAEKVGLSKKQVREVINEILSQIAKQLVLGQKVKLVGFGTFSKQYRAARDG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97 RNP+TGE + I R VV F PG LK +V+ + Sbjct: 61 RNPRTGERLIIPERHVVVFSPGSDLKQQVQEPMQQ 95 >UniRef50_P0A128 Integration host factor subunit beta n=99 Tax=Proteobacteria RepID=IHFB_PSEPK Length = 100 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 57/92 (61%), Gaps = 1/92 (1%) Query: 3 LTKAEMSEYLFDKLGL-SKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ E + GL S +D + ++ E++ + L G+++++ GFG+F L + R Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNPKTG+ + + + V F+PG++L+ RV Sbjct: 61 GRNPKTGQSVSLEGKFVPHFKPGKELRDRVNE 92 >UniRef50_B1I182 Histone family protein DNA-binding protein n=66 Tax=Bacteria RepID=B1I182_DESAP Length = 91 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 37/89 (41%), Positives = 59/89 (66%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ + +K L+K+DA++ + E IR AL G++V+L GFG F+ R++ R G Sbjct: 1 MNKAELISSVAEKTNLTKKDAEKALSAMLESIREALSAGDKVQLVGFGTFETRERAARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TGE+I I A +V F+ G++L+ V Sbjct: 61 RNPQTGEEIDIAATKVPVFKAGKELRESV 89 >UniRef50_Q7WDC5 Histone-like DNA-binding protein n=1 Tax=Bordetella bronchiseptica RepID=Q7WDC5_BORBR Length = 93 Score = 103 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 48/92 (52%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M+LTK ++ L + G S+RD + +V++ I L GE+ L G G F + R Sbjct: 1 MSLTKKDLIATLSYETGFSRRDTENMVDVLTSTISEQLIAGEEFTLPGVGKFSTSQRAAR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNP+TGE + I A V F + LK +V Sbjct: 61 TGRNPQTGEPVEIAASVAVKFSASKTLKDQVN 92 >UniRef50_Q9HTL0 DNA-binding protein HU-alpha n=33 Tax=Bacteria RepID=DBHA_PSEAE Length = 90 Score = 103 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 49/90 (54%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E++ + +K L+K A ++ +EI AL + V L GFG F R + R G Sbjct: 1 MRKPELAAAIAEKADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 +NP+TG+ + I A V F+PG+ L+ V Sbjct: 61 KNPQTGQPVKIKASNTVAFKPGKALRDAVN 90 >UniRef50_Q01YK4 Histone family protein DNA-binding protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01YK4_SOLUE Length = 112 Score = 103 bits (258), Expect = 1e-21, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 62/92 (67%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKA++ E + + +++++++ +VE F+ I R+L G+++++ GFG+F R + R G Sbjct: 1 MTKADLIEEVSRVVEMTRKESEVIVEAIFDSIVRSLRTGDKIEIRGFGSFRTRQRQPRIG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNPKTG + + A+++ F+P ++LK V N+ Sbjct: 61 RNPKTGARVEVPAKKIPYFKPSKELKDVVNNS 92 >UniRef50_C6BPZ9 Histone family protein DNA-binding protein n=1 Tax=Ralstonia pickettii 12D RepID=C6BPZ9_RALP1 Length = 94 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 46/91 (50%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + + ++++ + D+ S ++ F + + A+ +G+ V++ GFG F + R G Sbjct: 1 MNRKDLAKAIADRSNTSSAQVMRWLDAFEKVVTDAVASGDVVQIMGFGTFSTSRRRARNG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 NP TGE+I + A V F G +L+ V Sbjct: 61 HNPGTGEEIQVPAVTTVRFSAGSRLRQAVNR 91 >UniRef50_Q12NT8 Integration host factor subunit alpha n=35 Tax=Gammaproteobacteria RepID=IHFA_SHEDO Length = 99 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 81/99 (81%), Positives = 91/99 (91%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 MALTKAEM+E+LF+ LGL+KR AKE+VE FFEEIR ALE+GEQVKLSGFGNFDLRDKNQR Sbjct: 1 MALTKAEMAEHLFETLGLNKRVAKEMVESFFEEIREALESGEQVKLSGFGNFDLRDKNQR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 PGRNPKTGEDIPI+ARRVVTFRPGQKLK+RVE A+ + Sbjct: 61 PGRNPKTGEDIPISARRVVTFRPGQKLKARVEAANSGKK 99 >UniRef50_A7HPD7 Integration host factor subunit beta n=42 Tax=Proteobacteria RepID=IHFB_PARL1 Length = 110 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 1/98 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K+E+ L L +RD + +V F+EI AL G++V+L GFG F ++ + R Sbjct: 1 MIKSELVARLAQANPHLYQRDVERIVSTIFDEISAALARGDRVELRGFGAFSVKSRPART 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 GRNP+TGE + + + V F+ G++L+ R+ NA D+ Sbjct: 61 GRNPRTGEPVHVDEKSVPFFKTGKELRERLNNADIADD 98 >UniRef50_C8WVU7 Histone family protein DNA-binding protein n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVU7_ALIAD Length = 90 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 45/90 (50%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + ++GL K +++ F E L+ GE+V L G F ++ R Sbjct: 1 MNKGELVAEVQARVGLPKSQVLQVLNTFCEVTTERLQAGEEVSLPPLGKFQYVMRSARRQ 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TGE I + + V FRP LK RV Sbjct: 61 RNPQTGEMIDVPEKATVRFRPSGALKGRVN 90 >UniRef50_Q9ZF89 DNA-binding protein HU-alpha n=51 Tax=Bacteria RepID=DBHA_BURPS Length = 92 Score = 102 bits (254), Expect = 4e-21, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 49/91 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + + G SK E ++ E I++A+ G+ V+L GFG+F + R G Sbjct: 1 MNKQELIDAVAAQTGASKAQTGETLDTLLEVIKKAVSKGDSVQLIGFGSFGSGKRAARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNPKTGE I I A + V F G+ K V Sbjct: 61 RNPKTGETIKIPAAKTVKFTAGKAFKDAVNK 91 >UniRef50_Q9LA96 DNA-binding protein HU-alpha n=610 Tax=cellular organisms RepID=DBHA_AERHY Length = 90 Score = 102 bits (254), Expect = 4e-21, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 53/90 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KA++ + + K LSK AK +E I ++L+ G+ V+L GFG F + + R G Sbjct: 1 MNKAQLVDAIAAKADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVNHRAGRTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TG++I I A V +F G+ LK V+ Sbjct: 61 RNPQTGKEIQIAAANVPSFVAGKALKDAVK 90 >UniRef50_B1A4K2 Integration host factor subunit A-like protein n=2 Tax=Gammaproteobacteria RepID=B1A4K2_9GAMM Length = 112 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 49/92 (53%), Positives = 64/92 (69%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M +T+ +++ YL D LG + +A+ +V+ FF++IR+ L GE+VKLSGFGNF LRDK R Sbjct: 1 MTVTRKDLAYYLADTLGFTVTEARTIVDRFFDQIRQTLAQGEEVKLSGFGNFVLRDKRAR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 PGRNPKT + ITARRVVTF Q LK Sbjct: 61 PGRNPKTKVPVEITARRVVTFHASQSLKGHCN 92 >UniRef50_Q0AI99 Histone family protein DNA-binding protein n=42 Tax=Bacteria RepID=Q0AI99_NITEC Length = 90 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 48/90 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ E + ++K +A ++ I+ AL + V L GFG F + ++ R G Sbjct: 1 MNKSELIEAIARHADITKAEAGNALDGALSAIKDALSKNDSVTLVGFGTFKVGERAARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TG +I I A +V F G+ LK V Sbjct: 61 RNPRTGAEIKIKAAKVPKFTAGKALKDAVN 90 >UniRef50_Q2J6X1 Histone-like DNA-binding protein n=4 Tax=Frankia RepID=Q2J6X1_FRASC Length = 94 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 57/94 (60%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+++ + + ++ + +A + V+ F+ I+ A+ +GE+V ++GFG F+ ++ R G Sbjct: 1 MNKSQLVDRIAQQIEGGRSNATKAVDAVFDAIQEAVASGEKVTITGFGVFERVERAARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASP 96 RNP TGE + + A V FRPG + KS V ++ Sbjct: 61 RNPATGEPVHVAASVVPKFRPGSEFKSSVSASND 94 >UniRef50_A1AW42 Histone family protein DNA-binding protein n=4 Tax=Bacteria RepID=A1AW42_RUTMC Length = 91 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 52/91 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + + LSK DA + + I A+ + + V+L+GFG+F +R++ R G Sbjct: 1 MNKSELIDAIALAANLSKVDASRALNATTDAITGAMASSDGVQLTGFGSFVVRNRAARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TG I I A +V F+ G+ LK V Sbjct: 61 RNPQTGATIQIKASKVAAFKAGKALKEAVNK 91 >UniRef50_Q2SY23 Integration host factor subunit beta n=94 Tax=Proteobacteria RepID=IHFB_BURTA Length = 107 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 1/92 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ L + L +DA V+ + + AL G ++++ GFG+F L + R Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNPK+GE + + + V F+PG++L+ RV+ Sbjct: 61 GRNPKSGEKVQVPEKHVPHFKPGKELRERVDG 92 >UniRef50_B2IE05 Histone family protein DNA-binding protein n=2 Tax=Alphaproteobacteria RepID=B2IE05_BEII9 Length = 171 Score = 101 bits (252), Expect = 9e-21, Method: Composition-based stats. Identities = 37/93 (39%), Positives = 58/93 (62%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 + +T+ +++ ++D +G+S++DA LV EI AL GE V+L+ FGNF++R K QR Sbjct: 70 ITVTRKDLASSVYDCIGISRKDADRLVTEVLSEITEALVRGENVRLASFGNFEIRAKTQR 129 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNP+TG I RRV+ F+ + L R+ Sbjct: 130 IGRNPRTGVAAVIPPRRVLKFKASKVLLDRLNG 162 >UniRef50_C0RGK7 Integration host factor subunit beta n=44 Tax=Alphaproteobacteria RepID=IHFB_BRUMB Length = 94 Score = 101 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 56/93 (60%), Gaps = 1/93 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K+E+ + + + L +RD +V F+EI AL G +V+L GFG F ++++ R Sbjct: 1 MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 GRNP+TGE + + + V F+ G+KL+ R+ A Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRLNGA 93 >UniRef50_Q3A4K6 BHL, histone-like protein n=10 Tax=Deltaproteobacteria RepID=Q3A4K6_PELCD Length = 92 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 58/92 (63%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + L +K GL+ + A+E+V + + + L G ++++ GFG+ ++D G Sbjct: 1 MNKSELIDALAEKKGLTYKRAEEIVNIVLDTMSDTLVEGGRIEIRGFGSLVVKDYKAYIG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNPKTGE+I + +++ F+ G++L+ R+ + Sbjct: 61 RNPKTGEEIEVKPKKLPFFKVGKELRERINKS 92 >UniRef50_P43722 DNA-binding protein HU n=26 Tax=Bacteria RepID=DBH_HAEIN Length = 90 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 53/90 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ + + + L+K+ AK +E + I +L+ GE V+L GFG F + ++ R G Sbjct: 1 MNKTDLIDAIANAAELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TG +I I A +V F G+ LK ++ Sbjct: 61 RNPQTGAEIQIAASKVPAFVSGKALKDAIK 90 >UniRef50_A7H8A7 Histone family protein DNA-binding protein n=6 Tax=Cystobacterineae RepID=A7H8A7_ANADF Length = 126 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 56/92 (60%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+++ L K G++++ A+ +E F+ ++ AL GE +++ G G F ++ + G Sbjct: 1 MLKSDLINILVVKRGVTQKQAESTIETIFDSMKDALCRGENIEIRGLGAFHVKHYDGYQG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNPKTGE IP+ +R + FR G++L+ RV Sbjct: 61 RNPKTGEVIPVKPKRGILFRTGKELRDRVNRP 92 >UniRef50_A4G858 Integration host factor subunit beta n=15 Tax=Proteobacteria RepID=IHFB_HERAR Length = 101 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ L ++ L +DA V+ + + AL G+++++ GFG+F L + R Sbjct: 1 MTKSELIARLAERYPQLVAKDADYAVKTILDAMSDALATGQRIEIRGFGSFALNSRPPRI 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNPK+G+ + + +RV F+PG++L+ RV Sbjct: 61 GRNPKSGDKVMVPEKRVPHFKPGKQLRERV 90 >UniRef50_D1A9C1 Histone family protein DNA-binding protein n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A9C1_THECD Length = 159 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 44/91 (48%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + + E+ E + G A+ V+ FE I + GE+V ++GFG FD + R Sbjct: 1 MNRTELIEAVAALAGSDPAVARRHVDAVFETIMDRVTAGERVLVTGFGTFDKLSRPARTA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE + + FR GQ K RV Sbjct: 61 RNPRTGEPVEVPPTETPRFRAGQTFKDRVAG 91 >UniRef50_A4SLS6 Integration host factor subunit beta n=17 Tax=Gammaproteobacteria RepID=IHFB_AERS4 Length = 94 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 59/91 (64%), Gaps = 1/91 (1%) Query: 3 LTKAEMSEYLFD-KLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+++ E L ++ + +D + ++ E++ L+NG+++++ GFG+F L + R Sbjct: 1 MTKSDLIEQLAASRMHMPAKDVEAAIKEILEQMASTLQNGDRIEIRGFGSFSLHYRAPRV 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNPKTG+ + +T + V F+PG++L+ RV Sbjct: 61 GRNPKTGDKVELTGKYVPHFKPGKELRERVN 91 >UniRef50_P0A3I2 Integration host factor subunit beta n=3 Tax=Agrobacterium tumefaciens RepID=IHFB_AGRT9 Length = 102 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 1/97 (1%) Query: 3 LTKAEMSEYLFDKLG-LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K+E+ +++ K L +RDA+ V+ +EI ALE GE+V + FG F +R + R Sbjct: 1 MIKSELVDFVAAKNPYLHRRDAENAVDAVLDEITGALERGERVDIRSFGTFVVRHRPARS 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKD 98 GRNP G + I + V FR G++++ R+ A Sbjct: 61 GRNPLNGNAVFIEEKWVPFFRAGKEIRDRLNTAEKSQ 97 >UniRef50_P68573 SPBc2 prophage-derived DNA-binding protein HU 2 n=3 Tax=root RepID=DBH2_BACSU Length = 92 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 36/90 (40%), Positives = 58/90 (64%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + +K G+SK++ VE F+ I AL++GE+V + GFG F++R++ R G Sbjct: 1 MNKTELIAKVAEKQGVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TGE+I I A + F+P + LK V+ Sbjct: 61 RNPQTGEEIDIPATKAPAFKPAKALKDAVK 90 >UniRef50_A5CCR4 Histone-like DNA-binding protein HU n=2 Tax=Orientia tsutsugamushi RepID=A5CCR4_ORITB Length = 125 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 2 ALTKAEMSEYLFDK-LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 AL KAE ++ ++K D + + L + +A+ENG + + GFG+F +R + R Sbjct: 33 ALNKAEFVNFIHKNNTNMTKADIERALNLILRGVEKAIENGHDINIVGFGSFCVRFRAAR 92 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 G NPKTG I I V F+PG+ LK N Sbjct: 93 DGHNPKTGAKIIIPESYQVVFKPGKTLKDACNN 125 >UniRef50_C5B6T6 Integration host factor (IHF) like DNA-binding protein n=8 Tax=Rhizobiales RepID=C5B6T6_METEA Length = 163 Score = 99.5 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 1/95 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + ++E+ L + L ++D + +V I AL G++V++ GFG F +D R Sbjct: 59 MIRSELVTRLAAQNPHLYEKDCEAVVSAVLARIEDALVAGDRVEIRGFGAFSTKDIRARQ 118 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASP 96 GRNP+TGE + + ++ V FRPG+ ++ R++ +P Sbjct: 119 GRNPRTGESVLVAEKKAVQFRPGKGMRQRLKAMTP 153 >UniRef50_A3VQA5 Integration host factor subunit beta n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VQA5_9PROT Length = 113 Score = 99.5 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 57/95 (60%), Gaps = 1/95 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K+E+ + L + L +D ++LV F+ I ALE G++V+L GFG F ++ + R Sbjct: 1 MIKSELVQQLAAENPHLFMKDVEKLVSAIFDHISTALEQGDRVELRGFGTFSVKYREART 