84 c2cjpA_ Probab=99.36   E-value=1.8e-10  Score=85.56  Aligned_columns=226  Identities=12%

Q ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHCCCC-CEEEEEECCCCCCCCCC-------CCCHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             88772899898877648899999733789-71999857788887645-------17989999999999999689998999
Q batch____      1063 GNGPTLFCFHPASGFAWQFSVLSRYLDPQ-WSIIGIQSPRPNGPMQT-------AANLDEVCEAHLATLLEQQPHGPYYL 1134 (1293)
Q Consensus      1063 g~~~~lf~~h~~~G~~~~y~~L~~~l~~~-~~vygl~~p~~~~~~~~-------~~~i~~~a~~y~~~i~~~~p~gpy~l 1134 (1293)
                      |++||++|+|+.+++...|..+++.|... +.|+++..||+.....+       ....+................+++.+
T Consensus        21 G~gp~vlliHG~~~~~~~~~~~~~~L~~~g~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (320)
T c2cjpA_          21 GEGPTILFIHGFPELWYSWRHQMVYLAERGYRAVAPDLRGYGDTTGAPLNDPSKFSILHLVGDVVALLEAIAPNEEKVFV  100 (320)
T ss_dssp             CSSSEEEEECCTTCCGGGGHHHHHHHHTTTCEEEEECCTTSTTCBCCCTTCGGGGSHHHHHHHHHHHHHHHCTTCSSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf             58877999886899888899999999978989999677689899776666643222798988776421001358784389


Q ss_pred             EEECHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC-------------------------------------------
Q ss_conf             9257388999999999998889877999983889876-------------------------------------------
Q batch____      1135 LGYSLGGTLAQGIAARLRARGEQVAFLGLLDTWPPET------------------------------------------- 1171 (1293)
Q Consensus      1135 ~G~S~Gg~iA~e~A~~L~~~G~~v~~l~llD~~~~~~------------------------------------------- 1171 (1293)
                      +|||+||.+|...|.+   ....+..++++++.....                                           
T Consensus       101 vg~S~Gg~~a~~~a~~---~~~~~~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (320)
T c2cjpA_         101 VAHDWGALIAWHLCLF---RPDKVKALVNLSVHFSKRNPKMNVVEGLKAIYGEDHYISRFQVPGEIEAEFAPIGAKSVLK  177 (320)
T ss_dssp             EEETHHHHHHHHHHHH---CGGGEEEEEEESCCCCCCCSSCCHHHHHHHHHCTTBHHHHTSSTTHHHHHHHHHCHHHHHH
T ss_pred             EEECHHHHHHHHHHHH---HHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCHHHHHCCHHHHHHHH
T ss_conf             9717246999999985---0002158998158777766431034442222010134555431010145420012457899


Q ss_pred             --------------CCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf             --------------667720122104899999777788863113456898999999999999999986178863021079
Q batch____      1172 --------------QNWQEKEANGLDPEVLAEINREREAFLAAQQGSTSTELFTTIEGNYADAVRLLTTAHSVPFDGKAT 1237 (1293)
Q Consensus      1172 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1237 (1293)
                                    .............................................................+.|++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~p~l  257 (320)
T c2cjpA_         178 KILTYRDPAPFYFPKGKGLEAIPDAPVALSSWLSEEELDYYANKFEQTGFTGAVNYYRALPINWELTAPWTGAQVKVPTK  257 (320)
T ss_dssp             HHHTCCCSSCCBCCTTCTTTTSCCCCGGGGTTSCHHHHHHHHHHHHHHCSHHHHHHHHTHHHHHHHTGGGTTCCCCSCEE
T ss_pred             HHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCEE
T ss_conf             98621123310000234443210000122111202357776654034452457998874210233200000225899889


Q ss_pred             EEEECCCCCCCCCCHHHH-------HHHCCCCEEEEECC-CHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             997078777657703316-------86449828999059-877872927899999999998369
Q batch____      1238 LFVAERTLQEGMSPERAW-------SPWIAELDIYRQDC-AHVDIISPGTFEKIGPIIRATLNR 1293 (1293)
Q Consensus      1238 ~~~a~~~~~~~~~~~~~W-------~~~~~~~~~~~v~g-~H~~~l~~~~~~~~a~~i~~~l~r 1293 (1293)
                      ++.++++..........|       +...++.+++.+++ .|+-++..|  +.+++.|.+.|+|
T Consensus       258 ~i~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gH~~~~e~p--~~v~~~i~~fL~k  319 (320)
T c2cjpA_         258 FIVGEFDLVYHIPGAKEYIHNGGFKKDVPLLEEVVVLEGAAHFVSQERP--HEISKHIYDFIQK  319 (320)
T ss_dssp             EEEETTCGGGGSTTHHHHHHHSHHHHHSTTBCCCEEETTCCSCHHHHSH--HHHHHHHHHHHTT
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHCH--HHHHHHHHHHHHC
T ss_conf             9995788733889999999854566642798189997898458668278--9999999998850