BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (145 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0ADJ8 Inner membrane protein yiaA n=60 Tax=Enterobacte... 294 5e-79 UniRef50_Q3JFC6 YiaA/B two helix domain family n=99 Tax=Bacteria... 160 1e-38 UniRef50_D0J5W3 YiaAB two helix n=3 Tax=Bacteria RepID=D0J5W3_COMTE 154 6e-37 UniRef50_A3YER8 Putative uncharacterized protein n=1 Tax=Marinom... 151 6e-36 UniRef50_Q5E8X9 Conserved inner membrane protein n=1 Tax=Vibrio ... 147 9e-35 UniRef50_A6CKE1 Putative uncharacterized protein n=1 Tax=Bacillu... 145 4e-34 UniRef50_B1HSE2 Inner membrane protein n=9 Tax=Bacteria RepID=B1... 141 5e-33 UniRef50_D0SI16 YiaAB two helix domain-containing protein n=1 Ta... 136 2e-31 UniRef50_Q15PS0 YiaAB two helix n=1 Tax=Pseudoalteromonas atlant... 135 5e-31 UniRef50_C9YB60 Inner membrane protein yiaA n=1 Tax=Curvibacter ... 120 1e-26 UniRef50_C1RFL4 Predicted membrane protein, COG4682 n=1 Tax=Cell... 118 5e-26 UniRef50_D2TJU2 Putative membrane protein n=1 Tax=Citrobacter ro... 52 4e-06 UniRef50_O32082 Uncharacterized membrane protein yubF n=3 Tax=Ba... 49 6e-05 UniRef50_P11286 Inner membrane protein yiaB n=59 Tax=Enterobacte... 47 2e-04 UniRef50_D0YEB1 YiaAB two helix domain protein n=5 Tax=Klebsiell... 45 6e-04 UniRef50_C0Z6A4 Putative uncharacterized protein n=1 Tax=Breviba... 45 6e-04 UniRef50_B5FLD3 YiaA/B two helix domain protein n=31 Tax=Enterob... 45 0.001 >UniRef50_P0ADJ8 Inner membrane protein yiaA n=60 Tax=Enterobacteriaceae RepID=YIAA_ECOLI Length = 145 Score = 294 bits (753), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 145/145 (100%), Positives = 145/145 (100%) Query: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK 60 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK Sbjct: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK 60 Query: 61 TVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVA 120 TVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVA Sbjct: 61 TVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVA 120 Query: 121 VQKNIRDAGINPPKETQVTQEEYSE 145 VQKNIRDAGINPPKETQVTQEEYSE Sbjct: 121 VQKNIRDAGINPPKETQVTQEEYSE 145 >UniRef50_Q3JFC6 YiaA/B two helix domain family n=99 Tax=Bacteria RepID=Q3JFC6_BURP1 Length = 356 Score = 160 bits (405), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 74/117 (63%), Positives = 91/117 (77%) Query: 11 AFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIP 70 AF SW AL+ G+ YLLGLWNA MQLNEKGYYF VL GLF+A S QK+VRD+ EG+P Sbjct: 221 AFVAASWAALLAGVCAYLLGLWNAGMQLNEKGYYFTVLAYGLFAAVSLQKSVRDRLEGVP 280 Query: 71 TTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRD 127 T +YY I+++ALL++GL+NATLLLSEKGFY ++F L+LFG+VAVQKN RD Sbjct: 281 VTGLYYGLAWASVILTIALLVIGLFNATLLLSEKGFYAMSFALALFGSVAVQKNTRD 337 Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 70 PTTSIYYMTCL-TVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRD 127 P+TS ++ + V ++GLWNA + L+EKG+Y LF AV++QK++RD Sbjct: 216 PSTSFAFVAASWAALLAGVCAYLLGLWNAGMQLNEKGYYFTVLAYGLFAAVSLQKSVRD 274 >UniRef50_D0J5W3 YiaAB two helix n=3 Tax=Bacteria RepID=D0J5W3_COMTE Length = 187 Score = 154 bits (390), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 78/126 (61%), Positives = 95/126 (75%), Gaps = 2/126 (1%) Query: 5 ISTYSP--AFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTV 62 ++++ P AF SW AL+ G+V ++ GLWNA MQLNEKG+YFAVLVLGL+SA S QKTV Sbjct: 21 VTSHKPSTAFVGASWAALLLGVVAFMAGLWNAAMQLNEKGFYFAVLVLGLYSAISLQKTV 80 Query: 63 RDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQ 122 RDK EG+ T IYY II+V LL GL+NATL LSEKGFY +AF L+LFGA+AVQ Sbjct: 81 RDKLEGVAVTGIYYGISWVALIIAVLLLGTGLFNATLQLSEKGFYAMAFALALFGAIAVQ 140 Query: 123 KNIRDA 128 KN RD+ Sbjct: 141 KNTRDS 146 >UniRef50_A3YER8 Putative uncharacterized protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YER8_9GAMM Length = 188 Score = 151 bits (382), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 75/150 (50%), Positives = 99/150 (66%), Gaps = 8/150 (5%) Query: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK 60 + N++S +PA+ +W AL G+ YLLGLWNA++ LNEKGYYFA+ +L LFS+ + QK Sbjct: 35 ISNQVSRPTPAYLSATWAALAIGVCGYLLGLWNADIMLNEKGYYFAIFILALFSSVTLQK 94 Query: 61 TVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVA 120 TVRDK EG+P T ++ C F S+ALL +GL+NA + LSEKGFY +AF LSLF V Sbjct: 95 TVRDKQEGLPATKVFVGMCWAAFFSSIALLGIGLFNAEMALSEKGFYVMAFILSLFSIVT 154 Query: 121 VQKNIRD--------AGINPPKETQVTQEE 142 VQKN+RD +GIN T + E Sbjct: 155 VQKNVRDLGNKVEISSGINQVTNTPIEANE 184 >UniRef50_Q5E8X9 Conserved inner membrane protein n=1 Tax=Vibrio fischeri ES114 RepID=Q5E8X9_VIBF1 Length = 148 Score = 147 bits (371), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 72/137 (52%), Positives = 92/137 (67%), Gaps = 2/137 (1%) Query: 1 MDNKISTYSP--AFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASY 58 M+ Y P AF + SW A V G YL GLW + M+LNEKGYYF++L+LGLF+A S Sbjct: 1 MEQHHQYYQPTSAFIMASWGAFVIGSSAYLFGLWKSTMELNEKGYYFSLLLLGLFAAISL 60 Query: 59 QKTVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGA 118 QKT+RDK+EGI TS+Y M+C I ++ L+ +GL NA LLLSEKGF+ +A+ LSLF Sbjct: 61 QKTIRDKHEGINVTSMYMMSCRVALISALVLMAIGLRNAELLLSEKGFFAMAYTLSLFSV 120 Query: 119 VAVQKNIRDAGINPPKE 135 V +QKNIRD E Sbjct: 121 VTIQKNIRDVAATTSDE 137 >UniRef50_A6CKE1 Putative uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CKE1_9BACI Length = 171 Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 73/143 (51%), Positives = 99/143 (69%), Gaps = 9/143 (6%) Query: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK 60 ++ K + AF SW AL+ G+ YL+GL+NA M+LNEKGYYFAVLV GL++A S QK Sbjct: 36 VERKEGEPTAAFKGASWAALIAGVSAYLIGLFNAGMELNEKGYYFAVLVFGLYAAVSLQK 95 Query: 61 TVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNA-TLLLSEKGFYGLAFFLSLFGAV 119 VRDK E IP + IYY I+S++L+ +GL+NA +++LSEKGFYG++F LSLF A+ Sbjct: 96 AVRDKEEDIPVSGIYYGISWFAVIVSISLMAIGLYNAGSIILSEKGFYGMSFVLSLFAAI 155 Query: 120 AVQKNIRDAGINPPKETQVTQEE 142 +QKNIRD TQ+ +E Sbjct: 156 TIQKNIRD--------TQLARER 170 >UniRef50_B1HSE2 Inner membrane protein n=9 Tax=Bacteria RepID=B1HSE2_LYSSC Length = 169 Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 69/120 (57%), Positives = 90/120 (75%), Gaps = 1/120 (0%) Query: 9 SPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEG 68 + AF SW AL+ G+ Y +GL+NA M LNE GYY AVLVLGL+SA S QK+VRDK EG Sbjct: 42 TAAFKGASWAALLVGVTAYFIGLFNATMPLNETGYYLAVLVLGLYSAVSLQKSVRDKDEG 101 Query: 69 IPTTSIYYMTCLTVFIISVALLMVGLWNA-TLLLSEKGFYGLAFFLSLFGAVAVQKNIRD 127 IP T++YY I+S+ L+ +GL+NA +++LSEKGFYG++F LSLF ++ VQKNIRD Sbjct: 102 IPVTNMYYGISWIALIVSILLMAIGLYNAESIVLSEKGFYGMSFVLSLFASITVQKNIRD 161 >UniRef50_D0SI16 YiaAB two helix domain-containing protein n=1 Tax=Acinetobacter junii SH205 RepID=D0SI16_ACIJU Length = 152 Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 70/127 (55%), Positives = 88/127 (69%) Query: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK 60 M N I+ + AF SW+A+V G V +++GLWNA M L+EKG+Y +L+ GLFSA S QK Sbjct: 1 MSNLINRPTLAFIGASWLAVVIGAVGFMIGLWNASMPLHEKGFYLVILLYGLFSAVSLQK 60 Query: 61 TVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVA 120 T+RDK E IP T+IY C T I + LL+ L NATL LSEKG+Y ++F LSLFG A Sbjct: 61 TLRDKLEDIPVTAIYVALCWTSVGICIGLLLFSLSNATLSLSEKGYYIMSFLLSLFGVTA 120 Query: 121 VQKNIRD 127 QKNIRD Sbjct: 121 TQKNIRD 127 >UniRef50_Q15PS0 YiaAB two helix n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15PS0_PSEA6 Length = 147 Score = 135 bits (339), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 68/140 (48%), Positives = 94/140 (67%) Query: 5 ISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRD 64 I + ++++ S AL+ G V Y +GL+NA+M LNEKGYY +++ GLFS S QKT+RD Sbjct: 3 IQAPTKSYTLASLAALLIGTVAYSIGLFNAQMALNEKGYYLIIMLYGLFSMVSLQKTIRD 