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASP 96 GRNP+TGE + + + V F+ G++++ R+ + Sbjct: 61 GRNPRTGESVEVEEKWVPFFKAGKEMRERLNKKTD 95 >UniRef50_Q0AIZ2 Integration host factor subunit beta n=53 Tax=Proteobacteria RepID=IHFB_NITEC Length = 105 Score = 99.5 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 62/97 (63%), Gaps = 1/97 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ L ++ L +DA+ +V++ + + ++L GE++++ GFG+FDL + R Sbjct: 1 MTKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLARGERIEIRGFGSFDLNYRPSRV 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKD 98 GRNPK+GE + + + V F+ G+K++ ++++ + Sbjct: 61 GRNPKSGEKVHVPEKYVPHFKAGKKMRELIDSSHKQH 97 >UniRef50_D1RMX6 DNA-binding protein HU-beta n=1 Tax=Legionella longbeachae D-4968 RepID=D1RMX6_LEGLO Length = 92 Score = 99.1 bits (246), Expect = 3e-20, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 48/91 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + GLSK D++ + + L G+ + L GF + +++ R G Sbjct: 1 MNKKELIAAISNTSGLSKTDSETALNAVISCLTELLAKGDSIVLPGFASLSVKEHPARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP TG+ I I A +VV+F+ G KLK + Sbjct: 61 RNPSTGQPIEIAASKVVSFKTGTKLKEAING 91 >UniRef50_A1VFK7 Histone family protein DNA-binding protein n=3 Tax=Desulfovibrio vulgaris RepID=A1VFK7_DESVV Length = 91 Score = 99.1 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 3 LTKAEMSEYLFDKLGL-SKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TKAE+ E + K GL +K A+ ++ + A+ GE V +GFG+F + D+ R Sbjct: 1 MTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAARK 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNP+TGE+I I A +VV F PG+ LK V+ Sbjct: 61 GRNPRTGEEIVIPAGKVVKFTPGKLLKDAVK 91 >UniRef50_B8H6A5 Integration host factor subunit beta n=10 Tax=cellular organisms RepID=IHFB_CAUCN Length = 96 Score = 99.1 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 58/96 (60%), Gaps = 1/96 (1%) Query: 3 LTKAEMSEYLF-DKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K+E+ L + L+++D + +V + E + ALE+G +V+L GFG +R + R Sbjct: 1 MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPART 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97 GRNP+TGE + + A+ V F+ G++L++R+ + Sbjct: 61 GRNPRTGEAVDVRAKHVPFFKSGKELRARLNADGDE 96 >UniRef50_B6IUP4 Integration host factor subunit beta n=22 Tax=Proteobacteria RepID=IHFB_RHOCS Length = 93 Score = 98.7 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 59/92 (64%), Gaps = 1/92 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ L ++ L +RD +++V F+EI AL G++V+L GFG F ++ ++ R Sbjct: 1 MTKSELILRLAERNPHLYQRDVEKIVTTIFDEITDALARGDRVELRGFGAFSVKKRDARL 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNP+TGE + + + + F+ G++L+ R+ Sbjct: 61 GRNPRTGETVDVNQKFIPFFKTGKQLRERLNT 92 >UniRef50_A1VR71 Integration host factor subunit alpha n=44 Tax=Burkholderiales RepID=IHFA_POLNA Length = 123 Score = 98.7 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 51/93 (54%), Positives = 71/93 (76%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 ALTKA ++E LF+++GL+KR++KE+++ FFE I L G+ VK+SGFGNF +R K RP Sbjct: 12 ALTKAHLAELLFEQIGLNKRESKEMIDAFFELISDRLVEGKDVKISGFGNFQIRTKAPRP 71 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 GRNP+TGE IPI +RRVVTF KLK +++ + Sbjct: 72 GRNPRTGEAIPIESRRVVTFHASHKLKEQIQGS 104 >UniRef50_C4K6F1 HU, DNA-binding transcriptional regulator, alpha subunit-3 n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K6F1_HAMD5 Length = 114 Score = 98.3 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 53/92 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KA++ + + + G++K A ++ + + I +L+ E V+L GFG F+++ ++ R Sbjct: 1 MNKAQLIDEIAENAGITKIKANTVLNIILDRITESLKKHESVQLVGFGTFNVKHRDARNA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNP+TGE I + A V + + LK ++ + Sbjct: 61 RNPQTGEPIELPACYVPSLNFAKALKDALKGS 92 >UniRef50_A0L640 HU family DNA-binding protein n=19 Tax=root RepID=A0L640_MAGSM Length = 91 Score = 97.9 bits (243), Expect = 1e-19, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 50/91 (54%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + E+ + + DK G+S+ DA V E I +L V L GFG F + ++ R G Sbjct: 1 MNLGELKKIVADKTGMSQADAGRAVAATLEAISESLGQSATVSLLGFGTFSVGERAAREG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE I I+A R + F+ GQ L+ +V Sbjct: 61 RNPQTGEKINISASRTIRFKAGQSLREKVNG 91 >UniRef50_P05385 DNA-binding protein HU n=38 Tax=Bacteria RepID=DBH_CLOPA Length = 91 Score = 97.5 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 36/91 (39%), Positives = 56/91 (61%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ + +K L+K+DA+ ++ E + ALE GE+V+L GFG F+ R++ R G Sbjct: 1 MNKAELITSMAEKSKLTKKDAELALKALIESVEEALEKGEKVQLVGFGTFETRERAAREG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+T E I I A V F+ G++ K +V Sbjct: 61 RNPRTKEVINIPATTVPVFKAGKEFKDKVNK 91 >UniRef50_A6TJN4 Histone family protein DNA-binding protein n=11 Tax=Clostridiales RepID=A6TJN4_ALKMQ Length = 92 Score = 97.5 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KA++ + +K L+K+DA+ + F E + AL +G++V+L GFG F++R++ R G Sbjct: 1 MNKADLVAKMAEKSELTKKDAELALNSFMESVEEALVDGDKVQLVGFGTFEVRERKPRQG 60 Query: 63 RNPKTGE-DIPITARRVVTFRPGQKLKSRVE 92 RNP+ E I I A + F+ G+ LK ++ Sbjct: 61 RNPRNPEQVIEIPASKAPVFKAGKTLKEKIN 91 >UniRef50_B8FAQ7 Histone family protein DNA-binding protein n=6 Tax=Deltaproteobacteria RepID=B8FAQ7_DESAA Length = 97 Score = 97.5 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 44/96 (45%), Positives = 63/96 (65%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 MALTKA++ E + ++LGL + +VE E I+ +LENG+ V +SGFG F +RDK+QR Sbjct: 1 MALTKAQIVEEIHNQLGLPAKQCATMVEDLLEIIKSSLENGDDVLISGFGKFRVRDKSQR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASP 96 GRNP TG+ I + AR+VVTF L+ R+ + Sbjct: 61 RGRNPATGDSIILDARKVVTFTCSGVLRDRINSNEK 96 >UniRef50_Q5LQJ4 Integration host factor subunit alpha n=14 Tax=Alphaproteobacteria RepID=IHFA_SILPO Length = 100 Score = 97.2 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 47/96 (48%), Positives = 66/96 (68%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LT+ ++SE +F ++GLS+ ++ +LVE + AL GEQVK+S FG F +RDK+ R Sbjct: 5 TLTRMDLSEAVFREVGLSRNESAQLVESMLNHMSDALVRGEQVKISSFGTFSVRDKSARV 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97 GRNPKTGE++PI RRV+TFRP +K RV + K Sbjct: 65 GRNPKTGEEVPIQPRRVLTFRPSHLMKERVAAGNRK 100 >UniRef50_Q7WX14 Putative histone-like protein n=2 Tax=Proteobacteria RepID=Q7WX14_RALEH Length = 114 Score = 97.2 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 1/92 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TKAE+ E + + GL+K A+E + + I A+ G+ + L GFG F ++ +R Sbjct: 22 MTKAELIEAIAAGVDGLTKAKAEEALNVTLHAIMDAVAKGDALSLVGFGTFSKGERAERM 81 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE+I + A R V F+ GQ+ + V Sbjct: 82 ARNPRTGEEIKVEAARTVKFKAGQRFREAVNQ 113 >UniRef50_Q3J6Y8 Histone-like DNA-binding protein n=2 Tax=Nitrosococcus oceani RepID=Q3J6Y8_NITOC Length = 94 Score = 96.8 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 50/94 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ ++ K LS+ A+ V F+ I L +V L GFG+F ++ + R G Sbjct: 1 MNKTELVNFVVLKANLSQATAQRAVNALFQTITGVLSEEGRVNLVGFGSFSVQKRAARSG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASP 96 R+P++GE I I A+ TF+P + LK V+ Sbjct: 61 RHPQSGEVIIIQAKSAPTFKPSKALKEIVQQRKQ 94 >UniRef50_A4WS11 Histone family protein DNA-binding protein n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4WS11_RHOS5 Length = 90 Score = 96.8 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 52/87 (59%), Gaps = 1/87 (1%) Query: 1 MA-LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQ 59 M L K+++ + +K+G+S+ + +++ ++I A+ G+ + L+GFG+F R + Sbjct: 1 MTRLNKSDLVSTVAEKVGVSRLAVQTVLDEAVDQIANAVRCGDSITLTGFGSFKPRHRPA 60 Query: 60 RPGRNPKTGEDIPITARRVVTFRPGQK 86 R GRNP+TGE + I A + F P ++ Sbjct: 61 RTGRNPRTGEAVAIPASTSIGFTPSRR 87 >UniRef50_C1A906 DNA-binding protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A906_GEMAT Length = 110 Score = 96.8 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 57/97 (58%), Gaps = 6/97 (6%) Query: 3 LTKAEMSE----YLFDKLG--LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRD 56 +TKA++ E + G +SK+D +V+ F + I+ AL+ + +++ GFG F +R Sbjct: 1 MTKADLVENVTARIAQTAGPTISKKDCARVVDAFLDAIKEALQEQKNIEVRGFGTFKIRQ 60 Query: 57 KNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 + R RNP+TG + ++AR V F+P ++L++ V Sbjct: 61 RKTRMARNPRTGSPVEVSARPVPVFKPSKELRAMVAG 97 >UniRef50_P0A3H3 DNA-binding protein HRL18 n=59 Tax=cellular organisms RepID=DBH1_RHILE Length = 91 Score = 96.8 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 34/91 (37%), Positives = 53/91 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + +K GL+K DA V+ FE ++ L+NG ++L+GFG+F + + G Sbjct: 1 MNKNELVSAVAEKAGLTKADAASAVDAVFETVQSELKNGGDIRLAGFGSFSVSRREASKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP TG ++ I AR V F G+ LK V + Sbjct: 61 RNPSTGAEVDIPARNVPKFSAGKGLKDAVNS 91 >UniRef50_A8LLT5 Integration host factor subunit alpha n=28 Tax=Alphaproteobacteria RepID=IHFA_DINSH Length = 101 Score = 96.8 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 45/97 (46%), Positives = 65/97 (67%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LT+ ++S+ +F ++GLS+ ++ +LVE + AL GE VK+S FG F +RDK+ R Sbjct: 5 TLTRMDLSDAVFREVGLSRNESAQLVESILTHMSDALVRGESVKISSFGTFSVRDKSARI 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKD 98 GRNPKTGE++PI RRV+TFRP +K RV N + Sbjct: 65 GRNPKTGEEVPIHPRRVLTFRPSHLMKERVANGNRNR 101 >UniRef50_A9AXB4 Histone family protein DNA-binding protein n=3 Tax=Chloroflexi (class) RepID=A9AXB4_HERA2 Length = 95 Score = 96.4 bits (239), Expect = 2e-19, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 53/95 (55%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E + ++ G+SK++A+ +V+ + + L+ GE+V L+GFG F++R++ R G Sbjct: 1 MQKIEFIAEVAERTGISKKEARRVVDAMLDVVSERLQAGEKVVLTGFGTFEVRERQARQG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97 NPKT E + I A + F LK V P+ Sbjct: 61 VNPKTRERMTIEATKTPGFSASNSLKLLVRQGKPE 95 >UniRef50_C3KW90 DNA-binding protein HU n=13 Tax=Bacteria RepID=C3KW90_CLOB6 Length = 93 Score = 96.4 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 36/93 (38%), Positives = 59/93 (63%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + +K L+K+DA+ ++ F E + ALE GE+V+L GFG F+ R++ +R G Sbjct: 1 MNKSELITSMAEKSKLTKKDAETALKAFIESVEEALEGGEKVQLVGFGTFETRERAERVG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 RNP+T E+I I A F+ G++LK +V Sbjct: 61 RNPRTKEEITIPASIAPVFKAGKELKEKVNKNK 93 >UniRef50_Q6ANC3 Related to integration host factor, alpha subunit n=2 Tax=Deltaproteobacteria RepID=Q6ANC3_DESPS Length = 103 Score = 96.4 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 42/91 (46%), Positives = 60/91 (65%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 LT+ E++E L +LG S+ E+V+ F +++ AL GE +KL FG F +RDK R G Sbjct: 13 LTRKEIAEELTGQLGYSQNICSEIVDSFLGKMKDALIEGESIKLVHFGTFTVRDKAPRTG 72 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE I IT R+ V+FRP +KL+ +V Sbjct: 73 RNPRTGEPITITKRQAVSFRPSKKLREQVNE 103 >UniRef50_C1D9R2 HupB2 n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9R2_LARHH Length = 90 Score = 96.0 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 33/89 (37%), Positives = 51/89 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK E+ + L ++ + K + +V+ + IR L G ++ L+ G F LR++ R G Sbjct: 1 MTKQELIQRLAERANVGKVETLLVVDALEQLIREELAAGGEIPLARTGKFRLREQAARMG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNPKTGE + I ARR + F P + LK V Sbjct: 61 RNPKTGESVMIPARRKIVFTPAKALKDAV 89 >UniRef50_Q12ND8 Integration host factor subunit beta n=185 Tax=Gammaproteobacteria RepID=IHFB_SHEDO Length = 95 Score = 96.0 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYLF-DKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ E L + LS ++ + ++ E++ LE G+++++ GFG+F L + R Sbjct: 1 MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMATTLEGGDRIEIRGFGSFSLHYRAPRT 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNPKTG + + + V F+PG++L+ RV Sbjct: 61 GRNPKTGTSVELDGKYVPHFKPGKELRERV 90 >UniRef50_A7V341 Putative uncharacterized protein n=4 Tax=Bacteroides RepID=A7V341_BACUN Length = 404 Score = 95.6 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 46/97 (47%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 L ++ + L ++ G+SK++A V+ FF+ I +LE + VK+ G G F L D R Sbjct: 5 LNIQDLIDTLAERHGMSKKNADSFVKEFFQLIEESLEKDKYVKIRGLGTFKLIDVGSRES 64 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 N TGE I V+F P LK + E Sbjct: 65 VNVNTGERFEIQGHTKVSFTPEPALKDIINRPFSHFE 101 >UniRef50_Q5P3H7 DNA-binding protein hu-alpha n=3 Tax=Bacteria RepID=Q5P3H7_AZOSE Length = 92 Score = 95.6 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 51/91 (56%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E E L D+L +S+ A + + I + GE+V +GFG+F++ ++ +R G Sbjct: 1 MNKGEFVEALADRLDVSRAQADRALSTVLDIIVERMAAGEKVAFTGFGSFEVSERAERTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TG I I A RV F G LK+ + + Sbjct: 61 RNPQTGASIKIAASRVPKFSAGATLKTAINS 91 >UniRef50_A7AXT3 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7AXT3_RUMGN Length = 92 Score = 95.6 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 61/91 (67%), Gaps = 1/91 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T++++ + + +K+ G+++ AKE+V + + I AL G++V+ GFG+F++R++ R Sbjct: 1 MTRSDLIKTIAEKVDGVTQEKAKEIVAVTLDSIADALTAGDKVQFVGFGSFEVRERAGRT 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNP+ G +I I + V F+ G++LK +V Sbjct: 61 GRNPQDGSEIYIEPSKNVKFKAGKELKDKVN 91 >UniRef50_B7JAF9 Integration host factor, alpha subunit, putative n=2 Tax=Acidithiobacillus ferrooxidans RepID=B7JAF9_ACIF2 Length = 107 Score = 95.6 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 40/99 (40%), Positives = 61/99 (61%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M +TK +++ +L++ G + A++ V+ FFE +R A+ ++KLSGFG F +R K+ R Sbjct: 1 MTITKKDVANHLWEVGGWTHPQAEQFVDAFFEHMRAAIITESELKLSGFGRFTVRAKSSR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 PGRNPKTG+ I ARRVVTF L+++ P Sbjct: 61 PGRNPKTGQPYEIKARRVVTFSASALLRAKSNQIFPYSR 99 >UniRef50_Q6AJG8 Probable integration host factor, alpha-subunit