Phyre 2 Results for Q5H775

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Email | l.a.kelley@imperial.ac.uk
Description | Q5H775
Date | Thu Jan 5 12:37:19 GMT 2012
Unique Job ID | 197685525752e64a

Summary |

Top model
Image coloured by rainbow N → C terminus
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Model (left) based on template c2bnoA_
Top template information
PDB header:oxidoreductase Chain: A: PDB Molecule:epoxidase; PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis.
Confidence and coverage
Confidence: | 100.0% | Coverage: | 95%
175 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | S | D | E | G | L | A | P | G | K | R | L | S | E | I | R | Q | Q | Q | G | L | S | Q | R | R | A | A | E | L | S | G | L | T | H | S | A | I | S | T | I | E | Q | D | K | V | S | P | A | I | S | T | L | Q | K | L | L | K | V | Y | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | L | S | L | S | E | F | F | S | E | P | E | K | P | D | E | P | Q | V | V | I | N | Q | D | D | L | I | E | M | G | S | Q | G | V | S | M | K | L | V | H | N | G | N | P | N | R | T | L | A | M | I | F | E | T | Y | Q | P | G | T | T | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | G | E | R | I | K | H | Q | G | E | E | I | G | T | V | L | E | G | E | I | V | L | T | I | N | G | Q | D | Y | H | L | V | A | G | Q | S | Y | A | I | N | T | G | I | P | H | S | F | S | N | T | S | A | G | I | C | R | I | I | S | A | H
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | .
Sequence |  | T | P | T | T | F
Secondary structure |  |  |  |  |  |
SS confidence |  |  |  |  |  |
Disorder |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2bnoA_ |

### PDB 2bno chain A

Region: 6 - 180
Aligned: 175
Modelled: 175
Confidence: 100.0%
Identity: 18%
PDB header:oxidoreductase
Chain: A: PDB Molecule:epoxidase;
PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis.

Phyre2
2 |
| c1y9qA_ |

### PDB 1y9q chain A

Region: 2 - 182
Aligned: 175
Modelled: 179
Confidence: 100.0%
Identity: 18%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, hth_3 family;
PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae

Phyre2
3 |
| c3ivpD_ |

### PDB 3ivp chain D

Region: 8 - 74
Aligned: 67
Modelled: 67
Confidence: 99.7%
Identity: 22%
PDB header:dna binding protein
Chain: D: PDB Molecule:putative transposon-related dna-binding protein;
PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630.

Phyre2
4 |
| d2bnma2 |

### PDB 2bnm chain A domain 2

Region: 71 - 180
Aligned: 110
Modelled: 110
Confidence: 99.7%
Identity: 16%
Fold: Double-stranded beta-helix
Superfamily: RmlC-like cupins
Family: TM1459-like

Phyre2
5 |
| c2kpjA_ |

### PDB 2kpj chain A

Region: 1 - 85
Aligned: 85
Modelled: 85
Confidence: 99.7%
Identity: 14%
PDB header:transcription regulator
Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa;
PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a

Phyre2
6 |
| c3op9A_ |

### PDB 3op9 chain A

Region: 7 - 75
Aligned: 69
Modelled: 69
Confidence: 99.6%
Identity: 20%
PDB header:transcription regulator
Chain: A: PDB Molecule:pli0006 protein;
PDBTitle: crystal structure of transcriptional regulator from listeria innocua

Phyre2
7 |
| c2ewtA_ |

### PDB 2ewt chain A

Region: 2 - 67
Aligned: 66
Modelled: 66
Confidence: 99.6%
Identity: 29%
PDB header:dna binding protein
Chain: A: PDB Molecule:putative dna-binding protein;
PDBTitle: crystal structure of the dna-binding domain of bldd

Phyre2
8 |
| d1y9qa2 |

### PDB 1y9q chain A domain 2

Region: 89 - 182
Aligned: 94
Modelled: 94
Confidence: 99.6%
Identity: 14%
Fold: Double-stranded beta-helix
Superfamily: RmlC-like cupins
Family: Probable transcriptional regulator VC1968, C-terminal domain

