Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	K	T	F	A	R	S	S	L	C	A	L	S	M	T	I	M	T	A	H	A	A	E	P	P	T	N	L	D	K	P	E	G	R	L	D	I	I	A	W	P	G	Y	I	E	R	G	Q	T	D	K	Q	Y	D	W	V	T	Q	F
Secondary structure
SS confidence
Disorder		?	?	?																		?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	K	E	T	G	C	A	V	N	V	K	T	A	A	T	S	D	E	M	V	S	L	M	T	K	G	G	Y	D	L	V	T	A	S	G	D	A	S	L	R	L	I	M	G	K	R	V	Q	P	I	N	T	A	L	I	P	N	W	K	T
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	D	P	R	V	V	K	G	D	W	F	N	V	G	G	K	V	Y	G	T	P	Y	Q	W	G	P	N	L	L	M	Y	N	T	K	T	F	P	T	P	P	D	S	W	Q	V	V	F	V	E	Q	N	L	P	D	G	K	S	N	K	G
Secondary structure
SS confidence
Disorder																																																					?	?	?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		R	V	Q	A	Y	D	G	P	I	Y	I	A	D	A	A	L	F	V	K	A	T	Q	P	Q	L	G	I	S	D	P	Y	Q	L	T	E	E	Q	Y	Q	A	V	L	K	V	L	R	A	Q	H	S	L	I	H	R	Y	W	H	D	T	T
Secondary structure
SS confidence
Disorder																						?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	Q	M	S	D	F	K	N	E	G	V	V	A	S	S	A	W	P	Y	Q	A	N	A	L	K	A	E	G	Q	P	V	A	T	V	F	P	K	E	G	V	T	G	W	A	D	T	T	M	L	H	S	E	A	K	H	P	V	C	A	Y
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		K	W	M	N	W	S	L	T	P	K	V	Q	G	D	V	A	A	W	F	G	S	L	P	V	V	P	E	G	C	K	A	S	P	L	L	G	E	K	G	C	E	T	N	G	F	N	Y	F	D	K	I	A	F	W	K	T	P	I	A	E
Secondary structure
SS confidence
Disorder																														?		?	?	?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Sequence		G	G	K	F	V	P	Y	S	R	W	T	Q	D	Y	I	A	I	M	G	G	R
Secondary structure
SS confidence
Disorder																			?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3osq chain A Region: 37 - 381 Aligned: 336 Modelled: 345 Confidence: 100.0% Identity: 15% PDB header:fluorescent protein, transport protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, green fluorescent PDBTitle: maltose-bound maltose sensor engineered by insertion of circularly2 permuted green fluorescent protein into e. coli maltose binding3 protein at position 175 Phyre2 PDB 3ob4 chain A Region: 31 - 377 Aligned: 328 Modelled: 343 Confidence: 100.0% Identity: 15% PDB header:allergen Chain: A: PDB Molecule:maltose abc transporter periplasmic protein, arah 2; PDBTitle: mbp-fusion protein of the major peanut allergen ara h 2 Phyre2 PDB 3f5f chain A Region: 31 - 377 Aligned: 328 Modelled: 331 Confidence: 100.0% Identity: 15% PDB header:transport, transferase Chain: A: PDB Molecule:maltose-binding periplasmic protein, heparan PDBTitle: crystal structure of heparan sulfate 2-o-sulfotransferase2 from gallus gallus as a maltose binding protein fusion. Phyre2 PDB 3py7 chain A Region: 32 - 377 Aligned: 327 Modelled: 330 Confidence: 100.0% Identity: 15% PDB header:viral protein Chain: A: PDB Molecule:maltose-binding periplasmic protein,paxillin ld1,protein e6 PDBTitle: crystal structure of full-length bovine papillomavirus oncoprotein e62 in complex with ld1 motif of paxillin at 2.3a resolution Phyre2 PDB 3h4z chain C Region: 32 - 377 Aligned: 327 Modelled: 330 Confidence: 100.0% Identity: 15% PDB header:allergen Chain: C: PDB Molecule:maltose-binding periplasmic protein fused with allergen PDBTitle: crystal structure of an mbp-der p 7 fusion protein Phyre2 PDB 3dm0 chain A Region: 31 - 377 Aligned: 328 Modelled: 343 Confidence: 100.0% Identity: 15% PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana Phyre2 PDB 3o3u chain N Region: 32 - 377 Aligned: 327 Modelled: 342 Confidence: 100.0% Identity: 15% PDB header:transport protein, signaling protein Chain: N: PDB Molecule:maltose-binding periplasmic protein, advanced glycosylation PDBTitle: crystal structure of human receptor for advanced glycation endproducts2 (rage) Phyre2 PDB 1y4c chain A Region: 33 - 381 Aligned: 338 Modelled: 345 Confidence: 100.0% Identity: 14% PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp Phyre2 PDB 3d4c chain A Region: 33 - 377 Aligned: 326 Modelled: 329 Confidence: 100.0% Identity: 15% PDB header:cell adhesion Chain: A: PDB Molecule:maltose-binding periplasmic protein, linker, zona pellucida PDBTitle: zp-n domain of mammalian sperm receptor zp3 (crystal form i) Phyre2 PDB 3mp6 chain A Region: 31 - 381 Aligned: 338 Modelled: 347 Confidence: 100.0% Identity: 15% PDB header:histone binding protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, linker, saga- PDBTitle: complex structure of sgf29 and dimethylated h3k4 Phyre2 PDB 1r6z chain A Region: 32 - 381 Aligned: 338 Modelled: 346 Confidence: 100.0% Identity: 14% PDB header:gene regulation Chain: A: PDB Molecule:chimera of maltose-binding periplasmic protein and PDBTitle: the crystal structure of the argonaute2 paz domain (as a mbp fusion) Phyre2 PDB 3osr chain A Region: 28 - 331 Aligned: 297 Modelled: 300 Confidence: 100.0% Identity: 16% PDB header:fluorescent protein, transport protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, green fluorescent PDBTitle: maltose-bound maltose sensor engineered by insertion of circularly2 permuted green fluorescent protein into e. coli maltose binding3 protein at position 311 Phyre2 PDB 1hsj chain A Region: 31 - 381 Aligned: 338 Modelled: 347 Confidence: 100.0% Identity: 15% PDB header:transcription/sugar binding protein Chain: A: PDB Molecule:fusion protein consisting of staphylococcus PDBTitle: sarr mbp fusion structure Phyre2 PDB 3c4m chain A Region: 32 - 381 Aligned: 338 Modelled: 346 Confidence: 100.0% Identity: 14% PDB header:membrane protein Chain: A: PDB Molecule:fusion protein of maltose-binding periplasmic protein and PDBTitle: structure of human parathyroid hormone in complex with the2 extracellular domain of its g-protein-coupled receptor (pth1r) Phyre2 PDB 1a99 chain A Region: 33 - 380 Aligned: 327 Modelled: 348 Confidence: 100.0% Identity: 22% Fold: Periplasmic binding protein-like II Superfamily: Periplasmic binding protein-like II Family: Phosphate binding protein-like Phyre2 PDB 2vgq chain A Region: 32 - 381 Aligned: 338 Modelled: 346 Confidence: 100.0% Identity: 14% PDB header:immune system/transport Chain: A: PDB Molecule:maltose-binding periplasmic protein, PDBTitle: crystal structure of human ips-1 card Phyre2 PDB 2nvu chain B Region: 31 - 381 Aligned: 327 Modelled: 330 Confidence: 100.0% Identity: 16% PDB header:protein turnover, ligase Chain: B: PDB Molecule:maltose binding protein/nedd8-activating enzyme PDBTitle: structure of appbp1-uba3~nedd8-nedd8-mgatp-ubc12(c111a), a2 trapped ubiquitin-like protein activation complex Phyre2 PDB 3oai chain B Region: 31 - 381 Aligned: 339 Modelled: 347 Confidence: 100.0% Identity: 14% PDB header:membrane protein, cell adhesion Chain: B: PDB Molecule:maltose-binding periplasmic protein, myelin protein p0; PDBTitle: crystal structure of the extra-cellular domain of human myelin protein2 zero Phyre2 PDB 1elj chain A Region: 31 - 381 Aligned: 343 Modelled: 351 Confidence: 100.0% Identity: 13% Fold: Periplasmic binding protein-like II Superfamily: Periplasmic binding protein-like II Family: Phosphate binding protein-like Phyre2 PDB 3csg chain A Region: 37 - 381 Aligned: 336 Modelled: 345 Confidence: 100.0% Identity: 14% PDB header:de novo protein, sugar binding protein Chain: A: PDB Molecule:maltose-binding protein monobody ys1 fusion; PDBTitle: crystal structure of monobody ys1(mbp-74)/maltose binding2 protein fusion