62 Query: 65 KYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKN 124 K EGI T+S+Y ++ALL +GL+NA L LSEKGFY +A+ LSLF AV VQKN Sbjct: 63 KAEGIKTSSMYQTLSWASSGFAIALLAIGLYNAELALSEKGFYAMAYVLSLFAAVTVQKN 122 Query: 125 IRDAGINPPKETQVTQEEYS 144 +RD K+ +V Q E++ Sbjct: 123 VRDKDALAGKQEEVQQAEFA 142 >UniRef50_C9YB60 Inner membrane protein yiaA n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YB60_9BURK Length = 174 Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 61/96 (63%), Positives = 72/96 (75%) Query: 32 WNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIPTTSIYYMTCLTVFIISVALLM 91 WNAEMQLNEKGYYF +L GLF+A S QK VRDK EGIP + YY C +S+ LL Sbjct: 65 WNAEMQLNEKGYYFTLLAFGLFAAVSLQKCVRDKLEGIPVSGAYYGICYLAVGLSLLLLG 124 Query: 92 VGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRD 127 GLWNATLLLSEKG+Y ++F L+L+ AV VQKN+RD Sbjct: 125 TGLWNATLLLSEKGYYAMSFVLALYSAVTVQKNVRD 160 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 20/34 (58%), Positives = 24/34 (70%) Query: 32 WNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDK 65 WNA + L+EKGYY VL L+SA + QK VRDK Sbjct: 128 WNATLLLSEKGYYAMSFVLALYSAVTVQKNVRDK 161 >UniRef50_C1RFL4 Predicted membrane protein, COG4682 n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RFL4_9CELL Length = 157 Score = 118 bits (296), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 61/119 (51%), Positives = 88/119 (73%) Query: 9 SPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEG 68 + AF SW+ALV I + +GLWNA+M L+EKG+Y +L+LGL+SA + QK+VRD+ EG Sbjct: 11 TAAFVGASWVALVIAITAFAVGLWNADMLLSEKGFYGTLLLLGLYSAIALQKSVRDRAEG 70 Query: 69 IPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRD 127 IP T I+ ++ ++S+ L+ +GL N+TL LSEKGFYGL + ++LF +AVQKN+RD Sbjct: 71 IPVTGIFLGLSWSMVLVSLLLVAIGLANSTLTLSEKGFYGLGYTMALFAVIAVQKNVRD 129 >UniRef50_D2TJU2 Putative membrane protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TJU2_CITRO Length = 120 Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 4/112 (3%) Query: 13 SIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIPTT 72 + +SW+ L G +TY++G W A L+ KGY+ V + F A Y +R+ G Sbjct: 5 TFISWLLLFSGTLTYVIGFWRACPLLSGKGYFLGVFITVWFVAWVY---LREVMRG-EID 60 Query: 73 SIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKN 124 + C + ++ LL+VG+ NA L E+ Y +A +SL G V V + Sbjct: 61 ERFISVCKLMALVMTGLLLVGVINAPLTPGERVLYPVALCVSLLGLVRVIRT 112 >UniRef50_O32082 Uncharacterized membrane protein yubF n=3 Tax=Bacillus RepID=YUBF_BACSU Length = 87 Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%) Query: 11 AFSIVSWIALVGGIVTYLLGLWNAE-MQLNEKGYYFAVLVLGLFSAASYQKTVRDKYE 67 AF+++++ G+ + +GL+NA+ ++LNEKGYY AV++L A QK RD E Sbjct: 11 AFTVLAYFTFFAGVFLFSIGLYNADNLELNEKGYYIAVMILVAVGAILTQKVTRDNAE 68 >UniRef50_P11286 Inner membrane protein yiaB n=59 Tax=Enterobacteriaceae RepID=YIAB_ECOLI Length = 113 Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 4/110 (3%) Query: 15 VSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIPTTSI 74 V+ + V G + YL+GLW + L+ KGY+ VL+ F +Y +R + G Sbjct: 7 VAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG-QLDDF 62 Query: 75 YYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKN 124 + C V +I++ LL +G+ NA + E Y +AFF+ LFG + + ++ Sbjct: 63 FTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 >UniRef50_D0YEB1 YiaAB two helix domain protein n=5 Tax=Klebsiella RepID=D0YEB1_KLEVA Length = 123 Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 8/113 (7%) Query: 18 IALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTV--RDKYEGIPTTSIY 75 + + G + YLLG+W + KGY+ VLV+G+F+ ++Q+ +++ +G + Sbjct: 10 VMMAAGSLVYLLGIWRTCPLFSGKGYFLGVLVMGMFAVLAHQRASQWQEQDDG------F 63 Query: 76 YMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDA 128 C V ++SV LL+VG W EK Y A+F+ L+GA A + R A Sbjct: 64 IALCRLVLLLSVGLLLVGAWYVPADWHEKAVYIAAWFVCLYGASATPERTRVA 116 >UniRef50_C0Z6A4 Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z6A4_BREBN Length = 95 Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%) Query: 11 AFSIVSWIALVGGIVTYLLGLWNAE-MQLNEKGYYFAVLVLGLFSAASYQKTVRDKYE 67 AF+ +++ L G++ + +GL+NA +QL+EKGYY A ++L + QK VRD E Sbjct: 13 AFTFLAYFTLGAGVLLFSIGLYNATGLQLHEKGYYIACMLLVAVGSILTQKVVRDNAE 70 >UniRef50_B5FLD3 YiaA/B two helix domain protein n=31 Tax=Enterobacteriaceae RepID=B5FLD3_SALDC Length = 117 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 11/117 (9%) Query: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK 60 MD+ ++ F + LV G V YL+GLW L+EKGY+FA +V+ + Sbjct: 1 MDDHVARRKRIFGLG---MLVVGAVVYLVGLWPGCHTLSEKGYFFAAIVM-----CGFPV 52 Query: 61 TVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFG 117 +R ++ G C ++ ++ + ++ VG++N L + K +A +S++G Sbjct: 53 LIRQEHTG---NGRLLSRCKSLLLLGIGMVAVGVFNLALAGALKILCLVALGVSIYG 106 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ADJ8 Inner membrane protein yiaA n=60 Tax=Enterobacte... 187 7e-47 UniRef50_Q3JFC6 YiaA/B two helix domain family n=99 Tax=Bacteria... 178 5e-44 UniRef50_A3YER8 Putative uncharacterized protein n=1 Tax=Marinom... 176 2e-43 UniRef50_B1HSE2 Inner membrane protein n=9 Tax=Bacteria RepID=B1... 165 3e-40 UniRef50_A6CKE1 Putative uncharacterized protein n=1 Tax=Bacillu... 164 9e-40 UniRef50_D0SI16 YiaAB two helix domain-containing protein n=1 Ta... 161 6e-39 UniRef50_D0J5W3 YiaAB two helix n=3 Tax=Bacteria RepID=D0J5W3_COMTE 159 2e-38 UniRef50_Q5E8X9 Conserved inner membrane protein n=1 Tax=Vibrio ... 156 2e-37 UniRef50_Q15PS0 YiaAB two helix n=1 Tax=Pseudoalteromonas atlant... 154 8e-37 UniRef50_C1RFL4 Predicted membrane protein, COG4682 n=1 Tax=Cell... 140 1e-32 UniRef50_C9YB60 Inner membrane protein yiaA n=1 Tax=Curvibacter ... 120 1e-26 UniRef50_D2TJU2 Putative membrane protein n=1 Tax=Citrobacter ro... 114 1e-24 UniRef50_B5FLD3 YiaA/B two helix domain protein n=31 Tax=Enterob... 105 3e-22 UniRef50_P11286 Inner membrane protein yiaB n=59 Tax=Enterobacte... 103 2e-21 UniRef50_D0YEB1 YiaAB two helix domain protein n=5 Tax=Klebsiell... 102 5e-21 UniRef50_O32082 Uncharacterized membrane protein yubF n=3 Tax=Ba... 69 4e-11 UniRef50_C0Z6A4 Putative uncharacterized protein n=1 Tax=Breviba... 69 6e-11 Sequences not found previously or not previously below threshold: UniRef50_B2U561 YiaA/B two helix domain family protein n=1 Tax=S... 60 2e-08 UniRef50_A7GKK1 YiaAB two helix domain protein n=63 Tax=Bacillus... 52 5e-06 UniRef50_B1Y040 YiaAB two helix domain protein n=3 Tax=Burkholde... 47 2e-04 UniRef50_A1TVN9 YiaAB two helix domain protein n=6 Tax=Comamonad... 47 3e-04 UniRef50_Q033D1 Predicted membrane protein n=2 Tax=Lactococcus l... 44 0.001 UniRef50_C2LQV3 YiaA/B two helix domain protein n=3 Tax=Bacilli ... 40 0.020 UniRef50_A1VJ08 YiaAB two helix domain protein n=1 Tax=Polaromon... 