n=1 Tax=Desulfotalea psychrophila RepID=Q6AJG8_DESPS Length = 94 Score = 95.2 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 41/93 (44%), Positives = 63/93 (67%), Gaps = 1/93 (1%) Query: 1 MALTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQ 59 M LTKA++ + ++ K GL+K A E VE F + AL +G + LSGFG F+++DK+ Sbjct: 1 MTLTKADLIQQVYKKHEGLTKAQATESVEAFLRISKDALISGSDLLLSGFGKFNVKDKSS 60 Query: 60 RPGRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 R GRNP+TG+++ + ARRVVTF+P L+ ++ Sbjct: 61 RRGRNPQTGDELTLEARRVVTFKPSGILRDKIN 93 >UniRef50_A1WDL1 Histone family protein DNA-binding protein n=12 Tax=Proteobacteria RepID=A1WDL1_ACISJ Length = 91 Score = 95.2 bits (236), Expect = 5e-19, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 42/91 (46%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + + ++ + + + SK ++ ++ + G VKL+GFG F+ R G Sbjct: 1 MNRQDLIDAIAEDTEASKAATTRFLDSLITIVQNEVAKGGAVKLTGFGTFEKAAVAARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNPKTG I I + F PG K V++ Sbjct: 61 RNPKTGAPIKIPSTHKPKFTPGATFKDLVKD 91 >UniRef50_D2QWH5 Histone family protein DNA-binding protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2QWH5_9PLAN Length = 180 Score = 95.2 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 59/92 (64%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK E+ + + +++GL++ KE+V+ F+ I L +++L FG F+++++ R Sbjct: 56 VVTKKEIVKTISEEIGLTQLKTKEIVQKTFDAIVETLVEERRIELRNFGVFEVKERAARK 115 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TG+ + + + VVTF+PG++++ +V Sbjct: 116 ARNPRTGQPVYVAEKFVVTFKPGKEMEEKVRQ 147 >UniRef50_B8GX11 DNA-binding protein HU n=6 Tax=Caulobacteraceae RepID=DBH_CAUCN Length = 92 Score = 95.2 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M TKAE+ + +K G++K AK+ +E F E + +L++G+ V+L GFG F + Sbjct: 1 MT-TKAELVTAIAEKAGINKNQAKDALEAFIEAVTDSLKSGQDVRLVGFGTFKAVTRAAG 59 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE + A + F+ G+ LKS + + Sbjct: 60 TARNPRTGETVNRPASKTARFQVGEGLKSSLNS 92 >UniRef50_B7B856 Putative uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7B856_9PORP Length = 101 Score = 95.2 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 45/97 (46%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K + E + D+L + ++ + I +L E+V + FG+F L + RP Sbjct: 1 MNKHSLVEIISDRLNMPHDLVCSVINTLADVIADSLLEEERVVIQNFGSFRLWHQASRPV 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 RNPKTGE + R V F PG+ L + + E Sbjct: 61 RNPKTGEPMIFQPRNSVKFVPGKHLVDLLNRQADDME 97 >UniRef50_A6LB49 DNA-binding protein HU-beta n=5 Tax=Bacteroidales RepID=A6LB49_PARD8 Length = 94 Score = 95.2 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 35/90 (38%), Positives = 53/90 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ E L DK GL K++AK++++ + E + + E++ L GFG R + QR Sbjct: 1 MNKAELIEALADKTGLQKQEAKKVLDAYIEIVTERMSENEEIVLVGFGTLIPRPQTQRLA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNPKTG + I AR V F+PG+ L + Sbjct: 61 RNPKTGTPVMIPARTTVKFKPGKFLLEAMN 90 >UniRef50_A4A2Z0 Probable DNA-binding protein HU n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A2Z0_9PLAN Length = 159 Score = 94.8 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 58/92 (63%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK E+ + + +++GL++ KE+V+ F I L +++L FG F+++ + R Sbjct: 19 VVTKKEIVKTISEEIGLTQLKTKEIVQKTFNAIVDTLVEDGRIELRNFGVFEVKKRAARK 78 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE + + ++ VVTF+PG++++ RV Sbjct: 79 ARNPRTGEKVYVPSKFVVTFKPGKEMEERVRQ 110 >UniRef50_B0KQB3 Histone family protein DNA-binding protein n=14 Tax=Gammaproteobacteria RepID=B0KQB3_PSEPG Length = 101 Score = 94.8 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E++ + +K L+K A +++ + I AL+ V L GFG F+ R + R G Sbjct: 1 MRKPELAAVIAEKADLTKEKANQVLNAILDSITGALDKD-TVTLVGFGTFEKRHRGARTG 59 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 +NP+TGE + I A V F+PG+ LK V Sbjct: 60 KNPQTGEPVKIKASNTVAFKPGKNLKDSVN 89 >UniRef50_B4S407 Histone family protein DNA-binding protein n=14 Tax=Chlorobiaceae RepID=B4S407_PROA2 Length = 103 Score = 94.8 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 61/98 (62%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 TKA++ + GL+K + + +V+ FE I +L+ G+++++ GFG+F++R KN+R Sbjct: 4 TTTKADLVNTISHTTGLTKHETEAVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKNERL 63 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 RNP+TGE + + A+ V TF+ ++ K V + ++ Sbjct: 64 ARNPRTGEKVSVEAKNVPTFKISKEFKHAVSQSLQTND 101 >UniRef50_Q121G1 Histone-like DNA-binding protein n=12 Tax=Bacteria RepID=Q121G1_POLSJ Length = 103 Score = 94.8 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 51/89 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + +AE+ + + + LSK ++E+ E I++A++ G+ V+L GFG F + R G Sbjct: 1 MNRAELIDTIAAETDLSKAATGRVLEVLLETIQKAVKKGDGVQLVGFGTFKSTKRAARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 +NP+TGE + I A V F G K K+ V Sbjct: 61 KNPRTGEAVKIPATTVPKFVAGAKFKAVV 89 >UniRef50_B1Y4B9 Histone family protein DNA-binding protein n=6 Tax=cellular organisms RepID=B1Y4B9_LEPCP Length = 131 Score = 94.8 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 46/89 (51%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ E L + LSK +A ++ + + ++ G V L GFG+F + R G Sbjct: 1 MNKAELIEVLAKQHTLSKAEAARILATVLDTVVATVKKGGAVTLPGFGSFKQHARAARNG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 NP TG+ I I A ++ F PG K+ V Sbjct: 61 VNPGTGDKIKIAAVKLPKFTPGTAFKAAV 89 >UniRef50_C9RMP4 Histone family protein DNA-binding protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMP4_FIBSS Length = 124 Score = 94.8 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 48/91 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK + + + G + D K +VE F + + L G +++ GFG F + + RP Sbjct: 4 ITKQSLIQEIAKSTGFVRNDIKIVVEQFLDLLGEKLIEGNTIEIRGFGTFACKPRKARPA 63 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE + I R V TF+ +K ++ + Sbjct: 64 RNPRTGETVLIDERLVPTFKFSNDIKDKINS 94 >UniRef50_C5BJS4 DNA-binding protein HU n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BJS4_TERTT Length = 93 Score = 94.8 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 52/87 (59%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ + L L++ A ++VE E++ AL GE+V+L G G+F +R +N G Sbjct: 1 MRKTDLVKQLCTLGELNRVQADDVVEAIVEQVTNALARGERVQLPGLGSFSVRHRNAHTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKS 89 NP+TGE + I A+ + F+ G++L+ Sbjct: 61 INPQTGEALRIAAKNQIFFKAGKRLRD 87 >UniRef50_Q4FQ67 Integration host factor subunit alpha n=10 Tax=Gammaproteobacteria RepID=IHFA_PSYA2 Length = 99 Score = 94.5 bits (234), Expect = 9e-19, Method: Composition-based stats. Identities = 50/92 (54%), Positives = 73/92 (79%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LTK++M E+L L L++++ + LVE FF+E+ +L +G++VKLSGFGNF+L+DKN RP Sbjct: 3 TLTKSDMIEHLMSHLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKNSRP 62 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNPKTGE + ++ARRVVTF+ GQK + +V+ Sbjct: 63 GRNPKTGEPVAVSARRVVTFKTGQKFRQQVDE 94 >UniRef50_C0QI36 IhfB n=3 Tax=Deltaproteobacteria RepID=C0QI36_DESAH Length = 91 Score = 94.5 bits (234), Expect = 9e-19, Method: Composition-based stats. Identities = 33/89 (37%), Positives = 56/89 (62%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ L + L+K +A E+VE+FF+ + AL N E+V++ G +F +++ G Sbjct: 1 MNKLELISVLKQRADLTKTEAAEIVEIFFDSLTEALANDERVEIRGLCSFFIKEYKSYTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNPKTG + I A+++ F+ G++LK RV Sbjct: 61 RNPKTGAKVTIPAKKLPFFKCGKELKERV 89 >UniRef50_Q2IWQ7 Integration host factor subunit alpha n=17 Tax=Rhizobiales RepID=IHFA_RHOP2 Length = 123 Score = 94.5 bits (234), Expect = 9e-19, Method: Composition-based stats. Identities = 43/91 (47%), Positives = 62/91 (68%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T+ ++ E ++ K+GLS+ ++ VEL +EI LE GE VKLS FG+F +R K QR Sbjct: 7 TVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVRQKGQRI 66 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNPKTG ++PI+ RRV+ F+P LK R+ Sbjct: 67 GRNPKTGTEVPISPRRVMVFKPSAILKQRIN 97 >UniRef50_UPI0001693F3B DNA-binding protein HU n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693F3B Length = 114 Score = 94.5 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 53/91 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ E + G SK++A++ V + I AL+ G++V+L GFG FD+R + R G Sbjct: 23 MNKEQLVEVVAKSSGFSKKNAEKAVTHVLDSIFEALKQGKEVQLVGFGKFDVRSREARMG 82 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RN KTGE++ + A +V F G LK + Sbjct: 83 RNRKTGEEVELPAGKVPVFTAGITLKKALNR 113 >UniRef50_Q9XB22 DNA-binding protein HU n=33 Tax=Firmicutes RepID=DBH_STRDO Length = 91 Score = 94.5 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 34/89 (38%), Positives = 54/89 (60%) Query: 4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGR 63 K ++ + + L+K+D+ V+ F I L GE+V+L GFGNF++R++ R GR Sbjct: 3 NKQDLIAKVAEATELTKKDSAAAVDTVFSSIEGFLSKGEKVQLIGFGNFEVRERAARKGR 62 Query: 64 NPKTGEDIPITARRVVTFRPGQKLKSRVE 92 NP+TG +I I A +V F+ G+ LK V+ Sbjct: 63 NPQTGAEIKIAASKVPAFKAGKALKDAVK 91 >UniRef50_B6KEZ7 DNA-binding protein HU, putative n=3 Tax=Toxoplasma gondii RepID=B6KEZ7_TOXGO Length = 235 Score = 94.5 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 31/98 (31%), Positives = 53/98 (54%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 A+T+ ++ + +L + + + ++ V F I +LE G++V LS FG+ LR + +R Sbjct: 120 AVTRKDLVASVAAELQVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGERV 179 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 RNP+TGE + + A TF + LK +V P E Sbjct: 180 ARNPRTGEQLTVPATTFPTFSFSKVLKDKVREVIPAHE 217 >UniRef50_C1ZKD3 Bacterial nucleoid DNA-binding protein n=2 Tax=Planctomycetaceae RepID=C1ZKD3_PLALI Length = 171 Score = 94.1 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 58/91 (63%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK E+ + + D++GL++ KE+V+ F+ I L +++L FG F+++ + R Sbjct: 1 MTKKEIVKAISDEIGLTQLKTKEIVQKTFDAIVETLVADGRIELRNFGVFEVKKRAARKA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TG+ + + + VVTF+PG++++ +V Sbjct: 61 RNPRTGDKVFVPEKFVVTFKPGKEMEEKVRQ 91 >UniRef50_A5EU64 Histone-like DNA-binding protein n=33 Tax=cellular organisms RepID=A5EU64_BRASB Length = 130 Score = 94.1 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 1/99 (1%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M T E++E + + L+K AK +V+ F+ I A +G + L GFG F ++D R Sbjct: 30 MT-TANEIAEKIAAENDLTKAQAKTIVDSVFKAIADAAVSGAETSLPGFGKFKVKDSPAR 88 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 GRNP TG I I A R +TF P + +K + + ++ Sbjct: 89 EGRNPSTGATIAIAASRKLTFTPAKAIKDSLNGGTIPND 127 >UniRef50_C1SGM2 Bacterial nucleoid DNA-binding protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGM2_9BACT Length = 91 Score = 94.1 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 40/91 (43%), Positives = 60/91 (65%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKA++ E + +KLGL+K+D ++V+ F E+R + VK+SGFGNF+++ + +R G Sbjct: 1 MTKADIVELIHEKLGLTKKDIAKVVDELFNEVRDQILGKNNVKISGFGNFEVKKRGRRIG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNPKTG + I R VV FRP Q K V + Sbjct: 61 RNPKTGVETVIEPRTVVVFRPSQIFKDEVND 91 >UniRef50_Q0AZ79 Bacterial nucleoid protein Hbs n=15 Tax=Bacteria RepID=Q0AZ79_SYNWW Length = 110 Score = 93.7 bits (232), Expect = 1e-18, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 60/85 (70%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + L +K ++++DA ++++ E I++AL G++V++ GFG+F++RD+ +R Sbjct: 1 MNKSELVKSLAEKAEITQKDAAKVLDALVESIQQALAGGDKVQIIGFGSFEVRDRKERKV 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKL 87 +P TG++I + A +V F+PG+ L Sbjct: 61 ISPATGKEITVPATKVPAFKPGKSL 85 >UniRef50_C6IG13 Putative uncharacterized protein n=8 Tax=Bacteroides RepID=C6IG13_9BACE Length = 487 Score = 93.7 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 48/97 (49%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 LT ++ + L K ++K+DA+ V+ FF I +ALEN + VK+ G G F L D + R Sbjct: 5 LTIQDLIDLLAAKHSMTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLVDVDSRES 64 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 N TGE I V+F P L+ + E Sbjct: 65 VNVNTGERFQIKGHTKVSFTPDTNLRDTINKPFAHFE 101 >UniRef50_Q72CZ7 DNA-binding protein HU, beta subunit n=2 Tax=Desulfovibrio vulgaris RepID=Q72CZ7_DESVH Length = 95 Score = 93.7 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 5/94 (5%) Query: 3 LTKAEMSEYLF---DKLG--LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDK 57 + + E+ + ++ G +++RD + +++F + L G V L G ++ Sbjct: 1 MNRKELVSAVQNTLERTGCKITRRDVERTLDVFGDVAAAELLEGGDVPLPVLGKLRSVER 60 Query: 58 NQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 R GRNP+TGE I I ARRVVTF+ G+ L+ + Sbjct: 61 AARAGRNPRTGESIAIPARRVVTFKAGKDLREAL 94 >UniRef50_B0UCA4 Histone family protein DNA-binding protein n=3 Tax=Methylobacterium sp. 4-46 RepID=B0UCA4_METS4 Length = 102 Score = 93.3 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 3 LTKAEMSEYLFD-KLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + +A++ + + L A LV + I AL G++++L GFG + R Sbjct: 1 MLRAQLIQRVAALNPHLPHGQADALVRAVLDRITEALMEGDRIELRGFGVLKTTAREARQ 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TGE + + A+R V FR +++ R+ Sbjct: 61 SRNPRTGEAVEVPAKRDVAFRASREMHERLN 91 >UniRef50_B2RHA9 DNA-binding protein HU n=2 Tax=Porphyromonas gingivalis RepID=B2RHA9_PORG3 Length = 88 Score = 93.3 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 32/85 (37%), Positives = 48/85 (56%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K + + +K L+K DA+ V F E + + GE++ L GFG F + ++ R G Sbjct: 1 MNKTDFIAAVAEKANLTKADAQRAVNAFAEVVTEQMNAGEKIALIGFGTFSVSERAARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKL 87 NPKT + I I AR+VV F+PG L Sbjct: 61 INPKTKKSISIPARKVVRFKPGSTL 85 >UniRef50_D1UA57 Histone family protein DNA-binding protein n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1UA57_9DELT Length = 92 Score = 93.3 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 2/92 (2%) Query: 3 LTKAEMSEYLFDK--LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 + K+E+ + +F++ G SK ++ V + I L ++V ++GFG+F+ R Sbjct: 1 