Phyre2
9 |
| d1y7ya1 |

### PDB 1y7y chain A domain 1

Region: 6 - 67
Aligned: 62
Modelled: 62
Confidence: 99.6%
Identity: 32%
Fold: lambda repressor-like DNA-binding domains
Superfamily: lambda repressor-like DNA-binding domains
Family: SinR domain-like

Phyre2
10 |
| c3lisB_ |

### PDB 3lis chain B

Region: 8 - 69
Aligned: 62
Modelled: 62
Confidence: 99.6%
Identity: 24%
PDB header:transcription
Chain: B: PDB Molecule:csp231i c protein;
PDBTitle: crystal structure of the restriction-modification controller protein2 c.csp231i (monoclinic form)

Phyre2
11 |
| c3clcC_ |

### PDB 3clc chain C

Region: 7 - 67
Aligned: 61
Modelled: 61
Confidence: 99.6%
Identity: 28%
PDB header:transcription regulator/dna
Chain: C: PDB Molecule:regulatory protein;
PDBTitle: crystal structure of the restriction-modification controller protein2 c.esp1396i tetramer in complex with its natural 35 base-pair operator

Phyre2
12 |
| c1b0nA_ |

### PDB 1b0n chain A

Region: 8 - 75
Aligned: 68
Modelled: 68
Confidence: 99.6%
Identity: 28%
PDB header:transcription regulator
Chain: A: PDB Molecule:protein (sinr protein);
PDBTitle: sinr protein/sini protein complex

Phyre2
13 |
| d1y9qa1 |

### PDB 1y9q chain A domain 1

Region: 5 - 73
Aligned: 69
Modelled: 69
Confidence: 99.6%
Identity: 29%
Fold: lambda repressor-like DNA-binding domains
Superfamily: lambda repressor-like DNA-binding domains
Family: Probable transcriptional regulator VC1968, N-terminal domain

Phyre2
14 |
| d2b5aa1 |

### PDB 2b5a chain A domain 1

Region: 1 - 74
Aligned: 74
Modelled: 74
Confidence: 99.6%
Identity: 27%
Fold: lambda repressor-like DNA-binding domains
Superfamily: lambda repressor-like DNA-binding domains
Family: SinR domain-like

Phyre2
15 |
| c3f52A_ |

### PDB 3f52 chain A

Region: 7 - 69
Aligned: 63
Modelled: 63
Confidence: 99.6%
Identity: 24%
PDB header:transcription activator
Chain: A: PDB Molecule:clp gene regulator (clgr);
PDBTitle: crystal structure of the clp gene regulator clgr from c. glutamicum

Phyre2
16 |
| c3mlfC_ |

### PDB 3mlf chain C

Region: 8 - 71
Aligned: 64
Modelled: 62
Confidence: 99.6%
Identity: 25%
PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator;
PDBTitle: putative transcriptional regulator from staphylococcus aureus.

Phyre2
17 |
| d1x57a1 |

### PDB 1x57 chain A domain 1

Region: 5 - 79
Aligned: 75
Modelled: 75
Confidence: 99.6%
Identity: 24%
Fold: lambda repressor-like DNA-binding domains
Superfamily: lambda repressor-like DNA-binding domains
Family: EDF1-like

Phyre2
18 |
| c3b7hA_ |

### PDB 3b7h chain A

Region: 1 - 74
Aligned: 74
Modelled: 74
Confidence: 99.6%
Identity: 30%
PDB header:structural protein
Chain: A: PDB Molecule:prophage lp1 protein 11;
PDBTitle: crystal structure of the prophage lp1 protein 11

Phyre2
19 |
| d1rioa_ |

### PDB 1rio chain A

Region: 3 - 67
Aligned: 65
Modelled: 65
Confidence: 99.6%
Identity: 18%
Fold: lambda repressor-like DNA-binding domains
Superfamily: lambda repressor-like DNA-binding domains
Family: Phage repressors