complex Phyre2 1 c3osqA_ 2 c3ob4A_ 3 c3f5fA_ 4 c3py7A_ 5 c3h4zC_ 6 c3dm0A_ 7 c3o3uN_ 8 c1y4cA_ 9 c3d4cA_ 10 c3mp6A_ 11 c1r6zA_ 12 c3osrA_ 13 c1hsjA_ 14 c3c4mA_ 15 d1a99a_ 16 c2vgqA_ 17 c2nvuB_ 18 c3oaiB_ 19 d1elja_ 20 c3csgA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3osqA_ 100.0 15 PDB header:fluorescent protein, transport protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, green fluorescent PDBTitle: maltose-bound maltose sensor engineered by insertion of circularly2 permuted green fluorescent protein into e. coli maltose binding3 protein at position 175 2 c3ob4A_ 100.0 15 PDB header:allergen Chain: A: PDB Molecule:maltose abc transporter periplasmic protein, arah 2; PDBTitle: mbp-fusion protein of the major peanut allergen ara h 2 3 c3f5fA_ 100.0 15 PDB header:transport, transferase Chain: A: PDB Molecule:maltose-binding periplasmic protein, heparan PDBTitle: crystal structure of heparan sulfate 2-o-sulfotransferase2 from gallus gallus as a maltose binding protein fusion. 4 c3py7A_ 100.0 15 PDB header:viral protein Chain: A: PDB Molecule:maltose-binding periplasmic protein,paxillin ld1,protein e6 PDBTitle: crystal structure of full-length bovine papillomavirus oncoprotein e62 in complex with ld1 motif of paxillin at 2.3a resolution 5 c3h4zC_ 100.0 15 PDB header:allergen Chain: C: PDB Molecule:maltose-binding periplasmic protein fused with allergen PDBTitle: crystal structure of an mbp-der p 7 fusion protein 6 c3dm0A_ 100.0 15 PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana 7 c3o3uN_ 100.0 15 PDB header:transport protein, signaling protein Chain: N: PDB Molecule:maltose-binding periplasmic protein, advanced glycosylation PDBTitle: crystal structure of human receptor for advanced glycation endproducts2 (rage) 8 c1y4cA_ 100.0 14 PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp 9 c3d4cA_ 100.0 15 PDB header:cell adhesion Chain: A: PDB Molecule:maltose-binding periplasmic protein, linker, zona pellucida PDBTitle: zp-n domain of mammalian sperm receptor zp3 (crystal form i) 10 c3mp6A_ 100.0 15 PDB header:histone binding protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, linker, saga- PDBTitle: complex structure of sgf29 and dimethylated h3k4 11 c1r6zA_ 100.0 14 PDB header:gene regulation Chain: A: PDB Molecule:chimera of maltose-binding periplasmic protein and PDBTitle: the crystal structure of the argonaute2 paz domain (as a mbp fusion) 12 c3osrA_ 100.0 16 PDB header:fluorescent protein, transport protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, green fluorescent PDBTitle: maltose-bound maltose sensor engineered by insertion of circularly2 permuted green fluorescent protein into e. coli maltose binding3 protein at position 311 13 c1hsjA_ 100.0 15 PDB header:transcription/sugar binding protein Chain: A: PDB Molecule:fusion protein consisting of staphylococcus PDBTitle: sarr mbp fusion structure 14 c3c4mA_ 100.0 14 PDB header:membrane protein Chain: A: PDB Molecule:fusion protein of maltose-binding periplasmic protein and PDBTitle: structure of human parathyroid hormone in complex with the2 extracellular domain of its g-protein-coupled receptor (pth1r) 15 d1a99a_ 100.0 22 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 16 c2vgqA_ 100.0 14 PDB header:immune system/transport Chain: A: PDB Molecule:maltose-binding periplasmic protein, PDBTitle: crystal structure of human ips-1 card 17 c2nvuB_ 100.0 16 PDB header:protein turnover, ligase Chain: B: PDB Molecule:maltose binding protein/nedd8-activating enzyme PDBTitle: structure of appbp1-uba3~nedd8-nedd8-mgatp-ubc12(c111a), a2 trapped ubiquitin-like protein