BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (319 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q8ZQ16 Ribosomal large subunit pseudouridine synthase C... 635 0.0 UniRef50_Q8ZFU1 Ribosomal large subunit pseudouridine synthase C... 503 e-141 UniRef50_P44433 Ribosomal large subunit pseudouridine synthase C... 477 e-133 UniRef50_Q5QZ45 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 412 e-114 UniRef50_Q9KQH0 Ribosomal large subunit pseudouridine synthase C... 409 e-113 UniRef50_Q492Q1 Pseudouridine synthase n=2 Tax=Candidatus Blochm... 351 2e-95 UniRef50_B3PEU4 Pseudouridine synthase n=18 Tax=Gammaproteobacte... 316 7e-85 UniRef50_Q89AH2 Ribosomal large subunit pseudouridine synthase C... 312 1e-83 UniRef50_C0N6T7 Pseudouridine synthase n=1 Tax=Methylophaga thio... 311 2e-83 UniRef50_Q2SK59 Pseudouridine synthase n=3 Tax=Gammaproteobacter... 307 4e-82 UniRef50_C5S931 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 304 3e-81 UniRef50_A3Y8C6 Pseudouridine synthase n=1 Tax=Marinomonas sp. M... 302 1e-80 UniRef50_Q21K97 Pseudouridine synthase n=10 Tax=Gammaproteobacte... 297 3e-79 UniRef50_Q0A8Q9 Pseudouridine synthase n=4 Tax=Ectothiorhodospir... 292 1e-77 UniRef50_B0U5V6 Pseudouridine synthase n=7 Tax=Xylella fastidios... 291 2e-77 UniRef50_Q5ZT70 Pseudouridine synthase n=5 Tax=Legionella RepID=... 288 2e-76 UniRef50_A6GP31 Pseudouridine synthase n=1 Tax=Limnobacter sp. M... 281 2e-74 UniRef50_Q126H9 Pseudouridine synthase n=1 Tax=Polaromonas sp. J... 280 6e-74 UniRef50_Q0VQN9 Pseudouridine synthase n=2 Tax=Alcanivorax RepID... 277 4e-73 UniRef50_Q0AFD5 Pseudouridine synthase n=3 Tax=Nitrosomonas RepI... 277 4e-73 UniRef50_A0Z298 Pseudouridine synthase n=1 Tax=marine gamma prot... 275 1e-72 UniRef50_Q3JQ55 Pseudouridine synthase n=170 Tax=cellular organi... 271 2e-71 UniRef50_A1AVB5 Pseudouridine synthase n=2 Tax=sulfur-oxidizing ... 269 1e-70 UniRef50_B6BTS8 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 261 3e-68 UniRef50_D0L1K7 Pseudouridine synthase n=1 Tax=Halothiobacillus ... 256 9e-67 UniRef50_A5WCP4 Pseudouridine synthase n=15 Tax=Moraxellaceae Re... 255 2e-66 UniRef50_UPI000190B9FF 23S rRNA pseudouridylate synthase C n=3 T... 254 3e-66 UniRef50_Q057L6 Pseudouridine synthase n=1 Tax=Buchnera aphidico... 254 4e-66 UniRef50_C8PW17 Pseudouridine synthase n=5 Tax=Moraxellaceae Rep... 248 2e-64 UniRef50_B0TWR8 Pseudouridine synthase n=19 Tax=Francisella RepI... 241 3e-62 UniRef50_A0L8J2 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 237 4e-61 UniRef50_A5EXY5 Pseudouridine synthase n=2 Tax=Cardiobacteriacea... 234 4e-60 UniRef50_B5JUW4 Pseudouridine synthase n=1 Tax=gamma proteobacte... 233 7e-60 UniRef50_B3T0Q8 Putative RNA pseudouridylate synthase n=2 Tax=pr... 231 2e-59 UniRef50_B9ZR86 Pseudouridine synthase, RluA family n=1 Tax=Thio... 229 9e-59 UniRef50_C7MES4 Pseudouridine synthase, RluA family n=5 Tax=Acti... 228 2e-58 UniRef50_Q0F3G4 Pseudouridine synthase n=1 Tax=Mariprofundus fer... 223 5e-57 UniRef50_B1VEM5 Pseudouridine synthase n=3 Tax=Corynebacterium R... 207 5e-52 UniRef50_A5INM9 Pseudouridine synthase n=7 Tax=Thermotogaceae Re... 184 4e-45 UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (c... 182 1e-44 UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 171 4e-41 UniRef50_Q2RQY9 Pseudouridine synthase n=3 Tax=Alphaproteobacter... 167 6e-40 UniRef50_A8F4Z7 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 165 2e-39 UniRef50_B9JWI8 Pseudouridine synthase n=1 Tax=Agrobacterium vit... 165 2e-39 UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides R... 164 3e-39 UniRef50_A7H6D3 Pseudouridine synthase n=6 Tax=Cystobacterineae ... 164 5e-39 UniRef50_Q82WZ5 Ribosomal large subunit pseudouridine synthase D... 163 6e-39 UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes Rep... 162 2e-38 UniRef50_C4FWV7 Pseudouridine synthase n=2 Tax=Firmicutes RepID=... 162 2e-38 UniRef50_B3QB01 Pseudouridine synthase n=3 Tax=Rhodopseudomonas ... 161 3e-38 UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella ad... 159 1e-37 UniRef50_C9KPZ8 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 157 3e-37 UniRef50_C6XFC8 Ribosomal large subunit pseudouridine synthase C... 157 3e-37 UniRef50_B8GX34 Pseudouridine synthase n=7 Tax=Caulobacteraceae ... 157 4e-37 UniRef50_Q28US1 Pseudouridine synthase n=43 Tax=Rhodobacterales ... 157 5e-37 UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 157 7e-37 UniRef50_D0J9U5 Pseudouridine synthase n=2 Tax=Blattabacterium R... 156 1e-36 UniRef50_Q211J3 Pseudouridine synthase n=81 Tax=Alphaproteobacte... 155 2e-36 UniRef50_Q2LWV4 Pseudouridine synthase n=1 Tax=Syntrophus acidit... 155 2e-36 UniRef50_B8FLB4 Pseudouridine synthase n=2 Tax=Bacteria RepID=B8... 155 2e-36 UniRef50_C7LWX3 Pseudouridine synthase n=1 Tax=Desulfomicrobium ... 155 2e-36 UniRef50_Q03WF6 Pseudouridine synthase n=9 Tax=Firmicutes RepID=... 155 3e-36 UniRef50_C1F7V3 Pseudouridine synthase n=1 Tax=Acidobacterium ca... 154 3e-36 UniRef50_C0ZCK6 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 154 5e-36 UniRef50_B6BTN1 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 153 7e-36 UniRef50_C8P3R0 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 153 9e-36 UniRef50_A1URK8 Pseudouridine synthase n=2 Tax=Bartonella RepID=... 153 1e-35 UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3... 152 1e-35 UniRef50_D1CBT6 Pseudouridine synthase n=1 Tax=Thermobaculum ter... 151 2e-35 UniRef50_Q49WX8 Pseudouridine synthase n=1 Tax=Staphylococcus sa... 151 3e-35 UniRef50_Q9JVB6 Ribosomal large subunit pseudouridine synthase D... 151 3e-35 UniRef50_A9IQ66 Pseudouridine synthase n=5 Tax=Bacteria RepID=A9... 151 4e-35 UniRef50_A3VN52 Ribosomal large subunit pseudouridine synthase C... 150 5e-35 UniRef50_D2LES8 Pseudouridine synthase, RluA family n=1 Tax=Rhod... 150 6e-35 UniRef50_B2IK20 Pseudouridine synthase n=2 Tax=Beijerinckiaceae ... 150 7e-35 UniRef50_A3ZV48 Pseudouridine synthase n=1 Tax=Blastopirellula m... 149 1e-34 UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae Re... 149 1e-34 UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defec... 149 2e-34 UniRef50_D0XS67 Pseudouridine synthase n=1 Tax=Brevundimonas sub... 148 3e-34 UniRef50_D1ASB1 Pseudouridine synthase n=1 Tax=Anaplasma central... 147 4e-34 UniRef50_Q01Q94 Pseudouridine synthase n=1 Tax=Candidatus Soliba... 147 5e-34 UniRef50_A7HL94 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 147 7e-34 UniRef50_C6WV38 Pseudouridine synthase n=3 Tax=Proteobacteria Re... 147 7e-34 UniRef50_Q2GKG0 Pseudouridine synthase n=4 Tax=Anaplasma RepID=Q... 147 7e-34 UniRef50_A3EQJ0 Pseudouridine synthase n=1 Tax=Leptospirillum ru... 146 8e-34 UniRef50_A8Z5T0 Pseudouridine synthase n=3 Tax=Candidatus Sulcia... 146 9e-34 UniRef50_A0Q1S9 Pseudouridine synthase n=32 Tax=Clostridium RepI... 146 1e-33 UniRef50_D2R7T3 Pseudouridine synthase, RluA family n=1 Tax=Pire... 146 1e-33 UniRef50_C4XN86 Pseudouridine synthase n=2 Tax=Desulfovibrio Rep... 145 2e-33 UniRef50_Q2G4F0 Pseudouridine synthase n=12 Tax=Alphaproteobacte... 145 2e-33 UniRef50_A9BMW0 Pseudouridine synthase n=10 Tax=Comamonadaceae R... 145 2e-33 UniRef50_B0N6U2 Pseudouridine synthase n=5 Tax=Bacteria RepID=B0... 145 3e-33 UniRef50_B8E0R4 Pseudouridine synthase n=1 Tax=Dictyoglomus turg... 144 3e-33 UniRef50_B6AN83 Pseudouridine synthase n=2 Tax=Leptospirillum Re... 144 4e-33 UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1... 144 6e-33 UniRef50_C8NZX3 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 144 6e-33 UniRef50_A9BJA7 Pseudouridine synthase n=1 Tax=Petrotoga mobilis... 143 8e-33 UniRef50_B2RIT5 Pseudouridine synthase n=80 Tax=root RepID=B2RIT... 143 8e-33 UniRef50_C0Z877 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 143 1e-32 UniRef50_C5VRN0 Pseudouridine synthase n=1 Tax=Clostridium botul... 142 1e-32 UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae ... 142 1e-32 UniRef50_Q0BUM2 Pseudouridine synthase n=12 Tax=Acetobacteraceae... 142 1e-32 UniRef50_C9RQF0 Pseudouridine synthase, RluA family n=1 Tax=Fibr... 142 1e-32 UniRef50_C8QZ10 Pseudouridine synthase n=1 Tax=Desulfurivibrio a... 142 2e-32 UniRef50_A5WFS2 Pseudouridine synthase n=3 Tax=Psychrobacter Rep... 142 2e-32 UniRef50_Q7UHX8 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 141 3e-32 UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri ... 141 3e-32 UniRef50_A9NGF1 Pseudouridine synthase n=1 Tax=Acholeplasma laid... 141 3e-32 UniRef50_C0GQU7 Pseudouridine synthase n=1 Tax=Desulfonatronospi... 141 4e-32 UniRef50_C8WW59 Pseudouridine synthase n=2 Tax=Alicyclobacillus ... 140 5e-32 UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B... 140 6e-32 UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B... 140 6e-32 UniRef50_D0LU78 Pseudouridine synthase n=1 Tax=Haliangium ochrac... 140 7e-32 UniRef50_A0L9J0 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 140 8e-32 UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix o... 140 9e-32 UniRef50_B8FTI5 Pseudouridine synthase n=2 Tax=Desulfitobacteriu... 139 2e-31 UniRef50_A8IAL9 Pseudouridine synthase n=2 Tax=Xanthobacteraceae... 139 2e-31 UniRef50_B3DV48 Pseudouridine synthase n=1 Tax=Methylacidiphilum... 138 2e-31 UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiace... 138 2e-31 UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae... 138 3e-31 UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_... 138 3e-31 UniRef50_Q1Q689 Similar to ribosomal large subunit pseudouridine... 137 3e-31 UniRef50_D0BL50 Pseudouridine synthase n=1 Tax=Granulicatella el... 137 4e-31 UniRef50_P75485 Uncharacterized RNA pseudouridine synthase MG209... 137 4e-31 UniRef50_D0BPC6 Pseudouridine synthase n=7 Tax=Fusobacterium Rep... 137 5e-31 UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 137 5e-31 UniRef50_C0QV86 Pseudouridine synthase n=2 Tax=Brachyspira RepID... 137 5e-31 UniRef50_A1HR26 Pseudouridine synthase, RluA family n=1 Tax=Ther... 137 6e-31 UniRef50_Q1D114 Pseudouridine synthase, RluA family n=6 Tax=Cyst... 137 7e-31 UniRef50_C9LM35 Pseudouridine synthase n=1 Tax=Dialister invisus... 137 7e-31 UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_... 136 9e-31 UniRef50_Q2NIN6 Pseudouridine synthase n=4 Tax=Candidatus Phytop... 136 9e-31 UniRef50_Q8XYX8 Ribosomal large subunit pseudouridine synthase D... 136 1e-30 UniRef50_A6LDZ7 Pseudouridine synthase n=26 Tax=Bacteroidales Re... 136 1e-30 UniRef50_A6CF60 Pseudouridine synthase n=1 Tax=Planctomyces mari... 136 1e-30 UniRef50_A5EX53 Pseudouridine synthase n=1 Tax=Dichelobacter nod... 136 1e-30 UniRef50_B9JRD0 Pseudouridine synthase n=1 Tax=Agrobacterium vit... 135 2e-30 UniRef50_Q317H5 Pseudouridine synthase n=2 Tax=Desulfovibrio Rep... 135 2e-30 UniRef50_D2RBY1 Pseudouridine synthase, RluA family n=1 Tax=Gard... 135 2e-30 UniRef50_C6V544 Pseudouridine synthase n=2 Tax=Neorickettsia Rep... 135 3e-30 UniRef50_A6LT86 Pseudouridine synthase, RluA family n=35 Tax=Clo... 135 3e-30 UniRef50_Q1ILA4 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 134 3e-30 UniRef50_A8MF48 Pseudouridine synthase n=12 Tax=Clostridiaceae R... 134 3e-30 UniRef50_Q87AR7 Ribosomal large subunit pseudouridine synthase D... 134 4e-30 UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter f... 134 4e-30 UniRef50_A5GW76 Pseudouridine synthase n=1 Tax=Synechococcus sp.... 134 4e-30 UniRef50_Q6AJM1 Pseudouridine synthase n=1 Tax=Desulfotalea psyc... 134 5e-30 UniRef50_A1AW00 Pseudouridine synthase n=2 Tax=sulfur-oxidizing ... 133 6e-30 UniRef50_C7H7W3 Ribosomal large subunit pseudouridine synthase D... 133 8e-30 UniRef50_UPI00016C3FBA ribosomal large subunit pseudouridine syn... 133 1e-29 UniRef50_A8SLC1 Pseudouridine synthase n=1 Tax=Parvimonas micra ... 133 1e-29 UniRef50_A3M2Y1 Pseudouridine synthase n=18 Tax=Gammaproteobacte... 132 1e-29 UniRef50_B9XS18 Pseudouridine synthase n=1 Tax=bacterium Ellin51... 132 1e-29 UniRef50_C1A885 Pseudouridine synthase n=1 Tax=Gemmatimonas aura... 132 1e-29 UniRef50_A7NB61 Pseudouridine synthase n=18 Tax=Francisella RepI... 131 3e-29 UniRef50_C0QAZ3 RluD1 n=1 Tax=Desulfobacterium autotrophicum HRM... 131 3e-29 UniRef50_D1AYL9 Pseudouridine synthase n=1 Tax=Streptobacillus m... 131 3e-29 UniRef50_D0RNQ1 Pseudouridine synthase n=1 Tax=alpha proteobacte... 131 3e-29 UniRef50_A9GIV4 Pseudouridine synthase n=1 Tax=Sorangium cellulo... 130 4e-29 UniRef50_P54604 Uncharacterized RNA pseudouridine synthase yhcT ... 130 6e-29 UniRef50_Q1RJX7 Ribosomal large subunit pseudouridine synthase C... 130 7e-29 UniRef50_C8PVB8 Pseudouridine synthase n=2 Tax=Moraxellaceae Rep... 130 7e-29 UniRef50_A5IBH6 Pseudouridine synthase n=6 Tax=Legionella RepID=... 130 8e-29 UniRef50_Q2SS88 Pseudouridine synthase n=4 Tax=Mollicutes RepID=... 129 9e-29 UniRef50_Q3AVX8 Pseudouridine synthase n=40 Tax=cellular organis... 129 1e-28 UniRef50_Q3A0C2 Pseudouridine synthase n=13 Tax=Bacteria RepID=Q... 129 1e-28 UniRef50_B5YAZ5 Pseudouridine synthase n=2 Tax=Dictyoglomus RepI... 129 2e-28 UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limn... 129 2e-28 UniRef50_Q2S3B7 Pseudouridine synthase n=1 Tax=Salinibacter rube... 129 2e-28 UniRef50_A8ZXZ8 Pseudouridine synthase n=1 Tax=Desulfococcus ole... 129 2e-28 UniRef50_C9M5C8 Pseudouridine synthase n=1 Tax=Jonquetella anthr... 129 2e-28 UniRef50_C2W5F3 Pseudouridine synthase n=4 Tax=Bacillus RepID=C2... 129 2e-28 UniRef50_C6CWL6 Pseudouridine synthase n=2 Tax=Paenibacillus Rep... 128 2e-28 UniRef50_C6C294 Pseudouridine synthase n=1 Tax=Desulfovibrio sal... 128 3e-28 UniRef50_B2KBB0 Pseudouridine synthase n=1 Tax=Elusimicrobium mi... 128 3e-28 UniRef50_C7RM94 Pseudouridine synthase n=11 Tax=Proteobacteria R... 127 4e-28 UniRef50_B9YI75 Pseudouridine synthase, RluA family n=1 Tax='Nos... 127 4e-28 UniRef50_C8X1I9 Pseudouridine synthase, RluA family n=1 Tax=Desu... 127 4e-28 UniRef50_Q0BWH2 Pseudouridine synthase n=3 Tax=Alphaproteobacter... 127 5e-28 UniRef50_Q3YSF8 Pseudouridine synthase n=5 Tax=canis group RepID... 127 5e-28 UniRef50_Q0F3G2 Possible pseudouridine synthase n=1 Tax=Mariprof... 127 6e-28 UniRef50_B0T2G2 Pseudouridine synthase n=6 Tax=Caulobacteraceae ... 127 7e-28 UniRef50_Q31HX2 Pseudouridine synthase n=1 Tax=Thiomicrospira cr... 126 8e-28 UniRef50_D0MK65 Pseudouridine synthase n=1 Tax=Rhodothermus mari... 126 9e-28 UniRef50_B6WPU4 Pseudouridine synthase n=1 Tax=Desulfovibrio pig... 126 1e-27 UniRef50_B4U613 Pseudouridine synthase, RluA family n=1 Tax=Hydr... 126 1e-27 UniRef50_D1Y726 Ribosomal large subunit pseudouridine synthase D... 126 1e-27 UniRef50_B8J0V1 Pseudouridine synthase n=1 Tax=Desulfovibrio des... 126 1e-27 UniRef50_C4XFS9 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=... 125 1e-27 UniRef50_B6J6C4 Pseudouridine synthase n=7 Tax=Coxiella burnetii... 125 2e-27 UniRef50_A0Y082 Pseudouridine synthase n=2 Tax=Alteromonadales R... 125 2e-27 UniRef50_C7RHG0 Pseudouridine synthase n=4 Tax=Anaerococcus RepI... 125 2e-27 UniRef50_A6DCZ8 Pseudouridine synthase n=1 Tax=Caminibacter medi... 125 2e-27 UniRef50_P59838 Ribosomal large subunit pseudouridine synthase D... 125 2e-27 UniRef50_Q0ANT2 Pseudouridine synthase n=2 Tax=Hyphomonadaceae R... 125 3e-27 UniRef50_Q5PAD0 Pseudouridine synthase n=5 Tax=Anaplasma RepID=Q... 124 3e-27 UniRef50_Q4FN11 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q4... 124 3e-27 UniRef50_B8K915 Pseudouridine synthase n=5 Tax=Vibrio RepID=B8K9... 124 3e-27 UniRef50_Q83G23 Pseudouridine synthase n=2 Tax=Tropheryma whippl... 124 3e-27 UniRef50_A9KNX9 Pseudouridine synthase n=21 Tax=Bacteria RepID=A... 124 3e-27 UniRef50_B1H073 Ribosomal large subunit pseudouridine synthase C... 124 4e-27 UniRef50_P74346 Uncharacterized RNA pseudouridine synthase slr16... 124 4e-27 UniRef50_B2A2J2 Pseudouridine synthase n=1 Tax=Natranaerobius th... 124 4e-27 UniRef50_A6DUC9 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 124 5e-27 UniRef50_C4PLV8 Pseudouridine synthase n=13 Tax=Chlamydiaceae Re... 124 5e-27 UniRef50_C4XSN0 Ribosomal large subunit pseudouridine synthase D... 124 5e-27 UniRef50_C3WCY4 Pseudouridine synthase n=1 Tax=Fusobacterium mor... 124 5e-27 UniRef50_D1RB31 Pseudouridine synthase n=1 Tax=Parachlamydia aca... 124 6e-27 UniRef50_B0PEI9 Pseudouridine synthase n=5 Tax=Bacteria RepID=B0... 124 6e-27 UniRef50_B6BNM7 Ribosomal large subunit pseudouridine synthase, ... 124 6e-27 UniRef50_Q8K9E9 Ribosomal large subunit pseudouridine synthase D... 124 6e-27 UniRef50_Q63E77 Pseudouridine synthase n=73 Tax=Bacillaceae RepI... 124 6e-27 UniRef50_D1AMK0 Pseudouridine synthase, RluA family n=1 Tax=Seba... 124 6e-27 UniRef50_D1VS73 Pseudouridine synthase n=1 Tax=Peptoniphilus lac... 123 8e-27 UniRef50_D1Y3Y9 Pseudouridine synthase n=1 Tax=Pyramidobacter pi... 123 8e-27 UniRef50_A6GHA7 Pseudouridine synthase n=1 Tax=Plesiocystis paci... 123 9e-27 UniRef50_C1ZB48 Pseudouridine synthase, RluA family n=1 Tax=Plan... 123 1e-26 UniRef50_C8WWB4 Pseudouridine synthase n=2 Tax=Alicyclobacillus ... 123 1e-26 UniRef50_B5JHH9 Pseudouridine synthase n=1 Tax=Verrucomicrobiae ... 123 1e-26 UniRef50_D0LYX0 Pseudouridine synthase n=1 Tax=Haliangium ochrac... 122 1e-26 UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_17... 122 2e-26 UniRef50_C9M7B4 Pseudouridine synthase n=1 Tax=Jonquetella anthr... 122 2e-26 UniRef50_D0KVM5 Pseudouridine synthase n=11 Tax=Proteobacteria R... 122 2e-26 UniRef50_Q2LVB7 Pseudouridine synthase n=1 Tax=Syntrophus acidit... 122 2e-26 UniRef50_B7GQ28 Pseudouridine synthase, RluA family n=21 Tax=Bif... 122 2e-26 UniRef50_C6D874 Pseudouridine synthase, RluA family n=2 Tax=Paen... 122 2e-26 UniRef50_D1BAB3 Pseudouridine synthase n=1 Tax=Thermanaerovibrio... 122 2e-26 UniRef50_B5YKV0 Pseudouridine synthase n=1 Tax=Thermodesulfovibr... 122 2e-26 UniRef50_D1VRZ3 Pseudouridine synthase n=1 Tax=Peptoniphilus lac... 122 2e-26 UniRef50_B0VJ94 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 122 2e-26 UniRef50_Q1MQF8 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q1... 121 3e-26 UniRef50_B0S0X9 Pseudouridine synthase n=2 Tax=Finegoldia magna ... 121 3e-26 UniRef50_C6E472 Pseudouridine synthase n=4 Tax=Geobacter RepID=C... 121 3e-26 UniRef50_C3WHA9 Pseudouridine synthase n=4 Tax=Fusobacterium Rep... 121 3e-26 UniRef50_Q26D11 Pseudouridine synthase n=2 Tax=Flavobacteria Rep... 121 3e-26 UniRef50_Q1J0S8 Pseudouridine synthase n=7 Tax=Deinococci RepID=... 121 4e-26 UniRef50_Q2W2D5 Pseudouridine synthase n=39 Tax=Bacteria RepID=Q... 121 4e-26 UniRef50_B1ZYX0 Pseudouridine synthase n=4 Tax=Verrucomicrobia R... 121 4e-26 UniRef50_D0P480 Ribosomal large subunit pseudouridine synthase A... 120 5e-26 UniRef50_Q1D9A6 Pseudouridine synthase n=2 Tax=Cystobacterineae ... 120 5e-26 UniRef50_B5ZBC1 RluA n=15 Tax=Ureaplasma RepID=B5ZBC1_UREU1 120 5e-26 UniRef50_A3HSB5 Pseudouridine synthase n=1 Tax=Algoriphagus sp. ... 120 5e-26 UniRef50_C0M8E2 Pseudouridine synthase n=3 Tax=Streptococcus equ... 120 5e-26 UniRef50_A4J1I1 Pseudouridine synthase n=1 Tax=Desulfotomaculum ... 120 6e-26 UniRef50_D0RPR1 Pseudouridine synthase n=1 Tax=alpha proteobacte... 120 6e-26 UniRef50_B9L8H5 Pseudouridine synthase n=1 Tax=Nautilia profundi... 120 7e-26 UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0... 120 7e-26 UniRef50_C1CWT3 Pseudouridine synthase n=1 Tax=Deinococcus deser... 120 7e-26 UniRef50_P0AA37 Ribosomal large subunit pseudouridine synthase A... 120 7e-26 UniRef50_C0ZH07 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 120 7e-26 >UniRef50_Q8ZQ16 Ribosomal large subunit pseudouridine synthase C n=110 Tax=Gammaproteobacteria RepID=RLUC_SALTY Length = 319 Score = 635 bits (1639), Expect = 0.0, Method: Compositional matrix adjust. Identities = 311/319 (97%), Positives = 314/319 (98%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 MKTETPSVKIVAI ADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL Sbjct: 1 MKTETPSVKIVAIAADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS Sbjct: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 Query: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV Sbjct: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 RGQWQSHVK+VQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR Sbjct: 181 RGQWQSHVKTVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVHTQYAGHPIAFDDRYGDREFD+QLTEAGTGL RLFLHAAALKFTHPGTGEVMRI Sbjct: 241 THQIRVHTQYAGHPIAFDDRYGDREFDQQLTEAGTGLKRLFLHAAALKFTHPGTGEVMRI 300 Query: 301 EAPMDEGLKRCLQKLRNAR 319 EAPMD LKRCLQ LRNA+ Sbjct: 301 EAPMDNALKRCLQVLRNAK 319 >UniRef50_Q8ZFU1 Ribosomal large subunit pseudouridine synthase C n=102 Tax=Gammaproteobacteria RepID=RLUC_YERPE Length = 320 Score = 503 bits (1296), Expect = e-141, Method: Compositional matrix adjust. Identities = 255/316 (80%), Positives = 279/316 (88%), Gaps = 2/316 (0%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 MKT P V+++ I+ADEAGQRIDNFL +LKGVPKSMIYRI+RKGEVRVNK RIKPEYKL Sbjct: 1 MKTNNPVVQLITISADEAGQRIDNFLLAKLKGVPKSMIYRIVRKGEVRVNKGRIKPEYKL 60 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 GD VR+PPVRVAEREE VS L KVAALAD IL+EDD++LVLNKPSGTAVHGGSGLS Sbjct: 61 ADGDVVRVPPVRVAEREEVQVSAKLDKVAALADCILFEDDYLLVLNKPSGTAVHGGSGLS 120 Query: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLR K MQKDYLALV Sbjct: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRLKSMQKDYLALV 180 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 RGQWQSH K++QAPLLKNI+QSGER+V+VS EGKPSETRFK+EER+ ATLV+ SPVTGR Sbjct: 181 RGQWQSHCKAIQAPLLKNIMQSGERVVKVSSEGKPSETRFKIEERFEHATLVKASPVTGR 240 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH +AGHPIAFDDRYG REFD+QL GTGL+RLFLHAAAL+F HP TGE MRI Sbjct: 241 THQIRVHALHAGHPIAFDDRYGYREFDQQLQ--GTGLHRLFLHAAALRFEHPNTGETMRI 298 Query: 301 EAPMDEGLKRCLQKLR 316 EAP+D L+ CL LR Sbjct: 299 EAPLDNQLRHCLLALR 314 >UniRef50_P44433 Ribosomal large subunit pseudouridine synthase C n=22 Tax=Gammaproteobacteria RepID=RLUC_HAEIN Length = 322 Score = 477 bits (1228), Expect = e-133, Method: Compositional matrix adjust. Identities = 227/318 (71%), Positives = 269/318 (84%), Gaps = 2/318 (0%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 K SVK++ I+ DE+GQRIDN+L +LKGVPKS+IYRI+RKGEVRVNK RIKPEYKL+ Sbjct: 7 KIINSSVKMLTISEDESGQRIDNYLLAKLKGVPKSLIYRIVRKGEVRVNKGRIKPEYKLQ 66 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 GD VRIPPVRVAE+ + +S +L KVAAL + IL+EDD +++LNKPSG AVHGGSGL+F Sbjct: 67 TGDVVRIPPVRVAEKNDAPISKNLNKVAALENQILFEDDCLIILNKPSGIAVHGGSGLNF 126 Query: 122 GVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 GVIE LRALRPEARFLELVHRLDRDTSG+LL+AKKRSALR+LHEQLR K +QKDYLALVR Sbjct: 127 GVIEALRALRPEARFLELVHRLDRDTSGILLIAKKRSALRNLHEQLRVKTVQKDYLALVR 186 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 GQWQSH+K +QA LLKN L SGERIVRVS++GKPSETRF +EERY ATLV+ SPVTGRT Sbjct: 187 GQWQSHIKVIQASLLKNELSSGERIVRVSEQGKPSETRFSIEERYINATLVKASPVTGRT 246 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVHTQYAGHPIA DD+YGD++FD+Q+ E GLNRLFLHA +++F HP GE +R Sbjct: 247 HQIRVHTQYAGHPIALDDKYGDKDFDKQMNE--LGLNRLFLHAFSIRFEHPKNGETLRFN 304 Query: 302 APMDEGLKRCLQKLRNAR 319 A +D +K LQKLR ++ Sbjct: 305 ASLDHQMKAILQKLRESK 322 >UniRef50_Q5QZ45 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q5QZ45_IDILO Length = 315 Score = 412 bits (1060), Expect = e-114, Method: Compositional matrix adjust. Identities = 204/315 (64%), Positives = 251/315 (79%), Gaps = 3/315 (0%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 MKT V+ ++A+E+GQRIDNFL QL+GVPKS++YRI+RKGEVR NKKRIKP+YKL Sbjct: 1 MKTIQQEVRWHTVSAEESGQRIDNFLIAQLRGVPKSLVYRIVRKGEVRANKKRIKPDYKL 60 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 + GD +RIPPV+V ER + S +L++VAAL ILYEDD ++++NKPSG AVHGGSGL Sbjct: 61 KEGDLIRIPPVKVNERPD-LPSANLEQVAALEHAILYEDDALMLINKPSGVAVHGGSGLQ 119 Query: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 FG+IEGLRALRP+ + LELVHR+DRDTSG+LLVAKKRS LRSLHEQLR K M K YLALV Sbjct: 120 FGLIEGLRALRPKEKSLELVHRIDRDTSGLLLVAKKRSVLRSLHEQLRNKEMNKQYLALV 179 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 RGQWQ V+SV+APL KN L+SGERIVRV EGK S TRF++++RY TLV SPVTGR Sbjct: 180 RGQWQKRVRSVEAPLKKNTLKSGERIVRVDAEGKASLTRFRIQQRYKEGTLVEASPVTGR 239 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH +AGHPIA D +YGD +FD ++ GLNRLFLHA L+F HP TG+ + Sbjct: 240 THQIRVHALHAGHPIAKDPKYGDTDFDNTMSR--LGLNRLFLHAWQLRFLHPVTGKEVAF 297 Query: 301 EAPMDEGLKRCLQKL 315 EAP+D+ L++ L++L Sbjct: 298 EAPLDDNLQQTLKQL 312 >UniRef50_Q9KQH0 Ribosomal large subunit pseudouridine synthase C n=59 Tax=Proteobacteria RepID=RLUC_VIBCH Length = 315 Score = 409 bits (1050), Expect = e-113, Method: Compositional matrix adjust. Identities = 205/313 (65%), Positives = 240/313 (76%), Gaps = 7/313 (2%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 V+ + I D AGQRIDNFLR QLK +PKS++YRILRKGEVRVNKKR+K EYKLEAGD VR Sbjct: 8 VQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVR 67 Query: 68 IPPVRVAEREEEAVSPH--LQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIE 125 +PPV V +E E P L KVA L I+YEDDH+L+LNKPSGTAVHGGSGL FG IE Sbjct: 68 VPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAIE 127 Query: 126 GLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 LRALRP+ARFLELVHR+DRDTSG+LLVAKKRSALR L Q REK +QK Y ALV G W Sbjct: 128 ALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWD 187 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245 + K V APLLKN + S IVRV+ GKPSETRF++ E++A ATLV+ SPVTGRTHQIR Sbjct: 188 AECKVVNAPLLKNEVNS---IVRVNPNGKPSETRFRILEKFAEATLVQASPVTGRTHQIR 244 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMD 305 VHTQY GHPIA+DDRYGDR FD A G+ RLFLHAA ++F HP + + + I AP++ Sbjct: 245 VHTQYMGHPIAWDDRYGDRRFD--AYTAQFGIERLFLHAANIQFVHPASEKKLEIHAPLE 302 Query: 306 EGLKRCLQKLRNA 318 L++ L K+R A Sbjct: 303 AHLEQALTKMRQA 315 >UniRef50_Q492Q1 Pseudouridine synthase n=2 Tax=Candidatus Blochmannia RepID=Q492Q1_BLOPB Length = 338 Score = 351 bits (900), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 173/320 (54%), Positives = 230/320 (71%), Gaps = 6/320 (1%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 MK +V + I+++ +GQRIDNFL T LK PKSMIY+I+R G +R+NKKRIK +YKL Sbjct: 1 MKEHDINVHFIRISSNSSGQRIDNFLYTYLKVAPKSMIYKIIRTGAIRINKKRIKFQYKL 60 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 + GD +RIPP+R + + ++++VA L ++I+YEDD++L LNKP+G A HGGSGL Sbjct: 61 QIGDLLRIPPIRGIKINRFNMK-YMEEVAFLQNIIIYEDDYLLALNKPTGVAAHGGSGLK 119 Query: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 FGVIEGLRALRP+A+FLELVHRLDR+TSGVLLVAK+R+AL LHEQLR + M+K+YLALV Sbjct: 120 FGVIEGLRALRPKAQFLELVHRLDRETSGVLLVAKRRTALVYLHEQLRLQNMKKEYLALV 179 Query: 181 RGQWQSHVKSVQAPLL-KNILQSGERIVRV-SQEGKPSETRFKVEERY-AFATLVRCSPV 237 G+W +++ V PL KN L + R+V + S+ GK S T F+++E + AT + P+ Sbjct: 180 HGRWNVNLQIVSVPLFKKNTLLNSSRVVYIDSENGKFSTTHFQIKEYFDNVATFLAIKPI 239 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQIRVHTQYA HPI D+RYGD + + + G NRLFLHA+ L+F HP T + Sbjct: 240 TGRTHQIRVHTQYASHPIVGDNRYGDYQSNTRFKRF--GFNRLFLHASILRFIHPKTKKK 297 Query: 298 MRIEAPMDEGLKRCLQKLRN 317 I AP+ + CL LRN Sbjct: 298 FHIHAPLGQSFHNCLFFLRN 317 >UniRef50_B3PEU4 Pseudouridine synthase n=18 Tax=Gammaproteobacteria RepID=B3PEU4_CELJU Length = 349 Score = 316 bits (809), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 168/322 (52%), Positives = 223/322 (69%), Gaps = 12/322 (3%) Query: 4 ETP---SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 +TP +V+ + I A+ AGQR+DNFL QLKGVPKS IY ++RKGEVRVNK R +P+YKL Sbjct: 28 DTPRAITVRFLTIDAELAGQRLDNFLMAQLKGVPKSRIYNLVRKGEVRVNKGRSRPDYKL 87 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALAD-VILYEDDHILVLNKPSGTAVHGGSGL 119 AGD VR+PPVR AE A + ++ AL D +L+E++ +LV+NKP G AVHGGSG+ Sbjct: 88 CAGDLVRVPPVRTAEARVAAPAKAGNQLVALLDQSVLFENEGLLVINKPPGLAVHGGSGV 147 Query: 120 SFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREK---GMQKDY 176 + G+IE LR +RPEAR+LELVHRLDRDTSG ++VAKKRS LR L LR+K ++K Y Sbjct: 148 NLGLIETLRQMRPEARYLELVHRLDRDTSGCIMVAKKRSYLRHLQAALRDKVEGQIEKVY 207 Query: 177 LALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSP 236 ALV G W + + V APLL+ + + ER VRV +GKPS T F V +RY TLV P Sbjct: 208 CALVVGHWPARLHQVNAPLLRTEVGADERYVRVHPDGKPSLTLFNVIQRYQGFTLVEARP 267 Query: 237 VTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGE 296 VTGRTHQIRVH ++AGH + D++YGD + + + G+ RLFLHA++L F PG + Sbjct: 268 VTGRTHQIRVHARHAGHGLVGDEKYGDDDINLHMRN--QGIKRLFLHASSLGFCLPGEAQ 325 Query: 297 VMRIEAPMDEGLKR---CLQKL 315 + +EAP+ + L + CL+ L Sbjct: 326 MTWVEAPLPQDLAQPLSCLESL 347 >UniRef50_Q89AH2 Ribosomal large subunit pseudouridine synthase C n=5 Tax=Buchnera aphidicola RepID=RLUC_BUCBP Length = 315 Score = 312 bits (799), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 145/315 (46%), Positives = 208/315 (66%), Gaps = 1/315 (0%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 M + S + IT + QRIDNFLR K +P ++I +I+R G++R+NKKRI YKL Sbjct: 1 MTNQFSSTHFLNITENSEKQRIDNFLRKTFKRLPFNLICKIIRTGQIRINKKRINQNYKL 60 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 + GD VRIPP+ + + + + + ++ILYED++ L+LNKPSG +VH GSG++ Sbjct: 61 KLGDSVRIPPITIQSDSNKKIKLNTRLSIIFNNMILYEDNYFLILNKPSGMSVHSGSGIN 120 Query: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 +G+IE LR LRP R+L+LVHRLDRDTSGVL++AKKRS LR+LHEQLREK ++K Y+ALV Sbjct: 121 YGMIENLRILRPYNRYLDLVHRLDRDTSGVLIIAKKRSILRNLHEQLREKKIKKKYVALV 180 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 G W +KS+ PLLK + + IV++ +GK S T F ++++Y TL+ +P+TGR Sbjct: 181 HGVWPDILKSISKPLLKTSSRKNKNIVKIDPKGKESITHFNIKKKYTKNTLISITPITGR 240 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH + +PI D +YG ++ D + +NRL LHA ++ F HP + + I Sbjct: 241 THQIRVHLLHLNYPIVLDAKYGIKKLD-YFIKNKFNINRLLLHAESINFFHPKRKKNILI 299 Query: 301 EAPMDEGLKRCLQKL 315 AP+D K L+ L Sbjct: 300 TAPLDYVFKTVLKNL 314 >UniRef50_C0N6T7 Pseudouridine synthase n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6T7_9GAMM Length = 318 Score = 311 bits (798), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 164/315 (52%), Positives = 216/315 (68%), Gaps = 5/315 (1%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 K ++ V+ + I+ +AGQRIDNFL T KGVPKS IYR +RKGEVRVNK RIK YK++ Sbjct: 5 KPQSQKVQFIEISPSQAGQRIDNFLLTLEKGVPKSRIYRAIRKGEVRVNKGRIKQTYKIQ 64 Query: 62 AGDEVRIPPVRVAEREEEA-VSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 AGD VR+PP+RVAERE VS L++ L I++EDD +LVLNKPSG AVH GS + Sbjct: 65 AGDIVRVPPLRVAEREAPTHVSESLRQ--QLLQDIIFEDDSMLVLNKPSGLAVHAGSQIQ 122 Query: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 GVIE R ++PE FLELVHRLDRDTSG LL+AK R +L +L +Q+ + K YL L+ Sbjct: 123 VGVIEAFRIIKPELAFLELVHRLDRDTSGCLLLAKSRDSLLNLQQQMLSDQIDKRYLTLL 182 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 +G + + V+ PLLKN + SGER+V+V+ +GK ++T F ++ + A L TGR Sbjct: 183 KGILPNAEELVEQPLLKNTVSSGERMVKVTPDGKRAKTLFIRQQDLSLAQLTEVKLYTGR 242 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH + HP+A DD+YGDREF++ L GL RLFLHA L HP +GE M++ Sbjct: 243 THQIRVHAAWTQHPVAGDDKYGDREFNKTL--KSFGLKRLFLHAWRLGIRHPVSGEPMQL 300 Query: 301 EAPMDEGLKRCLQKL 315 EAP+ L++ + KL Sbjct: 301 EAPLPTALQQVITKL 315 >UniRef50_Q2SK59 Pseudouridine synthase n=3 Tax=Gammaproteobacteria RepID=Q2SK59_HAHCH Length = 315 Score = 307 bits (786), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 163/303 (53%), Positives = 211/303 (69%), Gaps = 13/303 (4%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 ++V I + GQR+DNFL +LKGVPK IY+I+RKGEVR+NK R KPE KL+ GD+VRI Sbjct: 13 RVVTIDSGSDGQRLDNFLVRELKGVPKGKIYKIIRKGEVRINKGRCKPETKLKDGDQVRI 72 Query: 69 PPVRVAEREE-EAVSPHLQKVAALADVI----LYEDDHILVLNKPSGTAVHGGSGLSFGV 123 PP+RV+E + E V P A L +++ L+E+D +L++NKP G AVHGGSG+SFGV Sbjct: 73 PPIRVSEGDSLEPVIP-----AGLIELVSQSTLFENDELLIINKPCGVAVHGGSGVSFGV 127 Query: 124 IEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 IE LRA R + RFLEL HRLDRDTSGVL++AKKR AL H+ L+ ++K Y A V G+ Sbjct: 128 IEILRAARQDIRFLELAHRLDRDTSGVLVLAKKRRALVQFHDMLKTGRVEKIYHAWVCGK 187 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 W H + APL KN+L+SGER+V VS++GKPSETRF+V A TLV P+TGRTHQ Sbjct: 188 WPKHKSVITAPLKKNVLRSGERMVNVSEDGKPSETRFRVLYSGAGRTLVEAQPITGRTHQ 247 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH ++AGHPI DD+Y D E +R + G+ RL LHA +L+ + P E +I Sbjct: 248 IRVHAKFAGHPIIGDDKYCDSETNRVYRD--MGVKRLCLHAYSLRMSWPDRPE-QKIVCE 304 Query: 304 MDE 306 DE Sbjct: 305 WDE 307 >UniRef50_C5S931 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=C5S931_CHRVI Length = 346 Score = 304 bits (779), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 168/314 (53%), Positives = 215/314 (68%), Gaps = 9/314 (2%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 + V + GQRIDNFL LKGVP+S +YR+LR+GEVRVNK R+K EY+L AGD VRI Sbjct: 37 QYVQVDTQADGQRIDNFLLRILKGVPRSHLYRLLRRGEVRVNKGRVKAEYRLCAGDVVRI 96 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 PP+R+ E A +P Q +A L I++ED+ +LV++KPSG AVHGGSGLS+G+IE LR Sbjct: 97 PPIRLGESAPPARAPEAQ-LARLEGAIIHEDERLLVIDKPSGLAVHGGSGLSYGLIESLR 155 Query: 129 ALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHV 188 LRP R LELVHRLDRDTSG L+V K+RSALR LH +RE G+ K YLAL+ G+ Sbjct: 156 QLRP-GRELELVHRLDRDTSGCLVVCKRRSALRELHALIREGGLDKRYLALILGELPRAE 214 Query: 189 KSVQAPLLKNILQSGERIVRV-SQEGKPSETRFKVEERYAF----ATLVRCSPVTGRTHQ 243 V APL KN+L SGER+VRV +Q GK + TRF+ +R+A TLV +TGRTHQ Sbjct: 215 LLVDAPLKKNVLSSGERLVRVDAQGGKEARTRFRRLKRFAIDGQALTLVEAELITGRTHQ 274 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH + G P+A DD+YGD +++L G GL RLFLHA+AL F +R+E P Sbjct: 275 IRVHAAHLGTPLAGDDKYGDEAANQRLK--GYGLKRLFLHASALSFKLECMARPLRLECP 332 Query: 304 MDEGLKRCLQKLRN 317 + + L++ L L N Sbjct: 333 LPDELQQVLDALEN 346 >UniRef50_A3Y8C6 Pseudouridine synthase n=1 Tax=Marinomonas sp. MED121 RepID=A3Y8C6_9GAMM Length = 322 Score = 302 bits (773), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 158/314 (50%), Positives = 214/314 (68%), Gaps = 6/314 (1%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 + + P VKI I + QRIDN+L QLKGVPK IY +LRKGE+RVNKKR+KP+ ++ Sbjct: 8 ENDRPKVKINTIDENNHDQRIDNYLMAQLKGVPKGRIYNLLRKGEIRVNKKRVKPDTRIY 67 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 +GD VRI P+ V +E + PH + + + I+YED ++V+NKPSG AVHGGSGL+F Sbjct: 68 SGDIVRIAPIVVEPPKEASPVPH-KLMQLIESRIVYEDAGLMVVNKPSGLAVHGGSGLNF 126 Query: 122 GVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREK-GMQKDYLALV 180 G++E +R LR + + +ELVHRLDRDTSG+++++KKRS L+ LH LREK G+QK Y ALV Sbjct: 127 GLVEVVRQLRSKEKSIELVHRLDRDTSGLIMISKKRSVLKQLHAALREKEGVQKTYQALV 186 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 G W + V APLLKN L+SGERIV+V EGK S TRFK+ ++ +LV C PVTGR Sbjct: 187 YGSWPKRKQQVNAPLLKNELKSGERIVKVHTEGKESLTRFKLLRQFEGYSLVECEPVTGR 246 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVHT +AG+PI DD+Y E +++ G G RL LHAA L + + + Sbjct: 247 THQIRVHTLHAGYPIVGDDKYSPSEQNKE--AKGLGFKRLCLHAAKLDIML--NDQRILV 302 Query: 301 EAPMDEGLKRCLQK 314 E P+D+ + + + Sbjct: 303 EVPIDDEWRNAMNQ 316 >UniRef50_Q21K97 Pseudouridine synthase n=10 Tax=Gammaproteobacteria RepID=Q21K97_SACD2 Length = 321 Score = 297 bits (761), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 172/309 (55%), Positives = 218/309 (70%), Gaps = 8/309 (2%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 +V+ + ++ DEAGQR+DN+L +LKGVPKS+IYR++RKGEVRVNK R KPE KL GD V Sbjct: 4 NVQFLTVSEDEAGQRLDNYLLARLKGVPKSLIYRVIRKGEVRVNKGRAKPERKLAGGDVV 63 Query: 67 RIPPVRVAEREEEA-VSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIE 125 R+PPVRVAE E +S L+ V L + ++ ++ LV+NKP+G AVHGGSG++ G+IE Sbjct: 64 RVPPVRVAESPEPVPISKTLKGV--LDNAVIADEPGYLVVNKPAGLAVHGGSGVTLGLIE 121 Query: 126 GLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLR-EKGMQKDYLALVRGQW 184 LR P+ +LELVHRLDRDTSG +LVAKKRS LR L E R EK + K YLALV G+W Sbjct: 122 ALRQAFPQYSYLELVHRLDRDTSGCILVAKKRSMLRYLQELFRGEKRIHKRYLALVIGRW 181 Query: 185 QSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA-FATLVRCSPVTGRTHQ 243 S V APLL+ LQSGERIVRVS +GKPS+T F V +R+ ATLV P+TGRTHQ Sbjct: 182 PSRRNLVDAPLLRKELQSGERIVRVSLDGKPSKTEFNVVQRFGESATLVEARPITGRTHQ 241 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH Q+ GHP+ D +YG+ FD L+ G+NRLFLHAA L F + GE + IE P Sbjct: 242 IRVHAQHQGHPLVGDPKYGNEVFD--LSVKKLGVNRLFLHAAGLSFKN-ADGEQVNIEVP 298 Query: 304 MDEGLKRCL 312 + L+ + Sbjct: 299 LPAELQSVV 307 >UniRef50_Q0A8Q9 Pseudouridine synthase n=4 Tax=Ectothiorhodospiraceae RepID=Q0A8Q9_ALHEH Length = 327 Score = 292 bits (748), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 163/309 (52%), Positives = 204/309 (66%), Gaps = 6/309 (1%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 V+ V I ++AGQR+DNFL QLKGVP+S+IYR+LR G+VRV+ KR KP +L G+ V Sbjct: 14 GVRQVRIGPEDAGQRVDNFLMRQLKGVPRSLIYRLLRSGQVRVDGKRTKPPRRLATGETV 73 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 RIPPV+ +E LQ LA ILYEDD +LV++KPSG AVHGGSGL++G+IE Sbjct: 74 RIPPVQTRAPQEATPPARLQ--GELAQRILYEDDRLLVIDKPSGLAVHGGSGLAWGLIEV 131 Query: 127 LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 LR RP A FLELVHRLDR TSG L+VAK+RSALR LHEQLR + K YLAL+ G Sbjct: 132 LRQARPSAPFLELVHRLDRATSGCLMVAKRRSALRELHEQLRTGAVHKRYLALLTGALGR 191 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 V+APL + +G VRV+ GK + T F+ R TL TGRTHQIRV Sbjct: 192 GPIPVEAPLERRSGPAGG--VRVASHGKLARTVFRAVARPGGMTLAEADIATGRTHQIRV 249 Query: 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDE 306 H + G PIA DDRYG+R +R+L G GL RLFLHA L+ + PGTG+ + IEAP+ + Sbjct: 250 HAAHLGMPIAGDDRYGERAVNRRLR--GLGLKRLFLHAHRLELSAPGTGQPLSIEAPLPD 307 Query: 307 GLKRCLQKL 315 L + +L Sbjct: 308 ELAAVVAQL 316 >UniRef50_B0U5V6 Pseudouridine synthase n=7 Tax=Xylella fastidiosa RepID=B0U5V6_XYLFM Length = 330 Score = 291 bits (745), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 156/321 (48%), Positives = 215/321 (66%), Gaps = 11/321 (3%) Query: 3 TETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEA 62 E SV+IV + A+ +GQR+DNFL ++LKGVP+S+IY+++R G+VRVN R+K E KL+ Sbjct: 13 VECFSVRIVVVPAEHSGQRLDNFLLSKLKGVPRSLIYKLVRSGQVRVNGGRVKAERKLDG 72 Query: 63 GDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG 122 GDEVR+PP+R+ + + V+P +A + I++ED +L LNKPSG A HGGSG+S+G Sbjct: 73 GDEVRLPPLRLIQ-DRAIVAPSAAFLARMEAAIVFEDARLLALNKPSGMASHGGSGVSYG 131 Query: 123 VIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRE--------KGMQK 174 VIE +R LRP+ LELVHRLDRDTSG+L++AKKR+AL L +RE +G+ K Sbjct: 132 VIEAMRILRPKQE-LELVHRLDRDTSGLLIMAKKRAALIELQALMREASVNGKEGRGIAK 190 Query: 175 DYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRC 234 YL L+ G+ + V SV APL N+ GER VRV +GKPS++RF++ ER + Sbjct: 191 RYLTLLSGRMPNGVMSVDAPLHINLRHGGERHVRVHHDGKPSKSRFRLLERRGGQSYCEV 250 Query: 235 SPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGT 294 TGRTHQIRVH Q+ GHP+ DD+YGD+E +R+L + GL RLFLHA +L+F Sbjct: 251 LIETGRTHQIRVHAQHLGHPVTGDDKYGDQEVNRKLRDQ-IGLQRLFLHAVSLEFALDAG 309 Query: 295 GEVMRIEAPMDEGLKRCLQKL 315 + AP+ E L L +L Sbjct: 310 STPYVLNAPLAEDLVAALDRL 330 >UniRef50_Q5ZT70 Pseudouridine synthase n=5 Tax=Legionella RepID=Q5ZT70_LEGPH Length = 317 Score = 288 bits (737), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 154/305 (50%), Positives = 207/305 (67%), Gaps = 7/305 (2%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVR 72 I ++E GQR+DN+L LKGVPKS IYRI+R GEVR+NKKR + +L+ GD +RIPP+R Sbjct: 11 IGSEENGQRLDNYLIRILKGVPKSHIYRIIRGGEVRINKKRAQASSRLQIGDSIRIPPIR 70 Query: 73 VAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRP 132 + + +E VS +L K L D I++ED +LV+NKP+G AVHGGSGLS GVIE LR R Sbjct: 71 MTDSKEIFVSDNLAK--RLKDSIIFEDSSLLVINKPAGIAVHGGSGLSLGVIEALRKTRH 128 Query: 133 EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVK-SV 191 + +LELVHRLDR+TSG LL+AKKRS LR++ L + +QK Y AL+ +W K ++ Sbjct: 129 DLSYLELVHRLDRETSGCLLLAKKRSTLRAIQALLEAREVQKIYWALLTHRWDGKKKITI 188 Query: 192 QAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYA 251 APL KN L+SGER+V V ++GK SET FK+ E Y A V SP TGRTHQIRVH+ Y Sbjct: 189 TAPLEKNTLKSGERVVSVQKDGKASETDFKLLENYHQACWVEASPKTGRTHQIRVHSAYF 248 Query: 252 GHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRC 311 GH I D++YG + + + + NRL+LHA +++F G V +A +D+G Sbjct: 249 GHVIVGDEKYGAKVGEVEGIDYQQ--NRLYLHARSIQFNLNGVMHVF--QADVDDGFGNT 304 Query: 312 LQKLR 316 L++LR Sbjct: 305 LKQLR 309 >UniRef50_A6GP31 Pseudouridine synthase n=1 Tax=Limnobacter sp. MED105 RepID=A6GP31_9BURK Length = 335 Score = 281 bits (720), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 156/319 (48%), Positives = 211/319 (66%), Gaps = 14/319 (4%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 ++ I QR+DNFL KGVPKS ++RI+R GEVR+N+KR + + KL GD VR+P Sbjct: 14 LLEIDEKHQDQRLDNFLCNVCKGVPKSHVFRIIRSGEVRINRKRAEAKTKLCVGDVVRVP 73 Query: 70 PVRVAEREEE---AVSPHLQK---VAALADV-ILYEDDHILVLNKPSGTAVHGGSGLSFG 122 P++V E+++ ++S L K + A AD+ IL+ED+H+LV+NKPSG AVHGGSG SFG Sbjct: 74 PIKVVEKQDLDSLSLSAGLNKTQLLKAAADLPILFEDEHLLVVNKPSGMAVHGGSGSSFG 133 Query: 123 VIEGLRALRPEA-RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 +IE +RALR E + LELVHR+DR+TSG+L+++KKRSALR L EQLR + +K Y LV Sbjct: 134 LIECIRALRAETHQDLELVHRIDRETSGILIISKKRSALRKLQEQLRARSWKKYYKTLVL 193 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKV----EERYAFATLVRCSPV 237 G W ++ V PLLK E V V + G + T+FKV + Y+ TL++ + Sbjct: 194 GHWPEALRQVDLPLLKTQSSEKEARVFVDESGDKACTKFKVIQCYKSSYSSFTLIQAQIL 253 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQIRVHT PIA DDRYG+ E ++QL A GL R+FLHAA L+ HP T E Sbjct: 254 TGRTHQIRVHTSANKFPIAGDDRYGNFEMNKQL--ARQGLKRMFLHAARLQLVHPATNET 311 Query: 298 MRIEAPMDEGLKRCLQKLR 316 + +EAP+ L L+ L+ Sbjct: 312 IVLEAPLAPELDGFLKSLQ 330 >UniRef50_Q126H9 Pseudouridine synthase n=1 Tax=Polaromonas sp. JS666 RepID=Q126H9_POLSJ Length = 378 Score = 280 bits (715), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 158/335 (47%), Positives = 213/335 (63%), Gaps = 32/335 (9%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 +V + D AGQR+DNFL LKGVPK+ +YRI+R GEVR+NK R + + +LEAGD VR+P Sbjct: 30 LVTVDEDYAGQRLDNFLIRHLKGVPKTHVYRIIRSGEVRINKGRAQADTRLEAGDIVRLP 89 Query: 70 PVRVAEREEEAVSPHLQKVA---ALADV----------ILYEDDHILVLNKPSGTAVHGG 116 PVR +ER ++ ++VA A + V +L+EDD +L ++KP+G AVHGG Sbjct: 90 PVRTSERADQKAQAMAEEVARHGASSTVGGYAPSREFPVLFEDDFLLAIDKPAGVAVHGG 149 Query: 117 SGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDY 176 SG+SFGVIE LR RP+A FLELVHRLDR+TSG+LL+AK+R AL+ L EQ RE+ K Y Sbjct: 150 SGVSFGVIEQLRMARPQADFLELVHRLDRETSGILLIAKRRMALKLLQEQFRERETDKVY 209 Query: 177 LALVRGQWQSHVKSVQAPLLKNILQS----GERIVRVSQEGKPSETR--FKVEERYAFA- 229 LALV G W ++ + + L K +L GER V+V P R V+ + AFA Sbjct: 210 LALVSGNWPANHRVIDKALHKYLLPGGAGEGERRVKVVPNDHPDGMRSVTLVKVKSAFAA 269 Query: 230 ---------TLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEA---GTGL 277 TL+ + TGRTHQIRVH GHPIA DD+YGD E ++ L ++ G L Sbjct: 270 LPAAPGTPFTLLEVTIKTGRTHQIRVHLANEGHPIAGDDKYGDFELNKSLQKSVAGGAPL 329 Query: 278 NRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCL 312 R+FLHA +LKF HP T + + +E P+ + L++ L Sbjct: 330 KRMFLHAWSLKFNHPKTRKTIHLETPLPDELQQFL 364 >UniRef50_Q0VQN9 Pseudouridine synthase n=2 Tax=Alcanivorax RepID=Q0VQN9_ALCBS Length = 317 Score = 277 bits (708), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 155/321 (48%), Positives = 211/321 (65%), Gaps = 10/321 (3%) Query: 1 MKTETPSV-KIVAITADEA--GQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPE 57 M +TP+ ++ +T DE GQR+DNFL T LKGVPKS +YRI+R GEVRVNK R K Sbjct: 1 MSEDTPAANRVTFVTIDEGRHGQRLDNFLFTHLKGVPKSRVYRIIRSGEVRVNKGRAKQT 60 Query: 58 YKLEAGDEVRIPPVRVAEREE-EAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGG 116 +L GD VR+PP+R ++ AVS L + L +YEDD + V NKP+G AVHGG Sbjct: 61 TRLCTGDVVRVPPIRTSDSTAPAAVSEGLAE--RLRRACVYEDDQLFVFNKPAGLAVHGG 118 Query: 117 SGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDY 176 SG+S G+IE LR + P+ R LELVHRLDRDTSG+++VA++RS LR L ++ ++K Y Sbjct: 119 SGVSLGLIEALRVMFPQERELELVHRLDRDTSGLIMVARRRSFLRKLQRLMQGGQIEKRY 178 Query: 177 LALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSP 236 L +G ++ +++ APLLK ++ ERIVRVS+EGKPS T F++ ER+A A LV + Sbjct: 179 WLLCQG-FKGKERTLDAPLLK-MMNGNERIVRVSREGKPSVTHFRLLERFAQAQLVEATL 236 Query: 237 VTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGE 296 TGRTHQIRVH+Q+ G + D +YG + + L E G RL LHA L F HP TG+ Sbjct: 237 ETGRTHQIRVHSQFGGFALLGDSKYGIAKGEALLAEIGR--RRLCLHARTLVFVHPNTGK 294 Query: 297 VMRIEAPMDEGLKRCLQKLRN 317 + + AP+D+ + L LR+ Sbjct: 295 RLTVTAPLDDDYEAILTALRS 315 >UniRef50_Q0AFD5 Pseudouridine synthase n=3 Tax=Nitrosomonas RepID=Q0AFD5_NITEC Length = 354 Score = 277 bits (708), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 154/322 (47%), Positives = 215/322 (66%), Gaps = 15/322 (4%) Query: 3 TETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEA 62 +E VK V TA+ GQRIDNFL LK +P+ IY++LR G+VRVN KRI Y+L Sbjct: 32 SEHAVVKQVDETAE--GQRIDNFLIKALKDIPRRHIYQLLRSGQVRVNSKRIDAGYRLLL 89 Query: 63 GDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG 122 D+VRIPPV + +P+ A D LY+DD++LV+NKP+GTAVHGGSG+S+G Sbjct: 90 NDKVRIPPVLKLAKPISRQAPYR---AEQFDT-LYQDDYLLVINKPAGTAVHGGSGISYG 145 Query: 123 VIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 VIE LR RP+ +FLELVHRLDR+TSGVLL+A+KR L LH+Q+RE ++K YL LVRG Sbjct: 146 VIEQLRKQRPDWKFLELVHRLDRETSGVLLLARKRQTLLELHKQIREGTVRKHYLTLVRG 205 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVS------QEGKPSETRFKVEERYAFATLVRCSP 236 +W++ +++V+ PL K + GER V ++ + + + T F +++ + +L+ Sbjct: 206 KWKNSLQNVRLPLYKYLTAEGERRVAIATGRNDHDKVQQAYTLFALQKNWEAFSLLDAEL 265 Query: 237 VTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTE---AGTGLNRLFLHAAALKFTHPG 293 TGRTHQIRVH + G PIA DD+YGD +RQL + +G L R+FLHA+ THP Sbjct: 266 KTGRTHQIRVHLAHLGFPIAGDDKYGDFGLNRQLQKDDGSGLVLKRMFLHASVFVCTHPV 325 Query: 294 TGEVMRIEAPMDEGLKRCLQKL 315 TGE++R+EAP+ + L+ L+ L Sbjct: 326 TGELLRLEAPLPDELRVFLRNL 347 >UniRef50_A0Z298 Pseudouridine synthase n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z298_9GAMM Length = 320 Score = 275 bits (704), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 152/277 (54%), Positives = 193/277 (69%), Gaps = 4/277 (1%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVR 72 + +EAGQR+DNFL+ GVPK+ IYR +RKGEVRV+K R+KP+ +LEAG VRIPP+R Sbjct: 23 VLPEEAGQRLDNFLQRVRGGVPKTRIYRAIRKGEVRVDKGRVKPDTRLEAGVSVRIPPLR 82 Query: 73 VAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRP 132 V E+ E A + + L I+ E+ +LV+NKP G AVHGGSG++ G+IE LRA+ Sbjct: 83 VPEKAEAAGAAGWR--TRLRASIIREESTLLVVNKPPGLAVHGGSGINVGLIETLRAMYE 140 Query: 133 EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQ 192 R+LELVHRLDRDTSG+LLVA++ S LR+LH LR G+ K YL LV G+W +H+K V Sbjct: 141 TDRYLELVHRLDRDTSGLLLVARRASTLRNLHVLLRSNGIDKRYLCLVNGRWPAHLKRVD 200 Query: 193 APLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAG 252 APL K L SGER V+V+ G+ S T F+V R++ ATLV PVTGRTHQIRVH Q+AG Sbjct: 201 APLEKFALPSGERRVKVAATGRQSLTTFRVVRRWSSATLVEAKPVTGRTHQIRVHCQHAG 260 Query: 253 HPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKF 289 PI D +Y D R + GL RLFLHAA+L F Sbjct: 261 FPILGDAKYADEAAVRIADK--LGLKRLFLHAASLNF 295 >UniRef50_Q3JQ55 Pseudouridine synthase n=170 Tax=cellular organisms RepID=Q3JQ55_BURP1 Length = 477 Score = 271 bits (694), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 160/317 (50%), Positives = 204/317 (64%), Gaps = 6/317 (1%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 V ++ I AGQRIDNFL KGVPKS IYRILR GEVRVNK RI +Y+L GD VR Sbjct: 159 VSLIEIDESAAGQRIDNFLLRVCKGVPKSHIYRILRSGEVRVNKGRIDAQYRLAFGDVVR 218 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 +PPVRVA + + AA + IL+EDD I+VLNKP+G AVHGGSG++FGVIE + Sbjct: 219 VPPVRVAAADLARAAGPAPVPAAEFE-ILFEDDAIIVLNKPAGVAVHGGSGVAFGVIEQM 277 Query: 128 RALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 R RP A+FLEL HRLDR+TSG+L++AKKRSAL LHEQ+RE M K Y A V G W + Sbjct: 278 RHARPHAKFLELAHRLDRETSGILMLAKKRSALVGLHEQIRENRMDKRYFACVHGDWAAD 337 Query: 188 V---KSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQI 244 + V+APL K GER VRV ++G PS T F + +R+ LV TGRTHQI Sbjct: 338 WGRRRVVKAPLFKYATPDGERRVRVQEDGLPSHTVFNLVDRWPDYALVEAELKTGRTHQI 397 Query: 245 RVHTQYAGHPIAFDDRYGDREFDRQLTEAGT--GLNRLFLHAAALKFTHPGTGEVMRIEA 302 RVH + G PI D +YGD ++ L A + R+FLHA L+ HP TGE ++ +A Sbjct: 398 RVHLAHLGLPIVGDAKYGDFALNKALARANAVPSIKRMFLHAHRLRLAHPLTGEPLQFDA 457 Query: 303 PMDEGLKRCLQKLRNAR 319 P+ ++ + +L + R Sbjct: 458 PLPAECRQFIDQLSDLR 474 >UniRef50_A1AVB5 Pseudouridine synthase n=2 Tax=sulfur-oxidizing symbionts RepID=A1AVB5_RUTMC Length = 303 Score = 269 bits (687), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 147/301 (48%), Positives = 198/301 (65%), Gaps = 15/301 (4%) Query: 19 GQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREE 78 GQR+DN+L LKGVPKS I R++RKG VRVNK R K YKL D VRIPP++V+ + Sbjct: 14 GQRLDNYLLKILKGVPKSHICRVIRKGWVRVNKGRKKVSYKLILNDIVRIPPIKVSIIKS 73 Query: 79 EAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLE 138 +S L+K+ L D LYED +L++NKPSG +VH GSG+ G+IE LR + + +E Sbjct: 74 IYISDSLKKL--LIDAKLYEDKGLLIINKPSGLSVHSGSGVDVGIIEALRQIYKKP--IE 129 Query: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKN 198 LVHRLDR TSGVLL+AKKRS L++LHEQL + ++K Y ALV+G W ++ APL +N Sbjct: 130 LVHRLDRATSGVLLIAKKRSVLKNLHEQLSQHTVEKRYTALVKGVWSKKCHTIDAPLYQN 189 Query: 199 ILQSGERIVRVSQEGKPSETRFKVEERYA----FATLVRCSPVTGRTHQIRVHTQYAGHP 254 R + V +GK + + F+ + ++ A+LV S TGRTHQIRVH +YAGH Sbjct: 190 -----SRYIMVDAKGKYAISHFQPLKNFSDGGFSASLVEISIETGRTHQIRVHAKYAGHA 244 Query: 255 IAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQK 314 +A DD+YGD+EFDRQ+ GL RLFLHA FT+P T ++ ++ A + L+ L K Sbjct: 245 LACDDKYGDKEFDRQVK--FKGLKRLFLHAHQFIFTNPLTNDIQKVNASLPVELEEFLAK 302 Query: 315 L 315 L Sbjct: 303 L 303 >UniRef50_B6BTS8 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=B6BTS8_9PROT Length = 306 Score = 261 bits (666), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 141/312 (45%), Positives = 196/312 (62%), Gaps = 20/312 (6%) Query: 9 KIVAITADEAG--QRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 +I I DE+ QRIDNFL K VPK+ I++I+R GEVRVNKKR+K YKL+ D V Sbjct: 5 QIQHIDIDESSEDQRIDNFLFKTFKDVPKNHIFKIIRNGEVRVNKKRVKTLYKLKINDVV 64 Query: 67 RIPPVRVAEREEEAVS----PHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG 122 RIPP+ E++E+ S PH I+YED+ +LV+NKPSG AVHGGSG+ FG Sbjct: 65 RIPPIEFIEKKEKKPSDNFKPH----------IIYEDEWLLVVNKPSGLAVHGGSGIDFG 114 Query: 123 VIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 +IE +R ++PE +FLELVHR+D++TSGV+++AKKRSALRS+ E R K ++K+YL V+G Sbjct: 115 LIEHMRHIKPEYKFLELVHRIDKNTSGVIVIAKKRSALRSMQELFRNKKIKKNYLVAVKG 174 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQ--EGKPSETRFKVEERYAFATLVRCSPVTGR 240 W S K V L K G + V GK S++ F + ++ +L+ +TGR Sbjct: 175 NWDSKKKEVSLRLEKKQTSEGHHVNVVEDPLRGKLSKSIFYLVKQMQKQSLLSAQIITGR 234 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRV + G P+ DD+YGD +++L +GL R+FLHA L F HP T E + + Sbjct: 235 THQIRVQLAFLGFPVLGDDKYGDFALNKKL--QSSGLKRMFLHAHKLSFFHPFTEEKVEL 292 Query: 301 EAPMDEGLKRCL 312 A + L++ Sbjct: 293 TADLPIELRKFF 304 >UniRef50_D0L1K7 Pseudouridine synthase n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1K7_HALNC Length = 346 Score = 256 bits (653), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 147/319 (46%), Positives = 198/319 (62%), Gaps = 10/319 (3%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKG----VPKSMIYRILRKGEVRVNKKRIKPEYKLEA 62 SV+ V + A AGQRIDNFL +L VP+S+IYRILR GEVRVN +R KP +L Sbjct: 18 SVRRVTVDAHYAGQRIDNFLLRELGATHGEVPRSLIYRILRTGEVRVNSQRAKPTTRLAT 77 Query: 63 GDEVRIPPVRV-AEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 GDEVRIPP+++ + +E A +A AD+I+YED+ +L +NKP+G AVHGGS + F Sbjct: 78 GDEVRIPPLKLQSPSQESAGVISANWLARAADMIVYEDEALLAVNKPAGLAVHGGSNIPF 137 Query: 122 GVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG-MQKDYLALV 180 G+IE +R LEL HR+DRDTSG+L++AK R+ L SL Q R +G +K YLA+V Sbjct: 138 GLIELMRQHTGLGEKLELAHRIDRDTSGLLILAKTRATLHSLQTQFRPEGHAEKQYLAIV 197 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 G W +K V APL K + V+V+ +GK + T F V ATL+R TGR Sbjct: 198 HGHWPDKLKRVDAPLEKWQGEGESHRVQVNPQGKEAVTHFAVLAANKNATLLRAQLETGR 257 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQL-TEAGTGLNR---LFLHAAALKFTHPGTGE 296 THQIRVHT + HPI D++YG RE+D++L G R L LHA L THP T + Sbjct: 258 THQIRVHTAHENHPIVGDEKYGQREWDKRLFPSTGASARRRPPLLLHAYRLMLTHPQTEQ 317 Query: 297 VMRIEAPMDEGLKRCLQKL 315 +++ AP+ + + Q+L Sbjct: 318 PLQLTAPIPDKWRSLAQQL 336 >UniRef50_A5WCP4 Pseudouridine synthase n=15 Tax=Moraxellaceae RepID=A5WCP4_PSYWF Length = 364 Score = 255 bits (651), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 145/312 (46%), Positives = 200/312 (64%), Gaps = 23/312 (7%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 V + +T ++ GQRIDNFL +LKG+P++ IY+++R EVR+N KR KP LE GD VR Sbjct: 62 VNHLEVTRNQHGQRIDNFLLARLKGMPRAHIYKMIRSDEVRINNKRCKPYDNLERGDVVR 121 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 I PV++A RE+ +S K +L + ++YED+ ++VLNKPSG AVHGGSGL FGVIE + Sbjct: 122 IAPVKLATREKPVISEGFAK--SLLERVVYEDEGLIVLNKPSGMAVHGGSGLDFGVIEAM 179 Query: 128 RALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 R + ++LELVHR+D+DTSG+L++AKKRS L+ L E LREK +QK YL LV+GQ + Sbjct: 180 RDATSK-KYLELVHRIDKDTSGLLMIAKKRSTLKVLQEYLREKTIQKHYLCLVKGQPALN 238 Query: 188 VKSVQAPLLKNILQSGERIVRVSQ---EGKPSETRFKVEERYAF----ATLVRCSPVTGR 240 + APLL+ + +GER V+V + E K S+T KV R+ +L+ P TGR Sbjct: 239 EFEIDAPLLRYTVANGERRVKVDKANPEAKLSQTTCKVLARFKMNGEPVSLIEAMPHTGR 298 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH Y GHPI DD+Y ++ +G+ RL LHA L E I Sbjct: 299 THQIRVHLAYLGHPILGDDKYNIKD--------TSGVRRLCLHAWQLDVP-----EYEVI 345 Query: 301 EAPMDEGLKRCL 312 +AP+ E ++ L Sbjct: 346 KAPLPEDMQSLL 357 >UniRef50_UPI000190B9FF 23S rRNA pseudouridylate synthase C n=3 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190B9FF Length = 176 Score = 254 bits (649), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 136/183 (74%), Positives = 144/183 (78%), Gaps = 18/183 (9%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 MKTETPSVKIVAI ADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL Sbjct: 1 MKTETPSVKIVAIAADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 E+GDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS Sbjct: 61 ESGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 Query: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVA-------KKRSALRSLH--EQLREKG 171 FGVIEG V + D ++L A +++A R + EKG Sbjct: 121 FGVIEGCG---------RCVRKRDSWNWCIVLTAILPACCWWRKNAPRCVRCMSNCDEKG 171 Query: 172 MQK 174 MQK Sbjct: 172 MQK 174 >UniRef50_Q057L6 Pseudouridine synthase n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057L6_BUCCC Length = 317 Score = 254 bits (648), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 130/294 (44%), Positives = 190/294 (64%), Gaps = 3/294 (1%) Query: 20 QRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEE 79 QRIDNFL K +PKSMIYR LR G++++NKK++ P YKL+ D + + + E +++ Sbjct: 20 QRIDNFLFKTFKKLPKSMIYRSLRIGKIKINKKKVHPYYKLKINDNITFFSINI-ETKKK 78 Query: 80 AVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLEL 139 ++ + IL+ED+ +++ NKP G AVHGGSG+S+GVIE R +R + +FLEL Sbjct: 79 KINLSKSIIQLFIKNILFEDNDLIIFNKPYGFAVHGGSGISYGVIEIFRKIRSDLKFLEL 138 Query: 140 VHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNI 199 VHR+D++TSG+L+++KKRS L+ +H LREK + K+YLA++ G W K V+ PLLK Sbjct: 139 VHRIDKETSGILILSKKRSILKKMHINLREKKIYKEYLAILHGYWSKKNKIVKLPLLKKK 198 Query: 200 LQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDD 259 ++ V V +EGK ++T F++++ TLV+ P+TGRTHQIRVHT GHPI FD+ Sbjct: 199 NIKQKKKVCVHKEGKLAQTNFEIKKYLNNKTLVKIIPITGRTHQIRVHTAQFGHPIVFDN 258 Query: 260 RYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQ 313 RYG E ++ RL LHA + F HP E I AP+D+ + CL+ Sbjct: 259 RYGKIEKKKKKIIKKNS--RLLLHAFKVSFLHPRNNENFSITAPLDKKFQNCLK 310 >UniRef50_C8PW17 Pseudouridine synthase n=5 Tax=Moraxellaceae RepID=C8PW17_9GAMM Length = 365 Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 138/311 (44%), Positives = 197/311 (63%), Gaps = 24/311 (7%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 V + +T + QR+DNFL +LKG+P+S +Y ++R E+RVN KR KP KL+ D VR Sbjct: 56 VNYLTVTRQQHDQRVDNFLLGRLKGLPRSHVYNMIRSDEIRVNGKRCKPHDKLQRNDVVR 115 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 I P+++A RE+ +SP + +L + I+YED+ ++VLNKPSG AVHGGSG SFGVIE + Sbjct: 116 IAPIKLATREKPVISPDFAQ--SLLERIVYEDEGLIVLNKPSGMAVHGGSGESFGVIEAM 173 Query: 128 RALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 R + ++LELVHR+D+DTSG+L++AKKRS L++L E LREK +QK YL LV G S Sbjct: 174 REATGK-KYLELVHRIDKDTSGLLMIAKKRSTLKTLQEHLREKTLQKTYLCLVVGWISSE 232 Query: 188 VKSVQAPLLKNIL------QSGERIVRV---SQEGKPSETRFKVEERYAF----ATLVRC 234 +++ PLLK L +SGER V+V S++ KPS+T+ V +++ +L+ Sbjct: 233 TQTIDKPLLKYTLPATQEGKSGERRVKVDVKSEDSKPSQTQINVLQKFELNGQKVSLIEA 292 Query: 235 SPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGT 294 P+TGRTHQIRVH GHP+ DD+Y + + + + RL LHA L Sbjct: 293 KPLTGRTHQIRVHLASIGHPLLGDDKY-----NPNVAKGDKMVRRLCLHAYQLAIPE--- 344 Query: 295 GEVMRIEAPMD 305 E + E P+D Sbjct: 345 YETITAELPVD 355 >UniRef50_B0TWR8 Pseudouridine synthase n=19 Tax=Francisella RepID=B0TWR8_FRAP2 Length = 309 Score = 241 bits (614), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 133/301 (44%), Positives = 190/301 (63%), Gaps = 8/301 (2%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 V+++ + D QRIDNFL ++ +PKS+IYR +RKGE+RVNKKR+K ++ AGD VR Sbjct: 4 VQLIEVADDVIEQRIDNFLISKFSRLPKSLIYRWIRKGELRVNKKRVKQTTRVSAGDIVR 63 Query: 68 IPPVRVAEREEEA--VSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIE 125 +PP + E E A HL L ILYE D +V++KPSG AVHGGSG++ G++E Sbjct: 64 VPPFSLEENLEIAKVSKSHLD---FLEQRILYETDDYIVVDKPSGMAVHGGSGVNSGLVE 120 Query: 126 GLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 LR LRP+ R L+LVHRLD++TSG +L+AKK S+L + +E+ + K Y ALV G W Sbjct: 121 RLRQLRPKVRRLDLVHRLDKETSGCVLLAKKHSSLVYFFDIFKERKVNKIYYALVHGHWD 180 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQ-EGKPSETRFKVEERYAFATLVRCSPVTGRTHQI 244 V ++ PL + + G+RIV+V + EGK + TR ++ +L+ TGRTHQI Sbjct: 181 EKVDAIDLPLSRTETKDGQRIVKVDKREGKRALTRILAVQKIGDYSLLEIKLETGRTHQI 240 Query: 245 RVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPM 304 RVHT+ GHPI D +YG D++L G+++L LHA L+F +++ IEA + Sbjct: 241 RVHTRAMGHPIVADKKYGYMVDDKKLL--AKGVDKLLLHAGKLEFYDEKQQKLISIEAKL 298 Query: 305 D 305 D Sbjct: 299 D 299 >UniRef50_A0L8J2 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8J2_MAGSM Length = 328 Score = 237 bits (605), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 138/318 (43%), Positives = 197/318 (61%), Gaps = 12/318 (3%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 +V+ V + + AG R+D FL++Q VP S+I R++R G+VRVNK R + + +L GD V Sbjct: 9 AVRTVQVDEEYAGSRLDKFLKSQFPSVPFSLIQRLMRTGQVRVNKGRARGDRRLAFGDWV 68 Query: 67 RIPPVRVAEREEEAVSPHLQKVA-ALADV---ILYEDDHILVLNKPSGTAVHGGSGLSFG 122 R+PPV EE P+ +K+ ADV L+ D ILVLNKP+G VHGGSG +G Sbjct: 69 RLPPV-TPPTAEELEHPNKEKILHQSADVEARTLHRDGWILVLNKPAGIPVHGGSGHQWG 127 Query: 123 VIEGLRA----LRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLA 178 V++ +RA L EA+ EL HRLD++TSG+LL + A+R L E +RE + K YL Sbjct: 128 VVDAVRASLEKLGIEAQ-AELCHRLDKETSGLLLFGLRPRAVRLLTEAMRENQVTKTYLT 186 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVT 238 LV+G + + PL K ++ GER+V V Q G+ + T ++V Y A+L+ T Sbjct: 187 LVQGVPAARQGVINQPLSKGNVRGGERMVVVEQGGQRAVTHYRVLRSYGVASLLEVQLET 246 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM 298 GRTHQIRVH Q+ GHP+A D +YGD+ F++ + E GL RLFLHA+ L F HP + + Sbjct: 247 GRTHQIRVHMQWLGHPVAGDGKYGDKAFNKWMRE--RGLKRLFLHASELAFRHPENEQKL 304 Query: 299 RIEAPMDEGLKRCLQKLR 316 +AP+D+ L R L+ L+ Sbjct: 305 AYQAPLDDELTRVLEGLK 322 >UniRef50_A5EXY5 Pseudouridine synthase n=2 Tax=Cardiobacteriaceae RepID=A5EXY5_DICNV Length = 313 Score = 234 bits (596), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 132/307 (42%), Positives = 188/307 (61%), Gaps = 8/307 (2%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 V + ++A +AGQR+DNF+R +PKS IY++LRKGEVR NKKR+KP K+ AGD +R Sbjct: 9 VHFMTVSAADAGQRVDNFIRKYHPALPKSRIYQMLRKGEVRRNKKRVKPTDKICAGDVIR 68 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 +PP+ A+R + A+ + QK A +LYEDDH L+LNKP+G VHGGSG FGVI+ + Sbjct: 69 LPPIINAQRADVAIPIYWQKRIEAA--VLYEDDHFLILNKPAGIVVHGGSGHEFGVIDVV 126 Query: 128 RALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 R++ E + EL HRLD DTSGVL++ K R AL + + E ++K Y ALV G W Sbjct: 127 RSIWGE-NYAELAHRLDGDTSGVLVLGKHRQALNAFQTAMNEGTVEKRYWALVDGVWTRE 185 Query: 188 VKSVQAPLLKNILQSGERI-VRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 V L K L E++ V + + + T F V +R+ ATL+ TGRTHQIRV Sbjct: 186 EAEVVVHLTKAPLNVREKMQVSELENAQFARTWFYVLQRWQDATLMEAVLDTGRTHQIRV 245 Query: 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDE 306 + H IA D +YG REF+ + + G + LFLHA +KF + + + + AP+ E Sbjct: 246 SAAHCQHAIAGDKKYGKREFNDLVRK--KGFHGLFLHAREIKFCY--QNQTIHVMAPLTE 301 Query: 307 GLKRCLQ 313 +++ L+ Sbjct: 302 AMQQLLE 308 >UniRef50_B5JUW4 Pseudouridine synthase n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUW4_9GAMM Length = 321 Score = 233 bits (594), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 139/305 (45%), Positives = 187/305 (61%), Gaps = 13/305 (4%) Query: 16 DEA-GQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVA 74 DEA GQRIDNFL KGVP+S +YR+LRKGEVRVN R KP YKL++GD +R+PPVR+ Sbjct: 19 DEAVGQRIDNFLMGYWKGVPRSRVYRVLRKGEVRVNGGRKKPIYKLKSGDLLRLPPVRIE 78 Query: 75 EREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA 134 + E V + +A IL+ED+ +LV+NKPSG A H GSG+ FG+ E + + Sbjct: 79 PQGETEVPAGAWR--EIAQRILFEDERLLVINKPSGMAAHAGSGVPFGIAEAVHQHHCDG 136 Query: 135 RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAP 194 + ELVHRLDR+TSG LL+AK RS L L + R++ K YLAL+ G + + V Sbjct: 137 KRTELVHRLDRETSGCLLLAKGRSVLNVLQDSFRQRETHKQYLALLVGDLKGS-RRVDLA 195 Query: 195 LLKNILQSGERIVRVSQEGKPSETRFKVEERYAFA----TLVRCSPVTGRTHQIRVHTQY 250 L K L SGE +V V + GK + + F+ Y + TL R + TGRTHQIRVH + Sbjct: 196 LQKTKL-SGEAMVVVDEAGKSALSDFEPLAHYPWNDRTLTLARVTIHTGRTHQIRVHARA 254 Query: 251 AGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKR 310 G P+ DD+YGD +R GL RLFLHA +++F P G+ + EAP+D L++ Sbjct: 255 LGLPLLGDDKYGDERLNRDAKR--QGLKRLFLHAESIRF--PLEGQTLYFEAPLDADLEQ 310 Query: 311 CLQKL 315 + L Sbjct: 311 FINAL 315 >UniRef50_B3T0Q8 Putative RNA pseudouridylate synthase n=2 Tax=prokaryotic environmental samples RepID=B3T0Q8_9ZZZZ Length = 320 Score = 231 bits (590), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 133/311 (42%), Positives = 192/311 (61%), Gaps = 9/311 (2%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 V ++ D+ G R+DN+L +KG+PKS IYR++RKGEVR+N KR KP ++ D VRIPP Sbjct: 10 VIVSRDDDGMRLDNYLIKIIKGMPKSRIYRMIRKGEVRINSKRAKPRSRVHVNDTVRIPP 69 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 V E + S + +++++E+D L++NKPSG AVHGGSG+ G+IE LR+ Sbjct: 70 YAVNEPKTNVSSVRKDDFRRINNIVIFENDSFLLVNKPSGLAVHGGSGIHLGLIELLRSF 129 Query: 131 RPE-ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVK 189 R + LELVHRLD+DTSG LLV+KK+S LR LHE RE ++K YL L+ G++ V Sbjct: 130 REKRNEHLELVHRLDKDTSGCLLVSKKKSKLRKLHEYFREGKVKKTYLGLMVGKFTQTVY 189 Query: 190 SVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQ 249 + PL R+ GK ++T+F + E+Y + L + P+TG+THQIR H + Sbjct: 190 EIDQPLKIITTPENGRLAVPDDSGKKAKTKFFLMEKYKNSALFKIEPITGKTHQIRAHAK 249 Query: 250 YAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPG---TGEVMRIEAPMDE 306 Y P+A D+RYG + D+ ++E GL RLFLHA ++ F PG T ++ +D Sbjct: 250 YMKTPLAADNRYGIQP-DQIVSEF--GLTRLFLHAESITF--PGLSSTENTFSFKSKLDT 304 Query: 307 GLKRCLQKLRN 317 L L+KLR+ Sbjct: 305 KLIEVLEKLRS 315 >UniRef50_B9ZR86 Pseudouridine synthase, RluA family n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZR86_9GAMM Length = 328 Score = 229 bits (584), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 141/321 (43%), Positives = 191/321 (59%), Gaps = 13/321 (4%) Query: 2 KTETPS-VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 + ++PS + +++T GQR+DNFL +LKGVPKS+IYR++RKG +RV+ +R K +L Sbjct: 7 QPQSPSGPRTLSVTERGDGQRLDNFLLRELKGVPKSLIYRLVRKGAIRVDGRRAKVTQRL 66 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 G EVR+P + E E + P + + L IL+EDD +LVL+KPSG AVHGGSGL+ Sbjct: 67 SVGSEVRVPDLDRPEAVERDIPPGV--LDRLRRSILHEDDQVLVLDKPSGLAVHGGSGLA 124 Query: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 FG+IE +R LRP + LEL HRLDR+TSG LL+AK RS L+ H LRE ++K YLAL Sbjct: 125 FGIIEAMRQLRPGSE-LELGHRLDRETSGCLLLAKSRSGLQDFHAALREGRVEKRYLALQ 183 Query: 181 RGQWQSHVKSV-QAPLLKNILQSGERIVRVSQEGKPSETRFKVE-----ERYAFATLVRC 234 G + S V P+ + G+R +R ++ P R + ERY L Sbjct: 184 VGAFPSDQPIVCDEPIASSRGPDGKRRMRAGEDADPESARSAISQFVPLERYGSFQLAEV 243 Query: 235 SPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGT 294 TGRTHQIRVH Q GHP+ D YG + +R L G GL RLFLHA AL++ + Sbjct: 244 RIGTGRTHQIRVHGQAIGHPVGGDHDYGLPDANRVLR--GAGLKRLFLHAQALQYEDSAS 301 Query: 295 GEVMRIEAPMDEGLKRCLQKL 315 E AP+ + L+ L L Sbjct: 302 -ESHVYSAPLPDELQSILDAL 321 >UniRef50_C7MES4 Pseudouridine synthase, RluA family n=5 Tax=Actinomycetales RepID=C7MES4_BRAFD Length = 318 Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 128/299 (42%), Positives = 187/299 (62%), Gaps = 13/299 (4%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 + + + + AG+R+D FLR+++KGVP +++R+LR+G++RVN ++ + Y+L+AGDE+ + Sbjct: 16 RTLIVDVEHAGRRLDKFLRSRVKGVPAGLLFRLLRQGKLRVNGRKAQQNYRLQAGDEITV 75 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 P +R+ + + L L+ED+ +L+++KP+G AVH G+ + GVI+ LR Sbjct: 76 PALRIDADAAPPPAVPPALIQQLRGTALHEDEDLLIIDKPAGVAVHRGTDVPAGVIDALR 135 Query: 129 ALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQL--REKGMQKDYLALVRGQWQS 186 LRPE LEL+HRLDR TSGVL +AK S LR LH+ L RE +++ YLALV G W + Sbjct: 136 QLRPELPDLELIHRLDRSTSGVLALAKSPSMLRYLHDLLRDREDEIERRYLALVAGHWPA 195 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF-ATLVRCSPVTGRTHQIR 245 + APL + E V V +G+ +ET V +R+ ATL+ +TGR HQIR Sbjct: 196 ETTILDAPLRRE-----ENRVVVDPDGQRAETHVAVAQRFGNRATLLEVRLLTGRKHQIR 250 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTE-AGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 VH Q+AGHPIA DDRYGD F+R+ GTGL+ LHAA L P G + + AP Sbjct: 251 VHLQHAGHPIAGDDRYGDDAFNRRAASLGGTGLH---LHAAELVIPRP-DGTTLAVTAP 305 >UniRef50_Q0F3G4 Pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G4_9PROT Length = 315 Score = 223 bits (569), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 137/323 (42%), Positives = 192/323 (59%), Gaps = 20/323 (6%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 M + ++ I ADE G R+D L L +++I R++RKG VR+NKKR KPE + Sbjct: 1 MASSVAENGVLTIGADEDGSRLDRVLSRHLGAGHRALILRLIRKGNVRLNKKRCKPETHV 60 Query: 61 EAGDEVRIPPVRVAEREEEAV------SPHLQKVAALADVILYEDDHILVLNKPSGTAVH 114 AGD+V +P V+ RE + + + L K+A++ +LYEDD +LV+NKP+G VH Sbjct: 61 AAGDQVFLP---VSLREPDTMERAPVSASLLGKMASIP--VLYEDDSLLVVNKPAGMVVH 115 Query: 115 GGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQK 174 GGSG G+IE L+ R L L HRLDRDTSGVLL+AK ALR L E RE+ MQK Sbjct: 116 GGSGHEAGLIEALKQSR-GLDDLRLAHRLDRDTSGVLLMAKHLDALRRLTESFRERDMQK 174 Query: 175 DYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKV---EERYAFA-T 230 Y AL+ G +H + + L K +++ GER+V S+EGK S T ++V ER+ F Sbjct: 175 TYFALIAGHPYAHAGRMSSNLAKGVVRGGERMVVDSEEGKASVTDYQVMIEYERHGFPYA 234 Query: 231 LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGT-GLNRLFLHAAALKF 289 +V +P +GRTHQ+RV Q+ GHPI D +YG++ QL + G L LHA L+F Sbjct: 235 MVALNPHSGRTHQLRVQLQHEGHPILGDGKYGEKA---QLAAYKSLGGKGLMLHAWRLRF 291 Query: 290 THPGTGEVMRIEAPMDEGLKRCL 312 THP +G+ + +AP + L Sbjct: 292 THPVSGKSLECKAPWPDNWSALL 314 >UniRef50_B1VEM5 Pseudouridine synthase n=3 Tax=Corynebacterium RepID=B1VEM5_CORU7 Length = 313 Score = 207 bits (526), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 128/316 (40%), Positives = 192/316 (60%), Gaps = 24/316 (7%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 MK P IV+ + +A +R+D ++R+Q+KGVP ++++R++R ++ VN + KP+ + Sbjct: 1 MKHSEPQTLIVSDS--QADRRLDKYIRSQVKGVPATVLFRMMRTKQITVNGAKCKPDQRT 58 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAA------LADVILYEDDHILVLNKPSGTAVH 114 AGD+V +P + VAE + + P + AA L+ I++EDD +L++NKP+ AVH Sbjct: 59 VAGDKVHLPALEVAEAKPK---PAGDRKAAEQLARRLSRHIVFEDDDLLIVNKPANIAVH 115 Query: 115 GGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG--M 172 GSG+ GVIE LR LRPE + LEL HRLD++TSG+L+VAK LR L LRE G + Sbjct: 116 VGSGVKAGVIEALRVLRPEDKELELAHRLDKETSGLLIVAKNSKMLRHLQSLLREGGEDI 175 Query: 173 QKDYLALVRGQWQ---SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFA 229 Q+ YLA+ G + + + APL K +G V + G+ +ET+ V++ + A Sbjct: 176 QRYYLAVAGGVLKKSGKQARRIDAPLRK----TGAATVVDRRAGQQAETKLWVKKPWGRA 231 Query: 230 -TLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALK 288 TLV +TGR HQIRVH Q+ GHPI D RYGD+ ++ E G + L LHA+ L Sbjct: 232 GTLVEVQLLTGRKHQIRVHLQHLGHPIIGDSRYGDKAANQAAAEKGVRM--LMLHASRLV 289 Query: 289 FTHPGTGEVMRIEAPM 304 P +GE + ++APM Sbjct: 290 IPLP-SGEELDVQAPM 304 >UniRef50_A5INM9 Pseudouridine synthase n=7 Tax=Thermotogaceae RepID=A5INM9_THEP1 Length = 304 Score = 184 bits (467), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 121/308 (39%), Positives = 168/308 (54%), Gaps = 22/308 (7%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRIP 69 V +T + +R+D FLR QLK VP S+IY+++RKG+V VN KR+K P + LE GD V Sbjct: 3 VEVTKENFYRRLDKFLRNQLKDVPLSVIYKLIRKGKVYVNGKRVKDPSFDLEEGDVVEFR 62 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGLR 128 V + + + L V DV LYE H LVLNKP A+H G G+ +IEGL Sbjct: 63 YVNLENLPKRSEKKDLTPVPMKLDV-LYEGKHYLVLNKPPNIAIHPGKGVHVATLIEGLL 121 Query: 129 ALRPEARFLE-LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 E F LVHRLD+DTSG+L+VAK R A R L E +++ ++K+Y+ LVRG +++ Sbjct: 122 HYGQEKGFSPFLVHRLDKDTSGLLVVAKDREAARILTELFKDRNIEKEYVTLVRGTPENN 181 Query: 188 VKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVH 247 +K + PL +G+ + + + +L+R TGR HQIR H Sbjct: 182 MK-ITIPL----------------DGQEAISEIVSVKSLRDVSLLRVKIHTGRKHQIRRH 224 Query: 248 TQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEG 307 G P+ DD YGDR F+R+ + GL RLFLH+ +KF P T E AP+ + Sbjct: 225 LSQIGFPVVGDDTYGDRHFNREFRKR-YGLKRLFLHSYRMKFIDPWTEEEKDFRAPLPDD 283 Query: 308 LKRCLQKL 315 L L L Sbjct: 284 LLSVLNFL 291 >UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (class) RepID=B9L028_THERP Length = 322 Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 108/318 (33%), Positives = 177/318 (55%), Gaps = 27/318 (8%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGD--EVR 67 ++ I+ E G+R+D + +++ G+ +S + +++++G + VN + KP ++ GD EV Sbjct: 12 VLQISEREHGERLDKLIASRVTGMSRSFVQQLMKRGAILVNGEPCKPAQRVRYGDRLEVY 71 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEG 126 +PPV E P ++YEDD I+V +KP G H G G ++ Sbjct: 72 LPPVEPPTDLEPEFLP---------IPVIYEDDDIIVFDKPPGIVTHPAPGHEHGTLVNA 122 Query: 127 LRALRPEARFLE-----LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 L+A+RP+ + +VHRLD+DTSG+L+VAK +A +L EQ + + + K Y ALV Sbjct: 123 LKAIRPDLQVQPSHRPGIVHRLDKDTSGLLVVAKTEAARLALLEQWQSRSVVKKYTALVH 182 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 G + ++ AP+ ++ ++ + + V G+P+ T F+V ER+ ATL+ + TGRT Sbjct: 183 GVVEPDSGTIDAPISRDPVERTK--MAVVSWGRPAITHFRVLERFRCATLLDVTIETGRT 240 Query: 242 HQIRVHTQYAGHPIAFDDRY-GDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 HQIRVH + GHP+ D +Y G R F + R FLHA L+F HP TG+ + + Sbjct: 241 HQIRVHCAFIGHPVVGDSQYGGHRPF-------CVPVPRQFLHARYLRFVHPTTGQAIEL 293 Query: 301 EAPMDEGLKRCLQKLRNA 318 E P+ L+ L+ LR+ Sbjct: 294 ETPLPYDLRTVLEALRHC 311 >UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=B9Y836_9FIRM Length = 307 Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 113/324 (34%), Positives = 169/324 (52%), Gaps = 34/324 (10%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 +I+ + + G R+D +L T + +S +++ + VR++ +K YK++AGDE+ Sbjct: 3 TRILIVEEQDQGVRLDKYLSTAMDDCSRSRAQQLIDEEAVRIDDLPVKNSYKVKAGDEIE 62 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG-LSFGVIEG 126 V EEEA+ Q++A ++YED ++V+NKP G VH G G ++ G Sbjct: 63 -----VTLPEEEALEAQPQEMAL---NVVYEDHDVIVINKPKGLVVHPGPGNPDHTLVNG 114 Query: 127 LR-----------ALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKD 175 L LRP +VHR+D+DTSG+++ K +A +SL +QL EK + Sbjct: 115 LLWHCHDLSGINGVLRPG-----IVHRIDKDTSGLIVACKNDNAHQSLAKQLAEKTAGRQ 169 Query: 176 YLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCS 235 Y ALV G ++ AP+ ++ + +++ + +P+ T FKV ER+ TLV C Sbjct: 170 YYALVHGVINHEYGTIDAPIGRD-EKDRQKMAVTEKNSRPAITHFKVVERFDNYTLVSCR 228 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTG 295 TGRTHQIRVH QY G PI D +Y R + L G LHA L FTHP TG Sbjct: 229 LETGRTHQIRVHMQYIGFPIVGDPKYSLR---KTLPTQGQ-----MLHAYQLSFTHPSTG 280 Query: 296 EVMRIEAPMDEGLKRCLQKLRNAR 319 E M EAP+ + L +LR R Sbjct: 281 ERMTFEAPLPPEFEALLTQLRQER 304 >UniRef50_Q2RQY9 Pseudouridine synthase n=3 Tax=Alphaproteobacteria RepID=Q2RQY9_RHORT Length = 330 Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 115/309 (37%), Positives = 168/309 (54%), Gaps = 21/309 (6%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 SV+ VA+T DE G R+D + + + + + ++LR G++RV+ KR+K +LEAG +V Sbjct: 2 SVETVAVTQDEDGSRLDRWFKRRYPALTHGRLEKLLRTGQIRVDGKRVKSGERLEAGQQV 61 Query: 67 RIPPVRVAEREEEAVSPHLQ-----------KVAALADVILYEDDHILVLNKPSGTAVHG 115 R+PP+ +EA SP ++ AL IL+ED H++V+NK +G AV G Sbjct: 62 RVPPL-----GDEAPSPSSSGHAVPRPAAEGEIRALRRAILHEDAHLIVINKEAGLAVQG 116 Query: 116 GSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKD 175 G+G + L +L LVHRLD+DTSGVL++A+ ++A R+L R + K Sbjct: 117 GTGTPHHLDGMLESLADGGETPRLVHRLDKDTSGVLVLARTQAAARALTSAFRSREALKV 176 Query: 176 YLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFAT-LVRC 234 Y A+V G+ +++ L K GER+ +EGK + T F+V ++ A A V Sbjct: 177 YWAIVVGRPPMLQGTIKGALAKVAGGRGERMEINEEEGKRAVTDFRVVDQAAKACAWVEL 236 Query: 235 SPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGT 294 P TGRTHQ+RVH G PI D +YG + TE R+ LHA AL HP Sbjct: 237 HPRTGRTHQLRVHCLEMGTPILGDGKYGGPGAFLEGTEL---PKRMHLHARALALPHPAG 293 Query: 295 GEVMRIEAP 303 G V+ I AP Sbjct: 294 G-VLEIIAP 301 >UniRef50_A8F4Z7 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A8F4Z7_THELT Length = 294 Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 112/313 (35%), Positives = 170/313 (54%), Gaps = 28/313 (8%) Query: 9 KIVAITADEAG--QRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDE 65 KIV ++ +E +R+D FLR +LK VP S IY++LR G V+VN K + KP +L GD+ Sbjct: 4 KIVELSINEENSYRRLDKFLRNELKAVPLSEIYKLLRTGCVQVNGKTVRKPYTELYVGDK 63 Query: 66 VRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGL-SFGVI 124 V I R+++ L + D ILYEDD++L+LNK +G +H S +I Sbjct: 64 VTIKADLAVYRQKKD----LPSIPLKLD-ILYEDDNLLILNKKAGITIHPSEKTRSTTLI 118 Query: 125 EGLRALRPEARFL-ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 +GL + F LVHRLDRDTSGVL++AK R+L R + ++K+Y+ LV G+ Sbjct: 119 QGLHFYGAKKGFKPHLVHRLDRDTSGVLVIAKNVKTARTLSHMFRNRLVKKEYITLVSGK 178 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 G+ + +G + T +KV E + +L+R TGRTHQ Sbjct: 179 I-----------------FGDGFIDKPLDGSEALTEYKVLENFRDTSLLRVILHTGRTHQ 221 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IR H G+P+ D YGD++ + +L + L R FLH + FT+P V+ I+AP Sbjct: 222 IRKHFALIGNPVVGDILYGDKKVN-ELFKKKHNLRRQFLHCIRISFTNPSEPGVISIKAP 280 Query: 304 MDEGLKRCLQKLR 316 + + L+R ++ L+ Sbjct: 281 LPDDLERVIKGLK 293 >UniRef50_B9JWI8 Pseudouridine synthase n=1 Tax=Agrobacterium vitis S4 RepID=B9JWI8_AGRVS Length = 330 Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 108/312 (34%), Positives = 174/312 (55%), Gaps = 20/312 (6%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 ++ + + DEAG R+D + + G+ + +++R G+VRV+ R+K + +++ G V Sbjct: 3 GIEHITVGPDEAGMRLDRWFKIHYPGLGFGPLQKLMRSGQVRVDGGRVKTDARVQPGQVV 62 Query: 67 RIPPVRVAEREEEA--VSPHLQKVAA----LADVILYEDDHILVLNKPSGTAVHGGSGLS 120 R+PP+ V + ++ ++ H K A LA ++L+ED+ + VLNKP+G AV GGSGL+ Sbjct: 63 RVPPMDVDAKTPKSGPIASHDLKHAGDGELLARMLLHEDEKVFVLNKPAGLAVQGGSGLN 122 Query: 121 FGVIEGLRALRPE-ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 + + L A + LVHRLDRDTSGVL+VA+ R A + L RE+ +K Y AL Sbjct: 123 RHIDQMLEAWTSKKGEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFRERDTKKTYWAL 182 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSE----TRFKVEERYAFA-TLVRC 234 V+G + H + ++K + G+R+ R+++ G+ + ++V E A + + Sbjct: 183 VKGVPRKHDDKISTWVVKEQTEDGDRM-RIARHGEDGADHAVSYYRVLETAAQSLAWLEM 241 Query: 235 SPVTGRTHQIRVHTQYAGHPIAFDDRY--GDREFDRQLTEAGTGLNRLFLHAAALKFTHP 292 P TGRTHQ+R+H + GHPI D +Y D +D G RL LHA + HP Sbjct: 242 EPYTGRTHQLRLHALHIGHPIIGDPKYYIDDPNWDF----PGGVQKRLHLHARHIDIPHP 297 Query: 293 GTGEVMRIEAPM 304 G +RI AP+ Sbjct: 298 DGGR-LRITAPL 308 >UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides RepID=D2BIX0_DEHSV Length = 302 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 110/317 (34%), Positives = 166/317 (52%), Gaps = 26/317 (8%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 VK + A+ G+R+D ++ + + +S I ++ G V+VN K KP KL+ GD + Sbjct: 3 VKTRRLIAESDGERLDKYIAQKETDLSRSFIQALIDSGHVQVNGKTAKPSLKLKNGDTIT 62 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG-LSFGVIEG 126 I E +P K + I+++D +L++NKP G VH G +I G Sbjct: 63 I--------EISPETPPELKAEDIPLEIIFQDKDLLLINKPPGLTVHPAPGHPDHTLING 114 Query: 127 LRALRPEARFLE------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 + AL P+ + +VHRLD+DTSG+LLVAK R L +L Q +E+ ++K YL LV Sbjct: 115 VLALEPKMEDFDDPLRPGIVHRLDKDTSGLLLVAKNRETLANLSAQFKERTVRKYYLTLV 174 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 +G+ ++APL ++ Q+ ++I VS G+ + T +KV +L+ TGR Sbjct: 175 KGELHPAEGFIEAPLGRDP-QNRQKIAVVSN-GRHARTGYKVLRYIQGYSLLEVKLETGR 232 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH GHP+A D YG +E T L R FLHA L FT P G+ + Sbjct: 233 THQIRVHFAAIGHPVAGDAIYGQKE---------TWLKRQFLHAHRLSFTLPSNGQTVEF 283 Query: 301 EAPMDEGLKRCLQKLRN 317 +P+ L+ L+ L N Sbjct: 284 TSPLPPDLEETLKILEN 300 >UniRef50_A7H6D3 Pseudouridine synthase n=6 Tax=Cystobacterineae RepID=A7H6D3_ANADF Length = 339 Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 115/313 (36%), Positives = 168/313 (53%), Gaps = 16/313 (5%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI--PP 70 I+ D AGQR+D +R L+ VP S +Y++ R ++RVN R K E + AGD V I Sbjct: 6 ISEDAAGQRLDKLVRKALRDVPLSHVYKMFRTRKIRVNGGRGKAEQLVAAGDVVVIRGDE 65 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGLRA 129 R+ R+E + A+ +L+ED +L ++KP+G A H G+G+S ++E RA Sbjct: 66 ERLLARQEPEPG---ARAGAVTFGVLHEDADVLAVDKPAGLAAHPGTGISGATLVEMARA 122 Query: 130 -------LRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG-MQKDYLALVR 181 L P HRLDRDTSGV+LVAK R + L E + ++K YLALV+ Sbjct: 123 HLGTPADLPPTEFKPSPAHRLDRDTSGVVLVAKNRKTMVRLTELFTDGADVKKTYLALVK 182 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 G+ ++ PL ++ + + R + + TR+KV A+L+ + TGRT Sbjct: 183 GKMPREAGTIDLPLAEHEQTARSKAAR-GVNLQEALTRWKVVSAMKEASLLAVTIETGRT 241 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIR H + GHP+ D RYGD +R + GL R+FLHA L+ HP TG +R+E Sbjct: 242 HQIRRHLEAVGHPVLGDRRYGDFPTNRAARQR-WGLRRMFLHAWRLELPHPTTGAPLRLE 300 Query: 302 APMDEGLKRCLQK 314 AP+ L L + Sbjct: 301 APLPGELLEALSR 313 >UniRef50_Q82WZ5 Ribosomal large subunit pseudouridine synthase D n=2 Tax=Nitrosomonas RepID=RLUD_NITEU Length = 344 Score = 163 bits (413), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 107/306 (34%), Positives = 168/306 (54%), Gaps = 18/306 (5%) Query: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAERE 77 AG R+D L L +S + + + V V+ + K+ G+ +R+ +A + Sbjct: 41 AGLRLDQALAQLLPQWSRSRLQGWIEQKCVSVDSAAATCKQKVWGGESIRV----IAGQT 96 Query: 78 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 137 E S + A+ IL+EDDH+++++KP+G VH G+G G + L AL A L Sbjct: 97 ENDQS---HQAEAIPLKILFEDDHLIIIDKPAGLVVHPGNGNWHGTL--LNALLNHAPQL 151 Query: 138 E------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSV 191 +VHRLD+DT+G+L+VAK A L QL+++ +++ YLALV G+ + V Sbjct: 152 SQVPRAGIVHRLDKDTTGLLVVAKTIEAQFDLARQLQQRTVKRHYLALVLGKLEKD-GVV 210 Query: 192 QAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYA 251 AP+ ++ + + V Q GKP+ T ++V E++ +TL+ CS TGRTHQIRVH Sbjct: 211 DAPIGRHPIHRTR--MAVVQNGKPARTHYRVLEKFTASTLLHCSLETGRTHQIRVHLLSI 268 Query: 252 GHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRC 311 GHP+A D YG D +A L R LHA L+ THP +G+++ E+P+ + + Sbjct: 269 GHPLAGDPVYGRTSPDPSTADAVVRLPRQALHAWQLELTHPHSGQILLWESPLPDDMAAL 328 Query: 312 LQKLRN 317 LQ +RN Sbjct: 329 LQAIRN 334 >UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes RepID=C0BNA6_9BACT Length = 379 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 104/320 (32%), Positives = 165/320 (51%), Gaps = 39/320 (12%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI----PPVRVAER 76 RID +L ++ ++ I + ++G + VN +K YK++AGD++++ PP Sbjct: 67 RIDKYLMNFIENATRNKIQQAAKEGHIWVNDLVVKQNYKVKAGDQIKVMFTHPPYEFLLT 126 Query: 77 EEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARF 136 E+ + ++YED ++V+NKP G VH G G G + + AL + Sbjct: 127 PED-----------IPLDVVYEDSDLMVVNKPPGMVVHPGHGNYSGTL--INALLFHVKD 173 Query: 137 LEL--------VHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHV 188 L L VHR+D+DTSG+L+VAK A+ L +Q +K +++Y+A+V G + Sbjct: 174 LPLNADERPGLVHRIDKDTSGLLVVAKTAKAMTHLAKQFFDKTSEREYVAIVWGNVEEEQ 233 Query: 189 KSVQAPL---LKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245 +V+ + KN LQ + +GK + T +KV ER + TLV C TGRTHQIR Sbjct: 234 GTVRGHIGRHPKNRLQMA--VFPDGDQGKEAVTHYKVMERLGYVTLVSCVLETGRTHQIR 291 Query: 246 VHTQYAGHPIAFDDRYGDR---------EFDRQLTEAGTGLNRLFLHAAALKFTHPGTGE 296 H ++ GH + D+RYG ++ + + A L R LHA L F HP +GE Sbjct: 292 AHMKHIGHTLFNDERYGGEKILKGTTFTKYKQFVDNAFKALPRQALHAKTLGFVHPSSGE 351 Query: 297 VMRIEAPMDEGLKRCLQKLR 316 +MR P+ E + C++K R Sbjct: 352 LMRFNTPIPEDMVLCIEKWR 371 >UniRef50_C4FWV7 Pseudouridine synthase n=2 Tax=Firmicutes RepID=C4FWV7_9FIRM Length = 309 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 115/307 (37%), Positives = 170/307 (55%), Gaps = 22/307 (7%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEA 80 R+D L L G +S I +I++ G V VN + K +KL+ GDE + R EE++ Sbjct: 14 RLDKVLTDLLPGESRSTIQKIIKDGLVSVNGQEQKANFKLK-GDETLLVARRNLAVEEDS 72 Query: 81 VSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG-----LSFGVIEGLRA-LRPEA 134 L + A+ I+YED+ ILV+NKP+G VH G L G++ L L + Sbjct: 73 ----LPEPEAMDLDIIYEDEDILVINKPAGLVVHPSKGHLKGTLVNGLLHYLNGNLSTGS 128 Query: 135 RFLE--LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQ 192 F +VHR+D+DTSG+L+VAK +A ++L +QL M++ Y+ALV GQ ++ +++ Sbjct: 129 DFYRPGIVHRIDKDTSGLLVVAKHNAAHQALADQLLNHDMRRSYIALVHGQVKAPQGTIE 188 Query: 193 APLLKNILQSGERI-VRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYA 251 APL ++ R+ V++EGK + TRF+V E + ATL+ TGRTHQIRVH ++ Sbjct: 189 APLQRD---PANRLRWTVAKEGKYALTRFQVMENFENATLLDLELETGRTHQIRVHLEFI 245 Query: 252 GHPIAFDDRY--GDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLK 309 GHP+ D Y G L TG LHA ALK HP +GE + +AP+ + Sbjct: 246 GHPLVGDPVYRKGLDHIKGSLVHDMTG---QLLHAYALKLQHPRSGEWLEFKAPLPRRFE 302 Query: 310 RCLQKLR 316 L +LR Sbjct: 303 EALDQLR 309 >UniRef50_B3QB01 Pseudouridine synthase n=3 Tax=Rhodopseudomonas palustris RepID=B3QB01_RHOPT Length = 455 Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 120/318 (37%), Positives = 168/318 (52%), Gaps = 24/318 (7%) Query: 2 KTETP---SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEY 58 K E P V+ V +TADE G R+D FL + G+ S I RI+RKGE+RVN KR + Sbjct: 120 KPEAPLPTKVETVTVTADENGMRVDRFLEARFPGLSFSHIQRIVRKGELRVNGKRADSKD 179 Query: 59 KLEAGDEVRIPPVRVAERE-----EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAV 113 +LE G VRIPP+++ + EA LQ + A+ L+ED +LVLNKP+G AV Sbjct: 180 RLEEGQSVRIPPLKLDTPKLPGHLSEAEQKTLQTLKAM---TLFEDADVLVLNKPAGLAV 236 Query: 114 HGGSGLSFGVIEGLRALR-PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGM 172 GGSG + + + L LR + + LVHR+D++T+G LLVAK R A +L R + Sbjct: 237 QGGSGTTRHIDQMLEVLRDAKGQKPRLVHRIDKETAGCLLVAKTRFAATALTGSFRHRSA 296 Query: 173 QKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETR-----FKVEERYA 227 +K Y ALV G + + L K + + I+RV++ G + VE Sbjct: 297 RKIYWALVAGVPKPKQGRISTYLAKEESED-DSIMRVAKHGDDGASHAVTYYAVVETSGQ 355 Query: 228 FATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGL-NRLFLHAAA 286 V PVTGRTHQ+R H + GH I D +Y F+ + + GL NRL L A Sbjct: 356 KLAWVSLKPVTGRTHQLRAHMAHIGHAIVGDPKY----FNIENWQLPGGLQNRLHLLARR 411 Query: 287 LKFTHPGTGEVMRIEAPM 304 + HP G V+ + AP+ Sbjct: 412 IVIPHP-RGGVIDVSAPL 428 >UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NEP8_9LACT Length = 308 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 105/300 (35%), Positives = 161/300 (53%), Gaps = 33/300 (11%) Query: 17 EAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAER 76 E QR+D L +L G+ ++ I L+ G + VN + +K YK ++GDEV I ++ Sbjct: 13 EKTQRLDKVLTGEL-GLSRTTIQSWLKAGLISVNGEVVKSNYKAQSGDEVTI-----LQK 66 Query: 77 EEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARF 136 EE+ ++ + + I++EDD ++V+NKPSG VH G G + + AL + Sbjct: 67 EEDVITIQPENIPL---DIVFEDDSLIVVNKPSGMVVHPSKGHYSGTL--VNALLYHSNS 121 Query: 137 LE-----------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 L LVHR+D+DTSG+L++AK + L EQ+ E M ++Y+A+V G + Sbjct: 122 LSDSTSEEIYRPGLVHRIDKDTSGLLVIAKNNDVHQKLAEQIAENKMNREYIAIVDGHFA 181 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245 V APL ++ +R+V + GK + T F+V + ++ +LV C TGRTHQIR Sbjct: 182 HETGVVDAPLSRHQTNRLKRVVE--KGGKNAITHFEVLDSFSDYSLVSCRLETGRTHQIR 239 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM--RIEAP 303 H ++ HPI D Y + + TE G FLHA L FTHP TGE + ++E P Sbjct: 240 AHMEFIKHPIVNDPLYHPK--GKNATEFGQ-----FLHARTLSFTHPLTGETLNFQVEPP 292 >UniRef50_C9KPZ8 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPZ8_9FIRM Length = 308 Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 105/313 (33%), Positives = 163/313 (52%), Gaps = 28/313 (8%) Query: 14 TADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV--RIPPV 71 TAD+ G+R+D FL + ++ + +++ +G+ V+ + K YKL+AG++V +P Sbjct: 9 TADQDGERLDRFLTRMEPTLSRAHVQKVIAEGQALVSGRVRKANYKLQAGEKVTFHLPEA 68 Query: 72 RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI------- 124 + E E + ILYED I+V+NK G VH +G+ G + Sbjct: 69 KPVEILPEDIPLD----------ILYEDSDIIVINKARGMVVHPATGIYTGTLVNALLYH 118 Query: 125 -EGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 + L + E R +VHRLD+DTSGV++ AK +A L EQ+R K + Y A+V G Sbjct: 119 CKDLSGINGEIR-PGIVHRLDKDTSGVMVAAKNDAAHLDLAEQIRTKAAHRIYRAIVCGN 177 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 + ++ + ++ +++ V + GKP+ T F+V ER+ TLV C TGRTHQ Sbjct: 178 IREEAGVIKGDIGRHPTDR-KKMAIVHEHGKPAVTHFRVLERFGAYTLVECRLETGRTHQ 236 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH GHP+ D +YG R+ + LH+ L THP T EVM AP Sbjct: 237 IRVHMASIGHPVLGDPKYGPRK------ACPFAIKGQALHSLQLTLTHPRTREVMTFTAP 290 Query: 304 MDEGLKRCLQKLR 316 + E +++ L+ LR Sbjct: 291 LPEDMEKILKALR 303 >UniRef50_C6XFC8 Ribosomal large subunit pseudouridine synthase C n=5 Tax=Rhizobiaceae RepID=C6XFC8_LIBAP Length = 346 Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 108/310 (34%), Positives = 170/310 (54%), Gaps = 18/310 (5%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 V+ V + DE R+D + + + + +ILR G+VRV+KKR+K ++++G VR Sbjct: 7 VQYVVVENDEENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVKFNNRIQSGQVVR 66 Query: 68 IPPV------RVAEREEEAVSPHLQKVA-ALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 IPPV + E++ S +L K + L ++LYED I V NKP+G +V GGSG++ Sbjct: 67 IPPVINALNHIIKEQKILDSSVNLTKHSDFLKSILLYEDSKIYVFNKPAGISVQGGSGIA 126 Query: 121 FGVIEGLRA-LRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 + + L++ + + + L HRLD++TSG+L+VA+ R+A + L E R + +QK Y +L Sbjct: 127 YHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWSL 186 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSE---TRFKVEERYA--FATLVRC 234 V G ++ + + LLK G+ + V Q K + + FKV + +A F L Sbjct: 187 VWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWL-EM 245 Query: 235 SPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGT 294 P TGRTHQ+RVH + G PI D +Y F T N+L+LHA + HP Sbjct: 246 QPHTGRTHQLRVHALHMGCPIVGDHKYC-ANFKGNFTSPIQ--NKLYLHARYMDLPHPEG 302 Query: 295 GEVMRIEAPM 304 G ++I AP+ Sbjct: 303 GR-LQITAPL 311 >UniRef50_B8GX34 Pseudouridine synthase n=7 Tax=Caulobacteraceae RepID=B8GX34_CAUCN Length = 331 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 109/315 (34%), Positives = 162/315 (51%), Gaps = 10/315 (3%) Query: 5 TPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGD 64 T V+ + + A E G R+D + + + + + ++ R G+VRV+ R K + KL AG Sbjct: 3 TKEVRTLYVDAGEDGVRLDRWFKRRWPHLNHIQLNKLFRSGQVRVDGSRAKADTKLAAGS 62 Query: 65 EVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI 124 ++R+PP+ A + + VA ++LYED+ +L LNKP+G AV GG+ + + Sbjct: 63 QIRVPPLPDAPDPSDKNKLSARDVAYAKSLVLYEDEEVLALNKPAGLAVQGGTKTTKHID 122 Query: 125 EGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQW 184 + L A LVHRLDRDTSGVLL+ K SA L ++ QK Y A+V G Sbjct: 123 KLLSAWGEGVDRPRLVHRLDRDTSGVLLLGKTPSAAARLSGAFAKRKAQKTYWAIVAGNP 182 Query: 185 QSHVKSVQAPLLKNILQSGERIVRV---SQEGKPSETRFKVEERYAF-ATLVRCSPVTGR 240 ++ L K + E +V + +P+ET F R T + P TGR Sbjct: 183 HPTEGVMELHLAKRGVGDRELVVPAQPKDPDAQPAETEFVTISRAGPRVTWMALRPHTGR 242 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQ+R H + GHPI D +YGD E L+E GL +L LHA ++ HP G ++ I Sbjct: 243 THQLRAHMKAMGHPILGDPKYGD-EKSAPLSE---GL-KLQLHARSILLPHPSAG-MLHI 296 Query: 301 EAPMDEGLKRCLQKL 315 EAP+ +K +K Sbjct: 297 EAPLSPEMKEGFRKF 311 >UniRef50_Q28US1 Pseudouridine synthase n=43 Tax=Rhodobacterales RepID=Q28US1_JANSC Length = 354 Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 114/341 (33%), Positives = 174/341 (51%), Gaps = 38/341 (11%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 V+ + I D+ QR+D + R VP+ I ++ RKGE+RV+ R+K +LE G V Sbjct: 3 GVQTLEIGPDDGDQRLDRWFRRIFPHVPQGRIEKMCRKGEIRVDGGRVKSNTRLEVGQMV 62 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALAD--------VILYEDDHILVLNKPSGTAVHGGSG 118 R+PP+ A + + + + ++D ++Y DDHI+ +NKP+G GG+G Sbjct: 63 RVPPLPDAADPKADPANWVNNASRISDADEKMIRAAVIYRDDHIIAINKPAGLPTQGGTG 122 Query: 119 LS---FGVIEGLR-ALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQK 174 S G+ E L+ L + R LVHRLD+DTSGVLL+A+ R ++L + R + +K Sbjct: 123 QSRHVDGLAEALKFGLEDKPR---LVHRLDKDTSGVLLMARTRMGAKALTDAFRLRSTRK 179 Query: 175 DYLALVRGQWQSHVKSVQAPLLK--NILQSGE----RIVRVSQ-----EGKPSETRFKVE 223 Y A V G + +++ L+K + GE R V V + K +ET + V Sbjct: 180 IYWAAVAGSPLPRMGTIKLGLVKAPGHGRGGENEKMRAVPVDEIAQVDGAKRAETDYAVM 239 Query: 224 E----RYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYG----DREFDRQLTEAGT 275 R + LV P+TGRTHQ+R H GHPI D +YG + D + G Sbjct: 240 SNLGGRVCWCALV---PITGRTHQLRAHMAEIGHPIIGDGKYGGSGQENLGDGWGAQLGG 296 Query: 276 GLNR-LFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 ++R L LHA +L F HP TG + + AP+ E + + L Sbjct: 297 EISRKLHLHARSLSFRHPMTGAQVNLVAPLPEHMAKTWDTL 337 >UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A7HM17_FERNB Length = 314 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 106/316 (33%), Positives = 166/316 (52%), Gaps = 21/316 (6%) Query: 11 VAITADEAGQRIDNFLRTQL-KGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 + +T+ E G R+D F+ + + + ++ I R ++ GEV VN KP YK+++GD + + Sbjct: 3 IQVTSRENGWRLDKFVMEKTPEWISRTFIQRAIKNGEVLVNGTSKKPSYKVKSGDIITL- 61 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVH-----GGSGLSFGVI 124 E P + D+I YED ILV+NK G H + GV+ Sbjct: 62 -----NAPEAPEIPEILPEDIPLDII-YEDRDILVINKQPGIITHPIPSHTSGTIVNGVL 115 Query: 125 EGLRALRPEARFLE--LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 + L+ L +VHRLD+DTSGV+++AK A +SL +Q +++ +K Y+ LV+G Sbjct: 116 YHCKDLQGIGGVLRPGIVHRLDKDTSGVMVIAKNDLAHQSLTKQFKDRLTEKLYICLVKG 175 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA-FATLVRCSPVTGRT 241 + ++ + +N + + V S+ GKP+ T +KV + A LV P TGRT Sbjct: 176 VPKRKEGDIEINIARNPVLRVKMTVTNSEYGKPALTHYKVVREFGDIAALVFAYPKTGRT 235 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVH +Y GHP+ D+ YG + D G+ R LHA +L F HP TGE ++ Sbjct: 236 HQIRVHMKYIGHPLMGDEVYGRAKEDEIF-----GIKRQMLHALSLSFYHPRTGEKVKFI 290 Query: 302 APMDEGLKRCLQKLRN 317 A + + K +QKL + Sbjct: 291 AKIPQDFKEAIQKLDD 306 >UniRef50_D0J9U5 Pseudouridine synthase n=2 Tax=Blattabacterium RepID=D0J9U5_BLASP Length = 344 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 107/317 (33%), Positives = 163/317 (51%), Gaps = 28/317 (8%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGD----EVRIPPVRVAER 76 RID FLR ++ + ++ I + G++ VN+ IK YK++ D E+ PP+ +E Sbjct: 18 RIDKFLRKSIQNISRNQIQKATNSGKILVNQCIIKKNYKIKPFDLVEAEIYYPPILDSEY 77 Query: 77 EEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGLRA-LRPEA 134 + + ILYED+ ILV+NK +G VH G G G +I G++ + Sbjct: 78 KNIIAE-------NIPLNILYEDEDILVINKAAGMVVHPGFGNEKGTLIHGIKYHFKNNH 130 Query: 135 RF--LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQ 192 + L LVHR+D+DT+G+L++AK A + L +Q K +Q+ YLALV G Q ++ Sbjct: 131 QLYRLGLVHRIDKDTTGLLVLAKNEYAQKYLFQQFISKTIQRKYLALVWGNIQKQEGTIS 190 Query: 193 APLLK--NILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQY 250 + + N + R + S T +KV ER+ + T V C+ TG+THQIRVH +Y Sbjct: 191 GFIGRDPNNRKRMTLFQRNFYRSRYSVTHYKVLERFKYLTYVSCNLETGKTHQIRVHFKY 250 Query: 251 AGHPIAFDDRY-GDREFDRQ---------LTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 GHP+ D Y GD+ F ++ ++ L R LHA +L F HP + Sbjct: 251 LGHPLFNDSTYGGDKIFMKKYLSKKSIDFFKDSLNLLKRQALHAGSLSFIHPKNRKC-HF 309 Query: 301 EAPMDEGLKRCLQKLRN 317 + E K+ LQKLRN Sbjct: 310 TCSIPEDFKKVLQKLRN 326 >UniRef50_Q211J3 Pseudouridine synthase n=81 Tax=Alphaproteobacteria RepID=Q211J3_RHOPB Length = 501 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 117/307 (38%), Positives = 168/307 (54%), Gaps = 16/307 (5%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 V+ V ++ADE R+D FL + G+ S I RI+RKGE+RV+ KR + +LE G VR Sbjct: 174 VETVVVSADENNMRVDRFLEARYPGLSFSHIQRIVRKGELRVDGKRADSKDRLEEGQTVR 233 Query: 68 IPPVRVAERE--EEAVSPHLQK-VAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI 124 IPP+++ + +S QK +AAL +ILYED ++VLNKP+G AV GGSG + V Sbjct: 234 IPPLKLDAPKVGTGNLSEAEQKTMAALRAMILYEDADVMVLNKPAGLAVQGGSGTTRHVD 293 Query: 125 EGLRALR-PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 L +R + + LVHRLD++T+G LL+AK R A +L RE+ +K Y ALV G Sbjct: 294 LMLEVMRDAKGQKPRLVHRLDKETAGCLLIAKTRFAATALTGAFRERSARKVYWALVAGV 353 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSE----TRFKVEERYAFA-TLVRCSPVT 238 + + L K + + I+R+++ G T + V E A V PVT Sbjct: 354 PKPKQGRISTYLAKEESED-DTIMRIAEHGDEGASHAVTYYAVVETSASKLAWVSLKPVT 412 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGL-NRLFLHAAALKFTHPGTGEV 297 GRTHQ+R H + GH I D +Y F+ + + GL NRL L A + HP G Sbjct: 413 GRTHQLRAHMAHIGHAIVGDPKY----FNIENWQLPGGLQNRLHLLARRIVIPHPRGG-T 467 Query: 298 MRIEAPM 304 + + AP+ Sbjct: 468 IDVSAPL 474 >UniRef50_Q2LWV4 Pseudouridine synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LWV4_SYNAS Length = 333 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 108/320 (33%), Positives = 166/320 (51%), Gaps = 26/320 (8%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVN-KKRIKPEYKLEAGDEVRIPPV 71 +TA E+G R+D FL + G ++ + R++ G V ++ K I+ KL GD V + Sbjct: 12 VTATESGLRLDLFLASHESGFSRARLQRLIESGRVTISGKAAIRASQKLRTGDIVML--- 68 Query: 72 RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR 131 EE +P + ILYED +LVL+KP+G VH +G G + + AL Sbjct: 69 -----EEPPATPLELIPQDIPLSILYEDHDLLVLDKPAGLVVHPAAGHVSGTL--VNALL 121 Query: 132 PEARFLE---------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 R L +VHRLD+DTSG+L+VAK +A + L Q ++ + K Y ALV G Sbjct: 122 FHCRDLAGIGGVMRPGIVHRLDKDTSGLLVVAKTDAAHQGLALQFKKHQVGKTYQALVYG 181 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 + + P+ ++ ++ +++ S+ GK + TR+++ ER+ ATL+ VTGRTH Sbjct: 182 DPREKTGQIDLPVGRHPVER-KKMSTKSRRGKEAATRWRIAERFGVATLLNVDIVTGRTH 240 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTG-----LNRLFLHAAALKFTHPGTGEV 297 QIRVH GHP+ D YG + LT+ ++R LHAA L FTHP T ++ Sbjct: 241 QIRVHLAAIGHPVVGDAVYGSSKRATTLTDPAVKGRLKEMSRQALHAARLSFTHPVTHKI 300 Query: 298 MRIEAPMDEGLKRCLQKLRN 317 + AP+ ++ LR Sbjct: 301 LEFHAPLPADMEDLCAFLRK 320 >UniRef50_B8FLB4 Pseudouridine synthase n=2 Tax=Bacteria RepID=B8FLB4_DESAA Length = 321 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 110/316 (34%), Positives = 162/316 (51%), Gaps = 25/316 (7%) Query: 17 EAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAER 76 E GQR+D F+ K + ++ R++R+G V V+K KP Y L+ G+ V V V E Sbjct: 15 EQGQRLDAFVPVHCKNLSRNACARLIRQGLVTVDKSVKKPSYVLKPGEMVS---VTVPEP 71 Query: 77 EEEAVSPHLQKVAALADV-ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEAR 135 E + VA D+ ILYED I+ +NKP G VH G S + + AL + Sbjct: 72 ETADI------VAQDMDLAILYEDRDIVAVNKPPGMVVHPAPGHSSNTL--VNALLAHCK 123 Query: 136 FLE---------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 L +VHRLD++TSGV+L AK +A L EQL ++ ++K YLAL G + Sbjct: 124 DLSGIGGVQRPGIVHRLDKETSGVILAAKNDAAHAGLSEQLAQRRVEKFYLALAHGVIKE 183 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 + PL ++ V +G+ + + + V+ER+ AT V+ TGRTHQIRV Sbjct: 184 DTGVIDLPLARHPSDRKRMHVSTPAKGREALSLWTVKERFLDATYVKVQIKTGRTHQIRV 243 Query: 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTG----LNRLFLHAAALKFTHPGTGEVMRIEA 302 H HP+ D YG R+ +L + G R LHA + FTHP TGE + + A Sbjct: 244 HLAALHHPVIGDTVYGGRKKRGRLPASVLGKAPPPERQMLHAHIVSFTHPVTGEKLTLTA 303 Query: 303 PMDEGLKRCLQKLRNA 318 P+ + + + L+ LR + Sbjct: 304 PLPQDMAQLLEALRES 319 >UniRef50_C7LWX3 Pseudouridine synthase n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LWX3_DESBD Length = 306 Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 108/295 (36%), Positives = 162/295 (54%), Gaps = 28/295 (9%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 M++E SV++V + +E G+++ +FL +L +P + R++R G+VR++ +R KP ++ Sbjct: 1 MQSERTSVQLVEVGREENGRKLVSFLEARLGTLPTGLFMRLVRTGQVRIDGRRCKPFDRV 60 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 G VR+PPV V +E+ L+ + L V +E+D +LV++K +G VHGG+G + Sbjct: 61 LTGQTVRVPPVTVQRKEKS-----LRDLPGLRGV--FENDEMLVIDKLAGLPVHGGTGWT 113 Query: 121 FGVIEGLRALRPEARFLEL-VHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 V + L+A F+ + VHRLDRDTSG+LL AK LR++H + K YL Sbjct: 114 DSVHDRLKACFAGQAFVPIPVHRLDRDTSGLLLCAKTHDFLRAMHASWPT--LTKGYLCW 171 Query: 180 VRGQW-QSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVT 238 V G W + ++V + L K SGE++ VS +GK + + A +L+ T Sbjct: 172 VEGAWAAAGWRTVVSELAKAQTGSGEQV--VSGQGKRAVSHVHPVLVTAGKSLLLVVLGT 229 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPG 293 GRTHQIRVH GH I D RYG G G L LHAAAL + PG Sbjct: 230 GRTHQIRVHLADCGHAIVGDPRYGQ----------GGG---LLLHAAALSW--PG 269 >UniRef50_Q03WF6 Pseudouridine synthase n=9 Tax=Firmicutes RepID=Q03WF6_LEUMM Length = 312 Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 108/315 (34%), Positives = 164/315 (52%), Gaps = 26/315 (8%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 KI+ D+AG R+D L + ++ + L G + VN ++K YK+ +GD + I Sbjct: 4 KILIHITDQAG-RVDAVLSKENLSYSRTTLSNWLVDGTILVNNHKVKRSYKVVSGDTISI 62 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI---- 124 P E + EA + L + D+ +V+NKP G VH +G S G + Sbjct: 63 TPPETQETKIEAENIPLDIIYEDDDI--------IVVNKPQGMVVHPAAGHSSGTLVNAL 114 Query: 125 ---EGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 L + E R +VHR+DRDTSG+L+VAK A RSL EQL+ Q+ Y ALVR Sbjct: 115 LHHSPLSTINGEFR-PGIVHRIDRDTSGLLMVAKNDKAHRSLSEQLKSHKNQRVYYALVR 173 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 G++ +++AP+ ++ + ++ V + G+ + T F+V +RY TL++ S TGRT Sbjct: 174 GEFTEDSGTIEAPIGRHKIDRKKQ--AVIEGGREAVTHFRVLKRYVGYTLLKVSLETGRT 231 Query: 242 HQIRVHTQYAGHPIAFDDRYGD-REFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 HQIRVH Y GHP+ D YG ++ D GT LN LHA L P TG+ + Sbjct: 232 HQIRVHMSYIGHPVVGDPVYGTAQKLD------GTQLNGQLLHAKTLTLEQPTTGDELSF 285 Query: 301 EAPMDEGLKRCLQKL 315 ++P+ + + L L Sbjct: 286 DSPLPDYFQFALSTL 300 >UniRef50_C1F7V3 Pseudouridine synthase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F7V3_ACIC5 Length = 355 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 112/348 (32%), Positives = 173/348 (49%), Gaps = 44/348 (12%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 K P ++ + A+ AGQR+D +L TQL V +S + +L G+V V+ + + KL Sbjct: 20 KDHAPQIQHFTVPAEAAGQRLDAWLTTQLPDVSRSRVKLLLDDGQVTVDSLKERASLKLR 79 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS- 120 G+ V + R E A P + I+YED ++V+NKP+G VH GSG + Sbjct: 80 GGESVEV-------RGEPAPPPLRAMAEDIPLDIIYEDKDLIVVNKPAGMMVHAGSGATD 132 Query: 121 ------------FGVIEGLRA----LRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLH 164 G E L LRP +VHRLD++TSG+++VA+ +A + L Sbjct: 133 SARNRGTLVNALLGRQEKLSKTGGDLRPG-----IVHRLDKETSGLIIVARNDAAHQRLA 187 Query: 165 EQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKV-- 222 E ++ + K YLALV G ++ A + +++++ R ++ + + + ++V Sbjct: 188 EMFSQREIHKTYLALVHGHIAEDRGTINAAIARDVIRRTRMTTRRTEGARTAISHYRVQR 247 Query: 223 --EERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYG----------DREFDRQL 270 E R+ TLV TGRTHQIRVH GHP+ D YG +R +QL Sbjct: 248 RIETRWGKFTLVSVRIETGRTHQIRVHLSSIGHPVVGDTHYGAPTTIVLPVANRARRKQL 307 Query: 271 -TEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 G L R FLHAA LKF HP + + + +EAP+ L L++L + Sbjct: 308 PAPEGLSLPRNFLHAAELKFPHPRSEKPLHLEAPLPAELVAFLEQLES 355 >UniRef50_C0ZCK6 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZCK6_BREBN Length = 302 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 109/302 (36%), Positives = 160/302 (52%), Gaps = 30/302 (9%) Query: 22 IDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEAV 81 I N LR + K +P+ ++ + + EV ++ + + +AG E+R+ R+ + E + Sbjct: 24 IGNLLREEWK-LPRKQVHLLFQHKEVLLDGEPVAQHVVGKAGQEIRL---RMCKPEALGL 79 Query: 82 SPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL-------RALRPEA 134 P A+ A ILYEDDH+L++NKP G +H ++ L L + Sbjct: 80 DP-----ASEAPEILYEDDHLLIVNKPVGLLLHPTERYHHVTLDHLVSGHFFRTGLEAKV 134 Query: 135 RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAP 194 R VHRLD+DTSGV+L AK A L E LRE+ +++ Y+A V GQ + P Sbjct: 135 RH---VHRLDQDTSGVVLYAKHPWASALLDEMLRERTIKRTYVAYVSGQMPKERGKINEP 191 Query: 195 LLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHP 254 + K+ R RV+ G P+ T ++V+ER+ AT V C TGRTHQIRVH + GHP Sbjct: 192 IGKDRNHGTRR--RVTPNGDPAITHYQVKERFQTATKVECQLETGRTHQIRVHFSHIGHP 249 Query: 255 IAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQK 314 + D+ YG + R+L + R LHAA LKF HP GEV+ + AP+ L +K Sbjct: 250 LLGDELYGGK---REL------IKRQALHAAVLKFEHPFGGEVIEVTAPLPLDLFHLEKK 300 Query: 315 LR 316 LR Sbjct: 301 LR 302 >UniRef50_B6BTN1 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=B6BTN1_9PROT Length = 346 Score = 153 bits (387), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 108/325 (33%), Positives = 167/325 (51%), Gaps = 22/325 (6%) Query: 3 TETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEA 62 T T K + I A G R+D L + +S I +++ + +N + YK+ Sbjct: 2 TNTDFNKKLIIPATFFGSRLDAVLSNLVPEFSRSKIQSMIKNDLIFLNGSHVSQNYKVVG 61 Query: 63 GDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG 122 G+E+ I V E E + ++ ++ D++ YEDD ILVLNKP VH GSG + G Sbjct: 62 GEEIVINGV--IEDEIDVIAENIS-----LDIV-YEDDDILVLNKPYNLVVHPGSGNANG 113 Query: 123 -VIEGLRALRPEARFLE---LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLA 178 ++ GL + L +VHRLD+DT+G+++VAK + +L QL+ K + ++Y A Sbjct: 114 TLLNGLLYYNKDLEKLPRGGIVHRLDKDTTGLMVVAKNEESQNNLISQLQSKSVYREYRA 173 Query: 179 LVRGQ-WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPV 237 +V GQ WQ+ V +Q P+ ++ Q + V GK +ET+ ++ ER+ + T VRC Sbjct: 174 IVWGQIWQNKV--IQKPIGRHPRQRTKMAV-TKVNGKDAETKLEILERFNYHTYVRCLLK 230 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYG------DREFDRQLTEAGTGLNRLFLHAAALKFTH 291 TGRTHQIRVH PI D YG + + L ++ +R LHA AL H Sbjct: 231 TGRTHQIRVHMLDNNSPIVGDKDYGLKKIIPTKNMEMDLLKSIKNFDRQALHAIALGLIH 290 Query: 292 PGTGEVMRIEAPMDEGLKRCLQKLR 316 P T + M+ + E +K L +R Sbjct: 291 PKTNKEMKWTIDLPEDMKELLSVIR 315 >UniRef50_C8P3R0 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3R0_ERYRH Length = 308 Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 101/307 (32%), Positives = 162/307 (52%), Gaps = 28/307 (9%) Query: 19 GQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREE 78 G RID ++ + +S++ ++ G + VN +KP +L+ D V E Sbjct: 18 GMRIDQYMALAVTDYSRSVLQTWIKNGNITVNGNVVKPNLRLKEDDVV----------EY 67 Query: 79 EAVSPHLQKVAALADV-ILYEDDHILVLNKPSGTAVHGG-SGLSF-GVIEGLRALRPEAR 135 E + V D+ I+YEDD ILV+NKP G VH S L+ ++ GL A + Sbjct: 68 EITEEQISIVPVPMDLDIVYEDDAILVVNKPKGLIVHPSPSTLNQPTLVHGLLAHTTQLS 127 Query: 136 FLE------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVK 189 L +VHR+D+DT+G+L+VAK A L E L+++ + ++Y+A+V Q++ Sbjct: 128 DLNGELRPGIVHRIDKDTTGLLVVAKTNEAHEILVEDLKQRLISREYVAIVHHQFKHQSA 187 Query: 190 SVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQ 249 +V AP+ ++ ++ +R+ Q K + T F + ER+ +++RC TGRTHQIRVH Q Sbjct: 188 TVDAPIGRD-PKNRQRMAVTDQNSKQAVTHFYLAERFNDFSVLRCKLDTGRTHQIRVHAQ 246 Query: 250 YAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLK 309 Y HPI GD+ + + T G LHA L THP + EVM EA + + +K Sbjct: 247 YIKHPIV-----GDQTYSYKNTWETNG---QCLHAQKLTLTHPVSKEVMTFEAELPQTMK 298 Query: 310 RCLQKLR 316 ++++R Sbjct: 299 DVIEEIR 305 >UniRef50_A1URK8 Pseudouridine synthase n=2 Tax=Bartonella RepID=A1URK8_BARBK Length = 336 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 107/336 (31%), Positives = 167/336 (49%), Gaps = 49/336 (14%) Query: 16 DEAGQRIDNFLRTQLKG-VPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGD--EVRIPPV 71 D GQRID +L + + +S + ++R+G ++++ K + +P+ K+++ E+ IP + Sbjct: 9 DALGQRIDQWLAKHYQNELSRSRLQTLIREGYLKIDGKLVTEPKTKIKSNQTIELTIPTL 68 Query: 72 RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI------- 124 A E EA+ H IL+EDDHI+V+NKP+G VH G G G + Sbjct: 69 NNAYPEGEAIPLH----------ILFEDDHIIVVNKPAGLVVHPGHGNWTGTLVNALIYH 118 Query: 125 -----EGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG----MQKD 175 G+ +R +VHRLD++TSGV++VAK A + L Q + G + + Sbjct: 119 CGDSLSGIGGVRRPG----IVHRLDKNTSGVIVVAKNDLAHKGLSAQFSDHGRTGVLDRR 174 Query: 176 YLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQE--GKPSETRFKVEERY------- 226 Y AL+ G ++ + A L + ++ V S + + T F V E+Y Sbjct: 175 YHALIWGSPNRNIGVITASLGRARYDRTKQAVIHSHNIYARHAVTHFSVIEKYQTCADKI 234 Query: 227 AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGD------REFDRQLTEAGTGLNRL 280 FA+L+ C TGRTHQIRVH + GHP+ D YG+ FD + EA NR Sbjct: 235 PFASLLECRLETGRTHQIRVHMAHIGHPLVGDTVYGNAFKTKSNRFDSTIKEAIDLFNRQ 294 Query: 281 FLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLR 316 LHAA+L F HP G +M AP+ + + + + Sbjct: 295 ALHAASLTFEHPAKGNIMSFSAPLPQDMAELINHFK 330 >UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3ABZ7_CARHZ Length = 305 Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 108/319 (33%), Positives = 169/319 (52%), Gaps = 34/319 (10%) Query: 11 VAITADEAGQRIDNFLRTQLK-GVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGD--EVR 67 V + ++ +G R+D FL Q + + +S I +++ +G+V VN K YK+ G+ V Sbjct: 7 VVVNSEYSGLRLDKFLAEQEELELSRSFIKKLIEEGKVTVNGLHRKASYKVRGGEIIAVL 66 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 +PP R E +V P + I+YED+ ++V+NK +G VH G G + + Sbjct: 67 LPPPR-----ELSVKPE-----EIPLDIVYEDEDLVVVNKKAGMVVHPAEGNWDGTL--V 114 Query: 128 RALRPEARFLE---------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLA 178 AL + L +VHRLD+DTSG+L+VAK A +SL EQ++EK ++Y Sbjct: 115 NALLYHCQNLSGIGGVLRPGIVHRLDKDTSGLLVVAKNDLAHQSLAEQIKEKKAVREYWT 174 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFA-TLVRCSPV 237 +V G ++ + P+ ++ + + V GK ++T +KV E + TL++ + Sbjct: 175 IVHGYLKNKEGIIDLPIGRH--PRDRQKMAVVSNGKTAQTVYKVLEEFNKGFTLIQAKLL 232 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQIRVH Y GHP+ D +YG + G+ R LHA L F HP +GE+ Sbjct: 233 TGRTHQIRVHFSYLGHPVLGDPKYGHQ-------NNPFGVKRQMLHAIKLSFIHPRSGEL 285 Query: 298 MRIEAPMDEGLKRCLQKLR 316 + AP+ E +R L KLR Sbjct: 286 LEFTAPLPEDFQRVLAKLR 304 >UniRef50_D1CBT6 Pseudouridine synthase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBT6_THET1 Length = 313 Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 102/315 (32%), Positives = 164/315 (52%), Gaps = 28/315 (8%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 ++ I+ ++ G+R+D L +L+ V +S + R + +G + VN KP YKL GD + I Sbjct: 13 LLIISPEDVGERLDTLLAHKLESVSRSQVQRAIEQGTILVNDHPSKPSYKLREGDRILIL 72 Query: 70 PVRVAEREEEAVSPHLQKVAALADV-ILYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGL 127 + + E A+ P + D+ ++YEDD I+V++KP+G VH G ++ L Sbjct: 73 TIPRVPQGEVALIP------SYVDLRVVYEDDKIIVIDKPAGMVVHPSPGHYDNTLVNAL 126 Query: 128 RALRPEARFLE-------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 A P+ L+ +VHRLD+DTSG+++VA+ L L Q++ + + K+Y L Sbjct: 127 IARYPD--LLKQPTDRPGIVHRLDKDTSGLIIVARDLDTLNYLQGQMKARKIFKEYTLLC 184 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 G ++AP+ +++ + + V GK + T + + TL P+TGR Sbjct: 185 CGALDPPEGRIEAPIGRDLRDRTK--MSVIAGGKEAVTEYSTIQSLGKYTLAIARPITGR 242 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH GHPIA D YG+ + GLNR FLHA+ L P GE Sbjct: 243 THQIRVHFAAIGHPIAGDPIYGNCRLE--------GLNRQFLHASRLGVVMP-NGEYKEW 293 Query: 301 EAPMDEGLKRCLQKL 315 +P+ E L++ L+K+ Sbjct: 294 HSPLPEDLRQSLEKV 308 >UniRef50_Q49WX8 Pseudouridine synthase n=1 Tax=Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 RepID=Q49WX8_STAS1 Length = 305 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 103/309 (33%), Positives = 156/309 (50%), Gaps = 27/309 (8%) Query: 16 DEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAE 75 ++ GQRID L ++ I ++ V+VN + IK YK + D + + Sbjct: 12 EDTGQRIDKLLPEYHSEWSRTQIQDWIKASLVKVNDQVIKSNYKTKMNDHIVV------- 64 Query: 76 REEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI--------EGL 127 E+E V +Q D I YEDD + ++ KP G VH +G G + + L Sbjct: 65 TEKETVEADIQPENLNLD-IYYEDDDVAIVYKPKGMVVHPSAGHYTGTLVNGLMYQMKNL 123 Query: 128 RALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 + E R +VHR+D+DTSG+L+VAK A RSL +QL K + + Y+ALV G+ Sbjct: 124 SGINGEIR-PGIVHRIDKDTSGLLMVAKNDVAHRSLVDQLVNKTVTRKYVALVHGKIPHD 182 Query: 188 VKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVH 247 +V AP+ +N ++ + + V +GK + T F V E + TL+ C TGRTHQIRVH Sbjct: 183 YGTVDAPIGRN--KNDRQSMDVVDDGKEAVTHFNVLEHFNKYTLIECQLETGRTHQIRVH 240 Query: 248 TQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEG 307 +Y G+P+ D +YG + + L G LHA + F HP T E + + E Sbjct: 241 MKYIGYPLVGDPKYGPK---KTLDIGGQA-----LHAGIIGFEHPVTHEYIEKSTALPED 292 Query: 308 LKRCLQKLR 316 ++ L +LR Sbjct: 293 FEQLLSELR 301 >UniRef50_Q9JVB6 Ribosomal large subunit pseudouridine synthase D n=39 Tax=Proteobacteria RepID=RLUD_NEIMA Length = 374 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 113/308 (36%), Positives = 167/308 (54%), Gaps = 20/308 (6%) Query: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAERE 77 AG R+D L L +S + +++G V VN K +P+ K+ G+++R+ VR +E E Sbjct: 37 AGGRLDAVLAKLLPDYSRSRLTLWIKEGAVIVNDKPSQPKDKMIGGEQIRVT-VRPSE-E 94 Query: 78 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGLRALRPEARF 136 A P +A I+YEDD ++V+NKP+G VH +G G ++ GL A PE Sbjct: 95 NLAFVPE-----PMALDIVYEDDTVIVVNKPAGLVVHPAAGNWTGTLLNGLLAHCPELSQ 149 Query: 137 LE---LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG--QWQSHVKSV 191 + +VHRLD++TSG+++VAK A SL QL+E+ +++ Y A+ G + +++ Sbjct: 150 IPRAGIVHRLDKETSGLMVVAKTLPAQNSLVWQLQERTVKRIYRAVANGIVPFDGKIETQ 209 Query: 192 QAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYA 251 N L ++ V GKP+ T KV ERY + + CS TGRTHQIRVH + A Sbjct: 210 IGRDPHNRL----KMAVVKFGGKPAVTHVKVLERYLAHSYIECSLETGRTHQIRVHMREA 265 Query: 252 GHPIAFDDRYGD--REFDRQLTEAGTGLN-RLFLHAAALKFTHPGTGEVMRIEAPMDEGL 308 HP+A D YG+ + EA L R LHA L FTHP +GE + EAP+ + + Sbjct: 266 NHPLAGDPVYGNPRHPCGDTVKEAVKSLGARQALHAYRLSFTHPESGETVSFEAPIPDDI 325 Query: 309 KRCLQKLR 316 L LR Sbjct: 326 YHLLSVLR 333 >UniRef50_A9IQ66 Pseudouridine synthase n=5 Tax=Bacteria RepID=A9IQ66_BART1 Length = 334 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 108/333 (32%), Positives = 175/333 (52%), Gaps = 51/333 (15%) Query: 20 QRIDNFLRTQLKGV-PKSMIYRILRKGEVRVNKKRIK-PEYKLEAGD--EVRIPPVRVAE 75 QR+D +L Q V +S + ++R+G ++++ + IK P+ KL+ E+ +P +R AE Sbjct: 14 QRLDQWLAKQYHDVLSRSRLQTLIREGCLKIDGQFIKEPKTKLKPNQIIELEMPNLRDAE 73 Query: 76 REEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI----------- 124 EA+ A ILYEDDH++V+NKP+G VH G+G G + Sbjct: 74 PSAEAI----------ALDILYEDDHVIVINKPAGLVVHPGNGNWTGTLVNALIYHCGNS 123 Query: 125 -EGLRAL-RPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG----MQKDYLA 178 G+ + RP +VHRLD++TSGV++VAK A +SL Q + G + + Y A Sbjct: 124 LSGIGGVKRPG-----VVHRLDKNTSGVMVVAKNDLAHKSLSAQFSDHGRTCALDRRYHA 178 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIV--RVSQEGKPSETRFKVEERY-------AFA 229 L+ G +V ++ A L ++ ++ V + + + + T F + E+Y +FA Sbjct: 179 LIWGTPHRNVWTIDASLGRSPHNRTKQAVVHKQTPHARHAVTHFSLLEKYGTHADSTSFA 238 Query: 230 TLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGD------REFDRQLTEAGTGLNRLFLH 283 +L+ C TGRTHQIRVH + GHP+ D YG+ + L A NR LH Sbjct: 239 SLLECRLETGRTHQIRVHMAHIGHPLIGDTVYGNAFKTKSNTLNPTLKNAIDQFNRHALH 298 Query: 284 AAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLR 316 AA+L F HP +G+V+ AP+ + + + ++ L+ Sbjct: 299 AASLTFEHPSSGKVISFSAPLPQDMAQLIKHLK 331 >UniRef50_A3VN52 Ribosomal large subunit pseudouridine synthase C n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VN52_9PROT Length = 324 Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 99/277 (35%), Positives = 151/277 (54%), Gaps = 28/277 (10%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 M V+ V +T+ EAGQR+D +++ + GV + + + LRKG+VR+N R+K ++++ Sbjct: 1 MGASVSGVQEVTVTSAEAGQRLDRWMKRRFPGVTQGQVQKWLRKGQVRLNGGRVKADHRV 60 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALAD------VILYEDDHILVLNKPSGTAVH 114 E+G+ VR+PP+ E A P + V A+ +++YEDD IL LNKP+G AV Sbjct: 61 ESGEVVRVPPI----DPEAAAPPPSRPVVGPAEAEMMRGLVIYEDDDILALNKPAGLAVQ 116 Query: 115 GGSGLSFGVIEGLRALRPEARF-LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQ 173 GG+ + I+G+ + E LVHRLDRDT GVLL+AK R+ +L ++ + Sbjct: 117 GGA-KTLIHIDGMLDVFGEGEARPRLVHRLDRDTGGVLLLAKSRAVAATLSLAFQQHRIG 175 Query: 174 KDYLALVRGQWQSHVKSVQAPLLKNI-------LQSGERIVRVSQEGKPSETRFK-VEER 225 K Y A+ +G V PL I + G +R +++G+ + T ++ VE Sbjct: 176 KTYWAITKG--------VPHPLFGRIDMRIEKAGEPGREKMRGTEQGQSALTDYQTVETA 227 Query: 226 YAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYG 262 A + P TGRTHQIRVH G PI D +YG Sbjct: 228 GQKAAFLALRPHTGRTHQIRVHLSAIGTPIVGDRKYG 264 >UniRef50_D2LES8 Pseudouridine synthase, RluA family n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LES8_RHOVA Length = 326 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 110/325 (33%), Positives = 164/325 (50%), Gaps = 35/325 (10%) Query: 12 AITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPV 71 A+ D+ G R+D +L+ +P +++ +++R G+VRV+ R+K + +L G EVR+P Sbjct: 7 AVRTDDDGLRLDRWLKKNYPTLPHTLVQKLVRTGQVRVDGGRVKADSRLSTGQEVRVP-T 65 Query: 72 RVAEREEEAVSPHLQKVAALAD--------VILYEDDHILVLNKPSGTAVHGGS------ 117 AE E A P L+ L+ +I++E+D + +LNKP G AV GG+ Sbjct: 66 HFAE-PENAPQPSLKPPPGLSKADRDFIERMIVFENDEMFILNKPFGIAVQGGTKTTRHI 124 Query: 118 -GLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDY 176 GL G+ + RP LVHRLDRDT+G+L VAK R L + + +QK Y Sbjct: 125 DGLLAGMADRFGGERPR-----LVHRLDRDTTGILAVAKDRQTAARLGRLFQTRSVQKIY 179 Query: 177 LALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKP-----SETRFKVEERYAFATL 231 A+ RG + V+A L+K G+R VR ++ G+ + T + V +R A Sbjct: 180 WAITRGIPKPTQGKVEAALVKASGPDGDR-VRKARPGEQELAQHATTFYSVIDRAANMAW 238 Query: 232 VRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGD-REFDRQLTEAGTGLNRLFLHAAALKFT 290 V PVTGR HQ+R H G PI D +YGD E + E +L LHA L Sbjct: 239 VSLKPVTGRQHQLRAHMDILGTPILGDQKYGDGTEIPIENIE-----RKLHLHARRLTLK 293 Query: 291 HPGTGEVMRIEAPMDEGLKRCLQKL 315 P GE+ I AP+ + + + L Sbjct: 294 DPKLGEI-DISAPLPSHIAQTFELL 317 >UniRef50_B2IK20 Pseudouridine synthase n=2 Tax=Beijerinckiaceae RepID=B2IK20_BEII9 Length = 350 Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 117/340 (34%), Positives = 174/340 (51%), Gaps = 41/340 (12%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 S K + + DE G R+D + + +L + S + +I+R G+VRV+ R+K +L AG V Sbjct: 2 SAKTLTVDTDEEGMRLDRWFKRRLPDLSLSHLNKIVRTGQVRVDGARVKTATRLAAGQSV 61 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 R+PP+ + ER E + AL ++IL+ED ++VLNKP G AV GGSG++ + + Sbjct: 62 RVPPLDLPERPLEKPAIVSADAQALREMILFEDRDLMVLNKPFGLAVQGGSGMTHHIDKM 121 Query: 127 LRALRPEARFLE--LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQW 184 L +L P R LVHRLDRDTSGVLLVAK R L E R + +K Y A+V G Sbjct: 122 LASL-PNERGDRPVLVHRLDRDTSGVLLVAKTRRMAAELGEIFRSRQARKIYWAVVEGVP 180 Query: 185 QSHVKSVQAPLLKN--------------ILQSGERIVRVSQEG----KPSETRF----KV 222 + + L K ++G +RV++ G + S T + KV Sbjct: 181 KPAQGRISLYLAKGEGMEDKRGPHGRDAEARAGLEKMRVAKHGEEDARHSVTYYAIVDKV 240 Query: 223 EERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFD--------RQLTEAG 274 R A+ ++ P+TGRTHQ+R H + GHPI D +YG + D R + E Sbjct: 241 PSRLAWLSM---KPITGRTHQLRAHAEAIGHPIIGDPKYGLKPKDDPRRNDPNRAIPE-- 295 Query: 275 TGLNR-LFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQ 313 G+ R L L A L HP G ++ + AP+ +++ Sbjct: 296 -GVERKLHLLARRLILPHP-RGGILDVTAPLPPHMQKTFD 333 >UniRef50_A3ZV48 Pseudouridine synthase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZV48_9PLAN Length = 281 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 99/289 (34%), Positives = 147/289 (50%), Gaps = 31/289 (10%) Query: 49 VNKKRIKPEYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKP 108 ++ + KP +KL AG+++ + P+ E+ V+ HL I+Y+DD I V+NKP Sbjct: 3 IDGEPCKPAHKLSAGEQLIVKPIAAYSDEQIGVNVHLD--------IIYQDDRIAVINKP 54 Query: 109 SGTAVHGGSGLSFGVI-EGLRALRPEARFLE------LVHRLDRDTSGVLLVAKKRSALR 161 +G H G G + EGL+ P+ + +VHRLDRDTSGV+++AK +A Sbjct: 55 AGMITHPAKGHWKGTLTEGLKGQFPQLSTIGGPTRPGIVHRLDRDTSGVIVIAKDDAAHE 114 Query: 162 SLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNI-LQSGERIVRVSQEGKPSETRF 220 L Q +++ +K+Y A+V G + P+ + ++ I R EGK ++T + Sbjct: 115 FLKTQFQDRLTEKEYFAMVIGAPDRDRDLINEPVGPHPKIRERMAIRRGDDEGKDAQTFY 174 Query: 221 KVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREF----------DRQL 270 +V ERY ++ P TGRTHQIRVH +AGHP+ D YG R F DR + Sbjct: 175 EVLERYQGFAAIKALPKTGRTHQIRVHLMHAGHPVLCDPLYGSRRFLSLGELQHDDDRTV 234 Query: 271 TEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNAR 319 LNR LHA + HP GE+ AP+ L+R LR R Sbjct: 235 L-----LNRTALHAHRIAIAHPDDGEIREFIAPLPADLERTQNMLRQLR 278 >UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae RepID=A9BFW4_PETMO Length = 319 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 102/320 (31%), Positives = 167/320 (52%), Gaps = 21/320 (6%) Query: 9 KIVAITADEAGQRIDNFLRTQLK-GVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 ++ + ++ +R+D ++ ++ + +++I + KG++ VN + KP YK++ GDE++ Sbjct: 4 RMYKVEREDEQKRLDIYIAQKMPIEISRNLIQNAITKGQITVNGSQKKPHYKVKQGDEIQ 63 Query: 68 IPPVR-VAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV--- 123 I V E +EE + P + ILYED+ ++V+NKP+G VH + G Sbjct: 64 IDFHELVEETKEENILP-----ENIPLNILYEDEELIVINKPAGLIVHPTPSIKTGTLVN 118 Query: 124 -----IEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLA 178 ++ L + L +VHRLD++TSGVL+VAK + L ++ +E+ K YLA Sbjct: 119 ALMHHVKDLDKTMQDPNRLGIVHRLDKETSGVLVVAKNAFSHHLLSKEFKERKTMKYYLA 178 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA-FATLVRCSPV 237 +V G + + PL ++ + +R V + GK + T +K + + ATLV Sbjct: 179 IVEGTLKEKEGEINLPLGRHPILRHKRAVVYN--GKEAITEYKTLKEFGDLATLVWIRLR 236 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQIRVH +Y G+P+ D YG + ++ L + R LHA L F HP T E Sbjct: 237 TGRTHQIRVHFKYIGNPLIGDSLYGKNKIEKNLQ---IPVGRQMLHALKLGFYHPKTKEW 293 Query: 298 MRIEAPMDEGLKRCLQKLRN 317 M AP+ + K L L N Sbjct: 294 MEFLAPLPDDFKNLLITLTN 313 >UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FYR8_ABIDE Length = 326 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 100/322 (31%), Positives = 165/322 (51%), Gaps = 38/322 (11%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI-- 68 +++ ++++G+RID +L +L +S + ++ +G+VRV K +K +K+ G + I Sbjct: 25 LSVVSEDSGERIDKYLSGKLTEYSRSYLKGLIDEGKVRVEGKPVKSSFKVTEGINISISI 84 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI---- 124 PPV+ AE E + ILYED+ ++++NKP G VH +G G + Sbjct: 85 PPVKEAEIIPENIPLD----------ILYEDEDVILINKPKGMVVHPAAGHYTGTLVNAL 134 Query: 125 -----EGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 + L + E R +VHR+D DT+GV++ K + R + EQL+E +++ Y A+ Sbjct: 135 MYHCRDNLSGINGELR-PGIVHRIDMDTTGVIIACKNDVSHRIIAEQLKEHSIKRKYQAI 193 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA------FATLVR 233 V G ++ ++ + ++ ++ + + V +GKP+ T ++V Y FA + Sbjct: 194 VYGVFKDEEGRIEGSIGRS--KTDRKKMAVIPDGKPAVTHYRVIRNYTSPNGNNFAH-IE 250 Query: 234 CSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPG 293 C TGRTHQIRVH GHP+ D+ YG + +L LHA L F HP Sbjct: 251 CELETGRTHQIRVHMTSIGHPLLGDEIYGAAKNPFKLDGQA-------LHAEMLGFVHPR 303 Query: 294 TGEVMRIEAPMDEGLKRCLQKL 315 TGE M AP+ E + L KL Sbjct: 304 TGEYMEFHAPLPEYFSKLLTKL 325 >UniRef50_D0XS67 Pseudouridine synthase n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XS67_9CAUL Length = 350 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 107/317 (33%), Positives = 163/317 (51%), Gaps = 18/317 (5%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 +I+ + E G R+D + R + + + ++ R G++RV+ RIKPE +L AG VR Sbjct: 24 AQILYVAEAEDGIRLDRWFRRRWPHLSNIQVQKMARGGQIRVDGARIKPEGRLTAGAAVR 83 Query: 68 IPPVRV----AEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV 123 +PP+ A E A++P +A +++YEDD ++ LNKP G AV GG+ + V Sbjct: 84 VPPIPEPIVRAPGEHMALTP--ADIAFAKSMVIYEDDLVIALNKPWGLAVQGGTKTTRHV 141 Query: 124 IEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 L A LVHRLDRDTSGVLL+ K A + L + +K Y A+V G Sbjct: 142 DRLLSAWGEGMERPRLVHRLDRDTSGVLLLGKGPEAAKRLAGAFARRQAKKTYWAIVMGL 201 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQE----GKPSETRFKVEERYAF-ATLVRCSPVT 238 + + L K+ + E I+R + +P+ET + V A A+ + P T Sbjct: 202 PKPADGQISVHLKKSGINDYE-IMRPADPKDPGAEPAETAYAVISHAAQRASWMALRPFT 260 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM 298 GRTHQ+R