18/01/2012 00:48:40 : INFO  : Run start: Wed Jan 18 00:48:38 GMT 2012
18/01/2012 00:48:52 : INFO  : Initialised job
18/01/2012 00:48:56 : INFO  : Renaming log file 'phyre2_20120118_004837.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/19a89f743c2d7629/phyre_20120118_004837.log'
18/01/2012 00:48:59 : INFO  : Initialised job:
Sequence
>batch____
MNTRQLLSVGIDIGTTTTQVIFSRLELVNRAAVSQVPRYEFIKREISWQSPVFFTPVDKQ
GGLKEAELKTLILEQYHAAGIEPESVDSGAIIITGESAKTRNARPAVMALSQSLGDFVVA
SAGPHLESVIAGHGAGAQTLSEQRLCRVLNIDIGGGTANYALFDAGKISGTACLNVGGRL
LETDSHGRVVYAHKPGQMIVDECFGAGTDARSLTGAQLVQVTRRMAELIVEVIDGTLSPL
AQALMQTGLLPAGVTPEIITLSGGVGECYRHQPADPFCFADIGPLLATALHDHPRLREMN
VQFPAQTVRATVIGAGAHTLSLSGSTIWLEGVQLPLRNLPVAIPIDETDLVGAWQQALIQ
LDLDPKTDAYVLALPASLPVRYAAVLTVINALVDFVARFPNPHPLLVVAGQDFGKALGML
LRPQLQQLPLAVIDEVIVRAGDYIDIGTPLFGGSVVPVTVKSLAFPS

18/01/2012 00:49:01 : INFO  : Checked sequence
18/01/2012 00:49:08 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 00:49:11 : INFO  : PSI-BLAST 3 iterations
18/01/2012 00:51:31 : INFO  : PSI-BLAST 5 iterations
18/01/2012 00:53:53 : INFO  : Finished PSI-BLAST
18/01/2012 00:53:57 : INFO  : Running Buildali to generate a3m file
18/01/2012 01:04:57 : INFO  : Converting to HMM
18/01/2012 01:05:03 : INFO  : Calibrating HMM
18/01/2012 01:05:33 : INFO  : Searching HMM database
18/01/2012 01:15:18 : INFO  : Finished buildali
18/01/2012 01:15:21 : INFO  : Predicting secondary structure
18/01/2012 01:15:34 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 01:15:36 : INFO  : Predicting Disordered regions
18/01/2012 01:15:43 : INFO  : Predicted Disorder (Disopred)
18/01/2012 01:15:45 : INFO  : Running memsat_svm check
18/01/2012 01:19:45 : INFO  : Running memsat_svm full
18/01/2012 01:33:35 : INFO  : Predicted Transmembrane (memsat_svm) ID '19a89f743c2d7629'
18/01/2012 01:33:40 : INFO  : Initialising fold library search
18/01/2012 01:33:47 : INFO  : Initialised search input
18/01/2012 01:33:52 : INFO  : Building Ensemble models
18/01/2012 01:33:59 : INFO  : Building hh.c3h1qB_.model.1.pdb
18/01/2012 01:34:31 : INFO  : Building hh.c2floA_.model.2.pdb
18/01/2012 01:34:55 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/19a89f743c2d7629/hh.c2floA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/19a89f743c2d7629/c2floA_.2.pdb
18/01/2012 01:35:03 : INFO  : Building hh.c3hi0B_.model.3.pdb
18/01/2012 01:35:27 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/19a89f743c2d7629/hh.c3hi0B_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/19a89f743c2d7629/c3hi0B_.3.pdb
18/01/2012 01:35:35 : INFO  : Building hh.c1t6dB_.model.4.pdb
18/01/2012 01:35:58 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/19a89f743c2d7629/hh.c1t6dB_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/19a89f743c2d7629/c1t6dB_.4.pdb
18/01/2012 01:36:06 : INFO  : Building hh.c3cerD_.model.5.pdb
18/01/2012 01:36:31 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/19a89f743c2d7629/hh.c3cerD_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/19a89f743c2d7629/c3cerD_.5.pdb
18/01/2012 01:36:38 : INFO  : Building hh.c3mdqA_.model.6.pdb
18/01/2012 01:37:03 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/19a89f743c2d7629/hh.c3mdqA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/19a89f743c2d7629/c3mdqA_.6.pdb
18/01/2012 01:37:11 : INFO  : Building hh.d1jcea2.model.7.pdb
18/01/2012 01:37:35 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/19a89f743c2d7629/hh.d1jcea2.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/19a89f743c2d7629/d1jcea2.19.pdb
18/01/2012 01:37:44 : INFO  : Building hh.c3mixA_.model.8.pdb
18/01/2012 01:38:07 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/19a89f743c2d7629/hh.c3mixA_.model.8.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/19a89f743c2d7629/c3mixA_.119.pdb
18/01/2012 01:38:15 : INFO  : Building hh.c3a5iB_.model.9.pdb
18/01/2012 01:38:39 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/19a89f743c2d7629/hh.c3a5iB_.model.9.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/19a89f743c2d7629/c3a5iB_.121.pdb
18/01/2012 01:38:46 : INFO  : Building c3h1qB_.1.pdb
18/01/2012 01:39:15 : INFO  : Building c2floA_.2.pdb
18/01/2012 01:39:45 : INFO  : Building c3hi0B_.3.pdb
18/01/2012 01:40:13 : INFO  : Building c1t6dB_.4.pdb
18/01/2012 01:40:39 : INFO  : Building c3cerD_.5.pdb
18/01/2012 01:41:07 : INFO  : Building c3mdqA_.6.pdb
18/01/2012 01:41:37 : INFO  : Building c2d0oA_.7.pdb
18/01/2012 01:42:04 : INFO  : Building c1e4gT_.8.pdb
18/01/2012 01:42:30 : INFO  : Building c1jcgA_.9.pdb
18/01/2012 01:42:54 : INFO  : Building c2v7yA_.10.pdb
18/01/2012 01:43:20 : INFO  : Building c3iucC_.11.pdb
18/01/2012 01:43:49 : INFO  : Building c1dkgD_.12.pdb
18/01/2012 01:44:18 : INFO  : Building c3d2fC_.13.pdb
18/01/2012 01:44:45 : INFO  : Building c2ychA_.14.pdb
18/01/2012 01:45:12 : INFO  : Building c2v7zA_.15.pdb
18/01/2012 01:45:37 : INFO  : Building c2khoA_.16.pdb
18/01/2012 01:46:01 : INFO  : Building c3dwlB_.17.pdb
18/01/2012 01:46:26 : INFO  : Building c1hpmA_.18.pdb
18/01/2012 01:46:50 : INFO  : Building d1jcea2.19.pdb
18/01/2012 01:47:15 : INFO  : Building c1o1f4_.20.pdb
18/01/2012 01:51:28 : INFO  : Finished HH model building
18/01/2012 01:51:30 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 01:53:05 : INFO  : html domain output complete ID '19a89f743c2d7629'
18/01/2012 03:12:01 : INFO  : Run end  : Wed Jan 18 03:11:59 GMT 2012