MNKSELMDAVFERRTTGFSKCHVEKAVNDALDIIAEQLAKSDKVVITGFGSFEAVTTAPR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNP GE + I A + + F+PG+ LK V+ Sbjct: 61 LGRNPHNGEAVQIPAGKKIKFKPGKALKEAVK 92 >UniRef50_B0S0H5 DNA binding protein n=12 Tax=Bacteria RepID=B0S0H5_FINM2 Length = 96 Score = 93.3 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + K LSK +++ + F + + L GE+V+L GFG F+ R++ R G Sbjct: 1 MNKSELLSSIAKKSELSKVESERALNAFIKTVEETLAKGEKVQLVGFGTFESRERKAREG 60 Query: 63 RNPKTGED-IPITARRVVTFRPGQKLKSRVENASPK 97 RNP+ E+ I I A F+ G+ LK V K Sbjct: 61 RNPRNPEEKIQIPASNAPVFKAGKSLKEAVNQKKSK 96 >UniRef50_Q3IKW5 DNA-binding protein HU-alpha (HU-2), likely to play a role in DNA replication and in rpo translation n=3 Tax=Gammaproteobacteria RepID=Q3IKW5_PSEHT Length = 89 Score = 93.3 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 48/89 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KA++ + K L+K+DA+ + + I ++L G+QV+++GFG F L R G Sbjct: 1 MNKAQLVTAMAQKSELTKKDAQAALTSLQKVITKSLAEGDQVQINGFGTFALSYYPARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+TG I I F+ + LK + Sbjct: 61 RNPQTGASIEIEGANKAVFKASKALKDVL 89 >UniRef50_B0VJA9 DNA-binding protein HU (DNA-binding protein II) (TL29) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJA9_9BACT Length = 95 Score = 92.9 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 56/95 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKA++ + + + G+ ++D +V+ I+ ++ G +++ GFG F L+ + R G Sbjct: 1 MTKADLVKIISENTGIIRKDVAVVVDALLYAIKDSMAKGNHIEIRGFGTFKLKTRKPRVG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97 RNPKT + +P+ AR V TF+ ++ K+ V N K Sbjct: 61 RNPKTDQKVPVPARTVPTFKFSREFKNAVVNVKTK 95 >UniRef50_A4YW83 Integration host factor subunit alpha n=41 Tax=Alphaproteobacteria RepID=IHFA_BRASO Length = 119 Score = 92.9 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 43/92 (46%), Positives = 62/92 (67%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T+ ++ E ++ K+GLS+ ++ VEL +EI LE GE VKLS FG+F +R K QR Sbjct: 7 TVTRVDLCEAVYQKVGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVRKKGQRI 66 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNPKTG ++PI+ RRV+ F+P LK R+ Sbjct: 67 GRNPKTGTEVPISPRRVMVFKPSAILKQRING 98 >UniRef50_D2Q2Y1 Histone family protein DNA-binding protein n=14 Tax=Bacteria RepID=D2Q2Y1_9ACTO Length = 97 Score = 92.9 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 47/88 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + + E+ + K G+ + A+++++ + + A+ G++V L+G + + + R G Sbjct: 1 MNRNELVAGVAAKAGIPRNQAEKVLDALGDVVTEAVHKGDKVSLTGLLSIERVLRAPRTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSR 90 RNP+TGE + I A V G +LK+ Sbjct: 61 RNPQTGEPLSIPAGYSVRLSCGSRLKAA 88 >UniRef50_Q65SH8 Integration host factor subunit beta n=19 Tax=Proteobacteria RepID=IHFB_MANSM Length = 94 Score = 92.9 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 33/90 (36%), Positives = 58/90 (64%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYLFDKLG-LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ E L +K +S + + V+ E + +ALE+G+++++ GFG+F L + R Sbjct: 1 MTKSELIESLVEKNHSISVKSVENAVKEILEHMSQALESGDRIEIRGFGSFSLHFRQPRV 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNPKTG + + A+ V F+ G++L+ RV Sbjct: 61 GRNPKTGAQVKLDAKCVPHFKAGKELRERV 90 >UniRef50_P0A3H5 DNA-binding protein HU 1 n=43 Tax=Actinobacteria (class) RepID=DBH1_STRCO Length = 93 Score = 92.9 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENG-EQVKLSGFGNFDLRDKNQRP 61 + ++E+ L D+ ++++DA ++ F E + + G E+V + GF F+ + R Sbjct: 1 MNRSELVAALADRAEVTRKDADAVLAAFAEVVGDIVSKGDEKVTIPGFLTFERTHRAART 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE I I A V G KLK + Sbjct: 61 ARNPQTGEPIQIPAGYSVKVSAGSKLKEAAKG 92 >UniRef50_A0L9H9 Histone family protein DNA-binding protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9H9_MAGSM Length = 109 Score = 92.5 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 41/92 (44%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + + + + K LS E+V+ + + L E V L FG F ++ G Sbjct: 1 MDAKGLIQQIARKRNLSIAQVTEIVQDLLDGVEDCLSRHEPVILPEFGQFAVKKVPPWLG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 R+P+TGE + + + V F+ +L+ R+ Sbjct: 61 RHPQTGEMMKLPGKNVPFFKSDSELRKRLNGG 92 >UniRef50_D2BF20 Putative uncharacterized protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BF20_STRRD Length = 106 Score = 92.5 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 44/94 (46%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ E + GLS+R +E I+ A+ ++V + GFG+F++ K R G Sbjct: 12 MNKRELIEKAAAEAGLSRRQTAAALEAILGTIQTAVAAEDKVAIPGFGSFEIVHKPARTG 71 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASP 96 RNP+TGE + I F+P + Sbjct: 72 RNPQTGEPLEIAETWTAKFKPSPGFMGLIRQRKK 105 >UniRef50_A0L712 Histone family protein DNA-binding protein n=5 Tax=Magnetococcus sp. MC-1 RepID=A0L712_MAGSM Length = 91 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 36/89 (40%), Positives = 58/89 (65%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK+E+ + + GL+K+ A +V+L F E+ +AL GE+V+L GFG F+ R + R Sbjct: 1 MTKSELILTIAAQKGLTKQYAAMVVDLVFSELGKALAKGERVELRGFGVFEPRARKPRAA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNPKTGE + + ++ V F+PG ++ RV Sbjct: 61 RNPKTGEKVAVESKTAVHFKPGLDMRKRV 89 >UniRef50_D2LEN1 Integration host factor, alpha subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LEN1_RHOVA Length = 245 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 48/96 (50%), Positives = 68/96 (70%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LT+A+++E +F+K+GL + +A ELVEL ++I ALE GE +KLS FG+F LR K++R Sbjct: 19 TLTRADLAEAVFEKVGLPRNEAAELVELVLKQIVYALERGEPIKLSSFGSFGLRQKSERV 78 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97 GRNPKTGE +PIT RRV+ F+ +K R+ K Sbjct: 79 GRNPKTGEIVPITPRRVIVFKASNIMKDRINAGLAK 114 >UniRef50_C4K4H0 DNA-binding protein HU-alpha (HU-2) n=2 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K4H0_HAMD5 Length = 119 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 39/96 (40%), Positives = 51/96 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ E + DK GL+K + E V F I AL E V++ FG F +R + +R Sbjct: 1 MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIEALGKKEPVQIIRFGTFKVRHRKERIS 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKD 98 RNPKTGE I AR V F G+ LK V +PK Sbjct: 61 RNPKTGEKIKTPAREVAVFSAGKSLKDSVHLQAPKQ 96 >UniRef50_Q1V2L3 Non-specific DNA-binding protein HBsu n=6 Tax=root RepID=Q1V2L3_PELUB Length = 91 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 47/91 (51%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ L L LSK DA+ + I AL+ + VK++GFG + + + R G Sbjct: 1 MNKKQLIAQLSGSLNLSKADAERTFDTITNTILDALKGDDTVKIAGFGTYKVAKRKARVG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE I I A + V F P + LK Sbjct: 61 RNPRTGEQIQIGASQKVKFLPAKALKEIFNK 91 >UniRef50_Q39VS3 Histone-like DNA-binding protein n=5 Tax=Deltaproteobacteria RepID=Q39VS3_GEOMG Length = 91 Score = 92.5 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 45/91 (49%), Positives = 72/91 (79%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKA++ E +++K+G SK+++ ELVE F I+ LENGE++K++GFGNF +++K R G Sbjct: 1 MTKADIVEQIYEKVGFSKKESAELVERVFGLIKETLENGEKIKIAGFGNFVVKEKADRRG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TG++I I+ARR++TF+P Q LKS + + Sbjct: 61 RNPQTGDEIIISARRILTFKPSQVLKSSINS 91 >UniRef50_Q01W44 Histone family protein DNA-binding protein n=3 Tax=Acidobacteria RepID=Q01W44_SOLUE Length = 108 Score = 92.1 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 30/86 (34%), Positives = 56/86 (65%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 L K ++ + ++ G++K A+ VE FE +++ALE G++++L GFG F+++ + Sbjct: 19 VLIKLDIINEVVNRTGITKTKAEMAVETVFESMKKALEQGDRIELRGFGVFNVKPRKTGI 78 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKL 87 GRNP+TG ++ I + V F+PG++L Sbjct: 79 GRNPRTGAEVSIPPGKAVRFKPGKEL 104 >UniRef50_B3R809 DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA replication and in rpo translation n=34 Tax=root RepID=B3R809_CUPTR Length = 92 Score = 91.8 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 1/92 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK E+ + + + GL+K A++ + + I A+ G+ + L GFG F ++ +R Sbjct: 1 MTKTELIDAIAAGVDGLTKAKAEQALNVTLSAIMDAVAKGDTLSLIGFGTFSKGERGERM 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE+I + A + V F+ GQK K V Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVNQ 92 >UniRef50_Q89B22 DNA-binding protein HU n=16 Tax=Bacteria RepID=DBH_BUCBP Length = 92 Score = 91.8 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 53/91 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + K LSK K ++E+ I ++L++G V+L GFG F + ++ R G Sbjct: 1 MNKSELINIISKKSNLSKIQIKNILEITLTAIIQSLKDGNSVQLVGFGTFKVNNRAARIG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TG+ I I+A + F G+ K+ ++ Sbjct: 61 RNPQTGQTIHISATKTPVFISGKTFKTAIKT 91 >UniRef50_A1AWN5 Histone family protein DNA-binding protein n=3 Tax=Gammaproteobacteria RepID=A1AWN5_RUTMC Length = 101 Score = 91.8 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 50/91 (54%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ L D LSK DAK VE+ +E+ + + +G+ +++ GFG F + + R G Sbjct: 10 MKKTDLILNLSDSSDLSKIDAKIAVEVILQELTQGIVSGQGIEIRGFGGFYKKHRKPRQG 69 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 NPKT E + + V F+PG+ LK V Sbjct: 70 INPKTSERTQVGEKFVPFFKPGKLLKEIVNK 100 >UniRef50_P19436 DNA-binding protein HU n=117 Tax=root RepID=DBH_THET8 Length = 96 Score = 91.8 bits (227), Expect = 6e-18, Method: Composition-based stats. Identities = 34/92 (36%), Positives = 55/92 (59%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TKA++ + + GL K+D K +V+ ++ AL NG +V+L+GFG F++R + R Sbjct: 5 TVTKADLVDQVAQATGLKKKDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKART 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 G P T E I I A + F+PG+ LK +V+ Sbjct: 65 GVKPGTKEKIKIPATQYPAFKPGKALKDKVKK 96 >UniRef50_B8IKW1 Histone family protein DNA-binding protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IKW1_METNO Length = 90 Score = 91.8 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 44/90 (48%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ + + K G+S+ +++ F + ++L++G+ V L G G + R G Sbjct: 1 MNKPDLLKAIAAKAGVSEAIGSKVLAAFGDIATQSLKSGDDVPLPGLGKLVTVRQEARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 NP+TG+ + I AR V R L + Sbjct: 61 HNPRTGQPLQIPARLVPKLRASTTLHDALN 90 >UniRef50_O83278 DNA-binding protein HU n=2 Tax=Treponema pallidum RepID=DBH_TREPA Length = 105 Score = 91.8 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 34/90 (37%), Positives = 53/90 (58%) Query: 4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGR 63 T++ + + L D++ LS+R +V+ F + ALE GE V+L FG F+ R + G+ Sbjct: 7 TRSFVVDALCDEVDLSRRHVARVVDSFVSVVTAALERGETVELRDFGVFESRVRKASVGK 66 Query: 64 NPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 + KTGE + I + VV FRP ++LKS V Sbjct: 67 SIKTGEVVSIPSHCVVVFRPSKRLKSAVRG 96 >UniRef50_A6LHR2 DNA-binding protein HU-beta n=3 Tax=Bacteroidales RepID=A6LHR2_PARD8 Length = 95 Score = 91.4 bits (226), Expect = 7e-18, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 53/95 (55%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + + E+ + L DKL +++ +A V+ + E ALE+ + L GFG ++ +R G Sbjct: 1 MNRRELVKTLADKLSVTQAEAMRFVQAWEETTTEALESDGSLMLLGFGTLSAWEQTERIG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97 RNPK G I AR+ V F+PG+ L ++ +S K Sbjct: 61 RNPKNGVAYMIRARKSVKFKPGKLLLKQLNASSSK 95 >UniRef50_B2AK36 HU, DNA-binding transcriptional regulator, beta subunit n=2 Tax=Burkholderiaceae RepID=B2AK36_CUPTR Length = 92 Score = 91.4 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 1/91 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK+E+ + + + GL+K A++ + + I + G+ + L GFG+F ++ +R Sbjct: 1 MTKSELIDAIAAGVDGLTKAKAEQALNVTLSAIMDTVARGDALNLVGFGSFSKGERGERI 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP+TGE I + A + V FRPGQK K Sbjct: 61 ARNPRTGEKITVDAAKTVKFRPGQKFKDAAN 91 >UniRef50_B1XSK3 Histone family protein DNA-binding protein n=18 Tax=Bacteria RepID=B1XSK3_POLNS Length = 106 Score = 91.4 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 34/94 (36%), Positives = 47/94 (50%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 L KAE+ + D +SK A+ + E I +A+ G+ V+L GFG F + R G Sbjct: 13 LNKAELIAAIADDAEISKAKAEFALNSAIENIIKAVTKGDSVQLIGFGTFASSKRAARMG 72 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASP 96 RNPKTGE + I A + V F G+ K V Sbjct: 73 RNPKTGEPLKIAAAKTVKFSAGKAFKDSVNKRKK 106 >UniRef50_B3EBV2 Histone family protein DNA-binding protein n=3 Tax=Desulfuromonadales RepID=B3EBV2_GEOLS Length = 93 Score = 91.4 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 35/93 (37%), Positives = 61/93 (65%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 MALTK ++ + + ++ ++ +DA LVE I+ LE+GE +K++ FG F++++K+ R Sbjct: 1 MALTKNKLIQLVAEQQHITLKDAALLVEELITLIKATLESGESLKIAKFGLFEVKEKHAR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNP+TGE I I R+V++F+P L+ + Sbjct: 61 RGRNPQTGEAITIEPRKVISFKPSVLLRQAINQ 93 >UniRef50_C5B569 Putative integration host factor n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B569_METEA Length = 140 Score = 91.4 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 49/94 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +T AE+ L +LGL + +V + L GE VKL GFG F +RD+ R Sbjct: 45 MTLAELESVLAGRLGLGSEETSRVVRAALSLVAERLAAGEDVKLQGFGRFCVRDRPARRR 104 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASP 96 ++P+ G ++ + ARR FRP + L+ + +S Sbjct: 105 KDPRDGRELEVPARRGAVFRPSRLLREALNRSSE 138 >UniRef50_A6CAS4 Probable DNA-binding protein HU n=2 Tax=Planctomycetaceae RepID=A6CAS4_9PLAN Length = 148 Score = 91.4 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 61/95 (64%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK E+ + + +++GL++ KE+V+ F+ I L ++++L FG F+++ + R Sbjct: 1 MTKKEIVKVISEEIGLTQLKTKEIVQKTFDAIVDTLVTDKRIELRNFGVFEVKKRAARKA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97 RNP+TG+ + + + VVTF+PG++++ RV N + Sbjct: 61 RNPRTGDRVDVEEKYVVTFKPGKEMEKRVRNLEEE 95 >UniRef50_B1Y0T8 Histone family protein DNA-binding protein n=6 Tax=Bacteria RepID=B1Y0T8_LEPCP Length = 116 Score = 91.0 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 