BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (378 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_B4SUI6 Cytochrome D ubiquinol oxidase, subunit II n=25 ... 563 e-159 UniRef50_P0ABK4 Cytochrome d ubiquinol oxidase subunit 2 n=387 T... 450 e-125 UniRef50_A6VVF5 Cytochrome d ubiquinol oxidase, subunit II n=22 ... 392 e-107 UniRef50_Q2J1M0 Cytochrome d ubiquinol oxidase, subunit II n=83 ... 381 e-104 UniRef50_A4G4W0 Cytochrome d ubiquinol oxidase subunit 2 (Cytoch... 357 3e-97 UniRef50_A5F0M8 Cytochrome d ubiquinol oxidase, subunit II n=74 ... 354 4e-96 UniRef50_Q609X1 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 333 9e-90 UniRef50_C5AXY0 Cytochrome d terminal oxidase, polypeptide subun... 325 1e-87 UniRef50_A0KIS6 Cytochrome D ubiquinol oxidase, subunit II n=2 T... 283 9e-75 UniRef50_A5FZ08 Cytochrome d ubiquinol oxidase, subunit II n=15 ... 274 3e-72 UniRef50_A9KD50 Cytochrome d ubiquinol oxidase subunit II n=3 Ta... 270 7e-71 UniRef50_B0U137 Alkaline phosphatase n=18 Tax=Francisella RepID=... 258 2e-67 UniRef50_B0TEW5 Cytochrome bd ubiquinol oxidase, subunit ii n=1 ... 223 1e-56 UniRef50_B3QXC1 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 219 2e-55 UniRef50_A1AN69 Cytochrome d ubiquinol oxidase, subunit II n=30 ... 216 1e-54 UniRef50_D1BDL9 Cytochrome d oxidase cyd, subunit II n=2 Tax=Act... 215 2e-54 UniRef50_B7GK13 Cytochrome bd-type quinol oxidase, subunit 2 n=2... 211 3e-53 UniRef50_A8VUL7 Aspartate kinase n=1 Tax=Bacillus selenitireduce... 206 8e-52 UniRef50_C1DWD8 Cytochrome D ubiquinol oxidase, subunit II n=1 T... 206 2e-51 UniRef50_D1U471 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 204 4e-51 UniRef50_Q2IFY9 Cytochrome d ubiquinol oxidase, subunit II n=5 T... 196 8e-49 UniRef50_C9KPM5 Cytochrome D ubiquinol oxidase, subunit II n=1 T... 190 6e-47 UniRef50_B4U7P7 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 187 6e-46 UniRef50_C8WK01 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 186 2e-45 UniRef50_C0W2T5 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 185 2e-45 UniRef50_B6WVU2 Putative uncharacterized protein n=1 Tax=Desulfo... 183 7e-45 UniRef50_D1BV47 Cytochrome d ubiquinol oxidase, subunit II n=7 T... 177 6e-43 UniRef50_B2UM68 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 177 8e-43 UniRef50_O67371 Cytochrome oxidase d subunit II n=1 Tax=Aquifex ... 176 1e-42 UniRef50_A5CR84 Cytochrome bd-type menaquinol oxidase subunit II... 176 2e-42 UniRef50_D0WHD0 Cytochrome D ubiquinol oxidase, subunit II n=1 T... 172 2e-41 UniRef50_A7HAW4 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 171 3e-41 UniRef50_A7ZAA3 CydB n=16 Tax=Bacillales RepID=A7ZAA3_BACA2 171 4e-41 UniRef50_Q46G86 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 169 1e-40 UniRef50_C2C3U7 Cytochrome bd ubiquinol oxidase subunit II n=2 T... 167 6e-40 UniRef50_B9P917 Predicted protein n=7 Tax=cellular organisms Rep... 163 1e-38 UniRef50_Q816N2 Cytochrome d ubiquinol oxidase subunit II n=73 T... 163 1e-38 UniRef50_D1A2D3 Cytochrome d ubiquinol oxidase, subunit II n=34 ... 162 2e-38 UniRef50_C8XGP9 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 162 2e-38 UniRef50_C7M6E4 Cytochrome d ubiquinol oxidase, subunit II n=7 T... 161 3e-38 UniRef50_P94365 Cytochrome d ubiquinol oxidase subunit 2 n=76 Ta... 160 5e-38 UniRef50_Q6ABD4 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 160 6e-38 UniRef50_A0LSG2 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 160 7e-38 UniRef50_Q0YUS4 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 160 8e-38 UniRef50_C2KPN0 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 157 6e-37 UniRef50_Q67RR5 Cytochrome D ubiquinol oxidase subunit II n=2 Ta... 157 7e-37 UniRef50_Q6MAP6 Putative cytochrome bd-I oxidase subunit II n=1 ... 154 3e-36 UniRef50_A5FA89 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 154 4e-36 UniRef50_Q255C4 Cytochrome D oxidase subunit II n=14 Tax=Chlamyd... 152 1e-35 UniRef50_D1R937 Putative uncharacterized protein n=1 Tax=Parachl... 152 2e-35 UniRef50_C7N0L6 Cytochrome d oxidase cyd, subunit II n=1 Tax=Sla... 148 3e-34 UniRef50_C7RCZ4 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 148 3e-34 UniRef50_A0PP39 Integral membrane cytochrome D ubiquinol oxidase... 145 2e-33 UniRef50_Q0BVW7 Cyanide-insensitive cytochrome bd-type quinol ox... 144 4e-33 UniRef50_Q1J2Z7 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 143 1e-32 UniRef50_B1VE35 Cytochrome d ubiquinol oxidase subunit 2 n=4 Tax... 139 1e-31 UniRef50_C7MDJ2 Cytochrome d oxidase cyd, subunit II n=1 Tax=Bra... 139 1e-31 UniRef50_B1MXQ3 Cytochrome d ubiquinol oxidase, subunit II n=30 ... 138 3e-31 UniRef50_Q1ILJ8 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 137 8e-31 UniRef50_Q040K6 Cytochrome bd-type quinol oxidase, subunit 2 n=5... 136 1e-30 UniRef50_D2B3T8 Cytochrome oxidase subunit II n=1 Tax=Streptospo... 136 1e-30 UniRef50_Q4KA99 Cytochrome d ubiquinol oxidase, subunit II n=66 ... 135 3e-30 UniRef50_C2KAY6 Cytochrome d ubiquinol oxidase, subunit II n=5 T... 133 1e-29 UniRef50_A6C9B8 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 133 1e-29 UniRef50_C2CTD2 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 131 4e-29 UniRef50_A0LMS2 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 130 9e-29 UniRef50_A2RMA6 Cytochrome d ubiquinol oxidase, subunit II n=5 T... 128 3e-28 UniRef50_A1R5L7 Cytochrome d ubiquinol oxidase, subunit II n=18 ... 125 4e-27 UniRef50_D1RLM4 Cytochrome D ubiquinol oxidase subunit II n=1 Ta... 124 4e-27 UniRef50_B0UGT2 Cytochrome d ubiquinol oxidase, subunit II n=17 ... 124 5e-27 UniRef50_Q937L0 Cytochrome d terminal oxidase (Fragment) n=1 Tax... 123 1e-26 UniRef50_B8ESY7 Cytochrome d ubiquinol oxidase, subunit II n=4 T... 122 2e-26 UniRef50_A6W2X5 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 121 4e-26 UniRef50_C5A672 Cytochrome bd ubiquinol oxidase, subunit II (Cyd... 120 1e-25 UniRef50_Q2SP33 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 119 1e-25 UniRef50_B2SK06 Cytochrome D ubiquinol oxidase, subunit II n=5 T... 118 4e-25 UniRef50_B0VC09 Ubiquinol oxidase subunit II, cyanide insensitiv... 117 9e-25 UniRef50_Q5ZZ11 Cytochrome D ubiquinol oxidase subunit II, cyani... 115 2e-24 UniRef50_C8WEN7 Cytochrome d ubiquinol oxidase, subunit II n=14 ... 115 3e-24 UniRef50_A8GFS1 Cytochrome d ubiquinol oxidase, subunit II n=19 ... 114 6e-24 UniRef50_B6IQW9 Ubiquinol oxidase subunit II, cyanide insensitiv... 112 2e-23 UniRef50_C0R3J3 Cytochrome d ubiquinol oxidase, subunit II n=31 ... 112 2e-23 UniRef50_D2B3F0 Cytochrome d ubiquinol oxidase subunit II n=1 Ta... 112 3e-23 UniRef50_UPI0001C321E0 cytochrome d ubiquinol oxidase, subunit I... 111 5e-23 UniRef50_C0XPN4 Cytochrome bd ubiquinol oxidase subunit II n=2 T... 109 2e-22 UniRef50_B4RAL0 Cytochrome oxidase, subunit II n=2 Tax=Proteobac... 107 9e-22 UniRef50_C0G2G6 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 106 1e-21 UniRef50_A6W8I8 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 105 3e-21 UniRef50_C7HZB4 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 105 3e-21 UniRef50_A4SZB4 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 105 3e-21 UniRef50_D0L0A7 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 105 3e-21 UniRef50_A8V528 Beta and gamma crystallin:Cytochrome bd ubiquino... 105 3e-21 UniRef50_C4XJ24 Putative cytochrome d ubiquinol oxidase subunit ... 104 4e-21 UniRef50_A9ASF7 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 102 2e-20 UniRef50_Q4UWQ0 Cytochrome D oxidase subunit B n=3 Tax=Xanthomon... 102 2e-20 UniRef50_D2S1W8 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 102 2e-20 UniRef50_Q03D44 Cytochrome bd-type quinol oxidase, fusion of sub... 102 3e-20 UniRef50_Q2JM63 Cytochrome d ubiquinol oxidase, subunit II n=30 ... 100 7e-20 UniRef50_A0Q8B4 Cytochrome bd-II terminal oxidase subunit II n=1... 98 5e-19 UniRef50_D2L7C6 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 98 6e-19 UniRef50_D0XNI3 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 96 2e-18 UniRef50_A7I116 Cytochrome D ubiquinol oxidase, subunit II n=1 T... 95 4e-18 UniRef50_C6NVA4 Cytochrome d ubiquinol oxidase, subunit II n=4 T... 93 1e-17 UniRef50_B2JUZ0 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 91 9e-17 UniRef50_B2IDR4 Cytochrome d ubiquinol oxidase, subunit II n=19 ... 89 2e-16 UniRef50_UPI000038268B COG1294: Cytochrome bd-type quinol oxidas... 86 2e-15 UniRef50_B4RY64 Quinol oxidase, subunit II n=3 Tax=Gammaproteoba... 86 2e-15 UniRef50_B2RJL6 Cytochrome d ubiquinol oxidase subunit II n=56 T... 84 7e-15 UniRef50_Q1LCN4 Cytochrome d ubiquinol oxidase, subunit II n=69 ... 84 1e-14 UniRef50_A6Q1A5 Cytochrome bd oxidase subunit II n=1 Tax=Nitrati... 84 1e-14 UniRef50_C9Q1E8 Cytochrome D ubiquinol oxidase subunit II n=7 Ta... 82 4e-14 UniRef50_B9L7C1 Cytochrome bd oxidase subunit II n=2 Tax=Nautili... 80 1e-13 UniRef50_B9Z1X7 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 79 2e-13 UniRef50_UPI0001B55F87 cytochrome bd-type menaquinol oxidase sub... 79 3e-13 UniRef50_C3DRT5 Cytochrome d ubiquinol oxidase subunit II n=2 Ta... 79 3e-13 UniRef50_C4DN93 Cytochrome d oxidase cyd, subunit II n=1 Tax=Sta... 79 4e-13 UniRef50_C7NNR2 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 77 8e-13 UniRef50_B2SHW9 Cytochrome D ubiquinol oxidase subunit II n=2 Ta... 77 8e-13 UniRef50_A8EQ33 Cytochrome D ubiquinol oxidase subunit II n=1 Ta... 77 9e-13 UniRef50_B0R8N6 Cytochrome d ubiquinol oxidase subunit II n=2 Ta... 77 1e-12 UniRef50_A7ZG70 Cytochrome D ubiquinol oxidase, subunit II n=4 T... 75 3e-12 UniRef50_B3QK51 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 75 6e-12 UniRef50_D2B5X6 Cytochrome bd-type quinol oxidase subunit 2-like... 72 4e-11 UniRef50_A9CZ56 Cytochrome bd ubiquinol oxidase, subunit II n=1 ... 71 7e-11 UniRef50_C4DV22 Cytochrome d oxidase cyd, subunit II n=1 Tax=Sta... 71 8e-11 UniRef50_A6G8S6 Cytochrome bd ubiquinol oxidase, subunit II n=1 ... 70 1e-10 UniRef50_A7MEL0 Putative uncharacterized protein n=2 Tax=Cronoba... 68 6e-10 UniRef50_A6LFA4 Cytochrome D ubiquinol oxidase subunit II n=13 T... 67 1e-09 UniRef50_D1A755 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 67 2e-09 UniRef50_A3ZTP2 Putative cytochrome d ubiquinol oxidase subunit ... 61 7e-08 UniRef50_Q47RW4 Putative cytochrome D ubiquinol oxidase subunit ... 61 7e-08 UniRef50_D1CB62 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 61 7e-08 UniRef50_D2BDC9 Cytochrome d ubiquinol oxidase subunit II n=1 Ta... 61 8e-08 UniRef50_D2AUB4 Terminal oxidase subunit II n=1 Tax=Streptospora... 59 2e-07 UniRef50_C1YQX5 Cytochrome bd-type quinol oxidase, subunit 2 n=1... 59 2e-07 UniRef50_C6VWT6 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 54 8e-06 UniRef50_C0AEE2 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 54 8e-06 UniRef50_A9AX76 Cytochrome bd ubiquinol oxidase subunit II n=2 T... 54 1e-05 UniRef50_C6XT47 Cytochrome bd ubiquinol oxidase subunit II n=7 T... 52 3e-05 UniRef50_A8V4U0 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 52 4e-05 UniRef50_Q2KVX4 Putative cytochrome oxidase D ubiquinol oxidase,... 51 5e-05 UniRef50_C6DYH0 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 48 5e-04 UniRef50_B9TGE2 Putative uncharacterized protein n=1 Tax=Ricinus... 48 5e-04 UniRef50_Q2JGE7 Cytochrome bd ubiquinol oxidase, subunit II n=3 ... 47 0.001 UniRef50_A0LZZ1 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 47 0.001 UniRef50_C7QJB4 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 45 0.003 UniRef50_A7H8Z5 Cytochrome bd ubiquinol oxidase subunit II n=6 T... 45 0.003 UniRef50_B5HKZ6 Cytochrome bd-I oxidase subunit II n=3 Tax=Strep... 44 0.010 UniRef50_A4FDV9 Cytochrome d ubiquinol oxidase subunit II n=4 Ta... 44 0.010 UniRef50_UPI0001C31BDC Cytochrome bd-type quinol oxidase subunit... 42 0.036 UniRef50_D1NY02 Cyanide-insensitive oxidase CioB n=1 Tax=Provide... 42 0.047 UniRef50_B3SF07 Putative uncharacterized protein n=1 Tax=Trichop... 42 0.050 >UniRef50_B4SUI6 Cytochrome D ubiquinol oxidase, subunit II n=25 Tax=Salmonella enterica subsp. enterica RepID=B4SUI6_SALNS Length = 378 Score = 563 bits (1451), Expect = e-159, Method: Compositional matrix adjust. Identities = 304/378 (80%), Positives = 338/378 (89%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M DYETLRFIWWLLIGVILV FM++DGFDMG+GCLLPL+ARNDDERR++INSVGAHWEGN Sbjct: 1 MLDYETLRFIWWLLIGVILVAFMVTDGFDMGVGCLLPLIARNDDERRVLINSVGAHWEGN 60 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLC+LFFRPLAFDYRGKIA+ARWR +WD Sbjct: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCALFFRPLAFDYRGKIANARWRALWD 120 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 GLVIGSLVPPVVFGIAFGNL LGVPFAFTPQL V+Y G+FWQLL+PF LLCGLLSL +V Sbjct: 121 TGLVIGSLVPPVVFGIAFGNLFLGVPFAFTPQLHVDYFGTFWQLLSPFALLCGLLSLSLV 180 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 I+QGGVWLQLKT GVI R+ AT+ +ALL+++CFLLAGYWLW G+DGFVLL QDANGPS Sbjct: 181 IMQGGVWLQLKTEGVIRQRALSATRHSALLIVICFLLAGYWLWAGVDGFVLLTQDANGPS 240 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 NPL+K VA+LPGAWMN+F+ SP+L I PLLG P+L A RG+ GFL ASL Q Sbjct: 241 NPLLKGVAILPGAWMNHFIRSPLLLIIPLLGMILPILAFYACLRGQTIRGFLFASLTQAC 300 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 VIFTAGITLFPFVMPSSVSP+SSLT+WDSTSSQ+TL IMLVIVLIFLPIVLLYTLWSYYK Sbjct: 301 VIFTAGITLFPFVMPSSVSPLSSLTVWDSTSSQMTLEIMLVIVLIFLPIVLLYTLWSYYK 360 Query: 361 MWGRMTTETLRRNENELY 378 M GR+ ETLRRN++ELY Sbjct: 361 MLGRINLETLRRNDHELY 378 >UniRef50_P0ABK4 Cytochrome d ubiquinol oxidase subunit 2 n=387 Tax=Bacteria RepID=CYDB_ECO57 Length = 379 Score = 450 bits (1157), Expect = e-125, Method: Compositional matrix adjust. Identities = 218/379 (57%), Positives = 279/379 (73%), Gaps = 1/379 (0%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M DYE LRFIWWLL+GV+L+ F ++DGFDMG+G L + RND ERRI+INS+ HW+GN Sbjct: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 QVWLI AGGALFAAWP VYAAAFSGFYVAMILVL SLFFRP+ FDYR KI + RWR MWD Sbjct: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 G+ IGS VPP+V G+AFGNLL GVPF LR+ Y G+F+QLL PF LL G++S+GM+ Sbjct: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQ-DANGP 239 I QG +LQ++TVG +HLR++ + AAL+ ++CF LAG W+ GIDG+V+ + D Sbjct: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299 SNPL K V GAW+ NF +P+LW P LG PLLT++ + W F+ +SL Sbjct: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 Query: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359 +I TAGI +FPFVMPSS +SLT+WD+TSSQLTL++M + ++ +PI+LLYT W Y+ Sbjct: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 Query: 360 KMWGRMTTETLRRNENELY 378 KM+GR+T E + RN + LY Sbjct: 361 KMFGRITKEDIERNTHSLY 379 >UniRef50_A6VVF5 Cytochrome d ubiquinol oxidase, subunit II n=22 Tax=Proteobacteria RepID=A6VVF5_MARMS Length = 378 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 197/377 (52%), Positives = 262/377 (69%), Gaps = 1/377 (0%) Query: 3 DYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQV 62 DYE L+ IWW+LIGV+L+ F ++DGFDMG+G LL ++ ND ERR++INS+ HW+GNQV Sbjct: 2 DYELLKVIWWVLIGVLLIGFSVTDGFDMGVGSLLKIIGGNDSERRVMINSIAPHWDGNQV 61 Query: 63 WLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAG 122 W I AGGALFAAWP VYA +FSGFY AM+LVL +LFFRP+ FDYR K+ + +WR WD G Sbjct: 62 WFITAGGALFAAWPVVYATSFSGFYFAMMLVLAALFFRPIGFDYRSKLENTKWRNGWDWG 121 Query: 123 LVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVIL 182 + GS VPP++FG+AFGNLL GVPF F LRV Y GSF+ LL PF +LCGL+SL M++ Sbjct: 122 ITFGSAVPPIIFGVAFGNLLQGVPFEFDQYLRVTYTGSFFALLNPFAILCGLVSLLMLMT 181 Query: 183 QGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQ-DANGPSN 241 QGG WLQ+KT + ++ T L + F++AG WL GIDG+VL + D N Sbjct: 182 QGGAWLQMKTDDALLEKASRITAITGALAAVLFIIAGVWLAYGIDGYVLTSSIDGNKVMT 241 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 PLMK V PGAW+ N+ + P L + P++G L + + FL +SL G+ Sbjct: 242 PLMKTAEVQPGAWLANYDKVPALMLAPIIGIAGMLFAAITAVMRKGALSFLSSSLGIAGI 301 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 I TAG ++FPF+MPSS P SLT+WD+TSS+ T+ IM V+ IF+PIVL+YTLW+Y+ M Sbjct: 302 IVTAGGSMFPFLMPSSSYPSMSLTMWDATSSENTMMIMFVVACIFVPIVLIYTLWNYFVM 361 Query: 362 WGRMTTETLRRNENELY 378 +GR+T + + N + LY Sbjct: 362 YGRLTKKHIEENNHSLY 378 >UniRef50_Q2J1M0 Cytochrome d ubiquinol oxidase, subunit II n=83 Tax=Bacteria RepID=Q2J1M0_RHOP2 Length = 383 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 201/383 (52%), Positives = 265/383 (69%), Gaps = 5/383 (1%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M DYETL+F+WW+ +G++L+ F I+DG DMG+G LLP VAR D ERRI INSVG HW+GN Sbjct: 1 MLDYETLKFVWWIFVGLLLMGFAITDGMDMGVGTLLPFVARKDVERRIAINSVGPHWDGN 60 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 QVW I AGGA+FAAWP VYAAAFSGFY+AM+LVL +LFFRP+ FDYR KI + WR WD Sbjct: 61 QVWFITAGGAIFAAWPAVYAAAFSGFYMAMLLVLFALFFRPVGFDYRSKIENPTWRNAWD 120 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGS----FWQLLTPFPLLCGLLS 176 GL G +P ++FG+AFGNLL GVPF LR Y GS LL PF LL G++S Sbjct: 121 WGLFAGGAIPALIFGVAFGNLLQGVPFRLDELLRSHYQGSLLTALLPLLNPFALLAGVIS 180 Query: 177 LGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDA 236 L M+ GGVWLQL+ G + R++ A + +V + F LAG WLW+G+DG+ ++ + A Sbjct: 181 LAMLAAHGGVWLQLRASGAVADRARKAVLLLSPIVAVAFALAGVWLWLGVDGYRIVKEAA 240 Query: 237 N-GPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMAS 295 + SNPL K V PGAW++ + + P+ I P LG PLLT++ RPG F+ ++ Sbjct: 241 HSAASNPLAKEVVRAPGAWLDIYAKQPLAMIVPALGLVGPLLTMLLAAVHRPGLAFVTSA 300 Query: 296 LMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTL 355 G+I TAG+++FPF+MPSS+ P SSLT+WD+ SS+LTL++M V+IFLPIVL YT+ Sbjct: 301 FGMIGIIGTAGLSMFPFIMPSSIDPRSSLTIWDAASSELTLTVMFWAVVIFLPIVLGYTV 360 Query: 356 WSYYKMWGRMTTETLRRNENELY 378 W Y MWGR+T + + + Y Sbjct: 361 WCYANMWGRVTADEIEARAHSAY 383 >UniRef50_A4G4W0 Cytochrome d ubiquinol oxidase subunit 2 (Cytochrome d ubiquinol oxidase subunit II) (Cytochrome bd-I oxidase subunit II) n=37 Tax=Bacteria RepID=A4G4W0_HERAR Length = 384 Score = 357 bits (917), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 179/379 (47%), Positives = 247/379 (65%), Gaps = 1/379 (0%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 + DY+ LR WW LIGV+L+ F ++DGFD+G G LLP VARND ERR+VINSVG WEGN Sbjct: 6 LIDYDILRLTWWALIGVLLLAFAVTDGFDLGTGILLPFVARNDIERRVVINSVGPVWEGN 65 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 QVWLIL GGA+FAAWP++YA AFSGFY+AM +L +L RP+AF +R K D WR WD Sbjct: 66 QVWLILGGGAIFAAWPQLYAVAFSGFYLAMFAILVALILRPVAFKFRSKREDPGWRARWD 125 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 L VP ++FG+A GN+L GVPF + + Y GSF+ LL PF LLCGL+S+ M+ Sbjct: 126 GVLFFSGFVPSLIFGVALGNVLQGVPFRLDLDMHIFYEGSFFGLLNPFALLCGLVSVAML 185 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQ-DANGP 239 + G WLQLKT GV+ R++ AAL +L + AG LW +DG+ + + D GP Sbjct: 186 AMHGSAWLQLKTDGVVAERARRYGSMAALATVLLYGCAGLLLWKYVDGYRISSMIDPVGP 245 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299 SNPL+K V GAW N+ P P+LG + + + R + L +++ Sbjct: 246 SNPLLKTVEGHAGAWFVNYTAQPWTMAAPVLGLLGAIGAWLGLRMRREIFTLLCSAVSIS 305 Query: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359 G++ + G ++FPF++PSS+ P +SLT+WDS+SS LTL IMLV+ +IF+PI++ YT W Y+ Sbjct: 306 GIVLSVGASMFPFILPSSIHPAASLTVWDSSSSHLTLFIMLVVSVIFIPIIVAYTTWVYH 365 Query: 360 KMWGRMTTETLRRNENELY 378 +WG++ + +R Y Sbjct: 366 VLWGKVDEKAIRDETGHAY 384 >UniRef50_A5F0M8 Cytochrome d ubiquinol oxidase, subunit II n=74 Tax=Gammaproteobacteria RepID=A5F0M8_VIBC3 Length = 378 Score = 354 bits (908), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 172/379 (45%), Positives = 255/379 (67%), Gaps = 2/379 (0%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 MF+Y+TLR IWW LIG +L+ FMI+DGFDMG+G LLP++ +++ ++R++INS+ HW+GN Sbjct: 1 MFEYDTLRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGN 60 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 QVWLI AGGALFAAWP VYA +FS Y+AM L+L +L+ RPLA +YR KI WRK+ D Sbjct: 61 QVWLITAGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICD 120 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 + + L+PP++FG+AFGNL+ G+PF+ L V+Y GSF L+TPF +L G + + M Sbjct: 121 ISISLSGLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMA 180 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQ-DANGP 239 ++QG WL LKT ++H +++L + + L + F++ G+ + G++G+++++ D N Sbjct: 181 LVQGSAWLTLKTSDILHKKARLTAQISVLCLFGLFIIGGFMVH-GMNGYLIVSSLDYNAI 239 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299 SNPL K+V GAW+ NF P +W P+ G + ++ F+ AS+ Sbjct: 240 SNPLNKVVFQQAGAWLTNFERYPWMWFAPMGGLMMAMGVFLSAKWKNDAITFVCASVTNA 299 Query: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359 +I TAG +FPF+MPSS P SLTLWD+TSS+ TL+IM + + LPI+L YT +SY Sbjct: 300 CIILTAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSYR 359 Query: 360 KMWGRMTTETLRRNENELY 378 M+GR+ + + RN + LY Sbjct: 360 TMFGRLDKQYIERNHHSLY 378 >UniRef50_Q609X1 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Methylococcus capsulatus RepID=Q609X1_METCA Length = 378 Score = 333 bits (853), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 175/379 (46%), Positives = 241/379 (63%), Gaps = 2/379 (0%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 MFDYET+R IWW++ G + F+++ GFD GIG LLP + RND ERR+VIN++G W+GN Sbjct: 1 MFDYETMRVIWWVITGAVATGFVLTVGFDFGIGALLPFIGRNDVERRVVINTIGPTWDGN 60 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 QVWLIL GGA+FA WP VYA FSG Y+AM+LVL +LFFRP+ FDYR K+ +WR WD Sbjct: 61 QVWLILLGGAIFAVWPAVYATLFSGLYIAMLLVLYTLFFRPVGFDYRSKLESPQWRTAWD 120 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 GL IG VPPV+ G+ GNLL+G+PF LR Y GSFW LLTPFPLLCG++ L Sbjct: 121 WGLFIGGAVPPVLMGVLVGNLLVGLPFHLDGSLRTFYDGSFWGLLTPFPLLCGVIGLLAC 180 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGI-DGFVLLAQDANGP 239 + G V+L +T I R++ ++++L +LA W+ +GI +L N P Sbjct: 181 VFHGAVYLGCRTERPIEQRARRVAAIGGVVLVLLMILAAAWVILGIPRPEILTMAGPNAP 240 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299 SNP+ K V G+W+ NF+ P L++ P L GR F +++ Sbjct: 241 SNPMAKTVD-FSGSWLGNFLAHPRLFVAPALAVLGVSAAAALAGSGRSAAAFAASAVGMG 299 Query: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359 G+++T G LFPF++ S+ P SSLT+WD+++S L L L I L+FLPIVLLYT W+Y Sbjct: 300 GLLWTVGFGLFPFMLISTTDPRSSLTIWDASASHLNLQWSLAITLMFLPIVLLYTRWAYR 359 Query: 360 KMWGRMTTETLRRNENELY 378 +WG++T + + ++ LY Sbjct: 360 VIWGKVTVADIAKGDHTLY 378 >UniRef50_C5AXY0 Cytochrome d terminal oxidase, polypeptide subunit II n=6 Tax=Alphaproteobacteria RepID=C5AXY0_METEA Length = 384 Score = 325 bits (833), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 179/378 (47%), Positives = 239/378 (63%), Gaps = 2/378 (0%) Query: 3 DYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQV 62 DYE+LR IWW+L+GV+L+ F ++DGFD+G+G LLP V R D ERR+ I++V A WEGNQV Sbjct: 7 DYESLRLIWWVLLGVLLIGFAVTDGFDLGVGALLPFVGRTDVERRVAIHTVSATWEGNQV 66 Query: 63 WLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAG 122 WL+L GGA+FAAWP +YA +FSGFY+AM LVL +L RP+AF YR K A A WR WD Sbjct: 67 WLVLGGGAIFAAWPALYALSFSGFYLAMFLVLFALILRPVAFKYRSKRASAAWRSRWDWA 126 Query: 123 LVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVIL 182 L +G VP ++FG+A GN+L GVPF FT LR Y GS LL P LLCGL+SL M++ Sbjct: 127 LFVGGAVPALIFGVAVGNVLQGVPFHFTGDLRPIYGGSLLGLLNPLALLCGLVSLVMLVA 186 Query: 183 QGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDG--FVLLAQDANGPS 240 G WL K G + R++ +AAL F L G +W G G V+ +GPS Sbjct: 187 HGAAWLAFKAEGAVAERARAIGLKAALATAALFTLGGLLIWAGAFGGYRVVSPLPGDGPS 246 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 NPL K V GAW+ NF P L + PLLG PLL + G FL +SL Sbjct: 247 NPLTKAVVADAGAWLANFRAHPALALVPLLGIVGPLLAALGFRARHEGLTFLASSLGIAC 306 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 +I T G+++FP ++PS+ P +LT++D++SS+ TL ML+ +IFLPI+L YT W Y Sbjct: 307 IIATVGLSMFPVILPSNTHPGHALTVFDASSSRATLRNMLIATVIFLPIILAYTAWVYRV 366 Query: 361 MWGRMTTETLRRNENELY 378 +WG+++ + + Y Sbjct: 367 LWGKVSDRDITAPGSAAY 384 >UniRef50_A0KIS6 Cytochrome D ubiquinol oxidase, subunit II n=2 Tax=Aeromonas RepID=A0KIS6_AERHH Length = 375 Score = 283 bits (723), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 179/376 (47%), Positives = 231/376 (61%), Gaps = 2/376 (0%) Query: 3 DYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQV 62 DYETL+ IWW L+ +LV F++ DGFD+G+ LLP+VA+ND+ERR+++NSVG WEGNQV Sbjct: 2 DYETLKLIWWGLVLFMLVGFVVMDGFDLGVAMLLPVVAKNDEERRVLLNSVGPVWEGNQV 61 Query: 63 WLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAG 122 WLI GALFAAWP VYAAAFS YV + +L LF RP+ FDYR K+AD WR+ WD Sbjct: 62 WLIAGAGALFAAWPLVYAAAFSALYVPFMFLLFGLFLRPVGFDYRSKLADPVWRRWWDRA 121 Query: 123 LVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVIL 182 LV+G L+P +VFG G LL G+PF F LR+ Y G+F P L C +L +++L Sbjct: 122 LVVGGLLPTLVFGATLGFLLQGLPFRFDAALRIHY-GAF-DFHWPLLLTCMGTALALLLL 179 Query: 183 QGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNP 242 G +LQ KT G I R + L F L G WL VL D NG P Sbjct: 180 HGASFLQCKTQGEIARRCARQSLWLGPLASGLFALGGVWLSQMAGYRVLEIGDINGALTP 239 Query: 243 LMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVI 302 LMK V V W+ NFV P LW P LG P+++ +A R P L + ++ Sbjct: 240 LMKEVGVAQQGWLANFVAHPWLWCVPALGLVLPMVSSLASARELPRTALLASGGACASMM 299 Query: 303 FTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMW 362 T I LFPFV+PSS+ P SSLTLWDSTSS+ TL IML IV + +PI + YTLW Y + Sbjct: 300 LTIAIALFPFVLPSSLDPSSSLTLWDSTSSERTLFIMLGIVGVLMPINIGYTLWVYRVVR 359 Query: 363 GRMTTETLRRNENELY 378 G+M+ + +R++ + LY Sbjct: 360 GKMSAQQIRQHGHSLY 375 >UniRef50_A5FZ08 Cytochrome d ubiquinol oxidase, subunit II n=15 Tax=Proteobacteria RepID=A5FZ08_ACICJ Length = 379 Score = 274 bits (701), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 160/381 (41%), Positives = 227/381 (59%), Gaps = 14/381 (3%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 Y L+ IW +L+GV+L I G DMG+G LL V R D ERR + +G HW+GNQVW Sbjct: 4 YIALKVIWAVLLGVLLSGLGIMVGMDMGVGALLRFVGRTDAERRTALAVIGPHWDGNQVW 63 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 IL GGA+FAA+P +YA +FS FYV MIL+L S+ RP+AF+YR K+ RWR WD Sbjct: 64 FILGGGAIFAAFPTLYATSFSTFYVVMILLLFSMIMRPVAFEYRSKVDARRWRATWDWAF 123 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSF-WQLLTPFPLLCGLLSLGMVIL 182 +I +P +++G AFGN+L GV F F+ + GSF W LL PF ++CG+LSL + + Sbjct: 124 LISGALPMIIYGAAFGNVLQGVGFHFSWDGQYYQDGSFIWYLLNPFAVMCGVLSLALAVH 183 Query: 183 QGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNP 242 QGG L ++ G I R++ A LL F + G W+ I GF A P NP Sbjct: 184 QGGAMLMIRGEGPIAERARRYAVPAGLLAAALFAIGGVWVRF-IKGFAYTA-----PVNP 237 Query: 243 LM-------KLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMAS 295 M VA+ GAWM+NF + PVLW+ P +G + +A+ +P G+ + + Sbjct: 238 AMPATPLGGPAVAMRAGAWMDNFHQHPVLWLLPAVGLLGMVAGPLALAARKPILGWWLGA 297 Query: 296 LMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTL 355 L G IFT G +FPF+MPS+ +P SLT+W+++ S L ML L+F+PI+L YT Sbjct: 298 LAWIGTIFTTGAAMFPFLMPSTTAPAQSLTVWNASGSAYNLGWMLAFALVFVPIILSYTA 357 Query: 356 WSYYKMWGRMTTETLRRNENE 376 W++ M G++ TE++ N++ Sbjct: 358 WAFRVMRGKVKTESVIANDHS 378 >UniRef50_A9KD50 Cytochrome d ubiquinol oxidase subunit II n=3 Tax=Coxiella burnetii RepID=A9KD50_COXBN Length = 381 Score = 270 bits (690), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 140/378 (37%), Positives = 227/378 (60%), Gaps = 1/378 (0%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 + +Y L+ +WW++IG ILVV+ + GFD G+ ++P + RN+ +RRI++N+ W+GN Sbjct: 3 LLNYTFLKVVWWMIIGSILVVYASTAGFDSGVTMIMPFL-RNETQRRILLNTSAPVWDGN 61 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 W++ AGG LF WP VY+ AFSG Y+ ++ ++ SLF RP +DYRGK+ WR+ WD Sbjct: 62 LTWILFAGGGLFVVWPVVYSTAFSGLYLILLFIMWSLFLRPPGYDYRGKLPSPIWRRSWD 121 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 L I S+VP FG+AFGN LLG PF F R Y GS+++L F +L G S+ MV Sbjct: 122 VALFISSIVPVFFFGLAFGNCLLGFPFHFDSLFRDYYTGSWFELFNGFGILSGTASVLMV 181 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 ++ G ++Q +T G + + A +L+ + F +AG + I G+ L++ + Sbjct: 182 LMHGSAYIQRRTEGDLRELGRRIHYIATVLLTIAFSVAGLLVLYRIKGYTLISYPKDATI 241 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 PL +V GAW+N++ P + P+ + +LT+++ + + F ++L G Sbjct: 242 YPLNNVVIRSVGAWLNSYNHHPWKYFGPIFAYLGIILTLLSNFFRWYTFCFWSSALAIMG 301 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 +I T G TLFPF+MPSS +P SLT+W++TSSQ L++ML + +I ++L Y L++Y+ Sbjct: 302 LIGTIGFTLFPFIMPSSTAPDQSLTVWNATSSQYGLNVMLYVGVILFIVILGYKLYAYHT 361 Query: 361 MWGRMTTETLRRNENELY 378 +W + T T + E + + Sbjct: 362 IWSKQKTITEKDLETDKH 379 >UniRef50_B0U137 Alkaline phosphatase n=18 Tax=Francisella RepID=B0U137_FRAP2 Length = 398 Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 149/400 (37%), Positives = 231/400 (57%), Gaps = 31/400 (7%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 + L+ I WL++GV++ + + GFD G+G L V ++D E+R +IN+VG W+G+QVW Sbjct: 4 DVLQIISWLVVGVLIFLVAATVGFDFGVGILAKFVGKDDYEKRAIINTVGPTWDGSQVWF 63 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 I AGGA+FA WP+VYA +FSG Y+A++LVL LF RP AF+YR KI + W+ WD L+ Sbjct: 64 ITAGGAIFAIWPQVYATSFSGLYIAILLVLWGLFLRPPAFEYRKKIDNPTWKNFWDWMLL 123 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEY-------LGSFW----QLLTPFPLLCG 173 +GS++P VV G+A GNL LG P ++ R+ Y S W LLTPF LL G Sbjct: 124 LGSVIPIVVMGVAIGNLYLGFPISYDDTARLIYGTVTDGQYQSMWVTLIHLLTPFALLFG 183 Query: 174 LLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLA 233 + +L M ++ G + +L+T GV+ R + T A + ++ F++A W+ + I G+ Sbjct: 184 IFALNMSLMHGSAYAKLRTDGVLRDRFRKITNVTATIYLVLFVVAAIWIAL-IPGY---- 238 Query: 234 QDANGPS---------NPLMKLVAVLPGAWMNNFVESPVLWIF--PLLGFFCPLLTVMAI 282 Q + G S +P V +W NF ++ +W++ P+L F LL + Sbjct: 239 QYSTGASCTYASEALQHPFSAGVITSDHSWYYNFTQAKTIWMWFAPILAFVGALLVIKFN 298 Query: 283 YRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPIS-SLTLWDSTSSQLTLSIMLV 341 + + G F+ + G + T G LFPF+M S+V SLT+++++SSQ +L +L Sbjct: 299 NKDKDGAAFIASMASLLGAVLTVGFALFPFIMVSNVGNFQYSLTVFNASSSQTSLIGILC 358 Query: 342 IVLIFLPIVLLYTLWSYYKMWG---RMTTETLRRNENELY 378 +I LPI+ YT + Y KMW R++ E ++ N +ELY Sbjct: 359 AAVIILPIIFSYTFFVYKKMWANGRRVSAEEVKANSHELY 398 >UniRef50_B0TEW5 Cytochrome bd ubiquinol oxidase, subunit ii n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TEW5_HELMI Length = 345 Score = 223 bits (567), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 130/353 (36%), Positives = 216/353 (61%), Gaps = 32/353 (9%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L+ W++L+GV+L+ + + DGFD+G+G L L+ ++ DERR +I S+G +W+ NQVWL+ Sbjct: 4 LQITWFVLVGVLLLGYALLDGFDLGVGSLY-LLTKDPDERRRMIYSIGPYWDSNQVWLLT 62 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GGA+FAA+P VYA FSGFY+A++LVL +L FR ++ +++ ++ WRK WD G +G Sbjct: 63 GGGAIFAAFPMVYATVFSGFYLALMLVLFALIFRAVSIEFQHQLDSPGWRKWWDLGFSLG 122 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 SL+P +++G+A GN+L G+P YLG F LL P+ L+ GL+SL + + G Sbjct: 123 SLLPSILYGVAVGNILRGIPL----DANGGYLGDFLGLLNPYSLVMGLVSLSLFAMHGAA 178 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 ++ ++ G + ++++ + A L ++ FL+ W ++G P + Sbjct: 179 FIISQSDGALQVKARRWARAAWLTLLPLFLIGTAWSYLG---------------TPRL-- 221 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMAS-LMQFGVIFTA 305 +N+ + P+LW+FPL+ L A +G +G L AS L FG++ T Sbjct: 222 --------FSNYFDVPLLWVFPLIALLG-LAAFPAALKGGNAYGPLGASALTIFGLLTTM 272 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSY 358 +LFP+++P+S + +SLT+++++SS+ TL IML++ LI LPIVL YT + Y Sbjct: 273 AASLFPYIVPASNNLANSLTVFNASSSERTLMIMLILALIGLPIVLTYTAYIY 325 >UniRef50_B3QXC1 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QXC1_CHLT3 Length = 359 Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 129/365 (35%), Positives = 211/365 (57%), Gaps = 19/365 (5%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW+LLIGV+L+ + I DGFD+G+G L L+A++D+ERR+++NS+G W+GN+VWLI Sbjct: 3 LNTIWYLLIGVLLIGYAILDGFDLGVGAL-HLLAKDDNERRLLLNSIGPVWDGNEVWLIT 61 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GGALFAA+P YA AFSGFY+A +L+L SL R ++ ++R K WR WD IG Sbjct: 62 GGGALFAAFPHAYATAFSGFYLAFMLLLVSLISRAVSIEFRSKRESQAWRNFWDYSFSIG 121 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S++ ++FG+A GN++ G+ +EY G+F+ LLTP+ +L G+ +L + + G + Sbjct: 122 SVLSAILFGVAIGNMVAGIKIG----SDMEYAGTFFDLLTPYTVLAGVFNLALFTMHGAI 177 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVM-LCFLLAGYWLWVGIDGFVLLA----QDANGPSN 241 +L +KT G + R + RA + + L ++ L++ + + Q A G ++ Sbjct: 178 YLFVKTEGDLQERVKGWAMRAFFVFLALYVIVTAATLYMKPEMIANFSFGKIQPATGSAH 237 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 L++ N V S WI +L + G+ FL ++ + Sbjct: 238 ELIQ---------SNQVVISVFAWIIVILNGLAIANIPRTLVHGKELQAFLSSACTIAAL 288 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 +F + +FP ++ SS+ P SLT++++ SS+ TL ML++ LI +P+VL YT+ Y+ Sbjct: 289 VFLFAVGVFPNMITSSLDPAYSLTIYNAASSEKTLFTMLIMALIGMPLVLSYTISIYWVF 348 Query: 362 WGRMT 366 G+ T Sbjct: 349 RGKTT 353 >UniRef50_A1AN69 Cytochrome d ubiquinol oxidase, subunit II n=30 Tax=Bacteria RepID=A1AN69_PELPD Length = 351 Score = 216 bits (550), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 133/375 (35%), Positives = 207/375 (55%), Gaps = 29/375 (7%) Query: 3 DYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQV 62 + + IW++L GV+ + ++DGF +G G + +A++D ERR++IN+VG W+GN+V Sbjct: 2 EAHAFQIIWFVLWGVLWSFYFMTDGFVLGTGFMSGFLAKSDTERRVLINTVGPIWDGNEV 61 Query: 63 WLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAG 122 WL+ AGGA FAA+P YA FS Y A++L+L +L R +AF++RGKI W+K WD Sbjct: 62 WLVTAGGATFAAFPTTYALMFSNLYTALLLLLFALIVRGVAFEFRGKIDSPSWKKGWDRA 121 Query: 123 LVIGSLVPPVVFGIAFGNLLLGVPF--AFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 + I S +P ++FG+AFGN+ G+P F+ + Y GS LL P+ LL G+L + + Sbjct: 122 ITIASFLPSLLFGVAFGNIFKGIPMRNDFSASI-FAYDGSLLTLLNPYGLLTGILFVMLF 180 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 + G ++ +KT G + R+ R LW + +L A P+ Sbjct: 181 AVHGSLYAAIKTTGDLSQRAAAMANR---------------LWFPLLAVAVLFLGATYPA 225 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 L +N+++SP+L I PL+ LL + R R FL + L Sbjct: 226 TRL-----------YDNYLKSPLLLIIPLIAVSSLLLVKLYASRDRLHMAFLFSCLTIVF 274 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 V +T LFP ++PSS+ P S+LT+++S+SS LTL IM + LIF+PIV+ Y W Y Sbjct: 275 VCYTGVAGLFPNLIPSSIDPASNLTIYNSSSSLLTLKIMTGVALIFVPIVIAYKAWVYRI 334 Query: 361 MWGRMTTETLRRNEN 375 R+T+E + + Sbjct: 335 FRARVTSEDVLESSE 349 >UniRef50_D1BDL9 Cytochrome d oxidase cyd, subunit II n=2 Tax=Actinomycetales RepID=D1BDL9_SANKS Length = 368 Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 125/368 (33%), Positives = 209/368 (56%), Gaps = 37/368 (10%) Query: 3 DYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQV 62 D ETL+ +W++LI V+ +++ +GFD G+G L+P++ R + +RR++IN++G W+GN+V Sbjct: 2 DLETLQVLWFVLIAVLWTGYLVLEGFDFGVGMLMPILGRKEKDRRVMINTIGPVWDGNEV 61 Query: 63 WLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAG 122 WL+ AGGA FAA+P YA+ FSGFY+ + ++L L R + F+YR KI DA WR+ WDA Sbjct: 62 WLLTAGGATFAAFPEWYASLFSGFYIPLFIILICLIVRGMGFEYRSKINDATWRRRWDAS 121 Query: 123 LVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVIL 182 ++IGS +P +++G+AF NL+ GV + G F+ LL+PF LL G++++ + + Sbjct: 122 VIIGSWLPSILWGVAFANLVRGVEMDANHTM----TGGFFSLLSPFALLGGVVTMLLFLT 177 Query: 183 QGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNP 242 G V++ LKT G I +R++ + A + + + AG W L AQ A G + Sbjct: 178 HGAVFVALKTEGDIRVRAR---RLAGMFSVASVVAAGGW--------ALWAQLAYGTT-- 224 Query: 243 LMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVI 302 W W + + V++ R R GW F ++L + Sbjct: 225 -----------WT---------WGAVAVAAAALVAVVVSNARAREGWAFFWSALAILAAV 264 Query: 303 FTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMW 362 +++P VMP+S P +SL + +++S++ TL++M + L P+VLLY W+Y+ Sbjct: 265 VLIFGSMYPDVMPASNDPANSLNIRNASSTEYTLTVMTWVALFLTPLVLLYQSWTYWVFR 324 Query: 363 GRMTTETL 370 R+ T + Sbjct: 325 KRIGTHHI 332 >UniRef50_B7GK13 Cytochrome bd-type quinol oxidase, subunit 2 n=2 Tax=Bacillaceae RepID=B7GK13_ANOFW Length = 360 Score = 211 bits (537), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 130/369 (35%), Positives = 197/369 (53%), Gaps = 31/369 (8%) Query: 3 DYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQV 62 +E + IW+ L G+I ++ + DG+ +G G L P +ARN ER + +VG W GN+V Sbjct: 20 SHEMVAIIWFGLWGLIWTIYFVLDGYTLGTGMLFPFLARNRQERNQLQEAVGPFWGGNEV 79 Query: 63 WLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAG 122 WLI AGGA FAA+P VYA FS Y M+L+L +LFFR ++ K W+K W Sbjct: 80 WLITAGGATFAAFPAVYADLFSFLYTPMMLILFALFFRAAGLEFMHKDDAPLWQKSWKWA 139 Query: 123 LVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVIL 182 I S ++FG+AF NL G+ P Y G+F+ LL P+ LL GLL + + I+ Sbjct: 140 FTISSFALALLFGVAFANLFYGLKIG--PS---GYEGTFFSLLHPYGLLGGLLFISLFIV 194 Query: 183 QGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNP 242 G +W+ LK VG + R+ + AA++ + L FV A P Sbjct: 195 SGALWVMLKAVGEVAERAYAVARPAAIIATVILSLF----------FV-----ATSNRTP 239 Query: 243 LMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVI 302 L +NF ++P+LW+ P L F C LL ++ +++ R G F L F ++ Sbjct: 240 L-----------FHNFTKAPILWVVPALTFVCALLMLLFVWQKRIGLAFTNICLTIFTLM 288 Query: 303 FTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMW 362 T I +FP ++PS ++ S TL+++ S+L L IML + ++ +PIV+ Y LWSY Sbjct: 289 ATGFIGMFPNMLPSRINDEYSTTLFEAAGSELNLKIMLGVAIVMVPIVVGYQLWSYKLFK 348 Query: 363 GRMTTETLR 371 ++T ET + Sbjct: 349 EKITKETAK 357 >UniRef50_A8VUL7 Aspartate kinase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VUL7_9BACI Length = 339 Score = 206 bits (525), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 214/363 (58%), Gaps = 31/363 (8%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L+ IW++L+ V+++ + + DGFD+GIG L + + ++E+R +INS+G W+GN+VWL+ Sbjct: 3 LQLIWFILLAVLIIGYAVLDGFDLGIGTLFYQLGKTEEEKRTLINSIGPVWDGNEVWLLT 62 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADA-RWRKMWDAGLVI 125 GGALFAA+P VYA FSGFY+AM++VL L FR +A +Y K +D +++ +I Sbjct: 63 GGGALFAAFPFVYATVFSGFYLAMMVVLFGLIFRAVAVEYYFKCSDDPPMQRLMGKLFMI 122 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GSL+P ++FG+A GNL++G+P + Y +F+ LL P+ LL G++ L +LQG Sbjct: 123 GSLLPALLFGVAMGNLVIGIPM----DQNMNYTATFFHLLHPYALLIGVIGLVGFLLQGT 178 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 + LKT + R A K + L VM+ +L W+ +G V+ A P M Sbjct: 179 TYTILKTENALQRR---AIKFSKLFVMVLGVL---WI-LGTVATVIFA--------PHM- 222 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 NF P+L++FPLL +L +Y+ + FL +S++ + T Sbjct: 223 ---------FTNFTNQPLLFVFPLLTVVAIVLIPFFMYQKKYMAVFLSSSVIITSKLLTL 273 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 LFP ++ + P +SLT+++++SS+ TL++ML+I LI +P+V+ YT + Y+ G+ Sbjct: 274 AGGLFPNLV-TGADPATSLTIYNASSSEYTLTVMLIIALIGMPVVIGYTAFIYWHFRGKA 332 Query: 366 TTE 368 + E Sbjct: 333 SHE 335 >UniRef50_C1DWD8 Cytochrome D ubiquinol oxidase, subunit II n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DWD8_SULAA Length = 344 Score = 206 bits (523), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 132/366 (36%), Positives = 209/366 (57%), Gaps = 36/366 (9%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 TL IW+LL GV LV + ++DGFD+G G +L + + D+ RRI+ N++ W+GN+VWLI Sbjct: 8 TLEGIWFLLAGVFLVGYALTDGFDLGTG-ILTIFTKKDENRRILYNAIAPVWDGNEVWLI 66 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 GG LFAA+P VYAA+FSGFY+A++LVL +L R +AF+YR K WR WD I Sbjct: 67 AGGGMLFAAFPVVYAASFSGFYLAILLVLWALIGRAVAFEYRNKKETPLWRNTWDWIYWI 126 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 G+ VP ++FG+A GN ++GVP Y G F+ LL P PLL G ++ M ++ G Sbjct: 127 GNFVPALLFGVAVGNAVIGVPI----DQEGIYRGDFFTLLRPIPLLMGFVAAFMFLMHGS 182 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 +L KT G + +LA K A ++G G+V+ ++ LM Sbjct: 183 AYLLRKTEGEVF---ELAKKAA---------------YIGFFGYVITL----AITDFLMV 220 Query: 246 LVAVLPGAWMNNFVESPVLWIFP---LLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVI 302 +VA +N+ + P+ WI P ++G +++ + +G + ++ I Sbjct: 221 IVAPF---LYDNYFKYPLFWIAPAFIIIGLILYFKNLVSNNYDKVIYGSTLTTVGTVLTI 277 Query: 303 FTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMW 362 A +P +M SS++P +LT+W+S SS +TL++MLV+ ++ +PIV+ YT + Y Sbjct: 278 ALAS---YPVLMRSSLNPEYNLTIWNSASSHITLTVMLVVTILIMPIVIFYTTYVYRVFK 334 Query: 363 GRMTTE 368 G++++E Sbjct: 335 GKVSSE 340 >UniRef50_D1U471 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U471_9DELT Length = 350 Score = 204 bits (520), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 132/373 (35%), Positives = 200/373 (53%), Gaps = 46/373 (12%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW++L GV+ V+ I DGFD+G+G LLP +A+N+DE+R ++NS G W+GN+VWLI Sbjct: 15 LAVIWFVLWGVLWAVYFILDGFDLGVGTLLPFMAKNEDEKRAMLNSTGPFWDGNEVWLIT 74 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGG FAA+P YA FSG Y A++L+L +L R ++F++R K+ A WRK+WD +G Sbjct: 75 AGGVTFAAFPYAYAQMFSGLYTALMLLLFALIVRGVSFEFRSKVESASWRKLWDTCHAVG 134 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S +P ++ G+AF N+ G+P T + G LL P+ L G+L + + ++ G + Sbjct: 135 SFLPALLLGVAFANIFRGLPLDETGFSQAGLFG----LLNPYGLAGGVLFVIIFVMHGAL 190 Query: 187 WLQLKTVGVIHLRSQ-LATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 WL ++ G + R++ LA K + V+L L Y Sbjct: 191 WLCIRATGDLRARAEGLAVKLWPIQVVLTVLFLAY------------------------- 225 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGW-------GFLMASLMQ 298 + + +N+ PVL F +L L +M Y G W + Sbjct: 226 --SAVETQLFSNYFLYPVL--FVILALPVAGLVLMRAYMGAGKWWMAWGSSCLYIGGTAL 281 Query: 299 FGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSY 358 FGV AGI FP ++PS+ +P +SLT+ +S SS LTL IML +VL+FLP+++ Y W+Y Sbjct: 282 FGV---AGI--FPAIIPSNPNPGNSLTIMNSASSPLTLGIMLGVVLVFLPVIIGYQFWAY 336 Query: 359 YKMWGRMTTETLR 371 M E + Sbjct: 337 KTFATPMAKEDIH 349 >UniRef50_Q2IFY9 Cytochrome d ubiquinol oxidase, subunit II n=5 Tax=Bacteria RepID=Q2IFY9_ANADE Length = 349 Score = 196 bits (499), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 132/359 (36%), Positives = 209/359 (58%), Gaps = 30/359 (8%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW++L+GV++ + + DGFD+G+G +L L AR+++ER++ + ++G W+GN+VWL+ Sbjct: 3 LNVIWFVLVGVLIAGYAVLDGFDLGVG-VLSLFARDEEERQVHVKAIGPVWDGNEVWLLT 61 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GGALFAA+P VYA FSGFY+A++L+L +L R +A ++R ++ A WR+ +D +G Sbjct: 62 GGGALFAAFPVVYATVFSGFYLALMLLLLALIARAVALEFRSQLDGAAWRRGFDLAFGVG 121 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 SL+P V+ G+A GN+L GVP E+ GSF LL P+P+L GL+SL M L G + Sbjct: 122 SLLPAVLLGVAVGNVLRGVPVTAAQ----EWAGSFLGLLHPYPVLVGLVSLSMFTLHGAL 177 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 WL+LK G + R R LW +A A+ L++ Sbjct: 178 WLRLKAEGALEARMARWVPR---------------LWGAFAATYAIATAAS-----LVEA 217 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 + GA N + L + +G P+L+ RG G FL +SL +I A Sbjct: 218 PHLFAGALANPLFLALTLLVVASIG-AIPVLS----RRGAAGKAFLASSLAIVSMILVAA 272 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 +++FP ++PSS+ P LT+++++SS TL++MLVI L+ +P+V+ YT Y G++ Sbjct: 273 VSMFPRLVPSSIDPAYDLTVYNASSSPRTLAVMLVIALVGMPLVIAYTALVYRVFRGKV 331 >UniRef50_C9KPM5 Cytochrome D ubiquinol oxidase, subunit II n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPM5_9FIRM Length = 338 Score = 190 bits (483), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 122/368 (33%), Positives = 197/368 (53%), Gaps = 35/368 (9%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L +W++LI V+ F +GFD G+G LLP ++ +++ER ++ ++ W+GN+VW+I Sbjct: 4 LTILWFILITVLFTGFFFLEGFDYGVGGLLPFLSSDEEERGEILRTITPVWDGNEVWMIT 63 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGGALFAA+P VYA FS FY+A+ L+L +L R +AFD RG+ W++ WD + G Sbjct: 64 AGGALFAAFPHVYATMFSAFYLALFLMLVALILRGVAFDLRGRQESRCWKRFWDGAICFG 123 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S+VP ++G+A NL+ G+P ++ Y+G F+ LLTP+ ++ GL L + + G Sbjct: 124 SVVPAFLWGVAVTNLIAGLPI----NEKMIYMGGFFDLLTPYTIVGGLAFLFVFLFHGTA 179 Query: 187 WLQLKTVGV-IHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 +L L+ + LR Q + + ++ F+L D F + P+ Sbjct: 180 FLTLRLAKTSLILRCQEVALKTGAIAVIFFVLCMAMTLTYTDLF----------TKPVAA 229 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 + V FF + M + +G+ + A+++ V F A Sbjct: 230 VALVG------------------AALFFVMAMLSMKLGKGKASFLLSSAAIVATTVAFFA 271 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 G LFP +M SS++P SLT+ +++SS TLS+M V IF+PIVL+Y WSYY R+ Sbjct: 272 G--LFPRLMVSSLNPAWSLTITNASSSPYTLSVMTVAAGIFVPIVLIYQSWSYYIFRKRV 329 Query: 366 TTETLRRN 373 T + + Sbjct: 330 TAKDAEEH 337 >UniRef50_B4U7P7 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Aquificales RepID=B4U7P7_HYDS0 Length = 346 Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 131/364 (35%), Positives = 208/364 (57%), Gaps = 32/364 (8%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVI-NSVGAHWEGNQVWL 64 TL+ +W+L+ GV L+ + I+DGFD+G P++ + RI + NSV W+GN+VWL Sbjct: 10 TLQGLWFLIAGVFLIGYSITDGFDLG--SAFPMIFMKKEYDRIALYNSVAPVWDGNEVWL 67 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 I GG LFAA+P VYAA+FSGFY+A++LVL +L R +AF+YR K WR +D Sbjct: 68 IAGGGLLFAAFPTVYAASFSGFYLAILLVLWALIGRAVAFEYRNKRESMAWRHTFDFIYW 127 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQG 184 +G+++P ++FG+A GN ++GVP Y G+F+ LL P PL GL+S M + G Sbjct: 128 LGNVLPAILFGVAVGNAVVGVPI----DQDAVYHGTFFTLLRPVPLAMGLVSFFMFAMHG 183 Query: 185 GVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLM 244 +L LKT G + ++A K A++ V+ GY + V + L Q+A P + Sbjct: 184 AAYLLLKTEGSVF---EMAKKYASISVI------GYVISVILTN-ALAMQEA-----PFL 228 Query: 245 KLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFT 304 N+ P+L+ PL+ F +L V + G+ + L+ + Sbjct: 229 ----------YKNYFTYPILFAIPLMMFVGVVLYVSLLKSGKYEKMVYASGLVNAFTVLN 278 Query: 305 AGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 FP +M SS++P SLT+++++SS LTL++ML++ +IF+PIV+ YT ++Y G+ Sbjct: 279 VACASFPVLMRSSINPDYSLTVFNASSSTLTLTVMLIVTVIFMPIVIYYTRYAYKVFSGK 338 Query: 365 MTTE 368 ++ E Sbjct: 339 VSGE 342 >UniRef50_C8WK01 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Coriobacteriaceae RepID=C8WK01_EGGLE Length = 345 Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 133/366 (36%), Positives = 197/366 (53%), Gaps = 33/366 (9%) Query: 10 IWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGG 69 +W+LLI V++ + + DGFD+G G L P VA+ D+E+ +V S+G W+GN+VWL+ AGG Sbjct: 9 LWFLLIFVLIAGYFVLDGFDLGAGVLYPFVAKGDEEKAVVRTSIGPVWDGNEVWLLTAGG 68 Query: 70 ALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLV 129 ALFAA+P YA FSGFY+A++LVL L R ++ +YRG D +W K+WD +GSL+ Sbjct: 69 ALFAAFPAAYATTFSGFYLAVMLVLFGLIVRAVSLEYRG--IDHKWAKVWDGCFFVGSLL 126 Query: 130 PPVVFGIAFGNLLLGVPFAFTPQLRVEYLG-SFWQLLTPFPLLCGLLSLGMVILQGGVWL 188 P ++ G+A GN+ G+P + +Y G L+TPF LLCGLL L M + QG WL Sbjct: 127 PALLLGVAVGNIYAGIPMSANG----DYTGIPLLGLITPFTLLCGLLGLSMFLAQGASWL 182 Query: 189 QLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLA-QDANGPSNPLMKLV 247 LK L+++ A R L ++ L+V + + LL Q A +PL+ V Sbjct: 183 ALKAPKPSDLQARAAKLRFPLQIV------SLVLFVAVTAYALLGIQPAM---DPLLGAV 233 Query: 248 AVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGI 307 L A FV + V +F C L F+ S ++ Sbjct: 234 RWLLAAL---FVVAIVASVFFAKSKDCDL------------GAFIAQSGAAALLVLLLAA 278 Query: 308 TLFP-FVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 ++FP FV+ S+ S ++T + SS+LTL M +I + LP+VL+Y + Y GR+ Sbjct: 279 SMFPNFVVASADSVGPAITAMSAASSELTLMWMTIITCVGLPLVLVYHVIIYRTFRGRVK 338 Query: 367 TETLRR 372 E L Sbjct: 339 EEDLAH 344 >UniRef50_C0W2T5 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Actinomyces RepID=C0W2T5_9ACTO Length = 378 Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 125/395 (31%), Positives = 199/395 (50%), Gaps = 59/395 (14%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L +W++LI V+ + ++ +GFD G+G LL ++ RN+ ERR ++ ++G HW+GN+VWL+ Sbjct: 4 LSILWFILIAVLWIGYLTLEGFDFGVGMLLKILGRNEQERRAMMKTIGPHWDGNEVWLLT 63 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGGA FAA+P Y FSG Y+ + L+L L R A ++R KI +WR WD + Sbjct: 64 AGGATFAAFPEWYGTLFSGAYLVLFLILLCLIVRICAIEWRSKINSQKWRDNWDWAHTVS 123 Query: 127 SLVPPVVFGIAFGNLLLG-------------VPFAFTPQLRV------EYLGSFWQLLTP 167 + +P +++G AF NL+ G +P P + E G F+ LLTP Sbjct: 124 TWLPSILWGAAFANLVQGMKIEVVEVATGNVIPAENVPSETLLAGASHELTGGFFSLLTP 183 Query: 168 FPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGID 227 F +L GL++ + + G ++ LKT G + R++ +++A + L A + LW Sbjct: 184 FTILGGLVTCSLFLTHGALYTALKTAGDLSARAEAFARKSA--IASTALTAVWALW---- 237 Query: 228 GFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRP 287 LA N + WI L+ + +++ + GR Sbjct: 238 --AQLAYSLNA------------------------LAWIPLLVAAVFLIASLLMTWAGRQ 271 Query: 288 GWGFLMASLMQFGVIFTAGITLF----PFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIV 343 GW F + FG I A + +F P VM SS+ SLT+ + S +TL+IM V Sbjct: 272 GWAF----SLHFGGIAFAVVFIFSAMAPNVMRSSIDDSYSLTIAQAASDDVTLAIMTVAA 327 Query: 344 LIFLPIVLLYTLWSYYKMWGRMTTETLRRNENELY 378 +IF+P+VL YT+W Y R++ E + NE L+ Sbjct: 328 IIFVPVVLFYTIWGYKVFSKRVSAEKIDPNEGGLH 362 >UniRef50_B6WVU2 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WVU2_9DELT Length = 344 Score = 183 bits (465), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 125/373 (33%), Positives = 199/373 (53%), Gaps = 36/373 (9%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 ETL+ IW++L ++ V+ + DGFD+G+G LLP + N++ERRI+ N+ G W+GN+VWL Sbjct: 3 ETLQVIWFILWALLWAVYFVLDGFDLGLGSLLPFIGSNEEERRIMYNAAGPFWDGNEVWL 62 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 I AGG FAA+P+VYA FS Y ++++L +L FR ++F++RGK+ WR WD Sbjct: 63 ISAGGVTFAAFPKVYAVMFSALYAPLLILLFALIFRAVSFEFRGKVESGVWRGFWDLVHF 122 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQG 184 + +LVP ++ G+ F NL +G+P G+ L+ + + + L M +L G Sbjct: 123 LSNLVPSLLLGVTFANLFMGIPIDGEGVFH----GTLMGLVNGYGIAGAIFFLVMFMLHG 178 Query: 185 GVWLQLKTVGVIHLRSQLATKRAALL--VMLCFLLAGYWLWVGIDGFVLLAQDANGPSNP 242 +WL +K+ G + R A A LL VML L+A F++L N Sbjct: 179 SLWLAIKSQGELQTR---AVASATLLWPVMLILLVA----------FLVLTFFNTDLFN- 224 Query: 243 LMKLVAVLPGAWMNNFVESPVLWIFP-LLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 W N + + LLG C L RG+ ++ +++ GV Sbjct: 225 ---------NYWSNPLLLLLPVVALAGLLGVRCML------RRGQLWKAWMCSAVYIIGV 269 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 F + +FP ++ SS+ P ++LT ++++SS+LTL IML + L+ +PIVLLY W Y Sbjct: 270 TFFGVMGMFPRMLISSIDPTATLTAFNASSSELTLKIMLGVALVMVPIVLLYQFWVYRLF 329 Query: 362 WGRMTTETLRRNE 374 ++ E L+ Sbjct: 330 SHSLSAEDLKDEH 342 >UniRef50_D1BV47 Cytochrome d ubiquinol oxidase, subunit II n=7 Tax=Actinomycetales RepID=D1BV47_XYLCX Length = 362 Score = 177 bits (448), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 129/369 (34%), Positives = 197/369 (53%), Gaps = 43/369 (11%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVAR-----NDDERRIVINSVGAHWEGNQ 61 L +W++LI V+ +++ +GFD G+G LL + R DERR++IN++G W+GN+ Sbjct: 3 LSILWFVLIAVLWTGYLVLEGFDFGVGMLLSIFPRGTAKQKHDERRVLINTIGPVWDGNE 62 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWL+ AGGA FAA+P YA FSGFY+ ++L+L +L R +AF+YRGKIA A W + +D Sbjct: 63 VWLLTAGGATFAAFPEWYATLFSGFYIPLLLILVALIVRVVAFEYRGKIASAVWARRFDV 122 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 L IGS VP V++G+AF NL+ GV Q Y+G FW LL PF LL GL +L + + Sbjct: 123 LLQIGSWVPAVLWGVAFANLVRGVQLDVDHQ----YVGGFWALLNPFALLGGLTTLVLFL 178 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 L G V+L LKT G + LR++ AA L + ++AG W Sbjct: 179 LHGSVFLALKTDGELRLRAR---TFAARLSLAAVVIAGGW-------------------- 215 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 W W + C + V+ RGR W F ++++ Sbjct: 216 ----------AVWAQVAFSVTWTWAAVAVAALCLVGVVVTNARGRESWAFTLSAVAIVAA 265 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 + +++P VMP + SL++ ++S+ TL++M + +I P+V+ Y W+Y+ Sbjct: 266 VVLIFGSMYPDVMP-GLDGGPSLSIAAASSTPYTLTVMTWVAVILTPVVIAYQSWTYWVF 324 Query: 362 WGRMTTETL 370 R+TT L Sbjct: 325 RRRLTTSDL 333 >UniRef50_B2UM68 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UM68_AKKM8 Length = 345 Score = 177 bits (448), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 117/360 (32%), Positives = 195/360 (54%), Gaps = 32/360 (8%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L+ IW++L+GV+ + I DGFD+G G L L + D+ RR+ +N+VG W+GN+VWLI Sbjct: 10 LQIIWFILVGVLFSGYAILDGFDLGTGAL-QLFIKGDENRRLTLNAVGPVWDGNEVWLIT 68 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GGALFAA+P VYA+ FSGFY+A +L+L +L FR ++ ++R K WR+ WD I Sbjct: 69 GGGALFAAFPYVYASVFSGFYLAFMLLLLTLIFRAVSIEFRSKQPMKWWRRGWDTTFSIS 128 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 SL+ ++ G+A GN+ G+P + G+F LL P+ +L GL ++ + + GG+ Sbjct: 129 SLLAALLIGVAMGNVTKGIPL----DDHGNFTGTFLSLLNPYSILLGLTTVALFSMHGGI 184 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 +L +KT G + + + + ++ + +L G + + A +P + Sbjct: 185 YLLMKTQGSLQEQIRKLLRPCVIIFTVLIILHGAATLLYVPHVA-----AALERSPWIYG 239 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA- 305 +A L + +WIF I+R RPGW F+ AS G + Sbjct: 240 IAALA------VISIASIWIF--------------IHRNRPGWAFV-ASCSTMGCMMALF 278 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 G +FP ++ S +P SLTL + +S++ +L +M I ++ +P+VL Y+ Y+ G++ Sbjct: 279 GTAMFPNLLYSMPNPEHSLTLANGSSTRESLVVMTYIAILGVPLVLAYSAAIYWVFRGKV 338 >UniRef50_O67371 Cytochrome oxidase d subunit II n=1 Tax=Aquifex aeolicus RepID=O67371_AQUAE Length = 366 Score = 176 bits (447), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 120/388 (30%), Positives = 199/388 (51%), Gaps = 58/388 (14%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 E L IW++L+G I+ ++ DGFD+G+G + P +A++++E+RI++NS+G W+ N+VWL Sbjct: 2 ELLPVIWFVLLGFIIAMYAALDGFDLGVGIVYPFLAKDEEEKRILLNSIGPVWDANEVWL 61 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 ILAGGALFAA+P YA SG Y+ +IL+L L R + DYRGK+ +K D Sbjct: 62 ILAGGALFAAFPVAYATLQSGLYLPVILILFMLILRAIGIDYRGKMPTPALKKTMDMVFF 121 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQ---------------LRVEYLGSFWQLLTPFP 169 +GSL +FG+ GN++ G+P + Y G +L P+ Sbjct: 122 LGSLGVTFLFGLTLGNVIKGLPVKLVEKELYGEVVKTHMICADQDCSYTGLLINILDPYA 181 Query: 170 LLCGLLSLGMVILQGGVWLQLKTVGVI-HLRSQLATK---RAALLVMLCFLLAGYWLWVG 225 LL LL++ V + G ++ T G + H + LA K +ALL ++ +L + Sbjct: 182 LLVALLTVSFVAMHGAIYAAYVTNGDLSHRAASLAKKLWFNSALLYLIVHILTMIY---- 237 Query: 226 IDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCP--LLTVMAIY 283 +PL+ + N+ ++IFP L + ++A+ Sbjct: 238 ---------------HPLL----------IKNYFTR--MFIFPALPIVIVAFITIIVALN 270 Query: 284 RGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSV------SPISSLTLWDSTSSQLTLS 337 R + F ++ M F I A +++P ++PS +P+ S+T+++S SS+ TL Sbjct: 271 RQKYSLAFWSSTAMIFSAIGIAFASIYPTLVPSIYDENPFENPVHSITVFNSASSEKTLL 330 Query: 338 IMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 ML+I LI +P+VL Y + Y WG++ Sbjct: 331 TMLIIALIGVPMVLTYKFFVYRIFWGKV 358 >UniRef50_A5CR84 Cytochrome bd-type menaquinol oxidase subunit II n=4 Tax=Actinomycetales RepID=A5CR84_CLAM3 Length = 334 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 127/373 (34%), Positives = 203/373 (54%), Gaps = 45/373 (12%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW+ +I + V + + DGFD G+G LP +A++D +RR++IN++G W+ N+ WLI+ Sbjct: 3 LTLIWFGVIAFLFVGYFVLDGFDFGVGMSLPFLAKDDTDRRVLINTIGPVWDLNETWLIV 62 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AG ALFAA+P YA FSGFY+ ++ +L +L R ++F++R + A RWR +DA +V+G Sbjct: 63 AGAALFAAFPEWYATMFSGFYLLLLAILITLILRGVSFEFRHQGASDRWRGWFDAMIVVG 122 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S+VP ++G+ F N++ GVP +Y GS LL P+ LL GL +L + ++ G Sbjct: 123 SVVPSFLWGVVFANVVRGVPM----DRHHDYTGSTLDLLNPYALLGGLTTLSLFLVNGLQ 178 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 + LKT G I R++L + R + ++ + A + +W + + PS + L Sbjct: 179 FAALKTDGPIRARARLLSMRVGAVTIV--IAATFLVWTTL-------THGSAPSGLVSAL 229 Query: 247 VAV-LPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGF-LMASLMQFGV--I 302 AV L G+++ N RGR W F L+A+ + V + Sbjct: 230 AAVALVGSYLANV-------------------------RGRERWAFGLLAATIALAVASL 264 Query: 303 FTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMW 362 FTA L PFVMP+S LTL +++SS TL+IM LP++L Y W+Y+ Sbjct: 265 FTA---LHPFVMPASNDAAYGLTLENASSSPYTLTIMTWAAGFALPLILAYQAWTYWVFR 321 Query: 363 GRMTTETLRRNEN 375 R+T + + + Sbjct: 322 KRITRAVIAQAAH 334 >UniRef50_D0WHD0 Cytochrome D ubiquinol oxidase, subunit II n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WHD0_9ACTN Length = 354 Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 133/370 (35%), Positives = 199/370 (53%), Gaps = 32/370 (8%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW++LI V++ + + DGFD+G G L P VA+ D+E+ ++ SVG W+GN+VWL+ Sbjct: 4 LGIIWFILIFVLIAGYFVLDGFDLGAGVLSPFVAKTDEEKALLRRSVGPVWDGNEVWLLT 63 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGGALFAA+ YA FSGFY+A+ILVL L R ++ +Y W+K W+A +G Sbjct: 64 AGGALFAAFAPAYATTFSGFYLAIILVLMGLIVRAISLEYSANETKPGWKKAWNALFFVG 123 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLG-SFWQLLTPFPLLCGLLSLGMVILQGG 185 SL+P ++FG+A GN+ G+P +Y+G L+TPF LLCGLL L M ILQG Sbjct: 124 SLLPALLFGVAIGNVYAGIPM----NANGDYVGIPLLGLVTPFTLLCGLLGLSMFILQGA 179 Query: 186 VWLQLKTV--GVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPL 243 WL LK + +R+++A + A+L ++ F L V + V++ + G + L Sbjct: 180 SWLALKAPEGSAMAVRARMARRTFAILAIVFFAL------VTVYALVIIKPEMVGGLSIL 233 Query: 244 -----MKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQ 298 + VA+L +M E L +F C L + L ASL Sbjct: 234 RIAFAVLFVAMLAATFMKATDEKASLVVFLASSVACFALVAL-----------LGASLFP 282 Query: 299 FGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSY 358 V+ AG PF + ++ + +++T+ + S LTL+ ML I + LP VLLY Y Sbjct: 283 NLVVAGAGD---PFNLFATAASGANITIETAASEDLTLAWMLGITCVGLPFVLLYHFLVY 339 Query: 359 YKMWGRMTTE 368 G++T E Sbjct: 340 RTFAGKLTKE 349 >UniRef50_A7HAW4 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Bacteria RepID=A7HAW4_ANADF Length = 342 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 116/365 (31%), Positives = 187/365 (51%), Gaps = 30/365 (8%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L+ +W+ L+GV+L + + DGFD+G+G L L+AR D++RR+++NS+G W+GN+VWL+ Sbjct: 3 LQVLWFALLGVLLAGYAVLDGFDLGVGTLY-LLARRDEQRRVLLNSIGPVWDGNEVWLVT 61 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GGALFAA+PR YA FS Y +L++ +L FR +A ++R + WR WD Sbjct: 62 FGGALFAAFPRAYATTFSALYTPFMLLILALIFRAVAIEFRSRRPSRAWRTTWDVAFFAA 121 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S + P++FG A NL+ G+P + ++ LG LL+P+ LL G +L + L G Sbjct: 122 SALSPLLFGAAIANLMRGLPVRADGEAQIALLG----LLSPYALLVGAFTLSLFALHGAT 177 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 WL LKT G +H + AA + +LL + L Sbjct: 178 WLLLKTEGELHEDVRRWAWTAAGVFSTLYLL-----------------------TTIFTL 214 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 VA+ P A N E W+ +L A+Y R G F+ ++ ++ G Sbjct: 215 VAI-PRA-TANLAELRWGWVVVVLNVLAAGNVPRAVYLRRYGQAFVSSAATIVALVVLFG 272 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 + +P ++ S++ P S+T+ + +S+ TL M +I + +P VL YT Y+ G++ Sbjct: 273 LAQWPNLVTSTLDPAFSITIRNGSSTAPTLRNMAIIAAMGMPFVLGYTGLIYWVFRGKVR 332 Query: 367 TETLR 371 R Sbjct: 333 EGEHR 337 >UniRef50_A7ZAA3 CydB n=16 Tax=Bacillales RepID=A7ZAA3_BACA2 Length = 338 Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 109/370 (29%), Positives = 189/370 (51%), Gaps = 46/370 (12%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 +L +W++L+ V+ V F +GFD G+G + N+ ERR+++N++G W+ N+VWLI Sbjct: 3 SLHDLWFILVSVLFVGFFFLEGFDFGVGISTRFLGHNELERRVLVNTIGPFWDANEVWLI 62 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 GA+FAA+P YA SG+Y+ I++L +L R +AF++RG++ + +W K WD + Sbjct: 63 TGTGAIFAAFPNWYATMLSGYYIPFIIILLALMGRGVAFEFRGQVNNLKWVKTWDWVIFF 122 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GSL+PP VFG+ F +L GVP + F ++ + +L G + L G Sbjct: 123 GSLIPPFVFGLIFTSLFRGVPI----DGHMNIHAGFSDIVNVYSVLGGAAVTLLSFLHGL 178 Query: 186 VWLQLKTVGVIHLRSQLATKRAA----LLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 +++ L+T+G + R++ KR L+V+ F ++ Y D F A + Sbjct: 179 MFITLRTIGDLQERARKMAKRVIGVIFLVVLAFFAMSAY----DTDMFTRRAN----ITI 230 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMAS---LMQ 298 P+ L+ + C +L ++ + + + GW F M + Sbjct: 231 PVFVLIVI------------------------CNVLAIVFMSKKKDGWAFGMTGAGLALT 266 Query: 299 FGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSY 358 +IF I+LFP VM SS+ LT+ +++S +L +M ++ L LP V+ +WSY Sbjct: 267 VAMIF---ISLFPRVMVSSLKSAYDLTVANASSGDYSLKVMTIVALTLLPFVIGSQIWSY 323 Query: 359 YKMWGRMTTE 368 Y R++ + Sbjct: 324 YVFRKRVSHK 333 >UniRef50_Q46G86 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Methanosarcina RepID=Q46G86_METBF Length = 347 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 116/382 (30%), Positives = 201/382 (52%), Gaps = 39/382 (10%) Query: 1 MFDYET---LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHW 57 MFD+ T L IW+ L VI V+ I D F +G G L+P +A + +R + +SVG W Sbjct: 1 MFDFLTHDMLAIIWFFLWCVIWGVYFIVDSFSLGAGLLVPFIATDKAQRMQIQSSVGPFW 60 Query: 58 EGNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRK 117 GN+VWLILA G FAA+P V++ F+ Y+ M+L+L L R ++ +Y K + +K Sbjct: 61 GGNEVWLILAAGGTFAAFPLVFSKMFTFLYLPMMLLLIGLIARGISIEYLHKDENPHIQK 120 Query: 118 MWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSL 177 + G GSL+ +V G+AF N G+ A Y+G+ L +P+ L+ G+L + Sbjct: 121 ILMWGWFAGSLLISLVLGVAFANFFKGLEIASGGV----YIGTLIGLFSPYALIGGVLFV 176 Query: 178 GMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDAN 237 M + G W+ +KT G I +++ K++AL+V++ L+ + ++GI+GF Sbjct: 177 LMSVTSGAFWINVKTEGAIAIKAGDLAKKSALIVLVLALVYLAYSFMGIEGFT------- 229 Query: 238 GPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLM 297 N+ P L++ P L +L V + R F ++L+ Sbjct: 230 ------------------TNYSAMPALYLLPGLAVVTAVLAVFFAKKDRIFPAFC-SNLL 270 Query: 298 QFGVIFTAGI-TLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLW 356 F + +G+ +++P+++ SSVS + ++++ SS +TLS+ML L+F+PI+++Y LW Sbjct: 271 AFLFVVESGLASIYPYMLKSSVSSEYGIDIFEAASSHMTLSVMLGGALVFVPIIIIYQLW 330 Query: 357 SYYKMWGRMTTETLRRNENELY 378 +Y + E ++ + Y Sbjct: 331 AY-----TLFREKIKETDQVEY 347 >UniRef50_C2C3U7 Cytochrome bd ubiquinol oxidase subunit II n=2 Tax=Listeria RepID=C2C3U7_LISGR Length = 350 Score = 167 bits (423), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 111/366 (30%), Positives = 191/366 (52%), Gaps = 38/366 (10%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 +L +W+LL+ V+ + F +GFD G+G +A++ +ER++++N++G W+ N+VWLI Sbjct: 15 SLNELWFLLVAVLFIGFFFLEGFDFGVGMATRFLAKSSNERKMLVNTIGPFWDANEVWLI 74 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 AGGA+FAA+P YA FSG+Y+ +++L +L R ++F++RG+ W K WD + Sbjct: 75 TAGGAIFAAFPNWYATMFSGYYLPFVVLLLALIGRGVSFEFRGQKDTKTWLKTWDWIIFF 134 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GSL+PP + G+ F L G+P L G F + F + G+ + + +L G Sbjct: 135 GSLLPPFLLGVLFSTLAKGMPIDKEMNLH----GGFTDYVNIFSVWGGITIVLICLLHGL 190 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 ++ L+ G + +R+ K+ ++ L+ FV LA Sbjct: 191 QFIALRVEGELRIRATKLAKKVWFATVVALLI-----------FVALAFVYTDLFTARPV 239 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 LV ++ G V+ + L GFF +++GR F L G++FT Sbjct: 240 LVPLMIGL---------VVVFYLLSGFF--------LWKGREILTFTFGGL---GIVFTV 279 Query: 306 G---ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMW 362 G + LFP VM SS++ +LT++++ S +LS+M ++ + LP VL Y +WSYY Sbjct: 280 GAIFVGLFPRVMISSITEAYNLTIYNAASGHYSLSVMTIVAVTLLPFVLGYQIWSYYVFR 339 Query: 363 GRMTTE 368 R++ + Sbjct: 340 KRVSDK 345 >UniRef50_B9P917 Predicted protein n=7 Tax=cellular organisms RepID=B9P917_POPTR Length = 462 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 82/148 (55%), Positives = 107/148 (72%) Query: 20 VVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVY 79 + F ++DGFD+G LLPL AR D ERR+VINS+G WEGNQVWLIL GGA+FAAWP++Y Sbjct: 234 IAFAVTDGFDLGAAALLPLAARTDVERRVVINSLGPVWEGNQVWLILGGGAIFAAWPQLY 293 Query: 80 AAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFG 139 A +FSGFY+AM L +L RP+AF +R K + WR WDA L + +VP ++FG+A G Sbjct: 294 AVSFSGFYLAMFAALVALILRPVAFKFRSKREEPAWRARWDAVLCMAGVVPALIFGVALG 353 Query: 140 NLLLGVPFAFTPQLRVEYLGSFWQLLTP 167 N+L GVPF P +R+ Y G+F+ LL P Sbjct: 354 NVLQGVPFRLAPDMRIYYEGTFFGLLNP 381 >UniRef50_Q816N2 Cytochrome d ubiquinol oxidase subunit II n=73 Tax=Bacillus RepID=Q816N2_BACCR Length = 345 Score = 163 bits (412), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 111/372 (29%), Positives = 178/372 (47%), Gaps = 37/372 (9%) Query: 3 DYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQV 62 ++ L IW+ L GVI V+ I DG+ +G G + P V ++ ER + ++G W GN+V Sbjct: 5 SHDMLAIIWFGLWGVIWTVYFILDGYALGNGMIFPFVTKDRQERNQLQEAIGPFWGGNEV 64 Query: 63 WLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAG 122 WLI AGGA FAA+P YA FS Y + LVL +LF R ++ K W+K Sbjct: 65 WLITAGGATFAAFPVTYANMFSYLYTPLFLVLLALFARAAGLEFMHKDDSPIWQKTCKWA 124 Query: 123 LVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVIL 182 IGS + +FG+ F NL G+ + Y G+ LL + +L GL + ++ Sbjct: 125 FAIGSFLIAFLFGVTFANLYYGLQIG-----KNGYEGNLLSLLNHYGILGGLFFTAIFVV 179 Query: 183 QGGVWLQLKTVGVIHLRSQLATK---RAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGP 239 G +W+ +KT G + R+ + AA +++ F +V A N Sbjct: 180 SGALWVMIKTTGEVSDRAYKIARPFSMAAAIILAIF-------------YVATANRTN-- 224 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299 NF E PVL+I P+L +L ++ +Y+ + G F L Sbjct: 225 --------------LFQNFTEYPVLFILPVLAMLMSVLALIMVYKHKIGLAFTFVCLTIA 270 Query: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359 + T +FP ++PS ++ S TL+++ SQL L IM + ++ +PIV+ Y LWSY Sbjct: 271 MFMTTGFAGMFPRMLPSRINDAYSTTLYNAAGSQLNLKIMFFVAMVMVPIVIGYQLWSYS 330 Query: 360 KMWGRMTTETLR 371 ++ ++ + Sbjct: 331 IFKNKIHKDSAK 342 >UniRef50_D1A2D3 Cytochrome d ubiquinol oxidase, subunit II n=34 Tax=Bacteria RepID=D1A2D3_THECD Length = 363 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 90/200 (45%), Positives = 133/200 (66%), Gaps = 11/200 (5%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPL-----VARNDDERRIVINSVGAHWEGNQ 61 L +W+LLI V+ + + +GFD G+G L+P+ A +D +RR++IN++G W+GN+ Sbjct: 3 LTTVWFLLIAVLWAGYFLLEGFDFGVGVLMPVLAPRKAAHSDTDRRVMINTIGPVWDGNE 62 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWL++AGGA FAA+P YA+ FSGFY+A++L+L +L R +AF+YRGK+ RWR+ WD Sbjct: 63 VWLLVAGGATFAAFPEWYASLFSGFYLALLLILAALIVRGVAFEYRGKVDSDRWRRNWDL 122 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 + GS VP +++G+AF N+L GVP + Y G+ LL P+ LL GL +L + Sbjct: 123 AIFWGSAVPALLWGVAFANILQGVPL----DAQHHYTGTLLTLLNPYALLGGLTTLTVFT 178 Query: 182 LQGGVWLQLKTVGVIHLRSQ 201 L G V+L LKT G H+R Q Sbjct: 179 LHGAVFLALKTRG--HVRDQ 196 Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 50/87 (57%) Query: 284 RGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIV 343 RGR GW F ++ + T L+P V+PS++ P SLT+ ++ S+ TL +M + Sbjct: 248 RGRDGWAFTGTAVAIVATVATMFGDLWPAVLPSTIDPAYSLTVENAASTPYTLKVMTWVA 307 Query: 344 LIFLPIVLLYTLWSYYKMWGRMTTETL 370 +IF PIVL Y W+Y+ R+T E + Sbjct: 308 VIFTPIVLAYQAWTYWVFRKRLTREAI 334 >UniRef50_C8XGP9 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGP9_NAKMY Length = 338 Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 124/364 (34%), Positives = 193/364 (53%), Gaps = 37/364 (10%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 TL +W++++ F + +GFD G+G L +V R D ERR+ INS+G W+GN+VWLI Sbjct: 2 TLPTVWFVIVAFFWTGFFVLEGFDFGVGALHKVVGRTDTERRVAINSIGPFWDGNEVWLI 61 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 +AG ++FAA+P YA+ FS Y+A+ L+L +L R ++F++RGK A WR W L + Sbjct: 62 VAGASMFAAFPNWYASWFSALYLALWLLLAALIVRGVSFEFRGKFAAPAWRHTWGWTLTV 121 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GS++ P++ GI G+LL G+P ++ GSF LLTPF LL GL L + +L G Sbjct: 122 GSVLAPLLIGIGLGDLLAGLPI----DAAGDFTGSFLDLLTPFGLLLGLTLLTLSLLHGA 177 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 +L L+T G + RS+ +R AL + L+A W+ V+LA Sbjct: 178 AFLTLRTTGPVLERSRALVRRLALPAVALVLVAAVWM-------VVLAA----------- 219 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 PG W ++ + + + GR G +A+ + G + A Sbjct: 220 -----PGGWG---------YLAVAVPAVAVIAAAVTALPGRAGPATFVATAISIGALVAA 265 Query: 306 -GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 + L+P ++ S+ P SLT+ +S SS +L +M V + P+VLLY W+Y+ R Sbjct: 266 LFVCLYPTLLVSTTDPAYSLTVTNSASSPYSLQVMTVAAAVLTPLVLLYQGWTYWVFRRR 325 Query: 365 MTTE 368 + TE Sbjct: 326 LRTE 329 >UniRef50_C7M6E4 Cytochrome d ubiquinol oxidase, subunit II n=7 Tax=Bacteroidetes RepID=C7M6E4_CAPOD Length = 344 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 102/358 (28%), Positives = 174/358 (48%), Gaps = 30/358 (8%) Query: 11 WWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGA 70 W+++IG ++ + I DGFD G G L ERR+ +N++G W+GN+ WL++ G Sbjct: 13 WFIIIGFLITGYAILDGFDFGAGAW-HLFFDKKKERRVALNAIGPVWDGNEAWLVIGGAG 71 Query: 71 LFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVP 130 +FA +P +YA FS +L L + FR +A + RGK RWR WD + S+V Sbjct: 72 IFAGFPLMYAELFSAMNTPFMLFLTFIIFRAVAIEVRGKEDSDRWRNTWDTVYSVCSIVL 131 Query: 131 PVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQL 190 PV+ G+ N+L G+P Q G+ + LTP+ LL G+++L + ++ GG++L L Sbjct: 132 PVLLGVVIANVLQGLPLDENFQYTG---GALFTFLTPYALLVGVMTLLLFMVHGGLYLLL 188 Query: 191 KTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVL 250 KT G +H R + A L ++ F + + ++L Sbjct: 189 KTHGDMHHRIEKRINYAYLGFLVVF--------------------------TAVAIYSML 222 Query: 251 PGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLF 310 N + L +FP L L + + F+ L + A + L Sbjct: 223 TPHLAENIANNTALKVFPALLLLSILSVAFFMKKKDYKKAFVGTILTIVFFMVVAALNLH 282 Query: 311 PFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTE 368 P + +++ +S+T++++ +SQ +L IML I I P++LLYT ++Y WG++ + Sbjct: 283 PTFLRTTLETGNSITVYNAAASQKSLKIMLTITAIGAPLLLLYTYFAYKVFWGKVEID 340 >UniRef50_P94365 Cytochrome d ubiquinol oxidase subunit 2 n=76 Tax=Bacillales RepID=CYDB_BACSU Length = 338 Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 104/366 (28%), Positives = 180/366 (49%), Gaps = 38/366 (10%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 +L +W++L+ V+ V F +GFD G+G + N+ ERR++IN++G W+ N+VWL+ Sbjct: 3 SLHDLWFILVAVLFVGFFFLEGFDFGVGMATRFLGHNELERRVLINTIGPFWDANEVWLL 62 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 GA+FAA+P YA SG+Y+ ++VL +L R +AF++RGK+ +W K+WD + Sbjct: 63 TGAGAIFAAFPNWYATMLSGYYIPFVIVLLALMGRGVAFEFRGKVDHLKWVKVWDWVVFF 122 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GSL+PP V G+ F L G+P + + + +L G+ + G Sbjct: 123 GSLIPPFVLGVLFTTLFRGMPIDADMNIHAHVS----DYINVYSILGGVTVTLLCFQHGL 178 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 +++ L+T+G + R++ ++ +V + L D F + + PL Sbjct: 179 MFITLRTIGDLQNRARKMAQKIMGVVFVAVLAFAALSAYQTDMFTRRGE----ITIPLAV 234 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMAS---LMQFGVI 302 L+ + C +L + I + + GW F M + G+I Sbjct: 235 LIVI------------------------CFMLAAVFIRKKKDGWTFGMTGAGLALTVGMI 270 Query: 303 FTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMW 362 F I+LFP VM SS+ LT+ +++S +L +M + L LP V+ +WSYY Sbjct: 271 F---ISLFPRVMVSSLHSAYDLTVANASSGDYSLKVMSIAALTLLPFVIGSQIWSYYVFR 327 Query: 363 GRMTTE 368 R++ + Sbjct: 328 KRVSHK 333 >UniRef50_Q6ABD4 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Propionibacterium acnes RepID=Q6ABD4_PROAC Length = 357 Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 120/375 (32%), Positives = 186/375 (49%), Gaps = 42/375 (11%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 + L +W++LI V+ V F +GFD G+ LLP + R+D +RR+++N++G W+GN+VW Sbjct: 10 HSPLTIVWFVLITVLWVGFFFLEGFDFGVAMLLPFLGRDDKDRRLMVNTIGPTWDGNEVW 69 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L+ AGGA FAA+P YA FSG Y+ ++LVL L R +AF+YR K + WR +D Sbjct: 70 LLTAGGATFAAFPGWYATMFSGLYLPLLLVLLGLIVRGVAFEYRSKNPSSSWRNAFDWMA 129 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFA--FTPQLRVEYL--GSFWQLLTPFPLLCGLLSLGM 179 IGS +P +V G+ F N + G+ TP L SFW L TPF L+ G+L + + Sbjct: 130 TIGSFLPTLVLGVGFANFVRGLAVGPHSTPDGGTAPLVTTSFWGLFTPFALIGGILFVVL 189 Query: 180 VILQGGVWLQLKTVGVIHLRSQLATKR---AALLVMLCFLLAGYWLWVGIDGFVLLAQDA 236 G ++ LKT+G +H R++ + + A +V L + L ++V DG +L Sbjct: 190 FCAHGANFVALKTMGDMHDRARKTSAKLGWIATVVALVWALMFNIMYVTRDGRQVLT--- 246 Query: 237 NGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASL 296 WI LL + +GR G FL +L Sbjct: 247 ----------------------------WIICLLVVVLLAAGSAVVAKGREGLAFLCTAL 278 Query: 297 MQFGVIFTAGITLFPFVMPSSVSPIS-SLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTL 355 G+ +F P + +W ++++ TL IM + +F+PIVL Y + Sbjct: 279 ---GIALMIVACMFAMYGNLGYRPSGIAFDMWIASATGRTLKIMTISACVFVPIVLAYQV 335 Query: 356 WSYYKMWGRMTTETL 370 WSY+ R+T E + Sbjct: 336 WSYWVFRKRLTREAI 350 >UniRef50_A0LSG2 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSG2_ACIC1 Length = 348 Score = 160 bits (405), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 119/371 (32%), Positives = 182/371 (49%), Gaps = 37/371 (9%) Query: 3 DYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQV 62 + L W+ LIG++ ++ +GFD G+ + PLV++++ +RR+ +NSVG W+GN+V Sbjct: 2 SFGVLDTTWFSLIGLLWAGYLFLEGFDFGVALITPLVSKDEIDRRMCLNSVGPFWDGNEV 61 Query: 63 WLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAG 122 WLI+AGGA FAA+P YA FSGFY+A+ L+L +L R ++F++R K WR+ WD Sbjct: 62 WLIVAGGATFAAFPLWYARLFSGFYLALFLILLALIARGVSFEFRNKDHRPAWRRTWDWA 121 Query: 123 LVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVIL 182 +GSL+PP V+G+AF NL++G+P Y G LL P +L G ++ +V Sbjct: 122 NFLGSLIPPAVWGVAFTNLVVGLPL----DSGGVYRGGLAGLLHPIAVLGGAATVALVSF 177 Query: 183 QGGVWLQLKTV-GVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 G +L LKT G+ H +A +L G V+LA Sbjct: 178 HGANFLLLKTSSGLAHRTRSVAVPLGVAATLLT-------------GAVVLA-------- 216 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMAS---LMQ 298 VA+ G + + V + G + R R G F L+ Sbjct: 217 -----VALTRGKALPEALPGVVPLAMAVAGVAGVAAGTFLVARARDGAAFAATGGSLLLT 271 Query: 299 FGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSY 358 G +F +FP V P P S+T+ + S TL +M ++ IF P+VL Y W+Y Sbjct: 272 MGAVFA---RMFPTVFPDFHHPAHSVTIAAAASGHYTLVVMTIVAAIFTPLVLAYQGWTY 328 Query: 359 YKMWGRMTTET 369 + R+ T Sbjct: 329 WVFRRRLMRPT 339 >UniRef50_Q0YUS4 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YUS4_9CHLB Length = 331 Score = 160 bits (404), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 196/372 (52%), Gaps = 56/372 (15%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW++ I ++ + + +GFD G G LLP + +D ERR VIN++G W GN+VWL+ Sbjct: 3 LHSIWFIFIALLFTILFLLEGFDFGTGILLPFMGSDDRERRSVINTIGPFWLGNEVWLVS 62 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGGA+FAA+P YA+ SGFY +L+L SL FR AF++R K ++ +++ + + G Sbjct: 63 AGGAMFAAFPGWYASLLSGFYPLFLLMLLSLIFRGAAFEFRSKFSNPALKRVSEWIIFGG 122 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 SLVP +++G+ N + GVP Y G+ +LL PF L G S L G + Sbjct: 123 SLVPALLWGVILSNFISGVPV----DASGNYTGALSKLLNPFALAGGAASALTFTLYGAL 178 Query: 187 WLQLKTVGVIHLRSQLATKR----AALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNP 242 +L LKT G + R+ K+ A L +M+C + Sbjct: 179 FLSLKTSGRVKERAIGIAKKLWAPATLSLMVCIACS------------------------ 214 Query: 243 LMKLVAVLPG--AWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 + + ++ PG ++ +PV ++ + + R G F+M +L Sbjct: 215 -VTVTSIKPGILPLLSLLSLAPV---------------IVLLQKNRSGVAFIMTAL---A 255 Query: 301 VIFTA---GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWS 357 +IFTA L+P V+ S+++P SLT+++++SS+ TLSI+ V+ LIF P+V++ S Sbjct: 256 IIFTALAIFTNLYPRVLVSNLNPAWSLTIYNASSSEYTLSILTVVALIFTPLVIIAQCLS 315 Query: 358 YYKMWGRMTTET 369 Y+ R++T++ Sbjct: 316 YWVFRERVSTDS 327 >UniRef50_C2KPN0 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Mobiluncus RepID=C2KPN0_9ACTO Length = 387 Score = 157 bits (397), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 118/401 (29%), Positives = 196/401 (48%), Gaps = 74/401 (18%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L+ +W++L+ V+ ++I +G+ +G G L+ ++ ++D ER ++ S+G HW+GN+VWL+ Sbjct: 5 LQILWFILVAVLWAGYLILEGYGLGTGMLMRIIGKSDTERGQIVRSIGPHWDGNEVWLLT 64 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGGA FA+ P YA FSG Y+A+ L+L L R A ++R K+ WR WD G I Sbjct: 65 AGGATFASSPEWYAVMFSGMYLALFLILVCLIVRISAIEWRNKVDSESWRNKWDWGHTIS 124 Query: 127 SLVPPVVFGIAFGNLLLGV---------PFAFTPQLRV------------------EYLG 159 + + P++ G AFGNL+ G+ PF P + + L Sbjct: 125 AWLVPILLGTAFGNLVSGMMIAVVDPKQPFTPIPPDEIDPSKHVHNLIGLGDMPLGQLLS 184 Query: 160 SFWQLLTP----FPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQ-LATKRAALLVMLC 214 F+ + +P F LL GL+ + + QG ++L LKT + RS+ LA K A + L Sbjct: 185 LFYNVPSPINGVFNLLGGLVIASLCLTQGALFLSLKTTDEVRERSEALAPKLALVSTALT 244 Query: 215 FLLA--GYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGF 272 + A G + ++G GF+ IF ++ Sbjct: 245 AVFAIWGTFAYMG-AGFIFAL--------------------------------IFLVIAA 271 Query: 273 FCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG---ITLFPFVMPSSVSPIS-SLTLWD 328 C ++ + ++ G F+ S GV F +FP+VM SS++ SLT+W+ Sbjct: 272 VCLIVGLFFAFQRSIGKAFIFNSA---GVAFAVAWVFAMIFPYVMKSSINTEKYSLTIWE 328 Query: 329 STSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTET 369 S+++ T +M + +I +P+VL YT+WS Y R++ T Sbjct: 329 SSATPGTQIVMTIAAVILVPVVLGYTIWSVYMFRSRISPGT 369 >UniRef50_Q67RR5 Cytochrome D ubiquinol oxidase subunit II n=2 Tax=Bacteria RepID=Q67RR5_SYMTH Length = 342 Score = 157 bits (397), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 121/378 (32%), Positives = 189/378 (50%), Gaps = 53/378 (14%) Query: 3 DYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQV 62 +E L+ IW+ L G++ ++ DGFD+G G +L + R D+E+ +I S+ W+GN+V Sbjct: 2 SHELLQVIWFALWGLLWAIYFGLDGFDLGSG-MLAGIFREDEEQHHLIGSLAPIWDGNEV 60 Query: 63 WLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFD-YRGKIADARWRKMWDA 121 W+I AGG FAA+P++YA FS Y+ + ++L L FR +A + Y DA W+K+W Sbjct: 61 WVITAGGVTFAAFPKLYATMFSSLYLPLFIILFGLMFRAVAIEFYHHMDYDAGWQKIWGW 120 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 L + S + +FG+AFGN+ G+ Y G+ LL P+ LL G+L + + Sbjct: 121 VLSVASFLVAFLFGVAFGNIFQGMLLD-----AQGYHGTVLSLLNPYGLLTGVLFVVAFL 175 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 + G WL K DGF A+ + Sbjct: 176 MNGASWLAHKAPD--------------------------------DGF---RAKADTFAK 200 Query: 242 PLMKLVAVLPGAW----------MNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGF 291 + V V+ AW M N+++ P L++ P L +LT + + +GR Sbjct: 201 RMWPAVLVVAAAWLVYTPFATRLMENYLKVPALFVVPALAVVLLVLTRVYLEKGRHALAL 260 Query: 292 LMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVL 351 LM SL + A I LFP + PS + P SLT ++S+SS TL M +V++FLP VL Sbjct: 261 LMGSLTVGITVVAAVIGLFPNMFPSRIDPAYSLTAFNSSSSHYTLQFMFWVVVVFLPFVL 320 Query: 352 LYTLWSYYKMWGRMTTET 369 LY +W+ Y+++GR T + Sbjct: 321 LYQIWA-YRLFGRQGTGS 337 >UniRef50_Q6MAP6 Putative cytochrome bd-I oxidase subunit II n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MAP6_PARUW Length = 310 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 99/335 (29%), Positives = 168/335 (50%), Gaps = 30/335 (8%) Query: 35 LLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVL 94 +L L A+ D ERR+++NS+G W+GN+VWL+ AGGALFA +P +YA S FYV ++ +L Sbjct: 1 MLHLFAKKDIERRVMLNSIGPVWDGNEVWLVTAGGALFAGFPDIYATMLSAFYVPVMALL 60 Query: 95 CSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLR 154 +L FR +A ++R K A WR WD +GSL+ + G+ GNL+ G+ Sbjct: 61 SALIFRAVAIEFRSKKQMAWWRWTWDIAFSLGSLMIAFILGLVMGNLIRGMQLDGYK--- 117 Query: 155 VEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLC 214 E++G LL P+ LL G +++ + ++ G +++ +KT G H R ++ + ++ Sbjct: 118 -EFIGQLEDLLQPYALLVGGMTVFLFLMHGSIYILMKTEGEFHDRMRMKAVSCIIFFIIT 176 Query: 215 FLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFC 274 + + M + +P + F +P +I L+ Sbjct: 177 YAITT------------------------MATLIYMPH-MIEAFRHNPFFFIIALINLLA 211 Query: 275 PLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSP-ISSLTLWDSTSSQ 333 IY G+ F+ + L ++ I +P V+ S P + SLT+++S SS Sbjct: 212 IANIPREIYFGKDSRAFICSCLNIICLLALYAIGTYPNVIRSIDQPDVLSLTIYNSASSV 271 Query: 334 LTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTE 368 TL I+ +I LI +P+V+ YT YY G++ + Sbjct: 272 KTLEILFLIALIGVPLVIAYTTAIYYIFRGKVKID 306 >UniRef50_A5FA89 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Bacteroidetes RepID=A5FA89_FLAJ1 Length = 358 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 113/385 (29%), Positives = 192/385 (49%), Gaps = 61/385 (15%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 + F W++++ IL V+++ DG+D G G + A + +++ + +++G W+ N+VWLI Sbjct: 1 MEFFWYVVLMGILAVYLVLDGYDFGAGIIHLFFADTEKDKKAITSAIGPFWDANEVWLIA 60 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGG LF A+P +YA++FSGFY+ +I++L L FR + + RG+I + W +WD I Sbjct: 61 AGGVLFFAFPTLYASSFSGFYLPLIMILWLLIFRAIGLEMRGQIHNPMWESIWDKAFGIA 120 Query: 127 SLVPPVVFGIAFGNLLLGVPFA----------------------FTPQLRVEYLGSFWQL 164 SL+ + FGIA GN++ GV F+PQ LG + Sbjct: 121 SLLLALFFGIALGNIVRGVNLGMVQNGVSTQEPHFFFLPLWNPTFSPQ--ANELG----I 174 Query: 165 LTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIH--LRSQLATKRAALLVMLCFLLAGYWL 222 + F L G++S+ + + G W+ KT ++ L+ + LLV++C L + Sbjct: 175 IDWFTLFLGIVSVVALTIHGANWIIYKTNSSLNPKLKKVVFVLNIVLLVLVCISLQ---I 231 Query: 223 WVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGF--FCPLLTVM 280 W I+ P +NFVE+P+LW FPLL F L V Sbjct: 232 WHFIE------------PKPF------------HNFVENPILWFFPLLTFVGIAGLFKVR 267 Query: 281 AIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIML 340 + + G GF+ ++L G + +++FP V+PS+ SLT++++ + + LS L Sbjct: 268 SF--KKDGHGFIFSTLFLVGGFASTAVSIFPNVLPSTNKVNPSLTIYNTAAHEYGLSAGL 325 Query: 341 VIVLIFLPIVLLYTLWSYYKMWGRM 365 I L +V++Y + Y G+M Sbjct: 326 SWFFIALFLVIIYFIIQYRVFSGKM 350 >UniRef50_Q255C4 Cytochrome D oxidase subunit II n=14 Tax=Chlamydiaceae RepID=Q255C4_CHLFF Length = 353 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 105/355 (29%), Positives = 177/355 (49%), Gaps = 22/355 (6%) Query: 11 WWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGA 70 W+ ++ V + + + DGFD+G+ + ++R D+ERR+++NS+G W+GN+VWLI+ G Sbjct: 13 WYAILVVAVFAYSLGDGFDLGLSTIY-FISRADEERRVLLNSIGPVWDGNEVWLIIIFGG 71 Query: 71 LFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVP 130 LFA +P Y A S FY+ + ++ FR + ++R K +W+ WD + + Sbjct: 72 LFAGFPSAYGALLSIFYMPIWTLVLLYIFRGCSLEFRSKAESTKWKAFWDVVFCVSGIAI 131 Query: 131 PVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQL-LTPFPLLCGLLSLGMVILQGGVWLQ 189 G GN++LG+P + T Q Y W L P+ LCG L + + G + Sbjct: 132 SFFLGAIVGNMILGLPMSPTTQ----YSSLSWLLFFRPYAFLCGALVVSAFSIHGATFTL 187 Query: 190 LKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAV 249 +KT G +H R KR + +L L Y L +G +++ G S P+ + V Sbjct: 188 MKTSGELHHR---IVKRFSY--VLSAFLVIYLLLIGTT--LVMIPQTKGYSFPIGSFIGV 240 Query: 250 LPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITL 309 PVL + + C L T I + R G FL +S +I ++ + Sbjct: 241 ---------PTYPVLILLLAMTLACSLATKTCISKQRYGCAFLYSSCNLLLLILSSVALV 291 Query: 310 FPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 FP ++ S+VS S T++++ +S TL +LVIVL+ LP ++ Y ++ Y G+ Sbjct: 292 FPNLLFSTVSSEYSYTIYNAAASMKTLQSLLVIVLVGLPFIIAYGVYIYRVFKGK 346 >UniRef50_D1R937 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R937_9CHLA Length = 342 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 105/369 (28%), Positives = 190/369 (51%), Gaps = 30/369 (8%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M + +L FIW+ ++ + I DGFD+G+G +L L ++ D+ERR+++NS+G W+GN Sbjct: 1 MINASSLEFIWFSAFVALVTGYAILDGFDLGVG-MLHLFSKKDEERRLMLNSIGPVWDGN 59 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 +VWL+ AGGALFA +P +YA S FYV ++++L L FR +A ++R K WR MWD Sbjct: 60 EVWLVTAGGALFAGFPDIYATLCSAFYVPLMILLGGLIFRAVAIEFRSKRPMPWWRWMWD 119 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 + SL+ + G+ GNL+ G+P + E+ G LL P+ LL G++++ + Sbjct: 120 VLFSLASLIIALALGVVLGNLIRGLPL----DAQKEFTGDLSSLLHPYALLIGIMAVALF 175 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 + GG+++ +KT G +H + + + ++ + L Sbjct: 176 CMHGGIFILMKTEGELHDKIRSWINPFIIFFIITYSLV---------------------- 213 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 M + +P + E P+ ++ + I +G+ F+ + Sbjct: 214 --TMATLIYMPHM-IKTIQERPIFFLLAVGNMLSIANIPREINQGKDWLAFVSSCFNIVF 270 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 ++ + +P V+ + P SLT+++S SS+ TL I+++I LI +P+VL YT Y+ Sbjct: 271 LMLLYAVGTYPEVVRAINDPSLSLTIYNSASSEKTLEILIIIALIGIPLVLAYTTAIYWI 330 Query: 361 MWGRMTTET 369 G++ ++ Sbjct: 331 FHGKVKLDS 339 >UniRef50_C7N0L6 Cytochrome d oxidase cyd, subunit II n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N0L6_SLAHD Length = 346 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 124/368 (33%), Positives = 187/368 (50%), Gaps = 40/368 (10%) Query: 10 IWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGG 69 IW++L+ V++ + I DGFD+G G L P +A+ND+E+ ++ ++G W+GN+VWL+ GG Sbjct: 7 IWYVLVFVLIAGYFILDGFDLGAGVLSPFIAKNDEEKLTLMKAIGPVWDGNEVWLLTGGG 66 Query: 70 ALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLV 129 ALFAA+ YA FSGFY+A+ILVL L R ++ ++ D WRK+W IGSL+ Sbjct: 67 ALFAAFAPAYATTFSGFYLAIILVLMGLIIRAVSVEFAAH--DPAWRKLWFVLFFIGSLL 124 Query: 130 PPVVFGIAFGNLLLGVPFAFTPQLRVEYLG-SFWQLLTPFPLLCGLLSLGMVILQGGVWL 188 P +++G+A GN+ G+P Y+G L+TPF LLCGLL L M ILQG WL Sbjct: 125 PALLYGVAVGNIYAGIPM----DAAGNYIGVPLIGLVTPFTLLCGLLGLTMCILQGACWL 180 Query: 189 QLKT--VGVIHLRSQLATKRAALLVMLCFLLAGYW--------LWVGIDGFVLLAQDANG 238 +K G + R++ + A++ ++ F L + L G+ +L Sbjct: 181 SVKAPLEGELLARARGLRRPVAIVAIVLFALVTLYALFIIKPELAAGLGVLRILFALVVV 240 Query: 239 PSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQ 298 + + L AV P E+ L IF + C L G L +S+ Sbjct: 241 AALVFVLLKAVQP--------EASDLTIFLVASVACFALV-----------GLLASSMFP 281 Query: 299 FGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSY 358 V+ +G L PF+ + + I++ S LTL M I + LP+VLLY Y Sbjct: 282 TFVVSGSGDPLTPFMTATEGAAITA----ADASGDLTLKWMFGITCVALPLVLLYHFLVY 337 Query: 359 YKMWGRMT 366 GR+ Sbjct: 338 RTFAGRLA 345 >UniRef50_C7RCZ4 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RCZ4_KANKD Length = 338 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 110/364 (30%), Positives = 180/364 (49%), Gaps = 44/364 (12%) Query: 10 IWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGG 69 IW LI ++ ++I DGFD+GIG L P + +N ++ +NSV W+GN+ WL+L GG Sbjct: 12 IWAGLIAFAVLAYIILDGFDLGIGILFPFI-KNKTDQETAMNSVAPIWDGNETWLVLGGG 70 Query: 70 ALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLV 129 LFA +P Y+ Y+ +IL+L L FR +AF++ + ++ + WD G +GSLV Sbjct: 71 GLFAVFPLAYSVIMPALYMPIILMLLGLIFRGVAFEFHWRTKNS--QDWWDRGFFLGSLV 128 Query: 130 PPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGL-LSLGMVILQGGVWL 188 + GIA G L+ G+ A Y G +W LTPF + G+ L++G V+L G WL Sbjct: 129 ATLCQGIALGALVQGITVA-----DRAYAGGWWDWLTPFSITTGIALAMGYVLL-GATWL 182 Query: 189 QLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVA 248 +KT G + +S K AA L +L + W+ V + Q Sbjct: 183 NMKTTGELQKQSVQFAKIAAWLTLLFIGIISLWM-------VFIEQQ------------- 222 Query: 249 VLPGAWMNNFVESPVLW---IFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 +++ + ++P L+ I PL FC + + +GR F+ A G+ + Sbjct: 223 -----YLHRWFDAPNLYYLIIVPLAVLFCGFQLLNGLRKGRETSPFMYA----IGLFVLS 273 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 I + P+ V P S+T+W + + +L +LV LPI++ YT ++Y+ G++ Sbjct: 274 YIGILISFYPNLVPP--SITIWQAAAPDDSLKFLLVGAAALLPIIIGYTAYAYWVFRGKV 331 Query: 366 TTET 369 Sbjct: 332 KANE 335 >UniRef50_A0PP39 Integral membrane cytochrome D ubiquinol oxidase (Subunit II) CydB n=53 Tax=Bacteria RepID=A0PP39_MYCUA Length = 538 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 108/372 (29%), Positives = 189/372 (50%), Gaps = 47/372 (12%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVAR---NDDE--RRIVINSVGAHWEGNQ 61 L+ +W+ +I V+ + F I +GFD G+G L+ A D E RR +N++G W+GN+ Sbjct: 3 LQELWFAVIAVLFLGFFILEGFDFGVGMLMAPFAHFGTGDPEIHRRTALNTIGPVWDGNE 62 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWLI +G A+FAA+P YA FS Y+ ++ +L + R +A ++RGK+ D++WR + D Sbjct: 63 VWLITSGAAMFAAFPGWYATVFSTLYLPLLAILFGMIVRSVAIEWRGKVDDSKWRALADF 122 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 G+ GS +P +++G+AF L+ G+P +L + S +L + LL GL + G+ + Sbjct: 123 GIAAGSWLPAILWGVAFAILVRGLPVDANGRLAL----SIGDVLNAYTLLGGLATAGLFL 178 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 G V++ LKT G I R L + + L+AG+ +W Q A G Sbjct: 179 FYGAVFVALKTAGPI--RDDAYRFAVVLSLPVTVLVAGFGVWT---------QLAYGKQ- 226 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAI---YRGRPGWGFLMASLMQ 298 W + LLG + R GW FL +++ Sbjct: 227 -----------------------WTWALLGVAVVAQMAAVLLVWRRVSDGWAFLCIAVVV 263 Query: 299 FGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSY 358 V+ L+P ++PS+++ ++T+++++S+ TL IM + +F P+ ++Y W+Y Sbjct: 264 AAVVLLLFGALYPNLVPSTLNERWNVTVYNASSTPYTLKIMTWVTALFAPLTVVYQAWTY 323 Query: 359 YKMWGRMTTETL 370 + R++ E + Sbjct: 324 WVFRQRISAERI 335 >UniRef50_Q0BVW7 Cyanide-insensitive cytochrome bd-type quinol oxidase subunit II n=47 Tax=Proteobacteria RepID=Q0BVW7_GRABC Length = 342 Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 110/362 (30%), Positives = 178/362 (49%), Gaps = 31/362 (8%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 E L +IW ++I V ++ +++ DGFD+G G L L R +++R +++NS+ W+GN+ WL Sbjct: 4 ENLPYIWGMIIAVAVLAYVLLDGFDLGCGILF-LAEREEEDRDVMVNSIAPVWDGNETWL 62 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 ++ GG L A +P YA FS FY +I +L +L FR +AF++R K R R+ WD Sbjct: 63 VMGGGGLLAVFPVAYAILFSAFYPTIIAMLLALVFRGVAFEFRFKAHTLRGRRWWDRAFC 122 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQG 184 +GSLV + G+ G +L GV Y G ++ LTPF +LCG+ + L G Sbjct: 123 LGSLVAALCQGMTLGGILQGV-----HHNGFAYTGGWFDWLTPFTVLCGVAVVVGYTLLG 177 Query: 185 GVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLM 244 WL LKT +H+R++ K +L++L W PL+ Sbjct: 178 ACWLILKTENGLHVRARHYAKPLFILLLLLIAAVSLW-------------------TPLL 218 Query: 245 KLVAVLP-GAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIF 303 L +W + +PV PLL L ++ R L A M Sbjct: 219 NETYRLRWFSWPGIVLTAPV----PLLVAAMALGFWRSLQHKRHAAPLLYAMGMFLLCYV 274 Query: 304 TAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 GI+LFP ++P + + L+L D+ + + +LV ++ +P+VL Y +SY+ G Sbjct: 275 GLGISLFPNIVPPA-HGTTPLSLVDAAAPAASQMFLLVGAVVLIPMVLGYNAYSYWIFRG 333 Query: 364 RM 365 ++ Sbjct: 334 KV 335 >UniRef50_Q1J2Z7 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Bacteria RepID=Q1J2Z7_DEIGD Length = 365 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 107/371 (28%), Positives = 179/371 (48%), Gaps = 44/371 (11%) Query: 10 IWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGG 69 +W+ L G+I V+ DGFD G+G L P +ARN+ +RR +I +VG W N+VW+ILA G Sbjct: 6 LWFALTGLIFTVYFFLDGFDFGVGVLQPFLARNEAQRRALIGTVGPFWAANEVWVILAAG 65 Query: 70 ALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLV 129 +FAA+P Y A +G Y L+L +L R +AF+YR ++ RWR WD I +L+ Sbjct: 66 VIFAAFPVWYGALMTGLYPLFALILLALIGRGVAFEYRAEVDHVRWRVFWDVTSFITNLL 125 Query: 130 PPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVW-- 187 P ++G+ N++ G+P + + L +F F +L GL +L + +L G + Sbjct: 126 PAFLWGVIMANMVRGLPIGEGARFQGSPLDAF----DLFSVLGGLSTLSLFVLHGATYLL 181 Query: 188 LQLKTVGVIHLRSQLAT---KRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLM 244 L+L+T +H R++ A A ++L F+ G+ + G+ + L++ Sbjct: 182 LRLQTGSTLHARARRAALTWGAVATALVLAFVYVGF-IHTGLFATLGLSE---------- 230 Query: 245 KLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFT 304 W+FP L +A+ R F L T Sbjct: 231 --------------------WLFPAGAAVNLALIWLALTLRRDRLAFAATGLTIVFSTAT 270 Query: 305 AGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 ++L+P +PS++ +LT+ + S TL ++ + L FLP+++ Y W+YY R Sbjct: 271 IFLSLYPAALPSTLGEGYTLTVQAAASEPYTLRLLSWVSLAFLPLIIGYQAWNYYVFRQR 330 Query: 365 MTTETLRRNEN 375 + R+E Sbjct: 331 VQ----ERDEQ 337 >UniRef50_B1VE35 Cytochrome d ubiquinol oxidase subunit 2 n=4 Tax=Corynebacterium RepID=B1VE35_CORU7 Length = 321 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 110/362 (30%), Positives = 173/362 (47%), Gaps = 49/362 (13%) Query: 10 IWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGG 69 +W+ LI + + + +GF G+G LLP + R++ R +I ++G W+GN+VWLI AGG Sbjct: 8 LWFGLIVFLFAGYFMLEGFGFGVGLLLPFLGRDEARRSAMIRTIGPVWDGNEVWLITAGG 67 Query: 70 ALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLV 129 ALFAA+P YA FSGFY+ + L+L L R + ++R K+ A+WR DAG++ GS + Sbjct: 68 ALFAAFPAWYADMFSGFYLPLFLILLGLIVRIVGLEWRTKVNSAKWRAWCDAGIITGSWI 127 Query: 130 PPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQ 189 P+V+G+A NL+ G+P E + L P+ L+ + + L G +++ Sbjct: 128 SPIVWGVAVANLVSGIP---------ENAAHVYPLFHPYALVGAAALVCVFALHGLTFIR 178 Query: 190 LKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAV 249 LKT GV+ +Q + L + + G F L Q G + + LV Sbjct: 179 LKTAGVLRKEAQ---RFITPLAIGSIVFGGV--------FALWTQLGYGKAWTWVPLVLA 227 Query: 250 LPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITL 309 + G LLG +V A R GW F +L V+ A + Sbjct: 228 VVG----------------LLG------SVAATVAQRDGWAFTATALAIVSVVVLAFGAM 265 Query: 310 FPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTET 369 FP + + L +W + S+ TL IM +I P VLLY ++Y+ R+ E Sbjct: 266 FPMLW-------TDLDIWQAASNPYTLKIMTWAGVIVTPFVLLYQGYTYWIFRRRIVAEP 318 Query: 370 LR 371 + Sbjct: 319 VH 320 >UniRef50_C7MDJ2 Cytochrome d oxidase cyd, subunit II n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MDJ2_BRAFD Length = 357 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 118/369 (31%), Positives = 185/369 (50%), Gaps = 37/369 (10%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLV-ARNDDERRIVINSVGAHWEG 59 M D L +W+ LI + + + +GFD G+ + R R V+ ++G W+G Sbjct: 1 MLDPTVLETLWFFLIAFFFLGYFVLEGFDFGVQMNVATFWRRGTGTRGTVLRTIGPVWDG 60 Query: 60 NQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMW 119 N+VW+I G LFAA+P YA FSGFY+A++L+L L R AF +R K+ RWR W Sbjct: 61 NEVWVITGGALLFAAFPEWYATLFSGFYLALLLLLVVLIVRVCAFKWREKVDSERWRNGW 120 Query: 120 DAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGM 179 D VIG P +++G+AF N++ GV + L +LL PF LL GL+ + + Sbjct: 121 DVVHVIGGFAPALLWGVAFSNIVAGVSIDENRWVTTTLL----ELLNPFALLGGLVFVLL 176 Query: 180 VILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGP 239 L G ++L LK G R + R A ++ L+AG F+L Q A+ Sbjct: 177 FWLHGTLYLALKVEG----RLREDANRLAGILAWPALVAG-------AAFLLWYQLAH-- 223 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299 S+ + L+ P+ L PL +GR G F + Sbjct: 224 SHSALTLI--------------PLAVAALGLLAVVPL-----NRQGREGLAFGATTAAIT 264 Query: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359 G + T LFP+V+P++ +SLT+ +++S+ TL++MLV + +F+P+VL YT+W+Y Sbjct: 265 GAVITLFGGLFPYVLPATNDAANSLTVANASSTGHTLTVMLVALCVFMPVVLAYTVWTYR 324 Query: 360 KMWGRMTTE 368 R++ E Sbjct: 325 VFRHRVSDE 333 >UniRef50_B1MXQ3 Cytochrome d ubiquinol oxidase, subunit II n=30 Tax=Lactobacillales RepID=B1MXQ3_LEUCK Length = 337 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 107/368 (29%), Positives = 189/368 (51%), Gaps = 40/368 (10%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW++LIGV+ F +GFD GIG L AR+ +R + ++G +W+ N+VWL+ Sbjct: 4 LEIIWFVLIGVLWAGFFFLEGFDFGIGMQFALNARDQKDREALYQAIGPNWDANEVWLVT 63 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGGA FAA+P YA+ FSGFY+ + +VL SL +R ++F++R + + ++W+ + + Sbjct: 64 AGGATFAAFPAWYASLFSGFYLMLFIVLLSLIYRGVSFEFREHMPTVQGTQLWERLIALT 123 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S + P G+ F ++ G+P R F+ +TPF L+ G+ M + G Sbjct: 124 SFLVPFFLGMIFTAMVSGMPI----DARGNLSAGFFDYVTPFSLVGGVAVSLMSYVHGLN 179 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 + +L+ G + R+ L L +L +LLA +A L Sbjct: 180 YTRLRIDGKLRTRA---------LKQLEYLYP-----------ILLAGEA---------L 210 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTV----MAIYRGRPGWGFLMASLMQFGVI 302 AVL + +F+++ +W +L L TV +AI + F+++ L V+ Sbjct: 211 FAVLL-FFYTDFIQTQTVWTLSILVVIV-LTTVIGWLLAIKQKMEKLPFVLSGLTLVEVV 268 Query: 303 FTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMW 362 + LFP VM ++ +P+ +L + +++SS TL +M ++V+ LP+ L Y +WS++ Sbjct: 269 VLLFVGLFPRVMVAN-NPLHTLNIMNTSSSTYTLKVMTIVVVTALPVTLGYQIWSFWVFR 327 Query: 363 GRMTTETL 370 R+ + + Sbjct: 328 KRIVSHKV 335 >UniRef50_Q1ILJ8 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Acidobacteria RepID=Q1ILJ8_ACIBL Length = 349 Score = 137 bits (344), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 100/323 (30%), Positives = 167/323 (51%), Gaps = 34/323 (10%) Query: 26 DGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSG 85 DGFD+G G L VAR D+ERR++I S+G W+GN+VWL+ AGG L+ A+P++YA+ FSG Sbjct: 20 DGFDLGAGVLHLFVARTDEERRLIIRSIGPVWDGNEVWLLSAGGTLYFAFPQLYASGFSG 79 Query: 86 FYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGV 145 FY+ +++VL L R + ++R I W+ +D + SL+ + FG A GN++ GV Sbjct: 80 FYLPLMMVLWLLMGRAIGIEFRTHIQSDVWKGFFDVVFSLSSLLLTIFFGAALGNVIRGV 139 Query: 146 P-----FAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRS 200 P + F P +G +L + +LCG+++ + G ++ KT G ++ R Sbjct: 140 PLGEDRYFFEPLWTNWRVGPHPGILDWYTVLCGVIAAVTLTAHGAFYVASKTEGDLNQRC 199 Query: 201 QLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVE 260 + K AA+L + LL L+ ++ P + N+ Sbjct: 200 R---KTAAVLWPVQVLLT---------------------IVSLIATTSIRPEV-LANYKR 234 Query: 261 SPVLWIFPLLGFFCPLLTVMAIYR--GRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSV 318 PV W+ P+L L M ++R G F+ ++L ++ A L+P V+P+S Sbjct: 235 WPVGWLIPIL--VVATLGGMFVFRKKGNDKAAFVSSALYITVMLVGAVFALYPTVLPAST 292 Query: 319 SPISSLTLWDSTSSQLTLSIMLV 341 +P SLT+ ++++ L+I LV Sbjct: 293 NPDWSLTIQNASAPTYGLTIGLV 315 >UniRef50_Q040K6 Cytochrome bd-type quinol oxidase, subunit 2 n=53 Tax=Lactobacillales RepID=Q040K6_LACGA Length = 340 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 98/363 (26%), Positives = 180/363 (49%), Gaps = 51/363 (14%) Query: 20 VVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVY 79 ++F ++GFD G+G +ARND E+ +++ ++G HW+GN+VWLI AGGA+FA++ Y Sbjct: 21 MIFYFTEGFDYGVGMATKFLARNDQEKHLMMETIGPHWDGNEVWLITAGGAMFASFSDWY 80 Query: 80 AAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFG 139 A+ FSG+Y+ + L +L R ++F++ ++W + L GSL+ P + FG Sbjct: 81 ASLFSGYYILLFFTLFALIIRGVSFEFSAHAETEHGFRIWTSALFWGSLLAPFFLTMMFG 140 Query: 140 NLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLR 199 +L+ GVP + + S W ++ P ++ G+ + + ++ G +L+L+ + Sbjct: 141 SLIQGVPIDAQGNMSL----SVWNIVNPLSVVAGVAGVLLCLIHGINFLRLR------ID 190 Query: 200 SQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFV 259 ++RAA L +L+A ++G F LL F Sbjct: 191 DPELSERAASLNEKLYLVA----YLGEVVFALLV------------------------FF 222 Query: 260 ESPVLWIFPLLGFFCPLLTV-------MAIYRGRPGWGFLMASLMQFGVIFTAGITLFPF 312 ++ + P+ L+ V +++ + + F+ + L GV+ LFP Sbjct: 223 QTDFFKLRPISSTIITLIIVVLTAWSDISLIKNKQVAAFVTSGLTLVGVVGLLFNGLFPR 282 Query: 313 VMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLRR 372 V+ ++ S SL + + +S+LTL +M ++ LI LPI L+Y +WSY R ++ Sbjct: 283 VLIATDSA-HSLLIKTAANSKLTLEVMTIVALILLPIALVYIIWSYVVFRRR-----IKV 336 Query: 373 NEN 375 N+N Sbjct: 337 NQN 339 >UniRef50_D2B3T8 Cytochrome oxidase subunit II n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B3T8_STRRD Length = 313 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 108/363 (29%), Positives = 171/363 (47%), Gaps = 55/363 (15%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L W+ +I + + + +GFD G+G L P ++RN+ ER+ V+ ++G W+GN+VWLI Sbjct: 3 LTTFWFAVIAFLWTGYFVLEGFDFGVGLLAPALSRNEAERKQVLGTIGPVWDGNEVWLIT 62 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 A GA+FAA+P YA S FY+ + LVL L R + ++RGK+ + R D G+++G Sbjct: 63 AVGAMFAAFPAWYAGLLSEFYLPVTLVLVGLIVRGIGLEWRGKVHHSSDRAWCDLGILVG 122 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S +P ++G F +LL A L+ G+ SL + +L G V Sbjct: 123 SALPAFLWGAVFADLLHDSAIA--------------------ALVGGVFSLSLCVLHGAV 162 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 ++ LKT G + R+ +R A++ L + +N P+ Sbjct: 163 FVTLKTSGPVRARA----RRTAMVTSAVALP------------AAVVALSNIPAA----- 201 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGF-LMASLMQFGVIFTA 305 G + ++ +P LW L + +RGR GW F AS + G Sbjct: 202 -----GTAVADWTAAPWLWACALTAMAALAAGIALTWRGRDGWAFAATASSIALG----- 251 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 I LF + P +P+ LT+ ++ S TL ++ I LI LP VL Y WSY+ R+ Sbjct: 252 SIALFGALWP---APLPGLTVAEAASGPYTLGMLTWIGLIALPFVLGYQAWSYWVFRKRL 308 Query: 366 TTE 368 E Sbjct: 309 VAE 311 >UniRef50_Q4KA99 Cytochrome d ubiquinol oxidase, subunit II n=66 Tax=Proteobacteria RepID=Q4KA99_PSEF5 Length = 338 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 102/359 (28%), Positives = 176/359 (49%), Gaps = 35/359 (9%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW ++I +++++I DGFD+G+G L PL+ + ER +++N+V W+GN+ WLIL Sbjct: 8 LSLIWGVIIAFGVMMYVIMDGFDLGLGILFPLIP-DARERDVMMNTVAPVWDGNETWLIL 66 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 G AL+ A+P Y+ Y+ +I +L L FR +AF++R K + + R +WD + G Sbjct: 67 GGAALYGAFPLAYSVILEALYLPLIFMLAGLIFRGVAFEFRFKASPEK-RHIWDWAFIGG 125 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 SL+ + GI G + G+P + ++ G L PFPL CGL + L G Sbjct: 126 SLLATLCQGIVIGTYISGIPV-----VDRQFAGGTLDWLAPFPLFCGLGLIVAYALLGST 180 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 WL +KT G++ R + T+ A L ++A +W + L + AN Sbjct: 181 WLLVKTEGMLEARMRHYTRPLAF--ALTAVVAVLCVWTAL----LHPEIAN--------- 225 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 W ++ + +LG + + + W F+ ++ F Sbjct: 226 ------RWFSH-AHIVIFGALLVLGLAALFGLLGTLRQHHSHWPFVFTLVLVFLGYIGLA 278 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 +++P ++P S+S LW++ S + +L+ L LP++L+YT WSYY G++ Sbjct: 279 FSIWPNIVPPSIS------LWEAASPLSSQLFILIGTLFILPVILMYTCWSYYVFRGKV 331 >UniRef50_C2KAY6 Cytochrome d ubiquinol oxidase, subunit II n=5 Tax=Lactobacillales RepID=C2KAY6_9LACO Length = 338 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 109/368 (29%), Positives = 183/368 (49%), Gaps = 49/368 (13%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L+ +W++LIGV+ F DGFD G+G + +A N+ ER V+ ++G W+GN+VWLI Sbjct: 4 LQILWFILIGVLFSGFFFLDGFDFGVGMAVKTLAHNEPERDQVVRTIGPVWDGNEVWLIT 63 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGGA+FA++P YA FSG+Y+ ++L+L L R ++F++R K A + + +WD + IG Sbjct: 64 AGGAMFASFPYWYATLFSGYYLILLLILVGLIIRGVSFEFRAKCAPYQ-KHIWDNAMAIG 122 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S++ +FG+ F +++ G+P + SF+ F ++ G+ + L G Sbjct: 123 SVIATFLFGVMFISMIKGMPIDAKGNIS----ASFFDYFNWFSIVGGIALTLLCYLHGLN 178 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYW-LWVGIDGFVLLAQDANGPSNPLMK 245 ++ +KT GVI R+Q + A YW L+VG F LL Sbjct: 179 YITIKTKGVISDRAQNYAQ------------ALYWVLYVGEVVFALLL------------ 214 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTV-------MAIYRGRPGWGFLMASLMQ 298 ++ + + P+ C +L V +A + + G + L Sbjct: 215 ------------IFQTDFMRVHPIATLICLVLIVGFSVAAHVATFINKQGMALACSGLTL 262 Query: 299 FGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSY 358 ++ LFP VM SS+S L + ++SS TL +M V I +P +L YT+W+Y Sbjct: 263 ISLVALIFCGLFPRVMISSISSKYDLLIHSASSSNYTLIVMTVATCILVPCILAYTIWAY 322 Query: 359 YKMWGRMT 366 + R++ Sbjct: 323 WIFRKRIS 330 >UniRef50_A6C9B8 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C9B8_9PLAN Length = 346 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 93/339 (27%), Positives = 168/339 (49%), Gaps = 31/339 (9%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 + +W +L+ +++ +++ DGFD+G+G L L+AR+ E++ +I S+ W+GN+VWLI Sbjct: 1 METVWLILLVLMIATYIVLDGFDLGVGVLHLLIARDRSEQKQIIQSIAPVWDGNEVWLIA 60 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGG + A+P ++ FSGFY+ + +V+ L FR ++ + ++D+ W W+ L + Sbjct: 61 AGGTMMMAFPGFLSSMFSGFYLPLTMVVWLLIFRAISIELPHYLSDSLWIHFWNLMLFVA 120 Query: 127 SLVPPVVFGIAFGNLLLGVPFA-----FTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 S + ++ G A N+ GVP F P +G +L + +L G+ S ++ Sbjct: 121 SGLLIIILGAAMANIYRGVPLDATGSFFEPLWTNFRIGPPTGILDWYTILSGVTSATFLL 180 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 G +WL KT G R Q ++AA WLW G G L+ A+ Sbjct: 181 HHGALWLVAKTDG----RVQQHARQAAT-----------WLWTGSIGLTLVIFIASWYVQ 225 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 PL + +F E+P I PL L + ++ + FL + L + V Sbjct: 226 PLAR----------TSFSETPWKIILPLAAVLSLLASGYLRWKNKNMPAFLSSGLFIYLV 275 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIML 340 IF+ + ++P ++P ++P LT+++++ L+ L Sbjct: 276 IFSGAMAIYPNILP-GLNPEHHLTIYNTSPGPEKLTTTL 313 >UniRef50_C2CTD2 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Corynebacterium striatum ATCC 6940 RepID=C2CTD2_CORST Length = 336 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 106/369 (28%), Positives = 180/369 (48%), Gaps = 41/369 (11%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLV-----ARNDDERRIVINSVGAHWEGNQ 61 L +W+++I + + +GFD G+G LLP + A +D R + ++G W+GN+ Sbjct: 3 LNTVWFIIIAFFFTGYFVLEGFDFGVGMLLPFLRGESAADSDARRTAAVRAIGPVWDGNE 62 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWLI+AG ++FAA+P YA FSGFY+ ++L++ +L R ++ ++R K+ WRK D Sbjct: 63 VWLIVAGASIFAAFPEWYATLFSGFYLPLLLIVTALIIRGVSLEWRVKVDTLAWRKRCDI 122 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 G+ +GS +P +++G+A N++ GV F+ +P + F LL P LL G L + Sbjct: 123 GIALGSYLPALLWGVAMTNIVAGVAFS-SPGHVDSVIDGFLGLLNPRGLLGGAAFLLLFA 181 Query: 182 LQGGVWLQLKTVGVIHLRSQL-ATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 G ++L LKT + R+Q+ A R L + + A Y +W Sbjct: 182 FHGALFLGLKTHAPV--RTQVHAIARGWLAIATLAVGAIYLVW----------------- 222 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 M+L NF +S WI + ++ GR F + Sbjct: 223 ---MQL----------NFGKSWT-WIALAAVALALVAAFAGLWSGRDRTAFFGTAAAIIA 268 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 V LFP V+P SV+ ++ L ++ +++S TL IM ++ P VL+ W+Y++ Sbjct: 269 VGLALFGALFPNVLP-SVTDVAGLDIYTASASPYTLKIMTWAAVVLAPAVLIGQGWTYWQ 327 Query: 361 MWGRMTTET 369 R+ + Sbjct: 328 FRARIGVDA 336 >UniRef50_A0LMS2 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LMS2_SYNFM Length = 343 Score = 130 bits (327), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 110/370 (29%), Positives = 183/370 (49%), Gaps = 41/370 (11%) Query: 10 IWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGG 69 IW +IG L+ + ISDG D+G+G +L L A ++ ER +++ S+G+ W NQ WL+L GG Sbjct: 11 IWLAIIGFFLLYYAISDGADLGVG-ILSLAATDERERGLIMGSIGSIWHDNQTWLVLLGG 69 Query: 70 ALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLV 129 LF A+P Y S YV ++ ++ L FR ++F++R ++R +W +GSL+ Sbjct: 70 MLFGAFPLFYGVLLSALYVPILCMIFGLVFRGVSFEFR---ENSRHPAVWSRCFGVGSLI 126 Query: 130 PPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQ 189 + G A G LL G+ + GS PF L L L ++ G +L Sbjct: 127 VTLSQGFALGGLLGGLDVR-----EGVFKGSVLGWANPFSCLVALGVLCGYVMLGSNFLV 181 Query: 190 LKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAV 249 KT G I RS + A+L+ + GI V L A P +++ + Sbjct: 182 FKTAGPIQARSYRTSFAASLMTL------------GISILVHLFTAAKYPQ--MVRKLTT 227 Query: 250 LPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITL 309 LP A+ + +FP+L FC ++ +++ R R L L G+I + I L Sbjct: 228 LPEAYY--------IAVFPVLAAFCFVMLFVSLRRKRE----LAPLLCNAGIILFSFIGL 275 Query: 310 ----FPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 +P ++P+ VS S++T+ + +S+ TL ML + + LP++L+YT + + G++ Sbjct: 276 SLGMYPDMIPNVVS--SAVTVHAAAASKDTLEFMLQVTSVLLPVILVYTGYKHRIFQGKV 333 Query: 366 TTETLRRNEN 375 TTE + Sbjct: 334 TTEAYSGKDE 343 >UniRef50_A2RMA6 Cytochrome d ubiquinol oxidase, subunit II n=5 Tax=Lactobacillales RepID=A2RMA6_LACLM Length = 331 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 105/364 (28%), Positives = 177/364 (48%), Gaps = 43/364 (11%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L+ W++++GV+ F +GFD G+G VA++ E I S+G W+ N+VWL+ Sbjct: 4 LQLFWFIIVGVLFSGFFFLEGFDYGVGMSAITVAKDKREVEQAIGSIGPVWDLNEVWLLT 63 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGGA+FA++P YA+ FSGFY+ + L+L L FR + F++R + + +W L + Sbjct: 64 AGGAMFASFPYWYASLFSGFYLILFLILVGLIFRGVTFEFRHHSHTEKGKMIWTKVLGVA 123 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S P +FG+ F ++ GVP + +F + ++ G+ + + L G Sbjct: 124 SFAIPFLFGLMFTGMIQGVPM----DAKGNVTATFTTYVNFLSVVGGVAVMLLAWLHGLN 179 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 +L LKT G LR KRAA + + FVL A + L Sbjct: 180 YLALKTEG--DLR-----KRAAKIANFLY-------------FVLYAGEV-----VFAIL 214 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 +AV + +F+ + +L ++ L+V + G M++ + G+ F A Sbjct: 215 LAVFTDFFEKHFIGTLLLLALIVILTLVAHLSVRS--------GKEMSAFLASGLTFIAL 266 Query: 307 ITL-----FPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 + L FP VM ++ +P S+ + +++S+ TL M +I L LP VL+Y W+YY Sbjct: 267 VALIFQGIFPRVMIAT-NPAHSILIKNASSTGYTLKTMTIITLAILPFVLIYMGWTYYIF 325 Query: 362 WGRM 365 R+ Sbjct: 326 RKRI 329 >UniRef50_A1R5L7 Cytochrome d ubiquinol oxidase, subunit II n=18 Tax=Actinobacteria (class) RepID=A1R5L7_ARTAT Length = 360 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 113/368 (30%), Positives = 176/368 (47%), Gaps = 41/368 (11%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 E L IW++ I V+ ++ +GFD+G+G L+ L ARN+ +RR+++N++G W+GN+VWL Sbjct: 2 ELLPTIWFVAIAVLWTGYLFLEGFDLGVGMLMKLFARNNTDRRVLLNTIGPVWDGNEVWL 61 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 + A GA FAA+P YA+ FS Y+ ++ VL +L FR +AF+YRGK+ WR WD + Sbjct: 62 LTAAGATFAAFPLWYASLFSTLYLPLLAVLAALIFRAVAFEYRGKVDSESWRNRWDWAIA 121 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQG 184 IGS V G A G+P + G + + LL G + ++ Sbjct: 122 IGSFVAAFGIGAALALTTTGLPL----DANGDRSGGPMSWFSGYALLGGFGVVAFALVHA 177 Query: 185 GVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLM 244 +L LKT G + R++ W FV L A P M Sbjct: 178 LAFLALKTDGEVRYRAR------------------RW-------FVRLVPVAVLPMFGWM 212 Query: 245 KLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFT 304 V L G P W + +L G G F ++L F V T Sbjct: 213 VAVQFLSG--------KPWTWALVVAAVVAVVLAWRLARTGSEGRAF--SALGAFIVCAT 262 Query: 305 AGI--TLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMW 362 A I FP V+PS++ P +LT+ +++SS TL +M ++ + LP+V+ Y W+Y+ Sbjct: 263 ASIFGAAFPVVIPSTIDPAFNLTISNASSSDYTLGLMSIVAAVGLPLVIAYQSWTYWVFR 322 Query: 363 GRMTTETL 370 R++ + Sbjct: 323 RRVSAAHI 330 >UniRef50_D1RLM4 Cytochrome D ubiquinol oxidase subunit II n=1 Tax=Legionella longbeachae D-4968 RepID=D1RLM4_LEGLO Length = 331 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 101/371 (27%), Positives = 180/371 (48%), Gaps = 52/371 (14%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L I+ +L+ I+++++I DGFD+GIG L P + ++ ER ++NS+ W+GN+ WL+ Sbjct: 2 LPLIFAVLLAFIVMMYVILDGFDLGIGILFPFTS-SEKERDKMMNSIAPVWDGNETWLVF 60 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 G L+ +P+VY A Y+ ++ +L +L FR ++F++R K AD + + +W+ IG Sbjct: 61 GGAILYGGFPQVYGALLPVLYIPIMFMLIALIFRGVSFEFRFK-AD-KSKPVWNWLFAIG 118 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S+ G+ G + G F+ PQ + S W LTPF L G+ + L G Sbjct: 119 SIAAAFFQGVILGCFVQG--FSMNPQ-TMAITQSSW--LTPFSLFTGVALVSGYGLLGAT 173 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 W+ +K+ G L++++ LL+ + F L +W + + + P Sbjct: 174 WMIIKSSG--KLQAKMVHYARGLLISVSFFLVFVSIWTPLHSEEVFNRWYQFP------- 224 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIY---------RGRPGWGFLMASLM 297 NF LW+ PL PL+T AIY F+ + ++ Sbjct: 225 ----------NF-----LWLSPL-----PLITAFAIYLTWRNLSLNSNNERKPFIYSIII 264 Query: 298 QFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWS 357 ++++P+++P + T+W++ + TL+ +LV V I LPI+L YTL++ Sbjct: 265 FLCSYIGIAVSVYPYLIPHQI------TIWEAAAPSSTLTFILVGVAIMLPILLAYTLYA 318 Query: 358 YYKMWGRMTTE 368 Y+ G+ Sbjct: 319 YFLFRGKTEEH 329 >UniRef50_B0UGT2 Cytochrome d ubiquinol oxidase, subunit II n=17 Tax=Proteobacteria RepID=B0UGT2_METS4 Length = 347 Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 104/364 (28%), Positives = 177/364 (48%), Gaps = 40/364 (10%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L +W +++GV + ++++ DGFD+GIG + A ND+ R ++ SV W+GN+ WLIL Sbjct: 15 LPLLWAVILGVAITMYVVVDGFDLGIGIMFTR-AENDNWRDRMMFSVAPIWDGNETWLIL 73 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 G LF + YA Y+ M+++L +L FR +AF++R K AD +++WD G Sbjct: 74 GGAGLFCVFSVAYAILMPALYIPMLIMLIALVFRGIAFEFRFK-ADTS-KRIWDYAFHYG 131 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 SL+ GI G + G F R ++ G W LTPF L G+ + L G Sbjct: 132 SLLATFAQGIVLGAFVQG----FEVGGR-QFAGGTWDWLTPFSLATGVGLVCGYGLLGAT 186 Query: 187 WLQLKTVGVIHLRSQLATKR--AALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLM 244 W +KT G + + ++ +++ A +VM+ + A WV G + A+ + PS Sbjct: 187 WCVMKTTGALEIWARRKSEQFLVATIVMMAIVSA----WVPFLGRQIEARWFSWPS---- 238 Query: 245 KLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFT 304 ++A++P PLL F + ++ G FL++ +M Sbjct: 239 -ILALVP---------------VPLLTAFVAYMIYRSVNDGHHTAPFLLSIVMFLLGFLG 282 Query: 305 AGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 I+LFP+++P S+ T+W + ++ + L+ LPI YT ++YY G+ Sbjct: 283 LVISLFPYIVPPSI------TIWQAANTVDSQMFALIGYAFALPITFAYTAYAYYVFRGK 336 Query: 365 MTTE 368 + E Sbjct: 337 VAKE 340 >UniRef50_Q937L0 Cytochrome d terminal oxidase (Fragment) n=1 Tax=Erwinia chrysanthemi RepID=Q937L0_ERWCH Length = 121 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 62/121 (51%), Positives = 80/121 (66%) Query: 258 FVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSS 317 F PVLW PLLG PL+T + + FL +SL VI TAGI +FPF+MPS Sbjct: 1 FNNHPVLWAVPLLGVVLPLMTAVMARAEKGAMAFLFSSLSIACVILTAGIAMFPFIMPSV 60 Query: 318 VSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLRRNENEL 377 P SLT+WD+TSS LTL +M V+ +IF+PIVL YT+W YYKM+GR+T E + +N + L Sbjct: 61 TVPNVSLTVWDATSSLLTLRVMTVVAIIFVPIVLSYTIWCYYKMFGRITKEHVEQNSHSL 120 Query: 378 Y 378 Y Sbjct: 121 Y 121 >UniRef50_B8ESY7 Cytochrome d ubiquinol oxidase, subunit II n=4 Tax=Rhizobiales RepID=B8ESY7_METSB Length = 335 Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 102/357 (28%), Positives = 176/357 (49%), Gaps = 42/357 (11%) Query: 11 WWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGA 70 W ++ ++++++ DGFD+G+G LL L+ ND RR ++ ++ W+GN+ WL++ Sbjct: 5 WTAVLAFTILLYVLLDGFDLGVGMLLALMP-NDRGRRHMLAAIAPVWDGNETWLVVTATI 63 Query: 71 LFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVP 130 LF +P VY+ S FY+ + ++L L R ++F++R K R WD+ ++GSLV Sbjct: 64 LFGVFPLVYSILLSAFYLPVFVMLAGLILRGVSFEFREK--SPHHRAFWDSCFILGSLVA 121 Query: 131 PVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGL-LSLGMVILQGGVWLQ 189 + G+ G L+ G+P Y G + L+ F LLCG L +G +L G WL Sbjct: 122 SFIQGMMIGALVEGLPVE-----NGRYAGGPFGWLSSFALLCGAGLCVGYALLGAG-WLT 175 Query: 190 LKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAV 249 KT + +A +L LLAG ++ I L D Sbjct: 176 RKTTQDV---------QALAFGILPSLLAGVLAFLAIIFVYSLLLDL------------- 213 Query: 250 LPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITL 309 A M+ + E PVL++FPL+G ++ ++I R R FL + + T ++ Sbjct: 214 ---AVMHRWRERPVLFVFPLMGIAACVIMAVSIRRRRELLPFLSGASIFAAAFLTLAVSF 270 Query: 310 FPFVMPSSVSPISSLTLWDSTSSQLTLSIML-VIVLIFLPIVLLYTLWSYYKMWGRM 365 +P+++P SV T+ ++ + + + + M LI LPI ++YTL Y+ G++ Sbjct: 271 YPYMIPFSV------TIAEAAAPRSSQAFMFWGAGLIVLPITIIYTLVVYFVFKGKV 321 >UniRef50_A6W2X5 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Marinomonas RepID=A6W2X5_MARMS Length = 337 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 106/368 (28%), Positives = 171/368 (46%), Gaps = 48/368 (13%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L ++L++G + ++++ DGFD+GIG L P D ER ++ S+ W+GN+ WL+ Sbjct: 4 LALFYFLVLGFAIFMYVLLDGFDLGIGILYPWF-NQDGERDHLMRSISHVWDGNETWLVF 62 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 G LFAA+P YA S FY+ ++L+L +L FR +AF+YR K + R WD G Sbjct: 63 GGVVLFAAFPAAYAGITSTFYLPIMLMLFALIFRGVAFEYRFKSDTS--RPYWDFAFSAG 120 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S + G+ G+++ GVP + V+ L S LTPF +L G + L Sbjct: 121 SAIAAFCQGMLLGSIVQGVP------VGVDSLSSL-HWLTPFSILTGFAVMAGYALLAAC 173 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN----- 241 +L +K+ G I + K+ L+ +L ++ W I V + Q N Sbjct: 174 YLFMKSRGRIQKHAAKLGKQLLLITILAMVIVSVWT---IASQVEIRQRWFSGVNFLWLS 230 Query: 242 --PLMKL-VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQ 298 P++ L VAVL +N+ V + GRP W L+ Sbjct: 231 PLPIITLVVAVLAWRDLNSHATGTVH------------------HEGRPFWYAATLFLLG 272 Query: 299 FGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSY 358 F + + LFP+++P LT ++ S +L +L + IF+P++ YTLW Y Sbjct: 273 FAGLV---VGLFPYLIP------RQLTFMEAASPDSSLLFLLPGICIFVPLICTYTLWGY 323 Query: 359 YKMWGRMT 366 G++ Sbjct: 324 RVFSGKVE 331 >UniRef50_C5A672 Cytochrome bd ubiquinol oxidase, subunit II (CydB) n=2 Tax=Thermococcus RepID=C5A672_THEGJ Length = 331 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 113/369 (30%), Positives = 177/369 (47%), Gaps = 45/369 (12%) Query: 3 DYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQV 62 DY T W+ +L +++ DGFD+GIG LL L+ +N +R I+IN++G W+GN+V Sbjct: 2 DYAT---AWFYFSAFLLGMYLAFDGFDLGIGALLALI-KNQKDRDILINTIGPVWDGNEV 57 Query: 63 WLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAG 122 W I G LFA WP +YA FS FY+A+ L+ L FR + F++R K +++WD Sbjct: 58 WFITWGAGLFAMWPALYATLFSTFYLAIWLLAFLLIFRAVGFEFRNKN-----KELWDKL 112 Query: 123 LVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVIL 182 + S + P+V G+ GNL++G+P + GS L P+PL+ GL L I Sbjct: 113 FALVSALIPLVVGVVVGNLVMGIPIDAN-----GFHGSLLTLFRPYPLIVGLFILFATIW 167 Query: 183 QGGVWLQLKTVGVIH--LRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 G W KT G + LR +V+L + G +W + L+ P Sbjct: 168 HGANWGVYKTTGKLQEELRGYAFKFWLLTVVLLLLTVIGMKIWAPLRFERLMT-----PL 222 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 + LV ++ G LL I +G F ++ L Sbjct: 223 GLGLTLVILVAG-----------------------LLDGHLIKKGEERLAFYISWLAFPL 259 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 V+F +++P+ + S+ P L++ D +S LTL +L + +I I++ YTL+ YK Sbjct: 260 VVFLVYYSMYPYWVISTTDPNFKLSIHDLAASPLTLKAVLGVSVILAVIIMAYTLYV-YK 318 Query: 361 MWGRMTTET 369 M+G TE Sbjct: 319 MFGGKVTEA 327 >UniRef50_Q2SP33 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SP33_HAHCH Length = 331 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 106/366 (28%), Positives = 176/366 (48%), Gaps = 50/366 (13%) Query: 10 IWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGG 69 I+ LLI V ++++++ DGF +G+G L P +++ DD R I I S+ W+ NQ WL+ G Sbjct: 6 IYLLLIAVGVLMYVLLDGFSLGVGILSPWLSKADD-RAIAIKSLSHLWDSNQTWLVFGGV 64 Query: 70 ALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLV 129 LFA +P+ YA S Y+ +IL+L +L FR +AF++ K + R WD GS + Sbjct: 65 VLFAGFPKAYATVLSQLYLPIILMLIALIFRGVAFEFYFKSHTS--RGWWDFSFSFGSTL 122 Query: 130 PPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQ 189 + GI G+L+ G P ++ + F L+T L+CG L G WL Sbjct: 123 ATLSQGIVLGSLVQGFSLEPQPSEQIAWFTPF-SLMTAVALVCG------YALLGSCWLV 175 Query: 190 LKTVGVIHLRSQLATKRAALLVMLC--FLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLV 247 K+ G R Q++ +R ++ + F LA +W +LLAQ + + Sbjct: 176 RKSSG----RLQVSVRRLGIISLFAVMFFLALVSVW------MLLAQP-----QVFQRWL 220 Query: 248 AVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPG----WGFLMASLMQFGVIF 303 W + +PV PLL + L + G G MA FG+ F Sbjct: 221 -----TWPTGLLLAPV----PLLSAYVGLRLWQMLRSGEGNDLKPLGLAMA---LFGLAF 268 Query: 304 TA-GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMW 362 +FP+++P LT+W++ + + + S L+ +++FLPIV+ Y +++Y Sbjct: 269 IGLAAGMFPYIIP------GQLTIWEAIAPERSTSFTLIGIVLFLPIVIAYNIYNYRVFS 322 Query: 363 GRMTTE 368 G+ T+ Sbjct: 323 GKTNTQ 328 >UniRef50_B2SK06 Cytochrome D ubiquinol oxidase, subunit II n=5 Tax=Gammaproteobacteria RepID=B2SK06_XANOP Length = 339 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 100/374 (26%), Positives = 179/374 (47%), Gaps = 44/374 (11%) Query: 1 MFDYET-LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEG 59 M D T L W+ +IG ++++++ DGF +GIG L P +++ + +++N+ W+G Sbjct: 1 MMDMATVLTVAWFAVIGFGVLMYVVLDGFVLGIGILAPF-RKDEAQLDLMMNTAAPIWDG 59 Query: 60 NQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMW 119 N+ WL+L G L AA+P+ Y S Y+ ++L++ +L FR +AF++R K R R++W Sbjct: 60 NETWLVLCGAGLLAAFPKAYGVILSALYLPVLLMVMALVFRGVAFEFRFK--AHRSRRLW 117 Query: 120 DAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGM 179 +GS++ G+ G L+ G+P Y+G W +PF +L G + Sbjct: 118 SHAFAVGSILATFAQGVILGALVQGLPIKHD-----RYVGGIWGWFSPFAMLTGAALVFG 172 Query: 180 VILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGP 239 L G WL LKT G + ++ ++ + V+ L WL P Sbjct: 173 YALLGSTWLILKTEGHVQQLARQLSRPLTISVLTFIGLVSAWL----------------P 216 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVM---AIYRGRPGW-GFLMAS 295 S L + + W F + LW+ P PLL + A++R + Sbjct: 217 S-----LQSHVMERW---FSGAHYLWLMP-----VPLLVAIVGFALWRATDAERSEALPF 263 Query: 296 LMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTL 355 L+ G+ + L + P V P+ T+W + + + ++V +++ LP++L YT+ Sbjct: 264 LLAMGLFVLGFLGLVLGMWPYLVPPV--YTIWQAAAPPSSQLFVMVGLVMLLPLILGYTV 321 Query: 356 WSYYKMWGRMTTET 369 WSY+ G++TT+ Sbjct: 322 WSYHVFRGKVTTDN 335 >UniRef50_B0VC09 Ubiquinol oxidase subunit II, cyanide insensitive n=183 Tax=Proteobacteria RepID=B0VC09_ACIBY Length = 351 Score = 117 bits (292), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 98/359 (27%), Positives = 169/359 (47%), Gaps = 48/359 (13%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW +IG+ ++++++ DGFD+GIG + P + +N ER +++N+V W+GN+ W++L Sbjct: 21 LSLIWVGIIGLGVLIYVVMDGFDLGIGIMFPFI-KNSQERDVMMNTVAPVWDGNETWMVL 79 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 G L+AA+P VY+ S Y+ +I ++ +L FR +AF++R K R + +WD + G Sbjct: 80 GGAGLYAAFPLVYSTVLSALYLPIIFMVIALIFRGVAFEFRFK--AHRTKHLWDLAFIWG 137 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVE---YLGSFWQLLTPFPLLCGLLSLGMVILQ 183 S++ + GI G + G+ + E + G + LT F + G+ + M Sbjct: 138 SVLTSFLQGIILGAYIQGI--------KTENGIFAGGPFDWLTAFSIFTGIGVVAMYATL 189 Query: 184 GGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPL 243 G WL LKT + R + + +++ F G V L P Sbjct: 190 GCGWLILKTEKGLQQRMYELMPKLIIALLIIF------------GAVSLYTPLTHPE--- 234 Query: 244 MKLVAVLPGAWM---NNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 + W N F SPV P+L L + A + + F+ + F Sbjct: 235 ------IADRWFSLPNLFYFSPV----PILVLLFVGLILSACKKQQDHKPFIYTLALVFL 284 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359 I+L+P ++P SV T+W + + + LV LI +PI++ YT+ SY+ Sbjct: 285 AFTGFVISLWPNIIPPSV------TIWQAAAPHSSQMFALVGALILIPIIITYTIVSYW 337 >UniRef50_Q5ZZ11 Cytochrome D ubiquinol oxidase subunit II, cyanide insensitive n=5 Tax=Legionellales RepID=Q5ZZ11_LEGPH Length = 329 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 101/369 (27%), Positives = 178/369 (48%), Gaps = 50/369 (13%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L FI+ L+G I+++++I DGFD+GIG L P + ++ ER ++NS+ W+GN+ WL+ Sbjct: 2 LPFIFATLLGFIVLMYVILDGFDLGIGILFPFTS-SESERDKMMNSIAPVWDGNETWLVF 60 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 G L+ A+P+VY Y+ ++L+L +L FR ++F++R K R + +W+ I Sbjct: 61 GGAMLYGAFPQVYGLLLPILYMPIMLMLIALIFRGVSFEFRFK--AKRSKTLWNWSFSIS 118 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S+ + G+ G + G + + W LTPF L G+ + L G Sbjct: 119 SVAATFLQGVILGAFVQGFSIN---ESSMTINDPDW--LTPFSLCTGIALVCGYALLGST 173 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 W+ +K+ G L+ ++ LLV++ F L +W + + + + P+ Sbjct: 174 WMIIKSTG--RLQRKMVHYARGLLVLVSFFLLFVSIWTPLHSEEVFHRWYSFPN------ 225 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIY-------RGRPGWGFLMASLMQF 299 VL + PL PL+ +MAIY G F+ + ++ Sbjct: 226 ----------------VLLLSPL-----PLIALMAIYLVWQNLNSGSEYKPFIYSIIIFL 264 Query: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359 I+++P+++P V TLW++ + TL +L+ V I LPI+L YTL++YY Sbjct: 265 CSYIGIAISVYPYLIPHQV------TLWEAAAPDSTLVFILIGVAIMLPILLAYTLYAYY 318 Query: 360 KMWGRMTTE 368 G+ + Sbjct: 319 LFRGKSSEN 327 >UniRef50_C8WEN7 Cytochrome d ubiquinol oxidase, subunit II n=14 Tax=Proteobacteria RepID=C8WEN7_ZYMMN Length = 340 Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 89/367 (24%), Positives = 170/367 (46%), Gaps = 43/367 (11%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L +W L V ++++++ DGFD+GIG L +++ R +++N++ W+GN+ W++ Sbjct: 8 LPVVWACLAAVGILIYVVLDGFDLGIGILFA-TQKDEKHRDVMMNTIAPVWDGNETWMVF 66 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 G L A+ Y+ Y+ +I++L +L FR +AF+YR R +W A + G Sbjct: 67 GGAVLLGAFQTAYSVILPALYLPLIVMLLALIFRGVAFEYRVHAHSKEARCLWGAAFMGG 126 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGL-LSLGMVILQGG 185 S + G+ G LL G+ + GS L PF + CG+ L +G +L G Sbjct: 127 STLATFCQGMVLGGLLQGI-----KTTDHHFTGSALDWLNPFSIFCGVALVIGYGLLGAG 181 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 WL +T G + ++ A + L+++C + W P+++ Sbjct: 182 -WLIWRTEGELQAYARRAARCLGSLLLVCIAVVAVW-------------------TPMLR 221 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMA----SLMQFGV 301 + W N+ + + +L ++ ++ G+ FL A L G+ Sbjct: 222 --STYLNTWTNSSSHAVAAVVLAVLAVLVSVIFFRSLKSGKDRTPFLCALGWFILSYLGL 279 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 +A +P+++P + T+W ++S + + +LV +I LP+VL YT++ Y Sbjct: 280 ALSA----WPYIVPPYI------TIWQASSPVTSQTFLLVGTVILLPLVLAYTIYCYKIF 329 Query: 362 WGRMTTE 368 G++T+ Sbjct: 330 HGKVTSS 336 >UniRef50_A8GFS1 Cytochrome d ubiquinol oxidase, subunit II n=19 Tax=Proteobacteria RepID=A8GFS1_SERP5 Length = 335 Score = 114 bits (285), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 69/193 (35%), Positives = 104/193 (53%), Gaps = 7/193 (3%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW+++I +++++ DGFD+GIG L P V ++ +R +++N+V W+GN+ WL+L Sbjct: 5 LPLIWFVIIVFSTMMYVVMDGFDLGIGILFPWV-KDSGDRDVMMNTVAPVWDGNETWLVL 63 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 G ALF A+P YA + + L+L L FR +AF++R K A A R +WD + G Sbjct: 64 GGAALFGAFPLAYAVILDALAIPLTLMLFGLIFRGVAFEFRFK-ATAEKRHIWDKAFIWG 122 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S+ G+ G ++ G P Y G LTPF L CGL + L G Sbjct: 123 SVFATFSQGVVVGAIIKGFPVN-----GRTYAGGALDWLTPFALFCGLGLVVTYALLGCT 177 Query: 187 WLQLKTVGVIHLR 199 WL +KT G + R Sbjct: 178 WLVMKTAGDLQAR 190 >UniRef50_B6IQW9 Ubiquinol oxidase subunit II, cyanide insensitive n=32 Tax=Proteobacteria RepID=B6IQW9_RHOCS Length = 339 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 106/345 (30%), Positives = 165/345 (47%), Gaps = 35/345 (10%) Query: 21 VFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYA 80 ++++ DGFD+G+G L P D +R +++NSV W+GN+ WLIL G ALFA +P YA Sbjct: 22 MYVLLDGFDLGVGILFPWAPGGDADRDLMMNSVAPIWDGNETWLILGGAALFAGFPLAYA 81 Query: 81 AAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGN 140 Y+ ++L+L +L FR +AF++R K AD R++WD +GSL G+ G Sbjct: 82 VLLPALYLPLLLMLIALIFRGVAFEFRFK-ADTS-RRLWDWSFHLGSLFATFAQGVILGG 139 Query: 141 LLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRS 200 + G F Q R +Y G + LTPF ++ G+ + L G WL +KT G + S Sbjct: 140 FIQG----FEVQGR-DYAGGLFDWLTPFSIMTGVALVAGYALLGAAWLVMKTDGALQDWS 194 Query: 201 QLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVE 260 A L V++ + W L DA + LP N + Sbjct: 195 YRVAGLALLAVLVFIAVVSLW--------TPLHSDA------IRDRWFSLP----NLYYL 236 Query: 261 SPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSP 320 SPV PLL A+ R R F++A + I+L+P+++P + Sbjct: 237 SPV----PLLTAAVAAALFGALRRRRETAPFVLAMGLFLLSYLGLAISLWPYLVPPA--- 289 Query: 321 ISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 TLWD+ S + +LV + +P LLYT ++Y+ G++ Sbjct: 290 ---FTLWDAASPPESQVFLLVGLAFLIPTTLLYTAFTYWVFRGKV 331 >UniRef50_C0R3J3 Cytochrome d ubiquinol oxidase, subunit II n=31 Tax=root RepID=C0R3J3_WOLWR Length = 340 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 110/378 (29%), Positives = 183/378 (48%), Gaps = 51/378 (13%) Query: 1 MFDYETL---RFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHW 57 MFD+ +L IW LLI + ++++++ DGFD+GIG LLP A +D R +I+S+ W Sbjct: 1 MFDFSSLINLPLIWGLLIAIAVLLYILMDGFDLGIGILLPF-APSDKCRDHMISSIAPFW 59 Query: 58 EGNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRK 117 +GN+ WL+L GG LFAA+P Y+ FY+ +I++L L R ++F++R K A+ ++R+ Sbjct: 60 DGNETWLVLGGGGLFAAFPLAYSILMPAFYIPIIIMLLGLIVRGVSFEFRFK-AEGKYRR 118 Query: 118 MWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSL 177 +WD GSL G+ G + GV + G + + F ++ G+ + Sbjct: 119 LWDYAFHFGSLGAAFCQGMILGAFIHGVEVN-----GRNFSGGQFDWASAFSVMTGIAVI 173 Query: 178 GMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDAN 237 L G WL +KT + + A K A+ + GFV + Sbjct: 174 FGYALLGSTWLIMKTENITQ---EWARKVASYTL----------------GFVGIFMGLV 214 Query: 238 GPSNPLMKLVAVLPGAW--MNNFV---ESPVL--WIFPLLGFFCPLLTVMAIYRGRPGWG 290 P + + W M NF P+L W+F +L F L YR Sbjct: 215 SVVTPFLN--ERIKNFWFSMPNFYYLFSIPLLTSWLFFMLWF--DLQNTKREYR-----P 265 Query: 291 FLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIV 350 F ++ + F GI+++P+++P T+ D+ +S +LS+ML++++ LPI+ Sbjct: 266 FFLSIAIFFMGYLGLGISIYPWIIPFQY------TILDAAASGPSLSLMLIVIIPLLPII 319 Query: 351 LLYTLWSYYKMWGRMTTE 368 L YT + YY G+ E Sbjct: 320 LTYTGYCYYVFRGKSNYE 337 >UniRef50_D2B3F0 Cytochrome d ubiquinol oxidase subunit II n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B3F0_STRRD Length = 332 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 101/344 (29%), Positives = 161/344 (46%), Gaps = 39/344 (11%) Query: 27 GFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGF 86 GFD G LLPL R++ RR V+ ++G ++ GN+VWL+ A G LF A+P + SG Sbjct: 21 GFDYGAQLLLPLAGRDEGGRRRVLAALGPYFFGNEVWLVAAAGVLFGAFPLLEGTLLSGL 80 Query: 87 YVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVP 146 Y+ ++L+L L A RG+ A R++WD +V G +P + G G LL GVP Sbjct: 81 YLLVVLLLLGLVAGKAAVQLRGRSQSAAARRVWDVLIVAGGAIPAFLMGTLIGLLLAGVP 140 Query: 147 FAFTPQLRVEY--LGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLAT 204 LR ++ + S +L PF LL G+ + ++I GG +L L+T G + R+ A Sbjct: 141 ------LRGDHGFVLSPGDVLHPFVLLAGVTGVLLLIGHGGAFLSLRTTGEVASRADSAA 194 Query: 205 KRAAL-LVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPV 263 + A + L +G+ P NPL+ A + + Sbjct: 195 RSALTWAAAAVVVTFAAGLALGVR-----------PPNPLVATAATV------------L 231 Query: 264 LWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISS 323 L + PL G A+ GRPG F + + AG++ FP+++ SS P S Sbjct: 232 LAVLPLAG-------RRALRYGRPGRAFTATAAAVALPVPLAGLSTFPYMLVSSADPRHS 284 Query: 324 LTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTT 367 LT + + TL + ++ LP++L Y + ++ GR+ Sbjct: 285 LTFTEVAADAATLETLTAFGVVLLPVMLGYQAFGWWAFRGRVEA 328 >UniRef50_UPI0001C321E0 cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C321E0 Length = 449 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 111/200 (55%), Gaps = 5/200 (2%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M D L+ +W + I V+ V++++ +GFD G+G LL V R+ +RR+ ++++G W N Sbjct: 1 MADLTLLQSVWLVAIAVLWVLYLVLEGFDFGVGMLLRRVRRDQLDRRVALHAIGPTWAAN 60 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 +VW+I+A +F A+P YAA SG Y+ + +VL S+ R + GK D RWR W+ Sbjct: 61 EVWVIVAVVGMFGAFPGWYAAWASGLYLPLAVVLLSIVARNAGIELLGKREDERWRLRWE 120 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 + + S V P +G+ + + G+ E +GS ++TP+ +L GL + + Sbjct: 121 RVIELSSTVAPFCWGLMWAATVHGLSLRGE-----EVVGSPLDVVTPYSVLGGLALVALC 175 Query: 181 ILQGGVWLQLKTVGVIHLRS 200 QG +L L+T G + R+ Sbjct: 176 RAQGAAFLMLRTDGGVRSRA 195 >UniRef50_C0XPN4 Cytochrome bd ubiquinol oxidase subunit II n=2 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XPN4_9CORY Length = 334 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 103/365 (28%), Positives = 167/365 (45%), Gaps = 39/365 (10%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVA-----RNDDERRIVINSVGAHWEGNQ 61 L IW+L I V+ F + +GFD G+G LLP V ND R ++++G W+GN+ Sbjct: 3 LNTIWFLGIAVLFAGFFVLEGFDFGVGMLLPFVGGDTPEDNDRRRTAQVSTIGPLWDGNE 62 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWL+ A A+FAA+P YA SGF+ +L+L L R ++ ++R K A+WR+ D Sbjct: 63 VWLVTAAAAIFAAFPEWYATLLSGFFFLFVLILVGLIVRGVSLEWRVKGKTAQWRRRCDI 122 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 G GS +P ++G+ F NL+ GVP ++ + F L P L GL + + Sbjct: 123 GTTFGSYLPAFLWGLIFTNLVAGVPLNDKGRIS-SFTDGFVGLFNPLGLAGGLAFVLLFA 181 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 L G +++ LK + R++ LA WL P+ Sbjct: 182 LHGAIFVALKAHEPLRGRAR--------------TLALRWL--------------AAPT- 212 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 +V++L W+ N + WI + + A + R G+ F ++ V Sbjct: 213 ---AIVSLLYVVWLQNVAGAQWTWIAVAVAALGIAAAIGATFANRDGFAFAATTIAIAAV 269 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 +LFP V+ S+ S ++ + S+ TL IM +I LP V++ WS++ Sbjct: 270 CVVLFGSLFPDVIRST-SAHPGWDIYSAASNPYTLRIMSWAGIIILPAVIVAQAWSFWSF 328 Query: 362 WGRMT 366 R+ Sbjct: 329 RQRVK 333 >UniRef50_B4RAL0 Cytochrome oxidase, subunit II n=2 Tax=Proteobacteria RepID=B4RAL0_PHEZH Length = 341 Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 102/377 (27%), Positives = 165/377 (43%), Gaps = 57/377 (15%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW +I + ++++++ DGFD+G+G L P A + ER +++SV W+GN+ WL+L Sbjct: 5 LPLIWAGIIAIAVLMYVLLDGFDLGVGILFPF-AGSPAERDTMMDSVAPVWDGNETWLVL 63 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GG LFAA+P Y A Y+ ++++L +L R +AF++R R ++ W A G Sbjct: 64 GGGGLFAAFPAAYGALMPALYIPILIMLMALILRGVAFEFR-LRGRRRGKRFWTAAFAGG 122 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S+ + G G + GV ++ G + LTP+ LL L L G Sbjct: 123 SIAATLAQGFVLGGFIQGVTLR-----EGQFAGGAFDWLTPYTLLVAAGLLAGYALLGAT 177 Query: 187 WLQLKTVGVIHLRSQ--------------LATKRAALLVMLCFLLAGYWLWVGIDGFVLL 232 WL KT +H R++ A LLV +A W GF Sbjct: 178 WLIWKTEDELHGRARRWAWLSTAATAALLAVVSVATLLVHPR--IAERW------GF--- 226 Query: 233 AQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFL 292 QD + ++ L+A+ PL+G ++ + R G FL Sbjct: 227 -QDGGINTGEILPLLAI------------------PLVGLAGLIMVAAGLRRRSHGLPFL 267 Query: 293 MASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLL 352 A + + FP ++P +T + S+ L +MLV V I LP +L Sbjct: 268 GAFAIFLSGYLGLAVGFFPNIVP------YDMTFRQAASADNALGLMLVGVAILLPFILG 321 Query: 353 YTLWSYYKMWGRMTTET 369 YT W Y+ G+++ + Sbjct: 322 YTAWVYWVFRGKVSADA 338 >UniRef50_C0G2G6 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Natrialba magadii ATCC 43099 RepID=C0G2G6_NATMA Length = 331 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 98/364 (26%), Positives = 164/364 (45%), Gaps = 49/364 (13%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 E+L +W+ L+ L V+++ DGFD G+G L ++ +R +++ + G W+ N+VWL Sbjct: 13 ESLPEVWFGLVVFALGVYLLLDGFDFGLGILF--AEADESDREVLLAAFGPLWKANEVWL 70 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 +L G LFA +P VYA S Y+ + +L +L R L R + D W + WDA V Sbjct: 71 VLFGTVLFAGFPAVYANILSRHYLLVFAILLALSLRGLGSKLREERDDEEWVRFWDACFV 130 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQG 184 GS+ P + G+ + +LG A L PL+ G+ + + I+ G Sbjct: 131 AGSIASPFLLGVFVASWVLGEASA----------------LAIAPLVVGVTVVALSIVLG 174 Query: 185 GVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLM 244 +L +KT G + ++A + + F+L L+V G Sbjct: 175 AAFLGVKTRGELRDHVTRRGRQATGIYVGLFVLTAITLFVQYPG---------------- 218 Query: 245 KLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFT 304 L VL A V + V++ + TV A +R R FL A+ + + Sbjct: 219 -LHTVLLSASTAAIVVATVVF---------SIATVFAAFRERYHAAFLGAAGLAAAFVVF 268 Query: 305 AGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 G L+P ++ P + L++ D+ S L L++ + IF+PI++ Y L+ Y G Sbjct: 269 VGTLLYP-----AIDPAAGLSVRDAVVSPLPLNMTTIFAAIFMPIIVGYFLFLYSLFSGP 323 Query: 365 MTTE 368 T E Sbjct: 324 ATPE 327 >UniRef50_A6W8I8 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W8I8_KINRD Length = 346 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 71/197 (36%), Positives = 105/197 (53%), Gaps = 5/197 (2%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M + L +W+ + + V+F + +GFD G+G L PL+ R D ER + +VG W+GN Sbjct: 1 MTSWVDLPVLWFGVTVLAWVLFFVLEGFDFGVGFLGPLLGRTDAERGAALRTVGPVWDGN 60 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 +VWL+ A G FAA+P YAA SG Y+ MI +L L R +A ++RGK A W + D Sbjct: 61 EVWLVAAIGVTFAAFPDWYAALLSGLYLPMIALLLLLAVRGVAIEFRGKHDSASWHRRCD 120 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLG---SFWQLLTPFPLLCGLLSL 177 A L SL+ +G G L+ G+ A P V G S +L P+ +L G + Sbjct: 121 AFLATSSLLLAGTWGAVLGALVTGL--ALDPGGEVHGGGLSRSLAPILGPWAVLGGFAGV 178 Query: 178 GMVILQGGVWLQLKTVG 194 + + G +L L+T G Sbjct: 179 LLTTVHGATFLALRTTG 195 >UniRef50_C7HZB4 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Thiomonas intermedia K12 RepID=C7HZB4_THIIN Length = 341 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 95/373 (25%), Positives = 170/373 (45%), Gaps = 52/373 (13%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 + L +W+L+IG+ +V +++ DGFD+G+G L V + R++++ S+G+ W+ N+ W Sbjct: 10 HHVLATVWFLIIGLFMVFYVVLDGFDLGVGVLSLFV--GERRRKVMMASLGSIWDANETW 67 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L++ GG LF A+P Y G Y+ +IL+L R ++F++ + + W A Sbjct: 68 LVVIGGTLFGAFPLAYGTVLHGLYIPIILMLLGFMLRGVSFEFH---ELSERKAFWGAMF 124 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 +GSL+ + G A G LL GV + Y+GS W+ L+PF ++ L + + Sbjct: 125 GLGSLLATIAQGFALGGLLNGVKV-----VNGVYVGSVWEWLSPFSVIVVLGVVAGYAML 179 Query: 184 GGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGP---- 239 G +L +KT I +R LL W+ + + V + P Sbjct: 180 GSTYLIIKTKDDIQAGCY---QRGQLLA---------WIMLAVGAVVTVWTPLQFPQIFA 227 Query: 240 ---SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASL 296 + P + AVLP + +FV +L P + M I+ F A L Sbjct: 228 RWLTIPNIYFFAVLPALALLSFVM--LLRALKRQAEVAPFVWTMLIFL------FSFAGL 279 Query: 297 MQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLW 356 T +P+++P SLT+ + S TL ML+ + + +P+++ Y ++ Sbjct: 280 AA---------TWYPYIVP------GSLTIDQAASDSGTLVFMLIGIGMLIPVMITYNVY 324 Query: 357 SYYKMWGRMTTET 369 Y G++ + Sbjct: 325 QYIVFRGKIDPDA 337 >UniRef50_A4SZB4 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 RepID=A4SZB4_POLSQ Length = 328 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 98/366 (26%), Positives = 174/366 (47%), Gaps = 63/366 (17%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 + IW L+ +++ ++I DG+D+G+G L+PL+ R+D ER +++SV W+ N+ WL+L Sbjct: 5 ITLIWGGLLAFVVLAYIIFDGYDLGVGILIPLM-RSDQERAQMLSSV-RLWDANETWLVL 62 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRK-----MWDA 121 GG LFA +P Y+ F Y+ +I +L SL RG +++ RW+ +WD+ Sbjct: 63 GGGGLFAVFPLAYSIIFPALYLPLIGMLLSLVI-------RGVVSEFRWQNKQSAMIWDS 115 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGL-LSLGMV 180 +GS + G+ G L+ G+ + Y G LTPF ++ G+ L+LG Sbjct: 116 LFFVGSFLAACFQGMILGALVQGIQV-----VDHAYAGGPLDWLTPFSVMTGIALALGYS 170 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 +L G WL LKT G + ++ K L++L + W Sbjct: 171 LL-GATWLVLKTDGELQNKAFSLIKVLGSLMVLMVGVVSLW------------------- 210 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIY------RGRPGWGFLMA 294 P +K +++ W + PLL AI+ R W +A Sbjct: 211 TPFLK----------QDYLSRWFAWPQAIYVLPVPLLLAAAIFILFRAVNRRNTWVPFVA 260 Query: 295 SLMQFGVIFTA-GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLY 353 ++ F + + I++FP+V+P ++ TLW++ + + +L LI +PI+L+Y Sbjct: 261 TISIFLLSYIGLLISIFPYVVPDTI------TLWEAAAPLSSQKFLLPGTLILVPIILIY 314 Query: 354 TLWSYY 359 T ++++ Sbjct: 315 TTYAHW 320 >UniRef50_D0L0A7 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Gammaproteobacteria RepID=D0L0A7_HALNC Length = 348 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 101/188 (53%), Gaps = 5/188 (2%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 Y+ L FIWW+LIG+ +V+++I DG D+G G + L + +ER ++ S+ W+ N+ W Sbjct: 11 YQWLTFIWWVLIGLFVVLYIILDGADLGSG-IYSLFNSDSEERGAIMASMAGTWDANETW 69 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L++AGGA+F +P Y + F + +++VL + R ++ ++ R R +WD G Sbjct: 70 LVVAGGAIFGTFPLAYGSLFHYLMIPLMVVLWGIIIRAVSLEFHHY--SKRSRALWDWGF 127 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 IGSLV G+ G L G F T + G LTPF +L G ++ L Sbjct: 128 GIGSLVTTFGAGVCLGAFLQG--FQMTTGQVPTFGGGALDFLTPFSILTGFTAVIAASLA 185 Query: 184 GGVWLQLK 191 GG +L+ + Sbjct: 186 GGAYLRAR 193 >UniRef50_A8V528 Beta and gamma crystallin:Cytochrome bd ubiquinol oxidase, subunit II n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V528_9AQUI Length = 242 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 80/265 (30%), Positives = 128/265 (48%), Gaps = 34/265 (12%) Query: 107 RGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLT 166 K W+ WD +G+ VP ++FG+A GN +LG+P + Y G+F QLL Sbjct: 4 ETKKESKTWKAAWDIAYWVGNTVPALLFGVAVGNAVLGIPI----DEKGVYHGTFIQLLN 59 Query: 167 PFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGI 226 P +L G +SL M ++ G +L +KT G + A K A VG Sbjct: 60 PTAVLMGFVSLFMYLMHGTAYLLIKTEGK---PFEFAKKGAV---------------VGF 101 Query: 227 DGFV--LLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYR 284 GFV L+ D ++A+ P ++N F + P+ WI P L +L + Sbjct: 102 IGFVASLILAD--------FFIIAIKPTLFLN-FFDYPLFWIAPFLMILGLVLYFKYLVV 152 Query: 285 GRPGWGFLMASLMQ-FGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIV 343 + S++ G + T + +P + SS+ +LT+W+S SS LTL+IML+ Sbjct: 153 DEKYNKVIYGSILTILGTVLTIALASYPVFIHSSIDEKYNLTIWNSASSDLTLTIMLIST 212 Query: 344 LIFLPIVLLYTLWSYYKMWGRMTTE 368 LIFLP+++ YT++ Y G+++ E Sbjct: 213 LIFLPLIIGYTVYVYRVFKGKVSAE 237 >UniRef50_C4XJ24 Putative cytochrome d ubiquinol oxidase subunit II n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XJ24_DESMR Length = 336 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 75/240 (31%), Positives = 123/240 (51%), Gaps = 15/240 (6%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 TL +W+ ++ ++L +++ +DGFD+G+G +L LV +N+ R ++I +V W NQ WL+ Sbjct: 6 TLADVWYWILALLLWLYVFTDGFDLGVG-ILCLVEQNEPRRSVMIETVEGVWHANQTWLV 64 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 + GG LF A+P VY + Y+ +L +L R + +YR + D R+ W Sbjct: 65 MLGGVLFGAFPLVYGTVLAALYLPAGFLLFALMTRGMGIEYRPETDDPRF---WSQVFGW 121 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GS+ V G+ G +L G+PF + YLG L PFP+L + L + + Sbjct: 122 GSVAVTVAHGLLLGAILQGMPFD-----GLRYLGGPLDWLAPFPILVAVTLLCLYPMFAA 176 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCF-LLAGYWLWVGIDGFV--LLAQDANGPSNP 242 WL LKT G + ++L R + C LL GY + +DG + L+ + G +P Sbjct: 177 AWLVLKTEGELQDAARLWGIRFGSAAVACLVLLVGY---IALDGSLGHLVGRPGQGGLSP 233 >UniRef50_A9ASF7 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Burkholderia multivorans ATCC 17616 RepID=A9ASF7_BURM1 Length = 326 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/182 (37%), Positives = 101/182 (55%), Gaps = 12/182 (6%) Query: 11 WWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGA 70 W+ + LV +++ DGFD+G+G L A D R +I S+ W+GN WL++AG Sbjct: 6 WFAELAFALVAYLMLDGFDLGVGML---TAFAGDARDEMIASIAPVWDGNGTWLVIAGTI 62 Query: 71 LFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVP 130 LF A+P VY+ Y + L+L L R +A ++R K AR R++WD L +GSL+ Sbjct: 63 LFGAFPSVYSIVLPALYAPLCLMLAGLIMRGVAIEFRHKA--ARSRRIWDVLLFVGSLLA 120 Query: 131 PVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGL-LSLGMVILQGGVWLQ 189 V+ G+ G G+P QLR Y G+ ++ +PF CG+ L+LG +L G WL Sbjct: 121 SVMQGVCVGTYAHGLP---VDQLR--YAGNGFEWCSPFSFWCGVSLALGYALLGSG-WLV 174 Query: 190 LK 191 LK Sbjct: 175 LK 176 >UniRef50_Q4UWQ0 Cytochrome D oxidase subunit B n=3 Tax=Xanthomonas campestris pv. campestris RepID=Q4UWQ0_XANC8 Length = 339 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 88/363 (24%), Positives = 167/363 (46%), Gaps = 39/363 (10%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 E ++ + + +V +++ DG D+G+G L R+D +R ++ S+ W+GN+ WL Sbjct: 8 ELMQHLSAAALAFTVVTYVVLDGTDLGVGMLFA-ANRSDADRHLMAYSILPVWDGNETWL 66 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 +L GG+L A +P YA + YV ++++L +L R +A +YR ++ R R++ D + Sbjct: 67 VLGGGSLLAMFPSAYAIFLNATYVPLVVMLLALICRGVALEYRDQLGTDRRRRVLDVVFM 126 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQG 184 + SL+ G+ G L GV +Y G+ + L PFPL CG+ + +L G Sbjct: 127 VASLLATFCQGVVAGTYLAGVAHRAG-----QYAGNGREWLQPFPLFCGVALVVGYLLLG 181 Query: 185 GVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPL- 243 WL ++ G + R++ + +++ L WL + DA+ S PL Sbjct: 182 ACWLVWRSEGQLQQRARHQARVLGIVLGALLTLGVVWLARLTPIYAQRLGDAH-ISVPLG 240 Query: 244 MKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIF 303 ++ ++ ++ L +F +LG V+A Y G ++A Sbjct: 241 TSVLGLMVAMYLLMRSRHAFLPLFAVLG------VVVATYAG------VLA--------- 279 Query: 304 TAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 ++P V+P + TL + S + +ML+ + +P L Y+ + +Y G Sbjct: 280 ----IVYPMVLPPDI------TLAQAASPPASQGVMLLAFAVLVPCTLAYSSYGFYVFRG 329 Query: 364 RMT 366 ++ Sbjct: 330 KVK 332 >UniRef50_D2S1W8 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Halobacteriaceae RepID=D2S1W8_9EURY Length = 333 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/197 (34%), Positives = 102/197 (51%), Gaps = 21/197 (10%) Query: 10 IWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDD-ERRIVINSVGAHWEGNQVWLILAG 68 IW+ L+ IL +F+ DGFD G+G L R+D ER ++ ++ W+GN+VWL++ G Sbjct: 20 IWFGLVFFILGMFLFLDGFDFGVGILF--ATRDDKHEREQLLAAITPFWDGNEVWLVVFG 77 Query: 69 GALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSL 128 GALFAA+P VYA FS Y+ M +L +L R LA + + D W+K W ++GS Sbjct: 78 GALFAAFPAVYANLFSRHYLLMFAILGALILRGLAPEMYEQREDEPWQKWWGRAFIVGSF 137 Query: 129 VPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWL 188 P GI N LLG L+T ++ GL+ + + ++ G +L Sbjct: 138 TAPFFLGIFIANWLLGTT----------------ALITLPGIVVGLMLVALTVVDGVAFL 181 Query: 189 QLKTVGVIHLRSQLATK 205 +LKT LR + T Sbjct: 182 RLKTRN--ELRDDVRTD 196 >UniRef50_Q03D44 Cytochrome bd-type quinol oxidase, fusion of subunit 1 and subunit 2 n=16 Tax=Bacteria RepID=Q03D44_LACC3 Length = 829 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 60/174 (34%), Positives = 96/174 (55%), Gaps = 7/174 (4%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 L+ I+ +I L++F + DG D G G V + +R+ ++ G W GN+ W Sbjct: 495 SNLQVIFLGIISTELMLFFVLDGADFGAGMATFFVGDDLSKRQQIMKVTGPVWGGNETWA 554 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 + A +FAA+P Y+A SG+Y + L+L L FR ++FDYR + + + WD L Sbjct: 555 VTAFAVMFAAYPGWYSALTSGYYPLIFLMLFFLIFRGVSFDYRNQWHSRHYNRFWDWALF 614 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYL-GSFWQLLTPFPLLCGLLSL 177 IGSL+PP + GI F + + GVP +R ++ S +LTPF +L G+L++ Sbjct: 615 IGSLMPPFLLGIIFSSTVSGVP------IRNGFVYASMGDILTPFSILGGILAV 662 >UniRef50_Q2JM63 Cytochrome d ubiquinol oxidase, subunit II n=30 Tax=Cyanobacteria RepID=Q2JM63_SYNJB Length = 349 Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 93/376 (24%), Positives = 181/376 (48%), Gaps = 52/376 (13%) Query: 10 IWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGG 69 +W+ ++G+ L ++++ DGFD+G+G +L L A ++ R I++ S+G W+ N+ WL+L GG Sbjct: 14 VWFFILGLFLFLYVLLDGFDLGVG-ILSLTASSETRRSILMTSLGNVWDANETWLVLMGG 72 Query: 70 ALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLV 129 +LF ++P YA + Y+ +++++ L R ++F++R +A + +W+ +GS + Sbjct: 73 SLFGSFPLAYATILNALYIPLVIMVVGLILRAVSFEFR---ENADNKLVWNLAFGVGSFL 129 Query: 130 PPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSF----WQLLTPFPLLCGLLSLGMVILQGG 185 + G A G++ G+ RV+ G F W LT LL L + +L G Sbjct: 130 AALGQGFALGSVFEGI--------RVDEAGHFAGSPWDWLTWRTLLVALTLIQGYVLIGS 181 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 +L +KT G + Q + A + LL ++ + S P+M Sbjct: 182 AYLIVKTTGEL----QETYYKTATIATWTTLLGAVFITI---------------STPIMS 222 Query: 246 LVAVLPGAWMNNFVESPVLWIF---PLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVI 302 A P+ +IF P+LG L + ++ R L+ + + F + Sbjct: 223 EQA------RAQLFSPPLFYIFAAIPVLGLLLVALLLRSLRRREEN-SVLVYTFLIFALS 275 Query: 303 FTA-GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 F G +FP ++P SV T++++ +S +L ML + +P++L Y +++Y Sbjct: 276 FIGLGFMVFPNIIPPSV------TIYEAAASPSSLVFMLTFIGFLIPVILSYNIYNYVVF 329 Query: 362 WGRMTTETLRRNENEL 377 G++ + + E ++ Sbjct: 330 RGKIVVQEVAAEEAKV 345 >UniRef50_A0Q8B4 Cytochrome bd-II terminal oxidase subunit II n=16 Tax=Francisella RepID=A0Q8B4_FRATN Length = 320 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 97/369 (26%), Positives = 166/369 (44%), Gaps = 56/369 (15%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW +I L++++I DGF +G+G L PL+ +D ++ I + + W+GNQ WL+ Sbjct: 3 LGLIWLAIIAFALLLYVILDGFALGMGILFPLL--DDHQKDIATSILLPTWDGNQTWLVF 60 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 A + +P +A F Y++ IL++ + R + F++R K + + K WD I Sbjct: 61 ALACFYGMFPIAFAYIFPKIYLSAILLVVMILLRGICFEFRLK-SSQKGIKNWDKLFFIS 119 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S V + G G L++G P SF+ F + G+ + L G Sbjct: 120 SFVATFLQGYIVGELIVGFPH-----------NSFYNF--GFSAVTGITLIFGYSLLGAT 166 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 L LKT G +L TK L + C +LA L +G + L Sbjct: 167 RLILKTEG------ELFTKAKQLAKICCIILAVLMLVIG----------------GMTPL 204 Query: 247 VAVLPGAWMNNFVESPV---LWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIF 303 LP ++N + + L++ ++ F + + A P W S+ F + + Sbjct: 205 YVKLP---LDNLYKMAILGELFLLTIISFLVLIKVIEAKNHALPYW----LSVAIFILTY 257 Query: 304 TAGITL-FPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMW 362 + +TL FP+++P + T + +S TL L+ +I +P++LLYT ++YY Sbjct: 258 ISMLTLIFPYIIPYQI------TYTQAQASDTTLIFTLIPAIIMIPLLLLYTSYAYYIFR 311 Query: 363 GRMTTETLR 371 G+ T E L Sbjct: 312 GK-TKEKLS 319 >UniRef50_D2L7C6 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L7C6_9DELT Length = 337 Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 94/367 (25%), Positives = 163/367 (44%), Gaps = 41/367 (11%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 +L W+ ++ ++L +++ +DG+D+G G +L L + R I+ S+ W NQ WL+ Sbjct: 6 SLADAWFGILALLLWLYVFTDGYDLGAG-ILCLHEADPVHREIMAESIDGVWHANQTWLV 64 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADAR--WRKMWDAGL 123 L GG LF A+P VY + Y+ +L ++ R + +YR K AD + W +++ Sbjct: 65 LLGGVLFGAFPLVYGTVLAALYLPAGFLLFAIMARGIGLEYRMK-ADNKLPWSRLFG--- 120 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 GS+ + G G +L G+ F + + G + +PF +L L + Sbjct: 121 -WGSVAVTLAHGFLLGGVLQGMDFD-----GLHHAGGAFDWFSPFTILVAATFLCLYAFL 174 Query: 184 GGVWLQLKTVGVIHLRSQL-ATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNP 242 G WL KT G + +S++ + + A V + LLAGY G GF L+ + G Sbjct: 175 GAAWLVWKTEGPLQHQSRIWSVRYGAATVGMLVLLAGYIALDGRLGF-LVGRPGQGGLGA 233 Query: 243 LMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVI 302 L V+ FC ++ +I +G + +LM V Sbjct: 234 FFILSLVVA--------------------VFCAAFSIRSIGKGGEVLPLVWCALMLVAVF 273 Query: 303 FTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMW 362 G +L+P ++P LT+ + + L L IML V LP++ LY + + + Sbjct: 274 VAFGGSLYPLIVP------PRLTIEQAAAPPLMLKIMLWTVGSMLPVIFLYNAYHFRLVR 327 Query: 363 GRMTTET 369 G++ E Sbjct: 328 GKVRLED 334 >UniRef50_D0XNI3 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XNI3_9CAUL Length = 345 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/191 (34%), Positives = 103/191 (53%), Gaps = 7/191 (3%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L+ IW LI V +++++ DGFD+GIG L P A++ +ER +++N++ W+GN+ WL+L Sbjct: 5 LQLIWAGLIAVAVLLYVTLDGFDLGIGILFPF-AKSKEERDVMMNTIAPVWDGNETWLVL 63 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GG L AA+P Y+ Y+ ++L+L L R +AF++R + A R RK W G Sbjct: 64 GGGGLLAAFPLAYSVLMPALYLPILLMLAGLILRGVAFEFRFR-ARNRGRKFWTQMFSGG 122 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S++ V G+ G + GV + G + TP+ LL + L GG Sbjct: 123 SILTAVAQGLVLGGFIQGVTVR-----EDRFAGGPFDWFTPYTLLVAAGLVAGYALLGGA 177 Query: 187 WLQLKTVGVIH 197 WL +KT +H Sbjct: 178 WLMMKTKDNLH 188 >UniRef50_A7I116 Cytochrome D ubiquinol oxidase, subunit II n=1 Tax=Campylobacter hominis ATCC BAA-381 RepID=A7I116_CAMHC Length = 368 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 98/387 (25%), Positives = 170/387 (43%), Gaps = 40/387 (10%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 YE L+ WW +I ++ +F+ F G G +L +++ + +++NS+G WE Sbjct: 2 YENLQIYWWFIISLLAGIFVFMS-FVQG-GQMLLFSFKDEKNKDMIVNSIGKKWELTFTT 59 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L++ GGA FAA+P Y+ +F G Y + +L + ++++YR K + +K ++ + Sbjct: 60 LVMFGGACFAAFPLFYSTSFGGAYWVWMAILFCFIIQAVSYEYRKKENNFLGQKCYEIFM 119 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEY---LGSFWQLLTPFPLLCGLLSLGMV 180 +I + + G+A G F+ + V + L L PF L G +L Sbjct: 120 LINGFLGIFLIGVALSTFFSGSEFSLDTRNFVAWKNPLRGLEALFNPFNFLLG-FTLVFA 178 Query: 181 ILQGGVWLQLKTVGVIHLRSQLAT---KRAALLVMLCFLLAGYWLWVGI-DGFVLLAQDA 236 GG + + ++R ++ K AA+ V+ F +A + +W+ + DGF + Sbjct: 179 ARVGGSMYLINHINEDYMRKKIRNFLKKDAAVFVI--FFIA-FLVWISLKDGFCV----E 231 Query: 237 NGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVM-AIYRGRPGWGFLMAS 295 NG +V ++ NF F G +LT + IY+G Sbjct: 232 NG-------VVVTKKFHYILNFFNH----YFIFFGLIISVLTALFGIYKGAFTKSIQGIW 280 Query: 296 LMQFGVIFTAGITLFPFVM------PSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPI 349 GVIF F M PSS SSL++++++SS TL M I +F+P Sbjct: 281 FWGIGVIFAVTFLFFSLGMSGNVFYPSSADLNSSLSIYNASSSFYTLKTMAYIS-VFIPF 339 Query: 350 VLLYTLWSYYKMWGRMTTETLRRNENE 376 VL Y + +W M + + E E Sbjct: 340 VLAYIAY----VWKNMDKTKMSKKELE 362 >UniRef50_C6NVA4 Cytochrome d ubiquinol oxidase, subunit II n=4 Tax=Gammaproteobacteria RepID=C6NVA4_9GAMM Length = 362 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 100/188 (53%), Gaps = 19/188 (10%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 + +L WW+L+G+ V++++ DG D+G G + L+ N+++R V+ S+ W+ N+ W Sbjct: 11 HSSLGTFWWILLGLFFVIYIVLDGADLGAG-VFSLMLENENDRAAVMASMAGTWDANETW 69 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDY--RGKIADARWRKMWDA 121 L++AGG +F A+P VY A F+ + ++ L + R +AF++ K + A W KM+ Sbjct: 70 LVVAGGVIFGAFPLVYGATFNYLMIPLMFALWGIISRAVAFEFHVHAKGSKAFWGKMFG- 128 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVE------------YLGSFWQLLTPFP 169 +GSLV G+A G LLG P + ++ + G+ L+PF Sbjct: 129 ---LGSLVAAFFAGVALGATLLGFPMSKGNAQGIQVANDPFANTVPHFSGNALSFLSPFS 185 Query: 170 LLCGLLSL 177 + G+ ++ Sbjct: 186 IWTGIAAV 193 >UniRef50_B2JUZ0 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Burkholderia RepID=B2JUZ0_BURP8 Length = 329 Score = 90.5 bits (223), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 80/141 (56%), Gaps = 4/141 (2%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 + L ++W+ L+G++L ++++DGFD+G+G L L AR D R +++ S+G W+ N+ W Sbjct: 6 HSLLAYVWFGLLGLMLAFYVVTDGFDLGVGILSLLRARRAD-RDVMVESIGHVWDANETW 64 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L++ GG LF A+P YA Y ++ ++ L R A ++R + +WD Sbjct: 65 LVVLGGGLFGAFPLAYAQLMQDLYSPVMALIAGLIMRGAAIEFRHSVEHG---PLWDKVF 121 Query: 124 VIGSLVPPVVFGIAFGNLLLG 144 IGSL+ + G+ G ++ G Sbjct: 122 GIGSLIAALAQGVVLGKVITG 142 >UniRef50_B2IDR4 Cytochrome d ubiquinol oxidase, subunit II n=19 Tax=root RepID=B2IDR4_BEII9 Length = 337 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 98/365 (26%), Positives = 160/365 (43%), Gaps = 48/365 (13%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW ++ + +++I DGFD+G+G L R++ R +++SV W+GN+ WL+L Sbjct: 8 LPLIWAGILATAVGLYVILDGFDLGLGILF-FTTRDETARDDMMSSVAPFWDGNETWLVL 66 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GG L AA+P Y+ Y+ +IL+L +L R +AF++R A W WD G Sbjct: 67 GGGGLLAAFPLAYSIIMPALYIPIILMLLALILRGVAFEFR--WAAKPWHGFWDVAFAGG 124 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S + + G G L+ G+ + G + +PF LLCG + L Sbjct: 125 STLAALAQGFVLGGLIQGITVK-----DNAFAGGPFDWFSPFALLCGFGLVAGYGLLACC 179 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 WL +KT G + ++ L V+ C + W PL Sbjct: 180 WLLMKTSGGLAAHARRLALPFLLAVVFCAAVVSIW-------------------TPLRY- 219 Query: 247 VAVLPGAWMNNFVESP---VLWIFPLLGFFCPLLTVMAIYRGR---PGWGFLMASLMQFG 300 A + +P LW P L A+ RG P +G + L+ F Sbjct: 220 -----PAIAERWFSTPNIFYLWPLPAATGALAFLVFRALRRGDDFIPFFGVVGIFLLCFA 274 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 + I+ +P+++P S+ LW + + +L ML+ V I LP++L YT++ Y+ Sbjct: 275 GL---AISAYPYLVPHSID------LWQAAGAPESLKFMLIGVSILLPVILGYTIFVYWT 325 Query: 361 MWGRM 365 GR+ Sbjct: 326 FRGRL 330 >UniRef50_UPI000038268B COG1294: Cytochrome bd-type quinol oxidase, subunit 2 n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI000038268B Length = 226 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 20/198 (10%) Query: 3 DYETLRF----IWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWE 58 +YE L +W L+ + + ++++ DGFD+G+G L AR + R ++ SV W+ Sbjct: 7 EYEGLALWLPLVWAGLLALAVAMYVVIDGFDLGVGILFT-AARPGNWRDRMMLSVAPIWD 65 Query: 59 GNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKM 118 GN+ WL+L GG LFA + YA Y+ +IL+L +L FR +AF++R K R R + Sbjct: 66 GNETWLVLGGGGLFAVFSVAYAILLPALYLPLILMLIALIFRGVAFEFRFKA--ERSRAV 123 Query: 119 WDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVE---YLGSFWQLLTPFPLLCGL- 174 WD GSL G+ G AF + E G + LTPF ++ G+ Sbjct: 124 WDNAFHYGSLTATFAQGMVLG--------AFVQSFQTEGRSLSGGTLEWLTPFSVMTGIG 175 Query: 175 LSLGMVILQGGVWLQLKT 192 L G +L+ W +KT Sbjct: 176 LVSGYRLLEAN-WCVMKT 192 >UniRef50_B4RY64 Quinol oxidase, subunit II n=3 Tax=Gammaproteobacteria RepID=B4RY64_ALTMD Length = 335 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 98/202 (48%), Gaps = 17/202 (8%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 E L I+ L+G+ ++++ I DG+D+G+G L+P R + R +I S+G +W+ N+ WL Sbjct: 8 EMLGNIYVGLLGLSVMLYAILDGYDLGVGVLIP--PRTEAFRDDMIASIGPYWDANETWL 65 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 +LA G L A+P ++ Y+ +L L R +AFD+R K+ + RK WD Sbjct: 66 VLAIGLLLIAFPEAHSEFLQTLYLPATFMLLGLILRGVAFDFRAKVVQVKKRK-WDLVFK 124 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQG 184 GSL+ + G G + G LR + + LL F + + G Sbjct: 125 YGSLLTTLAQGYMLGIYVTG--------LRTDIWAQGFALLAAFGVTAAYAFI------G 170 Query: 185 GVWLQLKTVGVIHLRSQLATKR 206 WL LKT G + ++ +R Sbjct: 171 SCWLILKTEGELQQKAYYWARR 192 >UniRef50_B2RJL6 Cytochrome d ubiquinol oxidase subunit II n=56 Tax=Bacteria RepID=B2RJL6_PORG3 Length = 387 Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 99/401 (24%), Positives = 177/401 (44%), Gaps = 40/401 (9%) Query: 3 DYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQV 62 +Y L+ WW L+ ++ + + F G L + +++ +++++NS G WE Sbjct: 2 EYALLQHYWWFLVSLLGALLVFLL-FVQGGQSFLFSLGKDELTQKMMVNSTGRKWEFTFT 60 Query: 63 WLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAG 122 L+ GGALFA++P Y+ +F G Y +L+L + ++++Y+ K + RK + Sbjct: 61 TLVTFGGALFASFPLFYSTSFGGAYWVWMLILFCFIIQAVSYEYQSKHGNVWGRKTYQIL 120 Query: 123 LVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLG-----SFWQLLTPFPL--LCGLL 175 L I ++ P++ G A G F + G S WQ + L L +L Sbjct: 121 LFINGVLAPLLLGTAVSTFFTGSSFVVNKMAMFDLSGGNQIVSAWQPFNGWQLRGLEAVL 180 Query: 176 SLGMVILQGGVWLQLKTVGVIHLRSQL-------ATKR---AALLVMLCFLLAGYWLWVG 225 +L V+L V+ + +++ + + A KR A L F LA + Sbjct: 181 NLWNVVLGLAVFFLARVSALLYFINNIDDESLYAAAKRRLWANTAAFLIFFLAYIAFLLT 240 Query: 226 IDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPL----LTVM- 280 +GF + NP+ K V + P ++ NF++ P + LLG L LT++ Sbjct: 241 TEGFAV---------NPVSKEVYMEPYKYLYNFLDMPAVLAVFLLGVILVLGGIGLTLLR 291 Query: 281 -AIYRG--RPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLS 337 RG G G ++ L V + + PS+ SSLT+ +++SS TL Sbjct: 292 KGFKRGIWLHGTGTVLTVLALLLVAGWNDTSWY----PSTYDLQSSLTIENASSSHFTLK 347 Query: 338 IMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLRRNENELY 378 +M V I +P VL Y +++ + R T+ ++ +Y Sbjct: 348 VM-SYVSILIPFVLAYIFYAWRALDIRKITKKEMEQDDHVY 387 >UniRef50_Q1LCN4 Cytochrome d ubiquinol oxidase, subunit II n=69 Tax=Bacteria RepID=Q1LCN4_RALME Length = 345 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 90/364 (24%), Positives = 161/364 (44%), Gaps = 57/364 (15%) Query: 14 LIGVILVVFMISDGFDMGIGCLLPLVARNDD-ERRIVINSVGAHWEGNQVWLILAGGALF 72 L+G+ +++++I DG+D+G+G LL R DD ++ +I S+G W+ N+ WL+L G L Sbjct: 23 LMGLSMLIYVILDGYDLGVGVLL---RRADDVDKDTMIASIGPFWDANETWLVLGVGLLL 79 Query: 73 AAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPV 132 A+P + + Y+ + L+L L R +AFD+R K D + W+ GSL+ Sbjct: 80 TAFPMAHGVILTQLYLPVALMLAGLIIRGVAFDFRVKARDPH-KPWWNFAFYAGSLLASF 138 Query: 133 VFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKT 192 G+ G + G + L F + GL + L G WL +KT Sbjct: 139 SQGLMLGLYITGFRYDLPNLL--------------FAVAVGLCLVAGYCLLGASWLIMKT 184 Query: 193 VGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPG 252 G + LR+ +R+ LW+ G ++ S + + LP Sbjct: 185 TGNLQLRAIYWARRS--------------LWLTAIGVAAISIVTPMVSERIFEKWFSLP- 229 Query: 253 AWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRP---------GWGFLMASLMQFGVIF 303 N + +P+ PLL ++ + R R W + + + F + F Sbjct: 230 ---NIILLAPI----PLLTMVLFVVIERLLRRMRDLHANGNDRWCWVPFVGTAVIFLLAF 282 Query: 304 TA-GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMW 362 +LFP+++ + + +W + S+ +L ++L+ +I LP +L YT ++Y W Sbjct: 283 NGLAYSLFPYLV------VDRIDIWQAASAPESLMVILIGAVIVLPTILGYTAYAYRVFW 336 Query: 363 GRMT 366 G+ T Sbjct: 337 GKAT 340 >UniRef50_A6Q1A5 Cytochrome bd oxidase subunit II n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q1A5_NITSB Length = 372 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 95/381 (24%), Positives = 176/381 (46%), Gaps = 33/381 (8%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 TL+ WW ++ ++ +F+ F G L L A N++++ +++N++G WE L+ Sbjct: 9 TLQEYWWFIVSLLGGLFLFLT-FVQGGQTKLGL-AGNEEQKDLIVNALGRKWELTFTTLV 66 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 L GGALFAA+P YA +F G Y + +L S + +A++YR K + +K+++ L + Sbjct: 67 LFGGALFAAFPLFYAVSFGGAYGLWMAILFSFIIQAVAYEYRKKPNNFFGQKVYELFLFL 126 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGS---FWQLLTPFPLLCGLLSLGMVIL 182 V + G+A +L G F + +LGS L PF +L GL+ + + L Sbjct: 127 NGTVGIFLIGVALASLFTGAAFKLDDMKHMTWLGSMRGLEALGNPFNILFGLMMVFLARL 186 Query: 183 QGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNP 242 ++ ++ + + A+ L L++ + G++L N Sbjct: 187 NANLYFMF----ILDDPELVEKAKKAIKTDFAIFLV---LFLAVAGWILSMSGVGYEQNK 239 Query: 243 LMKLVAVLPGAWMNNFVESP------VLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASL 296 V+ ++NNF+E P V+ + LLG VMA+ + + F ++ Sbjct: 240 FF----VVAHKYLNNFLEMPFVLGAFVVGVGLLLG-----AVVMALKGVKKAFWFSSTAI 290 Query: 297 MQFGVIFTAGITLFPFVMPSSVSPI-SSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTL 355 G+ + S++ I SSLT+ +S+ S++TL M + L+ +P V+ Y Sbjct: 291 TLVGLSLLLVLGYNHTAYYPSIADIGSSLTIENSSGSRVTLITMSYVSLM-VPFVVGYIA 349 Query: 356 WSYYKMWGRMTTETLRRNENE 376 + +W M ++ L +E E Sbjct: 350 Y----VWRLMDSKPLSEDEVE 366 >UniRef50_C9Q1E8 Cytochrome D ubiquinol oxidase subunit II n=7 Tax=Prevotella RepID=C9Q1E8_9BACT Length = 408 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 89/366 (24%), Positives = 169/366 (46%), Gaps = 22/366 (6%) Query: 1 MFDYETLRFIWWLLIGVI--LVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWE 58 + YE L+ WW L+ ++ L+VF++ F G L+ + + ++ERR+V+NS G WE Sbjct: 28 LMSYEFLQHYWWFLVSLLGALLVFLM---FVQGANTLIFTLGKTENERRLVVNSTGRKWE 84 Query: 59 GNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKM 118 L++ GG FA++P Y+ +F G Y +++L S + ++++++ K+ + + Sbjct: 85 FTFTTLVVFGGGFFASFPLFYSTSFGGAYWLWMIILFSFVIQAVSYEFQNKLGNILGART 144 Query: 119 WDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTP---QLRVEYLGSFWQLLTPFPLLCGLL 175 + L+I ++ PV+ G A G F + + S W L LL Sbjct: 145 FQTFLIINGVLGPVLLGGAVATFFNGSNFIVDKGNITTMAQPVISRWA--NASHGLDALL 202 Query: 176 SLGMVILQGGVWLQLKTVGVIHLRSQLA----TKRAALLVMLCFLLAGYWLWVGIDGFVL 231 L V+L V+ + +G++++ + +A RA + LC ++ +L + V Sbjct: 203 DLWNVVLGVAVFFLARVLGLLYIINNVAHAPVVTRARKQLRLCTVV---FLAFFLSFLVH 259 Query: 232 LAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYR----GRP 287 L +P ++++ P +++N L I L+G L ++ R R Sbjct: 260 LLLKDGYAYDPQTGIISMQPLKYLHNLTTMWYLAIVLLVGVASLLYGIVRTLRDANFNRG 319 Query: 288 GWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFL 347 W + ++ V+ PS+ SSLT+ +S+ S+ TL+ M V+ L+ + Sbjct: 320 IWFGGVGVVLVVLVLLLCAGWNNTAYYPSNTDLQSSLTIANSSGSKFTLTAMSVVSLL-I 378 Query: 348 PIVLLY 353 P VL Y Sbjct: 379 PFVLAY 384 >UniRef50_B9L7C1 Cytochrome bd oxidase subunit II n=2 Tax=Nautiliaceae RepID=B9L7C1_NAUPA Length = 398 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 98/392 (25%), Positives = 182/392 (46%), Gaps = 33/392 (8%) Query: 7 LRFIWWLLIGVI--LVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 L+F WW+++ V+ L +FM F G G L VA+++ E R ++NS+G WE L Sbjct: 15 LQFYWWIIVAVLGGLFLFMT---FVQG-GQTLFHVAKDEIEERGILNSLGRKWELTFTTL 70 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 ++ GGAL+AA+P Y+ +F G Y +L+L + + ++++Y + + + + L Sbjct: 71 VMFGGALYAAFPLFYSVSFGGAYWVWMLILFAFVLQAVSYEYMNRTGNLIGKGAYKFFLY 130 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSF--------------WQLLTPFPL 170 +V V+ G A G G F + P R+ G+ ++ F L Sbjct: 131 FNGVVGIVLIGAAVGTFFTGSNFTYDPATRILEWGTAKDGFNLRGLEAAIDFKHGAWFNL 190 Query: 171 LCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFV 230 G+L + + G +WL + + +A RA +V CF++ L + + G + Sbjct: 191 AMGVLVFAVARILGALWL-INDLDEKDFADVVARLRA--VVKRCFVVLLVALVIVLYGLI 247 Query: 231 LLAQDANGPSNPLMKLVAVLPGAWMNN---FVESPVLWIFPLLGFFCPLLTVMAIYRGRP 287 L A +P V+++ G ++ N F ++ + F + R Sbjct: 248 TLKGYAYDIHDP-KGTVSLVAGKYLQNLLAFGAIQLIVFLVGVVLFVLGVFQSGFGSSRK 306 Query: 288 G-WGFLMASLMQFGVIFT-AGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLI 345 G W + +++ ++FT AG+ F PS SSLT+ +++ S+ TL +M V + Sbjct: 307 