40 0.021 UniRef50_B0CCP2 YiaA/B two helix domain protein, putative n=3 Ta... 39 0.063 >UniRef50_P0ADJ8 Inner membrane protein yiaA n=60 Tax=Enterobacteriaceae RepID=YIAA_ECOLI Length = 145 Score = 187 bits (476), Expect = 7e-47, Method: Composition-based stats. Identities = 145/145 (100%), Positives = 145/145 (100%) Query: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK 60 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK Sbjct: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK 60 Query: 61 TVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVA 120 TVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVA Sbjct: 61 TVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVA 120 Query: 121 VQKNIRDAGINPPKETQVTQEEYSE 145 VQKNIRDAGINPPKETQVTQEEYSE Sbjct: 121 VQKNIRDAGINPPKETQVTQEEYSE 145 >UniRef50_Q3JFC6 YiaA/B two helix domain family n=99 Tax=Bacteria RepID=Q3JFC6_BURP1 Length = 356 Score = 178 bits (451), Expect = 5e-44, Method: Composition-based stats. Identities = 79/140 (56%), Positives = 99/140 (70%), Gaps = 2/140 (1%) Query: 2 DNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKT 61 + + S AF SW AL+ G+ YLLGLWNA MQLNEKGYYF VL GLF+A S QK+ Sbjct: 212 NQLHPSTSFAFVAASWAALLAGVCAYLLGLWNAGMQLNEKGYYFTVLAYGLFAAVSLQKS 271 Query: 62 VRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAV 121 VRD+ EG+P T +YY I+++ALL++GL+NATLLLSEKGFY ++F L+LFG+VAV Sbjct: 272 VRDRLEGVPVTGLYYGLAWASVILTIALLVIGLFNATLLLSEKGFYAMSFALALFGSVAV 331 Query: 122 QKNIRD--AGINPPKETQVT 139 QKN RD A ET+V Sbjct: 332 QKNTRDLKAAGRGRAETEVA 351 >UniRef50_A3YER8 Putative uncharacterized protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YER8_9GAMM Length = 188 Score = 176 bits (447), Expect = 2e-43, Method: Composition-based stats. Identities = 75/150 (50%), Positives = 99/150 (66%), Gaps = 8/150 (5%) Query: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK 60 + N++S +PA+ +W AL G+ YLLGLWNA++ LNEKGYYFA+ +L LFS+ + QK Sbjct: 35 ISNQVSRPTPAYLSATWAALAIGVCGYLLGLWNADIMLNEKGYYFAIFILALFSSVTLQK 94 Query: 61 TVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVA 120 TVRDK EG+P T ++ C F S+ALL +GL+NA + LSEKGFY +AF LSLF V Sbjct: 95 TVRDKQEGLPATKVFVGMCWAAFFSSIALLGIGLFNAEMALSEKGFYVMAFILSLFSIVT 154 Query: 121 VQKNIRD--------AGINPPKETQVTQEE 142 VQKN+RD +GIN T + E Sbjct: 155 VQKNVRDLGNKVEISSGINQVTNTPIEANE 184 >UniRef50_B1HSE2 Inner membrane protein n=9 Tax=Bacteria RepID=B1HSE2_LYSSC Length = 169 Score = 165 bits (418), Expect = 3e-40, Method: Composition-based stats. Identities = 69/129 (53%), Positives = 92/129 (71%), Gaps = 1/129 (0%) Query: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK 60 ++ + + AF SW AL+ G+ Y +GL+NA M LNE GYY AVLVLGL+SA S QK Sbjct: 34 VERQEGEPTAAFKGASWAALLVGVTAYFIGLFNATMPLNETGYYLAVLVLGLYSAVSLQK 93 Query: 61 TVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNAT-LLLSEKGFYGLAFFLSLFGAV 119 +VRDK EGIP T++YY I+S+ L+ +GL+NA ++LSEKGFYG++F LSLF ++ Sbjct: 94 SVRDKDEGIPVTNMYYGISWIALIVSILLMAIGLYNAESIVLSEKGFYGMSFVLSLFASI 153 Query: 120 AVQKNIRDA 128 VQKNIRD Sbjct: 154 TVQKNIRDT 162 Score = 58.5 bits (140), Expect = 6e-08, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%) Query: 59 QKTVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGA 118 K ++ EG P T+ + ++ V +GL+NAT+ L+E G+Y L L+ A Sbjct: 30 PKIKVERQEGEP-TAAFKGASWAALLVGVTAYFIGLFNATMPLNETGYYLAVLVLGLYSA 88 Query: 119 VAVQKNIRDAG 129 V++QK++RD Sbjct: 89 VSLQKSVRDKD 99 Score = 50.8 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 1/60 (1%) Query: 9 SPAFSIVSWIALVGGIVTYLLGLWNAE-MQLNEKGYYFAVLVLGLFSAASYQKTVRDKYE 67 + + +SWIAL+ I+ +GL+NAE + L+EKG+Y VL LF++ + QK +RD Sbjct: 105 TNMYYGISWIALIVSILLMAIGLYNAESIVLSEKGFYGMSFVLSLFASITVQKNIRDTQR 164 >UniRef50_A6CKE1 Putative uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CKE1_9BACI Length = 171 Score = 164 bits (415), Expect = 9e-40, Method: Composition-based stats. Identities = 73/143 (51%), Positives = 99/143 (69%), Gaps = 9/143 (6%) Query: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK 60 ++ K + AF SW AL+ G+ YL+GL+NA M+LNEKGYYFAVLV GL++A S QK Sbjct: 36 VERKEGEPTAAFKGASWAALIAGVSAYLIGLFNAGMELNEKGYYFAVLVFGLYAAVSLQK 95 Query: 61 TVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNA-TLLLSEKGFYGLAFFLSLFGAV 119 VRDK E IP + IYY I+S++L+ +GL+NA +++LSEKGFYG++F LSLF A+ Sbjct: 96 AVRDKEEDIPVSGIYYGISWFAVIVSISLMAIGLYNAGSIILSEKGFYGMSFVLSLFAAI 155 Query: 120 AVQKNIRDAGINPPKETQVTQEE 142 +QKNIRD TQ+ +E Sbjct: 156 TIQKNIRD--------TQLARER 170 >UniRef50_D0SI16 YiaAB two helix domain-containing protein n=1 Tax=Acinetobacter junii SH205 RepID=D0SI16_ACIJU Length = 152 Score = 161 bits (407), Expect = 6e-39, Method: Composition-based stats. Identities = 70/127 (55%), Positives = 88/127 (69%) Query: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK 60 M N I+ + AF SW+A+V G V +++GLWNA M L+EKG+Y +L+ GLFSA S QK Sbjct: 1 MSNLINRPTLAFIGASWLAVVIGAVGFMIGLWNASMPLHEKGFYLVILLYGLFSAVSLQK 60 Query: 61 TVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVA 120 T+RDK E IP T+IY C T I + LL+ L NATL LSEKG+Y ++F LSLFG A Sbjct: 61 TLRDKLEDIPVTAIYVALCWTSVGICIGLLLFSLSNATLSLSEKGYYIMSFLLSLFGVTA 120 Query: 121 VQKNIRD 127 QKNIRD Sbjct: 121 TQKNIRD 127 Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 30/54 (55%) Query: 75 YYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDA 128 + +I M+GLWNA++ L EKGFY + LF AV++QK +RD Sbjct: 12 FIGASWLAVVIGAVGFMIGLWNASMPLHEKGFYLVILLYGLFSAVSLQKTLRDK 65 >UniRef50_D0J5W3 YiaAB two helix n=3 Tax=Bacteria RepID=D0J5W3_COMTE Length = 187 Score = 159 bits (403), Expect = 2e-38, Method: Composition-based stats. Identities = 78/122 (63%), Positives = 91/122 (74%) Query: 7 TYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKY 66 S AF SW AL+ G+V ++ GLWNA MQLNEKG+YFAVLVLGL+SA S QKTVRDK Sbjct: 25 KPSTAFVGASWAALLLGVVAFMAGLWNAAMQLNEKGFYFAVLVLGLYSAISLQKTVRDKL 84 Query: 67 EGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIR 126 EG+ T IYY II+V LL GL+NATL LSEKGFY +AF L+LFGA+AVQKN R Sbjct: 85 EGVAVTGIYYGISWVALIIAVLLLGTGLFNATLQLSEKGFYAMAFALALFGAIAVQKNTR 144 Query: 127 DA 128 D+ Sbjct: 145 DS 146 >UniRef50_Q5E8X9 Conserved inner membrane protein n=1 Tax=Vibrio fischeri ES114 RepID=Q5E8X9_VIBF1 Length = 148 Score = 156 bits (394), Expect = 2e-37, Method: Composition-based stats. Identities = 72/137 (52%), Positives = 92/137 (67%), Gaps = 2/137 (1%) Query: 1 MDNKISTYSP--AFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASY 58 M+ Y P AF + SW A V G YL GLW + M+LNEKGYYF++L+LGLF+A S Sbjct: 1 MEQHHQYYQPTSAFIMASWGAFVIGSSAYLFGLWKSTMELNEKGYYFSLLLLGLFAAISL 60 Query: 59 QKTVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGA 118 QKT+RDK+EGI TS+Y M+C I ++ L+ +GL NA LLLSEKGF+ +A+ LSLF Sbjct: 61 QKTIRDKHEGINVTSMYMMSCRVALISALVLMAIGLRNAELLLSEKGFFAMAYTLSLFSV 120 Query: 119 VAVQKNIRDAGINPPKE 135 V +QKNIRD E Sbjct: 121 VTIQKNIRDVAATTSDE 137 >UniRef50_Q15PS0 YiaAB two helix n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15PS0_PSEA6 Length = 147 Score = 154 bits (389), Expect = 8e-37, Method: Composition-based stats. Identities = 68/140 (48%), Positives = 94/140 (67%) Query: 5 ISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRD 64 I + ++++ S AL+ G V Y +GL+NA+M LNEKGYY +++ GLFS S QKT+RD Sbjct: 3 IQAPTKSYTLASLAALLIGTVAYSIGLFNAQMALNEKGYYLIIMLYGLFSMVSLQKTIRD 62 Query: 65 KYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKN 124 K EGI T+S+Y ++ALL +GL+NA L LSEKGFY +A+ LSLF AV VQKN Sbjct: 63 KAEGIKTSSMYQTLSWASSGFAIALLAIGLYNAELALSEKGFYAMAYVLSLFAAVTVQKN 122 Query: 125 IRDAGINPPKETQVTQEEYS 144 +RD K+ +V Q E++ Sbjct: 123 VRDKDALAGKQEEVQQAEFA 142 >UniRef50_C1RFL4 Predicted membrane protein, COG4682 n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RFL4_9CELL Length = 157 Score = 140 bits (352), Expect = 1e-32, Method: Composition-based stats. Identities = 61/122 (50%), Positives = 89/122 (72%) Query: 6 STYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDK 65 + + AF SW+ALV I + +GLWNA+M L+EKG+Y +L+LGL+SA + QK+VRD+ Sbjct: 8 ARPTAAFVGASWVALVIAITAFAVGLWNADMLLSEKGFYGTLLLLGLYSAIALQKSVRDR 67 Query: 66 YEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNI 125 EGIP T I+ ++ ++S+ L+ +GL N+TL LSEKGFYGL + ++LF +AVQKN+ Sbjct: 68 AEGIPVTGIFLGLSWSMVLVSLLLVAIGLANSTLTLSEKGFYGLGYTMALFAVIAVQKNV 127 Query: 126 RD 127 RD Sbjct: 128 RD 129 >UniRef50_C9YB60 Inner membrane protein yiaA n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YB60_9BURK Length = 174 Score = 120 bits (301), Expect = 1e-26, Method: Composition-based stats. Identities = 69/125 (55%), Positives = 85/125 (68%) Query: 6 STYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDK 65 + S A+ ++ L G +LLGLWNAEMQLNEKGYYF +L GLF+A S QK VRDK Sbjct: 39 