51/91 (56%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K+E+ E++ +K +SK A +E ++ L+ G+ V L GFG F + + R Sbjct: 26 TVNKSELIEHIAEKADISKAAAARALEALIGGVKSTLKKGDSVSLVGFGTFAVTKRAARS 85 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNP+TG I I + +V FRPG+ LK + Sbjct: 86 GRNPRTGAVIKIKSSKVPKFRPGKALKDSLN 116 >UniRef50_B9KZB7 DNA-binding protein HU 1 n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KZB7_THERP Length = 92 Score = 91.0 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 53/91 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+++ + + ++ + +V F+ I+ L GE+V ++GFG F + ++ +R G Sbjct: 1 MRKSDLIKVVAERTNARQSQVAPIVNAVFQTIQETLAKGEEVSIAGFGTFRVSERARRRG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+T E I I ARR +FRPG +LK V Sbjct: 61 RNPRTNEPIEIPARRSPSFRPGTQLKRAVAG 91 >UniRef50_Q5HUP6 DNA-binding protein HU n=32 Tax=Campylobacteraceae RepID=DBH_CAMJR Length = 98 Score = 91.0 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 48/97 (49%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKA+ + GL+K+DA + I L G+ + GFG F +++ R Sbjct: 1 MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAAREA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 R P TG+ I + A RV F+ G+ LK V AS K + Sbjct: 61 RVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKK 97 >UniRef50_Q7NFI0 Gll3545 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NFI0_GLOVI Length = 105 Score = 91.0 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 L + ++ + + ++ GL+++ A ++ E I AL G VKLSGFG+F +R + R Sbjct: 7 LNRQQLLQQMASRVDGLTQKTAGAALDAALEVIADALAQGRTVKLSGFGSFQVRRRPART 66 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 +P+TG+ + + A F P Q L+ R+ Sbjct: 67 NIHPRTGQPVLVPAAWNAVFSPAQALRERL 96 >UniRef50_UPI0001969776 hypothetical protein BACCELL_04916 n=1 Tax=Bacteroides cellulosilyticus DSM 14838 RepID=UPI0001969776 Length = 471 Score = 91.0 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 34/97 (35%), Positives = 45/97 (46%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 L + E L +K G+ K DA+ V+ FF+ I +LEN + VK+ G G F L D R Sbjct: 5 LNIQNLIELLAEKHGMDKADAESFVKEFFQLIEESLENDKYVKIRGLGTFKLIDVESRES 64 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 N TGE I V+F P LK + E Sbjct: 65 VNINTGERFEIQGHTKVSFAPEPALKDLINKPFSHFE 101 >UniRef50_Q0C4A3 DNA-binding protein HU n=3 Tax=Hyphomonadaceae RepID=Q0C4A3_HYPNA Length = 88 Score = 91.0 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 31/87 (35%), Positives = 50/87 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+++ + GLS+ DA + V+ FE + A ++ +QV ++GFG F + +N R G Sbjct: 1 MNKGELTKAVAAASGLSQSDAGKAVDALFETVAAAAKSRQQVAIAGFGTFSAKTRNAREG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKS 89 RNP T E I I + + F+P LK Sbjct: 61 RNPATKETIKIPEKTSLAFKPASALKD 87 >UniRef50_C3M8C0 DNA-binding protein n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C3M8C0_HAMD5 Length = 113 Score = 90.6 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 36/96 (37%), Positives = 53/96 (55%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ E + DK GL+K + E V F I +L E V++ F F + +++R Sbjct: 1 MNKTELIEQVRDKSGLTKAQSTEAVTAVFSSIIDSLGKKEPVQIIRFATFKVSHRSERMS 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKD 98 R+PKTGE I AR V F G++LK+ V SPK+ Sbjct: 61 RHPKTGEKIKTPAREVPVFSAGKRLKASVHLQSPKE 96 >UniRef50_C7XFY9 Integration host factor, alpha subunit n=2 Tax=Bacteroidales RepID=C7XFY9_9PORP Length = 98 Score = 90.6 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 49/92 (53%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 ++ + E+ + L ++ GL K + +V + + + GE + + GFG+F +++R Sbjct: 7 SMNRGELVQSLVEETGLPKNVVRAVVNALPTVVAKGIREGESISMKGFGSFVPWQQSERL 66 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNPKTGE++ IT R V F+ G L + Sbjct: 67 ARNPKTGEEVMITPRVSVKFKAGSDLLKELNE 98 >UniRef50_B5YLD8 Integration host factor alpha-subunit n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YLD8_THEYD Length = 94 Score = 90.6 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 39/91 (42%), Positives = 63/91 (69%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKA++ ++F+++GL + + ++VE FE ++ AL+ E VK+SGFG F +R K R G Sbjct: 1 MTKADLVNFIFERVGLPRTEIHKIVETVFETMKEALQEEEVVKISGFGVFTVRRKGSRIG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNPKT + + I R+VVTFRP ++LK ++ Sbjct: 61 RNPKTMQIVEIKPRKVVTFRPSEQLKQSIQK 91 >UniRef50_B6WST8 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WST8_9DELT Length = 97 Score = 90.2 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 6/91 (6%) Query: 3 LTKAEMSEYLFDKL------GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRD 56 +TK ++ + ++ L + D + +++ + + L G +V L G G +D Sbjct: 1 MTKEDLVRNVTERSRIHLGRSLCQADVEAVLQALKDVTAQELTAGGEVPLPGLGKLKTKD 60 Query: 57 KNQRPGRNPKTGEDIPITARRVVTFRPGQKL 87 + R GRNP+TGE + I ARRVV F P +KL Sbjct: 61 RAARMGRNPRTGEAVTIPARRVVVFAPSEKL 91 >UniRef50_P17615 DNA-binding protein HB1 n=19 Tax=Actinobacteridae RepID=DBH1_BIFLO Length = 93 Score = 90.2 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 47/91 (51%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 MA K+++ + K L+K A+ V F + A+++GE +KL+G + + + R Sbjct: 1 MAYNKSDLVSKIAQKSNLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAAR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNP+TGE I I A V G LK V Sbjct: 61 TGRNPRTGEQIDIPASYGVRISAGSLLKKAV 91 >UniRef50_Q30VZ6 Histone-like DNA-binding protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30VZ6_DESDG Length = 95 Score = 90.2 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 5/95 (5%) Query: 3 LTKAEMSEYLFDKLGL-----SKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDK 57 +TKAE+ + + L L + + +++ + I L G+ V+L+GFG F + + Sbjct: 1 MTKAELEMAVVEVLALNGIKATHKAVADVISATLDVITGELAGGDPVRLTGFGAFKVTRR 60 Query: 58 NQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 R GRNPKTGE + I A V F PG+ LK + Sbjct: 61 TARIGRNPKTGEPVEIPASTGVKFSPGKTLKEALN 95 >UniRef50_C8XUL7 Putative DNA-binding protein n=1 Tax=Shigella phage phiSboM-AG3 RepID=C8XUL7_9CAUD Length = 92 Score = 90.2 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 52/91 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + + E ++ ++K +A+++V F + ++ A+ G V+L GFG F+++ + R G Sbjct: 1 MNRTEFVAHIASTQNITKGEAEKVVASFIDGVKTAVAAGASVQLVGFGAFEVKHQEAREG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP G+ I I A+ VV F+ G+ LK+ Sbjct: 61 RNPLNGQTIQIEAKNVVKFKVGEGLKNAANG 91 >UniRef50_C9LHL9 Putative integration host factor IHF alpha subunit n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LHL9_9BACT Length = 423 Score = 90.2 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 4/97 (4%) Query: 3 LTKA----EMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKN 58 + + E+++ + +SK+ A+ FF+ I L + VK+ GFG F + N Sbjct: 1 MNRKLLLQEVADAFAQRANISKKKAEAFCRAFFDLIEEELTHESFVKIKGFGTFKVITVN 60 Query: 59 QRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 +R N TGE I I + ++F P +LK + Sbjct: 61 ERESININTGERIRIDSHAKLSFVPDSQLKDLINKPF 97 >UniRef50_B2S525 Integration host factor subunit alpha n=48 Tax=Alphaproteobacteria RepID=IHFA_BRUA1 Length = 107 Score = 90.2 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 45/98 (45%), Positives = 68/98 (69%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T+A+++E ++ K+GLS+ ++ LVE+ +E+ A+ NGE VKLS F F +RDKN+R Sbjct: 5 TVTRADLAEAVYRKVGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERI 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 GRNPKTGE++PI RRV+TF+ LK R+ K + Sbjct: 65 GRNPKTGEEVPILPRRVMTFKASNVLKQRILQEHQKRQ 102 >UniRef50_P29214 DNA-binding protein HU homolog n=6 Tax=cellular organisms RepID=DBH_GUITH Length = 93 Score = 89.8 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 51/93 (54%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+++ + SK D ++++ E I + GE+V L GFG+F+ R++ R G Sbjct: 1 MNKSQLISKIAYYTKYSKTDIEKIITSMLEIIVDTVATGEKVTLVGFGSFEARERKAREG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 RNP+TGE + + A R+ TF G +++V Sbjct: 61 RNPRTGEKLFLPASRIPTFSVGNFFRNKVNKTF 93 >UniRef50_C7NGK9 Bacterial nucleoid DNA-binding protein n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NGK9_KYTSD Length = 106 Score = 89.8 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 1/94 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KA+++ L +G + A + V++ + + R + G V L+GFG F+ ++ R G Sbjct: 1 MNKADLARILEPIVG-GQGVASQCVDVLVDAMIREVAAGGTVTLTGFGTFERVERAPRTG 59 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASP 96 RNP+TGE + I FRP + V + S Sbjct: 60 RNPRTGEVVRIPGTAGPRFRPSPMFRGFVADPST 93 >UniRef50_B7B7U9 Putative uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7B7U9_9PORP Length = 99 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 44/91 (48%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + + ++ + +LG+ + V+ F E + L G V + FG+F ++ RP Sbjct: 1 MNRKDIEKITAARLGVPVTTVEPFVQAFLETVSDCLMYGHHVTIQRFGSFRRWEQTSRPV 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE + R V F PG+ L ++ Sbjct: 61 RNPRTGEPCMLEPRTSVKFNPGKTLFEKMNT 91 >UniRef50_A0LI64 Histone family protein DNA-binding protein n=6 Tax=Deltaproteobacteria RepID=A0LI64_SYNFM Length = 96 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 58/92 (63%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK+E+ E L G++ + A+ V + F+ + AL +++++ GFG+F +++ G Sbjct: 1 MTKSELIETLAKAEGITLKAAETAVNVAFQSMENALIRSDRLEIRGFGSFKVKNYEGYKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNPKTGE I + ++++ F+ G++LK RV + Sbjct: 61 RNPKTGELIEVNSKKLPFFKVGKELKERVNGS 92 >UniRef50_D1CFB6 Histone family protein DNA-binding protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFB6_THET1 Length = 84 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 31/81 (38%), Positives = 50/81 (61%) Query: 5 KAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRN 64 K E+ + ++ G++K +++ E EIR +LE GE V + GFG F + +++ R GRN Sbjct: 4 KTELINQVAERTGMTKSQVQKVFEEMLSEIRSSLEKGEDVIIRGFGTFKVTERSPRKGRN 63 Query: 65 PKTGEDIPITARRVVTFRPGQ 85 P+TGE+I I + VTFR + Sbjct: 64 PRTGEEIEIPGGKRVTFRMSK 84 >UniRef50_A6Q378 DNA-binding protein HU n=4 Tax=Epsilonproteobacteria RepID=A6Q378_NITSB Length = 91 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 52/91 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE + + +K GLSK+D +++++ E I AL+NG++V GFG F + R Sbjct: 1 MKKAEFVQIVAEKAGLSKKDTQKVIDAALEVITDALKNGDEVAFIGFGTFTTAQRAAREA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 + P T + + A RVV F+ G+KLK V Sbjct: 61 KVPGTDRVVKVPATRVVKFKVGKKLKEAVAG 91 >UniRef50_UPI0001BC7A84 putative histone-like DNA-binding protein n=1 Tax=Bacteroides sp. D2 RepID=UPI0001BC7A84 Length = 88 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 30/86 (34%), Positives = 52/86 (60%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + K LS R+A +++ + I ++ GE + L GFG+F ++++ +R G Sbjct: 1 MNKTELIKEVALKGKLSFREAGYALDVIIDTITETMQKGENITLVGFGSFVIQERKERNG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLK 88 NP TG + I A+R V FRPG K++ Sbjct: 61 HNPSTGGSMVIPAKRQVKFRPGSKMR 86 >UniRef50_Q9ZHC5 DNA-binding protein HU homolog n=31 Tax=Bacteria RepID=DBH_MYCS2 Length = 208 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 34/94 (36%), Positives = 52/94 (55%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ + L K+G +R A VE + I RA+ G+ V ++GFG F+ R + R Sbjct: 1 MNKAELIDVLTTKMGTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASP 96 RNP+TGE + + V FRPG + K+ + A Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVISGAQK 94 >UniRef50_B8DRW9 Histone family protein DNA-binding protein n=11 Tax=Desulfovibrionales RepID=B8DRW9_DESVM Length = 97 Score = 89.1 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 56/92 (60%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LTKAE+ + +++K ++ + K +VE +++A++ + +SGFG F+ DK R Sbjct: 5 TLTKAEIVDAIYEKTDRNRAEVKGVVESLLGIMKQAIKKDHALLISGFGKFEAYDKKARK 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNP+T E I + R+VV FR +K ++ + + Sbjct: 65 GRNPQTDETITLPPRKVVVFRLSRKFRAELND 96 >UniRef50_Q9XB18 DNA-binding protein HU homolog n=36 Tax=Actinomycetales RepID=DBH_MYCBO Length = 214 Score = 89.1 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 36/92 (39%), Positives = 52/92 (56%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ + L KLG +R A VE + I RA+ G+ V ++GFG F+ R + R Sbjct: 1 MNKAELIDVLTQKLGSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNP+TGE + + V FRPG + K+ V A Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVVSGA 92 >UniRef50_C8X523 Histone family protein DNA-binding protein n=2 Tax=Desulfovibrionales RepID=C8X523_DESRD Length = 98 Score = 89.1 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 54/91 (59%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LTKA++ + ++++ S+ + K +VE + +R +++ + +SGFG F+ DK R Sbjct: 5 TLTKADIVDAIYEQGQRSRAEVKNIVEDMLDIMRDSIKKDYALLISGFGKFEAYDKEPRK 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNP+T E I + R VV FR ++ ++ + Sbjct: 65 GRNPQTEEAITLPGRTVVVFRLSRRFRAELN 95 >UniRef50_C9RKN2 Histone family protein DNA-binding protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKN2_FIBSS Length = 116 Score = 89.1 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 48/91 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK E+ + + + G ++ K +VE + I + G ++L GFG F + + +R Sbjct: 8 ITKKEIVDEIASQTGFTQVKTKVIVEELIDAISNCVIEGNNIELRGFGRFKNKQRKERRT 67 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNPKTGE + I A+ F P + L ++ N Sbjct: 68 RNPKTGELVNIPAKVRPVFEPSKDLIEKINN 98 >UniRef50_A6L5E9 Putative integration host factor IHF alpha subunit n=6 Tax=Bacteroides RepID=A6L5E9_BACV8 Length = 476 Score = 89.1 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 46/97 (47%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +T ++ E L +K ++K+DA+ V+ FE I AL + VK+ G G F L + R Sbjct: 5 VTIQDIIELLAEKHSMTKKDAEIFVKGMFELIEEALVTEKYVKVKGLGTFKLTEVESRES 64 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 N TGE I I ++F P +K + E Sbjct: 65 VNVNTGERIEIQGHTKISFTPDSSMKDLINKPFAHFE 101 >UniRef50_A5ZCF1 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=A5ZCF1_9BACE Length = 435 Score = 88.7 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 