Phyre 2 alignment of P76551 with c2aujD_

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Job Description | P76551
Confidence | 37.22% | Date | Thu Jan 5 12:24:28 GMT 2012
Rank | 132 | Aligned Residues | 24
% Identity | 38% | Template | c2aujD_
PDB info | PDB header:transferase | Chain: D: PDB Molecule:dna-directed rna polymerase beta' chain; | PDBTitle: structure of thermus aquaticus rna polymerase beta'-subunit2 insert
Resolution | 2.70 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 434 | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | D | E | V | I | V | R | A | G | D | Y | I | D | I | G | T | P | L | F | G | G | S | V | V | P
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | D | D | V | E | V | T | T | G | D | R | V | A | P | G | D | V | L | A | D | G | G | K | V | K
Template Known Secondary structure |  | S |  | B | S |  |  | T | T |  |  | B |  | T | T |  |  |  |  | T | G | G | G |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 405 | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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