Phyre 2 alignment of Q5H775 with c1l9uH_

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Job Description | Q5H775
Confidence | 78.61% | Date | Thu Jan 5 12:37:19 GMT 2012
Rank | 339 | Aligned Residues | 23
% Identity | 22% | Template | c1l9uH_
PDB info | PDB header:transcription | Chain: H: PDB Molecule:sigma factor siga; | PDBTitle: thermus aquaticus rna polymerase holoenzyme at 4 a2 resolution
Resolution | 4.00 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 19 | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | Q | G | L | S | Q | R | R | A | A | E | L | S | G | L | T | H | S | A | I | S | T | I | E
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | R | E | H | T | L | E | E | V | G | A | Y | F | G | V | T | R | E | R | I | R | Q | I | E
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  | T | T | S |  | S |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 394 | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | .

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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