49/97 (50%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 LT ++++ L K ++K+DA+ V+ FF I +ALEN + VK+ G G F L D + R Sbjct: 5 LTIQDLTDLLAAKHSMTKKDAEVFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVDSRES 64 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 N TGE I V+F P L+ + E Sbjct: 65 VNVNTGERFQIKGHTKVSFSPDANLRDTINKPFAHFE 101 >UniRef50_C3JSK6 DNA-binding protein (Fragment) n=1 Tax=Rhodococcus erythropolis SK121 RepID=C3JSK6_RHOER Length = 183 Score = 88.7 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 35/94 (37%), Positives = 53/94 (56%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ + L +KLG +R A + VE + I RA+ GE V ++GFG F+ R + R Sbjct: 1 MNKAELIDVLTEKLGSDRRTATDAVEHVVDTIVRAVHRGESVTITGFGVFEQRRRAARVA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASP 96 RNP+TGE + + V FRPG + K+ + Sbjct: 61 RNPRTGETVKVKPTSVPAFRPGAQFKAVIAGGQK 94 >UniRef50_A7AIP7 Putative uncharacterized protein n=2 Tax=Parabacteroides RepID=A7AIP7_9PORP Length = 91 Score = 88.7 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 51/91 (56%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + ++++ L K GL+K+D K ++ + I + ++ G+++ L GFG+F R ++ RP Sbjct: 1 MNRSQLINILAQKTGLNKKDVKRTIDEMQKLIVQEVKEGQRICLHGFGSFKPRFQSSRPA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RN K G + ++ R ++ F+ L ++ Sbjct: 61 RNLKNGTAVQLSPRTIIHFKCAPHLLEQMNK 91 >UniRef50_B7AFK0 Putative uncharacterized protein n=1 Tax=Bacteroides eggerthii DSM 20697 RepID=B7AFK0_9BACE Length = 106 Score = 88.7 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 46/89 (51%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + GL DA + + F + + GE + SG G F +R+ RPG Sbjct: 1 MNKQELIKAVAAASGLCVVDASKEMSAFENILEDCMARGEILSWSGVGAFCVREHKARPG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP TG + I R+VV F PG+ L+ V Sbjct: 61 RNPFTGLGMRIPTRKVVKFSPGKSLREAV 89 >UniRef50_B3C8S3 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3C8S3_9BACE Length = 433 Score = 88.7 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 46/97 (47%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 L + E L +K G+ K DA+ V+ FF+ I +LE+ + VK+ G G F L D + R Sbjct: 5 LNIQNLIELLAEKHGMDKTDAESFVKEFFQLIEESLESDKYVKIKGLGTFKLIDVDSRES 64 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 N TGE I V+F P LK + E Sbjct: 65 VNINTGERFEIQGHTKVSFTPEPTLKDLINKPFSHFE 101 >UniRef50_Q1GXQ0 Histone-like DNA-binding protein n=2 Tax=Proteobacteria RepID=Q1GXQ0_METFK Length = 90 Score = 88.3 bits (218), Expect = 6e-17, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+E+ + S + +++ ++ L G +V L G G + ++ R G Sbjct: 1 MKKSELVALI-KPANTSAAVTESILDALGSVVQEQLARGGEVTLPGIGKLSVTERAARAG 59 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE IPI A++ F + LK V Sbjct: 60 RNPRTGEIIPIEAKKTPKFSAAKALKDAVNG 90 >UniRef50_Q1NPH8 Histone-like bacterial DNA-binding protein n=4 Tax=Deltaproteobacteria RepID=Q1NPH8_9DELT Length = 93 Score = 88.3 bits (218), Expect = 6e-17, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K ++ + +++ G K+D + V++ E I ALE +V++ GFG+F +R++ R Sbjct: 1 MLKRDLINAVAEEMPGFLKKDLDQAVDIMLESILEALEENRRVEIRGFGSFSVRERKART 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 +NP+TG+ + I R+ V F + LK + Sbjct: 61 TKNPRTGKVMHIPPRKNVHFTMSKSLKDGL 90 >UniRef50_UPI0001B4AA8F integration host factor, beta subunit n=1 Tax=Bacteroides fragilis 3_1_12 RepID=UPI0001B4AA8F Length = 97 Score = 88.3 bits (218), Expect = 6e-17, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 42/91 (46%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK E+ + ++ ++K D + + F+ + + NG+ + + GFG + + + Sbjct: 1 MTKQELINTIAERAEINKIDVEHAINTAFDVAKETIANGDSIFIRGFGTLSPKRRQAKVA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RN G + + V F+P + K +V Sbjct: 61 RNITAGTSVVVPETIVPHFKPCKAFKGQVNE 91 >UniRef50_C7Q397 Histone family protein DNA-binding protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q397_CATAD Length = 167 Score = 88.3 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 55/93 (59%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KA+++ + +++ ++ DA++ V+ F+ I R + GE+V++ GFG FD + R G Sbjct: 2 VNKADLAAEVAEQMSGAEPDARQYVDAVFDVIMRHVAAGERVQILGFGTFDSVQRAARLG 61 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 RNP+TG I + A F GQ ++RV AS Sbjct: 62 RNPQTGAAIQVPAGTSPRFHAGQTFRTRVAEAS 94 >UniRef50_C4XHM4 HU_IHF family transcriptional regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XHM4_DESMR Length = 92 Score = 88.3 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 55/91 (60%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + +K L A E V FFE I++AL NG++V++ GFG+F +++ + G Sbjct: 1 MNKGELIKAVGEKYNLDHEFAVEFVNSFFESIKQALVNGDRVEVRGFGSFAVKEYDGYTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNPKTG + + +++ F+ G+ K+ + Sbjct: 61 RNPKTGIKVEVKPKKIPFFKTGRDFKNYLNR 91 >UniRef50_A5CWF3 Integration host factor, alpha subunit n=2 Tax=sulfur-oxidizing symbionts RepID=A5CWF3_VESOH Length = 109 Score = 88.3 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 41/88 (46%), Positives = 61/88 (69%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M++TK +++ L + ++ A + FF++I++ L +GE VKLS FGNF +R+K+ R Sbjct: 1 MSITKKDIANVLVKSMDITHVQALSITHDFFDQIKQTLASGESVKLSSFGNFIIREKSSR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLK 88 GRNPKTGE + I+ARRVV F+ G KLK Sbjct: 61 VGRNPKTGEMVEISARRVVVFKSGPKLK 88 >UniRef50_A3EUM1 Putative histone-like DNA-binding protein n=2 Tax=Leptospirillum sp. Group II RepID=A3EUM1_9BACT Length = 102 Score = 87.9 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 1/95 (1%) Query: 2 ALTKAEMSEYLFDKLG-LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 LTK+E+ + L K G L+K+ E+V+ F I + G V + GFG F + R Sbjct: 8 TLTKSELIDTLHAKNGTLTKKAVSEVVDQVFSTITDHVAKGTAVNIVGFGKFHAVKRAAR 67 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 GRNP TG I I A F G+ K V Sbjct: 68 TGRNPATGAVIKIAATTTPRFAAGKAFKDSVARKK 102 >UniRef50_B8II37 Histone family protein DNA-binding protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8II37_METNO Length = 113 Score = 87.9 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Query: 3 LTKAEMSEYLFD-KLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + +A++ + + + L A+ +V + + AL E++ L GFG F + R Sbjct: 1 MVRAQLIQRIAELNPHLRPGVAEAVVRTILDRMGEALVQEERIALRGFGTFKTNARGAR- 59 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 G NP+TGE + + ARR V FR ++ R+ + Sbjct: 60 GHNPRTGEAVAVPARRDVRFRASTEMLHRLND 91 >UniRef50_C0GE87 Histone family protein DNA-binding protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GE87_9FIRM Length = 84 Score = 87.9 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 32/81 (39%), Positives = 47/81 (58%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K +++ + +KL + +DA+ V + I +L GE VKL+GFG FDLR +R Sbjct: 1 MIKTDVARSIAEKLNIQVKDAETTVNGLIDTITESLSAGEAVKLAGFGTFDLRHAPERAA 60 Query: 63 RNPKTGEDIPITARRVVTFRP 83 RNPKTGE + + A TFR Sbjct: 61 RNPKTGETVQVPATHYPTFRA 81 >UniRef50_C0QI67 IhfA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI67_DESAH Length = 108 Score = 87.5 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 40/98 (40%), Positives = 61/98 (62%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 MALTK E++E L +S+ + +++E F E I+ LE GE V +SGFG F + +K R Sbjct: 1 MALTKTEITERFQKALDISRNTSYDIMEDFLEIIKETLEQGEDVMISGFGKFCVNEKKAR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKD 98 GRNP T E++ + ARRV+TF+ KL++ + + K Sbjct: 61 KGRNPATSEEMILPARRVITFKCSGKLRNLINTSEQKQ 98 >UniRef50_B4UEN5 Histone family protein DNA-binding protein n=3 Tax=Anaeromyxobacter RepID=B4UEN5_ANASK Length = 90 Score = 87.5 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYL-FDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TKA++ E + LSKR LV+ FE + + + ++ + GFG F ++ + R Sbjct: 1 MTKADLIEKVQALHDDLSKRQVALLVDSVFEHLAKGIRKDKRFTMPGFGTFVVKRRAGRV 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNP+TG +I I + V F+P +LK + Sbjct: 61 GRNPQTGAEIQIAPTKTVGFKPAPELKKAL 90 >UniRef50_D1XWL2 DNA-binding protein HU n=1 Tax=Prevotella bivia JCVIHMP010 RepID=D1XWL2_9BACT Length = 443 Score = 87.5 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 42/92 (45%) Query: 8 MSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKT 67 ++ + K LS DA + VE F+ + L+N QVK+ G G F ++ R N T Sbjct: 9 LAIAIAKKYKLSNVDATKFVEAIFDIVTEELKNNGQVKIKGLGTFKVQSVKPRESVNVNT 68 Query: 68 GEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 GE + I ++F P +K V + E Sbjct: 69 GERVLIEGHDKISFTPDATMKELVNKPFSQFE 100 >UniRef50_Q5LM20 DNA-binding protein HU n=1 Tax=Ruegeria pomeroyi RepID=Q5LM20_SILPO Length = 91 Score = 87.1 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 41/91 (45%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK ++ L + +G K+ A ++ I R + G V L G G R++ +R Sbjct: 1 MTKTQLVAALAEDMGSDKKTASAALDAVCALITREVSGGGAVTLPGVGKIYCRERPERQV 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP TGE A +VV + LK V Sbjct: 61 RNPATGETFTKAADKVVKMTIAKALKDSVNG 91 >UniRef50_C6P6T8 Histone family protein DNA-binding protein n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P6T8_9PROT Length = 100 Score = 87.1 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 2 ALTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 ++ ++++ L ++ L +D + V + +++ + G +V++ GFG+F L + R Sbjct: 5 SMNRSDLISKLAEQTPNLQAKDVELGVRVILDKLATTISKGNRVEIRGFGSFGLNYRKPR 64 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSR 90 GRNPKTG I + A+ F+PG+ LK Sbjct: 65 NGRNPKTGAKIEVAAKYHPRFKPGKALKEM 94 >UniRef50_B0NU55 Putative uncharacterized protein n=1 Tax=Bacteroides stercoris ATCC 43183 RepID=B0NU55_BACSE Length = 101 Score = 86.8 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 52/91 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + ++ G++K+++++L+ + + ++ ++ L GFG F ++ K R G Sbjct: 1 MNKKELVDAIAEETGMNKKESRKLLNVIIGIVIEEMKKDGKLLLMGFGTFFVKQKPARRG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 NP T I I A+RVV FRP L S ++ Sbjct: 61 MNPSTFVPIEIPAKRVVYFRPSAYLNSLLKR 91 >UniRef50_A5CZB4 Bacterial nucleoid DNA-binding protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CZB4_PELTS Length = 89 Score = 86.8 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 48/89 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ L + G+++ AK +++ + + ++ G V+ +G G F + R Sbjct: 1 MRKYELVRLLAAETGVTQGQAKAVLDALPDVVLSLVQAGHPVRFAGLGTFQAVTRQPRKA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RN +TGE + + ARR+++FR +K + V Sbjct: 61 RNLQTGEPVMVPARRMLSFRAERKYRKGV 89 >UniRef50_C4XGD8 HU_IHF family transcriptional regulator n=2 Tax=Desulfovibrio RepID=C4XGD8_DESMR Length = 100 Score = 86.8 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 56/91 (61%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LTKA++ +Y+++K ++ + K LV+ E ++++++ + +SGFG F+ DK R Sbjct: 5 TLTKADIVDYIYEKTERNRAEVKVLVDHLLELMKQSIKRDNSLLVSGFGKFESYDKKARK 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 GRNP+T I + R+VV FR +K ++ + Sbjct: 65 GRNPQTNASIMLPPRKVVVFRLSRKFRAELN 95 >UniRef50_C9MQK2 Putative integration host factor IHF alpha subunit n=1 Tax=Prevotella veroralis F0319 RepID=C9MQK2_9BACT Length = 376 Score = 86.4 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 40/92 (43%) Query: 8 MSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKT 67 ++ L + LS D V+ FF I L+ G QVK+ G G F ++ R N T Sbjct: 9 IASALAKQYKLSAADGATFVDTFFAIISDELKKGNQVKIKGLGTFKVQRVKPRESVNVNT 68 Query: 68 GEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 GE + I V+F P +K V + E Sbjct: 69 GERVLIEGHDKVSFTPDAAMKELVNKPFSQFE 100 >UniRef50_A1S612 DNA-binding protein, HU family n=2 Tax=Shewanella RepID=A1S612_SHEAM Length = 91 Score = 86.4 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 51/91 (56%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KA +++++ + G+S+ +AK +E IR+ALE GE + L FG F+LR R Sbjct: 1 MNKATLTKFIANTTGVSQPEAKRQLEQILASIRQALEEGETLYLPQFGTFELRYHLPRQV 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNPKTGE + + +F+P LK + Sbjct: 61 RNPKTGELMEVAGFNQPSFKPAPALKQLIAG 91 >UniRef50_Q1Q201 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q201_9BACT Length = 103 Score = 86.4 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 1/97 (1%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 TK ++ E + K + K+ +++F +EI L G +++L FG F++R + R Sbjct: 3 TTTKRDLCEKIARKTDNTHMVVKKTIQMFLDEIIGELSQGNRIELRDFGVFEIRQRAARK 62 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV-ENASPK 97 RNP+TGE + ++ VV F+ G+ ++ +V + + Sbjct: 63 ARNPRTGEVAFVPSKNVVVFKVGKLMREKVGNSPQTQ 99 >UniRef50_B7CAU3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAU3_9FIRM Length = 95 Score = 86.4 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 52/91 (57%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K +++ L +L +SK+DA V+L F E+ AL + V ++ FG F++ D+ R G Sbjct: 5 VNKESLTQTLSIQLNMSKKDAAYAVDLIFNEMSDALASDGHVDITAFGKFEIFDRKSRMG 64 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 NP T E + I A ++ FRP Q LK++ Sbjct: 65 INPVTKERMMIQATKLPKFRPSQTLKNKCNK 95 >UniRef50_C9YFH2 Integration host factor subunit beta n=2 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YFH2_9BURK Length = 103 Score = 86.0 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 52/95 (54%), Gaps = 1/95 (1%) Query: 3 LTKAEMSEYLFDKLG-LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + ++++ L ++ + K+D + V L F+E+ AL G ++++ FG R + Sbjct: 1 MNRSDLINQLANRFNEIDKKDTELAVRLIFDEMANALVKGRRIEIRNFGILQARTRPSTT 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASP 96 RNP+TGE + + R + F+ G++L+SR+ + Sbjct: 61 YRNPRTGEKLKRRSTRSIRFKEGKELRSRMAGGNS 95 >UniRef50_Q4ZXI2 Histone-like bacterial DNA-binding protein n=22 Tax=cellular organisms RepID=Q4ZXI2_PSEU2 Length = 93 Score = 86.0 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 45/93 (48%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 MALTK ++ + + + K A+ +E + LE G ++ L G + ++ R Sbjct: 1 MALTKDQLIADIAEAIDAPKTTARSALEQLGHIVADQLEKGVEITLPNIGKLKVAERPAR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNP TG I I A++V+ F P + L + Sbjct: 61 TGRNPSTGAAIEIAAKKVIKFVPAKVLTDSINK 93 >UniRef50_C4K783 Integration host factor (IHF), DNA-binding protein, alpha subunit n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K783_HAMD5 