GIWAAGLGTVLIGIIVFTLAGLNGTAF-YPSYADLQSSLTIQNASGSKYTLMVM-AWVSV 364 Query: 346 FLPIVLLYTLWSYYKM--WGRMTTETLRRNEN 375 +P VL Y ++ +Y+M G +T E + +++ Sbjct: 365 AVPFVLGYIIYVWYQMKKQGPITKEEILTDDH 396 >UniRef50_B9Z1X7 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z1X7_9NEIS Length = 336 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/194 (32%), Positives = 96/194 (49%), Gaps = 17/194 (8%) Query: 14 LIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFA 73 L+ + L+ ++I DG+D+G+G LLPL A+ ER +I S+G W+ N+ WL+L G L Sbjct: 14 LMAISLLAYVILDGYDLGVGILLPLGAKA--ERDTMIASIGPFWDANETWLVLGVGLLLV 71 Query: 74 AWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVV 133 A+P + Y+ + L+L L R +AFD+R K D + W+A GSL+ + Sbjct: 72 AFPLAHGIILGELYLPVALMLLGLILRGVAFDFRVKARDPH-QPWWNAAFAAGSLLAALS 130 Query: 134 FGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTV 193 G+ G L G F P + W F LL G+ L G WL +KT Sbjct: 131 QGVMLGRYLTG----FAPG------AAAWG----FALLAGVGLAAAYALLGAGWLIMKTR 176 Query: 194 GVIHLRSQLATKRA 207 G + R+ +RA Sbjct: 177 GALQARAIGWARRA 190 >UniRef50_UPI0001B55F87 cytochrome bd-type menaquinol oxidase subunit II n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B55F87 Length = 329 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 63/198 (31%), Positives = 104/198 (52%), Gaps = 7/198 (3%) Query: 10 IWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDE--RRIVINSVGAHWEGNQVWLILA 67 IWW ++G++L + G+D G+G LLP +AR+ DE +R V+ +VG + N+VWL+ A Sbjct: 4 IWWGVLGLLLGGYFALAGYDYGVGMLLPALARSRDEAGQRRVLGAVGPFFLANEVWLVAA 63 Query: 68 GGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGS 127 G LF A+P + F+G YV ++L+L L A R + + R+ W + G+ Sbjct: 64 VGVLFGAFPHLEGRVFAGAYVLVVLLLLGLVTFTAAVQLRSRHPEGS-RRGWTFAITAGA 122 Query: 128 LVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVW 187 LV V +G+ GNL+ G+P + L P+ +L GL + + LQG V+ Sbjct: 123 LVTAVSWGLFLGNLVRGLPL----DAHGRPIDDVLALFNPYAVLWGLGFVALFCLQGLVF 178 Query: 188 LQLKTVGVIHLRSQLATK 205 L ++ + R + T+ Sbjct: 179 LAVRGPAELTGRVRRLTR 196 >UniRef50_C3DRT5 Cytochrome d ubiquinol oxidase subunit II n=2 Tax=Bacteria RepID=C3DRT5_BACTS Length = 121 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/120 (40%), Positives = 66/120 (55%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW+ L GVI V+ I DG+ +G G + P V ++ ER + ++G W GN+VWLI Sbjct: 2 LAIIWFGLWGVIWTVYFILDGYALGNGMIFPFVTKDRQERNQLQEAIGPFWGGNEVWLIT 61 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGGA FAA+P YA FS Y + LVL +LF R ++ K W+K IG Sbjct: 62 AGGATFAAFPVTYANMFSYLYTPLFLVLLALFARAAGLEFMHKDDSPIWQKTCKWAFAIG 121 >UniRef50_C4DN93 Cytochrome d oxidase cyd, subunit II n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DN93_9ACTO Length = 338 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 84/351 (23%), Positives = 142/351 (40%), Gaps = 37/351 (10%) Query: 22 FMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAA 81 + + G D G L + ++ RR + ++G + GN+VWL+ G LF A+P + Sbjct: 18 YFVLGGLDYGAQVLRLWLGGDESARRSTLGALGPFFFGNEVWLVGFAGVLFGAFPFLEGK 77 Query: 82 AFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNL 141 SG Y + +L L A RG+ R R++WD G LVP +G+ L Sbjct: 78 LLSGMYPLFLAILIGLVVGKTAVQLRGRADTVRGRRVWDVLAFAGGLVPAWSWGMLVALL 137 Query: 142 LLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQ 201 L GVP + + QL PF L CG S + + G +L + G ++ Sbjct: 138 LRGVPIGADGHFTL----TGAQLGEPFVLACGAASTALFVTHGAAFLAARVRGAAAGAAR 193 Query: 202 LATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVES 261 R ++ ++ L AG GI V A D + F Sbjct: 194 ALLPRLGVVTVVASLGAG-----GIG--VASAVD--------------------DGFAAP 226 Query: 262 PVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA---GITLFPFVMPSSV 318 L P+ V A+ R GW + + A G+ +P ++ S+V Sbjct: 227 AAAVAVGAL---LPIAVVAAMVASRRGWAKTAVTATGVAALVPALLPGVAHYPRLLVSTV 283 Query: 319 SPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTET 369 S S+T+ + + TL ++ ++ +P++LLY WS++ R+ + + Sbjct: 284 SERYSVTVSHAAADVETLKLLSAFGIVVVPVILLYQGWSWWAFRERVDSGS 334 >UniRef50_C7NNR2 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Halobacteriaceae RepID=C7NNR2_HALUD Length = 338 Score = 77.4 bits (189), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 1/136 (0%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 ++L IW+ +I L ++++ DGFD GIG L +D +R ++ + G W+ N+VWL Sbjct: 15 DSLPEIWFGVIMFALAMYIVLDGFDFGIGMLYA-TREDDHDRETLLAAFGPIWDANEVWL 73 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 I G L AA+P VY+ + Y+ + + +L FR + + R + D W++ D V Sbjct: 74 IAFGTMLLAAFPDVYSRLLADNYLIALGFVLALLFRGVGPELREQREDESWQRACDWSFV 133 Query: 125 IGSLVPPVVFGIAFGN 140 GS + P +FG+ G+ Sbjct: 134 GGSALAPFLFGVLAGS 149 >UniRef50_B2SHW9 Cytochrome D ubiquinol oxidase subunit II n=2 Tax=Xanthomonas oryzae pv. oryzae RepID=B2SHW9_XANOP Length = 85 Score = 77.4 bits (189), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 35/62 (56%), Positives = 44/62 (70%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 + DY TLR IWWLL+GV+L + + GFD+G+G LLP VA ND ERR+VIN+VG W Sbjct: 5 LLDYTTLRVIWWLLLGVLLSGYAVMSGFDLGVGALLPFVANNDAERRLVINTVGPVWRAQ 64 Query: 61 QV 62 V Sbjct: 65 HV 66 >UniRef50_A8EQ33 Cytochrome D ubiquinol oxidase subunit II n=1 Tax=Burkholderia pseudomallei 406e RepID=A8EQ33_BURPS Length = 278 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 77/135 (57%), Gaps = 3/135 (2%) Query: 10 IWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGG 69 +W ++ + ++++++ DGFD+G+G L R++ ER +I SV W+ N+ WL+L G Sbjct: 8 LWAGVLALSVLMYVLLDGFDLGVGMLF-FFHRDEAERDRMIASVSPVWDFNETWLVLGGT 66 Query: 70 ALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLV 129 L AA+P ++ Y ++ +L L FR +AF++RG +A AR + +W IGSLV Sbjct: 67 LLLAAFPGAFSVVVPAVYFPVLAMLLGLLFRGVAFEFRG-VAGAR-KTVWSRAFAIGSLV 124 Query: 130 PPVVFGIAFGNLLLG 144 G+ G + G Sbjct: 125 ATAAQGVVLGMFVQG 139 >UniRef50_B0R8N6 Cytochrome d ubiquinol oxidase subunit II n=2 Tax=Halobacterium salinarum RepID=B0R8N6_HALS3 Length = 331 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 3/137 (2%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDD-ERRIVINSVGAHWEGNQVW 63 ++L +W+ + L ++++ DGFD GIG L R D+ ER + + G W+ N+VW Sbjct: 14 DSLPEVWFGAVVFALGMYIVLDGFDFGIGMLY--ATRTDEHERETFLAAFGPVWDANEVW 71 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 ++ G L AA+PRVY+ + Y+ + + +L FR L + R + D RW++ D Sbjct: 72 IVAFGTMLLAAFPRVYSRLLADNYLLALGFVVALVFRGLGPELREQREDERWKRYTDYAF 131 Query: 124 VIGSLVPPVVFGIAFGN 140 V GS+ P++ G+ G Sbjct: 132 VGGSVFAPLLLGMLAGR 148 >UniRef50_A7ZG70 Cytochrome D ubiquinol oxidase, subunit II n=4 Tax=delta/epsilon subdivisions RepID=A7ZG70_CAMC1 Length = 374 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 94/394 (23%), Positives = 170/394 (43%), Gaps = 46/394 (11%) Query: 5 ETLRFIWWLLIGVI--LVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQV 62 E L+ WW ++ ++ L+VFM+ F G L+ + +++ ++ ++INS+G WE Sbjct: 7 ENLQIYWWFIVSLLGGLLVFMM---FVQGGQSLIFSLGKDELKKDMLINSIGRKWELTFT 63 Query: 63 WLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAG 122 L++ GGA FAA+P YA +F G Y + +L + ++++YR K + + ++ Sbjct: 64 TLVMFGGACFAAFPLFYATSFGGAYWVWLAILFCFIIQAVSYEYRKKPDNFLGARTYEIF 123 Query: 123 LVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSF---WQLLTPFPLLCGLLSLGM 179 L I + ++ G+A G F VE+ F L P+ L G+ + Sbjct: 124 LFINGSLGVILIGMAVSTFFSGSDFVLNEHNFVEWKTPFRGLEALSNPYLYLLGIAMFFL 183 Query: 180 VILQGGVWLQLKTVG---VIHLRSQLATKRAALLVMLCFLLAGYWLWV-GIDGFVLLAQD 235 + G ++L + + R QL L LA WV DGF A + Sbjct: 184 SRIGGCLYLMNNIADGEFIQNARKQLIINTVLFLPFFLGFLA----WVLTKDGF---AYN 236 Query: 236 ANGPSNPLMKLVAVLPGAWMNNFVESPV-----------LWIFPLLGFFCPLLTVMAIYR 284 NG +V+++ + N +E P+ + + G F + + Y Sbjct: 237 VNG-------VVSLVAYKYAINLIEMPIAGILLLVGVLLVLVGIFQGAFTKSIRGIFAY- 288 Query: 285 GRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVL 344 G G +A F + G +P S SSLT+ +++SS TL +M + L Sbjct: 289 ---GVGVTLAVTALFLITGLNGTAFYPSFSDLS----SSLTIKNASSSHYTLGVMSYVSL 341 Query: 345 IFLPIVLLYTLWSYYKMWGRMTTETLRRNENELY 378 + +P+VL Y + + + T+ +N++ Y Sbjct: 342 L-VPVVLAYIFIVWRAIDSKKITQDEIKNDHHAY 374 >UniRef50_B3QK51 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Rhodopseudomonas palustris RepID=B3QK51_RHOPT Length = 341 Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 92/200 (46%), Gaps = 15/200 (7%) Query: 17 VILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWP 76 +++ ++++ DG D+G+G L P R+ D R ++ ++ W+GN+ WL+L G L AA+P Sbjct: 19 IVVGLYVVLDGVDLGVGILFPFAPRSSD-RDAMMTTLEPFWDGNETWLVLGGMVLLAAFP 77 Query: 77 RVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADAR--WRKMWDAGLVIGSLVPPVVF 134 +A FYV + L+L L R +AF++R + W + AG I + VV Sbjct: 78 LAFAILLPAFYVPLCLMLFGLVIRGIAFEFRSQRGSFEIVWSMTFAAGSFIAAFCEGVVL 137 Query: 135 GIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVG 194 G G + AF G + L F + GL + L G WL KT G Sbjct: 138 GAFVGQSITVSNGAFA--------GGPFDWLGLFSIATGLGVVAAYGLLGACWLVWKTGG 189 Query: 195 VIHLRSQLATKRAALLVMLC 214 +Q + L +LC Sbjct: 190 ----STQNFGRELMLPTLLC 205 >UniRef50_D2B5X6 Cytochrome bd-type quinol oxidase subunit 2-like protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B5X6_STRRD Length = 249 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 58/108 (53%) Query: 20 VVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVY 79 V + + G D+G+G LLP + R+DDER V+ S+ + GN+VWLI + G L A+P + Sbjct: 11 VGYFVLAGADLGVGALLPYLGRSDDERGRVLASITPFFLGNEVWLIASAGILVGAFPVLE 70 Query: 80 AAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGS 127 SG YV +++L R RG++ A WR D + GS Sbjct: 71 GELLSGMYVPFVMLLLGWVVRDAGIWLRGRVDRAGWRGGCDGAVAAGS 118 >UniRef50_A9CZ56 Cytochrome bd ubiquinol oxidase, subunit II n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9CZ56_9RHIZ Length = 251 Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 48/142 (33%), Positives = 85/142 (59%), Gaps = 5/142 (3%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 E L +I+ L+G+ ++V++I DGFD+GIG L PL +D ++ +++++G W+ N+ WL Sbjct: 8 EWLPYIFAALMGIAILVYVILDGFDLGIGILSPLA--DDTQKDRMVSAIGPFWDANETWL 65 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIA-DARWRKMWDAGL 123 +LA G L A+P + + Y + ++L L R +AF++R K++ DA + W+ Sbjct: 66 VLAVGLLLVAFPVAHGVILTTLYFPVAVLLIGLILRGVAFEFRAKVSLDA--KPSWNRMF 123 Query: 124 VIGSLVPPVVFGIAFGNLLLGV 145 IGSL+ + G G +LG+ Sbjct: 124 FIGSLMSALAQGYMLGLYVLGL 145 >UniRef50_C4DV22 Cytochrome d oxidase cyd, subunit II n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DV22_9ACTO Length = 317 Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 95/197 (48%), Gaps = 18/197 (9%) Query: 10 IWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGG 69 ++++L+G + + G+D G+G LL L R D ERR+++ ++G + GN+VWL+ G Sbjct: 4 LFYVLLGAVFAGYFALAGYDYGVGVLLRLCGRTDTERRLILGALGPFFLGNEVWLVAGLG 63 Query: 70 ALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLV 129 L AA+P A +G Y A+ ++ ++ A R + A R +WD +V + + Sbjct: 64 LLLAAFPLAEGALLTGLYPALFPLIAAIVLFTAAVQIRSRATFA--RPLWDLLIVGSAAL 121 Query: 130 PPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQ 189 +G +FG +L G+P F P P++ G L+ + + G L Sbjct: 122 ISFGWGASFGLVLQGMPVRF----------------GPLPIITGALTTALFTMHGASLLA 165 Query: 190 LKTVGVIHLRSQLATKR 206 ++T I R+ L R Sbjct: 166 VRTPDPIRGRAALIGSR 182 >UniRef50_A6G8S6 Cytochrome bd ubiquinol oxidase, subunit II n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G8S6_9DELT Length = 344 Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/210 (27%), Positives = 98/210 (46%), Gaps = 14/210 (6%) Query: 10 IWWLLIGVILVVFMISDGFDMGIGC--LLPLVARNDDERRIVINSVGAHWEGNQVWLILA 67 ++WL IGV ++ + ++ G D G G LL R + +R ++ ++ WE N +W+I Sbjct: 6 VYWL-IGVAVIAYAVTAGADFGGGLWDLLATGPRRERQRELIAEAIAPIWEVNHIWMIFV 64 Query: 68 GGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYR--GKIADARWRKMWDAGLVI 125 LF+ +P +A +V ++LVL + R AF +R G D R R W I Sbjct: 65 VVMLFSVFPHAFAVVSIALHVPILLVLVGIVLRGSAFIFRAYGMEPDER-RAQWGRVFAI 123 Query: 126 GSLVPPVVFG-----IAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 S P+ G ++ G++L+ + A PQ+R G F +PF L GL +L + Sbjct: 124 TSAATPIALGAILAALSSGDILVELDAAGAPQVRS---GFFVGWTSPFALAVGLFTLALF 180 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALL 210 + +L + L + +R A++ Sbjct: 181 TMLAATYLAREAQVRGELELSIDFRRRAVI 210 >UniRef50_A7MEL0 Putative uncharacterized protein n=2 Tax=Cronobacter RepID=A7MEL0_ENTS8 Length = 340 Score = 67.8 bits (164), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 86/364 (23%), Positives = 159/364 (43%), Gaps = 51/364 (14%) Query: 19 LVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRV 78 ++++++ DG D+G+G L P ++ R+ + S+ W+GN+ WL+L GAL A +P Sbjct: 23 VLIYVLLDGADLGVGLLAPF--QSPQARQQMNISLLPVWDGNETWLVLTAGALLAMFPVA 80 Query: 79 YAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAF 138 ++ +S Y+ + ++L ++ R +A +YR +++DA + GS + + G Sbjct: 81 FSILYSALYLPVYIMLLAMIVRGVAIEYRHLRP-----RLFDALFIAGSWLTSLSQGATM 135 Query: 139 GNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGL-LSLGMVILQGGVWLQLKTVGVIH 197 G + G+ + G L+PF + C + LS+G +L G WL + G ++ Sbjct: 136 GAWVEGITHN-----GATFTGGPMDWLSPFSVFCAMALSVGYALL-GACWLIWRCEGELN 189 Query: 198 LRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQ--DANGPSNPLMKLVAVLPGAWM 255 ++ ALL W + + L Q +GP LVAV Sbjct: 190 AWARRQAMWLALLTAALLAGLLVWTVQLNETYRLHLQLWRWSGP------LVAV------ 237 Query: 256 NNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG-ITLFPFVM 314 LL F +LT+ R R + L +L+ F F + +FPF++ Sbjct: 238 ------------GLLAFLGVILTL----RQRRDFLPLAMTLLLFITAFGGMLLAVFPFIL 281 Query: 315 PSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLRRNE 374 P +L L + + T +ML+ +F+PI L+Y W ++ G++ Sbjct: 282 P------PNLLLIQAAAPPATQKLMLIAFGVFVPITLIYNSWGFWVFRGKIHAAREEERH 335 Query: 375 NELY 378 + + Sbjct: 336 SRRH 339 >UniRef50_A6LFA4 Cytochrome D ubiquinol oxidase subunit II n=13 Tax=Bacteria RepID=A6LFA4_PARD8 Length = 383 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 73/149 (48%), Gaps = 1/149 (0%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 Y L+ WW L+ ++ + + F G LL + + + ++++++NS G WE Sbjct: 5 YILLQHYWWFLVSLLGALLVFLL-FVQGGQSLLFTIGKTEIQQKMLLNSTGRKWEFTFTT 63 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L+ GGA FA++P Y+ +F G Y +L+L + ++++Y+ K + +K + L Sbjct: 64 LVTFGGAFFASFPLFYSTSFGGAYWVWMLILLCFVIQAVSYEYQAKKGNLLGKKTYQVFL 123 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQ 152 +I + P++ G A G F + Sbjct: 124 MINGIAGPILLGTAVATFFNGAEFIVNKE 152 >UniRef50_D1A755 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A755_THECD Length = 248 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 68/131 (51%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 + IW L+ + + +GFD+G+G LLP++ R +R ++I ++ N+VWL+ Sbjct: 1 MELIWLGLLVALPAGYFALEGFDLGVGMLLPVLGRTRRDRDLMIAAIAPFVLANEVWLVA 60 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 A G L A+P + G Y ++++L + R +R ++ WR +WDA + Sbjct: 61 AAGVLIGAFPLLEGKVLFGLYPLVVVMLLAWVLRDAGLWFRRRLDGDAWRTLWDAVIAAA 120 Query: 127 SLVPPVVFGIA 137 SL + +G+A Sbjct: 121 SLTLSLCWGMA 131 >UniRef50_A3ZTP2 Putative cytochrome d ubiquinol oxidase subunit II n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZTP2_9PLAN Length = 341 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 3/135 (2%) Query: 13 LLIGVILVVFMISDGFDMGIGC--LLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGA 70 +++G ++++ G D G G + N+ ER+++ +++G WE N +WLI Sbjct: 11 IVLGAATTLYLLFGGADFGAGIWEINTAFQSNEKERKLLYHAIGPVWEANHIWLIFVLVV 70 Query: 71 LFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRG-KIADARWRKMWDAGLVIGSLV 129 LFAA+P + A S F + LVL + FR + +R I R ++ W S Sbjct: 71 LFAAFPLAFQALCSAFIIPAFLVLVGIVFRGAGYVFRAYSIDSGRQQQFWRTLFAGASAA 130 Query: 130 PPVVFGIAFGNLLLG 144 P G G L G Sbjct: 131 APFFLGAIAGTLASG 145 >UniRef50_Q47RW4 Putative cytochrome D ubiquinol oxidase subunit II n=1 Tax=Thermobifida fusca YX RepID=Q47RW4_THEFY Length = 304 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 63/123 (51%) Query: 22 FMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAA 81 + + G D+G+G LLP AR+ ERR +I + ++ G++VWL+ G + P AA Sbjct: 16 YFVFAGSDIGLGMLLPYAARSPAERRRLIAVIAPYFLGSEVWLVATIGVVAGLVPVWEAA 75 Query: 82 AFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNL 141 + + +L+L + R RG++ ARWR +WD + GS + V +G L Sbjct: 76 VVTAQWPVFVLLLAAWLGRDAGLWLRGRLPAARWRAVWDGAVAAGSWLLAVAWGFVVAAL 135 Query: 142 LLG 144 L G Sbjct: 136 LGG 138 >UniRef50_D1CB62 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CB62_THET1 Length = 337 Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 8/183 (4%) Query: 14 LIGVI-LVVFMISDGFDMGIGC--LLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGA 70 LIGV+ L+ + + G D G G LL + ++R+ + N++G WE N VWLI Sbjct: 10 LIGVLALMAYAVLAGADFGAGVWDLLAWGPKAKEQRKTISNAIGPVWEANHVWLIFIIVL 69 Query: 71 LFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIAD-ARWRKMWDAGLVIGSLV 129 LF +PR ++A +V L L + R +F +R + +R+ W + SL Sbjct: 70 LFTCYPRAFSALSISLFVPFHLALLGIVLRGASFVFRAYAPERSRFASFWGSVFGSASLF 129 Query: 130 PPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQ 189 P V G+ G + G ++ + S W +P ++ GL++L V+L Sbjct: 130 TPFVLGMCMGAISAGSIRQMGSKVTSDV--SVWT--SPVSIVMGLMALFEAAYLAAVYLT 185 Query: 190 LKT 192 L++ Sbjct: 186 LES 188 >UniRef50_D2BDC9 Cytochrome d ubiquinol oxidase subunit II n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BDC9_STRRD Length = 255 Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 65/132 (49%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 + +W ++ ++L+ + +G +G G LLP + R +R V+ ++ N+VWL+ Sbjct: 1 MDILWTGVLALLLIGYFALEGSGIGAGMLLPALGRTQPDRDRVVAAMAPFVLANEVWLVA 60 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 G LF A+P + SG Y ++ +L S R +R ++ WR WD + +G Sbjct: 61 VAGVLFGAFPSIEGEVLSGLYPLVVTLLVSWILRDAGLWFRRRLDGHAWRAGWDWMICLG 120 Query: 127 SLVPPVVFGIAF 138 S + +G+A Sbjct: 121 SYGLALSWGMAL 132 >UniRef50_D2AUB4 Terminal oxidase subunit II n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2AUB4_STRRD Length = 337 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 8/176 (4%) Query: 15 IGVILVVFMISDGFDMGIGCLLPLVARND-DERRIVINSVGAHWEGNQVWLILAGGALFA 73 +GV L + F G+ L+ +R +RR++ +S+G WE N VWLI L+ Sbjct: 13 VGVTLYALLAGADFGGGVWDLVAGRSRAGMPQRRLIEHSIGPVWEANHVWLIFVIVVLWT 72 Query: 74 AWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVV 133 +P V+AA S Y+ + L + R AF +R + ++++ A S++ P Sbjct: 73 GFPPVFAAVMSTLYIPLTLAALGIIARGAAFVFRKASTELWQQRLFGAAFATSSVLTPFF 132 Query: 134 FGIAFGNLLLG-VPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWL 188 G G + G VP P L L + W L P LL G+L++G+ V+L Sbjct: 133 LGAVAGGIASGRVP----PGLAAGDLVTSW--LNPTSLLGGVLAVGVCAYLAAVYL 182 >UniRef50_C1YQX5 Cytochrome bd-type quinol oxidase, subunit 2 n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YQX5_NOCDA Length = 307 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 2/132 (1%) Query: 22 FMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAA 81 +++ G D+G+G L+P +AR ++RR V+ ++ ++ ++VWL+ A G L +P + Sbjct: 16 YLVLAGADIGLGMLMPRLARGPEQRRRVVAAIAPYFLASEVWLVAAVGVLAGLFPALEHH 75 Query: 82 AFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNL 141 A + + + ++L R R ++ RWR + D LV GS +G+ L Sbjct: 76 AVAELWPVLAVLLAGWLVRDAGLWLRARVDGERWRLVCDCALVGGSWALAAAWGLVVAGL 135 Query: 142 LLG--VPFAFTP 151 L G AFTP Sbjct: 136 LAGGLTASAFTP 147 >UniRef50_C6VWT6 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VWT6_DYAFD Length = 341 Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/190 (22%), Positives = 88/190 (46%), Gaps = 7/190 (3%) Query: 19 LVVFMISDGFDMGIGCLLPLVARNDDE--RRIVINSVGAHWEGNQVWLILAGGALFAAWP 76 ++++++ G D G G + ++ + + R+ + +++G WE N +WLI+A LF +P Sbjct: 13 ILLYLLLGGADFGAGIIELFTSQKNKQVTRKTLYSAIGPIWEANHMWLIIAIVILFVGFP 72 Query: 77 RVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADA-RWRKMWDAGLVIGSLVPPVVFG 135 +Y+ ++ + ++L + R AF +R A + +++ + S + P+ G Sbjct: 73 VIYSTMSVNLHIPLTVMLIGIIARGTAFTFRHYDAVVDDMQHLYNTIFAVSSFITPLFLG 132 Query: 136 IAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGV 195 I G+ + G P R + L F + GL ++ + V+L +T V Sbjct: 133 IIAGSAVSG---HIDPSARSFADAYIFSWLHWFAITVGLFTVSICGFLASVYLIGET-KV 188 Query: 196 IHLRSQLATK 205 H R + A K Sbjct: 189 EHERLRFAHK 198 >UniRef50_C0AEE2 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0AEE2_9BACT Length = 344 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 2/95 (2%) Query: 15 IGVILVVFMISDGFDMGIGCL--LPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALF 72 IG L+++++ G D G G L LP R + ++ ++ ++G WE N +WLIL LF Sbjct: 9 IGASLLLYVLLGGSDYGAGILELLPAGGRREAQKHVINEAMGPVWEANHIWLILVIVVLF 68 Query: 73 AAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYR 107 +P ++ ++ M+ +L + R AF +R Sbjct: 69 VGFPTIFTTLMVALHIPMLALLVGIVVRGTAFTFR 103 >UniRef50_A9AX76 Cytochrome bd ubiquinol oxidase subunit II n=2 Tax=Bacteria RepID=A9AX76_HERA2 Length = 336 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 12/147 (8%) Query: 14 LIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFA 73 L+GVI + F GI LL R +R + ++VG WE N VWLI LF Sbjct: 12 LLGVITYAILAGADFGGGIWDLLAWGPRRTQQREAIAHAVGPVWEANHVWLIFIIVVLFT 71 Query: 74 AWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRG-----KIADARWRKMWDAGLVIGSL 128 +P +AA G + L L + R AF +R + ++ + W S+ Sbjct: 72 GFPTAFAALSIGLFAPFHLALLGIILRGAAFVFRAYSPQKEQQPSQSSQRWGTIFGAASV 131 Query: 129 VPPVVFGIAFGNLLLGVPFAFTPQLRV 155 + PV+ G+ + G QLRV Sbjct: 132 ITPVILGMTLSAVSAG-------QLRV 151 >UniRef50_C6XT47 Cytochrome bd ubiquinol oxidase subunit II n=7 Tax=Bacteroidetes RepID=C6XT47_PEDHD Length = 339 Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 66/136 (48%), Gaps = 8/136 (5%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDD--ERRIVINSVGAHWEGNQ 61 Y + F+W ++++++ G D G G + + A+ + R+ + ++G WE N Sbjct: 3 YVVIVFLW-----TAILLYILLGGADFGAGIIELMTAKTNKAKTRKTMYKAIGPIWEANH 57 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIA-DARWRKMWD 120 +WLI+A LF +P++Y ++ ++ +L + R AF +R A +K++ Sbjct: 58 MWLIIAIVILFVGFPKIYTTISVYLHIPLVCMLLGIIARGTAFVFRNYDAVKDDMQKIYT 117 Query: 121 AGLVIGSLVPPVVFGI 136 V SL+ P GI Sbjct: 118 PIFVYSSLITPFFLGI 133 >UniRef50_A8V4U0 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V4U0_9AQUI Length = 98 Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 + TL IW+LL G+ L+ + ++DGFD+G G +L + A++++ R +N+VG W+G + Sbjct: 6 FTTLNGIWFLLAGIFLIGYSLTDGFDLGSG-ILHIFAKDENTRITYMNAVGPVWDGMKSG 64 Query: 64 LILAGGALFAAWPRVYAAAFSGFYV 88 L+L A F + F FY+ Sbjct: 65 LLLEEYA-FRSLSCCVCCIFQCFYL 88 >UniRef50_Q2KVX4 Putative cytochrome oxidase D ubiquinol oxidase,subunit II n=5 Tax=Bordetella RepID=Q2KVX4_BORA1 Length = 348 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 75/353 (21%), Positives = 149/353 (42%), Gaps = 49/353 (13%) Query: 17 VILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWP 76 +++ ++ DGFD+G+G LL + +ER +++ + + N+ W +L G +A+P Sbjct: 30 LLIAAGIVLDGFDIGVGILLQVA--PAEERGRMMSLLSPWRDANEFWPLLGIGLFGSAFP 87 Query: 77 RVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGI 136 + A Y + L++ + R ++F++R + A + W G GSL+ + G+ Sbjct: 88 FAWGAIMGKLYGPLTLMVLGIVLRSVSFEFRIR-ASTEVKPRWIFGFWAGSLLAAIGQGM 146 Query: 137 AFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVI 196 G + A Q Y W F L GL ++ L G WL ++ G + Sbjct: 147 VLGRI------ATDYQSDAGY---GW-----FSLFVGLCAVAAYALLGACWLAMRVDGEL 192 Query: 197 HLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMN 256 R+ + W G+ + AN A + W N Sbjct: 193 QRRAASWARHGI-----------RWTAAGMVAIAVTLGLAN----------AGIFYKWSN 231 Query: 257 --NFVESPVLWIFPLLGFFCP--LLTVMAIYRGRPGW-GFLMASLMQFGVIFTAGITLFP 311 + + +W+ LLGF LL + R W F++ L+ ++ + FP Sbjct: 232 AAHLGAAAGVWVAMLLGFVAAEMLLARLPGKADRLAWLPFVLCVLLYLLMLAGLAYSFFP 291 Query: 312 FVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 +++ + +T+WD + + + ++L V+I P+VL++ + +Y ++G+ Sbjct: 292 YLI------LDDMTIWDGSGALGSSRLVLAGVVIGGPVVLVFNILAYRSVFGK 338 >UniRef50_C6DYH0 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Geobacter RepID=C6DYH0_GEOSM Length = 349 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 47/197 (23%), Positives = 80/197 (40%), Gaps = 7/197 (3%) Query: 13 LLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALF 72 L+ G+++ F GI L R ++R + N++G WE N VWLI LF Sbjct: 12 LVAGLLMYALFGGADFGGGIWTALAFGPRAREQREALFNAIGPVWETNHVWLIFVIVTLF 71 Query: 73 AAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV-IGSLVPP 131 A+P + F ++L L + FR AF +R + + A + I S++ P Sbjct: 72 TAFPAGFGNLFIVLMTPLVLALVGINFRGAAFAFRHFGRELKKETPVSARVFEIASVLTP 131 Query: 132 VVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLK 191 G+A G ++ E F L F LL G++ + + +++ ++ Sbjct: 132 FTLGLAVSATAAGR-IVIAGRMPTE---QFSDWLNSFTLLGGVVGMAICAYLAPIYMTVR 187 Query: 192 TVGVIHLRSQLATKRAA 208 G LR + A Sbjct: 188 VTG--ELREDFRKESLA 202 >UniRef50_B9TGE2 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TGE2_RICCO Length = 325 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 8/119 (6%) Query: 87 YVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVP 146 Y + +L +L R +A +R + A AR + WDA ++ GS + G+ G+L+ G+ Sbjct: 2 YPVIFAMLFALILRGVAIGFRSE-ATARAKARWDAVMLTGSTMAAFCQGVLVGSLVQGIR 60 Query: 147 FAFTPQLRVEYLGSFWQLLTPFPLLCGL-LSLGMVILQGGVWLQLKTVGVIHLRSQLAT 204 A R Y G W L F L CG+ L+LG L G WL +T G + R++ A+ Sbjct: 61 TA-----RGTYQGGPWDWLGAFALFCGVALALGYAWL-GASWLIWRTEGSLQQRARRAS 113 >UniRef50_Q2JGE7 Cytochrome bd ubiquinol oxidase, subunit II n=3 Tax=Frankia RepID=Q2JGE7_FRASC Length = 330 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 2/105 (1%) Query: 17 VILVVFMISDGFDMGIGC--LLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAA 74 V L + + G D G G LL D+R+++ S+G WE N VWLI A+F+ Sbjct: 13 VGLTAYALLGGADFGGGVWDLLARGRHAGDQRKLISASLGPVWEANHVWLIFIVVAMFSG 72 Query: 75 WPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMW 119 +P Y S V + + L + R A+ YR A W Sbjct: 73 FPEAYGVIGSSLEVPLSVALVGIVLRGAAYVYRSYGAGGAGPDHW 117 >UniRef50_A0LZZ1 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Gramella forsetii KT0803 RepID=A0LZZ1_GRAFK Length = 341 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/215 (24%), Positives = 94/215 (43%), Gaps = 11/215 (5%) Query: 27 GFDMGIGCLLPLVARNDDE--RRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFS 84 G D G G + +R + + R V N +G WE N +WLI+ L+ A+P + Sbjct: 21 GADFGAGIVELFSSRENKKLNRDTVYNVIGPVWEANHIWLIILIVILWIAFPGYFNIIII 80 Query: 85 GFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMW-DAGLVIGSLVPPVVFGIAFGNLLL 143 ++ + LVL + R +AF +R A + W + I SL+ P+ G++FG L+ Sbjct: 81 YLHIPLTLVLLGITMRGVAFIFRHYDAVVDKSQDWYNHMFRISSLITPIFLGMSFGALIS 140 Query: 144 G---VPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRS 200 G V ++ E W L F L GL + L +T G I Sbjct: 141 GKIMVTNDYSETTFPEIFMDPW--LNIFTFLTGLFYASLCAFLASTLLIGETTGDIR--- 195 Query: 201 QLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQD 235 ++ ++++A+ ++ ++ G L G ++ +D Sbjct: 196 KMYSRKSAIFTVVLVVIGGTVLGYGYLTEMVFVED 230 >UniRef50_C7QJB4 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QJB4_CATAD Length = 338 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 9/162 (5%) Query: 28 FDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFY 87 F G+ LL D ERR++ +++G WE N VWLI A F+ +P + G Sbjct: 26 FGAGVWDLLARGRHADRERRLIAHALGPVWEANHVWLIFVIVATFSGFPTAFGIIARGLE 85 Query: 88 VAMILVLCSLFFRPLAFDYRGKIADARW-RKMWDAGLVIGSLVPPVVFGIAFGNLLLGVP 146 + + L L + R A+ YR A +W + S + P + G++ L G Sbjct: 86 LPLALALAGIVLRGAAYVYRAYGEGAAGPDSLWSRVFAVASSITPFMLGVSGAALATGKI 145 Query: 147 FAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWL 188 A + G +PF L+ G+ ++ + V+L Sbjct: 146 TATS--------GPLTPFDSPFTLVAGVFAVVVTAFLAAVYL 179 >UniRef50_A7H8Z5 Cytochrome bd ubiquinol oxidase subunit II n=6 Tax=Myxococcales RepID=A7H8Z5_ANADF Length = 351 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 88/197 (44%), Gaps = 7/197 (3%) Query: 28 FDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFY 87 F GI LL R +R +V ++G WE N VWLIL LF +P +AA + Sbjct: 26 FGGGIWDLLATGPRRKAQRDLVEQAIGPIWEANHVWLILVIVLLFTCFPSAFAAISIALF 85 Query: 88 VAMILVLCSLFFRPLAFDYRG-KIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVP 146 V ++L+L + R AF +R + + + W S++ PVV G+ G + G Sbjct: 86 VPLVLLLFGIVLRGAAFTFRTYDRPEDKVQVRWGLVFSSSSVLAPVVLGVVVGAIASGR- 144 Query: 147 FAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKR 206 A P+ V+ L W L+PFPL GL + + +L ++ G + + Sbjct: 145 LAGPPE-GVDPLA--W--LSPFPLSVGLFAAALFAFLAASYLAVEAKGELQEDFRRRAIG 199 Query: 207 AALLVMLCFLLAGYWLW 223 A +V +LAG W Sbjct: 200 AGGVVFGAAVLAGVLSW 216 >UniRef50_B5HKZ6 Cytochrome bd-I oxidase subunit II n=3 Tax=Streptomyces RepID=B5HKZ6_9ACTO Length = 346 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 4/139 (2%) Query: 9 FIWWLLIGVILVVFMISDGFDMGIG---CLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 FI W+L+ + + + + G D G G L R R ++ +++ WE N VWLI Sbjct: 4 FIAWVLV-LAIAAYACAGGTDYGAGFWDLLAGGAERGKRSRWLIDHAMAPVWEVNNVWLI 62 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 ++ +P ++ FS ++ + L L R F R ++++ A I Sbjct: 63 FILVIMWTGFPTLFQTVFSAMWLPLALAAVGLVLRGAGFALRKPTRRLAQQRIYGAVFAI 122 Query: 126 GSLVPPVVFGIAFGNLLLG 144 SL+ P FG G + G Sbjct: 123 SSLLTPFFFGAVLGGIASG 141 >UniRef50_A4FDV9 Cytochrome d ubiquinol oxidase subunit II n=4 Tax=Actinomycetales RepID=A4FDV9_SACEN Length = 340 Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 16/166 (9%) Query: 19 LVVFMISDGFDMGIGCLLPLVA----RNDDERRIVINSVGAHWEGNQVWLILAGGALFAA 74 L ++++ G D G G L L+A R +R ++ +S+G WE N VWLI + Sbjct: 15 LTLYVLFGGADFG-GGLWDLLAGGAERGRPQRELIEHSIGPVWEANHVWLIFVITLFWTV 73 Query: 75 WPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADA-RWRKMWDAGLVIGSLVPPVV 133 +P +A + Y+ + L + R AF +R K++D R R+++ A S+V P Sbjct: 74 FPAAFAPFAATLYIPLTLAALGIIARGAAFAFR-KVSDEFRQRRLFGAAFAFSSVVTPFF 132 Query: 134 FGIAFGNLLLG-VPFAFTPQLRV-EYLGSFWQLLTPFPLLCGLLSL 177 G G + G VP P L + L S+W P + G+L++ Sbjct: 133 LGTLLGAVASGRVP----PDLASGDVLTSWWN---PTSVTAGVLAV 171 >UniRef50_UPI0001C31BDC Cytochrome bd-type quinol oxidase subunit 2- like protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31BDC Length = 424 Score = 42.0 bits (97), Expect = 0.036, Method: Compositional matrix adjust. Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 5/134 (3%) Query: 14 LIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVIN---SVGAHWEGNQVWLILAGGA 70 L+G+IL V + G D G G R + RI + S+ WE N VWL+ Sbjct: 12 LVGLILYVVLA--GADFGAGFWQLAAGRGERGSRIREHAHASMAPVWEANHVWLVFILVI 69 Query: 71 LFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVP 130 + +P +A+ S + + + + FR A+ R + R ++ D + S++ Sbjct: 70 AWTCYPEAFASIASTLSIPLFIAAIGIVFRGAAYALRAGTSQRRELRVIDTVFAVSSILT 129 Query: 131 PVVFGIAFGNLLLG 144 P G G + G Sbjct: 130 PFALGTVIGAIASG 143 >UniRef50_D1NY02 Cyanide-insensitive oxidase CioB n=1 Tax=Providencia rustigianii DSM 4541 RepID=D1NY02_9ENTR Length = 156 Score = 41.6 bits (96), Expect = 0.047, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 7/102 (6%) Query: 268 PLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA-GITLFPFVMPSSVSPISSLTL 326 PLL C L + ++ R + +++L + FT GI+++P ++P +++ Sbjct: 57 PLLVIGCVWLIIKSVKRQQHDSIPFLSALALIFLGFTGLGISIWPNLIPPAIN------F 110 Query: 327 WDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTE 368 D+ +L MLV L +P++L+YT WSYY G++T E Sbjct: 111 RDAAGPPESLGFMLVGALFIIPVILVYTYWSYYVFRGKITPE 152 >UniRef50_B3SF07 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3SF07_TRIAD Length = 262 Score = 41.6 bits (96), Expect = 0.050, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 9/71 (12%) Query: 289 WGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLP 348 W F++ S + F+ GI+L+P+++ + +T+WDS + TL + +I+ I LP Sbjct: 173 WSFIVGSYL---ATFSQGISLWPYIV------VPDITIWDSAAPPETLKFVSIIICISLP 223 Query: 349 IVLLYTLWSYY 359 IV+ Y+++ YY Sbjct: 224 IVIGYSIFVYY 234 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ABK4 Cytochrome d ubiquinol oxidase subunit 2 n=387 T... 379 e-104 UniRef50_A4G4W0 Cytochrome d ubiquinol oxidase subunit 2 (Cytoch... 354 4e-96 UniRef50_A5F0M8 Cytochrome d ubiquinol oxidase, subunit II n=74 ... 346 1e-93 UniRef50_A6VVF5 Cytochrome d ubiquinol oxidase, subunit II n=22 ... 342 1e-92 UniRef50_B4SUI6 Cytochrome D ubiquinol oxidase, subunit II n=25 ... 336 6e-91 UniRef50_Q2J1M0 Cytochrome d ubiquinol oxidase, subunit II n=83 ... 327 5e-88 UniRef50_D1BDL9 Cytochrome d oxidase cyd, subunit II n=2 Tax=Act... 320 6e-86 UniRef50_Q609X1 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 319 1e-85 UniRef50_C5AXY0 Cytochrome d terminal oxidase, polypeptide subun... 309 9e-83 UniRef50_B3QXC1 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 307 3e-82 UniRef50_D1A2D3 Cytochrome d ubiquinol oxidase, subunit II n=34 ... 301 4e-80 UniRef50_A1AN69 Cytochrome d ubiquinol oxidase, subunit II n=30 ... 299 2e-79 UniRef50_B7GK13 Cytochrome bd-type quinol oxidase, subunit 2 n=2... 297 4e-79 UniRef50_A9KD50 Cytochrome d ubiquinol oxidase subunit II n=3 Ta... 297 5e-79 UniRef50_A0KIS6 Cytochrome D ubiquinol oxidase, subunit II n=2 T... 296 7e-79 UniRef50_A5FZ08 Cytochrome d ubiquinol oxidase, subunit II n=15 ... 292 2e-77 UniRef50_B0TEW5 Cytochrome bd ubiquinol oxidase, subunit ii n=1 ... 290 5e-77 UniRef50_D1U471 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 288 2e-76 UniRef50_A8VUL7 Aspartate kinase n=1 Tax=Bacillus selenitireduce... 286 7e-76 UniRef50_B2UM68 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 286 1e-75 UniRef50_A0PP39 Integral membrane cytochrome D ubiquinol oxidase... 285 2e-75 UniRef50_B0U137 Alkaline phosphatase n=18 Tax=Francisella RepID=... 282 1e-74 UniRef50_C0W2T5 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 282 2e-74 UniRef50_Q816N2 Cytochrome d ubiquinol oxidase subunit II n=73 T... 281 3e-74 UniRef50_A7HAW4 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 281 4e-74 UniRef50_P94365 Cytochrome d ubiquinol oxidase subunit 2 n=76 Ta... 278 3e-73 UniRef50_C2C3U7 Cytochrome bd ubiquinol oxidase subunit II n=2 T... 278 3e-73 UniRef50_A7ZAA3 CydB n=16 Tax=Bacillales RepID=A7ZAA3_BACA2 276 8e-73 UniRef50_D1R937 Putative uncharacterized protein n=1 Tax=Parachl... 276 9e-73 UniRef50_Q0BVW7 Cyanide-insensitive cytochrome bd-type quinol ox... 276 9e-73 UniRef50_C1DWD8 Cytochrome D ubiquinol oxidase, subunit II n=1 T... 274 4e-72 UniRef50_C9KPM5 Cytochrome D ubiquinol oxidase, subunit II n=1 T... 273 8e-72 UniRef50_O67371 Cytochrome oxidase d subunit II n=1 Tax=Aquifex ... 272 2e-71 UniRef50_A5CR84 Cytochrome bd-type menaquinol oxidase subunit II... 270 5e-71 UniRef50_C8WEN7 Cytochrome d ubiquinol oxidase, subunit II n=14 ... 269 9e-71 UniRef50_Q2IFY9 Cytochrome d ubiquinol oxidase, subunit II n=5 T... 268 2e-70 UniRef50_C7RCZ4 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 267 5e-70 UniRef50_B6WVU2 Putative uncharacterized protein n=1 Tax=Desulfo... 263 8e-69 UniRef50_D1BV47 Cytochrome d ubiquinol oxidase, subunit II n=7 T... 262 2e-68 UniRef50_Q6MAP6 Putative cytochrome bd-I oxidase subunit II n=1 ... 261 4e-68 UniRef50_Q6ABD4 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 260 5e-68 UniRef50_C7M6E4 Cytochrome d ubiquinol oxidase, subunit II n=7 T... 259 9e-68 UniRef50_A0LSG2 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 257 5e-67 UniRef50_B0VC09 Ubiquinol oxidase subunit II, cyanide insensitiv... 256 1e-66 UniRef50_A1R5L7 Cytochrome d ubiquinol oxidase, subunit II n=18 ... 254 3e-66 UniRef50_Q46G86 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 253 1e-65 UniRef50_Q5ZZ11 Cytochrome D ubiquinol oxidase subunit II, cyani... 252 2e-65 UniRef50_A8GFS1 Cytochrome d ubiquinol oxidase, subunit II n=19 ... 251 4e-65 UniRef50_Q4KA99 Cytochrome d ubiquinol oxidase, subunit II n=66 ... 250 4e-65 UniRef50_B4U7P7 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 250 8e-65 UniRef50_Q1J2Z7 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 249 2e-64 UniRef50_Q67RR5 Cytochrome D ubiquinol oxidase subunit II n=2 Ta... 249 2e-64 UniRef50_Q1ILJ8 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 248 2e-64 UniRef50_Q0YUS4 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 247 6e-64 UniRef50_C8WK01 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 246 8e-64 UniRef50_D1RLM4 Cytochrome D ubiquinol oxidase subunit II n=1 Ta... 246 9e-64 UniRef50_C7MDJ2 Cytochrome d oxidase cyd, subunit II n=1 Tax=Bra... 246 1e-63 UniRef50_Q255C4 Cytochrome D oxidase subunit II n=14 Tax=Chlamyd... 245 1e-63 UniRef50_B2SK06 Cytochrome D ubiquinol oxidase, subunit II n=5 T... 244 3e-63 UniRef50_C2KPN0 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 244 5e-63 UniRef50_B1MXQ3 Cytochrome d ubiquinol oxidase, subunit II n=30 ... 244 6e-63 UniRef50_B1VE35 Cytochrome d ubiquinol oxidase subunit 2 n=4 Tax... 244 6e-63 UniRef50_B4RAL0 Cytochrome oxidase, subunit II n=2 Tax=Proteobac... 243 9e-63 UniRef50_C2KAY6 Cytochrome d ubiquinol oxidase, subunit II n=5 T... 242 1e-62 UniRef50_B0UGT2 Cytochrome d ubiquinol oxidase, subunit II n=17 ... 240 6e-62 UniRef50_A2RMA6 Cytochrome d ubiquinol oxidase, subunit II n=5 T... 240 7e-62 UniRef50_A6W2X5 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 238 2e-61 UniRef50_D0XNI3 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 237 5e-61 UniRef50_C8XGP9 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 236 1e-60 UniRef50_A0LMS2 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 235 1e-60 UniRef50_Q040K6 Cytochrome bd-type quinol oxidase, subunit 2 n=5... 234 3e-60 UniRef50_A5FA89 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 233 7e-60 UniRef50_B6IQW9 Ubiquinol oxidase subunit II, cyanide insensitiv... 233 8e-60 UniRef50_C0R3J3 Cytochrome d ubiquinol oxidase, subunit II n=31 ... 231 4e-59 UniRef50_B8ESY7 Cytochrome d ubiquinol oxidase, subunit II n=4 T... 230 4e-59 UniRef50_Q4UWQ0 Cytochrome D oxidase subunit B n=3 Tax=Xanthomon... 230 5e-59 UniRef50_C7HZB4 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 230 6e-59 UniRef50_C2CTD2 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 228 3e-58 UniRef50_D2B3T8 Cytochrome oxidase subunit II n=1 Tax=Streptospo... 228 3e-58 UniRef50_D0WHD0 Cytochrome D ubiquinol oxidase, subunit II n=1 T... 227 4e-58 UniRef50_B2IDR4 Cytochrome d ubiquinol oxidase, subunit II n=19 ... 225 2e-57 UniRef50_A6C9B8 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 221 3e-56 UniRef50_C0XPN4 Cytochrome bd ubiquinol oxidase subunit II n=2 T... 221 3e-56 UniRef50_A4SZB4 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 221 3e-56 UniRef50_C7N0L6 Cytochrome d oxidase cyd, subunit II n=1 Tax=Sla... 218 3e-55 UniRef50_D2L7C6 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 217 5e-55 UniRef50_Q2JM63 Cytochrome d ubiquinol oxidase, subunit II n=30 ... 216 8e-55 UniRef50_Q2SP33 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 214 5e-54 UniRef50_A7MEL0 Putative uncharacterized protein n=2 Tax=Cronoba... 213 7e-54 UniRef50_Q1LCN4 Cytochrome d ubiquinol oxidase, subunit II n=69 ... 207 5e-52 UniRef50_C4XJ24 Putative cytochrome d ubiquinol oxidase subunit ... 207 5e-52 UniRef50_A9ASF7 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 205 1e-51 UniRef50_UPI0001C321E0 cytochrome d ubiquinol oxidase, subunit I... 202 2e-50 UniRef50_C5A672 Cytochrome bd ubiquinol oxidase, subunit II (Cyd... 199 1e-49 UniRef50_B2RJL6 Cytochrome d ubiquinol oxidase subunit II n=56 T... 196 1e-48 UniRef50_B2JUZ0 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 196 1e-48 UniRef50_D0L0A7 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 193 9e-48 UniRef50_A7I116 Cytochrome D ubiquinol oxidase, subunit II n=1 T... 193 1e-47 UniRef50_A0Q8B4 Cytochrome bd-II terminal oxidase subunit II n=1... 191 4e-47 UniRef50_A7ZG70 Cytochrome D ubiquinol oxidase, subunit II n=4 T... 190 7e-47 UniRef50_C9Q1E8 Cytochrome D ubiquinol oxidase subunit II n=7 Ta... 190 9e-47 UniRef50_D2S1W8 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 189 1e-46 UniRef50_A6W8I8 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 188 4e-46 UniRef50_D2B3F0 Cytochrome d ubiquinol oxidase subunit II n=1 Ta... 187 6e-46 UniRef50_B3QK51 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 187 6e-46 UniRef50_C0G2G6 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 186 1e-45 UniRef50_Q03D44 Cytochrome bd-type quinol oxidase, fusion of sub... 184 4e-45 UniRef50_B4RY64 Quinol oxidase, subunit II n=3 Tax=Gammaproteoba... 184 5e-45 UniRef50_B9Z1X7 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 183 8e-45 UniRef50_B9L7C1 Cytochrome bd oxidase subunit II n=2 Tax=Nautili... 182 2e-44 UniRef50_A6Q1A5 Cytochrome bd oxidase subunit II n=1 Tax=Nitrati... 179 2e-43 UniRef50_A6LFA4 Cytochrome D ubiquinol oxidase subunit II n=13 T... 176 1e-42 UniRef50_UPI000038268B COG1294: Cytochrome bd-type quinol oxidas... 175 3e-42 UniRef50_C6NVA4 Cytochrome d ubiquinol oxidase, subunit II n=4 T... 175 3e-42 UniRef50_C4DN93 Cytochrome d oxidase cyd, subunit II n=1 Tax=Sta... 173 1e-41 UniRef50_B9P917 Predicted protein n=7 Tax=cellular organisms Rep... 165 3e-39 UniRef50_C7NNR2 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 160 7e-38 UniRef50_A8V528 Beta and gamma crystallin:Cytochrome bd ubiquino... 160 1e-37 UniRef50_Q2KVX4 Putative cytochrome oxidase D ubiquinol oxidase,... 155 2e-36 UniRef50_B0R8N6 Cytochrome d ubiquinol oxidase subunit II n=2 Ta... 150 1e-34 UniRef50_C6DYH0 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 149 1e-34 UniRef50_C4DV22 Cytochrome d oxidase cyd, subunit II n=1 Tax=Sta... 149 2e-34 UniRef50_C6XT47 Cytochrome bd ubiquinol oxidase subunit II n=7 T... 142 2e-32 UniRef50_C6VWT6 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 139 1e-31 UniRef50_UPI0001B55F87 cytochrome bd-type menaquinol oxidase sub... 139 2e-31 UniRef50_D1CB62 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 138 3e-31 UniRef50_A0LZZ1 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 137 6e-31 UniRef50_C3DRT5 Cytochrome d ubiquinol oxidase subunit II n=2 Ta... 133 7e-30 UniRef50_A3ZTP2 Putative cytochrome d ubiquinol oxidase subunit ... 131 4e-29 UniRef50_A9CZ56 Cytochrome bd ubiquinol oxidase, subunit II n=1 ... 130 9e-29 UniRef50_A6G8S6 Cytochrome bd ubiquinol oxidase, subunit II n=1 ... 128 2e-28 UniRef50_D2AUB4 Terminal oxidase subunit II n=1 Tax=Streptospora... 125 4e-27 UniRef50_A8EQ33 Cytochrome D ubiquinol oxidase subunit II n=1 Ta... 123 7e-27 UniRef50_D1A755 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 123 9e-27 UniRef50_Q937L0 Cytochrome d terminal oxidase (Fragment) n=1 Tax... 123 1e-26 UniRef50_A9AX76 Cytochrome bd ubiquinol oxidase subunit II n=2 T... 123 1e-26 UniRef50_D2BDC9 Cytochrome d ubiquinol oxidase subunit II n=1 Ta... 122 2e-26 UniRef50_B9TGE2 Putative uncharacterized protein n=1 Tax=Ricinus... 121 5e-26 UniRef50_D2B5X6 Cytochrome bd-type quinol oxidase subunit 2-like... 119 2e-25 UniRef50_C0AEE2 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 118 2e-25 UniRef50_Q2JGE7 Cytochrome bd ubiquinol oxidase, subunit II n=3 ... 110 1e-22 UniRef50_C1YQX5 Cytochrome bd-type quinol oxidase, subunit 2 n=1... 105 2e-21 UniRef50_Q47RW4 Putative cytochrome D ubiquinol oxidase subunit ... 97 9e-19 UniRef50_A8V4U0 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 80 2e-13 UniRef50_B2SHW9 Cytochrome D ubiquinol oxidase subunit II n=2 Ta... 80 2e-13 Sequences not found previously or not previously below threshold: UniRef50_D1SIK0 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 126 1e-27 UniRef50_B5HKZ6 Cytochrome bd-I oxidase subunit II n=3 Tax=Strep... 125 4e-27 UniRef50_A7H8Z5 Cytochrome bd ubiquinol oxidase subunit II n=6 T... 120 7e-26 UniRef50_A4FDV9 Cytochrome d ubiquinol oxidase subunit II n=4 Ta... 106 1e-21 UniRef50_C7QJB4 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 106 2e-21 UniRef50_C1ZA12 Cytochrome bd-type quinol oxidase, subunit 2 n=1... 100 9e-20 UniRef50_UPI0001C31BDC Cytochrome bd-type quinol oxidase subunit... 95 3e-18 UniRef50_D1NY02 Cyanide-insensitive oxidase CioB n=1 Tax=Provide... 83 2e-14 UniRef50_B2JRW5 Cytochrome bd ubiquinol oxidase subunit I n=1 Ta... 66 3e-09 UniRef50_C9LLF6 CydB n=1 Tax=Dialister invisus DSM 15470 RepID=C... 61 8e-08 UniRef50_B3SF07 Putative uncharacterized protein n=1 Tax=Trichop... 60 1e-07 UniRef50_UPI000191363F hypothetical protein Salmonellaentericaen... 56 3e-06 UniRef50_Q88HL8 Ubiquinol oxidase subunit II-related protein n=1... 53 2e-05 UniRef50_C8Q5N5 Putative uncharacterized protein n=1 Tax=Pantoea... 45 0.003 UniRef50_B1HTX5 Cytochrome d ubiquinol oxidase subunit II n=2 Ta... 45 0.004 UniRef50_B6B0F2 Cytochrome bd ubiquinol oxidase, subunit II n=1 ... 43 0.018 UniRef50_Q5WII1 Cytochrome d ubiquinol oxidase subunit II CydB n... 43 0.023 UniRef50_A0RL15 Cytochrome d ubiquinol oxidase, subunit II n=81 ... 42 0.042 >UniRef50_P0ABK4 Cytochrome d ubiquinol oxidase subunit 2 n=387 Tax=Bacteria RepID=CYDB_ECO57 Length = 379 Score = 379 bits (974), Expect = e-104, Method: Composition-based stats. Identities = 218/379 (57%), Positives = 278/379 (73%), Gaps = 1/379 (0%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M DYE LRFIWWLL+GV+L+ F ++DGFDMG+G L + RND ERRI+INS+ HW+GN Sbjct: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 QVWLI AGGALFAAWP VYAAAFSGFYVAMILVL SLFFRP+ FDYR KI + RWR MWD Sbjct: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 G+ IGS VPP+V G+AFGNLL GVPF LR+ Y G+F+QLL PF LL G++S+GM+ Sbjct: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVL-LAQDANGP 239 I QG +LQ++TVG +HLR++ + AAL+ ++CF LAG W+ GIDG+V+ D Sbjct: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299 SNPL K V GAW+ NF +P+LW P LG PLLT++ + W F+ +SL Sbjct: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 Query: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359 +I TAGI +FPFVMPSS +SLT+WD+TSSQLTL++M + ++ +PI+LLYT W Y+ Sbjct: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 Query: 360 KMWGRMTTETLRRNENELY 378 KM+GR+T E + RN + LY Sbjct: 361 KMFGRITKEDIERNTHSLY 379 >UniRef50_A4G4W0 Cytochrome d ubiquinol oxidase subunit 2 (Cytochrome d ubiquinol oxidase subunit II) (Cytochrome bd-I oxidase subunit II) n=37 Tax=Bacteria RepID=A4G4W0_HERAR Length = 384 Score = 354 bits (908), Expect = 4e-96, Method: Composition-based stats. Identities = 179/379 (47%), Positives = 247/379 (65%), Gaps = 1/379 (0%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 + DY+ LR WW LIGV+L+ F ++DGFD+G G LLP VARND ERR+VINSVG WEGN Sbjct: 6 LIDYDILRLTWWALIGVLLLAFAVTDGFDLGTGILLPFVARNDIERRVVINSVGPVWEGN 65 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 QVWLIL GGA+FAAWP++YA AFSGFY+AM +L +L RP+AF +R K D WR WD Sbjct: 66 QVWLILGGGAIFAAWPQLYAVAFSGFYLAMFAILVALILRPVAFKFRSKREDPGWRARWD 125 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 L VP ++FG+A GN+L GVPF + + Y GSF+ LL PF LLCGL+S+ M+ Sbjct: 126 GVLFFSGFVPSLIFGVALGNVLQGVPFRLDLDMHIFYEGSFFGLLNPFALLCGLVSVAML 185 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQ-DANGP 239 + G WLQLKT GV+ R++ AAL +L + AG LW +DG+ + + D GP Sbjct: 186 AMHGSAWLQLKTDGVVAERARRYGSMAALATVLLYGCAGLLLWKYVDGYRISSMIDPVGP 245 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299 SNPL+K V GAW N+ P P+LG + + + R + L +++ Sbjct: 246 SNPLLKTVEGHAGAWFVNYTAQPWTMAAPVLGLLGAIGAWLGLRMRREIFTLLCSAVSIS 305 Query: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359 G++ + G ++FPF++PSS+ P +SLT+WDS+SS LTL IMLV+ +IF+PI++ YT W Y+ Sbjct: 306 GIVLSVGASMFPFILPSSIHPAASLTVWDSSSSHLTLFIMLVVSVIFIPIIVAYTTWVYH 365 Query: 360 KMWGRMTTETLRRNENELY 378 +WG++ + +R Y Sbjct: 366 VLWGKVDEKAIRDETGHAY 384 >UniRef50_A5F0M8 Cytochrome d ubiquinol oxidase, subunit II n=74 Tax=Gammaproteobacteria RepID=A5F0M8_VIBC3 Length = 378 Score = 346 bits (887), Expect = 1e-93, Method: Composition-based stats. Identities = 170/378 (44%), Positives = 249/378 (65%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 MF+Y+TLR IWW LIG +L+ FMI+DGFDMG+G LLP++ +++ ++R++INS+ HW+GN Sbjct: 1 MFEYDTLRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGN 60 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 QVWLI AGGALFAAWP VYA +FS Y+AM L+L +L+ RPLA +YR KI WRK+ D Sbjct: 61 QVWLITAGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICD 120 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 + + L+PP++FG+AFGNL+ G+PF+ L V+Y GSF L+TPF +L G + + M Sbjct: 121 ISISLSGLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMA 180 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 ++QG WL LKT ++H +++L + + L + F++ G+ + ++ + D N S Sbjct: 181 LVQGSAWLTLKTSDILHKKARLTAQISVLCLFGLFIIGGFMVHGMNGYLIVSSLDYNAIS 240 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 NPL K+V GAW+ NF P +W P+ G + ++ F+ AS+ Sbjct: 241 NPLNKVVFQQAGAWLTNFERYPWMWFAPMGGLMMAMGVFLSAKWKNDAITFVCASVTNAC 300 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 +I TAG +FPF+MPSS P SLTLWD+TSS+ TL+IM + + LPI+L YT +SY Sbjct: 301 IILTAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSYRT 360 Query: 361 MWGRMTTETLRRNENELY 378 M+GR+ + + RN + LY Sbjct: 361 MFGRLDKQYIERNHHSLY 378 >UniRef50_A6VVF5 Cytochrome d ubiquinol oxidase, subunit II n=22 Tax=Proteobacteria RepID=A6VVF5_MARMS Length = 378 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 197/378 (52%), Positives = 262/378 (69%), Gaps = 1/378 (0%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 DYE L+ IWW+LIGV+L+ F ++DGFDMG+G LL ++ ND ERR++INS+ HW+GNQ Sbjct: 1 MDYELLKVIWWVLIGVLLIGFSVTDGFDMGVGSLLKIIGGNDSERRVMINSIAPHWDGNQ 60 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VW I AGGALFAAWP VYA +FSGFY AM+LVL +LFFRP+ FDYR K+ + +WR WD Sbjct: 61 VWFITAGGALFAAWPVVYATSFSGFYFAMMLVLAALFFRPIGFDYRSKLENTKWRNGWDW 120 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 G+ GS VPP++FG+AFGNLL GVPF F LRV Y GSF+ LL PF +LCGL+SL M++ Sbjct: 121 GITFGSAVPPIIFGVAFGNLLQGVPFEFDQYLRVTYTGSFFALLNPFAILCGLVSLLMLM 180 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQ-DANGPS 240 QGG WLQ+KT + ++ T L + F++AG WL GIDG+VL + D N Sbjct: 181 TQGGAWLQMKTDDALLEKASRITAITGALAAVLFIIAGVWLAYGIDGYVLTSSIDGNKVM 240 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 PLMK V PGAW+ N+ + P L + P++G L + + FL +SL G Sbjct: 241 TPLMKTAEVQPGAWLANYDKVPALMLAPIIGIAGMLFAAITAVMRKGALSFLSSSLGIAG 300 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 +I TAG ++FPF+MPSS P SLT+WD+TSS+ T+ IM V+ IF+PIVL+YTLW+Y+ Sbjct: 301 IIVTAGGSMFPFLMPSSSYPSMSLTMWDATSSENTMMIMFVVACIFVPIVLIYTLWNYFV 360 Query: 361 MWGRMTTETLRRNENELY 378 M+GR+T + + N + LY Sbjct: 361 MYGRLTKKHIEENNHSLY 378 >UniRef50_B4SUI6 Cytochrome D ubiquinol oxidase, subunit II n=25 Tax=Salmonella enterica subsp. enterica RepID=B4SUI6_SALNS Length = 378 Score = 336 bits (863), Expect = 6e-91, Method: Composition-based stats. Identities = 304/378 (80%), Positives = 338/378 (89%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M DYETLRFIWWLLIGVILV FM++DGFDMG+GCLLPL+ARNDDERR++INSVGAHWEGN Sbjct: 1 MLDYETLRFIWWLLIGVILVAFMVTDGFDMGVGCLLPLIARNDDERRVLINSVGAHWEGN 60 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLC+LFFRPLAFDYRGKIA+ARWR +WD Sbjct: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCALFFRPLAFDYRGKIANARWRALWD 120 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 GLVIGSLVPPVVFGIAFGNL LGVPFAFTPQL V+Y G+FWQLL+PF LLCGLLSL +V Sbjct: 121 TGLVIGSLVPPVVFGIAFGNLFLGVPFAFTPQLHVDYFGTFWQLLSPFALLCGLLSLSLV 180 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 I+QGGVWLQLKT GVI R+ AT+ +ALL+++CFLLAGYWLW G+DGFVLL QDANGPS Sbjct: 181 IMQGGVWLQLKTEGVIRQRALSATRHSALLIVICFLLAGYWLWAGVDGFVLLTQDANGPS 240 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 NPL+K VA+LPGAWMN+F+ SP+L I PLLG P+L A RG+ GFL ASL Q Sbjct: 241 NPLLKGVAILPGAWMNHFIRSPLLLIIPLLGMILPILAFYACLRGQTIRGFLFASLTQAC 300 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 VIFTAGITLFPFVMPSSVSP+SSLT+WDSTSSQ+TL IMLVIVLIFLPIVLLYTLWSYYK Sbjct: 301 VIFTAGITLFPFVMPSSVSPLSSLTVWDSTSSQMTLEIMLVIVLIFLPIVLLYTLWSYYK 360 Query: 361 MWGRMTTETLRRNENELY 378 M GR+ ETLRRN++ELY Sbjct: 361 MLGRINLETLRRNDHELY 378 >UniRef50_Q2J1M0 Cytochrome d ubiquinol oxidase, subunit II n=83 Tax=Bacteria RepID=Q2J1M0_RHOP2 Length = 383 Score = 327 bits (838), Expect = 5e-88, Method: Composition-based stats. Identities = 201/383 (52%), Positives = 265/383 (69%), Gaps = 5/383 (1%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M DYETL+F+WW+ +G++L+ F I+DG DMG+G LLP VAR D ERRI INSVG HW+GN Sbjct: 1 MLDYETLKFVWWIFVGLLLMGFAITDGMDMGVGTLLPFVARKDVERRIAINSVGPHWDGN 60 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 QVW I AGGA+FAAWP VYAAAFSGFY+AM+LVL +LFFRP+ FDYR KI + WR WD Sbjct: 61 QVWFITAGGAIFAAWPAVYAAAFSGFYMAMLLVLFALFFRPVGFDYRSKIENPTWRNAWD 120 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGS----FWQLLTPFPLLCGLLS 176 GL G +P ++FG+AFGNLL GVPF LR Y GS LL PF LL G++S Sbjct: 121 WGLFAGGAIPALIFGVAFGNLLQGVPFRLDELLRSHYQGSLLTALLPLLNPFALLAGVIS 180 Query: 177 LGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDA 236 L M+ GGVWLQL+ G + R++ A + +V + F LAG WLW+G+DG+ ++ + A Sbjct: 181 LAMLAAHGGVWLQLRASGAVADRARKAVLLLSPIVAVAFALAGVWLWLGVDGYRIVKEAA 240 Query: 237 N-GPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMAS 295 + SNPL K V PGAW++ + + P+ I P LG PLLT++ RPG F+ ++ Sbjct: 241 HSAASNPLAKEVVRAPGAWLDIYAKQPLAMIVPALGLVGPLLTMLLAAVHRPGLAFVTSA 300 Query: 296 LMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTL 355 G+I TAG+++FPF+MPSS+ P SSLT+WD+ SS+LTL++M V+IFLPIVL YT+ Sbjct: 301 FGMIGIIGTAGLSMFPFIMPSSIDPRSSLTIWDAASSELTLTVMFWAVVIFLPIVLGYTV 360 Query: 356 WSYYKMWGRMTTETLRRNENELY 378 W Y MWGR+T + + + Y Sbjct: 361 WCYANMWGRVTADEIEARAHSAY 383 >UniRef50_D1BDL9 Cytochrome d oxidase cyd, subunit II n=2 Tax=Actinomycetales RepID=D1BDL9_SANKS Length = 368 Score = 320 bits (820), Expect = 6e-86, Method: Composition-based stats. Identities = 120/371 (32%), Positives = 204/371 (54%), Gaps = 37/371 (9%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 D ETL+ +W++LI V+ +++ +GFD G+G L+P++ R + +RR++IN++G W+GN+ Sbjct: 1 MDLETLQVLWFVLIAVLWTGYLVLEGFDFGVGMLMPILGRKEKDRRVMINTIGPVWDGNE 60 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWL+ AGGA FAA+P YA+ FSGFY+ + ++L L R + F+YR KI DA WR+ WDA Sbjct: 61 VWLLTAGGATFAAFPEWYASLFSGFYIPLFIILICLIVRGMGFEYRSKINDATWRRRWDA 120 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 ++IGS +P +++G+AF NL+ GV + G F+ LL+PF LL G++++ + + Sbjct: 121 SVIIGSWLPSILWGVAFANLVRGVEMDANHTM----TGGFFSLLSPFALLGGVVTMLLFL 176 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 G V++ LKT G I +R++ + A + + + AG W Sbjct: 177 THGAVFVALKTEGDIRVRAR---RLAGMFSVASVVAAGGW-------------------- 213 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 W + W + + V++ R R GW F ++L Sbjct: 214 ----------ALWAQLAYGTTWTWGAVAVAAAALVAVVVSNARAREGWAFFWSALAILAA 263 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 + +++P VMP+S P +SL + +++S++ TL++M + L P+VLLY W+Y+ Sbjct: 264 VVLIFGSMYPDVMPASNDPANSLNIRNASSTEYTLTVMTWVALFLTPLVLLYQSWTYWVF 323 Query: 362 WGRMTTETLRR 372 R+ T + Sbjct: 324 RKRIGTHHIPE 334 >UniRef50_Q609X1 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Methylococcus capsulatus RepID=Q609X1_METCA Length = 378 Score = 319 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 169/378 (44%), Positives = 235/378 (62%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 MFDYET+R IWW++ G + F+++ GFD GIG LLP + RND ERR+VIN++G W+GN Sbjct: 1 MFDYETMRVIWWVITGAVATGFVLTVGFDFGIGALLPFIGRNDVERRVVINTIGPTWDGN 60 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 QVWLIL GGA+FA WP VYA FSG Y+AM+LVL +LFFRP+ FDYR K+ +WR WD Sbjct: 61 QVWLILLGGAIFAVWPAVYATLFSGLYIAMLLVLYTLFFRPVGFDYRSKLESPQWRTAWD 120 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 GL IG VPPV+ G+ GNLL+G+PF LR Y GSFW LLTPFPLLCG++ L Sbjct: 121 WGLFIGGAVPPVLMGVLVGNLLVGLPFHLDGSLRTFYDGSFWGLLTPFPLLCGVIGLLAC 180 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 + G V+L +T I R++ ++++L +LA W+ +GI +L Sbjct: 181 VFHGAVYLGCRTERPIEQRARRVAAIGGVVLVLLMILAAAWVILGIPRPEILTMAGPNAP 240 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 + M G+W+ NF+ P L++ P L GR F +++ G Sbjct: 241 SNPMAKTVDFSGSWLGNFLAHPRLFVAPALAVLGVSAAAALAGSGRSAAAFAASAVGMGG 300 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 +++T G LFPF++ S+ P SSLT+WD+++S L L L I L+FLPIVLLYT W+Y Sbjct: 301 LLWTVGFGLFPFMLISTTDPRSSLTIWDASASHLNLQWSLAITLMFLPIVLLYTRWAYRV 360 Query: 361 MWGRMTTETLRRNENELY 378 +WG++T + + ++ LY Sbjct: 361 IWGKVTVADIAKGDHTLY 378 >UniRef50_C5AXY0 Cytochrome d terminal oxidase, polypeptide subunit II n=6 Tax=Alphaproteobacteria RepID=C5AXY0_METEA Length = 384 Score = 309 bits (792), Expect = 9e-83, Method: Composition-based stats. Identities = 179/380 (47%), Positives = 240/380 (63%), Gaps = 2/380 (0%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 + DYE+LR IWW+L+GV+L+ F ++DGFD+G+G LLP V R D ERR+ I++V A WEGN Sbjct: 5 LSDYESLRLIWWVLLGVLLIGFAVTDGFDLGVGALLPFVGRTDVERRVAIHTVSATWEGN 64 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 QVWL+L GGA+FAAWP +YA +FSGFY+AM LVL +L RP+AF YR K A A WR WD Sbjct: 65 QVWLVLGGGAIFAAWPALYALSFSGFYLAMFLVLFALILRPVAFKYRSKRASAAWRSRWD 124 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 L +G VP ++FG+A GN+L GVPF FT LR Y GS LL P LLCGL+SL M+ Sbjct: 125 WALFVGGAVPALIFGVAVGNVLQGVPFHFTGDLRPIYGGSLLGLLNPLALLCGLVSLVML 184 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDG--FVLLAQDANG 238 + G WL K G + R++ +AAL F L G +W G G V+ +G Sbjct: 185 VAHGAAWLAFKAEGAVAERARAIGLKAALATAALFTLGGLLIWAGAFGGYRVVSPLPGDG 244 Query: 239 PSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQ 298 PSNPL K V GAW+ NF P L + PLLG PLL + G FL +SL Sbjct: 245 PSNPLTKAVVADAGAWLANFRAHPALALVPLLGIVGPLLAALGFRARHEGLTFLASSLGI 304 Query: 299 FGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSY 358 +I T G+++FP ++PS+ P +LT++D++SS+ TL ML+ +IFLPI+L YT W Y Sbjct: 305 ACIIATVGLSMFPVILPSNTHPGHALTVFDASSSRATLRNMLIATVIFLPIILAYTAWVY 364 Query: 359 YKMWGRMTTETLRRNENELY 378 +WG+++ + + Y Sbjct: 365 RVLWGKVSDRDITAPGSAAY 384 >UniRef50_B3QXC1 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QXC1_CHLT3 Length = 359 Score = 307 bits (788), Expect = 3e-82, Method: Composition-based stats. Identities = 123/360 (34%), Positives = 200/360 (55%), Gaps = 9/360 (2%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW+LLIGV+L+ + I DGFD+G+G L L+A++D+ERR+++NS+G W+GN+VWLI Sbjct: 3 LNTIWYLLIGVLLIGYAILDGFDLGVGAL-HLLAKDDNERRLLLNSIGPVWDGNEVWLIT 61 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GGALFAA+P YA AFSGFY+A +L+L SL R ++ ++R K WR WD IG Sbjct: 62 GGGALFAAFPHAYATAFSGFYLAFMLLLVSLISRAVSIEFRSKRESQAWRNFWDYSFSIG 121 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S++ ++FG+A GN++ G+ +EY G+F+ LLTP+ +L G+ +L + + G + Sbjct: 122 SVLSAILFGVAIGNMVAGIKIGSD----MEYAGTFFDLLTPYTVLAGVFNLALFTMHGAI 177 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 +L +KT G + R + RA + + +++ + Sbjct: 178 YLFVKTEGDLQERVKGWAMRAFFVFLALYVIVTAATLYMKPEMIANFSFGKIQPATGSAH 237 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 + N V S WI +L + G+ FL ++ ++F Sbjct: 238 ELIQS----NQVVISVFAWIIVILNGLAIANIPRTLVHGKELQAFLSSACTIAALVFLFA 293 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 + +FP ++ SS+ P SLT++++ SS+ TL ML++ LI +P+VL YT+ Y+ G+ T Sbjct: 294 VGVFPNMITSSLDPAYSLTIYNAASSEKTLFTMLIMALIGMPLVLSYTISIYWVFRGKTT 353 >UniRef50_D1A2D3 Cytochrome d ubiquinol oxidase, subunit II n=34 Tax=Bacteria RepID=D1A2D3_THECD Length = 363 Score = 301 bits (770), Expect = 4e-80, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 194/369 (52%), Gaps = 42/369 (11%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVA-----RNDDERRIVINSVGAHWEGNQ 61 L +W+LLI V+ + + +GFD G+G L+P++A +D +RR++IN++G W+GN+ Sbjct: 3 LTTVWFLLIAVLWAGYFLLEGFDFGVGVLMPVLAPRKAAHSDTDRRVMINTIGPVWDGNE 62 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWL++AGGA FAA+P YA+ FSGFY+A++L+L +L R +AF+YRGK+ RWR+ WD Sbjct: 63 VWLLVAGGATFAAFPEWYASLFSGFYLALLLILAALIVRGVAFEYRGKVDSDRWRRNWDL 122 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 + GS VP +++G+AF N+L GVP + Y G+ LL P+ LL GL +L + Sbjct: 123 AIFWGSAVPALLWGVAFANILQGVPLD----AQHHYTGTLLTLLNPYALLGGLTTLTVFT 178 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 L G V+L LKT G + +++ A + A + V Sbjct: 179 LHGAVFLALKTRGHVRDQARRAVRYLAAPTVAIAAAFLVITGVR---------------- 222 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 P W + V A RGR GW F ++ Sbjct: 223 -----------------FGVPWTWATTAVAALALAGGVAAALRGRDGWAFTGTAVAIVAT 265 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 + T L+P V+PS++ P SLT+ ++ S+ TL +M + +IF PIVL Y W+Y+ Sbjct: 266 VATMFGDLWPAVLPSTIDPAYSLTVENAASTPYTLKVMTWVAVIFTPIVLAYQAWTYWVF 325 Query: 362 WGRMTTETL 370 R+T E + Sbjct: 326 RKRLTREAI 334 >UniRef50_A1AN69 Cytochrome d ubiquinol oxidase, subunit II n=30 Tax=Bacteria RepID=A1AN69_PELPD Length = 351 Score = 299 bits (765), Expect = 2e-79, Method: Composition-based stats. Identities = 132/375 (35%), Positives = 205/375 (54%), Gaps = 27/375 (7%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 + + IW++L GV+ + ++DGF +G G + +A++D ERR++IN+VG W+GN+ Sbjct: 1 MEAHAFQIIWFVLWGVLWSFYFMTDGFVLGTGFMSGFLAKSDTERRVLINTVGPIWDGNE 60 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWL+ AGGA FAA+P YA FS Y A++L+L +L R +AF++RGKI W+K WD Sbjct: 61 VWLVTAGGATFAAFPTTYALMFSNLYTALLLLLFALIVRGVAFEFRGKIDSPSWKKGWDR 120 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRV-EYLGSFWQLLTPFPLLCGLLSLGMV 180 + I S +P ++FG+AFGN+ G+P + Y GS LL P+ LL G+L + + Sbjct: 121 AITIASFLPSLLFGVAFGNIFKGIPMRNDFSASIFAYDGSLLTLLNPYGLLTGILFVMLF 180 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 + G ++ +KT G + R+ R LW + +L A P+ Sbjct: 181 AVHGSLYAAIKTTGDLSQRAAAMANR---------------LWFPLLAVAVLFLGATYPA 225 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 L +N+++SP+L I PL+ LL + R R FL + L Sbjct: 226 TRL-----------YDNYLKSPLLLIIPLIAVSSLLLVKLYASRDRLHMAFLFSCLTIVF 274 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 V +T LFP ++PSS+ P S+LT+++S+SS LTL IM + LIF+PIV+ Y W Y Sbjct: 275 VCYTGVAGLFPNLIPSSIDPASNLTIYNSSSSLLTLKIMTGVALIFVPIVIAYKAWVYRI 334 Query: 361 MWGRMTTETLRRNEN 375 R+T+E + + Sbjct: 335 FRARVTSEDVLESSE 349 >UniRef50_B7GK13 Cytochrome bd-type quinol oxidase, subunit 2 n=2 Tax=Bacillaceae RepID=B7GK13_ANOFW Length = 360 Score = 297 bits (761), Expect = 4e-79, Method: Composition-based stats. Identities = 125/370 (33%), Positives = 193/370 (52%), Gaps = 31/370 (8%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 +E + IW+ L G+I ++ + DG+ +G G L P +ARN ER + +VG W GN+ Sbjct: 19 MSHEMVAIIWFGLWGLIWTIYFVLDGYTLGTGMLFPFLARNRQERNQLQEAVGPFWGGNE 78 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWLI AGGA FAA+P VYA FS Y M+L+L +LFFR ++ K W+K W Sbjct: 79 VWLITAGGATFAAFPAVYADLFSFLYTPMMLILFALFFRAAGLEFMHKDDAPLWQKSWKW 138 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 I S ++FG+AF NL G+ + Y G+F+ LL P+ LL GLL + + I Sbjct: 139 AFTISSFALALLFGVAFANLFYGLKIGPSG-----YEGTFFSLLHPYGLLGGLLFISLFI 193 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 + G +W+ LK VG + R+ + AA++ + L F Sbjct: 194 VSGALWVMLKAVGEVAERAYAVARPAAIIATVILSLFFVATSNRTPLF------------ 241 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 +NF ++P+LW+ P L F C LL ++ +++ R G F L F + Sbjct: 242 --------------HNFTKAPILWVVPALTFVCALLMLLFVWQKRIGLAFTNICLTIFTL 287 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 + T I +FP ++PS ++ S TL+++ S+L L IML + ++ +PIV+ Y LWSY Sbjct: 288 MATGFIGMFPNMLPSRINDEYSTTLFEAAGSELNLKIMLGVAIVMVPIVVGYQLWSYKLF 347 Query: 362 WGRMTTETLR 371 ++T ET + Sbjct: 348 KEKITKETAK 357 >UniRef50_A9KD50 Cytochrome d ubiquinol oxidase subunit II n=3 Tax=Coxiella burnetii RepID=A9KD50_COXBN Length = 381 Score = 297 bits (760), Expect = 5e-79, Method: Composition-based stats. Identities = 140/378 (37%), Positives = 227/378 (60%), Gaps = 1/378 (0%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 + +Y L+ +WW++IG ILVV+ + GFD G+ ++P + RN+ +RRI++N+ W+GN Sbjct: 3 LLNYTFLKVVWWMIIGSILVVYASTAGFDSGVTMIMPFL-RNETQRRILLNTSAPVWDGN 61 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 W++ AGG LF WP VY+ AFSG Y+ ++ ++ SLF RP +DYRGK+ WR+ WD Sbjct: 62 LTWILFAGGGLFVVWPVVYSTAFSGLYLILLFIMWSLFLRPPGYDYRGKLPSPIWRRSWD 121 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 L I S+VP FG+AFGN LLG PF F R Y GS+++L F +L G S+ MV Sbjct: 122 VALFISSIVPVFFFGLAFGNCLLGFPFHFDSLFRDYYTGSWFELFNGFGILSGTASVLMV 181 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 ++ G ++Q +T G + + A +L+ + F +AG + I G+ L++ + Sbjct: 182 LMHGSAYIQRRTEGDLRELGRRIHYIATVLLTIAFSVAGLLVLYRIKGYTLISYPKDATI 241 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 PL +V GAW+N++ P + P+ + +LT+++ + + F ++L G Sbjct: 242 YPLNNVVIRSVGAWLNSYNHHPWKYFGPIFAYLGIILTLLSNFFRWYTFCFWSSALAIMG 301 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 +I T G TLFPF+MPSS +P SLT+W++TSSQ L++ML + +I ++L Y L++Y+ Sbjct: 302 LIGTIGFTLFPFIMPSSTAPDQSLTVWNATSSQYGLNVMLYVGVILFIVILGYKLYAYHT 361 Query: 361 MWGRMTTETLRRNENELY 378 +W + T T + E + + Sbjct: 362 IWSKQKTITEKDLETDKH 379 >UniRef50_A0KIS6 Cytochrome D ubiquinol oxidase, subunit II n=2 Tax=Aeromonas RepID=A0KIS6_AERHH Length = 375 Score = 296 bits (759), Expect = 7e-79, Method: Composition-based stats. Identities = 177/377 (46%), Positives = 229/377 (60%), Gaps = 2/377 (0%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 DYETL+ IWW L+ +LV F++ DGFD+G+ LLP+VA+ND+ERR+++NSVG WEGNQ Sbjct: 1 MDYETLKLIWWGLVLFMLVGFVVMDGFDLGVAMLLPVVAKNDEERRVLLNSVGPVWEGNQ 60 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWLI GALFAAWP VYAAAFS YV + +L LF RP+ FDYR K+AD WR+ WD Sbjct: 61 VWLIAGAGALFAAWPLVYAAAFSALYVPFMFLLFGLFLRPVGFDYRSKLADPVWRRWWDR 120 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 LV+G L+P +VFG G LL G+PF F LR+ Y + P L C +L +++ Sbjct: 121 ALVVGGLLPTLVFGATLGFLLQGLPFRFDAALRIHY--GAFDFHWPLLLTCMGTALALLL 178 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 L G +LQ KT G I R + L F L G WL VL D NG Sbjct: 179 LHGASFLQCKTQGEIARRCARQSLWLGPLASGLFALGGVWLSQMAGYRVLEIGDINGALT 238 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 PLMK V V W+ NFV P LW P LG P+++ +A R P L + + Sbjct: 239 PLMKEVGVAQQGWLANFVAHPWLWCVPALGLVLPMVSSLASARELPRTALLASGGACASM 298 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 + T I LFPFV+PSS+ P SSLTLWDSTSS+ TL IML IV + +PI + YTLW Y + Sbjct: 299 MLTIAIALFPFVLPSSLDPSSSLTLWDSTSSERTLFIMLGIVGVLMPINIGYTLWVYRVV 358 Query: 362 WGRMTTETLRRNENELY 378 G+M+ + +R++ + LY Sbjct: 359 RGKMSAQQIRQHGHSLY 375 >UniRef50_A5FZ08 Cytochrome d ubiquinol oxidase, subunit II n=15 Tax=Proteobacteria RepID=A5FZ08_ACICJ Length = 379 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 156/378 (41%), Positives = 225/378 (59%), Gaps = 2/378 (0%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M Y L+ IW +L+GV+L I G DMG+G LL V R D ERR + +G HW+GN Sbjct: 1 MELYIALKVIWAVLLGVLLSGLGIMVGMDMGVGALLRFVGRTDAERRTALAVIGPHWDGN 60 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 QVW IL GGA+FAA+P +YA +FS FYV MIL+L S+ RP+AF+YR K+ RWR WD Sbjct: 61 QVWFILGGGAIFAAFPTLYATSFSTFYVVMILLLFSMIMRPVAFEYRSKVDARRWRATWD 120 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSF-WQLLTPFPLLCGLLSLGM 179 +I +P +++G AFGN+L GV F F+ + GSF W LL PF ++CG+LSL + Sbjct: 121 WAFLISGALPMIIYGAAFGNVLQGVGFHFSWDGQYYQDGSFIWYLLNPFAVMCGVLSLAL 180 Query: 180 VILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGP 239 + QGG L ++ G I R++ A LL F + G W+ + P Sbjct: 181 AVHQGGAMLMIRGEGPIAERARRYAVPAGLLAAALFAIGGVWVRFIKGFAYTAPVNPAMP 240 Query: 240 SNPL-MKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQ 298 + PL VA+ GAWM+NF + PVLW+ P +G + +A+ +P G+ + +L Sbjct: 241 ATPLGGPAVAMRAGAWMDNFHQHPVLWLLPAVGLLGMVAGPLALAARKPILGWWLGALAW 300 Query: 299 FGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSY 358 G IFT G +FPF+MPS+ +P SLT+W+++ S L ML L+F+PI+L YT W++ Sbjct: 301 IGTIFTTGAAMFPFLMPSTTAPAQSLTVWNASGSAYNLGWMLAFALVFVPIILSYTAWAF 360 Query: 359 YKMWGRMTTETLRRNENE 376 M G++ TE++ N++ Sbjct: 361 RVMRGKVKTESVIANDHS 378 >UniRef50_B0TEW5 Cytochrome bd ubiquinol oxidase, subunit ii n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TEW5_HELMI Length = 345 Score = 290 bits (743), Expect = 5e-77, Method: Composition-based stats. Identities = 124/355 (34%), Positives = 210/355 (59%), Gaps = 30/355 (8%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L+ W++L+GV+L+ + + DGFD+G+G L L+ ++ DERR +I S+G +W+ NQVWL+ Sbjct: 4 LQITWFVLVGVLLLGYALLDGFDLGVGSLY-LLTKDPDERRRMIYSIGPYWDSNQVWLLT 62 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GGA+FAA+P VYA FSGFY+A++LVL +L FR ++ +++ ++ WRK WD G +G Sbjct: 63 GGGAIFAAFPMVYATVFSGFYLALMLVLFALIFRAVSIEFQHQLDSPGWRKWWDLGFSLG 122 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 SL+P +++G+A GN+L G+P YLG F LL P+ L+ GL+SL + + G Sbjct: 123 SLLPSILYGVAVGNILRGIPLDAN----GGYLGDFLGLLNPYSLVMGLVSLSLFAMHGAA 178 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 ++ ++ G + ++++ + A L ++ FL+ W ++G Sbjct: 179 FIISQSDGALQVKARRWARAAWLTLLPLFLIGTAWSYLGTP------------------- 219 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 +N+ + P+LW+FPL+ A+ G ++L FG++ T Sbjct: 220 ------RLFSNYFDVPLLWVFPLIALLGLAAFPAALKGGNAYGPLGASALTIFGLLTTMA 273 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 +LFP+++P+S + +SLT+++++SS+ TL IML++ LI LPIVL YT + Y Sbjct: 274 ASLFPYIVPASNNLANSLTVFNASSSERTLMIMLILALIGLPIVLTYTAYIYRTF 328 >UniRef50_D1U471 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U471_9DELT Length = 350 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 119/368 (32%), Positives = 196/368 (53%), Gaps = 30/368 (8%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 + L IW++L GV+ V+ I DGFD+G+G LLP +A+N+DE+R ++NS G W+GN+VW Sbjct: 12 HYYLAVIWFVLWGVLWAVYFILDGFDLGVGTLLPFMAKNEDEKRAMLNSTGPFWDGNEVW 71 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 LI AGG FAA+P YA FSG Y A++L+L +L R ++F++R K+ A WRK+WD Sbjct: 72 LITAGGVTFAAFPYAYAQMFSGLYTALMLLLFALIVRGVSFEFRSKVESASWRKLWDTCH 131 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 +GS +P ++ G+AF N+ G+P T + + LL P+ L G+L + + ++ Sbjct: 132 AVGSFLPALLLGVAFANIFRGLPLDETGFSQ----AGLFGLLNPYGLAGGVLFVIIFVMH 187 Query: 184 GGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPL 243 G +WL ++ G + R++ + + ++ +L + V F Sbjct: 188 GALWLCIRATGDLRARAEGLAVKLWPIQVVLTVLFLAYSAVETQLF-------------- 233 Query: 244 MKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIF 303 +N+ PVL++ L +L + G+ + + L G Sbjct: 234 ------------SNYFLYPVLFVILALPVAGLVLMRAYMGAGKWWMAWGSSCLYIGGTAL 281 Query: 304 TAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 +FP ++PS+ +P +SLT+ +S SS LTL IML +VL+FLP+++ Y W+Y Sbjct: 282 FGVAGIFPAIIPSNPNPGNSLTIMNSASSPLTLGIMLGVVLVFLPVIIGYQFWAYKTFAT 341 Query: 364 RMTTETLR 371 M E + Sbjct: 342 PMAKEDIH 349 >UniRef50_A8VUL7 Aspartate kinase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VUL7_9BACI Length = 339 Score = 286 bits (733), Expect = 7e-76, Method: Composition-based stats. Identities = 120/364 (32%), Positives = 206/364 (56%), Gaps = 31/364 (8%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L+ IW++L+ V+++ + + DGFD+GIG L + + ++E+R +INS+G W+GN+VWL+ Sbjct: 3 LQLIWFILLAVLIIGYAVLDGFDLGIGTLFYQLGKTEEEKRTLINSIGPVWDGNEVWLLT 62 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKI-ADARWRKMWDAGLVI 125 GGALFAA+P VYA FSGFY+AM++VL L FR +A +Y K D +++ +I Sbjct: 63 GGGALFAAFPFVYATVFSGFYLAMMVVLFGLIFRAVAVEYYFKCSDDPPMQRLMGKLFMI 122 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GSL+P ++FG+A GNL++G+P + Y +F+ LL P+ LL G++ L +LQG Sbjct: 123 GSLLPALLFGVAMGNLVIGIPMD----QNMNYTATFFHLLHPYALLIGVIGLVGFLLQGT 178 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 + LKT + R+ +K +++ + ++L Sbjct: 179 TYTILKTENALQRRAIKFSKLFVMVLGVLWILGTVAT----------------------- 215 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 + NF P+L++FPLL +L +Y+ + FL +S++ + T Sbjct: 216 --VIFAPHMFTNFTNQPLLFVFPLLTVVAIVLIPFFMYQKKYMAVFLSSSVIITSKLLTL 273 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 LFP ++ + P +SLT+++++SS+ TL++ML+I LI +P+V+ YT + Y+ G+ Sbjct: 274 AGGLFPNLV-TGADPATSLTIYNASSSEYTLTVMLIIALIGMPVVIGYTAFIYWHFRGKA 332 Query: 366 TTET 369 + E Sbjct: 333 SHER 336 >UniRef50_B2UM68 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UM68_AKKM8 Length = 345 Score = 286 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 109/365 (29%), Positives = 189/365 (51%), Gaps = 30/365 (8%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L+ IW++L+GV+ + I DGFD+G G L + + D+ RR+ +N+VG W+GN+VWLI Sbjct: 10 LQIIWFILVGVLFSGYAILDGFDLGTGALQLFI-KGDENRRLTLNAVGPVWDGNEVWLIT 68 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GGALFAA+P VYA+ FSGFY+A +L+L +L FR ++ ++R K WR+ WD I Sbjct: 69 GGGALFAAFPYVYASVFSGFYLAFMLLLLTLIFRAVSIEFRSKQPMKWWRRGWDTTFSIS 128 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 SL+ ++ G+A GN+ G+P + G+F LL P+ +L GL ++ + + GG+ Sbjct: 129 SLLAALLIGVAMGNVTKGIPLD----DHGNFTGTFLSLLNPYSILLGLTTVALFSMHGGI 184 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 +L +KT G + + + + ++ + +L G + + + Sbjct: 185 YLLMKTQGSLQEQIRKLLRPCVIIFTVLIILHGAATLLYVPHVAAALE------------ 232 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 SP ++ L + I+R RPGW F+ + ++ G Sbjct: 233 -------------RSPWIYGIAALAVISIASIWIFIHRNRPGWAFVASCSTMGCMMALFG 279 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 +FP ++ S +P SLTL + +S++ +L +M I ++ +P+VL Y+ Y+ G++ Sbjct: 280 TAMFPNLLYSMPNPEHSLTLANGSSTRESLVVMTYIAILGVPLVLAYSAAIYWVFRGKVQ 339 Query: 367 TETLR 371 Sbjct: 340 LNEHS 344 >UniRef50_A0PP39 Integral membrane cytochrome D ubiquinol oxidase (Subunit II) CydB n=53 Tax=Bacteria RepID=A0PP39_MYCUA Length = 538 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 99/370 (26%), Positives = 183/370 (49%), Gaps = 43/370 (11%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVAR-----NDDERRIVINSVGAHWEGNQ 61 L+ +W+ +I V+ + F I +GFD G+G L+ A + RR +N++G W+GN+ Sbjct: 3 LQELWFAVIAVLFLGFFILEGFDFGVGMLMAPFAHFGTGDPEIHRRTALNTIGPVWDGNE 62 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWLI +G A+FAA+P YA FS Y+ ++ +L + R +A ++RGK+ D++WR + D Sbjct: 63 VWLITSGAAMFAAFPGWYATVFSTLYLPLLAILFGMIVRSVAIEWRGKVDDSKWRALADF 122 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 G+ GS +P +++G+AF L+ G+P +L + S +L + LL GL + G+ + Sbjct: 123 GIAAGSWLPAILWGVAFAILVRGLPVDANGRLAL----SIGDVLNAYTLLGGLATAGLFL 178 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 G V++ LKT G I + +L V + G W + Sbjct: 179 FYGAVFVALKTAGPIRDDAYRFAVVLSLPVTVLVAGFGVWTQLA---------------- 222 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRG-RPGWGFLMASLMQFG 300 W + + V+ ++R GW FL +++ Sbjct: 223 -----------------YGKQWTWALLGVAVVAQMAAVLLVWRRVSDGWAFLCIAVVVAA 265 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 V+ L+P ++PS+++ ++T+++++S+ TL IM + +F P+ ++Y W+Y+ Sbjct: 266 VVLLLFGALYPNLVPSTLNERWNVTVYNASSTPYTLKIMTWVTALFAPLTVVYQAWTYWV 325 Query: 361 MWGRMTTETL 370 R++ E + Sbjct: 326 FRQRISAERI 335 >UniRef50_B0U137 Alkaline phosphatase n=18 Tax=Francisella RepID=B0U137_FRAP2 Length = 398 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 143/395 (36%), Positives = 223/395 (56%), Gaps = 21/395 (5%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 + L+ I WL++GV++ + + GFD G+G L V ++D E+R +IN+VG W+G+QVW Sbjct: 4 DVLQIISWLVVGVLIFLVAATVGFDFGVGILAKFVGKDDYEKRAIINTVGPTWDGSQVWF 63 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 I AGGA+FA WP+VYA +FSG Y+A++LVL LF RP AF+YR KI + W+ WD L+ Sbjct: 64 ITAGGAIFAIWPQVYATSFSGLYIAILLVLWGLFLRPPAFEYRKKIDNPTWKNFWDWMLL 123 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEY-----------LGSFWQLLTPFPLLCG 173 +GS++P VV G+A GNL LG P ++ R+ Y + LLTPF LL G Sbjct: 124 LGSVIPIVVMGVAIGNLYLGFPISYDDTARLIYGTVTDGQYQSMWVTLIHLLTPFALLFG 183 Query: 174 LLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLA 233 + +L M ++ G + +L+T GV+ R + T A + ++ F++A W+ + Sbjct: 184 IFALNMSLMHGSAYAKLRTDGVLRDRFRKITNVTATIYLVLFVVAAIWIALIPGYQYSTG 243 Query: 234 QDANGPS----NPLMKLVAVLPGAWMNNFVESP--VLWIFPLLGFFCPLLTVMAIYRGRP 287 S +P V +W NF ++ +W P+L F LL + + + Sbjct: 244 ASCTYASEALQHPFSAGVITSDHSWYYNFTQAKTIWMWFAPILAFVGALLVIKFNNKDKD 303 Query: 288 GWGFLMASLMQFGVIFTAGITLFPFVMPSSV-SPISSLTLWDSTSSQLTLSIMLVIVLIF 346 G F+ + G + T G LFPF+M S+V + SLT+++++SSQ +L +L +I Sbjct: 304 GAAFIASMASLLGAVLTVGFALFPFIMVSNVGNFQYSLTVFNASSSQTSLIGILCAAVII 363 Query: 347 LPIVLLYTLWSYYKMW---GRMTTETLRRNENELY 378 LPI+ YT + Y KMW R++ E ++ N +ELY Sbjct: 364 LPIIFSYTFFVYKKMWANGRRVSAEEVKANSHELY 398 >UniRef50_C0W2T5 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Actinomyces RepID=C0W2T5_9ACTO Length = 378 Score = 282 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 112/394 (28%), Positives = 188/394 (47%), Gaps = 51/394 (12%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 L +W++LI V+ + ++ +GFD G+G LL ++ RN+ ERR ++ ++G HW+GN+VW Sbjct: 1 MTLLSILWFILIAVLWIGYLTLEGFDFGVGMLLKILGRNEQERRAMMKTIGPHWDGNEVW 60 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L+ AGGA FAA+P Y FSG Y+ + L+L L R A ++R KI +WR WD Sbjct: 61 LLTAGGATFAAFPEWYGTLFSGAYLVLFLILLCLIVRICAIEWRSKINSQKWRDNWDWAH 120 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRV-------------------EYLGSFWQL 164 + + +P +++G AF NL+ G+ E G F+ L Sbjct: 121 TVSTWLPSILWGAAFANLVQGMKIEVVEVATGNVIPAENVPSETLLAGASHELTGGFFSL 180 Query: 165 LTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWV 224 LTPF +L GL++ + + G ++ LKT G + R++ +++A+ + W + Sbjct: 181 LTPFTILGGLVTCSLFLTHGALYTALKTAGDLSARAEAFARKSAIASTALTAVWALWAQL 240 Query: 225 GIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYR 284 + + + WI L+ + +++ + Sbjct: 241 A--------------------------------YSLNALAWIPLLVAAVFLIASLLMTWA 268 Query: 285 GRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVL 344 GR GW F + + + P VM SS+ SLT+ + S +TL+IM V + Sbjct: 269 GRQGWAFSLHFGGIAFAVVFIFSAMAPNVMRSSIDDSYSLTIAQAASDDVTLAIMTVAAI 328 Query: 345 IFLPIVLLYTLWSYYKMWGRMTTETLRRNENELY 378 IF+P+VL YT+W Y R++ E + NE L+ Sbjct: 329 IFVPVVLFYTIWGYKVFSKRVSAEKIDPNEGGLH 362 >UniRef50_Q816N2 Cytochrome d ubiquinol oxidase subunit II n=73 Tax=Bacillus RepID=Q816N2_BACCR Length = 345 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 106/374 (28%), Positives = 174/374 (46%), Gaps = 31/374 (8%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 + ++ L IW+ L GVI V+ I DG+ +G G + P V ++ ER + ++G W GN Sbjct: 3 LMSHDMLAIIWFGLWGVIWTVYFILDGYALGNGMIFPFVTKDRQERNQLQEAIGPFWGGN 62 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 +VWLI AGGA FAA+P YA FS Y + LVL +LF R ++ K W+K Sbjct: 63 EVWLITAGGATFAAFPVTYANMFSYLYTPLFLVLLALFARAAGLEFMHKDDSPIWQKTCK 122 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 IGS + +FG+ F NL G+ Y G+ LL + +L GL + Sbjct: 123 WAFAIGSFLIAFLFGVTFANLYYGLQIGKNG-----YEGNLLSLLNHYGILGGLFFTAIF 177 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 ++ G +W+ +KT G + R+ + ++ + + + F Sbjct: 178 VVSGALWVMIKTTGEVSDRAYKIARPFSMAAAIILAIFYVATANRTNLF----------- 226 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 NF E PVL+I P+L +L ++ +Y+ + G F L Sbjct: 227 ---------------QNFTEYPVLFILPVLAMLMSVLALIMVYKHKIGLAFTFVCLTIAM 271 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 + T +FP ++PS ++ S TL+++ SQL L IM + ++ +PIV+ Y LWSY Sbjct: 272 FMTTGFAGMFPRMLPSRINDAYSTTLYNAAGSQLNLKIMFFVAMVMVPIVIGYQLWSYSI 331 Query: 361 MWGRMTTETLRRNE 374 ++ ++ + Sbjct: 332 FKNKIHKDSAKGYH 345 >UniRef50_A7HAW4 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Bacteria RepID=A7HAW4_ANADF Length = 342 Score = 281 bits (718), Expect = 4e-74, Method: Composition-based stats. Identities = 113/368 (30%), Positives = 183/368 (49%), Gaps = 30/368 (8%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L+ +W+ L+GV+L + + DGFD+G+G L L+AR D++RR+++NS+G W+GN+VWL+ Sbjct: 3 LQVLWFALLGVLLAGYAVLDGFDLGVGTLY-LLARRDEQRRVLLNSIGPVWDGNEVWLVT 61 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GGALFAA+PR YA FS Y +L++ +L FR +A ++R + WR WD Sbjct: 62 FGGALFAAFPRAYATTFSALYTPFMLLILALIFRAVAIEFRSRRPSRAWRTTWDVAFFAA 121 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S + P++FG A NL+ G+P + ++ LG LL+P+ LL G +L + L G Sbjct: 122 SALSPLLFGAAIANLMRGLPVRADGEAQIALLG----LLSPYALLVGAFTLSLFALHGAT 177 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 WL LKT G +H + AA + +LL + V I Sbjct: 178 WLLLKTEGELHEDVRRWAWTAAGVFSTLYLLTTIFTLVAIP------------------- 218 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 N E W+ +L A+Y R G F+ ++ ++ G Sbjct: 219 ------RATANLAELRWGWVVVVLNVLAAGNVPRAVYLRRYGQAFVSSAATIVALVVLFG 272 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 + +P ++ S++ P S+T+ + +S+ TL M +I + +P VL YT Y+ G++ Sbjct: 273 LAQWPNLVTSTLDPAFSITIRNGSSTAPTLRNMAIIAAMGMPFVLGYTGLIYWVFRGKVR 332 Query: 367 TETLRRNE 374 R Sbjct: 333 EGEHRGGH 340 >UniRef50_P94365 Cytochrome d ubiquinol oxidase subunit 2 n=76 Tax=Bacillales RepID=CYDB_BACSU Length = 338 Score = 278 bits (711), Expect = 3e-73, Method: Composition-based stats. Identities = 99/366 (27%), Positives = 173/366 (47%), Gaps = 32/366 (8%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 +L +W++L+ V+ V F +GFD G+G + N+ ERR++IN++G W+ N+VW Sbjct: 1 MASLHDLWFILVAVLFVGFFFLEGFDFGVGMATRFLGHNELERRVLINTIGPFWDANEVW 60 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L+ GA+FAA+P YA SG+Y+ ++VL +L R +AF++RGK+ +W K+WD + Sbjct: 61 LLTGAGAIFAAFPNWYATMLSGYYIPFVIVLLALMGRGVAFEFRGKVDHLKWVKVWDWVV 120 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 GSL+PP V G+ F L G+P + + + +L G+ + Sbjct: 121 FFGSLIPPFVLGVLFTTLFRGMPIDADMNIHAHVS----DYINVYSILGGVTVTLLCFQH 176 Query: 184 GGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPL 243 G +++ L+T+G + R++ ++ +V + L D F + Sbjct: 177 GLMFITLRTIGDLQNRARKMAQKIMGVVFVAVLAFAALSAYQTDMFTRRGE--------- 227 Query: 244 MKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIF 303 + +L C +L + I + + GW F M + Sbjct: 228 -------------------ITIPLAVLIVICFMLAAVFIRKKKDGWTFGMTGAGLALTVG 268 Query: 304 TAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 I+LFP VM SS+ LT+ +++S +L +M + L LP V+ +WSYY Sbjct: 269 MIFISLFPRVMVSSLHSAYDLTVANASSGDYSLKVMSIAALTLLPFVIGSQIWSYYVFRK 328 Query: 364 RMTTET 369 R++ + Sbjct: 329 RVSHKE 334 >UniRef50_C2C3U7 Cytochrome bd ubiquinol oxidase subunit II n=2 Tax=Listeria RepID=C2C3U7_LISGR Length = 350 Score = 278 bits (711), Expect = 3e-73, Method: Composition-based stats. Identities = 101/364 (27%), Positives = 181/364 (49%), Gaps = 32/364 (8%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 +L +W+LL+ V+ + F +GFD G+G +A++ +ER++++N++G W+ N+VWLI Sbjct: 15 SLNELWFLLVAVLFIGFFFLEGFDFGVGMATRFLAKSSNERKMLVNTIGPFWDANEVWLI 74 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 AGGA+FAA+P YA FSG+Y+ +++L +L R ++F++RG+ W K WD + Sbjct: 75 TAGGAIFAAFPNWYATMFSGYYLPFVVLLLALIGRGVSFEFRGQKDTKTWLKTWDWIIFF 134 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GSL+PP + G+ F L G+P L G F + F + G+ + + +L G Sbjct: 135 GSLLPPFLLGVLFSTLAKGMPIDKEMNLH----GGFTDYVNIFSVWGGITIVLICLLHGL 190 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 ++ L+ G + +R+ K+ ++ L+ +V D F Sbjct: 191 QFIALRVEGELRIRATKLAKKVWFATVVALLIFVALAFVYTDLFT--------------- 235 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 ++ + L LL+ +++GR F L + Sbjct: 236 -------------ARPVLVPLMIGLVVVFYLLSGFFLWKGREILTFTFGGLGIVFTVGAI 282 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 + LFP VM SS++ +LT++++ S +LS+M ++ + LP VL Y +WSYY R+ Sbjct: 283 FVGLFPRVMISSITEAYNLTIYNAASGHYSLSVMTIVAVTLLPFVLGYQIWSYYVFRKRV 342 Query: 366 TTET 369 + + Sbjct: 343 SDKE 346 >UniRef50_A7ZAA3 CydB n=16 Tax=Bacillales RepID=A7ZAA3_BACA2 Length = 338 Score = 276 bits (707), Expect = 8e-73, Method: Composition-based stats. Identities = 104/364 (28%), Positives = 179/364 (49%), Gaps = 32/364 (8%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 +L +W++L+ V+ V F +GFD G+G + N+ ERR+++N++G W+ N+VWLI Sbjct: 3 SLHDLWFILVSVLFVGFFFLEGFDFGVGISTRFLGHNELERRVLVNTIGPFWDANEVWLI 62 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 GA+FAA+P YA SG+Y+ I++L +L R +AF++RG++ + +W K WD + Sbjct: 63 TGTGAIFAAFPNWYATMLSGYYIPFIIILLALMGRGVAFEFRGQVNNLKWVKTWDWVIFF 122 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GSL+PP VFG+ F +L GVP + F ++ + +L G + L G Sbjct: 123 GSLIPPFVFGLIFTSLFRGVPIDG----HMNIHAGFSDIVNVYSVLGGAAVTLLSFLHGL 178 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 +++ L+T+G + R++ KR ++ L L D F A Sbjct: 179 MFITLRTIGDLQERARKMAKRVIGVIFLVVLAFFAMSAYDTDMFTRRAN----------- 227 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 + +L C +L ++ + + + GW F M + Sbjct: 228 -----------------ITIPVFVLIVICNVLAIVFMSKKKDGWAFGMTGAGLALTVAMI 270 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 I+LFP VM SS+ LT+ +++S +L +M ++ L LP V+ +WSYY R+ Sbjct: 271 FISLFPRVMVSSLKSAYDLTVANASSGDYSLKVMTIVALTLLPFVIGSQIWSYYVFRKRV 330 Query: 366 TTET 369 + + Sbjct: 331 SHKE 334 >UniRef50_D1R937 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R937_9CHLA Length = 342 Score = 276 bits (706), Expect = 9e-73, Method: Composition-based stats. Identities = 104/369 (28%), Positives = 187/369 (50%), Gaps = 30/369 (8%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M + +L FIW+ ++ + I DGFD+G+G L L ++ D+ERR+++NS+G W+GN Sbjct: 1 MINASSLEFIWFSAFVALVTGYAILDGFDLGVGML-HLFSKKDEERRLMLNSIGPVWDGN 59 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 +VWL+ AGGALFA +P +YA S FYV ++++L L FR +A ++R K WR MWD Sbjct: 60 EVWLVTAGGALFAGFPDIYATLCSAFYVPLMILLGGLIFRAVAIEFRSKRPMPWWRWMWD 119 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 + SL+ + G+ GNL+ G+P E+ G LL P+ LL G++++ + Sbjct: 120 VLFSLASLIIALALGVVLGNLIRGLPLDAQK----EFTGDLSSLLHPYALLIGIMAVALF 175 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 + GG+++ +KT G +H + + + ++ + L + + + Q Sbjct: 176 CMHGGIFILMKTEGELHDKIRSWINPFIIFFIITYSLVTMATLIYMPHMIKTIQ------ 229 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 E P+ ++ + I +G+ F+ + Sbjct: 230 -------------------ERPIFFLLAVGNMLSIANIPREINQGKDWLAFVSSCFNIVF 270 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 ++ + +P V+ + P SLT+++S SS+ TL I+++I LI +P+VL YT Y+ Sbjct: 271 LMLLYAVGTYPEVVRAINDPSLSLTIYNSASSEKTLEILIIIALIGIPLVLAYTTAIYWI 330 Query: 361 MWGRMTTET 369 G++ ++ Sbjct: 331 FHGKVKLDS 339 >UniRef50_Q0BVW7 Cyanide-insensitive cytochrome bd-type quinol oxidase subunit II n=47 Tax=Proteobacteria RepID=Q0BVW7_GRABC Length = 342 Score = 276 bits (706), Expect = 9e-73, Method: Composition-based stats. Identities = 106/365 (29%), Positives = 174/365 (47%), Gaps = 29/365 (7%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 E L +IW ++I V ++ +++ DGFD+G G L L R +++R +++NS+ W+GN+ WL Sbjct: 4 ENLPYIWGMIIAVAVLAYVLLDGFDLGCGILF-LAEREEEDRDVMVNSIAPVWDGNETWL 62 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 ++ GG L A +P YA FS FY +I +L +L FR +AF++R K R R+ WD Sbjct: 63 VMGGGGLLAVFPVAYAILFSAFYPTIIAMLLALVFRGVAFEFRFKAHTLRGRRWWDRAFC 122 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQG 184 +GSLV + G+ G +L GV Y G ++ LTPF +LCG+ + L G Sbjct: 123 LGSLVAALCQGMTLGGILQGV-----HHNGFAYTGGWFDWLTPFTVLCGVAVVVGYTLLG 177 Query: 185 GVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLM 244 WL LKT +H+R++ K +L++L W + + + L G Sbjct: 178 ACWLILKTENGLHVRARHYAKPLFILLLLLIAAVSLWTPLLNETYRLRWFSWPGIV---- 233 Query: 245 KLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFT 304 + PLL L ++ R L A M Sbjct: 234 ------------------LTAPVPLLVAAMALGFWRSLQHKRHAAPLLYAMGMFLLCYVG 275 Query: 305 AGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 GI+LFP ++P + + L+L D+ + + +LV ++ +P+VL Y +SY+ G+ Sbjct: 276 LGISLFPNIVPPA-HGTTPLSLVDAAAPAASQMFLLVGAVVLIPMVLGYNAYSYWIFRGK 334 Query: 365 MTTET 369 + Sbjct: 335 VRHGE 339 >UniRef50_C1DWD8 Cytochrome D ubiquinol oxidase, subunit II n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DWD8_SULAA Length = 344 Score = 274 bits (701), Expect = 4e-72, Method: Composition-based stats. Identities = 122/368 (33%), Positives = 196/368 (53%), Gaps = 30/368 (8%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M TL IW+LL GV LV + ++DGFD+G G L ++++ RRI+ N++ W+GN Sbjct: 3 MEMLTTLEGIWFLLAGVFLVGYALTDGFDLGTGILTIFTKKDEN-RRILYNAIAPVWDGN 61 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 +VWLI GG LFAA+P VYAA+FSGFY+A++LVL +L R +AF+YR K WR WD Sbjct: 62 EVWLIAGGGMLFAAFPVVYAASFSGFYLAILLVLWALIGRAVAFEYRNKKETPLWRNTWD 121 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 IG+ VP ++FG+A GN ++GVP Y G F+ LL P PLL G ++ M Sbjct: 122 WIYWIGNFVPALLFGVAVGNAVIGVPID----QEGIYRGDFFTLLRPIPLLMGFVAAFMF 177 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 ++ G +L KT G + ++ A ++ + + + Sbjct: 178 LMHGSAYLLRKTEGEVFELAKKAAYIGFFGYVITLAITDFLM------------------ 219 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 ++ +N+ + P+ WI P +L + ++L G Sbjct: 220 -------VIVAPFLYDNYFKYPLFWIAPAFIIIGLILYFKNLVSNNYDKVIYGSTLTTVG 272 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 + T + +P +M SS++P +LT+W+S SS +TL++MLV+ ++ +PIV+ YT + Y Sbjct: 273 TVLTIALASYPVLMRSSLNPEYNLTIWNSASSHITLTVMLVVTILIMPIVIFYTTYVYRV 332 Query: 361 MWGRMTTE 368 G++++E Sbjct: 333 FKGKVSSE 340 >UniRef50_C9KPM5 Cytochrome D ubiquinol oxidase, subunit II n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPM5_9FIRM Length = 338 Score = 273 bits (698), Expect = 8e-72, Method: Composition-based stats. Identities = 116/368 (31%), Positives = 191/368 (51%), Gaps = 35/368 (9%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L +W++LI V+ F +GFD G+G LLP ++ +++ER ++ ++ W+GN+VW+I Sbjct: 4 LTILWFILITVLFTGFFFLEGFDYGVGGLLPFLSSDEEERGEILRTITPVWDGNEVWMIT 63 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGGALFAA+P VYA FS FY+A+ L+L +L R +AFD RG+ W++ WD + G Sbjct: 64 AGGALFAAFPHVYATMFSAFYLALFLMLVALILRGVAFDLRGRQESRCWKRFWDGAICFG 123 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S+VP ++G+A NL+ G+P ++ Y+G F+ LLTP+ ++ GL L + + G Sbjct: 124 SVVPAFLWGVAVTNLIAGLPI----NEKMIYMGGFFDLLTPYTIVGGLAFLFVFLFHGTA 179 Query: 187 WLQLK-TVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 +L L+ + LR Q + + ++ F+L D Sbjct: 180 FLTLRLAKTSLILRCQEVALKTGAIAVIFFVLCMAMTLTYTD------------------ 221 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 PV + + ++ ++++ G+ FL++S Sbjct: 222 ------------LFTKPVAAVALVGAALFFVMAMLSMKLGKGKASFLLSSAAIVATTVAF 269 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 LFP +M SS++P SLT+ +++SS TLS+M V IF+PIVL+Y WSYY R+ Sbjct: 270 FAGLFPRLMVSSLNPAWSLTITNASSSPYTLSVMTVAAGIFVPIVLIYQSWSYYIFRKRV 329 Query: 366 TTETLRRN 373 T + + Sbjct: 330 TAKDAEEH 337 >UniRef50_O67371 Cytochrome oxidase d subunit II n=1 Tax=Aquifex aeolicus RepID=O67371_AQUAE Length = 366 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 110/388 (28%), Positives = 185/388 (47%), Gaps = 46/388 (11%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 E L IW++L+G I+ ++ DGFD+G+G + P +A++++E+RI++NS+G W+ N+VW Sbjct: 1 MELLPVIWFVLLGFIIAMYAALDGFDLGVGIVYPFLAKDEEEKRILLNSIGPVWDANEVW 60 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 LILAGGALFAA+P YA SG Y+ +IL+L L R + DYRGK+ +K D Sbjct: 61 LILAGGALFAAFPVAYATLQSGLYLPVILILFMLILRAIGIDYRGKMPTPALKKTMDMVF 120 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTP---------------QLRVEYLGSFWQLLTPF 168 +GSL +FG+ GN++ G+P Y G +L P+ Sbjct: 121 FLGSLGVTFLFGLTLGNVIKGLPVKLVEKELYGEVVKTHMICADQDCSYTGLLINILDPY 180 Query: 169 PLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDG 228 LL LL++ V + G ++ T G + R+ K+ L +L+ + Sbjct: 181 ALLVALLTVSFVAMHGAIYAAYVTNGDLSHRAASLAKKLWFNSALLYLIVHILTMIYHP- 239 Query: 229 FVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPG 288 + N+ ++ + + ++A+ R + Sbjct: 240 ------------------------LLIKNYFTRMFIFPALPIVIVAFITIIVALNRQKYS 275 Query: 289 WGFLMASLMQFGVIFTAGITLFPFVMPSSVS------PISSLTLWDSTSSQLTLSIMLVI 342 F ++ M F I A +++P ++PS P+ S+T+++S SS+ TL ML+I Sbjct: 276 LAFWSSTAMIFSAIGIAFASIYPTLVPSIYDENPFENPVHSITVFNSASSEKTLLTMLII 335 Query: 343 VLIFLPIVLLYTLWSYYKMWGRMTTETL 370 LI +P+VL Y + Y WG++ Sbjct: 336 ALIGVPMVLTYKFFVYRIFWGKVKVPKE 363 >UniRef50_A5CR84 Cytochrome bd-type menaquinol oxidase subunit II n=4 Tax=Actinomycetales RepID=A5CR84_CLAM3 Length = 334 Score = 270 bits (691), Expect = 5e-71, Method: Composition-based stats. Identities = 115/369 (31%), Positives = 187/369 (50%), Gaps = 37/369 (10%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW+ +I + V + + DGFD G+G LP +A++D +RR++IN++G W+ N+ WLI+ Sbjct: 3 LTLIWFGVIAFLFVGYFVLDGFDFGVGMSLPFLAKDDTDRRVLINTIGPVWDLNETWLIV 62 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AG ALFAA+P YA FSGFY+ ++ +L +L R ++F++R + A RWR +DA +V+G Sbjct: 63 AGAALFAAFPEWYATMFSGFYLLLLAILITLILRGVSFEFRHQGASDRWRGWFDAMIVVG 122 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S+VP ++G+ F N++ GVP +Y GS LL P+ LL GL +L + ++ G Sbjct: 123 SVVPSFLWGVVFANVVRGVPMD----RHHDYTGSTLDLLNPYALLGGLTTLSLFLVNGLQ 178 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 + LKT G I R++L + R + ++ W + Sbjct: 179 FAALKTDGPIRARARLLSMRVGAVTIVIAATFLVWTTLT--------------------- 217 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 S + L + + +A RGR W F + + + + Sbjct: 218 ------------HGSAPSGLVSALAAVALVGSYLANVRGRERWAFGLLAATIALAVASLF 265 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 L PFVMP+S LTL +++SS TL+IM LP++L Y W+Y+ R+T Sbjct: 266 TALHPFVMPASNDAAYGLTLENASSSPYTLTIMTWAAGFALPLILAYQAWTYWVFRKRIT 325 Query: 367 TETLRRNEN 375 + + + Sbjct: 326 RAVIAQAAH 334 >UniRef50_C8WEN7 Cytochrome d ubiquinol oxidase, subunit II n=14 Tax=Proteobacteria RepID=C8WEN7_ZYMMN Length = 340 Score = 269 bits (689), Expect = 9e-71, Method: Composition-based stats. Identities = 83/364 (22%), Positives = 162/364 (44%), Gaps = 33/364 (9%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 L +W L V ++++++ DGFD+GIG L +++ R +++N++ W+GN+ W++ Sbjct: 7 WLPVVWACLAAVGILIYVVLDGFDLGIGILFA-TQKDEKHRDVMMNTIAPVWDGNETWMV 65 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 G L A+ Y+ Y+ +I++L +L FR +AF+YR R +W A + Sbjct: 66 FGGAVLLGAFQTAYSVILPALYLPLIVMLLALIFRGVAFEYRVHAHSKEARCLWGAAFMG 125 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GS + G+ G LL G+ + GS L PF + CG+ + L G Sbjct: 126 GSTLATFCQGMVLGGLLQGI-----KTTDHHFTGSALDWLNPFSIFCGVALVIGYGLLGA 180 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 WL +T G + ++ A + L+++C + W + ++ Sbjct: 181 GWLIWRTEGELQAYARRAARCLGSLLLVCIAVVAVWTPMLRSTYL--------------- 225 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 W N+ + + +L ++ ++ G+ FL A Sbjct: 226 ------NTWTNSSSHAVAAVVLAVLAVLVSVIFFRSLKSGKDRTPFLCALGWFILSYLGL 279 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 ++ +P+++P + T+W ++S + + +LV +I LP+VL YT++ Y G++ Sbjct: 280 ALSAWPYIVPPYI------TIWQASSPVTSQTFLLVGTVILLPLVLAYTIYCYKIFHGKV 333 Query: 366 TTET 369 T+ Sbjct: 334 TSSD 337 >UniRef50_Q2IFY9 Cytochrome d ubiquinol oxidase, subunit II n=5 Tax=Bacteria RepID=Q2IFY9_ANADE Length = 349 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 124/363 (34%), Positives = 194/363 (53%), Gaps = 30/363 (8%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW++L+GV++ + + DGFD+G+G L L AR+++ER++ + ++G W+GN+VWL+ Sbjct: 3 LNVIWFVLVGVLIAGYAVLDGFDLGVGVL-SLFARDEEERQVHVKAIGPVWDGNEVWLLT 61 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GGALFAA+P VYA FSGFY+A++L+L +L R +A ++R ++ A WR+ +D +G Sbjct: 62 GGGALFAAFPVVYATVFSGFYLALMLLLLALIARAVALEFRSQLDGAAWRRGFDLAFGVG 121 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 SL+P V+ G+A GN+L GVP E+ GSF LL P+P+L GL+SL M L G + Sbjct: 122 SLLPAVLLGVAVGNVLRGVPVTAAQ----EWAGSFLGLLHPYPVLVGLVSLSMFTLHGAL 177 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 WL+LK G + R R Sbjct: 178 WLRLKAEGALEARMARWVPRLW-------------------------GAFAATYAIATAA 212 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 V + +P+ LL + RG G FL +SL +I A Sbjct: 213 SLVEAPHLFAGALANPLFLALTLLVVASIGAIPVLSRRGAAGKAFLASSLAIVSMILVAA 272 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 +++FP ++PSS+ P LT+++++SS TL++MLVI L+ +P+V+ YT Y G++ Sbjct: 273 VSMFPRLVPSSIDPAYDLTVYNASSSPRTLAVMLVIALVGMPLVIAYTALVYRVFRGKVR 332 Query: 367 TET 369 Sbjct: 333 PGA 335 >UniRef50_C7RCZ4 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RCZ4_KANKD Length = 338 Score = 267 bits (683), Expect = 5e-70, Method: Composition-based stats. Identities = 104/362 (28%), Positives = 167/362 (46%), Gaps = 36/362 (9%) Query: 8 RFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILA 67 IW LI ++ ++I DGFD+GIG L P + +N ++ +NSV W+GN+ WL+L Sbjct: 10 AMIWAGLIAFAVLAYIILDGFDLGIGILFPFI-KNKTDQETAMNSVAPIWDGNETWLVLG 68 Query: 68 GGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGS 127 GG LFA +P Y+ Y+ +IL+L L FR +AF++ + ++ + WD G +GS Sbjct: 69 GGGLFAVFPLAYSVIMPALYMPIILMLLGLIFRGVAFEFHWRTKNS--QDWWDRGFFLGS 126 Query: 128 LVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVW 187 LV + GIA G L+ G+ A Y G +W LTPF + G+ +L G W Sbjct: 127 LVATLCQGIALGALVQGITVA-----DRAYAGGWWDWLTPFSITTGIALAMGYVLLGATW 181 Query: 188 LQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLV 247 L +KT G + +S K AA L +L + W+ ++ DA Sbjct: 182 LNMKTTGELQKQSVQFAKIAAWLTLLFIGIISLWMVFIEQQYLHRWFDAPNLY------- 234 Query: 248 AVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGI 307 L I PL FC + + +GR F+ A + I Sbjct: 235 ---------------YLIIVPLAVLFCGFQLLNGLRKGRETSPFMYAIGLFVLSYIGILI 279 Query: 308 TLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTT 367 + +P ++P S+T+W + + +L +LV LPI++ YT ++Y+ G++ Sbjct: 280 SFYPNLVPP------SITIWQAAAPDDSLKFLLVGAAALLPIIIGYTAYAYWVFRGKVKA 333 Query: 368 ET 369 Sbjct: 334 NE 335 >UniRef50_B6WVU2 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WVU2_9DELT Length = 344 Score = 263 bits (673), Expect = 8e-69, Method: Composition-based stats. Identities = 114/370 (30%), Positives = 199/370 (53%), Gaps = 30/370 (8%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 ETL+ IW++L ++ V+ + DGFD+G+G LLP + N++ERRI+ N+ G W+GN+VWL Sbjct: 3 ETLQVIWFILWALLWAVYFVLDGFDLGLGSLLPFIGSNEEERRIMYNAAGPFWDGNEVWL 62 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 I AGG FAA+P+VYA FS Y ++++L +L FR ++F++RGK+ WR WD Sbjct: 63 ISAGGVTFAAFPKVYAVMFSALYAPLLILLFALIFRAVSFEFRGKVESGVWRGFWDLVHF 122 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQG 184 + +LVP ++ G+ F NL +G+P + G+ L+ + + + L M +L G Sbjct: 123 LSNLVPSLLLGVTFANLFMGIPIDGE----GVFHGTLMGLVNGYGIAGAIFFLVMFMLHG 178 Query: 185 GVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLM 244 +WL +K+ G + R+ + ++++ + + D F Sbjct: 179 SLWLAIKSQGELQTRAVASATLLWPVMLILLVAFLVLTFFNTDLF--------------- 223 Query: 245 KLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFT 304 NN+ +P+L + P++ L + RG+ ++ +++ GV F Sbjct: 224 -----------NNYWSNPLLLLLPVVALAGLLGVRCMLRRGQLWKAWMCSAVYIIGVTFF 272 Query: 305 AGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 + +FP ++ SS+ P ++LT ++++SS+LTL IML + L+ +PIVLLY W Y Sbjct: 273 GVMGMFPRMLISSIDPTATLTAFNASSSELTLKIMLGVALVMVPIVLLYQFWVYRLFSHS 332 Query: 365 MTTETLRRNE 374 ++ E L+ Sbjct: 333 LSAEDLKDEH 342 >UniRef50_D1BV47 Cytochrome d ubiquinol oxidase, subunit II n=7 Tax=Actinomycetales RepID=D1BV47_XYLCX Length = 362 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 194/369 (52%), Gaps = 43/369 (11%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVAR-----NDDERRIVINSVGAHWEGNQ 61 L +W++LI V+ +++ +GFD G+G LL + R DERR++IN++G W+GN+ Sbjct: 3 LSILWFVLIAVLWTGYLVLEGFDFGVGMLLSIFPRGTAKQKHDERRVLINTIGPVWDGNE 62 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWL+ AGGA FAA+P YA FSGFY+ ++L+L +L R +AF+YRGKIA A W + +D Sbjct: 63 VWLLTAGGATFAAFPEWYATLFSGFYIPLLLILVALIVRVVAFEYRGKIASAVWARRFDV 122 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 L IGS VP V++G+AF NL+ GV Q Y+G FW LL PF LL GL +L + + Sbjct: 123 LLQIGSWVPAVLWGVAFANLVRGVQLDVDHQ----YVGGFWALLNPFALLGGLTTLVLFL 178 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 L G V+L LKT G + LR++ R +L ++ W V Sbjct: 179 LHGSVFLALKTDGELRLRARTFAARLSLAAVVIAGGWAVWAQVA---------------- 222 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 W + C + V+ RGR W F ++++ Sbjct: 223 -----------------FSVTWTWAAVAVAALCLVGVVVTNARGRESWAFTLSAVAIVAA 265 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 + +++P VMP + SL++ ++S+ TL++M + +I P+V+ Y W+Y+ Sbjct: 266 VVLIFGSMYPDVMP-GLDGGPSLSIAAASSTPYTLTVMTWVAVILTPVVIAYQSWTYWVF 324 Query: 362 WGRMTTETL 370 R+TT L Sbjct: 325 RRRLTTSDL 333 >UniRef50_Q6MAP6 Putative cytochrome bd-I oxidase subunit II n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MAP6_PARUW Length = 310 Score = 261 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 97/338 (28%), Positives = 166/338 (49%), Gaps = 30/338 (8%) Query: 35 LLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVL 94 +L L A+ D ERR+++NS+G W+GN+VWL+ AGGALFA +P +YA S FYV ++ +L Sbjct: 1 MLHLFAKKDIERRVMLNSIGPVWDGNEVWLVTAGGALFAGFPDIYATMLSAFYVPVMALL 60 Query: 95 CSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLR 154 +L FR +A ++R K A WR WD +GSL+ + G+ GNL+ G+ Sbjct: 61 SALIFRAVAIEFRSKKQMAWWRWTWDIAFSLGSLMIAFILGLVMGNLIRGMQLDGYK--- 117 Query: 155 VEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLC 214 E++G LL P+ LL G +++ + ++ G +++ +KT G H R ++ + ++ Sbjct: 118 -EFIGQLEDLLQPYALLVGGMTVFLFLMHGSIYILMKTEGEFHDRMRMKAVSCIIFFIIT 176 Query: 215 FLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFC 274 + + + + + F +P +I L+ Sbjct: 177 YAITTMATLIYMP-------------------------HMIEAFRHNPFFFIIALINLLA 211 Query: 275 PLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSP-ISSLTLWDSTSSQ 333 IY G+ F+ + L ++ I +P V+ S P + SLT+++S SS Sbjct: 212 IANIPREIYFGKDSRAFICSCLNIICLLALYAIGTYPNVIRSIDQPDVLSLTIYNSASSV 271 Query: 334 LTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLR 371 TL I+ +I LI +P+V+ YT YY G++ + Sbjct: 272 KTLEILFLIALIGVPLVIAYTTAIYYIFRGKVKIDPHS 309 >UniRef50_Q6ABD4 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Propionibacterium acnes RepID=Q6ABD4_PROAC Length = 357 Score = 260 bits (665), Expect = 5e-68, Method: Composition-based stats. Identities = 108/371 (29%), Positives = 178/371 (47%), Gaps = 34/371 (9%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 + L +W++LI V+ V F +GFD G+ LLP + R+D +RR+++N++G W+GN+VW Sbjct: 10 HSPLTIVWFVLITVLWVGFFFLEGFDFGVAMLLPFLGRDDKDRRLMVNTIGPTWDGNEVW 69 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L+ AGGA FAA+P YA FSG Y+ ++LVL L R +AF+YR K + WR +D Sbjct: 70 LLTAGGATFAAFPGWYATMFSGLYLPLLLVLLGLIVRGVAFEYRSKNPSSSWRNAFDWMA 129 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFA----FTPQLRVEYLGSFWQLLTPFPLLCGLLSLGM 179 IGS +P +V G+ F N + G+ SFW L TPF L+ G+L + + Sbjct: 130 TIGSFLPTLVLGVGFANFVRGLAVGPHSTPDGGTAPLVTTSFWGLFTPFALIGGILFVVL 189 Query: 180 VILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGP 239 G ++ LKT+G +H R++ + + + + L+ + Sbjct: 190 FCAHGANFVALKTMGDMHDRARKTSAKLGWIATVVALVWALMFNI--------------- 234 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299 ++ + WI LL + +GR G FL +L Sbjct: 235 -------------MYVTRDGRQVLTWIICLLVVVLLAAGSAVVAKGREGLAFLCTALGIA 281 Query: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359 +I ++ + + +W ++++ TL IM + +F+PIVL Y +WSY+ Sbjct: 282 LMIVACMFAMYGNL--GYRPSGIAFDMWIASATGRTLKIMTISACVFVPIVLAYQVWSYW 339 Query: 360 KMWGRMTTETL 370 R+T E + Sbjct: 340 VFRKRLTREAI 350 >UniRef50_C7M6E4 Cytochrome d ubiquinol oxidase, subunit II n=7 Tax=Bacteroidetes RepID=C7M6E4_CAPOD Length = 344 Score = 259 bits (663), Expect = 9e-68, Method: Composition-based stats. Identities = 101/362 (27%), Positives = 173/362 (47%), Gaps = 30/362 (8%) Query: 8 RFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILA 67 W+++IG ++ + I DGFD G G + ERR+ +N++G W+GN+ WL++ Sbjct: 10 PTWWFIIIGFLITGYAILDGFDFGAGAWHLFFDK-KKERRVALNAIGPVWDGNEAWLVIG 68 Query: 68 GGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGS 127 G +FA +P +YA FS +L L + FR +A + RGK RWR WD + S Sbjct: 69 GAGIFAGFPLMYAELFSAMNTPFMLFLTFIIFRAVAIEVRGKEDSDRWRNTWDTVYSVCS 128 Query: 128 LVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVW 187 +V PV+ G+ N+L G+P Q G+ + LTP+ LL G+++L + ++ GG++ Sbjct: 129 IVLPVLLGVVIANVLQGLPLDENFQYTG---GALFTFLTPYALLVGVMTLLLFMVHGGLY 185 Query: 188 LQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLV 247 L LKT G +H R + A L ++ F + Sbjct: 186 LLLKTHGDMHHRIEKRINYAYLGFLVVFTAVAIY-------------------------- 219 Query: 248 AVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGI 307 ++L N + L +FP L L + + F+ L + A + Sbjct: 220 SMLTPHLAENIANNTALKVFPALLLLSILSVAFFMKKKDYKKAFVGTILTIVFFMVVAAL 279 Query: 308 TLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTT 367 L P + +++ +S+T++++ +SQ +L IML I I P++LLYT ++Y WG++ Sbjct: 280 NLHPTFLRTTLETGNSITVYNAAASQKSLKIMLTITAIGAPLLLLYTYFAYKVFWGKVEI 339 Query: 368 ET 369 + Sbjct: 340 DE 341 >UniRef50_A0LSG2 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSG2_ACIC1 Length = 348 Score = 257 bits (657), Expect = 5e-67, Method: Composition-based stats. Identities = 109/364 (29%), Positives = 174/364 (47%), Gaps = 29/364 (7%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 + L W+ LIG++ ++ +GFD G+ + PLV++++ +RR+ +NSVG W+GN+ Sbjct: 1 MSFGVLDTTWFSLIGLLWAGYLFLEGFDFGVALITPLVSKDEIDRRMCLNSVGPFWDGNE 60 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWLI+AGGA FAA+P YA FSGFY+A+ L+L +L R ++F++R K WR+ WD Sbjct: 61 VWLIVAGGATFAAFPLWYARLFSGFYLALFLILLALIARGVSFEFRNKDHRPAWRRTWDW 120 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 +GSL+PP V+G+AF NL++G+P Y G LL P +L G ++ +V Sbjct: 121 ANFLGSLIPPAVWGVAFTNLVVGLPLD----SGGVYRGGLAGLLHPIAVLGGAATVALVS 176 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 G +L LKT + R++ + L + Sbjct: 177 FHGANFLLLKTSSGLAHRTRSVAVPLGVAATLL-------------------------TG 211 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 ++ VA+ G + + V + G + R R G F Sbjct: 212 AVVLAVALTRGKALPEALPGVVPLAMAVAGVAGVAAGTFLVARARDGAAFAATGGSLLLT 271 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 + +FP V P P S+T+ + S TL +M ++ IF P+VL Y W+Y+ Sbjct: 272 MGAVFARMFPTVFPDFHHPAHSVTIAAAASGHYTLVVMTIVAAIFTPLVLAYQGWTYWVF 331 Query: 362 WGRM 365 R+ Sbjct: 332 RRRL 335 >UniRef50_B0VC09 Ubiquinol oxidase subunit II, cyanide insensitive n=183 Tax=Proteobacteria RepID=B0VC09_ACIBY Length = 351 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 90/364 (24%), Positives = 163/364 (44%), Gaps = 36/364 (9%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW +IG+ ++++++ DGFD+GIG + P + +N ER +++N+V W+GN+ W++L Sbjct: 21 LSLIWVGIIGLGVLIYVVMDGFDLGIGIMFPFI-KNSQERDVMMNTVAPVWDGNETWMVL 79 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 G L+AA+P VY+ S Y+ +I ++ +L FR +AF++R K R + +WD + G Sbjct: 80 GGAGLYAAFPLVYSTVLSALYLPIIFMVIALIFRGVAFEFRFKAH--RTKHLWDLAFIWG 137 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S++ + GI G + G+ + G + LT F + G+ + M G Sbjct: 138 SVLTSFLQGIILGAYIQGI-----KTENGIFAGGPFDWLTAFSIFTGIGVVAMYATLGCG 192 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 WL LKT + R + + +++ F + PL Sbjct: 193 WLILKTEKGLQQRMYELMPKLIIALLIIFGAVSLY-------------------TPLTHP 233 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 + N P+L L + A + + F+ + F Sbjct: 234 EIADRWFSLPNLF---YFSPVPILVLLFVGLILSACKKQQDHKPFIYTLALVFLAFTGFV 290 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 I+L+P ++P SV T+W + + + LV LI +PI++ YT+ SY+ ++ Sbjct: 291 ISLWPNIIPPSV------TIWQAAAPHSSQMFALVGALILIPIIITYTIVSYWVFRDKVR 344 Query: 367 TETL 370 Sbjct: 345 VGDE 348 >UniRef50_A1R5L7 Cytochrome d ubiquinol oxidase, subunit II n=18 Tax=Actinobacteria (class) RepID=A1R5L7_ARTAT Length = 360 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 99/371 (26%), Positives = 163/371 (43%), Gaps = 37/371 (9%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 E L IW++ I V+ ++ +GFD+G+G L+ L ARN+ +RR+++N++G W+GN+VW Sbjct: 1 MELLPTIWFVAIAVLWTGYLFLEGFDLGVGMLMKLFARNNTDRRVLLNTIGPVWDGNEVW 60 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L+ A GA FAA+P YA+ FS Y+ ++ VL +L FR +AF+YRGK+ WR WD + Sbjct: 61 LLTAAGATFAAFPLWYASLFSTLYLPLLAVLAALIFRAVAFEYRGKVDSESWRNRWDWAI 120 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 IGS V G A G+P G + + LL G + ++ Sbjct: 121 AIGSFVAAFGIGAALALTTTGLPLDANGD----RSGGPMSWFSGYALLGGFGVVAFALVH 176 Query: 184 GGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPL 243 +L LKT G + R++ R + +L + Sbjct: 177 ALAFLALKTDGEVRYRARRWFVRLVPVAVLPMFGWMVAVQF------------------- 217 Query: 244 MKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIF 303 P W + +L G G F Sbjct: 218 --------------LSGKPWTWALVVAAVVAVVLAWRLARTGSEGRAFSALGAFIVCATA 263 Query: 304 TAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 + FP V+PS++ P +LT+ +++SS TL +M ++ + LP+V+ Y W+Y+ Sbjct: 264 SIFGAAFPVVIPSTIDPAFNLTISNASSSDYTLGLMSIVAAVGLPLVIAYQSWTYWVFRR 323 Query: 364 RMTTETLRRNE 374 R++ + Sbjct: 324 RVSAAHIPEAH 334 >UniRef50_Q46G86 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Methanosarcina RepID=Q46G86_METBF Length = 347 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 109/368 (29%), Positives = 189/368 (51%), Gaps = 29/368 (7%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 ++ L IW+ L VI V+ I D F +G G L+P +A + +R + +SVG W GN+ Sbjct: 5 LTHDMLAIIWFFLWCVIWGVYFIVDSFSLGAGLLVPFIATDKAQRMQIQSSVGPFWGGNE 64 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWLILA G FAA+P V++ F+ Y+ M+L+L L R ++ +Y K + +K+ Sbjct: 65 VWLILAAGGTFAAFPLVFSKMFTFLYLPMMLLLIGLIARGISIEYLHKDENPHIQKILMW 124 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 G GSL+ +V G+AF N G+ A Y+G+ L +P+ L+ G+L + M + Sbjct: 125 GWFAGSLLISLVLGVAFANFFKGLEIA----SGGVYIGTLIGLFSPYALIGGVLFVLMSV 180 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 G W+ +KT G I +++ K++AL+V++ L+ + ++GI+GF Sbjct: 181 TSGAFWINVKTEGAIAIKAGDLAKKSALIVLVLALVYLAYSFMGIEGFT----------- 229 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 N+ P L++ P L +L V + R F L V Sbjct: 230 --------------TNYSAMPALYLLPGLAVVTAVLAVFFAKKDRIFPAFCSNLLAFLFV 275 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 + + +++P+++ SSVS + ++++ SS +TLS+ML L+F+PI+++Y LW+Y Sbjct: 276 VESGLASIYPYMLKSSVSSEYGIDIFEAASSHMTLSVMLGGALVFVPIIIIYQLWAYTLF 335 Query: 362 WGRMTTET 369 ++ Sbjct: 336 REKIKETD 343 >UniRef50_Q5ZZ11 Cytochrome D ubiquinol oxidase subunit II, cyanide insensitive n=5 Tax=Legionellales RepID=Q5ZZ11_LEGPH Length = 329 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 91/362 (25%), Positives = 164/362 (45%), Gaps = 36/362 (9%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 L FI+ L+G I+++++I DGFD+GIG L P + ++ ER ++NS+ W+GN+ WL+ Sbjct: 1 MLPFIFATLLGFIVLMYVILDGFDLGIGILFPFTS-SESERDKMMNSIAPVWDGNETWLV 59 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 G L+ A+P+VY Y+ ++L+L +L FR ++F++R K R + +W+ I Sbjct: 60 FGGAMLYGAFPQVYGLLLPILYMPIMLMLIALIFRGVSFEFRFKA--KRSKTLWNWSFSI 117 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 S+ + G+ G + G + + LTPF L G+ + L G Sbjct: 118 SSVAATFLQGVILGAFVQGFSINESSMTINDP-----DWLTPFSLCTGIALVCGYALLGS 172 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 W+ +K+ G + + + +LV L W Sbjct: 173 TWMIIKSTGRLQRKMVHYARGLLVLVSFFLLFVSIWT----------------------P 210 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 L + +F +L PL+ L + G F+ + ++ Sbjct: 211 LHSEEVFHRWYSFPNVLLLSPLPLIALMAIYLVWQNLNSGSEYKPFIYSIIIFLCSYIGI 270 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 I+++P+++P +TLW++ + TL +L+ V I LPI+L YTL++YY G+ Sbjct: 271 AISVYPYLIP------HQVTLWEAAAPDSTLVFILIGVAIMLPILLAYTLYAYYLFRGKS 324 Query: 366 TT 367 + Sbjct: 325 SE 326 >UniRef50_A8GFS1 Cytochrome d ubiquinol oxidase, subunit II n=19 Tax=Proteobacteria RepID=A8GFS1_SERP5 Length = 335 Score = 251 bits (641), Expect = 4e-65, Method: Composition-based stats. Identities = 104/362 (28%), Positives = 163/362 (45%), Gaps = 35/362 (9%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW+++I +++++ DGFD+GIG L P V ++ +R +++N+V W+GN+ WL+L Sbjct: 5 LPLIWFVIIVFSTMMYVVMDGFDLGIGILFPWV-KDSGDRDVMMNTVAPVWDGNETWLVL 63 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 G ALF A+P YA + + L+L L FR +AF++R K A A R +WD + G Sbjct: 64 GGAALFGAFPLAYAVILDALAIPLTLMLFGLIFRGVAFEFRFK-ATAEKRHIWDKAFIWG 122 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S+ G+ G ++ G P Y G LTPF L CGL + L G Sbjct: 123 SVFATFSQGVVVGAIIKGFPVN-----GRTYAGGALDWLTPFALFCGLGLVVTYALLGCT 177 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 WL +KT G + R ++L + W + L Sbjct: 178 WLVMKTAGDLQARMYRLAMPLLATLLLVLAVVSIWTPIAHPEIANRWFSLPNLFVLLPVP 237 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 + VL AW + FL+ L+ F + G Sbjct: 238 ILVLLSAW----------------------GIGHGVKNAAHYSPFLLTLLLVFLGLSGLG 275 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 I+++P ++P S+TLW + + +L MLV L +PI+L+YT WSYY G+++ Sbjct: 276 ISIWPLLIPP------SITLWQAAAPPQSLGFMLVGALFIIPIILVYTFWSYYVFRGKVS 329 Query: 367 TE 368 E Sbjct: 330 HE 331 >UniRef50_Q4KA99 Cytochrome d ubiquinol oxidase, subunit II n=66 Tax=Proteobacteria RepID=Q4KA99_PSEF5 Length = 338 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 99/363 (27%), Positives = 170/363 (46%), Gaps = 35/363 (9%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW ++I +++++I DGFD+G+G L PL+ + ER +++N+V W+GN+ WLIL Sbjct: 8 LSLIWGVIIAFGVMMYVIMDGFDLGLGILFPLIP-DARERDVMMNTVAPVWDGNETWLIL 66 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 G AL+ A+P Y+ Y+ +I +L L FR +AF++R K A R +WD + G Sbjct: 67 GGAALYGAFPLAYSVILEALYLPLIFMLAGLIFRGVAFEFRFK-ASPEKRHIWDWAFIGG 125 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 SL+ + GI G + G+P + ++ G L PFPL CGL + L G Sbjct: 126 SLLATLCQGIVIGTYISGIPV-----VDRQFAGGTLDWLAPFPLFCGLGLIVAYALLGST 180 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 WL +KT G++ R + T+ A + + W + L Sbjct: 181 WLLVKTEGMLEARMRHYTRPLAFALTAVVAVLCVWTAL---------------------L 219 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 + W ++ + +LG + + + W F+ ++ F Sbjct: 220 HPEIANRWFSH-AHIVIFGALLVLGLAALFGLLGTLRQHHSHWPFVFTLVLVFLGYIGLA 278 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 +++P ++P S+S LW++ S + +L+ L LP++L+YT WSYY G++ Sbjct: 279 FSIWPNIVPPSIS------LWEAASPLSSQLFILIGTLFILPVILMYTCWSYYVFRGKVR 332 Query: 367 TET 369 Sbjct: 333 IGD 335 >UniRef50_B4U7P7 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Aquificales RepID=B4U7P7_HYDS0 Length = 346 Score = 250 bits (638), Expect = 8e-65, Method: Composition-based stats. Identities = 120/364 (32%), Positives = 197/364 (54%), Gaps = 30/364 (8%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 TL+ +W+L+ GV L+ + I+DGFD+G + + + + +R + NSV W+GN+VWLI Sbjct: 10 TLQGLWFLIAGVFLIGYSITDGFDLGSAFPMIFM-KKEYDRIALYNSVAPVWDGNEVWLI 68 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 GG LFAA+P VYAA+FSGFY+A++LVL +L R +AF+YR K WR +D + Sbjct: 69 AGGGLLFAAFPTVYAASFSGFYLAILLVLWALIGRAVAFEYRNKRESMAWRHTFDFIYWL 128 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 G+++P ++FG+A GN ++GVP Y G+F+ LL P PL GL+S M + G Sbjct: 129 GNVLPAILFGVAVGNAVVGVPIDQD----AVYHGTFFTLLRPVPLAMGLVSFFMFAMHGA 184 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 +L LKT G + ++ + + ++ +L Sbjct: 185 AYLLLKTEGSVFEMAKKYASISVIGYVISVILT-------------------------NA 219 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 L N+ P+L+ PL+ F +L V + G+ + L+ + Sbjct: 220 LAMQEAPFLYKNYFTYPILFAIPLMMFVGVVLYVSLLKSGKYEKMVYASGLVNAFTVLNV 279 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 FP +M SS++P SLT+++++SS LTL++ML++ +IF+PIV+ YT ++Y G++ Sbjct: 280 ACASFPVLMRSSINPDYSLTVFNASSSTLTLTVMLIVTVIFMPIVIYYTRYAYKVFSGKV 339 Query: 366 TTET 369 + E Sbjct: 340 SGEK 343 >UniRef50_Q1J2Z7 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Bacteria RepID=Q1J2Z7_DEIGD Length = 365 Score = 249 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 104/366 (28%), Positives = 166/366 (45%), Gaps = 34/366 (9%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L +W+ L G+I V+ DGFD G+G L P +ARN+ +RR +I +VG W N+VW+IL Sbjct: 3 LPTLWFALTGLIFTVYFFLDGFDFGVGVLQPFLARNEAQRRALIGTVGPFWAANEVWVIL 62 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 A G +FAA+P Y A +G Y L+L +L R +AF+YR ++ RWR WD I Sbjct: 63 AAGVIFAAFPVWYGALMTGLYPLFALILLALIGRGVAFEYRAEVDHVRWRVFWDVTSFIT 122 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 +L+P ++G+ N++ G+P + GS F +L GL +L + +L G Sbjct: 123 NLLPAFLWGVIMANMVRGLPIG----EGARFQGSPLDAFDLFSVLGGLSTLSLFVLHGAT 178 Query: 187 WLQLK--TVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLM 244 +L L+ T +H R++ A + L Y ++ F L Sbjct: 179 YLLLRLQTGSTLHARARRAALTWGAVATALVLAFVYVGFIHTGLFATLGLSE-------- 230 Query: 245 KLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFT 304 W+FP L +A+ R F L T Sbjct: 231 --------------------WLFPAGAAVNLALIWLALTLRRDRLAFAATGLTIVFSTAT 270 Query: 305 AGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 ++L+P +PS++ +LT+ + S TL ++ + L FLP+++ Y W+YY R Sbjct: 271 IFLSLYPAALPSTLGEGYTLTVQAAASEPYTLRLLSWVSLAFLPLIIGYQAWNYYVFRQR 330 Query: 365 MTTETL 370 + Sbjct: 331 VQERDE 336 >UniRef50_Q67RR5 Cytochrome D ubiquinol oxidase subunit II n=2 Tax=Bacteria RepID=Q67RR5_SYMTH Length = 342 Score = 249 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 115/362 (31%), Positives = 181/362 (50%), Gaps = 34/362 (9%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 +E L+ IW+ L G++ ++ DGFD+G G L + R D+E+ +I S+ W+GN+ Sbjct: 1 MSHELLQVIWFALWGLLWAIYFGLDGFDLGSGMLAGIF-REDEEQHHLIGSLAPIWDGNE 59 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIA-DARWRKMWD 120 VW+I AGG FAA+P++YA FS Y+ + ++L L FR +A ++ + DA W+K+W Sbjct: 60 VWVITAGGVTFAAFPKLYATMFSSLYLPLFIILFGLMFRAVAIEFYHHMDYDAGWQKIWG 119 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 L + S + +FG+AFGN+ G+ Y G+ LL P+ LL G+L + Sbjct: 120 WVLSVASFLVAFLFGVAFGNIFQGMLLDAQG-----YHGTVLSLLNPYGLLTGVLFVVAF 174 Query: 181 ILQGGVWLQLKTVGV-IHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGP 239 ++ G WL K ++ KR V++ +A WL Sbjct: 175 LMNGASWLAHKAPDDGFRAKADTFAKRMWPAVLV---VAAAWLVYTP------------- 218 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299 M N+++ P L++ P L +LT + + +GR LM SL Sbjct: 219 ----------FATRLMENYLKVPALFVVPALAVVLLVLTRVYLEKGRHALALLMGSLTVG 268 Query: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359 + A I LFP + PS + P SLT ++S+SS TL M +V++FLP VLLY +W+Y Sbjct: 269 ITVVAAVIGLFPNMFPSRIDPAYSLTAFNSSSSHYTLQFMFWVVVVFLPFVLLYQIWAYR 328 Query: 360 KM 361 Sbjct: 329 LF 330 >UniRef50_Q1ILJ8 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Acidobacteria RepID=Q1ILJ8_ACIBL Length = 349 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 96/372 (25%), Positives = 181/372 (48%), Gaps = 30/372 (8%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 + +W+ ++ V++ +++ DGFD+G G L VAR D+ERR++I S+G W+GN+VWL+ Sbjct: 1 MPTLWFCIVAVMVAAYVVLDGFDLGAGVLHLFVARTDEERRLIIRSIGPVWDGNEVWLLS 60 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGG L+ A+P++YA+ FSGFY+ +++VL L R + ++R I W+ +D + Sbjct: 61 AGGTLYFAFPQLYASGFSGFYLPLMMVLWLLMGRAIGIEFRTHIQSDVWKGFFDVVFSLS 120 Query: 127 SLVPPVVFGIAFGNLLLGVPFA-----FTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 SL+ + FG A GN++ GVP F P +G +L + +LCG+++ + Sbjct: 121 SLLLTIFFGAALGNVIRGVPLGEDRYFFEPLWTNWRVGPHPGILDWYTVLCGVIAAVTLT 180 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 G ++ KT G ++ R + + +L +++ Sbjct: 181 AHGAFYVASKTEGDLNQRCRKTAAVLWPVQVLLTIVSLIAT------------------- 221 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 + + N+ PV W+ P+L + +G F+ ++L + Sbjct: 222 ------TSIRPEVLANYKRWPVGWLIPILVVATLGGMFVFRKKGNDKAAFVSSALYITVM 275 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 + A L+P V+P+S +P SLT+ ++++ L+I LV I + + Y ++ Y Sbjct: 276 LVGAVFALYPTVLPASTNPDWSLTIQNASAPTYGLTIGLVWWSIGMVFTVGYFVFVYRMF 335 Query: 362 WGRMTTETLRRN 373 G+++ + Sbjct: 336 RGKVSLSDGSDH 347 >UniRef50_Q0YUS4 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YUS4_9CHLB Length = 331 Score = 247 bits (630), Expect = 6e-64, Method: Composition-based stats. Identities = 114/366 (31%), Positives = 187/366 (51%), Gaps = 38/366 (10%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW++ I ++ + + +GFD G G LLP + +D ERR VIN++G W GN+VWL+ Sbjct: 3 LHSIWFIFIALLFTILFLLEGFDFGTGILLPFMGSDDRERRSVINTIGPFWLGNEVWLVS 62 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGGA+FAA+P YA+ SGFY +L+L SL FR AF++R K ++ +++ + + G Sbjct: 63 AGGAMFAAFPGWYASLLSGFYPLFLLMLLSLIFRGAAFEFRSKFSNPALKRVSEWIIFGG 122 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 SLVP +++G+ N + GVP + Y G+ +LL PF L G S L G + Sbjct: 123 SLVPALLWGVILSNFISGVPVDAS----GNYTGALSKLLNPFALAGGAASALTFTLYGAL 178 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 +L LKT G + R+ K+ L ++ + + Sbjct: 179 FLSLKTSGRVKERAIGIAKKLWAPATLSLMVCIACS---------------------VTV 217 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 ++ PG I PLL ++ + + R G F+M +L Sbjct: 218 TSIKPG-------------ILPLLSLLSLAPVIVLLQKNRSGVAFIMTALAIIFTALAIF 264 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 L+P V+ S+++P SLT+++++SS+ TLSI+ V+ LIF P+V++ SY+ R++ Sbjct: 265 TNLYPRVLVSNLNPAWSLTIYNASSSEYTLSILTVVALIFTPLVIIAQCLSYWVFRERVS 324 Query: 367 TETLRR 372 T++ Sbjct: 325 TDSELE 330 >UniRef50_C8WK01 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Coriobacteriaceae RepID=C8WK01_EGGLE Length = 345 Score = 246 bits (629), Expect = 8e-64, Method: Composition-based stats. Identities = 118/372 (31%), Positives = 182/372 (48%), Gaps = 29/372 (7%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 + + +W+LLI V++ + + DGFD+G G L P VA+ D+E+ +V S+G W+GN+ Sbjct: 1 MEITFFQGLWFLLIFVLIAGYFVLDGFDLGAGVLYPFVAKGDEEKAVVRTSIGPVWDGNE 60 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWL+ AGGALFAA+P YA FSGFY+A++LVL L R ++ +YRG D +W K+WD Sbjct: 61 VWLLTAGGALFAAFPAAYATTFSGFYLAVMLVLFGLIVRAVSLEYRG--IDHKWAKVWDG 118 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 +GSL+P ++ G+A GN+ G+P + L+TPF LLCGLL L M + Sbjct: 119 CFFVGSLLPALLLGVAVGNIYAGIPMSANGDYTGI---PLLGLITPFTLLCGLLGLSMFL 175 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 QG WL LK L+++ A R L ++ L + + + Sbjct: 176 AQGASWLALKAPKPSDLQARAAKLRFPLQIVSLVLFVAVTAYALL--------GIQPAMD 227 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 PL+ V L + L A + F+ S + Sbjct: 228 PLLGAVRWL---------------LAALFVVAIVASVFFAKSKDCDLGAFIAQSGAAALL 272 Query: 302 IFTAGITLFPFVMPSSVSP-ISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 + ++FP + +S ++T + SS+LTL M +I + LP+VL+Y + Y Sbjct: 273 VLLLAASMFPNFVVASADSVGPAITAMSAASSELTLMWMTIITCVGLPLVLVYHVIIYRT 332 Query: 361 MWGRMTTETLRR 372 GR+ E L Sbjct: 333 FRGRVKEEDLAH 344 >UniRef50_D1RLM4 Cytochrome D ubiquinol oxidase subunit II n=1 Tax=Legionella longbeachae D-4968 RepID=D1RLM4_LEGLO Length = 331 Score = 246 bits (629), Expect = 9e-64, Method: Composition-based stats. Identities = 87/365 (23%), Positives = 165/365 (45%), Gaps = 38/365 (10%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 L I+ +L+ I+++++I DGFD+GIG L P + ++ ER ++NS+ W+GN+ WL+ Sbjct: 1 MLPLIFAVLLAFIVMMYVILDGFDLGIGILFPFTS-SEKERDKMMNSIAPVWDGNETWLV 59 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 G L+ +P+VY A Y+ ++ +L +L FR ++F++R K + + +W+ I Sbjct: 60 FGGAILYGGFPQVYGALLPVLYIPIMFMLIALIFRGVSFEFRFKAD--KSKPVWNWLFAI 117 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GS+ G+ G + G + LTPF L G+ + L G Sbjct: 118 GSIAAAFFQGVILGCFVQGFSMNPQTMAITQ-----SSWLTPFSLFTGVALVSGYGLLGA 172 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 W+ +K+ G + + + LL+ + F L +W + + + Sbjct: 173 TWMIIKSSGKLQAKMVHYAR--GLLISVSFFLVFVSIWTPLHSEEVFNRWYQ-------- 222 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVM--AIYRGRPGWGFLMASLMQFGVIF 303 F L PL+ F LT ++ F+ + ++ Sbjct: 223 ------------FPNFLWLSPLPLITAFAIYLTWRNLSLNSNNERKPFIYSIIIFLCSYI 270 Query: 304 TAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 ++++P+++P +T+W++ + TL+ +LV V I LPI+L YTL++Y+ G Sbjct: 271 GIAVSVYPYLIP------HQITIWEAAAPSSTLTFILVGVAIMLPILLAYTLYAYFLFRG 324 Query: 364 RMTTE 368 + Sbjct: 325 KTEEH 329 >UniRef50_C7MDJ2 Cytochrome d oxidase cyd, subunit II n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MDJ2_BRAFD Length = 357 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 108/378 (28%), Positives = 175/378 (46%), Gaps = 37/378 (9%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGC-LLPLVARNDDERRIVINSVGAHWEG 59 M D L +W+ LI + + + +GFD G+ + R R V+ ++G W+G Sbjct: 1 MLDPTVLETLWFFLIAFFFLGYFVLEGFDFGVQMNVATFWRRGTGTRGTVLRTIGPVWDG 60 Query: 60 NQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMW 119 N+VW+I G LFAA+P YA FSGFY+A++L+L L R AF +R K+ RWR W Sbjct: 61 NEVWVITGGALLFAAFPEWYATLFSGFYLALLLLLVVLIVRVCAFKWREKVDSERWRNGW 120 Query: 120 DAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGM 179 D VIG P +++G+AF N++ GV + + +LL PF LL GL+ + + Sbjct: 121 DVVHVIGGFAPALLWGVAFSNIVAGVSIDENRWVTT----TLLELLNPFALLGGLVFVLL 176 Query: 180 VILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGP 239 L G ++L LK G + + A ++ W + L Sbjct: 177 FWLHGTLYLALKVEGRLREDANRLAGILAWPALVAGAAFLLWYQLAHSHSALTLIPLAVA 236 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299 + L+ +V + +GR G F + Sbjct: 237 ALGLLAVVPL--------------------------------NRQGREGLAFGATTAAIT 264 Query: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359 G + T LFP+V+P++ +SLT+ +++S+ TL++MLV + +F+P+VL YT+W+Y Sbjct: 265 GAVITLFGGLFPYVLPATNDAANSLTVANASSTGHTLTVMLVALCVFMPVVLAYTVWTYR 324 Query: 360 KMWGRMTTETLRRNENEL 377 R++ E EL Sbjct: 325 VFRHRVSDEDSPAPGAEL 342 >UniRef50_Q255C4 Cytochrome D oxidase subunit II n=14 Tax=Chlamydiaceae RepID=Q255C4_CHLFF Length = 353 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 100/362 (27%), Positives = 173/362 (47%), Gaps = 20/362 (5%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 L W+ ++ V + + + DGFD+G+ + ++R D+ERR+++NS+G W+GN+VWL Sbjct: 7 SMLPIAWYAILVVAVFAYSLGDGFDLGLSTIY-FISRADEERRVLLNSIGPVWDGNEVWL 65 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 I+ G LFA +P Y A S FY+ + ++ FR + ++R K +W+ WD Sbjct: 66 IIIFGGLFAGFPSAYGALLSIFYMPIWTLVLLYIFRGCSLEFRSKAESTKWKAFWDVVFC 125 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQG 184 + + G GN++LG+P + T Q S+ P+ LCG L + + G Sbjct: 126 VSGIAISFFLGAIVGNMILGLPMSPTTQYSSL---SWLLFFRPYAFLCGALVVSAFSIHG 182 Query: 185 GVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLM 244 + +KT G +H R ++ +LL I +++ G S P+ Sbjct: 183 ATFTLMKTSGELHHRIVKRFSYVLSAFLVIYLLL-------IGTTLVMIPQTKGYSFPIG 235 Query: 245 KLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFT 304 + V PVL + + C L T I + R G FL +S +I + Sbjct: 236 SFIGV---------PTYPVLILLLAMTLACSLATKTCISKQRYGCAFLYSSCNLLLLILS 286 Query: 305 AGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 + +FP ++ S+VS S T++++ +S TL +LVIVL+ LP ++ Y ++ Y G+ Sbjct: 287 SVALVFPNLLFSTVSSEYSYTIYNAAASMKTLQSLLVIVLVGLPFIIAYGVYIYRVFKGK 346 Query: 365 MT 366 Sbjct: 347 TD 348 >UniRef50_B2SK06 Cytochrome D ubiquinol oxidase, subunit II n=5 Tax=Gammaproteobacteria RepID=B2SK06_XANOP Length = 339 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 90/370 (24%), Positives = 171/370 (46%), Gaps = 36/370 (9%) Query: 1 MFDYET-LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEG 59 M D T L W+ +IG ++++++ DGF +GIG L P +++ + +++N+ W+G Sbjct: 1 MMDMATVLTVAWFAVIGFGVLMYVVLDGFVLGIGILAPF-RKDEAQLDLMMNTAAPIWDG 59 Query: 60 NQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMW 119 N+ WL+L G L AA+P+ Y S Y+ ++L++ +L FR +AF++R K R R++W Sbjct: 60 NETWLVLCGAGLLAAFPKAYGVILSALYLPVLLMVMALVFRGVAFEFRFKAH--RSRRLW 117 Query: 120 DAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGM 179 +GS++ G+ G L+ G+P Y+G W +PF +L G + Sbjct: 118 SHAFAVGSILATFAQGVILGALVQGLPIKHD-----RYVGGIWGWFSPFAMLTGAALVFG 172 Query: 180 VILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGP 239 L G WL LKT G + ++ ++ + V+ L WL Sbjct: 173 YALLGSTWLILKTEGHVQQLARQLSRPLTISVLTFIGLVSAWL----------------- 215 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299 L + + W + ++ + L+ L FL+A + Sbjct: 216 ----PSLQSHVMERWFSGAHYLWLMPVPLLVAIVGFALWRATDAERSEALPFLLAMGLFV 271 Query: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359 + ++P+++P T+W + + + ++V +++ LP++L YT+WSY+ Sbjct: 272 LGFLGLVLGMWPYLVPPVY------TIWQAAAPPSSQLFVMVGLVMLLPLILGYTVWSYH 325 Query: 360 KMWGRMTTET 369 G++TT+ Sbjct: 326 VFRGKVTTDN 335 >UniRef50_C2KPN0 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Mobiluncus RepID=C2KPN0_9ACTO Length = 387 Score = 244 bits (623), Expect = 5e-63, Method: Composition-based stats. Identities = 107/395 (27%), Positives = 184/395 (46%), Gaps = 62/395 (15%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L+ +W++L+ V+ ++I +G+ +G G L+ ++ ++D ER ++ S+G HW+GN+VWL+ Sbjct: 5 LQILWFILVAVLWAGYLILEGYGLGTGMLMRIIGKSDTERGQIVRSIGPHWDGNEVWLLT 64 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGGA FA+ P YA FSG Y+A+ L+L L R A ++R K+ WR WD G I Sbjct: 65 AGGATFASSPEWYAVMFSGMYLALFLILVCLIVRISAIEWRNKVDSESWRNKWDWGHTIS 124 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLR---------------------------VEYLG 159 + + P++ G AFGNL+ G+ A + + L Sbjct: 125 AWLVPILLGTAFGNLVSGMMIAVVDPKQPFTPIPPDEIDPSKHVHNLIGLGDMPLGQLLS 184 Query: 160 SFWQLLTP----FPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCF 215 F+ + +P F LL GL+ + + QG ++L LKT + RS+ + AL+ Sbjct: 185 LFYNVPSPINGVFNLLGGLVIASLCLTQGALFLSLKTTDEVRERSEALAPKLALVSTALT 244 Query: 216 LLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCP 275 + W G + IF ++ C Sbjct: 245 AVFAIWGTFAYMGAGFI------------------------------FALIFLVIAAVCL 274 Query: 276 LLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPI-SSLTLWDSTSSQL 334 ++ + ++ G F+ S + +FP+VM SS++ SLT+W+S+++ Sbjct: 275 IVGLFFAFQRSIGKAFIFNSAGVAFAVAWVFAMIFPYVMKSSINTEKYSLTIWESSATPG 334 Query: 335 TLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTET 369 T +M + +I +P+VL YT+WS Y R++ T Sbjct: 335 TQIVMTIAAVILVPVVLGYTIWSVYMFRSRISPGT 369 >UniRef50_B1MXQ3 Cytochrome d ubiquinol oxidase, subunit II n=30 Tax=Lactobacillales RepID=B1MXQ3_LEUCK Length = 337 Score = 244 bits (622), Expect = 6e-63, Method: Composition-based stats. Identities = 95/369 (25%), Positives = 176/369 (47%), Gaps = 32/369 (8%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 L IW++LIGV+ F +GFD GIG L AR+ +R + ++G +W+ N+VW Sbjct: 1 MTILEIIWFVLIGVLWAGFFFLEGFDFGIGMQFALNARDQKDREALYQAIGPNWDANEVW 60 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L+ AGGA FAA+P YA+ FSGFY+ + +VL SL +R ++F++R + + ++W+ + Sbjct: 61 LVTAGGATFAAFPAWYASLFSGFYLMLFIVLLSLIYRGVSFEFREHMPTVQGTQLWERLI 120 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 + S + P G+ F ++ G+P R F+ +TPF L+ G+ M + Sbjct: 121 ALTSFLVPFFLGMIFTAMVSGMPID----ARGNLSAGFFDYVTPFSLVGGVAVSLMSYVH 176 Query: 184 GGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPL 243 G + +L+ G + R+ + +++ L L+ D Sbjct: 177 GLNYTRLRIDGKLRTRALKQLEYLYPILLAGEALFAVLLFFYTDFIQT------------ 224 Query: 244 MKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIF 303 L I ++ + ++AI + F+++ L V+ Sbjct: 225 ---------------QTVWTLSILVVIVLTTVIGWLLAIKQKMEKLPFVLSGLTLVEVVV 269 Query: 304 TAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 + LFP VM ++ +P+ +L + +++SS TL +M ++V+ LP+ L Y +WS++ Sbjct: 270 LLFVGLFPRVMVAN-NPLHTLNIMNTSSSTYTLKVMTIVVVTALPVTLGYQIWSFWVFRK 328 Query: 364 RMTTETLRR 372 R+ + + Sbjct: 329 RIVSHKVVE 337 >UniRef50_B1VE35 Cytochrome d ubiquinol oxidase subunit 2 n=4 Tax=Corynebacterium RepID=B1VE35_CORU7 Length = 321 Score = 244 bits (622), Expect = 6e-63, Method: Composition-based stats. Identities = 105/365 (28%), Positives = 169/365 (46%), Gaps = 49/365 (13%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L +W+ LI + + + +GF G+G LLP + R++ R +I ++G W+GN+VWLI Sbjct: 5 LPTLWFGLIVFLFAGYFMLEGFGFGVGLLLPFLGRDEARRSAMIRTIGPVWDGNEVWLIT 64 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGGALFAA+P YA FSGFY+ + L+L L R + ++R K+ A+WR DAG++ G Sbjct: 65 AGGALFAAFPAWYADMFSGFYLPLFLILLGLIVRIVGLEWRTKVNSAKWRAWCDAGIITG 124 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S + P+V+G+A NL+ G+P E + L P+ L+ + + L G Sbjct: 125 SWISPIVWGVAVANLVSGIP---------ENAAHVYPLFHPYALVGAAALVCVFALHGLT 175 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 +++LKT GV+ +Q A+ ++ + W +G Sbjct: 176 FIRLKTAGVLRKEAQRFITPLAIGSIVFGGVFALWTQLG--------------------- 214 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 W+ +L L +V A R GW F +L V+ A Sbjct: 215 ------------YGKAWTWVPLVLAVVGLLGSVAATVAQRDGWAFTATALAIVSVVVLAF 262 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 +FP + + L +W + S+ TL IM +I P VLLY ++Y+ R+ Sbjct: 263 GAMFPMLW-------TDLDIWQAASNPYTLKIMTWAGVIVTPFVLLYQGYTYWIFRRRIV 315 Query: 367 TETLR 371 E + Sbjct: 316 AEPVH 320 >UniRef50_B4RAL0 Cytochrome oxidase, subunit II n=2 Tax=Proteobacteria RepID=B4RAL0_PHEZH Length = 341 Score = 243 bits (620), Expect = 9e-63, Method: Composition-based stats. Identities = 93/363 (25%), Positives = 154/363 (42%), Gaps = 29/363 (7%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW +I + ++++++ DGFD+G+G L P + ER +++SV W+GN+ WL+L Sbjct: 5 LPLIWAGIIAIAVLMYVLLDGFDLGVGILFPFAG-SPAERDTMMDSVAPVWDGNETWLVL 63 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GG LFAA+P Y A Y+ ++++L +L R +AF++R R ++ W A G Sbjct: 64 GGGGLFAAFPAAYGALMPALYIPILIMLMALILRGVAFEFRL-RGRRRGKRFWTAAFAGG 122 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S+ + G G + GV ++ G + LTP+ LL L L G Sbjct: 123 SIAATLAQGFVLGGFIQGVTLR-----EGQFAGGAFDWLTPYTLLVAAGLLAGYALLGAT 177 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 WL KT +H R++ + + + +G Sbjct: 178 WLIWKTEDELHGRARRWAWLSTAATAALLAVVSVATLLVHPRIAERWGFQDGGI------ 231 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 N E L PL+G ++ + R G FL A + Sbjct: 232 ----------NTGEILPLLAIPLVGLAGLIMVAAGLRRRSHGLPFLGAFAIFLSGYLGLA 281 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 + FP ++P +T + S+ L +MLV V I LP +L YT W Y+ G+++ Sbjct: 282 VGFFPNIVP------YDMTFRQAASADNALGLMLVGVAILLPFILGYTAWVYWVFRGKVS 335 Query: 367 TET 369 + Sbjct: 336 ADA 338 >UniRef50_C2KAY6 Cytochrome d ubiquinol oxidase, subunit II n=5 Tax=Lactobacillales RepID=C2KAY6_9LACO Length = 338 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 100/369 (27%), Positives = 175/369 (47%), Gaps = 33/369 (8%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 L+ +W++LIGV+ F DGFD G+G + +A N+ ER V+ ++G W+GN+VW Sbjct: 1 MSFLQILWFILIGVLFSGFFFLDGFDFGVGMAVKTLAHNEPERDQVVRTIGPVWDGNEVW 60 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 LI AGGA+FA++P YA FSG+Y+ ++L+L L R ++F++R K A + +WD + Sbjct: 61 LITAGGAMFASFPYWYATLFSGYYLILLLILVGLIIRGVSFEFRAKCA-PYQKHIWDNAM 119 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 IGS++ +FG+ F +++ G+P + SF+ F ++ G+ + L Sbjct: 120 AIGSVIATFLFGVMFISMIKGMPID----AKGNISASFFDYFNWFSIVGGIALTLLCYLH 175 Query: 184 GGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPL 243 G ++ +KT GVI R+Q + ++ + ++ L D + Sbjct: 176 GLNYITIKTKGVISDRAQNYAQALYWVLYVGEVVFALLLIFQTDFMRV------------ 223 Query: 244 MKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIF 303 I +L + +A + + G + L ++ Sbjct: 224 ----------------HPIATLICLVLIVGFSVAAHVATFINKQGMALACSGLTLISLVA 267 Query: 304 TAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 LFP VM SS+S L + ++SS TL +M V I +P +L YT+W+Y+ Sbjct: 268 LIFCGLFPRVMISSISSKYDLLIHSASSSNYTLIVMTVATCILVPCILAYTIWAYWIFRK 327 Query: 364 RMTTETLRR 372 R++ + Sbjct: 328 RISMPRIGE 336 >UniRef50_B0UGT2 Cytochrome d ubiquinol oxidase, subunit II n=17 Tax=Proteobacteria RepID=B0UGT2_METS4 Length = 347 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 91/363 (25%), Positives = 163/363 (44%), Gaps = 36/363 (9%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 L +W +++GV + ++++ DGFD+GIG + A ND+ R ++ SV W+GN+ WLI Sbjct: 14 WLPLLWAVILGVAITMYVVVDGFDLGIGIMFTR-AENDNWRDRMMFSVAPIWDGNETWLI 72 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 L G LF + YA Y+ M+++L +L FR +AF++R K + +++WD Sbjct: 73 LGGAGLFCVFSVAYAILMPALYIPMLIMLIALVFRGIAFEFRFKADTS--KRIWDYAFHY 130 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GSL+ GI G + G ++ G W LTPF L G+ + L G Sbjct: 131 GSLLATFAQGIVLGAFVQGFEVG-----GRQFAGGTWDWLTPFSLATGVGLVCGYGLLGA 185 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 W +KT G + + ++ +++ + ++ + W+ Sbjct: 186 TWCVMKTTGALEIWARRKSEQFLVATIVMMAIVSAWV----------------------P 223 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 + A ++ L PLL F + ++ G FL++ +M Sbjct: 224 FLGRQIEARWFSWPSILALVPVPLLTAFVAYMIYRSVNDGHHTAPFLLSIVMFLLGFLGL 283 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 I+LFP+++P S+T+W + ++ + L+ LPI YT ++YY G++ Sbjct: 284 VISLFPYIVPP------SITIWQAANTVDSQMFALIGYAFALPITFAYTAYAYYVFRGKV 337 Query: 366 TTE 368 E Sbjct: 338 AKE 340 >UniRef50_A2RMA6 Cytochrome d ubiquinol oxidase, subunit II n=5 Tax=Lactobacillales RepID=A2RMA6_LACLM Length = 331 Score = 240 bits (613), Expect = 7e-62, Method: Composition-based stats. Identities = 93/361 (25%), Positives = 163/361 (45%), Gaps = 33/361 (9%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L+ W++++GV+ F +GFD G+G VA++ E I S+G W+ N+VWL+ Sbjct: 4 LQLFWFIIVGVLFSGFFFLEGFDYGVGMSAITVAKDKREVEQAIGSIGPVWDLNEVWLLT 63 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGGA+FA++P YA+ FSGFY+ + L+L L FR + F++R + + +W L + Sbjct: 64 AGGAMFASFPYWYASLFSGFYLILFLILVGLIFRGVTFEFRHHSHTEKGKMIWTKVLGVA 123 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S P +FG+ F ++ GVP + +F + ++ G+ + + L G Sbjct: 124 SFAIPFLFGLMFTGMIQGVPMDAKGNV----TATFTTYVNFLSVVGGVAVMLLAWLHGLN 179 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 +L LKT G + R+ ++ ++ L V D F ++ L Sbjct: 180 YLALKTEGDLRKRAAKIANFLYFVLYAGEVVFAILLAVFTDFFEKHFIGTLLLLALIVIL 239 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 V +++ G+ FL + L ++ Sbjct: 240 TLV----------------------------AHLSVRSGKEMSAFLASGLTFIALVALIF 271 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 +FP VM ++ +P S+ + +++S+ TL M +I L LP VL+Y W+YY R+ Sbjct: 272 QGIFPRVMIAT-NPAHSILIKNASSTGYTLKTMTIITLAILPFVLIYMGWTYYIFRKRIQ 330 Query: 367 T 367 Sbjct: 331 K 331 >UniRef50_A6W2X5 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Marinomonas RepID=A6W2X5_MARMS Length = 337 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 91/366 (24%), Positives = 154/366 (42%), Gaps = 44/366 (12%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L ++L++G + ++++ DGFD+GIG L P ++ ER ++ S+ W+GN+ WL+ Sbjct: 4 LALFYFLVLGFAIFMYVLLDGFDLGIGILYPWFNQD-GERDHLMRSISHVWDGNETWLVF 62 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 G LFAA+P YA S FY+ ++L+L +L FR +AF+YR K + R WD G Sbjct: 63 GGVVLFAAFPAAYAGITSTFYLPIMLMLFALIFRGVAFEYRFKSDTS--RPYWDFAFSAG 120 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S + G+ G+++ GVP S LTPF +L G + L Sbjct: 121 SAIAAFCQGMLLGSIVQGVPVGVDSL-------SSLHWLTPFSILTGFAVMAGYALLAAC 173 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 +L +K+ G I + K+ L+ +L ++ W Sbjct: 174 YLFMKSRGRIQKHAAKLGKQLLLITILAMVIVSVWTIASQVEIRQRWFSGVNFL------ 227 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYR------GRPGWGFLMASLMQFG 300 L P++ +L + G F A+ + Sbjct: 228 ----------------WLSPLPIITLVVAVLAWRDLNSHATGTVHHEGRPFWYAATLFLL 271 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 + LFP+++P LT ++ S +L +L + IF+P++ YTLW Y Sbjct: 272 GFAGLVVGLFPYLIP------RQLTFMEAASPDSSLLFLLPGICIFVPLICTYTLWGYRV 325 Query: 361 MWGRMT 366 G++ Sbjct: 326 FSGKVE 331 >UniRef50_D0XNI3 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XNI3_9CAUL Length = 345 Score = 237 bits (605), Expect = 5e-61, Method: Composition-based stats. Identities = 96/363 (26%), Positives = 161/363 (44%), Gaps = 26/363 (7%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L+ IW LI V +++++ DGFD+GIG L P A++ +ER +++N++ W+GN+ WL+L Sbjct: 5 LQLIWAGLIAVAVLLYVTLDGFDLGIGILFPF-AKSKEERDVMMNTIAPVWDGNETWLVL 63 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GG L AA+P Y+ Y+ ++L+L L R +AF++R + + R RK W G Sbjct: 64 GGGGLLAAFPLAYSVLMPALYLPILLMLAGLILRGVAFEFRFRARN-RGRKFWTQMFSGG 122 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S++ V G+ G + GV + G + TP+ LL + L GG Sbjct: 123 SILTAVAQGLVLGGFIQGVTVRED-----RFAGGPFDWFTPYTLLVAAGLVAGYALLGGA 177 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 WL +KT +H ++ T ++++V + + + G L Sbjct: 178 WLMMKTKDNLHGDAKRWTSISSVVVTVLLVAVSVATLLIHPRVAARWGFDLGDGFALDAS 237 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 V + LLG L + RG W F+ A L+ Sbjct: 238 VLMPLLPIP-------------LLGLAGLALVWVMSRRGSHRWPFVGAILVFLSGYLGLA 284 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 + P+V+P +L + + L +MLV + LP++L YT W Y+ G++ Sbjct: 285 VGFAPYVVP------YALDFRQAAAPDNALGLMLVGTVAILPLILAYTGWVYWVFRGKID 338 Query: 367 TET 369 E Sbjct: 339 EEA 341 >UniRef50_C8XGP9 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGP9_NAKMY Length = 338 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 121/363 (33%), Positives = 187/363 (51%), Gaps = 35/363 (9%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 TL +W++++ F + +GFD G+G L +V R D ERR+ INS+G W+GN+VWLI Sbjct: 2 TLPTVWFVIVAFFWTGFFVLEGFDFGVGALHKVVGRTDTERRVAINSIGPFWDGNEVWLI 61 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 +AG ++FAA+P YA+ FS Y+A+ L+L +L R ++F++RGK A WR W L + Sbjct: 62 VAGASMFAAFPNWYASWFSALYLALWLLLAALIVRGVSFEFRGKFAAPAWRHTWGWTLTV 121 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GS++ P++ GI G+LL G+P + GSF LLTPF LL GL L + +L G Sbjct: 122 GSVLAPLLIGIGLGDLLAGLPIDAAGD----FTGSFLDLLTPFGLLLGLTLLTLSLLHGA 177 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 +L L+T G + RS+ +R AL + L+A W+ Sbjct: 178 AFLTLRTTGPVLERSRALVRRLALPAVALVLVAAVWM----------------------- 214 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 +V PG W V P + + P A F+ ++ ++ Sbjct: 215 VVLAAPGGWGYLAVAVPAVAVIAAAVTALPGRAGPAT--------FVATAISIGALVAAL 266 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 + L+P ++ S+ P SLT+ +S SS +L +M V + P+VLLY W+Y+ R+ Sbjct: 267 FVCLYPTLLVSTTDPAYSLTVTNSASSPYSLQVMTVAAAVLTPLVLLYQGWTYWVFRRRL 326 Query: 366 TTE 368 TE Sbjct: 327 RTE 329 >UniRef50_A0LMS2 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LMS2_SYNFM Length = 343 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 100/369 (27%), Positives = 173/369 (46%), Gaps = 33/369 (8%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW +IG L+ + ISDG D+G+G L L A ++ ER +++ S+G+ W NQ WL+L Sbjct: 8 LPEIWLAIIGFFLLYYAISDGADLGVGIL-SLAATDERERGLIMGSIGSIWHDNQTWLVL 66 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GG LF A+P Y S YV ++ ++ L FR ++F++R ++R +W +G Sbjct: 67 LGGMLFGAFPLFYGVLLSALYVPILCMIFGLVFRGVSFEFR---ENSRHPAVWSRCFGVG 123 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 SL+ + G A G LL G+ + GS PF L L L ++ G Sbjct: 124 SLIVTLSQGFALGGLLGGLDVR-----EGVFKGSVLGWANPFSCLVALGVLCGYVMLGSN 178 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 +L KT G I RS + A+L+ + +L + V Sbjct: 179 FLVFKTAGPIQARSYRTSFAASLMTLGISILVHLFTAAKYPQMV---------------- 222 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 + E+ + +FP+L FC ++ +++ R R L + + Sbjct: 223 ------RKLTTLPEAYYIAVFPVLAAFCFVMLFVSLRRKRELAPLLCNAGIILFSFIGLS 276 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 + ++P ++P+ VS S++T+ + +S+ TL ML + + LP++L+YT + + G++T Sbjct: 277 LGMYPDMIPNVVS--SAVTVHAAAASKDTLEFMLQVTSVLLPVILVYTGYKHRIFQGKVT 334 Query: 367 TETLRRNEN 375 TE + Sbjct: 335 TEAYSGKDE 343 >UniRef50_Q040K6 Cytochrome bd-type quinol oxidase, subunit 2 n=53 Tax=Lactobacillales RepID=Q040K6_LACGA Length = 340 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 95/363 (26%), Positives = 182/363 (50%), Gaps = 34/363 (9%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 + L+ +W+LLIG++ ++F ++GFD G+G +ARND E+ +++ ++G HW+GN+VWL Sbjct: 6 DFLQLLWFLLIGLLFMIFYFTEGFDYGVGMATKFLARNDQEKHLMMETIGPHWDGNEVWL 65 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 I AGGA+FA++ YA+ FSG+Y+ + L +L R ++F++ ++W + L Sbjct: 66 ITAGGAMFASFSDWYASLFSGYYILLFFTLFALIIRGVSFEFSAHAETEHGFRIWTSALF 125 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQG 184 GSL+ P + FG+L+ GVP + + S W ++ P ++ G+ + + ++ G Sbjct: 126 WGSLLAPFFLTMMFGSLIQGVPIDAQGNMSL----SVWNIVNPLSVVAGVAGVLLCLIHG 181 Query: 185 GVWLQLKTVG-VIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPL 243 +L+L+ + R+ ++ L+ L ++ ++ D F L + + + Sbjct: 182 INFLRLRIDDPELSERAASLNEKLYLVAYLGEVVFALLVFFQTDFFKLRPISSTIITLII 241 Query: 244 MKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIF 303 + L A +++ + + F+ + L GV+ Sbjct: 242 VVLTAWSD----------------------------ISLIKNKQVAAFVTSGLTLVGVVG 273 Query: 304 TAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 LFP V+ ++ SL + + +S+LTL +M ++ LI LPI L+Y +WSY Sbjct: 274 LLFNGLFPRVLIAT-DSAHSLLIKTAANSKLTLEVMTIVALILLPIALVYIIWSYVVFRR 332 Query: 364 RMT 366 R+ Sbjct: 333 RIK 335 >UniRef50_A5FA89 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Bacteroidetes RepID=A5FA89_FLAJ1 Length = 358 Score = 233 bits (595), Expect = 7e-60, Method: Composition-based stats. Identities = 98/376 (26%), Positives = 183/376 (48%), Gaps = 41/376 (10%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 + F W++++ IL V+++ DG+D G G + A + +++ + +++G W+ N+VWLI Sbjct: 1 MEFFWYVVLMGILAVYLVLDGYDFGAGIIHLFFADTEKDKKAITSAIGPFWDANEVWLIA 60 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGG LF A+P +YA++FSGFY+ +I++L L FR + + RG+I + W +WD I Sbjct: 61 AGGVLFFAFPTLYASSFSGFYLPLIMILWLLIFRAIGLEMRGQIHNPMWESIWDKAFGIA 120 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFW----------------QLLTPFPL 170 SL+ + FGIA GN++ GV F+ ++ F L Sbjct: 121 SLLLALFFGIALGNIVRGVNLGMVQNGVSTQEPHFFFLPLWNPTFSPQANELGIIDWFTL 180 Query: 171 LCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFV 230 G++S+ + + G W+ KT ++ + + +++++ ++ Sbjct: 181 FLGIVSVVALTIHGANWIIYKTNSSLNPKLKKVVFVLNIVLLVLVCIS------------ 228 Query: 231 LLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWG 290 +++ + +NFVE+P+LW FPLL F + G G Sbjct: 229 -------------LQIWHFIEPKPFHNFVENPILWFFPLLTFVGIAGLFKVRSFKKDGHG 275 Query: 291 FLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIV 350 F+ ++L G + +++FP V+PS+ SLT++++ + + LS L I L +V Sbjct: 276 FIFSTLFLVGGFASTAVSIFPNVLPSTNKVNPSLTIYNTAAHEYGLSAGLSWFFIALFLV 335 Query: 351 LLYTLWSYYKMWGRMT 366 ++Y + Y G+M Sbjct: 336 IIYFIIQYRVFSGKMD 351 >UniRef50_B6IQW9 Ubiquinol oxidase subunit II, cyanide insensitive n=32 Tax=Proteobacteria RepID=B6IQW9_RHOCS Length = 339 Score = 233 bits (595), Expect = 8e-60, Method: Composition-based stats. Identities = 98/363 (26%), Positives = 160/363 (44%), Gaps = 35/363 (9%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L I+ + + ++++ DGFD+G+G L P D +R +++NSV W+GN+ WLIL Sbjct: 8 LTLIFAGIGAFAVFMYVLLDGFDLGVGILFPWAPGGDADRDLMMNSVAPIWDGNETWLIL 67 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 G ALFA +P YA Y+ ++L+L +L FR +AF++R K + R++WD +G Sbjct: 68 GGAALFAGFPLAYAVLLPALYLPLLLMLIALIFRGVAFEFRFKADTS--RRLWDWSFHLG 125 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 SL G+ G + G +Y G + LTPF ++ G+ + L G Sbjct: 126 SLFATFAQGVILGGFIQGFEV-----QGRDYAGGLFDWLTPFSIMTGVALVAGYALLGAA 180 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 WL +KT G + S A L V++ + W PL Sbjct: 181 WLVMKTDGALQDWSYRVAGLALLAVLVFIAVVSLW-------------------TPLHSD 221 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 + N L PLL A+ R R F++A + Sbjct: 222 AIRDRWFSLPNLY---YLSPVPLLTAAVAAALFGALRRRRETAPFVLAMGLFLLSYLGLA 278 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 I+L+P+++P + TLWD+ S + +LV + +P LLYT ++Y+ G++ Sbjct: 279 ISLWPYLVPP------AFTLWDAASPPESQVFLLVGLAFLIPTTLLYTAFTYWVFRGKVR 332 Query: 367 TET 369 Sbjct: 333 PGA 335 >UniRef50_C0R3J3 Cytochrome d ubiquinol oxidase, subunit II n=31 Tax=root RepID=C0R3J3_WOLWR Length = 340 Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats. Identities = 100/373 (26%), Positives = 171/373 (45%), Gaps = 39/373 (10%) Query: 1 MFDYETL---RFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHW 57 MFD+ +L IW LLI + ++++++ DGFD+GIG LLP +D R +I+S+ W Sbjct: 1 MFDFSSLINLPLIWGLLIAIAVLLYILMDGFDLGIGILLPFAP-SDKCRDHMISSIAPFW 59 Query: 58 EGNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRK 117 +GN+ WL+L GG LFAA+P Y+ FY+ +I++L L R ++F++R K ++R+ Sbjct: 60 DGNETWLVLGGGGLFAAFPLAYSILMPAFYIPIIIMLLGLIVRGVSFEFRFKAE-GKYRR 118 Query: 118 MWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSL 177 +WD GSL G+ G + GV + G + + F ++ G+ + Sbjct: 119 LWDYAFHFGSLGAAFCQGMILGAFIHGVEVN-----GRNFSGGQFDWASAFSVMTGIAVI 173 Query: 178 GMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDAN 237 L G WL +KT + ++ GFV + Sbjct: 174 FGYALLGSTWLIMKTENITQEWARKVA-------------------SYTLGFVGIFMGLV 214 Query: 238 GPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAI-YRGRPGWGFLMASL 296 P + M NF L+ PLL + + + R F ++ Sbjct: 215 SVVTPFLNERIKNFWFSMPNFY---YLFSIPLLTSWLFFMLWFDLQNTKREYRPFFLSIA 271 Query: 297 MQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLW 356 + F GI+++P+++P T+ D+ +S +LS+ML++++ LPI+L YT + Sbjct: 272 IFFMGYLGLGISIYPWIIP------FQYTILDAAASGPSLSLMLIVIIPLLPIILTYTGY 325 Query: 357 SYYKMWGRMTTET 369 YY G+ E Sbjct: 326 CYYVFRGKSNYEH 338 >UniRef50_B8ESY7 Cytochrome d ubiquinol oxidase, subunit II n=4 Tax=Rhizobiales RepID=B8ESY7_METSB Length = 335 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 99/360 (27%), Positives = 172/360 (47%), Gaps = 40/360 (11%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 + W ++ ++++++ DGFD+G+G LL L+ ND RR ++ ++ W+GN+ WL++ Sbjct: 1 MTEFWTAVLAFTILLYVLLDGFDLGVGMLLALMP-NDRGRRHMLAAIAPVWDGNETWLVV 59 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 LF +P VY+ S FY+ + ++L L R ++F++R K R WD+ ++G Sbjct: 60 TATILFGVFPLVYSILLSAFYLPVFVMLAGLILRGVSFEFREK--SPHHRAFWDSCFILG 117 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 SLV + G+ G L+ G+P Y G + L+ F LLCG L G Sbjct: 118 SLVASFIQGMMIGALVEGLPVE-----NGRYAGGPFGWLSSFALLCGAGLCVGYALLGAG 172 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 WL KT + A +L LLAG ++ I L D Sbjct: 173 WLTRKTTQDVQ---------ALAFGILPSLLAGVLAFLAIIFVYSLLLDL---------- 213 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 A M+ + E PVL++FPL+G ++ ++I R R FL + + T Sbjct: 214 ------AVMHRWRERPVLFVFPLMGIAACVIMAVSIRRRRELLPFLSGASIFAAAFLTLA 267 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIV-LIFLPIVLLYTLWSYYKMWGRM 365 ++ +P+++P S+T+ ++ + + + + M LI LPI ++YTL Y+ G++ Sbjct: 268 VSFYPYMIP------FSVTIAEAAAPRSSQAFMFWGAGLIVLPITIIYTLVVYFVFKGKV 321 >UniRef50_Q4UWQ0 Cytochrome D oxidase subunit B n=3 Tax=Xanthomonas campestris pv. campestris RepID=Q4UWQ0_XANC8 Length = 339 Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats. Identities = 80/366 (21%), Positives = 156/366 (42%), Gaps = 37/366 (10%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 E ++ + + +V +++ DG D+G+G L R+D +R ++ S+ W+GN+ Sbjct: 5 LSVELMQHLSAAALAFTVVTYVVLDGTDLGVGMLFA-ANRSDADRHLMAYSILPVWDGNE 63 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 WL+L GG+L A +P YA + YV ++++L +L R +A +YR ++ R R++ D Sbjct: 64 TWLVLGGGSLLAMFPSAYAIFLNATYVPLVVMLLALICRGVALEYRDQLGTDRRRRVLDV 123 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 ++ SL+ G+ G L GV +Y G+ + L PFPL CG+ + + Sbjct: 124 VFMVASLLATFCQGVVAGTYLAGVAHRA-----GQYAGNGREWLQPFPLFCGVALVVGYL 178 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 L G WL ++ G + R++ + +++ L WL + DA+ Sbjct: 179 LLGACWLVWRSEGQLQQRARHQARVLGIVLGALLTLGVVWLARLTPIYAQRLGDAHISVP 238 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 ++ ++ ++ L +F +LG Sbjct: 239 LGTSVLGLMVAMYLLMRSRHAFLPLFAVLGVV-------------------------VAT 273 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 ++P V+P +TL + S + +ML+ + +P L Y+ + +Y Sbjct: 274 YAGVLAIVYPMVLPP------DITLAQAASPPASQGVMLLAFAVLVPCTLAYSSYGFYVF 327 Query: 362 WGRMTT 367 G++ Sbjct: 328 RGKVKP 333 >UniRef50_C7HZB4 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Thiomonas intermedia K12 RepID=C7HZB4_THIIN Length = 341 Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats. Identities = 86/369 (23%), Positives = 165/369 (44%), Gaps = 38/369 (10%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 + L +W+L+IG+ +V +++ DGFD+G+G L V + R++++ S+G+ W+ N+ W Sbjct: 10 HHVLATVWFLIIGLFMVFYVVLDGFDLGVGVLSLFVG--ERRRKVMMASLGSIWDANETW 67 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L++ GG LF A+P Y G Y+ +IL+L R ++F++ + + W A Sbjct: 68 LVVIGGTLFGAFPLAYGTVLHGLYIPIILMLLGFMLRGVSFEFH---ELSERKAFWGAMF 124 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 +GSL+ + G A G LL GV + Y+GS W+ L+PF ++ L + + Sbjct: 125 GLGSLLATIAQGFALGGLLNGVKV-----VNGVYVGSVWEWLSPFSVIVVLGVVAGYAML 179 Query: 184 GGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPL 243 G +L +KT I + A ++ + A +W + + A+ P+ Sbjct: 180 GSTYLIIKTKDDIQAGCYQRGQLLA--WIMLAVGAVVTVWTPLQFPQIFARWLTIPNIYF 237 Query: 244 MKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIF 303 + P L ++ + A+ R F+ L+ Sbjct: 238 FA--------------------VLPALALLSFVMLLRALKRQAEVAPFVWTMLIFLFSFA 277 Query: 304 TAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 T +P+++P SLT+ + S TL ML+ + + +P+++ Y ++ Y G Sbjct: 278 GLAATWYPYIVP------GSLTIDQAASDSGTLVFMLIGIGMLIPVMITYNVYQYIVFRG 331 Query: 364 RMTTETLRR 372 ++ + Sbjct: 332 KIDPDAEHA 340 >UniRef50_C2CTD2 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Corynebacterium striatum ATCC 6940 RepID=C2CTD2_CORST Length = 336 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 96/368 (26%), Positives = 163/368 (44%), Gaps = 39/368 (10%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLV-----ARNDDERRIVINSVGAHWEGNQ 61 L +W+++I + + +GFD G+G LLP + A +D R + ++G W+GN+ Sbjct: 3 LNTVWFIIIAFFFTGYFVLEGFDFGVGMLLPFLRGESAADSDARRTAAVRAIGPVWDGNE 62 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWLI+AG ++FAA+P YA FSGFY+ ++L++ +L R ++ ++R K+ WRK D Sbjct: 63 VWLIVAGASIFAAFPEWYATLFSGFYLPLLLIVTALIIRGVSLEWRVKVDTLAWRKRCDI 122 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 G+ +GS +P +++G+A N++ GV F+ + G F LL P LL G L + Sbjct: 123 GIALGSYLPALLWGVAMTNIVAGVAFSSPGHVDSVIDG-FLGLLNPRGLLGGAAFLLLFA 181 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 G ++L LKT + + + + L Sbjct: 182 FHGALFLGLKTHAPVRTQVHAIARGWLAIATLA--------------------------- 214 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 V + WM WI + ++ GR F + V Sbjct: 215 -----VGAIYLVWMQLNFGKSWTWIALAAVALALVAAFAGLWSGRDRTAFFGTAAAIIAV 269 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 LFP V+PS L ++ +++S TL IM ++ P VL+ W+Y++ Sbjct: 270 GLALFGALFPNVLPSVTDVA-GLDIYTASASPYTLKIMTWAAVVLAPAVLIGQGWTYWQF 328 Query: 362 WGRMTTET 369 R+ + Sbjct: 329 RARIGVDA 336 >UniRef50_D2B3T8 Cytochrome oxidase subunit II n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B3T8_STRRD Length = 313 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 99/362 (27%), Positives = 161/362 (44%), Gaps = 53/362 (14%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L W+ +I + + + +GFD G+G L P ++RN+ ER+ V+ ++G W+GN+VWLI Sbjct: 3 LTTFWFAVIAFLWTGYFVLEGFDFGVGLLAPALSRNEAERKQVLGTIGPVWDGNEVWLIT 62 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 A GA+FAA+P YA S FY+ + LVL L R + ++RGK+ + R D G+++G Sbjct: 63 AVGAMFAAFPAWYAGLLSEFYLPVTLVLVGLIVRGIGLEWRGKVHHSSDRAWCDLGILVG 122 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S +P ++G F +LL A L+ G+ SL + +L G V Sbjct: 123 SALPAFLWGAVFADLLHDSAIA--------------------ALVGGVFSLSLCVLHGAV 162 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 ++ LKT G + R++ ++ P+ + Sbjct: 163 FVTLKTSGPVRARARRTA--------------------------MVTSAVALPAAVVALS 196 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 G + ++ +P LW L + +RGR GW F + Sbjct: 197 NIPAAGTAVADWTAAPWLWACALTAMAALAAGIALTWRGRDGWAFAATASSIALGSIALF 256 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 L+P +P+ LT+ ++ S TL ++ I LI LP VL Y WSY+ R+ Sbjct: 257 GALWP-------APLPGLTVAEAASGPYTLGMLTWIGLIALPFVLGYQAWSYWVFRKRLV 309 Query: 367 TE 368 E Sbjct: 310 AE 311 >UniRef50_D0WHD0 Cytochrome D ubiquinol oxidase, subunit II n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WHD0_9ACTN Length = 354 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 129/371 (34%), Positives = 192/371 (51%), Gaps = 20/371 (5%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 L IW++LI V++ + + DGFD+G G L P VA+ D+E+ ++ SVG W+GN+VW Sbjct: 1 MTVLGIIWFILIFVLIAGYFVLDGFDLGAGVLSPFVAKTDEEKALLRRSVGPVWDGNEVW 60 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L+ AGGALFAA+ YA FSGFY+A+ILVL L R ++ +Y W+K W+A Sbjct: 61 LLTAGGALFAAFAPAYATTFSGFYLAIILVLMGLIVRAISLEYSANETKPGWKKAWNALF 120 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 +GSL+P ++FG+A GN+ G+P L+TPF LLCGLL L M ILQ Sbjct: 121 FVGSLLPALLFGVAIGNVYAGIPMNANGDYVGI---PLLGLVTPFTLLCGLLGLSMFILQ 177 Query: 184 GGVWLQLKTV--GVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 G WL LK + +R+++A + A+L ++ F L + V I ++ + Sbjct: 178 GASWLALKAPEGSAMAVRARMARRTFAILAIVFFALVTVYALVIIKPEMVGGLSILRIAF 237 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 ++ VA+L +M E L +F C L L ASL V Sbjct: 238 AVL-FVAMLAATFMKATDEKASLVVFLASSVACFALV-----------ALLGASLFPNLV 285 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 + AG PF + ++ + +++T+ + S LTL+ ML I + LP VLLY Y Sbjct: 286 VAGAGD---PFNLFATAASGANITIETAASEDLTLAWMLGITCVGLPFVLLYHFLVYRTF 342 Query: 362 WGRMTTETLRR 372 G++T E Sbjct: 343 AGKLTKEDASE 353 >UniRef50_B2IDR4 Cytochrome d ubiquinol oxidase, subunit II n=19 Tax=root RepID=B2IDR4_BEII9 Length = 337 Score = 225 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 90/363 (24%), Positives = 149/363 (41%), Gaps = 36/363 (9%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW ++ + +++I DGFD+G+G L R++ R +++SV W+GN+ WL+L Sbjct: 8 LPLIWAGILATAVGLYVILDGFDLGLGILF-FTTRDETARDDMMSSVAPFWDGNETWLVL 66 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GG L AA+P Y+ Y+ +IL+L +L R +AF++ + A W WD G Sbjct: 67 GGGGLLAAFPLAYSIIMPALYIPIILMLLALILRGVAFEF--RWAAKPWHGFWDVAFAGG 124 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S + + G G L+ G+ + G + +PF LLCG + L Sbjct: 125 STLAALAQGFVLGGLIQGITVK-----DNAFAGGPFDWFSPFALLCGFGLVAGYGLLACC 179 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 WL +KT G + ++ L V+ C + W + Sbjct: 180 WLLMKTSGGLAAHARRLALPFLLAVVFCAAVVSIWTPLRYPAIAERWFSTPNIF------ 233 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 LW P L A+ RG F + Sbjct: 234 ----------------YLWPLPAATGALAFLVFRALRRGDDFIPFFGVVGIFLLCFAGLA 277 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 I+ +P+++P S+ LW + + +L ML+ V I LP++L YT++ Y+ GR+ Sbjct: 278 ISAYPYLVPHSID------LWQAAGAPESLKFMLIGVSILLPVILGYTIFVYWTFRGRLR 331 Query: 367 TET 369 Sbjct: 332 VGE 334 >UniRef50_A6C9B8 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C9B8_9PLAN Length = 346 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 92/358 (25%), Positives = 173/358 (48%), Gaps = 31/358 (8%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 + +W +L+ +++ +++ DGFD+G+G L L+AR+ E++ +I S+ W+GN+VWLI Sbjct: 1 METVWLILLVLMIATYIVLDGFDLGVGVLHLLIARDRSEQKQIIQSIAPVWDGNEVWLIA 60 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGG + A+P ++ FSGFY+ + +V+ L FR ++ + ++D+ W W+ L + Sbjct: 61 AGGTMMMAFPGFLSSMFSGFYLPLTMVVWLLIFRAISIELPHYLSDSLWIHFWNLMLFVA 120 Query: 127 SLVPPVVFGIAFGNLLLGVPFA-----FTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 S + ++ G A N+ GVP F P +G +L + +L G+ S ++ Sbjct: 121 SGLLIIILGAAMANIYRGVPLDATGSFFEPLWTNFRIGPPTGILDWYTILSGVTSATFLL 180 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 G +WL KT G + ++ A WLW G G L+ A+ Sbjct: 181 HHGALWLVAKTDGRVQQHARQAA---------------TWLWTGSIGLTLVIFIASWYVQ 225 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 PL + +F E+P I PL L + ++ + FL + L + V Sbjct: 226 PLART----------SFSETPWKIILPLAAVLSLLASGYLRWKNKNMPAFLSSGLFIYLV 275 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359 IF+ + ++P ++P ++P LT+++++ L+ L + + +V +Y + Sbjct: 276 IFSGAMAIYPNILP-GLNPEHHLTIYNTSPGPEKLTTTLYWWIPGILLVGVYFTILFR 332 >UniRef50_C0XPN4 Cytochrome bd ubiquinol oxidase subunit II n=2 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XPN4_9CORY Length = 334 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 101/365 (27%), Positives = 165/365 (45%), Gaps = 39/365 (10%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARN-----DDERRIVINSVGAHWEGNQ 61 L IW+L I V+ F + +GFD G+G LLP V + D R ++++G W+GN+ Sbjct: 3 LNTIWFLGIAVLFAGFFVLEGFDFGVGMLLPFVGGDTPEDNDRRRTAQVSTIGPLWDGNE 62 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWL+ A A+FAA+P YA SGF+ +L+L L R ++ ++R K A+WR+ D Sbjct: 63 VWLVTAAAAIFAAFPEWYATLLSGFFFLFVLILVGLIVRGVSLEWRVKGKTAQWRRRCDI 122 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 G GS +P ++G+ F NL+ GVP ++ + F L P L GL + + Sbjct: 123 GTTFGSYLPAFLWGLIFTNLVAGVPLNDKGRISS-FTDGFVGLFNPLGLAGGLAFVLLFA 181 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 L G +++ LK + R++ LA WL Sbjct: 182 LHGAIFVALKAHEPLRGRAR--------------TLALRWLAAPT--------------- 212 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 +V++L W+ N + WI + + A + R G+ F ++ V Sbjct: 213 ---AIVSLLYVVWLQNVAGAQWTWIAVAVAALGIAAAIGATFANRDGFAFAATTIAIAAV 269 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 +LFP V+ S+ S ++ + S+ TL IM +I LP V++ WS++ Sbjct: 270 CVVLFGSLFPDVIRST-SAHPGWDIYSAASNPYTLRIMSWAGIIILPAVIVAQAWSFWSF 328 Query: 362 WGRMT 366 R+ Sbjct: 329 RQRVK 333 >UniRef50_A4SZB4 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 RepID=A4SZB4_POLSQ Length = 328 Score = 221 bits (563), Expect = 3e-56, Method: Composition-based stats. Identities = 87/355 (24%), Positives = 162/355 (45%), Gaps = 37/355 (10%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 + IW L+ +++ ++I DG+D+G+G L+PL+ R+D ER +++SV W+ N+ WL+L Sbjct: 5 ITLIWGGLLAFVVLAYIIFDGYDLGVGILIPLM-RSDQERAQMLSSV-RLWDANETWLVL 62 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GG LFA +P Y+ F Y+ +I +L SL R + ++R + + + +WD+ +G Sbjct: 63 GGGGLFAVFPLAYSIIFPALYLPLIGMLLSLVIRGVVSEFRWQ--NKQSAMIWDSLFFVG 120 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S + G+ G L+ G+ + Y G LTPF ++ G+ L G Sbjct: 121 SFLAACFQGMILGALVQGIQV-----VDHAYAGGPLDWLTPFSVMTGIALALGYSLLGAT 175 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 WL LKT G + ++ K L++L + W ++ Sbjct: 176 WLVLKTDGELQNKAFSLIKVLGSLMVLMVGVVSLWTPFLKQDYLSRWFA----------- 224 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 + ++ + PLL + A+ R F+ + Sbjct: 225 -----------WPQAIYVLPVPLLLAAAIFILFRAVNRRNTWVPFVATISIFLLSYIGLL 273 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 I++FP+V+P ++ TLW++ + + +L LI +PI+L+YT ++++ Sbjct: 274 ISIFPYVVPDTI------TLWEAAAPLSSQKFLLPGTLILVPIILIYTTYAHWVF 322 >UniRef50_C7N0L6 Cytochrome d oxidase cyd, subunit II n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N0L6_SLAHD Length = 346 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 119/360 (33%), Positives = 184/360 (51%), Gaps = 22/360 (6%) Query: 8 RFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILA 67 IW++L+ V++ + I DGFD+G G L P +A+ND+E+ ++ ++G W+GN+VWL+ Sbjct: 5 AIIWYVLVFVLIAGYFILDGFDLGAGVLSPFIAKNDEEKLTLMKAIGPVWDGNEVWLLTG 64 Query: 68 GGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGS 127 GGALFAA+ YA FSGFY+A+ILVL L R ++ ++ D WRK+W IGS Sbjct: 65 GGALFAAFAPAYATTFSGFYLAIILVLMGLIIRAVSVEFAAH--DPAWRKLWFVLFFIGS 122 Query: 128 LVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVW 187 L+P +++G+A GN+ G+P L+TPF LLCGLL L M ILQG W Sbjct: 123 LLPALLYGVAVGNIYAGIPMDAAGNYIGV---PLIGLVTPFTLLCGLLGLTMCILQGACW 179 Query: 188 LQLKT--VGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 L +K G + R++ + A++ ++ F L + I + L+ Sbjct: 180 LSVKAPLEGELLARARGLRRPVAIVAIVLFALVTLYALFIIKPELAAGLGVLRILFALVV 239 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 + A++ E+ L IF + C L G L +S+ V+ + Sbjct: 240 VAALVFVLLKAVQPEASDLTIFLVASVACFALV-----------GLLASSMFPTFVVSGS 288 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 G L PF+ + + +++T D+ S LTL M I + LP+VLLY Y GR+ Sbjct: 289 GDPLTPFM---TATEGAAITAADA-SGDLTLKWMFGITCVALPLVLLYHFLVYRTFAGRL 344 >UniRef50_D2L7C6 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L7C6_9DELT Length = 337 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 82/367 (22%), Positives = 153/367 (41%), Gaps = 35/367 (9%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 +L W+ ++ ++L +++ +DG+D+G G L L + R I+ S+ W NQ WL+ Sbjct: 6 SLADAWFGILALLLWLYVFTDGYDLGAGIL-CLHEADPVHREIMAESIDGVWHANQTWLV 64 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 L GG LF A+P VY + Y+ +L ++ R + +YR K + + W Sbjct: 65 LLGGVLFGAFPLVYGTVLAALYLPAGFLLFAIMARGIGLEYRMKADN---KLPWSRLFGW 121 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GS+ + G G +L G+ F + + G + +PF +L L + G Sbjct: 122 GSVAVTLAHGFLLGGVLQGMDFD-----GLHHAGGAFDWFSPFTILVAATFLCLYAFLGA 176 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 WL KT G + +S++ + R + +L ++ + L+ + G Sbjct: 177 AWLVWKTEGPLQHQSRIWSVRYGAATVGMLVLLAGYIALDGRLGFLVGRPGQGGLGAF-- 234 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 + ++ FC ++ +I +G + +LM V Sbjct: 235 ------------------FILSLVVAVFCAAFSIRSIGKGGEVLPLVWCALMLVAVFVAF 276 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 G +L+P ++P LT+ + + L L IML V LP++ LY + + + G++ Sbjct: 277 GGSLYPLIVPPR------LTIEQAAAPPLMLKIMLWTVGSMLPVIFLYNAYHFRLVRGKV 330 Query: 366 TTETLRR 372 E Sbjct: 331 RLEDETH 337 >UniRef50_Q2JM63 Cytochrome d ubiquinol oxidase, subunit II n=30 Tax=Cyanobacteria RepID=Q2JM63_SYNJB Length = 349 Score = 216 bits (551), Expect = 8e-55, Method: Composition-based stats. Identities = 85/372 (22%), Positives = 166/372 (44%), Gaps = 36/372 (9%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 L +W+ ++G+ L ++++ DGFD+G+G L L A ++ R I++ S+G W+ N+ WL+ Sbjct: 10 FLPQVWFFILGLFLFLYVLLDGFDLGVGIL-SLTASSETRRSILMTSLGNVWDANETWLV 68 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 L GG+LF ++P YA + Y+ +++++ L R ++F++R + + +W+ + Sbjct: 69 LMGGSLFGSFPLAYATILNALYIPLVIMVVGLILRAVSFEFRENADN---KLVWNLAFGV 125 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GS + + G A G++ G+ + GS W LT LL L + +L G Sbjct: 126 GSFLAALGQGFALGSVFEGIRVDEA----GHFAGSPWDWLTWRTLLVALTLIQGYVLIGS 181 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 +L +KT G + A +L + S P+M Sbjct: 182 AYLIVKTTGELQETYYKTATIATWTTLLGAVFITI-------------------STPIMS 222 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 A F + P+LG L + ++ R + L+ Sbjct: 223 EQARAQLFSPPLFY---IFAAIPVLGLLLVALLLRSLRRREENSVLVYTFLIFALSFIGL 279 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 G +FP ++P SV T++++ +S +L ML + +P++L Y +++Y G++ Sbjct: 280 GFMVFPNIIPPSV------TIYEAAASPSSLVFMLTFIGFLIPVILSYNIYNYVVFRGKI 333 Query: 366 TTETLRRNENEL 377 + + E ++ Sbjct: 334 VVQEVAAEEAKV 345 >UniRef50_Q2SP33 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SP33_HAHCH Length = 331 Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats. Identities = 92/364 (25%), Positives = 160/364 (43%), Gaps = 40/364 (10%) Query: 8 RFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILA 67 I+ LLI V ++++++ DGF +G+G L P +++ D +R I I S+ W+ NQ WL+ Sbjct: 4 ALIYLLLIAVGVLMYVLLDGFSLGVGILSPWLSKAD-DRAIAIKSLSHLWDSNQTWLVFG 62 Query: 68 GGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGS 127 G LFA +P+ YA S Y+ +IL+L +L FR +AF++ K +R WD GS Sbjct: 63 GVVLFAGFPKAYATVLSQLYLPIILMLIALIFRGVAFEFYFKSHTSRG--WWDFSFSFGS 120 Query: 128 LVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVW 187 + + GI G+L+ G P ++ TPF L+ + + L G W Sbjct: 121 TLATLSQGIVLGSLVQGFSLEPQPSEQI-------AWFTPFSLMTAVALVCGYALLGSCW 173 Query: 188 LQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLV 247 L K+ G + + + + VM L W+ + V Sbjct: 174 LVRKSSGRLQVSVRRLGIISLFAVMFFLALVSVWMLLA------------------QPQV 215 Query: 248 AVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGR--PGWGFLMASLMQFGVIFTA 305 W + +PV PLL + L + G +A + Sbjct: 216 FQRWLTWPTGLLLAPV----PLLSAYVGLRLWQMLRSGEGNDLKPLGLAMALFGLAFIGL 271 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 +FP+++P LT+W++ + + + S L+ +++FLPIV+ Y +++Y G+ Sbjct: 272 AAGMFPYIIP------GQLTIWEAIAPERSTSFTLIGIVLFLPIVIAYNIYNYRVFSGKT 325 Query: 366 TTET 369 T+ Sbjct: 326 NTQD 329 >UniRef50_A7MEL0 Putative uncharacterized protein n=2 Tax=Cronobacter RepID=A7MEL0_ENTS8 Length = 340 Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats. Identities = 71/367 (19%), Positives = 143/367 (38%), Gaps = 43/367 (11%) Query: 12 WLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGAL 71 + ++++++ DG D+G+G L P ++ R+ + S+ W+GN+ WL+L GAL Sbjct: 16 AGALAAGVLIYVLLDGADLGVGLLAPF--QSPQARQQMNISLLPVWDGNETWLVLTAGAL 73 Query: 72 FAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPP 131 A +P ++ +S Y+ + ++L ++ R +A +YR +++DA + GS + Sbjct: 74 LAMFPVAFSILYSALYLPVYIMLLAMIVRGVAIEYRHLRP-----RLFDALFIAGSWLTS 128 Query: 132 VVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLK 191 + G G + G+ + G L+PF + C + L G WL + Sbjct: 129 LSQGATMGAWVEGITHN-----GATFTGGPMDWLSPFSVFCAMALSVGYALLGACWLIWR 183 Query: 192 TVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLP 251 G ++ ++ ALL W + + L Q Sbjct: 184 CEGELNAWARRQAMWLALLTAALLAGLLVWTVQLNETYRLHLQLWR-------------- 229 Query: 252 GAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFP 311 +G L ++ + + R M L+ + +FP Sbjct: 230 -----------WSGPLVAVGLLAFLGVILTLRQRRDFLPLAMTLLLFITAFGGMLLAVFP 278 Query: 312 FVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLR 371 F++P +L L + + T +ML+ +F+PI L+Y W ++ G++ Sbjct: 279 FILPP------NLLLIQAAAPPATQKLMLIAFGVFVPITLIYNSWGFWVFRGKIHAAREE 332 Query: 372 RNENELY 378 + + Sbjct: 333 ERHSRRH 339 >UniRef50_Q1LCN4 Cytochrome d ubiquinol oxidase, subunit II n=69 Tax=Bacteria RepID=Q1LCN4_RALME Length = 345 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 85/371 (22%), Positives = 157/371 (42%), Gaps = 55/371 (14%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 + ++ L+G+ +++++I DG+D+G+G LL +D ++ +I S+G W+ N+ WL+ Sbjct: 15 WMPLVFLALMGLSMLIYVILDGYDLGVGVLLRRA--DDVDKDTMIASIGPFWDANETWLV 72 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 L G L A+P + + Y+ + L+L L R +AFD+R K D + W+ Sbjct: 73 LGVGLLLTAFPMAHGVILTQLYLPVALMLAGLIIRGVAFDFRVKARDPH-KPWWNFAFYA 131 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GSL+ G+ G + G + L F + GL + L G Sbjct: 132 GSLLASFSQGLMLGLYITGFRYDLPNLL--------------FAVAVGLCLVAGYCLLGA 177 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 WL +KT G + LR+ +R+ LW+ G ++ S + + Sbjct: 178 SWLIMKTTGNLQLRAIYWARRS--------------LWLTAIGVAAISIVTPMVSERIFE 223 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRP----------GWGFLMAS 295 LP + L PLL ++ + R R F+ + Sbjct: 224 KWFSLPNIIL--------LAPIPLLTMVLFVVIERLLRRMRDLHANGNDRWCWVPFVGTA 275 Query: 296 LMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTL 355 ++ +LFP+++ + +W + S+ +L ++L+ +I LP +L YT Sbjct: 276 VIFLLAFNGLAYSLFPYLVVDRID------IWQAASAPESLMVILIGAVIVLPTILGYTA 329 Query: 356 WSYYKMWGRMT 366 ++Y WG+ T Sbjct: 330 YAYRVFWGKAT 340 >UniRef50_C4XJ24 Putative cytochrome d ubiquinol oxidase subunit II n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XJ24_DESMR Length = 336 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 93/371 (25%), Positives = 161/371 (43%), Gaps = 35/371 (9%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M TL +W+ ++ ++L +++ +DGFD+G+G L LV +N+ R ++I +V W N Sbjct: 1 MEAPVTLADVWYWILALLLWLYVFTDGFDLGVGIL-CLVEQNEPRRSVMIETVEGVWHAN 59 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 Q WL++ GG LF A+P VY + Y+ +L +L R + +YR + D + W Sbjct: 60 QTWLVMLGGVLFGAFPLVYGTVLAALYLPAGFLLFALMTRGMGIEYRPETDDP---RFWS 116 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 GS+ V G+ G +L G+PF + YLG L PFP+L + L + Sbjct: 117 QVFGWGSVAVTVAHGLLLGAILQGMPFD-----GLRYLGGPLDWLAPFPILVAVTLLCLY 171 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 + WL LKT G + ++L R + C +L ++ + L+ + G Sbjct: 172 PMFAAAWLVLKTEGELQDAARLWGIRFGSAAVACLVLLVGYIALDGSLGHLVGRPGQGGL 231 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 +PL L+ V+ + A+ +G + + M Sbjct: 232 SPLFVLLLVVAVLNAALYF--------------------RALGKGWEHRPLMYCAAMLAF 271 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 V G+ LFP ++P +V+ S+ L +ML ++ +P+VL Y + Y Sbjct: 272 VFLAFGLNLFPLIVPPAVTAASAAAP------DDMLRVMLYVIGGLMPVVLFYNAYQYRV 325 Query: 361 MWGRMTTETLR 371 G+ Sbjct: 326 FRGKAVPGEEA 336 >UniRef50_A9ASF7 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Burkholderia multivorans ATCC 17616 RepID=A9ASF7_BURM1 Length = 326 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 88/365 (24%), Positives = 153/365 (41%), Gaps = 43/365 (11%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 + + W+ + LV +++ DGFD+G+G L D R +I S+ W+GN WL+ Sbjct: 1 MMTWFWFAELAFALVAYLMLDGFDLGVGMLTAFAG---DARDEMIASIAPVWDGNGTWLV 57 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 +AG LF A+P VY+ Y + L+L L R +A ++R K A R R++WD L + Sbjct: 58 IAGTILFGAFPSVYSIVLPALYAPLCLMLAGLIMRGVAIEFRHKAA--RSRRIWDVLLFV 115 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GSL+ V+ G+ G G+P ++ Y G+ ++ +PF CG+ L G Sbjct: 116 GSLLASVMQGVCVGTYAHGLPVD-----QLRYAGNGFEWCSPFSFWCGVSLALGYALLGS 170 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 WL LK + A R A + L L ++ Sbjct: 171 GWLVLKGQRASQRIGRDAIARLAPITALFVL-------------------------SILA 205 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 + ++ P+L+ P+ L A R +L A+ ++ Sbjct: 206 STLLTETTVETRWLLHPLLFALPVAACATFLCAPAAARRD-GASAYLFAAGGCIAMVLML 264 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFL-PIVLLYTLWSYYKMWGR 364 + PF++P LTL + + + + + M +F+ P ++ YT +Y GR Sbjct: 265 AASYLPFIVP------FDLTLDAAAAPRASQTFMFWGAGLFVMPFIVFYTCVAYSVFRGR 318 Query: 365 MTTET 369 ++ + Sbjct: 319 VSNDH 323 >UniRef50_UPI0001C321E0 cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C321E0 Length = 449 Score = 202 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 90/401 (22%), Positives = 161/401 (40%), Gaps = 32/401 (7%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M D L+ +W + I V+ V++++ +GFD G+G LL V R+ +RR+ ++++G W N Sbjct: 1 MADLTLLQSVWLVAIAVLWVLYLVLEGFDFGVGMLLRRVRRDQLDRRVALHAIGPTWAAN 60 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 +VW+I+A +F A+P YAA SG Y+ + +VL S+ R + GK D RWR W+ Sbjct: 61 EVWVIVAVVGMFGAFPGWYAAWASGLYLPLAVVLLSIVARNAGIELLGKREDERWRLRWE 120 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 + + S V P +G+ + + G+ E +GS ++TP+ +L GL + + Sbjct: 121 RVIELSSTVAPFCWGLMWAATVHGLSLRGE-----EVVGSPLDVVTPYSVLGGLALVALC 175 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATK------------------------RAALLVMLCFL 216 QG +L L+T G + R+ A + ++ Sbjct: 176 RAQGAAFLMLRTDGGVRSRAAGELALAAPVAAVVGIGFLAWTGAASTPGAAGWIALVSCG 235 Query: 217 LAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPL 276 +A + + DA G G + Sbjct: 236 VALTLVALLARRGAGAGVDAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGA 295 Query: 277 LTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSV---SPISSLTLWDSTSSQ 333 A G G I + F + P ++ + L L D + Sbjct: 296 GGAGAGAGGAGGRSGAAPFAAASAAIGLLVASWFCVLFPDAIAAAGGGAGLALTDVAAGS 355 Query: 334 LTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLRRNE 374 TL++M V+ + +P++L W+Y+ R+T + + Sbjct: 356 YTLTLMTVLAGLMVPLLLAAQAWTYWAFRHRITRADVGERQ 396 >UniRef50_C5A672 Cytochrome bd ubiquinol oxidase, subunit II (CydB) n=2 Tax=Thermococcus RepID=C5A672_THEGJ Length = 331 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 104/364 (28%), Positives = 169/364 (46%), Gaps = 41/364 (11%) Query: 8 RFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILA 67 W+ +L +++ DGFD+GIG LL L+ +N +R I+IN++G W+GN+VW I Sbjct: 4 ATAWFYFSAFLLGMYLAFDGFDLGIGALLALI-KNQKDRDILINTIGPVWDGNEVWFITW 62 Query: 68 GGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGS 127 G LFA WP +YA FS FY+A+ L+ L FR + F++R K +++WD + S Sbjct: 63 GAGLFAMWPALYATLFSTFYLAIWLLAFLLIFRAVGFEFRNKN-----KELWDKLFALVS 117 Query: 128 LVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVW 187 + P+V G+ GNL++G+P + GS L P+PL+ GL L I G W Sbjct: 118 ALIPLVVGVVVGNLVMGIPIDANG-----FHGSLLTLFRPYPLIVGLFILFATIWHGANW 172 Query: 188 LQLKTVGVIHL--RSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 KT G + R +V+L + G +W + L+ Sbjct: 173 GVYKTTGKLQEELRGYAFKFWLLTVVLLLLTVIGMKIWAPLRFERLM------------- 219 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 +P+ L+ LL I +G F ++ L V+F Sbjct: 220 ---------------TPLGLGLTLVILVAGLLDGHLIKKGEERLAFYISWLAFPLVVFLV 264 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 +++P+ + S+ P L++ D +S LTL +L + +I I++ YTL+ Y G++ Sbjct: 265 YYSMYPYWVISTTDPNFKLSIHDLAASPLTLKAVLGVSVILAVIIMAYTLYVYKMFGGKV 324 Query: 366 TTET 369 T Sbjct: 325 TEAE 328 >UniRef50_B2RJL6 Cytochrome d ubiquinol oxidase subunit II n=56 Tax=Bacteria RepID=B2RJL6_PORG3 Length = 387 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 84/398 (21%), Positives = 161/398 (40%), Gaps = 32/398 (8%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 +Y L+ WW L+ ++ + + F G L + +++ +++++NS G WE Sbjct: 1 MEYALLQHYWWFLVSLLGALLVFLL-FVQGGQSFLFSLGKDELTQKMMVNSTGRKWEFTF 59 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 L+ GGALFA++P Y+ +F G Y +L+L + ++++Y+ K + RK + Sbjct: 60 TTLVTFGGALFASFPLFYSTSFGGAYWVWMLILFCFIIQAVSYEYQSKHGNVWGRKTYQI 119 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLG-----------------SFWQL 164 L I ++ P++ G A G F + G + Sbjct: 120 LLFINGVLAPLLLGTAVSTFFTGSSFVVNKMAMFDLSGGNQIVSAWQPFNGWQLRGLEAV 179 Query: 165 LTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWV 224 L + ++ GL + + ++ + A L F LA + Sbjct: 180 LNLWNVVLGLAVFFLARVSALLYFINNIDDESLYAAAKRRLWANTAAFLIFFLAYIAFLL 239 Query: 225 GIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPL----LTVM 280 +GF + NP+ K V + P ++ NF++ P + LLG L LT++ Sbjct: 240 TTEGFAV---------NPVSKEVYMEPYKYLYNFLDMPAVLAVFLLGVILVLGGIGLTLL 290 Query: 281 AIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIML 340 R W +++ + PS+ SSLT+ +++SS TL +M Sbjct: 291 RKGFKRGIWLHGTGTVLTVLALLLVAGWNDTSWYPSTYDLQSSLTIENASSSHFTLKVMS 350 Query: 341 VIVLIFLPIVLLYTLWSYYKMWGRMTTETLRRNENELY 378 + I +P VL Y +++ + R T+ ++ +Y Sbjct: 351 YVS-ILIPFVLAYIFYAWRALDIRKITKKEMEQDDHVY 387 >UniRef50_B2JUZ0 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Burkholderia RepID=B2JUZ0_BURP8 Length = 329 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 82/370 (22%), Positives = 151/370 (40%), Gaps = 46/370 (12%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 + L ++W+ L+G++L ++++DGFD+G+G L L AR +R +++ S+G W+ N+ W Sbjct: 6 HSLLAYVWFGLLGLMLAFYVVTDGFDLGVGILSLLRAR-RADRDVMVESIGHVWDANETW 64 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L++ GG LF A+P YA Y ++ ++ L R A ++R + +WD Sbjct: 65 LVVLGGGLFGAFPLAYAQLMQDLYSPVMALIAGLIMRGAAIEFRHSVEHG---PLWDKVF 121 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 IGSL+ + G+ G ++ G+ ++ F ++ + L Sbjct: 122 GIGSLIAALAQGVVLGKVITGL--------------VPGEMNNVFVIVAATGVVAGYALL 167 Query: 184 GGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPL 243 G +L KTVG+I S+ +A+L + LL W D Sbjct: 168 GATYLVKKTVGMIEQWSRRLALLSAMLTVAAALLLTTATWFFSDVGSERWSRPGV----- 222 Query: 244 MKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIF 303 +L + F ++++Y G F A + Sbjct: 223 -----------------MHLLIALGIAAAFAFAFIMVSLYLGSSRGPFRGAVTLFVVSFA 265 Query: 304 TAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 ++LFP +P L + + S TL+ ML + + P+++ Y L+ YY G Sbjct: 266 GLAVSLFPDFVP------GKLGIVQAASDSHTLAFMLAGIGLIFPVMIGYNLYQYYIFRG 319 Query: 364 RMTTETLRRN 373 ++ Sbjct: 320 KVAGGAHAGE 329 >UniRef50_D0L0A7 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Gammaproteobacteria RepID=D0L0A7_HALNC Length = 348 Score = 193 bits (491), Expect = 9e-48, Method: Composition-based stats. Identities = 87/367 (23%), Positives = 156/367 (42%), Gaps = 38/367 (10%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 Y+ L FIWW+LIG+ +V+++I DG D+G G L + +ER ++ S+ W+ N+ W Sbjct: 11 YQWLTFIWWVLIGLFVVLYIILDGADLGSGI-YSLFNSDSEERGAIMASMAGTWDANETW 69 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L++AGGA+F +P Y + F + +++VL + R ++ ++ R R +WD G Sbjct: 70 LVVAGGAIFGTFPLAYGSLFHYLMIPLMVVLWGIIIRAVSLEFHHY--SKRSRALWDWGF 127 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 IGSLV G+ G L G F T + G LTPF +L G ++ L Sbjct: 128 GIGSLVTTFGAGVCLGAFLQG--FQMTTGQVPTFGGGALDFLTPFSILTGFTAVIAASLA 185 Query: 184 GGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPL 243 GG +L+ + + ++ + + + +W I Sbjct: 186 GGAYLRARFDRSTEIYAKALKWTDLMFYLALVAIMITVVWTFIQF--------------- 230 Query: 244 MKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTV---MAIYRGRPGWGFLMASLMQFG 300 +W + P W + + G T A R + + + F Sbjct: 231 ---------SWARDKWIGPYWWAYVIAGAIVLFATWSMRKASREQRDITAMIWLASIVFI 281 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 T TL+P+ +P + +T++D+ + +LS +L F+P++L Y + + Sbjct: 282 NFATMMATLYPWFVPGT------MTIYDAANPSNSLSAFSYAMLGFVPVMLSYNFYQAWV 335 Query: 361 MWGRMTT 367 R+ Sbjct: 336 FRARLHK 342 >UniRef50_A7I116 Cytochrome D ubiquinol oxidase, subunit II n=1 Tax=Campylobacter hominis ATCC BAA-381 RepID=A7I116_CAMHC Length = 368 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 80/382 (20%), Positives = 157/382 (41%), Gaps = 22/382 (5%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 YE L+ WW +I ++ +F+ F G LL +++ + +++NS+G WE Sbjct: 2 YENLQIYWWFIISLLAGIFVFMS-FVQGGQMLL-FSFKDEKNKDMIVNSIGKKWELTFTT 59 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L++ GGA FAA+P Y+ +F G Y + +L + ++++YR K + +K ++ + Sbjct: 60 LVMFGGACFAAFPLFYSTSFGGAYWVWMAILFCFIIQAVSYEYRKKENNFLGQKCYEIFM 119 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEY---LGSFWQLLTPFPLLCGLLSLGMV 180 +I + + G+A G F+ + V + L L PF L G + Sbjct: 120 LINGFLGIFLIGVALSTFFSGSEFSLDTRNFVAWKNPLRGLEALFNPFNFLLGFTLVFAA 179 Query: 181 ILQGGVWLQLKT-VGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGP 239 + G ++L + + + K+ A + ++ F+ W+ + V Sbjct: 180 RVGGSMYLINHINEDYMRKKIRNFLKKDAAVFVIFFIAFLVWISLKDGFCVE-------- 231 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVM--AIYRGRPGWGFLMASLM 297 +V ++ NF ++ ++ L + A + G F ++ Sbjct: 232 ----NGVVVTKKFHYILNFFNHYFIFFGLIISVLTALFGIYKGAFTKSIQGIWFWGIGVI 287 Query: 298 QFGVIFTAGITLFPFV-MPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLW 356 + + V PSS SSL++++++SS TL M I +F+P VL Y + Sbjct: 288 FAVTFLFFSLGMSGNVFYPSSADLNSSLSIYNASSSFYTLKTMAYIS-VFIPFVLAYIAY 346 Query: 357 SYYKMWGRMTTETLRRNENELY 378 + M ++ N Y Sbjct: 347 VWKNMDKTKMSKKELEKSNVAY 368 >UniRef50_A0Q8B4 Cytochrome bd-II terminal oxidase subunit II n=16 Tax=Francisella RepID=A0Q8B4_FRATN Length = 320 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 79/362 (21%), Positives = 151/362 (41%), Gaps = 47/362 (12%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW +I L++++I DGF +G+G L PL+ +D ++ I + + W+GNQ WL+ Sbjct: 3 LGLIWLAIIAFALLLYVILDGFALGMGILFPLL--DDHQKDIATSILLPTWDGNQTWLVF 60 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 A + +P +A F Y++ IL++ + R + F++R K + + K WD I Sbjct: 61 ALACFYGMFPIAFAYIFPKIYLSAILLVVMILLRGICFEFRLK-SSQKGIKNWDKLFFIS 119 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S V + G G L++G P F + G+ + L G Sbjct: 120 SFVATFLQGYIVGELIVGFPHNSFYNFG-------------FSAVTGITLIFGYSLLGAT 166 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 L LKT G + +++ K +++ + L+ G + + Sbjct: 167 RLILKTEGELFTKAKQLAKICCIILAVLMLVIGGMTPLYVK------------------- 207 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 ++N + +L LL L+ + I + ++ + + Sbjct: 208 ------LPLDNLYKMAILGELFLLTIISFLVLIKVIEAKNHALPYWLSVAIFILTYISML 261 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 +FP+++P +T + +S TL L+ +I +P++LLYT ++YY G+ Sbjct: 262 TLIFPYIIP------YQITYTQAQASDTTLIFTLIPAIIMIPLLLLYTSYAYYIFRGKTK 315 Query: 367 TE 368 + Sbjct: 316 EK 317 >UniRef50_A7ZG70 Cytochrome D ubiquinol oxidase, subunit II n=4 Tax=delta/epsilon subdivisions RepID=A7ZG70_CAMC1 Length = 374 Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats. Identities = 80/381 (20%), Positives = 157/381 (41%), Gaps = 14/381 (3%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 E L+ WW ++ ++ + + F G L+ + +++ ++ ++INS+G WE Sbjct: 4 LSLENLQIYWWFIVSLLGGLLVFMM-FVQGGQSLIFSLGKDELKKDMLINSIGRKWELTF 62 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 L++ GGA FAA+P YA +F G Y + +L + ++++YR K + + ++ Sbjct: 63 TTLVMFGGACFAAFPLFYATSFGGAYWVWLAILFCFIIQAVSYEYRKKPDNFLGARTYEI 122 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQ---LLTPFPLLCGLLSLG 178 L I + ++ G+A G F VE+ F L P+ L G+ Sbjct: 123 FLFINGSLGVILIGMAVSTFFSGSDFVLNEHNFVEWKTPFRGLEALSNPYLYLLGIAMFF 182 Query: 179 MVILQGGVWLQLK-TVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDAN 237 + + G ++L G ++ +L + FL W+ + + Sbjct: 183 LSRIGGCLYLMNNIADGEFIQNARKQLIINTVLFLPFFLGFLAWVLTKDGFAYNVNGVVS 242 Query: 238 GPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLM 297 + + +P A + V ++ + G F + + Y G G +A Sbjct: 243 LVAYKYAINLIEMPIAGILLLVGVLLVLVGIFQGAFTKSIRGIFAY----GVGVTLAVTA 298 Query: 298 QFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWS 357 F + G +P S SSLT+ +++SS TL +M + L +P+VL Y Sbjct: 299 LFLITGLNGTAFYP----SFSDLSSSLTIKNASSSHYTLGVMSYVSL-LVPVVLAYIFIV 353 Query: 358 YYKMWGRMTTETLRRNENELY 378 + + + T+ +N++ Y Sbjct: 354 WRAIDSKKITQDEIKNDHHAY 374 >UniRef50_C9Q1E8 Cytochrome D ubiquinol oxidase subunit II n=7 Tax=Prevotella RepID=C9Q1E8_9BACT Length = 408 Score = 190 bits (482), Expect = 9e-47, Method: Composition-based stats. Identities = 84/381 (22%), Positives = 161/381 (42%), Gaps = 8/381 (2%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 + YE L+ WW L+ ++ + + F G L+ + + ++ERR+V+NS G WE Sbjct: 28 LMSYEFLQHYWWFLVSLLGALLVFLM-FVQGANTLIFTLGKTENERRLVVNSTGRKWEFT 86 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 L++ GG FA++P Y+ +F G Y +++L S + ++++++ K+ + + + Sbjct: 87 FTTLVVFGGGFFASFPLFYSTSFGGAYWLWMIILFSFVIQAVSYEFQNKLGNILGARTFQ 146 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQ-LLTPFPLLCGLLSLGM 179 L+I ++ PV+ G A G F L LL L Sbjct: 147 TFLIINGVLGPVLLGGAVATFFNGSNFIVDKGNITTMAQPVISRWANASHGLDALLDLWN 206 Query: 180 VILQGGVWLQLKTVGVIHLRSQLATKRAALLVML-CFLLAGYWLWVGIDGFVLLAQDANG 238 V+L V+ + +G++++ + +A L +L + V L Sbjct: 207 VVLGVAVFFLARVLGLLYIINNVAHAPVVTRARKQLRLCTVVFLAFFLSFLVHLLLKDGY 266 Query: 239 PSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYR----GRPGWGFLMA 294 +P ++++ P +++N L I L+G L ++ R R W + Sbjct: 267 AYDPQTGIISMQPLKYLHNLTTMWYLAIVLLVGVASLLYGIVRTLRDANFNRGIWFGGVG 326 Query: 295 SLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYT 354 ++ V+ PS+ SSLT+ +S+ S+ TL+ M V+ L +P VL Y Sbjct: 327 VVLVVLVLLLCAGWNNTAYYPSNTDLQSSLTIANSSGSKFTLTAMSVVSL-LIPFVLAYI 385 Query: 355 LWSYYKMWGRMTTETLRRNEN 375 ++ + + TE N Sbjct: 386 FVAWRAIDRKPLTEEEIMNGE 406 >UniRef50_D2S1W8 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Halobacteriaceae RepID=D2S1W8_9EURY Length = 333 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 88/363 (24%), Positives = 153/363 (42%), Gaps = 48/363 (13%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW+ L+ IL +F+ DGFD G+G L + ER ++ ++ W+GN+VWL++ Sbjct: 17 LADIWFGLVFFILGMFLFLDGFDFGVGILFA-TRDDKHEREQLLAAITPFWDGNEVWLVV 75 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GGALFAA+P VYA FS Y+ M +L +L R LA + + D W+K W ++G Sbjct: 76 FGGALFAAFPAVYANLFSRHYLLMFAILGALILRGLAPEMYEQREDEPWQKWWGRAFIVG 135 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S P GI N LLG L+T ++ GL+ + + ++ G Sbjct: 136 SFTAPFFLGIFIANWLLGTT----------------ALITLPGIVVGLMLVALTVVDGVA 179 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 +L+LKT + + RA +L ++ +L +++ ++ L Sbjct: 180 FLRLKTRNELRDDVRTDGSRALVLYLILVVLTLGVVYITAPELRSALLSPLVVCLVVVNL 239 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 V + +A R F+ + + F ++ Sbjct: 240 VLT--------------------------GIYAVATSSNRYYEAFVANAGLVFTLVSIVA 273 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 ++P + + LT+ ++ S L L+IM + + LP++ LY Y G + Sbjct: 274 SLMYPHI-----DRVEGLTVEEAIVSTLPLNIMSIGAALLLPLIFLYFGVLYSVFSGPIK 328 Query: 367 TET 369 + Sbjct: 329 ADE 331 >UniRef50_A6W8I8 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W8I8_KINRD Length = 346 Score = 188 bits (477), Expect = 4e-46, Method: Composition-based stats. Identities = 93/372 (25%), Positives = 158/372 (42%), Gaps = 46/372 (12%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M + L +W+ + + V+F + +GFD G+G L PL+ R D ER + +VG W+GN Sbjct: 1 MTSWVDLPVLWFGVTVLAWVLFFVLEGFDFGVGFLGPLLGRTDAERGAALRTVGPVWDGN 60 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 +VWL+ A G FAA+P YAA SG Y+ MI +L L R +A ++RGK A W + D Sbjct: 61 EVWLVAAIGVTFAAFPDWYAALLSGLYLPMIALLLLLAVRGVAIEFRGKHDSASWHRRCD 120 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLR-VEYLGSFWQLLTPFPLLCGLLSLGM 179 A L SL+ +G G L+ G+ ++ S +L P+ +L G + + Sbjct: 121 AFLATSSLLLAGTWGAVLGALVTGLALDPGGEVHGGGLSRSLAPILGPWAVLGGFAGVLL 180 Query: 180 VILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGP 239 + G +L L+T G + R++ A +++ L Sbjct: 181 TTVHGATFLALRTTGPVRARARRLAVATAPALVVIALALFIAAGHAAVAAAAALLAL--- 237 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299 +A +RG F S+ Sbjct: 238 --------------------------------------AAVAAWRGAEALAFAATSVAVA 259 Query: 300 GVIFTAGITLFPF----VMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTL 355 G + ++PS++S + +TL + +S+ L ++ V ++ LP V++Y + Sbjct: 260 GSVVAVFTAHLADGSWVLLPSTLSSANDVTLRAAAASEGALQLITVAGVVVLPAVVVYQV 319 Query: 356 WSYYKMWGRMTT 367 WSY+ R++T Sbjct: 320 WSYWVFRQRVST 331 >UniRef50_D2B3F0 Cytochrome d ubiquinol oxidase subunit II n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B3F0_STRRD Length = 332 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 98/348 (28%), Positives = 153/348 (43%), Gaps = 33/348 (9%) Query: 20 VVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVY 79 + + GFD G LLPL R++ RR V+ ++G ++ GN+VWL+ A G LF A+P + Sbjct: 14 TGYYVLAGFDYGAQLLLPLAGRDEGGRRRVLAALGPYFFGNEVWLVAAAGVLFGAFPLLE 73 Query: 80 AAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFG 139 SG Y+ ++L+L L A RG+ A R++WD +V G +P + G G Sbjct: 74 GTLLSGLYLLVVLLLLGLVAGKAAVQLRGRSQSAAARRVWDVLIVAGGAIPAFLMGTLIG 133 Query: 140 NLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLR 199 LL GVP ++ S +L PF LL G+ + ++I GG +L L+T G + R Sbjct: 134 LLLAGVPLRGD----HGFVLSPGDVLHPFVLLAGVTGVLLLIGHGGAFLSLRTTGEVASR 189 Query: 200 SQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFV 259 + A + A W V A P LVA Sbjct: 190 ADSAARSA-------------LTWAAAAVVVTFAAGLALGVRPPNPLVATAAT------- 229 Query: 260 ESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVS 319 +L PL A+ GRPG F + + AG++ FP+++ SS Sbjct: 230 ---------VLLAVLPLAGRRALRYGRPGRAFTATAAAVALPVPLAGLSTFPYMLVSSAD 280 Query: 320 PISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTT 367 P SLT + + TL + ++ LP++L Y + ++ GR+ Sbjct: 281 PRHSLTFTEVAADAATLETLTAFGVVLLPVMLGYQAFGWWAFRGRVEA 328 >UniRef50_B3QK51 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Rhodopseudomonas palustris RepID=B3QK51_RHOPT Length = 341 Score = 187 bits (475), Expect = 6e-46, Method: Composition-based stats. Identities = 72/351 (20%), Positives = 135/351 (38%), Gaps = 35/351 (9%) Query: 17 VILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWP 76 +++ ++++ DG D+G+G L P R+ +R ++ ++ W+GN+ WL+L G L AA+P Sbjct: 19 IVVGLYVVLDGVDLGVGILFPFAPRS-SDRDAMMTTLEPFWDGNETWLVLGGMVLLAAFP 77 Query: 77 RVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGI 136 +A FYV + L+L L R +AF++R + +W GS + G+ Sbjct: 78 LAFAILLPAFYVPLCLMLFGLVIRGIAFEFRSQRGSFEI--VWSMTFAAGSFIAAFCEGV 135 Query: 137 AFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVI 196 G + + G + L F + GL + L G WL KT G Sbjct: 136 VLGAFV----GQSITVSNGAFAGGPFDWLGLFSIATGLGVVAAYGLLGACWLVWKTGGST 191 Query: 197 HLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMN 256 + L LL W V Sbjct: 192 QNFGRELMLPTLLCAGGAILLVSVWT----------------------PFVKPQIAERWF 229 Query: 257 NFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPS 316 + + L P++ + ++ + R ++ L+ + G +++P +P Sbjct: 230 VWPDMLWLAPLPIIAVLAGIGILLTRWSEREWSPLALSLLLFITSLAGLGASVWPEAIP- 288 Query: 317 SVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTT 367 +T+W ++S T I+ ++I +PI+L Y + Y+ G+ Sbjct: 289 -----GVMTIWQASSMHRTQVIVAAAIVIIVPIILAYIGYGYWLFRGKTKP 334 >UniRef50_C0G2G6 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Natrialba magadii ATCC 43099 RepID=C0G2G6_NATMA Length = 331 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 92/364 (25%), Positives = 159/364 (43%), Gaps = 49/364 (13%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 E+L +W+ L+ L V+++ DGFD G+G L ++ +R +++ + G W+ N+VWL Sbjct: 13 ESLPEVWFGLVVFALGVYLLLDGFDFGLGIL--FAEADESDREVLLAAFGPLWKANEVWL 70 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 +L G LFA +P VYA S Y+ + +L +L R L R + D W + WDA V Sbjct: 71 VLFGTVLFAGFPAVYANILSRHYLLVFAILLALSLRGLGSKLREERDDEEWVRFWDACFV 130 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQG 184 GS+ P + G+ + +LG A PL+ G+ + + I+ G Sbjct: 131 AGSIASPFLLGVFVASWVLGEASALAIA----------------PLVVGVTVVALSIVLG 174 Query: 185 GVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLM 244 +L +KT G + ++A + + F+L L+V G Sbjct: 175 AAFLGVKTRGELRDHVTRRGRQATGIYVGLFVLTAITLFVQYPG---------------- 218 Query: 245 KLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFT 304 ++ + S + + TV A +R R FL A+ + + Sbjct: 219 ----------LHTVLLSASTAAIVVATVVFSIATVFAAFRERYHAAFLGAAGLAAAFVVF 268 Query: 305 AGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 G L+P ++ P + L++ D+ S L L++ + IF+PI++ Y L+ Y G Sbjct: 269 VGTLLYP-----AIDPAAGLSVRDAVVSPLPLNMTTIFAAIFMPIIVGYFLFLYSLFSGP 323 Query: 365 MTTE 368 T E Sbjct: 324 ATPE 327 >UniRef50_Q03D44 Cytochrome bd-type quinol oxidase, fusion of subunit 1 and subunit 2 n=16 Tax=Bacteria RepID=Q03D44_LACC3 Length = 829 Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats. Identities = 84/360 (23%), Positives = 147/360 (40%), Gaps = 34/360 (9%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M L+ I+ +I L++F + DG D G G V + +R+ ++ G W GN Sbjct: 491 MPSLSNLQVIFLGIISTELMLFFVLDGADFGAGMATFFVGDDLSKRQQIMKVTGPVWGGN 550 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 + W + A +FAA+P Y+A SG+Y + L+L L FR ++FDYR + + + WD Sbjct: 551 ETWAVTAFAVMFAAYPGWYSALTSGYYPLIFLMLFFLIFRGVSFDYRNQWHSRHYNRFWD 610 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 L IGSL+PP + GI F + + GVP S +LTPF +L G+L++ Sbjct: 611 WALFIGSLMPPFLLGIIFSSTVSGVPIR-----NGFVYASMGDILTPFSILGGILAVLFS 665 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 + G + K + +A KR ++ +L L F Sbjct: 666 LNVGLNRVIKKVTEPVATSLTVALKRTTWILYPALVLFAILLPFNTQFFTNRPVIVTLLL 725 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 L+ + V AI + R F ++ Sbjct: 726 ILLVAFLGVETW----------------------------AISQQRRRVAFWLSVGTMAS 757 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 I+T + +FP ++ + +S+T +TS ++L + + +++ +Y+ Sbjct: 758 FIYTIFLGVFPTLIVGRTA-GTSITALTATSGPVSLLWTAWLFGFTIILMVGLQATAYHL 816 >UniRef50_B4RY64 Quinol oxidase, subunit II n=3 Tax=Gammaproteobacteria RepID=B4RY64_ALTMD Length = 335 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 86/366 (23%), Positives = 143/366 (39%), Gaps = 39/366 (10%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 E L I+ L+G+ ++++ I DG+D+G+G L+P R + R +I S+G +W+ N+ Sbjct: 5 VSAEMLGNIYVGLLGLSVMLYAILDGYDLGVGVLIP--PRTEAFRDDMIASIGPYWDANE 62 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 WL+LA G L A+P ++ Y+ +L L R +AFD+R K+ + RK WD Sbjct: 63 TWLVLAIGLLLIAFPEAHSEFLQTLYLPATFMLLGLILRGVAFDFRAKVVQVKKRK-WDL 121 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 GSL+ + G G + G+ F LL Sbjct: 122 VFKYGSLLTTLAQGYMLGIYVTGLRTDI--------------WAQGFALLAAFGVTAAYA 167 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 G WL LKT G + ++ +R ++ + + D L Sbjct: 168 FIGSCWLILKTEGELQQKAYYWARRGLGVLAVGIIAVSIANLTLHDDVRAL--------- 218 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 L W P+ L L + F +A L+ Sbjct: 219 -------WLSAPWGYVLFAIPLASFALLALCGVLLKKLPDANGKGEWLPFFIALLVFLLC 271 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 I+ +PF++P +T+ ++ S +L +LV V+I +PI+L YT Y Sbjct: 272 FSAFAISYYPFIIP------GQMTVSEALSDANSLRFLLVGVVIVVPIILAYTAMVYKIF 325 Query: 362 WGRMTT 367 G+ Sbjct: 326 SGKSEK 331 >UniRef50_B9Z1X7 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z1X7_9NEIS Length = 336 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 87/359 (24%), Positives = 142/359 (39%), Gaps = 35/359 (9%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 L ++ L+ + L+ ++I DG+D+G+G LLPL A+ ER +I S+G W+ N+ WL+ Sbjct: 6 WLPVVFAGLMAISLLAYVILDGYDLGVGILLPLGAK--AERDTMIASIGPFWDANETWLV 63 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 L G L A+P + Y+ + L+L L R +AFD+R K D + W+A Sbjct: 64 LGVGLLLVAFPLAHGIILGELYLPVALMLLGLILRGVAFDFRVKARDPH-QPWWNAAFAA 122 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GSL+ + G+ G L G F LL G+ L G Sbjct: 123 GSLLAALSQGVMLGRYLTGFAPGAAAWG--------------FALLAGVGLAAAYALLGA 168 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 WL +KT G + R+ +RA L L + Sbjct: 169 GWLIMKTRGALQARAIGWARRALYGTGLAVLAVSIATPLASSHIAAKW------------ 216 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 V + + S L++ L A F + + Sbjct: 217 FVLPDFLLLLPLPLGSLALFVLLALSLPRLARRQAAGNDTLCWLPFAATVGIVLLSFWGL 276 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 ++FP ++ LT+W + SS LS++L + LP ++ YT+++Y WG+ Sbjct: 277 AYSVFPDIVI------GRLTIWQAASSPEALSVILWGAAVVLPTIVGYTVYAYRVFWGK 329 >UniRef50_B9L7C1 Cytochrome bd oxidase subunit II n=2 Tax=Nautiliaceae RepID=B9L7C1_NAUPA Length = 398 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 86/392 (21%), Positives = 170/392 (43%), Gaps = 27/392 (6%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 + L+F WW+++ V+ +F+ F G L VA+++ E R ++NS+G WE Sbjct: 12 HFYLQFYWWIIVAVLGGLFLFMT-FVQGGQTLFH-VAKDEIEERGILNSLGRKWELTFTT 69 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L++ GGAL+AA+P Y+ +F G Y +L+L + + ++++Y + + + + L Sbjct: 70 LVMFGGALYAAFPLFYSVSFGGAYWVWMLILFAFVLQAVSYEYMNRTGNLIGKGAYKFFL 129 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLT--------------PFP 169 +V V+ G A G G F + P R+ G+ F Sbjct: 130 YFNGVVGIVLIGAAVGTFFTGSNFTYDPATRILEWGTAKDGFNLRGLEAAIDFKHGAWFN 189 Query: 170 LLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGF 229 L G+L + + G +WL + R +V CF++ L + + G Sbjct: 190 LAMGVLVFAVARILGALWLI---NDLDEKDFADVVARLRAVVKRCFVVLLVALVIVLYGL 246 Query: 230 VLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVM----AIYRG 285 + L A +P V+++ G ++ N + + + L + + Sbjct: 247 ITLKGYAYDIHDP-KGTVSLVAGKYLQNLLAFGAIQLIVFLVGVVLFVLGVFQSGFGSSR 305 Query: 286 RPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLI 345 + W + +++ ++FT PS SSLT+ +++ S+ TL +M + + Sbjct: 306 KGIWAAGLGTVLIGIIVFTLAGLNGTAFYPSYADLQSSLTIQNASGSKYTLMVMAWVS-V 364 Query: 346 FLPIVLLYTLWSYYKMW--GRMTTETLRRNEN 375 +P VL Y ++ +Y+M G +T E + +++ Sbjct: 365 AVPFVLGYIIYVWYQMKKQGPITKEEILTDDH 396 >UniRef50_A6Q1A5 Cytochrome bd oxidase subunit II n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q1A5_NITSB Length = 372 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 86/379 (22%), Positives = 166/379 (43%), Gaps = 21/379 (5%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 TL+ WW ++ ++ +F+ F G L L N++++ +++N++G WE L+ Sbjct: 9 TLQEYWWFIVSLLGGLFLFLT-FVQGGQTKLGLAG-NEEQKDLIVNALGRKWELTFTTLV 66 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 L GGALFAA+P YA +F G Y + +L S + +A++YR K + +K+++ L + Sbjct: 67 LFGGALFAAFPLFYAVSFGGAYGLWMAILFSFIIQAVAYEYRKKPNNFFGQKVYELFLFL 126 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLG---SFWQLLTPFPLLCGLLSLGMVIL 182 V + G+A +L G F + +LG L PF +L GL+ + + L Sbjct: 127 NGTVGIFLIGVALASLFTGAAFKLDDMKHMTWLGSMRGLEALGNPFNILFGLMMVFLARL 186 Query: 183 QGGVWLQLKTVG-VIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 ++ + +++ A K + ++ FL W+ + Sbjct: 187 NANLYFMFILDDPELVEKAKKAIKTDFAIFLVLFLAVAGWIL------------SMSGVG 234 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 V+ ++NNF+E P + ++G L V+ +G + ++ + Sbjct: 235 YEQNKFFVVAHKYLNNFLEMPFVLGAFVVGVGLLLGAVVMALKGVKKAFWFSSTAITLVG 294 Query: 302 IFTAGITLF--PFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359 + + + PS SSLT+ +S+ S++TL M + L +P V+ Y + + Sbjct: 295 LSLLLVLGYNHTAYYPSIADIGSSLTIENSSGSRVTLITMSYVSL-MVPFVVGYIAYVWR 353 Query: 360 KMWGRMTTETLRRNENELY 378 M + +E N+ Y Sbjct: 354 LMDSKPLSEDEVENDVMSY 372 >UniRef50_A6LFA4 Cytochrome D ubiquinol oxidase subunit II n=13 Tax=Bacteria RepID=A6LFA4_PARD8 Length = 383 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 76/380 (20%), Positives = 153/380 (40%), Gaps = 9/380 (2%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 Y L+ WW L+ ++ + + F G LL + + + ++++++NS G WE Sbjct: 5 YILLQHYWWFLVSLLGALLVFLL-FVQGGQSLLFTIGKTEIQQKMLLNSTGRKWEFTFTT 63 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L+ GGA FA++P Y+ +F G Y +L+L + ++++Y+ K + +K + L Sbjct: 64 LVTFGGAFFASFPLFYSTSFGGAYWVWMLILLCFVIQAVSYEYQAKKGNLLGKKTYQVFL 123 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQ-LLTPFPLLCGLLSLGMVIL 182 +I + P++ G A G F + + P+ L L + L Sbjct: 124 MINGIAGPILLGTAVATFFNGAEFIVNKEQLTDVAMPVISTWANPWHGLEAALVFWNLCL 183 Query: 183 QGGVWLQLKTVGVIHLRSQLA-TKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 V+ + + +++ + + + A +L + + L N Sbjct: 184 GLAVFFLARALALLYFINNIDDPEIVAKSRKQLIPETILFLVFFLTFLIRLLLVDGFAVN 243 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTV---MAIYRGRPGWGFLMASLMQ 298 P V + P + N +E P++ L+G L + + R G F A + Sbjct: 244 PDTGEVFMQPYKYFMNLIEMPIVLAVLLIGVVGVLFGIGKTIFSKTWRKGIWFAGAGTVL 303 Query: 299 FGVIFTAGITLF-PFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWS 357 + PS SSLT+ +S SS TL +M + I +P VL Y ++ Sbjct: 304 TVLALLLCAGWNNTAYYPSLADLQSSLTIQNSCSSPFTLKVMSYVS-ILVPFVLAYIFYA 362 Query: 358 YYKMW-GRMTTETLRRNENE 376 + + ++ ++ ++ + Sbjct: 363 WRALDLHKINSKEMQEGGHT 382 >UniRef50_UPI000038268B COG1294: Cytochrome bd-type quinol oxidase, subunit 2 n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI000038268B Length = 226 Score = 175 bits (444), Expect = 3e-42, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 91/187 (48%), Gaps = 8/187 (4%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 L +W L+ + + ++++ DGFD+G+G L AR + R ++ SV W+GN+ WL+ Sbjct: 14 WLPLVWAGLLALAVAMYVVIDGFDLGVGILF-TAARPGNWRDRMMLSVAPIWDGNETWLV 72 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 L GG LFA + YA Y+ +IL+L +L FR +AF++R K R R +WD Sbjct: 73 LGGGGLFAVFSVAYAILLPALYLPLILMLIALIFRGVAFEFRFKAE--RSRAVWDNAFHY 130 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GSL G+ G + G + LTPF ++ G+ + L Sbjct: 131 GSLTATFAQGMVLGAFVQ-----SFQTEGRSLSGGTLEWLTPFSVMTGIGLVSGYRLLEA 185 Query: 186 VWLQLKT 192 W +KT Sbjct: 186 NWCVMKT 192 >UniRef50_C6NVA4 Cytochrome d ubiquinol oxidase, subunit II n=4 Tax=Gammaproteobacteria RepID=C6NVA4_9GAMM Length = 362 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 77/378 (20%), Positives = 154/378 (40%), Gaps = 47/378 (12%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 + +L WW+L+G+ V++++ DG D+G G L+ N+++R V+ S+ W+ N+ W Sbjct: 11 HSSLGTFWWILLGLFFVIYIVLDGADLGAGV-FSLMLENENDRAAVMASMAGTWDANETW 69 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L++AGG +F A+P VY A F+ + ++ L + R +AF++ + + W Sbjct: 70 LVVAGGVIFGAFPLVYGATFNYLMIPLMFALWGIISRAVAFEFH--VHAKGSKAFWGKMF 127 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRV------------EYLGSFWQLLTPFPLL 171 +GSLV G+A G LLG P + + + G+ L+PF + Sbjct: 128 GLGSLVAAFFAGVALGATLLGFPMSKGNAQGIQVANDPFANTVPHFSGNALSFLSPFSIW 187 Query: 172 CGLLSLGMVILQGGVWL--QLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGF 229 G+ ++ L G ++L + K I+ ++ + L ++ ++ W + + Sbjct: 188 TGIAAVIAGGLAGTLYLCARFKQDDPIYQKAYAWATTFSYLALVAVVITLVWSYAIMPDA 247 Query: 230 VLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGW 289 I L F +MA R Sbjct: 248 AKWTGSGWFGW------------------------LILLLAILFSAFRMMMAHAAHRDFP 283 Query: 290 GFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPI 349 L + + T FP+++P + T+ + L+I+ + + F+P+ Sbjct: 284 ALLWCGAIVVLMWGGMWATNFPYIVPQT------WTIAAGANPANDLAILTLFMTGFVPV 337 Query: 350 VLLYTLWSYYKMWGRMTT 367 +++Y + + R+T Sbjct: 338 MIMYNAYQIWVFRHRLTH 355 >UniRef50_C4DN93 Cytochrome d oxidase cyd, subunit II n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DN93_9ACTO Length = 338 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 76/348 (21%), Positives = 135/348 (38%), Gaps = 31/348 (8%) Query: 22 FMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAA 81 + + G D G L + ++ RR + ++G + GN+VWL+ G LF A+P + Sbjct: 18 YFVLGGLDYGAQVLRLWLGGDESARRSTLGALGPFFFGNEVWLVGFAGVLFGAFPFLEGK 77 Query: 82 AFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNL 141 SG Y + +L L A RG+ R R++WD G LVP +G+ L Sbjct: 78 LLSGMYPLFLAILIGLVVGKTAVQLRGRADTVRGRRVWDVLAFAGGLVPAWSWGMLVALL 137 Query: 142 LLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQ 201 L GVP + + QL PF L CG S + + G +L + G ++ Sbjct: 138 LRGVPIGAD----GHFTLTGAQLGEPFVLACGAASTALFVTHGAAFLAARVRGAAAGAAR 193 Query: 202 LATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVES 261 R ++ ++ L AG + A + F Sbjct: 194 ALLPRLGVVTVVASLGAGG---------------------------IGVASAVDDGFAAP 226 Query: 262 PVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPI 321 L + ++A RG + G+ +P ++ S+VS Sbjct: 227 AAAVAVGALLPIAVVAAMVASRRGWAKTAVTATGVAALVPALLPGVAHYPRLLVSTVSER 286 Query: 322 SSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTET 369 S+T+ + + TL ++ ++ +P++LLY WS++ R+ + + Sbjct: 287 YSVTVSHAAADVETLKLLSAFGIVVVPVILLYQGWSWWAFRERVDSGS 334 >UniRef50_B9P917 Predicted protein n=7 Tax=cellular organisms RepID=B9P917_POPTR Length = 462 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 82/148 (55%), Positives = 107/148 (72%) Query: 20 VVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVY 79 + F ++DGFD+G LLPL AR D ERR+VINS+G WEGNQVWLIL GGA+FAAWP++Y Sbjct: 234 IAFAVTDGFDLGAAALLPLAARTDVERRVVINSLGPVWEGNQVWLILGGGAIFAAWPQLY 293 Query: 80 AAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFG 139 A +FSGFY+AM L +L RP+AF +R K + WR WDA L + +VP ++FG+A G Sbjct: 294 AVSFSGFYLAMFAALVALILRPVAFKFRSKREEPAWRARWDAVLCMAGVVPALIFGVALG 353 Query: 140 NLLLGVPFAFTPQLRVEYLGSFWQLLTP 167 N+L GVPF P +R+ Y G+F+ LL P Sbjct: 354 NVLQGVPFRLAPDMRIYYEGTFFGLLNP 381 >UniRef50_C7NNR2 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Halobacteriaceae RepID=C7NNR2_HALUD Length = 338 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 79/364 (21%), Positives = 144/364 (39%), Gaps = 44/364 (12%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 ++L IW+ +I L ++++ DGFD GIG L +D +R ++ + G W+ N+VWL Sbjct: 15 DSLPEIWFGVIMFALAMYIVLDGFDFGIGMLYA-TREDDHDRETLLAAFGPIWDANEVWL 73 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 I G L AA+P VY+ + Y+ + + +L FR + + R + D W++ D V Sbjct: 74 IAFGTMLLAAFPDVYSRLLADNYLIALGFVLALLFRGVGPELREQREDESWQRACDWSFV 133 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQG 184 GS + P +FG+ G+ + V P +L G+ + + + G Sbjct: 134 GGSALAPFLFGVLAGSWVFSVGAVSLP-----------------AILTGVGLVAVSAVTG 176 Query: 185 GVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLM 244 +L KT + + +L + +L L + S P + Sbjct: 177 AAFLAAKTGPALAGEMRD----LGILATVAYLAGVVVLLAVVIVTDAGGTAGTILSIPGI 232 Query: 245 KLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFT 304 +V L L ++ R + A + + Sbjct: 233 AIVG---------------------LSVVAGLGGIVLALRDSYRAWLVSALALPTLLSAL 271 Query: 305 AGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 + L+P + P++ S + LT+ + S L L++ V+ L +VL Y + Y G Sbjct: 272 VALLLYPAIYPATAS-GAELTVETAVVSPLALNLTTVLGFPVLVVVLWYFKFLYGVFSGP 330 Query: 365 MTTE 368 + E Sbjct: 331 IEAE 334 >UniRef50_A8V528 Beta and gamma crystallin:Cytochrome bd ubiquinol oxidase, subunit II n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V528_9AQUI Length = 242 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 70/261 (26%), Positives = 119/261 (45%), Gaps = 30/261 (11%) Query: 109 KIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPF 168 K W+ WD +G+ VP ++FG+A GN +LG+P + Y G+F QLL P Sbjct: 6 KKESKTWKAAWDIAYWVGNTVPALLFGVAVGNAVLGIPID----EKGVYHGTFIQLLNPT 61 Query: 169 PLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDG 228 +L G +SL M ++ G +L +KT G ++ + + +LA +++ Sbjct: 62 AVLMGFVSLFMYLMHGTAYLLIKTEGKPFEFAKKGAVVGFIGFVASLILADFFI------ 115 Query: 229 FVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRG-RP 287 + NF + P+ WI P L +L + + Sbjct: 116 -------------------IAIKPTLFLNFFDYPLFWIAPFLMILGLVLYFKYLVVDEKY 156 Query: 288 GWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFL 347 + L G + T + +P + SS+ +LT+W+S SS LTL+IML+ LIFL Sbjct: 157 NKVIYGSILTILGTVLTIALASYPVFIHSSIDEKYNLTIWNSASSDLTLTIMLISTLIFL 216 Query: 348 PIVLLYTLWSYYKMWGRMTTE 368 P+++ YT++ Y G+++ E Sbjct: 217 PLIIGYTVYVYRVFKGKVSAE 237 >UniRef50_Q2KVX4 Putative cytochrome oxidase D ubiquinol oxidase,subunit II n=5 Tax=Bordetella RepID=Q2KVX4_BORA1 Length = 348 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 71/362 (19%), Positives = 149/362 (41%), Gaps = 45/362 (12%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 + ++ L+ +++ ++ DGFD+G+G LL + +ER +++ + + N+ W + Sbjct: 19 WMPMVFMGLMLLLIAAGIVLDGFDIGVGILLQVAP--AEERGRMMSLLSPWRDANEFWPL 76 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 L G +A+P + A Y + L++ + R ++F++R + + + W G Sbjct: 77 LGIGLFGSAFPFAWGAIMGKLYGPLTLMVLGIVLRSVSFEFRIRASTEV-KPRWIFGFWA 135 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GSL+ + G+ G A Q Y F L GL ++ L G Sbjct: 136 GSLLAAIGQGMVLGR------IATDYQSDAGY--------GWFSLFVGLCAVAAYALLGA 181 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 WL ++ G + R+ + W G+ + AN Sbjct: 182 CWLAMRVDGELQRRAASWARH-----------GIRWTAAGMVAIAVTLGLANAG------ 224 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCP--LLTVMAIYRGRPGW-GFLMASLMQFGVI 302 + + + +W+ LLGF LL + R W F++ L+ ++ Sbjct: 225 --IFYKWSNAAHLGAAAGVWVAMLLGFVAAEMLLARLPGKADRLAWLPFVLCVLLYLLML 282 Query: 303 FTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMW 362 + FP+++ + +T+WD + + + ++L V+I P+VL++ + +Y ++ Sbjct: 283 AGLAYSFFPYLI------LDDMTIWDGSGALGSSRLVLAGVVIGGPVVLVFNILAYRSVF 336 Query: 363 GR 364 G+ Sbjct: 337 GK 338 >UniRef50_B0R8N6 Cytochrome d ubiquinol oxidase subunit II n=2 Tax=Halobacterium salinarum RepID=B0R8N6_HALS3 Length = 331 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 78/364 (21%), Positives = 143/364 (39%), Gaps = 50/364 (13%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 ++L +W+ + L ++++ DGFD GIG L ++ ER + + G W+ N+VW+ Sbjct: 14 DSLPEVWFGAVVFALGMYIVLDGFDFGIGMLYA-TRTDEHERETFLAAFGPVWDANEVWI 72 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 + G L AA+PRVY+ + Y+ + + +L FR L + R + D RW++ D V Sbjct: 73 VAFGTMLLAAFPRVYSRLLADNYLLALGFVVALVFRGLGPELREQREDERWKRYTDYAFV 132 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQG 184 GS+ P++ G+ G L + G+ + +L G+ + + I+ G Sbjct: 133 GGSVFAPLLLGMLAGRWL--------------FAGATLPV-----VLTGVGLVAVSIVTG 173 Query: 185 GVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLM 244 +L KT + + A + + ++ + G A Sbjct: 174 AAFLAAKTDSGLASELRSYGVGATVAYLGGVVVLLGTVVATDAGGAASA----------- 222 Query: 245 KLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFT 304 V S + L L + RGR A + + Sbjct: 223 --------------VLSLPVAAVVALSIVAGLGGSVLARRGRYRAWLASALALPTLLTLL 268 Query: 305 AGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 + L+P V P + L + ++ S L L+++ V+ L +VL Y + Y G Sbjct: 269 VAVLLYPTVYPPT-----GLLVREAVVSPLALNLVTVLGFPVLLLVLWYFKFLYGVFSGP 323 Query: 365 MTTE 368 + E Sbjct: 324 IEGE 327 >UniRef50_C6DYH0 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Geobacter RepID=C6DYH0_GEOSM Length = 349 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 65/360 (18%), Positives = 127/360 (35%), Gaps = 39/360 (10%) Query: 12 WLLIGVILVVFMISDGFDMGIGCL--LPLVARNDDERRIVINSVGAHWEGNQVWLILAGG 69 +++ L+++ + G D G G L R ++R + N++G WE N VWLI Sbjct: 9 AMVLVAGLLMYALFGGADFGGGIWTALAFGPRAREQREALFNAIGPVWETNHVWLIFVIV 68 Query: 70 ALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA-GLVIGSL 128 LF A+P + F ++L L + FR AF +R + + A I S+ Sbjct: 69 TLFTAFPAGFGNLFIVLMTPLVLALVGINFRGAAFAFRHFGRELKKETPVSARVFEIASV 128 Query: 129 VPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWL 188 + P G+A G ++ L F LL G++ + + +++ Sbjct: 129 LTPFTLGLAVSATAAGRIVIAGRMPTEQFS----DWLNSFTLLGGVVGMAICAYLAPIYM 184 Query: 189 QLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVA 248 ++ G + + + A L + + L F ++ Sbjct: 185 TVRVTGELREDFRKESLAAGLALGILTSLMIPLAHYQAPLFAERLFNS------------ 232 Query: 249 VLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGIT 308 +F +L ++T ++ R W L+A + Sbjct: 233 --------------WPMLFVMLAILAGVVTESLLWLRRYFWAQLIAGATIVFTMAGFVAA 278 Query: 309 LFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTE 368 L P ++ LTL + + TL L ++ I I++ ++ Y+ G + + Sbjct: 279 LNPDILI------GQLTLRAAAAPHPTLVAFLAVLPIGALILVPSLVYLYWTFRGEPSAD 332 >UniRef50_C4DV22 Cytochrome d oxidase cyd, subunit II n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DV22_9ACTO Length = 317 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 74/356 (20%), Positives = 142/356 (39%), Gaps = 48/356 (13%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 + ++++L+G + + G+D G+G LL L R D ERR+++ ++G + GN+VWL+ Sbjct: 1 MAELFYVLLGAVFAGYFALAGYDYGVGVLLRLCGRTDTERRLILGALGPFFLGNEVWLVA 60 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 G L AA+P A +G Y A+ ++ ++ A R + A R +WD +V Sbjct: 61 GLGLLLAAFPLAEGALLTGLYPALFPLIAAIVLFTAAVQIRSRATFA--RPLWDLLIVGS 118 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 + + +G +FG +L G+P F P P++ G L+ + + G Sbjct: 119 AALISFGWGASFGLVLQGMPVRFG----------------PLPIITGALTTALFTMHGAS 162 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 L ++T I R+ L R ++ + A V Sbjct: 163 LLAVRTPDPIRGRAALIGSRMTFSAVVLVIAAALTAAVN--------------------- 201 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 + + + I L L + R RPG + + A Sbjct: 202 --------AHAVNQPVIAAIGALALIAVILASQRLRRRNRPGLALIATGTAATLPMIIAA 253 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMW 362 ++P++ + SLTL + ++ +L +L + LP++L + +++ Sbjct: 254 AAMYPYLYVD-LDAAHSLTLTQAVAANSSLDFLLATAVPVLPVLLGFQAATWWIWR 308 >UniRef50_C6XT47 Cytochrome bd ubiquinol oxidase subunit II n=7 Tax=Bacteroidetes RepID=C6XT47_PEDHD Length = 339 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 66/359 (18%), Positives = 136/359 (37%), Gaps = 36/359 (10%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDD--ERRIVINSVGAHWEGNQ 61 Y + F+W ++ ++++ G D G G + + A+ + R+ + ++G WE N Sbjct: 3 YVVIVFLWTAIL-----LYILLGGADFGAGIIELMTAKTNKAKTRKTMYKAIGPIWEANH 57 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIA-DARWRKMWD 120 +WLI+A LF +P++Y ++ ++ +L + R AF +R A +K++ Sbjct: 58 MWLIIAIVILFVGFPKIYTTISVYLHIPLVCMLLGIIARGTAFVFRNYDAVKDDMQKIYT 117 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 V SL+ P GI + + G P + L F + G+ ++ + Sbjct: 118 PIFVYSSLITPFFLGIIAASSVSG---QIDPSANNFLSAYIFSWLNWFSVAVGIFTVSIC 174 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 +++ +T R K + ++ F A ++ +G L + Sbjct: 175 GFLATIFIIGQTDNDG-DREHFVGKARRTIFIVMFCGALVFIAAYSEGIPLASWIFGDTP 233 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 I + L+ A+ + +P L+A Sbjct: 234 G-----------------------LIAIIAASISLLVMFYALKKDKPILLRLLAGFQVTM 270 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTS-SQLTLSIMLVIVLIFLPIVLLYTLWSY 358 ++F A T FP ++ SL + + +L L+I IF+ L+Y ++ + Sbjct: 271 ILFAATYTHFPDIVLLKNGENLSLLTHQGQARTIASLGYALLIGSIFILPALVYLIYIF 329 >UniRef50_C6VWT6 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VWT6_DYAFD Length = 341 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 60/365 (16%), Positives = 133/365 (36%), Gaps = 39/365 (10%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDE--RRIVINSVGAHWEGNQ 61 Y + ++W ++ ++++ G D G G + ++ + + R+ + +++G WE N Sbjct: 3 YIVITYLWASIL-----LYLLLGGADFGAGIIELFTSQKNKQVTRKTLYSAIGPIWEANH 57 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIA-DARWRKMWD 120 +WLI+A LF +P +Y+ ++ + ++L + R AF +R A + +++ Sbjct: 58 MWLIIAIVILFVGFPVIYSTMSVNLHIPLTVMLIGIIARGTAFTFRHYDAVVDDMQHLYN 117 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 + S + P+ GI G+ + G P R + L F + GL ++ + Sbjct: 118 TIFAVSSFITPLFLGIIAGSAVSG---HIDPSARSFADAYIFSWLHWFAITVGLFTVSIC 174 Query: 181 ILQGGVWLQLKTVGV-IHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGP 239 V+L +T LR + + ++C L W + Sbjct: 175 GFLASVYLIGETKVEHERLRFAHKAQFFNIAAVVCGALVFVAAWFEHIPLIDWV------ 228 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299 + + I L + +Y+G+ +A Sbjct: 229 -------------------FGNWIGRIAILSATLSLIWMWTLLYQGKIRLLRPLAGFQVT 269 Query: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359 ++ T FP ++ SLT + + T+ + +L+ ++L + Y Sbjct: 270 MILLTTTFRHFPNIVVLKGGGYLSLT--EHAGHEKTVEALGWALLLGSILILPALFYLIY 327 Query: 360 KMWGR 364 + Sbjct: 328 SFQKK 332 >UniRef50_UPI0001B55F87 cytochrome bd-type menaquinol oxidase subunit II n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B55F87 Length = 329 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 81/338 (23%), Positives = 141/338 (41%), Gaps = 42/338 (12%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDE--RRIVINSVGAHWEGNQVWL 64 + IWW ++G++L + G+D G+G LLP +AR+ DE +R V+ +VG + N+VWL Sbjct: 1 MVTIWWGVLGLLLGGYFALAGYDYGVGMLLPALARSRDEAGQRRVLGAVGPFFLANEVWL 60 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 + A G LF A+P + F+G YV ++L+L L A R + + R+ W + Sbjct: 61 VAAVGVLFGAFPHLEGRVFAGAYVLVVLLLLGLVTFTAAVQLRSRHPEGS-RRGWTFAIT 119 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQG 184 G+LV V +G+ GNL+ G+P + L P+ +L GL + + LQG Sbjct: 120 AGALVTAVSWGLFLGNLVRGLPLD----AHGRPIDDVLALFNPYAVLWGLGFVALFCLQG 175 Query: 185 GVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLM 244 V+L ++ + R + T+ V + +A W + Sbjct: 176 LVFLAVRGPAELTGRVRRLTRSLLPPVGVFLAIATVWGAFSVT----------------- 218 Query: 245 KLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFT 304 S + F LL + + + R +M L+ Sbjct: 219 --------------DGSWAALAVVAVAFAAYLLVLFGLRKPRLALPAVM--LLSACPALL 262 Query: 305 AGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVI 342 G+ FP V+ SS LT+ + ++ +++ Sbjct: 263 VGVLRFPVVLSSS--AGYQLTVEQAATTPDMTAVLGWF 298 >UniRef50_D1CB62 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CB62_THET1 Length = 337 Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats. Identities = 67/362 (18%), Positives = 138/362 (38%), Gaps = 40/362 (11%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGC--LLPLVARNDDERRIVINSVGAHWEGNQVWL 64 L + L+ + L+ + + G D G G LL + ++R+ + N++G WE N VWL Sbjct: 4 LNEVPALIGVLALMAYAVLAGADFGAGVWDLLAWGPKAKEQRKTISNAIGPVWEANHVWL 63 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIAD-ARWRKMWDAGL 123 I LF +PR ++A +V L L + R +F +R + +R+ W + Sbjct: 64 IFIIVLLFTCYPRAFSALSISLFVPFHLALLGIVLRGASFVFRAYAPERSRFASFWGSVF 123 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 SL P V G+ G + G ++ + +P ++ GL++L Sbjct: 124 GSASLFTPFVLGMCMGAISAGSIRQMGSKVTSDVSV----WTSPVSIVMGLMALFEAAYL 179 Query: 184 GGVWLQLKTVG-VIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNP 242 V+L L++ + ++ + + L A Sbjct: 180 AAVYLTLESPDKDLQESFRIRALISGFIFAAVSLGAL----------------------- 216 Query: 243 LMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVI 302 V + + + +P + LG L++ A++ + + A+ ++ Sbjct: 217 ---PVFSVYAPHLWERLLAPSVVPIVFLGIIVGLVSAAALFFRKYWIARISAAGQVVILL 273 Query: 303 FTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMW 362 I P+++ T+ +S++S+ TL ++ V I + I++ + + Sbjct: 274 LGWAIAQRPYIIYPE------FTVANSSASEATLRFVIWSVPIGMLILIPSLVVLFAVFK 327 Query: 363 GR 364 GR Sbjct: 328 GR 329 >UniRef50_A0LZZ1 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Gramella forsetii KT0803 RepID=A0LZZ1_GRAFK Length = 341 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 65/307 (21%), Positives = 120/307 (39%), Gaps = 29/307 (9%) Query: 22 FMISDGFDMGIGCLLPLVARNDDE--RRIVINSVGAHWEGNQVWLILAGGALFAAWPRVY 79 +++ G D G G + +R + + R V N +G WE N +WLI+ L+ A+P + Sbjct: 16 YVLLGGADFGAGIVELFSSRENKKLNRDTVYNVIGPVWEANHIWLIILIVILWIAFPGYF 75 Query: 80 AAAFSGFYVAMILVLCSLFFRPLAFDYRGKIA-DARWRKMWDAGLVIGSLVPPVVFGIAF 138 ++ + LVL + R +AF +R A + + ++ I SL+ P+ G++F Sbjct: 76 NIIIIYLHIPLTLVLLGITMRGVAFIFRHYDAVVDKSQDWYNHMFRISSLITPIFLGMSF 135 Query: 139 GNLLLGVPFAFTPQLRVEYLGSFWQ-LLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIH 197 G L+ G + F L F L GL + L +T G I Sbjct: 136 GALISGKIMVTNDYSETTFPEIFMDPWLNIFTFLTGLFYASLCAFLASTLLIGETTGDIR 195 Query: 198 LRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNN 257 ++ ++++A+ ++ ++ G L G ++ +D Sbjct: 196 ---KMYSRKSAIFTVVLVVIGGTVLGYGYLTEMVFVED---------------------- 230 Query: 258 FVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSS 317 F+ + V I L + AI + A + VIF A T FP ++ + Sbjct: 231 FLHNWVSLIAVGLSGLILIPLWRAIRNQHRLLTRIFAGMQILLVIFAAVYTHFPNLIITQ 290 Query: 318 VSPISSL 324 ++ L Sbjct: 291 TGEVNML 297 >UniRef50_C3DRT5 Cytochrome d ubiquinol oxidase subunit II n=2 Tax=Bacteria RepID=C3DRT5_BACTS Length = 121 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 49/121 (40%), Positives = 66/121 (54%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 L IW+ L GVI V+ I DG+ +G G + P V ++ ER + ++G W GN+VWLI Sbjct: 1 MLAIIWFGLWGVIWTVYFILDGYALGNGMIFPFVTKDRQERNQLQEAIGPFWGGNEVWLI 60 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 AGGA FAA+P YA FS Y + LVL +LF R ++ K W+K I Sbjct: 61 TAGGATFAAFPVTYANMFSYLYTPLFLVLLALFARAAGLEFMHKDDSPIWQKTCKWAFAI 120 Query: 126 G 126 G Sbjct: 121 G 121 >UniRef50_A3ZTP2 Putative cytochrome d ubiquinol oxidase subunit II n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZTP2_9PLAN Length = 341 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 73/356 (20%), Positives = 126/356 (35%), Gaps = 40/356 (11%) Query: 13 LLIGVILVVFMISDGFDMGIGC--LLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGA 70 +++G ++++ G D G G + N+ ER+++ +++G WE N +WLI Sbjct: 11 IVLGAATTLYLLFGGADFGAGIWEINTAFQSNEKERKLLYHAIGPVWEANHIWLIFVLVV 70 Query: 71 LFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGK-IADARWRKMWDAGLVIGSLV 129 LFAA+P + A S F + LVL + FR + +R I R ++ W S Sbjct: 71 LFAAFPLAFQALCSAFIIPAFLVLVGIVFRGAGYVFRAYSIDSGRQQQFWRTLFAGASAA 130 Query: 130 PPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFW-QLLTPFPLLCGLLSLGMVILQGGVWL 188 P G G L G Y G++ +TP L ++G+ V+L Sbjct: 131 APFFLGAIAGTLASG---DSKINAAGVYEGNYLTDWITPMALFTAFFTVGLCCYLAAVFL 187 Query: 189 QLKTV--GVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 + G + L + A + + L A ++V ++ L A Sbjct: 188 TREAEHSGEVELTLVWRQRALATGIWMGVLAAVGLVFVSLEAPELAHGFATRA------- 240 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 W L C +++ + + L +I+ G Sbjct: 241 ------------------WPLVALSAICGTGSLLLLLWRKYTPAAACTMLAAANIIWGWG 282 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMW 362 I +P + P LTL DS + L M+ V I+ +Y Sbjct: 283 IAQYPVIAPPF------LTLADSKAPDSVLWAMIGAVAAGAVILGPSLALLFYLFK 332 >UniRef50_A9CZ56 Cytochrome bd ubiquinol oxidase, subunit II n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9CZ56_9RHIZ Length = 251 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 107/238 (44%), Gaps = 17/238 (7%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 E L +I+ L+G+ ++V++I DGFD+GIG L PL +D ++ +++++G W+ N+ WL Sbjct: 8 EWLPYIFAALMGIAILVYVILDGFDLGIGILSPLA--DDTQKDRMVSAIGPFWDANETWL 65 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 +LA G L A+P + + Y + ++L L R +AF++R K+ + W+ Sbjct: 66 VLAVGLLLVAFPVAHGVILTTLYFPVAVLLIGLILRGVAFEFRAKV-SLDAKPSWNRMFF 124 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQG 184 IGSL+ + G G +LG+ ++ F L + G Sbjct: 125 IGSLMSALAQGYMLGLYVLGLDTSWPAVG--------------FAALVAVCLAAAYAAIG 170 Query: 185 GVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNP 242 WL KT G + +R+ + + LV L + + + +P Sbjct: 171 AAWLIHKTEGTLQVRAVKWLRASLGLVALGMAAISLATPLASTRDMGSLAGLSRKPHP 228 >UniRef50_A6G8S6 Cytochrome bd ubiquinol oxidase, subunit II n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G8S6_9DELT Length = 344 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 92/239 (38%), Gaps = 11/239 (4%) Query: 12 WLLIGVILVVFMISDGFDMGIGC--LLPLVARNDDERRIVINSVGAHWEGNQVWLILAGG 69 + LIGV ++ + ++ G D G G LL R + +R ++ ++ WE N +W+I Sbjct: 7 YWLIGVAVIAYAVTAGADFGGGLWDLLATGPRRERQRELIAEAIAPIWEVNHIWMIFVVV 66 Query: 70 ALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKM-WDAGLVIGSL 128 LF+ +P +A +V ++LVL + R AF +R + R+ W I S Sbjct: 67 MLFSVFPHAFAVVSIALHVPILLVLVGIVLRGSAFIFRAYGMEPDERRAQWGRVFAITSA 126 Query: 129 VPPVVFGIAFGNLLLGVPFAF--TPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 P+ G L G G F +PF L GL +L + + Sbjct: 127 ATPIALGAILAALSSGDILVELDAAGAPQVRSGFFVGWTSPFALAVGLFTLALFTMLAAT 186 Query: 187 WLQLK--TVGVIHL----RSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGP 239 +L + G + L R + A + + W LLAQ + P Sbjct: 187 YLAREAQVRGELELSIDFRRRAVISEAVAGALAMLVCWRAWAESPELFHNLLAQPWSLP 245 >UniRef50_D1SIK0 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1SIK0_9ACTO Length = 335 Score = 126 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 80/360 (22%), Positives = 140/360 (38%), Gaps = 32/360 (8%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 + W+ L+G+ +++ G+D G+G LL R + ++G + GN+VWL+ Sbjct: 1 MELAWYALLGLFFATYLVLGGYDYGVGLLLARRGPAPGNRATL-TALGPFFLGNEVWLVA 59 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 A G LF A+PR+ SGFY A++ L + R + A A R WD +V+G Sbjct: 60 AVGILFGAFPRLEGELLSGFYPAVLAALAGVVLVTAGVQLRSRPASAAARARWDRVVVVG 119 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 L+ + +G LL GVP + + L TPF GL L +V + G Sbjct: 120 CLLAALGWGAVLAGLLQGVPLSADGHVV-----GVGHLATPFVAAAGLALLALVAVHGAT 174 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 +L L+ ++ A + +A+ A PL + Sbjct: 175 FLTLRLPAAEAPALARLASGLVPAALVAVGAATVLGVLSDRVRAAVARPAVAVLLPLALV 234 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 A+L + V F + G Sbjct: 235 AALLAARAALRRGRAGV--------------------------AFAATATALALPAPLIG 268 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 L+P ++ S+ P +SLT+ ++ + + TL+++ + L LP +L + ++ GR+ Sbjct: 269 AALWPRILVSTADPAASLTVAEAAAGRPTLALLGWLALPLLPALLGFQAMCWWVFRGRID 328 >UniRef50_D2AUB4 Terminal oxidase subunit II n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2AUB4_STRRD Length = 337 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 67/352 (19%), Positives = 132/352 (37%), Gaps = 37/352 (10%) Query: 10 IWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDD---ERRIVINSVGAHWEGNQVWLIL 66 I +++ V + ++ + G D G G + R+ +RR++ +S+G WE N VWLI Sbjct: 6 ILLVVMWVGVTLYALLAGADFGGGVWDLVAGRSRAGMPQRRLIEHSIGPVWEANHVWLIF 65 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 L+ +P V+AA S Y+ + L + R AF +R + ++++ A Sbjct: 66 VIVVLWTGFPPVFAAVMSTLYIPLTLAALGIIARGAAFVFRKASTELWQQRLFGAAFATS 125 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S++ P G G + G + L P LL G+L++G+ V Sbjct: 126 SVLTPFFLGAVAGGIASG-----RVPPGLAAGDLVTSWLNPTSLLGGVLAVGVCAYLAAV 180 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 +L A + + F +G+ VL + + Sbjct: 181 YL-----------CDDAGRAGLPGLAEGFRRRALSTGLGVGAVVLGG----------IAV 219 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 V + + + LL+++ ++R + A+L VI+ Sbjct: 220 VRWDAPRLFDGLTHRAL--PLVVAAAVLGLLSLVLLWRRSYLSVRVTAALAVTSVIWGWP 277 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSY 358 + +P ++P LT+ + + L LV++ + +V+ W + Sbjct: 278 LAQYPIMLPP------DLTVDVAAADPAVLGATLVVLAVGALLVVPSMTWLF 323 >UniRef50_B5HKZ6 Cytochrome bd-I oxidase subunit II n=3 Tax=Streptomyces RepID=B5HKZ6_9ACTO Length = 346 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 59/342 (17%), Positives = 127/342 (37%), Gaps = 38/342 (11%) Query: 12 WLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERR---IVINSVGAHWEGNQVWLILAG 68 ++ + + + + G D G G L + +R ++ +++ WE N VWLI Sbjct: 6 AWVLVLAIAAYACAGGTDYGAGFWDLLAGGAERGKRSRWLIDHAMAPVWEVNNVWLIFIL 65 Query: 69 GALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSL 128 ++ +P ++ FS ++ + L L R F R ++++ A I SL Sbjct: 66 VIMWTGFPTLFQTVFSAMWLPLALAAVGLVLRGAGFALRKPTRRLAQQRIYGAVFAISSL 125 Query: 129 VPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWL 188 + P FG G + G +++ S +L GLL++ G V+L Sbjct: 126 LTPFFFGAVLGGIASG-------RVKPGTTASTDAWANGTSVLVGLLAIAATAFLGAVFL 178 Query: 189 QLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVA 248 + + + V++ F + + + V Sbjct: 179 ---CSDALRFGADDLVDYFRVRVLIAFAVVVVLALIALP-------------------VT 216 Query: 249 VLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGIT 308 ++ + + + + +L C L TV+ ++R GW + V+ G Sbjct: 217 HNDARYVWDGLTGGLGLLLVILAAVCGLATVLLVWRRSYGWSRHTSVASVALVVGAWGCA 276 Query: 309 LFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIV 350 P+++P SLT+ ++ + TL ++++ + + +V Sbjct: 277 QRPYLLP------ESLTVAEAAGAAHTLRWLVIVTAVAIVLV 312 >UniRef50_A8EQ33 Cytochrome D ubiquinol oxidase subunit II n=1 Tax=Burkholderia pseudomallei 406e RepID=A8EQ33_BURPS Length = 278 Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 74/139 (53%), Gaps = 3/139 (2%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L +W ++ + ++++++ DGFD+G+G L R++ ER +I SV W+ N+ WL+L Sbjct: 5 LVPLWAGVLALSVLMYVLLDGFDLGVGMLF-FFHRDEAERDRMIASVSPVWDFNETWLVL 63 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 G L AA+P ++ Y ++ +L L FR +AF++RG + +W IG Sbjct: 64 GGTLLLAAFPGAFSVVVPAVYFPVLAMLLGLLFRGVAFEFRGVAG--ARKTVWSRAFAIG 121 Query: 127 SLVPPVVFGIAFGNLLLGV 145 SLV G+ G + G Sbjct: 122 SLVATAAQGVVLGMFVQGF 140 Score = 62.6 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 80/201 (39%), Gaps = 9/201 (4%) Query: 170 LLCGLLSLGMVILQGGVW--LQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGID 227 ++ + + +L G ++ + + GV R + ++ A+ ++ G L + + Sbjct: 79 VVPAVYFPVLAMLLGLLFRGVAFEFRGVAGARKTVWSRAFAIGSLVATAAQGVVLGMFVQ 138 Query: 228 GFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRP 287 GFV + S A + W + P+L L ++ RG Sbjct: 139 GFVCVIAFIAVVSVWTPLADARIAARWFA-WPNLLFFSPVPVLTAALAWLAARSLRRGGE 197 Query: 288 GWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFL 347 F+ + + F I+L+P V P S+TLW + S+ + +++ L Sbjct: 198 ALPFVASIGLFFLAFSGLTISLWPHVAPP------SITLWSAASASASQEFLMIGTAFML 251 Query: 348 PIVLLYTLWSYYKMWGRMTTE 368 P++L Y WSY+ G++ + Sbjct: 252 PVLLFYVCWSYWVFRGKVRGD 272 >UniRef50_D1A755 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A755_THECD Length = 248 Score = 123 bits (310), Expect = 9e-27, Method: Composition-based stats. Identities = 38/140 (27%), Positives = 70/140 (50%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 + IW L+ + + +GFD+G+G LLP++ R +R ++I ++ N+VWL+ Sbjct: 1 MELIWLGLLVALPAGYFALEGFDLGVGMLLPVLGRTRRDRDLMIAAIAPFVLANEVWLVA 60 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 A G L A+P + G Y ++++L + R +R ++ WR +WDA + Sbjct: 61 AAGVLIGAFPLLEGKVLFGLYPLVVVMLLAWVLRDAGLWFRRRLDGDAWRTLWDAVIAAA 120 Query: 127 SLVPPVVFGIAFGNLLLGVP 146 SL + +G+A + G Sbjct: 121 SLTLSLCWGMALYAITTGFT 140 >UniRef50_Q937L0 Cytochrome d terminal oxidase (Fragment) n=1 Tax=Erwinia chrysanthemi RepID=Q937L0_ERWCH Length = 121 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 62/121 (51%), Positives = 80/121 (66%) Query: 258 FVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSS 317 F PVLW PLLG PL+T + + FL +SL VI TAGI +FPF+MPS Sbjct: 1 FNNHPVLWAVPLLGVVLPLMTAVMARAEKGAMAFLFSSLSIACVILTAGIAMFPFIMPSV 60 Query: 318 VSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLRRNENEL 377 P SLT+WD+TSS LTL +M V+ +IF+PIVL YT+W YYKM+GR+T E + +N + L Sbjct: 61 TVPNVSLTVWDATSSLLTLRVMTVVAIIFVPIVLSYTIWCYYKMFGRITKEHVEQNSHSL 120 Query: 378 Y 378 Y Sbjct: 121 Y 121 >UniRef50_A9AX76 Cytochrome bd ubiquinol oxidase subunit II n=2 Tax=Bacteria RepID=A9AX76_HERA2 Length = 336 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 72/343 (20%), Positives = 127/343 (37%), Gaps = 43/343 (12%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGC--LLPLVARNDDERRIVINSVGAHWEGNQVWL 64 L + + + ++ + I G D G G LL R +R + ++VG WE N VWL Sbjct: 3 LEVVVAAIGLLGVITYAILAGADFGGGIWDLLAWGPRRTQQREAIAHAVGPVWEANHVWL 62 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWR-----KMW 119 I LF +P +AA G + L L + R AF +R + + W Sbjct: 63 IFIIVVLFTGFPTAFAALSIGLFAPFHLALLGIILRGAAFVFRAYSPQKEQQPSQSSQRW 122 Query: 120 DAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGM 179 S++ PV+ G+ + G ++ E +TP + GLL+L + Sbjct: 123 GTIFGAASVITPVILGMTLSAVSAGQLRVIDGVVQSE----GIVWMTPLAIAMGLLALAL 178 Query: 180 VILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGP 239 V++ ++T + + A V+ LL+ L+ Sbjct: 179 CAYLAAVYMTIETRDELQADFRQRALLAGTAVVGLSLLSLPLLYFT-------------- 224 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299 A + + +PVL I G LL+ A+ R R A + Sbjct: 225 --------AQHLWEGLISVRAAPVLTI----GLLAALLSGWALLRWRFQLARGAAIVQIS 272 Query: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVI 342 ++ GI +P+++ +TL +++ + TL +LV Sbjct: 273 CLLAGWGIAQYPYIIYP------DITLATASAPRATLIFILVA 309 >UniRef50_D2BDC9 Cytochrome d ubiquinol oxidase subunit II n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BDC9_STRRD Length = 255 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 95/259 (36%), Gaps = 20/259 (7%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 + +W ++ ++L+ + +G +G G LLP + R +R V+ ++ N+VWL+ Sbjct: 1 MDILWTGVLALLLIGYFALEGSGIGAGMLLPALGRTQPDRDRVVAAMAPFVLANEVWLVA 60 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 G LF A+P + SG Y ++ +L S R +R ++ WR WD + +G Sbjct: 61 VAGVLFGAFPSIEGEVLSGLYPLVVTLLVSWILRDAGLWFRRRLDGHAWRAGWDWMICLG 120 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S + +G+A + G+ + L+ L G Sbjct: 121 SYGLALSWGMALVAMAGGLSGPPIGLPGLGGG---------------LVVAAAFALHGWT 165 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 +L + G + R ++ +A + V + + PS L L Sbjct: 166 FLSWRLPGQVTG-----ASRTGRALLASAGVAALPVAVLLAALAPWLLEHIAPSGTLNVL 220 Query: 247 VAVLPGAWMNNFVESPVLW 265 ++ +W Sbjct: 221 SVMILPFAPLMLGAQVWVW 239 >UniRef50_B9TGE2 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TGE2_RICCO Length = 325 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 72/205 (35%), Gaps = 6/205 (2%) Query: 86 FYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGV 145 Y + +L +L R +A +R + A AR + WDA ++ GS + G+ G+L+ G+ Sbjct: 1 MYPVIFAMLFALILRGVAIGFRSE-ATARAKARWDAVMLTGSTMAAFCQGVLVGSLVQGI 59 Query: 146 PFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATK 205 R Y G W L F L CG+ G WL +T G + R++ A+ Sbjct: 60 -----RTARGTYQGGPWDWLGAFALFCGVALALGYAWLGASWLIWRTEGSLQQRARRASL 114 Query: 206 RAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLW 265 + W D + D +G + + A + + Sbjct: 115 ALGTATAASTAIVSLWTLHLNDYYARRWTDDSGGVALPVAVFVFASLAAGFVYGIARRRA 174 Query: 266 IFPLLGFFCPLLTVMAIYRGRPGWG 290 PL+ + V + Sbjct: 175 FAPLVFALICVAAVYHHRARQFPAA 199 >UniRef50_A7H8Z5 Cytochrome bd ubiquinol oxidase subunit II n=6 Tax=Myxococcales RepID=A7H8Z5_ANADF Length = 351 Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats. Identities = 65/340 (19%), Positives = 111/340 (32%), Gaps = 40/340 (11%) Query: 27 GFDMGIGC--LLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFS 84 G D G G LL R +R +V ++G WE N VWLIL LF +P +AA Sbjct: 23 GADFGGGIWDLLATGPRRKAQRDLVEQAIGPIWEANHVWLILVIVLLFTCFPSAFAAISI 82 Query: 85 GFYVAMILVLCSLFFRPLAFDYRGK-IADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLL 143 +V ++L+L + R AF +R + + + W S++ PVV G+ G + Sbjct: 83 ALFVPLVLLLFGIVLRGAAFTFRTYDRPEDKVQVRWGLVFSSSSVLAPVVLGVVVGAIAS 142 Query: 144 GVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLA 203 G + L+PFPL GL + + +L ++ G + + Sbjct: 143 GRLAGPPEGVD------PLAWLSPFPLSVGLFAAALFAFLAASYLAVEAKGELQEDFRRR 196 Query: 204 TKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPV 263 A +V +LAG W A+ F Sbjct: 197 AIGAGGVVFGAAVLAGVLSWFDAPLVFAGLTRRGFSLPLHAATALAAVTAFAALFRRRYR 256 Query: 264 LWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISS 323 L ++ G + +P+++ Sbjct: 257 LARAAAAAQV-------------------------TLIVLGWGASQYPYLVVP------G 285 Query: 324 LTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 LTL D+++ + T +L + + + G Sbjct: 286 LTLADASAPRATQVAVLWALAAGAVFLFPALYLLFRVFKG 325 >UniRef50_D2B5X6 Cytochrome bd-type quinol oxidase subunit 2-like protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B5X6_STRRD Length = 249 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 57/252 (22%), Positives = 93/252 (36%), Gaps = 18/252 (7%) Query: 14 LIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFA 73 L+ V + + G D+G+G LLP + R+DDER V+ S+ + GN+VWLI + G L Sbjct: 5 LLAFFAVGYFVLAGADLGVGALLPYLGRSDDERGRVLASITPFFLGNEVWLIASAGILVG 64 Query: 74 AWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVV 133 A+P + SG YV +++L R RG++ A WR D + GS V + Sbjct: 65 AFPVLEGELLSGMYVPFVMLLLGWVVRDAGIWLRGRVDRAGWRGGCDGAVAAGSWVVVLS 124 Query: 134 FGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTV 193 +G P + E + + + + G + L+ Sbjct: 125 WGFIL------------PGMGQEPVTGLGAAI------VVPAVVALFCAHGLAFAGLRLA 166 Query: 194 GVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGA 253 G R++ ++ + G L + G L + L L L Sbjct: 167 GGPRERARRFYGASSERTIYALTAGGMALVCLLAGSRLPLAENLADPATLALLTPSLLVI 226 Query: 254 WMNNFVESPVLW 265 LW Sbjct: 227 TPVLVASQVWLW 238 >UniRef50_C0AEE2 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0AEE2_9BACT Length = 344 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 63/360 (17%), Positives = 127/360 (35%), Gaps = 33/360 (9%) Query: 13 LLIGVILVVFMISDGFDMGIGCL--LPLVARNDDERRIVINSVGAHWEGNQVWLILAGGA 70 IG L+++++ G D G G L LP R + ++ ++ ++G WE N +WLIL Sbjct: 7 FFIGASLLLYVLLGGSDYGAGILELLPAGGRREAQKHVINEAMGPVWEANHIWLILVIVV 66 Query: 71 LFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIA--DARWRKMWDAGLVIGSL 128 LF +P ++ ++ M+ +L + R AF +R A ++++ + SL Sbjct: 67 LFVGFPTIFTTLMVALHIPMLALLVGIVVRGTAFTFRHYDAIQAPASQRVYTVLFGVSSL 126 Query: 129 VPPVVFGIAFGNLLLGV--PFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 + GI +L G+ A + +PL GL + + V Sbjct: 127 WSALWLGIIVASLGRGLIDTSAEAAHELGPWGVYVAPWWGAYPLAVGLFVACIFVFLACV 186 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 +L +T R R A + ++AG ++ G Sbjct: 187 YLIDETEDAGLKR---RFTRCAAVFNCAVIVAGGGVFAASYGERESLPSV---------- 233 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 F +P+ L + MAI+R ++A ++ Sbjct: 234 -----------FFRNPLTLGVMALATLLFVALWMAIWRRNVLVTRIVAGGQVTLILLGWW 282 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 + P + ++ P L+ + + L +++ +L + ++ R+ Sbjct: 283 LLYAPVAVLTAGGP---LSFYAEAAPPAVLLQLVIALLAGSCFIFPSLVFLLRVFKRRLN 339 >UniRef50_Q2JGE7 Cytochrome bd ubiquinol oxidase, subunit II n=3 Tax=Frankia RepID=Q2JGE7_FRASC Length = 330 Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats. Identities = 67/343 (19%), Positives = 121/343 (35%), Gaps = 44/343 (12%) Query: 13 LLIGVILVVFMISDGFDMGIGC--LLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGA 70 +++ V L + + G D G G LL D+R+++ S+G WE N VWLI A Sbjct: 9 IIMVVGLTAYALLGGADFGGGVWDLLARGRHAGDQRKLISASLGPVWEANHVWLIFIVVA 68 Query: 71 LFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWR-KMWDAGLVIGSLV 129 +F+ +P Y S V + + L + R A+ YR A W + S + Sbjct: 69 MFSGFPEAYGVIGSSLEVPLSVALVGIVLRGAAYVYRSYGAGGAGPDHWWGHVFAVSSTI 128 Query: 130 PPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQ 189 P G+A L G + F + +PF L+CG ++ V+L Sbjct: 129 APFALGVAGAALASG---------DLSTDDPFAPVRSPFGLVCGAFAVAATAFLAAVYLC 179 Query: 190 LKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAV 249 R A L + I G VL A L Sbjct: 180 ----------------RDAASSPATAHLVADFRRRAIGGAVLCGALAAILLPLLWADAPQ 223 Query: 250 LPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITL 309 + G + + + L + ++A++R + G + A L +++ + Sbjct: 224 VAGRFRDRSLP------LVALSTLGGIGALVALWREQFGAARIAAGLAVGAMLWGWAVAQ 277 Query: 310 FPFVMPSSVSPISSLTLWDSTSSQLTLSIML----VIVLIFLP 348 +P ++ T+ + + + ML +++ +P Sbjct: 278 YPDLVVGQA------TVDTAAAPTTNIRAMLFAIAGGLVVLVP 314 >UniRef50_A4FDV9 Cytochrome d ubiquinol oxidase subunit II n=4 Tax=Actinomycetales RepID=A4FDV9_SACEN Length = 340 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 60/362 (16%), Positives = 122/362 (33%), Gaps = 43/362 (11%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVA---RNDDERRIVINSVGAHWEGNQ 61 L +W L ++++ G D G G L R +R ++ +S+G WE N Sbjct: 6 AVLAVLWIGL-----TLYVLFGGADFGGGLWDLLAGGAERGRPQRELIEHSIGPVWEANH 60 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWLI + +P +A + Y+ + L + R AF +R + R R+++ A Sbjct: 61 VWLIFVITLFWTVFPAAFAPFAATLYIPLTLAALGIIARGAAFAFRKVSDEFRQRRLFGA 120 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 S+V P G G + G + P + G+L++ Sbjct: 121 AFAFSSVVTPFFLGTLLGAVASG-----RVPPDLASGDVLTSWWNPTSVTAGVLAVVTTA 175 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 V+L T R L ++ ++ G + + A Sbjct: 176 YLAAVFL---TADARREREPELASAFRLRALVSGVVLGMLTLAALPVVRVDAPHLFAGLT 232 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 + LL++ + R + A++ V Sbjct: 233 GK--------------------ALPLVVTSVVAGLLSLALLLARRYLLVRITAAVAVTAV 272 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 ++ G+ +P ++P +T+ D+ ++ L +L ++ + +++ L+ Y Sbjct: 273 LWAWGVAQYPVMLP-------GVTVADAAAAPSVLVPVLWVLAVGSVLLVPSLLYLYAIF 325 Query: 362 WG 363 Sbjct: 326 QR 327 >UniRef50_C7QJB4 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QJB4_CATAD Length = 338 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 59/337 (17%), Positives = 111/337 (32%), Gaps = 37/337 (10%) Query: 28 FDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFY 87 F G+ LL D ERR++ +++G WE N VWLI A F+ +P + G Sbjct: 26 FGAGVWDLLARGRHADRERRLIAHALGPVWEANHVWLIFVIVATFSGFPTAFGIIARGLE 85 Query: 88 VAMILVLCSLFFRPLAFDYRGKIADARWRK-MWDAGLVIGSLVPPVVFGIAFGNLLLGVP 146 + + L L + R A+ YR A +W + S + P + G++ L G Sbjct: 86 LPLALALAGIVLRGAAYVYRAYGEGAAGPDSLWSRVFAVASSITPFMLGVSGAALATG-- 143 Query: 147 FAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKR 206 G +PF L+ G+ ++ + V+L Sbjct: 144 ------KITATSGPLTPFDSPFTLVAGVFAVVVTAFLAAVYLCHDAGTDPETED------ 191 Query: 207 AALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWI 266 + + A A S L+ L+ + F E + ++ Sbjct: 192 --------------LVPAFRRRALGAAAVAGVVSMALLPLLYQDAPIVAHRFTERSIPFV 237 Query: 267 FPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTL 326 + C ++ I++ A+ GV+ +P + + + T Sbjct: 238 --AVAVVCGFGSLAVIWKRHYVLARATAATAVIGVLLGWAAAQYPDL------AVGAATA 289 Query: 327 WDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 S + L +L+ + + ++L G Sbjct: 290 RGSAAGPANLHALLIAMGFGMVVILPAFYLLLKVFSG 326 >UniRef50_C1YQX5 Cytochrome bd-type quinol oxidase, subunit 2 n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YQX5_NOCDA Length = 307 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 56/291 (19%), Positives = 98/291 (33%), Gaps = 20/291 (6%) Query: 21 VFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYA 80 +++ G D+G+G L+P +AR ++RR V+ ++ ++ ++VWL+ A G L +P + Sbjct: 15 GYLVLAGADIGLGMLMPRLARGPEQRRRVVAAIAPYFLASEVWLVAAVGVLAGLFPALEH 74 Query: 81 AAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGN 140 A + + + ++L R R ++ RWR + D LV GS +G+ Sbjct: 75 HAVAELWPVLAVLLAGWLVRDAGLWLRARVDGERWRLVCDCALVGGSWALAAAWGLVVAG 134 Query: 141 LLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRS 200 LL G A + F LC + + L+G + + VG S Sbjct: 135 LLAGGLTA-----------------SAFTPLCAVAVTALFALRGAAFGAERLVGPADSES 177 Query: 201 QLATK---RAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNN 257 R + L V G L A + L+ + G Sbjct: 178 ADVAARDTRPLARLALGAAALAAVAAVLPGGPDLSPGPAAALTAVLLAALVATSGLVGPM 237 Query: 258 FVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGIT 308 + G L P + VI + Sbjct: 238 LSRHTSAAAIAVPGLLVALAAPELPSAPIPATTAVFVWATLVPVIPVMFVG 288 >UniRef50_C1ZA12 Cytochrome bd-type quinol oxidase, subunit 2 n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZA12_PLALI Length = 345 Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats. Identities = 66/371 (17%), Positives = 125/371 (33%), Gaps = 42/371 (11%) Query: 10 IWWLLIGVILVVFMISDGFDMGIGCLLP--LVARNDDERRIVINSVGAHWEGNQVWLILA 67 I + + + L + I G D G G + +R+++ +G WE N VWLI Sbjct: 11 ILYGTLLLALTAYAILGGADFGAGIWEFNTSFRSHRRDRQLLREVIGPVWEANHVWLIFV 70 Query: 68 GGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIA-DARWRKMWDAGLVIG 126 L++A PRV+ ++ ++L L + R AF +R + + + Sbjct: 71 LVILWSAMPRVFQHLCVVMWLPLLLGLAGIVCRGAAFIFRAYSPVENSVTRASTVLFGLA 130 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S P G G +L + S L P + G ++ + + V Sbjct: 131 STAAPFFLGTVVGGILT--------REATNPRLSQTAWLNPLAIYSGFFAVAVCLYLCSV 182 Query: 187 WLQLKTV-GVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 +L + ++ RA L + LLA L +A+ +PL+ Sbjct: 183 FLFREASLRHERFLMEIWRSRAMLSGVWTGLLAMAGLAFVSSEQPEMARRLIWGDSPLV- 241 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 LL + + +++A+Y P L + L V++ A Sbjct: 242 -----------------------LLSWAGGMFSMVALYFRWPLAAVLASVLAVAAVLWGA 278 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 G+ + P M + + L MLV + + ++L W ++ Sbjct: 279 GLAVSPATMIPEIPLD------QLVAPPSVLWAMLVAIAGGMLLLLPSLAWLFWLFKSSS 332 Query: 366 TTETLRRNENE 376 + + Sbjct: 333 ALDHEHLAHSS 343 >UniRef50_Q47RW4 Putative cytochrome D ubiquinol oxidase subunit II n=1 Tax=Thermobifida fusca YX RepID=Q47RW4_THEFY Length = 304 Score = 97.3 bits (241), Expect = 9e-19, Method: Composition-based stats. Identities = 39/125 (31%), Positives = 63/125 (50%) Query: 20 VVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVY 79 + + G D+G+G LLP AR+ ERR +I + ++ G++VWL+ G + P Sbjct: 14 GGYFVFAGSDIGLGMLLPYAARSPAERRRLIAVIAPYFLGSEVWLVATIGVVAGLVPVWE 73 Query: 80 AAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFG 139 AA + + +L+L + R RG++ ARWR +WD + GS + V +G Sbjct: 74 AAVVTAQWPVFVLLLAAWLGRDAGLWLRGRLPAARWRAVWDGAVAAGSWLLAVAWGFVVA 133 Query: 140 NLLLG 144 LL G Sbjct: 134 ALLGG 138 >UniRef50_UPI0001C31BDC Cytochrome bd-type quinol oxidase subunit 2- like protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31BDC Length = 424 Score = 95.4 bits (236), Expect = 3e-18, Method: Composition-based stats. Identities = 57/327 (17%), Positives = 107/327 (32%), Gaps = 39/327 (11%) Query: 12 WLLIGVILVVFMISDGFDMGIGCLLPLVARNDDE---RRIVINSVGAHWEGNQVWLILAG 68 + L+G+IL +++ G D G G R + R S+ WE N VWL+ Sbjct: 10 FALVGLIL--YVVLAGADFGAGFWQLAAGRGERGSRIREHAHASMAPVWEANHVWLVFIL 67 Query: 69 GALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSL 128 + +P +A+ S + + + + FR A+ R + R ++ D + S+ Sbjct: 68 VIAWTCYPEAFASIASTLSIPLFIAAIGIVFRGAAYALRAGTSQRRELRVIDTVFAVSSI 127 Query: 129 VPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWL 188 + P G G + G + ++ L G+L++ V+L Sbjct: 128 LTPFALGTVIGAIASG-----RVPVGNAAGDAWTSWTNTTSLTIGVLAVVTSAYIAAVYL 182 Query: 189 QLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVA 248 + A + AL L + + + V D + L L Sbjct: 183 AADAARDGDAEMEEAFRHRALGTGLVAGVVAVAGLLVLRDDVRSLYDELVSGDGLPAL-- 240 Query: 249 VLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGIT 308 ++ + T+ + R W A+L VI + Sbjct: 241 --------------------IVSALAGIGTLALVARRSYEWARYSAALAVAAVIAGWALA 280 Query: 309 LFPFVMPSSVSPISSLTLWDSTSSQLT 335 P ++P LT+ + +S T Sbjct: 281 QSPVLLP-------GLTVEQAAASHDT 300 >UniRef50_D1NY02 Cyanide-insensitive oxidase CioB n=1 Tax=Providencia rustigianii DSM 4541 RepID=D1NY02_9ENTR Length = 156 Score = 83.0 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 67/181 (37%), Gaps = 29/181 (16%) Query: 190 LKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAV 249 +KT G + + LL++ + W P+ Sbjct: 1 MKTEGHLRKTMYRILRPLTLLMLAVIGVISVW-------------------TPMQSEAIY 41 Query: 250 LPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRG-RPGWGFLMASLMQFGVIFTAGIT 308 + N PLL C L + ++ R FL A + F GI+ Sbjct: 42 QRWFTLPNLF---FFLPVPLLVIGCVWLIIKSVKRQQHDSIPFLSALALIFLGFTGLGIS 98 Query: 309 LFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTE 368 ++P ++P +++ D+ +L MLV L +P++L+YT WSYY G++T E Sbjct: 99 IWPNLIPPAIN------FRDAAGPPESLGFMLVGALFIIPVILVYTYWSYYVFRGKITPE 152 Query: 369 T 369 Sbjct: 153 Q 153 >UniRef50_A8V4U0 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V4U0_9AQUI Length = 98 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 2/88 (2%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M + TL IW+LL G+ L+ + ++DGFD+G G L + A++++ R +N+VG W+G Sbjct: 3 MEMFTTLNGIWFLLAGIFLIGYSLTDGFDLGSGIL-HIFAKDENTRITYMNAVGPVWDGM 61 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYV 88 + L+L A F + F FY+ Sbjct: 62 KSGLLLEEYA-FRSLSCCVCCIFQCFYL 88 >UniRef50_B2SHW9 Cytochrome D ubiquinol oxidase subunit II n=2 Tax=Xanthomonas oryzae pv. oryzae RepID=B2SHW9_XANOP Length = 85 Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats. Identities = 35/62 (56%), Positives = 44/62 (70%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 + DY TLR IWWLL+GV+L + + GFD+G+G LLP VA ND ERR+VIN+VG W Sbjct: 5 LLDYTTLRVIWWLLLGVLLSGYAVMSGFDLGVGALLPFVANNDAERRLVINTVGPVWRAQ 64 Query: 61 QV 62 V Sbjct: 65 HV 66 >UniRef50_B2JRW5 Cytochrome bd ubiquinol oxidase subunit I n=1 Tax=Burkholderia phymatum STM815 RepID=B2JRW5_BURP8 Length = 234 Score = 65.7 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 6/102 (5%) Query: 272 FFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTS 331 V AI R R + A + +F T+FPF +P S+T+ +S Sbjct: 139 ALLAAGFVYAIVRRRAFAPLVFALVWFVFALFCVLYTIFPFGLPP------SITIAQGSS 192 Query: 332 SQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLRRN 373 T + +L + +P VL+Y+ ++++ G++T+ R Sbjct: 193 PPRTQAFVLGGSSVLVPAVLVYSTFAFWVFRGKVTSARRRDE 234 >UniRef50_C9LLF6 CydB n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLF6_9FIRM Length = 305 Score = 60.7 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 43/267 (16%), Positives = 89/267 (33%), Gaps = 23/267 (8%) Query: 17 VILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWP 76 L +++ + D G+ + P+VA+N++ER+ +N + +GN+ W L G A + Sbjct: 14 FFLAIYLWLESQDFGVAIVAPMVAQNEEERKTALNLLKPGLDGNEAWAFLCAGVTGALFS 73 Query: 77 RVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGI 136 + + ++L + R A W P ++ G+ Sbjct: 74 NGRFNIPESTFWPLGIILTGMIVRLAA-------------AFWGNIFQ----QPLLLRGV 116 Query: 137 AFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVI 196 F ++ + W L T + + I G ++ KT + Sbjct: 117 RFITIINVISAGVLALELAN-----WDLFTTKSVFGLIWLFMSCIQVGAIYGACKTANPL 171 Query: 197 HLRSQLATKRAALLVMLCFL-LAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWM 255 R + +L ++ F+ + G W +G +G S+ ++ Sbjct: 172 GERFRATFLVTNILSLMAFIAVFGAWYVLGNREIFGTDMLLSGFSSVVIISAIAFFSVRA 231 Query: 256 NNFVESPVLWIFPLLGFFCPLLTVMAI 282 + +L G C L M + Sbjct: 232 RHVYAGMLLSYIAQWGAVCIYLFTMML 258 >UniRef50_B3SF07 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3SF07_TRIAD Length = 262 Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 67/164 (40%), Gaps = 7/164 (4%) Query: 203 ATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESP 262 + +A + ++ +L + L + P + ++ W+ Sbjct: 83 WKRFSAKVHLIATILVVLGTHHSAFWILSLNSWMHTPDGISVIDGSIRIHDWLKIDSYDF 142 Query: 263 VLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQ-FGVIFTAGITLFPFVMPSSVSPI 321 L + F L + + W + + ++ + F+ GI+L+P+++ Sbjct: 143 SLLHYCFFIFGRGLAFEFRLKAMKSRWIWDWSFIVGSYLATFSQGISLWPYIVVP----- 197 Query: 322 SSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 +T+WDS + TL + +I+ I LPIV+ Y+++ YY ++ Sbjct: 198 -DITIWDSAAPPETLKFVSIIICISLPIVIGYSIFVYYLFKEKL 240 >UniRef50_UPI000191363F hypothetical protein Salmonellaentericaenterica_25409 n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. AG3 RepID=UPI000191363F Length = 91 Score = 55.7 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 5/84 (5%) Query: 123 LVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVIL 182 L +GS++ +++ + + GS LTPF L CG+ + L Sbjct: 13 LFVGSILATFAQ-----GVVVSAVVSGFQVEGRTFSGSQLDWLTPFNLFCGVGLVVTYAL 67 Query: 183 QGGVWLQLKTVGVIHLRSQLATKR 206 G WL +K+ +H R ++ Sbjct: 68 LGATWLIMKSEDPLHSRMCALSRP 91 >UniRef50_Q88HL8 Ubiquinol oxidase subunit II-related protein n=1 Tax=Pseudomonas putida KT2440 RepID=Q88HL8_PSEPK Length = 89 Score = 53.0 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 6/90 (6%) Query: 263 VLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPIS 322 P+L + A+ R FL+ F GI+L+P ++P S+S Sbjct: 6 WFMPVPILVLVTCYGLLRAVARNAHYTPFLLTLAQIFLGYSGLGISLWPNIIPPSIS--- 62 Query: 323 SLTLWDSTSSQLTLSIMLVIVLIFLPIVLL 352 +W++ + + MLV L LP L Sbjct: 63 ---IWEAAAPPQSQGFMLVGTLFILPSSLG 89 >UniRef50_C8Q5N5 Putative uncharacterized protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q5N5_9ENTR Length = 81 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 35/67 (52%), Gaps = 6/67 (8%) Query: 297 MQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLW 356 + + ++P+++PS V+ L+ S +S +T ++L+ + + + L+Y +W Sbjct: 5 LITSTLTGIIYAMYPWIIPSQVN------LYQSAASSVTQQVVLIGTAVMILLTLIYHIW 58 Query: 357 SYYKMWG 363 ++ + G Sbjct: 59 PFWIIKG 65 >UniRef50_B1HTX5 Cytochrome d ubiquinol oxidase subunit II n=2 Tax=Bacillaceae RepID=B1HTX5_LYSSC Length = 341 Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 44/323 (13%), Positives = 97/323 (30%), Gaps = 31/323 (9%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCL---LPLVARNDDERRIVINSVGAHWEGNQV 62 TL + ++ + L ++I D G G L+ +N I+ + WE V Sbjct: 2 TLEILGISVLWIFLFGYVIVASIDFGAGFFNAYSLLIGKNHILTNIIKRYLSPVWEVTNV 61 Query: 63 WLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAG 122 +L+ + +P+ + + + + L L R + + R + Sbjct: 62 FLVFFFVGIVGFFPQTAFYYGTILLIPVSISLVLLAIRGSYYAFESYGT--RGHIGYTLT 119 Query: 123 LVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVIL 182 + L+ P + F G Q + Y +PF +LS+ V+ Sbjct: 120 YGVAGLLIPASLSVVFAIAGGGYVDLVNGQPVLNYWTL---YTSPFAWSIVVLSIAAVLY 176 Query: 183 QGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNP 242 V+L + ++ ALL +++ + + + Sbjct: 177 ISAVFLTWYAHKANDKEATKLMRKYALLWAAPLMVSALGIMYEMKSINPESYGHMVNLW- 235 Query: 243 LMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVI 302 W+F + + ++ R + G + Sbjct: 236 ----------------------WMFAISAILFMITVLLLALRKKYGLAVALLIAQFAVAF 273 Query: 303 FTAGITLFPFVMPSSVSPISSLT 325 F GI +P+++ ++ T Sbjct: 274 FAYGIAQYPYLLYPYLTIYDGFT 296 >UniRef50_B6B0F2 Cytochrome bd ubiquinol oxidase, subunit II n=1 Tax=Rhodobacterales bacterium HTCC2083 RepID=B6B0F2_9RHOB Length = 61 Score = 43.0 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 24/41 (58%) Query: 324 LTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 LT++++ S +L I L+ L LP +L YT SYY G+ Sbjct: 14 LTIFEAASVPESLFINLLGTLFALPAILEYTFLSYYIFRGK 54 >UniRef50_Q5WII1 Cytochrome d ubiquinol oxidase subunit II CydB n=2 Tax=Bacillus RepID=Q5WII1_BACSK Length = 346 Score = 42.6 bits (99), Expect = 0.023, Method: Composition-based stats. Identities = 48/346 (13%), Positives = 106/346 (30%), Gaps = 30/346 (8%) Query: 20 VVFMISDGFDMGIGCLLPLVARNDDERRIVI--NSVGAHWEGNQVWLILAGGALFAAWPR 77 ++ ++ D G G +R + + I N + W+ V+L+L A A +P Sbjct: 16 FIYAVAGSIDFGTGFWAMYYSRQNHYKAATIANNFLSPAWKVTNVFLVLLVVAFVALFPG 75 Query: 78 VYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIA 137 + V LVL L R Y + ++ +M + L P + Sbjct: 76 AAPTLGTLMIVPFCLVLLLLTIRSAFLVYA--YSTKKYSRMLTLVSGLCGLFIPAILVSI 133 Query: 138 FGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIH 197 + G + + F F G + + + Sbjct: 134 LPAAIGGFVVVAGDKQYILVNELFLSP--AFYTHVGFGLVTQLFISALFMCDYAKEAGDE 191 Query: 198 LRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNN 257 + K A L + + A ++ L+ + +++ Sbjct: 192 STASSYRKNAIFLGPVTLVFAVAAIFT------------------LIPEAPWMFEKFLSL 233 Query: 258 FVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSS 317 + + LG+ + G P L+ + G P+++ + Sbjct: 234 WHWYTLSLFAFALGYSALWWRSKTSHLGHPRAALLLIVVQFGLASIAYGSAHLPYLLYPN 293 Query: 318 VSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 V T++D+ +++ +L+ LI L I++ L+ + + Sbjct: 294 V------TIYDAFTNETMFRYLLIGFLIGLAILVPVFLYFWRLFFK 333 >UniRef50_A0RL15 Cytochrome d ubiquinol oxidase, subunit II n=81 Tax=Bacillus RepID=A0RL15_BACAH Length = 364 Score = 41.8 bits (97), Expect = 0.042, Method: Composition-based stats. Identities = 42/301 (13%), Positives = 91/301 (30%), Gaps = 11/301 (3%) Query: 20 VVFMISDGFDMGIGCLLPLVARNDDERRIVINS-VGAHWEGNQVWLILAGGALFAAWPRV 78 V+ I D G G + A++ + N + WE +L+ A +P+ Sbjct: 39 FVYSILGSIDFGAGFWGMVYAKHPTLAAKLANRYLSPTWEVTNTFLVFVVVAFLGFFPKA 98 Query: 79 YAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAF 138 + +V ++L+L + R + + +++ + I L+ P + I Sbjct: 99 AFTLATVMFVPVMLILVLVAIRSTFMVFA--YSLPKYQHLLRIISGITGLLIPALL-ITV 155 Query: 139 GNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHL 198 + G + V G +P L L + ++L Sbjct: 156 LPVTEGAYITMSEGKEVLLYGKLLS--SPVIYCYMLFGLTSELFLSSLFLADFAREQGSE 213 Query: 199 RSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVL-----PGA 253 + +R A+++ L+ V +D P + VL Sbjct: 214 DAYKIYRRNAIILGPATLVTAIIALVVMDPETHWLMQGLIKQFPWFTVSIVLFVIGYSSL 273 Query: 254 WMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFV 313 W N S + + + + G +++ + FT T + + Sbjct: 274 WWTNKKYSTLGFPRIAVLAVVAQYAFASYAYGVAHLPYIIYPDVTVFTSFTTVETFYALL 333 Query: 314 M 314 + Sbjct: 334 I 334 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ABK4 Cytochrome d ubiquinol oxidase subunit 2 n=387 T... 348 2e-94 UniRef50_A4G4W0 Cytochrome d ubiquinol oxidase subunit 2 (Cytoch... 