QSSSGAYVGATFACLGLGTGGFLLGLWNAEMQLNEKGYYFTLLAFGLFAAVSLQKCVRDK 98 Query: 66 YEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNI 125 EGIP + YY C +S+ LL GLWNATLLLSEKG+Y ++F L+L+ AV VQKN+ Sbjct: 99 LEGIPVSGAYYGICYLAVGLSLLLLGTGLWNATLLLSEKGYYAMSFVLALYSAVTVQKNV 158 Query: 126 RDAGI 130 RD Sbjct: 159 RDKKA 163 >UniRef50_D2TJU2 Putative membrane protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TJU2_CITRO Length = 120 Score = 114 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 4/112 (3%) Query: 13 SIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIPTT 72 + +SW+ L G +TY++G W A L+ KGY+ V + F A Y +R+ G Sbjct: 5 TFISWLLLFSGTLTYVIGFWRACPLLSGKGYFLGVFITVWFVAWVY---LREVMRG-EID 60 Query: 73 SIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKN 124 + C + ++ LL+VG+ NA L E+ Y +A +SL G V V + Sbjct: 61 ERFISVCKLMALVMTGLLLVGVINAPLTPGERVLYPVALCVSLLGLVRVIRT 112 >UniRef50_B5FLD3 YiaA/B two helix domain protein n=31 Tax=Enterobacteriaceae RepID=B5FLD3_SALDC Length = 117 Score = 105 bits (263), Expect = 3e-22, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 11/117 (9%) Query: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK 60 MD+ ++ F + LV G V YL+GLW L+EKGY+FA +V+ + Sbjct: 1 MDDHVARRKRIFGLG---MLVVGAVVYLVGLWPGCHTLSEKGYFFAAIVM-----CGFPV 52 Query: 61 TVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFG 117 +R ++ G C ++ ++ + ++ VG++N L + K +A +S++G Sbjct: 53 LIRQEHTG---NGRLLSRCKSLLLLGIGMVAVGVFNLALAGALKILCLVALGVSIYG 106 >UniRef50_P11286 Inner membrane protein yiaB n=59 Tax=Enterobacteriaceae RepID=YIAB_ECOLI Length = 113 Score = 103 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 4/110 (3%) Query: 15 VSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIPTTSI 74 V+ + V G + YL+GLW + L+ KGY+ VL+ F +Y +R + G Sbjct: 7 VAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG-QLDDF 62 Query: 75 YYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKN 124 + C V +I++ LL +G+ NA + E Y +AFF+ LFG + + ++ Sbjct: 63 FTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 >UniRef50_D0YEB1 YiaAB two helix domain protein n=5 Tax=Klebsiella RepID=D0YEB1_KLEVA Length = 123 Score = 102 bits (253), Expect = 5e-21, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 15 VSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIPTTSI 74 ++ + + G + YLLG+W + KGY+ VLV+G+F+ ++Q+ + + + Sbjct: 7 IARVMMAAGSLVYLLGIWRTCPLFSGKGYFLGVLVMGMFAVLAHQRASQWQEQ----DDG 62 Query: 75 YYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDAGINPPK 134 + C V ++SV LL+VG W EK Y A+F+ L+GA A + R A Sbjct: 63 FIALCRLVLLLSVGLLLVGAWYVPADWHEKAVYIAAWFVCLYGASATPERTRVARAMQKT 122 Query: 135 E 135 E Sbjct: 123 E 123 >UniRef50_O32082 Uncharacterized membrane protein yubF n=3 Tax=Bacillus RepID=YUBF_BACSU Length = 87 Score = 69.3 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAE-MQLNEKGYYFAVLVLGLFSAASYQ 59 M + AF+++++ G+ + +GL+NA+ ++LNEKGYY AV++L A Q Sbjct: 1 MQKYRRRNTVAFTVLAYFTFFAGVFLFSIGLYNADNLELNEKGYYIAVMILVAVGAILTQ 60 Query: 60 KTVRDKYEGIPT 71 K RD E Sbjct: 61 KVTRDNAEDNEI 72 Score = 41.2 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 4/72 (5%) Query: 72 TSIYYMTCLTVFIISVALLMVGLWNAT-LLLSEKGFYGLAFFLSLFGAVAVQKNIRDAGI 130 T + + F V L +GL+NA L L+EKG+Y L GA+ QK RD Sbjct: 9 TVAFTVLAYFTFFAGVFLFSIGLYNADNLELNEKGYYIAVMILVAVGAILTQKVTRD--- 65 Query: 131 NPPKETQVTQEE 142 N + ++E Sbjct: 66 NAEDNEIIAEQE 77 >UniRef50_C0Z6A4 Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z6A4_BREBN Length = 95 Score = 68.5 bits (166), Expect = 6e-11, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 2 DNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAE-MQLNEKGYYFAVLVLGLFSAASYQK 60 + AF+ +++ L G++ + +GL+NA +QL+EKGYY A ++L + QK Sbjct: 4 QKHRMRNTGAFTFLAYFTLGAGVLLFSIGLYNATGLQLHEKGYYIACMLLVAVGSILTQK 63 Query: 61 TVRDKYEGIPT 71 VRD E Sbjct: 64 VVRDNAEDRAI 74 Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 72 TSIYYMTCLTVFIISVALLMVGLWNAT-LLLSEKGFYGLAFFLSLFGAVAVQKNIRDAGI 130 T + V L +GL+NAT L L EKG+Y L G++ QK +RD Sbjct: 11 TGAFTFLAYFTLGAGVLLFSIGLYNATGLQLHEKGYYIACMLLVAVGSILTQKVVRDNAE 70 Query: 131 NPPKETQVTQE 141 + + +E Sbjct: 71 DRAIIEEQERE 81 >UniRef50_B2U561 YiaA/B two helix domain family protein n=1 Tax=Shigella boydii CDC 3083-94 RepID=B2U561_SHIB3 Length = 75 Score = 60.5 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%) Query: 15 VSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIPTTSI 74 V+ + V G + YL+GLW + L+ KGY+ VL+ F +Y +R + G + Sbjct: 7 VAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG-QLDNF 62 Query: 75 YYMTCLTVF 83 + C V Sbjct: 63 FTHICQLVM 71 >UniRef50_A7GKK1 YiaAB two helix domain protein n=63 Tax=Bacillus RepID=A7GKK1_BACCN Length = 78 Score = 52.4 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%) Query: 7 TYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKY 66 + AF+ ++W + V + L+G++ + L+ KGYY + S QKT+RD Sbjct: 4 RNTQAFTFLAWTSFVCALSGMLIGIYTLDETLSVKGYYLIGTLFLTMSCFVLQKTIRDNE 63 Query: 67 EG 68 E Sbjct: 64 ED 65 >UniRef50_B1Y040 YiaAB two helix domain protein n=3 Tax=Burkholderiales RepID=B1Y040_LEPCP Length = 172 Score = 47.0 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 3/136 (2%) Query: 7 TYSPAFSIVSWIALVGGIVTYLLGL-WNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDK 65 + A+++ W++ + GL W + L ++ + + L SA K VRD+ Sbjct: 29 RDTRAWTLQVWLSFAIAVTLCGTGLAWLPGVDL-DRAFMVMGYLFCLCSAFVLSKHVRDQ 87 Query: 66 YEG-IPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKN 124 + TT ++ F++++AL GLW + K + +++ + + K Sbjct: 88 QQTRSETTPMWSAVVWGGFMLAMALTAWGLWRMDIQPVWKAYLAVSWLFLISTVFTLAKT 147 Query: 125 IRDAGINPPKETQVTQ 140 +RDA E ++ Q Sbjct: 148 LRDAHDVRQYERRMQQ 163 >UniRef50_A1TVN9 YiaAB two helix domain protein n=6 Tax=Comamonadaceae RepID=A1TVN9_ACIAC Length = 198 Score = 46.6 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Query: 5 ISTYSPAFSIVSWIALVGGIVTYLLGL-WNAEMQLNEKGYYFAVLVLGLFSAASYQKTVR 63 + + A+ + W++ +GL W +L E+ + V L + K VR Sbjct: 30 VQRDTAAWQLQVWVSFGIAAFCCAVGLAWLPGERL-EQIFMVMGYVFCLSAVFMLAKFVR 88 Query: 64 DKY----EGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAV 119 D G T ++ + F ++V L GLW + + K F G+++ L A Sbjct: 89 DNQAATPRGAGDTPLFKLVVWGGFAVAVGLTGWGLWGMDISPTYKAFLGVSWLYLLTTAF 148 Query: 120 AVQKNIRD 127 + K +RD Sbjct: 149 TLAKMLRD 156 >UniRef50_Q033D1 Predicted membrane protein n=2 Tax=Lactococcus lactis subsp. cremoris RepID=Q033D1_LACLS Length = 84 Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 33/68 (48%) Query: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK 60 M K+ + AF +++W + ++ L+GL+ + L KGYY V + SA + K Sbjct: 1 MKKKVYRNTAAFKLLAWGSFALFVILILIGLYTLKEPLMVKGYYLMGTVGVISSAFTIVK 60 Query: 61 TVRDKYEG 68 RD E Sbjct: 61 VTRDDQED 68 >UniRef50_C2LQV3 YiaA/B two helix domain protein n=3 Tax=Bacilli RepID=C2LQV3_STRSL Length = 86 Score = 40.0 bits (92), Expect = 0.020, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 36/77 (46%) Query: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK 60 + K+ + +F++++W + ++ L+GL+ + L KGYY V + S+ + K Sbjct: 4 VKKKVYRNTTSFNMMAWGSFAFFVILMLVGLYTLKEPLMVKGYYLMGCVGLISSSFTVSK 63 Query: 61 TVRDKYEGIPTTSIYYM 77 VRD E + Sbjct: 64 VVRDNQEDEENYNKLIA 80 >UniRef50_A1VJ08 YiaAB two helix domain protein n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VJ08_POLNA Length = 149 Score = 40.0 bits (92), Expect = 0.021, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 3/141 (2%) Query: 5 ISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRD 64 + + + I W + ++ G+ Q ++ + LF+A + KTVRD Sbjct: 7 MQRDTGGWRIQVWTSFTLAVLASGTGVMQLPSQELDRAFLAIGFFFCLFAAFAAAKTVRD 66 Query: 65 KYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKN 124 +G T+ + +T F +V L GLW + +KG+ +++ + + K Sbjct: 67 NRDGRVDTNGWIITVWVSFAAAVCLTAWGLWRMNIGDWQKGYMVVSWMFLISSTFTLAKT 126 Query: 125 IRD---AGINPPKETQVTQEE 142 IRD A + + Sbjct: 127 IRDRYEADLMTRSNEPAPETR 147 >UniRef50_B0CCP2 YiaA/B two helix domain protein, putative n=3 Tax=Cyanobacteria RepID=B0CCP2_ACAM1 Length = 98 Score = 38.5 bits (88), Expect = 0.063, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 72 TSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDA 128 TS + F +S+A +G+ + KG+ G+ S+ +++ K IRD Sbjct: 13 TSAWIAQTWISFTVSIAATAIGIVYMPVNPWMKGYLGMGTLFSIGSTISLSKTIRDV 69 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q3JFC6 YiaA/B two helix domain family n=99 Tax=Bacteria... 