Length = 107 Score = 86.0 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 55/99 (55%), Positives = 73/99 (73%), Gaps = 2/99 (2%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRAL--ENGEQVKLSGFGNFDLRDKN 58 M +TKA++ + + +K GL +++K+L+ELFFEEIR L E ++K SGFGNF+LRDK Sbjct: 1 MTITKADILDDVSEKFGLEPKESKDLLELFFEEIRCILGDEECSELKFSGFGNFNLRDKK 60 Query: 59 QRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97 RPGRNPKTGED+ I RRVVTF G KLK+ +EN + K Sbjct: 61 ARPGRNPKTGEDVLIKKRRVVTFHAGLKLKTLIENGNEK 99 >UniRef50_B3JJB8 Putative uncharacterized protein n=1 Tax=Bacteroides coprocola DSM 17136 RepID=B3JJB8_9BACE Length = 371 Score = 86.0 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 44/96 (45%) Query: 4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGR 63 T+ ++++ L + ++ DA+ V F + ++ + + VK+ G G F L + + R Sbjct: 6 TQQDLADLLAQRHEMNPADAEAFVRTLFALVEESVISDKYVKIKGLGTFKLIEVDARESI 65 Query: 64 NPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 + TGE I I ++F P ++ V E Sbjct: 66 DINTGERIEIREHSRISFTPDSTMRETVNKPFSHFE 101 >UniRef50_D1QUA7 Putative integration host factor IHF alpha subunit n=1 Tax=Prevotella oris F0302 RepID=D1QUA7_9BACT Length = 421 Score = 85.6 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 1/100 (1%) Query: 1 MALTK-AEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQ 59 MA+T +++ L DK GL DA+ + L + I ++ QVK+ G G F L + Sbjct: 4 MAMTNMKDIARCLVDKHGLKVADAEHFIALMIDVINEGVQRERQVKIKGLGTFKLTSVSS 63 Query: 60 RPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 R + TGE I I R ++F P +K V + E Sbjct: 64 RESVDVNTGERIVIEGRDKISFTPDNAMKELVNRPFSQFE 103 >UniRef50_Q1DCD2 DNA-binding protein HU n=2 Tax=Cystobacterineae RepID=Q1DCD2_MYXXD Length = 89 Score = 85.6 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 54/89 (60%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKAE+ E + + L+K+ A +++++ F I +A++ + GFG + +R + R Sbjct: 1 MTKAELVEVVAAQTRLTKKSAAQILDIVFTNIGKAVKKDARFSYPGFGTWSVRSRKARKI 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP+T E + + A + + FRP ++LK+ + Sbjct: 61 RNPQTNEMMKLKASKTIGFRPAKELKNSL 89 >UniRef50_C8QYJ3 Histone family protein DNA-binding protein n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYJ3_9DELT Length = 97 Score = 85.6 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 62/91 (68%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 LT+ ++++ + +K+G S+R A +LV++ F+ ++ L E +KL FG F++R K+ R G Sbjct: 6 LTRKDLAKAINEKMGFSQRSAADLVDIVFDRLKATLLAEEPIKLVQFGTFNVRRKSPRQG 65 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TG+ + I+ R +++FRP + ++ R+ Sbjct: 66 RNPRTGDPMEISKRSMISFRPSKSVRERINR 96 >UniRef50_Q8UG61 Integration host factor subunit alpha n=29 Tax=Alphaproteobacteria RepID=IHFA_AGRT5 Length = 112 Score = 85.6 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 46/98 (46%), Positives = 68/98 (69%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T+A+++E +F K+GLS+ ++ ELVE +EI A+ GE VKLS F F +R+KN+R Sbjct: 5 TVTRADLAESVFRKVGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREKNERI 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 GRNPKTGE++PI+ RRV+TF+ LK R+ A + Sbjct: 65 GRNPKTGEEVPISPRRVMTFKASNVLKQRILKAHTARK 102 >UniRef50_B7BF96 Putative uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7BF96_9PORP Length = 99 Score = 85.6 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 48/97 (49%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKAE+ + + G K +VE F E ++ A+ G +V L GFG+F ++ + ++ Sbjct: 1 MTKAEIVARIAKQTGAEKEVVMNVVEAFMESVKGAMIEGNEVFLRGFGSFIIKHRAEKVA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 RN I I A + F+P + V + KD+ Sbjct: 61 RNISQNTTIVIPAHSIPAFKPSKAFADMVNGKNNKDK 97 >UniRef50_A5CZA3 Bacterial nucleoid DNA-binding protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CZA3_PELTS Length = 92 Score = 85.2 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Query: 3 LTKAEMSEYLFDKLGL-SKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K + E + + +AK ++ E I A N V+L GFG F +RD++ R Sbjct: 1 MIKRDFLEAVRAAGNYKTLAEAKRALDAVTEAITFASANHNTVRLRGFGAFIIRDRSPRA 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GR+ +TG+ I I A++V+ F+PG+ L+ V Sbjct: 61 GRDIRTGQPISIPAKKVIVFKPGKALRQAV 90 >UniRef50_B5ERD0 Histone family protein DNA-binding protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ERD0_ACIF5 Length = 91 Score = 85.2 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 49/91 (53%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E L +SK DA+++ ++F + L ++ GF F++ +K R G Sbjct: 1 MNKLEFVAALAQHGAMSKVDAEKMFQVFRHTLETELPTAGKIVFPGFCTFEVAEKPARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP TG++I I A++ + F+ G++ +V + Sbjct: 61 RNPATGQEIDIPAKKSIKFKAGKEFADKVNS 91 >UniRef50_A4S3Z3 Predicted protein n=2 Tax=Ostreococcus RepID=A4S3Z3_OSTLU Length = 115 Score = 85.2 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 41/93 (44%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 L K + +++ + G +K ++ + I + G++V LS FG F + + R G Sbjct: 23 LNKTTLIDHVAKETGETKASVGRVLNATLDAISATVRAGDKVALSKFGTFARKQRKARDG 82 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 RNP TG + I A +F K V+ Sbjct: 83 RNPLTGAALKIPAANYPSFSASSTFKDLVKGKK 115 >UniRef50_Q1J3J9 Histone-like protein DNA-binding protein n=4 Tax=Deinococcus RepID=Q1J3J9_DEIGD Length = 149 Score = 84.8 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 44/87 (50%) Query: 5 KAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRN 64 K ++ + + DK GL+K+ ++E V + A++ G+ V L G G ++ R G Sbjct: 53 KTQLVDMVADKTGLTKKQSEEAVSAMLGVVVDAIKQGKSVGLPGLGTLSVKATAARTGVR 112 Query: 65 PKTGEDIPITARRVVTFRPGQKLKSRV 91 P T E I I A + V F+ LKS + Sbjct: 113 PGTSERIQIPAGKKVAFKVASTLKSSL 139 >UniRef50_C6HU01 Histone family protein DNA-binding protein n=3 Tax=Leptospirillum ferrodiazotrophum RepID=C6HU01_9BACT Length = 99 Score = 84.8 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 1/89 (1%) Query: 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK++++ L + G++ A+ L++ F + ++ L NG+ V++ FG + +K R Sbjct: 1 MTKSDLAARLAREFPGITCPLARTLIDYFLDAMKEGLANGDTVEIRDFGVLRVHEKAPRK 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSR 90 GRNPKTG + I AR+ V F+ G+ LK+ Sbjct: 61 GRNPKTGASVLIPARKTVRFKRGRALKNA 89 >UniRef50_A7HII4 Histone family protein DNA-binding protein n=4 Tax=Anaeromyxobacter RepID=A7HII4_ANADF Length = 123 Score = 84.8 bits (209), Expect = 9e-16, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 46/95 (48%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +T+A+ + + + LSK +++ + + + + L+ ++ L G G L D+ R G Sbjct: 29 MTQAQFFQAVAEGAQLSKAQVRQVFQAVEDVVTKKLKGEGKIPLGGLGAVKLVDRKARIG 88 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97 RNP TGE I I AR + P + LK K Sbjct: 89 RNPATGEQIKIPARTAIKITPAKGLKDIFNKKGKK 123 >UniRef50_C2M9J7 DNA-binding protein HU n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2M9J7_9PORP Length = 90 Score = 84.4 bits (208), Expect = 9e-16, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 48/85 (56%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K + + + DK L+++D K + E E I ++ GE++ L GFG+F + + R G Sbjct: 1 MNKTDFIKTVADKAQLTQKDTKAVYEAIVETIHEEMKKGERLTLVGFGSFYVSQRAARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKL 87 NP++G+ I I A + + F+P L Sbjct: 61 INPRSGKTIDIKASKSIKFKPSTAL 85 >UniRef50_B2UMR7 Histone family protein DNA-binding protein n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UMR7_AKKM8 Length = 101 Score = 84.4 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 53/95 (55%), Gaps = 1/95 (1%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LTK ++ + + ++ + ++V+ + I L G++V + FG F +++ + Sbjct: 4 TLTKRDLVNKISAETNFTQIEVFDIVQRAVDIISSTLAEGDRVVIRNFGTFQVKEVKPKV 63 Query: 62 GRNPKTG-EDIPITARRVVTFRPGQKLKSRVENAS 95 GRNPK +D+PI AR VV F+ G++LK +V + Sbjct: 64 GRNPKNPDQDVPIPARSVVKFKVGKELKDQVAKLT 98 >UniRef50_Q6KHG3 Bacterial nucleoid DNA-binding protein HU n=2 Tax=Bacteria RepID=Q6KHG3_MYCMO Length = 108 Score = 84.4 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 31/90 (34%), Positives = 51/90 (56%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK ++ + + SK++ +E+V F EEI L +++ LS FG F++ ++ R G Sbjct: 18 ITKKDLIATIAENQNKSKKEVEEIVNAFLEEISSELVADKKINLSSFGIFEISERAARSG 77 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 NPKT E I I A + V F+ + LK +V Sbjct: 78 INPKTSEIIQIKATKSVKFKVSKSLKDQVN 107 >UniRef50_B8DML6 Histone family protein DNA-binding protein n=5 Tax=Desulfovibrio RepID=B8DML6_DESVM Length = 95 Score = 84.4 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 3 LTKAEMSEYLFDKLG---LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQ 59 LTKAE L + L ++K A++ + F + + NG V+L G G F + ++ Sbjct: 2 LTKAEFVAALKEALPDVFVTKVSAEKAYDAFCSVLADGVANGAGVRLPGVGAFSVTERAA 61 Query: 60 RPGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 R GRNP+TG+ I I AR+ V F + L + Sbjct: 62 RTGRNPQTGQSISIPARKAVKFMAAKTLVDGLNK 95 >UniRef50_Q4A5S4 Bacterial nucleoid DNA-binding protein n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A5S4_MYCS5 Length = 91 Score = 84.4 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 27/91 (29%), Positives = 50/91 (54%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK E + + DK GL+ + + + F ++ L GE+V+LS G FD+ + +R Sbjct: 1 MTKTEFIKAVSDKTGLTVGELNRVFDGFVYVLQEQLVAGEKVQLSNLGIFDVATRAERTI 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 +N TG++ + A++VV ++P + L V Sbjct: 61 KNHFTGKEQVVAAKKVVKYKPSKYLTDVVNE 91 >UniRef50_C6XF17 Integration host factor subunit alpha n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XF17_LIBAP Length = 114 Score = 84.4 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 30/90 (33%), Positives = 52/90 (57%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T++++ + + + GLS++D+ V F EI + GE +K+S F F ++ K R Sbjct: 4 TITRSDLVKSISKEFGLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRN +T +++ I RRVV F+ LK R+ Sbjct: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93 >UniRef50_A3ER44 Putative integration host factor, beta-subunit n=2 Tax=Leptospirillum sp. Group II RepID=A3ER44_9BACT Length = 98 Score = 84.1 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 32/97 (32%), Positives = 60/97 (61%), Gaps = 1/97 (1%) Query: 3 LTKAEMSEYLFDK-LGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T+ ++ + + +K G+S D++ELV FE ++ + GE +++ FG F++ + R Sbjct: 1 MTRDDLIKRIAEKNAGISLSDSRELVLDLFESMKSVILEGESLEIRRFGVFEIHHRKPRI 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKD 98 RNP+TGE + + R+ + FRPG+ LK R++N + K Sbjct: 61 ARNPRTGEKVSVGERKSLIFRPGKILKLRMKNLTRKS 97 >UniRef50_B9K3N0 HNS-type DNA binding protein n=11 Tax=Alphaproteobacteria RepID=B9K3N0_AGRVS Length = 92 Score = 84.1 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 1/93 (1%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M T E+++ + + L K AK +VE F++I A G + + FG F L+D +R Sbjct: 1 MT-TTNEIADKIAAEQNLPKAQAKTIVESVFKQITEAALAGAETSIPSFGKFKLKDTPER 59 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNP TG I I A + +TF PG+ +K + Sbjct: 60 EGRNPATGATIKIAASKKLTFTPGKAVKDALNG 92 >UniRef50_A7AMR9 Putative uncharacterized protein n=1 Tax=Babesia bovis RepID=A7AMR9_BABBO Length = 175 Score = 84.1 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 43/97 (44%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK ++ + ++++D +V+ F + I + L ++V ++ FG F + R Sbjct: 78 TVTKKQLISEIAQTTNMTQKDVGIVVDEFLKSIVKHLGENKEVSIAKFGLFHNSLRGPRL 137 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKD 98 +N +TGE V R + +K+ V + Sbjct: 138 MKNLQTGEMYTAKPVYVPNVRFYEAVKAEVNQSLKPS 174 >UniRef50_C4LBB5 Histone family protein DNA-binding protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBB5_TOLAT Length = 91 Score = 84.1 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 48/91 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAE+ + ++ +K A E + + ++R L GE + + G G F + +K R G Sbjct: 1 MKKAELINAVATEMNTAKHIADEALFALGKVLQRQLVAGEPLLIPGIGTFSILNKAARLG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TGE + I A++ V F+ + L V Sbjct: 61 RNPQTGETVEIAAKKTVKFKAAKALADAVNE 91 >UniRef50_P64387 Probable DNA-binding protein HU n=12 Tax=Chlamydiaceae RepID=DBH_CHLMU Length = 100 Score = 84.1 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +TK ++ + + + +++ F +++ AL G++++ FG + ++ + Sbjct: 3 TMTKKKLISTISQDHKIHPNHVRTVIQNFLDKMTDALVQGDRLEFRDFGVLQVVERKPKV 62 Query: 62 GRNPKTGE-DIPITARRVVTFRPGQKLKSRVENASPKD 98 GRNPK I I ARR V F PG+++K +E + Sbjct: 63 GRNPKNAAVPIHIPARRAVKFTPGKRMKRLIETPTKSS 100 >UniRef50_Q3BZX6 Histone-like family DNA-binding protein n=1 Tax=Xanthomonas campestris pv. vesicatoria str. 85-10 RepID=Q3BZX6_XANC5 Length = 99 Score = 84.1 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 48/97 (49%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+ ++ + + +++ +A +V+ E + L +V ++ FG F L+ K R Sbjct: 1 MNKSALASAIAHRHAMTQAEASSIVDTVTEVVALMLLEHGRVNINRFGRFRLQHKPPRQA 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 RNPKTGE + + R V F +LK R ++ + Sbjct: 61 RNPKTGETVQVGERVAVQFTAADELKRRFLDSKNGNR 97 >UniRef50_D1W7T0 DNA-binding protein HU n=2 Tax=Prevotella RepID=D1W7T0_9BACT Length = 458 Score = 84.1 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 1/98 (1%) Query: 3 LTK-AEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K +++ L ++ LSK +A+ + L + + L+ +QVK+ G G F + N R Sbjct: 1 MIKITDLASVLEEQHQLSKSEAEFFIPLLVDVLTTGLKADKQVKIKGLGTFKVTSVNARE 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 + TGE I I R ++F P L+ +V + + E Sbjct: 61 SVDVNTGERIIIEGREKISFTPEPILRDKVNSPFEQFE 98 >UniRef50_Q0BW86 DNA-binding protein HU n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BW86_GRABC Length = 101 Score = 83.7 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 47/91 (51%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + A++ + + +K +V E I L+ GE+V++SG G FD+ ++ R G Sbjct: 1 MNHADLIDKIAKSTDQTKATVDAVVSAAIETISATLKAGEEVRISGLGIFDVSERAARQG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP+TG I I A R FR G+ LK V Sbjct: 61 RNPQTGATIEIAATRAARFRAGKALKDAVNG 91 >UniRef50_C6IB23 HU family DNA-binding protein n=6 Tax=Bacteroides RepID=C6IB23_9BACE Length = 96 Score = 83.7 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 