Phyre2
20 |
| c3f6wE_ |

### PDB 3f6w chain E

Region: 7 - 75
Aligned: 69
Modelled: 69
Confidence: 99.6%
Identity: 20%
PDB header:dna binding protein
Chain: E: PDB Molecule:xre-family like protein;
PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2bnoA_ |
|  | 100.0 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:epoxidase; PDBTitle: the structure of hydroxypropylphosphonic acid epoxidase2 from s. wedmorenis.
2 | c1y9qA_ |
|  | 100.0 | 18 | PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, hth_3 family; PDBTitle: crystal structure of hth_3 family transcriptional regulator2 from vibrio cholerae
3 | c3ivpD_ |
|  | 99.7 | 22 | PDB header:dna binding protein Chain: D: PDB Molecule:putative transposon-related dna-binding protein; PDBTitle: the structure of a possible transposon-related dna-binding protein2 from clostridium difficile 630.
4 | d2bnma2 |
|  | 99.7 | 16 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like
5 | c2kpjA_ |
|  | 99.7 | 14 | PDB header:transcription regulator Chain: A: PDB Molecule:sos-response transcriptional repressor, lexa; PDBTitle: solution structure of protein sos-response transcriptional2 repressor, lexa from eubacterium rectale. northeast3 structural genomics consortium target err9a
6 | c3op9A_ |
|  | 99.6 | 20 | PDB header:transcription regulator Chain: A: PDB Molecule:pli0006 protein; PDBTitle: crystal structure of transcriptional regulator from listeria innocua
7 | c2ewtA_ |
|  | 99.6 | 29 | PDB header:dna binding protein Chain: A: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of the dna-binding domain of bldd
8 | d1y9qa2 |
|  | 99.6 | 14 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Probable transcriptional regulator VC1968, C-terminal domain
9 | d1y7ya1 |
|  | 99.6 | 32 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like
10 | c3lisB_ |
|  | 99.6 | 24 | PDB header:transcription Chain: B: PDB Molecule:csp231i c protein; PDBTitle: crystal structure of the restriction-modification controller protein2 c.csp231i (monoclinic form)
11 | c3clcC_ |
|  | 99.6 | 28 | PDB header:transcription regulator/dna Chain: C: PDB Molecule:regulatory protein; PDBTitle: crystal structure of the restriction-modification controller protein2 c.esp1396i tetramer in complex with its natural 35 base-pair operator
12 | c1b0nA_ |
|  | 99.6 | 28 | PDB header:transcription regulator Chain: A: PDB Molecule:protein (sinr protein); PDBTitle: sinr protein/sini protein complex
13 | d1y9qa1 |
|  | 99.6 | 29 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Probable transcriptional regulator VC1968, N-terminal domain
14 | d2b5aa1 |
|  | 99.6 | 27 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like
15 | c3f52A_ |
|  | 99.6 | 24 | PDB header:transcription activator Chain: A: PDB Molecule:clp gene regulator (clgr); PDBTitle: crystal structure of the clp gene regulator clgr from c. glutamicum
16 | c3mlfC_ |
|  | 99.6 | 25 | PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulator; PDBTitle: putative transcriptional regulator from staphylococcus aureus.
17 | d1x57a1 |
|  | 99.6 | 24 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:EDF1-like
18 | c3b7hA_ |
|  | 99.6 | 30 | PDB header:structural protein Chain: A: PDB Molecule:prophage lp1 protein 11; PDBTitle: crystal structure of the prophage lp1 protein 11
19 | d1rioa_ |
|  | 99.6 | 18 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors
20 | c3f6wE_ |
|  | 99.6 | 20 | PDB header:dna binding protein Chain: E: PDB Molecule:xre-family like protein; PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000
21 | d2r1jl1 |
| not modelled | 99.6 | 22 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors
22 | c2gu9B_ |
| not modelled | 99.6 | 20 | PDB header:immune system Chain: B: PDB Molecule:tetracenomycin polyketide synthesis protein; PDBTitle: crystal structure of xc5357 from xanthomonas campestris: a2 putative tetracenomycin polyketide synthesis protein3 adopting a novel cupin subfamily structure
23 | c3bdnB_ |
| not modelled | 99.6 | 13 | PDB header:transcription/dna Chain: B: PDB Molecule:lambda repressor; PDBTitle: crystal structure of the lambda repressor