170 1e-41 UniRef50_P0ADJ8 Inner membrane protein yiaA n=60 Tax=Enterobacte... 170 2e-41 UniRef50_A3YER8 Putative uncharacterized protein n=1 Tax=Marinom... 161 7e-39 UniRef50_A6CKE1 Putative uncharacterized protein n=1 Tax=Bacillu... 156 2e-37 UniRef50_B1HSE2 Inner membrane protein n=9 Tax=Bacteria RepID=B1... 155 5e-37 UniRef50_D0SI16 YiaAB two helix domain-containing protein n=1 Ta... 154 9e-37 UniRef50_D0J5W3 YiaAB two helix n=3 Tax=Bacteria RepID=D0J5W3_COMTE 151 7e-36 UniRef50_Q15PS0 YiaAB two helix n=1 Tax=Pseudoalteromonas atlant... 144 1e-33 UniRef50_Q5E8X9 Conserved inner membrane protein n=1 Tax=Vibrio ... 144 1e-33 UniRef50_C1RFL4 Predicted membrane protein, COG4682 n=1 Tax=Cell... 130 1e-29 UniRef50_B1Y040 YiaAB two helix domain protein n=3 Tax=Burkholde... 124 7e-28 UniRef50_A1TVN9 YiaAB two helix domain protein n=6 Tax=Comamonad... 118 6e-26 UniRef50_C9YB60 Inner membrane protein yiaA n=1 Tax=Curvibacter ... 117 9e-26 UniRef50_D0YEB1 YiaAB two helix domain protein n=5 Tax=Klebsiell... 100 2e-20 UniRef50_D2TJU2 Putative membrane protein n=1 Tax=Citrobacter ro... 99 4e-20 UniRef50_P11286 Inner membrane protein yiaB n=59 Tax=Enterobacte... 94 1e-18 UniRef50_B5FLD3 YiaA/B two helix domain protein n=31 Tax=Enterob... 91 1e-17 UniRef50_A7GKK1 YiaAB two helix domain protein n=63 Tax=Bacillus... 76 3e-13 UniRef50_O32082 Uncharacterized membrane protein yubF n=3 Tax=Ba... 75 6e-13 UniRef50_C0Z6A4 Putative uncharacterized protein n=1 Tax=Breviba... 74 2e-12 UniRef50_Q033D1 Predicted membrane protein n=2 Tax=Lactococcus l... 72 4e-12 UniRef50_B2U561 YiaA/B two helix domain family protein n=1 Tax=S... 57 3e-07 Sequences not found previously or not previously below threshold: UniRef50_A1VJ08 YiaAB two helix domain protein n=1 Tax=Polaromon... 76 4e-13 UniRef50_C2LQV3 YiaA/B two helix domain protein n=3 Tax=Bacilli ... 67 2e-10 UniRef50_A9B026 YiaAB two helix domain protein n=1 Tax=Herpetosi... 49 4e-05 UniRef50_B0CCP2 YiaA/B two helix domain protein, putative n=3 Ta... 49 5e-05 UniRef50_Q8Z0P4 Asl0046 protein n=12 Tax=Cyanobacteria RepID=Q8Z... 47 1e-04 UniRef50_B5ZTL9 YiaAB two helix domain protein n=5 Tax=Rhizobium... 46 3e-04 UniRef50_C7PYX3 YiaAB two helix domain protein n=5 Tax=Actinomyc... 44 0.002 UniRef50_A9DCR0 Putative uncharacterized protein n=3 Tax=Alphapr... 43 0.003 UniRef50_Q2S801 Uncharacterized protein conserved in bacteria n=... 43 0.003 UniRef50_B4X1R1 YiaA/B two helix domain family n=3 Tax=Bacteria ... 42 0.009 UniRef50_D0LBJ4 YiaAB two helix domain protein n=9 Tax=Actinomyc... 40 0.016 UniRef50_C1YMS5 Uncharacterized conserved protein n=1 Tax=Nocard... 40 0.025 UniRef50_B1M6D8 YiaAB two helix domain protein n=2 Tax=Rhizobial... 40 0.027 UniRef50_B0UQT4 YiaAB two helix domain protein n=8 Tax=Rhizobial... 39 0.041 UniRef50_Q1ZQA1 Putative uncharacterized protein n=2 Tax=Photoba... 39 0.043 UniRef50_A8KYE5 YiaAB two helix domain protein n=11 Tax=Actinomy... 38 0.089 >UniRef50_Q3JFC6 YiaA/B two helix domain family n=99 Tax=Bacteria RepID=Q3JFC6_BURP1 Length = 356 Score = 170 bits (430), Expect = 1e-41, Method: Composition-based stats. Identities = 79/140 (56%), Positives = 99/140 (70%), Gaps = 2/140 (1%) Query: 2 DNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKT 61 + + S AF SW AL+ G+ YLLGLWNA MQLNEKGYYF VL GLF+A S QK+ Sbjct: 212 NQLHPSTSFAFVAASWAALLAGVCAYLLGLWNAGMQLNEKGYYFTVLAYGLFAAVSLQKS 271 Query: 62 VRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAV 121 VRD+ EG+P T +YY I+++ALL++GL+NATLLLSEKGFY ++F L+LFG+VAV Sbjct: 272 VRDRLEGVPVTGLYYGLAWASVILTIALLVIGLFNATLLLSEKGFYAMSFALALFGSVAV 331 Query: 122 QKNIRD--AGINPPKETQVT 139 QKN RD A ET+V Sbjct: 332 QKNTRDLKAAGRGRAETEVA 351 >UniRef50_P0ADJ8 Inner membrane protein yiaA n=60 Tax=Enterobacteriaceae RepID=YIAA_ECOLI Length = 145 Score = 170 bits (430), Expect = 2e-41, Method: Composition-based stats. Identities = 145/145 (100%), Positives = 145/145 (100%) Query: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK 60 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK Sbjct: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK 60 Query: 61 TVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVA 120 TVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVA Sbjct: 61 TVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVA 120 Query: 121 VQKNIRDAGINPPKETQVTQEEYSE 145 VQKNIRDAGINPPKETQVTQEEYSE Sbjct: 121 VQKNIRDAGINPPKETQVTQEEYSE 145 >UniRef50_A3YER8 Putative uncharacterized protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YER8_9GAMM Length = 188 Score = 161 bits (407), Expect = 7e-39, Method: Composition-based stats. Identities = 75/150 (50%), Positives = 99/150 (66%), Gaps = 8/150 (5%) Query: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK 60 + N++S +PA+ +W AL G+ YLLGLWNA++ LNEKGYYFA+ +L LFS+ + QK Sbjct: 35 ISNQVSRPTPAYLSATWAALAIGVCGYLLGLWNADIMLNEKGYYFAIFILALFSSVTLQK 94 Query: 61 TVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVA 120 TVRDK EG+P T ++ C F S+ALL +GL+NA + LSEKGFY +AF LSLF V Sbjct: 95 TVRDKQEGLPATKVFVGMCWAAFFSSIALLGIGLFNAEMALSEKGFYVMAFILSLFSIVT 154 Query: 121 VQKNIRD--------AGINPPKETQVTQEE 142 VQKN+RD +GIN T + E Sbjct: 155 VQKNVRDLGNKVEISSGINQVTNTPIEANE 184 >UniRef50_A6CKE1 Putative uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CKE1_9BACI Length = 171 Score = 156 bits (395), Expect = 2e-37, Method: Composition-based stats. Identities = 70/136 (51%), Positives = 97/136 (71%), Gaps = 1/136 (0%) Query: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK 60 ++ K + AF SW AL+ G+ YL+GL+NA M+LNEKGYYFAVLV GL++A S QK Sbjct: 36 VERKEGEPTAAFKGASWAALIAGVSAYLIGLFNAGMELNEKGYYFAVLVFGLYAAVSLQK 95 Query: 61 TVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNA-TLLLSEKGFYGLAFFLSLFGAV 119 VRDK E IP + IYY I+S++L+ +GL+NA +++LSEKGFYG++F LSLF A+ Sbjct: 96 AVRDKEEDIPVSGIYYGISWFAVIVSISLMAIGLYNAGSIILSEKGFYGMSFVLSLFAAI 155 Query: 120 AVQKNIRDAGINPPKE 135 +QKNIRD + ++ Sbjct: 156 TIQKNIRDTQLARERD 171 >UniRef50_B1HSE2 Inner membrane protein n=9 Tax=Bacteria RepID=B1HSE2_LYSSC Length = 169 Score = 155 bits (391), Expect = 5e-37, Method: Composition-based stats. Identities = 69/136 (50%), Positives = 93/136 (68%), Gaps = 1/136 (0%) Query: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK 60 ++ + + AF SW AL+ G+ Y +GL+NA M LNE GYY AVLVLGL+SA S QK Sbjct: 34 VERQEGEPTAAFKGASWAALLVGVTAYFIGLFNATMPLNETGYYLAVLVLGLYSAVSLQK 93 Query: 61 TVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNAT-LLLSEKGFYGLAFFLSLFGAV 119 +VRDK EGIP T++YY I+S+ L+ +GL+NA ++LSEKGFYG++F LSLF ++ Sbjct: 94 SVRDKDEGIPVTNMYYGISWIALIVSILLMAIGLYNAESIVLSEKGFYGMSFVLSLFASI 153 Query: 120 AVQKNIRDAGINPPKE 135 VQKNIRD + Sbjct: 154 TVQKNIRDTQRARERN 169 Score = 57.0 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 59 QKTVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGA 118 K ++ EG P T+ + ++ V +GL+NAT+ L+E G+Y L L+ A Sbjct: 30 PKIKVERQEGEP-TAAFKGASWAALLVGVTAYFIGLFNATMPLNETGYYLAVLVLGLYSA 88 Query: 119 VAVQKNIRDAGI 130 V++QK++RD Sbjct: 89 VSLQKSVRDKDE 100 >UniRef50_D0SI16 YiaAB two helix domain-containing protein n=1 