activation complex 18 c3oaiB_ 100.0 14 PDB header:membrane protein, cell adhesion Chain: B: PDB Molecule:maltose-binding periplasmic protein, myelin protein p0; PDBTitle: crystal structure of the extra-cellular domain of human myelin protein2 zero 19 d1elja_ 100.0 13 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 20 c3csgA_ 100.0 14 PDB header:de novo protein, sugar binding protein Chain: A: PDB Molecule:maltose-binding protein monobody ys1 fusion; PDBTitle: crystal structure of monobody ys1(mbp-74)/maltose binding2 protein fusion complex 21 d1pota_ not modelled 100.0 22 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 22 c2zykA_ not modelled 100.0 17 PDB header:sugar binding protein Chain: A: PDB Molecule:solute-binding protein; PDBTitle: crystal structure of cyclo/maltodextrin-binding protein2 complexed with gamma-cyclodextrin 23 c2v84A_ not modelled 100.0 18 PDB header:transport protein Chain: A: PDB Molecule:spermidine/putrescine abc transporter, periplasmic PDBTitle: crystal structure of the tp0655 (tppotd) lipoprotein of2 treponema pallidum 24 c3ehuA_ not modelled 100.0 15 PDB header:membrane protein Chain: A: PDB Molecule:fusion protein of crfr1 extracellular domain and mbp; PDBTitle: crystal structure of the extracellular domain of human corticotropin2 releasing factor receptor type 1 (crfr1) in complex with crf 25 c3k02A_ not modelled 100.0 12 PDB header:transport protein Chain: A: PDB Molecule:acarbose/maltose binding protein gach; PDBTitle: crystal structures of the gach receptor of streptomyces glaucescens2 gla.o in the unliganded form and in complex with acarbose and an3 acarbose homolog. comparison with acarbose-loaded maltose binding4 protein of salmonella typhimurium. 26 c1mg1A_ not modelled 100.0 14 PDB header:viral protein Chain: A: PDB Molecule:protein (htlv-1 gp21 ectodomain/maltose-binding protein PDBTitle: htlv-1 gp21 ectodomain/maltose-binding protein chimera 27 c2gh9A_ not modelled 100.0 15 PDB header:sugar binding protein Chain: A: PDB Molecule:maltose/maltodextrin-binding protein; PDBTitle: thermus thermophilus maltotriose binding protein bound with2 maltotriose 28 c2xd3A_ not modelled 100.0 13 PDB header:sugar binding protein Chain: A: PDB Molecule:maltose/maltodextrin-binding protein; PDBTitle: the crystal structure of malx from streptococcus pneumoniae2 in complex with maltopentaose. 29 c3oo6A_ not modelled 100.0 13 PDB header:sugar binding protein Chain: A: PDB Molecule:abc transporter binding protein acbh; PDBTitle: crystal structures and biochemical characterization of the bacterial2 solute receptor acbh reveal an unprecedented exclusive substrate3 preference for b-d-galactopyranose 30 c3uorB_ not modelled 100.0 15 PDB header:sugar binding protein Chain: B: PDB Molecule:abc transporter sugar binding protein; PDBTitle: the structure of the sugar-binding protein male from the phytopathogen2 xanthomonas citri 31 d1eu8a_ not modelled 100.0 15 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 32 c3pu5A_ not modelled 100.0 12 PDB header:transport protein Chain: A: PDB Molecule:extracellular solute-binding protein; PDBTitle: the crystal structure of a putative extracellular solute-binding2 protein from bordetella parapertussis 33 c2fncA_ not modelled 100.0 15 PDB header:sugar binding protein Chain: A: PDB Molecule:maltose abc transporter, periplasmic maltose-binding PDBTitle: thermotoga maritima maltotriose binding protein bound with2 maltotriose. 