H + GHPI D +YGD + QL +G +L LHA ++ HP G ++ Sbjct: 261 GRTHQLRAHMKAIGHPILGDPKYGD-DASTQL----SGPLKLQLHARRIELDHPAGGTLV 315 Query: 299 RIEAPMDEGLKRCLQKL 315 +EAP+ L+ + Sbjct: 316 -VEAPISAELRAGFEHF 331 >UniRef50_D1ASB1 Pseudouridine synthase n=1 Tax=Anaplasma centrale str. Israel RepID=D1ASB1_ANACI Length = 299 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 86/246 (34%), Positives = 139/246 (56%), Gaps = 9/246 (3%) Query: 19 GQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPV-RVAERE 77 G R+D +LR L GV +S I R+LR+GE+ +N +++ ++ GD + I R+ RE Sbjct: 13 GVRVDRYLRGLLPGVTQSFIERLLRRGEILLNNTKVRSSARVSNGDVLSIKHADRIVMRE 72 Query: 78 EEAVS-PHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARF 136 +E H+ + +++ ILYED +++ +NKP+G +V GGS + + + L +RP Sbjct: 73 KEIRRLQHVPLLDLISNNILYEDQNVIAINKPAGVSVQGGSKVGVSIGDLLDKIRPGG-C 131 Query: 137 LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLL 196 +VHRLD+DTSGVL++A+ R L + RE+ +QK+Y+A+ +G S V P+ Sbjct: 132 CRIVHRLDKDTSGVLVLARDLDVARCLAREFRERRVQKEYIAITKGVPHSASGEVNTPIF 191 Query: 197 KNILQ-SGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPI 255 + +GER++ K ++T F V +V PVTGR HQ+R+H G PI Sbjct: 192 YKVQSATGERMLE-----KDAKTFFSVTRVLGNFAVVLLRPVTGRKHQLRIHMSQIGCPI 246 Query: 256 AFDDRY 261 D +Y Sbjct: 247 VGDSKY 252 >UniRef50_Q01Q94 Pseudouridine synthase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Q94_SOLUE Length = 296 Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 110/318 (34%), Positives = 155/318 (48%), Gaps = 39/318 (12%) Query: 13 ITADEA--GQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 TAD A GQRID +L L +S I ++ VRVN +K Y L A D V + Sbjct: 3 FTADPADTGQRIDQWLHAHLPDFSRSRIQEWIKSARVRVNGAAVKTSYTLRAADAVEV-- 60 Query: 71 VRVAEREEEAVSPHLQKVAALADV-ILYEDDHILVLNKPSGTAVHGGSGLS--------- 120 E A P L A + ILYED ++ ++KP+G VH G+G+ Sbjct: 61 -------EPADPPPLNATAEDIPLRILYEDADVVAIDKPAGMVVHAGAGVHSGTLVNALL 113 Query: 121 --FGVIEGLRA-LRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 F + G+ LRP +VHRLDR TSGVLLVAK +A + L Q + ++K YL Sbjct: 114 HRFATLSGVGGPLRPG-----IVHRLDRFTSGVLLVAKNDAAHQKLAAQFSGREIEKVYL 168 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPV 237 ALV G + ++ P+ ++ + R++ EG+ + + ++V R+ TL+ Sbjct: 169 ALVHGTVKPETGRIERPIARDPVHRARMTARLA-EGRAAWSEYRVLRRFPDFTLLEVRIG 227 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQIRVH HP+ D YG A L R FLHA ++F P +G Sbjct: 228 TGRTHQIRVHLASIRHPVVGDTLYG--------APAQPLLGRYFLHAHRIRFHLP-SGRE 278 Query: 298 MRIEAPMDEGLKRCLQKL 315 M IE+P+ L+ L L Sbjct: 279 MLIESPLPPDLEAWLGTL 296 >UniRef50_A7HL94 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A7HL94_FERNB Length = 317 Score = 147 bits (370), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 107/310 (34%), Positives = 154/310 (49%), Gaps = 27/310 (8%) Query: 4 ETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEA 62 +VK+ + R+D FLR LK VP S IY+ LR G+V++N K++K P KL Sbjct: 12 NNSNVKVWTVNESNYFSRVDKFLRKMLKNVPLSAIYKFLRTGKVKINGKKVKDPSTKLNI 71 Query: 63 GDEVRIPPVRVAEREEEAVSPHLQKVAALADV-----ILYEDDHILVLNKPSGTAVHGGS 117 GD V E EE++ + ++ L V I+YED+ I+ +NKP+G +VH G Sbjct: 72 GD--------VIELIEESLDNYSREYLELKPVKMDLDIIYEDELIIAINKPAGVSVHPGK 123 Query: 118 GLSF-GVIEGLRALRPEARFLE-LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKD 175 ++ +IEGL E F LVHRLD++TSGVL+VAK RS R L E + + ++K Sbjct: 124 NVNKPSIIEGLIHYGKENGFEPFLVHRLDKETSGVLIVAKDRSVARELSEIISSRNVEKI 183 Query: 176 YLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCS 235 Y ALV G+ Q ++ P+ G+ VS R K+ + + Sbjct: 184 YNALVFGKVQK--VTINTPI------DGQD--AVSHIIPIEYFRVKLNGISVELSFLEVE 233 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTG 295 TGR HQIR H PI D YG+ +R+ ++ GL R FLH +KF G Sbjct: 234 IETGRKHQIRKHLSSINCPIVGDKDYGNFRLNREFSK-NFGLKRHFLHCKQMKFVFNGRN 292 Query: 296 EVMRIEAPMD 305 + + P D Sbjct: 293 YNILAQLPKD 302 >UniRef50_C6WV38 Pseudouridine synthase n=3 Tax=Proteobacteria RepID=C6WV38_METML Length = 368 Score = 147 bits (370), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 108/323 (33%), Positives = 173/323 (53%), Gaps = 32/323 (9%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + I++D G R+D L+ L +S + ++ G V V+ K + K+ G++V + Sbjct: 15 LTISSDLGGLRLDVALQRLLPEHSRSRLQSWIKSGLVTVDGKASTAKTKVWGGEKVSV-- 72 Query: 71 VRVAEREEEAVSPHLQKVAALADV---ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 + V P + A D+ I+YEDDHILV+NKP+G VH +G G + L Sbjct: 73 -------DVQVKPESRAFIA-QDIPLDIVYEDDHILVVNKPAGMVVHPAAGNWDGTL--L 122 Query: 128 RALRPEARFLE------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 AL A L +VHRLD++TSG+L+VAK +A L QL+ + ++++Y A+V Sbjct: 123 NALLFHAPQLHDVPRAGIVHRLDKETSGLLVVAKTLNAQTHLVRQLQARTVKREYRAIVW 182 Query: 182 GQ-WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 GQ W++ V V PL ++ + +++ GKP+ TR+++ ER++ T +RC+ TGR Sbjct: 183 GQLWRNGV--VDQPLGRD--PRSRTKMAINRMGKPAITRYEILERFSVQTYLRCNLETGR 238 Query: 241 THQIRVHTQYAGHPIAFDDRYG------DREFDRQLTEAGTGLNRLFLHAAALKFTHPGT 294 THQIRVH Q+ P+ D YG R + L +A + +R LHA L HP T Sbjct: 239 THQIRVHMQHLKAPLVGDPVYGFRGIVPIRAMTQTLRDAVSQFHRQALHAIKLGLVHPAT 298 Query: 295 GEVMRIEAPMDEGLKRCLQKLRN 317 E M + + + +K L+ +R+ Sbjct: 299 NEFMEWQIELADDMKVLLEAMRH 321 >UniRef50_Q2GKG0 Pseudouridine synthase n=4 Tax=Anaplasma RepID=Q2GKG0_ANAPZ Length = 297 Score = 147 bits (370), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 95/272 (34%), Positives = 154/272 (56%), Gaps = 16/272 (5%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPV-RVAEREEE 79 R+D ++R+ L GVP++++ ++LRKGE+R+N + +++ GD V I V ++A R +E Sbjct: 2 RLDRYVRSILPGVPQALVEKLLRKGEIRLNSSKALASSRVQRGDTVSIRNVDKIASRSKE 61 Query: 80 AVSPHLQKVAAL-ADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLE 138 A H + L +D I+Y+D++I+ +NKP+G V GG+ +S + + L + P + L Sbjct: 62 AKEVHDDALLRLVSDNIIYKDENIIAINKPAGVNVQGGTKVSISLSDLLNKIIPGEQ-LH 120 Query: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKN 198 +VHRLDRDTSGVL++A+ +S R L E+LR + ++K+Y+A+ +G + P+ Sbjct: 121 IVHRLDRDTSGVLIIARGQSIARILSEELRFRRVRKEYIAVTKGVPAFSKGEITMPIYCK 180 Query: 199 ILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFD 258 QSG + +E K + + +R+A L SPVTGR HQ+R+H PI D Sbjct: 181 -KQSGVGETLIPKEAKTVFSVLQSSKRHAVMLL---SPVTGRKHQLRIHLSQFCCPIIGD 236 Query: 259 DRYG-DREFDRQLTEAGTGLNRLFLHAAALKF 289 +Y D E + N L LHA F Sbjct: 237 TKYSKDTEVQQH--------NSLHLHAFRTSF 260 >UniRef50_A3EQJ0 Pseudouridine synthase n=1 Tax=Leptospirillum rubarum RepID=A3EQJ0_9BACT Length = 339 Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 112/352 (31%), Positives = 168/352 (47%), Gaps = 65/352 (18%) Query: 1 MKTETPSVKIVA-----ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK 55 + E P+ I++ + E +R+D +L G +S + R+L + V +N Sbjct: 6 LTEEDPNSNILSYREFLVPRGEQPKRLDIYLSKNCLGFTRSRVQRLLEEKLVTINDIYPA 65 Query: 56 PEYKLEAGDEVR--IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAV 113 +K+ GD +R IPP R + E + L+ ILYED+ ++V++KP G V Sbjct: 66 SSHKVRGGDRIRVLIPPPRSQTAQPENI--RLE--------ILYEDEDLIVISKPPGLVV 115 Query: 114 HGGSGLSFG-VIEGL-----------------------RALRPEARFLELVHRLDRDTSG 149 H G S G ++ GL R LR LVHRLD+DTSG Sbjct: 116 HPAPGHSSGTLVNGLLFHFQSQGDEQKKGEPEEEEEAERPLR-----AGLVHRLDQDTSG 170 Query: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRV 209 V++V K S + L Q +++ + K YLALV+G + AP+ ++ + VR Sbjct: 171 VMVVGKTESVVLDLMNQFKDRSVSKKYLALVKGILPKKRGEINAPIGRSTHDRKKFTVR- 229 Query: 210 SQEGKPSETRFKVEERY-AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYG-----D 263 Q+GKPS TR++V E Y +L+ + +TGRTHQIRVH +Y G P+ D YG + Sbjct: 230 -QDGKPSVTRYRVLETYHENYSLLEVTLLTGRTHQIRVHFRYLGFPLLGDAVYGSKGTEN 288 Query: 264 REFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 + F RQ+ LHA L F HP + M EAP+ L++L Sbjct: 289 KNFPRQM-----------LHAWKLSFQHPSSNSKMEFEAPLPPDFVSALERL 329 >UniRef50_A8Z5T0 Pseudouridine synthase n=3 Tax=Candidatus Sulcia muelleri RepID=A8Z5T0_SULMW Length = 337 Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 97/310 (31%), Positives = 164/310 (52%), Gaps = 27/310 (8%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEA 80 RID +L+ L ++ I +I+ KG V VN IK Y ++ D + I ++ Sbjct: 38 RIDTYLKFILHKKNRNFIQKIIEKGFVYVNNILIKKNYIVKINDVIEI----FLPEGKKN 93 Query: 81 VSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGL-SFGVIEGLRALRPEARFLE- 138 + P K+ I YED++++++NK SG VH G G S +I GL + + + Sbjct: 94 IIPENLKIN-----IFYEDEYVIIINKQSGLVVHPGKGNESMTLINGLHFYFLKKKNIYN 148 Query: 139 ----LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAP 194 LVHR+D+ TSG++LVAK ++ L +++Q +++ Y+ LV G ++K+ + Sbjct: 149 KIPILVHRIDKGTSGLILVAKDKNILEKIYKQFYINHIKRKYITLVWG----YIKNNKGT 204 Query: 195 LLKNILQSGERIVRVSQ-----EGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQ 249 ++ NI +S + + ++ GK S T +KV ER+ + TL++C+ TGRTHQIRVH + Sbjct: 205 IICNIGRSLKNRIYMNVFPNGIYGKFSITHYKVLERFKYVTLLKCTLETGRTHQIRVHLK 264 Query: 250 YAGHPIAFDDRY-GDREFDRQLTEAGTGLNRLF--LHAAALKFTHPGTGEVMRIEAPMDE 306 Y GHPI D Y G+ F + +N + LHA +++ HP + P+ + Sbjct: 265 YIGHPILNDKDYGGNHTFKEKKNIKKLFINMKYQALHAYYIEYIHPIYRKKNYFICPIPD 324 Query: 307 GLKRCLQKLR 316 +K ++ LR Sbjct: 325 RIKFLIKNLR 334 >UniRef50_A0Q1S9 Pseudouridine synthase n=32 Tax=Clostridium RepID=A0Q1S9_CLONN Length = 301 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 99/323 (30%), Positives = 162/323 (50%), Gaps = 35/323 (10%) Query: 4 ETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAG 63 E ++ + + DE R++++L+ I + R+G ++VN + ++ Y L+ Sbjct: 3 EKNNILKIKVQIDEEEIRLNHYLKNH-ANCSSRFIRKAAREGRIKVNNENVRLSYMLKND 61 Query: 64 DEVRIPPVRVAEREEEAVSP---HLQKVAALADVILYEDDHILVLNKPSGTAVH-----G 115 D + + ++ E + + P HL ++YED I+V+NKP G VH Sbjct: 62 DVIEL---QINREENQDIVPEKMHLD--------VIYEDKDIVVINKPKGIVVHPTKRHQ 110 Query: 116 GSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKD 175 LS GV+ + + E + LV+RLD DTSG++L+AK + +L +++ K Sbjct: 111 NGTLSNGVLYYFKE-KNENSIVRLVNRLDMDTSGLVLIAKNAYSHMALSRDMQKDDFVKS 169 Query: 176 YLALVRGQWQSHVKSVQAPLLKNILQSGERIVR--VSQEGKPSETRFKVEERYAFATLVR 233 YLA+V G + + P I + GE +R + + G+ S TRFKV E Y A LV Sbjct: 170 YLAIVHGNLKEKSGVINKP----IYRVGEGTLRRVIDERGQRSVTRFKVVESYEDADLVE 225 Query: 234 CSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPG 293 + TGRTHQIRVH GHPI D YG E + ++R LHA L+ HP Sbjct: 226 LTLETGRTHQIRVHLSSIGHPIYGDSLYGKEEHEY--------IDRQALHAYKLQIPHPK 277 Query: 294 TGEVMRIEAPMDEGLKRCLQKLR 316 G ++++E+ + + +K + KL+ Sbjct: 278 DGRILKLESDLPDDMKNLISKLK 300 >UniRef50_D2R7T3 Pseudouridine synthase, RluA family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7T3_9PLAN Length = 355 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 110/322 (34%), Positives = 152/322 (47%), Gaps = 31/322 (9%) Query: 17 EAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKR--IKPEYKLEAGDEVRIPPVRVA 74 EA R+D FL +L + + R++ G V +N R +K Y++ GD V I Sbjct: 45 EADGRLDQFLALRLHRYSRMQLRRVIDAGGVLLNGSRAKVKVAYRVSTGDRVSI-----V 99 Query: 75 EREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA 134 E + P+ +K+ IL+ED+H++ +NKP G VH G G + A Sbjct: 100 LPEMPSAGPNPEKIPL---DILFEDEHLIAVNKPPGMVVHPARGHWSGTLTSALAFH--- 153 Query: 135 RFLEL-----------VHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 F +L VHRLDRDTSGV++VAK SL Q ++ K+Y A+ G Sbjct: 154 -FQQLSTVGGQHRPGIVHRLDRDTSGVIIVAKTDPVHFSLAAQFADRTTAKEYFAITAGV 212 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQE-GKPSETRFKVEERYAFATLVRCSPVTGRTH 242 V P+ + + +R + +ET F V ER+A V C P TGRTH Sbjct: 213 PDRDRDVVSQPIGIHPFHREKMAIRPGHSTSRDAETMFHVLERFAQHAAVECLPKTGRTH 272 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQ--LTEAGTG---LNRLFLHAAALKFTHPGTGEV 297 QIRVH + P+ D YG R Q L G+ LNR LHA L HP TGE Sbjct: 273 QIRVHLAHVRTPVLCDKLYGGRAEITQGELVRDGSTEVVLNRQALHARKLSINHPKTGER 332 Query: 298 MRIEAPMDEGLKRCLQKLRNAR 319 + IEAP+ L+R L LR+ + Sbjct: 333 LTIEAPLPADLQRVLDLLRSTK 354 >UniRef50_C4XN86 Pseudouridine synthase n=2 Tax=Desulfovibrio RepID=C4XN86_DESMR Length = 339 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 100/296 (33%), Positives = 154/296 (52%), Gaps = 38/296 (12%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQL-KGVPKSMIYRILRKGEVRVNKKRIKPEYK 59 MKT V+ + +TA EAGQ++ +L +L G+P + + + +R G+VR++ KR KP + Sbjct: 1 MKT---PVQHITVTAAEAGQKLLQYLARRLGPGLPLAALQKCIRTGQVRLDGKRCKPFDR 57 Query: 60 LEAGDEVRIPPVRVAEREEEAVSPHLQKVAAL---------------------------- 91 + G VR+PP + E + ++AA+ Sbjct: 58 VAQGQVVRVPPFELDEAGPAGGALGAPELAAVPTGRPKPGPLSVKTSPSAAHRTGGRAMP 117 Query: 92 ADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLEL-VHRLDRDTSGV 150 A IL+EDD +LV+ KP+G VH GSG +F + L A P A F HRLDRDT+G+ Sbjct: 118 ALEILHEDDELLVVVKPAGLPVHPGSGHTFALTTLLHAHAPHAPFKPTPAHRLDRDTTGL 177 Query: 151 LLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSG----ERI 206 LLVAK LR+LHE +++ ++KDY A V G+W ++ + + +SG ER+ Sbjct: 178 LLVAKSYRRLRALHEAMQDGTLRKDYFAWVWGKWLLGEENEWVTMRDALAKSGGPGRERV 237 Query: 207 VRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYG 262 ++GK + + ++ R A+LV TGRTHQIR G+P+ D +YG Sbjct: 238 T-AGEDGKEAVAKVRLISRAPTASLVEVRLETGRTHQIRAQLASRGYPLVGDAKYG 292 >UniRef50_Q2G4F0 Pseudouridine synthase n=12 Tax=Alphaproteobacteria RepID=Q2G4F0_NOVAD Length = 436 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 109/307 (35%), Positives = 162/307 (52%), Gaps = 16/307 (5%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 V+ I D+AG R+D + + L V + + R R G++R++ KR + +LEAG +R Sbjct: 11 VRQFTIGKDDAGARLDRWFKRHLPQVGFATVSRWARTGQIRIDGKRADVDTRLEAGQILR 70 Query: 68 IP-----PVRVAEREEEAVSPHLQKVAALADVILYEDDH-ILVLNKPSGTAVHGGSGLSF 121 +P PV + E A P ++ LA+ ++ E D +VLNKP G A GGSG Sbjct: 71 VPPGNATPVGTPGKGERARKPLTEEQIQLAESMVLEKDRAAIVLNKPPGLATQGGSGTHE 130 Query: 122 GVIEGLRAL--RPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 V L A EAR LVHRLD+DTSGVLL+A+ + ++ + +K Y AL Sbjct: 131 HVDGLLDAYVNEGEAR-PRLVHRLDKDTSGVLLIARTPGSAAFFSKRFSCRSARKIYWAL 189 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGER-IVRVSQEGKPSETRFKVEERYA-FATLVRCSPV 237 V G ++ PL K GE+ +V S +G+ + +R++V R A V P+ Sbjct: 190 VVGVPDVKDGLIELPLAKQPGTGGEKMMVDESGQGQSARSRYRVISRAGNAAAWVELQPL 249 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQ+RVH GHPI D +YG + LT G+ ++ LHA L+ HP G++ Sbjct: 250 TGRTHQLRVHMAAIGHPIVGDGKYGGQAA--FLT--GSISRKMHLHARRLRIEHP-EGDM 304 Query: 298 MRIEAPM 304 + + AP+ Sbjct: 305 IDVTAPL 311 >UniRef50_A9BMW0 Pseudouridine synthase n=10 Tax=Comamonadaceae RepID=A9BMW0_DELAS Length = 356 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 108/315 (34%), Positives = 166/315 (52%), Gaps = 29/315 (9%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKK-RIKPEYKLEAGDEVRIP 69 + + + G R D L + +S + ++L +G V +N + +KP K+ AGD + Sbjct: 49 ITVPPAQHGLRADKVLAECVAEFSRSYLQQLLAQGAVTLNGRVLVKPATKVAAGDRM--- 105 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGLR 128 V E S Q DV+ YED+H+LV+NKP+G VH G G ++ GL Sbjct: 106 ---VLEMRPTQQSMAFQPEDMALDVV-YEDEHLLVVNKPAGLVVHPAPGNWTGTLLNGLL 161 Query: 129 ALRPEARFLE---LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQW- 184 P+AR + +VHRLD+DTSG+++VA+ R+A+ +L + + + + YLAL W Sbjct: 162 GRDPKAREVPRAGIVHRLDKDTSGLMVVARSRAAMDALVAMIAARDVSRQYLALAHKAWG 221 Query: 185 -QSHVKSVQAPL---LKNILQSGERIVRVSQE-GKPSETRFKVEERYAFATLVRCSPVTG 239 + H + V AP+ +N L+ +V ++Q GK + T + +LVRC+ TG Sbjct: 222 PRKH-REVDAPIGRDPRNRLRMA--VVDLAQHAGKTARTDIDLLAGNEEVSLVRCTLHTG 278 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RTHQIRVH GHP+ D YG + EAG G+ R LHA L FTHP TG+ + Sbjct: 279 RTHQIRVHMASLGHPLVADAVYGGK-------EAG-GMARQALHAFRLAFTHPMTGQALV 330 Query: 300 IEAPMDEGLKRCLQK 314 + AP+ + + L+ Sbjct: 331 LRAPLPPDMAQALEN 345 >UniRef50_B0N6U2 Pseudouridine synthase n=5 Tax=Bacteria RepID=B0N6U2_9FIRM Length = 328 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 96/298 (32%), Positives = 161/298 (54%), Gaps = 21/298 (7%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 +K + IT ++A QRID +L+ L P + IY++ RK +++VN K++ +Y L DEV Sbjct: 7 MKKLKITENDANQRIDKYLKKLLVNAPNNFIYKMFRKKDIKVNGKKVDEKYILSLDDEVE 66 Query: 68 IPPV--RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG------- 118 + + E E + K + +LYED H+L++ KP+G VH + Sbjct: 67 MFLYDDKFKEFTETKSIYEVNKTFS----VLYEDKHVLIVFKPAGLLVHEDANESINTLT 122 Query: 119 ---LSFGVIEGLRALRPEARFLE-LVHRLDRDTSGVLLVAKKRSALRSLHEQLREK-GMQ 173 LS+ + L E F+ VHRLDR+TSG+++ K +AL++L+E ++++ ++ Sbjct: 123 NQVLSYLASKNELDLSRENTFMPGPVHRLDRNTSGIVIFGKTLAALQNLNEMIKQRHCIE 182 Query: 174 KDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPS-ETRFKVEERYAFATLV 232 K YL + RGQ +H +++ ++K Q+ ++V+ G + ET + + +LV Sbjct: 183 KKYLTICRGQL-NHQRNLHGYMIKLENQAQVKLVKKDYPGALTMETIVRPLKYNCDYSLV 241 Query: 233 RCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFT 290 + +TGR HQIRVH HPI D +YGD E ++ + + GLN LHA +KF Sbjct: 242 EVTLITGRMHQIRVHLSSIEHPIIGDRKYGDFELNKYIKKT-FGLNNQLLHAYKIKFV 298 >UniRef50_B8E0R4 Pseudouridine synthase n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E0R4_DICTD Length = 303 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 105/324 (32%), Positives = 166/324 (51%), Gaps = 45/324 (13%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI---P 69 I + +RID +L ++ + +S I ++ K ++VN+K IK YK++ GD + + P Sbjct: 8 IYVEGESERIDKYLSKKVP-LSRSQIQDLIEKELIKVNEKPIKNSYKVKLGDRIEVIIPP 66 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG---------LS 120 PV E V P + I+YED+ ++++NKP G VH G L Sbjct: 67 PV------ETEVKPQDIPIE-----IVYEDEDMVIINKPKGMVVHPAHGHYNDTLVNALL 115 Query: 121 FGV--IEGLRA-LRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 + V + G+ LRP ++HRLD+DT+G+L++AK + + L EQL+ + +++ Y Sbjct: 116 YRVKDLSGIGGELRPG-----IIHRLDKDTTGLLIIAKNDLSHQKLSEQLKNRTLRRTYW 170 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPV 237 AL G+ K ++AP+ ++ + + + + GK + T FKV ER+ TL+ Sbjct: 171 ALCEGEIPWEEKRIEAPIGRHPINRKK--MAIVPYGKIAITNFKVLERFKGYTLISADLE 228 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYG--DREFDRQLTEAGTGLNRLFLHAAALKFTHPGTG 295 TGRTHQIRVH + G PI D+ YG D++F G+ LHA + F HP G Sbjct: 229 TGRTHQIRVHISHLGFPIVGDEVYGRIDKKF---------GVKGQLLHAKKVSFIHPTKG 279 Query: 296 EVMRIEAPMDEGLKRCLQKLRNAR 319 M E + E K+ L LR R Sbjct: 280 IPMEFEIDLPEEFKKVLTLLREKR 303 >UniRef50_B6AN83 Pseudouridine synthase n=2 Tax=Leptospirillum RepID=B6AN83_9BACT Length = 340 Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 109/341 (31%), Positives = 164/341 (48%), Gaps = 60/341 (17%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 S + + E +R+D +L G +S + R+L + V +N +K+ GD + Sbjct: 17 SCREFLVPRGEQPKRLDIYLSRNCLGFTRSRVQRLLEEKLVTINDIYPASSHKIRGGDRI 76 Query: 67 R--IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-V 123 R IPP R + E + HL+ ILYEDD ++V++KP G VH G + G + Sbjct: 77 RVLIPPPRSQAAQPEDI--HLE--------ILYEDDDLIVISKPPGLVVHPAPGHASGTL 126 Query: 124 IEGL-----------------------RALRPEARFLELVHRLDRDTSGVLLVAKKRSAL 160 + GL R LR LVHRLD+DTSGV++V K + + Sbjct: 127 VNGLLFHFQSQGDEQKKGEPEEEEEAERPLR-----AGLVHRLDQDTSGVMVVGKSETVV 181 Query: 161 RSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRF 220 L Q +++ + K YLALV+G + AP+ ++ + VR Q+GKPS TR+ Sbjct: 182 LDLMNQFKDRSVSKKYLALVKGILPKKRGEINAPIGRSTHDRKKFAVR--QDGKPSLTRY 239 Query: 221 KVEERY-AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYG-----DREFDRQLTEAG 274 +V E Y +L+ + +TGRTHQIRVH ++ G P+ D YG +R F RQ+ Sbjct: 240 RVLETYHENYSLLEVTLLTGRTHQIRVHFRHLGFPLLGDAVYGSKGMENRNFPRQM---- 295 Query: 275 TGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 LHA L F HP + M EAP+ +++L Sbjct: 296 -------LHAWKLAFQHPRSAAKMEFEAPLPPDFVSAMKRL 329 >UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1I3F8_DESAP Length = 309 Score = 144 bits (362), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 100/304 (32%), Positives = 158/304 (51%), Gaps = 27/304 (8%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEA 80 R+D FL Q + ++ I +++ V VN + + +++ GD V + +V + E Sbjct: 17 RLDVFLAGQNPELSRARIQKLISLELVTVNGRPARASHRVRGGDCVEL---KVPDPETPR 73 Query: 81 VSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLE-- 138 + P A+ + +ED +LV+NKP G VH G G + + AL R L Sbjct: 74 IEPE-----AIPLEVCFEDPDVLVVNKPRGLVVHPAVGHYSGTL--VNALLHHCRDLSGI 126 Query: 139 -------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSV 191 +VHRLDRDTSG+L+VAK +A +L QL+++ + + Y ALV G+ + +V Sbjct: 127 NGILRPGIVHRLDRDTSGLLMVAKNDAAHLALAGQLKDRAVLRRYTALVHGRPRRETGTV 186 Query: 192 QAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYA 251 AP+ ++ + +R+ + G+ + T ++V R+ +L+ + TGRTHQIRVH + Sbjct: 187 DAPIGRHP-RDRQRMAVTPRSGRAARTHYRVVRRFDKFSLLELTLDTGRTHQIRVHMAHV 245 Query: 252 GHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRC 311 GHP+ D +YG GL FLHA L F HP TGEV+ EAP+ L Sbjct: 246 GHPLVGDLKYGH-------ARPELGLEGQFLHAGTLGFRHPRTGEVLVFEAPLPSELAAV 298 Query: 312 LQKL 315 L++L Sbjct: 299 LERL 302 >UniRef50_C8NZX3 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZX3_ERYRH Length = 298 Score = 144 bits (362), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 103/304 (33%), Positives = 159/304 (52%), Gaps = 37/304 (12%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVR 72 IT+ G RID+FL L + +S I +++ G + N K YK + D + + Sbjct: 6 ITSKTLGLRIDHFLNEHLD-LSRSKIASMIKDGTILCNDMPTKANYKTKLNDCITASTYQ 64 Query: 73 VAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGL-SFGVIEGL---- 127 + + E V + ++YED+++LV+NKP G VH G+G+ S ++ GL Sbjct: 65 IKTLDIEPVKMDID--------VVYEDEYLLVVNKPRGLVVHPGNGVKSDTLLHGLLYYL 116 Query: 128 -----RALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 +RP LVHR+DR+TSG+L++AK + L EQL +K M + Y ALV G Sbjct: 117 NSNCDHYIRPG-----LVHRIDRNTSGLLVIAKDDKTHQFLAEQLLDKTMNRTYYALVHG 171 Query: 183 QW-QSHVKSVQAPLLKNILQSGERIVRVSQE-GKPSETRFKVEERYAFATLVRCSPVTGR 240 Q+HV + AP+ + +S +I+ V+Q KP+ T F+ E Y ++L+ C TGR Sbjct: 172 VLPQAHVL-IDAPIGPD--KSNTKIMTVNQARSKPARTHFEKIETYINSSLICCKLETGR 228 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH +A P+ D +YG + T +L AA L+F HP ++M+ Sbjct: 229 THQIRVHALHANIPLHGDPQYGH--------PSDTDKTGQYLCAARLEFVHPKYLKLMQF 280 Query: 301 EAPM 304 E P+ Sbjct: 281 EIPL 284 >UniRef50_A9BJA7 Pseudouridine synthase n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BJA7_PETMO Length = 303 Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 105/308 (34%), Positives = 158/308 (51%), Gaps = 33/308 (10%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPE-YKLEAGDEVRIPPVRVAEREEE 79 R+D F+R + IY ++RKG V+VN+KR+K Y LE GD V+I + E + E Sbjct: 15 RLDTFIRKNYPEIKLGAIYGLIRKGFVKVNEKRVKKNNYILEIGDNVKII---LDENKLE 71 Query: 80 AVS----PHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGLRALRPEA 134 +S P L+ D+I YED +LV+NKP+ +VH GS +IEG+ Sbjct: 72 ELSRPTQPSLKARPVSFDII-YEDKDLLVINKPAKVSVHPGSKEEMATIIEGVMHYSRGE 130 Query: 135 RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAP 194 LVHRLD+ TSGV++VAK + R L + ++ + +K YL L+ G Sbjct: 131 FEPHLVHRLDKLTSGVMVVAKNKQTARELTQLIKSRETRKYYLTLLVGNLNK-------- 182 Query: 195 LLKNILQSGERIVRVSQEGKPSETRFKVEERY----AFATLVRCSPVTGRTHQIRVHTQY 250 +SGE + V GK ++ +F +++++ +LV TGR HQIRV Sbjct: 183 ------KSGELVSTVY--GKTAQLKFNLKKKFDLFGELYSLVEIELYTGRKHQIRVQFAD 234 Query: 251 AGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKR 310 G PIA DD +GD++ +L GL R+FLHA+ + F + + AP+ E L+ Sbjct: 235 LGFPIAGDDNHGDKK-QNKLLRKNYGLKRIFLHASKISFDY--NNKHYDFYAPLSEDLQT 291 Query: 311 CLQKLRNA 318 L KL + Sbjct: 292 VLDKLEKS 299 >UniRef50_B2RIT5 Pseudouridine synthase n=80 Tax=root RepID=B2RIT5_PORG3 Length = 365 Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 109/330 (33%), Positives = 162/330 (49%), Gaps = 37/330 (11%) Query: 14 TADEAGQ---RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 T + GQ RID FL ++ +S I + G + VN + +K Y+++ GD V + Sbjct: 35 TVADPGQTLIRIDKFLVDRMNNATRSRIQQAAEAGAIFVNGRPVKSNYRIKPGDVVTLEL 94 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA- 129 +R R E + P + I+YEDD +LV+NKP+G VH G G G + A Sbjct: 95 LR--PRRELEIIPEDIPLD-----IVYEDDVLLVINKPAGLVVHPGHGNYTGTLVNALAY 147 Query: 130 -LRPEARF------LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 LR + + L LVHR+D+DTSG+L+VAK+ A L +Q K + Y ALV G Sbjct: 148 YLREDPEYDPMDPSLGLVHRIDKDTSGLLVVAKRAEAKSDLCKQFYYKTTHRSYRALVWG 207 Query: 183 QWQSHVKSVQAPL---LKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTG 239 ++ + ++ + LK+ LQ GKP+ T ++V E A+ + + C TG Sbjct: 208 RFDYPIGTITGNIGRDLKDRLQMAV-FPPDGDIGKPAVTHYQVLEELAYVSWIECRLETG 266 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLF------------LHAAAL 287 RTHQIR H ++ GH + D+RYG D+ L T R F LHA L Sbjct: 267 RTHQIRAHMKHIGHTLFADERYGG---DQILRGNNTANYRRFVQNCLAICPRQALHAKTL 323 Query: 288 KFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 F HP TG M+ ++ + L L++ R Sbjct: 324 GFRHPVTGVEMQFDSDIPADLTTLLERWRT 353 >UniRef50_C0Z877 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z877_BREBN Length = 310 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 102/312 (32%), Positives = 158/312 (50%), Gaps = 25/312 (8%) Query: 12 AITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPV 71 ++ + G ++ +R +L V M+ R+ R + +N+K+ + +++AGD + V Sbjct: 10 TVSEQDTGMNVEQIVRQKLN-VSGRMMQRLTRSKGILLNRKQPFLQRQVKAGDTI---AV 65 Query: 72 RVAEREEEA-------VSPHLQKVAALADVILYEDDHILVLNKPSGTAVH---GGSGLSF 121 RV ER+E+ P + ILYEDDH+L+ NKP+G VH + Sbjct: 66 RVIERQEQVPRQPQHDTKPEGPNTPMPSIDILYEDDHLLIANKPAGMMVHPIKQETDTLV 125 Query: 122 GVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 + + A R E + VHRLD+DTSG +LVAK + LRE G+ ++YLA+ Sbjct: 126 HALAAVLAARGEQTSVHPVHRLDKDTSGAILVAKSSYGHQLADRLLREGGIHREYLAVAS 185 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 G ++ AP+ ++ +R RV + G P+ T ++V++ TL R TGRT Sbjct: 186 GVLSEGAGTIDAPIGRDARHPTKR--RVVESGDPAITHYEVQQTSEEMTLARVWLETGRT 243 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVH + GHP+A D YG A L R LHA+ L F HP + + +E Sbjct: 244 HQIRVHFAHIGHPLAGDTMYGG---------ARGLLRRQALHASKLSFLHPLLEKEIVVE 294 Query: 302 APMDEGLKRCLQ 313 AP+ +KR +Q Sbjct: 295 APIPSDMKRLMQ 306 >UniRef50_C5VRN0 Pseudouridine synthase n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VRN0_CLOBO Length = 302 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 98/305 (32%), Positives = 157/305 (51%), Gaps = 35/305 (11%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEA 80 R++++L+ ++ I + R+G ++VN + Y L D I +++ +EE+ Sbjct: 20 RLNHYLK-EVAQCSSRFIRKAAREGRIKVNGNNARLSYMLTNND---IVELQINRKEEQD 75 Query: 81 VSPHLQKVAALADVILYEDDHILVLNKPSGTAVHG-----GSGLSFGVIEGLRALRPEAR 135 + P + I+YED+ I+V+NKP G VH LS GV+ + E Sbjct: 76 IIPEKMDLD-----IIYEDNDIIVVNKPKGIVVHPTKRHLNGTLSNGVLYYFND-KNENS 129 Query: 136 FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPL 195 + LV+RLD DTSG++L+AK + +L +++ K YLA+V G + + P Sbjct: 130 IVRLVNRLDMDTSGLVLIAKNAYSHMALSRDMQKDDFVKKYLAIVHGNFNEDSGVIDKP- 188 Query: 196 LKNILQSGERIVR--VSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGH 253 I + GE ++ + + G+ S T FKV E+Y A+LV + TGRTHQIRVH GH Sbjct: 189 ---IYRVGEGTLKRIIDERGQRSITLFKVIEQYKNASLVELTLETGRTHQIRVHLSSIGH 245 Query: 254 PIAFDDRYGDRE---FDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKR 310 PI D YG+ E DRQ LHA L+ HP G+++++E+ + E +K Sbjct: 246 PIYGDSLYGEEEPQYIDRQA-----------LHAYKLQIPHPKDGKILKLESSLPEDMKN 294 Query: 311 CLQKL 315 ++KL Sbjct: 295 LIRKL 299 >UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae RepID=C7NAV5_LEPBD Length = 326 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 101/318 (31%), Positives = 163/318 (51%), Gaps = 39/318 (12%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR--I 68 + + +EAG RID FL +L+ + ++ I ++++ + VN+K+ KP YK+E D ++ I Sbjct: 26 IVVLKEEAGSRIDKFLSERLE-LTRTRIQQLIKDENILVNEKKTKPAYKIEENDTIKVVI 84 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV----- 123 P + E + E + I+YED+ + V+NK +G VH +G G Sbjct: 85 PELETVEIKPENIDIE----------IIYEDNDLAVINKKAGIVVHPANGHYSGTLVNAI 134 Query: 124 ---IEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 I+ L + E R +VHRLD+DTSG+L++AK A L + +K ++K YLA++ Sbjct: 135 LYHIKDLSGINGEIR-PGIVHRLDKDTSGLLIIAKNDKAHLKLSQMFHDKTVKKIYLAIL 193 Query: 181 RGQWQSHVKSVQAPLLKNILQSGER----IVRVSQEGKPSETRFKVEERYAFATLVRCSP 236 +G+ + + ++ +R ++ GK + T ++V + TLV+ Sbjct: 194 KGKLNQKSGRIVTQIGRD---KNDRKKMTVINDLNSGKTAITNYEVISQTEKFTLVKVHI 250 Query: 237 VTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGE 296 TGRTHQIRVH ++ G+PI D YG R TE R LHA L+F HP T E Sbjct: 251 ETGRTHQIRVHMKHLGYPILGDSVYG-----RTDTEK-----RQMLHAYKLEFQHPITEE 300 Query: 297 VMRIEAPMDEGLKRCLQK 314 + A + E K+ L+K Sbjct: 301 NLEFIAKLPEDFKKALKK 318 >UniRef50_Q0BUM2 Pseudouridine synthase n=12 Tax=Acetobacteraceae RepID=Q0BUM2_GRABC Length = 366 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 109/331 (32%), Positives = 166/331 (50%), Gaps = 22/331 (6%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 T SV +T DEA R+D + R + + I ++ R G++RV+ R + +L+ Sbjct: 28 NTTIMSVTTRQVTDDEADIRLDRWFRRHYPSLTQVAIQKMCRTGQIRVDGARAEAATRLQ 87 Query: 62 AGDEVRIPPVRV---AEREEE---AVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHG 115 G VRIPP++V AE+E E A+ P QK L ILY+DDH++VLNKPSG G Sbjct: 88 PGQSVRIPPLKVPSAAEQEGEGPRALDPIQQK--ELESWILYKDDHLIVLNKPSGLPSQG 145 Query: 116 GSGLS---FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGM 172 G G++ G+++GLR R + LVHRLDRDTSGV+++A+ L R + Sbjct: 146 GPGITRHLDGLLDGLRFGRDDR--PRLVHRLDRDTSGVIVIARSPGVAAKLAALFRTRET 203 Query: 173 QKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIV--RVSQEGKPSETRFKVEERYAFA- 229 +K Y A+V G+ + PLL+ ++ ++ R ++ + T ++ + A Sbjct: 204 EKVYWAVVAGRPVPVEGRIDRPLLRQNDRNEPVVLADRKDRDKVTAITDYRTLDHAARKL 263 Query: 230 TLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGL-----NRLFLHA 284 + P+TGR HQ+RVH PI D+RYG + T L RL LHA Sbjct: 264 AWLELRPLTGRMHQLRVHCAAMDAPILGDERYGSWRNTDERGVRNTALVEGLSRRLHLHA 323 Query: 285 AALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 L HP G ++ +EA + + + L Sbjct: 324 RRLSLPHPAGG-MLSVEADLSPHMAETFETL 353 >UniRef50_C9RQF0 Pseudouridine synthase, RluA family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQF0_FIBSS Length = 424 Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 99/322 (30%), Positives = 161/322 (50%), Gaps = 40/322 (12%) Query: 19 GQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREE 78 G+RID FL ++ V ++ + +++ GEV+V ++ +++E G V + ++ E+E Sbjct: 11 GERIDKFLVGVMENVSRTDVQKLIEAGEVKVGGGKVSKNFRVETGMAVVVE--KMIEKES 68 Query: 79 EAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI---------EGLRA 129 + P + I+YEDD I+V+NKP VH G+G+S G + E L Sbjct: 69 STLEPE-----DIPLNIVYEDDDIVVINKPRNLVVHPGNGVSKGTLAAALLYHFKENLST 123 Query: 130 ----LRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 LRP +VHRLD+DT G+++VAK +A R L QL + + + Y ALV G + Sbjct: 124 VNGPLRPG-----IVHRLDKDTPGLMVVAKNDAAHRHLAHQLETRTLHRTYNALVWGCPR 178 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245 ++ AP+ +N + V + GK S T + ++ +A ATL+ +GRTHQIR Sbjct: 179 DLEGTIDAPIGRN--PKNRLKMAVVKGGKESRTHYVAKQFFAIATLLELQLESGRTHQIR 236 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRL-----------FLHAAALKFTHPGT 294 VH++Y GHP+ D Y R D L + + L A ++ HP T Sbjct: 237 VHSRYTGHPVVGDPLYDGR--DESLNRVPPLMKPVAEKVLEIAPAQLLQAVKIELIHPRT 294 Query: 295 GEVMRIEAPMDEGLKRCLQKLR 316 + + + PM+E L+ L+ Sbjct: 295 NKKLTFKVPMEEPFANVLKLLK 316 >UniRef50_C8QZ10 Pseudouridine synthase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZ10_9DELT Length = 324 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 118/334 (35%), Positives = 171/334 (51%), Gaps = 38/334 (11%) Query: 3 TETPSVKIVAITADEAGQRIDNFLRTQLKG---VPKSMIYRILRKGEVRVNKKRI----- 54 ET S V + EAG+R+D L T+ G + +S + ++R+G VRV + Sbjct: 4 AETSSFAFV-VAPHEAGRRLDLVLATRAAGSAELTRSRLQSLIRQGRVRVESAGVEAGPL 62 Query: 55 KPEYKLEAGDEV--RIPPVRVAE--REEEAVSPHLQKVAALADVILYEDDHILVLNKPSG 110 KP L+AGD V ++PP E EE +P LYED+ ILVL KP G Sbjct: 63 KPGMLLKAGDRVDLQVPPPEATELVAEEVEFTP------------LYEDEDILVLVKPPG 110 Query: 111 TAVHGGSG-----LSFGVIEGLRALRPEARFLE--LVHRLDRDTSGVLLVAKKRSALRSL 163 VH G L G++ R L + L +VHRLD+DTSG L+VAK A +L Sbjct: 111 LVVHPADGHRQGTLVHGLLHHCRNLSGISGQLRPGIVHRLDKDTSGCLVVAKNDLAHHNL 170 Query: 164 HEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVE 223 +Q + + ++K Y AL+RG V P+ ++ + + VR + G+ + T ++V Sbjct: 171 VQQFKGREVEKTYQALLRGILAEDTGQVVLPIGRHPVHRKKMAVR-REGGREAVTHWRVR 229 Query: 224 ERY-AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFL 282 +R+ A TLV TGRTHQIRVH GHP+A D YG R ++ + G++R +L Sbjct: 230 QRFSAGYTLVELLLETGRTHQIRVHMAALGHPLAGDRLYG-RNPEKDMP---YGIDRQWL 285 Query: 283 HAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLR 316 HA L F HP +G + AP+ L+ L +LR Sbjct: 286 HAWRLAFNHPRSGRRLTFTAPLWVDLQASLDRLR 319 >UniRef50_A5WFS2 Pseudouridine synthase n=3 Tax=Psychrobacter RepID=A5WFS2_PSYWF Length = 420 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 106/319 (33%), Positives = 165/319 (51%), Gaps = 24/319 (7%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVR 72 +T ++AGQRID ++ + L+ G + VN K +Y+++ GD VR+ Sbjct: 109 VTQEQAGQRIDKLAADMFTEHSRAQLQDWLKSGNLTVNDHNEKAKYRVKIGDIVRLE--- 165 Query: 73 VAEREEEAVS-PHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGLRAL 130 A+ E+ P K+ I+YEDD ++V+NKP G VH G+G S ++ GL Sbjct: 166 -AKLEQHGSDQPEDIKLD-----IIYEDDSVIVINKPVGMVVHPGAGNWSGTLVNGLLYH 219 Query: 131 RPEARFLE---LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 P L LVHR+D++TSG+L++ K ++A L EQL++K + + Y +V G S Sbjct: 220 YPNQAHLPRAGLVHRIDKNTSGLLVIGKTKAAQLELQEQLKDKSVYRHYQCVVAGDAPSL 279 Query: 188 V--KSVQAPLLKNILQSGERIVRVSQEGKPSETR-FKVEERYAFATLVRCSPVTGRTHQI 244 +++ AP+ ++ Q + + V+ GK + T K+ +L+ TGRTHQI Sbjct: 280 ARQRTIDAPIGRHRTQRTK--MTVTSTGKTAITHIMKITPLSDTYSLLDVRLETGRTHQI 337 Query: 245 RVHTQYAGHPIAFDDRYGDREFDRQ-LT----EAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RVH + GHPI DD YG+R+ R LT +A R LHA L F HP TGE + Sbjct: 338 RVHLSHIGHPIIGDDIYGNRQQLRAGLTPEQRQAIQSFPRQALHAYKLGFIHPETGESIE 397 Query: 300 IEAPMDEGLKRCLQKLRNA 318 + AP+ + + L + Sbjct: 398 LTAPLPQDIVELAHTLSDG 416 >UniRef50_Q7UHX8 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UHX8_RHOBA Length = 334 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 108/320 (33%), Positives = 157/320 (49%), Gaps = 39/320 (12%) Query: 19 GQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR--IPPVRVAER 76 G RID FL G +S I ++ V+ + I+P YK++AG +VR +PP + Sbjct: 13 GFRIDLFLTQSCDGYSRSQIRDAVQNDGAEVDGRIIRPSYKVKAGQKVRFRVPPPASDDT 72 Query: 77 EEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARF 136 E + ILYEDD ++V+NKP+G VH G G + A R ++ Sbjct: 73 VPENIPLD----------ILYEDDGLVVINKPAGMVVHPARGNWTGTLTSALAFRFQSLS 122 Query: 137 -------LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVK 189 +VHRLDRDTSGV++VAK + +L Q ++ +QK+Y A+ G+ Sbjct: 123 DVGGPTRPGIVHRLDRDTSGVIVVAKNNAVHLNLAAQWHDRLVQKEYTAITFGRLDRDRD 182 Query: 190 SVQAPLLKNILQSGERIVRVSQ-EGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHT 248 + A + ++ Q ++ +R K + T ++V ER+ T V P TGRTHQIRVH Sbjct: 183 WIHASIGRHPYQRDKQAIREGHATSKTASTFYEVVERHGRVTRVDVRPKTGRTHQIRVHL 242 Query: 249 QYAGHPIAFDDRYG-----DREFDRQL--TEAGTG------------LNRLFLHAAALKF 289 + G PI D YG R R+L TE T L+R LHA AL F Sbjct: 243 AHIGCPILCDRLYGGHSELSRSQIRRLAGTEVATPGVKPTPEGEEILLSRQALHAKALTF 302 Query: 290 THPGTGEVMRIEAPMDEGLK 309 T+P TG+ M + AP+ L+ Sbjct: 303 TNPQTGKEMTLTAPLPPDLQ 322 >UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PCC3_9BACT Length = 387 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 104/329 (31%), Positives = 164/329 (49%), Gaps = 34/329 (10%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 V + A++ RID +L ++ ++ I + G + VN K +K YK+ D V + Sbjct: 56 VQVDANQDPVRIDKYLADKMAYQSRNRIQQAADAGFIHVNGKPVKSNYKVRPNDLVTLML 115 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA- 129 R R E ++ P +A ++YEDD ++V+NK +G VH G+G G + A Sbjct: 116 DR--PRHETSIKPE-----EIAINVVYEDDQLMVVNKEAGMVVHPGAGNFHGTLIQAVAW 168 Query: 130 -LRPEARF------LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 LR F + LVHR+D+DTSG+L+VAK +A +L +Q K + Y ALV G Sbjct: 169 HLRDMPEFDANDPEVGLVHRIDKDTSGLLVVAKTPTAKNALGKQFFNKTTHRSYNALVWG 228 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRV------SQEGKPSETRFKVEERYAFATLVRCSP 236 ++ + + NI + + +R+ S GK + T +KV ER+ + TLV+C Sbjct: 229 ----NIVEDEGRIEGNIGRDPKNRLRMKVFDPDSGIGKTAVTHYKVLERFGYTTLVQCVL 284 Query: 237 VTGRTHQIRVHTQYAGHPIAFDDRYGDREFDR--QLTEAGTGLNRLF-------LHAAAL 287 TGRTHQIR H ++ GHP+ D+ YG E R + + + F LHA L Sbjct: 285 ETGRTHQIRAHMKHIGHPLFMDETYGGTEILRGQRSSSYKAFIQNCFKLCPRQALHAKTL 344 Query: 288 KFTHPGTGEVMRIEAPMDEGLKRCLQKLR 316 F HP T + M ++ ++ ++K R Sbjct: 345 GFVHPTTKQQMDFDSEWPNDFRQLIEKWR 373 >UniRef50_A9NGF1 Pseudouridine synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NGF1_ACHLI Length = 297 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 104/305 (34%), Positives = 155/305 (50%), Gaps = 40/305 (13%) Query: 15 ADEAGQRIDNFL--RTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVR 72 ++ R+D+FL T+L +S I +++ G V VN K YKL+ DE+ + Sbjct: 6 TEQTDSRLDHFLVASTELN---RSQITTLIKDGLVMVNGLTTKAGYKLKNSDEITL---N 59 Query: 73 VAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS-FGVIEGL---- 127 + +EE +P K L I+YEDD I+V+NKP G VH S ++ GL Sbjct: 60 LEAKEE--TNPLKPKNIDLN--IVYEDDDIMVINKPKGLVVHPSETFSETTLVSGLLHHT 115 Query: 128 --------RALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 LRP ++HR+D+DTSG++LVAK A + L + L+ ++++Y+AL Sbjct: 116 DTLSTHNDDPLRPG-----ILHRIDKDTSGLILVAKTNEAHKILAQDLKSHDIKREYIAL 170 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTG 239 V G + + AP+ ++ + V GKP+ T F+V + TL+ C TG Sbjct: 171 VEGVLDHNKGVIDAPIARH--PKIRTKMAVVATGKPAITHFEVMRTFRDHTLLHCKLETG 228 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RTHQIRVH Y HP+ D YG T+A + LHA L+F HP T +VM Sbjct: 229 RTHQIRVHLAYIKHPVTGDPLYG--------TKAKILKDGQLLHAFRLEFVHPITKKVMM 280 Query: 300 IEAPM 304 +EAP+ Sbjct: 281 LEAPL 285 >UniRef50_C0GQU7 Pseudouridine synthase n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GQU7_9DELT Length = 318 Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 97/284 (34%), Positives = 152/284 (53%), Gaps = 28/284 (9%) Query: 13 ITADEAGQRIDNFLRTQL-KGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPV 71 +++ E+GQ++ ++L+ +L + P S + R++R G+VRVN KR KP ++ AGD VRIPP Sbjct: 14 VSSTESGQKLFSYLKRRLGREFPGSGLMRLIRTGQVRVNSKRKKPYDRVYAGDTVRIPPH 73 Query: 72 RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGG-SGLSFGVIEGLRAL 130 ++ + LQ I++E+ VL+KP+G VH G S ++ LR Sbjct: 74 FPETGDDPQRAGELQ--------IVFENPDFTVLDKPAGVPVHSGTSARRDNMVLRLRKH 125 Query: 131 RPEARFLE-LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVK 189 A F LVHRLD++TSG+LL AK + LR + + ++K YLA V G W S Sbjct: 126 YAGADFSPALVHRLDKETSGLLLAAKNYAWLRRIQAMWNKNLVEKTYLAWVHGSWPSRWV 185 Query: 190 SVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQ 249 +++ L+K + ++ S EG+P+ +R + TLV+ +TGRTHQIR Sbjct: 186 NLEHRLIKTFEK-----MQPSPEGRPALSRVRSIASSRDKTLVQIRIITGRTHQIRTQLS 240 Query: 250 YAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPG 293 +GHP+ D +YG +G ++LHA L + PG Sbjct: 241 LSGHPVIGDGKYG----------KDSGYAEMYLHAYMLAW--PG 272 >UniRef50_C8WW59 Pseudouridine synthase n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WW59_ALIAD Length = 314 Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 110/326 (33%), Positives = 166/326 (50%), Gaps = 44/326 (13%) Query: 13 ITADEAGQRIDNFLRTQLKG----VPKSMIYRILRKGEVR-VNKKRIKPEYKLEAGD--E 65 ++A++AG+R+D +L +L+ V ++ + R L G +R R+K +EAGD E Sbjct: 11 VSAEDAGERLDRWLTDRLQEDDIEVSRTQVQRWLDDGFIRRARPGRLKASDPVEAGDLYE 70 Query: 66 VRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VI 124 V +P EEE + L + V+ YEDD ++V++KP G VH G+G G ++ Sbjct: 71 VDVP-------EEEPLE--LVPDDGVPFVVAYEDDDVIVVDKPRGVVVHPGAGHMRGTLV 121 Query: 125 EGL-----------RALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQ 173 GL ALRP +VHR+D+DTSG+++ AK A R+L E R ++ Sbjct: 122 NGLLARGTPLCTLAGALRPG-----VVHRIDKDTSGLVVFAKSDRAYRALVEAFRAHDVE 176 Query: 174 KDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVR 233 ++Y+A+ G+ ++ P+ ++ VR Q GK + T F+V E +A + +R Sbjct: 177 REYVAIAHGRMPHREGTIDMPIARDPADRQRMAVR--QGGKRAVTHFEVLESFAKYSYLR 234 Query: 234 CSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPG 293 TGRTHQIRVH GHPIA D YG R ++ LHA L FTHP Sbjct: 235 LRLETGRTHQIRVHLAAIGHPIAGDPVYGPRHT--------LPIDGQALHARTLGFTHP- 285 Query: 294 TGEVMRIEAPMDEGLKRCLQKLRNAR 319 G +R E+ + + R L LR R Sbjct: 286 DGRRLRFESAVPSDMARLLDGLRQGR 311 >UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B8FT16_DESHD Length = 334 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 107/309 (34%), Positives = 154/309 (49%), Gaps = 32/309 (10%) Query: 19 GQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDE--VRIPPVRVAER 76 G R+D + T+ G +S I ++ +G V VN K YK+ A D+ V IPP R + Sbjct: 42 GTRLDVGV-TERVGKSRSFIQGLIEEGHVLVNGAARKANYKVRAMDQIAVVIPPPRELKV 100 Query: 77 EEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARF 136 E E + ILYED+ +LV+NK G VH G + + AL R Sbjct: 101 EAENIPLE----------ILYEDEDVLVVNKSQGMVVHPAPGAWTKTL--VNALLYHCRN 