Tax=Acinetobacter junii SH205 RepID=D0SI16_ACIJU Length = 152 Score = 154 bits (389), Expect = 9e-37, Method: Composition-based stats. Identities = 70/137 (51%), Positives = 91/137 (66%) Query: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK 60 M N I+ + AF SW+A+V G V +++GLWNA M L+EKG+Y +L+ GLFSA S QK Sbjct: 1 MSNLINRPTLAFIGASWLAVVIGAVGFMIGLWNASMPLHEKGFYLVILLYGLFSAVSLQK 60 Query: 61 TVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVA 120 T+RDK E IP T+IY C T I + LL+ L NATL LSEKG+Y ++F LSLFG A Sbjct: 61 TLRDKLEDIPVTAIYVALCWTSVGICIGLLLFSLSNATLSLSEKGYYIMSFLLSLFGVTA 120 Query: 121 VQKNIRDAGINPPKETQ 137 QKNIRD ++ + Sbjct: 121 TQKNIRDLEHLRLQKRE 137 >UniRef50_D0J5W3 YiaAB two helix n=3 Tax=Bacteria RepID=D0J5W3_COMTE Length = 187 Score = 151 bits (381), Expect = 7e-36, Method: Composition-based stats. Identities = 81/140 (57%), Positives = 97/140 (69%), Gaps = 2/140 (1%) Query: 7 TYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKY 66 S AF SW AL+ G+V ++ GLWNA MQLNEKG+YFAVLVLGL+SA S QKTVRDK Sbjct: 25 KPSTAFVGASWAALLLGVVAFMAGLWNAAMQLNEKGFYFAVLVLGLYSAISLQKTVRDKL 84 Query: 67 EGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIR 126 EG+ T IYY II+V LL GL+NATL LSEKGFY +AF L+LFGA+AVQKN R Sbjct: 85 EGVAVTGIYYGISWVALIIAVLLLGTGLFNATLQLSEKGFYAMAFALALFGAIAVQKNTR 144 Query: 127 D--AGINPPKETQVTQEEYS 144 D + + E + + E S Sbjct: 145 DSLSADDGAAERKRGKSERS 164 >UniRef50_Q15PS0 YiaAB two helix n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15PS0_PSEA6 Length = 147 Score = 144 bits (362), Expect = 1e-33, Method: Composition-based stats. Identities = 68/140 (48%), Positives = 94/140 (67%) Query: 5 ISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRD 64 I + ++++ S AL+ G V Y +GL+NA+M LNEKGYY +++ GLFS S QKT+RD Sbjct: 3 IQAPTKSYTLASLAALLIGTVAYSIGLFNAQMALNEKGYYLIIMLYGLFSMVSLQKTIRD 62 Query: 65 KYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKN 124 K EGI T+S+Y ++ALL +GL+NA L LSEKGFY +A+ LSLF AV VQKN Sbjct: 63 KAEGIKTSSMYQTLSWASSGFAIALLAIGLYNAELALSEKGFYAMAYVLSLFAAVTVQKN 122 Query: 125 IRDAGINPPKETQVTQEEYS 144 +RD K+ +V Q E++ Sbjct: 123 VRDKDALAGKQEEVQQAEFA 142 >UniRef50_Q5E8X9 Conserved inner membrane protein n=1 Tax=Vibrio fischeri ES114 RepID=Q5E8X9_VIBF1 Length = 148 Score = 144 bits (362), Expect = 1e-33, Method: Composition-based stats. Identities = 70/137 (51%), Positives = 91/137 (66%), Gaps = 2/137 (1%) Query: 1 MDNKIS--TYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASY 58 M+ + AF + SW A V G YL GLW + M+LNEKGYYF++L+LGLF+A S Sbjct: 1 MEQHHQYYQPTSAFIMASWGAFVIGSSAYLFGLWKSTMELNEKGYYFSLLLLGLFAAISL 60 Query: 59 QKTVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGA 118 QKT+RDK+EGI TS+Y M+C I ++ L+ +GL NA LLLSEKGF+ +A+ LSLF Sbjct: 61 QKTIRDKHEGINVTSMYMMSCRVALISALVLMAIGLRNAELLLSEKGFFAMAYTLSLFSV 120 Query: 119 VAVQKNIRDAGINPPKE 135 V +QKNIRD E Sbjct: 121 VTIQKNIRDVAATTSDE 137 Score = 46.2 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 9 SPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEG 68 + + + +AL+ +V +GL NAE+ L+EKG++ L LFS + QK +RD Sbjct: 74 TSMYMMSCRVALISALVLMAIGLRNAELLLSEKGFFAMAYTLSLFSVVTIQKNIRDVAAT 133 Query: 69 IPTTSI 74 + Sbjct: 134 TSDEGL 139 >UniRef50_C1RFL4 Predicted membrane protein, COG4682 n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RFL4_9CELL Length = 157 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 61/122 (50%), Positives = 89/122 (72%) Query: 6 STYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDK 65 + + AF SW+ALV I + +GLWNA+M L+EKG+Y +L+LGL+SA + QK+VRD+ Sbjct: 8 ARPTAAFVGASWVALVIAITAFAVGLWNADMLLSEKGFYGTLLLLGLYSAIALQKSVRDR 67 Query: 66 YEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNI 125 EGIP T I+ ++ ++S+ L+ +GL N+TL LSEKGFYGL + ++LF +AVQKN+ Sbjct: 68 AEGIPVTGIFLGLSWSMVLVSLLLVAIGLANSTLTLSEKGFYGLGYTMALFAVIAVQKNV 127 Query: 126 RD 127 RD Sbjct: 128 RD 129 >UniRef50_B1Y040 YiaAB two helix domain protein n=3 Tax=Burkholderiales RepID=B1Y040_LEPCP Length = 172 Score = 124 bits (312), Expect = 7e-28, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 58/137 (42%), Gaps = 3/137 (2%) Query: 6 STYSPAFSIVSWIALVGGIVTYLLGL-WNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRD 64 + A+++ W++ + GL W + L ++ + + L SA K VRD Sbjct: 28 RRDTRAWTLQVWLSFAIAVTLCGTGLAWLPGVDL-DRAFMVMGYLFCLCSAFVLSKHVRD 86 Query: 65 KYEG-IPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQK 123 + + TT ++ F++++AL GLW + K + +++ + + K Sbjct: 87 QQQTRSETTPMWSAVVWGGFMLAMALTAWGLWRMDIQPVWKAYLAVSWLFLISTVFTLAK 146 Query: 124 NIRDAGINPPKETQVTQ 140 +RDA E ++ Q Sbjct: 147 TLRDAHDVRQYERRMQQ 163 >UniRef50_A1TVN9 YiaAB two helix domain protein n=6 Tax=Comamonadaceae RepID=A1TVN9_ACIAC Length = 198 Score = 118 bits (295), Expect = 6e-26, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 6/140 (4%) Query: 4 KISTYSPAFSIVSWIALVGGIVTYLLGL-WNAEMQLNEKGYYFAVLVLGLFSAASYQKTV 62 + + A+ + W++ +GL W +L E+ + V L + K V Sbjct: 29 LVQRDTAAWQLQVWVSFGIAAFCCAVGLAWLPGERL-EQIFMVMGYVFCLSAVFMLAKFV 87 Query: 63 RDKY----EGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGA 118 RD G T ++ + F ++V L GLW + + K F G+++ L A Sbjct: 88 RDNQAATPRGAGDTPLFKLVVWGGFAVAVGLTGWGLWGMDISPTYKAFLGVSWLYLLTTA 147 Query: 119 VAVQKNIRDAGINPPKETQV 138 + K +RD E ++ Sbjct: 148 FTLAKMLRDRHEADLAEARL 167 Score = 40.8 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%) Query: 8 YSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYE 67 +P F +V W + GLW ++ K + + L +A + K +RD++E Sbjct: 100 DTPLFKLVVWGGFAVAVGLTGWGLWGMDISPTYKAFLGVSWLYLLTTAFTLAKMLRDRHE 159 Query: 68 GIPTTSIYYMT 78 + Sbjct: 160 ADLAEARLLGR 170 >UniRef50_C9YB60 Inner membrane protein yiaA n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YB60_9BURK Length = 174 Score = 117 bits (294), Expect = 9e-26, Method: Composition-based stats. Identities = 69/126 (54%), Positives = 85/126 (67%) Query: 6 STYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDK 65 + S A+ ++ L G +LLGLWNAEMQLNEKGYYF +L GLF+A S QK VRDK Sbjct: 39 QSSSGAYVGATFACLGLGTGGFLLGLWNAEMQLNEKGYYFTLLAFGLFAAVSLQKCVRDK 98 Query: 66 YEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNI 125 EGIP + YY C +S+ LL GLWNATLLLSEKG+Y ++F L+L+ AV VQKN+ Sbjct: 99 LEGIPVSGAYYGICYLAVGLSLLLLGTGLWNATLLLSEKGYYAMSFVLALYSAVTVQKNV 158 Query: 126 RDAGIN 131 RD Sbjct: 159 RDKKAI 164 >UniRef50_D0YEB1 YiaAB two helix domain protein n=5 Tax=Klebsiella RepID=D0YEB1_KLEVA Length = 123 Score = 100 bits (248), Expect = 2e-20, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 4/121 (3%) Query: 15 VSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIPTTSI 74 ++ + + G + YLLG+W + KGY+ VLV+G+F+ ++Q+ + + + Sbjct: 7 IARVMMAAGSLVYLLGIWRTCPLFSGKGYFLGVLVMGMFAVLAHQRASQWQEQ----DDG 62 Query: 75 YYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDAGINPPK 134 + C V ++SV LL+VG W EK Y A+F+ L+GA A + R A Sbjct: 63 FIALCRLVLLLSVGLLLVGAWYVPADWHEKAVYIAAWFVCLYGASATPERTRVARAMQKT 122 Query: 135 E 135 E Sbjct: 123 E 123 >UniRef50_D2TJU2 Putative membrane protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TJU2_CITRO Length = 120 Score = 99.0 bits (245), Expect = 4e-20, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 4/112 (3%) Query: 13 SIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIPTT 72 + +SW+ L G +TY++G W A L+ KGY+ V + F A Y +R+ G Sbjct: 5 TFISWLLLFSGTLTYVIGFWRACPLLSGKGYFLGVFITVWFVAWVY---LREVMRG-EID 60 Query: 73 SIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKN 124 + C + ++ LL+VG+ NA L E+ Y +A +SL G V V + Sbjct: 61 ERFISVCKLMALVMTGLLLVGVINAPLTPGERVLYPVALCVSLLGLVRVIRT 112 >UniRef50_P11286 Inner membrane protein yiaB n=59 Tax=Enterobacteriaceae RepID=YIAB_ECOLI Length = 113 Score = 94.0 bits (232), Expect = 1e-18, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 4/110 (3%) Query: 15 VSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIPTTSI 74 V+ + V G + YL+GLW + L+ KGY+ VL+ F +Y +R + G Sbjct: 7 VAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG-QLDDF 62 Query: 75 YYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKN 124 + C V +I++ LL +G+ NA + E Y +AFF+ LFG + + ++ Sbjct: 63 FTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 >UniRef50_B5FLD3 YiaA/B two helix domain protein n=31 Tax=Enterobacteriaceae RepID=B5FLD3_SALDC Length = 117 Score = 90.9 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 11/117 (9%) Query: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK 60 MD+ ++ F + LV G V YL+GLW L+EKGY+FA +V+ + Sbjct: 1 MDDHVARRKRIFGL---GMLVVGAVVYLVGLWPGCHTLSEKGYFFAAIVMC-----GFPV 52 Query: 61 TVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFG 117 +R ++ G C ++ ++ + ++ VG++N L + K +A +S++G Sbjct: 53 LIRQEHTG---NGRLLSRCKSLLLLGIGMVAVGVFNLALAGALKILCLVALGVSIYG 106 >UniRef50_A7GKK1 YiaAB two helix domain protein n=63 Tax=Bacillus RepID=A7GKK1_BACCN Length = 78 Score = 76.2 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 31/66 (46%) Query: 5 ISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRD 64 + AF+ ++W + V + L+G++ + L+ KGYY + S QKT+RD Sbjct: 2 RRRNTQAFTFLAWTSFVCALSGMLIGIYTLDETLSVKGYYLIGTLFLTMSCFVLQKTIRD 61 Query: 65 KYEGIP 70 E Sbjct: 62 NEEDNE 67 Score = 45.0 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 72 TSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDAGIN 131 T + T F+ +++ +++G++ LS KG+Y + +QK IRD + Sbjct: 6 TQAFTFLAWTSFVCALSGMLIGIYTLDETLSVKGYYLIGTLFLTMSCFVLQKTIRDNEED 65 >UniRef50_A1VJ08 YiaAB two helix domain protein n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VJ08_POLNA Length = 149 Score = 75.9 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 51/122 (41%) Query: 6 STYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDK 65 + + I W + ++ G+ Q ++ + LF+A + KTVRD Sbjct: 8 QRDTGGWRIQVWTSFTLAVLASGTGVMQLPSQELDRAFLAIGFFFCLFAAFAAAKTVRDN 67 Query: 66 YEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNI 125 +G T+ + +T F +V L GLW + +KG+ +++ + + K I Sbjct: 68 RDGRVDTNGWIITVWVSFAAAVCLTAWGLWRMNIGDWQKGYMVVSWMFLISSTFTLAKTI 127 Query: 126 RD 127 RD Sbjct: 128 RD 129 Score = 45.8 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%) Query: 8 YSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYE 67 + + I W++ + GLW + +KGY + + S + KT+RD+YE Sbjct: 73 DTNGWIITVWVSFAAAVCLTAWGLWRMNIGDWQKGYMVVSWMFLISSTFTLAKTIRDRYE 132 Query: 68 GIPTT 72 T Sbjct: 133 ADLMT 137 >UniRef50_O32082 Uncharacterized membrane protein yubF n=3 Tax=Bacillus RepID=YUBF_BACSU Length = 87 Score = 75.1 bits (183), Expect = 6e-13, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAE-MQLNEKGYYFAVLVLGLFSAASYQ 59 M + AF+++++ G+ + +GL+NA+ ++LNEKGYY AV++L A Q Sbjct: 1 MQKYRRRNTVAFTVLAYFTFFAGVFLFSIGLYNADNLELNEKGYYIAVMILVAVGAILTQ 60 Query: 60 KTVRDKYEGIPT 71 K RD E Sbjct: 61 KVTRDNAEDNEI 72 Score = 54.7 bits (130), Expect = 9e-07, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 72 TSIYYMTCLTVFIISVALLMVGLWNAT-LLLSEKGFYGLAFFLSLFGAVAVQKNIRDAGI 130 T + + F V L +GL+NA L L+EKG+Y L GA+ QK RD Sbjct: 9 TVAFTVLAYFTFFAGVFLFSIGLYNADNLELNEKGYYIAVMILVAVGAILTQKVTRDNAE 68 Query: 131 NPPKETQVTQEE 142 + + + + Sbjct: 69 DNEIIAEQEKRQ 80 >UniRef50_C0Z6A4 Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z6A4_BREBN Length = 95 Score = 73.9 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 2 DNKISTYSPAFSIVSWIALVGGIVTYLLGLWNA-EMQLNEKGYYFAVLVLGLFSAASYQK 60 + AF+ +++ L G++ + +GL+NA +QL+EKGYY A ++L + QK Sbjct: 4 QKHRMRNTGAFTFLAYFTLGAGVLLFSIGLYNATGLQLHEKGYYIACMLLVAVGSILTQK 63 Query: 61 TVRDKYEGIPT 71 VRD E Sbjct: 64 VVRDNAEDRAI 74 Score = 68.2 bits (165), Expect = 8e-11, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 72 TSIYYMTCLTVFIISVALLMVGLWNAT-LLLSEKGFYGLAFFLSLFGAVAVQKNIRDAGI 130 T + V L +GL+NAT L L EKG+Y L G++ QK +RD Sbjct: 11 TGAFTFLAYFTLGAGVLLFSIGLYNATGLQLHEKGYYIACMLLVAVGSILTQKVVRDNAE 70 Query: 131 NPPKETQVTQE 141 + + +E Sbjct: 71 DRAIIEEQERE 81 >UniRef50_Q033D1 Predicted membrane protein n=2 Tax=Lactococcus lactis subsp. cremoris RepID=Q033D1_LACLS Length = 84 Score = 72.4 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 33/70 (47%) Query: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK 60 M K+ + AF +++W + ++ L+GL+ + L KGYY V + SA + K Sbjct: 1 MKKKVYRNTAAFKLLAWGSFALFVILILIGLYTLKEPLMVKGYYLMGTVGVISSAFTIVK 60 Query: 61 TVRDKYEGIP 70 RD E Sbjct: 61 VTRDDQEDDE 70 Score = 42.0 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%) Query: 72 TSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDAGIN 131 T+ + + F + V L+++GL+ L KG+Y + + A + K RD + Sbjct: 9 TAAFKLLAWGSFALFVILILIGLYTLKEPLMVKGYYLMGTVGVISSAFTIVKVTRDDQED 68 Query: 132 PPKETQVTQE 141 + ++ + Sbjct: 69 DERYNEMFRA 78 >UniRef50_C2LQV3 YiaA/B two helix domain protein n=3 Tax=Bacilli RepID=C2LQV3_STRSL Length = 86 Score = 66.6 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 35/70 (50%) Query: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK 60 + K+ + +F++++W + ++ L+GL+ + L KGYY V + S+ + K Sbjct: 4 VKKKVYRNTTSFNMMAWGSFAFFVILMLVGLYTLKEPLMVKGYYLMGCVGLISSSFTVSK 63 Query: 61 TVRDKYEGIP 70 VRD E Sbjct: 64 VVRDNQEDEE 73 Score = 42.0 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 1/75 (1%) Query: 72 TSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDAGIN 131 T+ + M F V L++VGL+ L KG+Y + + + V K +RD + Sbjct: 12 TTSFNMMAWGSFAFFVILMLVGLYTLKEPLMVKGYYLMGCVGLISSSFTVSKVVRDNQED 71 Query: 132 PP-KETQVTQEEYSE 145 + Q+ + + Sbjct: 72 EENYNKLIAQQTFEQ 86 >UniRef50_B2U561 YiaA/B two helix domain family protein n=1 Tax=Shigella boydii CDC 3083-94 RepID=B2U561_SHIB3 Length = 75 Score = 56.6 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%) Query: 15 VSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIPTTSI 74 V+ + V G + YL+GLW + L+ KGY+ VL+ F +Y +R + G + Sbjct: 7 VAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG-QLDNF 62 Query: 75 YYMTCLTVF 83 + C V Sbjct: 63 FTHICQLVM 71 >UniRef50_A9B026 YiaAB two helix domain protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B026_HERA2 Length = 94 Score = 49.3 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 33/71 (46%) Query: 5 ISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRD 64 I + A+ +WI+ IV LLG+++A + + K + + + S + KT+RD Sbjct: 6 IQKDTGAWIAFTWISFFISIVALLLGIYHAPVDIWVKSFLAVAALFAIGSTFTLAKTIRD 65 Query: 65 KYEGIPTTSIY 75 E + Y Sbjct: 66 NSEASKMINRY 76 Score = 45.8 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 29/73 (39%) Query: 70 PTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDAG 129 T + F IS+ L++G+++A + + K F +A ++ + K IRD Sbjct: 8 KDTGAWIAFTWISFFISIVALLLGIYHAPVDIWVKSFLAVAALFAIGSTFTLAKTIRDNS 67 Query: 130 INPPKETQVTQEE 142 + + Sbjct: 68 EASKMINRYADAK 80 >UniRef50_B0CCP2 YiaA/B two helix domain protein, putative n=3 Tax=Cyanobacteria RepID=B0CCP2_ACAM1 Length = 98 Score = 48.9 bits (115), Expect = 5e-05, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 2/84 (2%) Query: 64 DKYEGIPT--TSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAV 121 DK PT TS + F +S+A +G+ + KG+ G+ S+ +++ Sbjct: 3 DKQITTPTVHTSAWIAQTWISFTVSIAATAIGIVYMPVNPWMKGYLGMGTLFSIGSTISL 62 Query: 122 QKNIRDAGINPPKETQVTQEEYSE 145 K IRD + +++ + + + Sbjct: 63 SKTIRDVEESKRVLSRLDEAKLEK 86 Score = 40.4 bits (93), Expect = 0.019, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 26/67 (38%) Query: 9 SPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEG 68 + A+ +WI+ I +G+ + KGY + + S S KT+RD E Sbjct: 13 TSAWIAQTWISFTVSIAATAIGIVYMPVNPWMKGYLGMGTLFSIGSTISLSKTIRDVEES 72 Query: 69 IPTTSIY 75 S Sbjct: 73 KRVLSRL 79 >UniRef50_Q8Z0P4 Asl0046 protein n=12 Tax=Cyanobacteria RepID=Q8Z0P4_ANASP Length = 97 Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 28/73 (38%) Query: 70 PTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDAG 129 + + + F++S+++ G+ N + KGF + S+ + K RD Sbjct: 11 KDSPAWVIQTWAAFMLSISMTSFGIVNLPVDNWVKGFMSMGLAFSVGSTFTLAKTTRDLH 70 Query: 130 INPPKETQVTQEE 142 ++ + + Sbjct: 71 EARRLAARIDEAK 83 Score = 44.7 bits (104), Expect = 8e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%) Query: 6 STYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDK 65 SPA+ I +W A + I G+ N + KG+ L + S + KT RD Sbjct: 10 QKDSPAWVIQTWAAFMLSISMTSFGIVNLPVDNWVKGFMSMGLAFSVGSTFTLAKTTRDL 69 Query: 66 YE 67 +E Sbjct: 70 HE 71 >UniRef50_B5ZTL9 YiaAB two helix domain protein n=5 Tax=Rhizobium RepID=B5ZTL9_RHILW Length = 93 Score = 46.2 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%) Query: 1 MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQK 60 M++ +S ++ S+I+ LGL+ + L KGY +++ + + + K Sbjct: 1 MNDSFQKHSASWVSFSYISFGSAAFMLALGLYMMPLDLWGKGYLAMGILMLVQTTVNITK 60 Query: 61 TVRDKYE 67 T+RD E Sbjct: 61 TLRDNAE 67 Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 28/71 (39%) Query: 72 TSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDAGIN 131 ++ + F + +L +GL+ L L KG+ + + + V + K +RD + Sbjct: 9 SASWVSFSYISFGSAAFMLALGLYMMPLDLWGKGYLAMGILMLVQTTVNITKTLRDNAES 68 Query: 132 PPKETQVTQEE 142 +V Sbjct: 69 EKLIRKVEDAR 79 >UniRef50_C7PYX3 YiaAB two helix domain protein n=5 Tax=Actinomycetales RepID=C7PYX3_CATAD Length = 96 Score = 43.9 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%) Query: 72 TSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDAGIN 131 T+ YY + FI+S ++G+ + E+ F GL ++ A+ + K +RD Sbjct: 10 TAAYYFQAVASFIVSTGATVIGIAYLPVNAWERAFLGLGLLYTITSAITLAKVVRDKQDE 69 Query: 132 PPKETQVTQEE 142 +V + Sbjct: 70 VQLVGRVDKAR 80 Score = 40.0 bits (92), Expect = 0.020, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 27/69 (39%) Query: 6 STYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDK 65 + A+ + + + ++G+ + E+ + L+ + SA + K VRDK Sbjct: 7 QKNTAAYYFQAVASFIVSTGATVIGIAYLPVNAWERAFLGLGLLYTITSAITLAKVVRDK 66 Query: 66 YEGIPTTSI 74 + + Sbjct: 67 QDEVQLVGR 75 >UniRef50_A9DCR0 Putative uncharacterized protein n=3 Tax=Alphaproteobacteria RepID=A9DCR0_9RHIZ Length = 95 Score = 43.1 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 33/79 (41%) Query: 64 DKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQK 123 + I + + M FI++ ++ G++ + KGFY +A + + +V + K Sbjct: 3 ENQPIIAPGNSWTMFTGLSFIVAAGMMAGGIYFLEASFAAKGFYAMAAIMLVHTSVTITK 62 Query: 124 NIRDAGINPPKETQVTQEE 142 +RD + ++ Sbjct: 63 TLRDVEESRRLSNRIDDAR 81 >UniRef50_Q2S801 Uncharacterized protein conserved in bacteria n=2 Tax=Gammaproteobacteria RepID=Q2S801_HAHCH Length = 90 Score = 42.7 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 5 ISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRD 64 I + S + + V + G++ + L KGY+ + + S + KT+RD Sbjct: 6 IQSNSKGWLFYVKSSFVIALAAVGAGIFFMPVDLLIKGYFSISTLFLISSTITLSKTMRD 65 Query: 65 KYE 67 ++E Sbjct: 66 EHE 68 Score = 40.8 bits (94), Expect = 0.012, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 33/71 (46%) Query: 72 TSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDAGIN 131 + + + F+I++A + G++ + L KG++ ++ + + + K +RD + Sbjct: 10 SKGWLFYVKSSFVIALAAVGAGIFFMPVDLLIKGYFSISTLFLISSTITLSKTMRDEHES 69 Query: 132 PPKETQVTQEE 142 ++ + + Sbjct: 70 HRLIHKINEAK 80 >UniRef50_B4X1R1 YiaA/B two helix domain family n=3 Tax=Bacteria RepID=B4X1R1_9GAMM Length = 90 Score = 41.6 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 29/71 (40%) Query: 72 TSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDAGIN 131 + + F IS+ L+++G+ L KG+ + + + + K +RD Sbjct: 10 SGGWLFYVKAAFGISLGLMILGIVWLPTDLWIKGYLVMGSMFVVGSTITLAKTLRDDHEA 69 Query: 132 PPKETQVTQEE 142 ++++ + Sbjct: 70 RRLVNRISEAK 80 Score = 40.8 bits (94), Expect = 0.012, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 28/73 (38%) Query: 2 DNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKT 61 ++ I +S + A + +LG+ L KGY + + S + KT Sbjct: 3 ESAIQRHSGGWLFYVKAAFGISLGLMILGIVWLPTDLWIKGYLVMGSMFVVGSTITLAKT 62 Query: 62 VRDKYEGIPTTSI 74 +RD +E + Sbjct: 63 LRDDHEARRLVNR 75 >UniRef50_D0LBJ4 YiaAB two helix domain protein n=9 Tax=Actinomycetales RepID=D0LBJ4_GORB4 Length = 96 Score = 40.4 bits (93), Expect = 0.016, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 29/74 (39%) Query: 69 IPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDA 128 PTT Y++ F +S+ ++G+ + ++GF G+ + K +RD Sbjct: 8 SPTTVAYFIQAAIAFGVSLGTAIIGILYLPIDAWQRGFLGITLLFLTSSTFTLAKVVRDR 67 Query: 129 GINPPKETQVTQEE 142 ++ + Sbjct: 68 QEQTTVRARIDEAR 81 >UniRef50_C1YMS5 Uncharacterized conserved protein n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YMS5_NOCDA Length = 95 Score = 40.0 bits (92), Expect = 0.025, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 25/64 (39%) Query: 6 STYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDK 65 +P F + S ++ V G+ + L + + L+ + S + K VRD+ Sbjct: 8 PRSTPQFFLQSVLSFGAASVGVGAGIVYLPVDLWIRAFLGLGLLYVVTSTFTLAKCVRDR 67 Query: 66 YEGI 69 E Sbjct: 68 QEDA 71 >UniRef50_B1M6D8 YiaAB two helix domain protein n=2 Tax=Rhizobiales RepID=B1M6D8_METRJ Length = 91 Score = 39.7 bits (91), Expect = 0.027, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%) Query: 69 IPTTSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDA 128 +P T + L F + A+L +G++ + KG+ +A + K +RD Sbjct: 5 MPHTGAWKTFTLVSFAAAAAMLTIGIFFLPAEIWIKGYLAMASLFLTGTTFTLAKTLRDE 64 Query: 129 GINPPKETQVT 139 ++ Sbjct: 65 HEAKRLINKIE 75 >UniRef50_B0UQT4 YiaAB two helix domain protein n=8 Tax=Rhizobiales RepID=B0UQT4_METS4 Length = 91 Score = 39.3 bits (90), Expect = 0.041, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 27/71 (38%) Query: 72 TSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDAGIN 131 TS + F+ + ++ G+ L L KG+ + + + V + K +RD + Sbjct: 10 TSAWVAFTYASFLGAATMVGGGILFLPLDLWIKGYLAMGVVMLVQSCVTLVKTVRDVHES 69 Query: 132 PPKETQVTQEE 142 ++ Sbjct: 70 KRMVNRIEDAR 80 >UniRef50_Q1ZQA1 Putative uncharacterized protein n=2 Tax=Photobacterium RepID=Q1ZQA1_PHOAS Length = 85 Score = 39.3 bits (90), Expect = 0.043, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 30/74 (40%) Query: 72 TSIYYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDAGIN 131 + + FII+ +++ + L KG+Y + + + + K IRD + Sbjct: 5 DNYWLTYAKATFIIATIAMIISIVKLPGDLIVKGYYSICSLFLVSATITLSKAIRDEAES 64 Query: 132 PPKETQVTQEEYSE 145 ++ + + ++ Sbjct: 65 NRLINRIEEAKTAK 78 >UniRef50_A8KYE5 YiaAB two helix domain protein n=11 Tax=Actinomycetales RepID=A8KYE5_FRASN Length = 116 Score = 38.1 bits (87), Expect = 0.089, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 26/69 (37%) Query: 6 STYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDK 65 + AF + + ++ +V + + +G+ ++ + S + K VRD+ Sbjct: 26 PRTTTAFMVQAALSFGISVVAVTYAIAHLPGDAWIRGFLLLGMLYIITSTFTLAKCVRDQ 85 Query: 66 YEGIPTTSI 74 E S Sbjct: 86 QEASAVISR 94 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.320 0.135 0.348 Lambda K H 0.267 0.0412 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 703,241,338 Number of Sequences: 3077464 Number of extensions: 21855918 Number of successful extensions: 88879 Number of sequences better than 1.0e-01: 42 Number of HSP's better than 0.1 without gapping: 80 Number of HSP's successfully gapped in prelim test: 12 Number of HSP's that attempted gapping in prelim test: 88632 Number of HSP's gapped (non-prelim): 150 length of query: 145 length of database: 1,040,396,356 effective HSP length: 109 effective length of query: 36 effective length of database: 704,952,780 effective search space: 25378300080 effective search space used: 25378300080 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 87 (38.1 bits)