34 c3iouB_ not modelled 100.0 14 PDB header:signaling protein Chain: B: PDB Molecule:maltose-binding protein, huntingtin fusion PDBTitle: huntingtin amino-terminal region with 17 gln residues -2 crystal c94 35 c1svxB_ not modelled 100.0 14 PDB header:de novo protein/sugar binding protein Chain: B: PDB Molecule:maltose-binding periplasmic protein; PDBTitle: crystal structure of a designed selected ankyrin repeat2 protein in complex with the maltose binding protein 36 d1laxa_ not modelled 100.0 13 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 37 c3rpwA_ not modelled 100.0 17 PDB header:transport protein Chain: A: PDB Molecule:abc transporter; PDBTitle: the crystal structure of an abc transporter from rhodopseudomonas2 palustris cga009 38 c1mh3A_ not modelled 100.0 14 PDB header:sugar binding, dna binding protein Chain: A: PDB Molecule:maltose binding-a1 homeodomain protein chimera; PDBTitle: maltose binding-a1 homeodomain protein chimera, crystal2 form i 39 c2z8fB_ not modelled 100.0 13 PDB header:sugar binding protein Chain: B: PDB Molecule:galacto-n-biose/lacto-n-biose i transporter substrate- PDBTitle: the galacto-n-biose-/lacto-n-biose i-binding protein (gl-bp) of the2 abc transporter from bifidobacterium longum in complex with lacto-n-3 tetraose 40 c3qufB_ not modelled 100.0 13 PDB header:transport protein Chain: B: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: the structure of a family 1 extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis 41 c2b3fD_ not modelled 100.0 11 PDB header:sugar binding protein Chain: D: PDB Molecule:glucose-binding protein; PDBTitle: thermus thermophilus glucose/galactose binding protein2 bound with galactose 42 c2uvgA_ not modelled 100.0 13 PDB header:sugar-binding protein Chain: A: PDB Molecule:abc type periplasmic sugar-binding protein; PDBTitle: structure of a periplasmic oligogalacturonide binding2 protein from yersinia enterocolitica 43 c1ursA_ not modelled 100.0 13 PDB header:maltose-binding protein Chain: A: PDB Molecule:maltose-binding protein; PDBTitle: x-ray structures of the maltose-maltodextrin binding2 protein of the thermoacidophilic bacterium alicyclobacillus3 acidocaldarius 44 d1ursa_ not modelled 100.0 13 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 45 c2w7yA_ not modelled 100.0 13 PDB header:sugar-binding protein Chain: A: PDB Molecule:probable sugar abc transporter, sugar-binding PDBTitle: structure of a streptococcus pneumoniae solute-binding2 protein in complex with the blood group a-trisaccharide. 46 c2i58B_ not modelled 100.0 15 PDB header:sugar binding protein Chain: B: PDB Molecule:sugar abc transporter, sugar-binding protein; PDBTitle: crystal structure of rafe from streptococcus pneumoniae complexed with2 raffinose 47 c3c9hB_ not modelled 100.0 13 PDB header:transport protein Chain: B: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of the substrate binding protein of the abc2 transporter from agrobacterium tumefaciens 48 c2qryD_ not modelled 100.0 14 PDB header:transport protein Chain: D: PDB Molecule:thiamine-binding periplasmic protein; PDBTitle: periplasmic thiamin binding protein 49 d3thia_ not modelled 100.0 13 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 50 c3i3vC_ not modelled 100.0 10 PDB header:transport protein Chain: C: PDB Molecule:probable secreted solute-binding lipoprotein; PDBTitle: crystal structure of probable secreted solute-binding2 lipoprotein from streptomyces coelicolor 51 d1y4ta_ not modelled 100.0 14 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 52 d1q35a_ not modelled 100.0 13 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 53 d1y9ua_ not modelled 100.0 14 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 54 d1j1na_ not modelled 100.0 11 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 