24 | c3bs3A_ |
| not modelled | 99.6 | 19 | PDB header:dna binding protein Chain: A: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of a putative dna-binding protein from bacteroides2 fragilis
25 | d1r69a_ |
| not modelled | 99.6 | 26 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors
26 | d1adra_ |
| not modelled | 99.6 | 20 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors
27 | c3omtA_ |
| not modelled | 99.6 | 15 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: putative antitoxin component, chu_2935 protein, from xre family from2 prevotella buccae.
28 | d2o38a1 |
| not modelled | 99.5 | 16 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE1354
29 | c2o38A_ |
| not modelled | 99.5 | 16 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: putative xre family transcriptional regulator
30 | d2ofya1 |
| not modelled | 99.5 | 24 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like
31 | d1b0na2 |
| not modelled | 99.5 | 29 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like
32 | c2jvlA_ |
| not modelled | 99.5 | 19 | PDB header:transcription Chain: A: PDB Molecule:trmbf1; PDBTitle: nmr structure of the c-terminal domain of mbf1 of trichoderma reesei
33 | c3kxaD_ |
| not modelled | 99.5 | 31 | PDB header:structural genomics, unknown function Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of ngo0477 from neisseria gonorrhoeae
34 | d1sq8a_ |
| not modelled | 99.5 | 25 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors
35 | d2croa_ |
| not modelled | 99.5 | 18 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors
36 | d2icta1 |
| not modelled | 99.5 | 23 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like
37 | c3i7dB_ |
| not modelled | 99.5 | 19 | PDB header:isomerase Chain: B: PDB Molecule:sugar phosphate isomerase; PDBTitle: crystal structure of sugar phosphate isomerase from a cupin2 superfamily spo2919 from silicibacter pomeroyi (yp_168127.1) from3 silicibacter pomeroyi dss-3 at 2.30 a resolution
38 | c3h7yA_ |
| not modelled | 99.5 | 18 | PDB header:biosynthetic protein Chain: A: PDB Molecule:bacilysin biosynthesis protein bacb; PDBTitle: crystal structure of bacb, an enzyme involved in bacilysin synthesis,2 in tetragonal form
39 | c2ebyA_ |
| not modelled | 99.5 | 20 | PDB header:transcription Chain: A: PDB Molecule:putative hth-type transcriptional regulator ybaq; PDBTitle: crystal structure of a hypothetical protein from e. coli
40 | d1llib_ |
| not modelled | 99.5 | 27 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors
41 | d1lmb3_ |
| not modelled | 99.5 | 25 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors
42 | d1utxa_ |
| not modelled | 99.5 | 24 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like
43 | d1sq4a_ |
| not modelled | 99.5 | 18 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like
44 | d1sefa_ |
| not modelled | 99.5 | 11 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like
45 | c1sefA_ |
| not modelled | 99.5 | 11 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of cupin domain protein ef2996 from enterococcus2 faecalis
46 | c2oa2A_ |
| not modelled | 99.5 | 20 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:bh2720 protein; PDBTitle: crystal structure of bh2720 (10175341) from bacillus halodurans at2 1.41 a resolution
47 | c2ef8A_ |
| not modelled | 99.5 | 29 | PDB header:transcription regulator Chain: A: PDB Molecule:putative transcription factor; PDBTitle: crystal structure of c.ecot38is
48 | c3cecA_ |
| not modelled | 99.5 | 17 | PDB header:transcription Chain: A: PDB Molecule:putative antidote protein of plasmid maintenance system; PDBTitle: crystal structure of a putative antidote protein of plasmid2 maintenance system (npun_f2943) from nostoc punctiforme pcc 73102 at3 1.60 a resolution
49 | c2xcjB_ |
| not modelled | 99.5 | 17 | PDB header:viral protein Chain: B: PDB Molecule:c protein; PDBTitle: crystal structure of p2 c, the immunity repressor of2 temperate e. coli phage p2
50 | d1sfna_ |