332 1e-89 UniRef50_A5F0M8 Cytochrome d ubiquinol oxidase, subunit II n=74 ... 329 1e-88 UniRef50_A6VVF5 Cytochrome d ubiquinol oxidase, subunit II n=22 ... 317 4e-85 UniRef50_D1BDL9 Cytochrome d oxidase cyd, subunit II n=2 Tax=Act... 311 3e-83 UniRef50_B3QXC1 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 305 2e-81 UniRef50_Q609X1 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 302 2e-80 UniRef50_Q2J1M0 Cytochrome d ubiquinol oxidase, subunit II n=83 ... 300 7e-80 UniRef50_B4SUI6 Cytochrome D ubiquinol oxidase, subunit II n=25 ... 295 2e-78 UniRef50_C5AXY0 Cytochrome d terminal oxidase, polypeptide subun... 287 5e-76 UniRef50_A1AN69 Cytochrome d ubiquinol oxidase, subunit II n=30 ... 287 6e-76 UniRef50_B2UM68 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 286 1e-75 UniRef50_B7GK13 Cytochrome bd-type quinol oxidase, subunit 2 n=2... 284 3e-75 UniRef50_A9KD50 Cytochrome d ubiquinol oxidase subunit II n=3 Ta... 284 5e-75 UniRef50_D1A2D3 Cytochrome d ubiquinol oxidase, subunit II n=34 ... 283 6e-75 UniRef50_P94365 Cytochrome d ubiquinol oxidase subunit 2 n=76 Ta... 282 1e-74 UniRef50_D1U471 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 281 3e-74 UniRef50_A0PP39 Integral membrane cytochrome D ubiquinol oxidase... 279 1e-73 UniRef50_C2C3U7 Cytochrome bd ubiquinol oxidase subunit II n=2 T... 277 3e-73 UniRef50_A7ZAA3 CydB n=16 Tax=Bacillales RepID=A7ZAA3_BACA2 277 4e-73 UniRef50_Q0BVW7 Cyanide-insensitive cytochrome bd-type quinol ox... 277 4e-73 UniRef50_A0KIS6 Cytochrome D ubiquinol oxidase, subunit II n=2 T... 277 4e-73 UniRef50_A5FZ08 Cytochrome d ubiquinol oxidase, subunit II n=15 ... 276 7e-73 UniRef50_O67371 Cytochrome oxidase d subunit II n=1 Tax=Aquifex ... 276 8e-73 UniRef50_B0TEW5 Cytochrome bd ubiquinol oxidase, subunit ii n=1 ... 276 1e-72 UniRef50_A8VUL7 Aspartate kinase n=1 Tax=Bacillus selenitireduce... 275 2e-72 UniRef50_D1R937 Putative uncharacterized protein n=1 Tax=Parachl... 274 3e-72 UniRef50_B0U137 Alkaline phosphatase n=18 Tax=Francisella RepID=... 274 4e-72 UniRef50_A7HAW4 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 272 1e-71 UniRef50_C8WEN7 Cytochrome d ubiquinol oxidase, subunit II n=14 ... 272 1e-71 UniRef50_C1DWD8 Cytochrome D ubiquinol oxidase, subunit II n=1 T... 272 1e-71 UniRef50_Q816N2 Cytochrome d ubiquinol oxidase subunit II n=73 T... 270 6e-71 UniRef50_C0W2T5 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 270 7e-71 UniRef50_C9KPM5 Cytochrome D ubiquinol oxidase, subunit II n=1 T... 266 9e-70 UniRef50_C7RCZ4 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 266 9e-70 UniRef50_B0VC09 Ubiquinol oxidase subunit II, cyanide insensitiv... 266 9e-70 UniRef50_Q5ZZ11 Cytochrome D ubiquinol oxidase subunit II, cyani... 264 5e-69 UniRef50_A5CR84 Cytochrome bd-type menaquinol oxidase subunit II... 262 1e-68 UniRef50_C7M6E4 Cytochrome d ubiquinol oxidase, subunit II n=7 T... 261 4e-68 UniRef50_B6WVU2 Putative uncharacterized protein n=1 Tax=Desulfo... 259 1e-67 UniRef50_D1RLM4 Cytochrome D ubiquinol oxidase subunit II n=1 Ta... 257 5e-67 UniRef50_Q4KA99 Cytochrome d ubiquinol oxidase, subunit II n=66 ... 255 2e-66 UniRef50_Q6MAP6 Putative cytochrome bd-I oxidase subunit II n=1 ... 254 3e-66 UniRef50_A8GFS1 Cytochrome d ubiquinol oxidase, subunit II n=19 ... 253 6e-66 UniRef50_A1R5L7 Cytochrome d ubiquinol oxidase, subunit II n=18 ... 253 8e-66 UniRef50_Q6ABD4 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 253 8e-66 UniRef50_Q1ILJ8 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 252 1e-65 UniRef50_B4U7P7 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 250 7e-65 UniRef50_D1BV47 Cytochrome d ubiquinol oxidase, subunit II n=7 T... 250 8e-65 UniRef50_Q2IFY9 Cytochrome d ubiquinol oxidase, subunit II n=5 T... 249 1e-64 UniRef50_C7MDJ2 Cytochrome d oxidase cyd, subunit II n=1 Tax=Bra... 249 1e-64 UniRef50_A0LSG2 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 249 1e-64 UniRef50_B1MXQ3 Cytochrome d ubiquinol oxidase, subunit II n=30 ... 249 1e-64 UniRef50_Q1J2Z7 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 247 6e-64 UniRef50_C2KAY6 Cytochrome d ubiquinol oxidase, subunit II n=5 T... 246 1e-63 UniRef50_A6W2X5 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 245 2e-63 UniRef50_A0LMS2 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 243 6e-63 UniRef50_B2SK06 Cytochrome D ubiquinol oxidase, subunit II n=5 T... 243 7e-63 UniRef50_B0UGT2 Cytochrome d ubiquinol oxidase, subunit II n=17 ... 242 1e-62 UniRef50_Q67RR5 Cytochrome D ubiquinol oxidase subunit II n=2 Ta... 242 2e-62 UniRef50_Q255C4 Cytochrome D oxidase subunit II n=14 Tax=Chlamyd... 242 2e-62 UniRef50_A2RMA6 Cytochrome d ubiquinol oxidase, subunit II n=5 T... 242 2e-62 UniRef50_Q0YUS4 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 241 2e-62 UniRef50_C0R3J3 Cytochrome d ubiquinol oxidase, subunit II n=31 ... 241 3e-62 UniRef50_D0XNI3 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 241 3e-62 UniRef50_C2KPN0 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 241 3e-62 UniRef50_C8WK01 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 240 6e-62 UniRef50_Q46G86 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 240 6e-62 UniRef50_B4RAL0 Cytochrome oxidase, subunit II n=2 Tax=Proteobac... 240 7e-62 UniRef50_C7HZB4 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 239 1e-61 UniRef50_B6IQW9 Ubiquinol oxidase subunit II, cyanide insensitiv... 238 2e-61 UniRef50_Q040K6 Cytochrome bd-type quinol oxidase, subunit 2 n=5... 234 4e-60 UniRef50_Q4UWQ0 Cytochrome D oxidase subunit B n=3 Tax=Xanthomon... 232 2e-59 UniRef50_B1VE35 Cytochrome d ubiquinol oxidase subunit 2 n=4 Tax... 230 4e-59 UniRef50_B8ESY7 Cytochrome d ubiquinol oxidase, subunit II n=4 T... 227 4e-58 UniRef50_A5FA89 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 227 4e-58 UniRef50_C8XGP9 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 225 3e-57 UniRef50_A4SZB4 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 224 3e-57 UniRef50_Q2JM63 Cytochrome d ubiquinol oxidase, subunit II n=30 ... 223 7e-57 UniRef50_B2IDR4 Cytochrome d ubiquinol oxidase, subunit II n=19 ... 222 1e-56 UniRef50_A7MEL0 Putative uncharacterized protein n=2 Tax=Cronoba... 221 3e-56 UniRef50_Q2SP33 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 221 3e-56 UniRef50_C2CTD2 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 220 6e-56 UniRef50_A6C9B8 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 215 2e-54 UniRef50_D2L7C6 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 215 3e-54 UniRef50_D2B3T8 Cytochrome oxidase subunit II n=1 Tax=Streptospo... 214 3e-54 UniRef50_C0XPN4 Cytochrome bd ubiquinol oxidase subunit II n=2 T... 213 7e-54 UniRef50_D0WHD0 Cytochrome D ubiquinol oxidase, subunit II n=1 T... 212 2e-53 UniRef50_Q1LCN4 Cytochrome d ubiquinol oxidase, subunit II n=69 ... 212 2e-53 UniRef50_A7I116 Cytochrome D ubiquinol oxidase, subunit II n=1 T... 210 9e-53 UniRef50_C4XJ24 Putative cytochrome d ubiquinol oxidase subunit ... 207 5e-52 UniRef50_C7N0L6 Cytochrome d oxidase cyd, subunit II n=1 Tax=Sla... 207 7e-52 UniRef50_A9ASF7 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 205 3e-51 UniRef50_C5A672 Cytochrome bd ubiquinol oxidase, subunit II (Cyd... 204 5e-51 UniRef50_B2JUZ0 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 204 6e-51 UniRef50_D0L0A7 Cytochrome d ubiquinol oxidase, subunit II n=3 T... 203 1e-50 UniRef50_A7ZG70 Cytochrome D ubiquinol oxidase, subunit II n=4 T... 202 3e-50 UniRef50_B3QK51 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 200 6e-50 UniRef50_B4RY64 Quinol oxidase, subunit II n=3 Tax=Gammaproteoba... 200 6e-50 UniRef50_UPI0001C321E0 cytochrome d ubiquinol oxidase, subunit I... 200 9e-50 UniRef50_Q03D44 Cytochrome bd-type quinol oxidase, fusion of sub... 199 1e-49 UniRef50_A0Q8B4 Cytochrome bd-II terminal oxidase subunit II n=1... 198 2e-49 UniRef50_C9Q1E8 Cytochrome D ubiquinol oxidase subunit II n=7 Ta... 197 6e-49 UniRef50_A6Q1A5 Cytochrome bd oxidase subunit II n=1 Tax=Nitrati... 194 5e-48 UniRef50_C6NVA4 Cytochrome d ubiquinol oxidase, subunit II n=4 T... 192 2e-47 UniRef50_B2RJL6 Cytochrome d ubiquinol oxidase subunit II n=56 T... 191 3e-47 UniRef50_B9Z1X7 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 191 4e-47 UniRef50_D2S1W8 Cytochrome d ubiquinol oxidase, subunit II n=2 T... 190 7e-47 UniRef50_A6LFA4 Cytochrome D ubiquinol oxidase subunit II n=13 T... 185 3e-45 UniRef50_C0G2G6 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 183 8e-45 UniRef50_A6W8I8 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 182 2e-44 UniRef50_B9L7C1 Cytochrome bd oxidase subunit II n=2 Tax=Nautili... 178 2e-43 UniRef50_D2B3F0 Cytochrome d ubiquinol oxidase subunit II n=1 Ta... 175 3e-42 UniRef50_UPI000038268B COG1294: Cytochrome bd-type quinol oxidas... 175 3e-42 UniRef50_C4DN93 Cytochrome d oxidase cyd, subunit II n=1 Tax=Sta... 172 2e-41 UniRef50_C7NNR2 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 171 5e-41 UniRef50_C6DYH0 Cytochrome bd ubiquinol oxidase subunit II n=3 T... 170 1e-40 UniRef50_C6XT47 Cytochrome bd ubiquinol oxidase subunit II n=7 T... 167 5e-40 UniRef50_C6VWT6 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 167 5e-40 UniRef50_D1CB62 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 163 7e-39 UniRef50_B9P917 Predicted protein n=7 Tax=cellular organisms Rep... 158 3e-37 UniRef50_B0R8N6 Cytochrome d ubiquinol oxidase subunit II n=2 Ta... 158 3e-37 UniRef50_A3ZTP2 Putative cytochrome d ubiquinol oxidase subunit ... 157 5e-37 UniRef50_A8V528 Beta and gamma crystallin:Cytochrome bd ubiquino... 154 5e-36 UniRef50_B5HKZ6 Cytochrome bd-I oxidase subunit II n=3 Tax=Strep... 154 6e-36 UniRef50_D2AUB4 Terminal oxidase subunit II n=1 Tax=Streptospora... 153 8e-36 UniRef50_Q2KVX4 Putative cytochrome oxidase D ubiquinol oxidase,... 153 1e-35 UniRef50_C0AEE2 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 151 3e-35 UniRef50_A7H8Z5 Cytochrome bd ubiquinol oxidase subunit II n=6 T... 149 2e-34 UniRef50_A0LZZ1 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 148 3e-34 UniRef50_A9AX76 Cytochrome bd ubiquinol oxidase subunit II n=2 T... 147 7e-34 UniRef50_C4DV22 Cytochrome d oxidase cyd, subunit II n=1 Tax=Sta... 147 9e-34 UniRef50_UPI0001B55F87 cytochrome bd-type menaquinol oxidase sub... 141 4e-32 UniRef50_Q2JGE7 Cytochrome bd ubiquinol oxidase, subunit II n=3 ... 140 7e-32 UniRef50_A6G8S6 Cytochrome bd ubiquinol oxidase, subunit II n=1 ... 138 2e-31 UniRef50_A9CZ56 Cytochrome bd ubiquinol oxidase, subunit II n=1 ... 138 4e-31 UniRef50_A4FDV9 Cytochrome d ubiquinol oxidase subunit II n=4 Ta... 137 6e-31 UniRef50_C1ZA12 Cytochrome bd-type quinol oxidase, subunit 2 n=1... 136 1e-30 UniRef50_B9TGE2 Putative uncharacterized protein n=1 Tax=Ricinus... 133 1e-29 UniRef50_C7QJB4 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 133 1e-29 UniRef50_D1SIK0 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 130 9e-29 UniRef50_C3DRT5 Cytochrome d ubiquinol oxidase subunit II n=2 Ta... 128 3e-28 UniRef50_D2B5X6 Cytochrome bd-type quinol oxidase subunit 2-like... 127 6e-28 UniRef50_UPI0001C31BDC Cytochrome bd-type quinol oxidase subunit... 126 1e-27 UniRef50_D2BDC9 Cytochrome d ubiquinol oxidase subunit II n=1 Ta... 123 1e-26 UniRef50_D1A755 Cytochrome bd ubiquinol oxidase subunit II n=1 T... 121 3e-26 UniRef50_A8EQ33 Cytochrome D ubiquinol oxidase subunit II n=1 Ta... 121 6e-26 UniRef50_Q937L0 Cytochrome d terminal oxidase (Fragment) n=1 Tax... 113 8e-24 UniRef50_C1YQX5 Cytochrome bd-type quinol oxidase, subunit 2 n=1... 110 6e-23 UniRef50_C9LLF6 CydB n=1 Tax=Dialister invisus DSM 15470 RepID=C... 103 9e-21 UniRef50_Q47RW4 Putative cytochrome D ubiquinol oxidase subunit ... 96 2e-18 UniRef50_D1NY02 Cyanide-insensitive oxidase CioB n=1 Tax=Provide... 93 1e-17 UniRef50_A8V4U0 Cytochrome d ubiquinol oxidase, subunit II n=1 T... 82 4e-14 UniRef50_B3SF07 Putative uncharacterized protein n=1 Tax=Trichop... 77 9e-13 UniRef50_B2SHW9 Cytochrome D ubiquinol oxidase subunit II n=2 Ta... 75 3e-12 UniRef50_B2JRW5 Cytochrome bd ubiquinol oxidase subunit I n=1 Ta... 70 1e-10 UniRef50_Q88HL8 Ubiquinol oxidase subunit II-related protein n=1... 61 6e-08 UniRef50_UPI000191363F hypothetical protein Salmonellaentericaen... 56 2e-06 Sequences not found previously or not previously below threshold: UniRef50_Q5WII1 Cytochrome d ubiquinol oxidase subunit II CydB n... 60 2e-07 UniRef50_A0RL15 Cytochrome d ubiquinol oxidase, subunit II n=81 ... 56 1e-06 UniRef50_B1HTX5 Cytochrome d ubiquinol oxidase subunit II n=2 Ta... 56 2e-06 UniRef50_O34505 Uncharacterized membrane protein ythB n=12 Tax=B... 54 7e-06 UniRef50_C4L5A7 Cytochrome d ubiquinol oxidase subunit II n=83 T... 52 4e-05 UniRef50_C8Q5N5 Putative uncharacterized protein n=1 Tax=Pantoea... 49 4e-04 UniRef50_A7B8V6 Putative uncharacterized protein n=1 Tax=Actinom... 45 0.004 UniRef50_B5HB50 Integral membrane protein n=10 Tax=Actinomycetal... 44 0.007 UniRef50_B6B0F2 Cytochrome bd ubiquinol oxidase, subunit II n=1 ... 43 0.014 UniRef50_C2BRT8 Possible PTS system, glucose-specific IIBC compo... 43 0.021 UniRef50_Q8CPN5 Cytochrome d ubiquinol oxidase subunit II-like p... 41 0.065 UniRef50_C4V035 Integral membrane protein WxcO n=2 Tax=Yersinia ... 41 0.093 >UniRef50_P0ABK4 Cytochrome d ubiquinol oxidase subunit 2 n=387 Tax=Bacteria RepID=CYDB_ECO57 Length = 379 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 218/379 (57%), Positives = 278/379 (73%), Gaps = 1/379 (0%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M DYE LRFIWWLL+GV+L+ F ++DGFDMG+G L + RND ERRI+INS+ HW+GN Sbjct: 1 MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGN 60 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 QVWLI AGGALFAAWP VYAAAFSGFYVAMILVL SLFFRP+ FDYR KI + RWR MWD Sbjct: 61 QVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWD 120 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 G+ IGS VPP+V G+AFGNLL GVPF LR+ Y G+F+QLL PF LL G++S+GM+ Sbjct: 121 WGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMI 180 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVL-LAQDANGP 239 I QG +LQ++TVG +HLR++ + AAL+ ++CF LAG W+ GIDG+V+ D Sbjct: 181 ITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299 SNPL K V GAW+ NF +P+LW P LG PLLT++ + W F+ +SL Sbjct: 241 SNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLA 300 Query: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359 +I TAGI +FPFVMPSS +SLT+WD+TSSQLTL++M + ++ +PI+LLYT W Y+ Sbjct: 301 CIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYW 360 Query: 360 KMWGRMTTETLRRNENELY 378 KM+GR+T E + RN + LY Sbjct: 361 KMFGRITKEDIERNTHSLY 379 >UniRef50_A4G4W0 Cytochrome d ubiquinol oxidase subunit 2 (Cytochrome d ubiquinol oxidase subunit II) (Cytochrome bd-I oxidase subunit II) n=37 Tax=Bacteria RepID=A4G4W0_HERAR Length = 384 Score = 332 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 179/379 (47%), Positives = 247/379 (65%), Gaps = 1/379 (0%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 + DY+ LR WW LIGV+L+ F ++DGFD+G G LLP VARND ERR+VINSVG WEGN Sbjct: 6 LIDYDILRLTWWALIGVLLLAFAVTDGFDLGTGILLPFVARNDIERRVVINSVGPVWEGN 65 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 QVWLIL GGA+FAAWP++YA AFSGFY+AM +L +L RP+AF +R K D WR WD Sbjct: 66 QVWLILGGGAIFAAWPQLYAVAFSGFYLAMFAILVALILRPVAFKFRSKREDPGWRARWD 125 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 L VP ++FG+A GN+L GVPF + + Y GSF+ LL PF LLCGL+S+ M+ Sbjct: 126 GVLFFSGFVPSLIFGVALGNVLQGVPFRLDLDMHIFYEGSFFGLLNPFALLCGLVSVAML 185 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQ-DANGP 239 + G WLQLKT GV+ R++ AAL +L + AG LW +DG+ + + D GP Sbjct: 186 AMHGSAWLQLKTDGVVAERARRYGSMAALATVLLYGCAGLLLWKYVDGYRISSMIDPVGP 245 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299 SNPL+K V GAW N+ P P+LG + + + R + L +++ Sbjct: 246 SNPLLKTVEGHAGAWFVNYTAQPWTMAAPVLGLLGAIGAWLGLRMRREIFTLLCSAVSIS 305 Query: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359 G++ + G ++FPF++PSS+ P +SLT+WDS+SS LTL IMLV+ +IF+PI++ YT W Y+ Sbjct: 306 GIVLSVGASMFPFILPSSIHPAASLTVWDSSSSHLTLFIMLVVSVIFIPIIVAYTTWVYH 365 Query: 360 KMWGRMTTETLRRNENELY 378 +WG++ + +R Y Sbjct: 366 VLWGKVDEKAIRDETGHAY 384 >UniRef50_A5F0M8 Cytochrome d ubiquinol oxidase, subunit II n=74 Tax=Gammaproteobacteria RepID=A5F0M8_VIBC3 Length = 378 Score = 329 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 170/378 (44%), Positives = 249/378 (65%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 MF+Y+TLR IWW LIG +L+ FMI+DGFDMG+G LLP++ +++ ++R++INS+ HW+GN Sbjct: 1 MFEYDTLRLIWWGLIGALLIGFMITDGFDMGVGALLPILGQSESDKRVMINSIAPHWDGN 60 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 QVWLI AGGALFAAWP VYA +FS Y+AM L+L +L+ RPLA +YR KI WRK+ D Sbjct: 61 QVWLITAGGALFAAWPLVYATSFSSLYIAMYLILLALWLRPLALEYRAKIDTPSWRKICD 120 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 + + L+PP++FG+AFGNL+ G+PF+ L V+Y GSF L+TPF +L G + + M Sbjct: 121 ISISLSGLIPPLLFGVAFGNLMQGLPFSLNALLMVDYHGSFIDLITPFSVLSGGIGVLMA 180 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 ++QG WL LKT ++H +++L + + L + F++ G+ + ++ + D N S Sbjct: 181 LVQGSAWLTLKTSDILHKKARLTAQISVLCLFGLFIIGGFMVHGMNGYLIVSSLDYNAIS 240 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 NPL K+V GAW+ NF P +W P+ G + ++ F+ AS+ Sbjct: 241 NPLNKVVFQQAGAWLTNFERYPWMWFAPMGGLMMAMGVFLSAKWKNDAITFVCASVTNAC 300 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 +I TAG +FPF+MPSS P SLTLWD+TSS+ TL+IM + + LPI+L YT +SY Sbjct: 301 IILTAGFAMFPFIMPSSFEPSHSLTLWDATSSERTLNIMTGVAFVMLPIILFYTAFSYRT 360 Query: 361 MWGRMTTETLRRNENELY 378 M+GR+ + + RN + LY Sbjct: 361 MFGRLDKQYIERNHHSLY 378 >UniRef50_A6VVF5 Cytochrome d ubiquinol oxidase, subunit II n=22 Tax=Proteobacteria RepID=A6VVF5_MARMS Length = 378 Score = 317 bits (813), Expect = 4e-85, Method: Composition-based stats. Identities = 197/378 (52%), Positives = 262/378 (69%), Gaps = 1/378 (0%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 DYE L+ IWW+LIGV+L+ F ++DGFDMG+G LL ++ ND ERR++INS+ HW+GNQ Sbjct: 1 MDYELLKVIWWVLIGVLLIGFSVTDGFDMGVGSLLKIIGGNDSERRVMINSIAPHWDGNQ 60 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VW I AGGALFAAWP VYA +FSGFY AM+LVL +LFFRP+ FDYR K+ + +WR WD Sbjct: 61 VWFITAGGALFAAWPVVYATSFSGFYFAMMLVLAALFFRPIGFDYRSKLENTKWRNGWDW 120 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 G+ GS VPP++FG+AFGNLL GVPF F LRV Y GSF+ LL PF +LCGL+SL M++ Sbjct: 121 GITFGSAVPPIIFGVAFGNLLQGVPFEFDQYLRVTYTGSFFALLNPFAILCGLVSLLMLM 180 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQ-DANGPS 240 QGG WLQ+KT + ++ T L + F++AG WL GIDG+VL + D N Sbjct: 181 TQGGAWLQMKTDDALLEKASRITAITGALAAVLFIIAGVWLAYGIDGYVLTSSIDGNKVM 240 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 PLMK V PGAW+ N+ + P L + P++G L + + FL +SL G Sbjct: 241 TPLMKTAEVQPGAWLANYDKVPALMLAPIIGIAGMLFAAITAVMRKGALSFLSSSLGIAG 300 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 +I TAG ++FPF+MPSS P SLT+WD+TSS+ T+ IM V+ IF+PIVL+YTLW+Y+ Sbjct: 301 IIVTAGGSMFPFLMPSSSYPSMSLTMWDATSSENTMMIMFVVACIFVPIVLIYTLWNYFV 360 Query: 361 MWGRMTTETLRRNENELY 378 M+GR+T + + N + LY Sbjct: 361 MYGRLTKKHIEENNHSLY 378 >UniRef50_D1BDL9 Cytochrome d oxidase cyd, subunit II n=2 Tax=Actinomycetales RepID=D1BDL9_SANKS Length = 368 Score = 311 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 116/372 (31%), Positives = 200/372 (53%), Gaps = 37/372 (9%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 D ETL+ +W++LI V+ +++ +GFD G+G L+P++ R + +RR++IN++G W+GN+ Sbjct: 1 MDLETLQVLWFVLIAVLWTGYLVLEGFDFGVGMLMPILGRKEKDRRVMINTIGPVWDGNE 60 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWL+ AGGA FAA+P YA+ FSGFY+ + ++L L R + F+YR KI DA WR+ WDA Sbjct: 61 VWLLTAGGATFAAFPEWYASLFSGFYIPLFIILICLIVRGMGFEYRSKINDATWRRRWDA 120 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 ++IGS +P +++G+AF NL+ GV G F+ LL+PF LL G++++ + + Sbjct: 121 SVIIGSWLPSILWGVAFANLVRGVEMDAN----HTMTGGFFSLLSPFALLGGVVTMLLFL 176 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 G V++ LKT G I +R++ ++ ++ W + Sbjct: 177 THGAVFVALKTEGDIRVRARRLAGMFSVASVVAAGGWALWAQLA---------------- 220 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 + W + + V++ R R GW F ++L Sbjct: 221 -----------------YGTTWTWGAVAVAAAALVAVVVSNARAREGWAFFWSALAILAA 263 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 + +++P VMP+S P +SL + +++S++ TL++M + L P+VLLY W+Y+ Sbjct: 264 VVLIFGSMYPDVMPASNDPANSLNIRNASSTEYTLTVMTWVALFLTPLVLLYQSWTYWVF 323 Query: 362 WGRMTTETLRRN 373 R+ T + Sbjct: 324 RKRIGTHHIPEP 335 >UniRef50_B3QXC1 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QXC1_CHLT3 Length = 359 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 123/364 (33%), Positives = 200/364 (54%), Gaps = 9/364 (2%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW+LLIGV+L+ + I DGFD+G+G L L+A++D+ERR+++NS+G W+GN+VWLI Sbjct: 3 LNTIWYLLIGVLLIGYAILDGFDLGVGAL-HLLAKDDNERRLLLNSIGPVWDGNEVWLIT 61 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GGALFAA+P YA AFSGFY+A +L+L SL R ++ ++R K WR WD IG Sbjct: 62 GGGALFAAFPHAYATAFSGFYLAFMLLLVSLISRAVSIEFRSKRESQAWRNFWDYSFSIG 121 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S++ ++FG+A GN++ G+ +EY G+F+ LLTP+ +L G+ +L + + G + Sbjct: 122 SVLSAILFGVAIGNMVAGIKIGSD----MEYAGTFFDLLTPYTVLAGVFNLALFTMHGAI 177 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 +L +KT G + R + RA + + +++ + Sbjct: 178 YLFVKTEGDLQERVKGWAMRAFFVFLALYVIVTAATLYMKPEMIANFSFGKIQPATGSAH 237 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 + N V S WI +L + G+ FL ++ ++F Sbjct: 238 ELIQS----NQVVISVFAWIIVILNGLAIANIPRTLVHGKELQAFLSSACTIAALVFLFA 293 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 + +FP ++ SS+ P SLT++++ SS+ TL ML++ LI +P+VL YT+ Y+ G+ T Sbjct: 294 VGVFPNMITSSLDPAYSLTIYNAASSEKTLFTMLIMALIGMPLVLSYTISIYWVFRGKTT 353 Query: 367 TETL 370 Sbjct: 354 ITKH 357 >UniRef50_Q609X1 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Methylococcus capsulatus RepID=Q609X1_METCA Length = 378 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 169/378 (44%), Positives = 235/378 (62%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 MFDYET+R IWW++ G + F+++ GFD GIG LLP + RND ERR+VIN++G W+GN Sbjct: 1 MFDYETMRVIWWVITGAVATGFVLTVGFDFGIGALLPFIGRNDVERRVVINTIGPTWDGN 60 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 QVWLIL GGA+FA WP VYA FSG Y+AM+LVL +LFFRP+ FDYR K+ +WR WD Sbjct: 61 QVWLILLGGAIFAVWPAVYATLFSGLYIAMLLVLYTLFFRPVGFDYRSKLESPQWRTAWD 120 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 GL IG VPPV+ G+ GNLL+G+PF LR Y GSFW LLTPFPLLCG++ L Sbjct: 121 WGLFIGGAVPPVLMGVLVGNLLVGLPFHLDGSLRTFYDGSFWGLLTPFPLLCGVIGLLAC 180 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 + G V+L +T I R++ ++++L +LA W+ +GI +L Sbjct: 181 VFHGAVYLGCRTERPIEQRARRVAAIGGVVLVLLMILAAAWVILGIPRPEILTMAGPNAP 240 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 + M G+W+ NF+ P L++ P L GR F +++ G Sbjct: 241 SNPMAKTVDFSGSWLGNFLAHPRLFVAPALAVLGVSAAAALAGSGRSAAAFAASAVGMGG 300 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 +++T G LFPF++ S+ P SSLT+WD+++S L L L I L+FLPIVLLYT W+Y Sbjct: 301 LLWTVGFGLFPFMLISTTDPRSSLTIWDASASHLNLQWSLAITLMFLPIVLLYTRWAYRV 360 Query: 361 MWGRMTTETLRRNENELY 378 +WG++T + + ++ LY Sbjct: 361 IWGKVTVADIAKGDHTLY 378 >UniRef50_Q2J1M0 Cytochrome d ubiquinol oxidase, subunit II n=83 Tax=Bacteria RepID=Q2J1M0_RHOP2 Length = 383 Score = 300 bits (768), Expect = 7e-80, Method: Composition-based stats. Identities = 201/383 (52%), Positives = 265/383 (69%), Gaps = 5/383 (1%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M DYETL+F+WW+ +G++L+ F I+DG DMG+G LLP VAR D ERRI INSVG HW+GN Sbjct: 1 MLDYETLKFVWWIFVGLLLMGFAITDGMDMGVGTLLPFVARKDVERRIAINSVGPHWDGN 60 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 QVW I AGGA+FAAWP VYAAAFSGFY+AM+LVL +LFFRP+ FDYR KI + WR WD Sbjct: 61 QVWFITAGGAIFAAWPAVYAAAFSGFYMAMLLVLFALFFRPVGFDYRSKIENPTWRNAWD 120 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGS----FWQLLTPFPLLCGLLS 176 GL G +P ++FG+AFGNLL GVPF LR Y GS LL PF LL G++S Sbjct: 121 WGLFAGGAIPALIFGVAFGNLLQGVPFRLDELLRSHYQGSLLTALLPLLNPFALLAGVIS 180 Query: 177 LGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDA 236 L M+ GGVWLQL+ G + R++ A + +V + F LAG WLW+G+DG+ ++ + A Sbjct: 181 LAMLAAHGGVWLQLRASGAVADRARKAVLLLSPIVAVAFALAGVWLWLGVDGYRIVKEAA 240 Query: 237 N-GPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMAS 295 + SNPL K V PGAW++ + + P+ I P LG PLLT++ RPG F+ ++ Sbjct: 241 HSAASNPLAKEVVRAPGAWLDIYAKQPLAMIVPALGLVGPLLTMLLAAVHRPGLAFVTSA 300 Query: 296 LMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTL 355 G+I TAG+++FPF+MPSS+ P SSLT+WD+ SS+LTL++M V+IFLPIVL YT+ Sbjct: 301 FGMIGIIGTAGLSMFPFIMPSSIDPRSSLTIWDAASSELTLTVMFWAVVIFLPIVLGYTV 360 Query: 356 WSYYKMWGRMTTETLRRNENELY 378 W Y MWGR+T + + + Y Sbjct: 361 WCYANMWGRVTADEIEARAHSAY 383 >UniRef50_B4SUI6 Cytochrome D ubiquinol oxidase, subunit II n=25 Tax=Salmonella enterica subsp. enterica RepID=B4SUI6_SALNS Length = 378 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 304/378 (80%), Positives = 338/378 (89%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M DYETLRFIWWLLIGVILV FM++DGFDMG+GCLLPL+ARNDDERR++INSVGAHWEGN Sbjct: 1 MLDYETLRFIWWLLIGVILVAFMVTDGFDMGVGCLLPLIARNDDERRVLINSVGAHWEGN 60 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLC+LFFRPLAFDYRGKIA+ARWR +WD Sbjct: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCALFFRPLAFDYRGKIANARWRALWD 120 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 GLVIGSLVPPVVFGIAFGNL LGVPFAFTPQL V+Y G+FWQLL+PF LLCGLLSL +V Sbjct: 121 TGLVIGSLVPPVVFGIAFGNLFLGVPFAFTPQLHVDYFGTFWQLLSPFALLCGLLSLSLV 180 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 I+QGGVWLQLKT GVI R+ AT+ +ALL+++CFLLAGYWLW G+DGFVLL QDANGPS Sbjct: 181 IMQGGVWLQLKTEGVIRQRALSATRHSALLIVICFLLAGYWLWAGVDGFVLLTQDANGPS 240 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 NPL+K VA+LPGAWMN+F+ SP+L I PLLG P+L A RG+ GFL ASL Q Sbjct: 241 NPLLKGVAILPGAWMNHFIRSPLLLIIPLLGMILPILAFYACLRGQTIRGFLFASLTQAC 300 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 VIFTAGITLFPFVMPSSVSP+SSLT+WDSTSSQ+TL IMLVIVLIFLPIVLLYTLWSYYK Sbjct: 301 VIFTAGITLFPFVMPSSVSPLSSLTVWDSTSSQMTLEIMLVIVLIFLPIVLLYTLWSYYK 360 Query: 361 MWGRMTTETLRRNENELY 378 M GR+ ETLRRN++ELY Sbjct: 361 MLGRINLETLRRNDHELY 378 >UniRef50_C5AXY0 Cytochrome d terminal oxidase, polypeptide subunit II n=6 Tax=Alphaproteobacteria RepID=C5AXY0_METEA Length = 384 Score = 287 bits (734), Expect = 5e-76, Method: Composition-based stats. Identities = 178/380 (46%), Positives = 239/380 (62%), Gaps = 2/380 (0%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 + DYE+LR IWW+L+GV+L+ F ++DGFD+G+G LLP V R D ERR+ I++V A WEGN Sbjct: 5 LSDYESLRLIWWVLLGVLLIGFAVTDGFDLGVGALLPFVGRTDVERRVAIHTVSATWEGN 64 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 QVWL+L GGA+FAAWP +YA +FSGFY+AM LVL +L RP+AF YR K A A WR WD Sbjct: 65 QVWLVLGGGAIFAAWPALYALSFSGFYLAMFLVLFALILRPVAFKYRSKRASAAWRSRWD 124 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 L +G VP ++FG+A GN+L GVPF FT LR Y GS LL P LLCGL+SL M+ Sbjct: 125 WALFVGGAVPALIFGVAVGNVLQGVPFHFTGDLRPIYGGSLLGLLNPLALLCGLVSLVML 184 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGI--DGFVLLAQDANG 238 + G WL K G + R++ +AAL F L G +W G V+ +G Sbjct: 185 VAHGAAWLAFKAEGAVAERARAIGLKAALATAALFTLGGLLIWAGAFGGYRVVSPLPGDG 244 Query: 239 PSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQ 298 PSNPL K V GAW+ NF P L + PLLG PLL + G FL +SL Sbjct: 245 PSNPLTKAVVADAGAWLANFRAHPALALVPLLGIVGPLLAALGFRARHEGLTFLASSLGI 304 Query: 299 FGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSY 358 +I T G+++FP ++PS+ P +LT++D++SS+ TL ML+ +IFLPI+L YT W Y Sbjct: 305 ACIIATVGLSMFPVILPSNTHPGHALTVFDASSSRATLRNMLIATVIFLPIILAYTAWVY 364 Query: 359 YKMWGRMTTETLRRNENELY 378 +WG+++ + + Y Sbjct: 365 RVLWGKVSDRDITAPGSAAY 384 >UniRef50_A1AN69 Cytochrome d ubiquinol oxidase, subunit II n=30 Tax=Bacteria RepID=A1AN69_PELPD Length = 351 Score = 287 bits (734), Expect = 6e-76, Method: Composition-based stats. Identities = 127/375 (33%), Positives = 201/375 (53%), Gaps = 27/375 (7%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 + + IW++L GV+ + ++DGF +G G + +A++D ERR++IN+VG W+GN+ Sbjct: 1 MEAHAFQIIWFVLWGVLWSFYFMTDGFVLGTGFMSGFLAKSDTERRVLINTVGPIWDGNE 60 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWL+ AGGA FAA+P YA FS Y A++L+L +L R +AF++RGKI W+K WD Sbjct: 61 VWLVTAGGATFAAFPTTYALMFSNLYTALLLLLFALIVRGVAFEFRGKIDSPSWKKGWDR 120 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRV-EYLGSFWQLLTPFPLLCGLLSLGMV 180 + I S +P ++FG+AFGN+ G+P + Y GS LL P+ LL G+L + + Sbjct: 121 AITIASFLPSLLFGVAFGNIFKGIPMRNDFSASIFAYDGSLLTLLNPYGLLTGILFVMLF 180 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 + G ++ +KT G + R+ R ++ +L + Sbjct: 181 AVHGSLYAAIKTTGDLSQRAAAMANRLWFPLLAVAVLFLGATY----------------- 223 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 +N+++SP+L I PL+ LL + R R FL + L Sbjct: 224 ---------PATRLYDNYLKSPLLLIIPLIAVSSLLLVKLYASRDRLHMAFLFSCLTIVF 274 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 V +T LFP ++PSS+ P S+LT+++S+SS LTL IM + LIF+PIV+ Y W Y Sbjct: 275 VCYTGVAGLFPNLIPSSIDPASNLTIYNSSSSLLTLKIMTGVALIFVPIVIAYKAWVYRI 334 Query: 361 MWGRMTTETLRRNEN 375 R+T+E + + Sbjct: 335 FRARVTSEDVLESSE 349 >UniRef50_B2UM68 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UM68_AKKM8 Length = 345 Score = 286 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 109/370 (29%), Positives = 189/370 (51%), Gaps = 30/370 (8%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 L+ IW++L+GV+ + I DGFD+G G L + + D+ RR+ +N+VG W+GN+ Sbjct: 5 LTLADLQIIWFILVGVLFSGYAILDGFDLGTGALQLFI-KGDENRRLTLNAVGPVWDGNE 63 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWLI GGALFAA+P VYA+ FSGFY+A +L+L +L FR ++ ++R K WR+ WD Sbjct: 64 VWLITGGGALFAAFPYVYASVFSGFYLAFMLLLLTLIFRAVSIEFRSKQPMKWWRRGWDT 123 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 I SL+ ++ G+A GN+ G+P + G+F LL P+ +L GL ++ + Sbjct: 124 TFSISSLLAALLIGVAMGNVTKGIPLD----DHGNFTGTFLSLLNPYSILLGLTTVALFS 179 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 + GG++L +KT G + + + + ++ + +L G + + + Sbjct: 180 MHGGIYLLMKTQGSLQEQIRKLLRPCVIIFTVLIILHGAATLLYVPHVAAALE------- 232 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 SP ++ L + I+R RPGW F+ + + Sbjct: 233 ------------------RSPWIYGIAALAVISIASIWIFIHRNRPGWAFVASCSTMGCM 274 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 + G +FP ++ S +P SLTL + +S++ +L +M I ++ +P+VL Y+ Y+ Sbjct: 275 MALFGTAMFPNLLYSMPNPEHSLTLANGSSTRESLVVMTYIAILGVPLVLAYSAAIYWVF 334 Query: 362 WGRMTTETLR 371 G++ Sbjct: 335 RGKVQLNEHS 344 >UniRef50_B7GK13 Cytochrome bd-type quinol oxidase, subunit 2 n=2 Tax=Bacillaceae RepID=B7GK13_ANOFW Length = 360 Score = 284 bits (728), Expect = 3e-75, Method: Composition-based stats. Identities = 125/373 (33%), Positives = 194/373 (52%), Gaps = 31/373 (8%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 +E + IW+ L G+I ++ + DG+ +G G L P +ARN ER + +VG W GN+ Sbjct: 19 MSHEMVAIIWFGLWGLIWTIYFVLDGYTLGTGMLFPFLARNRQERNQLQEAVGPFWGGNE 78 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWLI AGGA FAA+P VYA FS Y M+L+L +LFFR ++ K W+K W Sbjct: 79 VWLITAGGATFAAFPAVYADLFSFLYTPMMLILFALFFRAAGLEFMHKDDAPLWQKSWKW 138 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 I S ++FG+AF NL G+ + Y G+F+ LL P+ LL GLL + + I Sbjct: 139 AFTISSFALALLFGVAFANLFYGLKIGPSG-----YEGTFFSLLHPYGLLGGLLFISLFI 193 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 + G +W+ LK VG + R+ + AA++ + L F Sbjct: 194 VSGALWVMLKAVGEVAERAYAVARPAAIIATVILSLFFVATSNRTPLF------------ 241 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 +NF ++P+LW+ P L F C LL ++ +++ R G F L F + Sbjct: 242 --------------HNFTKAPILWVVPALTFVCALLMLLFVWQKRIGLAFTNICLTIFTL 287 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 + T I +FP ++PS ++ S TL+++ S+L L IML + ++ +PIV+ Y LWSY Sbjct: 288 MATGFIGMFPNMLPSRINDEYSTTLFEAAGSELNLKIMLGVAIVMVPIVVGYQLWSYKLF 347 Query: 362 WGRMTTETLRRNE 374 ++T ET + + Sbjct: 348 KEKITKETAKGYQ 360 >UniRef50_A9KD50 Cytochrome d ubiquinol oxidase subunit II n=3 Tax=Coxiella burnetii RepID=A9KD50_COXBN Length = 381 Score = 284 bits (726), Expect = 5e-75, Method: Composition-based stats. Identities = 140/378 (37%), Positives = 227/378 (60%), Gaps = 1/378 (0%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 + +Y L+ +WW++IG ILVV+ + GFD G+ ++P + RN+ +RRI++N+ W+GN Sbjct: 3 LLNYTFLKVVWWMIIGSILVVYASTAGFDSGVTMIMPFL-RNETQRRILLNTSAPVWDGN 61 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 W++ AGG LF WP VY+ AFSG Y+ ++ ++ SLF RP +DYRGK+ WR+ WD Sbjct: 62 LTWILFAGGGLFVVWPVVYSTAFSGLYLILLFIMWSLFLRPPGYDYRGKLPSPIWRRSWD 121 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 L I S+VP FG+AFGN LLG PF F R Y GS+++L F +L G S+ MV Sbjct: 122 VALFISSIVPVFFFGLAFGNCLLGFPFHFDSLFRDYYTGSWFELFNGFGILSGTASVLMV 181 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 ++ G ++Q +T G + + A +L+ + F +AG + I G+ L++ + Sbjct: 182 LMHGSAYIQRRTEGDLRELGRRIHYIATVLLTIAFSVAGLLVLYRIKGYTLISYPKDATI 241 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 PL +V GAW+N++ P + P+ + +LT+++ + + F ++L G Sbjct: 242 YPLNNVVIRSVGAWLNSYNHHPWKYFGPIFAYLGIILTLLSNFFRWYTFCFWSSALAIMG 301 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 +I T G TLFPF+MPSS +P SLT+W++TSSQ L++ML + +I ++L Y L++Y+ Sbjct: 302 LIGTIGFTLFPFIMPSSTAPDQSLTVWNATSSQYGLNVMLYVGVILFIVILGYKLYAYHT 361 Query: 361 MWGRMTTETLRRNENELY 378 +W + T T + E + + Sbjct: 362 IWSKQKTITEKDLETDKH 379 >UniRef50_D1A2D3 Cytochrome d ubiquinol oxidase, subunit II n=34 Tax=Bacteria RepID=D1A2D3_THECD Length = 363 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 194/369 (52%), Gaps = 42/369 (11%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVA-----RNDDERRIVINSVGAHWEGNQ 61 L +W+LLI V+ + + +GFD G+G L+P++A +D +RR++IN++G W+GN+ Sbjct: 3 LTTVWFLLIAVLWAGYFLLEGFDFGVGVLMPVLAPRKAAHSDTDRRVMINTIGPVWDGNE 62 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWL++AGGA FAA+P YA+ FSGFY+A++L+L +L R +AF+YRGK+ RWR+ WD Sbjct: 63 VWLLVAGGATFAAFPEWYASLFSGFYLALLLILAALIVRGVAFEYRGKVDSDRWRRNWDL 122 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 + GS VP +++G+AF N+L GVP + Y G+ LL P+ LL GL +L + Sbjct: 123 AIFWGSAVPALLWGVAFANILQGVPLDA----QHHYTGTLLTLLNPYALLGGLTTLTVFT 178 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 L G V+L LKT G + +++ A + A + V Sbjct: 179 LHGAVFLALKTRGHVRDQARRAVRYLAAPTVAIAAAFLVITGVR---------------- 222 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 P W + V A RGR GW F ++ Sbjct: 223 -----------------FGVPWTWATTAVAALALAGGVAAALRGRDGWAFTGTAVAIVAT 265 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 + T L+P V+PS++ P SLT+ ++ S+ TL +M + +IF PIVL Y W+Y+ Sbjct: 266 VATMFGDLWPAVLPSTIDPAYSLTVENAASTPYTLKVMTWVAVIFTPIVLAYQAWTYWVF 325 Query: 362 WGRMTTETL 370 R+T E + Sbjct: 326 RKRLTREAI 334 >UniRef50_P94365 Cytochrome d ubiquinol oxidase subunit 2 n=76 Tax=Bacillales RepID=CYDB_BACSU Length = 338 Score = 282 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 99/366 (27%), Positives = 173/366 (47%), Gaps = 32/366 (8%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 +L +W++L+ V+ V F +GFD G+G + N+ ERR++IN++G W+ N+VW Sbjct: 1 MASLHDLWFILVAVLFVGFFFLEGFDFGVGMATRFLGHNELERRVLINTIGPFWDANEVW 60 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L+ GA+FAA+P YA SG+Y+ ++VL +L R +AF++RGK+ +W K+WD + Sbjct: 61 LLTGAGAIFAAFPNWYATMLSGYYIPFVIVLLALMGRGVAFEFRGKVDHLKWVKVWDWVV 120 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 GSL+PP V G+ F L G+P + + + +L G+ + Sbjct: 121 FFGSLIPPFVLGVLFTTLFRGMPIDADMNIHAHVS----DYINVYSILGGVTVTLLCFQH 176 Query: 184 GGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPL 243 G +++ L+T+G + R++ ++ +V + L D F + Sbjct: 177 GLMFITLRTIGDLQNRARKMAQKIMGVVFVAVLAFAALSAYQTDMFTRRGE--------- 227 Query: 244 MKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIF 303 + +L C +L + I + + GW F M + Sbjct: 228 -------------------ITIPLAVLIVICFMLAAVFIRKKKDGWTFGMTGAGLALTVG 268 Query: 304 TAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 I+LFP VM SS+ LT+ +++S +L +M + L LP V+ +WSYY Sbjct: 269 MIFISLFPRVMVSSLHSAYDLTVANASSGDYSLKVMSIAALTLLPFVIGSQIWSYYVFRK 328 Query: 364 RMTTET 369 R++ + Sbjct: 329 RVSHKE 334 >UniRef50_D1U471 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U471_9DELT Length = 350 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 118/369 (31%), Positives = 195/369 (52%), Gaps = 30/369 (8%) Query: 3 DYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQV 62 + L IW++L GV+ V+ I DGFD+G+G LLP +A+N+DE+R ++NS G W+GN+V Sbjct: 11 MHYYLAVIWFVLWGVLWAVYFILDGFDLGVGTLLPFMAKNEDEKRAMLNSTGPFWDGNEV 70 Query: 63 WLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAG 122 WLI AGG FAA+P YA FSG Y A++L+L +L R ++F++R K+ A WRK+WD Sbjct: 71 WLITAGGVTFAAFPYAYAQMFSGLYTALMLLLFALIVRGVSFEFRSKVESASWRKLWDTC 130 Query: 123 LVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVIL 182 +GS +P ++ G+AF N+ G+P T + + LL P+ L G+L + + ++ Sbjct: 131 HAVGSFLPALLLGVAFANIFRGLPLDETGFSQ----AGLFGLLNPYGLAGGVLFVIIFVM 186 Query: 183 QGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNP 242 G +WL ++ G + R++ + + ++ +L + V Sbjct: 187 HGALWLCIRATGDLRARAEGLAVKLWPIQVVLTVLFLAYSAVETQ--------------- 231 Query: 243 LMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVI 302 +N+ PVL++ L +L + G+ + + L G Sbjct: 232 -----------LFSNYFLYPVLFVILALPVAGLVLMRAYMGAGKWWMAWGSSCLYIGGTA 280 Query: 303 FTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMW 362 +FP ++PS+ +P +SLT+ +S SS LTL IML +VL+FLP+++ Y W+Y Sbjct: 281 LFGVAGIFPAIIPSNPNPGNSLTIMNSASSPLTLGIMLGVVLVFLPVIIGYQFWAYKTFA 340 Query: 363 GRMTTETLR 371 M E + Sbjct: 341 TPMAKEDIH 349 >UniRef50_A0PP39 Integral membrane cytochrome D ubiquinol oxidase (Subunit II) CydB n=53 Tax=Bacteria RepID=A0PP39_MYCUA Length = 538 Score = 279 bits (715), Expect = 1e-73, Method: Composition-based stats. Identities = 98/371 (26%), Positives = 180/371 (48%), Gaps = 43/371 (11%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVAR-----NDDERRIVINSVGAHWEGNQ 61 L+ +W+ +I V+ + F I +GFD G+G L+ A + RR +N++G W+GN+ Sbjct: 3 LQELWFAVIAVLFLGFFILEGFDFGVGMLMAPFAHFGTGDPEIHRRTALNTIGPVWDGNE 62 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWLI +G A+FAA+P YA FS Y+ ++ +L + R +A ++RGK+ D++WR + D Sbjct: 63 VWLITSGAAMFAAFPGWYATVFSTLYLPLLAILFGMIVRSVAIEWRGKVDDSKWRALADF 122 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 G+ GS +P +++G+AF L+ G+P S +L + LL GL + G+ + Sbjct: 123 GIAAGSWLPAILWGVAFAILVRGLPVDAN----GRLALSIGDVLNAYTLLGGLATAGLFL 178 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 G V++ LKT G I + +L V + G W + Sbjct: 179 FYGAVFVALKTAGPIRDDAYRFAVVLSLPVTVLVAGFGVWTQLA---------------- 222 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRG-RPGWGFLMASLMQFG 300 W + + V+ ++R GW FL +++ Sbjct: 223 -----------------YGKQWTWALLGVAVVAQMAAVLLVWRRVSDGWAFLCIAVVVAA 265 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 V+ L+P ++PS+++ ++T+++++S+ TL IM + +F P+ ++Y W+Y+ Sbjct: 266 VVLLLFGALYPNLVPSTLNERWNVTVYNASSTPYTLKIMTWVTALFAPLTVVYQAWTYWV 325 Query: 361 MWGRMTTETLR 371 R++ E + Sbjct: 326 FRQRISAERIP 336 >UniRef50_C2C3U7 Cytochrome bd ubiquinol oxidase subunit II n=2 Tax=Listeria RepID=C2C3U7_LISGR Length = 350 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 100/364 (27%), Positives = 181/364 (49%), Gaps = 32/364 (8%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 +L +W+LL+ V+ + F +GFD G+G +A++ +ER++++N++G W+ N+VWLI Sbjct: 15 SLNELWFLLVAVLFIGFFFLEGFDFGVGMATRFLAKSSNERKMLVNTIGPFWDANEVWLI 74 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 AGGA+FAA+P YA FSG+Y+ +++L +L R ++F++RG+ W K WD + Sbjct: 75 TAGGAIFAAFPNWYATMFSGYYLPFVVLLLALIGRGVSFEFRGQKDTKTWLKTWDWIIFF 134 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GSL+PP + G+ F L G+P + G F + F + G+ + + +L G Sbjct: 135 GSLLPPFLLGVLFSTLAKGMPID----KEMNLHGGFTDYVNIFSVWGGITIVLICLLHGL 190 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 ++ L+ G + +R+ K+ ++ L+ +V D F Sbjct: 191 QFIALRVEGELRIRATKLAKKVWFATVVALLIFVALAFVYTDLFTARP------------ 238 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 ++ + L LL+ +++GR F L + Sbjct: 239 ----------------VLVPLMIGLVVVFYLLSGFFLWKGREILTFTFGGLGIVFTVGAI 282 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 + LFP VM SS++ +LT++++ S +LS+M ++ + LP VL Y +WSYY R+ Sbjct: 283 FVGLFPRVMISSITEAYNLTIYNAASGHYSLSVMTIVAVTLLPFVLGYQIWSYYVFRKRV 342 Query: 366 TTET 369 + + Sbjct: 343 SDKE 346 >UniRef50_A7ZAA3 CydB n=16 Tax=Bacillales RepID=A7ZAA3_BACA2 Length = 338 Score = 277 bits (710), Expect = 4e-73, Method: Composition-based stats. Identities = 104/366 (28%), Positives = 179/366 (48%), Gaps = 32/366 (8%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 +L +W++L+ V+ V F +GFD G+G + N+ ERR+++N++G W+ N+VW Sbjct: 1 MGSLHDLWFILVSVLFVGFFFLEGFDFGVGISTRFLGHNELERRVLVNTIGPFWDANEVW 60 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 LI GA+FAA+P YA SG+Y+ I++L +L R +AF++RG++ + +W K WD + Sbjct: 61 LITGTGAIFAAFPNWYATMLSGYYIPFIIILLALMGRGVAFEFRGQVNNLKWVKTWDWVI 120 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 GSL+PP VFG+ F +L GVP + F ++ + +L G + L Sbjct: 121 FFGSLIPPFVFGLIFTSLFRGVPIDG----HMNIHAGFSDIVNVYSVLGGAAVTLLSFLH 176 Query: 184 GGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPL 243 G +++ L+T+G + R++ KR ++ L L D F A Sbjct: 177 GLMFITLRTIGDLQERARKMAKRVIGVIFLVVLAFFAMSAYDTDMFTRRAN--------- 227 Query: 244 MKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIF 303 + +L C +L ++ + + + GW F M + Sbjct: 228 -------------------ITIPVFVLIVICNVLAIVFMSKKKDGWAFGMTGAGLALTVA 268 Query: 304 TAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 I+LFP VM SS+ LT+ +++S +L +M ++ L LP V+ +WSYY Sbjct: 269 MIFISLFPRVMVSSLKSAYDLTVANASSGDYSLKVMTIVALTLLPFVIGSQIWSYYVFRK 328 Query: 364 RMTTET 369 R++ + Sbjct: 329 RVSHKE 334 >UniRef50_Q0BVW7 Cyanide-insensitive cytochrome bd-type quinol oxidase subunit II n=47 Tax=Proteobacteria RepID=Q0BVW7_GRABC Length = 342 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 105/365 (28%), Positives = 173/365 (47%), Gaps = 29/365 (7%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 E L +IW ++I V ++ +++ DGFD+G G L L R +++R +++NS+ W+GN+ WL Sbjct: 4 ENLPYIWGMIIAVAVLAYVLLDGFDLGCGILF-LAEREEEDRDVMVNSIAPVWDGNETWL 62 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 ++ GG L A +P YA FS FY +I +L +L FR +AF++R K R R+ WD Sbjct: 63 VMGGGGLLAVFPVAYAILFSAFYPTIIAMLLALVFRGVAFEFRFKAHTLRGRRWWDRAFC 122 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQG 184 +GSLV + G+ G +L GV Y G ++ LTPF +LCG+ + L G Sbjct: 123 LGSLVAALCQGMTLGGILQGV-----HHNGFAYTGGWFDWLTPFTVLCGVAVVVGYTLLG 177 Query: 185 GVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLM 244 WL LKT +H+R++ K +L++L W + + + L Sbjct: 178 ACWLILKTENGLHVRARHYAKPLFILLLLLIAAVSLWTPLLNETYRLRWFS--------- 228 Query: 245 KLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFT 304 + + PLL L ++ R L A M Sbjct: 229 -------------WPGIVLTAPVPLLVAAMALGFWRSLQHKRHAAPLLYAMGMFLLCYVG 275 Query: 305 AGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 GI+LFP ++P + L+L D+ + + +LV ++ +P+VL Y +SY+ G+ Sbjct: 276 LGISLFPNIVPPAHGTTP-LSLVDAAAPAASQMFLLVGAVVLIPMVLGYNAYSYWIFRGK 334 Query: 365 MTTET 369 + Sbjct: 335 VRHGE 339 >UniRef50_A0KIS6 Cytochrome D ubiquinol oxidase, subunit II n=2 Tax=Aeromonas RepID=A0KIS6_AERHH Length = 375 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 177/377 (46%), Positives = 229/377 (60%), Gaps = 2/377 (0%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 DYETL+ IWW L+ +LV F++ DGFD+G+ LLP+VA+ND+ERR+++NSVG WEGNQ Sbjct: 1 MDYETLKLIWWGLVLFMLVGFVVMDGFDLGVAMLLPVVAKNDEERRVLLNSVGPVWEGNQ 60 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWLI GALFAAWP VYAAAFS YV + +L LF RP+ FDYR K+AD WR+ WD Sbjct: 61 VWLIAGAGALFAAWPLVYAAAFSALYVPFMFLLFGLFLRPVGFDYRSKLADPVWRRWWDR 120 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 LV+G L+P +VFG G LL G+PF F LR+ Y + P L C +L +++ Sbjct: 121 ALVVGGLLPTLVFGATLGFLLQGLPFRFDAALRIHYGAFDFHW--PLLLTCMGTALALLL 178 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 L G +LQ KT G I R + L F L G WL VL D NG Sbjct: 179 LHGASFLQCKTQGEIARRCARQSLWLGPLASGLFALGGVWLSQMAGYRVLEIGDINGALT 238 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 PLMK V V W+ NFV P LW P LG P+++ +A R P L + + Sbjct: 239 PLMKEVGVAQQGWLANFVAHPWLWCVPALGLVLPMVSSLASARELPRTALLASGGACASM 298 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 + T I LFPFV+PSS+ P SSLTLWDSTSS+ TL IML IV + +PI + YTLW Y + Sbjct: 299 MLTIAIALFPFVLPSSLDPSSSLTLWDSTSSERTLFIMLGIVGVLMPINIGYTLWVYRVV 358 Query: 362 WGRMTTETLRRNENELY 378 G+M+ + +R++ + LY Sbjct: 359 RGKMSAQQIRQHGHSLY 375 >UniRef50_A5FZ08 Cytochrome d ubiquinol oxidase, subunit II n=15 Tax=Proteobacteria RepID=A5FZ08_ACICJ Length = 379 Score = 276 bits (707), Expect = 7e-73, Method: Composition-based stats. Identities = 156/378 (41%), Positives = 225/378 (59%), Gaps = 2/378 (0%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M Y L+ IW +L+GV+L I G DMG+G LL V R D ERR + +G HW+GN Sbjct: 1 MELYIALKVIWAVLLGVLLSGLGIMVGMDMGVGALLRFVGRTDAERRTALAVIGPHWDGN 60 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 QVW IL GGA+FAA+P +YA +FS FYV MIL+L S+ RP+AF+YR K+ RWR WD Sbjct: 61 QVWFILGGGAIFAAFPTLYATSFSTFYVVMILLLFSMIMRPVAFEYRSKVDARRWRATWD 120 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSF-WQLLTPFPLLCGLLSLGM 179 +I +P +++G AFGN+L GV F F+ + GSF W LL PF ++CG+LSL + Sbjct: 121 WAFLISGALPMIIYGAAFGNVLQGVGFHFSWDGQYYQDGSFIWYLLNPFAVMCGVLSLAL 180 Query: 180 VILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGP 239 + QGG L ++ G I R++ A LL F + G W+ + P Sbjct: 181 AVHQGGAMLMIRGEGPIAERARRYAVPAGLLAAALFAIGGVWVRFIKGFAYTAPVNPAMP 240 Query: 240 SNPL-MKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQ 298 + PL VA+ GAWM+NF + PVLW+ P +G + +A+ +P G+ + +L Sbjct: 241 ATPLGGPAVAMRAGAWMDNFHQHPVLWLLPAVGLLGMVAGPLALAARKPILGWWLGALAW 300 Query: 299 FGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSY 358 G IFT G +FPF+MPS+ +P SLT+W+++ S L ML L+F+PI+L YT W++ Sbjct: 301 IGTIFTTGAAMFPFLMPSTTAPAQSLTVWNASGSAYNLGWMLAFALVFVPIILSYTAWAF 360 Query: 359 YKMWGRMTTETLRRNENE 376 M G++ TE++ N++ Sbjct: 361 RVMRGKVKTESVIANDHS 378 >UniRef50_O67371 Cytochrome oxidase d subunit II n=1 Tax=Aquifex aeolicus RepID=O67371_AQUAE Length = 366 Score = 276 bits (707), Expect = 8e-73, Method: Composition-based stats. Identities = 110/390 (28%), Positives = 185/390 (47%), Gaps = 46/390 (11%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 E L IW++L+G I+ ++ DGFD+G+G + P +A++++E+RI++NS+G W+ N+VW Sbjct: 1 MELLPVIWFVLLGFIIAMYAALDGFDLGVGIVYPFLAKDEEEKRILLNSIGPVWDANEVW 60 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 LILAGGALFAA+P YA SG Y+ +IL+L L R + DYRGK+ +K D Sbjct: 61 LILAGGALFAAFPVAYATLQSGLYLPVILILFMLILRAIGIDYRGKMPTPALKKTMDMVF 120 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFT---------------PQLRVEYLGSFWQLLTPF 168 +GSL +FG+ GN++ G+P Y G +L P+ Sbjct: 121 FLGSLGVTFLFGLTLGNVIKGLPVKLVEKELYGEVVKTHMICADQDCSYTGLLINILDPY 180 Query: 169 PLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDG 228 LL LL++ V + G ++ T G + R+ K+ L +L+ + Sbjct: 181 ALLVALLTVSFVAMHGAIYAAYVTNGDLSHRAASLAKKLWFNSALLYLIVHILTMIYHPL 240 Query: 229 FVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPG 288 + N+ ++ + + ++A+ R + Sbjct: 241 LI-------------------------KNYFTRMFIFPALPIVIVAFITIIVALNRQKYS 275 Query: 289 WGFLMASLMQFGVIFTAGITLFPFVMPSSVS------PISSLTLWDSTSSQLTLSIMLVI 342 F ++ M F I A +++P ++PS P+ S+T+++S SS+ TL ML+I Sbjct: 276 LAFWSSTAMIFSAIGIAFASIYPTLVPSIYDENPFENPVHSITVFNSASSEKTLLTMLII 335 Query: 343 VLIFLPIVLLYTLWSYYKMWGRMTTETLRR 372 LI +P+VL Y + Y WG++ Sbjct: 336 ALIGVPMVLTYKFFVYRIFWGKVKVPKEGG 365 >UniRef50_B0TEW5 Cytochrome bd ubiquinol oxidase, subunit ii n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TEW5_HELMI Length = 345 Score = 276 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 124/355 (34%), Positives = 210/355 (59%), Gaps = 30/355 (8%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L+ W++L+GV+L+ + + DGFD+G+G L L+ ++ DERR +I S+G +W+ NQVWL+ Sbjct: 4 LQITWFVLVGVLLLGYALLDGFDLGVGSLY-LLTKDPDERRRMIYSIGPYWDSNQVWLLT 62 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GGA+FAA+P VYA FSGFY+A++LVL +L FR ++ +++ ++ WRK WD G +G Sbjct: 63 GGGAIFAAFPMVYATVFSGFYLALMLVLFALIFRAVSIEFQHQLDSPGWRKWWDLGFSLG 122 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 SL+P +++G+A GN+L G+P YLG F LL P+ L+ GL+SL + + G Sbjct: 123 SLLPSILYGVAVGNILRGIPLDAN----GGYLGDFLGLLNPYSLVMGLVSLSLFAMHGAA 178 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 ++ ++ G + ++++ + A L ++ FL+ W ++G Sbjct: 179 FIISQSDGALQVKARRWARAAWLTLLPLFLIGTAWSYLGTP------------------- 219 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 +N+ + P+LW+FPL+ A+ G ++L FG++ T Sbjct: 220 ------RLFSNYFDVPLLWVFPLIALLGLAAFPAALKGGNAYGPLGASALTIFGLLTTMA 273 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 +LFP+++P+S + +SLT+++++SS+ TL IML++ LI LPIVL YT + Y Sbjct: 274 ASLFPYIVPASNNLANSLTVFNASSSERTLMIMLILALIGLPIVLTYTAYIYRTF 328 >UniRef50_A8VUL7 Aspartate kinase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VUL7_9BACI Length = 339 Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats. Identities = 120/364 (32%), Positives = 206/364 (56%), Gaps = 31/364 (8%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L+ IW++L+ V+++ + + DGFD+GIG L + + ++E+R +INS+G W+GN+VWL+ Sbjct: 3 LQLIWFILLAVLIIGYAVLDGFDLGIGTLFYQLGKTEEEKRTLINSIGPVWDGNEVWLLT 62 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGK-IADARWRKMWDAGLVI 125 GGALFAA+P VYA FSGFY+AM++VL L FR +A +Y K D +++ +I Sbjct: 63 GGGALFAAFPFVYATVFSGFYLAMMVVLFGLIFRAVAVEYYFKCSDDPPMQRLMGKLFMI 122 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GSL+P ++FG+A GNL++G+P + Y +F+ LL P+ LL G++ L +LQG Sbjct: 123 GSLLPALLFGVAMGNLVIGIPMDQN----MNYTATFFHLLHPYALLIGVIGLVGFLLQGT 178 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 + LKT + R+ +K +++ + ++L + Sbjct: 179 TYTILKTENALQRRAIKFSKLFVMVLGVLWILGTVATVIFAPHM---------------- 222 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 NF P+L++FPLL +L +Y+ + FL +S++ + T Sbjct: 223 ---------FTNFTNQPLLFVFPLLTVVAIVLIPFFMYQKKYMAVFLSSSVIITSKLLTL 273 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 LFP ++ + P +SLT+++++SS+ TL++ML+I LI +P+V+ YT + Y+ G+ Sbjct: 274 AGGLFPNLV-TGADPATSLTIYNASSSEYTLTVMLIIALIGMPVVIGYTAFIYWHFRGKA 332 Query: 366 TTET 369 + E Sbjct: 333 SHER 336 >UniRef50_D1R937 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R937_9CHLA Length = 342 Score = 274 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 102/369 (27%), Positives = 185/369 (50%), Gaps = 30/369 (8%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M + +L FIW+ ++ + I DGFD+G+G L +++ ERR+++NS+G W+GN Sbjct: 1 MINASSLEFIWFSAFVALVTGYAILDGFDLGVGMLHLFSKKDE-ERRLMLNSIGPVWDGN 59 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 +VWL+ AGGALFA +P +YA S FYV ++++L L FR +A ++R K WR MWD Sbjct: 60 EVWLVTAGGALFAGFPDIYATLCSAFYVPLMILLGGLIFRAVAIEFRSKRPMPWWRWMWD 119 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 + SL+ + G+ GNL+ G+P E+ G LL P+ LL G++++ + Sbjct: 120 VLFSLASLIIALALGVVLGNLIRGLPLDAQK----EFTGDLSSLLHPYALLIGIMAVALF 175 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 + GG+++ +KT G +H + + + ++ + L + + + Q Sbjct: 176 CMHGGIFILMKTEGELHDKIRSWINPFIIFFIITYSLVTMATLIYMPHMIKTIQ------ 229 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 E P+ ++ + I +G+ F+ + Sbjct: 230 -------------------ERPIFFLLAVGNMLSIANIPREINQGKDWLAFVSSCFNIVF 270 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 ++ + +P V+ + P SLT+++S SS+ TL I+++I LI +P+VL YT Y+ Sbjct: 271 LMLLYAVGTYPEVVRAINDPSLSLTIYNSASSEKTLEILIIIALIGIPLVLAYTTAIYWI 330 Query: 361 MWGRMTTET 369 G++ ++ Sbjct: 331 FHGKVKLDS 339 >UniRef50_B0U137 Alkaline phosphatase n=18 Tax=Francisella RepID=B0U137_FRAP2 Length = 398 Score = 274 bits (701), Expect = 4e-72, Method: Composition-based stats. Identities = 143/398 (35%), Positives = 223/398 (56%), Gaps = 21/398 (5%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 + L+ I WL++GV++ + + GFD G+G L V ++D E+R +IN+VG W+G+Q Sbjct: 1 MLLDVLQIISWLVVGVLIFLVAATVGFDFGVGILAKFVGKDDYEKRAIINTVGPTWDGSQ 60 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VW I AGGA+FA WP+VYA +FSG Y+A++LVL LF RP AF+YR KI + W+ WD Sbjct: 61 VWFITAGGAIFAIWPQVYATSFSGLYIAILLVLWGLFLRPPAFEYRKKIDNPTWKNFWDW 120 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEY-----------LGSFWQLLTPFPL 170 L++GS++P VV G+A GNL LG P ++ R+ Y + LLTPF L Sbjct: 121 MLLLGSVIPIVVMGVAIGNLYLGFPISYDDTARLIYGTVTDGQYQSMWVTLIHLLTPFAL 180 Query: 171 LCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFV 230 L G+ +L M ++ G + +L+T GV+ R + T A + ++ F++A W+ + Sbjct: 181 LFGIFALNMSLMHGSAYAKLRTDGVLRDRFRKITNVTATIYLVLFVVAAIWIALIPGYQY 240 Query: 231 LLAQDANGPS----NPLMKLVAVLPGAWMNNFVES--PVLWIFPLLGFFCPLLTVMAIYR 284 S +P V +W NF ++ +W P+L F LL + + Sbjct: 241 STGASCTYASEALQHPFSAGVITSDHSWYYNFTQAKTIWMWFAPILAFVGALLVIKFNNK 300 Query: 285 GRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSV-SPISSLTLWDSTSSQLTLSIMLVIV 343 + G F+ + G + T G LFPF+M S+V + SLT+++++SSQ +L +L Sbjct: 301 DKDGAAFIASMASLLGAVLTVGFALFPFIMVSNVGNFQYSLTVFNASSSQTSLIGILCAA 360 Query: 344 LIFLPIVLLYTLWSYYKMW---GRMTTETLRRNENELY 378 +I LPI+ YT + Y KMW R++ E ++ N +ELY Sbjct: 361 VIILPIIFSYTFFVYKKMWANGRRVSAEEVKANSHELY 398 >UniRef50_A7HAW4 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Bacteria RepID=A7HAW4_ANADF Length = 342 Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 109/368 (29%), Positives = 179/368 (48%), Gaps = 30/368 (8%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L+ +W+ L+GV+L + + DGFD+G+G L L R++ +RR+++NS+G W+GN+VWL+ Sbjct: 3 LQVLWFALLGVLLAGYAVLDGFDLGVGTLYLLARRDE-QRRVLLNSIGPVWDGNEVWLVT 61 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GGALFAA+PR YA FS Y +L++ +L FR +A ++R + WR WD Sbjct: 62 FGGALFAAFPRAYATTFSALYTPFMLLILALIFRAVAIEFRSRRPSRAWRTTWDVAFFAA 121 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S + P++FG A NL+ G+P + ++ LL+P+ LL G +L + L G Sbjct: 122 SALSPLLFGAAIANLMRGLPVRADGEAQIA----LLGLLSPYALLVGAFTLSLFALHGAT 177 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 WL LKT G +H + AA + +LL + V I Sbjct: 178 WLLLKTEGELHEDVRRWAWTAAGVFSTLYLLTTIFTLVAIP------------------- 218 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 N E W+ +L A+Y R G F+ ++ ++ G Sbjct: 219 ------RATANLAELRWGWVVVVLNVLAAGNVPRAVYLRRYGQAFVSSAATIVALVVLFG 272 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 + +P ++ S++ P S+T+ + +S+ TL M +I + +P VL YT Y+ G++ Sbjct: 273 LAQWPNLVTSTLDPAFSITIRNGSSTAPTLRNMAIIAAMGMPFVLGYTGLIYWVFRGKVR 332 Query: 367 TETLRRNE 374 R Sbjct: 333 EGEHRGGH 340 >UniRef50_C8WEN7 Cytochrome d ubiquinol oxidase, subunit II n=14 Tax=Proteobacteria RepID=C8WEN7_ZYMMN Length = 340 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 83/364 (22%), Positives = 162/364 (44%), Gaps = 33/364 (9%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 L +W L V ++++++ DGFD+GIG L +++ R +++N++ W+GN+ W++ Sbjct: 7 WLPVVWACLAAVGILIYVVLDGFDLGIGILFA-TQKDEKHRDVMMNTIAPVWDGNETWMV 65 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 G L A+ Y+ Y+ +I++L +L FR +AF+YR R +W A + Sbjct: 66 FGGAVLLGAFQTAYSVILPALYLPLIVMLLALIFRGVAFEYRVHAHSKEARCLWGAAFMG 125 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GS + G+ G LL G+ + GS L PF + CG+ + L G Sbjct: 126 GSTLATFCQGMVLGGLLQGI-----KTTDHHFTGSALDWLNPFSIFCGVALVIGYGLLGA 180 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 WL +T G + ++ A + L+++C + W + ++ Sbjct: 181 GWLIWRTEGELQAYARRAARCLGSLLLVCIAVVAVWTPMLRSTYL--------------- 225 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 W N+ + + +L ++ ++ G+ FL A Sbjct: 226 ------NTWTNSSSHAVAAVVLAVLAVLVSVIFFRSLKSGKDRTPFLCALGWFILSYLGL 279 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 ++ +P+++P +T+W ++S + + +LV +I LP+VL YT++ Y G++ Sbjct: 280 ALSAWPYIVPPY------ITIWQASSPVTSQTFLLVGTVILLPLVLAYTIYCYKIFHGKV 333 Query: 366 TTET 369 T+ Sbjct: 334 TSSD 337 >UniRef50_C1DWD8 Cytochrome D ubiquinol oxidase, subunit II n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DWD8_SULAA Length = 344 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 122/368 (33%), Positives = 195/368 (52%), Gaps = 30/368 (8%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M TL IW+LL GV LV + ++DGFD+G G L ++++ RRI+ N++ W+GN Sbjct: 3 MEMLTTLEGIWFLLAGVFLVGYALTDGFDLGTGILTIFTKKDEN-RRILYNAIAPVWDGN 61 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 +VWLI GG LFAA+P VYAA+FSGFY+A++LVL +L R +AF+YR K WR WD Sbjct: 62 EVWLIAGGGMLFAAFPVVYAASFSGFYLAILLVLWALIGRAVAFEYRNKKETPLWRNTWD 121 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 IG+ VP ++FG+A GN ++GVP Y G F+ LL P PLL G ++ M Sbjct: 122 WIYWIGNFVPALLFGVAVGNAVIGVPID----QEGIYRGDFFTLLRPIPLLMGFVAAFMF 177 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 ++ G +L KT G + ++ A ++ + + + + Sbjct: 178 LMHGSAYLLRKTEGEVFELAKKAAYIGFFGYVITLAITDFLMVIVAPFL----------- 226 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 +N+ + P+ WI P +L + ++L G Sbjct: 227 --------------YDNYFKYPLFWIAPAFIIIGLILYFKNLVSNNYDKVIYGSTLTTVG 272 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 + T + +P +M SS++P +LT+W+S SS +TL++MLV+ ++ +PIV+ YT + Y Sbjct: 273 TVLTIALASYPVLMRSSLNPEYNLTIWNSASSHITLTVMLVVTILIMPIVIFYTTYVYRV 332 Query: 361 MWGRMTTE 368 G++++E Sbjct: 333 FKGKVSSE 340 >UniRef50_Q816N2 Cytochrome d ubiquinol oxidase subunit II n=73 Tax=Bacillus RepID=Q816N2_BACCR Length = 345 Score = 270 bits (690), Expect = 6e-71, Method: Composition-based stats. Identities = 105/374 (28%), Positives = 172/374 (45%), Gaps = 31/374 (8%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 + ++ L IW+ L GVI V+ I DG+ +G G + P V ++ ER + ++G W GN Sbjct: 3 LMSHDMLAIIWFGLWGVIWTVYFILDGYALGNGMIFPFVTKDRQERNQLQEAIGPFWGGN 62 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 +VWLI AGGA FAA+P YA FS Y + LVL +LF R ++ K W+K Sbjct: 63 EVWLITAGGATFAAFPVTYANMFSYLYTPLFLVLLALFARAAGLEFMHKDDSPIWQKTCK 122 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 IGS + +FG+ F NL G+ Y G+ LL + +L GL + Sbjct: 123 WAFAIGSFLIAFLFGVTFANLYYGLQIGKNG-----YEGNLLSLLNHYGILGGLFFTAIF 177 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 ++ G +W+ +KT G + R+ + ++ + + Sbjct: 178 VVSGALWVMIKTTGEVSDRAYKIARPFSMAAAIILAIFYVATA----------------- 220 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 NF E PVL+I P+L +L ++ +Y+ + G F L Sbjct: 221 ---------NRTNLFQNFTEYPVLFILPVLAMLMSVLALIMVYKHKIGLAFTFVCLTIAM 271 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 + T +FP ++PS ++ S TL+++ SQL L IM + ++ +PIV+ Y LWSY Sbjct: 272 FMTTGFAGMFPRMLPSRINDAYSTTLYNAAGSQLNLKIMFFVAMVMVPIVIGYQLWSYSI 331 Query: 361 MWGRMTTETLRRNE 374 ++ ++ + Sbjct: 332 FKNKIHKDSAKGYH 345 >UniRef50_C0W2T5 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Actinomyces RepID=C0W2T5_9ACTO Length = 378 Score = 270 bits (690), Expect = 7e-71, Method: Composition-based stats. Identities = 111/394 (28%), Positives = 187/394 (47%), Gaps = 51/394 (12%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 L +W++LI V+ + ++ +GFD G+G LL ++ RN+ ERR ++ ++G HW+GN+VW Sbjct: 1 MTLLSILWFILIAVLWIGYLTLEGFDFGVGMLLKILGRNEQERRAMMKTIGPHWDGNEVW 60 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L+ AGGA FAA+P Y FSG Y+ + L+L L R A ++R KI +WR WD Sbjct: 61 LLTAGGATFAAFPEWYGTLFSGAYLVLFLILLCLIVRICAIEWRSKINSQKWRDNWDWAH 120 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVE-------------------YLGSFWQL 164 + + +P +++G AF NL+ G+ G F+ L Sbjct: 121 TVSTWLPSILWGAAFANLVQGMKIEVVEVATGNVIPAENVPSETLLAGASHELTGGFFSL 180 Query: 165 LTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWV 224 LTPF +L GL++ + + G ++ LKT G + R++ +++A+ + W + Sbjct: 181 LTPFTILGGLVTCSLFLTHGALYTALKTAGDLSARAEAFARKSAIASTALTAVWALWAQL 240 Query: 225 GIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYR 284 + + + WI L+ + +++ + Sbjct: 241 A--------------------------------YSLNALAWIPLLVAAVFLIASLLMTWA 268 Query: 285 GRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVL 344 GR GW F + + + P VM SS+ SLT+ + S +TL+IM V + Sbjct: 269 GRQGWAFSLHFGGIAFAVVFIFSAMAPNVMRSSIDDSYSLTIAQAASDDVTLAIMTVAAI 328 Query: 345 IFLPIVLLYTLWSYYKMWGRMTTETLRRNENELY 378 IF+P+VL YT+W Y R++ E + NE L+ Sbjct: 329 IFVPVVLFYTIWGYKVFSKRVSAEKIDPNEGGLH 362 >UniRef50_C9KPM5 Cytochrome D ubiquinol oxidase, subunit II n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPM5_9FIRM Length = 338 Score = 266 bits (681), Expect = 9e-70, Method: Composition-based stats. Identities = 116/368 (31%), Positives = 191/368 (51%), Gaps = 35/368 (9%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L +W++LI V+ F +GFD G+G LLP ++ +++ER ++ ++ W+GN+VW+I Sbjct: 4 LTILWFILITVLFTGFFFLEGFDYGVGGLLPFLSSDEEERGEILRTITPVWDGNEVWMIT 63 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGGALFAA+P VYA FS FY+A+ L+L +L R +AFD RG+ W++ WD + G Sbjct: 64 AGGALFAAFPHVYATMFSAFYLALFLMLVALILRGVAFDLRGRQESRCWKRFWDGAICFG 123 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S+VP ++G+A NL+ G+P ++ Y+G F+ LLTP+ ++ GL L + + G Sbjct: 124 SVVPAFLWGVAVTNLIAGLPIN----EKMIYMGGFFDLLTPYTIVGGLAFLFVFLFHGTA 179 Query: 187 WLQLK-TVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 +L L+ + LR Q + + ++ F+L D Sbjct: 180 FLTLRLAKTSLILRCQEVALKTGAIAVIFFVLCMAMTLTYTD------------------ 221 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 PV + + ++ ++++ G+ FL++S Sbjct: 222 ------------LFTKPVAAVALVGAALFFVMAMLSMKLGKGKASFLLSSAAIVATTVAF 269 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 LFP +M SS++P SLT+ +++SS TLS+M V IF+PIVL+Y WSYY R+ Sbjct: 270 FAGLFPRLMVSSLNPAWSLTITNASSSPYTLSVMTVAAGIFVPIVLIYQSWSYYIFRKRV 329 Query: 366 TTETLRRN 373 T + + Sbjct: 330 TAKDAEEH 337 >UniRef50_C7RCZ4 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RCZ4_KANKD Length = 338 Score = 266 bits (680), Expect = 9e-70, Method: Composition-based stats. Identities = 103/362 (28%), Positives = 166/362 (45%), Gaps = 36/362 (9%) Query: 8 RFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILA 67 IW LI ++ ++I DGFD+GIG L P + +N ++ +NSV W+GN+ WL+L Sbjct: 10 AMIWAGLIAFAVLAYIILDGFDLGIGILFPFI-KNKTDQETAMNSVAPIWDGNETWLVLG 68 Query: 68 GGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGS 127 GG LFA +P Y+ Y+ +IL+L L FR +AF++ + ++ + WD G +GS Sbjct: 69 GGGLFAVFPLAYSVIMPALYMPIILMLLGLIFRGVAFEFHWRTKNS--QDWWDRGFFLGS 126 Query: 128 LVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVW 187 LV + GIA G L+ G+ Y G +W LTPF + G+ +L G W Sbjct: 127 LVATLCQGIALGALVQGITV-----ADRAYAGGWWDWLTPFSITTGIALAMGYVLLGATW 181 Query: 188 LQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLV 247 L +KT G + +S K AA L +L + W+ ++ DA Sbjct: 182 LNMKTTGELQKQSVQFAKIAAWLTLLFIGIISLWMVFIEQQYLHRWFDA----------- 230 Query: 248 AVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGI 307 L I PL FC + + +GR F+ A + I Sbjct: 231 -----------PNLYYLIIVPLAVLFCGFQLLNGLRKGRETSPFMYAIGLFVLSYIGILI 279 Query: 308 TLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTT 367 + +P ++P S+T+W + + +L +LV LPI++ YT ++Y+ G++ Sbjct: 280 SFYPNLVPP------SITIWQAAAPDDSLKFLLVGAAALLPIIIGYTAYAYWVFRGKVKA 333 Query: 368 ET 369 Sbjct: 334 NE 335 >UniRef50_B0VC09 Ubiquinol oxidase subunit II, cyanide insensitive n=183 Tax=Proteobacteria RepID=B0VC09_ACIBY Length = 351 Score = 266 bits (680), Expect = 9e-70, Method: Composition-based stats. Identities = 86/367 (23%), Positives = 160/367 (43%), Gaps = 36/367 (9%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 L IW +IG+ ++++++ DGFD+GIG + P + +N ER +++N+V W+GN+ W Sbjct: 18 MIDLSLIWVGIIGLGVLIYVVMDGFDLGIGIMFPFI-KNSQERDVMMNTVAPVWDGNETW 76 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 ++L G L+AA+P VY+ S Y+ +I ++ +L FR +AF++R K R + +WD Sbjct: 77 MVLGGAGLYAAFPLVYSTVLSALYLPIIFMVIALIFRGVAFEFRFKAH--RTKHLWDLAF 134 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 + GS++ + GI G + G+ + G + LT F + G+ + M Sbjct: 135 IWGSVLTSFLQGIILGAYIQGI-----KTENGIFAGGPFDWLTAFSIFTGIGVVAMYATL 189 Query: 184 GGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPL 243 G WL LKT + R + + +++ F + + Sbjct: 190 GCGWLILKTEKGLQQRMYELMPKLIIALLIIFGAVSLYTPLTHPEIADRWFS-------- 241 Query: 244 MKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIF 303 P+L L + A + + F+ + F Sbjct: 242 --------------LPNLFYFSPVPILVLLFVGLILSACKKQQDHKPFIYTLALVFLAFT 287 Query: 304 TAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 I+L+P ++P S+T+W + + + LV LI +PI++ YT+ SY+ Sbjct: 288 GFVISLWPNIIPP------SVTIWQAAAPHSSQMFALVGALILIPIIITYTIVSYWVFRD 341 Query: 364 RMTTETL 370 ++ Sbjct: 342 KVRVGDE 348 >UniRef50_Q5ZZ11 Cytochrome D ubiquinol oxidase subunit II, cyanide insensitive n=5 Tax=Legionellales RepID=Q5ZZ11_LEGPH Length = 329 Score = 264 bits (674), Expect = 5e-69, Method: Composition-based stats. Identities = 90/365 (24%), Positives = 164/365 (44%), Gaps = 36/365 (9%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 L FI+ L+G I+++++I DGFD+GIG L P + ++ ER ++NS+ W+GN+ WL+ Sbjct: 1 MLPFIFATLLGFIVLMYVILDGFDLGIGILFPFTS-SESERDKMMNSIAPVWDGNETWLV 59 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 G L+ A+P+VY Y+ ++L+L +L FR ++F++R K R + +W+ I Sbjct: 60 FGGAMLYGAFPQVYGLLLPILYMPIMLMLIALIFRGVSFEFRFKA--KRSKTLWNWSFSI 117 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 S+ + G+ G + G + + LTPF L G+ + L G Sbjct: 118 SSVAATFLQGVILGAFVQGFSINESSMTINDP-----DWLTPFSLCTGIALVCGYALLGS 172 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 W+ +K+ G + + + +LV L W + + Sbjct: 173 TWMIIKSTGRLQRKMVHYARGLLVLVSFFLLFVSIWTPLHSEEVFHRW------------ 220 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 +F +L PL+ L + G F+ + ++ Sbjct: 221 ----------YSFPNVLLLSPLPLIALMAIYLVWQNLNSGSEYKPFIYSIIIFLCSYIGI 270 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 I+++P+++P +TLW++ + TL +L+ V I LPI+L YTL++YY G+ Sbjct: 271 AISVYPYLIP------HQVTLWEAAAPDSTLVFILIGVAIMLPILLAYTLYAYYLFRGKS 324 Query: 366 TTETL 370 + Sbjct: 325 SENYH 329 >UniRef50_A5CR84 Cytochrome bd-type menaquinol oxidase subunit II n=4 Tax=Actinomycetales RepID=A5CR84_CLAM3 Length = 334 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 115/369 (31%), Positives = 187/369 (50%), Gaps = 37/369 (10%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW+ +I + V + + DGFD G+G LP +A++D +RR++IN++G W+ N+ WLI+ Sbjct: 3 LTLIWFGVIAFLFVGYFVLDGFDFGVGMSLPFLAKDDTDRRVLINTIGPVWDLNETWLIV 62 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AG ALFAA+P YA FSGFY+ ++ +L +L R ++F++R + A RWR +DA +V+G Sbjct: 63 AGAALFAAFPEWYATMFSGFYLLLLAILITLILRGVSFEFRHQGASDRWRGWFDAMIVVG 122 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S+VP ++G+ F N++ GVP +Y GS LL P+ LL GL +L + ++ G Sbjct: 123 SVVPSFLWGVVFANVVRGVPMD----RHHDYTGSTLDLLNPYALLGGLTTLSLFLVNGLQ 178 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 + LKT G I R++L + R + ++ W + Sbjct: 179 FAALKTDGPIRARARLLSMRVGAVTIVIAATFLVWTTLTH-------------------- 218 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 S + L + + +A RGR W F + + + + Sbjct: 219 -------------GSAPSGLVSALAAVALVGSYLANVRGRERWAFGLLAATIALAVASLF 265 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 L PFVMP+S LTL +++SS TL+IM LP++L Y W+Y+ R+T Sbjct: 266 TALHPFVMPASNDAAYGLTLENASSSPYTLTIMTWAAGFALPLILAYQAWTYWVFRKRIT 325 Query: 367 TETLRRNEN 375 + + + Sbjct: 326 RAVIAQAAH 334 >UniRef50_C7M6E4 Cytochrome d ubiquinol oxidase, subunit II n=7 Tax=Bacteroidetes RepID=C7M6E4_CAPOD Length = 344 Score = 261 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 101/362 (27%), Positives = 173/362 (47%), Gaps = 30/362 (8%) Query: 8 RFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILA 67 W+++IG ++ + I DGFD G G + ERR+ +N++G W+GN+ WL++ Sbjct: 10 PTWWFIIIGFLITGYAILDGFDFGAGAWHLFFDK-KKERRVALNAIGPVWDGNEAWLVIG 68 Query: 68 GGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGS 127 G +FA +P +YA FS +L L + FR +A + RGK RWR WD + S Sbjct: 69 GAGIFAGFPLMYAELFSAMNTPFMLFLTFIIFRAVAIEVRGKEDSDRWRNTWDTVYSVCS 128 Query: 128 LVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVW 187 +V PV+ G+ N+L G+P Q G+ + LTP+ LL G+++L + ++ GG++ Sbjct: 129 IVLPVLLGVVIANVLQGLPLDENFQYTG---GALFTFLTPYALLVGVMTLLLFMVHGGLY 185 Query: 188 LQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLV 247 L LKT G +H R + A L ++ F + Sbjct: 186 LLLKTHGDMHHRIEKRINYAYLGFLVVFTAVAIY-------------------------- 219 Query: 248 AVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGI 307 ++L N + L +FP L L + + F+ L + A + Sbjct: 220 SMLTPHLAENIANNTALKVFPALLLLSILSVAFFMKKKDYKKAFVGTILTIVFFMVVAAL 279 Query: 308 TLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTT 367 L P + +++ +S+T++++ +SQ +L IML I I P++LLYT ++Y WG++ Sbjct: 280 NLHPTFLRTTLETGNSITVYNAAASQKSLKIMLTITAIGAPLLLLYTYFAYKVFWGKVEI 339 Query: 368 ET 369 + Sbjct: 340 DE 341 >UniRef50_B6WVU2 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WVU2_9DELT Length = 344 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 113/373 (30%), Positives = 198/373 (53%), Gaps = 30/373 (8%) Query: 3 DYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQV 62 ETL+ IW++L ++ V+ + DGFD+G+G LLP + N++ERRI+ N+ G W+GN+V Sbjct: 1 MLETLQVIWFILWALLWAVYFVLDGFDLGLGSLLPFIGSNEEERRIMYNAAGPFWDGNEV 60 Query: 63 WLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAG 122 WLI AGG FAA+P+VYA FS Y ++++L +L FR ++F++RGK+ WR WD Sbjct: 61 WLISAGGVTFAAFPKVYAVMFSALYAPLLILLFALIFRAVSFEFRGKVESGVWRGFWDLV 120 Query: 123 LVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVIL 182 + +LVP ++ G+ F NL +G+P + G+ L+ + + + L M +L Sbjct: 121 HFLSNLVPSLLLGVTFANLFMGIPIDGE----GVFHGTLMGLVNGYGIAGAIFFLVMFML 176 Query: 183 QGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNP 242 G +WL +K+ G + R+ + ++++ + + D Sbjct: 177 HGSLWLAIKSQGELQTRAVASATLLWPVMLILLVAFLVLTFFNTD--------------- 221 Query: 243 LMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVI 302 NN+ +P+L + P++ L + RG+ ++ +++ GV Sbjct: 222 -----------LFNNYWSNPLLLLLPVVALAGLLGVRCMLRRGQLWKAWMCSAVYIIGVT 270 Query: 303 FTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMW 362 F + +FP ++ SS+ P ++LT ++++SS+LTL IML + L+ +PIVLLY W Y Sbjct: 271 FFGVMGMFPRMLISSIDPTATLTAFNASSSELTLKIMLGVALVMVPIVLLYQFWVYRLFS 330 Query: 363 GRMTTETLRRNEN 375 ++ E L+ Sbjct: 331 HSLSAEDLKDEHA 343 >UniRef50_D1RLM4 Cytochrome D ubiquinol oxidase subunit II n=1 Tax=Legionella longbeachae D-4968 RepID=D1RLM4_LEGLO Length = 331 Score = 257 bits (657), Expect = 5e-67, Method: Composition-based stats. Identities = 84/367 (22%), Positives = 160/367 (43%), Gaps = 38/367 (10%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 L I+ +L+ I+++++I DGFD+GIG L P + ++ ER ++NS+ W+GN+ WL+ Sbjct: 1 MLPLIFAVLLAFIVMMYVILDGFDLGIGILFPFTS-SEKERDKMMNSIAPVWDGNETWLV 59 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 G L+ +P+VY A Y+ ++ +L +L FR ++F++R K + + +W+ I Sbjct: 60 FGGAILYGGFPQVYGALLPVLYIPIMFMLIALIFRGVSFEFRFKAD--KSKPVWNWLFAI 117 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GS+ G+ G + G + LTPF L G+ + L G Sbjct: 118 GSIAAAFFQGVILGCFVQGFSMNPQTMAI-----TQSSWLTPFSLFTGVALVSGYGLLGA 172 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 W+ +K+ G + + + + V + W + + Sbjct: 173 TWMIIKSSGKLQAKMVHYARGLLISVSFFLVFVSIWTPLHSEEVFNRW------------ 220 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVM--AIYRGRPGWGFLMASLMQFGVIF 303 F L PL+ F LT ++ F+ + ++ Sbjct: 221 ----------YQFPNFLWLSPLPLITAFAIYLTWRNLSLNSNNERKPFIYSIIIFLCSYI 270 Query: 304 TAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 ++++P+++P +T+W++ + TL+ +LV V I LPI+L YTL++Y+ G Sbjct: 271 GIAVSVYPYLIP------HQITIWEAAAPSSTLTFILVGVAIMLPILLAYTLYAYFLFRG 324 Query: 364 RMTTETL 370 + Sbjct: 325 KTEEHYH 331 >UniRef50_Q4KA99 Cytochrome d ubiquinol oxidase, subunit II n=66 Tax=Proteobacteria RepID=Q4KA99_PSEF5 Length = 338 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 95/363 (26%), Positives = 164/363 (45%), Gaps = 35/363 (9%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW ++I +++++I DGFD+G+G L PL+ + ER +++N+V W+GN+ WLIL Sbjct: 8 LSLIWGVIIAFGVMMYVIMDGFDLGLGILFPLIP-DARERDVMMNTVAPVWDGNETWLIL 66 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 G AL+ A+P Y+ Y+ +I +L L FR +AF++R K R +WD + G Sbjct: 67 GGAALYGAFPLAYSVILEALYLPLIFMLAGLIFRGVAFEFRFKA-SPEKRHIWDWAFIGG 125 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 SL+ + GI G + G+P + ++ G L PFPL CGL + L G Sbjct: 126 SLLATLCQGIVIGTYISGIPV-----VDRQFAGGTLDWLAPFPLFCGLGLIVAYALLGST 180 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 WL +KT G++ R + T+ A + + W + Sbjct: 181 WLLVKTEGMLEARMRHYTRPLAFALTAVVAVLCVWTALLHPEIANRWFSHA--------- 231 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 + +LG + + + W F+ ++ F Sbjct: 232 -------------HIVIFGALLVLGLAALFGLLGTLRQHHSHWPFVFTLVLVFLGYIGLA 278 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 +++P ++P S++LW++ S + +L+ L LP++L+YT WSYY G++ Sbjct: 279 FSIWPNIVPP------SISLWEAASPLSSQLFILIGTLFILPVILMYTCWSYYVFRGKVR 332 Query: 367 TET 369 Sbjct: 333 IGD 335 >UniRef50_Q6MAP6 Putative cytochrome bd-I oxidase subunit II n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MAP6_PARUW Length = 310 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 97/338 (28%), Positives = 165/338 (48%), Gaps = 30/338 (8%) Query: 35 LLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVL 94 +L L A+ D ERR+++NS+G W+GN+VWL+ AGGALFA +P +YA S FYV ++ +L Sbjct: 1 MLHLFAKKDIERRVMLNSIGPVWDGNEVWLVTAGGALFAGFPDIYATMLSAFYVPVMALL 60 Query: 95 CSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLR 154 +L FR +A ++R K A WR WD +GSL+ + G+ GNL+ G+ Sbjct: 61 SALIFRAVAIEFRSKKQMAWWRWTWDIAFSLGSLMIAFILGLVMGNLIRGMQLDGYK--- 117 Query: 155 VEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLC 214 E++G LL P+ LL G +++ + ++ G +++ +KT G H R ++ + ++ Sbjct: 118 -EFIGQLEDLLQPYALLVGGMTVFLFLMHGSIYILMKTEGEFHDRMRMKAVSCIIFFIIT 176 Query: 215 FLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFC 274 + + + + + F +P +I L+ Sbjct: 177 YAITTMATLIYMPHMIEA-------------------------FRHNPFFFIIALINLLA 211 Query: 275 PLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPI-SSLTLWDSTSSQ 333 IY G+ F+ + L ++ I +P V+ S P SLT+++S SS Sbjct: 212 IANIPREIYFGKDSRAFICSCLNIICLLALYAIGTYPNVIRSIDQPDVLSLTIYNSASSV 271 Query: 334 LTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLR 371 TL I+ +I LI +P+V+ YT YY G++ + Sbjct: 272 KTLEILFLIALIGVPLVIAYTTAIYYIFRGKVKIDPHS 309 >UniRef50_A8GFS1 Cytochrome d ubiquinol oxidase, subunit II n=19 Tax=Proteobacteria RepID=A8GFS1_SERP5 Length = 335 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 103/363 (28%), Positives = 162/363 (44%), Gaps = 35/363 (9%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW+++I +++++ DGFD+GIG L P V ++ +R +++N+V W+GN+ WL+L Sbjct: 5 LPLIWFVIIVFSTMMYVVMDGFDLGIGILFPWV-KDSGDRDVMMNTVAPVWDGNETWLVL 63 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 G ALF A+P YA + + L+L L FR +AF++R K A R +WD + G Sbjct: 64 GGAALFGAFPLAYAVILDALAIPLTLMLFGLIFRGVAFEFRFKA-TAEKRHIWDKAFIWG 122 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S+ G+ G ++ G P Y G LTPF L CGL + L G Sbjct: 123 SVFATFSQGVVVGAIIKGFPVN-----GRTYAGGALDWLTPFALFCGLGLVVTYALLGCT 177 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 WL +KT G + R ++L + W + L Sbjct: 178 WLVMKTAGDLQARMYRLAMPLLATLLLVLAVVSIWTPIAHPEIANRWFSLPNLFVLLPVP 237 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 + VL AW + FL+ L+ F + G Sbjct: 238 ILVLLSAW----------------------GIGHGVKNAAHYSPFLLTLLLVFLGLSGLG 275 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 I+++P ++P S+TLW + + +L MLV L +PI+L+YT WSYY G+++ Sbjct: 276 ISIWPLLIPP------SITLWQAAAPPQSLGFMLVGALFIIPIILVYTFWSYYVFRGKVS 329 Query: 367 TET 369 E Sbjct: 330 HEQ 332 >UniRef50_A1R5L7 Cytochrome d ubiquinol oxidase, subunit II n=18 Tax=Actinobacteria (class) RepID=A1R5L7_ARTAT Length = 360 Score = 253 bits (647), Expect = 8e-66, Method: Composition-based stats. Identities = 100/374 (26%), Positives = 165/374 (44%), Gaps = 37/374 (9%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 E L IW++ I V+ ++ +GFD+G+G L+ L ARN+ +RR+++N++G W+GN+VW Sbjct: 1 MELLPTIWFVAIAVLWTGYLFLEGFDLGVGMLMKLFARNNTDRRVLLNTIGPVWDGNEVW 60 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L+ A GA FAA+P YA+ FS Y+ ++ VL +L FR +AF+YRGK+ WR WD + Sbjct: 61 LLTAAGATFAAFPLWYASLFSTLYLPLLAVLAALIFRAVAFEYRGKVDSESWRNRWDWAI 120 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 IGS V G A G+P + G + + LL G + ++ Sbjct: 121 AIGSFVAAFGIGAALALTTTGLPLDAN----GDRSGGPMSWFSGYALLGGFGVVAFALVH 176 Query: 184 GGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPL 243 +L LKT G + R++ R + +L + Sbjct: 177 ALAFLALKTDGEVRYRARRWFVRLVPVAVLPMFGWMVAVQF------------------- 217 Query: 244 MKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIF 303 P W + +L G G F Sbjct: 218 --------------LSGKPWTWALVVAAVVAVVLAWRLARTGSEGRAFSALGAFIVCATA 263 Query: 304 TAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 + FP V+PS++ P +LT+ +++SS TL +M ++ + LP+V+ Y W+Y+ Sbjct: 264 SIFGAAFPVVIPSTIDPAFNLTISNASSSDYTLGLMSIVAAVGLPLVIAYQSWTYWVFRR 323 Query: 364 RMTTETLRRNENEL 377 R++ + L Sbjct: 324 RVSAAHIPEAHGFL 337 >UniRef50_Q6ABD4 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Propionibacterium acnes RepID=Q6ABD4_PROAC Length = 357 Score = 253 bits (646), Expect = 8e-66, Method: Composition-based stats. Identities = 108/373 (28%), Positives = 178/373 (47%), Gaps = 34/373 (9%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 + L +W++LI V+ V F +GFD G+ LLP + R+D +RR+++N++G W+GN+VW Sbjct: 10 HSPLTIVWFVLITVLWVGFFFLEGFDFGVAMLLPFLGRDDKDRRLMVNTIGPTWDGNEVW 69 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L+ AGGA FAA+P YA FSG Y+ ++LVL L R +AF+YR K + WR +D Sbjct: 70 LLTAGGATFAAFPGWYATMFSGLYLPLLLVLLGLIVRGVAFEYRSKNPSSSWRNAFDWMA 129 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFA----FTPQLRVEYLGSFWQLLTPFPLLCGLLSLGM 179 IGS +P +V G+ F N + G+ SFW L TPF L+ G+L + + Sbjct: 130 TIGSFLPTLVLGVGFANFVRGLAVGPHSTPDGGTAPLVTTSFWGLFTPFALIGGILFVVL 189 Query: 180 VILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGP 239 G ++ LKT+G +H R++ + + + + L+ Sbjct: 190 FCAHGANFVALKTMGDMHDRARKTSAKLGWIATVVALVWAL------------------- 230 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299 + ++ + WI LL + +GR G FL +L Sbjct: 231 ---------MFNIMYVTRDGRQVLTWIICLLVVVLLAAGSAVVAKGREGLAFLCTALGIA 281 Query: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359 +I ++ + + +W ++++ TL IM + +F+PIVL Y +WSY+ Sbjct: 282 LMIVACMFAMYGNL--GYRPSGIAFDMWIASATGRTLKIMTISACVFVPIVLAYQVWSYW 339 Query: 360 KMWGRMTTETLRR 372 R+T E + Sbjct: 340 VFRKRLTREAIPD 352 >UniRef50_Q1ILJ8 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Acidobacteria RepID=Q1ILJ8_ACIBL Length = 349 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 95/373 (25%), Positives = 180/373 (48%), Gaps = 30/373 (8%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 + +W+ ++ V++ +++ DGFD+G G L VAR D+ERR++I S+G W+GN+VWL+ Sbjct: 1 MPTLWFCIVAVMVAAYVVLDGFDLGAGVLHLFVARTDEERRLIIRSIGPVWDGNEVWLLS 60 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGG L+ A+P++YA+ FSGFY+ +++VL L R + ++R I W+ +D + Sbjct: 61 AGGTLYFAFPQLYASGFSGFYLPLMMVLWLLMGRAIGIEFRTHIQSDVWKGFFDVVFSLS 120 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFT-----PQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 SL+ + FG A GN++ GVP P +G +L + +LCG+++ + Sbjct: 121 SLLLTIFFGAALGNVIRGVPLGEDRYFFEPLWTNWRVGPHPGILDWYTVLCGVIAAVTLT 180 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 G ++ KT G ++ R + + +L +++ Sbjct: 181 AHGAFYVASKTEGDLNQRCRKTAAVLWPVQVLLTIVSLIAT------------------- 221 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 + + N+ PV W+ P+L + +G F+ ++L + Sbjct: 222 ------TSIRPEVLANYKRWPVGWLIPILVVATLGGMFVFRKKGNDKAAFVSSALYITVM 275 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 + A L+P V+P+S +P SLT+ ++++ L+I LV I + + Y ++ Y Sbjct: 276 LVGAVFALYPTVLPASTNPDWSLTIQNASAPTYGLTIGLVWWSIGMVFTVGYFVFVYRMF 335 Query: 362 WGRMTTETLRRNE 374 G+++ + Sbjct: 336 RGKVSLSDGSDHG 348 >UniRef50_B4U7P7 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Aquificales RepID=B4U7P7_HYDS0 Length = 346 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 120/364 (32%), Positives = 197/364 (54%), Gaps = 30/364 (8%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 TL+ +W+L+ GV L+ + I+DGFD+G + + + + +R + NSV W+GN+VWLI Sbjct: 10 TLQGLWFLIAGVFLIGYSITDGFDLGSAFPMIFM-KKEYDRIALYNSVAPVWDGNEVWLI 68 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 GG LFAA+P VYAA+FSGFY+A++LVL +L R +AF+YR K WR +D + Sbjct: 69 AGGGLLFAAFPTVYAASFSGFYLAILLVLWALIGRAVAFEYRNKRESMAWRHTFDFIYWL 128 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 G+++P ++FG+A GN ++GVP Y G+F+ LL P PL GL+S M + G Sbjct: 129 GNVLPAILFGVAVGNAVVGVPIDQDA----VYHGTFFTLLRPVPLAMGLVSFFMFAMHGA 184 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 +L LKT G + ++ + + ++ +L Sbjct: 185 AYLLLKTEGSVFEMAKKYASISVIGYVISVILT-------------------------NA 219 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 L N+ P+L+ PL+ F +L V + G+ + L+ + Sbjct: 220 LAMQEAPFLYKNYFTYPILFAIPLMMFVGVVLYVSLLKSGKYEKMVYASGLVNAFTVLNV 279 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 FP +M SS++P SLT+++++SS LTL++ML++ +IF+PIV+ YT ++Y G++ Sbjct: 280 ACASFPVLMRSSINPDYSLTVFNASSSTLTLTVMLIVTVIFMPIVIYYTRYAYKVFSGKV 339 Query: 366 TTET 369 + E Sbjct: 340 SGEK 343 >UniRef50_D1BV47 Cytochrome d ubiquinol oxidase, subunit II n=7 Tax=Actinomycetales RepID=D1BV47_XYLCX Length = 362 Score = 250 bits (638), Expect = 8e-65, Method: Composition-based stats. Identities = 125/372 (33%), Positives = 194/372 (52%), Gaps = 43/372 (11%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVAR-----NDDERRIVINSVGAHWEGNQ 61 L +W++LI V+ +++ +GFD G+G LL + R DERR++IN++G W+GN+ Sbjct: 3 LSILWFVLIAVLWTGYLVLEGFDFGVGMLLSIFPRGTAKQKHDERRVLINTIGPVWDGNE 62 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWL+ AGGA FAA+P YA FSGFY+ ++L+L +L R +AF+YRGKIA A W + +D Sbjct: 63 VWLLTAGGATFAAFPEWYATLFSGFYIPLLLILVALIVRVVAFEYRGKIASAVWARRFDV 122 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 L IGS VP V++G+AF NL+ GV +Y+G FW LL PF LL GL +L + + Sbjct: 123 LLQIGSWVPAVLWGVAFANLVRGVQLDVD----HQYVGGFWALLNPFALLGGLTTLVLFL 178 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 L G V+L LKT G + LR++ R +L ++ W V Sbjct: 179 LHGSVFLALKTDGELRLRARTFAARLSLAAVVIAGGWAVWAQVA---------------- 222 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 W + C + V+ RGR W F ++++ Sbjct: 223 -----------------FSVTWTWAAVAVAALCLVGVVVTNARGRESWAFTLSAVAIVAA 265 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 + +++P VMP + SL++ ++S+ TL++M + +I P+V+ Y W+Y+ Sbjct: 266 VVLIFGSMYPDVMPG-LDGGPSLSIAAASSTPYTLTVMTWVAVILTPVVIAYQSWTYWVF 324 Query: 362 WGRMTTETLRRN 373 R+TT L Sbjct: 325 RRRLTTSDLPAP 336 >UniRef50_Q2IFY9 Cytochrome d ubiquinol oxidase, subunit II n=5 Tax=Bacteria RepID=Q2IFY9_ANADE Length = 349 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 123/371 (33%), Positives = 195/371 (52%), Gaps = 30/371 (8%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW++L+GV++ + + DGFD+G+G L AR+++ER++ + ++G W+GN+VWL+ Sbjct: 3 LNVIWFVLVGVLIAGYAVLDGFDLGVGVLSLF-ARDEEERQVHVKAIGPVWDGNEVWLLT 61 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GGALFAA+P VYA FSGFY+A++L+L +L R +A ++R ++ A WR+ +D +G Sbjct: 62 GGGALFAAFPVVYATVFSGFYLALMLLLLALIARAVALEFRSQLDGAAWRRGFDLAFGVG 121 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 SL+P V+ G+A GN+L GVP E+ GSF LL P+P+L GL+SL M L G + Sbjct: 122 SLLPAVLLGVAVGNVLRGVPVTAAQ----EWAGSFLGLLHPYPVLVGLVSLSMFTLHGAL 177 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 WL+LK G + R R Sbjct: 178 WLRLKAEGALEARMARWVPRL-------------------------WGAFAATYAIATAA 212 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 V + +P+ LL + RG G FL +SL +I A Sbjct: 213 SLVEAPHLFAGALANPLFLALTLLVVASIGAIPVLSRRGAAGKAFLASSLAIVSMILVAA 272 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 +++FP ++PSS+ P LT+++++SS TL++MLVI L+ +P+V+ YT Y G++ Sbjct: 273 VSMFPRLVPSSIDPAYDLTVYNASSSPRTLAVMLVIALVGMPLVIAYTALVYRVFRGKVR 332 Query: 367 TETLRRNENEL 377 + + Sbjct: 333 PGAGGHYGDAV 343 >UniRef50_C7MDJ2 Cytochrome d oxidase cyd, subunit II n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MDJ2_BRAFD Length = 357 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 108/378 (28%), Positives = 174/378 (46%), Gaps = 37/378 (9%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGC-LLPLVARNDDERRIVINSVGAHWEG 59 M D L +W+ LI + + + +GFD G+ + R R V+ ++G W+G Sbjct: 1 MLDPTVLETLWFFLIAFFFLGYFVLEGFDFGVQMNVATFWRRGTGTRGTVLRTIGPVWDG 60 Query: 60 NQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMW 119 N+VW+I G LFAA+P YA FSGFY+A++L+L L R AF +R K+ RWR W Sbjct: 61 NEVWVITGGALLFAAFPEWYATLFSGFYLALLLLLVVLIVRVCAFKWREKVDSERWRNGW 120 Query: 120 DAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGM 179 D VIG P +++G+AF N++ GV + + +LL PF LL GL+ + + Sbjct: 121 DVVHVIGGFAPALLWGVAFSNIVAGVSIDENRWV----TTTLLELLNPFALLGGLVFVLL 176 Query: 180 VILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGP 239 L G ++L LK G + + A ++ W + L Sbjct: 177 FWLHGTLYLALKVEGRLREDANRLAGILAWPALVAGAAFLLWYQLAHSHSALTLIPLAVA 236 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299 + L+ +V +GR G F + Sbjct: 237 ALGLLAVVP--------------------------------LNRQGREGLAFGATTAAIT 264 Query: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359 G + T LFP+V+P++ +SLT+ +++S+ TL++MLV + +F+P+VL YT+W+Y Sbjct: 265 GAVITLFGGLFPYVLPATNDAANSLTVANASSTGHTLTVMLVALCVFMPVVLAYTVWTYR 324 Query: 360 KMWGRMTTETLRRNENEL 377 R++ E EL Sbjct: 325 VFRHRVSDEDSPAPGAEL 342 >UniRef50_A0LSG2 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSG2_ACIC1 Length = 348 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 107/364 (29%), Positives = 170/364 (46%), Gaps = 29/364 (7%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 + L W+ LIG++ ++ +GFD G+ + PLV++++ +RR+ +NSVG W+GN+ Sbjct: 1 MSFGVLDTTWFSLIGLLWAGYLFLEGFDFGVALITPLVSKDEIDRRMCLNSVGPFWDGNE 60 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWLI+AGGA FAA+P YA FSGFY+A+ L+L +L R ++F++R K WR+ WD Sbjct: 61 VWLIVAGGATFAAFPLWYARLFSGFYLALFLILLALIARGVSFEFRNKDHRPAWRRTWDW 120 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 +GSL+PP V+G+AF NL++G+P Y G LL P +L G ++ +V Sbjct: 121 ANFLGSLIPPAVWGVAFTNLVVGLPLD----SGGVYRGGLAGLLHPIAVLGGAATVALVS 176 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 G +L LKT + R++ + L + + Sbjct: 177 FHGANFLLLKTSSGLAHRTRSVAVPLGVAATLLTGAVVLAVAL----------------- 219 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 G + + V + G + R R G F Sbjct: 220 --------TRGKALPEALPGVVPLAMAVAGVAGVAAGTFLVARARDGAAFAATGGSLLLT 271 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 + +FP V P P S+T+ + S TL +M ++ IF P+VL Y W+Y+ Sbjct: 272 MGAVFARMFPTVFPDFHHPAHSVTIAAAASGHYTLVVMTIVAAIFTPLVLAYQGWTYWVF 331 Query: 362 WGRM 365 R+ Sbjct: 332 RRRL 335 >UniRef50_B1MXQ3 Cytochrome d ubiquinol oxidase, subunit II n=30 Tax=Lactobacillales RepID=B1MXQ3_LEUCK Length = 337 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 95/369 (25%), Positives = 176/369 (47%), Gaps = 32/369 (8%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 L IW++LIGV+ F +GFD GIG L AR+ +R + ++G +W+ N+VW Sbjct: 1 MTILEIIWFVLIGVLWAGFFFLEGFDFGIGMQFALNARDQKDREALYQAIGPNWDANEVW 60 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L+ AGGA FAA+P YA+ FSGFY+ + +VL SL +R ++F++R + + ++W+ + Sbjct: 61 LVTAGGATFAAFPAWYASLFSGFYLMLFIVLLSLIYRGVSFEFREHMPTVQGTQLWERLI 120 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 + S + P G+ F ++ G+P R F+ +TPF L+ G+ M + Sbjct: 121 ALTSFLVPFFLGMIFTAMVSGMPIDA----RGNLSAGFFDYVTPFSLVGGVAVSLMSYVH 176 Query: 184 GGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPL 243 G + +L+ G + R+ + +++ L L+ D Sbjct: 177 GLNYTRLRIDGKLRTRALKQLEYLYPILLAGEALFAVLLFFYTDFIQT------------ 224 Query: 244 MKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIF 303 L I ++ + ++AI + F+++ L V+ Sbjct: 225 ---------------QTVWTLSILVVIVLTTVIGWLLAIKQKMEKLPFVLSGLTLVEVVV 269 Query: 304 TAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 + LFP VM ++ +P+ +L + +++SS TL +M ++V+ LP+ L Y +WS++ Sbjct: 270 LLFVGLFPRVMVAN-NPLHTLNIMNTSSSTYTLKVMTIVVVTALPVTLGYQIWSFWVFRK 328 Query: 364 RMTTETLRR 372 R+ + + Sbjct: 329 RIVSHKVVE 337 >UniRef50_Q1J2Z7 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Bacteria RepID=Q1J2Z7_DEIGD Length = 365 Score = 247 bits (630), Expect = 6e-64, Method: Composition-based stats. Identities = 104/367 (28%), Positives = 167/367 (45%), Gaps = 34/367 (9%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L +W+ L G+I V+ DGFD G+G L P +ARN+ +RR +I +VG W N+VW+IL Sbjct: 3 LPTLWFALTGLIFTVYFFLDGFDFGVGVLQPFLARNEAQRRALIGTVGPFWAANEVWVIL 62 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 A G +FAA+P Y A +G Y L+L +L R +AF+YR ++ RWR WD I Sbjct: 63 AAGVIFAAFPVWYGALMTGLYPLFALILLALIGRGVAFEYRAEVDHVRWRVFWDVTSFIT 122 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 +L+P ++G+ N++ G+P + GS F +L GL +L + +L G Sbjct: 123 NLLPAFLWGVIMANMVRGLPIG----EGARFQGSPLDAFDLFSVLGGLSTLSLFVLHGAT 178 Query: 187 WLQLK--TVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLM 244 +L L+ T +H R++ A + L Y ++ F L Sbjct: 179 YLLLRLQTGSTLHARARRAALTWGAVATALVLAFVYVGFIHTGLFATLGLSE-------- 230 Query: 245 KLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFT 304 W+FP L +A+ R F L T Sbjct: 231 --------------------WLFPAGAAVNLALIWLALTLRRDRLAFAATGLTIVFSTAT 270 Query: 305 AGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 ++L+P +PS++ +LT+ + S TL ++ + L FLP+++ Y W+YY R Sbjct: 271 IFLSLYPAALPSTLGEGYTLTVQAAASEPYTLRLLSWVSLAFLPLIIGYQAWNYYVFRQR 330 Query: 365 MTTETLR 371 + + Sbjct: 331 VQERDEQ 337 >UniRef50_C2KAY6 Cytochrome d ubiquinol oxidase, subunit II n=5 Tax=Lactobacillales RepID=C2KAY6_9LACO Length = 338 Score = 246 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 100/369 (27%), Positives = 175/369 (47%), Gaps = 33/369 (8%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 L+ +W++LIGV+ F DGFD G+G + +A N+ ER V+ ++G W+GN+VW Sbjct: 1 MSFLQILWFILIGVLFSGFFFLDGFDFGVGMAVKTLAHNEPERDQVVRTIGPVWDGNEVW 60 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 LI AGGA+FA++P YA FSG+Y+ ++L+L L R ++F++R K A + +WD + Sbjct: 61 LITAGGAMFASFPYWYATLFSGYYLILLLILVGLIIRGVSFEFRAKCA-PYQKHIWDNAM 119 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 IGS++ +FG+ F +++ G+P + SF+ F ++ G+ + L Sbjct: 120 AIGSVIATFLFGVMFISMIKGMPIDA----KGNISASFFDYFNWFSIVGGIALTLLCYLH 175 Query: 184 GGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPL 243 G ++ +KT GVI R+Q + ++ + ++ L D + Sbjct: 176 GLNYITIKTKGVISDRAQNYAQALYWVLYVGEVVFALLLIFQTDFMRV------------ 223 Query: 244 MKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIF 303 I +L + +A + + G + L ++ Sbjct: 224 ----------------HPIATLICLVLIVGFSVAAHVATFINKQGMALACSGLTLISLVA 267 Query: 304 TAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 LFP VM SS+S L + ++SS TL +M V I +P +L YT+W+Y+ Sbjct: 268 LIFCGLFPRVMISSISSKYDLLIHSASSSNYTLIVMTVATCILVPCILAYTIWAYWIFRK 327 Query: 364 RMTTETLRR 372 R++ + Sbjct: 328 RISMPRIGE 336 >UniRef50_A6W2X5 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Marinomonas RepID=A6W2X5_MARMS Length = 337 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 91/366 (24%), Positives = 154/366 (42%), Gaps = 44/366 (12%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L ++L++G + ++++ DGFD+GIG L P ++ ER ++ S+ W+GN+ WL+ Sbjct: 4 LALFYFLVLGFAIFMYVLLDGFDLGIGILYPWFNQD-GERDHLMRSISHVWDGNETWLVF 62 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 G LFAA+P YA S FY+ ++L+L +L FR +AF+YR K + R WD G Sbjct: 63 GGVVLFAAFPAAYAGITSTFYLPIMLMLFALIFRGVAFEYRFKSDTS--RPYWDFAFSAG 120 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S + G+ G+++ GVP S LTPF +L G + L Sbjct: 121 SAIAAFCQGMLLGSIVQGVPVGVDSL-------SSLHWLTPFSILTGFAVMAGYALLAAC 173 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 +L +K+ G I + K+ L+ +L ++ W Sbjct: 174 YLFMKSRGRIQKHAAKLGKQLLLITILAMVIVSVWTIASQVEIRQRWFSGVNFL------ 227 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYR------GRPGWGFLMASLMQFG 300 L P++ +L + G F A+ + Sbjct: 228 ----------------WLSPLPIITLVVAVLAWRDLNSHATGTVHHEGRPFWYAATLFLL 271 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 + LFP+++P LT ++ S +L +L + IF+P++ YTLW Y Sbjct: 272 GFAGLVVGLFPYLIP------RQLTFMEAASPDSSLLFLLPGICIFVPLICTYTLWGYRV 325 Query: 361 MWGRMT 366 G++ Sbjct: 326 FSGKVE 331 >UniRef50_A0LMS2 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LMS2_SYNFM Length = 343 Score = 243 bits (621), Expect = 6e-63, Method: Composition-based stats. Identities = 99/369 (26%), Positives = 171/369 (46%), Gaps = 33/369 (8%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW +IG L+ + ISDG D+G+G L L A ++ ER +++ S+G+ W NQ WL+L Sbjct: 8 LPEIWLAIIGFFLLYYAISDGADLGVGIL-SLAATDERERGLIMGSIGSIWHDNQTWLVL 66 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GG LF A+P Y S YV ++ ++ L FR ++F++R ++R +W +G Sbjct: 67 LGGMLFGAFPLFYGVLLSALYVPILCMIFGLVFRGVSFEFR---ENSRHPAVWSRCFGVG 123 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 SL+ + G A G LL G+ + GS PF L L L ++ G Sbjct: 124 SLIVTLSQGFALGGLLGGLDVRE-----GVFKGSVLGWANPFSCLVALGVLCGYVMLGSN 178 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 +L KT G I RS + A+L+ + +L + V Sbjct: 179 FLVFKTAGPIQARSYRTSFAASLMTLGISILVHLFTAAKYPQMV---------------- 222 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 + E+ + +FP+L FC ++ +++ R R L + + Sbjct: 223 ------RKLTTLPEAYYIAVFPVLAAFCFVMLFVSLRRKRELAPLLCNAGIILFSFIGLS 276 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 + ++P ++P+ VS +T+ + +S+ TL ML + + LP++L+YT + + G++T Sbjct: 277 LGMYPDMIPNVVSSA--VTVHAAAASKDTLEFMLQVTSVLLPVILVYTGYKHRIFQGKVT 334 Query: 367 TETLRRNEN 375 TE + Sbjct: 335 TEAYSGKDE 343 >UniRef50_B2SK06 Cytochrome D ubiquinol oxidase, subunit II n=5 Tax=Gammaproteobacteria RepID=B2SK06_XANOP Length = 339 Score = 243 bits (621), Expect = 7e-63, Method: Composition-based stats. Identities = 87/368 (23%), Positives = 167/368 (45%), Gaps = 35/368 (9%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M L W+ +IG ++++++ DGF +GIG L P +++ + +++N+ W+GN Sbjct: 2 MDMATVLTVAWFAVIGFGVLMYVVLDGFVLGIGILAPF-RKDEAQLDLMMNTAAPIWDGN 60 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 + WL+L G L AA+P+ Y S Y+ ++L++ +L FR +AF++R K R R++W Sbjct: 61 ETWLVLCGAGLLAAFPKAYGVILSALYLPVLLMVMALVFRGVAFEFRFKAH--RSRRLWS 118 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 +GS++ G+ G L+ G+P Y+G W +PF +L G + Sbjct: 119 HAFAVGSILATFAQGVILGALVQGLPIKHD-----RYVGGIWGWFSPFAMLTGAALVFGY 173 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 L G WL LKT G + ++ ++ + V+ L WL + Sbjct: 174 ALLGSTWLILKTEGHVQQLARQLSRPLTISVLTFIGLVSAWLPSLQSHVMER-------- 225 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 W + ++ + L+ L FL+A + Sbjct: 226 -------------WFSGAHYLWLMPVPLLVAIVGFALWRATDAERSEALPFLLAMGLFVL 272 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 + ++P+++P T+W + + + ++V +++ LP++L YT+WSY+ Sbjct: 273 GFLGLVLGMWPYLVPPVY------TIWQAAAPPSSQLFVMVGLVMLLPLILGYTVWSYHV 326 Query: 361 MWGRMTTE 368 G++TT+ Sbjct: 327 FRGKVTTD 334 >UniRef50_B0UGT2 Cytochrome d ubiquinol oxidase, subunit II n=17 Tax=Proteobacteria RepID=B0UGT2_METS4 Length = 347 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 90/363 (24%), Positives = 160/363 (44%), Gaps = 36/363 (9%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 L +W +++GV + ++++ DGFD+GIG + A ND+ R ++ SV W+GN+ WLI Sbjct: 14 WLPLLWAVILGVAITMYVVVDGFDLGIGIMFTR-AENDNWRDRMMFSVAPIWDGNETWLI 72 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 L G LF + YA Y+ M+++L +L FR +AF++R K + +++WD Sbjct: 73 LGGAGLFCVFSVAYAILMPALYIPMLIMLIALVFRGIAFEFRFKADTS--KRIWDYAFHY 130 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GSL+ GI G + G ++ G W LTPF L G+ + L G Sbjct: 131 GSLLATFAQGIVLGAFVQGFEVG-----GRQFAGGTWDWLTPFSLATGVGLVCGYGLLGA 185 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 W +KT G + + ++ +++ + ++ + W+ Sbjct: 186 TWCVMKTTGALEIWARRKSEQFLVATIVMMAIVSAWVPFLGRQIEARWFS---------- 235 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 + L PLL F + ++ G FL++ +M Sbjct: 236 ------------WPSILALVPVPLLTAFVAYMIYRSVNDGHHTAPFLLSIVMFLLGFLGL 283 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 I+LFP+++P S+T+W + ++ + L+ LPI YT ++YY G++ Sbjct: 284 VISLFPYIVPP------SITIWQAANTVDSQMFALIGYAFALPITFAYTAYAYYVFRGKV 337 Query: 366 TTE 368 E Sbjct: 338 AKE 340 >UniRef50_Q67RR5 Cytochrome D ubiquinol oxidase subunit II n=2 Tax=Bacteria RepID=Q67RR5_SYMTH Length = 342 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 115/374 (30%), Positives = 183/374 (48%), Gaps = 35/374 (9%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 +E L+ IW+ L G++ ++ DGFD+G G L + R D+E+ +I S+ W+GN+ Sbjct: 1 MSHELLQVIWFALWGLLWAIYFGLDGFDLGSGMLAGIF-REDEEQHHLIGSLAPIWDGNE 59 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIA-DARWRKMWD 120 VW+I AGG FAA+P++YA FS Y+ + ++L L FR +A ++ + DA W+K+W Sbjct: 60 VWVITAGGVTFAAFPKLYATMFSSLYLPLFIILFGLMFRAVAIEFYHHMDYDAGWQKIWG 119 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 L + S + +FG+AFGN+ G+ Y G+ LL P+ LL G+L + Sbjct: 120 WVLSVASFLVAFLFGVAFGNIFQGMLLDAQG-----YHGTVLSLLNPYGLLTGVLFVVAF 174 Query: 181 ILQGGVWLQLKTVGV-IHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGP 239 ++ G WL K ++ KR V++ + Sbjct: 175 LMNGASWLAHKAPDDGFRAKADTFAKRMWPAVLVVAAAWLVYTPFAT------------- 221 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299 M N+++ P L++ P L +LT + + +GR LM SL Sbjct: 222 -------------RLMENYLKVPALFVVPALAVVLLVLTRVYLEKGRHALALLMGSLTVG 268 Query: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359 + A I LFP + PS + P SLT ++S+SS TL M +V++FLP VLLY +W+Y Sbjct: 269 ITVVAAVIGLFPNMFPSRIDPAYSLTAFNSSSSHYTLQFMFWVVVVFLPFVLLYQIWAYR 328 Query: 360 KMWGRMTTETLRRN 373 GR T + + Sbjct: 329 LF-GRQGTGSEAGH 341 >UniRef50_Q255C4 Cytochrome D oxidase subunit II n=14 Tax=Chlamydiaceae RepID=Q255C4_CHLFF Length = 353 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 97/362 (26%), Positives = 166/362 (45%), Gaps = 20/362 (5%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 L W+ ++ V + + + DGFD+G+ + ++R D+ERR+++NS+G W+GN+VWL Sbjct: 7 SMLPIAWYAILVVAVFAYSLGDGFDLGLSTIY-FISRADEERRVLLNSIGPVWDGNEVWL 65 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 I+ G LFA +P Y A S FY+ + ++ FR + ++R K +W+ WD Sbjct: 66 IIIFGGLFAGFPSAYGALLSIFYMPIWTLVLLYIFRGCSLEFRSKAESTKWKAFWDVVFC 125 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQG 184 + + G GN++LG+P + T Q S+ P+ LCG L + + G Sbjct: 126 VSGIAISFFLGAIVGNMILGLPMSPTTQYS---SLSWLLFFRPYAFLCGALVVSAFSIHG 182 Query: 185 GVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLM 244 + +KT G +H R ++ +LL V I + Sbjct: 183 ATFTLMKTSGELHHRIVKRFSYVLSAFLVIYLLLIGTTLVMIPQTKGYSFPIGS------ 236 Query: 245 KLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFT 304 PVL + + C L T I + R G FL +S +I + Sbjct: 237 ----------FIGVPTYPVLILLLAMTLACSLATKTCISKQRYGCAFLYSSCNLLLLILS 286 Query: 305 AGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 + +FP ++ S+VS S T++++ +S TL +LVIVL+ LP ++ Y ++ Y G+ Sbjct: 287 SVALVFPNLLFSTVSSEYSYTIYNAAASMKTLQSLLVIVLVGLPFIIAYGVYIYRVFKGK 346 Query: 365 MT 366 Sbjct: 347 TD 348 >UniRef50_A2RMA6 Cytochrome d ubiquinol oxidase, subunit II n=5 Tax=Lactobacillales RepID=A2RMA6_LACLM Length = 331 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 93/364 (25%), Positives = 163/364 (44%), Gaps = 33/364 (9%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 L+ W++++GV+ F +GFD G+G VA++ E I S+G W+ N+VW Sbjct: 1 MTGLQLFWFIIVGVLFSGFFFLEGFDYGVGMSAITVAKDKREVEQAIGSIGPVWDLNEVW 60 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L+ AGGA+FA++P YA+ FSGFY+ + L+L L FR + F++R + + +W L Sbjct: 61 LLTAGGAMFASFPYWYASLFSGFYLILFLILVGLIFRGVTFEFRHHSHTEKGKMIWTKVL 120 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 + S P +FG+ F ++ GVP + +F + ++ G+ + + L Sbjct: 121 GVASFAIPFLFGLMFTGMIQGVPMDA----KGNVTATFTTYVNFLSVVGGVAVMLLAWLH 176 Query: 184 GGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPL 243 G +L LKT G + R+ ++ ++ L V D F + Sbjct: 177 GLNYLALKTEGDLRKRAAKIANFLYFVLYAGEVVFAILLAVFTDFFEKHFIGTLLLLALI 236 Query: 244 MKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIF 303 + L V +++ G+ FL + L ++ Sbjct: 237 VILTLV----------------------------AHLSVRSGKEMSAFLASGLTFIALVA 268 Query: 304 TAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 +FP VM ++ +P S+ + +++S+ TL M +I L LP VL+Y W+YY Sbjct: 269 LIFQGIFPRVMIAT-NPAHSILIKNASSTGYTLKTMTIITLAILPFVLIYMGWTYYIFRK 327 Query: 364 RMTT 367 R+ Sbjct: 328 RIQK 331 >UniRef50_Q0YUS4 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YUS4_9CHLB Length = 331 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 112/366 (30%), Positives = 180/366 (49%), Gaps = 38/366 (10%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW++ I ++ + + +GFD G G LLP + +D ERR VIN++G W GN+VWL+ Sbjct: 3 LHSIWFIFIALLFTILFLLEGFDFGTGILLPFMGSDDRERRSVINTIGPFWLGNEVWLVS 62 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGGA+FAA+P YA+ SGFY +L+L SL FR AF++R K ++ +++ + + G Sbjct: 63 AGGAMFAAFPGWYASLLSGFYPLFLLMLLSLIFRGAAFEFRSKFSNPALKRVSEWIIFGG 122 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 SLVP +++G+ N + GVP Y G+ +LL PF L G S L G + Sbjct: 123 SLVPALLWGVILSNFISGVPVDA----SGNYTGALSKLLNPFALAGGAASALTFTLYGAL 178 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 +L LKT G + R+ K+ L ++ Sbjct: 179 FLSLKTSGRVKERAIGIAKKLWAPATLSLMVCIACSVTVTSIKP---------------- 222 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 I PLL ++ + + R G F+M +L Sbjct: 223 ------------------GILPLLSLLSLAPVIVLLQKNRSGVAFIMTALAIIFTALAIF 264 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 L+P V+ S+++P SLT+++++SS+ TLSI+ V+ LIF P+V++ SY+ R++ Sbjct: 265 TNLYPRVLVSNLNPAWSLTIYNASSSEYTLSILTVVALIFTPLVIIAQCLSYWVFRERVS 324 Query: 367 TETLRR 372 T++ Sbjct: 325 TDSELE 330 >UniRef50_C0R3J3 Cytochrome d ubiquinol oxidase, subunit II n=31 Tax=root RepID=C0R3J3_WOLWR Length = 340 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 92/368 (25%), Positives = 161/368 (43%), Gaps = 36/368 (9%) Query: 3 DYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQV 62 L IW LLI + ++++++ DGFD+GIG LLP +D R +I+S+ W+GN+ Sbjct: 6 SLINLPLIWGLLIAIAVLLYILMDGFDLGIGILLPFAP-SDKCRDHMISSIAPFWDGNET 64 Query: 63 WLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAG 122 WL+L GG LFAA+P Y+ FY+ +I++L L R ++F++R K ++R++WD Sbjct: 65 WLVLGGGGLFAAFPLAYSILMPAFYIPIIIMLLGLIVRGVSFEFRFKAE-GKYRRLWDYA 123 Query: 123 LVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVIL 182 GSL G+ G + GV + G + + F ++ G+ + L Sbjct: 124 FHFGSLGAAFCQGMILGAFIHGVEVN-----GRNFSGGQFDWASAFSVMTGIAVIFGYAL 178 Query: 183 QGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNP 242 G WL +KT + ++ V + L + Sbjct: 179 LGSTWLIMKTENITQEWARKVASYTLGFVGIFMGLVSVVTPFLNERIKNFWFSM------ 232 Query: 243 LMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAI-YRGRPGWGFLMASLMQFGV 301 L+ PLL + + + R F ++ + F Sbjct: 233 ----------------PNFYYLFSIPLLTSWLFFMLWFDLQNTKREYRPFFLSIAIFFMG 276 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 GI+++P+++P T+ D+ +S +LS+ML++++ LPI+L YT + YY Sbjct: 277 YLGLGISIYPWIIP------FQYTILDAAASGPSLSLMLIVIIPLLPIILTYTGYCYYVF 330 Query: 362 WGRMTTET 369 G+ E Sbjct: 331 RGKSNYEH 338 >UniRef50_D0XNI3 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XNI3_9CAUL Length = 345 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 93/363 (25%), Positives = 159/363 (43%), Gaps = 26/363 (7%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L+ IW LI V +++++ DGFD+GIG L P A++ +ER +++N++ W+GN+ WL+L Sbjct: 5 LQLIWAGLIAVAVLLYVTLDGFDLGIGILFPF-AKSKEERDVMMNTIAPVWDGNETWLVL 63 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GG L AA+P Y+ Y+ ++L+L L R +AF++R + + R RK W G Sbjct: 64 GGGGLLAAFPLAYSVLMPALYLPILLMLAGLILRGVAFEFRFRARN-RGRKFWTQMFSGG 122 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S++ V G+ G + GV + G + TP+ LL + L GG Sbjct: 123 SILTAVAQGLVLGGFIQGVTVRED-----RFAGGPFDWFTPYTLLVAAGLVAGYALLGGA 177 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 WL +KT +H ++ T ++++V + + + G L Sbjct: 178 WLMMKTKDNLHGDAKRWTSISSVVVTVLLVAVSVATLLIHPRVAARWGFDLGDGFALDAS 237 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 V + + L + RG W F+ A L+ Sbjct: 238 VLMPLLPIPLLGL-------------AGLALVWVMSRRGSHRWPFVGAILVFLSGYLGLA 284 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 + P+V+P +L + + L +MLV + LP++L YT W Y+ G++ Sbjct: 285 VGFAPYVVP------YALDFRQAAAPDNALGLMLVGTVAILPLILAYTGWVYWVFRGKID 338 Query: 367 TET 369 E Sbjct: 339 EEA 341 >UniRef50_C2KPN0 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Mobiluncus RepID=C2KPN0_9ACTO Length = 387 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 105/394 (26%), Positives = 181/394 (45%), Gaps = 62/394 (15%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L+ +W++L+ V+ ++I +G+ +G G L+ ++ ++D ER ++ S+G HW+GN+VWL+ Sbjct: 5 LQILWFILVAVLWAGYLILEGYGLGTGMLMRIIGKSDTERGQIVRSIGPHWDGNEVWLLT 64 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGGA FA+ P YA FSG Y+A+ L+L L R A ++R K+ WR WD G I Sbjct: 65 AGGATFASSPEWYAVMFSGMYLALFLILVCLIVRISAIEWRNKVDSESWRNKWDWGHTIS 124 Query: 127 SLVPPVVFGIAFGNLLLGVPF---------------------------AFTPQLRVEYLG 159 + + P++ G AFGNL+ G+ + L Sbjct: 125 AWLVPILLGTAFGNLVSGMMIAVVDPKQPFTPIPPDEIDPSKHVHNLIGLGDMPLGQLLS 184 Query: 160 SFWQLLTP----FPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCF 215 F+ + +P F LL GL+ + + QG ++L LKT + RS+ + AL+ Sbjct: 185 LFYNVPSPINGVFNLLGGLVIASLCLTQGALFLSLKTTDEVRERSEALAPKLALVSTALT 244 Query: 216 LLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCP 275 + W G + IF ++ C Sbjct: 245 AVFAIW------------------------------GTFAYMGAGFIFALIFLVIAAVCL 274 Query: 276 LLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVS-PISSLTLWDSTSSQL 334 ++ + ++ G F+ S + +FP+VM SS++ SLT+W+S+++ Sbjct: 275 IVGLFFAFQRSIGKAFIFNSAGVAFAVAWVFAMIFPYVMKSSINTEKYSLTIWESSATPG 334 Query: 335 TLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTE 368 T +M + +I +P+VL YT+WS Y R++ Sbjct: 335 TQIVMTIAAVILVPVVLGYTIWSVYMFRSRISPG 368 >UniRef50_C8WK01 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Coriobacteriaceae RepID=C8WK01_EGGLE Length = 345 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 113/374 (30%), Positives = 180/374 (48%), Gaps = 33/374 (8%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 + + +W+LLI V++ + + DGFD+G G L P VA+ D+E+ +V S+G W+GN+ Sbjct: 1 MEITFFQGLWFLLIFVLIAGYFVLDGFDLGAGVLYPFVAKGDEEKAVVRTSIGPVWDGNE 60 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWL+ AGGALFAA+P YA FSGFY+A++LVL L R ++ +YRG +W K+WD Sbjct: 61 VWLLTAGGALFAAFPAAYATTFSGFYLAVMLVLFGLIVRAVSLEYRGIDH--KWAKVWDG 118 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 +GSL+P ++ G+A GN+ G+P + L+TPF LLCGLL L M + Sbjct: 119 CFFVGSLLPALLLGVAVGNIYAGIPMSANGDYTGI---PLLGLITPFTLLCGLLGLSMFL 175 Query: 182 LQGGVWLQLKT--VGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGP 239 QG WL LK + R+ ++ ++ F+ + +GI Sbjct: 176 AQGASWLALKAPKPSDLQARAAKLRFPLQIVSLVLFVAVTAYALLGIQ------------ 223 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299 M+ + + + L A + F+ S Sbjct: 224 -------------PAMDPLLGAVRWLLAALFVVAIVASVFFAKSKDCDLGAFIAQSGAAA 270 Query: 300 GVIFTAGITLFPFVMPSSVSP-ISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSY 358 ++ ++FP + +S ++T + SS+LTL M +I + LP+VL+Y + Y Sbjct: 271 LLVLLLAASMFPNFVVASADSVGPAITAMSAASSELTLMWMTIITCVGLPLVLVYHVIIY 330 Query: 359 YKMWGRMTTETLRR 372 GR+ E L Sbjct: 331 RTFRGRVKEEDLAH 344 >UniRef50_Q46G86 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Methanosarcina RepID=Q46G86_METBF Length = 347 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 109/371 (29%), Positives = 189/371 (50%), Gaps = 29/371 (7%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 ++ L IW+ L VI V+ I D F +G G L+P +A + +R + +SVG W GN+ Sbjct: 5 LTHDMLAIIWFFLWCVIWGVYFIVDSFSLGAGLLVPFIATDKAQRMQIQSSVGPFWGGNE 64 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWLILA G FAA+P V++ F+ Y+ M+L+L L R ++ +Y K + +K+ Sbjct: 65 VWLILAAGGTFAAFPLVFSKMFTFLYLPMMLLLIGLIARGISIEYLHKDENPHIQKILMW 124 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 G GSL+ +V G+AF N G+ A Y+G+ L +P+ L+ G+L + M + Sbjct: 125 GWFAGSLLISLVLGVAFANFFKGLEIA----SGGVYIGTLIGLFSPYALIGGVLFVLMSV 180 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 G W+ +KT G I +++ K++AL+V++ L+ + ++GI+GF Sbjct: 181 TSGAFWINVKTEGAIAIKAGDLAKKSALIVLVLALVYLAYSFMGIEGFT----------- 229 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 N+ P L++ P L +L V + R F L V Sbjct: 230 --------------TNYSAMPALYLLPGLAVVTAVLAVFFAKKDRIFPAFCSNLLAFLFV 275 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 + + +++P+++ SSVS + ++++ SS +TLS+ML L+F+PI+++Y LW+Y Sbjct: 276 VESGLASIYPYMLKSSVSSEYGIDIFEAASSHMTLSVMLGGALVFVPIIIIYQLWAYTLF 335 Query: 362 WGRMTTETLRR 372 ++ Sbjct: 336 REKIKETDQVE 346 >UniRef50_B4RAL0 Cytochrome oxidase, subunit II n=2 Tax=Proteobacteria RepID=B4RAL0_PHEZH Length = 341 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 92/363 (25%), Positives = 153/363 (42%), Gaps = 29/363 (7%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW +I + ++++++ DGFD+G+G L P + ER +++SV W+GN+ WL+L Sbjct: 5 LPLIWAGIIAIAVLMYVLLDGFDLGVGILFPFAG-SPAERDTMMDSVAPVWDGNETWLVL 63 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GG LFAA+P Y A Y+ ++++L +L R +AF++ R ++ W A G Sbjct: 64 GGGGLFAAFPAAYGALMPALYIPILIMLMALILRGVAFEF-RLRGRRRGKRFWTAAFAGG 122 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S+ + G G + GV ++ G + LTP+ LL L L G Sbjct: 123 SIAATLAQGFVLGGFIQGVTLRE-----GQFAGGAFDWLTPYTLLVAAGLLAGYALLGAT 177 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 WL KT +H R++ + + + +G Sbjct: 178 WLIWKTEDELHGRARRWAWLSTAATAALLAVVSVATLLVHPRIAERWGFQDGGI------ 231 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 N E L PL+G ++ + R G FL A + Sbjct: 232 ----------NTGEILPLLAIPLVGLAGLIMVAAGLRRRSHGLPFLGAFAIFLSGYLGLA 281 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 + FP ++P +T + S+ L +MLV V I LP +L YT W Y+ G+++ Sbjct: 282 VGFFPNIVP------YDMTFRQAASADNALGLMLVGVAILLPFILGYTAWVYWVFRGKVS 335 Query: 367 TET 369 + Sbjct: 336 ADA 338 >UniRef50_C7HZB4 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Thiomonas intermedia K12 RepID=C7HZB4_THIIN Length = 341 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 83/369 (22%), Positives = 159/369 (43%), Gaps = 38/369 (10%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 + L +W+L+IG+ +V +++ DGFD+G+G L V + R++++ S+G+ W+ N+ W Sbjct: 10 HHVLATVWFLIIGLFMVFYVVLDGFDLGVGVLSLFVG--ERRRKVMMASLGSIWDANETW 67 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L++ GG LF A+P Y G Y+ +IL+L R ++F++ + + W A Sbjct: 68 LVVIGGTLFGAFPLAYGTVLHGLYIPIILMLLGFMLRGVSFEFH---ELSERKAFWGAMF 124 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 +GSL+ + G A G LL GV + Y+GS W+ L+PF ++ L + + Sbjct: 125 GLGSLLATIAQGFALGGLLNGVKV-----VNGVYVGSVWEWLSPFSVIVVLGVVAGYAML 179 Query: 184 GGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPL 243 G +L +KT I + A +++ + W + Sbjct: 180 GSTYLIIKTKDDIQAGCYQRGQLLAWIMLAVGAVVTVWTPLQFPQIFARWLTI------- 232 Query: 244 MKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIF 303 + P L ++ + A+ R F+ L+ Sbjct: 233 ---------------PNIYFFAVLPALALLSFVMLLRALKRQAEVAPFVWTMLIFLFSFA 277 Query: 304 TAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 T +P+++P SLT+ + S TL ML+ + + +P+++ Y ++ Y G Sbjct: 278 GLAATWYPYIVP------GSLTIDQAASDSGTLVFMLIGIGMLIPVMITYNVYQYIVFRG 331 Query: 364 RMTTETLRR 372 ++ + Sbjct: 332 KIDPDAEHA 340 >UniRef50_B6IQW9 Ubiquinol oxidase subunit II, cyanide insensitive n=32 Tax=Proteobacteria RepID=B6IQW9_RHOCS Length = 339 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 96/363 (26%), Positives = 158/363 (43%), Gaps = 35/363 (9%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L I+ + + ++++ DGFD+G+G L P D +R +++NSV W+GN+ WLIL Sbjct: 8 LTLIFAGIGAFAVFMYVLLDGFDLGVGILFPWAPGGDADRDLMMNSVAPIWDGNETWLIL 67 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 G ALFA +P YA Y+ ++L+L +L FR +AF++R K + R++WD +G Sbjct: 68 GGAALFAGFPLAYAVLLPALYLPLLLMLIALIFRGVAFEFRFKADTS--RRLWDWSFHLG 125 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 SL G+ G + G +Y G + LTPF ++ G+ + L G Sbjct: 126 SLFATFAQGVILGGFIQGFEV-----QGRDYAGGLFDWLTPFSIMTGVALVAGYALLGAA 180 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 WL +KT G + S A L V++ + W + D Sbjct: 181 WLVMKTDGALQDWSYRVAGLALLAVLVFIAVVSLWTPLHSDAIRDRWFS----------- 229 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 L PLL A+ R R F++A + Sbjct: 230 -----------LPNLYYLSPVPLLTAAVAAALFGALRRRRETAPFVLAMGLFLLSYLGLA 278 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 I+L+P+++P + TLWD+ S + +LV + +P LLYT ++Y+ G++ Sbjct: 279 ISLWPYLVPP------AFTLWDAASPPESQVFLLVGLAFLIPTTLLYTAFTYWVFRGKVR 332 Query: 367 TET 369 Sbjct: 333 PGA 335 >UniRef50_Q040K6 Cytochrome bd-type quinol oxidase, subunit 2 n=53 Tax=Lactobacillales RepID=Q040K6_LACGA Length = 340 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 95/363 (26%), Positives = 181/363 (49%), Gaps = 34/363 (9%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 + L+ +W+LLIG++ ++F ++GFD G+G +ARND E+ +++ ++G HW+GN+VWL Sbjct: 6 DFLQLLWFLLIGLLFMIFYFTEGFDYGVGMATKFLARNDQEKHLMMETIGPHWDGNEVWL 65 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 I AGGA+FA++ YA+ FSG+Y+ + L +L R ++F++ ++W + L Sbjct: 66 ITAGGAMFASFSDWYASLFSGYYILLFFTLFALIIRGVSFEFSAHAETEHGFRIWTSALF 125 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQG 184 GSL+ P + FG+L+ GVP + S W ++ P ++ G+ + + ++ G Sbjct: 126 WGSLLAPFFLTMMFGSLIQGVPIDA----QGNMSLSVWNIVNPLSVVAGVAGVLLCLIHG 181 Query: 185 GVWLQLKTVG-VIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPL 243 +L+L+ + R+ ++ L+ L ++ ++ D F L + + + Sbjct: 182 INFLRLRIDDPELSERAASLNEKLYLVAYLGEVVFALLVFFQTDFFKLRPISSTIITLII 241 Query: 244 MKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIF 303 + L A +++ + + F+ + L GV+ Sbjct: 242 VVLTAWSD----------------------------ISLIKNKQVAAFVTSGLTLVGVVG 273 Query: 304 TAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 LFP V+ ++ SL + + +S+LTL +M ++ LI LPI L+Y +WSY Sbjct: 274 LLFNGLFPRVLIAT-DSAHSLLIKTAANSKLTLEVMTIVALILLPIALVYIIWSYVVFRR 332 Query: 364 RMT 366 R+ Sbjct: 333 RIK 335 >UniRef50_Q4UWQ0 Cytochrome D oxidase subunit B n=3 Tax=Xanthomonas campestris pv. campestris RepID=Q4UWQ0_XANC8 Length = 339 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 76/372 (20%), Positives = 148/372 (39%), Gaps = 37/372 (9%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 E ++ + + +V +++ DG D+G+G L R+D +R ++ S+ W+GN+ Sbjct: 5 LSVELMQHLSAAALAFTVVTYVVLDGTDLGVGMLFA-ANRSDADRHLMAYSILPVWDGNE 63 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 WL+L GG+L A +P YA + YV ++++L +L R +A +YR ++ R R++ D Sbjct: 64 TWLVLGGGSLLAMFPSAYAIFLNATYVPLVVMLLALICRGVALEYRDQLGTDRRRRVLDV 123 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 ++ SL+ G+ G L GV +Y G+ + L PFPL CG+ + + Sbjct: 124 VFMVASLLATFCQGVVAGTYLAGVAHRA-----GQYAGNGREWLQPFPLFCGVALVVGYL 178 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 L G WL ++ G + R++ + +++ L WL + DA+ Sbjct: 179 LLGACWLVWRSEGQLQQRARHQARVLGIVLGALLTLGVVWLARLTPIYAQRLGDAHISVP 238 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 + + + + Sbjct: 239 LGTS-------------------------VLGLMVAMYLLMRSRHAFLPLFAVLGVVVAT 273 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 ++P V+P +TL + S + +ML+ + +P L Y+ + +Y Sbjct: 274 YAGVLAIVYPMVLPP------DITLAQAASPPASQGVMLLAFAVLVPCTLAYSSYGFYVF 327 Query: 362 WGRMTTETLRRN 373 G++ Sbjct: 328 RGKVKPRGHAAE 339 >UniRef50_B1VE35 Cytochrome d ubiquinol oxidase subunit 2 n=4 Tax=Corynebacterium RepID=B1VE35_CORU7 Length = 321 Score = 230 bits (588), Expect = 4e-59, Method: Composition-based stats. Identities = 105/365 (28%), Positives = 169/365 (46%), Gaps = 49/365 (13%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L +W+ LI + + + +GF G+G LLP + R++ R +I ++G W+GN+VWLI Sbjct: 5 LPTLWFGLIVFLFAGYFMLEGFGFGVGLLLPFLGRDEARRSAMIRTIGPVWDGNEVWLIT 64 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGGALFAA+P YA FSGFY+ + L+L L R + ++R K+ A+WR DAG++ G Sbjct: 65 AGGALFAAFPAWYADMFSGFYLPLFLILLGLIVRIVGLEWRTKVNSAKWRAWCDAGIITG 124 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S + P+V+G+A NL+ G+P E + L P+ L+ + + L G Sbjct: 125 SWISPIVWGVAVANLVSGIP---------ENAAHVYPLFHPYALVGAAALVCVFALHGLT 175 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 +++LKT GV+ +Q A+ ++ + W +G Sbjct: 176 FIRLKTAGVLRKEAQRFITPLAIGSIVFGGVFALWTQLG--------------------- 214 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 W+ +L L +V A R GW F +L V+ A Sbjct: 215 ------------YGKAWTWVPLVLAVVGLLGSVAATVAQRDGWAFTATALAIVSVVVLAF 262 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 +FP + + L +W + S+ TL IM +I P VLLY ++Y+ R+ Sbjct: 263 GAMFPMLW-------TDLDIWQAASNPYTLKIMTWAGVIVTPFVLLYQGYTYWIFRRRIV 315 Query: 367 TETLR 371 E + Sbjct: 316 AEPVH 320 >UniRef50_B8ESY7 Cytochrome d ubiquinol oxidase, subunit II n=4 Tax=Rhizobiales RepID=B8ESY7_METSB Length = 335 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 92/360 (25%), Positives = 167/360 (46%), Gaps = 40/360 (11%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 + W ++ ++++++ DGFD+G+G LL L+ ND RR ++ ++ W+GN+ WL++ Sbjct: 1 MTEFWTAVLAFTILLYVLLDGFDLGVGMLLALMP-NDRGRRHMLAAIAPVWDGNETWLVV 59 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 LF +P VY+ S FY+ + ++L L R ++F++R K R WD+ ++G Sbjct: 60 TATILFGVFPLVYSILLSAFYLPVFVMLAGLILRGVSFEFREK--SPHHRAFWDSCFILG 117 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 SLV + G+ G L+ G+P Y G + L+ F LLCG L G Sbjct: 118 SLVASFIQGMMIGALVEGLPV-----ENGRYAGGPFGWLSSFALLCGAGLCVGYALLGAG 172 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 WL KT + + V+ + + + Sbjct: 173 WLTRKTTQDVQALAFGILPSLLAGVLAFLAIIFVYSLL---------------------- 210 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 L A M+ + E PVL++FPL+G ++ ++I R R FL + + T Sbjct: 211 ---LDLAVMHRWRERPVLFVFPLMGIAACVIMAVSIRRRRELLPFLSGASIFAAAFLTLA 267 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIV-LIFLPIVLLYTLWSYYKMWGRM 365 ++ +P+++P S+T+ ++ + + + + M LI LPI ++YTL Y+ G++ Sbjct: 268 VSFYPYMIP------FSVTIAEAAAPRSSQAFMFWGAGLIVLPITIIYTLVVYFVFKGKV 321 >UniRef50_A5FA89 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Bacteroidetes RepID=A5FA89_FLAJ1 Length = 358 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 98/376 (26%), Positives = 182/376 (48%), Gaps = 41/376 (10%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 + F W++++ IL V+++ DG+D G G + A + +++ + +++G W+ N+VWLI Sbjct: 1 MEFFWYVVLMGILAVYLVLDGYDFGAGIIHLFFADTEKDKKAITSAIGPFWDANEVWLIA 60 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGG LF A+P +YA++FSGFY+ +I++L L FR + + RG+I + W +WD I Sbjct: 61 AGGVLFFAFPTLYASSFSGFYLPLIMILWLLIFRAIGLEMRGQIHNPMWESIWDKAFGIA 120 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFW----------------QLLTPFPL 170 SL+ + FGIA GN++ GV F+ ++ F L Sbjct: 121 SLLLALFFGIALGNIVRGVNLGMVQNGVSTQEPHFFFLPLWNPTFSPQANELGIIDWFTL 180 Query: 171 LCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFV 230 G++S+ + + G W+ KT ++ + + +++++ + Sbjct: 181 FLGIVSVVALTIHGANWIIYKTNSSLNPKLKKVVFVLNIVLLVLVCI------------- 227 Query: 231 LLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWG 290 +++ + +NFVE+P+LW FPLL F + G G Sbjct: 228 ------------SLQIWHFIEPKPFHNFVENPILWFFPLLTFVGIAGLFKVRSFKKDGHG 275 Query: 291 FLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIV 350 F+ ++L G + +++FP V+PS+ SLT++++ + + LS L I L +V Sbjct: 276 FIFSTLFLVGGFASTAVSIFPNVLPSTNKVNPSLTIYNTAAHEYGLSAGLSWFFIALFLV 335 Query: 351 LLYTLWSYYKMWGRMT 366 ++Y + Y G+M Sbjct: 336 IIYFIIQYRVFSGKMD 351 >UniRef50_C8XGP9 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGP9_NAKMY Length = 338 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 116/363 (31%), Positives = 182/363 (50%), Gaps = 35/363 (9%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 TL +W++++ F + +GFD G+G L +V R D ERR+ INS+G W+GN+VWLI Sbjct: 2 TLPTVWFVIVAFFWTGFFVLEGFDFGVGALHKVVGRTDTERRVAINSIGPFWDGNEVWLI 61 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 +AG ++FAA+P YA+ FS Y+A+ L+L +L R ++F++RGK A WR W L + Sbjct: 62 VAGASMFAAFPNWYASWFSALYLALWLLLAALIVRGVSFEFRGKFAAPAWRHTWGWTLTV 121 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GS++ P++ GI G+LL G+P ++ GSF LLTPF LL GL L + +L G Sbjct: 122 GSVLAPLLIGIGLGDLLAGLPIDAA----GDFTGSFLDLLTPFGLLLGLTLLTLSLLHGA 177 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 +L L+T G + RS+ +R AL + L+A W+ V Sbjct: 178 AFLTLRTTGPVLERSRALVRRLALPAVALVLVAAVWMVVLAA------------------ 219 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 + V A+ F+ ++ ++ Sbjct: 220 -------------PGGWGYLAVAVPAVAVIAAAVTALPGRAGPATFVATAISIGALVAAL 266 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 + L+P ++ S+ P SLT+ +S SS +L +M V + P+VLLY W+Y+ R+ Sbjct: 267 FVCLYPTLLVSTTDPAYSLTVTNSASSPYSLQVMTVAAAVLTPLVLLYQGWTYWVFRRRL 326 Query: 366 TTE 368 TE Sbjct: 327 RTE 329 >UniRef50_A4SZB4 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 RepID=A4SZB4_POLSQ Length = 328 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 87/355 (24%), Positives = 162/355 (45%), Gaps = 37/355 (10%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 + IW L+ +++ ++I DG+D+G+G L+PL+ R+D ER +++SV W+ N+ WL+L Sbjct: 5 ITLIWGGLLAFVVLAYIIFDGYDLGVGILIPLM-RSDQERAQMLSSV-RLWDANETWLVL 62 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GG LFA +P Y+ F Y+ +I +L SL R + ++R + + + +WD+ +G Sbjct: 63 GGGGLFAVFPLAYSIIFPALYLPLIGMLLSLVIRGVVSEFRWQ--NKQSAMIWDSLFFVG 120 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S + G+ G L+ G+ + Y G LTPF ++ G+ L G Sbjct: 121 SFLAACFQGMILGALVQGIQV-----VDHAYAGGPLDWLTPFSVMTGIALALGYSLLGAT 175 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 WL LKT G + ++ K L++L + W ++ Sbjct: 176 WLVLKTDGELQNKAFSLIKVLGSLMVLMVGVVSLWTPFLKQDYLSRWFA----------- 224 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 + ++ + PLL + A+ R F+ + Sbjct: 225 -----------WPQAIYVLPVPLLLAAAIFILFRAVNRRNTWVPFVATISIFLLSYIGLL 273 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 I++FP+V+P + +TLW++ + + +L LI +PI+L+YT ++++ Sbjct: 274 ISIFPYVVPDT------ITLWEAAAPLSSQKFLLPGTLILVPIILIYTTYAHWVF 322 >UniRef50_Q2JM63 Cytochrome d ubiquinol oxidase, subunit II n=30 Tax=Cyanobacteria RepID=Q2JM63_SYNJB Length = 349 Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats. Identities = 79/372 (21%), Positives = 162/372 (43%), Gaps = 36/372 (9%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 L +W+ ++G+ L ++++ DGFD+G+G L L A ++ R I++ S+G W+ N+ WL+ Sbjct: 10 FLPQVWFFILGLFLFLYVLLDGFDLGVGIL-SLTASSETRRSILMTSLGNVWDANETWLV 68 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 L GG+LF ++P YA + Y+ +++++ L R ++F++R + + +W+ + Sbjct: 69 LMGGSLFGSFPLAYATILNALYIPLVIMVVGLILRAVSFEFRENADN---KLVWNLAFGV 125 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GS + + G A G++ G+ + GS W LT LL L + +L G Sbjct: 126 GSFLAALGQGFALGSVFEGIRVD----EAGHFAGSPWDWLTWRTLLVALTLIQGYVLIGS 181 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 +L +KT G + A +L + + + Sbjct: 182 AYLIVKTTGELQETYYKTATIATWTTLLGAVFITISTPIMSEQARAQLFSPPLFY----- 236 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 + P+LG L + ++ R + L+ Sbjct: 237 -----------------IFAAIPVLGLLLVALLLRSLRRREENSVLVYTFLIFALSFIGL 279 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 G +FP ++P S+T++++ +S +L ML + +P++L Y +++Y G++ Sbjct: 280 GFMVFPNIIPP------SVTIYEAAASPSSLVFMLTFIGFLIPVILSYNIYNYVVFRGKI 333 Query: 366 TTETLRRNENEL 377 + + E ++ Sbjct: 334 VVQEVAAEEAKV 345 >UniRef50_B2IDR4 Cytochrome d ubiquinol oxidase, subunit II n=19 Tax=root RepID=B2IDR4_BEII9 Length = 337 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 91/364 (25%), Positives = 149/364 (40%), Gaps = 36/364 (9%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 L IW ++ + +++I DGFD+G+G L R++ R +++SV W+GN+ WL+ Sbjct: 7 YLPLIWAGILATAVGLYVILDGFDLGLGILF-FTTRDETARDDMMSSVAPFWDGNETWLV 65 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 L GG L AA+P Y+ Y+ +IL+L +L R +AF++R A W WD Sbjct: 66 LGGGGLLAAFPLAYSIIMPALYIPIILMLLALILRGVAFEFR--WAAKPWHGFWDVAFAG 123 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GS + + G G L+ G+ + G + +PF LLCG + L Sbjct: 124 GSTLAALAQGFVLGGLIQGITV-----KDNAFAGGPFDWFSPFALLCGFGLVAGYGLLAC 178 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 WL +KT G + ++ L V+ C + W + Sbjct: 179 CWLLMKTSGGLAAHARRLALPFLLAVVFCAAVVSIWTPLRYPAIAERWFST--------- 229 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 LW P L A+ RG F + Sbjct: 230 -------------PNIFYLWPLPAATGALAFLVFRALRRGDDFIPFFGVVGIFLLCFAGL 276 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 I+ +P+++P S+ LW + + +L ML+ V I LP++L YT++ Y+ GR+ Sbjct: 277 AISAYPYLVP------HSIDLWQAAGAPESLKFMLIGVSILLPVILGYTIFVYWTFRGRL 330 Query: 366 TTET 369 Sbjct: 331 RVGE 334 >UniRef50_A7MEL0 Putative uncharacterized protein n=2 Tax=Cronobacter RepID=A7MEL0_ENTS8 Length = 340 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 71/367 (19%), Positives = 143/367 (38%), Gaps = 43/367 (11%) Query: 12 WLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGAL 71 + ++++++ DG D+G+G L P ++ R+ + S+ W+GN+ WL+L GAL Sbjct: 16 AGALAAGVLIYVLLDGADLGVGLLAPF--QSPQARQQMNISLLPVWDGNETWLVLTAGAL 73 Query: 72 FAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPP 131 A +P ++ +S Y+ + ++L ++ R +A +YR +++DA + GS + Sbjct: 74 LAMFPVAFSILYSALYLPVYIMLLAMIVRGVAIEYRHLRP-----RLFDALFIAGSWLTS 128 Query: 132 VVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLK 191 + G G + G+ + G L+PF + C + L G WL + Sbjct: 129 LSQGATMGAWVEGIT-----HNGATFTGGPMDWLSPFSVFCAMALSVGYALLGACWLIWR 183 Query: 192 TVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLP 251 G ++ ++ ALL W + + L Q Sbjct: 184 CEGELNAWARRQAMWLALLTAALLAGLLVWTVQLNETYRLHLQLWR-------------- 229 Query: 252 GAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFP 311 +G L ++ + + R M L+ + +FP Sbjct: 230 -----------WSGPLVAVGLLAFLGVILTLRQRRDFLPLAMTLLLFITAFGGMLLAVFP 278 Query: 312 FVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLR 371 F++P +L L + + T +ML+ +F+PI L+Y W ++ G++ Sbjct: 279 FILPP------NLLLIQAAAPPATQKLMLIAFGVFVPITLIYNSWGFWVFRGKIHAAREE 332 Query: 372 RNENELY 378 + + Sbjct: 333 ERHSRRH 339 >UniRef50_Q2SP33 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SP33_HAHCH Length = 331 Score = 221 bits (563), Expect = 3e-56, Method: Composition-based stats. Identities = 89/364 (24%), Positives = 156/364 (42%), Gaps = 40/364 (10%) Query: 8 RFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILA 67 I+ LLI V ++++++ DGF +G+G L P +++ D +R I I S+ W+ NQ WL+ Sbjct: 4 ALIYLLLIAVGVLMYVLLDGFSLGVGILSPWLSKAD-DRAIAIKSLSHLWDSNQTWLVFG 62 Query: 68 GGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGS 127 G LFA +P+ YA S Y+ +IL+L +L FR +AF++ K +R WD GS Sbjct: 63 GVVLFAGFPKAYATVLSQLYLPIILMLIALIFRGVAFEFYFKSHTSRG--WWDFSFSFGS 120 Query: 128 LVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVW 187 + + GI G+L+ G P + TPF L+ + + L G W Sbjct: 121 TLATLSQGIVLGSLVQGFSLEPQPSEQ-------IAWFTPFSLMTAVALVCGYALLGSCW 173 Query: 188 LQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLV 247 L K+ G + + + + VM L W+ + Sbjct: 174 LVRKSSGRLQVSVRRLGIISLFAVMFFLALVSVWMLLAQPQVFQRWL------------- 220 Query: 248 AVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYR--GRPGWGFLMASLMQFGVIFTA 305 + +L PLL + L + G +A + Sbjct: 221 ---------TWPTGLLLAPVPLLSAYVGLRLWQMLRSGEGNDLKPLGLAMALFGLAFIGL 271 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 +FP+++P LT+W++ + + + S L+ +++FLPIV+ Y +++Y G+ Sbjct: 272 AAGMFPYIIP------GQLTIWEAIAPERSTSFTLIGIVLFLPIVIAYNIYNYRVFSGKT 325 Query: 366 TTET 369 T+ Sbjct: 326 NTQD 329 >UniRef50_C2CTD2 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Corynebacterium striatum ATCC 6940 RepID=C2CTD2_CORST Length = 336 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 95/368 (25%), Positives = 161/368 (43%), Gaps = 39/368 (10%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLV-----ARNDDERRIVINSVGAHWEGNQ 61 L +W+++I + + +GFD G+G LLP + A +D R + ++G W+GN+ Sbjct: 3 LNTVWFIIIAFFFTGYFVLEGFDFGVGMLLPFLRGESAADSDARRTAAVRAIGPVWDGNE 62 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWLI+AG ++FAA+P YA FSGFY+ ++L++ +L R ++ ++R K+ WRK D Sbjct: 63 VWLIVAGASIFAAFPEWYATLFSGFYLPLLLIVTALIIRGVSLEWRVKVDTLAWRKRCDI 122 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 G+ +GS +P +++G+A N++ GV F+ + G F LL P LL G L + Sbjct: 123 GIALGSYLPALLWGVAMTNIVAGVAFSSPGHVDSVIDG-FLGLLNPRGLLGGAAFLLLFA 181 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 G ++L LKT + + + + L Sbjct: 182 FHGALFLGLKTHAPVRTQVHAIARGWLAIATLAVGAIYLV-------------------- 221 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 WM WI + ++ GR F + V Sbjct: 222 ------------WMQLNFGKSWTWIALAAVALALVAAFAGLWSGRDRTAFFGTAAAIIAV 269 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 LFP V+PS L ++ +++S TL IM ++ P VL+ W+Y++ Sbjct: 270 GLALFGALFPNVLPSVTDVA-GLDIYTASASPYTLKIMTWAAVVLAPAVLIGQGWTYWQF 328 Query: 362 WGRMTTET 369 R+ + Sbjct: 329 RARIGVDA 336 >UniRef50_A6C9B8 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C9B8_9PLAN Length = 346 Score = 215 bits (547), Expect = 2e-54, Method: Composition-based stats. Identities = 85/372 (22%), Positives = 169/372 (45%), Gaps = 31/372 (8%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 + +W +L+ +++ +++ DGFD+G+G L L+AR+ E++ +I S+ W+GN+VWLI Sbjct: 1 METVWLILLVLMIATYIVLDGFDLGVGVLHLLIARDRSEQKQIIQSIAPVWDGNEVWLIA 60 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 AGG + A+P ++ FSGFY+ + +V+ L FR ++ + ++D+ W W+ L + Sbjct: 61 AGGTMMMAFPGFLSSMFSGFYLPLTMVVWLLIFRAISIELPHYLSDSLWIHFWNLMLFVA 120 Query: 127 SLVPPVVFGIAFGNLLLGVPFA-----FTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 S + ++ G A N+ GVP F P +G +L + +L G+ S ++ Sbjct: 121 SGLLIIILGAAMANIYRGVPLDATGSFFEPLWTNFRIGPPTGILDWYTILSGVTSATFLL 180 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 G +WL KT G + ++ A + L+ W Sbjct: 181 HHGALWLVAKTDGRVQQHARQAATWLWTGSIGLTLVIFIASWYVQPLARTS--------- 231 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 F E+P I PL L + ++ + FL + L + V Sbjct: 232 ----------------FSETPWKIILPLAAVLSLLASGYLRWKNKNMPAFLSSGLFIYLV 275 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 IF+ + ++P ++P ++P LT+++++ L+ L + + +V +Y + + Sbjct: 276 IFSGAMAIYPNILPG-LNPEHHLTIYNTSPGPEKLTTTLYWWIPGILLVGVYFTILFRSL 334 Query: 362 WGRMTTETLRRN 373 ++ + + Sbjct: 335 PAVISASSEDDH 346 >UniRef50_D2L7C6 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L7C6_9DELT Length = 337 Score = 215 bits (547), Expect = 3e-54, Method: Composition-based stats. Identities = 83/372 (22%), Positives = 154/372 (41%), Gaps = 35/372 (9%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M +L W+ ++ ++L +++ +DG+D+G G L L + R I+ S+ W N Sbjct: 1 MDGQISLADAWFGILALLLWLYVFTDGYDLGAGIL-CLHEADPVHREIMAESIDGVWHAN 59 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 Q WL+L GG LF A+P VY + Y+ +L ++ R + +YR K + + W Sbjct: 60 QTWLVLLGGVLFGAFPLVYGTVLAALYLPAGFLLFAIMARGIGLEYRMKADN---KLPWS 116 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 GS+ + G G +L G+ F + + G + +PF +L L + Sbjct: 117 RLFGWGSVAVTLAHGFLLGGVLQGMDFD-----GLHHAGGAFDWFSPFTILVAATFLCLY 171 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 G WL KT G + +S++ + R + +L ++ + L+ + G Sbjct: 172 AFLGAAWLVWKTEGPLQHQSRIWSVRYGAATVGMLVLLAGYIALDGRLGFLVGRPGQGGL 231 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 + ++ FC ++ +I +G + +LM Sbjct: 232 G--------------------AFFILSLVVAVFCAAFSIRSIGKGGEVLPLVWCALMLVA 271 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 V G +L+P ++P LT+ + + L L IML V LP++ LY + + Sbjct: 272 VFVAFGGSLYPLIVPPR------LTIEQAAAPPLMLKIMLWTVGSMLPVIFLYNAYHFRL 325 Query: 361 MWGRMTTETLRR 372 + G++ E Sbjct: 326 VRGKVRLEDETH 337 >UniRef50_D2B3T8 Cytochrome oxidase subunit II n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B3T8_STRRD Length = 313 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 99/362 (27%), Positives = 158/362 (43%), Gaps = 53/362 (14%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L W+ +I + + + +GFD G+G L P ++RN+ ER+ V+ ++G W+GN+VWLI Sbjct: 3 LTTFWFAVIAFLWTGYFVLEGFDFGVGLLAPALSRNEAERKQVLGTIGPVWDGNEVWLIT 62 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 A GA+FAA+P YA S FY+ + LVL L R + ++RGK+ + R D G+++G Sbjct: 63 AVGAMFAAFPAWYAGLLSEFYLPVTLVLVGLIVRGIGLEWRGKVHHSSDRAWCDLGILVG 122 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S +P ++G F +LL A L+ G+ SL + +L G V Sbjct: 123 SALPAFLWGAVFADLLHDSAIA--------------------ALVGGVFSLSLCVLHGAV 162 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 ++ LKT G + R++ P+ + Sbjct: 163 FVTLKTSGPVRARARRTAMVT--------------------------SAVALPAAVVALS 196 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 G + ++ +P LW L + +RGR GW F + Sbjct: 197 NIPAAGTAVADWTAAPWLWACALTAMAALAAGIALTWRGRDGWAFAATASSIALGSIALF 256 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 L+P +P LT+ ++ S TL ++ I LI LP VL Y WSY+ R+ Sbjct: 257 GALWPAPLP-------GLTVAEAASGPYTLGMLTWIGLIALPFVLGYQAWSYWVFRKRLV 309 Query: 367 TE 368 E Sbjct: 310 AE 311 >UniRef50_C0XPN4 Cytochrome bd ubiquinol oxidase subunit II n=2 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XPN4_9CORY Length = 334 Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats. Identities = 97/365 (26%), Positives = 156/365 (42%), Gaps = 39/365 (10%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARN-----DDERRIVINSVGAHWEGNQ 61 L IW+L I V+ F + +GFD G+G LLP V + D R ++++G W+GN+ Sbjct: 3 LNTIWFLGIAVLFAGFFVLEGFDFGVGMLLPFVGGDTPEDNDRRRTAQVSTIGPLWDGNE 62 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 VWL+ A A+FAA+P YA SGF+ +L+L L R ++ ++R K A+WR+ D Sbjct: 63 VWLVTAAAAIFAAFPEWYATLLSGFFFLFVLILVGLIVRGVSLEWRVKGKTAQWRRRCDI 122 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 G GS +P ++G+ F NL+ GVP + F L P L GL + + Sbjct: 123 GTTFGSYLPAFLWGLIFTNLVAGVPLN-DKGRISSFTDGFVGLFNPLGLAGGLAFVLLFA 181 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 L G +++ LK + R++ R L Sbjct: 182 LHGAIFVALKAHEPLRGRARTLALRWLAAPTAIVSLLYVV-------------------- 221 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 W+ N + WI + + A + R G+ F ++ V Sbjct: 222 ------------WLQNVAGAQWTWIAVAVAALGIAAAIGATFANRDGFAFAATTIAIAAV 269 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 +LFP V+ S+ S ++ + S+ TL IM +I LP V++ WS++ Sbjct: 270 CVVLFGSLFPDVIRST-SAHPGWDIYSAASNPYTLRIMSWAGIIILPAVIVAQAWSFWSF 328 Query: 362 WGRMT 366 R+ Sbjct: 329 RQRVK 333 >UniRef50_D0WHD0 Cytochrome D ubiquinol oxidase, subunit II n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WHD0_9ACTN Length = 354 Score = 212 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 129/371 (34%), Positives = 192/371 (51%), Gaps = 20/371 (5%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 L IW++LI V++ + + DGFD+G G L P VA+ D+E+ ++ SVG W+GN+VW Sbjct: 1 MTVLGIIWFILIFVLIAGYFVLDGFDLGAGVLSPFVAKTDEEKALLRRSVGPVWDGNEVW 60 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L+ AGGALFAA+ YA FSGFY+A+ILVL L R ++ +Y W+K W+A Sbjct: 61 LLTAGGALFAAFAPAYATTFSGFYLAIILVLMGLIVRAISLEYSANETKPGWKKAWNALF 120 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 +GSL+P ++FG+A GN+ G+P L+TPF LLCGLL L M ILQ Sbjct: 121 FVGSLLPALLFGVAIGNVYAGIPMNANGDYVGI---PLLGLVTPFTLLCGLLGLSMFILQ 177 Query: 184 GGVWLQLKTV--GVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 G WL LK + +R+++A + A+L ++ F L + V I ++ + Sbjct: 178 GASWLALKAPEGSAMAVRARMARRTFAILAIVFFALVTVYALVIIKPEMVGGLSILRIAF 237 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 ++ VA+L +M E L +F C L L ASL V Sbjct: 238 AVL-FVAMLAATFMKATDEKASLVVFLASSVACFALV-----------ALLGASLFPNLV 285 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 + AG PF + ++ + +++T+ + S LTL+ ML I + LP VLLY Y Sbjct: 286 VAGAGD---PFNLFATAASGANITIETAASEDLTLAWMLGITCVGLPFVLLYHFLVYRTF 342 Query: 362 WGRMTTETLRR 372 G++T E Sbjct: 343 AGKLTKEDASE 353 >UniRef50_Q1LCN4 Cytochrome d ubiquinol oxidase, subunit II n=69 Tax=Bacteria RepID=Q1LCN4_RALME Length = 345 Score = 212 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 80/371 (21%), Positives = 150/371 (40%), Gaps = 55/371 (14%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 + ++ L+G+ +++++I DG+D+G+G LL +D ++ +I S+G W+ N+ WL+ Sbjct: 15 WMPLVFLALMGLSMLIYVILDGYDLGVGVLLRRA--DDVDKDTMIASIGPFWDANETWLV 72 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 L G L A+P + + Y+ + L+L L R +AFD+R K D + W+ Sbjct: 73 LGVGLLLTAFPMAHGVILTQLYLPVALMLAGLIIRGVAFDFRVKARDPH-KPWWNFAFYA 131 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GSL+ G+ G + G + L F + GL + L G Sbjct: 132 GSLLASFSQGLMLGLYITGFRYDLPNLL--------------FAVAVGLCLVAGYCLLGA 177 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 WL +KT G + LR+ +R+ L + + + Sbjct: 178 SWLIMKTTGNLQLRAIYWARRSLWLTAIGVAAISIVTPMVSERIFEKWFS---------- 227 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRP----------GWGFLMAS 295 +L PLL ++ + R R F+ + Sbjct: 228 ------------LPNIILLAPIPLLTMVLFVVIERLLRRMRDLHANGNDRWCWVPFVGTA 275 Query: 296 LMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTL 355 ++ +LFP+++ + +W + S+ +L ++L+ +I LP +L YT Sbjct: 276 VIFLLAFNGLAYSLFPYLVVDRID------IWQAASAPESLMVILIGAVIVLPTILGYTA 329 Query: 356 WSYYKMWGRMT 366 ++Y WG+ T Sbjct: 330 YAYRVFWGKAT 340 >UniRef50_A7I116 Cytochrome D ubiquinol oxidase, subunit II n=1 Tax=Campylobacter hominis ATCC BAA-381 RepID=A7I116_CAMHC Length = 368 Score = 210 bits (534), Expect = 9e-53, Method: Composition-based stats. Identities = 79/383 (20%), Positives = 156/383 (40%), Gaps = 22/383 (5%) Query: 3 DYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQV 62 YE L+ WW +I ++ +F+ F G LL +++ + +++NS+G WE Sbjct: 1 MYENLQIYWWFIISLLAGIFVFM-SFVQGGQMLL-FSFKDEKNKDMIVNSIGKKWELTFT 58 Query: 63 WLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAG 122 L++ GGA FAA+P Y+ +F G Y + +L + ++++YR K + +K ++ Sbjct: 59 TLVMFGGACFAAFPLFYSTSFGGAYWVWMAILFCFIIQAVSYEYRKKENNFLGQKCYEIF 118 Query: 123 LVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYL---GSFWQLLTPFPLLCGLLSLGM 179 ++I + + G+A G F+ + V + L PF L G + Sbjct: 119 MLINGFLGIFLIGVALSTFFSGSEFSLDTRNFVAWKNPLRGLEALFNPFNFLLGFTLVFA 178 Query: 180 VILQGGVWLQLKT-VGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANG 238 + G ++L + + + K+ A + ++ F+ W+ + V Sbjct: 179 ARVGGSMYLINHINEDYMRKKIRNFLKKDAAVFVIFFIAFLVWISLKDGFCVE------- 231 Query: 239 PSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVM--AIYRGRPGWGFLMASL 296 +V ++ NF ++ ++ L + A + G F + Sbjct: 232 -----NGVVVTKKFHYILNFFNHYFIFFGLIISVLTALFGIYKGAFTKSIQGIWFWGIGV 286 Query: 297 MQFGVIFTAGITLFPFV-MPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTL 355 + + + V PSS SSL++++++SS TL M I +F+P VL Y Sbjct: 287 IFAVTFLFFSLGMSGNVFYPSSADLNSSLSIYNASSSFYTLKTMAYIS-VFIPFVLAYIA 345 Query: 356 WSYYKMWGRMTTETLRRNENELY 378 + + M ++ N Y Sbjct: 346 YVWKNMDKTKMSKKELEKSNVAY 368 >UniRef50_C4XJ24 Putative cytochrome d ubiquinol oxidase subunit II n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XJ24_DESMR Length = 336 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 94/371 (25%), Positives = 162/371 (43%), Gaps = 35/371 (9%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M TL +W+ ++ ++L +++ +DGFD+G+G L LV +N+ R ++I +V W N Sbjct: 1 MEAPVTLADVWYWILALLLWLYVFTDGFDLGVGIL-CLVEQNEPRRSVMIETVEGVWHAN 59 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 Q WL++ GG LF A+P VY + Y+ +L +L R + +YR + D + W Sbjct: 60 QTWLVMLGGVLFGAFPLVYGTVLAALYLPAGFLLFALMTRGMGIEYRPETDDP---RFWS 116 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 GS+ V G+ G +L G+PF + YLG L PFP+L + L + Sbjct: 117 QVFGWGSVAVTVAHGLLLGAILQGMPFD-----GLRYLGGPLDWLAPFPILVAVTLLCLY 171 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 + WL LKT G + ++L R + C +L ++ + L+ + G Sbjct: 172 PMFAAAWLVLKTEGELQDAARLWGIRFGSAAVACLVLLVGYIALDGSLGHLVGRPGQGGL 231 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 +PL L+ V+ + A+ +G + + M Sbjct: 232 SPLFVLLLVVAVLNAALYF--------------------RALGKGWEHRPLMYCAAMLAF 271 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 V G+ LFP ++P +V+ S+ D L +ML ++ +P+VL Y + Y Sbjct: 272 VFLAFGLNLFPLIVPPAVTAASAAAPDD------MLRVMLYVIGGLMPVVLFYNAYQYRV 325 Query: 361 MWGRMTTETLR 371 G+ Sbjct: 326 FRGKAVPGEEA 336 >UniRef50_C7N0L6 Cytochrome d oxidase cyd, subunit II n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N0L6_SLAHD Length = 346 Score = 207 bits (526), Expect = 7e-52, Method: Composition-based stats. Identities = 118/364 (32%), Positives = 184/364 (50%), Gaps = 22/364 (6%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 IW++L+ V++ + I DGFD+G G L P +A+ND+E+ ++ ++G W+GN+VW Sbjct: 1 MSIWAIIWYVLVFVLIAGYFILDGFDLGAGVLSPFIAKNDEEKLTLMKAIGPVWDGNEVW 60 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L+ GGALFAA+ YA FSGFY+A+ILVL L R ++ ++ D WRK+W Sbjct: 61 LLTGGGALFAAFAPAYATTFSGFYLAIILVLMGLIIRAVSVEF--AAHDPAWRKLWFVLF 118 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 IGSL+P +++G+A GN+ G+P L+TPF LLCGLL L M ILQ Sbjct: 119 FIGSLLPALLYGVAVGNIYAGIPMDAAGNYIGV---PLIGLVTPFTLLCGLLGLTMCILQ 175 Query: 184 GGVWLQLKT--VGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 G WL +K G + R++ + A++ ++ F L + I + Sbjct: 176 GACWLSVKAPLEGELLARARGLRRPVAIVAIVLFALVTLYALFIIKPELAAGLGVLRILF 235 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 L+ + A++ E+ L IF + C L + L +S+ V Sbjct: 236 ALVVVAALVFVLLKAVQPEASDLTIFLVASVACFALVGL-----------LASSMFPTFV 284 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 + +G L PF+ + + +++T D+ S LTL M I + LP+VLLY Y Sbjct: 285 VSGSGDPLTPFM---TATEGAAITAADA-SGDLTLKWMFGITCVALPLVLLYHFLVYRTF 340 Query: 362 WGRM 365 GR+ Sbjct: 341 AGRL 344 >UniRef50_A9ASF7 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Burkholderia multivorans ATCC 17616 RepID=A9ASF7_BURM1 Length = 326 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 88/365 (24%), Positives = 153/365 (41%), Gaps = 43/365 (11%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 + + W+ + LV +++ DGFD+G+G L D R +I S+ W+GN WL+ Sbjct: 1 MMTWFWFAELAFALVAYLMLDGFDLGVGMLTAFAG---DARDEMIASIAPVWDGNGTWLV 57 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 +AG LF A+P VY+ Y + L+L L R +A ++R K A R R++WD L + Sbjct: 58 IAGTILFGAFPSVYSIVLPALYAPLCLMLAGLIMRGVAIEFRHKAA--RSRRIWDVLLFV 115 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GSL+ V+ G+ G G+P ++ Y G+ ++ +PF CG+ L G Sbjct: 116 GSLLASVMQGVCVGTYAHGLPVD-----QLRYAGNGFEWCSPFSFWCGVSLALGYALLGS 170 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 WL LK + A R A + L L ++ Sbjct: 171 GWLVLKGQRASQRIGRDAIARLAPITALFVL-------------------------SILA 205 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 + ++ P+L+ P+ L A R +L A+ ++ Sbjct: 206 STLLTETTVETRWLLHPLLFALPVAACATFLCAPAAARRD-GASAYLFAAGGCIAMVLML 264 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIF-LPIVLLYTLWSYYKMWGR 364 + PF++P LTL + + + + + M +F +P ++ YT +Y GR Sbjct: 265 AASYLPFIVP------FDLTLDAAAAPRASQTFMFWGAGLFVMPFIVFYTCVAYSVFRGR 318 Query: 365 MTTET 369 ++ + Sbjct: 319 VSNDH 323 >UniRef50_C5A672 Cytochrome bd ubiquinol oxidase, subunit II (CydB) n=2 Tax=Thermococcus RepID=C5A672_THEGJ Length = 331 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 102/362 (28%), Positives = 167/362 (46%), Gaps = 37/362 (10%) Query: 8 RFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILA 67 W+ +L +++ DGFD+GIG LL L+ +N +R I+IN++G W+GN+VW I Sbjct: 4 ATAWFYFSAFLLGMYLAFDGFDLGIGALLALI-KNQKDRDILINTIGPVWDGNEVWFITW 62 Query: 68 GGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGS 127 G LFA WP +YA FS FY+A+ L+ L FR + F++R K +++WD + S Sbjct: 63 GAGLFAMWPALYATLFSTFYLAIWLLAFLLIFRAVGFEFRNKN-----KELWDKLFALVS 117 Query: 128 LVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVW 187 + P+V G+ GNL++G+P + GS L P+PL+ GL L I G W Sbjct: 118 ALIPLVVGVVVGNLVMGIPIDANG-----FHGSLLTLFRPYPLIVGLFILFATIWHGANW 172 Query: 188 LQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLV 247 KT G + + + LL ++ LL + + Sbjct: 173 GVYKTTGKLQEELRGYAFKFWLLTVVLLLLTVIGMKIWAPLRFERLM------------- 219 Query: 248 AVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGI 307 +P+ L+ LL I +G F ++ L V+F Sbjct: 220 -------------TPLGLGLTLVILVAGLLDGHLIKKGEERLAFYISWLAFPLVVFLVYY 266 Query: 308 TLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTT 367 +++P+ + S+ P L++ D +S LTL +L + +I I++ YTL+ Y G++T Sbjct: 267 SMYPYWVISTTDPNFKLSIHDLAASPLTLKAVLGVSVILAVIIMAYTLYVYKMFGGKVTE 326 Query: 368 ET 369 Sbjct: 327 AE 328 >UniRef50_B2JUZ0 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Burkholderia RepID=B2JUZ0_BURP8 Length = 329 Score = 204 bits (518), Expect = 6e-51, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 151/371 (40%), Gaps = 46/371 (12%) Query: 3 DYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQV 62 + L ++W+ L+G++L ++++DGFD+G+G L L AR +R +++ S+G W+ N+ Sbjct: 5 THSLLAYVWFGLLGLMLAFYVVTDGFDLGVGILSLLRAR-RADRDVMVESIGHVWDANET 63 Query: 63 WLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAG 122 WL++ GG LF A+P YA Y ++ ++ L R A ++R + +WD Sbjct: 64 WLVVLGGGLFGAFPLAYAQLMQDLYSPVMALIAGLIMRGAAIEFRHSVEHG---PLWDKV 120 Query: 123 LVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVIL 182 IGSL+ + G+ G ++ G+ ++ F ++ + L Sbjct: 121 FGIGSLIAALAQGVVLGKVITGLV--------------PGEMNNVFVIVAATGVVAGYAL 166 Query: 183 QGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNP 242 G +L KTVG+I S+ +A+L + LL W D Sbjct: 167 LGATYLVKKTVGMIEQWSRRLALLSAMLTVAAALLLTTATWFFSDVGSERWSRPGV---- 222 Query: 243 LMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVI 302 +L + F ++++Y G F A + Sbjct: 223 ------------------MHLLIALGIAAAFAFAFIMVSLYLGSSRGPFRGAVTLFVVSF 264 Query: 303 FTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMW 362 ++LFP +P L + + S TL+ ML + + P+++ Y L+ YY Sbjct: 265 AGLAVSLFPDFVP------GKLGIVQAASDSHTLAFMLAGIGLIFPVMIGYNLYQYYIFR 318 Query: 363 GRMTTETLRRN 373 G++ Sbjct: 319 GKVAGGAHAGE 329 >UniRef50_D0L0A7 Cytochrome d ubiquinol oxidase, subunit II n=3 Tax=Gammaproteobacteria RepID=D0L0A7_HALNC Length = 348 Score = 203 bits (516), Expect = 1e-50, Method: Composition-based stats. Identities = 85/367 (23%), Positives = 154/367 (41%), Gaps = 38/367 (10%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 Y+ L FIWW+LIG+ +V+++I DG D+G G L + +ER ++ S+ W+ N+ W Sbjct: 11 YQWLTFIWWVLIGLFVVLYIILDGADLGSGI-YSLFNSDSEERGAIMASMAGTWDANETW 69 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L++AGGA+F +P Y + F + +++VL + R ++ ++ R R +WD G Sbjct: 70 LVVAGGAIFGTFPLAYGSLFHYLMIPLMVVLWGIIIRAVSLEFHHY--SKRSRALWDWGF 127 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 IGSLV G+ G L G + G LTPF +L G ++ L Sbjct: 128 GIGSLVTTFGAGVCLGAFLQGFQMTTGQVP--TFGGGALDFLTPFSILTGFTAVIAASLA 185 Query: 184 GGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPL 243 GG +L+ + + ++ + + + +W I Sbjct: 186 GGAYLRARFDRSTEIYAKALKWTDLMFYLALVAIMITVVWTFIQF--------------- 230 Query: 244 MKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTV---MAIYRGRPGWGFLMASLMQFG 300 +W + P W + + G T A R + + + F Sbjct: 231 ---------SWARDKWIGPYWWAYVIAGAIVLFATWSMRKASREQRDITAMIWLASIVFI 281 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 T TL+P+ +P + +T++D+ + +LS +L F+P++L Y + + Sbjct: 282 NFATMMATLYPWFVPGT------MTIYDAANPSNSLSAFSYAMLGFVPVMLSYNFYQAWV 335 Query: 361 MWGRMTT 367 R+ Sbjct: 336 FRARLHK 342 >UniRef50_A7ZG70 Cytochrome D ubiquinol oxidase, subunit II n=4 Tax=delta/epsilon subdivisions RepID=A7ZG70_CAMC1 Length = 374 Score = 202 bits (513), Expect = 3e-50, Method: Composition-based stats. Identities = 79/381 (20%), Positives = 156/381 (40%), Gaps = 14/381 (3%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 E L+ WW ++ ++ + + F G L+ + +++ ++ ++INS+G WE Sbjct: 4 LSLENLQIYWWFIVSLLGGLLVFMM-FVQGGQSLIFSLGKDELKKDMLINSIGRKWELTF 62 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 L++ GGA FAA+P YA +F G Y + +L + ++++YR K + + ++ Sbjct: 63 TTLVMFGGACFAAFPLFYATSFGGAYWVWLAILFCFIIQAVSYEYRKKPDNFLGARTYEI 122 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQ---LLTPFPLLCGLLSLG 178 L I + ++ G+A G F VE+ F L P+ L G+ Sbjct: 123 FLFINGSLGVILIGMAVSTFFSGSDFVLNEHNFVEWKTPFRGLEALSNPYLYLLGIAMFF 182 Query: 179 MVILQGGVWLQLK-TVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDAN 237 + + G ++L G ++ +L + FL W+ + + Sbjct: 183 LSRIGGCLYLMNNIADGEFIQNARKQLIINTVLFLPFFLGFLAWVLTKDGFAYNVNGVVS 242 Query: 238 GPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLM 297 + + +P A + V ++ + G F + + G G +A Sbjct: 243 LVAYKYAINLIEMPIAGILLLVGVLLVLVGIFQGAFTKSIRGIFA----YGVGVTLAVTA 298 Query: 298 QFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWS 357 F + G +P S SSLT+ +++SS TL +M + L +P+VL Y Sbjct: 299 LFLITGLNGTAFYP----SFSDLSSSLTIKNASSSHYTLGVMSYVSL-LVPVVLAYIFIV 353 Query: 358 YYKMWGRMTTETLRRNENELY 378 + + + T+ +N++ Y Sbjct: 354 WRAIDSKKITQDEIKNDHHAY 374 >UniRef50_B3QK51 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Rhodopseudomonas palustris RepID=B3QK51_RHOPT Length = 341 Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats. Identities = 72/367 (19%), Positives = 137/367 (37%), Gaps = 35/367 (9%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M + + +++ ++++ DG D+G+G L P R+ +R ++ ++ W+GN Sbjct: 3 MMANFDFAAFFAVSAAIVVGLYVVLDGVDLGVGILFPFAPRS-SDRDAMMTTLEPFWDGN 61 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 + WL+L G L AA+P +A FYV + L+L L R +AF++R + +W Sbjct: 62 ETWLVLGGMVLLAAFPLAFAILLPAFYVPLCLMLFGLVIRGIAFEFRSQRGSFEI--VWS 119 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 GS + G+ G + + G + L F + GL + Sbjct: 120 MTFAAGSFIAAFCEGVVLGAFVG----QSITVSNGAFAGGPFDWLGLFSIATGLGVVAAY 175 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 L G WL KT G + L LL W Sbjct: 176 GLLGACWLVWKTGGSTQNFGRELMLPTLLCAGGAILLVSVWTPFVKPQIAERWFV----- 230 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 + + L P++ + ++ + R ++ L+ Sbjct: 231 -----------------WPDMLWLAPLPIIAVLAGIGILLTRWSEREWSPLALSLLLFIT 273 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 + G +++P +P +T+W ++S T I+ ++I +PI+L Y + Y+ Sbjct: 274 SLAGLGASVWPEAIPGV------MTIWQASSMHRTQVIVAAAIVIIVPIILAYIGYGYWL 327 Query: 361 MWGRMTT 367 G+ Sbjct: 328 FRGKTKP 334 >UniRef50_B4RY64 Quinol oxidase, subunit II n=3 Tax=Gammaproteobacteria RepID=B4RY64_ALTMD Length = 335 Score = 200 bits (510), Expect = 6e-50, Method: Composition-based stats. Identities = 86/366 (23%), Positives = 143/366 (39%), Gaps = 39/366 (10%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 E L I+ L+G+ ++++ I DG+D+G+G L+P R + R +I S+G +W+ N+ Sbjct: 5 VSAEMLGNIYVGLLGLSVMLYAILDGYDLGVGVLIP--PRTEAFRDDMIASIGPYWDANE 62 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 WL+LA G L A+P ++ Y+ +L L R +AFD+R K+ + RK WD Sbjct: 63 TWLVLAIGLLLIAFPEAHSEFLQTLYLPATFMLLGLILRGVAFDFRAKVVQVKKRK-WDL 121 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVI 181 GSL+ + G G + G+ F LL Sbjct: 122 VFKYGSLLTTLAQGYMLGIYVTGLRTDI--------------WAQGFALLAAFGVTAAYA 167 Query: 182 LQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 G WL LKT G + ++ +R ++ + + D L A Sbjct: 168 FIGSCWLILKTEGELQQKAYYWARRGLGVLAVGIIAVSIANLTLHDDVRALWLSAP---- 223 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 W P+ L L + F +A L+ Sbjct: 224 ------------WGYVLFAIPLASFALLALCGVLLKKLPDANGKGEWLPFFIALLVFLLC 271 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 I+ +PF++P +T+ ++ S +L +LV V+I +PI+L YT Y Sbjct: 272 FSAFAISYYPFIIP------GQMTVSEALSDANSLRFLLVGVVIVVPIILAYTAMVYKIF 325 Query: 362 WGRMTT 367 G+ Sbjct: 326 SGKSEK 331 >UniRef50_UPI0001C321E0 cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C321E0 Length = 449 Score = 200 bits (508), Expect = 9e-50, Method: Composition-based stats. Identities = 90/401 (22%), Positives = 161/401 (40%), Gaps = 32/401 (7%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M D L+ +W + I V+ V++++ +GFD G+G LL V R+ +RR+ ++++G W N Sbjct: 1 MADLTLLQSVWLVAIAVLWVLYLVLEGFDFGVGMLLRRVRRDQLDRRVALHAIGPTWAAN 60 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 +VW+I+A +F A+P YAA SG Y+ + +VL S+ R + GK D RWR W+ Sbjct: 61 EVWVIVAVVGMFGAFPGWYAAWASGLYLPLAVVLLSIVARNAGIELLGKREDERWRLRWE 120 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 + + S V P +G+ + + G+ E +GS ++TP+ +L GL + + Sbjct: 121 RVIELSSTVAPFCWGLMWAATVHGLSLR-----GEEVVGSPLDVVTPYSVLGGLALVALC 175 Query: 181 ILQGGVWLQLKTVGVIHLR------------------------SQLATKRAALLVMLCFL 216 QG +L L+T G + R + A + ++ Sbjct: 176 RAQGAAFLMLRTDGGVRSRAAGELALAAPVAAVVGIGFLAWTGAASTPGAAGWIALVSCG 235 Query: 217 LAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPL 276 +A + + DA G G + Sbjct: 236 VALTLVALLARRGAGAGVDAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGAGGAGA 295 Query: 277 LTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSV---SPISSLTLWDSTSSQ 333 A G G I + F + P ++ + L L D + Sbjct: 296 GGAGAGAGGAGGRSGAAPFAAASAAIGLLVASWFCVLFPDAIAAAGGGAGLALTDVAAGS 355 Query: 334 LTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLRRNE 374 TL++M V+ + +P++L W+Y+ R+T + + Sbjct: 356 YTLTLMTVLAGLMVPLLLAAQAWTYWAFRHRITRADVGERQ 396 >UniRef50_Q03D44 Cytochrome bd-type quinol oxidase, fusion of subunit 1 and subunit 2 n=16 Tax=Bacteria RepID=Q03D44_LACC3 Length = 829 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 84/360 (23%), Positives = 146/360 (40%), Gaps = 34/360 (9%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M L+ I+ +I L++F + DG D G G V + +R+ ++ G W GN Sbjct: 491 MPSLSNLQVIFLGIISTELMLFFVLDGADFGAGMATFFVGDDLSKRQQIMKVTGPVWGGN 550 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 + W + A +FAA+P Y+A SG+Y + L+L L FR ++FDYR + + + WD Sbjct: 551 ETWAVTAFAVMFAAYPGWYSALTSGYYPLIFLMLFFLIFRGVSFDYRNQWHSRHYNRFWD 610 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMV 180 L IGSL+PP + GI F + + GVP S +LTPF +L G+L++ Sbjct: 611 WALFIGSLMPPFLLGIIFSSTVSGVPIR-----NGFVYASMGDILTPFSILGGILAVLFS 665 Query: 181 ILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 + G + K + +A KR ++ +L L F Sbjct: 666 LNVGLNRVIKKVTEPVATSLTVALKRTTWILYPALVLFAILLPFNTQFFTNRPVIVTLLL 725 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 L+ + V AI + R F ++ Sbjct: 726 ILLVAFLGVETW----------------------------AISQQRRRVAFWLSVGTMAS 757 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 I+T + +FP ++ +S+T +TS ++L + + +++ +Y+ Sbjct: 758 FIYTIFLGVFPTLIVGRT-AGTSITALTATSGPVSLLWTAWLFGFTIILMVGLQATAYHL 