55 c2pt1A_ not modelled 100.0 16 PDB header:metal transport Chain: A: PDB Molecule:iron transport protein; PDBTitle: futa1 synechocystis pcc 6803 56 d1y3na1 not modelled 100.0 14 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 57 d1xc1a_ not modelled 100.0 15 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 58 d1xvxa_ not modelled 100.0 17 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 59 d1xvya_ not modelled 100.0 16 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 60 d1nnfa_ not modelled 100.0 16 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 61 c2vozA_ not modelled 100.0 11 PDB header:metal-binding protein Chain: A: PDB Molecule:periplasmic iron-binding protein; PDBTitle: apo futa2 from synechocystis pcc6803 62 c3ombA_ not modelled 100.0 13 PDB header:transport protein Chain: A: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: crystal structure of extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis 63 d2onsa1 not modelled 100.0 9 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 64 c3k6wA_ not modelled 100.0 10 PDB header:transport protein Chain: A: PDB Molecule:solute-binding protein ma_0280; PDBTitle: apo and ligand bound structures of moda from the archaeon2 methanosarcina acetivorans 65 c3cfzA_ not modelled 99.9 10 PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein mj1186; PDBTitle: crystal structure of m. jannaschii periplasmic binding2 protein moda/wtpa with bound tungstate 66 c3cfxA_ not modelled 99.9 10 PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein ma_0280; PDBTitle: crystal structure of m. acetivorans periplasmic binding protein2 moda/wtpa with bound tungstate 67 d1atga_ not modelled 99.9 15 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 68 d1sbpa_ not modelled 99.9 13 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 69 c3cg3A_ not modelled 99.9 9 PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein ph0151; PDBTitle: crystal structure of p. horikoshii periplasmic binding2 protein moda/wtpa with bound tungstate 70 c3cg1A_ not modelled 99.9 7 PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein pf0080; PDBTitle: crystal structure of p. furiosus periplasmic binding protein2 moda/wtpa with bound tungstate 71 d1amfa_ not modelled 99.9 16 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 72 c2h5yC_ not modelled 99.9 16 PDB header:metal transport Chain: C: PDB Molecule:molybdate-binding periplasmic protein; PDBTitle: crystallographic structure of the molybdate-binding protein of2 xanthomonas citri at 1.7 ang resolution bound to molybdate 73 c3fj7A_ not modelled 99.9 13 PDB header:protein binding Chain: A: PDB Molecule:major antigenic peptide peb3; PDBTitle: crystal structure of l-phospholactate bound peb3 74 c3lr1A_ not modelled 99.8 13 PDB header:transport protein Chain: A: PDB Molecule:tungstate abc transporter, periplasmic tungstate- PDBTitle: the crystal structure of the tungstate abc transporter from2 geobacter sulfurreducens 75 c3muqB_ not modelled 99.7 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved functionally unknown protein from2 vibrio parahaemolyticus rimd 2210633 76 c3kn3C_ not modelled 99.6 12 PDB header:transcription Chain: C: PDB Molecule:putative periplasmic protein; PDBTitle: crystal structure of lysr substrate binding domain (25-263) of2 putative periplasmic protein from wolinella succinogenes 77 c1twyG_ not modelled 99.4 10 PDB header:structural genomics, unknown function Chain: G: PDB Molecule:abc transporter, periplasmic substrate-binding protein; PDBTitle: crystal structure of an abc-type phosphate