| not modelled | 99.5 | 13 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like
51 | c3eusB_ |
| not modelled | 99.5 | 19 | PDB header:dna binding protein Chain: B: PDB Molecule:dna-binding protein; PDBTitle: the crystal structure of the dna binding protein from silicibacter2 pomeroyi
52 | d2a6ca1 |
| not modelled | 99.5 | 25 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE1354
53 | c3pxpA_ |
| not modelled | 99.5 | 25 | PDB header:transcription regulator Chain: A: PDB Molecule:helix-turn-helix domain protein; PDBTitle: crystal structure of a pas and dna binding domain containing protein2 (caur_2278) from chloroflexus aurantiacus j-10-fl at 2.30 a3 resolution
54 | d1y3ta1 |
| not modelled | 99.5 | 19 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like
55 | c3l2hD_ |
| not modelled | 99.5 | 19 | PDB header:isomerase Chain: D: PDB Molecule:putative sugar phosphate isomerase; PDBTitle: crystal structure of putative sugar phosphate isomerase (afe_0303)2 from acidithiobacillus ferrooxidans atcc 23270 at 1.85 a resolution
56 | c3dnvB_ |
| not modelled | 99.5 | 26 | PDB header:transcription/dna Chain: B: PDB Molecule:hth-type transcriptional regulator hipb; PDBTitle: mdt protein
57 | d1vj2a_ |
| not modelled | 99.5 | 16 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1459-like
58 | d1rc6a_ |
| not modelled | 99.5 | 14 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:YlbA-like
59 | c3cewA_ |
| not modelled | 99.5 | 19 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized cupin protein; PDBTitle: crystal structure of a cupin protein (bf4112) from bacteroides2 fragilis. northeast structural genomics consortium target bfr205
60 | d1o4ta_ |
| not modelled | 99.5 | 24 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like
61 | c3trbA_ |
| not modelled | 99.4 | 20 | PDB header:dna binding protein Chain: A: PDB Molecule:virulence-associated protein i; PDBTitle: structure of an addiction module antidote protein of a higa (higa)2 family from coxiella burnetii
62 | d1v70a_ |
| not modelled | 99.4 | 20 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like
63 | c3h8uA_ |
| not modelled | 99.4 | 22 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized conserved protein with double-stranded PDBTitle: crystal structure of uncharacterized conserved protein with double-2 stranded beta-helix domain (yp_001338853.1) from klebsiella3 pneumoniae subsp. pneumoniae mgh 78578 at 1.80 a resolution
64 | c3jzvA_ |
| not modelled | 99.4 | 13 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein rru_a2000; PDBTitle: crystal structure of rru_a2000 from rhodospirillum rubrum: a cupin-22 domain.
65 | c3t76A_ |
| not modelled | 99.4 | 8 | PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator vanug; PDBTitle: crystal structure of transcriptional regulator vanug, form ii
66 | c2vpvA_ |
| not modelled | 99.4 | 9 | PDB header:cell cycle Chain: A: PDB Molecule:protein mif2; PDBTitle: dimerization domain of mif2p
67 | c2axzC_ |
| not modelled | 99.4 | 22 | PDB header:transcription Chain: C: PDB Molecule:prgx; PDBTitle: crystal structure of prgx/ccf10 complex
68 | d1lr5a_ |
| not modelled | 99.4 | 21 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein
69 | c3ht2A_ |
| not modelled | 99.4 | 24 | PDB header:lyase Chain: A: PDB Molecule:remf protein; PDBTitle: zink containing polyketide cyclase remf from streptomyces2 resistomycificus
70 | c2fjrB_ |
| not modelled | 99.4 | 11 | PDB header:transcription regulator Chain: B: PDB Molecule:repressor protein ci; PDBTitle: crystal structure of bacteriophage 186
71 | c3ibmB_ |
| not modelled | 99.4 | 12 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila
72 | c3kgzA_ |
| not modelled | 99.4 | 10 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: crystal structure of a cupin 2 conserved barrel domain protein from2 rhodopseudomonas palustris
73 | c2qfcB_ |
| not modelled | 99.3 | 27 | PDB header:transcription regulation Chain: B: PDB Molecule:plcr protein; PDBTitle: crystal structure of bacillus thuringiensis plcr complexed with papr
74 | c2wusR_ |