816 >UniRef50_A0Q8B4 Cytochrome bd-II terminal oxidase subunit II n=16 Tax=Francisella RepID=A0Q8B4_FRATN Length = 320 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 79/362 (21%), Positives = 150/362 (41%), Gaps = 47/362 (12%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW +I L++++I DGF +G+G L PL+ +D ++ I + + W+GNQ WL+ Sbjct: 3 LGLIWLAIIAFALLLYVILDGFALGMGILFPLL--DDHQKDIATSILLPTWDGNQTWLVF 60 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 A + +P +A F Y++ IL++ + R + F++R K + K WD I Sbjct: 61 ALACFYGMFPIAFAYIFPKIYLSAILLVVMILLRGICFEFRLKS-SQKGIKNWDKLFFIS 119 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S V + G G L++G P F + G+ + L G Sbjct: 120 SFVATFLQGYIVGELIVGFPHNSFYNFG-------------FSAVTGITLIFGYSLLGAT 166 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 L LKT G + +++ K +++ + L+ G + + Sbjct: 167 RLILKTEGELFTKAKQLAKICCIILAVLMLVIGGMTPLYVKLP----------------- 209 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 ++N + +L LL L+ + I + ++ + + Sbjct: 210 --------LDNLYKMAILGELFLLTIISFLVLIKVIEAKNHALPYWLSVAIFILTYISML 261 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 +FP+++P +T + +S TL L+ +I +P++LLYT ++YY G+ Sbjct: 262 TLIFPYIIP------YQITYTQAQASDTTLIFTLIPAIIMIPLLLLYTSYAYYIFRGKTK 315 Query: 367 TE 368 + Sbjct: 316 EK 317 >UniRef50_C9Q1E8 Cytochrome D ubiquinol oxidase subunit II n=7 Tax=Prevotella RepID=C9Q1E8_9BACT Length = 408 Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats. Identities = 84/381 (22%), Positives = 160/381 (41%), Gaps = 8/381 (2%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 + YE L+ WW L+ ++ + + F G L+ + + ++ERR+V+NS G WE Sbjct: 28 LMSYEFLQHYWWFLVSLLGALLVFLM-FVQGANTLIFTLGKTENERRLVVNSTGRKWEFT 86 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 L++ GG FA++P Y+ +F G Y +++L S + ++++++ K+ + + + Sbjct: 87 FTTLVVFGGGFFASFPLFYSTSFGGAYWLWMIILFSFVIQAVSYEFQNKLGNILGARTFQ 146 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQ-LLTPFPLLCGLLSLGM 179 L+I ++ PV+ G A G F L LL L Sbjct: 147 TFLIINGVLGPVLLGGAVATFFNGSNFIVDKGNITTMAQPVISRWANASHGLDALLDLWN 206 Query: 180 VILQGGVWLQLKTVGVIHLRSQLATKRAALLV-MLCFLLAGYWLWVGIDGFVLLAQDANG 238 V+L V+ + +G++++ + +A L +L + V L Sbjct: 207 VVLGVAVFFLARVLGLLYIINNVAHAPVVTRARKQLRLCTVVFLAFFLSFLVHLLLKDGY 266 Query: 239 PSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPL----LTVMAIYRGRPGWGFLMA 294 +P ++++ P +++N L I L+G L T+ R W + Sbjct: 267 AYDPQTGIISMQPLKYLHNLTTMWYLAIVLLVGVASLLYGIVRTLRDANFNRGIWFGGVG 326 Query: 295 SLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYT 354 ++ V+ PS+ SSLT+ +S+ S+ TL+ M V+ L +P VL Y Sbjct: 327 VVLVVLVLLLCAGWNNTAYYPSNTDLQSSLTIANSSGSKFTLTAMSVVSL-LIPFVLAYI 385 Query: 355 LWSYYKMWGRMTTETLRRNEN 375 ++ + + TE N Sbjct: 386 FVAWRAIDRKPLTEEEIMNGE 406 >UniRef50_A6Q1A5 Cytochrome bd oxidase subunit II n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q1A5_NITSB Length = 372 Score = 194 bits (493), Expect = 5e-48, Method: Composition-based stats. Identities = 86/383 (22%), Positives = 165/383 (43%), Gaps = 21/383 (5%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 TL+ WW ++ ++ +F+ F G L L N++++ +++N++G WE Sbjct: 5 MSTYTLQEYWWFIVSLLGGLFLFLT-FVQGGQTKLGLAG-NEEQKDLIVNALGRKWELTF 62 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 L+L GGALFAA+P YA +F G Y + +L S + +A++YR K + +K+++ Sbjct: 63 TTLVLFGGALFAAFPLFYAVSFGGAYGLWMAILFSFIIQAVAYEYRKKPNNFFGQKVYEL 122 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLG---SFWQLLTPFPLLCGLLSLG 178 L + V + G+A +L G F + +LG L PF +L GL+ + Sbjct: 123 FLFLNGTVGIFLIGVALASLFTGAAFKLDDMKHMTWLGSMRGLEALGNPFNILFGLMMVF 182 Query: 179 MVILQGGVWLQLKTVG-VIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDAN 237 + L ++ + +++ A K + ++ FL W+ Sbjct: 183 LARLNANLYFMFILDDPELVEKAKKAIKTDFAIFLVLFLAVAGWILSMSG---------- 232 Query: 238 GPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLM 297 V+ ++NNF+E P + ++G L V+ +G + ++ + Sbjct: 233 --VGYEQNKFFVVAHKYLNNFLEMPFVLGAFVVGVGLLLGAVVMALKGVKKAFWFSSTAI 290 Query: 298 QFGVIFTAGITLF--PFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTL 355 + + + PS SSLT+ +S+ S++TL M + L +P V+ Y Sbjct: 291 TLVGLSLLLVLGYNHTAYYPSIADIGSSLTIENSSGSRVTLITMSYVSL-MVPFVVGYIA 349 Query: 356 WSYYKMWGRMTTETLRRNENELY 378 + + M + +E N+ Y Sbjct: 350 YVWRLMDSKPLSEDEVENDVMSY 372 >UniRef50_C6NVA4 Cytochrome d ubiquinol oxidase, subunit II n=4 Tax=Gammaproteobacteria RepID=C6NVA4_9GAMM Length = 362 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 77/385 (20%), Positives = 152/385 (39%), Gaps = 47/385 (12%) Query: 4 YETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVW 63 + +L WW+L+G+ V++++ DG D+G G L+ N+++R V+ S+ W+ N+ W Sbjct: 11 HSSLGTFWWILLGLFFVIYIVLDGADLGAGV-FSLMLENENDRAAVMASMAGTWDANETW 69 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 L++AGG +F A+P VY A F+ + ++ L + R +AF++ + + W Sbjct: 70 LVVAGGVIFGAFPLVYGATFNYLMIPLMFALWGIISRAVAFEF--HVHAKGSKAFWGKMF 127 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPF------------AFTPQLRVEYLGSFWQLLTPFPLL 171 +GSLV G+A G LLG P + G+ L+PF + Sbjct: 128 GLGSLVAAFFAGVALGATLLGFPMSKGNAQGIQVANDPFANTVPHFSGNALSFLSPFSIW 187 Query: 172 CGLLSLGMVILQGGVWLQ--LKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGF 229 G+ ++ L G ++L K I+ ++ + L ++ ++ W + + Sbjct: 188 TGIAAVIAGGLAGTLYLCARFKQDDPIYQKAYAWATTFSYLALVAVVITLVWSYAIMPDA 247 Query: 230 VLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGW 289 I L F +MA R Sbjct: 248 AKWTGSGWFG------------------------WLILLLAILFSAFRMMMAHAAHRDFP 283 Query: 290 GFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPI 349 L + + T FP+++P + T+ + L+I+ + + F+P+ Sbjct: 284 ALLWCGAIVVLMWGGMWATNFPYIVPQT------WTIAAGANPANDLAILTLFMTGFVPV 337 Query: 350 VLLYTLWSYYKMWGRMTTETLRRNE 374 +++Y + + R+T + Sbjct: 338 MIMYNAYQIWVFRHRLTHLAGYESH 362 >UniRef50_B2RJL6 Cytochrome d ubiquinol oxidase subunit II n=56 Tax=Bacteria RepID=B2RJL6_PORG3 Length = 387 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 84/398 (21%), Positives = 161/398 (40%), Gaps = 32/398 (8%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQ 61 +Y L+ WW L+ ++ + + F G L + +++ +++++NS G WE Sbjct: 1 MEYALLQHYWWFLVSLLGALLVFLL-FVQGGQSFLFSLGKDELTQKMMVNSTGRKWEFTF 59 Query: 62 VWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA 121 L+ GGALFA++P Y+ +F G Y +L+L + ++++Y+ K + RK + Sbjct: 60 TTLVTFGGALFASFPLFYSTSFGGAYWVWMLILFCFIIQAVSYEYQSKHGNVWGRKTYQI 119 Query: 122 GLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLG-----------------SFWQL 164 L I ++ P++ G A G F + G + Sbjct: 120 LLFINGVLAPLLLGTAVSTFFTGSSFVVNKMAMFDLSGGNQIVSAWQPFNGWQLRGLEAV 179 Query: 165 LTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWV 224 L + ++ GL + + ++ + A L F LA + Sbjct: 180 LNLWNVVLGLAVFFLARVSALLYFINNIDDESLYAAAKRRLWANTAAFLIFFLAYIAFLL 239 Query: 225 GIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPL----LTVM 280 +GF + NP+ K V + P ++ NF++ P + LLG L LT++ Sbjct: 240 TTEGFAV---------NPVSKEVYMEPYKYLYNFLDMPAVLAVFLLGVILVLGGIGLTLL 290 Query: 281 AIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIML 340 R W +++ + PS+ SSLT+ +++SS TL +M Sbjct: 291 RKGFKRGIWLHGTGTVLTVLALLLVAGWNDTSWYPSTYDLQSSLTIENASSSHFTLKVMS 350 Query: 341 VIVLIFLPIVLLYTLWSYYKMWGRMTTETLRRNENELY 378 + I +P VL Y +++ + R T+ ++ +Y Sbjct: 351 YVS-ILIPFVLAYIFYAWRALDIRKITKKEMEQDDHVY 387 >UniRef50_B9Z1X7 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z1X7_9NEIS Length = 336 Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats. Identities = 87/359 (24%), Positives = 142/359 (39%), Gaps = 35/359 (9%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 L ++ L+ + L+ ++I DG+D+G+G LLPL A+ ER +I S+G W+ N+ WL+ Sbjct: 6 WLPVVFAGLMAISLLAYVILDGYDLGVGILLPLGAK--AERDTMIASIGPFWDANETWLV 63 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 L G L A+P + Y+ + L+L L R +AFD+R K D + W+A Sbjct: 64 LGVGLLLVAFPLAHGIILGELYLPVALMLLGLILRGVAFDFRVKARDPH-QPWWNAAFAA 122 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GSL+ + G+ G L G F LL G+ L G Sbjct: 123 GSLLAALSQGVMLGRYLTGFAPGAAAWG--------------FALLAGVGLAAAYALLGA 168 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 WL +KT G + R+ +RA L L + Sbjct: 169 GWLIMKTRGALQARAIGWARRALYGTGLAVLAVSIATPLASSHIAAKWF----------- 217 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 V + + S L++ L A F + + Sbjct: 218 -VLPDFLLLLPLPLGSLALFVLLALSLPRLARRQAAGNDTLCWLPFAATVGIVLLSFWGL 276 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 ++FP ++ LT+W + SS LS++L + LP ++ YT+++Y WG+ Sbjct: 277 AYSVFPDIVIGR------LTIWQAASSPEALSVILWGAAVVLPTIVGYTVYAYRVFWGK 329 >UniRef50_D2S1W8 Cytochrome d ubiquinol oxidase, subunit II n=2 Tax=Halobacteriaceae RepID=D2S1W8_9EURY Length = 333 Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats. Identities = 89/363 (24%), Positives = 153/363 (42%), Gaps = 48/363 (13%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L IW+ L+ IL +F+ DGFD G+G L + ER ++ ++ W+GN+VWL++ Sbjct: 17 LADIWFGLVFFILGMFLFLDGFDFGVGILFA-TRDDKHEREQLLAAITPFWDGNEVWLVV 75 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 GGALFAA+P VYA FS Y+ M +L +L R LA + + D W+K W ++G Sbjct: 76 FGGALFAAFPAVYANLFSRHYLLMFAILGALILRGLAPEMYEQREDEPWQKWWGRAFIVG 135 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S P GI N LLG L+T ++ GL+ + + ++ G Sbjct: 136 SFTAPFFLGIFIANWLLGTT----------------ALITLPGIVVGLMLVALTVVDGVA 179 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 +L+LKT + + RA +L ++ +L +++ ++ L Sbjct: 180 FLRLKTRNELRDDVRTDGSRALVLYLILVVLTLGVVYITAPELRSALLSPLVVCLVVVNL 239 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 V A +A R F+ + + F ++ Sbjct: 240 VLTGIYA--------------------------VATSSNRYYEAFVANAGLVFTLVSIVA 273 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 ++P + + LT+ ++ S L L+IM + + LP++ LY Y G + Sbjct: 274 SLMYPHI-----DRVEGLTVEEAIVSTLPLNIMSIGAALLLPLIFLYFGVLYSVFSGPIK 328 Query: 367 TET 369 + Sbjct: 329 ADE 331 >UniRef50_A6LFA4 Cytochrome D ubiquinol oxidase subunit II n=13 Tax=Bacteria RepID=A6LFA4_PARD8 Length = 383 Score = 185 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 76/381 (19%), Positives = 152/381 (39%), Gaps = 9/381 (2%) Query: 3 DYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQV 62 Y L+ WW L+ ++ + + F G LL + + + ++++++NS G WE Sbjct: 4 TYILLQHYWWFLVSLLGALLVFLL-FVQGGQSLLFTIGKTEIQQKMLLNSTGRKWEFTFT 62 Query: 63 WLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAG 122 L+ GGA FA++P Y+ +F G Y +L+L + ++++Y+ K + +K + Sbjct: 63 TLVTFGGAFFASFPLFYSTSFGGAYWVWMLILLCFVIQAVSYEYQAKKGNLLGKKTYQVF 122 Query: 123 LVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQ-LLTPFPLLCGLLSLGMVI 181 L+I + P++ G A G F + + P+ L L + Sbjct: 123 LMINGIAGPILLGTAVATFFNGAEFIVNKEQLTDVAMPVISTWANPWHGLEAALVFWNLC 182 Query: 182 LQGGVWLQLKTVGVIHLRSQ-LATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 L V+ + + +++ + + A +L + + L Sbjct: 183 LGLAVFFLARALALLYFINNIDDPEIVAKSRKQLIPETILFLVFFLTFLIRLLLVDGFAV 242 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTV---MAIYRGRPGWGFLMASLM 297 NP V + P + N +E P++ L+G L + + R G F A + Sbjct: 243 NPDTGEVFMQPYKYFMNLIEMPIVLAVLLIGVVGVLFGIGKTIFSKTWRKGIWFAGAGTV 302 Query: 298 QFGVIFTAGITL-FPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLW 356 + PS SSLT+ +S SS TL +M + I +P VL Y + Sbjct: 303 LTVLALLLCAGWNNTAYYPSLADLQSSLTIQNSCSSPFTLKVMSYVS-ILVPFVLAYIFY 361 Query: 357 SYYKMW-GRMTTETLRRNENE 376 ++ + ++ ++ ++ + Sbjct: 362 AWRALDLHKINSKEMQEGGHT 382 >UniRef50_C0G2G6 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Natrialba magadii ATCC 43099 RepID=C0G2G6_NATMA Length = 331 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 92/365 (25%), Positives = 157/365 (43%), Gaps = 49/365 (13%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 E+L +W+ L+ L V+++ DGFD G+G L ++ +R +++ + G W+ N+VWL Sbjct: 13 ESLPEVWFGLVVFALGVYLLLDGFDFGLGIL--FAEADESDREVLLAAFGPLWKANEVWL 70 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 +L G LFA +P VYA S Y+ + +L +L R L R + D W + WDA V Sbjct: 71 VLFGTVLFAGFPAVYANILSRHYLLVFAILLALSLRGLGSKLREERDDEEWVRFWDACFV 130 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQG 184 GS+ P + G+ + +LG A PL+ G+ + + I+ G Sbjct: 131 AGSIASPFLLGVFVASWVLGEASALAIA----------------PLVVGVTVVALSIVLG 174 Query: 185 GVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLM 244 +L +KT G + ++A + + F+L L+V G + A+ Sbjct: 175 AAFLGVKTRGELRDHVTRRGRQATGIYVGLFVLTAITLFVQYPGLHTVLLSAS------- 227 Query: 245 KLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFT 304 + + TV A +R R FL A+ + + Sbjct: 228 -------------------TAAIVVATVVFSIATVFAAFRERYHAAFLGAAGLAAAFVVF 268 Query: 305 AGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 G L+P + P + L++ D+ S L L++ + IF+PI++ Y L+ Y G Sbjct: 269 VGTLLYPAI-----DPAAGLSVRDAVVSPLPLNMTTIFAAIFMPIIVGYFLFLYSLFSGP 323 Query: 365 MTTET 369 T E Sbjct: 324 ATPEQ 328 >UniRef50_A6W8I8 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W8I8_KINRD Length = 346 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 94/373 (25%), Positives = 159/373 (42%), Gaps = 46/373 (12%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M + L +W+ + + V+F + +GFD G+G L PL+ R D ER + +VG W+GN Sbjct: 1 MTSWVDLPVLWFGVTVLAWVLFFVLEGFDFGVGFLGPLLGRTDAERGAALRTVGPVWDGN 60 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 +VWL+ A G FAA+P YAA SG Y+ MI +L L R +A ++RGK A W + D Sbjct: 61 EVWLVAAIGVTFAAFPDWYAALLSGLYLPMIALLLLLAVRGVAIEFRGKHDSASWHRRCD 120 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLR-VEYLGSFWQLLTPFPLLCGLLSLGM 179 A L SL+ +G G L+ G+ ++ S +L P+ +L G + + Sbjct: 121 AFLATSSLLLAGTWGAVLGALVTGLALDPGGEVHGGGLSRSLAPILGPWAVLGGFAGVLL 180 Query: 180 VILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGP 239 + G +L L+T G + R++ A +++ L Sbjct: 181 TTVHGATFLALRTTGPVRARARRLAVATAPALVVIALALFI------------------- 221 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299 L +A +RG F S+ Sbjct: 222 ----------------------AAGHAAVAAAAALLALAAVAAWRGAEALAFAATSVAVA 259 Query: 300 GVIFTAGITLFPF----VMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTL 355 G + ++PS++S + +TL + +S+ L ++ V ++ LP V++Y + Sbjct: 260 GSVVAVFTAHLADGSWVLLPSTLSSANDVTLRAAAASEGALQLITVAGVVVLPAVVVYQV 319 Query: 356 WSYYKMWGRMTTE 368 WSY+ R++T Sbjct: 320 WSYWVFRQRVSTG 332 >UniRef50_B9L7C1 Cytochrome bd oxidase subunit II n=2 Tax=Nautiliaceae RepID=B9L7C1_NAUPA Length = 398 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 86/393 (21%), Positives = 169/393 (43%), Gaps = 27/393 (6%) Query: 3 DYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQV 62 + L+F WW+++ V+ +F+ F G L VA+++ E R ++NS+G WE Sbjct: 11 THFYLQFYWWIIVAVLGGLFLFMT-FVQGGQTLFH-VAKDEIEERGILNSLGRKWELTFT 68 Query: 63 WLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAG 122 L++ GGAL+AA+P Y+ +F G Y +L+L + + ++++Y + + + + Sbjct: 69 TLVMFGGALYAAFPLFYSVSFGGAYWVWMLILFAFVLQAVSYEYMNRTGNLIGKGAYKFF 128 Query: 123 LVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLT--------------PF 168 L +V V+ G A G G F + P R+ G+ F Sbjct: 129 LYFNGVVGIVLIGAAVGTFFTGSNFTYDPATRILEWGTAKDGFNLRGLEAAIDFKHGAWF 188 Query: 169 PLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDG 228 L G+L + + G +WL R +V CF++ L + + G Sbjct: 189 NLAMGVLVFAVARILGALWLINDLD---EKDFADVVARLRAVVKRCFVVLLVALVIVLYG 245 Query: 229 FVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVM----AIYR 284 + L A +P V+++ G ++ N + + + L + + Sbjct: 246 LITLKGYAYDIHDP-KGTVSLVAGKYLQNLLAFGAIQLIVFLVGVVLFVLGVFQSGFGSS 304 Query: 285 GRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVL 344 + W + +++ ++FT PS SSLT+ +++ S+ TL +M + Sbjct: 305 RKGIWAAGLGTVLIGIIVFTLAGLNGTAFYPSYADLQSSLTIQNASGSKYTLMVMAWVS- 363 Query: 345 IFLPIVLLYTLWSYYKMW--GRMTTETLRRNEN 375 + +P VL Y ++ +Y+M G +T E + +++ Sbjct: 364 VAVPFVLGYIIYVWYQMKKQGPITKEEILTDDH 396 >UniRef50_D2B3F0 Cytochrome d ubiquinol oxidase subunit II n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B3F0_STRRD Length = 332 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 97/348 (27%), Positives = 152/348 (43%), Gaps = 33/348 (9%) Query: 20 VVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVY 79 + + GFD G LLPL R++ RR V+ ++G ++ GN+VWL+ A G LF A+P + Sbjct: 14 TGYYVLAGFDYGAQLLLPLAGRDEGGRRRVLAALGPYFFGNEVWLVAAAGVLFGAFPLLE 73 Query: 80 AAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFG 139 SG Y+ ++L+L L A RG+ A R++WD +V G +P + G G Sbjct: 74 GTLLSGLYLLVVLLLLGLVAGKAAVQLRGRSQSAAARRVWDVLIVAGGAIPAFLMGTLIG 133 Query: 140 NLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLR 199 LL GVP ++ S +L PF LL G+ + ++I GG +L L+T G + R Sbjct: 134 LLLAGVPLRGDHG----FVLSPGDVLHPFVLLAGVTGVLLLIGHGGAFLSLRTTGEVASR 189 Query: 200 SQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFV 259 + A + W V A P LVA Sbjct: 190 ADSAAR-------------SALTWAAAAVVVTFAAGLALGVRPPNPLVAT---------- 226 Query: 260 ESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVS 319 +L PL A+ GRPG F + + AG++ FP+++ SS Sbjct: 227 ------AATVLLAVLPLAGRRALRYGRPGRAFTATAAAVALPVPLAGLSTFPYMLVSSAD 280 Query: 320 PISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTT 367 P SLT + + TL + ++ LP++L Y + ++ GR+ Sbjct: 281 PRHSLTFTEVAADAATLETLTAFGVVLLPVMLGYQAFGWWAFRGRVEA 328 >UniRef50_UPI000038268B COG1294: Cytochrome bd-type quinol oxidase, subunit 2 n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI000038268B Length = 226 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 58/188 (30%), Positives = 91/188 (48%), Gaps = 8/188 (4%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 L +W L+ + + ++++ DGFD+G+G L AR + R ++ SV W+GN+ WL+ Sbjct: 14 WLPLVWAGLLALAVAMYVVIDGFDLGVGILF-TAARPGNWRDRMMLSVAPIWDGNETWLV 72 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 L GG LFA + YA Y+ +IL+L +L FR +AF++R K R R +WD Sbjct: 73 LGGGGLFAVFSVAYAILLPALYLPLILMLIALIFRGVAFEFRFKAE--RSRAVWDNAFHY 130 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GSL G+ G + G + LTPF ++ G+ + L Sbjct: 131 GSLTATFAQGMVLGAFVQSF-----QTEGRSLSGGTLEWLTPFSVMTGIGLVSGYRLLEA 185 Query: 186 VWLQLKTV 193 W +KT Sbjct: 186 NWCVMKTP 193 >UniRef50_C4DN93 Cytochrome d oxidase cyd, subunit II n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DN93_9ACTO Length = 338 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 76/348 (21%), Positives = 135/348 (38%), Gaps = 31/348 (8%) Query: 22 FMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAA 81 + + G D G L + ++ RR + ++G + GN+VWL+ G LF A+P + Sbjct: 18 YFVLGGLDYGAQVLRLWLGGDESARRSTLGALGPFFFGNEVWLVGFAGVLFGAFPFLEGK 77 Query: 82 AFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNL 141 SG Y + +L L A RG+ R R++WD G LVP +G+ L Sbjct: 78 LLSGMYPLFLAILIGLVVGKTAVQLRGRADTVRGRRVWDVLAFAGGLVPAWSWGMLVALL 137 Query: 142 LLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQ 201 L GVP + + QL PF L CG S + + G +L + G ++ Sbjct: 138 LRGVPIGAD----GHFTLTGAQLGEPFVLACGAASTALFVTHGAAFLAARVRGAAAGAAR 193 Query: 202 LATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVES 261 R ++ ++ L AG + A + F Sbjct: 194 ALLPRLGVVTVVASLGAGG---------------------------IGVASAVDDGFAAP 226 Query: 262 PVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPI 321 L + ++A RG + G+ +P ++ S+VS Sbjct: 227 AAAVAVGALLPIAVVAAMVASRRGWAKTAVTATGVAALVPALLPGVAHYPRLLVSTVSER 286 Query: 322 SSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTET 369 S+T+ + + TL ++ ++ +P++LLY WS++ R+ + + Sbjct: 287 YSVTVSHAAADVETLKLLSAFGIVVVPVILLYQGWSWWAFRERVDSGS 334 >UniRef50_C7NNR2 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Halobacteriaceae RepID=C7NNR2_HALUD Length = 338 Score = 171 bits (433), Expect = 5e-41, Method: Composition-based stats. Identities = 79/364 (21%), Positives = 144/364 (39%), Gaps = 44/364 (12%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 ++L IW+ +I L ++++ DGFD GIG L +D +R ++ + G W+ N+VWL Sbjct: 15 DSLPEIWFGVIMFALAMYIVLDGFDFGIGMLYA-TREDDHDRETLLAAFGPIWDANEVWL 73 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 I G L AA+P VY+ + Y+ + + +L FR + + R + D W++ D V Sbjct: 74 IAFGTMLLAAFPDVYSRLLADNYLIALGFVLALLFRGVGPELREQREDESWQRACDWSFV 133 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQG 184 GS + P +FG+ G+ + V P +L G+ + + + G Sbjct: 134 GGSALAPFLFGVLAGSWVFSVGAVSLP-----------------AILTGVGLVAVSAVTG 176 Query: 185 GVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLM 244 +L KT + + +L + +L L + S P + Sbjct: 177 AAFLAAKTGPALAGEMRD----LGILATVAYLAGVVVLLAVVIVTDAGGTAGTILSIPGI 232 Query: 245 KLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFT 304 +V L L ++ R + A + + Sbjct: 233 AIVG---------------------LSVVAGLGGIVLALRDSYRAWLVSALALPTLLSAL 271 Query: 305 AGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 + L+P + P++ S + LT+ + S L L++ V+ L +VL Y + Y G Sbjct: 272 VALLLYPAIYPATAS-GAELTVETAVVSPLALNLTTVLGFPVLVVVLWYFKFLYGVFSGP 330 Query: 365 MTTE 368 + E Sbjct: 331 IEAE 334 >UniRef50_C6DYH0 Cytochrome bd ubiquinol oxidase subunit II n=3 Tax=Geobacter RepID=C6DYH0_GEOSM Length = 349 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 65/360 (18%), Positives = 126/360 (35%), Gaps = 39/360 (10%) Query: 12 WLLIGVILVVFMISDGFDMGIGCL--LPLVARNDDERRIVINSVGAHWEGNQVWLILAGG 69 +++ L+++ + G D G G L R ++R + N++G WE N VWLI Sbjct: 9 AMVLVAGLLMYALFGGADFGGGIWTALAFGPRAREQREALFNAIGPVWETNHVWLIFVIV 68 Query: 70 ALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDA-GLVIGSL 128 LF A+P + F ++L L + FR AF +R + + A I S+ Sbjct: 69 TLFTAFPAGFGNLFIVLMTPLVLALVGINFRGAAFAFRHFGRELKKETPVSARVFEIASV 128 Query: 129 VPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWL 188 + P G+A G ++ L F LL G++ + + +++ Sbjct: 129 LTPFTLGLAVSATAAGRIVIAGRMPTEQFS----DWLNSFTLLGGVVGMAICAYLAPIYM 184 Query: 189 QLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVA 248 ++ G + + + A L + + L F Sbjct: 185 TVRVTGELREDFRKESLAAGLALGILTSLMIPLAHYQAPLFAERLF-------------- 230 Query: 249 VLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGIT 308 + +F +L ++T ++ R W L+A + Sbjct: 231 ------------NSWPMLFVMLAILAGVVTESLLWLRRYFWAQLIAGATIVFTMAGFVAA 278 Query: 309 LFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTE 368 L P ++ LTL + + TL L ++ I I++ ++ Y+ G + + Sbjct: 279 LNPDILI------GQLTLRAAAAPHPTLVAFLAVLPIGALILVPSLVYLYWTFRGEPSAD 332 >UniRef50_C6XT47 Cytochrome bd ubiquinol oxidase subunit II n=7 Tax=Bacteroidetes RepID=C6XT47_PEDHD Length = 339 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 65/366 (17%), Positives = 134/366 (36%), Gaps = 37/366 (10%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDD--ERRIVINSVGAHWEG 59 Y + F+W ++ ++++ G D G G + + A+ + R+ + ++G WE Sbjct: 1 MIYVVIVFLWTAIL-----LYILLGGADFGAGIIELMTAKTNKAKTRKTMYKAIGPIWEA 55 Query: 60 NQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIA-DARWRKM 118 N +WLI+A LF +P++Y ++ ++ +L + R AF +R A +K+ Sbjct: 56 NHMWLIIAIVILFVGFPKIYTTISVYLHIPLVCMLLGIIARGTAFVFRNYDAVKDDMQKI 115 Query: 119 WDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLG 178 + V SL+ P GI + + G P + L F + G+ ++ Sbjct: 116 YTPIFVYSSLITPFFLGIIAASSVSG---QIDPSANNFLSAYIFSWLNWFSVAVGIFTVS 172 Query: 179 MVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANG 238 + +++ +T R K + ++ F A ++ +G L + Sbjct: 173 ICGFLATIFIIGQTDNDG-DREHFVGKARRTIFIVMFCGALVFIAAYSEGIPLASWIFGD 231 Query: 239 PSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQ 298 I + L+ A+ + +P L+A Sbjct: 232 TPG-----------------------LIAIIAASISLLVMFYALKKDKPILLRLLAGFQV 268 Query: 299 FGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSY 358 ++F A T FP ++ SL + T++ + +LI +L ++ Sbjct: 269 TMILFAATYTHFPDIVLLKNGENLSLLTHQGQA--RTIASLGYALLIGSIFILPALVYLI 326 Query: 359 YKMWGR 364 Y R Sbjct: 327 YIFQKR 332 >UniRef50_C6VWT6 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VWT6_DYAFD Length = 341 Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats. Identities = 60/367 (16%), Positives = 133/367 (36%), Gaps = 39/367 (10%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDE--RRIVINSVGAHWEG 59 Y + ++W ++ ++++ G D G G + ++ + + R+ + +++G WE Sbjct: 1 MLYIVITYLWASIL-----LYLLLGGADFGAGIIELFTSQKNKQVTRKTLYSAIGPIWEA 55 Query: 60 NQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIA-DARWRKM 118 N +WLI+A LF +P +Y+ ++ + ++L + R AF +R A + + Sbjct: 56 NHMWLIIAIVILFVGFPVIYSTMSVNLHIPLTVMLIGIIARGTAFTFRHYDAVVDDMQHL 115 Query: 119 WDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLG 178 ++ + S + P+ GI G+ + G P R + L F + GL ++ Sbjct: 116 YNTIFAVSSFITPLFLGIIAGSAVSG---HIDPSARSFADAYIFSWLHWFAITVGLFTVS 172 Query: 179 MVILQGGVWLQLKTVGV-IHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDAN 237 + V+L +T LR + + ++C L W + Sbjct: 173 ICGFLASVYLIGETKVEHERLRFAHKAQFFNIAAVVCGALVFVAAWFEHIPLIDW----- 227 Query: 238 GPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLM 297 + + I L + +Y+G+ +A Sbjct: 228 --------------------VFGNWIGRIAILSATLSLIWMWTLLYQGKIRLLRPLAGFQ 267 Query: 298 QFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWS 357 ++ T FP ++ SLT + + T+ + +L+ ++L + Sbjct: 268 VTMILLTTTFRHFPNIVVLKGGGYLSLT--EHAGHEKTVEALGWALLLGSILILPALFYL 325 Query: 358 YYKMWGR 364 Y + Sbjct: 326 IYSFQKK 332 >UniRef50_D1CB62 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CB62_THET1 Length = 337 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 67/362 (18%), Positives = 138/362 (38%), Gaps = 40/362 (11%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGC--LLPLVARNDDERRIVINSVGAHWEGNQVWL 64 L + L+ + L+ + + G D G G LL + ++R+ + N++G WE N VWL Sbjct: 4 LNEVPALIGVLALMAYAVLAGADFGAGVWDLLAWGPKAKEQRKTISNAIGPVWEANHVWL 63 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIAD-ARWRKMWDAGL 123 I LF +PR ++A +V L L + R +F +R + +R+ W + Sbjct: 64 IFIIVLLFTCYPRAFSALSISLFVPFHLALLGIVLRGASFVFRAYAPERSRFASFWGSVF 123 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 SL P V G+ G + G ++ + +P ++ GL++L Sbjct: 124 GSASLFTPFVLGMCMGAISAGSIRQMGSKVTSDVSV----WTSPVSIVMGLMALFEAAYL 179 Query: 184 GGVWLQLKTVG-VIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNP 242 V+L L++ + ++ + + L A Sbjct: 180 AAVYLTLESPDKDLQESFRIRALISGFIFAAVSLGAL----------------------- 216 Query: 243 LMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVI 302 V + + + +P + LG L++ A++ + + A+ ++ Sbjct: 217 ---PVFSVYAPHLWERLLAPSVVPIVFLGIIVGLVSAAALFFRKYWIARISAAGQVVILL 273 Query: 303 FTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMW 362 I P+++ T+ +S++S+ TL ++ V I + I++ + + Sbjct: 274 LGWAIAQRPYIIYPE------FTVANSSASEATLRFVIWSVPIGMLILIPSLVVLFAVFK 327 Query: 363 GR 364 GR Sbjct: 328 GR 329 >UniRef50_B9P917 Predicted protein n=7 Tax=cellular organisms RepID=B9P917_POPTR Length = 462 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 91/167 (54%), Positives = 121/167 (72%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 + Y+ LR +WW L+GV+L+ F ++DGFD+G LLPL AR D ERR+VINS+G WEGN Sbjct: 215 LISYDILRLLWWGLLGVLLIAFAVTDGFDLGAAALLPLAARTDVERRVVINSLGPVWEGN 274 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWD 120 QVWLIL GGA+FAAWP++YA +FSGFY+AM L +L RP+AF +R K + WR WD Sbjct: 275 QVWLILGGGAIFAAWPQLYAVSFSGFYLAMFAALVALILRPVAFKFRSKREEPAWRARWD 334 Query: 121 AGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTP 167 A L + +VP ++FG+A GN+L GVPF P +R+ Y G+F+ LL P Sbjct: 335 AVLCMAGVVPALIFGVALGNVLQGVPFRLAPDMRIYYEGTFFGLLNP 381 >UniRef50_B0R8N6 Cytochrome d ubiquinol oxidase subunit II n=2 Tax=Halobacterium salinarum RepID=B0R8N6_HALS3 Length = 331 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 77/364 (21%), Positives = 140/364 (38%), Gaps = 50/364 (13%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 ++L +W+ + L ++++ DGFD GIG L ++ ER + + G W+ N+VW+ Sbjct: 14 DSLPEVWFGAVVFALGMYIVLDGFDFGIGMLYA-TRTDEHERETFLAAFGPVWDANEVWI 72 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 + G L AA+PRVY+ + Y+ + + +L FR L + R + D RW++ D V Sbjct: 73 VAFGTMLLAAFPRVYSRLLADNYLLALGFVVALVFRGLGPELREQREDERWKRYTDYAFV 132 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQG 184 GS+ P++ G+ G L + T +L G+ + + I+ G Sbjct: 133 GGSVFAPLLLGMLAGRWL-------------------FAGATLPVVLTGVGLVAVSIVTG 173 Query: 185 GVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLM 244 +L KT + + A + + ++ + G A Sbjct: 174 AAFLAAKTDSGLASELRSYGVGATVAYLGGVVVLLGTVVATDAGGAASAVL--------- 224 Query: 245 KLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFT 304 S + L L + RGR A + + Sbjct: 225 ----------------SLPVAAVVALSIVAGLGGSVLARRGRYRAWLASALALPTLLTLL 268 Query: 305 AGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 + L+P V P + L + ++ S L L+++ V+ L +VL Y + Y G Sbjct: 269 VAVLLYPTVYPPT-----GLLVREAVVSPLALNLVTVLGFPVLLLVLWYFKFLYGVFSGP 323 Query: 365 MTTE 368 + E Sbjct: 324 IEGE 327 >UniRef50_A3ZTP2 Putative cytochrome d ubiquinol oxidase subunit II n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZTP2_9PLAN Length = 341 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 74/361 (20%), Positives = 125/361 (34%), Gaps = 40/361 (11%) Query: 8 RFIWWLLIGVILVVFMISDGFDMGIGCLL--PLVARNDDERRIVINSVGAHWEGNQVWLI 65 I +++G ++++ G D G G N+ ER+++ +++G WE N +WLI Sbjct: 6 ELIVGIVLGAATTLYLLFGGADFGAGIWEINTAFQSNEKERKLLYHAIGPVWEANHIWLI 65 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGK-IADARWRKMWDAGLV 124 LFAA+P + A S F + LVL + FR + +R I R ++ W Sbjct: 66 FVLVVLFAAFPLAFQALCSAFIIPAFLVLVGIVFRGAGYVFRAYSIDSGRQQQFWRTLFA 125 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGS-FWQLLTPFPLLCGLLSLGMVILQ 183 S P G G L G Y G+ +TP L ++G+ Sbjct: 126 GASAAAPFFLGAIAGTLASG---DSKINAAGVYEGNYLTDWITPMALFTAFFTVGLCCYL 182 Query: 184 GGVWLQLKTV--GVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSN 241 V+L + G + L + A + + L A ++V ++ L A Sbjct: 183 AAVFLTREAEHSGEVELTLVWRQRALATGIWMGVLAAVGLVFVSLEAPELAHGFATRA-- 240 Query: 242 PLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGV 301 W L C +++ + + L + Sbjct: 241 -----------------------WPLVALSAICGTGSLLLLLWRKYTPAAACTMLAAANI 277 Query: 302 IFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 I+ GI +P + P LTL DS + L M+ V I+ +Y Sbjct: 278 IWGWGIAQYPVIAPPF------LTLADSKAPDSVLWAMIGAVAAGAVILGPSLALLFYLF 331 Query: 362 W 362 Sbjct: 332 K 332 >UniRef50_A8V528 Beta and gamma crystallin:Cytochrome bd ubiquinol oxidase, subunit II n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V528_9AQUI Length = 242 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 70/261 (26%), Positives = 119/261 (45%), Gaps = 30/261 (11%) Query: 109 KIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPF 168 K W+ WD +G+ VP ++FG+A GN +LG+P + Y G+F QLL P Sbjct: 6 KKESKTWKAAWDIAYWVGNTVPALLFGVAVGNAVLGIPID----EKGVYHGTFIQLLNPT 61 Query: 169 PLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDG 228 +L G +SL M ++ G +L +KT G ++ + + +LA +++ Sbjct: 62 AVLMGFVSLFMYLMHGTAYLLIKTEGKPFEFAKKGAVVGFIGFVASLILADFFI------ 115 Query: 229 FVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTV-MAIYRGRP 287 + NF + P+ WI P L +L + + Sbjct: 116 -------------------IAIKPTLFLNFFDYPLFWIAPFLMILGLVLYFKYLVVDEKY 156 Query: 288 GWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFL 347 + L G + T + +P + SS+ +LT+W+S SS LTL+IML+ LIFL Sbjct: 157 NKVIYGSILTILGTVLTIALASYPVFIHSSIDEKYNLTIWNSASSDLTLTIMLISTLIFL 216 Query: 348 PIVLLYTLWSYYKMWGRMTTE 368 P+++ YT++ Y G+++ E Sbjct: 217 PLIIGYTVYVYRVFKGKVSAE 237 >UniRef50_B5HKZ6 Cytochrome bd-I oxidase subunit II n=3 Tax=Streptomyces RepID=B5HKZ6_9ACTO Length = 346 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 60/357 (16%), Positives = 130/357 (36%), Gaps = 38/357 (10%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERR---IVINSVGAHWEGNQVW 63 + ++ + + + + G D G G L + +R ++ +++ WE N VW Sbjct: 1 MADFIAWVLVLAIAAYACAGGTDYGAGFWDLLAGGAERGKRSRWLIDHAMAPVWEVNNVW 60 Query: 64 LILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL 123 LI ++ +P ++ FS ++ + L L R F R ++++ A Sbjct: 61 LIFILVIMWTGFPTLFQTVFSAMWLPLALAAVGLVLRGAGFALRKPTRRLAQQRIYGAVF 120 Query: 124 VIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQ 183 I SL+ P FG G + G +++ S +L GLL++ Sbjct: 121 AISSLLTPFFFGAVLGGIASG-------RVKPGTTASTDAWANGTSVLVGLLAIAATAFL 173 Query: 184 GGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPL 243 G V+L + + + V++ F + + + Sbjct: 174 GAVFL---CSDALRFGADDLVDYFRVRVLIAFAVVVVLALIALP---------------- 214 Query: 244 MKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIF 303 V ++ + + + + +L C L TV+ ++R GW + V+ Sbjct: 215 ---VTHNDARYVWDGLTGGLGLLLVILAAVCGLATVLLVWRRSYGWSRHTSVASVALVVG 271 Query: 304 TAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 G P+++P SLT+ ++ + TL ++++ + + +V + Y Sbjct: 272 AWGCAQRPYLLP------ESLTVAEAAGAAHTLRWLVIVTAVAIVLVGPALVLLYRL 322 >UniRef50_D2AUB4 Terminal oxidase subunit II n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2AUB4_STRRD Length = 337 Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats. Identities = 66/352 (18%), Positives = 125/352 (35%), Gaps = 37/352 (10%) Query: 10 IWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDD---ERRIVINSVGAHWEGNQVWLIL 66 I +++ V + ++ + G D G G + R+ +RR++ +S+G WE N VWLI Sbjct: 6 ILLVVMWVGVTLYALLAGADFGGGVWDLVAGRSRAGMPQRRLIEHSIGPVWEANHVWLIF 65 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 L+ +P V+AA S Y+ + L + R AF +R + ++++ A Sbjct: 66 VIVVLWTGFPPVFAAVMSTLYIPLTLAALGIIARGAAFVFRKASTELWQQRLFGAAFATS 125 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S++ P G G + G + L P LL G+L++G+ V Sbjct: 126 SVLTPFFLGAVAGGIASG-----RVPPGLAAGDLVTSWLNPTSLLGGVLAVGVCAYLAAV 180 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 +L +R AL L + D Sbjct: 181 YLCDDAGRAGLPGLAEGFRRRALSTGLGVGAVVLGGIAVVRWDAPRLFDGLT-------- 232 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 + LL+++ ++R + A+L VI+ Sbjct: 233 ---------------HRALPLVVAAAVLGLLSLVLLWRRSYLSVRVTAALAVTSVIWGWP 277 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSY 358 + +P ++P LT+ + + L LV++ + +V+ W + Sbjct: 278 LAQYPIMLPP------DLTVDVAAADPAVLGATLVVLAVGALLVVPSMTWLF 323 >UniRef50_Q2KVX4 Putative cytochrome oxidase D ubiquinol oxidase,subunit II n=5 Tax=Bordetella RepID=Q2KVX4_BORA1 Length = 348 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 61/359 (16%), Positives = 139/359 (38%), Gaps = 39/359 (10%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 + ++ L+ +++ ++ DGFD+G+G LL + +ER +++ + + N+ W + Sbjct: 19 WMPMVFMGLMLLLIAAGIVLDGFDIGVGILLQVAPA--EERGRMMSLLSPWRDANEFWPL 76 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 L G +A+P + A Y + L++ + R ++F++R + + + W G Sbjct: 77 LGIGLFGSAFPFAWGAIMGKLYGPLTLMVLGIVLRSVSFEFRIRASTEV-KPRWIFGFWA 135 Query: 126 GSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG 185 GSL+ + G+ G + F L GL ++ L G Sbjct: 136 GSLLAAIGQGMVLGRIATDYQSDAGYG--------------WFSLFVGLCAVAAYALLGA 181 Query: 186 VWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 WL ++ G + R+ + + L + G +A Sbjct: 182 CWLAMRVDGELQRRAASWARHGIRWTAAGMVAIAVTLGLANAGIFYKWSNA--------- 232 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 A + V + + L + F++ L+ ++ Sbjct: 233 -------AHLGAAAGVWVAMLLGFVAAEMLLARLPGKADRLAWLPFVLCVLLYLLMLAGL 285 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 + FP+++ + +T+WD + + + ++L V+I P+VL++ + +Y ++G+ Sbjct: 286 AYSFFPYLI------LDDMTIWDGSGALGSSRLVLAGVVIGGPVVLVFNILAYRSVFGK 338 >UniRef50_C0AEE2 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0AEE2_9BACT Length = 344 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 63/363 (17%), Positives = 127/363 (34%), Gaps = 33/363 (9%) Query: 13 LLIGVILVVFMISDGFDMGIGCL--LPLVARNDDERRIVINSVGAHWEGNQVWLILAGGA 70 IG L+++++ G D G G L LP R + ++ ++ ++G WE N +WLIL Sbjct: 7 FFIGASLLLYVLLGGSDYGAGILELLPAGGRREAQKHVINEAMGPVWEANHIWLILVIVV 66 Query: 71 LFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIA--DARWRKMWDAGLVIGSL 128 LF +P ++ ++ M+ +L + R AF +R A ++++ + SL Sbjct: 67 LFVGFPTIFTTLMVALHIPMLALLVGIVVRGTAFTFRHYDAIQAPASQRVYTVLFGVSSL 126 Query: 129 VPPVVFGIAFGNLLLGV--PFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 + GI +L G+ A + +PL GL + + V Sbjct: 127 WSALWLGIIVASLGRGLIDTSAEAAHELGPWGVYVAPWWGAYPLAVGLFVACIFVFLACV 186 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 +L +T R R A + ++AG ++ G Sbjct: 187 YLIDETEDAGLKR---RFTRCAAVFNCAVIVAGGGVFAASYGERESLPSV---------- 233 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 F +P+ L + MAI+R ++A ++ Sbjct: 234 -----------FFRNPLTLGVMALATLLFVALWMAIWRRNVLVTRIVAGGQVTLILLGWW 282 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 + P + ++ P L+ + + L +++ +L + ++ R+ Sbjct: 283 LLYAPVAVLTAGGP---LSFYAEAAPPAVLLQLVIALLAGSCFIFPSLVFLLRVFKRRLN 339 Query: 367 TET 369 Sbjct: 340 DAE 342 >UniRef50_A7H8Z5 Cytochrome bd ubiquinol oxidase subunit II n=6 Tax=Myxococcales RepID=A7H8Z5_ANADF Length = 351 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 65/341 (19%), Positives = 112/341 (32%), Gaps = 40/341 (11%) Query: 26 DGFDMGIGC--LLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAF 83 G D G G LL R +R +V ++G WE N VWLIL LF +P +AA Sbjct: 22 GGADFGGGIWDLLATGPRRKAQRDLVEQAIGPIWEANHVWLILVIVLLFTCFPSAFAAIS 81 Query: 84 SGFYVAMILVLCSLFFRPLAFDYRGK-IADARWRKMWDAGLVIGSLVPPVVFGIAFGNLL 142 +V ++L+L + R AF +R + + + W S++ PVV G+ G + Sbjct: 82 IALFVPLVLLLFGIVLRGAAFTFRTYDRPEDKVQVRWGLVFSSSSVLAPVVLGVVVGAIA 141 Query: 143 LGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQL 202 G + L+PFPL GL + + +L ++ G + + Sbjct: 142 SGRLAGPPEGVD------PLAWLSPFPLSVGLFAAALFAFLAASYLAVEAKGELQEDFRR 195 Query: 203 ATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESP 262 A +V +LAG W A+ F Sbjct: 196 RAIGAGGVVFGAAVLAGVLSWFDAPLVFAGLTRRGFSLPLHAATALAAVTAFAALFRRRY 255 Query: 263 VLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPIS 322 L + ++ G + +P+++ Sbjct: 256 RLARAAA-------------------------AAQVTLIVLGWGASQYPYLVVP------ 284 Query: 323 SLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 LTL D+++ + T +L + + + G Sbjct: 285 GLTLADASAPRATQVAVLWALAAGAVFLFPALYLLFRVFKG 325 >UniRef50_A0LZZ1 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Gramella forsetii KT0803 RepID=A0LZZ1_GRAFK Length = 341 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 65/307 (21%), Positives = 119/307 (38%), Gaps = 29/307 (9%) Query: 22 FMISDGFDMGIGCLLPLVARNDD--ERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVY 79 +++ G D G G + +R + R V N +G WE N +WLI+ L+ A+P + Sbjct: 16 YVLLGGADFGAGIVELFSSRENKKLNRDTVYNVIGPVWEANHIWLIILIVILWIAFPGYF 75 Query: 80 AAAFSGFYVAMILVLCSLFFRPLAFDYRGKIA-DARWRKMWDAGLVIGSLVPPVVFGIAF 138 ++ + LVL + R +AF +R A + + ++ I SL+ P+ G++F Sbjct: 76 NIIIIYLHIPLTLVLLGITMRGVAFIFRHYDAVVDKSQDWYNHMFRISSLITPIFLGMSF 135 Query: 139 GNLLLGVPFAFTPQLRVEYLGSFWQ-LLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIH 197 G L+ G + F L F L GL + L +T G I Sbjct: 136 GALISGKIMVTNDYSETTFPEIFMDPWLNIFTFLTGLFYASLCAFLASTLLIGETTGDIR 195 Query: 198 LRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNN 257 ++ ++++A+ ++ ++ G L G ++ +D Sbjct: 196 ---KMYSRKSAIFTVVLVVIGGTVLGYGYLTEMVFVED---------------------- 230 Query: 258 FVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSS 317 F+ + V I L + AI + A + VIF A T FP ++ + Sbjct: 231 FLHNWVSLIAVGLSGLILIPLWRAIRNQHRLLTRIFAGMQILLVIFAAVYTHFPNLIITQ 290 Query: 318 VSPISSL 324 ++ L Sbjct: 291 TGEVNML 297 >UniRef50_A9AX76 Cytochrome bd ubiquinol oxidase subunit II n=2 Tax=Bacteria RepID=A9AX76_HERA2 Length = 336 Score = 147 bits (371), Expect = 7e-34, Method: Composition-based stats. Identities = 71/370 (19%), Positives = 131/370 (35%), Gaps = 43/370 (11%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGC--LLPLVARNDDERRIVINSVGAHWEGNQVWL 64 L + + + ++ + I G D G G LL R +R + ++VG WE N VWL Sbjct: 3 LEVVVAAIGLLGVITYAILAGADFGGGIWDLLAWGPRRTQQREAIAHAVGPVWEANHVWL 62 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRK-----MW 119 I LF +P +AA G + L L + R AF +R + W Sbjct: 63 IFIIVVLFTGFPTAFAALSIGLFAPFHLALLGIILRGAAFVFRAYSPQKEQQPSQSSQRW 122 Query: 120 DAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGM 179 S++ PV+ G+ + G ++ E +TP + GLL+L + Sbjct: 123 GTIFGAASVITPVILGMTLSAVSAGQLRVIDGVVQSE----GIVWMTPLAIAMGLLALAL 178 Query: 180 VILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGP 239 V++ ++T + + A V+ LL+ L+ Sbjct: 179 CAYLAAVYMTIETRDELQADFRQRALLAGTAVVGLSLLSLPLLYFTAQH----------- 227 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299 + + S +G LL+ A+ R R A + Sbjct: 228 ---------------LWEGLISVRAAPVLTIGLLAALLSGWALLRWRFQLARGAAIVQIS 272 Query: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359 ++ GI +P+++ +TL +++ + TL +LV + + L I+L + + Sbjct: 273 CLLAGWGIAQYPYIIYP------DITLATASAPRATLIFILVALPLGLLILLPSLWFLFK 326 Query: 360 KMWGRMTTET 369 + Sbjct: 327 VFKSAPREDA 336 >UniRef50_C4DV22 Cytochrome d oxidase cyd, subunit II n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DV22_9ACTO Length = 317 Score = 147 bits (370), Expect = 9e-34, Method: Composition-based stats. Identities = 73/361 (20%), Positives = 142/361 (39%), Gaps = 48/361 (13%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 + ++++L+G + + G+D G+G LL L R D ERR+++ ++G + GN+VWL+ Sbjct: 1 MAELFYVLLGAVFAGYFALAGYDYGVGVLLRLCGRTDTERRLILGALGPFFLGNEVWLVA 60 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 G L AA+P A +G Y A+ ++ ++ A R + A R +WD +V Sbjct: 61 GLGLLLAAFPLAEGALLTGLYPALFPLIAAIVLFTAAVQIRSRATFA--RPLWDLLIVGS 118 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 + + +G +FG +L G+P P P++ G L+ + + G Sbjct: 119 AALISFGWGASFGLVLQGMPVR----------------FGPLPIITGALTTALFTMHGAS 162 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 L ++T I R+ L R ++ + Sbjct: 163 LLAVRTPDPIRGRAALIGSRMTFSAVVLVI-----------------------------A 193 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 A+ + + + I L L + R RPG + + A Sbjct: 194 AALTAAVNAHAVNQPVIAAIGALALIAVILASQRLRRRNRPGLALIATGTAATLPMIIAA 253 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 ++P++ + SLTL + ++ +L +L + LP++L + +++ T Sbjct: 254 AAMYPYLYVD-LDAAHSLTLTQAVAANSSLDFLLATAVPVLPVLLGFQAATWWIWRASPT 312 Query: 367 T 367 Sbjct: 313 K 313 >UniRef50_UPI0001B55F87 cytochrome bd-type menaquinol oxidase subunit II n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B55F87 Length = 329 Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats. Identities = 81/368 (22%), Positives = 147/368 (39%), Gaps = 42/368 (11%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVAR--NDDERRIVINSVGAHWEGNQVWL 64 + IWW ++G++L + G+D G+G LLP +AR ++ +R V+ +VG + N+VWL Sbjct: 1 MVTIWWGVLGLLLGGYFALAGYDYGVGMLLPALARSRDEAGQRRVLGAVGPFFLANEVWL 60 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 + A G LF A+P + F+G YV ++L+L L A R + + R+ W + Sbjct: 61 VAAVGVLFGAFPHLEGRVFAGAYVLVVLLLLGLVTFTAAVQLRSRHPEGS-RRGWTFAIT 119 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQG 184 G+LV V +G+ GNL+ G+P + L P+ +L GL + + LQG Sbjct: 120 AGALVTAVSWGLFLGNLVRGLPLDA----HGRPIDDVLALFNPYAVLWGLGFVALFCLQG 175 Query: 185 GVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLM 244 V+L ++ + R + T+ V + +A W Sbjct: 176 LVFLAVRGPAELTGRVRRLTRSLLPPVGVFLAIATVWGAF-------------------- 215 Query: 245 KLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFT 304 V A + + ++ L G +P L+ Sbjct: 216 -SVTDGSWAALAVVAVAFAAYLLVLFGL------------RKPRLALPAVMLLSACPALL 262 Query: 305 AGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 G+ FP V+ SS LT+ + ++ +++ L ++L ++ Sbjct: 263 VGVLRFPVVLSSSA--GYQLTVEQAATTPDMTAVLGWFAAPALLVLLAAQWLTWRAHRRP 320 Query: 365 MTTETLRR 372 + +L Sbjct: 321 VDENSLLH 328 >UniRef50_Q2JGE7 Cytochrome bd ubiquinol oxidase, subunit II n=3 Tax=Frankia RepID=Q2JGE7_FRASC Length = 330 Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats. Identities = 67/355 (18%), Positives = 122/355 (34%), Gaps = 40/355 (11%) Query: 13 LLIGVILVVFMISDGFDMGIGC--LLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGA 70 +++ V L + + G D G G LL D+R+++ S+G WE N VWLI A Sbjct: 9 IIMVVGLTAYALLGGADFGGGVWDLLARGRHAGDQRKLISASLGPVWEANHVWLIFIVVA 68 Query: 71 LFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWR-KMWDAGLVIGSLV 129 +F+ +P Y S V + + L + R A+ YR A W + S + Sbjct: 69 MFSGFPEAYGVIGSSLEVPLSVALVGIVLRGAAYVYRSYGAGGAGPDHWWGHVFAVSSTI 128 Query: 130 PPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQ 189 P G+A L G + F + +PF L+CG ++ V+L Sbjct: 129 APFALGVAGAALASG---------DLSTDDPFAPVRSPFGLVCGAFAVAATAFLAAVYLC 179 Query: 190 LKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAV 249 R A L + I G VL A L Sbjct: 180 ----------------RDAASSPATAHLVADFRRRAIGGAVLCGALAAILLPLLWADAPQ 223 Query: 250 LPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITL 309 + G + + L + ++A++R + G + A L +++ + Sbjct: 224 VAGRFRDR------SLPLVALSTLGGIGALVALWREQFGAARIAAGLAVGAMLWGWAVAQ 277 Query: 310 FPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 +P ++ T+ + + + ML + L +++ + + Sbjct: 278 YPDLVVGQA------TVDTAAAPTTNIRAMLFAIAGGLVVLVPSLMMLFRLFSRP 326 >UniRef50_A6G8S6 Cytochrome bd ubiquinol oxidase, subunit II n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G8S6_9DELT Length = 344 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 59/362 (16%), Positives = 119/362 (32%), Gaps = 44/362 (12%) Query: 12 WLLIGVILVVFMISDGFDMGIGC--LLPLVARNDDERRIVINSVGAHWEGNQVWLILAGG 69 + LIGV ++ + ++ G D G G LL R + +R ++ ++ WE N +W+I Sbjct: 7 YWLIGVAVIAYAVTAGADFGGGLWDLLATGPRRERQRELIAEAIAPIWEVNHIWMIFVVV 66 Query: 70 ALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKM-WDAGLVIGSL 128 LF+ +P +A +V ++LVL + R AF +R + R+ W I S Sbjct: 67 MLFSVFPHAFAVVSIALHVPILLVLVGIVLRGSAFIFRAYGMEPDERRAQWGRVFAITSA 126 Query: 129 VPPVVFGIAFGNLLLGVPFAFTPQLRV--EYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 P+ G L G G F +PF L GL +L + + Sbjct: 127 ATPIALGAILAALSSGDILVELDAAGAPQVRSGFFVGWTSPFALAVGLFTLALFTMLAAT 186 Query: 187 WLQLKT--VGVIH----LRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPS 240 +L + G + R + A + + W Sbjct: 187 YLAREAQVRGELELSIDFRRRAVISEAVAGALAMLVCWRAWA------------------ 228 Query: 241 NPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFG 300 +N + P L + ++ + R + + Sbjct: 229 ---------ESPELFHNLLAQPWSLPAQALTAAVAVAAIVCLRRDMLQVARALVIVQVAL 279 Query: 301 VIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYK 360 V+ G+ + ++ ++ D+ + + L+ + ++ + + W + Sbjct: 280 VVVGWGVAMDGDLVLGALDHQ------DAGAREAVLARLPYVLAGGSVLFVPALWWLFRV 333 Query: 361 MW 362 Sbjct: 334 FK 335 >UniRef50_A9CZ56 Cytochrome bd ubiquinol oxidase, subunit II n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9CZ56_9RHIZ Length = 251 Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 107/242 (44%), Gaps = 17/242 (7%) Query: 5 ETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWL 64 E L +I+ L+G+ ++V++I DGFD+GIG L PL +D ++ +++++G W+ N+ WL Sbjct: 8 EWLPYIFAALMGIAILVYVILDGFDLGIGILSPLA--DDTQKDRMVSAIGPFWDANETWL 65 Query: 65 ILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLV 124 +LA G L A+P + + Y + ++L L R +AF++R K+ + W+ Sbjct: 66 VLAVGLLLVAFPVAHGVILTTLYFPVAVLLIGLILRGVAFEFRAKV-SLDAKPSWNRMFF 124 Query: 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQG 184 IGSL+ + G G +LG+ ++ F L + G Sbjct: 125 IGSLMSALAQGYMLGLYVLGLDTSWPAVG--------------FAALVAVCLAAAYAAIG 170 Query: 185 GVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLM 244 WL KT G + +R+ + + LV L + + + +P Sbjct: 171 AAWLIHKTEGTLQVRAVKWLRASLGLVALGMAAISLATPLASTRDMGSLAGLSRKPHPGT 230 Query: 245 KL 246 Sbjct: 231 SA 232 >UniRef50_A4FDV9 Cytochrome d ubiquinol oxidase subunit II n=4 Tax=Actinomycetales RepID=A4FDV9_SACEN Length = 340 Score = 137 bits (346), Expect = 6e-31, Method: Composition-based stats. Identities = 57/366 (15%), Positives = 123/366 (33%), Gaps = 38/366 (10%) Query: 13 LLIGVILVVFMISDGFDMGIGCLLPLVARNDD---ERRIVINSVGAHWEGNQVWLILAGG 69 ++ + L ++++ G D G G L + +R ++ +S+G WE N VWLI Sbjct: 9 AVLWIGLTLYVLFGGADFGGGLWDLLAGGAERGRPQRELIEHSIGPVWEANHVWLIFVIT 68 Query: 70 ALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLV 129 + +P +A + Y+ + L + R AF +R + R R+++ A S+V Sbjct: 69 LFWTVFPAAFAPFAATLYIPLTLAALGIIARGAAFAFRKVSDEFRQRRLFGAAFAFSSVV 128 Query: 130 PPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQ 189 P G G + G + P + G+L++ V+L Sbjct: 129 TPFFLGTLLGAVASG-----RVPPDLASGDVLTSWWNPTSVTAGVLAVVTTAYLAAVFL- 182 Query: 190 LKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAV 249 T R L ++ ++ G + + A Sbjct: 183 --TADARREREPELASAFRLRALVSGVVLGMLTLAALPVVRVDAPHLFAGLTGKA----- 235 Query: 250 LPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITL 309 + LL++ + R + A++ V++ G+ Sbjct: 236 ---------------LPLVVTSVVAGLLSLALLLARRYLLVRITAAVAVTAVLWAWGVAQ 280 Query: 310 FPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTET 369 +P ++P +T+ D+ ++ L +L ++ + +++ L+ Y Sbjct: 281 YPVMLP-------GVTVADAAAAPSVLVPVLWVLAVGSVLLVPSLLYLYAIFQRDPARAP 333 Query: 370 LRRNEN 375 + Sbjct: 334 GASAGH 339 >UniRef50_C1ZA12 Cytochrome bd-type quinol oxidase, subunit 2 n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZA12_PLALI Length = 345 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 67/371 (18%), Positives = 125/371 (33%), Gaps = 42/371 (11%) Query: 10 IWWLLIGVILVVFMISDGFDMGIGCLLP--LVARNDDERRIVINSVGAHWEGNQVWLILA 67 I + + + L + I G D G G + +R+++ +G WE N VWLI Sbjct: 11 ILYGTLLLALTAYAILGGADFGAGIWEFNTSFRSHRRDRQLLREVIGPVWEANHVWLIFV 70 Query: 68 GGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIA-DARWRKMWDAGLVIG 126 L++A PRV+ ++ ++L L + R AF +R + + + Sbjct: 71 LVILWSAMPRVFQHLCVVMWLPLLLGLAGIVCRGAAFIFRAYSPVENSVTRASTVLFGLA 130 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S P G G +L + S L P + G ++ + + V Sbjct: 131 STAAPFFLGTVVGGILT--------REATNPRLSQTAWLNPLAIYSGFFAVAVCLYLCSV 182 Query: 187 WLQLKTV-GVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMK 245 +L + ++ RA L + LLA L +A+ +PL Sbjct: 183 FLFREASLRHERFLMEIWRSRAMLSGVWTGLLAMAGLAFVSSEQPEMARRLIWGDSPL-- 240 Query: 246 LVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTA 305 LL + + +++A+Y P L + L V++ A Sbjct: 241 ----------------------VLLSWAGGMFSMVALYFRWPLAAVLASVLAVAAVLWGA 278 Query: 306 GITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRM 365 G+ + P M + L + L MLV + + ++L W ++ Sbjct: 279 GLAVSPATMIPEIP------LDQLVAPPSVLWAMLVAIAGGMLLLLPSLAWLFWLFKSSS 332 Query: 366 TTETLRRNENE 376 + + Sbjct: 333 ALDHEHLAHSS 343 >UniRef50_B9TGE2 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TGE2_RICCO Length = 325 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 72/206 (34%), Gaps = 6/206 (2%) Query: 86 FYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGV 145 Y + +L +L R +A +R A AR + WDA ++ GS + G+ G+L+ G+ Sbjct: 1 MYPVIFAMLFALILRGVAIGFRS-EATARAKARWDAVMLTGSTMAAFCQGVLVGSLVQGI 59 Query: 146 PFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATK 205 R Y G W L F L CG+ G WL +T G + R++ A+ Sbjct: 60 -----RTARGTYQGGPWDWLGAFALFCGVALALGYAWLGASWLIWRTEGSLQQRARRASL 114 Query: 206 RAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLW 265 + W D + D +G + + A + + Sbjct: 115 ALGTATAASTAIVSLWTLHLNDYYARRWTDDSGGVALPVAVFVFASLAAGFVYGIARRRA 174 Query: 266 IFPLLGFFCPLLTVMAIYRGRPGWGF 291 PL+ + V + + Sbjct: 175 FAPLVFALICVAAVYHHRARQFPAAY 200 >UniRef50_C7QJB4 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QJB4_CATAD Length = 338 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 60/338 (17%), Positives = 109/338 (32%), Gaps = 37/338 (10%) Query: 28 FDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFY 87 F G+ LL D ERR++ +++G WE N VWLI A F+ +P + G Sbjct: 26 FGAGVWDLLARGRHADRERRLIAHALGPVWEANHVWLIFVIVATFSGFPTAFGIIARGLE 85 Query: 88 VAMILVLCSLFFRPLAFDYRGKIADARWRK-MWDAGLVIGSLVPPVVFGIAFGNLLLGVP 146 + + L L + R A+ YR A +W + S + P + G++ L G Sbjct: 86 LPLALALAGIVLRGAAYVYRAYGEGAAGPDSLWSRVFAVASSITPFMLGVSGAALATG-- 143 Query: 147 FAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKR 206 G +PF L+ G+ ++ + V+L Sbjct: 144 ------KITATSGPLTPFDSPFTLVAGVFAVVVTAFLAAVYLCHDAGTDPETED------ 191 Query: 207 AALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWI 266 + + A A S L+ L+ + F E + Sbjct: 192 --------------LVPAFRRRALGAAAVAGVVSMALLPLLYQDAPIVAHRFTERSI--P 235 Query: 267 FPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTL 326 F + C ++ I++ A+ GV+ +P + + T Sbjct: 236 FVAVAVVCGFGSLAVIWKRHYVLARATAATAVIGVLLGWAAAQYPDLAVGAA------TA 289 Query: 327 WDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 S + L +L+ + + ++L G Sbjct: 290 RGSAAGPANLHALLIAMGFGMVVILPAFYLLLKVFSGP 327 >UniRef50_D1SIK0 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1SIK0_9ACTO Length = 335 Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats. Identities = 80/360 (22%), Positives = 140/360 (38%), Gaps = 32/360 (8%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 + W+ L+G+ +++ G+D G+G LL R + ++G + GN+VWL+ Sbjct: 1 MELAWYALLGLFFATYLVLGGYDYGVGLLLARRGPAPGNRATL-TALGPFFLGNEVWLVA 59 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 A G LF A+PR+ SGFY A++ L + R + A A R WD +V+G Sbjct: 60 AVGILFGAFPRLEGELLSGFYPAVLAALAGVVLVTAGVQLRSRPASAAARARWDRVVVVG 119 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 L+ + +G LL GVP + + L TPF GL L +V + G Sbjct: 120 CLLAALGWGAVLAGLLQGVPLSADGHVV-----GVGHLATPFVAAAGLALLALVAVHGAT 174 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 +L L+ ++ A + +A+ A PL + Sbjct: 175 FLTLRLPAAEAPALARLASGLVPAALVAVGAATVLGVLSDRVRAAVARPAVAVLLPLALV 234 Query: 247 VAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAG 306 A+L + V F + G Sbjct: 235 AALLAARAALRRGRAGV--------------------------AFAATATALALPAPLIG 268 Query: 307 ITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMT 366 L+P ++ S+ P +SLT+ ++ + + TL+++ + L LP +L + ++ GR+ Sbjct: 269 AALWPRILVSTADPAASLTVAEAAAGRPTLALLGWLALPLLPALLGFQAMCWWVFRGRID 328 >UniRef50_C3DRT5 Cytochrome d ubiquinol oxidase subunit II n=2 Tax=Bacteria RepID=C3DRT5_BACTS Length = 121 Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats. Identities = 49/121 (40%), Positives = 66/121 (54%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLI 65 L IW+ L GVI V+ I DG+ +G G + P V ++ ER + ++G W GN+VWLI Sbjct: 1 MLAIIWFGLWGVIWTVYFILDGYALGNGMIFPFVTKDRQERNQLQEAIGPFWGGNEVWLI 60 Query: 66 LAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVI 125 AGGA FAA+P YA FS Y + LVL +LF R ++ K W+K I Sbjct: 61 TAGGATFAAFPVTYANMFSYLYTPLFLVLLALFARAAGLEFMHKDDSPIWQKTCKWAFAI 120 Query: 126 G 126 G Sbjct: 121 G 121 >UniRef50_D2B5X6 Cytochrome bd-type quinol oxidase subunit 2-like protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B5X6_STRRD Length = 249 Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 91/252 (36%), Gaps = 18/252 (7%) Query: 14 LIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFA 73 L+ V + + G D+G+G LLP + R+DDER V+ S+ + GN+VWLI + G L Sbjct: 5 LLAFFAVGYFVLAGADLGVGALLPYLGRSDDERGRVLASITPFFLGNEVWLIASAGILVG 64 Query: 74 AWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVV 133 A+P + SG YV +++L R RG++ A WR D + GS V + Sbjct: 65 AFPVLEGELLSGMYVPFVMLLLGWVVRDAGIWLRGRVDRAGWRGGCDGAVAAGSWVVVLS 124 Query: 134 FGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTV 193 +G + + V + + G + L+ Sbjct: 125 WGFILPGMGQEPVTGLGAAIVVP------------------AVVALFCAHGLAFAGLRLA 166 Query: 194 GVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGA 253 G R++ ++ + G L + G L + L L L Sbjct: 167 GGPRERARRFYGASSERTIYALTAGGMALVCLLAGSRLPLAENLADPATLALLTPSLLVI 226 Query: 254 WMNNFVESPVLW 265 LW Sbjct: 227 TPVLVASQVWLW 238 >UniRef50_UPI0001C31BDC Cytochrome bd-type quinol oxidase subunit 2- like protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31BDC Length = 424 Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats. Identities = 54/322 (16%), Positives = 103/322 (31%), Gaps = 37/322 (11%) Query: 17 VILVVFMISDGFDMGIGCLLPLVARNDDE---RRIVINSVGAHWEGNQVWLILAGGALFA 73 V L+++++ G D G G R + R S+ WE N VWL+ + Sbjct: 13 VGLILYVVLAGADFGAGFWQLAAGRGERGSRIREHAHASMAPVWEANHVWLVFILVIAWT 72 Query: 74 AWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVV 133 +P +A+ S + + + + FR A+ R + R ++ D + S++ P Sbjct: 73 CYPEAFASIASTLSIPLFIAAIGIVFRGAAYALRAGTSQRRELRVIDTVFAVSSILTPFA 132 Query: 134 FGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTV 193 G G + G + ++ L G+L++ V+L Sbjct: 133 LGTVIGAIASG-----RVPVGNAAGDAWTSWTNTTSLTIGVLAVVTSAYIAAVYLAADAA 187 Query: 194 GVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGA 253 + A + AL L + + + V D + L Sbjct: 188 RDGDAEMEEAFRHRALGTGLVAGVVAVAGLLVLRDDVRSLYDELVSGDGL---------- 237 Query: 254 WMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFV 313 ++ + T+ + R W A+L VI + P + Sbjct: 238 ------------PALIVSALAGIGTLALVARRSYEWARYSAALAVAAVIAGWALAQSPVL 285 Query: 314 MPSSVSPISSLTLWDSTSSQLT 335 +P LT+ + +S T Sbjct: 286 LP-------GLTVEQAAASHDT 300 >UniRef50_D2BDC9 Cytochrome d ubiquinol oxidase subunit II n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BDC9_STRRD Length = 255 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 49/259 (18%), Positives = 95/259 (36%), Gaps = 20/259 (7%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 + +W ++ ++L+ + +G +G G LLP + R +R V+ ++ N+VWL+ Sbjct: 1 MDILWTGVLALLLIGYFALEGSGIGAGMLLPALGRTQPDRDRVVAAMAPFVLANEVWLVA 60 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 G LF A+P + SG Y ++ +L S R +R ++ WR WD + +G Sbjct: 61 VAGVLFGAFPSIEGEVLSGLYPLVVTLLVSWILRDAGLWFRRRLDGHAWRAGWDWMICLG 120 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 S + +G+A + G+ + L+ L G Sbjct: 121 SYGLALSWGMALVAMAGGLSGPPIGLPGLGGG---------------LVVAAAFALHGWT 165 Query: 187 WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKL 246 +L + G + R ++ +A + V + + PS L L Sbjct: 166 FLSWRLPGQVTG-----ASRTGRALLASAGVAALPVAVLLAALAPWLLEHIAPSGTLNVL 220 Query: 247 VAVLPGAWMNNFVESPVLW 265 ++ +W Sbjct: 221 SVMILPFAPLMLGAQVWVW 239 >UniRef50_D1A755 Cytochrome bd ubiquinol oxidase subunit II n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A755_THECD Length = 248 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 46/187 (24%), Positives = 81/187 (43%), Gaps = 15/187 (8%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 + IW L+ + + +GFD+G+G LLP++ R +R ++I ++ N+VWL+ Sbjct: 1 MELIWLGLLVALPAGYFALEGFDLGVGMLLPVLGRTRRDRDLMIAAIAPFVLANEVWLVA 60 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 A G L A+P + G Y ++++L + R +R ++ WR +WDA + Sbjct: 61 AAGVLIGAFPLLEGKVLFGLYPLVVVMLLAWVLRDAGLWFRRRLDGDAWRTLWDAVIAAA 120 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGV 186 SL + +G+A + G L P LL G+ L G Sbjct: 121 SLTLSLCWGMALYAITTGFTA---------------PLWHPLGLLLGVTLTLAFALHGRA 165 Query: 187 WLQLKTV 193 +L + Sbjct: 166 FLGRRVP 172 >UniRef50_A8EQ33 Cytochrome D ubiquinol oxidase subunit II n=1 Tax=Burkholderia pseudomallei 406e RepID=A8EQ33_BURPS Length = 278 Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 3/157 (1%) Query: 7 LRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLIL 66 L +W ++ + ++++++ DGFD+G+G L R++ ER +I SV W+ N+ WL+L Sbjct: 5 LVPLWAGVLALSVLMYVLLDGFDLGVGMLF-FFHRDEAERDRMIASVSPVWDFNETWLVL 63 Query: 67 AGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIG 126 G L AA+P ++ Y ++ +L L FR +AF++RG + +W IG Sbjct: 64 GGTLLLAAFPGAFSVVVPAVYFPVLAMLLGLLFRGVAFEFRGVAG--ARKTVWSRAFAIG 121 Query: 127 SLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQ 163 SLV G+ G + G V Sbjct: 122 SLVATAAQGVVLGMFVQGFVCVIAFIAVVSVWTPLAD 158 Score = 75.0 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 80/201 (39%), Gaps = 9/201 (4%) Query: 170 LLCGLLSLGMVILQGGVW--LQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGID 227 ++ + + +L G ++ + + GV R + ++ A+ ++ G L + + Sbjct: 79 VVPAVYFPVLAMLLGLLFRGVAFEFRGVAGARKTVWSRAFAIGSLVATAAQGVVLGMFVQ 138 Query: 228 GFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRP 287 GFV + S A + W + P+L L ++ RG Sbjct: 139 GFVCVIAFIAVVSVWTPLADARIAARWFA-WPNLLFFSPVPVLTAALAWLAARSLRRGGE 197 Query: 288 GWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFL 347 F+ + + F I+L+P V P S+TLW + S+ + +++ L Sbjct: 198 ALPFVASIGLFFLAFSGLTISLWPHVAPP------SITLWSAASASASQEFLMIGTAFML 251 Query: 348 PIVLLYTLWSYYKMWGRMTTE 368 P++L Y WSY+ G++ + Sbjct: 252 PVLLFYVCWSYWVFRGKVRGD 272 >UniRef50_Q937L0 Cytochrome d terminal oxidase (Fragment) n=1 Tax=Erwinia chrysanthemi RepID=Q937L0_ERWCH Length = 121 Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats. Identities = 62/121 (51%), Positives = 80/121 (66%) Query: 258 FVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSS 317 F PVLW PLLG PL+T + + FL +SL VI TAGI +FPF+MPS Sbjct: 1 FNNHPVLWAVPLLGVVLPLMTAVMARAEKGAMAFLFSSLSIACVILTAGIAMFPFIMPSV 60 Query: 318 VSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLRRNENEL 377 P SLT+WD+TSS LTL +M V+ +IF+PIVL YT+W YYKM+GR+T E + +N + L Sbjct: 61 TVPNVSLTVWDATSSLLTLRVMTVVAIIFVPIVLSYTIWCYYKMFGRITKEHVEQNSHSL 120 Query: 378 Y 378 Y Sbjct: 121 Y 121 >UniRef50_C1YQX5 Cytochrome bd-type quinol oxidase, subunit 2 n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YQX5_NOCDA Length = 307 Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats. Identities = 56/292 (19%), Positives = 98/292 (33%), Gaps = 20/292 (6%) Query: 21 VFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYA 80 +++ G D+G+G L+P +AR ++RR V+ ++ ++ ++VWL+ A G L +P + Sbjct: 15 GYLVLAGADIGLGMLMPRLARGPEQRRRVVAAIAPYFLASEVWLVAAVGVLAGLFPALEH 74 Query: 81 AAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGN 140 A + + + ++L R R ++ RWR + D LV GS +G+ Sbjct: 75 HAVAELWPVLAVLLAGWLVRDAGLWLRARVDGERWRLVCDCALVGGSWALAAAWGLVVAG 134 Query: 141 LLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRS 200 LL G A + F LC + + L+G + + VG S Sbjct: 135 LLAGGLTA-----------------SAFTPLCAVAVTALFALRGAAFGAERLVGPADSES 177 Query: 201 QLATKRAA---LLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNN 257 R + L V G L A + L+ + G Sbjct: 178 ADVAARDTRPLARLALGAAALAAVAAVLPGGPDLSPGPAAALTAVLLAALVATSGLVGPM 237 Query: 258 FVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITL 309 + G L P + VI + Sbjct: 238 LSRHTSAAAIAVPGLLVALAAPELPSAPIPATTAVFVWATLVPVIPVMFVGQ 289 >UniRef50_C9LLF6 CydB n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLF6_9FIRM Length = 305 Score = 103 bits (258), Expect = 9e-21, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 89/273 (32%), Gaps = 23/273 (8%) Query: 17 VILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWP 76 L +++ + D G+ + P+VA+N++ER+ +N + +GN+ W L G A + Sbjct: 14 FFLAIYLWLESQDFGVAIVAPMVAQNEEERKTALNLLKPGLDGNEAWAFLCAGVTGALFS 73 Query: 77 RVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGI 136 + + ++L + R A W P ++ G+ Sbjct: 74 NGRFNIPESTFWPLGIILTGMIVRLAA-------------AFWGNIFQ----QPLLLRGV 116 Query: 137 AFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVI 196 F ++ + W L T + + I G ++ KT + Sbjct: 117 RFITIINVISAGVLALELAN-----WDLFTTKSVFGLIWLFMSCIQVGAIYGACKTANPL 171 Query: 197 HLRSQLATKRAALLVMLCF-LLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWM 255 R + +L ++ F + G W +G +G S+ ++ Sbjct: 172 GERFRATFLVTNILSLMAFIAVFGAWYVLGNREIFGTDMLLSGFSSVVIISAIAFFSVRA 231 Query: 256 NNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPG 288 + +L G C L M + P Sbjct: 232 RHVYAGMLLSYIAQWGAVCIYLFTMMLSFPSPA 264 >UniRef50_Q47RW4 Putative cytochrome D ubiquinol oxidase subunit II n=1 Tax=Thermobifida fusca YX RepID=Q47RW4_THEFY Length = 304 Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 56/285 (19%), Positives = 99/285 (34%), Gaps = 13/285 (4%) Query: 20 VVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVY 79 + + G D+G+G LLP AR+ ERR +I + ++ G++VWL+ G + P Sbjct: 14 GGYFVFAGSDIGLGMLLPYAARSPAERRRLIAVIAPYFLGSEVWLVATIGVVAGLVPVWE 73 Query: 80 AAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFG 139 AA + + +L+L + R RG++ ARWR +WD + GS + V +G Sbjct: 74 AAVVTAQWPVFVLLLAAWLGRDAGLWLRGRLPAARWRAVWDGAVAAGSWLLAVAWGFVVA 133 Query: 140 NLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLR 199 LL G L L F + G L Sbjct: 134 ALLGGGTLRPGVTLVCVALVVLL-----FAVRGAAF--------GAERLAAAEGVGGAEP 180 Query: 200 SQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFV 259 + A + +LV ++ V + ++ AV G + Sbjct: 181 GERAARAFRVLVRAGLVVVPVAAGVLWVSAGAAPAVVVAGAEVVLAAAAVDAGRGWARVL 240 Query: 260 ESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFT 304 + + + P++ L A+ R A + ++ Sbjct: 241 SALGMAVLPVVLAVGAELPAPAVERNSLLLLVAAAGPLVPVMVAG 285 >UniRef50_D1NY02 Cyanide-insensitive oxidase CioB n=1 Tax=Providencia rustigianii DSM 4541 RepID=D1NY02_9ENTR Length = 156 Score = 93.5 bits (231), Expect = 1e-17, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 65/181 (35%), Gaps = 29/181 (16%) Query: 190 LKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAV 249 +KT G + + LL++ + W + + Sbjct: 1 MKTEGHLRKTMYRILRPLTLLMLAVIGVISVWTPMQSEAIYQRWF--------------- 45 Query: 250 LPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRG-RPGWGFLMASLMQFGVIFTAGIT 308 PLL C L + ++ R FL A + F GI+ Sbjct: 46 -------TLPNLFFFLPVPLLVIGCVWLIIKSVKRQQHDSIPFLSALALIFLGFTGLGIS 98 Query: 309 LFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTE 368 ++P ++P +++ D+ +L MLV L +P++L+YT WSYY G++T E Sbjct: 99 IWPNLIPPAIN------FRDAAGPPESLGFMLVGALFIIPVILVYTYWSYYVFRGKITPE 152 Query: 369 T 369 Sbjct: 153 Q 153 >UniRef50_A8V4U0 Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V4U0_9AQUI Length = 98 Score = 81.9 bits (201), Expect = 4e-14, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 2/88 (2%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 M + TL IW+LL G+ L+ + ++DGFD+G G L A++++ R +N+VG W+G Sbjct: 3 MEMFTTLNGIWFLLAGIFLIGYSLTDGFDLGSGILHIF-AKDENTRITYMNAVGPVWDGM 61 Query: 61 QVWLILAGGALFAAWPRVYAAAFSGFYV 88 + L+L A F + F FY+ Sbjct: 62 KSGLLLEEYA-FRSLSCCVCCIFQCFYL 88 >UniRef50_B3SF07 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3SF07_TRIAD Length = 262 Score = 77.3 bits (189), Expect = 9e-13, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 67/168 (39%), Gaps = 7/168 (4%) Query: 203 ATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESP 262 + +A + ++ +L + L + P + ++ W+ Sbjct: 83 WKRFSAKVHLIATILVVLGTHHSAFWILSLNSWMHTPDGISVIDGSIRIHDWLKIDSYDF 142 Query: 263 VLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMA-SLMQFGVIFTAGITLFPFVMPSSVSPI 321 L + F L + + W + + + + F+ GI+L+P+++ Sbjct: 143 SLLHYCFFIFGRGLAFEFRLKAMKSRWIWDWSFIVGSYLATFSQGISLWPYIVVP----- 197 Query: 322 SSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTET 369 +T+WDS + TL + +I+ I LPIV+ Y+++ YY ++ + Sbjct: 198 -DITIWDSAAPPETLKFVSIIICISLPIVIGYSIFVYYLFKEKLLLKD 244 Score = 41.9 bits (97), Expect = 0.043, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Query: 95 CSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAF 138 +F R LAF++R K +RW +WD ++GS + GI+ Sbjct: 149 FFIFGRGLAFEFRLKAMKSRW--IWDWSFIVGSYLATFSQGISL 190 >UniRef50_B2SHW9 Cytochrome D ubiquinol oxidase subunit II n=2 Tax=Xanthomonas oryzae pv. oryzae RepID=B2SHW9_XANOP Length = 85 Score = 75.4 bits (184), Expect = 3e-12, Method: Composition-based stats. Identities = 35/62 (56%), Positives = 44/62 (70%) Query: 1 MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGN 60 + DY TLR IWWLL+GV+L + + GFD+G+G LLP VA ND ERR+VIN+VG W Sbjct: 5 LLDYTTLRVIWWLLLGVLLSGYAVMSGFDLGVGALLPFVANNDAERRLVINTVGPVWRAQ 64 Query: 61 QV 62 V Sbjct: 65 HV 66 >UniRef50_B2JRW5 Cytochrome bd ubiquinol oxidase subunit I n=1 Tax=Burkholderia phymatum STM815 RepID=B2JRW5_BURP8 Length = 234 Score = 70.4 bits (171), Expect = 1e-10, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 6/104 (5%) Query: 270 LGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDS 329 + V AI R R + A + +F T+FPF +P S+T+ Sbjct: 137 VFALLAAGFVYAIVRRRAFAPLVFALVWFVFALFCVLYTIFPFGLPP------SITIAQG 190 Query: 330 TSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLRRN 373 +S T + +L + +P VL+Y+ ++++ G++T+ R Sbjct: 191 SSPPRTQAFVLGGSSVLVPAVLVYSTFAFWVFRGKVTSARRRDE 234 >UniRef50_Q88HL8 Ubiquinol oxidase subunit II-related protein n=1 Tax=Pseudomonas putida KT2440 RepID=Q88HL8_PSEPK Length = 89 Score = 61.1 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 6/94 (6%) Query: 259 VESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSV 318 P+L + A+ R FL+ F GI+L+P ++P Sbjct: 2 HNLLWFMPVPILVLVTCYGLLRAVARNAHYTPFLLTLAQIFLGYSGLGISLWPNIIPP-- 59 Query: 319 SPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLL 352 S+++W++ + + MLV L LP L Sbjct: 60 ----SISIWEAAAPPQSQGFMLVGTLFILPSSLG 89 >UniRef50_Q5WII1 Cytochrome d ubiquinol oxidase subunit II CydB n=2 Tax=Bacillus RepID=Q5WII1_BACSK Length = 346 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 48/345 (13%), Positives = 106/345 (30%), Gaps = 30/345 (8%) Query: 21 VFMISDGFDMGIGCLLPLVARNDDERRIVI--NSVGAHWEGNQVWLILAGGALFAAWPRV 78 ++ ++ D G G +R + + I N + W+ V+L+L A A +P Sbjct: 17 IYAVAGSIDFGTGFWAMYYSRQNHYKAATIANNFLSPAWKVTNVFLVLLVVAFVALFPGA 76 Query: 79 YAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAF 138 + V LVL L R Y + ++ +M + L P + Sbjct: 77 APTLGTLMIVPFCLVLLLLTIRSAFLVY--AYSTKKYSRMLTLVSGLCGLFIPAILVSIL 134 Query: 139 GNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHL 198 + G + + F + GL++ + + Sbjct: 135 PAAIGGFVVVAGDKQYILVNELFLSPAFYTHVGFGLVTQLFISALFMCDYAKEAGDESTA 194 Query: 199 RSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNF 258 S V L F +A + L+ + +++ + Sbjct: 195 SSYRKNAIFLGPVTLVFAVAAIFT--------------------LIPEAPWMFEKFLSLW 234 Query: 259 VESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSV 318 + LG+ + G P L+ + G P+++ Sbjct: 235 HWYTLSLFAFALGYSALWWRSKTSHLGHPRAALLLIVVQFGLASIAYGSAHLPYLLYP-- 292 Query: 319 SPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWG 363 ++T++D+ +++ +L+ LI L I++ L+ + + Sbjct: 293 ----NVTIYDAFTNETMFRYLLIGFLIGLAILVPVFLYFWRLFFK 333 >UniRef50_A0RL15 Cytochrome d ubiquinol oxidase, subunit II n=81 Tax=Bacillus RepID=A0RL15_BACAH Length = 364 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 46/346 (13%), Positives = 105/346 (30%), Gaps = 36/346 (10%) Query: 21 VFMISDGFDMGIGCLLPLVARNDDERRIVINS-VGAHWEGNQVWLILAGGALFAAWPRVY 79 V+ I D G G + A++ + N + WE +L+ A +P+ Sbjct: 40 VYSILGSIDFGAGFWGMVYAKHPTLAAKLANRYLSPTWEVTNTFLVFVVVAFLGFFPKAA 99 Query: 80 AAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFG 139 + +V ++L+L + R + + +++ + I L+ P + I Sbjct: 100 FTLATVMFVPVMLILVLVAIRSTFMVF--AYSLPKYQHLLRIISGITGLLIPALL-ITVL 156 Query: 140 NLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLR 199 + G + V G +P L L + ++L Sbjct: 157 PVTEGAYITMSEGKEVLLYGKLLS--SPVIYCYMLFGLTSELFLSSLFLADFAREQGSED 214 Query: 200 SQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFV 259 + +R A+++ L+ V +D Sbjct: 215 AYKIYRRNAIILGPATLVTAIIALVVMDPETHWLMQGLIK-------------------- 254 Query: 260 ESPVLWIFPLLGFFCPLLTVMAIYR----GRPGWGFLMASLMQFGVIFTAGITLFPFVMP 315 + P + +L + G P L + G+ P+++ Sbjct: 255 QFPWFTVSIVLFVIGYSSLWWTNKKYSTLGFPRIAVLAVVAQYAFASYAYGVAHLPYIIY 314 Query: 316 SSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 +T++ S ++ T +L++ I + I+L ++ + Sbjct: 315 P------DVTVFTSFTTVETFYALLILYAIGIAILLPGFIFFWNLF 354 >UniRef50_UPI000191363F hypothetical protein Salmonellaentericaenterica_25409 n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. AG3 RepID=UPI000191363F Length = 91 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 5/84 (5%) Query: 123 LVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVIL 182 L +GS++ +++ + + GS LTPF L CG+ + L Sbjct: 13 LFVGSILATFAQ-----GVVVSAVVSGFQVEGRTFSGSQLDWLTPFNLFCGVGLVVTYAL 67 Query: 183 QGGVWLQLKTVGVIHLRSQLATKR 206 G WL +K+ +H R ++ Sbjct: 68 LGATWLIMKSEDPLHSRMCALSRP 91 >UniRef50_B1HTX5 Cytochrome d ubiquinol oxidase subunit II n=2 Tax=Bacillaceae RepID=B1HTX5_LYSSC Length = 341 Score = 55.7 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 44/328 (13%), Positives = 99/328 (30%), Gaps = 31/328 (9%) Query: 6 TLRFIWWLLIGVILVVFMISDGFDMGIGCL---LPLVARNDDERRIVINSVGAHWEGNQV 62 TL + ++ + L ++I D G G L+ +N I+ + WE V Sbjct: 2 TLEILGISVLWIFLFGYVIVASIDFGAGFFNAYSLLIGKNHILTNIIKRYLSPVWEVTNV 61 Query: 63 WLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAG 122 +L+ + +P+ + + + + L L R + + R + Sbjct: 62 FLVFFFVGIVGFFPQTAFYYGTILLIPVSISLVLLAIRGSYYAFESYGT--RGHIGYTLT 119 Query: 123 LVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVIL 182 + L+ P + F G Q + Y + +PF +LS+ V+ Sbjct: 120 YGVAGLLIPASLSVVFAIAGGGYVDLVNGQPVLNY---WTLYTSPFAWSIVVLSIAAVLY 176 Query: 183 QGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNP 242 V+L + ++ ALL +++ + + + Sbjct: 177 ISAVFLTWYAHKANDKEATKLMRKYALLWAAPLMVSALGIMYEMKSINPESYGHMVN--- 233 Query: 243 LMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVI 302 + W+F + + ++ R + G + Sbjct: 234 --------------------LWWMFAISAILFMITVLLLALRKKYGLAVALLIAQFAVAF 273 Query: 303 FTAGITLFPFVMPSSVSPISSLTLWDST 330 F GI +P+++ ++ T Sbjct: 274 FAYGIAQYPYLLYPYLTIYDGFTSTQMA 301 >UniRef50_O34505 Uncharacterized membrane protein ythB n=12 Tax=Bacillales RepID=YTHB_BACSU Length = 346 Score = 54.2 bits (129), Expect = 7e-06, Method: Composition-based stats. Identities = 39/362 (10%), Positives = 99/362 (27%), Gaps = 29/362 (8%) Query: 2 FDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDER--RIVINSVGAHWEG 59 + T I +I + ++ + D G G + + + I + WE Sbjct: 1 MEISTDALIAISIIWGFVFIYAVMATMDFGAGFWSMIYLNKEHMKATDIANRFLSPTWEV 60 Query: 60 NQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMW 119 V+++ ALF+ +P + + ++L L R + A+ RK Sbjct: 61 TNVFIVAIVVALFSFFPGATFVLGTVLLIPGSMILLLLAIRSGFLVF---SNTAKERKTL 117 Query: 120 DAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGM 179 I + P + + G + F + + ++ Sbjct: 118 RYISGISGFIIPAILILVLPVTHGGFIEKTDGIYNLNMSKIFSS-PNAYSFIG--FAILS 174 Query: 180 VILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGP 239 + + L + + A +++AL+ LL + V + Sbjct: 175 TLFLSSLLLADFSNVAEEQDAYRAYRKSALITGPISLLFAVCIMVTMRNEANWLYSGMMN 234 Query: 240 SNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQF 299 +++ + + G+P + + F Sbjct: 235 DF---------------SWIIASFITFVIAGIALFLPNKSFGQNIGKPRLALVAIGIQYF 279 Query: 300 GVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYY 359 + G P+++ +T+ + T + ++ I+ + + Sbjct: 280 LASYAYGRAHLPYMIYP------DVTVMSGFTEPATFRALFATYIVAFIILFPGFFFFWK 333 Query: 360 KM 361 Sbjct: 334 MF 335 >UniRef50_C4L5A7 Cytochrome d ubiquinol oxidase subunit II n=83 Tax=Bacillales RepID=C4L5A7_EXISA Length = 343 Score = 51.9 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 39/315 (12%), Positives = 88/315 (27%), Gaps = 30/315 (9%) Query: 13 LLIGVILVVFMISDGFDMGIGCLLPLVARNDDER---RIVINSVGAHWEGNQVWLILAGG 69 ++ L ++I D G G + R+V + WE V+ + Sbjct: 9 AVLWTFLYGYLIVASIDFGAGFFAFYSRYTKRDHLVNRLVKRYLSPTWEVTNVFFVFFFV 68 Query: 70 ALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLV 129 + +P + V +VL L R + + + ++ L+ Sbjct: 69 GIVGFFPDTAYYYGTALLVPASVVLILLAIRGSFYAFANYGSKES--TLYMFLYGATGLL 126 Query: 130 PPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQ 189 P G T + + +L++ V+ ++L Sbjct: 127 IPASMSTVLTVSQGGF---ITETENGVFFDGAKLFTNFYSWTVVILAIVSVLYISAMFLL 183 Query: 190 LKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAV 249 + ++ AL + ++A ++ G+ + Sbjct: 184 FYADKARDQNAVELVRKWALFWSVPTIIASGLVFFGLK--------------------SQ 223 Query: 250 LPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITL 309 + + + + L F + V + G FLM F F G + Sbjct: 224 AAWHYESILGGNWWWFAMSFLFFVIAVSFVYM--KRNYGIAFLMVMGQFFMAWFGYGYSH 281 Query: 310 FPFVMPSSVSPISSL 324 P+++ + S+ Sbjct: 282 LPYILYPYIDINGSV 296 >UniRef50_C8Q5N5 Putative uncharacterized protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q5N5_9ENTR Length = 81 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 35/67 (52%), Gaps = 6/67 (8%) Query: 297 MQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLW 356 + + ++P+++PS V+ L+ S +S +T ++L+ + + + L+Y +W Sbjct: 5 LITSTLTGIIYAMYPWIIPSQVN------LYQSAASSVTQQVVLIGTAVMILLTLIYHIW 58 Query: 357 SYYKMWG 363 ++ + G Sbjct: 59 PFWIIKG 65 >UniRef50_A7B8V6 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7B8V6_9ACTO Length = 1004 Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 32/259 (12%), Positives = 74/259 (28%), Gaps = 47/259 (18%) Query: 85 GFYVAMILVLCSLFFRPLAFDYRGKIADARWR------------------KMWDAGLVIG 126 G +V +V +L F +++ YR + + R + W L G Sbjct: 52 GLFVVGFIVAAALIFFSMSYAYRHRASSTRGQASASLRAYQKALEPVRRLAFWGVALFFG 111 Query: 127 SLVPPVVFGIAFG----NLLLGVPFAFTPQLRVEYLG--SFWQLLTP-----FPLLCGLL 175 G LL + + Q+ ++ SF+ + P L + Sbjct: 112 -----FTNGARLATEWQTLLQFLNRSSFDQVDPQFGLDISFFVFVLPALKVLVSFLMTVT 166 Query: 176 SLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQD 235 ++ ++ +L + + + L+ C L Sbjct: 167 TIALIAALIVSYLYGTIRLAPRPHASKQARLQSGLMAACLSLFIAA-----------NYW 215 Query: 236 ANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMAS 295 ++ + + P I ++ +L V+A ++G + Sbjct: 216 LGRYELLTSDSGSIHGAMYSDINATLPAHSILAVISGLVAVLFVVAAFKGTWRLPVTGVA 275 Query: 296 LMQFGVIFTAGITLFPFVM 314 + + AG +P ++ Sbjct: 276 VTVIAALVLAGA--YPALV 292 >UniRef50_B5HB50 Integral membrane protein n=10 Tax=Actinomycetales RepID=B5HB50_STRPR Length = 1008 Score = 44.2 bits (103), Expect = 0.007, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 67/208 (32%), Gaps = 24/208 (11%) Query: 121 AGLVIGSLVPPVVFGIAFGN-------LLLGVPF---AFTPQLRVEYLGSFWQLLTPFPL 170 L+ + + ++ G + + + GVPF Q+ V + F L Sbjct: 146 WVLLATTALVGLIAGASATSQWRTWLMWVNGVPFGQKDPQFQMDVAFYAFDLPWYR-FLL 204 Query: 171 LCGLLSLGMVILQGGV----WLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGI 226 G ++ + ++ + + L+ + AT ++L+ L L W+ Sbjct: 205 GFGFAAVVLSLIAAALTHYLYGGLRITSPGARATAAATGHLSVLLGLFVALKAVAYWLDR 264 Query: 227 DGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGR 286 G + + D N +++ P I + C LL ++R Sbjct: 265 YGLAVKSSDFKATDN-------WTGLRYVDANAYLPAKTILFCIAVICALLFFATLWRRT 317 Query: 287 PGWGFLMASLMQFGVIFTAGITLFPFVM 314 + LM I L+P ++ Sbjct: 318 WQLPVIGFGLMVLSAILI--GGLYPAIV 343 >UniRef50_B6B0F2 Cytochrome bd ubiquinol oxidase, subunit II n=1 Tax=Rhodobacterales bacterium HTCC2083 RepID=B6B0F2_9RHOB Length = 61 Score = 43.4 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 6/60 (10%) Query: 305 AGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGR 364 + + + +P LT++++ S +L I L+ L LP +L YT SYY G+ Sbjct: 1 MAYSFYTYAVP------EKLTIFEAASVPESLFINLLGTLFALPAILEYTFLSYYIFRGK 54 >UniRef50_C2BRT8 Possible PTS system, glucose-specific IIBC component n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BRT8_9ACTO Length = 747 Score = 42.6 bits (99), Expect = 0.021, Method: Composition-based stats. Identities = 36/281 (12%), Positives = 59/281 (20%), Gaps = 30/281 (10%) Query: 89 AMILVLCSLFFRPLAFDYRGKIADARWRKMWDA-----GLVIGSLVPPVVFGIA---FGN 140 M +L ++R + R + G +V ++ G+ Sbjct: 194 LMGGILVGFLVAGCWSEFRFRKIAPWARMVSGIPLVVMISATGGVVLGILVGVCYQLLYL 253 Query: 141 LLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRS 200 L+ + + LL PF + G SL V T G S Sbjct: 254 LIAVAVGTAMVSTPGPLGAAIYGLLHPFAEVAGFSSLLNVAPFNLYGRCQTTQGDTLNGS 313 Query: 201 QLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVE 260 + L + + + W Sbjct: 314 YRCFVYGGTQMEGQQALFLAGGYPVVAFGLAALFLVLWLQLKGSNRQYWRIMYWFLIAST 373 Query: 261 SPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSP 320 V P L + F A FGV P + Sbjct: 374 FVVGADKPALYLL-FFAAPGLLLVHAGASAFAYALTAVFGVTIGWAGG------PGMLDL 426 Query: 321 ISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKM 361 L M I + ++L + Y M Sbjct: 427 ---------------LRWMGTGAGILVLLILGVIYAAIYVM 452 >UniRef50_Q8CPN5 Cytochrome d ubiquinol oxidase subunit II-like protein n=7 Tax=Staphylococcus RepID=Q8CPN5_STAES Length = 338 Score = 41.1 bits (95), Expect = 0.065, Method: Composition-based stats. Identities = 40/313 (12%), Positives = 99/313 (31%), Gaps = 30/313 (9%) Query: 14 LIGVILVVFMISDGFDMGIGCLLPLVARNDDERRI---VINSVGAHWEGNQVWLILAGGA 70 ++ V L ++I D G G +E+++ + + WE V+ + Sbjct: 10 VLWVFLFCYIIIASIDFGSGFFALHSKMTGNEKKVNHLIHRYLNPVWEVTNVFFVFFFVG 69 Query: 71 LFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVP 130 +P + V + L + R + + D + W + L+ Sbjct: 70 FIGFFPDSAKYLGTVLLVPGSIALILISIRSSFYAFENYGQDT--KLPWIVLYGLTGLLI 127 Query: 131 PVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQL 190 P A G + + ++++ LL+PF L++ V+ +L Sbjct: 128 PASLATALTISEGGYIYEHGTHIDLDWIQL---LLSPFAWSVVFLAIVSVLYISSGFLTY 184 Query: 191 KTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVL 250 + T++ + ++ ++++ + + Sbjct: 185 YAHKANDQPAYDMTRQWHIFWGPPMIVISLFVFLSLRIQNSDHFRTAIFN---------- 234 Query: 251 PGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLF 310 W+F + F + ++ I++ + G F+M L F G++ Sbjct: 235 ------------YWWMFAISFIFFIIAGLLTIFKKKHGLAFIMVILQMLFAFFGYGMSKL 282 Query: 311 PFVMPSSVSPISS 323 P+++ + S Sbjct: 283 PYLLYPFIKITDS 295 >UniRef50_C4V035 Integral membrane protein WxcO n=2 Tax=Yersinia RepID=C4V035_YERRO Length = 652 Score = 40.7 bits (94), Expect = 0.093, Method: Composition-based stats. Identities = 42/295 (14%), Positives = 96/295 (32%), Gaps = 24/295 (8%) Query: 58 EGNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRK 117 + N WL + A + + S + A +++ L F ++ YR +W+ Sbjct: 97 DFNHFWLYSFLAFISAKFSSLVGIKLS-VHGAFLVLHFLLIFMTISIAYRYY----KWQG 151 Query: 118 MWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSL 177 ++ L+ P+++ F N + + + + + L P L+ + S Sbjct: 152 VFIVVLMT--FFSPILW---FTNKVHTELYTYCLAMSGIMFLYAKKYL-PSALVFAIASA 205 Query: 178 GMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDAN 237 ++ ++ + Q + + V F + + ++ + V+ Q Sbjct: 206 QNPSFALIAFIPFCYRVILQRKVQYSLTEIIIFVATAFFVLAHPIYYFLRFGVMTPQLLA 265 Query: 238 GPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLM 297 G ++ L + P LG +L V +++ + F + Sbjct: 266 GGASLGGNLSTFYIWILDPDLGIIPNWP----LGVLSIILAVFMLFQKKNRQHFYFDGKI 321 Query: 298 QFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLL 352 +I I + SS T +S ++ L + + PI L Sbjct: 322 TLFLILYLFINFY---------AHSSTTNINSGATPGLARYALWYLPLAFPIFLF 367 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.318 0.145 0.429 Lambda K H 0.267 0.0444 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,466,657,636 Number of Sequences: 3077464 Number of extensions: 124395972 Number of successful extensions: 741295 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 533 Number of HSP's successfully gapped in prelim test: 8348 Number of HSP's that attempted gapping in prelim test: 729570 Number of HSP's gapped (non-prelim): 17961 length of query: 378 length of database: 1,040,396,356 effective HSP length: 130 effective length of query: 248 effective length of database: 640,326,036 effective search space: 158800856928 effective search space used: 158800856928 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.1 bits) S2: 94 (40.7 bits)