30/85 (35%), Positives = 45/85 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K ++ + K L K +VE E I AL GE V L GFG F+++++ R G Sbjct: 1 MKKIDLIRSIAVKSNLKKEQIAIVVEGVMEAIAEALHQGESVTLVGFGTFEVKERKARKG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKL 87 N TGE + I ++ V F+PG K+ Sbjct: 61 YNLSTGEIMTIPGKKTVRFKPGAKM 85 >UniRef50_A4X4D0 Histone family protein DNA-binding protein n=24 Tax=Actinomycetales RepID=A4X4D0_SALTO Length = 237 Score = 83.7 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + KAE+ E L +LG ++ A ++ E++ A+ GE+V ++GFG F+ R + R Sbjct: 17 VVNKAELIETLAVRLG-DRKTASAALDAVLTEVQAAVTKGEKVSITGFGAFEKRVRGART 75 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNP+TGE + + V TFRPG K V + Sbjct: 76 ARNPRTGEAVKVKKTSVPTFRPGTGFKEMVASG 108 >UniRef50_B7B9I2 Putative uncharacterized protein n=3 Tax=Parabacteroides RepID=B7B9I2_9PORP Length = 136 Score = 83.3 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 1/95 (1%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M TK + + L ++ + AK+ + + E I L GE V + FG + +R Sbjct: 43 MT-TKRALIKELAQRMECTDVAAKKFLNSYIELITEKLSEGEGVSIHYFGKLVPHYQTER 101 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 PGRN +TGE+ I AR V F+ + L ++ Sbjct: 102 PGRNLRTGEECKIRARTSVKFKASEILIQKLNTGK 136 >UniRef50_C7H232 DNA binding protein HU n=3 Tax=Ruminococcaceae RepID=C7H232_9FIRM Length = 103 Score = 83.3 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 48/92 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +T+++M E + K G ++ + ++ F++I L E+V ++GFG F++R + + Sbjct: 1 MTRSQMIETVARKTGFTEAQVETTMDALFDQIADCLRADEKVTIAGFGRFEMRPRKPKAY 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 NPKT + + + F+ + K ++E Sbjct: 61 TNPKTKVSSRLESTSIPGFKASGRFKQKLEAG 92 >UniRef50_Q92J57 DNA-binding protein HU n=10 Tax=spotted fever group RepID=DBH_RICCN Length = 99 Score = 83.3 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 9/99 (9%) Query: 3 LTKAEMSEYLFDKLG---------LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFD 53 + K E ++ D L+K +A++ + L + + A+++ + ++GFG+F+ Sbjct: 1 MNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFE 60 Query: 54 LRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 + + R GRNPKTG + I A TFR G+K+K Sbjct: 61 IHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEACN 99 >UniRef50_B9XSG3 Histone family protein DNA-binding protein n=4 Tax=Chlamydiae/Verrucomicrobia group RepID=B9XSG3_9BACT Length = 119 Score = 83.3 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 57/97 (58%), Gaps = 1/97 (1%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 M +TK ++ + ++ GL ++ ++V+ + I AL G++V+L FG F+++ + R Sbjct: 1 MTMTKRDLVIRISNETGLVQQQVLDVVQKTLDYIAEALSKGDKVELRNFGVFEVKVRKAR 60 Query: 61 PGRNPKTGED-IPITARRVVTFRPGQKLKSRVENASP 96 GRNP +PI R VV F+PG+++++ V SP Sbjct: 61 IGRNPNAPATDVPIPQRSVVKFKPGKEMRAEVFKLSP 97 >UniRef50_B2ICU5 Histone family protein DNA-binding protein n=2 Tax=Beijerinckiaceae RepID=B2ICU5_BEII9 Length = 122 Score = 83.3 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 1/93 (1%) Query: 2 ALTKAEMSEYLFDKLG-LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 T+A++ + ++ LS+ +E+ E+ EEI AL GE VKL FG F +R K +R Sbjct: 19 TATRADLLDAIYTSCSFLSRAQTREIFEMALEEISEALLRGETVKLRSFGLFSVRAKRER 78 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 GRNP+TG ++PI RRV+TF+ L + V Sbjct: 79 IGRNPRTGVEVPIKPRRVLTFKASPVLAASVNG 111 >UniRef50_B9JPN0 Integration host factor alpha-subunit protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JPN0_AGRRK Length = 117 Score = 83.3 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 42/94 (44%), Positives = 65/94 (69%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 LT+A+++ + ++GLS+ ++ ELV+ EEI AL GE V LS F F++R+K++RP Sbjct: 5 TLTRADITHSIIRQIGLSRTESAELVDTILEEICSALIRGENVGLSSFAAFNVREKSRRP 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 GRNPKTGED I ARRV++F +K++++ A Sbjct: 65 GRNPKTGEDYQIAARRVISFTASDAVKTQIQKAH 98 >UniRef50_A6L5T8 DNA-binding protein HU n=2 Tax=Bacteroidales RepID=A6L5T8_BACV8 Length = 94 Score = 83.3 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 47/91 (51%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TKAE+ + + K G + +VE E++ +LE GE V L GFG+F ++ + ++ Sbjct: 1 MTKAELCKKISAKTGCDAQTILAVVESLMVEVKESLEKGENVYLRGFGSFIVKQRAEKTT 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RN I I A + F+P ++L V Sbjct: 61 RNISKNTTIIIPAHNIPAFKPSKELVKLVNK 91 >UniRef50_A5VG36 Histone family protein DNA-binding protein n=2 Tax=Alphaproteobacteria RepID=A5VG36_SPHWW Length = 92 Score = 83.3 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 55/91 (60%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + ++++++L G +K DA++ V+L F I A GE+V L+GFG F ++D R G Sbjct: 2 MNNSDLADHLAGATGATKADARKAVDLVFAAIADAAAKGEEVSLNGFGKFKVKDVLAREG 61 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNP TGE I I A + ++F + +K R+ + Sbjct: 62 RNPATGETIKIAASKKLSFSVAKAVKDRLNS 92 >UniRef50_D1PVJ0 Putative uncharacterized protein n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PVJ0_9BACT Length = 494 Score = 83.3 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 3/100 (3%) Query: 3 LTK---AEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQ 59 + K E++ L DK GL + +++ V L F+ + L++ Q K+ G G F + Sbjct: 1 MNKIGNKELARLLVDKFGLDRAASEDFVRLIFDVVNDGLKDDSQAKIKGLGTFKITRVAP 60 Query: 60 RPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 R + TGE I I R ++F ++++V + E Sbjct: 61 RKSVDVNTGEPIIIEGRDKMSFTADVSMRNQVNRPFSQFE 100 >UniRef50_B5YH73 DNA-binding protein HU 1 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH73_THEYD Length = 92 Score = 82.9 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 55/92 (59%), Gaps = 1/92 (1%) Query: 3 LTKAEMSEYLFDKLG-LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 + K+E+ E + K+ L+K+ + ++++ F+ + L GE++++ GF NF ++ + +R Sbjct: 1 MKKSELIERVSKKVDILTKKQIETIIDMIFDCMIETLSRGEKIEIRGFANFKVKQRPERI 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 RNPKTGE I + +R + F+ + LK + Sbjct: 61 ARNPKTGEQIKVPTQRAINFKMSKALKEALNK 92 >UniRef50_O67923 Integration host factor beta subunit n=2 Tax=Aquificaceae RepID=O67923_AQUAE Length = 100 Score = 82.9 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 58/97 (59%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +TK+++++ L + G+S + A +V + FE ++ + NGE+V++ G G F L+ K R Sbjct: 1 MTKSDIAKELARRHGISYKKALLIVNMTFEILKAKILNGEKVEVRGLGTFKLKRKPGRFV 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 +NPKTG +I + R V ++ + L+ ++ ++E Sbjct: 61 KNPKTGIEIYVKERYVPYYKMSKLLRKKLNGDKEREE 97 >UniRef50_C6X423 DNA-binding protein HU-beta n=3 Tax=Flavobacteriaceae RepID=C6X423_FLAB3 Length = 96 Score = 82.9 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 1/96 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALE-NGEQVKLSGFGNFDLRDKNQRP 61 + K+E+ + + + G++K AK +E F + L +V L GFG F + ++ R Sbjct: 1 MNKSELIDAMANDAGITKVAAKAALESFISNVTATLSQKDGKVSLVGFGTFSVAERAARQ 60 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97 G NP T + I I A+ V F+ G L V K Sbjct: 61 GINPATKKPIKIAAKTVAKFKAGADLAGSVMGGKKK 96 >UniRef50_C6XIY2 Histone family protein DNA-binding protein n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XIY2_HIRBI Length = 103 Score = 82.5 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 43/98 (43%), Positives = 64/98 (65%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T+A++ + L ++GL+++D+ + +E E + L VKL+ FGNF +R KN R Sbjct: 5 TITRADIVDKLVSEVGLTRQDSSDYLERVLEMVCEELVADNSVKLARFGNFVVRRKNARV 64 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE 99 GRNPKTG++ PITARRVVTF+P ++ RVE A E Sbjct: 65 GRNPKTGKEAPITARRVVTFKPSPLMRRRVEAALASKE 102 >UniRef50_B0SI26 DNA-binding protein, IHF-related n=3 Tax=Bacteria RepID=B0SI26_LEPBA Length = 101 Score = 82.5 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 44/89 (49%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K+EM L + G++K++ ++ F E + + + G G R++ +R G Sbjct: 8 MKKSEMLSELAETTGMTKKNVAAFLDSFVELAYKETKKNGAFVIPGLGKLVKRNRPKRKG 67 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP TGE I I A+ VV F + K V Sbjct: 68 RNPATGEAIVIPAKTVVKFTLSKTCKDAV 96 >UniRef50_D2LFF2 Histone family protein DNA-binding protein n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LFF2_RHOVA Length = 126 Score = 82.1 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 50/89 (56%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 +T +++ + + GLS++ A E++ I + L+ G +++++G G ++R + R G Sbjct: 38 VTLRQLATEVAEAHGLSQKQANEVLSEAVSSIGKHLKKGARIRIAGLGTLEVRKRAARTG 97 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91 RNP TGE I I A + V FR + L + Sbjct: 98 RNPATGEAIEIKASKKVAFRAAKDLSESI 126 >UniRef50_Q602W2 Prophage MuMc02, DNA-binding protein HU n=2 Tax=Proteobacteria RepID=Q602W2_METCA Length = 95 Score = 81.7 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 2/94 (2%) Query: 3 LTKAEMSEYLFDKLG--LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 + ++++ + + L+K + ++ + AL NG++V + G ++++ R Sbjct: 1 MNQSQLINAIHEDANGSLTKTVIQRVLIALANVAQEALANGDEVTIPGVAKLTVKERAAR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 GRNP+TGE + I A+RV + LK RV+ Sbjct: 61 TGRNPQTGETVEIPAKRVARASFVKALKERVQGG 94 >UniRef50_A6W7Q9 Histone family protein DNA-binding protein n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W7Q9_KINRD Length = 179 Score = 81.7 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + KAEM + L +LG ++ A VE E I+ + G++V +SGFG F+ + +N R G Sbjct: 1 MNKAEMVDALEARLG-GRKQAVSAVEAVVELIQLTVAKGDKVAISGFGTFEKQARNARTG 59 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENAS 95 RNP+TGE + I V FRPG K V + Sbjct: 60 RNPRTGEAVKIKKTSVPRFRPGTAFKEIVSDTK 92 >UniRef50_Q1RHD4 DNA-binding protein HU n=5 Tax=Rickettsia RepID=DBH_RICBR Length = 101 Score = 81.7 bits (201), Expect = 7e-15, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 9/100 (9%) Query: 3 LTKAEMSEYLFDKL---------GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFD 53 + K E ++ + +K DA++ + E I A ++ V ++GFG+F Sbjct: 1 MNKTEFIAFMTEHGHHHKHQGHKSFTKADAEKALNWVLESIISATKHQHSVNITGFGSFG 60 Query: 54 LRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93 ++ + R GRNPKTG + I A + F+ G KLK N Sbjct: 61 IQSRKSREGRNPKTGAKMTIPAYKQPVFKAGSKLKEACNN 100 >UniRef50_Q3SRD9 Histone-like DNA-binding protein n=6 Tax=Bacteria RepID=Q3SRD9_NITWN Length = 99 Score = 81.4 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 50/90 (55%) Query: 2 ALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRP 61 +T ++ L + LSK+ A+ ++ I + L+ G+++++ G G +R + R Sbjct: 10 TVTLKHLAAALAEDHELSKKAAEAILSDMVTRITKHLKKGDRIRIVGLGILQVRKRAARK 69 Query: 62 GRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 GRNP TGE+I I A + V FR ++LK + Sbjct: 70 GRNPATGEEIQIKASKKVAFRAAKELKEAI 99 >UniRef50_A1AQ83 Histone family protein DNA-binding protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1AQ83_PELPD Length = 126 Score = 81.4 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 48/92 (52%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 + K E+ + + L+K A++++++F AL+ G++V + GFG F + R G Sbjct: 1 MNKTELVAKIAEGAELTKVQAEKVLDIFIASTTAALKAGDKVAIIGFGAFSAVTRKARTG 60 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENA 94 RNP+TG+ + I + F PG+ LK Sbjct: 61 RNPQTGKALQIAEKTNGKFTPGKALKDLTAKP 92 >UniRef50_UPI0001BC8A49 single-stranded binding protein n=2 Tax=Pseudomonas syringae group RepID=UPI0001BC8A49 Length = 104 Score = 81.4 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 52/98 (53%) Query: 1 MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQR 60 MALTK ++ + + + K A++ +E + + LE+G ++ L G G + ++ R Sbjct: 1 MALTKDQLVAGIAEAIDAPKTTARKALEQLGQIVADQLESGAEITLPGIGKLKVAERPAR 60 Query: 61 PGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKD 98 GRNP TG I I A++ + F P + L + SP++ Sbjct: 61 TGRNPSTGAAIEIAAKKAIKFVPAKVLNDSINKGSPQN 98 >UniRef50_Q02VJ4 Nucleoid DNA-binding protein n=2 Tax=Lactococcus lactis RepID=Q02VJ4_LACLS Length = 103 Score = 81.4 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 7/96 (7%) Query: 3 LTKAEMSEYLFDKLG-------LSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLR 55 + K E+++ + +K G L+ ++K++V+ I L ++++ FG F+ + Sbjct: 2 VNKKELAKAISEKSGNIMKKHPLTIYESKKVVDAITASITELLVQDGKIQMIDFGTFEKK 61 Query: 56 DKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRV 91 + R G NP+ GE I I + V TF+ G+ LK V Sbjct: 62 TRASRGGFNPQVGERIQIPEKTVPTFKAGKGLKEAV 97 >UniRef50_A4EV14 DNA-binding protein HU n=1 Tax=Roseobacter sp. SK209-2-6 RepID=A4EV14_9RHOB Length = 94 Score = 81.4 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 44/90 (48%) Query: 3 LTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62 L + + + ++ S+ K ++ E+I +A E G + G G F ++ R G Sbjct: 4 LNYSGLIRAIAEETSQSQEAVKAVLSALTEQIIKAAEGGSDTTIPGLGVFKRSERAARKG 63 Query: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVE 92 RNP TG +I I A ++F+P + K R+ Sbjct: 64 RNPSTGVEIEIAASSSLSFKPAKAAKDRLN 93 >UniRef50_Q02ZW9 Nucleoid DNA-binding protein n=5 Tax=Lactococcus lactis RepID=Q02ZW9_LACLS Length = 120 Score = 81.4 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 44/85 (51%) Query: 4 TKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGR 63 +K E+ +Y+ D+ LSK +A + + F E I + G V +S FG F++R R Sbjct: 3 SKQELIDYVADRTELSKVNAAKAINAFVEAITYYISEGATVHISNFGTFEVRKHAARISH 62 Query: 64 NPKTGEDIPITARRVVTFRPGQKLK 88 + + E I + + + FR G+ LK Sbjct: 63 DVHSREKILVGEQNIPVFRAGKALK 87 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.310 0.163 0.449 Lambda K H 0.267 0.0499 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 671,247,991 Number of Sequences: 3077464 Number of extensions: 27046466 Number of successful extensions: 78642 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1460 Number of HSP's successfully gapped in prelim test: 149 Number of HSP's that attempted gapping in prelim test: 76767 Number of HSP's gapped (non-prelim): 1624 length of query: 99 length of database: 1,040,396,356 effective HSP length: 68 effective length of query: 31 effective length of database: 831,128,804 effective search space: 25764992924 effective search space used: 25764992924 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.4 bits) S2: 88 (38.2 bits)