| not modelled | 99.3 | 15 | PDB header:structural protein Chain: R: PDB Molecule:putative uncharacterized protein; PDBTitle: bacterial actin mreb assembles in complex with cell shape2 protein rodz
75 | d2b8ma1 |
| not modelled | 99.3 | 13 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:MJ0764-like
76 | d2f4pa1 |
| not modelled | 99.3 | 17 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like
77 | c2pfwB_ |
| not modelled | 99.3 | 18 | PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a rmlc-like cupin (sfri_3105) from shewanella2 frigidimarina ncimb 400 at 1.90 a resolution
78 | d1juha_ |
| not modelled | 99.3 | 12 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Quercetin 2,3-dioxygenase-like
79 | c3fymA_ |
| not modelled | 99.3 | 13 | PDB header:dna binding protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the 1a structure of ymfm, a putative dna-binding membrane2 protein from staphylococcus aureus
80 | c2o8qA_ |
| not modelled | 99.3 | 18 | PDB header:metal binding protein Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a protein with a cupin-like fold and unknown2 function (bxe_c0505) from burkholderia xenovorans lb400 at 1.55 a3 resolution
81 | c2vqaC_ |
| not modelled | 99.3 | 15 | PDB header:metal-binding protein Chain: C: PDB Molecule:sll1358 protein; PDBTitle: protein-folding location can regulate mn versus cu- or zn-2 binding. crystal structure of mnca.
82 | c3fjsC_ |
| not modelled | 99.3 | 17 | PDB header:biosynthetic protein Chain: C: PDB Molecule:uncharacterized protein with rmlc-like cupin fold; PDBTitle: crystal structure of a putative biosynthetic protein with rmlc-like2 cupin fold (reut_b4087) from ralstonia eutropha jmp134 at 1.90 a3 resolution
83 | c2q30C_ |
| not modelled | 99.2 | 17 | PDB header:unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a rmlc-like cupin protein (dde_2303) from2 desulfovibrio desulfuricans subsp. at 1.94 a resolution
84 | c2ppxA_ |
| not modelled | 99.2 | 18 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1735; PDBTitle: crystal structure of a hth xre-family like protein from agrobacterium2 tumefaciens
85 | d2ppxa1 |
| not modelled | 99.2 | 18 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like
86 | d1j58a_ |
| not modelled | 99.1 | 16 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein
87 | c3fmyA_ |
| not modelled | 99.1 | 23 | PDB header:dna binding protein Chain: A: PDB Molecule:hth-type transcriptional regulator mqsa PDBTitle: structure of the c-terminal domain of the e. coli protein2 mqsa (ygit/b3021)
88 | c2fqpD_ |
| not modelled | 99.1 | 20 | PDB header:metal binding protein Chain: D: PDB Molecule:hypothetical protein bp2299; PDBTitle: crystal structure of a cupin domain (bp2299) from bordetella pertussis2 tohama i at 1.80 a resolution
89 | c3es1A_ |
| not modelled | 99.1 | 24 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of protein with a cupin-like fold and unknown2 function (yp_001165807.1) from novosphingobium aromaticivorans dsm3 12444 at 1.91 a resolution
90 | c2ozjB_ |
| not modelled | 99.1 | 16 | PDB header:unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel; PDBTitle: crystal structure of a cupin superfamily protein (dsy2733) from2 desulfitobacterium hafniense dcb-2 at 1.60 a resolution
91 | c2d40C_ |
| not modelled | 99.0 | 14 | PDB header:oxidoreductase Chain: C: PDB Molecule:putative gentisate 1,2-dioxygenase; PDBTitle: crystal structure of z3393 from escherichia coli o157:h7
92 | c3rnsA_ |
| not modelled | 99.0 | 19 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:cupin 2 conserved barrel domain protein; PDBTitle: cupin 2 conserved barrel domain protein from leptotrichia buccalis
93 | d1j3pa_ |
| not modelled | 99.0 | 13 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI
94 | c2oziA_ |
| not modelled | 99.0 | 22 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa4178; PDBTitle: structural genomics, the crystal structure of a putative2 protein rpa4178 from rhodopseudomonas palustris cga009
95 | d1yhfa1 |
| not modelled | 99.0 | 21 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:TM1287-like
96 | c2xlfA_ |