transport receptor from2 vibrio cholerae 78 d1twya_ not modelled 99.4 10 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 79 d1pc3a_ not modelled 98.0 12 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 80 d1ixha_ not modelled 97.5 12 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 81 c3tqwA_ not modelled 97.4 12 PDB header:transport protein Chain: A: PDB Molecule:methionine-binding protein; PDBTitle: structure of a abc transporter, periplasmic substrate-binding protein2 from coxiella burnetii 82 c3k2dA_ not modelled 96.5 10 PDB header:immune system Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus 83 c3ir1F_ not modelled 95.2 11 PDB header:protein binding Chain: F: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of lipoprotein gna1946 from neisseria2 meningitidis 84 c3gxaA_ not modelled 94.4 11 PDB header:protein binding Chain: A: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of gna1946 85 d1xs5a_ not modelled 93.7 9 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 86 c3n5lA_ not modelled 93.3 8 PDB header:transport protein Chain: A: PDB Molecule:binding protein component of abc phosphonate transporter; PDBTitle: crystal structure of a binding protein component of abc phosphonate2 transporter (pa3383) from pseudomonas aeruginosa at 1.97 a resolution 87 c3cvgC_ not modelled 92.9 7 PDB header:metal binding protein Chain: C: PDB Molecule:putative metal binding protein; PDBTitle: crystal structure of a periplasmic putative metal binding protein 88 d1p99a_ not modelled 88.9 14 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 89 c1p99A_ not modelled 88.9 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pg110; PDBTitle: 1.7a crystal structure of protein pg110 from staphylococcus2 aureus 90 c2de4B_ not modelled 88.8 10 PDB header:hydrolase Chain: B: PDB Molecule:dibenzothiophene desulfurization enzyme b; PDBTitle: crystal structure of dszb c27s mutant in complex with biphenyl-2-2 sulfinic acid 91 c2dvzA_ not modelled 84.7 16 PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of a periplasmic transporter 92 c2rejA_ not modelled 83.7 13 PDB header:choline-binding protein Chain: A: PDB Molecule:putative glycine betaine abc transporter protein; PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation 93 c3hn0A_ not modelled 79.1 16 PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of an abc transporter (bdi_1369) from2 parabacteroides distasonis at 1.75 a resolution 94 c3un6A_ not modelled 74.4 7 PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein saouhsc_00137; PDBTitle: 2.0 angstrom crystal structure of ligand binding component of abc-type2 import system from staphylococcus aureus with zinc bound 95 c3l6gA_ not modelled 69.6 16 PDB header:glycine betaine-binding protein Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation 96 c3ix1A_ not modelled 68.0 14 PDB header:biosynthetic protein Chain: A: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans 97 c2x26A_ not modelled 64.7 13 PDB header:transport protein Chain: A: PDB Molecule:periplasmic aliphatic sulphonates-binding protein; PDBTitle: crystal structure of the periplasmic aliphatic sulphonate2 binding protein ssua from escherichia coli 98 c3ix1B_ not modelled 64.4 14 PDB header:biosynthetic protein Chain: B: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans 99 c3e4rA_ not modelled 64.2 13 PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of the alkanesulfonate binding protein2 (ssua) from the phytopathogenic bacteria xanthomonas3 axonopodis pv. citri bound to hepes 100 c3uifA_ not modelled 63.7 11 PDB header:transport protein Chain: A: PDB Molecule:sulfonate abc transporter, periplasmic sulfonate-binding PDBTitle: crystal structure of putative sulfonate abc transporter, periplasmic2 sulfonate-binding protein ssua from methylobacillus flagellatus kt 101 c2f78A_ not modelled 61.6 7 PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: benm effector binding domain with its effector benzoate 102 c2h9bB_ not modelled 54.6 7 PDB header:transcription Chain: B: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: crystal structure of the effector binding domain of a benm variant2 (benm r156h/t157s) 103 c2qpqC_ not modelled 52.3 14 PDB header:transport protein Chain: C: PDB Molecule:protein bug27; PDBTitle: structure of bug27 from bordetella pertussis 104 d2fyia1 not modelled 49.9 17 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 105 c3ho7A_ not modelled 49.6 19 PDB header:transcription Chain: A: PDB Molecule:oxyr; PDBTitle: crystal structure of oxyr from porphyromonas gingivalis 106 c2f7cA_ not modelled 49.1 11 PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator catm; PDBTitle: catm effector binding domain with its effector cis,cis-muconate 107 c3qslA_ not modelled 48.6 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of cae31940 from bordetella bronchiseptica rb50 108 d2v3qa1 not modelled 48.3 4 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 109 c3n6uA_ not modelled 46.6 18 PDB header:transcription regulator Chain: A: PDB Molecule:lysr type regulator of tsambcd; PDBTitle: effector binding domain of tsar in complex with its inducer p-2 toluenesulfonate 110 c2h9qC_ not modelled 46.2 11 PDB header:transcription Chain: C: PDB Molecule:hth-type transcriptional regulator catm; PDBTitle: crystal structure of the effector binding domain of a catm2 variant (r156h) 111 c3jv9B_ not modelled 46.2 7 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: the structure of a reduced form of oxyr from n. meningitidis 112 c2ql3G_ not modelled 43.7 14 PDB header:transcription Chain: G: PDB Molecule:probable transcriptional regulator, lysr family protein; PDBTitle: crystal structure of the c-terminal domain of a probable lysr family2 transcriptional regulator from rhodococcus sp. rha1 113 c3tmgA_ not modelled 40.3 11 PDB header:transport protein Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter, PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi 114 d1i6aa_ not modelled 38.9 14 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 115 c2x7pA_ not modelled 38.2 14 PDB header:unknown function Chain: A: PDB Molecule:possible thiamine biosynthesis enzyme; PDBTitle: the conserved candida albicans ca3427 gene product defines a new2 family of proteins exhibiting the generic periplasmic binding3 protein structural fold 116 d1ixca2 not modelled 34.2 18 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 117 c3b50A_ not modelled 33.7 9 PDB header:transport protein Chain: A: PDB Molecule:sialic acid-binding periplasmic protein siap; PDBTitle: structure of h. influenzae sialic acid binding protein2 bound to neu5ac. 118 c2f5xC_ not modelled 30.6 11 PDB header:transport protein Chain: C: PDB Molecule:bugd; PDBTitle: structure of periplasmic binding protein bugd 119 c2yuiA_ not modelled 30.4 11 PDB header:apoptosis Chain: A: PDB Molecule:anamorsin; PDBTitle: solution structure of the n-terminal domain in human2 cytokine-induced apoptosis inhibitor anamorsin 120 c1jrjA_ not modelled 27.7 8 PDB header:hormone/growth factor Chain: A: PDB Molecule:exendin-4; PDBTitle: solution structure of exendin-4 in 30-vol% trifluoroethanol

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0