| not modelled | 99.0 | 17 | PDB header:metal binding protein Chain: A: PDB Molecule:sll1785 protein; PDBTitle: structure and metal-loading of a soluble periplasm cupro-protein:2 apo-cuca-closed (semet)
97 | d3bu7a1 |
| not modelled | 99.0 | 18 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like
98 | c3bu7A_ |
| not modelled | 99.0 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:gentisate 1,2-dioxygenase; PDBTitle: crystal structure and biochemical characterization of gdosp,2 a gentisate 1,2-dioxygenase from silicibacter pomeroyi
99 | d1x82a_ |
| not modelled | 98.9 | 14 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Glucose-6-phosphate isomerase, GPI
100 | d2d40a1 |
| not modelled | 98.9 | 14 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like
101 | d2et1a1 |
| not modelled | 98.9 | 24 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein
102 | c3lwcA_ |
| not modelled | 98.9 | 15 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of structural genomics, unknown function2 (yp_766765.1) from rhizobium leguminosarum bv. viciae 3841 at 1.40 a3 resolution
103 | d2phda1 |
| not modelled | 98.9 | 20 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Gentisate 1,2-dioxygenase-like
104 | d1dgwa_ |
| not modelled | 98.9 | 19 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein
105 | c3d82A_ |
| not modelled | 98.9 | 22 | PDB header:metal binding protein Chain: A: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of a cupin-2 domain containing protein (sfri_3543)2 from shewanella frigidimarina ncimb 400 at 2.05 a resolution
106 | c3gn5B_ |
| not modelled | 98.8 | 24 | PDB header:dna binding protein Chain: B: PDB Molecule:hth-type transcriptional regulator mqsa (ygit/b3021); PDBTitle: structure of the e. coli protein mqsa (ygit/b3021)
107 | d1yfua1 |
| not modelled | 98.8 | 18 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like
108 | d1uika1 |
| not modelled | 98.7 | 19 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein
109 | c2i45C_ |
| not modelled | 98.7 | 12 | PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein nmb1881 from neisseria meningitidis
110 | d1uija1 |
| not modelled | 98.6 | 17 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein
111 | d1fxza1 |
| not modelled | 98.6 | 16 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein
112 | c1fxzC_ |
| not modelled | 98.5 | 15 | PDB header:plant protein Chain: C: PDB Molecule:glycinin g1; PDBTitle: crystal structure of soybean proglycinin a1ab1b homotrimer
113 | c3eqeB_ |
| not modelled | 98.5 | 20 | PDB header:oxidoreductase Chain: B: PDB Molecule:putative cystein deoxygenase; PDBTitle: crystal structure of the yubc protein from bacillus2 subtilis. northeast structural genomics consortium target3 sr112.
114 | c3bcwB_ |
| not modelled | 98.5 | 16 | PDB header:unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf861 family protein with a rmlc-like cupin2 fold (bb1179) from bordetella bronchiseptica rb50 at 1.60 a3 resolution
115 | c3kscD_ |
| not modelled | 98.5 | 14 | PDB header:plant protein Chain: D: PDB Molecule:lega class; PDBTitle: crystal structure of pea prolegumin, an 11s seed globulin2 from pisum sativum l.
116 | c3kglB_ |
| not modelled | 98.5 | 13 | PDB header:plant protein Chain: B: PDB Molecule:cruciferin; PDBTitle: crystal structure of procruciferin, 11s globulin from2 brassica napus
117 | d2phla2 |
| not modelled | 98.4 | 16 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein
118 | c3qacA_ |
| not modelled | 98.3 | 13 | PDB header:plant protein Chain: A: PDB Molecule:11s globulin seed storage protein; PDBTitle: structure of amaranth 11s proglobulin seed storage protein from2 amaranthus hypochondriacus l.
119 | c2d5fB_ |
| not modelled | 98.3 | 15 | PDB header:plant protein Chain: B: PDB Molecule:glycinin a3b4 subunit; PDBTitle: crystal structure of recombinant soybean proglycinin a3b4 subunit, its2 comparison with mature glycinin a3b4 subunit, responsible for hexamer3 assembly
120 | d1fxza2 |
| not modelled | 98.3 | 13 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0