148 Query: 137 LE---------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 L +VHR+D+DTSG+L+VAK A + L EQ++ M + YLA+V G Sbjct: 149 LSGINGVLRPGIVHRIDKDTSGLLVVAKNDLAHQGLAEQIKAHSMARRYLAIVHGVVFEP 208 Query: 188 VKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVH 247 +V+AP+ ++ +++ V Q K + T ++V ER+ TL+ TGRTHQIRVH Sbjct: 209 SGTVEAPIGRDPADR-KKMAVVFQNAKEAVTHYEVLERFRDFTLLEARLETGRTHQIRVH 267 Query: 248 TQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEG 307 Y HP+ D YG R + GL LHA L F HP +GE M AP Sbjct: 268 MAYLKHPVLGDPLYGPR-------KNPFGLQGQMLHAQLLGFQHPRSGEYMEFSAPASGM 320 Query: 308 LKRCLQKLR 316 ++ L+++R Sbjct: 321 FQKVLEEIR 329 >UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B0TGQ0_HELMI Length = 369 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 110/331 (33%), Positives = 173/331 (52%), Gaps = 38/331 (11%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVP-KSMIYRILRKGEVRVNKKRIKPEYK 59 +++ P + + +T EA R+D +L Q VP +S +++G V ++ +K Y+ Sbjct: 28 VESRRPELVRLTVTPAEADSRVDVWL-VQKGLVPSRSHGQNWIKEGLVTLDGGPLKANYR 86 Query: 60 LEAGDEVRIPPVRVAEREEEAVSPHLQKVAALA-DV---ILYEDDHILVLNKPSGTAVHG 115 L GD + + P P + V L D+ I+++D I V+NKP+G VH Sbjct: 87 LRPGDVIEVAP------------PAPEAVEILPEDIPLEIIFQDADIAVINKPAGLVVHP 134 Query: 116 GSGLSFGV--------IEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQL 167 G G I+ L + E R +VHR+D+DTSG+L+VAK A L EQ+ Sbjct: 135 AEGHWSGTLVNALLYHIKDLSGINGELR-PGIVHRIDKDTSGLLVVAKNDRAHIHLTEQV 193 Query: 168 REKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA 227 ++ ++++YLA+V G + V+AP+ ++ + +R+ ++ GK + T F+V RY Sbjct: 194 KDHRVRREYLAVVHGVIGAETGRVEAPIGRDP-KDRQRMAVIAG-GKSAITHFRVLARYP 251 Query: 228 FA--TLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAA 285 +L+ C TGRTHQIRVH + GHP+A D +YG R +A GL LHA Sbjct: 252 EQGFSLLHCRLETGRTHQIRVHLAHIGHPVAGDPKYGPR-------KAAFGLTGQALHAW 304 Query: 286 ALKFTHPGTGEVMRIEAPMDEGLKRCLQKLR 316 L+F HP +GE MR +A E + LQ L+ Sbjct: 305 KLEFVHPRSGEPMRFQADPPEPFVQVLQALQ 335 >UniRef50_D0LU78 Pseudouridine synthase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LU78_HALO1 Length = 369 Score = 140 bits (353), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 105/328 (32%), Positives = 156/328 (47%), Gaps = 32/328 (9%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 V+ + D AG R+D++L+ Q+ + ++ + ++R V +++KP + +GD Sbjct: 34 VRRFVVDEDSAGFRLDHYLKRQIPRLSRTKLQDVIRHQLEPVRGRQLKPSASVHSGD--- 90 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 V V R P + + +LY D H+LV++KP+G VH + F + + Sbjct: 91 ---VIVMSRRARPEPPCPRTIG-----VLYSDPHMLVIDKPAGLPVHASARFYFNTLTRV 142 Query: 128 RALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ---- 183 R + +++ HRLDR+TSG L+VA+ + L +K K YLALV G Sbjct: 143 LGERFPGQPMQICHRLDRETSGALVVARGKPEAARLKGAFADKRAHKTYLALVWGDPPWP 202 Query: 184 ---WQSHVKS---VQAPLLKNILQSGERIVR--VSQEGKPSETRFKVEERYAFATLVRCS 235 W S + + PL +S +R V PS TR +V ER A LVRC Sbjct: 203 DGAWDSAPEDDAIIDLPLGLVADESARIKIRMEVRAGALPSLTRVRVLERRGRAALVRCL 262 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRY--GDREF----DRQLTE---AGTGLNRLFLHAAA 286 P+TGR HQIR H GHPI D Y GD F DR +T L R LHAAA Sbjct: 263 PLTGRQHQIRAHLAACGHPIVGDKLYAHGDDVFAAYCDRGMTPELLERVRLPRQALHAAA 322 Query: 287 LKFTHPGTGEVMRIEAPMDEGLKRCLQK 314 + HP G +R E+P+ ++ L + Sbjct: 323 IALPHPFEGRQVRAESPLPADMRAFLDR 350 >UniRef50_A0L9J0 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9J0_MAGSM Length = 332 Score = 140 bits (352), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 105/331 (31%), Positives = 161/331 (48%), Gaps = 45/331 (13%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRIPPV 71 + AD+AGQR+D L + +S + R +++ V V+ + K P K+ G + I P Sbjct: 14 LHADDAGQRLDKALCCHFPDLTRSTLQRWIKEERVIVDHEVAKLPSQKVRVGQHIIIYP- 72 Query: 72 RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI------- 124 +E E P +A IL+ED+H++VLNKP+G VH G+G++ G + Sbjct: 73 --SEPEPSTALP-----EEIALEILFEDEHLIVLNKPAGMVVHPGAGVNHGTLVNALLYH 125 Query: 125 --------EGLRAL----RPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGM 172 GL + RP +VHRLD++TSG+++ AK+ A L Q ++ + Sbjct: 126 CGTPDNPHGGLSGIGGVIRPG-----IVHRLDKETSGIMVAAKQDHAHIHLSRQFEQRTI 180 Query: 173 QKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLV 232 + YLAL RG Q ++ + ++ + + V V Q G+ + TR+KV E L+ Sbjct: 181 GRRYLALTRGIPQPAQGRIEGAIGRHPIHRTKMAV-VEQGGRAAATRYKVLEPLGQFALI 239 Query: 233 RCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDRE--------FDRQLTEAGTGLNRLFLHA 284 RC +GRTHQIRVH + GHP+ D YG + RQ + R LHA Sbjct: 240 RCRLESGRTHQIRVHMTHIGHPLVGDPLYGAQHKAPSHWPPLHRQRFDQ---FQRQALHA 296 Query: 285 AALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 L F HP TGE M + P ++ + L Sbjct: 297 HTLTFIHPHTGEEMSFKRPPPADFRQLYETL 327 >UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWM0_HALOH Length = 308 Score = 140 bits (352), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 103/325 (31%), Positives = 159/325 (48%), Gaps = 41/325 (12%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR- 67 K+ ++++E G+RID +L K + +S I +++ +V VN + +K +K+ GD +R Sbjct: 6 KVYEVSSEEEGKRIDKYLSKLNKDLSRSYIQKLIDNDKVLVNGESVKRSFKVNRGDHIRL 65 Query: 68 -IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGL------- 119 IPP E+ + P V D+I YED ILVLNK +G VH G Sbjct: 66 IIPPP-----EDSGIKP----VEMDLDII-YEDKDILVLNKNAGLVVHPAPGNHENTLVN 115 Query: 120 -------SFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGM 172 + I G+ RP +VHRLD+DTSGV+++AK + R L EQ +++ Sbjct: 116 ALIAYCDNLSTISGVN--RPG-----IVHRLDKDTSGVMVIAKNDISHRKLVEQFKQRKT 168 Query: 173 QKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLV 232 +K Y L++G+ + AP+ ++ +++ + K + T FKV E + + V Sbjct: 169 KKYYRTLLKGELPYKEGKIDAPIGRD-PHDRKKMAVTRKNSKKAVTYFKVLEFFRDHSYV 227 Query: 233 RCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHP 292 TGRTHQIRVH Y G P+ D YG + Q T R LHA L F HP Sbjct: 228 EVELKTGRTHQIRVHFSYMGFPVVGDSIYGKKRNRLQAT-------RQLLHAYRLGFYHP 280 Query: 293 GTGEVMRIEAPMDEGLKRCLQKLRN 317 + + +A + + K+ L L N Sbjct: 281 RNDKWVEYKASLPDDFKKALDILEN 305 >UniRef50_B8FTI5 Pseudouridine synthase n=2 Tax=Desulfitobacterium hafniense RepID=B8FTI5_DESHD Length = 302 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/226 (38%), Positives = 124/226 (54%), Gaps = 17/226 (7%) Query: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFGVIE----GLRALRPEARFLELVHRLDRDTSGV 150 ILYEDD+ + +NKP+G VH G I G + EAR +HR+DR+TSGV Sbjct: 85 ILYEDDYFIAINKPAGQVVHPTPRYPRGTIGNAVVGYWLAKGEARPFRPIHRIDRNTSGV 144 Query: 151 LLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVR-V 209 +++ K + A + + Q + K Y +V GQ +++AP+ L I R + Sbjct: 145 VVIGKNQFAHQQMAWQHAHGRIHKCYRGIVEGQVMEDQGTIKAPI---ALAPDSFIQRQI 201 Query: 210 SQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQ 269 S EG P+ T +KV ERY A+L+ TGRTHQIRVH Q+ GHP+ DD YG Sbjct: 202 SPEGSPAVTLYKVLERYQDASLLEFILETGRTHQIRVHCQHLGHPLLGDDLYGGNL---- 257 Query: 270 LTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 +NR LH++ +F HP TGE+ I+AP+ E L+R L++L Sbjct: 258 -----ARINRQALHSSIYEFNHPLTGELTTIQAPLPEDLQRLLREL 298 >UniRef50_A8IAL9 Pseudouridine synthase n=2 Tax=Xanthobacteraceae RepID=A8IAL9_AZOC5 Length = 384 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 110/339 (32%), Positives = 164/339 (48%), Gaps = 46/339 (13%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 +V++ +T DEA R+D + +T + + +++R G+VRV+ R+K +L G V Sbjct: 24 AVELKQVTEDEADMRLDRWFKTHFPDLSFGHLQKLVRTGQVRVDGGRVKTSTRLSPGQSV 83 Query: 67 RIPPV-----------RVAEREEEAVS--------------PHLQKVAALA--------- 92 R+PP+ + + E AV+ P +V A A Sbjct: 84 RVPPLGDDAAPAASPAQSKTKGEGAVAGEEGGFAGSGSPFAPAAHQVRAAARREQTDAEF 143 Query: 93 --DVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG-LRALRP-EARFLELVHRLDRDTS 148 +IL+ED +LVLNKPSG AV GGSG +F I+G L ALR + + LVHR+D+DT+ Sbjct: 144 LRSIILFEDKDVLVLNKPSGIAVQGGSG-TFRHIDGMLDALRAKDGQKPRLVHRIDKDTA 202 Query: 149 GVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVR 208 G LL+AK R + L + R + +K Y ALV G + + L + + R+ R Sbjct: 203 GCLLIAKNRLSAAQLAKNFRSREARKIYWALVPGVPKPRQGRISTYLAREEAEERMRVAR 262 Query: 209 VSQEGKPSETRFK--VEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREF 266 +E + VE + + PVTGRTHQIR H + HPI D +Y F Sbjct: 263 HGEEDASHAVTYYAVVEHAAQKMSWLSLKPVTGRTHQIRAHLAHIHHPIVGDPKY----F 318 Query: 267 DRQLTEAGTGL-NRLFLHAAALKFTHPGTGEVMRIEAPM 304 + + E GL NRL L A L HP ++ + AP+ Sbjct: 319 NIENWELPGGLQNRLHLLARRLVIPHPRGEGMIDVSAPL 357 >UniRef50_B3DV48 Pseudouridine synthase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DV48_METI4 Length = 325 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 105/311 (33%), Positives = 162/311 (52%), Gaps = 40/311 (12%) Query: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRV-NKKRIKPEYKLEAGDEVRIPPVRVAER 76 GQR+D FL + L V ++ I + + G++R+ N ++P +++ +E+ I R Sbjct: 22 VGQRLDLFL-SSLLNVSRNKIKKKILSGDLRLKNGAVLEPSHRIRGIEEIEI---RGGLT 77 Query: 77 EEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI------------ 124 EE P L K +A ILYED+ IL++NK G VH G G + Sbjct: 78 EE---IPSLPKAEEIALEILYEDEEILIVNKQRGMVVHPSCGHWSGTLVNSLLFHYGESL 134 Query: 125 EGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQW 184 G LRP +VHRLD+DTSGV+++AK +L+SL Q ++ +QK YL L + ++ Sbjct: 135 PGSSLLRPG-----IVHRLDKDTSGVMVIAKTERSLKSLLLQFSQRTVQKVYLCLCKNRF 189 Query: 185 QSHVKSVQAPLLKNILQSGERIVRVSQ-EGKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 S +A + ++ S + + V + +GK +ETRF + + A+ ++C PV+GRTHQ Sbjct: 190 PYLRYSFEANIHRH--ASDRKKMAVHRLKGKTAETRFTLLFASSQASFLKCEPVSGRTHQ 247 Query: 244 IRVHTQYAGHPIAFDDRYGD--REFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 IRVH + G PI D YG R++ L LHA ALK HP +G+ + Sbjct: 248 IRVHLSHLGFPIIGDPLYGKGVRKYPFP----------LLLHAYALKIEHPRSGKKIEFM 297 Query: 302 APMDEGLKRCL 312 AP+ + K L Sbjct: 298 APLPQDFKEAL 308 >UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiaceae RepID=B2UL66_AKKM8 Length = 323 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 107/319 (33%), Positives = 154/319 (48%), Gaps = 29/319 (9%) Query: 13 ITADEAGQ--RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 +T D+A R+D +L L + +S I +++ G+V VN KP+ + GD + Sbjct: 3 LTTDDADGKIRLDQYLAAHLPELSRSRIQSLIKSGDVLVNGSPAKPKNPVSRGDSIT--- 59 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 VR+ E E P + ILYED+ ++V+NK SG VH +G G I + AL Sbjct: 60 VRIPEPEPAEAQPQDIPLD-----ILYEDEDVVVINKESGMVVHPAAGNPDGTI--VNAL 112 Query: 131 RPEARFLE---------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 L +VHRLD+DTSG L++AK A +SL Q + +K YLA+V+ Sbjct: 113 LHHCGDLSGIGGVERPGIVHRLDKDTSGCLVIAKNDGAHQSLTAQFAARSTEKRYLAVVQ 172 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKV--EERYAFATLVRCSPVTG 239 G +V + ++ + + V GK + T + + + ++LV C+ TG Sbjct: 173 GIPSQSSGTVFTHIGRHPVNRLKMAVVNPGSGKAAITDYDLLCADPSTDSSLVLCTLHTG 232 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RTHQIRVH Y GHP+ D Y RQ + G RL LHA L F HP TG+ M Sbjct: 233 RTHQIRVHMLYLGHPLIGDPIYAKPA--RQKAKPG----RLMLHAWRLGFDHPRTGKRMD 286 Query: 300 IEAPMDEGLKRCLQKLRNA 318 EAP+ LQ N Sbjct: 287 FEAPVPPEYTPWLQLFPNG 305 >UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae RepID=D1ANU4_SEBTE Length = 305 Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 101/310 (32%), Positives = 165/310 (53%), Gaps = 36/310 (11%) Query: 17 EAGQRIDNFL--RTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGD--EVRIPPVR 72 E G+R+D ++ RT+L ++ I ++++ G + VN K+ KP YK+E D E+ IP Sbjct: 10 EEGKRLDLYIAERTEL---TRTRIQQLIKDGNINVNNKKSKPSYKVEKNDFIEMIIPD-- 64 Query: 73 VAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV--------I 124 E+E + V ++ ILYED I V++K +G VH G G I Sbjct: 65 --EKEIDLVPENINIK------ILYEDSDIAVIDKEAGIVVHPSHGHESGTLVNAVMYHI 116 Query: 125 EGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQW 184 + L + E R +VHRLD+DTSG+L++AK +A L E G++K Y+A+++G+ Sbjct: 117 KDLSGINGEIR-PGIVHRLDKDTSGLLIIAKNDTAHLRLSEMFGSSGIRKTYIAILKGKI 175 Query: 185 QSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQI 244 ++ L+ + +++ V GK + T F+V ++ +LV+ + TGRTHQI Sbjct: 176 NKESGKLET-LIGRDPKDRKKMAVVKTNGKTAITYFQVLDKNEKFSLVKVNIQTGRTHQI 234 Query: 245 RVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPM 304 RVH +Y G+P+ D YG R AG R LHA L+F HP T + M+I + + Sbjct: 235 RVHMKYLGYPVLGDSVYG-----RDNKIAG----RQMLHAYKLEFLHPVTQKAMKIISEL 285 Query: 305 DEGLKRCLQK 314 + ++ L++ Sbjct: 286 PQDFEKALKE 295 >UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_0723 n=13 Tax=Chlorobiaceae RepID=Y723_CHLP8 Length = 327 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 102/327 (31%), Positives = 166/327 (50%), Gaps = 49/327 (14%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI----PPVRVAER 76 RID +L Q++ + ++ + + +G V VN K +K Y++++ D + + PP Sbjct: 13 RIDRYLTQQVENMTRNKVQAAIEEGRVLVNGKPVKSNYRVKSCDHIHLTFLRPPAPELAP 72 Query: 77 EEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG--LRALRPEA 134 E+ ++ ILYEDD ++V++K +G VH G G + L L +A Sbjct: 73 EDIPIT------------ILYEDDDLMVIDKEAGMVVHPAFGNWTGTLANAILHHLGKDA 120 Query: 135 RFLE-------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 L+ +VHRLD+DTSG++++AK +AL L Q + ++K Y A+V G ++ Sbjct: 121 DELDKTEMRPGIVHRLDKDTSGLIIIAKNPTALHKLARQFANRQVEKVYKAIVWGVPKAE 180 Query: 188 VKSVQAPLLKNILQSGE-RIVRVS-----QEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 +++ NI +S + R V + EGK + T ++V E + +L+ + TGRT Sbjct: 181 SGTIKT----NIGRSHKNRKVMANFPYEGAEGKHAITDYQVVEDLGYFSLMDVTLHTGRT 236 Query: 242 HQIRVHTQYAGHPIAFDDRYG-----------DREFDRQLTEAGTGLNRLFLHAAALKFT 290 HQIRVH Q+ GH I D+ YG F R L E ++R LHA L+F Sbjct: 237 HQIRVHLQHLGHSILGDETYGGATPRTLPFSKSEPFTRNLLEL---MSRQALHAQTLRFR 293 Query: 291 HPGTGEVMRIEAPMDEGLKRCLQKLRN 317 P TGE + AP+ E ++ L+K+R Sbjct: 294 QPTTGEPLSFSAPLPEDMELVLEKIRT 320 >UniRef50_Q1Q689 Similar to ribosomal large subunit pseudouridine synthase D n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q689_9BACT Length = 335 Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 94/318 (29%), Positives = 158/318 (49%), Gaps = 28/318 (8%) Query: 19 GQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREE 78 +RID F+ ++ + ++ I +++++G + VN +K Y ++ GD + V EE Sbjct: 25 SKRIDRFISSRFPDLSRTYIQKLVKEGAIVVNGNVVKSSYFIKKGDVIS---ATVPVPEE 81 Query: 79 EAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLE 138 ++P + I+YEDD+++++NKP VH G G + + A+ + L Sbjct: 82 TKITPE-----DIPLNIIYEDDYLMLINKPYDMVVHPAGGHPSGTL--VNAVTFYCQNLS 134 Query: 139 ---------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVK 189 +VHRLDRDTSGV+LV K + + Q ++ ++K+Y A+V G+ Sbjct: 135 QINGPLKAGIVHRLDRDTSGVMLVIKSDAVHSHIAMQFEKRLVKKEYFAVVEGEVAFDSN 194 Query: 190 SVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQ 249 + P+ ++ + + VR GK + + ++V ER+ TLV+ P TGRTHQIRVH Q Sbjct: 195 EINMPIGRHRVDRQKMAVR-RDTGKNATSVYEVIERFRGYTLVKIMPKTGRTHQIRVHMQ 253 Query: 250 YAGHPIAFDDRYGDRE--FDRQLT------EAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 GHP+ D+ Y F L + G+ + R LHA ++F HP + M + Sbjct: 254 AIGHPVVADEMYSKYNACFRSDLLGKERAPDEGSIIERQALHAHRIEFFHPILNKQMAFQ 313 Query: 302 APMDEGLKRCLQKLRNAR 319 M E + + LR R Sbjct: 314 VDMAEDISFLVSALRELR 331 >UniRef50_D0BL50 Pseudouridine synthase n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BL50_9LACT Length = 296 Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 102/297 (34%), Positives = 153/297 (51%), Gaps = 29/297 (9%) Query: 29 QLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGD--EVRIPPVRVAEREEEAVSPHLQ 86 Q KG+ K+ + + R G++ VN + L GD + IPP E E E V P Sbjct: 20 QEKGITKTFLAHVKRNGKLLVNGREEIVLKTLVPGDVLTMVIPP----EGEHETVVP--- 72 Query: 87 KVAALADVILYEDDHILVLNKPSGTA-----VHGGSGLSFGVIEGLRALRPEARFLELVH 141 + + IL+EDD++L++NKP GTA +H ++ V L+ R + +V Sbjct: 73 --SHIPLDILFEDDYLLIVNKPQGTASIPSQLHPDQSMANRVKGYLQTTRTQDCVTHVVT 130 Query: 142 RLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ--WQSHVKSVQAPLLKNI 199 RLDRDT+GV++ AK R + + LR K +QK Y A+V Q + H + AP+ + Sbjct: 131 RLDRDTTGVMMFAKHRVVHAWMDQALRNKTIQKTYHAIVTKQDVLKEH-DLIDAPIGRTD 189 Query: 200 LQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDD 259 R VR +GKPS T + +EE Y + LV+ TGRTHQIRVH + G P+ DD Sbjct: 190 DSIINRCVR--PDGKPSLTEYWLEETYQHSQLVKIRLHTGRTHQIRVHFSWLGCPLLGDD 247 Query: 260 RYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLR 316 YG + + + +A LH + L F HP TGE M ++A + + + ++K R Sbjct: 248 LYGGEKIEPLMRQA--------LHCSQLDFVHPMTGEKMCVKALLPKDMAEWIEKDR 296 >UniRef50_P75485 Uncharacterized RNA pseudouridine synthase MG209 homolog n=2 Tax=Mycoplasma RepID=Y292_MYCPN Length = 309 Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 106/303 (34%), Positives = 160/303 (52%), Gaps = 18/303 (5%) Query: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPVRVAER 76 QR+D FL T L + + + +++ G V VN K+I K + ++ D V V +E Sbjct: 9 TAQRLDTFLATLL-NLSRVKVAKLIVDGLVSVNGKKITKNGWLVQPEDRVH---VNWSEE 64 Query: 77 EEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARF 136 E V +Q D ILYED+ I+V+NKP+G H S + G + Sbjct: 65 LFEKVPVEVQPYDFPLD-ILYEDEQIMVVNKPNGLISHPTSFNESESLLGAALFHCNHQP 123 Query: 137 LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLL 196 + LVHRLDRDTSGV+++AK +S+L L +QL+++ M++ YLALV S ++ APL Sbjct: 124 VFLVHRLDRDTSGVIMLAKNQSSLLHLQKQLQQRVMKRYYLALVHFPLDSLSGTISAPLE 183 Query: 197 KNILQSGERIVRV---SQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGH 253 + + + + + +V S + K + T+F V + A L++C +TGRTHQIRVH Q+ H Sbjct: 184 R--VGNNKVMWKVGNSSNKAKNAFTKFTVLNQNEKAALIKCELLTGRTHQIRVHLQFIKH 241 Query: 254 PIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQ 313 P+ D YG + Q TE G +LHA + F HP + M EA +D+ L Sbjct: 242 PVYNDPLYGLKS--EQATEYGQ-----YLHAQQISFIHPTLNKEMGFEAQLDKTFSDKLD 294 Query: 314 KLR 316 L Sbjct: 295 NLN 297 >UniRef50_D0BPC6 Pseudouridine synthase n=7 Tax=Fusobacterium RepID=D0BPC6_9FUSO Length = 304 Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 12/259 (4%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI--PP 70 I D R+D FLR LK + S IY++LRKG+++VN K+I +Y+L GD + I P Sbjct: 6 IDEDYESVRVDRFLRKHLKNINLSEIYKMLRKGKIKVNNKKISQDYRLVLGDIIFIFLPE 65 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 + + EE+ + + L +I++E+D++ V+NKP G VH GSG ++E R+ Sbjct: 66 IFKEKNEEKFIEISQIRKEKLKQMIVFENDNLFVINKPLGDVVHKGSGHDISLLEEFRSY 125 Query: 131 RPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKS 190 + V+R+D+ TSG+++ AK R + ++++ + K Y LV G+ + Sbjct: 126 YSNNN-INFVNRIDKLTSGLVIGAKNIKTAREVAKEIQAGNIVKKYYILVNGKIEK---- 180 Query: 191 VQAPLLKNILQSGERIVRVS---QEG-KPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 +L+N L+ E V VS +EG K S T FK + Y TL+ TGRTHQ+R Sbjct: 181 -DNFILENYLKKDEERVIVSDIEKEGYKKSITYFKKIKEYDKYTLLEAELKTGRTHQLRA 239 Query: 247 HTQYAGHPIAFDDRYGDRE 265 + G+ I D +YG E Sbjct: 240 QLNHLGNNIVGDIKYGKNE 258 >UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C0W7_9PLAN Length = 342 Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 101/328 (30%), Positives = 158/328 (48%), Gaps = 34/328 (10%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + + A G RID++L + + +++ V VN +K ++ D V Sbjct: 19 ITVEARAHGWRIDHYLCRLYPNYTRVLFQTAIKQEAVLVNGLPVKAARRMRVNDRVS--- 75 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 VR+ E + + P + I+YEDD I ++NKPS VH G G G + G AL Sbjct: 76 VRLPELPDNRLPPEDIPID-----IVYEDDWIAIINKPSDMIVHPGKGNYAGTLAG--AL 128 Query: 131 RPEARFLE---------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 + L +VHRLDR+TSG+++VAK L Q ++ +QK+Y A+V Sbjct: 129 QYHFDQLSDVAGQYRPGIVHRLDRNTSGIMVVAKDNQVHAKLSAQFEKRDVQKEYRAIVW 188 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEG--KPSETRFKVEERYAFATLVRCSPVTG 239 G+ + + + + ++ E+++ + G + + T ++V ERY T VR P TG Sbjct: 189 GRMEFDTDYIDTFMCVHP-RAREKMIVCDEGGNARNAFTYYEVIERYQAFTYVRLKPRTG 247 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDR------------EFDRQLTEAGTGLNRLFLHAAAL 287 RTHQ+RVH Q+ GH I D YG E D E+ + R LHA L Sbjct: 248 RTHQLRVHMQHIGHSIVADRVYGGHKSLKMKSLGIQAEADAAELESDVLIERQALHAYCL 307 Query: 288 KFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 +F HP +G+ M+ EAP+ E ++ L L Sbjct: 308 EFFHPQSGKPMKFEAPLPEDMQNTLAAL 335 >UniRef50_C0QV86 Pseudouridine synthase n=2 Tax=Brachyspira RepID=C0QV86_BRAHW Length = 329 Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 89/300 (29%), Positives = 158/300 (52%), Gaps = 24/300 (8%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 K IT D+ G+R+D F+ +L + +S + L + VN K Y L+ D + I Sbjct: 31 KSFIITEDDIGKRLDTFISEKL-NITRSQVKNYLT--SIIVNDAEKKLSYSLKLNDNIII 87 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGG-SGLSFGVIEGL 127 + + + + +P + + ILYED ++LV+NKP+G +VH S +S ++ L Sbjct: 88 DSDNIFKEKTDTANPIPENIDL---DILYEDKYLLVINKPAGMSVHCSPSEMSGTLVNAL 144 Query: 128 RALRPEARFLE------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 + F+ ++HRLD+DTSG++++ K + + S+ EQ + + ++K Y A+V Sbjct: 145 LYKIKDFDFVGNKERAGIIHRLDKDTSGLMIIGKNANIVSSIQEQFKNRTIKKIYHAIVV 204 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 G + + + P+ ++ + + VR ++GK + T KV +R+ TL+ + TGRT Sbjct: 205 GVLKDNYIEINLPIGRHHVYRKKMTVR--EDGKEALTHIKVLKRFNSHTLIEINLKTGRT 262 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVH+ Y G P+A GD+ + + ++ L L A ++F HP T E++ E Sbjct: 263 HQIRVHSSYKGFPVA-----GDKIYSKSFSKYSG----LMLVAKKIEFMHPITKELLDFE 313 >UniRef50_A1HR26 Pseudouridine synthase, RluA family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HR26_9FIRM Length = 301 Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 96/299 (32%), Positives = 161/299 (53%), Gaps = 31/299 (10%) Query: 24 NFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKP-EYKLEAGDEVRIPPVRVAEREEEAVS 82 +FL++ G+ + + +I R+G+V +N +K + + +GDE+ I ++ ++ Sbjct: 17 DFLKS--AGISLTQLRKIKRQGQVLINGHPVKSFQTPVSSGDEISI-----DYGDDSCLT 69 Query: 83 PHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG-----LSFGVIEGLRALRPEARFL 137 P + I+YEDD +L++NKP+G VH S L+ G++ L + F Sbjct: 70 PMKMPLH-----IVYEDDFLLIVNKPAGLLVHPTSDPTEPTLAHGILYYLHSKGALGAF- 123 Query: 138 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLK 197 +HRLDR+TSG++ +AK +L KG+++ YLA+V G S + + AP+ + Sbjct: 124 HPIHRLDRNTSGLVAIAKHPHIQHALSGG-GAKGLKRLYLAVVTGIPSSLMGRIDAPIGR 182 Query: 198 NILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAF 257 + +R+VR +G+P+ T ++V ++ A+LV +TGRTHQIRVH + GHP+ Sbjct: 183 HPNSIIKRVVR--SDGQPAITLYRVLSTFSMASLVELELLTGRTHQIRVHLSHIGHPLLG 240 Query: 258 DDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLR 316 DD YG A + R LHAA+L F HP T +V+ + +P+ L +Q LR Sbjct: 241 DDLYGG---------ATDLIRRQALHAASLSFRHPATDKVLTLTSPLPPDLADLIQLLR 290 >UniRef50_Q1D114 Pseudouridine synthase, RluA family n=6 Tax=Cystobacterineae RepID=Q1D114_MYXXD Length = 306 Score = 137 bits (344), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 105/315 (33%), Positives = 153/315 (48%), Gaps = 23/315 (7%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 V + + AG+R+D FL Q+ G+ ++ G VR+ KR +P KL G+E+ + Sbjct: 6 VQVPREAAGERLDRFLSKQVPGINLERARALIDSGAVRIRGKRCQPTRKLWGGEEIEL-- 63 Query: 71 VRVAEREEEAVSPHLQKVAALADVIL---YEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 ER E P VAA +L ++D ++++NKP G V G + V+ L Sbjct: 64 ----ERPE----PRAASVAASEGPVLPVLHDDSALVIVNKPPGIVVEP-EGRAASVVGLL 114 Query: 128 RALRPEARFLEL-----VHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 A RP L VHRLDR+TSG L A+ +A +L +EK + K Y LV G Sbjct: 115 AAQRPPFDVEGLAQPGVVHRLDRETSGCLAFARTDTAAAALLRSFQEKRVDKRYWTLVLG 174 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 Q + + ++ P ++ RV + + F+V ER+A A L+ TGRTH Sbjct: 175 QPPAQGR-LEGPYARDPADPRRFTTRVPSARR-AALSFEVRERFADAALLEVDLDTGRTH 232 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 Q+RV AG P+ D YG E + A L R LHA L+ P TG+ +R+EA Sbjct: 233 QVRVQLSEAGFPVLADSLYGPPE--ARAHAAARALGRQALHAFTLELPSPATGQPVRVEA 290 Query: 303 PMDEGLKRCLQKLRN 317 P+ E +R L LR Sbjct: 291 PLPEDFQRALTVLRG 305 >UniRef50_C9LM35 Pseudouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM35_9FIRM Length = 308 Score = 137 bits (344), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 104/320 (32%), Positives = 164/320 (51%), Gaps = 30/320 (9%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRV-NKKRIKPEYKLEAGDE 65 +V +V++ ADE G+R+D FL+ + G+ +S + + ++ G V + KK I Y + GD Sbjct: 4 NVYLVSV-ADE-GKRLDQFLKER-TGLTRSEVQKWIKAGNVSLLPKKMIHSNYHVSEGD- 59 Query: 66 VRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG------- 118 RI ++++E + ++ ILYED+ ++V+NK G VH G+G Sbjct: 60 -RISFFWEEKKKQELIGQNIPLD------ILYEDNDMIVINKRRGVVVHPGAGNTEGTLV 112 Query: 119 --LSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDY 176 L F E LR++ R +VHRLD+DTSGV++ AK A L +++ Q+ Y Sbjct: 113 NALLFHCGEQLRSVGDPER-PGIVHRLDKDTSGVMVAAKSERAYGILQKEIASHKAQRCY 171 Query: 177 LALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSP 236 +ALV GQ + ++ PL ++ + V + + G+P+ T F V E + + C Sbjct: 172 IALVHGQMEGDTGVIRLPLGRSTKDRMKWDV-LHETGRPAVTHFHVIEYLPHYSWIECKL 230 Query: 237 VTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGE 296 TGRTHQIRVH + H + D YG ++ + LH+ L+ HP TGE Sbjct: 231 ETGRTHQIRVHMAHIRHAVVNDPLYGWKKDHFPIKGQA-------LHSHTLELCHPITGE 283 Query: 297 VMRIEAPMDEGLKRCLQKLR 316 VM EAP+ E + CL R Sbjct: 284 VMHFEAPVPEDMINCLNLAR 303 >UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_0901 n=5 Tax=Chloroflexi (class) RepID=Y901_CHLAA Length = 316 Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 98/318 (30%), Positives = 165/318 (51%), Gaps = 30/318 (9%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGD--EV 66 ++V + + +RID FL + + ++ + R++ +G V + + + + G ++ Sbjct: 15 RVVVVPPTQTAERIDRFLAGAMPDLSRAQVQRLIEQGFVLYDGRSPRASQPVRPGAVIQL 74 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIE 125 IPP E E + DV+ YED I V+NKP+G VH G G ++ Sbjct: 75 TIPPPIPTELVAEPIP---------LDVV-YEDADIAVINKPAGMVVHPAPGHPRGTLVN 124 Query: 126 GLRALRPEARF-----LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 L A P+ +VHRLDRDTSG+L++A+ A+RSL +Q + + M+K Y ALV Sbjct: 125 ALLARYPDLAIGGELRPGIVHRLDRDTSGLLVIARHDQAMRSLVDQQQARRMRKIYQALV 184 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERI-VRVSQEGKPSETRFKVEERYAFATLVRCSPVTG 239 G+ ++ AP+ ++ +R+ + V +G+P+ T +++ + + +L+ TG Sbjct: 185 IGR-PPETGTIDAPIGRD---PRDRLRMAVVPDGRPARTHYRLLDTFGDYSLLEVQLETG 240 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RTHQIRVH ++ G+PI D YG R + L+R FLHAA L HP +G Sbjct: 241 RTHQIRVHLRHLGYPIVGDPVYGPR-------RSHLHLSRQFLHAAYLGLVHPRSGRWQE 293 Query: 300 IEAPMDEGLKRCLQKLRN 317 AP+ L+ L++L++ Sbjct: 294 FTAPLPADLQIVLRQLQD 311 >UniRef50_Q2NIN6 Pseudouridine synthase n=4 Tax=Candidatus Phytoplasma RepID=Q2NIN6_AYWBP Length = 306 Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 96/321 (29%), Positives = 163/321 (50%), Gaps = 40/321 (12%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVR 72 I+A EA QR+D+FL + + KS +++ +V VN K K Y L+ D + + Sbjct: 9 ISASEAFQRLDHFLSAHI-NLNKSQCQKLILAQQVLVNTKSSKKSYLLKPQDLITV---- 63 Query: 73 VAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGG---------SGL--SF 121 + + E+++ LQ L I+YED ++ V+NKP+ VH +GL F Sbjct: 64 IIPQTHESIN--LQTPQNLNLDIIYEDPYLAVINKPANLVVHPSLSFQKTTLVNGLLHQF 121 Query: 122 GVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 + + RP +VHRLD++T+G+L+VAK L +++ + K Y AL+ Sbjct: 122 NTLSHIDTQRPG-----IVHRLDKNTTGLLIVAKTNDVSDKLQIAFQQRKITKIYWALIE 176 Query: 182 GQWQSHVKSVQAPLLKNILQSGERI-VRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 G + ++ P+ +N + R+ ++V +GK + T FK +R++ +L+ C+ TGR Sbjct: 177 GFLEDK-GIIKLPIGRN---NHNRLKMQVMPDGKTAVTHFKTLQRFSHFSLMECNLETGR 232 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFD--RQLTEAGTGLNRLFLHAAALKFTHPGTGEVM 298 THQ+R H + HPI GD +D +T G FLH+ LKF HP T + + Sbjct: 233 THQLRAHFSFLKHPIV-----GDLLYDSSHHITPLGQ-----FLHSKILKFNHPITNQNL 282 Query: 299 RIEAPMDEGLKRCLQKLRNAR 319 +EAP+ ++ L+ ++ Sbjct: 283 ILEAPLPTNFEKLLKTFTDSN 303 >UniRef50_Q8XYX8 Ribosomal large subunit pseudouridine synthase D n=94 Tax=Proteobacteria RepID=RLUD_RALSO Length = 358 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 104/320 (32%), Positives = 158/320 (49%), Gaps = 24/320 (7%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 IV I G+R+D L L +S + + + G VRV ++P + GD + + Sbjct: 40 IVEIPEALHGERLDKALAKLLPDYSRSRLQQWIDAGAVRVGGAAVRPRAAVCGGDRIEVV 99 Query: 70 PVRVAEREEEAVSPHLQKVAALADV-ILYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGL 127 P R + P D+ ++YEDD +LV+NKP+G VH +G S V+ GL Sbjct: 100 PQRADDENAFVAEP--------VDLDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLNGL 151 Query: 128 RALRPEARFLE---LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQW 184 P+A L +VHRLD++TSG+++VA+ A L QL+ + +++ YLALV G+ Sbjct: 152 LHRYPQAAGLPRAGIVHRLDKETSGLMVVARTLPAQTDLVRQLQARTVKRTYLALVWGE- 210 Query: 185 QSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFK----VEERYAFATLVRCSPVTGR 240 ++ AP+ ++ + + GKP+ T FK V+ A +LV+C TGR Sbjct: 211 TPEAGTIDAPIGRDPRDRTRMAIIETASGKPARTHFKTLDVVDLGRAQVSLVQCQLETGR 270 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDR---QLTEA--GTGLNRLFLHAAALKFTHPGTG 295 THQIRVH + GHP+ D Y R F R Q +A R LHA L HP +G Sbjct: 271 THQIRVHFESEGHPLLGDPVYT-RNFRRGRPQTIKAPLPAPFARQALHAVRLGLVHPASG 329 Query: 296 EVMRIEAPMDEGLKRCLQKL 315 + + A + + L + L Sbjct: 330 QSVHWHAGVPDDLAELMDAL 349 >UniRef50_A6LDZ7 Pseudouridine synthase n=26 Tax=Bacteroidales RepID=A6LDZ7_PARD8 Length = 549 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 90/219 (41%), Positives = 121/219 (55%), Gaps = 16/219 (7%) Query: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVA 154 ILYEDD++LV+NKP G G G + V + L L PEA +VHRLD TSG+LL A Sbjct: 342 ILYEDDYLLVINKPEGMLSVPGKGDADSVYQRLSILYPEATGPIIVHRLDMATSGLLLAA 401 Query: 155 KKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQE-G 213 K + A ++L Q + + +QK Y+AL+ G+ ++ PL + L +I VS+E G Sbjct: 402 KTKEAHQNLQAQFKNRTIQKRYIALLEGEVPQDEGEIRLPLCPDPLDRPRQI--VSEEFG 459 Query: 214 KPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFD-DRYGDREFDRQLTE 272 KP+ T ++V ER + TL+ P TGRTHQ+RVH A HP+ GD + R+ Sbjct: 460 KPALTHYRVLERTSGKTLIAFYPQTGRTHQLRVH---AAHPLGLHCPILGDELYGRK--- 513 Query: 273 AGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRC 311 RL+LHA L FTHP T E RIE RC Sbjct: 514 ----AERLYLHAEYLAFTHPITSE--RIEIQKSPAFPRC 546 >UniRef50_A6CF60 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CF60_9PLAN Length = 317 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 107/332 (32%), Positives = 163/332 (49%), Gaps = 32/332 (9%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 MKT + IV D G RID FL + + RI++ G +VN P ++ Sbjct: 1 MKTAFETDLIVEDYLD--GARIDRFLSRHFRNYSTHRLQRIVQAGFAKVNGIPADPLQRV 58 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 G ++ I R+ E ++ P L +LYED ++++NKP G H + Sbjct: 59 FRGQQINI---RLPEPPDKTYDPE-----PLPLEVLYEDAWLIIVNKPPGMIAHPAGNIL 110 Query: 121 FGVI-----------EGLRAL-RPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLR 168 G + G+R+L RP +VHRLD+ TSG+L+VAK+ RSL Q + Sbjct: 111 SGTVANALQYYLDQQTGVRSLLRPG-----IVHRLDQFTSGILIVAKEHLGHRSLSIQFQ 165 Query: 169 EKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQ--EGKPSETRFKVEERY 226 + + K YLA+VR Q + + + ++ Q+G + + K + TRF+V ER Sbjct: 166 QNRVSKSYLAIVRDQPKQDLFENNDAIGEHPTQAGVCMTTHPEALRAKAAFTRFEVVERL 225 Query: 227 AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAA 286 +L+R P TGR HQIRVH G PI DD YG+ D +L + ++R LHA Sbjct: 226 PGHSLIRAFPKTGRLHQIRVHLADLGFPIIADDFYGN---DARLLDDRELISRQALHAEQ 282 Query: 287 LKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNA 318 ++F+HP T M I A + + LQ++R+A Sbjct: 283 IEFSHPVTSLRMNISAGVPADFQLALQRIRSA 314 >UniRef50_A5EX53 Pseudouridine synthase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EX53_DICNV Length = 322 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 100/306 (32%), Positives = 153/306 (50%), Gaps = 22/306 (7%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEA 80 R+D L ++ + G V +N K + + AGD++ + + E+ A Sbjct: 22 RLDQVLARNYPEFSRNRWQDAINAGTVLLNGAAAKSKSLVCAGDQITGVLTQEIQTEDSA 81 Query: 81 VSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGLRALRPEARFLE- 138 + L ILY DD I+V+NKP+G VH G ++ L P+ + L Sbjct: 82 QNLPLN--------ILYADDDIIVINKPAGLVVHPAVGNHDNTLLNALLYHFPQTKHLPR 133 Query: 139 --LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLL 196 +VHRLD+DTSG +++A A L QL+ + M + YLALV G + + ++ P+ Sbjct: 134 SGIVHRLDKDTSGAMVIAHSARAHTDLVRQLQNRSMGRIYLALVYG-YITAGDTIDLPIG 192 Query: 197 KNILQSGERI-VRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPI 255 ++ + +R+ + V +GKP+ T +++EER+ TL+R TGRTHQIRVH + HP+ Sbjct: 193 RH---AKDRLKMAVRPDGKPAITHYRIEERWQTLTLLRVQLETGRTHQIRVHLSHHRHPL 249 Query: 256 AFDDRYGDREF-DRQLTE----AGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKR 310 D YG R F LTE A R LHA L HP T E+MR AP+ + + + Sbjct: 250 VGDKLYGARPFLASSLTELQRQALAEFPRQALHAVELHLHHPATNEIMRFTAPLPDDMTQ 309 Query: 311 CLQKLR 316 LR Sbjct: 310 LFTILR 315 >UniRef50_B9JRD0 Pseudouridine synthase n=1 Tax=Agrobacterium vitis S4 RepID=B9JRD0_AGRVS Length = 342 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 108/342 (31%), Positives = 174/342 (50%), Gaps = 54/342 (15%) Query: 13 ITADEAGQRIDNFLRTQLKG-VPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPP 70 I ++A R+D +L L G + ++ + ++ +G V VN + +P+ K++ GD++ I Sbjct: 16 IAGEDAEGRLDAWLAASLGGDLSRNRVKALIEQGAVFVNGTAVTEPKRKIKPGDQLVI-- 73 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI------ 124 A E E P + + +LYED ++VL+KP+G VH G+G G + Sbjct: 74 ---AMPEPEDPEPKGEDIPL---TVLYEDKDLIVLSKPAGLVVHPGAGNWTGTLVNALIH 127 Query: 125 ---EGLRAL----RPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG----MQ 173 + L + RP +VHRLD++TSGV++VAK A R L +Q + G ++ Sbjct: 128 HCGDSLSGIGGVKRPG-----IVHRLDKETSGVMVVAKNDIAHRHLADQFADHGRSGPLE 182 Query: 174 KDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRV-----SQEGKPSETRFKVEERY-- 226 + Y ALV G+ + ++ A L + +G+R R + + + + T ++V ERY Sbjct: 183 RAYQALVWGRPRGLRGTIDAALGR----AGDRTKRTVKREDTDDAREAITHYQVMERYGE 238 Query: 227 -----AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGD--REFDRQLTEAG----T 275 A+LV C TGRTHQIRVH + GHP+ D YG + L +A T Sbjct: 239 KPDATCLASLVECRLETGRTHQIRVHMAHIGHPLIGDPEYGAAFKTKANLLPDAAKAIVT 298 Query: 276 GLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 +R LHA L F HP TG+VM AP+ + ++ ++ LR+ Sbjct: 299 NFHRQALHAYLLAFEHPTTGDVMHFAAPIPDDMETIIRALRD 340 >UniRef50_Q317H5 Pseudouridine synthase n=2 Tax=Desulfovibrio RepID=Q317H5_DESDG Length = 332 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 102/273 (37%), Positives = 140/273 (51%), Gaps = 15/273 (5%) Query: 5 TPSVKIVAITADEAGQRIDNFLRTQL-KGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAG 63 T V+ + +T EAGQ++ FL+ +L GVP+ + RI+RKGEVRVNK R KP ++ G Sbjct: 6 TGGVRHIEVTRAEAGQKLLQFLQRRLGSGVPQQFLMRIIRKGEVRVNKGRAKPYDRVSEG 65 Query: 64 DEVRIPPVR-VAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG 122 D VRIPPVR AE +A A+ I+ D +LV+NKP+G V G+G + Sbjct: 66 DVVRIPPVRPAAEPSCDAACAVPAVSASPLPQIIASGDGLLVINKPAGLPVQPGTGHTDC 125 Query: 123 VIEGLRALRPEARFLEL-VHRLDRDTSGVLLVAKKRSALRSLHEQLRE-KGMQKDYLALV 180 V L A A F+ HRLD++TSG+LL +ALR+L + R + KDY A V Sbjct: 126 VTARLAAHFAGADFMPAPAHRLDKNTSGLLLAGTTYTALRTLQDLFRNGHSLIKDYCAWV 185 Query: 181 RGQW-QSHVKSVQAPLLKNILQSGERI-VRVSQEGKPSETRFKVEE---------RYAFA 229 G W + ++ L+K E+I + +P K E R A Sbjct: 186 CGIWPEQEALTLTDVLVKEGTPGKEKIHALPAGSAQPHTAPPKGREALCQVVPLLRLDNA 245 Query: 230 TLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYG 262 TL+ TGRTHQIRV HP+ D +YG Sbjct: 246 TLLGIRLATGRTHQIRVQLASRNHPVIGDVKYG 278 >UniRef50_D2RBY1 Pseudouridine synthase, RluA family n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RBY1_GARVA Length = 321 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 98/316 (31%), Positives = 165/316 (52%), Gaps = 27/316 (8%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVR 72 +T+ +G R D L ++L GV ++ ++ + + ++ ++ + L+ GD + + Sbjct: 17 VTSQFSGCRFDVCL-SKLMGVSRASAISLIERNQAKILGRKSQKSSILQDGDTIVVDQKE 75 Query: 73 VAEREEEAVSPHLQKVAALADV-ILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRA- 129 AE++EE +++ ++ I+Y DD ++V++KP G A H G S + E L A Sbjct: 76 SAEQKEEQ-----NNESSVCNIPIIYNDDDVVVIDKPVGVASHAAKGWSGPTVPECLEAV 130 Query: 130 -------LRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 L E+R +V RLD TSG++LV K A + Q + ++K Y ALV+G Sbjct: 131 GIDIKTTLCDESR-KGIVSRLDVGTSGLMLVCKTDFAYEVMKNQFAKHIVKKTYHALVQG 189 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 ++ AP+ + + + ++ +GKP+ T + V ER++ ATLV + TGRTH Sbjct: 190 DLAQDKATIDAPIGRA--KVSDFRFTITSDGKPAVTHWDVLERFSQATLVSVNLETGRTH 247 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH GHP+ D YG Q GL R +LH+ L FTHP TG+ + +++ Sbjct: 248 QIRVHFSSIGHPLVGDSMYGANPVLAQ----KLGLQRQWLHSMELTFTHPRTGKSVTVKS 303 Query: 303 --PMDEGLKRCLQKLR 316 P+D L+ L+ +R Sbjct: 304 HYPLD--LQHALEAMR 317 >UniRef50_C6V544 Pseudouridine synthase n=2 Tax=Neorickettsia RepID=C6V544_NEORI Length = 305 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 87/304 (28%), Positives = 155/304 (50%), Gaps = 23/304 (7%) Query: 12 AITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP-- 69 + + +R+D +LR P+S + + LRK V++N +K + GD + + Sbjct: 3 SFVVENDCRRLDKYLRDTFGPFPQSALQKALRKKAVKLNNVVVKASAAVLKGDSLTLSAN 62 Query: 70 -------PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG 122 P + + V K +A ++LYED+++L ++KP G V G G++ Sbjct: 63 FLQILSSPREIPSDSSKVVDSKFVKF--IASLMLYEDENVLAIDKPFGFPVQSGYGITTS 120 Query: 123 VIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 + ++++ PE R +VHRLD+ T+GVL+ AK A R L + ++K YLA+V G Sbjct: 121 IDNAMKSINPEYR---VVHRLDKHTTGVLIFAKTLDAARELWRLFSNRLVKKRYLAIVIG 177 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQ--EGKPSETRFKVEERYAFATLVRCSPVTGR 240 + + +V + K +L GE +++ + G+ + T+F V +++ A+L+ P+TGR Sbjct: 178 ELKEKKGAVDCYINK-VLFKGEEVMQCNHIGNGEHAITQFHVIKKFKNASLIELFPLTGR 236 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 HQIR GHP+ D +YG RE E +L LHA ++F G+++++ Sbjct: 237 KHQIRSQMASIGHPVLNDGKYGRRE---AFLECSVN-KKLCLHACEIEFEL--FGKIIKV 290 Query: 301 EAPM 304 A + Sbjct: 291 TAEL 294 >UniRef50_A6LT86 Pseudouridine synthase, RluA family n=35 Tax=Clostridium RepID=A6LT86_CLOB8 Length = 324 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 93/296 (31%), Positives = 154/296 (52%), Gaps = 27/296 (9%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + I +EAGQR+D FLR LK VP S I++ LRK ++RVN + +Y L+ GD V I Sbjct: 3 IEIGPNEAGQRLDKFLRKLLKDVPLSAIFKALRKKDIRVNGTKQNEKYFLQEGDVVEIKY 62 Query: 71 VRVAEREEE----AVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG-------- 118 ++ + +++ V P K+A YED++++V+ K VH S Sbjct: 63 IQSNKEDKKEKFIKVDPKRIKIA-------YEDENVVVIEKWPDVLVHSDSNNSEEPTLT 115 Query: 119 ---LSFGVIEGLRALRPEARFL-ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQK 174 LS+ +G E F +RLDR+TSG+++ K L++++E +RE ++K Sbjct: 116 DYVLSYLNDKGDYIPENEITFTPAACNRLDRNTSGMVMFGKTFEGLKAINEAIREDEIRK 175 Query: 175 DYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVS-QEGKPSETRFKVEERYAFATLVR 233 Y AL +G+ ++ + +A +LKN + +I + K + E +L+ Sbjct: 176 YYYALAKGKIRAGL--YEAYILKNPETNTSKIYDTEVKNSKKISMEISIVESNGAYSLLE 233 Query: 234 CSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKF 289 +TGR+HQIR H + G+PI D++YGD++ + E+ GLN +L+A L F Sbjct: 234 IHLITGRSHQIRAHLAHLGNPIIGDNKYGDKKLN-SFFESKYGLNFQYLYAYKLNF 288 >UniRef50_Q1ILA4 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILA4_ACIBL Length = 333 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 103/340 (30%), Positives = 165/340 (48%), Gaps = 52/340 (15%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGD------ 64 + ++AD+A R+D +L + L V ++ + ++ ++ V+ K KP YKL + Sbjct: 7 IQVSADDANIRLDQYLVSHLPDVSRARVQALIDDEKILVDGKSSKPSYKLRGSEVIDVVG 66 Query: 65 EVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG------ 118 E + PP+R + + ++YEDD + V+NKP+G VH G+G Sbjct: 67 EYQPPPLRAIPED-------------IPLDVVYEDDDLAVINKPAGMMVHVGAGATEEER 113 Query: 119 ----LSFGVIEGLRALRPEARFLE--LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGM 172 L ++ RAL + +VHRLD++TSG+++VAK A R L EQ + + Sbjct: 114 NRGTLVNALLYRFRALSEVGGDMRPGIVHRLDKETSGLIVVAKNDVAHRKLAEQFSSRRV 173 Query: 173 QKDYLALVRGQWQSHVK-SVQAPLLKNILQSGERIVRVSQEGKPS-------ETRFKVEE 224 K Y+ALV G W +K ++ P+ +++ R R++ G E + K+E Sbjct: 174 HKKYVALVHG-WPKKLKGTINLPIARDM----SRRTRMTTRGSGGRDALSHYEVKEKIES 228 Query: 225 RYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTG-------L 277 Y LV TGRTHQIRVH GHP+ D YG + ++T+A G L Sbjct: 229 PYGKFALVEVKIETGRTHQIRVHMASLGHPVVGDTLYG-APGELRVTKALKGMPSKMASL 287 Query: 278 NRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 R FLHAA ++ P TG+ +R + L+ + LR+ Sbjct: 288 ERNFLHAAEIELQQPATGKALRFVTKVPAALEDFAETLRH 327 >UniRef50_A8MF48 Pseudouridine synthase n=12 Tax=Clostridiaceae RepID=A8MF48_ALKOO Length = 305 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 97/305 (31%), Positives = 154/305 (50%), Gaps = 24/305 (7%) Query: 16 DEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAE 75 D+AG+ + L+ +L ++ R+ R + VN + +K + AGDE++I Sbjct: 19 DDAGKELKKILKNKL-DFSSRLLARVKRGKTIFVNGEYLKYHETINAGDEIKIV------ 71 Query: 76 REEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEAR 135 E+E LQ V A +YED ++++NK G H I AL +++ Sbjct: 72 MEDEPNHFTLQDVPFEA---VYEDVDLILVNKEPGIVTHPTKSHPDWTIANGAALYLKSK 128 Query: 136 FLE----LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSV 191 ++ V+RLD DTSG+L++AK A L EQ++E ++K Y+A V G + + Sbjct: 129 GIDCKVRFVNRLDMDTSGLLIIAKNAYAHHVLSEQMQEDRIEKKYIAFVWGVIKEDEGRI 188 Query: 192 QAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYA 251 +AP+ + + S +R+V + G+ S T FKV ERY AT+V +TGRTHQIRVH ++ Sbjct: 189 EAPIYRTTMDSIKRVV--DERGQESITEFKVLERYKNATMVEVKLLTGRTHQIRVHMEHL 246 Query: 252 GHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRC 311 GHP+ D YG E ++R LHA L+F P + ++A + L Sbjct: 247 GHPLIGDTLYG--------KEDAELIDRQALHAEYLRFWQPRFKRAIEVKADLPADLLSL 298 Query: 312 LQKLR 316 KL+ Sbjct: 299 RDKLK 303 >UniRef50_Q87AR7 Ribosomal large subunit pseudouridine synthase D n=18 Tax=Gammaproteobacteria RepID=RLUD_XYLFT Length = 331 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 105/315 (33%), Positives = 158/315 (50%), Gaps = 34/315 (10%) Query: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAERE 77 AG+R D L +S + ++ G+V +N ++P + G+ V + Sbjct: 23 AGRRFDAVLAELFPEFSRSRLTEWIKSGDVLLNGVLVRPRDPVYGGEVVWL--------- 73 Query: 78 EEAVSPHLQKVAALADV---ILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGLRALRPE 133 V P ++ A D+ ILYED+H+ V+NKP+G VH G+G G ++ L P Sbjct: 74 --QVMPDIRTDAVPQDIPLDILYEDEHVFVINKPAGLVVHPGAGNPDGTLVNALLHRDPA 131 Query: 134 ARFLE---LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKS 190 + +VHRLD+DTSGV++VA+ A +L EQL + + + YLA+V S + Sbjct: 132 LAAVPRAGVVHRLDKDTSGVMVVARTLQAQTALVEQLSSRQVHRQYLAVVVSALVSG-GT 190 Query: 191 VQAPLLKNILQSGERI-VRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQ 249 V A + ++ +R+ + VS GK + T +++ ER+ T + C TGRTHQIRVH Sbjct: 191 VNAAIERH---PRDRLRMEVSDTGKEAVTHYRLRERFRAHTALECRLDTGRTHQIRVHMA 247 Query: 250 YAGHPIAFDDRYGDREFDRQLTEAGT--------GLNRLFLHAAALKFTHPGTGEVMRIE 301 + HPI D YG +L + GT G R LHA L+F HP +RI Sbjct: 248 HLRHPIVGDRLYGG---SLKLPKGGTDALVAMLRGFKRQALHAEVLEFLHPVRALPVRIV 304 Query: 302 APMDEGLKRCLQKLR 316 AP+ E L + L LR Sbjct: 305 APVPEDLCQLLAALR 319 >UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LPH5_SYNFM Length = 344 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 99/317 (31%), Positives = 158/317 (49%), Gaps = 21/317 (6%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVR 72 + +E +R+D FL + +S + +++R+G V VN +K Y++ +GD + Sbjct: 14 VDVEEKLRRLDVFLSARSPDCSRSQVQKLIREGRVTVNGLPVKASYEIRSGDCI------ 67 Query: 73 VAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGLRA-- 129 A EAV + + IL+EDD +LVLNK G VH G+G G ++ GL A Sbjct: 68 -AVWLPEAVGEDSLQPRPMPLEILFEDDDVLVLNKAPGVIVHPGAGHEEGTLVHGLLAHC 126 Query: 130 ----LRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 R R +VHRLDR TSG L+VAK A L Q + + K+YLALV G Sbjct: 127 SRLASRGAPRRPGIVHRLDRGTSGALMVAKSERAYLELIRQFKHHEVGKEYLALVYGTMA 186 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245 ++ + ++ + +R+ + + G+ + +++KV + +L+R TGRTHQIR Sbjct: 187 GASGEIRTGMGRHPVDR-KRMAVLEKGGREAVSQWKVAVAWGEVSLLRVVIKTGRTHQIR 245 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQ------LTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 VH + HP+ D+ YG + + L E ++R LHA L F HP +G + Sbjct: 246 VHLSHMQHPVVGDETYGGGKRKARAVKSDVLRELLMEVDRQMLHAVGLAFRHPVSGADLS 305 Query: 300 IEAPMDEGLKRCLQKLR 316 AP+ L+++R Sbjct: 306 FTAPLPPDFAGLLERIR 322 >UniRef50_A5GW76 Pseudouridine synthase n=1 Tax=Synechococcus sp. RCC307 RepID=A5GW76_SYNR3 Length = 316 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 98/307 (31%), Positives = 157/307 (51%), Gaps = 28/307 (9%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI---PPVRVAERE 77 R+D +L +Q ++ I + + G VRVN + + L GDE+++ PP + Sbjct: 23 RLDRWLVSQRPEQSRARIQKFIEAGYVRVNGTTGRAKTPLRHGDEIKLWMPPPEPL---- 78 Query: 78 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGLRALRPEARF 136 P+LQ DV L+ED+H++V+NKP+G VH G G ++ GL P+ Sbjct: 79 -----PYLQPEPMDLDV-LFEDEHLIVINKPAGLTVHPAPGNKDGTLVNGLLHHCPDLPG 132 Query: 137 LE------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKS 190 + +VHRLD+DT+G +++AK + AL L Q++++ ++YLA+V G + Sbjct: 133 ISGKLRPGIVHRLDKDTTGCIVIAKSQQALVKLQVQIQKRVASREYLAVVHGVPAGESGT 192 Query: 191 VQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQY 250 + + ++ + + V S G+ + T + ++ER +L+R TGRTHQIRVH + Sbjct: 193 IVGAIGRHPVDRKKYAVVSSDNGRYACTHWSLQERLGDYSLLRFKLDTGRTHQIRVHCAH 252 Query: 251 AGHPIAFDDRYG-DREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLK 309 HP+ D Y R+ +L LHA L HP TGE M EAP+ E L+ Sbjct: 253 RNHPVVGDPTYSRCRKLPIELPGQA-------LHAVQLGLDHPITGERMVFEAPLPEVLE 305 Query: 310 RCLQKLR 316 + L LR Sbjct: 306 KLLAVLR 312 >UniRef50_Q6AJM1 Pseudouridine synthase n=1 Tax=Desulfotalea psychrophila RepID=Q6AJM1_DESPS Length = 327 Score = 134 bits (337), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 102/325 (31%), Positives = 166/325 (51%), Gaps = 47/325 (14%) Query: 12 AITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV----- 66 +++ ++ G R+D FL L V +++I +K V V+ + K Y+L+ G+ V Sbjct: 22 SVSYNQRGTRLDQFLAFSLPDVSRALITLSNKKELVLVDDEVKKSSYRLKEGETVTCALW 81 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIE 125 + PP+ + ++ + S +YEDD +LVL+KP G VH G+G + G ++ Sbjct: 82 QAPPLSLEPQQVDFES-------------IYEDDSLLVLSKPPGIVVHPGNGNTEGTLVH 128 Query: 126 GL-----------RALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQK 174 GL A+RP +VHRLD+DTSG ++VAK +LR+L + +E+ + K Sbjct: 129 GLLYHCREIGGVGDAIRPG-----IVHRLDKDTSGAMVVAKDERSLRTLVDSFKERQVYK 183 Query: 175 DYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFA----T 230 Y ALV G + + + AP+ ++ + +++ + GK + T ++V E + + Sbjct: 184 VYHALVCGIPKKYEGRIVAPIGRHSVHR-QKMAISERTGKFAATNWQVVEVFETKDGPYS 242 Query: 231 LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFT 290 L+R TGRTHQIRVH G PIA D YG + RQ R LHA+ L+ Sbjct: 243 LLRVHIETGRTHQIRVHMSSIGCPIAGDQVYGSK---RQ----NPAFARQMLHASRLRLP 295 Query: 291 HPGTGEVMRIEAPMDEGLKRCLQKL 315 HP TG M AP+ + + L+ + Sbjct: 296 HPVTGRTMSFTAPLWQDFQEVLEDM 320 >UniRef50_A1AW00 Pseudouridine synthase n=2 Tax=sulfur-oxidizing symbionts RepID=A1AW00_RUTMC Length = 314 Score = 133 bits (335), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 96/308 (31%), Positives = 159/308 (51%), Gaps = 24/308 (7%) Query: 19 GQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREE 78 GQRID + L + I ++ G+ ++ K KP+ K+ G EV +++ E+ Sbjct: 14 GQRIDAAMAQMLPNYSRVKITYWIKSGDALIHHKTFKPKEKVLGG-EVITLSIKI-EKTN 71 Query: 79 EAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLE 138 ++ + + DV+ YED+ I+++NKP H G G + L ++ Sbjct: 72 AWLAQDI-----VIDVV-YEDEAIIIVNKPVNLVTHPGVSNWTGTLAN-ALLHYDSSLAN 124 Query: 139 L-----VHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQA 193 L VHRLD++TSG+++VA+ A + L QL+ + ++Y A+V G S +V Sbjct: 125 LDRAGIVHRLDKNTSGLMVVARSEYAQKYLTRQLQTHSISREYSAIVYGHMISG-GTVDK 183 Query: 194 PLLKNILQSGERIVR-VSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAG 252 P+ ++ +RI + V++ GK + T ++V ER+A T V+ TGRTHQIRVH + G Sbjct: 184 PIGRD---PKDRIRQTVTESGKDALTHYRVIERFAHHTHVKVMLETGRTHQIRVHLSFIG 240 Query: 253 HPIAFDDRYGD-----REFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEG 307 HP+ D YG ++ D+QL + NR LHA L HP + E+M + P+ + Sbjct: 241 HPLIADPMYGGKIRFPKKADKQLKNSLKNFNRQTLHAKKLTLIHPTSTELMSWKVPLPQD 300 Query: 308 LKRCLQKL 315 ++ LQ L Sbjct: 301 MQDLLQVL 308 >UniRef50_C7H7W3 Ribosomal large subunit pseudouridine synthase D n=2 Tax=Faecalibacterium prausnitzii RepID=C7H7W3_9FIRM Length = 314 Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 104/317 (32%), Positives = 153/317 (48%), Gaps = 31/317 (9%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV--RIPP 70 + A+ AGQRID FL + G+ +S + ++ +G V N K KL+AGD + IP Sbjct: 8 VEAEGAGQRIDRFLSGEDTGLSRSALQGLVAEGHVLCNGKAPAKSLKLKAGDIILLEIPD 67 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI------ 124 + E + + D+I YED H+LV+NKP G VH G G + Sbjct: 68 AKPIEAVPQEIP---------LDII-YEDAHLLVVNKPKGMVVHPAPGNPDGTLVNALLW 117 Query: 125 ---EGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 L + E R +VHR+D+DTSG+L+VAK + L +Q+ +++ Y +V Sbjct: 118 HCKGSLSGIGGEIR-PGIVHRVDKDTSGLLVVAKDDATHIGLSQQMAVHSVERAYNTIVY 176 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQE--GKPSETRFKVEERYAFATLVRCSPVTG 239 G + V++ L ++ + V + E K + T +KV ER T++ C TG Sbjct: 177 GGFAQDEGFVESNLGRSKTDRKKMAVYPASEPHTKYAYTGYKVLERLGEFTMLECRLKTG 236 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RTHQIRVH HP+A D YG T L+ LHA L F HP TGE +R Sbjct: 237 RTHQIRVHMASIHHPVAGDPVYGPH-------NCITSLHGQCLHAKTLGFIHPITGEHLR 289 Query: 300 IEAPMDEGLKRCLQKLR 316 ++ + + R L LR Sbjct: 290 FDSELPDYFTRFLTTLR 306 >UniRef50_UPI00016C3FBA ribosomal large subunit pseudouridine synthase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3FBA Length = 354 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 106/343 (30%), Positives = 164/343 (47%), Gaps = 41/343 (11%) Query: 5 TPSVKI-----VAITADEAGQRIDNFLRTQLKG-VPKSMIYRILRKGEVRVNKKRI-KPE 57 TPSV+ + + G R+D +++ L +S++ R + G V +N + + KP Sbjct: 22 TPSVRFREPLDLLVMVKSEGMRLDQYVQLHLGADWSRSVVQRAIESGGVLLNGRPVLKPS 81 Query: 58 YKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGS 117 YK+ D + V + E E P + ILY+D+ + ++NKP+ VH Sbjct: 82 YKVRKNDRLH---VTMPEPTHEIPVPE-----DIPLDILYQDEWLALVNKPADMVVHPAK 133 Query: 118 GLSFGVIEGLRALRPEARFLE------------LVHRLDRDTSGVLLVAKKRSALRSLHE 165 G G + + AL + F E +VHRLD+DTSGV+LVAK R L Sbjct: 134 GNWSGTL--VNAL--QWHFREHLSTGAGHLRAGIVHRLDKDTSGVILVAKDDLTHRDLAM 189 Query: 166 QLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEER 225 Q + + K+Y+A+ G+ + ++ L + + IV + K + + ++V ER Sbjct: 190 QFESRKVFKEYVAIAAGELERDSDYIEGALKMHPYDRLKMIVSTDPDAKHALSYYEVLER 249 Query: 226 YAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTG--------- 276 + TLV+ P TGRTHQIRVH + G + D YG R +L+E G Sbjct: 250 FRGFTLVKVQPRTGRTHQIRVHLLHVGCAVLADKIYGGRA-QVKLSEIAPGTPPAEDEVL 308 Query: 277 LNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNAR 319 L R LHA L+F HP TG+ + EAP+ ++R L LR R Sbjct: 309 LGRQALHAFRLRFQHPRTGQWIEAEAPLPPDMRRTLDALRQHR 351 >UniRef50_A8SLC1 Pseudouridine synthase n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLC1_9FIRM Length = 318 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 98/322 (30%), Positives = 165/322 (51%), Gaps = 25/322 (7%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + + +++GQRID FL+ L SMI + LR +++VN+K++ Y L D + I Sbjct: 4 IEVNNNDSGQRIDRFLKKYLNNASTSMIQKFLRTKKIKVNRKKVDSNYILAENDVINI-F 62 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-------- 122 + E E+ VS + + I+YED++I+V+NKP H S +G Sbjct: 63 IYEEELEKLIVSKSKKYSYSKKLDIIYEDENIIVMNKPKNLLSHASSKEDYGNNLVDFMI 122 Query: 123 ---VIEGLRALRPEARFL-ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLA 178 + +G R E F+ +++RLDR+TSG+++ AK ALR L+ +L+E ++K Y Sbjct: 123 GYLLEKGDYNPRAEKTFVPAIINRLDRNTSGLVIGAKNSKALRELN-RLKENSIEKYYKT 181 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVT 238 +V G+ + + + L K+ ++ I S+ GK S T VE+ +L++ +T Sbjct: 182 IVSGKVKKNF-VINEKLEKDEEKNKSTI---SKNGKDSITEIYVEKNNDEFSLLKIKLIT 237 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM 298 GRTHQIR H G I D +YG+ + ++ + L FLHA + F + G++ Sbjct: 238 GRTHQIRSHLSSKGFYIIGDIKYGNAKVNKFFRD-NFNLRSQFLHAETIIFKNI-VGDLS 295 Query: 299 RIE-----APMDEGLKRCLQKL 315 + APMDE K ++K+ Sbjct: 296 YLNNKEFFAPMDEIYKNIIRKI 317 >UniRef50_A3M2Y1 Pseudouridine synthase n=18 Tax=Gammaproteobacteria RepID=A3M2Y1_ACIBT Length = 350 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 100/308 (32%), Positives = 154/308 (50%), Gaps = 22/308 (7%) Query: 19 GQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREE 78 GQRID + + + +++G + VN +KP+Y+ E + + + A+ Sbjct: 49 GQRIDQVAAMVWSEFSREKLKQWMKEGHLLVNGNIVKPKYRCEGNETLTLNVELEAQTNS 108 Query: 79 EAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGLRALRPEARFL 137 + + L I+YED+ ILV+NKP G VH G+G S ++ L P++ L Sbjct: 109 QPENIPLD--------IVYEDEDILVINKPVGMVVHPGAGNTSSTLVNALLYHSPKSAEL 160 Query: 138 E---LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAP 194 LVHR+D+DTSG+L+VAK A SL +QL +K + + Y + G + ++ P Sbjct: 161 SRAGLVHRIDKDTSGLLVVAKNLEAQFSLSKQLGDKSVYRIYDLVTYGNIIAG-GTIDEP 219 Query: 195 LLKNILQSGERI-VRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGH 253 + ++ + +R+ + + G+ + T + V+ER+ T V+ TGRTHQIRVH Y GH Sbjct: 220 IKRHPV---DRVKMAILPGGRDAVTHYNVKERFRDFTRVQAQLETGRTHQIRVHFSYIGH 276 Query: 254 PIAFDDRYGDR-----EFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGL 308 + D Y +R L E G R LHAA L HP TGE M EAP E Sbjct: 277 GLVGDQVYMNRVRIPAGASELLIETLRGFKRQALHAAKLGLKHPRTGEEMLFEAPWPEDF 336 Query: 309 KRCLQKLR 316 + + LR Sbjct: 337 TQLVNVLR 344 >UniRef50_B9XS18 Pseudouridine synthase n=1 Tax=bacterium Ellin514 RepID=B9XS18_9BACT Length = 536 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 83/212 (39%), Positives = 114/212 (53%), Gaps = 18/212 (8%) Query: 94 VILYEDDHILVLNKPSGTAVHGGSGLSF-GVIEGLRALRPEARFLELVHRLDRDTSGVLL 152 +IL+ED+H+LV+NKP+G H S + G+ E L+ P L +VHRLD++TSGV++ Sbjct: 11 LILFEDEHLLVVNKPAGMNTHAPSPYAGEGIYEWLKHREPRWASLAIVHRLDKETSGVMV 70 Query: 153 VAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVR--VS 210 K A RSL EQ ++K YL L V S + ++ +++ GE+ + V Sbjct: 71 FGKTTVANRSLTEQFTNHSIRKKYLLLT----DKVVSSQTSTMVSCLVRVGEKYLSRPVH 126 Query: 211 QEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQL 270 G+ +ET F+V + TLV P+TGRTHQIRVH G PI D YG Sbjct: 127 AGGEKAETHFEVITKAEGGTLVEAEPITGRTHQIRVHAAEQGFPILGDALYG-------- 178 Query: 271 TEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 GT +R+ LHAA LK HPGT M A Sbjct: 179 ---GTKASRVCLHAAELKLKHPGTNAEMTFRA 207 >UniRef50_C1A885 Pseudouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A885_GEMAT Length = 329 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 106/328 (32%), Positives = 153/328 (46%), Gaps = 34/328 (10%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 M E+ SV + AG R+D L V ++ ++ G V VN R K YK Sbjct: 1 MTGESASVSEFTV-GYTAGGRLD-LLVADHASVSRTQAATLIANGNVLVNGAREKASYKG 58 Query: 61 EAGDEVRI----PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGG 116 E GD VR+ PP R E+ + ++YED+H+LV++K +G VH Sbjct: 59 ETGDVVRVTIPPPPGRDIVAEQIPLD------------VVYEDEHLLVVDKAAGMVVHPA 106 Query: 117 SGLSFGVIEGLRALRPEARFLE---------LVHRLDRDTSGVLLVAKKRSALRSLHEQL 167 G G + + AL L LVHRLD+DTSG+L+VAK +A R+L L Sbjct: 107 PGNWTGTL--VNALLGRGEPLAEGGGEDRAGLVHRLDKDTSGLLVVAKSDAAHRTLSSAL 164 Query: 168 REKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA 227 + + + Y A+ G +V+ P+ ++ + + Q GK S T F R+ Sbjct: 165 AARQVTRRYAAVCWGHLAEERITVEKPIARDPRDRTR--MAIVQSGKASRTDFTRLARFD 222 Query: 228 FATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAAL 287 L+R TGRTHQIRVH GHP+ DD Y A R FLHAA L Sbjct: 223 SVDLLRAHLHTGRTHQIRVHLASTGHPVVGDDTY---GGGGGRRLALLPPRRHFLHAAWL 279 Query: 288 KFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 +F HP +G+++ + +P+ L+ L L Sbjct: 280 RFRHPISGDLIDLRSPLPADLRTSLAAL 307 >UniRef50_A7NB61 Pseudouridine synthase n=18 Tax=Francisella RepID=A7NB61_FRATF Length = 332 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 90/300 (30%), Positives = 157/300 (52%), Gaps = 24/300 (8%) Query: 17 EAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAER 76 +AG+RID + Q + ++ I + L++G + VN + KP++ + +EV I + Sbjct: 20 DAGKRIDVAINEQFEQFSRAQIQKWLKEGSITVNGRATKPKHIVLGDEEVEINIELLPTN 79 Query: 77 EEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG--LRALRPEA 134 E A +L+ I++EDD I+V++KP VH G+G G + L + + Sbjct: 80 EWIAEDINLK--------IIFEDDDIIVIDKPVNMIVHPGAGNPTGTVSNALLHRYKDQD 131 Query: 135 RF--LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQ 192 + +VHRLD+DTSG+++ AK A +L +QL E+ + + YLA+V G+ ++ Sbjct: 132 KLPRAGIVHRLDKDTSGLMVAAKSSIAYHNLVQQLAERKVSRKYLAIVEGEIYQQ-GTIN 190 Query: 193 APLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAG 252 P+ ++ + + ++ GK + T + E Y TL+ C TGRTHQIRVH + Sbjct: 191 QPIGRD--PTNRTKMAINYRGKEAITYYTPIEVYDGFTLIECQLETGRTHQIRVHMKSIK 248 Query: 253 HPIAFDDRYGDREFDRQLTE----AGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGL 308 HP+ GD+ +++ T+ A T R LHA L F HP T ++++ ++ + E + Sbjct: 249 HPLV-----GDQTYNKSSTKLEKLAITIPTRQALHAYKLSFIHPTTAKMVKFKSKLPEDM 303 >UniRef50_C0QAZ3 RluD1 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAZ3_DESAH Length = 313 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 97/316 (30%), Positives = 159/316 (50%), Gaps = 26/316 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + I+ G+R+D + + + + R + KG + V+ R KP Y+++ G+ V Sbjct: 5 IEISEALMGRRLDLVVADVVHDTTRGAVVRAIEKGLILVSGNRKKPAYRVKPGEVV---- 60 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 E+ + +++ L+ED I+V+NKP+G VH G+G S G + L AL Sbjct: 61 --CGSLGSESEIESKPRAESISLDFLHEDQWIVVVNKPAGMVVHPGAGNSSGTL--LNAL 116 Query: 131 RPEARFLE-----------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 L +VHRLD+DTSG ++VAK + A L ++ R + ++K Y+AL Sbjct: 117 LHHFPSLTDTHCDPPLRGGIVHRLDKDTSGTIVVAKSKKAYEFLQKEFRFRRVEKRYIAL 176 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTG 239 G + P+ ++ + +R+ ++ +P+ET ++V + A TL+ TG Sbjct: 177 ATGIITETQGRITLPIGRHPIHR-KRMAVNTERARPAETLWRVLGQMAGHTLLDVGLKTG 235 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RTHQIRVH + GHP+A D YG R +Q A R LHA L F HP +G+ + Sbjct: 236 RTHQIRVHFRALGHPLAGDRVYGFR--GKQSARA----PRQMLHAGTLGFRHPWSGKRVE 289 Query: 300 IEAPMDEGLKRCLQKL 315 AP+ E + L++L Sbjct: 290 FTAPLPEDMVEVLERL 305 >UniRef50_D1AYL9 Pseudouridine synthase n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AYL9_STRM9 Length = 280 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 84/281 (29%), Positives = 143/281 (50%), Gaps = 19/281 (6%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVR 72 + D R+D F+R K S+I+ ++RKG V+VN K+ K Y+L DE+ P Sbjct: 7 VDKDHVNIRLDKFMRKYSKEESLSIIFSLIRKGFVKVNGKKSKENYRLLLNDEIFFPDAA 66 Query: 73 VAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL-- 130 +++ + + + ++I++ED+ + ++NKP+ +H G FG+ E +A Sbjct: 67 KIVMDKK-IEKEIIDIDLFKNMIVFEDEDVFIINKPNNMPMHKGDKHKFGLSETAKAYYN 125 Query: 131 RPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKS 190 P F +RLD +T G+++ K LR ++E++R K + K Y+A V Q ++ Sbjct: 126 NPNVNF---ANRLDLETEGLVIGCKNLQILRKVNEEIRNKKIIKRYIAKVE---QKKLQL 179 Query: 191 VQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQY 250 + ++ E VRVS++G ++T FKV E F L+ +TGR HQIRVH Sbjct: 180 DEEFFSDKKIKIFEDRVRVSKDGLEAKTYFKVIEVKDFKVLLDIELITGRKHQIRVHLSD 239 Query: 251 AGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTH 291 GHPI D +YG+ + +R++L +KF + Sbjct: 240 IGHPIIGDSKYGNYQ----------KKDRMYLKCYYIKFLN 270 >UniRef50_D0RNQ1 Pseudouridine synthase n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNQ1_9RICK Length = 288 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 89/316 (28%), Positives = 153/316 (48%), Gaps = 41/316 (12%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 +K I D G R+D FL+ Q +P+S+ + LRK + VN K++K +KLE D V Sbjct: 5 LKSFVINKDFEGSRVDRFLKKQFPNIPQSLFEKNLRKKNITVNNKKVKNLFKLEINDIVN 64 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADV------ILYEDDHILVLNKPSGTAVHGGSGLSF 121 I E + E +++ + D ++E + VLNKP G A GS + Sbjct: 65 I----FTELKIENKINKKKQIFNINDYNELKKNFVFECEDYCVLNKPYGYASQDGSKVKL 120 Query: 122 GVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 VI+ L + + +VHRLD+DTSG++L+AK R + E + + ++K YL ++ Sbjct: 121 SVIDILNSTKKNYY---IVHRLDKDTSGLMLLAKNRFYAKKFSEMFKSREVKKKYLVIIN 177 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETR--FKVEERYAFATLVRCSPVTG 239 G+ + + K + S E++ GK E++ F+V + + + +TG Sbjct: 178 GKIKKN---------KGEIHSKEKV-----NGKEIESKLYFEVISKKNNFSYLEIDLITG 223 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 R HQIR GHP+ D +YGD++ + QL L + ++F + ++ + Sbjct: 224 RKHQIRKQFSDIGHPVVGDLKYGDKKNNTQLC----------LLSYEIEFEY--NNKIKK 271 Query: 300 IEAPMDEGLKRCLQKL 315 +A + + K CL+K Sbjct: 272 YKATIPDNFKTCLEKF 287 >UniRef50_A9GIV4 Pseudouridine synthase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GIV4_SORC5 Length = 350 Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 109/327 (33%), Positives = 161/327 (49%), Gaps = 31/327 (9%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 V ++ + + AG R+D F++TQLK ++ I+ +G +R++ D VR Sbjct: 34 VTVLRVPPESAGMRLDRFVQTQLKRTSRTRAAEIVARGAYSPEARRLR------GSDRVR 87 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGL-SFGVIEG 126 + RE P ++ +L+EDD +L ++KP+G VH + VI+ Sbjct: 88 PEQCILLWRE-----PWDEQAPDTPIPVLHEDDALLAIDKPAGLPVHPTARYHKSTVIKM 142 Query: 127 LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREK-GMQKDYLALVRGQWQ 185 + A RP R L HRLDR+TSGVLL+ + A R++ Q E+ G+ K Y A+ G + Sbjct: 143 MEAARPGERLF-LAHRLDRETSGVLLLCRTPEADRTVKAQFEERTGVVKRYAAIAWGWPE 201 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGK--PSETRFKVEERYAFA------TLVRCSPV 237 V+ PL + + +RV+ G+ S T +V R A LVRC+ Sbjct: 202 RDTFRVELPLELDDASRYKVKMRVAPPGRGLASATACEVLGRRADPLTGRRYALVRCTLE 261 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDRE------FDRQLTEA---GTGLNRLFLHAAALK 288 TGR HQIRVH +G P+ D YG E D LT+ L+R LHAA L+ Sbjct: 262 TGRQHQIRVHLAASGLPLVGDKLYGPDEGMFARGADGVLTDDDRRALELDRHALHAALLE 321 Query: 289 FTHPGTGEVMRIEAPMDEGLKRCLQKL 315 THP TGE +RIEAP+ + L+ L Sbjct: 322 LTHPMTGERVRIEAPLSDDLRTFWDAL 348 >UniRef50_P54604 Uncharacterized RNA pseudouridine synthase yhcT n=5 Tax=Bacillus RepID=YHCT_BACSU Length = 302 Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 98/306 (32%), Positives = 152/306 (49%), Gaps = 26/306 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + I + GQ + + L+T LK K +I + +++VN + + ++ GD V I Sbjct: 10 ILINEKQDGQWLFSVLKTALKA-SKPVIQDWMSHQQIKVNHESVLNNMIVKKGDRVFID- 67 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA- 129 + E E +V P ++ IL+ED+H+L++NKP+G A H G + L A Sbjct: 68 --LQESEASSVIPEYGELD-----ILFEDNHMLIINKPAGIATHPNEDGQTGTLANLIAY 120 Query: 130 ---LRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 + E + VHRLD+DTSG ++ AK R A L +QL +K +++ Y A+ G+ ++ Sbjct: 121 HYQINGETCKVRHVHRLDQDTSGAIVFAKHRLAHAILDQQLEKKTLKRTYTAIAEGKLRT 180 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFA--TLVRCSPVTGRTHQI 244 ++ +P+ ++ R RVS G+ + T FKV A +LV TGRTHQI Sbjct: 181 KKGTINSPIGRDRSHPTRR--RVSPGGQTAVTHFKVMASNAKERLSLVELELETGRTHQI 238 Query: 245 RVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPM 304 RVH GHP+ D YG LNR LHA ++ HP T E++ EAP Sbjct: 239 RVHLASLGHPLTGDSLYGG---------GSKLLNRQALHANKVQAVHPITDELIVAEAPF 289 Query: 305 DEGLKR 310 +K Sbjct: 290 PADMKN 295 >UniRef50_Q1RJX7 Ribosomal large subunit pseudouridine synthase C n=14 Tax=Rickettsia RepID=RLUC_RICBR Length = 301 Score = 130 bits (327), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 91/310 (29%), Positives = 159/310 (51%), Gaps = 35/310 (11%) Query: 19 GQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI---------P 69 R+D +LR + + +I + LR+ ++ VN K+ + ++ GDE+ I Sbjct: 10 ASRLDKYLRRLYPLLTQGVIEKALRQKQIIVNSKKAEASLRVVEGDEIFIHDKFNLPIAQ 69 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 P ++ + E +K+ + ++YEDD+I+ +NKP+G A GGS ++ V L+ Sbjct: 70 PTKLVFTDAEITLA--KKITT--EYLIYEDDNIIAINKPAGLATQGGSKINLSVDSALKY 125 Query: 130 LRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQW---QS 186 L + +LVHRLD++TSG+LL+AK + LH+ +EK ++K YLA+ G+ Q Sbjct: 126 LNSQGADFKLVHRLDKETSGLLLIAKNYVSSVKLHDAFKEKLVEKTYLAVTYGKPIKDQG 185 Query: 187 HVKSVQAPLLKNILQSGERIVRVS----QEGKPSETRFKVEERYAFAT-LVRCSPVTGRT 241 VK+ NI +S I +++ GK + T +K+ + LV P+TGR Sbjct: 186 EVKT-------NIEKSKGSIPKITDINDNNGKLAITYYKLLKSLTNNLFLVEFIPITGRM 238 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQ+R+H + G PI D++YG+ D+ + + +FLHA + + G+ + +E Sbjct: 239 HQLRLHAKLLGCPIFGDNKYGN---DKLMPYS----KYMFLHANNIVLSKKVFGKEVNLE 291 Query: 302 APMDEGLKRC 311 A + R Sbjct: 292 AKLPSYFNRV 301 >UniRef50_C8PVB8 Pseudouridine synthase n=2 Tax=Moraxellaceae RepID=C8PVB8_9GAMM Length = 380 Score = 130 bits (326), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 98/325 (30%), Positives = 160/325 (49%), Gaps = 27/325 (8%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 ++ + +++ G+RID + I L GE+ VN KP+Y+L+ D + Sbjct: 66 IQNYTVNSEQIGERIDKIAALVFSDYSREQIKNWLESGELTVNGAAQKPKYRLKPNDMLV 125 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEG 126 + A++++ + L ILYED+ +LV+NKP G VH G+G G ++ Sbjct: 126 LKASLTAQQQDLPENIPLD--------ILYEDEAVLVINKPVGLVVHPGAGNGSGTLVNA 177 Query: 127 LRALRPEARFLE---LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV--- 180 L P++R L LVHR+D++TSG++++AK + L QL++K + + Y A+V Sbjct: 178 LLFHYPDSRTLPRAGLVHRIDKETSGLMVIAKDSQSQLHLINQLKDKSVYRLYQAIVLAS 237 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRF-KVEERYAFATLVRCSPVTG 239 + H +++ AP+ ++ Q + V S GKP+ T K+ +LV TG Sbjct: 238 AAELARH-RTIDAPIGRHPTQRTKMAVVSS--GKPAVTHLEKITAISDAVSLVSVRLETG 294 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGD--------REFDRQLTEAGTGLNRLFLHAAALKFTH 291 RTHQIRVH G P+ D YG + D R LHA L F H Sbjct: 295 RTHQIRVHLSNLGFPLLGDPLYGAARKNAILLKTLDDDQKHIVQQFQRQALHAYELGFIH 354 Query: 292 PGTGEVMRIEAPMDEGLKRCLQKLR 316 P TGE ++++A + E +++ L L+ Sbjct: 355 PKTGEPIKVQARLPEDMQQLLDTLK 379 >UniRef50_A5IBH6 Pseudouridine synthase n=6 Tax=Legionella RepID=A5IBH6_LEGPC Length = 321 Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 95/308 (30%), Positives = 152/308 (49%), Gaps = 20/308 (6%) Query: 19 GQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREE 78 QR+D+ L L +S+I ++ G V +N KP+ K GD + I + Sbjct: 17 NQRVDSVLARLLPEYSRSLICNWIKTGAVTLNNLPCKPKDKALGGDLITINVNHTIVNTD 76 Query: 79 EAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS-FGVIEGLRALRPEARFL 137 +L K + I+YED ++V+NKP+G VH G+G ++ L PE + L Sbjct: 77 F----NLCKPENIPIQIIYEDSEVIVVNKPAGLVVHPGAGNKEHTLVNALLHHCPELQLL 132 Query: 138 E---LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS--HVKSVQ 192 ++HRLD+DT+G+L+VAK + SL Q++ + +++ YL LV G S + + Sbjct: 133 PRAGIIHRLDKDTTGLLIVAKNLISHTSLIRQMQNREIKRHYLTLVHGYVISGGTIDTGF 192 Query: 193 APLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAG 252 KN L+ + V+ G+ + T + + + Y TL+ S +TGRTHQIRVH Y Sbjct: 193 GRHPKNRLK-----MAVTDFGRQAVTHYNINKHYKDFTLLNVSLMTGRTHQIRVHMNYIN 247 Query: 253 HPIAFDDRYGDR-EFDRQLTEAGTGLNRLF----LHAAALKFTHPGTGEVMRIEAPMDEG 307 HP+ D YG R +F EA + + F LHA ++ F HP + + A + + Sbjct: 248 HPVVGDQLYGGRMKFPPNADEAILSVLKQFKRQALHACSISFCHPVKNTEITLNALLPDD 307 Query: 308 LKRCLQKL 315 + L L Sbjct: 308 FELLLNTL 315 >UniRef50_Q2SS88 Pseudouridine synthase n=4 Tax=Mollicutes RepID=Q2SS88_MYCCT Length = 322 Score = 129 bits (325), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 87/299 (29%), Positives = 157/299 (52%), Gaps = 28/299 (9%) Query: 35 KSMIYRILRKGEVRVNKKRI-------KPEYKL--EAGDEVRIPPVRVAEREEEAVSPHL 85 +S I +++++ + VN + I KP ++ D V P + + ++ + P++ Sbjct: 30 RSYIQKLIKEECISVNNQIITSNNFLVKPNSQIIITIKDPVLDP--NITKNKDPVLDPNI 87 Query: 86 QKVAALADVILYEDDHILVLNKPSGTAVHGG-SGLSFGVIEGLRALRPEARFLE------ 138 K + I+Y+DD +LV+NK + VH + + ++ L A E + Sbjct: 88 TKNKDIDLNIIYQDDDLLVINKQNNITVHPSLNNTNNTIVNALLASDVELSSINGELRPG 147 Query: 139 LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKN 198 +VHR+D+ T+G+L+VAK + L E + + K+YLA+V G + + + AP+ ++ Sbjct: 148 IVHRIDKQTTGLLIVAKNDKTHKLLSEMFKNHQIYKEYLAIVTGVIKPNKGLIDAPIGRS 207 Query: 199 ILQSGERIVRVS-QEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAF 257 Q+ + + V+ + K + T F+V ER+ TL++C TGRTHQIRVH Y HP+ Sbjct: 208 --QTDRKKMSVTAKNSKHAITTFEVVERFLKNTLIKCQIQTGRTHQIRVHFNYINHPVLN 265 Query: 258 DDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLR 316 D YG + ++ T+ G +LHA LKFTHP T + + + +P+ + +++LR Sbjct: 266 DPIYGKKH--QEFTDFGQ-----YLHAYKLKFTHPITKKEIELISPLPKEFDDKIKELR 317 >UniRef50_Q3AVX8 Pseudouridine synthase n=40 Tax=cellular organisms RepID=Q3AVX8_SYNS9 Length = 339 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 99/305 (32%), Positives = 154/305 (50%), Gaps = 24/305 (7%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI--PPVRVAEREE 78 R+D +L +Q ++ I + + G VRVN K+ K + L GD+V++ PP Sbjct: 41 RLDRWLVSQRTEQSRARIQKFIDAGYVRVNGKQGKAKTPLREGDQVQLWMPPPEPL---- 96 Query: 79 EAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGLRALRPEARFL 137 P+L+ DV L+ED+HI+VLNK +G VH G G ++ GL P+ + Sbjct: 97 ----PYLKPQPMDLDV-LFEDEHIIVLNKSAGLTVHPAPGNKDGTLVNGLLHHCPDLPGI 151 Query: 138 E------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSV 191 +VHRLD+DTSG ++VAK + AL L Q++++ ++Y A+V G ++ Sbjct: 152 SGKLRPGIVHRLDKDTSGCIVVAKSQEALVKLQVQIQKRVASREYFAVVHGVPDGDSGTI 211 Query: 192 QAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYA 251 + ++ + + V + G+ + T + + ER+ +L+R TGRTHQIRVH + Sbjct: 212 IGAVGRHPVDRKKYAVVSDESGRYARTHWTLIERFGDYSLLRFKLDTGRTHQIRVHCAHI 271 Query: 252 GHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRC 311 HP+ D Y R L G LHA L HP TGE M EAP+ +++ Sbjct: 272 NHPVVGDPTY-SRCRKLPLDLPGQA-----LHAVQLGLDHPITGERMVFEAPLPPVMEKL 325 Query: 312 LQKLR 316 L LR Sbjct: 326 LLVLR 330 >UniRef50_Q3A0C2 Pseudouridine synthase n=13 Tax=Bacteria RepID=Q3A0C2_PELCD Length = 326 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 99/313 (31%), Positives = 152/313 (48%), Gaps = 29/313 (9%) Query: 20 QRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDE--VRIPPVRVAERE 77 +R+D FL QL + +S + +++ G V ++ KP KL+ G+ V +P AE Sbjct: 16 ERLDRFLVEQLPELSRSQLKKLIDDGRVLLDGAAAKPGSKLKGGETLTVDVPDPSPAEAV 75 Query: 78 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI--------EGLRA 129 E + VILYED H++V++KP G VH G G + + L Sbjct: 76 SEDI----------PLVILYEDRHLIVIDKPPGMVVHPAPGHYQGTLVNALLHHCQDLSG 125 Query: 130 LRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVK 189 + E R +VHRLD+DTSGV++ K SA +SL Q + + + Y+AL+ G Sbjct: 126 IGGELR-PGIVHRLDKDTSGVMVATKTDSAHQSLAAQFKAHSITRRYIALIHGVLTGDRG 184 Query: 190 SVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF--ATLVRCSPVTGRTHQIRVH 247 S+ P+ ++ +++ + G+ + T ++V R+ TLV + TGRTHQIRVH Sbjct: 185 SIDRPIGRHPTHR-KKMSTTCRTGRHAVTHWRVLRRFDDDRLTLVELALETGRTHQIRVH 243 Query: 248 TQYAGHPIAFDDRYGDRE-----FDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 HP+ D YG D QL + L R LHA L F HP TG+ + + Sbjct: 244 FSEQQHPLLGDPVYGGSGRLKTINDPQLLKRAKALGRQALHARLLGFQHPETGKYLEFSS 303 Query: 303 PMDEGLKRCLQKL 315 P+ E L+ + L Sbjct: 304 PLPEDLRSVIDYL 316 >UniRef50_B5YAZ5 Pseudouridine synthase n=2 Tax=Dictyoglomus RepID=B5YAZ5_DICT6 Length = 226 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 120/227 (52%), Gaps = 20/227 (8%) Query: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL------RPEARFLELVHRLDRDTS 148 ++YED+H+LV+NKP+G V G S ++E +A +P FL +VHRLD+ S Sbjct: 9 VIYEDNHLLVVNKPAGILVQGDITKSTTLLEISKAYIKEKYKKPGNVFLAIVHRLDKPVS 68 Query: 149 GVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVR 208 GV++ A+ + L E RE+ ++K+Y+AL +G ++ ++ LL ER R Sbjct: 69 GVVIFARNSKSAGRLSEAFRERKVEKEYIALCKGIFKVKKGTISESLL---WVEKERKAR 125 Query: 209 VSQEGKPSE--TRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREF 266 VSQ+ K T ++V E + +LVR P TGR HQ+R H Y GHPI D++YG Sbjct: 126 VSQDDKSKNAITHYEVLEEFKNLSLVRLIPETGRKHQLRAHLSYIGHPILGDEKYGGGRI 185 Query: 267 DRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQ 313 + +R+FLH + HP ++M EA + + L+ Sbjct: 186 FK---------DRIFLHCKKMAVPHPVRKDIMEFEAKIPDFWSEFLK 223 >UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGS9_PLALI Length = 345 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 98/327 (29%), Positives = 158/327 (48%), Gaps = 30/327 (9%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 ++ + A G RID++L + R + +G+V VN +K +L D + Sbjct: 16 VLTVEARAHGWRIDHYLSRLYPNFSRVAFQRTIEEGKVLVNGLPVKISRRLRVNDVIEF- 74 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 + ++ V P + ILY+D+++ V+NK + VH G G G + G A Sbjct: 75 --SLPAEPDQRVQP-----EDIPLDILYDDEYLCVINKTANMIVHPGRGNYRGTLAG--A 125 Query: 130 LRPEARFLE---------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 L+ L +VHRLDRDTSGVL+VAK + + L Q E+ ++K+Y A+V Sbjct: 126 LQFHFDSLSDVAGQYRAGIVHRLDRDTSGVLVVAKDNTVHQHLSRQFEERSVEKEYHAIV 185 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRV--SQEGKPSETRFKVEERYAFATLVRCSPVT 238 G+ Q V+ ++ ++ ER++ + + T ++V++R+ T V+ P T Sbjct: 186 WGEMQFDADYVET-YVRVSFRNRERMMVCPPGDNARQAATFYEVQQRFRGFTYVKLQPQT 244 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDR---EFDRQLTEAG-----TGLNRLFLHAAALKFT 290 GRTHQ+RVH + GHPI D Y + + L E T ++R LHA L F Sbjct: 245 GRTHQLRVHMHHLGHPIIADRLYEGKTCVKLSDILPETPEEADETLIDRQALHARRLAFN 304 Query: 291 HPGTGEVMRIEAPMDEGLKRCLQKLRN 317 HP T + M EAP+ ++ L L+ Sbjct: 305 HPVTKKRMVFEAPLPADFQKTLDTLKT 331 >UniRef50_Q2S3B7 Pseudouridine synthase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3B7_SALRD Length = 349 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 107/348 (30%), Positives = 166/348 (47%), Gaps = 62/348 (17%) Query: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV-----RIPPVR 72 G RID +L ++ I R ++KG ++VN +K Y +E GDE+ R PP++ Sbjct: 7 GGPRIDKYLTRFYPEASRTKIQRAIKKGHLKVNGTDVKKSYGVEPGDEIVFRLIRKPPMQ 66 Query: 73 VAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV--------I 124 E EA+ DV+ +E D +LV+NKP+G VH G G + Sbjct: 67 A---EPEAIP---------LDVV-HEGDDLLVVNKPAGMVVHPAPGHRSGTLVHALLHHV 113 Query: 125 EG---------------------LRAL--RPEARFLE--LVHRLDRDTSGVLLVAKKRSA 159 +G + AL P+ + +VHRLD+ TSG+L+VAK+ A Sbjct: 114 DGGEVAADDERDEVSEDEVGLSLVNALPQSPDHPVVRPGIVHRLDKGTSGLLVVAKRGRA 173 Query: 160 LRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETR 219 + L EQ + + + Y A+V G++ +++ + ++ V EGK + T Sbjct: 174 HQPLAEQFKAHTVDRRYRAIVWGRFAPSDGTIEGAIGRDPHHRQRMAVVPEDEGKWARTH 233 Query: 220 FKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAG---TG 276 ++ E +A ++V TGRTHQIRVH + GHP+ D +YG + R T++G T Sbjct: 234 YETVETHAHTSVVEFELETGRTHQIRVHARAQGHPLLGDPKYGGQRV-RYGTQSGTRRTF 292 Query: 277 LNRLF-------LHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 ++LF LHA L F HP T E +R EA +R L++LR Sbjct: 293 YDQLFETLPHPALHAYRLGFDHPTTEERLRFEADPPPAWRRVLRELRQ 340 >UniRef50_A8ZXZ8 Pseudouridine synthase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZXZ8_DESOH Length = 329 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 101/320 (31%), Positives = 153/320 (47%), Gaps = 24/320 (7%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + +A G R+D + Q S +++ G + V+ + KP YK+ + Sbjct: 9 LVTSAGHDGLRLDTLVAGQWDCSRHSAAL-LIKNGTILVDGRPQKPSYKVGVNQSIT--- 64 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGLRA 129 R+ ++ E P + +L+ED +LV+NKP G VH G G ++ L Sbjct: 65 GRIPSQKPEKPGPEPAPLP-----LLFEDAFLLVVNKPPGLVVHPAPGHEGGTLVNRLLH 119 Query: 130 LRP------EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 P E +VHRLDR+TSG L+VAK +A ++L + + + ++K YLALV GQ Sbjct: 120 HFPAIGTVGEPDRPGIVHRLDRNTSGALVVAKTAAAHQALSDMFKSRQVRKTYLALVYGQ 179 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 +S V P+ ++ L+ + V S + +P+ETR+KV + + A+L+ TGRTHQ Sbjct: 180 MKSTGGVVTLPIGRHSLERKKMSVS-SPQARPAETRWKVRKAFVDASLLELEIHTGRTHQ 238 Query: 244 IRVHTQYAGHPIAFDDRYGDREF-------DRQLTEAGTGLNRLFLHAAALKFTHPGTGE 296 IRVH P+ D Y + R E R LHA L+F HP TG Sbjct: 239 IRVHCTALQRPVVGDPTYPCKWTRKRQHFSSRASFELLNAAGRQMLHAWRLEFDHPVTGA 298 Query: 297 VMRIEAPMDEGLKRCLQKLR 316 M AP+ E +K L LR Sbjct: 299 PMCFTAPLFEDIKEMLHLLR 318 >UniRef50_C9M5C8 Pseudouridine synthase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M5C8_9BACT Length = 276 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 100/283 (35%), Positives = 137/283 (48%), Gaps = 18/283 (6%) Query: 38 IYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILY 97 + + RKG VR++ R K+ AG V +P E P +Q DV LY Sbjct: 1 MMKFFRKGSVRLDGARADFRTKVAAGQMVFVP------WEAPDAQPEVQVRHRPLDV-LY 53 Query: 98 EDDHILVLNKPSGTAVHGGS-GLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKK 156 D +LV+NKP+G + G L A +LVHRLDR+TSGV+++A Sbjct: 54 RSDSVLVINKPAGLLSQPDTKGEDSVATRALGYASDPAFGAQLVHRLDRNTSGVMILALD 113 Query: 157 RSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPS 216 ALRSL +E+ K YLALV GQ + APLLK+ +++VRV+ G+ + Sbjct: 114 GQALRSLMVCFKERTANKTYLALVSGQLPPS-GQIDAPLLKD---PDKKLVRVASNGERA 169 Query: 217 ETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTG 276 TRF+ +L +TGRTHQIRVH + GHPI D +YGD Q+ G Sbjct: 170 VTRFRRLATDGQFSLAEVEILTGRTHQIRVHMNHIGHPILGDAKYGDFSAKPQVRR--LG 227 Query: 277 LNRLFLHAAALKFTHPGTG--EVM--RIEAPMDEGLKRCLQKL 315 + R LHA L P E+ R +AP+ + QKL Sbjct: 228 IRRPMLHATCLVVNSPDDCLKEISGRRFDAPLAADMASVCQKL 270 >UniRef50_C2W5F3 Pseudouridine synthase n=4 Tax=Bacillus RepID=C2W5F3_BACCE Length = 307 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 90/312 (28%), Positives = 159/312 (50%), Gaps = 26/312 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + + +G ID+ L+ + G+PK +++++ + + VN +R L+ GD+++ Sbjct: 12 ITVPTKWSGMSIDSLLKEEW-GIPKKLLHKLRMEKGIIVNGERKVWSEMLQEGDKLQ--- 67 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 V + +EE V P + +++EDDH+L++NKP+ H + G + L A Sbjct: 68 VHMFAQEEYGVQPEYGDLE-----VIFEDDHVLIVNKPAHMDTHPSNKGGTGTLANLVAF 122 Query: 131 RPEARFLEL----VHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 + + +E +HRLD+DT+G ++ AK A + L E+ +++ YLALV G+ + Sbjct: 123 HLQMQGVETKVRHIHRLDKDTTGGVVFAKHGIAGVIMDRLLMERNIKRTYLALVEGKVRK 182 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA--FATLVRCSPVTGRTHQI 244 + + ++ + R RVSQ+G + T +K+E+ + TLV TGRTHQI Sbjct: 183 KQGIIDEAIGRDRHHATRR--RVSQKGDRAVTHYKIEKYFKKQDVTLVTLQLETGRTHQI 240 Query: 245 RVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPM 304 RVH ++GHP+ D YG + T + LHA + F HP T E + +EAP+ Sbjct: 241 RVHMSHSGHPLIGDVLYGGQ---------ATYMPYQALHAMRIHFLHPITKEEITVEAPL 291 Query: 305 DEGLKRCLQKLR 316 L ++ + Sbjct: 292 PNNLNNIIESFK 303 >UniRef50_C6CWL6 Pseudouridine synthase n=2 Tax=Paenibacillus RepID=C6CWL6_PAESJ Length = 316 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 109/316 (34%), Positives = 154/316 (48%), Gaps = 22/316 (6%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRI-LRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 V + AD AG+ + L +L GV +S++ R+ L + + VN R K+ GD V I Sbjct: 15 VEVGADMAGKDVRTVLERKL-GVSRSLLSRLKLTEYGITVNGVRAYTTAKVTEGDSVAI- 72 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG-----LSFGVI 124 R+ E E + P L I++EDD++LV+NKP+G VH G L+ G++ Sbjct: 73 --RMEEEISEDILPQ-----DLPLSIVFEDDYLLVVNKPAGIIVHPTKGHYTNTLANGIV 125 Query: 125 EGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQW 184 + RF VHRLD DTSG++++AK + L EQL+ + K Y A V G Sbjct: 126 HHWQVRGERVRF-RPVHRLDEDTSGLVVIAKNPYIHQQLSEQLQAGTIMKIYCAYVYGTP 184 Query: 185 QSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF--ATLVRCSPVTGRTH 242 +V AP+ +N RI V+ EG PS T +K + A+ VR TGRTH Sbjct: 185 SPADGTVGAPIDRNPEDPHVRI--VTPEGYPSVTHYKTAAVFGGGQASKVRLKLETGRTH 242 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH ++ G P+ D YG + ++ E T R LHA L THP T E A Sbjct: 243 QIRVHMKHIGCPLIGDGMYGLQT--GKVDEWETAAGRQALHAETLGLTHPMTKEWSEWTA 300 Query: 303 PMDEGLKRCLQKLRNA 318 + L + LR Sbjct: 301 ALPPDLVQLELALREC 316 >UniRef50_C6C294 Pseudouridine synthase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C294_DESAD Length = 292 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 93/264 (35%), Positives = 134/264 (50%), Gaps = 22/264 (8%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKG-VPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDE 65 + + V +T EAGQ++ FL ++ G VP+S I R +RKG VRV+K R KP ++ G Sbjct: 2 AAEFVQVTKAEAGQKLVRFLERRVDGAVPRSAIMRWIRKGNVRVDKGRCKPFDLVKEGQT 61 Query: 66 VRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIE 125 VRIPP + E + P L I+YEDD+ L + KP+G GG+G V + Sbjct: 62 VRIPPYKAEETAQHKKLPELP--------IIYEDDNYLAVCKPAGLPTQGGTGHDDSVAD 113 Query: 126 GLRALRPEARFLEL-VHRLDRDTSGVLLVAKKRSALRSLHEQLREKGM-QKDYLALVRGQ 183 L ++ +A + HRLDRDTSGV+L K + L + E G K YLA V G+ Sbjct: 114 RLLSMFADAHYKPAPAHRLDRDTSGVILAGKSHQGQKDLSDFFAEHGEGGKFYLAEVEGR 173 Query: 184 WQSHVKSVQAPLLKNILQSGER-----IVRVSQEGKPSETRFKVEERYAFATLVRCSPVT 238 W + L + +SG + +V ++ S + E+ ++L+ T Sbjct: 174 WP---EEDWVELHDKMEKSGSKGREKVVVGSGKDASSSVCPVTIGEK---SSLLIVKLHT 227 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYG 262 GRTHQIRV G PIA D +YG Sbjct: 228 GRTHQIRVQLSSRGFPIAGDVKYG 251 >UniRef50_B2KBB0 Pseudouridine synthase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBB0_ELUMP Length = 299 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 91/305 (29%), Positives = 146/305 (47%), Gaps = 43/305 (14%) Query: 12 AITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPV 71 +T R+D FL + +I ++++G+V VN K KP + L GD V I Sbjct: 6 TLTFSGTSARLDLFLSENKPDYSRGLIQNLIKQGKVTVNGKERKPAWPLAEGDNVEIE-- 63 Query: 72 RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGL-------SFGVI 124 P ++ L D+I++ED ++ V+NKPSG VH S + +F Sbjct: 64 ----------WPSVENKTGLKDLIIFEDKNMFVINKPSGMLVHPQSPVWEENPAAAFIGE 113 Query: 125 EGLRAL---RPEARFLE------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKD 175 E L +L P F + LVHRLD+DTSGV+++AK ++ E + M K Sbjct: 114 ETLVSLILANPPKNFEKGITRAGLVHRLDKDTSGVMIIAKNSKTQDAMVEMFANREMHKT 173 Query: 176 YLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCS 235 Y A+V G + P+ + +G +I + S+ G+ + T + V +R +L++ Sbjct: 174 YEAIVCGVVPDDKGIINVPIGR---VTGGKI-KASELGREAVTEYSVLQRKETVSLMKLH 229 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTG 295 PVTGRT+Q+RVH + G+P+ D Y G RL LH+ + +F HP T Sbjct: 230 PVTGRTNQLRVHMSWLGYPVLGDWLY-----------KGATAPRLMLHSKSAEFEHPFTS 278 Query: 296 EVMRI 300 + ++ Sbjct: 279 KPVKF 283 >UniRef50_C7RM94 Pseudouridine synthase n=11 Tax=Proteobacteria RepID=C7RM94_9PROT Length = 375 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 99/304 (32%), Positives = 154/304 (50%), Gaps = 18/304 (5%) Query: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKK-RIKPEYKLEAGDEVRIPPVRVAER 76 GQR+D L L +S + +R+G V V ++P ++L G+ + + + Sbjct: 38 GGQRLDQVLARLLSQHSRSRLQDWIREGRVAVGGAVTVEPRFRLWGGETIAL--TESTDE 95 Query: 77 EEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGLRALRPE-A 134 EA +P + I++EDD ++VL+K +G VH GSG G ++ GL P+ A Sbjct: 96 RAEASAPE-----EIPLRIVFEDDTLIVLDKQAGLVVHPGSGNWRGTLLNGLLHHAPQLA 150 Query: 135 RF--LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQ 192 R +VHRLD+DT+G+++VAK A L QL+ + +++ Y ALVRG + V Sbjct: 151 RVPRAGIVHRLDKDTTGLMVVAKTLEAQTDLVRQLQARSVKRCYQALVRGIVEG-AGIVD 209 Query: 193 APLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAG 252 AP+ ++ R+ VS G+P+ T ++V ER+ TL+ C+ TGRTHQIRVH Sbjct: 210 APIGRHPTVR-TRMAVVSG-GRPARTHYRVLERFVACTLIECALETGRTHQIRVHMTSIA 267 Query: 253 HPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCL 312 HP+ D YG G R LHA L HP +G+ M + + + + Sbjct: 268 HPLVGDPIYGG---GASRVPQGAVFPRQALHACRLALVHPASGKAMLWRSGVPADMAALI 324 Query: 313 QKLR 316 +LR Sbjct: 325 DRLR 328 >UniRef50_B9YI75 Pseudouridine synthase, RluA family n=1 Tax='Nostoc azollae' 0708 RepID=B9YI75_ANAAZ Length = 329 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 94/324 (29%), Positives = 160/324 (49%), Gaps = 35/324 (10%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPE-YKLEAGDEV 66 + ++ + + QR+D +L ++L+ + +S + +++ +G V +N + + ++ GD + Sbjct: 21 MTVINLLVSQNTQRLDLYLSSELQNLSRSRLQQLIEQGHVLLNDQVCTSKKVNVKVGDRI 80 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALA-DV---ILYEDDHILVLNKPSGTAVHGGSGLSFG 122 + P LQ + +A D+ ILYED+ +L+LNKP+G VH G G Sbjct: 81 CVE------------IPSLQPLKLVAEDIPLDILYEDEQLLILNKPAGLVVHPAPGHLDG 128 Query: 123 VIEGLRALRPEARFLE---------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQ 173 + + AL L +VHRLD+DT+G + +AK A + L QL+ K + Sbjct: 129 TL--VNALLAHCANLPGIGGVQRPGIVHRLDKDTTGAIAIAKTDIAYQHLQAQLQAKTAR 186 Query: 174 KDYLALVRGQWQSHVKSVQAPLLKNILQSGER-IVRVSQEGKPSETRFKVEERYAFATLV 232 ++YL +V G ++ + P+ ++ + IV Q G+ + T +++ ER + TL+ Sbjct: 187 REYLGVVYGVPKTESGIINLPISRHPQDRKKMAIVPTEQGGRTAITHWQIRERLSNYTLI 246 Query: 233 RCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHP 292 TGRTHQIRVH+ GHPI D YG G L LHA LK HP Sbjct: 247 HFQLETGRTHQIRVHSAKIGHPIVGDSVYGAGR------SVGVNLAGHALHAWQLKLQHP 300 Query: 293 GTGEVMRIEAPMDEGLKRCLQKLR 316 +G+ +++ A + L+ LR Sbjct: 301 ISGDWIQVTASPPQTFTTLLEVLR 324 >UniRef50_C8X1I9 Pseudouridine synthase, RluA family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1I9_DESRD Length = 547 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 108/312 (34%), Positives = 160/312 (51%), Gaps = 25/312 (8%) Query: 13 ITADEAGQRIDNFLRTQLK--GVPKSMIYRILRKGEVRV-NKKRIKPEYKLEAGDEVRIP 69 + A EAG+R+D FL +L GV +S I + +R+ VRV ++ + K+ G +V Sbjct: 17 VEAGEAGKRLDKFLSDRLADLGVSRSRISQWIRQERVRVAGALCLQGKTKVLNGQKV--- 73 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGLR 128 V +A + + P + V ++Y D ++V+NK +G VH G+G G ++ L Sbjct: 74 -VLLAPSLQSGIKPEVGPVE-----VVYSDPDVVVVNKAAGVTVHPGTGCESGTLVHHLA 127 Query: 129 ALRPE-ARF----LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 AL PE ARF +VHRLD+DTSG+L VA SA +L + + K+YL LV G+ Sbjct: 128 ALYPELARFDGERPGVVHRLDKDTSGLLTVALNESARLALTRSFARREVDKEYLTLVHGR 187 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFK--VEERYAFATLVRCSPVTGRT 241 ++ +V PL ++ QS R+ V + GK + TRFK +L+R +TGRT Sbjct: 188 PEAE-GTVDHPLGRDP-QSKIRMAVVPRGGKEALTRFKRVWTSPDGRVSLLRVRILTGRT 245 Query: 242 HQIRVHTQYAGHPIAFDDRYGDR---EFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM 298 HQIRVH Y G P+ D YG + F R LHA L F HP +G ++ Sbjct: 246 HQIRVHMAYLGFPLVGDALYGPQAQAAFQRSRPLLARLAKHHMLHAWRLAFPHPRSGRMV 305 Query: 299 RIEAPMDEGLKR 310 E M + + R Sbjct: 306 CCEQAMPKAMWR 317 >UniRef50_Q0BWH2 Pseudouridine synthase n=3 Tax=Alphaproteobacteria RepID=Q0BWH2_HYPNA Length = 341 Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 105/350 (30%), Positives = 163/350 (46%), Gaps = 61/350 (17%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKK-RIKPEYKLEAG--DEV 66 ++ A +AGQR+D FL + +G+ +S ++ +G V V P ++ G V Sbjct: 5 VITSEAADAGQRLDAFLGARAEGISRSRAKTLIEEGAVTVGGAVETNPRAPVKKGLVYAV 64 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-- 124 +PP A E EA+ L+ IL+ED H+++LNK +G AVH G G + Sbjct: 65 NMPPPVPAMPEAEAIP--LE--------ILFEDAHLVILNKAAGMAVHPAPGSQTGTLVN 114 Query: 125 ----------EGLRAL-RPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQ 173 G+ + RP +VHRLD+ TSGV++ AK SA L + Sbjct: 115 ALLHHCQGQLSGIGGVERPG-----IVHRLDKLTSGVMVAAKTESAHTGLAALFERHDID 169 Query: 174 KDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRV-----SQEGKPSETRFKVEERYAF 228 + Y A+ RG + +++A + ++ +S + + V S + + T +K E + + Sbjct: 170 RVYRAVTRGAPRPLSGTIEAAIARS--ESDRKKMSVHRNPDSPAARHAVTHYKAVETFGY 227 Query: 229 ---------ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYG-------------DREF 266 A L+ C TGRTHQIRVH ++G P+ D YG + + Sbjct: 228 KDRATRLPAAALLECRLETGRTHQIRVHMAHSGAPLIGDPVYGRQAGIMAWKAPGSEARY 287 Query: 267 DRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLR 316 D+ L A +R LHAA L F HP TGE +R EAP+ E + + LR Sbjct: 288 DKALA-AARAFSRQALHAAVLGFVHPITGETLRYEAPLPEDMTGLIAALR 336 >UniRef50_Q3YSF8 Pseudouridine synthase n=5 Tax=canis group RepID=Q3YSF8_EHRCJ Length = 308 Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 89/314 (28%), Positives = 162/314 (51%), Gaps = 20/314 (6%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 K + D+ R+D F+R LK +P+S++ + LRKG V ++ ++K +++ G+ + I Sbjct: 4 KYYTVKEDDQDVRVDKFVRRVLK-IPQSLVEKFLRKGIVLLDNAKVKSNTRIKTGNVIYI 62 Query: 69 PPVRV------AEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG 122 + +R + S +L + +++ ILYEDD +L++NKP+G +V GG+ + Sbjct: 63 KCNTIIGEEIHTKRICKTDSSYL--INLISNSILYEDDDVLIINKPAGVSVQGGTKVRIS 120 Query: 123 VIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 + + L +R + + +VHRLD+DTSG+L++A+ A R + + + + ++K YLAL +G Sbjct: 121 ISDILDKIR-DGESMRIVHRLDKDTSGILMLARNARASRLIMHEFKNRRVEKKYLALTQG 179 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFAT-LVRCSPVTGRT 241 ++ V + + K E I + + + T F V ++ + L+ P TGR Sbjct: 180 IPKNDVGEINHSITKKKHNFYENIGTGNSIFQEAITSFFVLKKLPYDIGLLELKPKTGRK 239 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIR+H + G I D +YG +F + + L LHA L + + Sbjct: 240 HQIRIHLSHIGCSIIGDKKYG--KFCNHVLN-----DHLQLHAHFLSI--DIGNKKLSFT 290 Query: 302 APMDEGLKRCLQKL 315 APM + +K + L Sbjct: 291 APMPDYMKDTIMNL 304 >UniRef50_Q0F3G2 Possible pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G2_9PROT Length = 325 Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 97/316 (30%), Positives = 151/316 (47%), Gaps = 33/316 (10%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR--- 67 + ++ + +G+R+D L + + +S I +LR+G VR + + + R Sbjct: 13 ITVSTEASGKRLDAVLAAACE-LSRSRIQTLLREGHVRTAGGSVISQASARVWEGERYLL 71 Query: 68 -IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 +PPV+ P + + L IL+ED+H++VLNKP+G VH G G + Sbjct: 72 TLPPVK----------PLILEPEDLPLDILFEDEHLIVLNKPAGIVVHPSHGHDHGTL-- 119 Query: 127 LRALRPEARFLE---------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 + AL + L +VHRLD+DTSG L++AK + L E E + + Y+ Sbjct: 120 VHALLHHCKTLPGINGVERPGIVHRLDKDTSGSLVIAKSEVVHQRLSEMFAEHNLNRQYI 179 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPV 237 A RG VK ++ P+ ++ Q + + V+ G+ S T VE + + +R + Sbjct: 180 AWCRGVPSWRVKCIELPIGRHPHQRQK--MAVTDSGRESITDAAVEHIFGPFSQMRLTLH 237 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYG-----DREFDRQLTEAGTGLNRLFLHAAALKFTHP 292 TGRTHQIRVH + P+ D Y RE A L+R LHA L+F HP Sbjct: 238 TGRTHQIRVHMAHENLPVLGDPVYARSYHPGREIPEPARHAIATLSRQALHAELLEFDHP 297 Query: 293 GTGEVMRIEAPMDEGL 308 +GE M AP+ E L Sbjct: 298 ISGEPMSFRAPLPEDL 313 >UniRef50_B0T2G2 Pseudouridine synthase n=6 Tax=Caulobacteraceae RepID=B0T2G2_CAUSK Length = 286 Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 89/239 (37%), Positives = 126/239 (52%), Gaps = 19/239 (7%) Query: 86 QKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL----RPEARFLELVH 141 +++A ++++EDD + VLNKP+G + GG + + + L AL RP R L+H Sbjct: 45 EEIAFTKSLVIHEDDSVFVLNKPAGLSSQGGRIQAHTLDDLLWALARRDRPRPR---LIH 101 Query: 142 RLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR-GQWQSHVKSVQAPLLKNIL 200 RLDRDTSGV+L A+ + A L + L K +K Y A+V G + + +PL + + Sbjct: 102 RLDRDTSGVILTARTKPAATFLGKALMGKRFRKTYWAIVTPGAPEPRGGQIDSPLRRESI 161 Query: 201 QSGERIVRVSQEGKP----SETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIA 256 E +RV + P + +R++ A LV SP TGR HQ+RVH G PIA Sbjct: 162 GR-EAYMRVCEADHPDAETARSRYRTLAATEGAALVELSPDTGRMHQLRVHMASIGRPIA 220 Query: 257 FDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 D RYG L G + RL LHAA L F HP GE RI AP+ + ++ L KL Sbjct: 221 GDSRYGG-----ALMLGGAPVPRLMLHAANLVFPHPEGGE-RRISAPIPDDMRAILAKL 273 >UniRef50_Q31HX2 Pseudouridine synthase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31HX2_THICR Length = 241 Score = 126 bits (317), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 125/232 (53%), Gaps = 15/232 (6%) Query: 83 PHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS--FGVIEGLRALRPEARFLELV 140 P L + D +LYEDD I+V+NKP+G G L ++ ++ P A +V Sbjct: 17 PKLMSIPFQLDWVLYEDDDIIVVNKPAGLLSVPGKDLDPEMNLLAQVQKHVPTAL---IV 73 Query: 141 HRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNIL 200 HRLD DTSG++++AK +++ R L Q +++ +K Y A+ G+ + + P+ + Sbjct: 74 HRLDMDTSGIMILAKHKASHRHLSIQFQDRLTEKTYQAICFGKPSTSQGHLNLPMRCDWE 133 Query: 201 QSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDR 260 +I+ + Q GK + T +K+ +Y A V +PVTGR+HQ+R+H + GHPI D+ Sbjct: 134 NRPLQIIDLKQ-GKAASTHWKLTAQYDNAFEVNLTPVTGRSHQLRLHMKMLGHPILGDNL 192 Query: 261 YGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCL 312 Y D ++ RL LHAA+LK THP T + M E P LK+ L Sbjct: 193 YAD-------PQSFAASKRLLLHAASLKVTHPVTKKTMLFEHP--TSLKKFL 235 >UniRef50_D0MK65 Pseudouridine synthase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MK65_RHOM4 Length = 235 Score = 126 bits (317), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 88/233 (37%), Positives = 125/233 (53%), Gaps = 31/233 (13%) Query: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL---------ELVHRLDR 145 ILYEDD +L ++KP G A I RP AR L +VHRLD+ Sbjct: 5 ILYEDDDLLAVHKPEGLAA----------IPERDPSRPSARRLLEAARGERLWVVHRLDK 54 Query: 146 DTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGER 205 + SGVLL A+ A R ++ ++ ++K Y ALV G+ + ++AP+ + SG R Sbjct: 55 EASGVLLFARNAEAHRYMNTLFEQRQVRKVYRALVHGRLEPGQGQIRAPI--RMYGSG-R 111 Query: 206 IVRVSQEGKPSETRFKVEERYAFA-TLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDR 264 + + GKPSETR++V E A +L+ P+TGR HQIRVH + GHPI D RYGDR Sbjct: 112 MGVDPERGKPSETRYRVLEYLDEAYSLIEALPLTGRRHQIRVHCYHIGHPIVGDPRYGDR 171 Query: 265 EFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 ++ RL LHA +++F HP G+ + I AP+ E ++ L LR Sbjct: 172 SVQQRYP-------RLMLHALSIRFRHP-NGQELEIVAPVPESFQQVLDALRT 216 >UniRef50_B6WPU4 Pseudouridine synthase n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WPU4_9DELT Length = 335 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 100/289 (34%), Positives = 141/289 (48%), Gaps = 30/289 (10%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 M E P V + E GQ++ FL+ +L +P S+++R +R G+VR+N R KP + Sbjct: 1 MMGEAPDPNTVIVDPREGGQKLLQFLQRRLD-LPPSLLHRWIRTGQVRINGGRAKPFGLV 59 Query: 61 EAGDEVRIPPVRVA-EREEEAVS------------PHLQKVAALADVILYEDDHILVLNK 107 AGD VR+PP + R +A P Q + A L +D + V K Sbjct: 60 AAGDSVRLPPFALGMSRRSKATGGQASPEQGHEPRPRAQALPP-APRPLQKDGDLWVFCK 118 Query: 108 PSGTAVHGGSGLSFGVIEGLRALRPEARFLEL-VHRLDRDTSGVLLVAKKRSALRSLHEQ 166 P+G H G+G + L A +A F VHRLD+DTSG+LLVA + LR + Sbjct: 119 PAGLPTHPGTGHEDSLSSRLAAGAGDAPFKPTPVHRLDKDTSGILLVAASFAVLREMTTA 178 Query: 167 LREKGMQKDYLALVRGQW-QSHVKSVQAPLLKNI-LQSGERIVRVSQEGKPSETR----- 219 LRE+ M+K+YLA V G W S V+ + L K +G + V Q G P + Sbjct: 179 LRERRMKKEYLAWVEGLWPHSGVRLFRHWLRKEAGTGNGREQMHVRQTGAPDKGETEALL 238 Query: 220 ----FKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDR 264 +VE+R + + +TGRTHQIR GHPI D +YG R Sbjct: 239 LVRPVRVEDRRSLLLVRL---LTGRTHQIRAQLSSLGHPIEGDVKYGAR 284 >UniRef50_B4U613 Pseudouridine synthase, RluA family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U613_HYDS0 Length = 308 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 103/326 (31%), Positives = 160/326 (49%), Gaps = 40/326 (12%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGD--EVR 67 + IT D AG+RID + K + + I RI+++ V +N +++ K K+ D E Sbjct: 4 IKITPDIAGERIDVLISNIYKDISREYIKRIIKENGVLINGEKVFKSSKKVFENDVLEFE 63 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG--------- 118 IPP + + + + + H+ ILYED+ + V+ KPSG H G G Sbjct: 64 IPPPKKLDVKAQDI--HID--------ILYEDNDLAVVVKPSGMPSHTGPGHDENTLVNA 113 Query: 119 --LSFG---VIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQ 173 FG VI G+ RP +VHRLDR T G++++AK + + L + K + Sbjct: 114 LLAKFGDLSVIGGVE--RPG-----IVHRLDRYTHGLMVIAKNDVSHQKLSLMFKNKEVD 166 Query: 174 KDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVR 233 K Y A+V G + ++++ + ++ + V+ EGK + T++ +E+ A+L+ Sbjct: 167 KHYKAIVYGISRFKEQTIETFIRRH--PTNRLKFEVANEGKLAITKYSLEKPLKNASLLD 224 Query: 234 CSPVTGRTHQIRVHTQYAGHPIAFDDRYGDRE--FDRQLTEAGTGLNRLFLHAAALKFTH 291 TGRTHQIRVH Y GHPI D YG + FD+ L E G R L A L F H Sbjct: 225 IKIYTGRTHQIRVHMSYIGHPIVGDTLYGYKHSYFDKTL-EHMIG-KRFLLVAYKLSFLH 282 Query: 292 PGTGEVMRIEAPMDEGLKRCLQKLRN 317 P + + M E M + K L+ L + Sbjct: 283 PKSQKPMEFEIDMPDYFKNVLKYLES 308 >UniRef50_D1Y726 Ribosomal large subunit pseudouridine synthase D n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y726_9BACT Length = 315 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 102/313 (32%), Positives = 153/313 (48%), Gaps = 23/313 (7%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP--- 69 I+ + G+R+D+ LR GVP + + RKG VR+ KR +P ++ G V +P Sbjct: 7 ISRHDEGRRLDSVLRGMWPGVPLGAMMKYFRKGAVRLEGKRCQPNDRVLEGQHVWVPWEE 66 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 P V E +P + DVI Y D ++V+NKP+G V+ Sbjct: 67 PGTVGRAEMPDGTPRRLPL----DVI-YSDRCVMVVNKPAGLLSQPDVKGEDSVVTRALG 121 Query: 130 LRPEARFL-ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHV 188 + F +LVHRLDR+TSGV+ +A R+L E + + K Y A+V G+ Sbjct: 122 YAVDPEFPPQLVHRLDRNTSGVMALALDGPTTRALMECFKARRADKRYWAIVIGELPERG 181 Query: 189 KSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHT 248 + + PLLK+ + +++VRV +G+ + T +K +L +TGRTHQIRVH Sbjct: 182 R-IDVPLLKD---ADKKLVRVDPKGERAVTEYKRLTSSGAFSLAEVHLLTGRTHQIRVHM 237 Query: 249 QYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALK------FTHPGTGEVMRIEA 302 + GHP+ D +YGD QL G+ R LHA +L F G+ R A Sbjct: 238 NHVGHPLLGDVKYGDFGSKGQLRS--LGVKRPMLHARSLTLNGLPAFLSHLEGKTFRAPA 295 Query: 303 PMDEGLKRCLQKL 315 P D L+R ++KL Sbjct: 296 PDD--LRRVMEKL 306 >UniRef50_B8J0V1 Pseudouridine synthase n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J0V1_DESDA Length = 360 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 91/294 (30%), Positives = 149/294 (50%), Gaps = 29/294 (9%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 +I + E+GQ++ FL+ +L +P++M++R +R G+VR+N R KP +++ GD VR Sbjct: 19 TEIPVVQEPESGQKLLQFLQRRLN-LPQAMLHRWVRTGQVRINGSRCKPFSRVQTGDTVR 77 Query: 68 IPP--VRVAEREEEAVSPHLQKVAALADV---------ILYEDDHILVLNKPSGTAVHGG 116 +PP +++A + + A K + D ++ + ++ +KP+G VH G Sbjct: 78 LPPFAMKMAAQCDSASPTPASKGKSKDDAPEDGPPLPPLVGKSGYLWAFDKPAGLPVHPG 137 Query: 117 SGLSFGVIEGLRALRPEARFLEL-VHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKD 175 +G + L F+ VHRLDR TSG++LVA +AL LR M K+ Sbjct: 138 TGHEDSLTTRLSCHFAGVSFMPTPVHRLDRGTSGIILVAASYAALDETQRALRANAMHKE 197 Query: 176 YLALVRGQWQSHVKS--VQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF---AT 230 Y+A V G+W H ++ V+ L K + ER+ V + ++ + + A+ Sbjct: 198 YVAWVAGRW-PHTQTCLVRHFLRKEAVDGFERVRPVKADAPDAKEALCLVRALSIADRAS 256 Query: 231 LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHA 284 LV+ +TGRTHQIRV GHP+ D +YG T AG L+LH+ Sbjct: 257 LVQVRLLTGRTHQIRVQLSSLGHPVLGDTKYGQ-------TRAGVA---LYLHS 300 >UniRef50_C4XFS9 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=C4XFS9_MYCFE Length = 315 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 93/299 (31%), Positives = 152/299 (50%), Gaps = 35/299 (11%) Query: 20 QRIDNFLRTQLKGVPKSMIYRILRKGEVRVNK--KRIKPEYKLEAGDEVRIPPVRVAERE 77 +RID ++ Q + ++ I ++ +G V +N + K Y + G E+ I + E + Sbjct: 18 ERIDKYI-GQNSELSRNDIKELIEQGAVYINDNVQVHKCNYIVREGQEITIVKLLNKEIK 76 Query: 78 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGL-----RALR 131 E V+ L I YEDD ++++NKPS VH G + ++ GL L Sbjct: 77 IEPVNIPLD--------IKYEDDDLVIINKPSNLVVHPSPGHYNDTLVNGLLYHFKNNLS 128 Query: 132 PEARFLE--LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVK 189 E L +VHR+D+DTSG+L++AK SL + L+ +++ YLA+VRG ++ + Sbjct: 129 NENGLLRPGIVHRIDKDTSGLLIIAKNNKMHNSLTDMLKRHEIERSYLAIVRGLIENPLT 188 Query: 190 SVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF----ATLVRCSPVTGRTHQIR 245 + P+ +N + +++ V +EGK + T + + + +LVRC TGRTHQIR Sbjct: 189 KINLPIARNTVD--RKMMSVHKEGKEAITFVHLLKHFYLDKEPMSLVRCELKTGRTHQIR 246 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPM 304 VH Y HP+ YGD + + + E LHA LKF HP T + + + AP+ Sbjct: 247 VHLSYIKHPV-----YGDPTYGKSVDEFNQR-----LHAYKLKFIHPLTKKEICVYAPV 295 >UniRef50_B6J6C4 Pseudouridine synthase n=7 Tax=Coxiella burnetii RepID=B6J6C4_COXB1 Length = 327 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 93/316 (29%), Positives = 159/316 (50%), Gaps = 23/316 (7%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNK-KRIKPEYKLEAGDEVRIPPV 71 I + AG R+D L +S + +R G V+V+ ++ K K+ + I Sbjct: 16 IPPELAGARLDQVLAKLFPDYSRSQLQNWIRGGHVKVDGIQKTKAREKVRENQFIEI--- 72 Query: 72 RVAEREEEAVSPHLQKVAALADV-ILYEDDHILVLNKPSGTAVHGGSGL-SFGVIEGLRA 129 E + P+ + V + ++YED+ +LV+NKP G VH G+G+ +I L Sbjct: 73 ------EAQLEPNERWVPQPIPLDVIYEDETLLVINKPVGLIVHPGAGVRDQTLINALLH 126 Query: 130 LRPEARFLE---LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 P + ++HRLD+DTSG+LL+A+ ++ +L + ++ + + ++Y A+V+G S Sbjct: 127 YDPSLSVVPRAGIIHRLDKDTSGLLLIARTLASHHALIKAMKARQIVREYEAIVKGVLIS 186 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 ++++AP+ ++ + + V + G+P+ T F++ +RY T +R TGRTHQIRV Sbjct: 187 G-RTIEAPVGRHPIHRTR--MAVVEFGRPAITHFRIIKRYRAHTHIRVQLETGRTHQIRV 243 Query: 247 HTQYAGHPIAFDDRYGDR-----EFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 H + HP+A D YG L A L R LH A L+F+HP M Sbjct: 244 HMAHIHHPLAGDPVYGSHVGIPVHLSDPLQTALKTLKRQALHGATLQFSHPVDQRPMACH 303 Query: 302 APMDEGLKRCLQKLRN 317 AP+ + L+ L + Sbjct: 304 APLPADMAHLLECLED 319 >UniRef50_A0Y082 Pseudouridine synthase n=2 Tax=Alteromonadales RepID=A0Y082_9GAMM Length = 235 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 120/217 (55%), Gaps = 16/217 (7%) Query: 95 ILYEDDHILVLNKPSGTAVHGG------SGLSFGVIEGLRALRPEARFLELVHRLDRDTS 148 ILY+D+ ILV+NKPSG G + + ++ G + L P +LVHRLD TS Sbjct: 24 ILYQDNDILVINKPSGLLSLSGKNSENWDSVHYRLVNGQKGLTPAFLKAKLVHRLDLGTS 83 Query: 149 GVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVR 208 G++LV+ + + L++Q + + ++K Y+A+++G + AP+ K+ Q R+ Sbjct: 84 GIMLVSLNDVSSKHLNKQFQLRSVKKHYVAVLQGCISEDRGQIDAPIAKDT-QLFPRVKI 142 Query: 209 VSQEGKPSETRFKVEERYA--FATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREF 266 EGKP+ T F V +R A T V SP+TGRTHQ+R+H+ + GHPI D Y Sbjct: 143 CKLEGKPAVTEFNVIKRLANPVRTYVHFSPLTGRTHQLRIHSHFIGHPILGCDLYKSAHS 202 Query: 267 DRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 ++ L++ RL LHA+ L F HP T + + I P Sbjct: 203 EK-LSK------RLQLHASDLFFEHPTTNQAIHIHCP 232 >UniRef50_C7RHG0 Pseudouridine synthase n=4 Tax=Anaerococcus RepID=C7RHG0_ANAPD Length = 318 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/300 (29%), Positives = 154/300 (51%), Gaps = 29/300 (9%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 +K V I+ ++ QR D FLR + P S+I + +RK ++N KR K + + D V+ Sbjct: 1 MKEVRISENDGNQRFDRFLRKYFENAPLSVIQKNIRKKNFKINDKRAKKDDFVYPNDIVK 60 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG--VIE 125 + E ++ ++ K + I+YED++I++++K SG H S +G +++ Sbjct: 61 MYIK--DEDYDKWITKIDYKPSDFDLDIVYEDNNIIIMDKKSGLLTHSSSKKDYGNNLVD 118 Query: 126 GL--------------RALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG 171 + R +P +V+RLDR+T+G+++ AK +LRSL++ +RE Sbjct: 119 NMLHYLYKTKSFDMSDRTFKPA-----VVNRLDRNTAGLVIGAKNAESLRSLNKAIRENK 173 Query: 172 MQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATL 231 + K YL +V+G + S+ + KN V S+ GK +T FK E +L Sbjct: 174 IDKFYLTIVKGYVEKEF-SIDTHISKN---DNRNRVSKSRNGKRIKTNFKPLETNKKFSL 229 Query: 232 VRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTH 291 + C +TG+THQIR + PI D +YGDR +++L + G+N L A ++F++ Sbjct: 230 LECELITGKTHQIRFSLKENSTPIIGDRKYGDRNTNQKLRKF--GINNQILLAYKIRFSN 287 >UniRef50_A6DCZ8 Pseudouridine synthase n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DCZ8_9PROT Length = 293 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/219 (35%), Positives = 117/219 (53%), Gaps = 22/219 (10%) Query: 96 LYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL-----ELVHRLDRDTSGV 150 ++E DH + +KPSG A+H + ++L + R L LVHRLD++TSG+ Sbjct: 72 IFETDHFAIFDKPSGVAIHPKK------LANTKSLLDDVRLLYGNDANLVHRLDKETSGL 125 Query: 151 LLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVS 210 ++ +K + A L + + K +QK YLAL++G + +++ P+ N ++ + V +S Sbjct: 126 VIASKNKFAESILKQAFQNKEIQKKYLALIKGHLDKEI-TIKKPIAVNKDENIKVKVIIS 184 Query: 211 QEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYG-DREF-DR 268 EGK S T K ++ TLV C P+TGR HQIR+H GHPI D YG D EF D+ Sbjct: 185 DEGKESITLVKPIKKIGKNTLVECIPLTGRQHQIRIHLYSIGHPIVGDPLYGVDNEFADK 244 Query: 269 QLTE--------AGTGLNRLFLHAAALKFTHPGTGEVMR 299 L + TG NRL LHA L+F +++ Sbjct: 245 YLKKLVDENERIQKTGANRLMLHAYKLEFEFMNNKYIIK 283 >UniRef50_P59838 Ribosomal large subunit pseudouridine synthase D n=3 Tax=Gammaproteobacteria RepID=RLUD_BLOFL Length = 321 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 95/323 (29%), Positives = 157/323 (48%), Gaps = 21/323 (6%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMI-YRILRKGEVRVNKKRIKPEYKLEAGDEV 66 +K + + ++G R+D L L +S I + IL K V N+ P K+ G+ + Sbjct: 4 IKPMIVQVHQSGYRLDYILSKLLPQYSRSQIKHWILNKKVVVNNQVSTLPRKKVVYGELI 63 Query: 67 RIPPVRVAE-REEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VI 124 I + + + E + P + I+YED+ ILV+NK S VH G G G V+ Sbjct: 64 EIKYINNNDICKSEDIVPQ-----NIPLNIIYEDNDILVINKASNMVVHPGIGHYQGTVL 118 Query: 125 EGLRALRPEARFLE----LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 L P + +V RLD+DT+G++++AK SA +L + + + K+Y A+V Sbjct: 119 NALLYRYPSILKISKQAGIVQRLDKDTTGLMIIAKTVSAYDNLLRSFKLRKVVKEYDAIV 178 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 G++ S+ V P+ ++ + + V GK + T + V E + + VR + TGR Sbjct: 179 YGKFTSNAGVVNQPMRRHF--AKRTFMSVHYTGKSAVTYYSVVEEFKAHSRVRINLKTGR 236 Query: 241 THQIRVHTQYAGHPIAFDDRY-GD------REFDRQLTEAGTGLNRLFLHAAALKFTHPG 293 THQIRVH Y HP+ D +Y G+ ++ +L NR LHA L+ HP Sbjct: 237 THQIRVHMAYINHPLVGDQKYKGNFSVFDIKKMSDELNNYLLDFNRQALHACTLQLLHPI 296 Query: 294 TGEVMRIEAPMDEGLKRCLQKLR 316 T M+ AP+ + + + + L+ Sbjct: 297 TQVQMKWNAPLPQDILQLIAILK 319 >UniRef50_Q0ANT2 Pseudouridine synthase n=2 Tax=Hyphomonadaceae RepID=Q0ANT2_MARMM Length = 330 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 102/326 (31%), Positives = 158/326 (48%), Gaps = 32/326 (9%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 V+ + + A E G R+D + + + V M+ ++ RKG++RV+ R+K + ++ G E+ Sbjct: 3 GVQTIKVEATEDGSRVDRWFKRRFPHVSAIMVQKLCRKGQIRVDGGRVKGDSRVHEGQEI 62 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGS-------GL 119 RIPP+ + +A + +++Y+DD ++ NKP+G AV GGS G+ Sbjct: 63 RIPPLPEPGERPPVNRMSDEDIAYVKSLVIYQDDELIAFNKPAGLAVQGGSKTTRHLDGM 122 Query: 120 SFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 EGL RP LVHRLD+DTSG+L+V K A L + + +K Y A+ Sbjct: 123 LDAFGEGLD--RP-----RLVHRLDKDTSGILIVGKGPKATARLAKAFQSHKTRKTYWAI 175 Query: 180 VRGQWQSHVKSVQAPLLKNILQSG---ERIVRVS----QEG-KPSETRFKV-EERYAFAT 230 G + + ++ ++ SG ER V+ EG + + TR+ V E A+ Sbjct: 176 AIGVPKPKMGEIKG-FMRKAAASGVDSERETMVAAGHGDEGAQHALTRYVVIGEAGQKAS 234 Query: 231 LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRY-GDREFDRQLTEAGTGLNRLFLHAAALKF 289 V PVTGRTHQ+RVH G I D +Y R L RL LHA L+ Sbjct: 235 WVALRPVTGRTHQLRVHLAAMGTAILGDKKYTCHRPAPEDLG------RRLCLHARRLEI 288 Query: 290 THPGTGEVMRIEAPMDEGLKRCLQKL 315 PG G+ + + A + LK+ L Sbjct: 289 PRPG-GKPLVLTADLPPALKKIYDTL 313 >UniRef50_Q5PAD0 Pseudouridine synthase n=5 Tax=Anaplasma RepID=Q5PAD0_ANAMM Length = 327 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 93/332 (28%), Positives = 167/332 (50%), Gaps = 44/332 (13%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPE-YKLEAGDEVRIP 69 V +T ++ QRID + L+ + ++ ++ G+V ++ + I Y + GD + Sbjct: 7 VCVTKEDDQQRIDKLISCALE-ISRNRAQGLIAGGQVTISGRVINNNSYLTKTGD---VY 62 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIE---- 125 + A ++ +SP+ + ++YED ++V++K AVH G+G+ I Sbjct: 63 TIVTAVQKPSTLSPNYD----IDLKVVYEDHDVIVIDKDPYIAVHPGNGIEHHTITNALL 118 Query: 126 -----GLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 GL+++ +R +VHRLD+DTSG+++ AK +A L E+L +G +K+YLA+ Sbjct: 119 ARFGAGLQSVGSSSR-PGIVHRLDKDTSGLMVAAKTENAYYRLSEELANQGFKKEYLAVA 177 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVR--------VSQEGKPSETRFKVEERYA-FATL 231 G + P + ++ + R+ R + GKP++T ++VE+ A+L Sbjct: 178 WG--------IPCP-KRGVIHTNIRVKRSDITMMEAANSGGKPAKTEYEVEQELGEVASL 228 Query: 232 VRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGT-----GLNRLFLHAAA 286 +RC+ TGRTHQIRVH + GH I D +YG ++ +G R LHA+ Sbjct: 229 IRCTLHTGRTHQIRVHMSHIGHSIVGDQKYGKN--CKKCMRSGVPPDVKNFRRQALHASL 286 Query: 287 LKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNA 318 L F HP TG+ + + + +++ + L A Sbjct: 287 LGFRHPSTGKYIEFTSKPADDIQQLISALERA 318 >UniRef50_Q4FN11 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q4FN11_PELUB Length = 326 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 94/324 (29%), Positives = 160/324 (49%), Gaps = 32/324 (9%) Query: 16 DEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRIPPVRVA 74 DE R+D F+ + + ++ I ++ K ++++N + I P K+ +GDE+ + ++ Sbjct: 12 DENNLRLDVFINKRENLISRTRIKNLILKEKLKINDQIINSPSKKVLSGDEINL---QIP 68 Query: 75 EREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI---------E 125 E +E ++ P+ K+ I+YEDD +L++NKP+G +H G+G I + Sbjct: 69 EPKEASLKPYNFKLQ-----IVYEDDDLLIINKPAGIIMHPGAGNYDETIVNALMHYNKD 123 Query: 126 GLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 L + E R +VHR+D+DTSG++++AK +L Q E + + Y L+ G+ + Sbjct: 124 SLSTIGDELR-PGIVHRIDKDTSGLIVIAKNNETHENLSHQFSEHTITRVYQLLIWGKLR 182 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQ-EGKPSETRFKVEERY-----AFATLVRCSPVTG 239 + + ++ +++ VS +GK + T +K E + +LV C TG Sbjct: 183 PSSGKIDTFITRS--SKNRQMMEVSNSKGKRAITNYKTIEIFENDKTPTLSLVECRLETG 240 Query: 240 RTHQIRVHTQYAGHPIAFD-----DRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGT 294 RTHQIRVH + G+ I D + D L L+R FLHA L F HP T Sbjct: 241 RTHQIRVHMTHMGNSIMGDGKYKKKYKKLKNIDTNLENLIYKLDRQFLHAQTLGFIHPRT 300 Query: 295 GEVMRIEAPMDEGLKRCLQKLRNA 318 E M + + + L+ L LRN Sbjct: 301 NEEMVFTSILPQELENILVLLRNT 324 >UniRef50_B8K915 Pseudouridine synthase n=5 Tax=Vibrio RepID=B8K915_VIBPA Length = 254 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 83/217 (38%), Positives = 122/217 (56%), Gaps = 13/217 (5%) Query: 95 ILYEDDHILVLNKPSGT-AVHGGSGLSFGVIEG-LRALRPEARFLELVHRLDRDTSGVLL 152 I++ED+HILV NKPSG +V G + + L A+ P+ +++VHRLD DTSG++L Sbjct: 25 IVFEDEHILVANKPSGLLSVPGRLEEHYDSLWSRLVAIYPD---IQVVHRLDMDTSGLML 81 Query: 153 VAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQE 212 +AK + A RSL +Q + + K Y A V G + + PL+ + +IV + Sbjct: 82 LAKHKEAERSLKKQFQYRLTHKVYYARVWGHPTNDNGEIDLPLICDWPNRPRQIV-CFDD 140 Query: 213 GKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTE 272 GKPS+T ++V +R ++VR P+TGR+HQ+RVH Q GHPI D+ Y + E Sbjct: 141 GKPSKTLYQVVKREERTSIVRLLPITGRSHQLRVHMQALGHPIVGDEFYSE-------GE 193 Query: 273 AGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLK 309 A +RL LHAA L F HP + + P D L+ Sbjct: 194 AFEFSDRLELHAAELSFYHPHSEALQCAFVPCDFYLE 230 >UniRef50_Q83G23 Pseudouridine synthase n=2 Tax=Tropheryma whipplei RepID=Q83G23_TROWT Length = 303 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 123/227 (54%), Gaps = 14/227 (6%) Query: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG-----LRALRPEARFLELVHRLDRDTSG 149 ++Y DD + V++KP+G A H G + G L A P+ R +VHRLD +TSG Sbjct: 78 VIYSDDDLFVIDKPAGVAAHASPGWCGPTVTGCLSGLLAACGPQDR-QGIVHRLDANTSG 136 Query: 150 VLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRV 209 ++++AK A +L R++ + K Y ALV+G + AP+ ++ L+ +R + Sbjct: 137 LMVLAKSDLAYHNLKAAFRDRAIHKRYKALVQGYPDPSSGVINAPIGRD-LKHRDRFC-I 194 Query: 210 SQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYG-DREFDR 268 G+ + T++ EE Y TL+ +P TGRTHQIRVH HP+ D +YG D F + Sbjct: 195 DYSGRDAVTQYSTEEVYPGFTLLSVAPKTGRTHQIRVHFSALRHPLVGDVKYGADPVFSQ 254 Query: 269 QLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 ++ L R +LHA L FTHP +G + E+ + E L+ L+ L Sbjct: 255 KVN-----LKRQWLHAYHLSFTHPVSGVFVEFESRIHEDLQESLRIL 296 >UniRef50_A9KNX9 Pseudouridine synthase n=21 Tax=Bacteria RepID=A9KNX9_CLOPH Length = 346 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 92/300 (30%), Positives = 148/300 (49%), Gaps = 23/300 (7%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 V+ + I +EAGQR+D FL L PKS Y++LRK + +N K+ + KL GD VR Sbjct: 18 VREITIVQNEAGQRLDKFLAKYLNKAPKSFFYKMLRKKNITLNGKKAEGAEKLIEGDIVR 77 Query: 68 IPPVRVAEREEEAVSPHLQKVA-----ALADVILYEDDHILVLNKPSGTAVHGGSGLSFG 122 + +AE E+ Q A A+ +LYED H++++NKP G Sbjct: 78 L---FLAEETIESFKESYQLDAKVNQRAVKLDVLYEDSHVVIINKPIGMLSQRAKESDVS 134 Query: 123 VIEGLRALRPEARFL----------ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGM 172 ++E L A E L + +RLDR+TSG+++ K L+ + +L+++ + Sbjct: 135 LVELLIAYLLEMGSLTKEELSTFKPSVCNRLDRNTSGIVIAGKSLLGLQEMSAKLQDRSL 194 Query: 173 QKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVS-QEGKPS--ETRFKVEERYAFA 229 K Y +V+G + + L K+ + RI +G+ S ET ++ Sbjct: 195 HKYYRCIVKGTMTKGAR-INGYLAKDEKTNKVRITTNDPNDGESSYIETEYQPILSKNGY 253 Query: 230 TLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKF 289 TL+ +TG+THQIR H GHPI D +YGD ++++ + GL+ LH+ L+F Sbjct: 254 TLLEVLLITGKTHQIRAHLSSIGHPIIGDTKYGDETLNKKM-QKQYGLSHQLLHSYRLEF 312 >UniRef50_B1H073 Ribosomal large subunit pseudouridine synthase C n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H073_UNCTG Length = 238 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 85/235 (36%), Positives = 129/235 (54%), Gaps = 20/235 (8%) Query: 95 ILYEDDHILVLNKPSGTAVHGGSGL--SFGVIEGLRALRPEARFLELVHRLDRDTSGVLL 152 I+Y+D++ILV+NKPSG V G + + ++E LR + L +VH +DRD SGVL+ Sbjct: 7 IIYQDENILVVNKPSGMFVIPGRNIYENKTLVEILRNQLKQK--LWVVHIIDRDASGVLV 64 Query: 153 VAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQE 212 AK R++ Q ++K Y+AL+ G + + ++ PL+ SG+ VR+ Sbjct: 65 FAKNPETHRNISVQFENSKIRKKYIALLSGVLEENEGTINKPLI----ISGKN-VRIDIT 119 Query: 213 GKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDRE------F 266 GK S T FKV E + TLV P+T + HQIR+H GHP+A D YG + F Sbjct: 120 GKESITDFKVLENFRSYTLVNALPLTVKRHQIRIHFWSLGHPLAIDGEYGTLDPIFLSSF 179 Query: 267 DR--QLTEAGTG---LNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLR 316 R ++ + T ++RL LHAAAL PG+GE EA + + + +++LR Sbjct: 180 KRGYKIKKGKTENPLISRLTLHAAALTLILPGSGEEKTFEAALAKDFEVAVKQLR 234 >UniRef50_P74346 Uncharacterized RNA pseudouridine synthase slr1629 n=19 Tax=Bacteria RepID=Y1629_SYNY3 Length = 327 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 104/339 (30%), Positives = 167/339 (49%), Gaps = 50/339 (14%) Query: 3 TETPSVKIVAITADEA-----GQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPE 57 T++ + + +TAD G R+D +L QL + +S +++ G+V+ N + + Sbjct: 10 TDSDPYQELLVTADGVAEGTLGVRLDKWLAEQLPELSRSRCQKLIESGQVQRNGLVCQDK 69 Query: 58 -YKLEAGDE--VRIP---PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGT 111 L+ GD V IP P+ V + + ILYED+ ++++NKP+G Sbjct: 70 NLILKTGDRLVVNIPELIPLDVVAQN-------------IPLDILYEDEQLIIINKPAGL 116 Query: 112 AVHGGSGLSFG-VIEGLRALRPEARFLE------LVHRLDRDTSGVLLVAKKRSALRSLH 164 VH G G G V+ L A P+ + +VHRLD+DT+G ++VAK AL +L Sbjct: 117 VVHPGPGHPDGTVVNALLAHCPDLAGIGGVQRPGIVHRLDKDTTGAMVVAKTELALHNLQ 176 Query: 165 EQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGER----IVRVSQEGKPSETRF 220 QL+EK ++ Y +V G + +V P+ ++ G+R IV V + G+ + T + Sbjct: 177 VQLKEKTARRLYWGIVYGSPKEIQGTVNLPVGRH---PGDRQKMGIVPVEKGGREAVTHW 233 Query: 221 KVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGT---GL 277 ++ ER + + TGRTHQIRVH++ GHP+ D+ Y T G+ L Sbjct: 234 RLLERIGNHSWLEFQLETGRTHQIRVHSKQMGHPLVGDNLY---------TSPGSVNVNL 284 Query: 278 NRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLR 316 LHA L HP +GE++ APM ++ L LR Sbjct: 285 PGQALHAHQLSLIHPVSGEIITAIAPMPAHFEKLLVYLR 323 >UniRef50_B2A2J2 Pseudouridine synthase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2J2_NATTJ Length = 328 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 91/319 (28%), Positives = 158/319 (49%), Gaps = 41/319 (12%) Query: 17 EAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAER 76 + G R+D +L Q++ + +S ++ V VN +K Y + +GD V++ + + Sbjct: 22 DEGLRLDLYLSEQIEDLSRSKAKMLINNNSVMVNDNWVKASYSITSGDVVKVDTQLI--Q 79 Query: 77 EEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARF 136 E + P ++ I+YED+++LV+NKP VH G+G + + AL + Sbjct: 80 SEITLIPQ-----SIPLDIVYEDEYLLVVNKPRNMVVHPGAGNYRDTM--VNALLYHCQN 132 Query: 137 LE---------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 L +VHRLD+DTSG+L+VAK+ L E+++ + + + YLALV G + Sbjct: 133 LSDGTSYERPGIVHRLDKDTSGLLVVAKQNETHDILSEEIKNRRVARTYLALVIGDFSKK 192 Query: 188 VKSVQAPLLKNILQSGERIVRVSQEGKPSETR------FKVEERYAFATLVRCSPVTGRT 241 ++ P+ ++ + + V GK + T+ F+ E+ ++ ++CS TGRT Sbjct: 193 KATIDLPIGRD--PRNRKKMAVVHGGKRAITKVEMLRSFQNPEKISY---LKCSLETGRT 247 Query: 242 HQIRVHTQYAGHPIAFDDRY-----GDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGE 296 HQIRVH + G+P+ D Y + + D+ LT LH+ +L FTHP + Sbjct: 248 HQIRVHLSHLGYPLLGDPVYRGKTGKNVDIDKNLTGQA-------LHSFSLAFTHPVFKK 300 Query: 297 VMRIEAPMDEGLKRCLQKL 315 M AP+ + + KL Sbjct: 301 TMVFRAPLPSDMMNLISKL 319 >UniRef50_A6DUC9 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DUC9_9BACT Length = 323 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 95/313 (30%), Positives = 149/313 (47%), Gaps = 32/313 (10%) Query: 20 QRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEA----GDEV--RIPPVRV 73 QR+D ++ QL ++ + + L+ G + + K ++ GD V ++P Sbjct: 20 QRLDRYISQQLPEYSRTFLQKSLKDGAFELVRSGAKINARMSENVIEGDFVHYKMP---- 75 Query: 74 AEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI--------- 124 E +E + P ++ I+YEDD ILV+NKP+G VH G+G G + Sbjct: 76 EEADESTLLPEDIELD-----IIYEDDDILVVNKPAGMVVHPGAGNYTGTLVNALLGRDL 130 Query: 125 EGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQW 184 + A+ + +VHRLD++TSGV++VAK L L + ++K Y+AL RG Sbjct: 131 DTFSAMDDGSSRPGIVHRLDKETSGVIIVAKSAKNLDKLSRSFARRDVEKYYVALCRGTI 190 Query: 185 QSHVKSVQAPL--LKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 + ++ + + ++ Q E S GK + + +KV ATLV+ TGRTH Sbjct: 191 RVGRDTITSHIGRSRSNRQKMEN-TNDSNRGKEAISHYKVLADNNGATLVKLKIDTGRTH 249 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH HP+ D YG R D + + +R LHA + HPGT E+M A Sbjct: 250 QIRVHMSGINHPVVGDKLYGVRRLDEKESP-----DRHILHAWRTRIIHPGTQEIMTFTA 304 Query: 303 PMDEGLKRCLQKL 315 P+ + K K Sbjct: 305 PLHDDFKSVCDKF 317 >UniRef50_C4PLV8 Pseudouridine synthase n=13 Tax=Chlamydiaceae RepID=C4PLV8_CHLTZ Length = 274 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 95/288 (32%), Positives = 143/288 (49%), Gaps = 48/288 (16%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPE-YKLEAGDEVRIPPVRVAEREEE 79 R+ +FLRT L +PK I +R RVN + + E YKL+ GD RV+ + E Sbjct: 13 RLSSFLRTSLPHLPKKTILESVRYHGCRVNGRIERFESYKLQPGD-------RVSLQIIE 65 Query: 80 AVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLEL 139 SP L L+ED+H+ + NKP+ S + L + L Sbjct: 66 HSSPQL----------LWEDEHLCIYNKPAKQT-------SEDLAHQLN--------VHL 100 Query: 140 VHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH---VKSVQAPLL 196 VHRLDRDTSG +L AK A + + + + K Y+ALV GQ + + + AP Sbjct: 101 VHRLDRDTSGCILFAKHAKASSLITQLFKNPEIDKRYIALVFGQPRQESGIITTYTAPCY 160 Query: 197 KNILQSGERIVRVSQE--GKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHP 254 + ++G + + + GK + T++++ RY TL+ C PVTGRTHQIR+H + GHP Sbjct: 161 R---RTGAVLFGNTDQNSGKITITKWEILTRYPKYTLLLCRPVTGRTHQIRLHMKTIGHP 217 Query: 255 IAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 I D YG++E + + R LHAA+L F P + E + + + Sbjct: 218 IVGDVDYGNQEQPKNVV-------RTLLHAASLAFISPFSNEKIEVSS 258 >UniRef50_C4XSN0 Ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XSN0_DESMR Length = 554 Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 101/315 (32%), Positives = 156/315 (49%), Gaps = 26/315 (8%) Query: 16 DEAGQRIDNFLRTQLKG--VPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPVR 72 D AG R+D F +L + ++ + + G V+ + KP KL G+ + + R Sbjct: 22 DAAGTRLDAFWSARLASEDISRAKVRAAIEAGLALVDGEICRKPGLKLRGGEALTL---R 78 Query: 73 VAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGLRALR 131 + E EA + + +LY D +LVLNKP+G +H S G ++ L Sbjct: 79 LPETPSEAKAEDGELK------LLYLDGDVLVLNKPAGLTIHPASSQPDGTLVNRLLHHF 132 Query: 132 PEARFLE-----LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 P+ R + +VHRLD+DTSG+LLVA+ SA +L E+ + K YLALV G+ + Sbjct: 133 PDMRAMAGDRPGIVHRLDKDTSGLLLVAQTESARLALAADFAERRVAKTYLALVHGRPER 192 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY--AFATLVRCSPVTGRTHQI 244 ++ P+ ++ + ++ V++ G+ +++ +K+ A+L+ + TGRTHQI Sbjct: 193 SDGVIELPVGRDP-KHPTKMAVVAKGGREAKSSWKLAWTAPDGTASLLEVAIATGRTHQI 251 Query: 245 RVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRL----FLHAAALKFTHPGTGEVMRI 300 RVH GHPI D YG R+ T G + RL LHA L F+HPGTGE + Sbjct: 252 RVHMAAMGHPIVGDAVYGARQHS-DWTRRGGAMARLAKRQMLHAWKLAFSHPGTGEELSF 310 Query: 301 EAPMDEGLKRCLQKL 315 P R L L Sbjct: 311 CQPPPADFWRLLLML 325 >UniRef50_C3WCY4 Pseudouridine synthase n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WCY4_FUSMR Length = 292 Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 82/248 (33%), Positives = 136/248 (54%), Gaps = 11/248 (4%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPV---RVAERE 77 R+D FLR +L + + I++ +R G+++VN K+ K Y+L+ D V++ V + ++ Sbjct: 13 RLDKFLRKKLPDMALTEIFKCIRVGKIKVNGKKSKENYRLQLNDVVKLFFVVESKECDKN 72 Query: 78 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL 137 + +K + I+YEDD +L+LNK + +H GSG +GV E L+ F Sbjct: 73 NNINKINSEKFEKIKKYIVYEDDRVLILNKKANMVMHKGSGHEYGVSEILKEYLNNPNF- 131 Query: 138 ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLK 197 V+R+D+ TSG+++ AK R L E++RE+ + K Y LV G+ + +++ L K Sbjct: 132 NFVNRIDKATSGLVVGAKSLVVTRELSEEIRERKVDKKYYILVEGKVKRREFQIKSYLKK 191 Query: 198 NILQSGERIVRVSQ--EG-KPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHP 254 +++V + Q EG K S + FKV E TL+ + +GRTHQ+RV G+P Sbjct: 192 ----LEDKVVELEQYEEGAKESLSFFKVVEYGKNCTLLEGTLGSGRTHQLRVQLASMGNP 247 Query: 255 IAFDDRYG 262 I D +YG Sbjct: 248 IIGDSKYG 255 >UniRef50_D1RB31 Pseudouridine synthase n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RB31_9CHLA Length = 319 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 95/314 (30%), Positives = 151/314 (48%), Gaps = 39/314 (12%) Query: 17 EAGQRIDNFLRTQLKGVPKSMIYRIL-RKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAE 75 EAG R+D L + K +++L KG V +N + +K +K GD+V + Sbjct: 18 EAGIRLDKVLADRYKSNGSRTYFQMLIEKGLVLLNGEPVKKRFKPNVGDDVEL------- 70 Query: 76 REEEAVSPHLQKVAALADV-ILYEDDHILVLNKPSGTAVHGGSGLSFGVI---------- 124 A +P + + + ILYED+H+L++NKP G VH G G Sbjct: 71 --FFAAAPEIDLIPEQIPLNILYEDEHLLIINKPVGMVVHPAPGNWTGTFVNALLYHCGY 128 Query: 125 ----EGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 + ++RP +VHRLD++TSGVL+ AK S + L E + + K+Y A+ Sbjct: 129 SLSDASVDSIRPG-----IVHRLDKETSGVLVAAKTLSVQQKLMELFAARQVYKEYWAIC 183 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 G + + P+ ++ + + VR ++GK + T + E L + TGR Sbjct: 184 LGNPGN--CELNWPIGRHPIHRKQMTVR--EDGKEALTFCETLEVGNEICLAKLILSTGR 239 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH ++ GHPI D YG ++ + + R LHA L F HP T + + + Sbjct: 240 THQIRVHLKHKGHPILGDSIYGSKQVNMRYRA-----ERQMLHARKLAFIHPITQQKIEV 294 Query: 301 EAPMDEGLKRCLQK 314 EAP+ ++ CL+K Sbjct: 295 EAPLPADMEECLRK 308 >UniRef50_B0PEI9 Pseudouridine synthase n=5 Tax=Bacteria RepID=B0PEI9_9FIRM Length = 338 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 89/292 (30%), Positives = 148/292 (50%), Gaps = 25/292 (8%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVR 72 I ++AGQR+D FL + +P+SM+Y+ +R +++N KR + +L GD++ + Sbjct: 23 INGNDAGQRVDKFLTKAVPLLPQSMLYKAIRTKRIKLNGKRCEISTRLCTGDQLTLYLND 82 Query: 73 VAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-------- 124 + L+ AA+ I+YED++IL++NKP+G VH S + Sbjct: 83 SFFDSRDGAFSFLRSPAAID--IIYEDENILLVNKPAGLVVHEDEHQSSDTLINRIQHHL 140 Query: 125 --EGLRALRPEARFL-ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 G+ E F L +R+DR+T+G+++ AK +ALR L+E+++ + +QK YL +V Sbjct: 141 YNCGVYNPAEENSFAPALCNRIDRNTAGIVIAAKNAAALRILNEKIKARELQKLYLCIVH 200 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQ----EGKPSETRFKVEERYAFATLVRCSPV 237 G +++A L K+ + V V +G+ T ++V + +L+ + Sbjct: 201 GTMPKESDTLKAFLRKD---ARTNTVAVYDHPIPDGRTILTHYRVVAQKDRLSLLEIDLL 257 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKF 289 TGRTHQIR H + GHP+ D +YG R TGL L A L F Sbjct: 258 TGRTHQIRAHLAHIGHPLLGDAKYG-----RNRDNHKTGLKHQALCAYKLTF 304 >UniRef50_B6BNM7 Ribosomal large subunit pseudouridine synthase, RluA family n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BNM7_9PROT Length = 325 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 100/313 (31%), Positives = 159/313 (50%), Gaps = 42/313 (13%) Query: 20 QRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPVRVAEREE 78 +R+D FL +++ G +S I +++ V V++K + +P KL++G +++ E E Sbjct: 13 ERLDIFLASEI-GQTRSQIASLIKHKCVFVDEKLVTRPGVKLKSGQNIKV------EFPE 65 Query: 79 EAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI------EGLR--AL 130 SP L + ILYEDD +LV+NKPSG VH + + +G+R + Sbjct: 66 AKESPALDIDFNVE--ILYEDDDVLVINKPSGVTVHPAPSVKEATLVDWLKHKGIRLSNI 123 Query: 131 RPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKS 190 E R +VHRLD+ TSG ++VAK A L EQL++K M + YLA++ + + + Sbjct: 124 SGEERH-GIVHRLDKGTSGTMVVAKNNEAHEFLSEQLQDKSMGRYYLAVLNPPLKDEITT 182 Query: 191 VQAPLLKNILQSGERIVRVSQ----EGKPSETRFKV-----EERYAFATLVRCSPVTGRT 241 ++ +NI +S ++++ + K ++T FKV +E+ F V C TGRT Sbjct: 183 IE----QNIGRSAHNRLKMTCTDAGKSKYAKTMFKVLSLSNDEKQQF---VACKLFTGRT 235 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVH + I D Y L+ R+ LHA + F HP + E + Sbjct: 236 HQIRVHLESINRHIIGDHIYA-------LSPKAEKSERILLHAYMIYFVHPTSKEKLTFV 288 Query: 302 APMDEGLKRCLQK 314 AP+DE +K L K Sbjct: 289 APLDETMKDYLDK 301 >UniRef50_Q8K9E9 Ribosomal large subunit pseudouridine synthase D n=4 Tax=Buchnera aphidicola RepID=RLUD_BUCAP Length = 315 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 92/313 (29%), Positives = 155/313 (49%), Gaps = 28/313 (8%) Query: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKK-RIKPEYKLEAGDEVRIPPVRVAER 76 +G+R+D L +S + + + V +N K +P+ K+ G+++ I Sbjct: 16 SGKRLDQILSKLFMQYSRSCLKKWIIMNNVYINGKIENQPDKKILGGEKITI------YS 69 Query: 77 EEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARF 136 +E + +L + AL + YED +IL++NKP G VH G+G G I L AL Sbjct: 70 TDEKLPINLPQNIALNTI--YEDSNILIINKPPGLVVHPGAGNQDGTI--LNALLYRYTN 125 Query: 137 LE------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKS 190 + ++HRLD+DTSG++++AK + L L+++ + + Y +++G S Sbjct: 126 ISSIPRCGIIHRLDKDTSGLMVIAKTIFSYNKLVTLLKKRKIIRKYQGIIKGNMISG-GI 184 Query: 191 VQAPLLKNILQSGERIVRVSQE-GKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQ 249 V P++++ + RI + GK S T +K+ R+ F T V TGRTHQIRVH Sbjct: 185 VNYPIMRHPFK---RICMTTDSLGKKSITHYKIINRFKFHTHVSFRLETGRTHQIRVHML 241 Query: 250 YAGHPIAFDDRYGDREFDRQLTEAGTGLNRLF------LHAAALKFTHPGTGEVMRIEAP 303 + G+P+ D YG ++ + + R F LHA ++F HP T +VM A Sbjct: 242 HIGYPLLGDPLYGGIDYGCNYFQENRNIYRKFNLFRQALHADYIEFIHPFTQKVMSWSAS 301 Query: 304 MDEGLKRCLQKLR 316 + + +K L L+ Sbjct: 302 LPQDMKDILLYLK 314 >UniRef50_Q63E77 Pseudouridine synthase n=73 Tax=Bacillaceae RepID=Q63E77_BACCZ Length = 307 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 93/313 (29%), Positives = 158/313 (50%), Gaps = 28/313 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + + A G I++ L+ + + +PK +++++ + V VN ++ + L+ GD+++ Sbjct: 12 MTVPAKWNGISIESLLKIEWE-IPKKLLHQLRMEKGVTVNGEQRRWNELLKEGDKLQ--- 67 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 V + EE V P ++ ++YEDDH+L++NKP H G + L A Sbjct: 68 VHMFMEEEYDVEPEYGELH-----VVYEDDHVLIVNKPEKMDTHPSEKGGMGTLANLVAF 122 Query: 131 RPEARFLEL----VHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 + + LE +HRLD+DT+G ++ AK R A + L E+ +++ Y ALV G+ + Sbjct: 123 HFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAGAIMDRLLMERKIKRTYAALVEGKVKK 182 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA--FATLVRCSPVTGRTHQI 244 ++ A + ++ + R RVS +G + T +KVEE + TLV TGRTHQI Sbjct: 183 KQGTIDAAIGRDRHHATRR--RVSPKGDQAITYYKVEEYFKKQNVTLVTLQLETGRTHQI 240 Query: 245 RVHTQYAGHPIAFDDRYGDREFDRQLTEAGTG-LNRLFLHAAALKFTHPGTGEVMRIEAP 303 RVH Y G+P+ D YG GT ++R LHA + F HP T E + ++ P Sbjct: 241 RVHMSYNGNPLVGDVLYG----------GGTKYMSRQALHAMKINFLHPITKEEIEVDVP 290 Query: 304 MDEGLKRCLQKLR 316 L ++ + Sbjct: 291 FPTKLNDTMKAFQ 303 >UniRef50_D1AMK0 Pseudouridine synthase, RluA family n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AMK0_SEBTE Length = 285 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 88/265 (33%), Positives = 142/265 (53%), Gaps = 22/265 (8%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 I+ + G R+D FLR +LK + I+ +RKG+V++N K+ K Y+L GD + I Sbjct: 2 IIKCDENMEGVRLDRFLRKKLKDTALNTIFEYIRKGKVKINGKKKKENYRLVLGDVIEIK 61 Query: 70 PVRVAEREEEAVSPHLQKVAALAD----VILYEDDHILVLNKPSGTAVHGGSGLSFGVIE 125 + +E E+ H + D ++ +EDD L++NKP G AVH G+G +G+ E Sbjct: 62 SLEESENTEK---KHYSSLRIDKDRYMKMVFFEDDDCLIINKPGGVAVHKGTGNQYGLAE 118 Query: 126 GLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 +++ L +R+D++T G+LL AK LR L E++R ++K Y+A+V G Sbjct: 119 VYKSIYKNEN-LNFANRIDKETKGLLLGAKNLKFLRYLTEKIRNNELEKRYIAVVSG--- 174 Query: 186 SHVKSVQAPLLKNILQSGERIVRVS--QEGKPSETRFK----VEERYAFATLVRCSPVTG 239 + + + N L++ E V VS + GK ++ FK ++ +Y T++ +TG Sbjct: 175 --IITEDEFTIDNFLETKENKVVVSDKENGKAAKAVFKKIKTIKNKY---TVLEVELITG 229 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDR 264 R HQIRV G PIA D +YG R Sbjct: 230 RKHQIRVQLADMGFPIAGDKKYGSR 254 >UniRef50_D1VS73 Pseudouridine synthase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VS73_9FIRM Length = 295 Score = 123 bits (309), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 89/317 (28%), Positives = 158/317 (49%), Gaps = 40/317 (12%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVR 72 + + GQR+D +L +L + +S I ++ +V VNKK +K YKL D + + + Sbjct: 6 VDKENFGQRLDVYL-AKLVDLSRSQIKNLIDNEKVLVNKKNVKAGYKLSEDDVISLEYPK 64 Query: 73 VAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-------- 124 + E + + ++YED++I V++KP VH G+G S G + Sbjct: 65 DNKPFAEKIDFN----------VIYEDEYIAVISKPQDLVVHIGAGNSSGTLVNGLLYKF 114 Query: 125 ----EGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 L LRP +VHRLD++TSG++++AK A +L +Q + ++K YLA+V Sbjct: 115 KNQLSDLDPLRPG-----IVHRLDKNTSGLMIIAKNNQAHINLVDQFKNSQIKKYYLAIV 169 Query: 181 RGQW-QSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTG 239 G+ +S + + P+ +N +++ V + K + T++K + + +L+ + +TG Sbjct: 170 HGKTPESGI--IAEPIGRN-PNDRKKMAVVYKNSKQAITKYKKLKEFQEYSLLNINLLTG 226 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RTHQIRVH Y G+P+ D YG + +++ LH+ L F HP T + M Sbjct: 227 RTHQIRVHMAYIGYPVLGDIIYGRKN--------SLKIDKQMLHSYKLIFNHPITNQKME 278 Query: 300 IEAPMDEGLKRCLQKLR 316 K+ + K++ Sbjct: 279 FTDEFPIRFKKFIDKIK 295 >UniRef50_D1Y3Y9 Pseudouridine synthase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3Y9_9BACT Length = 345 Score = 123 bits (309), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 157/302 (51%), Gaps = 24/302 (7%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNK-KRIKPEYKLEAGDEVRIP 69 +A+ +++G R+D FL +L + +S ++ G V + K+I+P +K++ G R+ Sbjct: 42 LAVPEEDSGARLDLFLAGELS-LSRSRARSLIDGGAVSSGQVKKIRPAFKIQPGQIYRV- 99 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGLR 128 E +P + ++YEDD ++V+NKP+G VH G+G G ++ GL Sbjct: 100 -------EIPEAAPAEIAAQDMPFDVVYEDDDVIVVNKPAGVVVHPGAGRPDGTLVNGLM 152 Query: 129 ALRPEARFLE------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 PE + +VHRLD TSG+++VA+ +A R L E + + K+YL L G Sbjct: 153 FRYPEIGRIGDSVRPGIVHRLDVGTSGLMVVARSDAAFRGLTEAFQAHEVLKEYLGLGVG 212 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 ++ +V AP+ ++ + VS +G+ + T +KV A L+R TGRTH Sbjct: 213 ALKAPEGTVDAPIGRD--PRNRLKMCVSWDGRDAVTDYKVLWTRARCNLIRVRLHTGRTH 270 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH + G + D YG ++ + + + +R+FLH+ L F HP +GE + A Sbjct: 271 QIRVHMRALGCSLDGDTLYGPKDPAQHILK-----DRVFLHSWRLGFRHPVSGERLEFRA 325 Query: 303 PM 304 P+ Sbjct: 326 PL 327 >UniRef50_A6GHA7 Pseudouridine synthase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GHA7_9DELT Length = 324 Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 105/323 (32%), Positives = 160/323 (49%), Gaps = 39/323 (12%) Query: 7 SVKIVAITADEAGQR-----IDNFLRTQL-KGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 SV +V + D GQR +D F R++ + + +S + R GEVR+ +++K ++L Sbjct: 2 SVTLV-LGEDAIGQRLDKALVDAFARSEAHESLSRSQLARAFAAGEVRIAGRKVKASFRL 60 Query: 61 EAGD---EVRIP-PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGG 116 EA E+R+P P +A EA+ +++ED +LVL+KP+G VH G Sbjct: 61 EAAGVCVELRVPAPAPLAHARPEAIP----------LTVVHEDASLLVLDKPAGMVVHAG 110 Query: 117 SGLSFGVIEG--LRALRPEARFLEL-----------VHRLDRDTSGVLLVAKKRSALRSL 163 G G + L L+ A L + VHRLD+DTSG+++ A+ A L Sbjct: 111 PGHDSGTLVNAVLHHLQVHADALPVLPGNGPERPGVVHRLDKDTSGLIVFARGLRAQTVL 170 Query: 164 HEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVE 223 EQ R+ + + YL +V G+ + ++ ++ + R Q + + T +V Sbjct: 171 AEQFRDHSIDRAYLGVVLGRPSFERRRLETTHGRD--PADRRRFAPDQGTRRAVTTMEVL 228 Query: 224 ERY-AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFL 282 A A L R + TGRTHQIR+H + GHPI D YG R L GL R L Sbjct: 229 RPLGAHAALARFTLETGRTHQIRMHARMVGHPIFADPLYGRRPKHPALRRLADGLGRHAL 288 Query: 283 HAAALKFTHP-GTGEVMRIEAPM 304 HAA L F HP G+G ++ +EAP+ Sbjct: 289 HAALLGFAHPDGSGRLV-LEAPL 310 >UniRef50_C1ZB48 Pseudouridine synthase, RluA family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZB48_PLALI Length = 325 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 99/327 (30%), Positives = 149/327 (45%), Gaps = 30/327 (9%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 K V + AG R+D+FL + I R++ G V ++ + ++ G +V I Sbjct: 6 KTVTVEKYLAGVRVDSFLVKHFRSYTSWRILRMVAAGLVTIDGQVAATTQRVHPGQQVTI 65 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL- 127 ++ E + V P + IL+EDD +LV+NKP+G H + G + Sbjct: 66 ---QLTEPPDLFVPPEPTPLE-----ILFEDDSLLVINKPAGLIAHPTGEIPDGTLINAV 117 Query: 128 ------RALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 ++ P +VHRLDRDTSG + + K+ + R L Q + + K YLALV Sbjct: 118 QHYLDKQSTHPGLERPGIVHRLDRDTSGAMAICKEHLSHRLLSIQFQLGRISKSYLALVE 177 Query: 182 G-----QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSP 236 G Q + +AP + L S + E + S+T +V ER+ TLV P Sbjct: 178 GVLTDDQLVIDLPIGRAPGCSSALMSCRA---DALEAQASKTSLRVVERFPQHTLVEAKP 234 Query: 237 VTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQL-------TEAGTGLNRLFLHAAALKF 289 TGR HQIR+H G PI D+ Y R L + +NR LHAA L F Sbjct: 235 RTGRMHQIRIHLATIGFPIVGDEFYLKGGEIRPLVWPESERVQVSLLINRQALHAACLSF 294 Query: 290 THPGTGEVMRIEAPMDEGLKRCLQKLR 316 HP T E +AP+ + L++ ++ R Sbjct: 295 AHPLTNEWQDFQAPLPDDLRQAIELAR 321 >UniRef50_C8WWB4 Pseudouridine synthase n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWB4_ALIAD Length = 303 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 104/319 (32%), Positives = 155/319 (48%), Gaps = 40/319 (12%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + I + G+ + +LR L G+P S +Y+ +R G V+VN KR K + +L GD V + Sbjct: 4 IIIGPSDDGKPVHKWLRLLLPGLPLSGVYKSIRTGRVKVNGKRAKQDTRLHEGDIVHL-- 61 Query: 71 VRVAEREEEAVSPHLQKVAALADV-----ILYEDDHILVLNKPSGTAVHGGSG---LSFG 122 +E+ S H VA V ILYEDD I+ +NKP G H G S Sbjct: 62 ---YFSDEDYASLHAHPVAKYQGVSRAIDILYEDDEIVAVNKPVGVLTHPADGEYKTSLA 118 Query: 123 V-IEGL---RALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLA 178 +E R R A VHRLDR+TSGV++ AK A ++ + ++K+YLA Sbjct: 119 AQVEAYVYDRGAREGAFRAAPVHRLDRNTSGVVVFAKTARAAKAWADAFHRGEVEKEYLA 178 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVT 238 +V G+W S + + ++ + G V GKPSET ++V +LVR +T Sbjct: 179 IVEGEW-----SGRGRVAVDVRREGNVTRVVDDSGKPSETAYEVVASSRGTSLVRLHLLT 233 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM 298 GRTHQIRVH + GHP+ D +YG R + +LHA +++ + Sbjct: 234 GRTHQIRVHMAHLGHPLLADRKYGARPIRGE---------SFYLHAHRVRWNQ------V 278 Query: 299 RIEAPMDEGLKRCLQKLRN 317 + AP+ + R +KLR Sbjct: 279 HVTAPLPD---RMTEKLRT 294 >UniRef50_B5JHH9 Pseudouridine synthase n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JHH9_9BACT Length = 324 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 102/320 (31%), Positives = 159/320 (49%), Gaps = 31/320 (9%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPE-YKLEAGDEVRIPPV 71 I AD G R+D ++ + +P + + G+V ++ + + + + AG + + Sbjct: 16 IGADLEGARLDKTVKQHFQ-LPWAKARAWIDTGKVFIDGNCVSDQAFAVAAGSRIELRMS 74 Query: 72 RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSG--TAVHGGSG----LSFGVIE 125 + +R E P + A I+Y D+HI+V+NK +G T H S L V + Sbjct: 75 QPKKRPE----PKIPDAA-----IVYFDEHIVVVNKAAGLMTVPHPESDETETLDRLVND 125 Query: 126 GLRALRPEARF----LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 LR P+A+ L +VHR+D+DTSG+++ A+ A R+L EQ R +++ YLA+V Sbjct: 126 YLRIRDPDAKTNRASLGVVHRIDKDTSGLVVFARTFLAKRALSEQFRAHSIERRYLAIVH 185 Query: 182 GQWQ-----SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSP 236 G+ + +H+ L+ G + G+ + T V ER A ATLV C Sbjct: 186 GELKAQSIRTHLVRETGDGLRGSAPKGATNSEGEELGRLAITHVDVVERLAGATLVSCRI 245 Query: 237 VTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGE 296 TGRTHQIR+H GHPI + Y R F+ +L A NR LHAA L F HPG+GE Sbjct: 246 ETGRTHQIRIHLSEIGHPIVGEKVY-IRGFEGELIPA----NRAMLHAAELGFIHPGSGE 300 Query: 297 VMRIEAPMDEGLKRCLQKLR 316 + + + +R + LR Sbjct: 301 AVSWQEEASKDFQRIYKSLR 320 >UniRef50_D0LYX0 Pseudouridine synthase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LYX0_HALO1 Length = 345 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 104/325 (32%), Positives = 145/325 (44%), Gaps = 44/325 (13%) Query: 23 DNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEAVS 82 D + + + + G VRVN +++K + AG E+ + R+ +EE V Sbjct: 28 DKLVGEHFPAASRRRVTALFADGRVRVNGRKVKKGAIVPAGAEIAL--TRLPVADEELVP 85 Query: 83 PHLQKVAALADVILYEDDHILVLNKPSGTAVHG-GSGLSFGVIEGLRALRPEA------- 134 Q L +LYEDD I V++KP+G H +G + L A PE Sbjct: 86 ---QANHELVLDLLYEDDAIAVVSKPAGLPSHPLRAGERDTLANALVAHYPECAAIGADP 142 Query: 135 RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAP 194 R L HRLD DTSGVL+ A+ + A +L ++K YLAL G S V Sbjct: 143 REAGLAHRLDIDTSGVLVAARTQKAWHALRAAFGSGAVEKHYLALTFGAPSSGEMDVA-- 200 Query: 195 LLKNILQSGERIVRV---------------SQEGKPSETRFKVEERYAFATLVRCSPVTG 239 ++Q G R V + P+ T +++E R+ A L+ C TG Sbjct: 201 ----LVQRGRRAHPVFRDDAGFGGFGGRGERGDALPARTTWRIERRFGPACLLLCRAHTG 256 Query: 240 RTHQIRVHTQYAGHPIAFDDRY---------GDREFDRQLTEAGTGLNRLFLHAAALKFT 290 R HQIRVH AG PI D Y +RE L+E R FLHA+A+ Sbjct: 257 RMHQIRVHLALAGAPIIGDSLYAPAPETLSAAEREDLAALSEHPEA-TRHFLHASAVTIP 315 Query: 291 HPGTGEVMRIEAPMDEGLKRCLQKL 315 HP TG +RIEAP+ EG + L +L Sbjct: 316 HPETGRALRIEAPLPEGRAQFLAEL 340 >UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_1758 n=3 Tax=Aquificaceae RepID=Y1758_AQUAE Length = 316 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 100/310 (32%), Positives = 149/310 (48%), Gaps = 28/310 (9%) Query: 20 QRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPVRVAEREE 78 +R+D FL +S I +++++G V VN + + KP KL G+ V + V E E Sbjct: 16 ERLDKFLARAYPDFSRSYIKKLVKEGLVYVNGEEVRKPSRKLREGERVIL---HVPEPEP 72 Query: 79 EAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLE 138 V P + I+YED+ I V+ KP G VH G + G + + AL + L Sbjct: 73 LDVKP-----ENIPINIIYEDEDIAVVEKPCGLVVHPSPGYTSGTL--VNALLYHIKDLS 125 Query: 139 ---------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVK 189 +VHRLD++T+GV+++AK +A R+L Q +E+ +K Y LV+G + Sbjct: 126 SIGGVERPGIVHRLDKETAGVMVIAKNNTAHRNLVRQFQERKTEKFYKVLVKGLVKKDYG 185 Query: 190 SVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF--ATLVRCSPVTGRTHQIRVH 247 ++ P+ ++ + VR +EGK + T + V +RY TL++ TGRTHQIRVH Sbjct: 186 AIDTPIARHPVDRKRFWVR--KEGKEALTEYWVLKRYEKYEITLLKVKIHTGRTHQIRVH 243 Query: 248 TQYAGHPIAFDDRYG--DREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMD 305 GHP+ D YG ++L N L A L F HP GE M E Sbjct: 244 FASIGHPVLGDRTYGFKSSSVPKELLSLMGECNMLI--AYHLGFYHPTKGEWMVFEIEEP 301 Query: 306 EGLKRCLQKL 315 E K L Sbjct: 302 ETFKSVYSWL 311 >UniRef50_C9M7B4 Pseudouridine synthase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M7B4_9BACT Length = 301 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 98/321 (30%), Positives = 155/321 (48%), Gaps = 40/321 (12%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + + +AG R+D +L QL+ + +S + R++ G V ++K + +GD Sbjct: 6 IVVEPSDAGNRLDLYLSGQLE-LSRSAVGRLISGGLVS-GVGKVKASRVVVSGDWF---D 60 Query: 71 VRVAEREEEAVSPHLQKVAALADV---ILYEDDHILVLNKPSGTAVHGGSGL-------- 119 V + E EE+V P DV +Y DD + V+ K +G AVH G+G Sbjct: 61 VSMPEPSEESVVPQ--------DVPFRTVYADDWLAVVEKLAGIAVHPGAGRKDGTLVNG 112 Query: 120 ---SFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDY 176 +FG + G LRP +VHRLD TSG+++VA+ A L + ++ ++K Y Sbjct: 113 LVKTFGPLPGA-GLRPG-----IVHRLDIGTSGLMVVARTPQAYLFLQREFSQRRVEKTY 166 Query: 177 LALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSP 236 LALV G + ++ P+ ++ + VR +G+ + TR++ +L C Sbjct: 167 LALVHGWIPASQGTLDGPIGRSRYDRLKMAVRA--DGRRAVTRYRTLWTRGSLSLTACRI 224 Query: 237 VTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGE 296 TGRTHQIRVH G + D YG ++ R E R+FLHA L F HP G Sbjct: 225 ETGRTHQIRVHMASIGCYLDGDRLYGPKDVSRHFLE-----GRVFLHAWRLSFHHPSDGR 279 Query: 297 VMRIEAPMDEGLKRCLQKLRN 317 M +P+ + L L+K+R+ Sbjct: 280 TMNFRSPLPDELIGVLKKIRS 300 >UniRef50_D0KVM5 Pseudouridine synthase n=11 Tax=Proteobacteria RepID=D0KVM5_HALNC Length = 340 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 106/321 (33%), Positives = 157/321 (48%), Gaps = 30/321 (9%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVR 72 I + AGQR+D L +S I ++ GE+ ++ + +P + G+ V + Sbjct: 9 IPPECAGQRLDQALAKCWPDYSRSRIQDWIKSGEILLDGEVARPRATVLGGESVEL---- 64 Query: 73 VAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGLRALR 131 +AE EEAV+ Q + I+YEDD I+VLNK VH +G G ++ L Sbjct: 65 LAE-IEEAVAAVPQDIPL---DIIYEDDAIIVLNKSPDIVVHPAAGNPDGTLVNALLFHD 120 Query: 132 PEARFLE---LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHV 188 P + +VHRLD+ TSGV++VAK +A + L E L + ++++Y +V G HV Sbjct: 121 PSLVSVPRAGVVHRLDKQTSGVMVVAKTLAAHKILVENLAARKIRREYDTVVMG----HV 176 Query: 189 ---KSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245 +V AP+ ++ + V + GK + T ++V + Y T +R TGRTHQIR Sbjct: 177 VAGGTVDAPIGRHPRDRQRQAV--TATGKRAVTHYRVLQHYGEQTWLRVQLETGRTHQIR 234 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGL-------NRLFLHAAALKFTHPGTGEVM 298 VH + HP+ D YG R R A T L R LHA L HP TG M Sbjct: 235 VHMAHIRHPVIGDPVYGGRP--RIPPRASTALIDVLRHFERQALHARYLTLAHPVTGTQM 292 Query: 299 RIEAPMDEGLKRCLQKLRNAR 319 R EAPM + ++ + L R Sbjct: 293 RFEAPMPDDMRELIALLTEYR 313 >UniRef50_Q2LVB7 Pseudouridine synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LVB7_SYNAS Length = 324 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 98/300 (32%), Positives = 148/300 (49%), Gaps = 28/300 (9%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRIPPV 71 IT ++ I+ FL Q ++ I ++LR G +R N K + +KL AGD V I Sbjct: 38 ITVNKPTTLIE-FLAEQYPDSSRTRIKKLLRHGNIRCNNKPVTLHSHKLSAGDVVEI--- 93 Query: 72 RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR 131 + A L +L+ED H++ + KP G A G + +AL+ Sbjct: 94 --------NTYGGIAAKAGLPFPVLFEDQHVIAVEKPVGIATFSADGSASVQWIVAQALK 145 Query: 132 PEAR---FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHV 188 +R VHRLD++ SGVLL AK + A+ + E+ +E +K Y ALV G+ +S Sbjct: 146 EHSRGKIHAFAVHRLDKEVSGVLLFAKSKMAMDHIKEKWKE--AEKRYYALVEGKPESPD 203 Query: 189 KSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHT 248 ++++ L+++ Q R S + K S T +++ ++ TL+ TGR +QIRVH Sbjct: 204 GTIESWLVEDHAQKVHS-TRESSKAKFSVTHYRIIKQVNQYTLLDVKLQTGRKNQIRVHL 262 Query: 249 QYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGL 308 G PIA D +YG A + R+ LHA L F HP TGE + IE+PM EG Sbjct: 263 SDIGCPIAGDRKYG---------AAADFVRRIRLHAYYLSFPHPVTGERISIESPMPEGF 313 >UniRef50_B7GQ28 Pseudouridine synthase, RluA family n=21 Tax=Bifidobacteriaceae RepID=B7GQ28_BIFLI Length = 320 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 96/286 (33%), Positives = 144/286 (50%), Gaps = 28/286 (9%) Query: 19 GQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREE 78 G+R D + L G+ +S ++ G+ RV + + L+AG+ V + E Sbjct: 13 GKRFDVAVAKML-GISRSKAADLVDSGQARVLGREVARSSTLQAGETVEF------DLAE 65 Query: 79 EAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLE 138 E P + A ++YEDD ++V++KP G A H G + + G +LR + Sbjct: 66 EQAGP---EPIATDMAVVYEDDDVIVVDKPVGVAAHASVGWTGPTVLG--SLRDRGVHIA 120 Query: 139 ---------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVK 189 +V RLD TSG++LV K A + Q E ++K Y ALV+G + + Sbjct: 121 SYGAAGREGIVSRLDVGTSGLMLVCKSDLAYTEMRRQFAEHEVKKTYHALVQGGLKENKA 180 Query: 190 SVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF-ATLVRCSPVTGRTHQIRVHT 248 +++AP+ + + S R V+ GKP+ T + V ER+ ATLV + TGRTHQIRVH Sbjct: 181 TIEAPIGRAKV-SDFRFC-VTPAGKPAVTHWDVLERFGHEATLVSVNLETGRTHQIRVHF 238 Query: 249 QYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGT 294 GHP+ D YG L+EA GL+R +LHA L+F HP T Sbjct: 239 SSIGHPLCGDPMYGANPV---LSEA-LGLDRQWLHAMKLEFRHPRT 280 >UniRef50_C6D874 Pseudouridine synthase, RluA family n=2 Tax=Paenibacillus RepID=C6D874_PAESJ Length = 332 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 118/225 (52%), Gaps = 15/225 (6%) Query: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFGVIE--GLRALRPEARFLEL--VHRLDRDTSGV 150 +LYEDD LVLNKP+G VH G ++ R L + L + +HRLD DTSG Sbjct: 114 VLYEDDFSLVLNKPAGMPVHESHSGQTGTLDEAAARWLLEQGDPLPVRHIHRLDDDTSGP 173 Query: 151 LLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVS 210 +L +K A L E +REK + + YLA+V+G+ + +V AP+ K+ S R RV+ Sbjct: 174 VLYSKNDLAQWVLDEAMREKRIDRRYLAVVQGKVKKSSGTVNAPIGKDRHHSSRR--RVT 231 Query: 211 QEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQL 270 G + T ++ ++ ATLVR TGRTHQIRVH + GHP+ D YG D +L Sbjct: 232 PGGDLAITHYETIRAFSDATLVRLQLETGRTHQIRVHMSHLGHPLLGDKLYGG---DTRL 288 Query: 271 TEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 L LH L F HP TGE++ A E L L KL Sbjct: 289 ------LQHQALHGERLLFPHPWTGELVEAAAAKPEWLVNLLDKL 327 >UniRef50_D1BAB3 Pseudouridine synthase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1BAB3_THEAS Length = 320 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 95/310 (30%), Positives = 152/310 (49%), Gaps = 30/310 (9%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVN-KKRIKPEYKLEAGDEV--RIP 69 + D G R+D L ++ GV +S +++++G V+V+ R+KP K+ G V ++P Sbjct: 24 VGEDGEGHRLDFVLSREI-GVSRSYASKLIKEGMVQVSWSPRVKPSLKVRVGGTVTAQLP 82 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGLR 128 P E E + V ++Y+D ++V++KP+G VH G G ++ GL Sbjct: 83 PSEELELEPQDVPFR----------VVYQDQDLVVVDKPAGLVVHPAPGHWRGTLVHGLL 132 Query: 129 ALRPEARFLE------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 P+ L +VHRLD TSG+++VA+ A+ L +++ + K YLA+ G Sbjct: 133 YRYPDLMELNGVKRPGIVHRLDATTSGLMVVARNGLAMEGLVRAFKDRRVGKVYLAMAAG 192 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 + SV P+ ++ + + G+ + TR++V +LV C TGRTH Sbjct: 193 TLRGE-GSVSLPIGRD--PDNRKRMACVPWGREALTRYRVIWSRGGYSLVACQIKTGRTH 249 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH + GHP+ D YG G L R+FLH+ L+F HP TG M Sbjct: 250 QIRVHMRSLGHPLVGDRIYGGP------CPEGFPLGRVFLHSWRLEFDHPRTGAPMSFIC 303 Query: 303 PMDEGLKRCL 312 P+ L R + Sbjct: 304 PLPPDLVRFI 313 >UniRef50_B5YKV0 Pseudouridine synthase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKV0_THEYD Length = 315 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 88/313 (28%), Positives = 162/313 (51%), Gaps = 22/313 (7%) Query: 15 ADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP-VRV 73 ADE G+R+D F+ +L + ++ + K V+VN YK++ D + + + Sbjct: 10 ADE-GKRLDIFISDKL-NISRAKAQEAIEKKFVKVNNYVKTKSYKIKFNDLIEVSDEFSL 67 Query: 74 AEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPE 133 E + P + ++Y+DD+++VL+KP+G V+ +G G + + AL Sbjct: 68 KLENSEKLIPQNIPIQ-----VIYKDDYLIVLSKPAGMVVYPCAGHPDGTL--MNALAYH 120 Query: 134 ARFLE---------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQW 184 + L +VHRLD+DTSGV++VA L E +++ ++K+YLALV GQ Sbjct: 121 VKKLANVGAPFRPGIVHRLDKDTSGVMVVALDDETYYKLVEAFKKREIKKEYLALVYGQL 180 Query: 185 QSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQI 244 + K + P+ + I + ++ S++ K + T ++V + + T ++ +TGRTHQI Sbjct: 181 RGSGK-ITTPVGRAIYDRKKMSIK-SKKAKEAITEWEVIKNFKNYTFLKVKILTGRTHQI 238 Query: 245 RVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPM 304 RVH GHP+ D YG + + ++ ++R LHA ++ HP T ++++ EA + Sbjct: 239 RVHFSSIGHPVIGDKTYGRKTY-IEIGNKKIPVSRQMLHAHKIELIHPITEKLLQFEASL 297 Query: 305 DEGLKRCLQKLRN 317 + ++ L L + Sbjct: 298 PDDIQYILNILED 310 >UniRef50_D1VRZ3 Pseudouridine synthase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VRZ3_9FIRM Length = 316 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 91/301 (30%), Positives = 150/301 (49%), Gaps = 40/301 (13%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR--I 68 V I +++ QR+D FL+ + P S IY+ LRK ++V+ K+ PE ++ G E+ I Sbjct: 4 VIIGPNDSDQRLDRFLKKYFEKAPLSFIYKNLRKKNIKVDGKKASPEDLIKEGQEISLFI 63 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG---------- 118 + + +++ ++ + QK ILYEDD+I ++ KP H Sbjct: 64 SDETIEKYKKDKLARNSQKFPQ----ILYEDDNICLMKKPLNMLTHNDKNFYQDNMVDRF 119 Query: 119 LSFGVIEGLRALRPEARFL-ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 + + + + + R E F + +RLDR+TSG+LL AK LR +++ ++E+ + K YL Sbjct: 120 IDYLIFKEEYSPREENTFRPSICNRLDRNTSGILLGAKNAETLREINKAIKERLVDKFYL 179 Query: 178 ALVRGQWQSHVKSVQAPLLKNIL--QSGERIVRVSQEGKPSETRFKVEERYAFATLVRCS 235 +V+G+ VQ P NI ++ + I+R S +GK S T+F +L++ Sbjct: 180 TIVKGK-------VQKPFEINIKLEKTDKNIMRKSSQGKDSLTKFFPLISNGEYSLLKVK 232 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRYG---DREFDRQLTEAGTGLNRLFLHAAALKFTHP 292 +TGRTHQIR + G I D +YG D+EF+ Q LH +KF Sbjct: 233 LITGRTHQIRASLKEKGLYILGDRKYGTGKDKEFNSQA-----------LHNYLIKFNLD 281 Query: 293 G 293 G Sbjct: 282 G 282 >UniRef50_B0VJ94 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJ94_9BACT Length = 351 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 99/334 (29%), Positives = 156/334 (46%), Gaps = 40/334 (11%) Query: 9 KIVAITADEAGQRIDNFLRTQLKG---VPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDE 65 K+ I + QR+D FL +LK ++ I ++ + + VN +K Y L+ GDE Sbjct: 11 KLKVIYTLQEMQRLDKFL-AELKIQELYSRTFIEHLIEEDRILVNLTPVKKSYLLKEGDE 69 Query: 66 VRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIE 125 V I + E E V P Q + DV+ YED+++ ++NK +G VH G FG E Sbjct: 70 VII---NLPEPEPMNVLP--QDIPL--DVV-YEDEYLAIINKKAGMIVHPG----FGNPE 117 Query: 126 GLRALRPEARFLE------------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQ 173 G RF E +VHRLDR TSG++++AK L + + ++ Sbjct: 118 GTLVNAILYRFGENLSSGKEFNRPGIVHRLDRGTSGLIIIAKNDLTHAKLSDMFARREIK 177 Query: 174 KDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVR 233 K Y A+ G + ++ L ++ R + V+ EG+ + T +K + + + LV Sbjct: 178 KTYFAITTGIPEPEKGEIETYLARS--NKNPRTICVTNEGRYALTHYKTIKTWHYFALVE 235 Query: 234 CSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAG----------TGLNRLFLH 283 +P TGR HQIRVH + +PI D Y R + + L L R LH Sbjct: 236 INPATGRMHQIRVHFAHIRYPILGDLLYNSRRYVQSLVPQNMKKKVTELLVNHLRRQALH 295 Query: 284 AAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 + L+F HP TG + + AP+ + ++ L L N Sbjct: 296 SWKLEFFHPITGYPISVSAPIPDDIQYTLNWLDN 329 >UniRef50_Q1MQF8 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q1MQF8_LAWIP Length = 321 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 87/279 (31%), Positives = 140/279 (50%), Gaps = 33/279 (11%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + ++++EAGQ++ FL +L VPKS+++R +R G+ R+N KR+ P + D++RIPP Sbjct: 10 IIVSSNEAGQKLFQFLTRRLT-VPKSILHRWIRTGQTRINGKRVTPFTIVNFKDKIRIPP 68 Query: 71 VRVAEREEEA----------VSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 ++++ +SP + ++ ++ KP+G AVHGG+G + Sbjct: 69 FAYEYKKKDLTTSLIHNQYDISPISSHTTSPLPPVIAHSPEFIIFYKPAGLAVHGGTGQT 128 Query: 121 FGVIEGLRALRPEARFLEL-VHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQ--KDYL 177 + L + F+ VHRLD+DTSG+LLVAK ++LR E Q K+YL Sbjct: 129 DSLAHRLSQHYAHSTFMPTPVHRLDKDTSGLLLVAKTYNSLRYFSELFASHSTQLTKEYL 188 Query: 178 ALVRG--QWQSHVKSVQAPLLKNIL---QSGERIVRV-SQEGKPSETR-------FKVEE 224 A V G W Q L++IL Q + R+ S + K +T + + Sbjct: 189 AWVVGICPW------TQPICLEDILTKKQKQDNYSRLNSYQNKLQQTSAQKASLTVRCIK 242 Query: 225 RYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGD 263 +Y +L+ TGRTHQIR+ G PI D +YG+ Sbjct: 243 QYKDKSLLLIKLHTGRTHQIRIQLSIHGFPIIGDKKYGN 281 >UniRef50_B0S0X9 Pseudouridine synthase n=2 Tax=Finegoldia magna RepID=B0S0X9_FINM2 Length = 321 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 89/325 (27%), Positives = 160/325 (49%), Gaps = 32/325 (9%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + I + QR+D FL + + K+ I +++R +++VNKKR +P+Y L+ D V I Sbjct: 4 INIDNSNSNQRVDRFLMKLMPKMSKNHIQKLIRTKKIKVNKKRTEPDYDLKIDDVVNIYL 63 Query: 71 V-RVAEREEEAVSPHLQKVAALADV---ILYEDDHILVLNKPSGTAVHGGSGLSFG--VI 124 V E+ ++ K+ D I+YEDD ++++NK +G H + +G ++ Sbjct: 64 YDEVIEKYQD------NKIYTADDFNLDIIYEDDDLILINKKTGVLSHAANPQDYGKNIV 117 Query: 125 EGL-------RALRP--EARFL-ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQK 174 + + +P + F LV+RLDR+TSG+++ AK +L+ ++ ++ + K Sbjct: 118 DMMVSYLIKTNQFKPTQNSTFTPALVNRLDRNTSGIVVGAKTYDSLKYFNDLFKKHEITK 177 Query: 175 DYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRC 234 Y +V G + +++ L K+ + + ++ GK S T+ + + +LV Sbjct: 178 IYETIVVGNLKD--QTIDLALEKD---NDKNKSVINSSGKKSMTKVWNVKNFGKYSLVNV 232 Query: 235 SPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHP-- 292 +TGRTHQIR H + HPI D +YG+RE ++ + LN LH+ L F Sbjct: 233 DLLTGRTHQIRAHLSHINHPIIGDIKYGNREVNKYF-KNKYDLNFQLLHSYKLVFPEKMG 291 Query: 293 --GTGEVMRIEAPMDEGLKRCLQKL 315 E M E+ D+ ++ L L Sbjct: 292 KYQKYESMVFESKRDDLFEKILNDL 316 >UniRef50_C6E472 Pseudouridine synthase n=4 Tax=Geobacter RepID=C6E472_GEOSM Length = 302 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 94/306 (30%), Positives = 141/306 (46%), Gaps = 37/306 (12%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVR 72 I A + +R+D+F+R L S + +++ G V+VN ++ L+ D+V + Sbjct: 6 IDAKDHCRRMDSFMRNLLPTAQFSYLKKLISSGHVKVNGSSVEAAQLLKYADQVTL---- 61 Query: 73 VAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS----FGVIEGLR 128 +E + L ++ D IL+ED I+ LNK G +VH + E L Sbjct: 62 ---KESSKTAAFLARLTPELD-ILFEDSWIISLNKAPGLSVHRTEDPDEVNLVDLAETLL 117 Query: 129 ALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHV 188 R L V+RLD+ TSG +++AK A + ++E+G+ K YLALV G+ Q Sbjct: 118 QKRDGVGRLRPVNRLDKGTSGAIILAKSAVAAGMFGKMVQEEGLGKLYLALVEGKLQKQ- 176 Query: 189 KSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHT 248 + APL +GK S+T + +L+ P+TGR HQIR H Sbjct: 177 GVIDAPL----------------DGKESQTSYLRLFHGGGVSLLAVYPITGRMHQIRQHF 220 Query: 249 QYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGL 308 + GHPI D RYG R TG LH+ HP TGE + I AP+ E L Sbjct: 221 KMIGHPILGDKRYGGRAL--------TGFTGHALHSFKTTLVHPATGEEVNIPAPLPEQL 272 Query: 309 KRCLQK 314 R + + Sbjct: 273 MRLVSR 278 >UniRef50_C3WHA9 Pseudouridine synthase n=4 Tax=Fusobacterium RepID=C3WHA9_9FUSO Length = 295 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/261 (30%), Positives = 135/261 (51%), Gaps = 14/261 (5%) Query: 10 IVAITADEAGQ--RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 ++ DE + RID FLR LK + S IY++LRK +++VN K++ +Y+L GD + Sbjct: 1 MIEFIIDEEYETVRIDRFLRKHLKNIALSEIYKMLRKAKIKVNNKKVSQDYRLVLGDIIF 60 Query: 68 IPPVRVAEREEEAVSPHLQKV--AALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIE 125 + E + E L ++ L +I YE++++ ++NK G +H GSG ++E Sbjct: 61 VFLPESFEEKNEETFIELNEIRKEELKSMIAYENENLFIINKNLGDVIHKGSGHDISLLE 120 Query: 126 GLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 R+ + + V+R+D+ TSG+++ AK R + ++++ + K Y LV G+ + Sbjct: 121 EFRSYYSNNK-INFVNRIDKLTSGLVIGAKNIKTAREIAKEIQLGNILKKYYILVYGKIE 179 Query: 186 SHVKSVQAPLLKNILQSGERIVRVS----QEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 + +L+N L+ E V VS ++ K S T +K TL+ TGRT Sbjct: 180 K-----EEFILENYLKKDEEKVIVSDVEKEDYKKSITHYKRINGDNDYTLLEAELKTGRT 234 Query: 242 HQIRVHTQYAGHPIAFDDRYG 262 HQ+R + GH I D +YG Sbjct: 235 HQLRAQLNHLGHTIVGDTKYG 255 >UniRef50_Q26D11 Pseudouridine synthase n=2 Tax=Flavobacteria RepID=Q26D11_9BACT Length = 561 Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 75/213 (35%), Positives = 112/213 (52%), Gaps = 16/213 (7%) Query: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVA 154 ++YEDD I+++NKP G + V L+ L P+A LVHRLD TSG+L+ Sbjct: 360 VIYEDDAIIIVNKPEEFLSVPGKTIKDSVYSRLKELYPDATGPILVHRLDMSTSGILVAT 419 Query: 155 KKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGK 214 K + EQ + + K Y+AL+ G +++ ++ PL ++ ++V + GK Sbjct: 420 KNLEYYHFIQEQFINRTISKRYVALLNGVLENNEGMIELPLRVDLDNRPTQLV-CYEYGK 478 Query: 215 PSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYA---GHPIAFDDRYGDREFDRQLT 271 + T+++V ER TLV P+TGRTHQ+RVH +A PI DD Y Sbjct: 479 SARTKYQVLERREKETLVHFYPITGRTHQLRVHAAHASGLNAPIVGDDLY---------- 528 Query: 272 EAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPM 304 GT NRL LHA +KF HP T + + +AP+ Sbjct: 529 --GTATNRLHLHAEFIKFIHPITHKTVSFKAPV 559 >UniRef50_Q1J0S8 Pseudouridine synthase n=7 Tax=Deinococci RepID=Q1J0S8_DEIGD Length = 341 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 99/316 (31%), Positives = 144/316 (45%), Gaps = 37/316 (11%) Query: 21 RIDNFLRTQLKGVPKSMIY-RILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEE 79 R+D+ L L GV +S I K KL+ G+ +R V+V + Sbjct: 33 RLDSVL-ADLTGVSRSQAAGWIAGGQVEVGGVVVQKASLKLKGGETLR---VQVPPPPDA 88 Query: 80 AVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-----------EGLR 128 VSP A+ +LYED+H++ +NKP G H G++ G + E Sbjct: 89 TVSPE-----AVPLDVLYEDEHLIAVNKPPGMVTHPAPGVTSGTLVNALLGRLTLPEQPG 143 Query: 129 ALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHV 188 A+ P+ +VHRLD+DTSGV++VAK A L +++ K YLA+ G W++ Sbjct: 144 AVGPDGYRPGIVHRLDKDTSGVIVVAKTVEAHARLAAAFKDRSTHKTYLAIAAGMWKAQG 203 Query: 189 K-SVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFA-----TLVRCSPVTGRTH 242 SV AP+ ++ + +R+ + ++T F + LVR P TGRTH Sbjct: 204 PVSVNAPVGRHP-TARQRMTVGGVGPREAQTLFTPLATHPDGHGRTLALVRAQPHTGRTH 262 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH + G PI D YG A + R LHA L HP TGE + + A Sbjct: 263 QIRVHLAHLGSPILGDAVYG---------RASAVMPRHALHAQFLTLPHPVTGETLHLHA 313 Query: 303 PMDEGLKRCLQKLRNA 318 P+ + L R L A Sbjct: 314 PVPDDLLRAWVALGGA 329 >UniRef50_Q2W2D5 Pseudouridine synthase n=39 Tax=Bacteria RepID=Q2W2D5_MAGSA Length = 505 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 99/330 (30%), Positives = 158/330 (47%), Gaps = 44/330 (13%) Query: 12 AITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDE--VRI 68 A+ +EAG R+D +L +L + ++ I ++ G V + + I +++ G V + Sbjct: 191 AVEPEEAGTRLDRWLALRLPELSRTRIKGLMEDGRVSLEETTISDASLRVKPGQCFVVDV 250 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGG------------ 116 PP A+ E + + A ++YED+ ++V++KP+G VH Sbjct: 251 PPDAPAQPEPQDI----------ALTVVYEDEDLIVIDKPAGMVVHPAPGNPDETLVNAL 300 Query: 117 ---SGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQ 173 G S I G++ RP +VHR+D+DTSG+L+ AK +A R L Q ++ Sbjct: 301 LAHCGESLAGIGGVK--RPG-----IVHRIDKDTSGLLVAAKTDAAHRGLATQFAAHTLE 353 Query: 174 KDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFA--TL 231 + Y ALV G ++ + +N +++ V GKP+ TR++V + +A +L Sbjct: 354 RAYWALVWGTPSPRQGEIEGNIGRNP-NDRKKMAVVKSGGKPALTRYRVLKSFAGGAVSL 412 Query: 232 VRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLT---EAGTGL---NRLFLHAA 285 V C TGRTHQIRVH GHP+ D YG + + E T L R LHA Sbjct: 413 VECRLATGRTHQIRVHMTTQGHPLVGDPVYGRIRGHKGVVLPPEVKTALIQFPRQALHAY 472 Query: 286 ALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 L F+HP G +R E+ M + +Q L Sbjct: 473 LLGFSHPTKGYDVRFESGMPLDINALMQIL 502 >UniRef50_B1ZYX0 Pseudouridine synthase n=4 Tax=Verrucomicrobia RepID=B1ZYX0_OPITP Length = 311 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 93/312 (29%), Positives = 151/312 (48%), Gaps = 33/312 (10%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEA 80 R D L + + + R G V I + + AGD + + E +A Sbjct: 16 RADKVLAAGVTEHSRVALQRSFDAGLVTRGGVPIGRDTTVTAGDTIEFSFAEIKPTEIKA 75 Query: 81 VSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS------------FGVIEGLR 128 V L +L+ED H+L +NK +G VH G S G + G+ Sbjct: 76 VDIPLT--------VLFEDKHMLAVNKAAGMVVHPGVATSEDTLVHALLAHCAGSLSGIG 127 Query: 129 AL-RPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 + RP +VHRLD++T+GV++VAK +A R+L +Q + ++K+Y+ALV G + Sbjct: 128 GVERPG-----IVHRLDKETTGVIVVAKTDAAHRALADQFATRTLKKEYVALVAGVPRLL 182 Query: 188 VKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA-FATLVRCSPVTGRTHQIRV 246 S+ + ++ + + V + G+P+ T +++ E + LVRC TGRTHQIRV Sbjct: 183 SGSIDRAIARHPVHRHR--MTVGEGGRPARTDWELVEAFGDIGALVRCRIFTGRTHQIRV 240 Query: 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDE 306 H + GHPI D YG + R T+ R+ LHA L THP +G+ + + AP+ + Sbjct: 241 HLKSLGHPILGDALYGWKPEPRLATQPA----RVMLHAEHLVLTHPISGKELDLRAPLPK 296 Query: 307 GLKRCLQKLRNA 318 +++LR + Sbjct: 297 DFVAMIKELRRS 308 >UniRef50_D0P480 Ribosomal large subunit pseudouridine synthase A, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0P480_PHYIN Length = 363 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 83/239 (34%), Positives = 125/239 (52%), Gaps = 31/239 (12%) Query: 85 LQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS--FGVIEGLRALRPEARFLELVHR 142 ++ A L IL+ DD ++V+NKP+ G+ V + + P AR +VHR Sbjct: 109 MELTAQLPLKILFRDDAVIVVNKPANILSVDGTDPDALMSVHRCVARVYPNAR---MVHR 165 Query: 143 LDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHV-------KSVQAPL 195 LD++TSG+L+VA +SA +SL+ Q R++ + K Y+A V G + + + VQ P+ Sbjct: 166 LDQETSGLLVVALTKSAAQSLNAQFRDRSVDKTYVARVDGWMMNDLEEKSESPRRVQIPM 225 Query: 196 LKNILQSGERIVRVSQEGKPSETRFKVEERYAF----------ATLVRCSPVTGRTHQIR 245 K++ +S + V +E PS + + E +TLV PVTG+THQ+R Sbjct: 226 EKHLTKSLIQHVVSDREVDPSSSLWSTTEYSVLSRDESGDDRKSTLVELKPVTGKTHQLR 285 Query: 246 VHTQYAGHPIAFDDRYG-DREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 +H Q+ GHPI D Y D + R +RL LHAA L FTHP T E + E+P Sbjct: 286 LHMQHLGHPILGDSLYSPDVVYHRA--------SRLCLHAAKLSFTHPVTNERLTFESP 336 >UniRef50_Q1D9A6 Pseudouridine synthase n=2 Tax=Cystobacterineae RepID=Q1D9A6_MYXXD Length = 316 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 99/318 (31%), Positives = 153/318 (48%), Gaps = 30/318 (9%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 + + + AD+AGQR+D F+ L G+ ++ + R+ G V+VN + K L AG + Sbjct: 6 LHTLTVDADKAGQRVDLFIGEAL-GLSRARLKRLFEAGAVKVNGRPAKKGLTLTAGQHIA 64 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHG-GSGLSFGVIEG 126 V V E EAV A +L+EDD ++ ++KP+G H SG + V Sbjct: 65 ---VEVEEESREAVPD-----ADFPLTVLHEDDSLVFVDKPAGRPSHPLQSGETGTVANA 116 Query: 127 LRALRPE-------ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 L A PE AR L HRLD +TSGV++ A+ R A ++ E + + K YLAL Sbjct: 117 LVARYPECALASLDAREGGLCHRLDVETSGVVVAARTRDAWNAVREAFGSRAVDKRYLAL 176 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRV---SQEGKPSETRFKVEERYAFATLVRCSP 236 V G + P L++ + +R+ +++ + + ++F V R ++V Sbjct: 177 VTGPLTDE-GDIDLP-LRHHPRHPDRVEPAPYGAEDARDAVSKFTVLSRSGEFSVVEVKI 234 Query: 237 VTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGE 296 +TG HQ+R H G PI D YG RE L R FLHA +L THP T Sbjct: 235 LTGVLHQVRAHLAGIGAPIVGDSLYGGREAPE--------LGRFFLHARSLGLTHPQTRR 286 Query: 297 VMRIEAPMDEGLKRCLQK 314 M + +P+ L+ L++ Sbjct: 287 NMTVHSPLPPELRAELER 304 >UniRef50_B5ZBC1 RluA n=15 Tax=Ureaplasma RepID=B5ZBC1_UREU1 Length = 299 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 86/292 (29%), Positives = 145/292 (49%), Gaps = 21/292 (7%) Query: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPVRVAER 76 + +RID FL ++ ++ I ++L + V VN I K Y L+ D V I + Sbjct: 9 SPKRIDKFL-VEVTDYSRTSIKKMLEQNLVLVNDNIITKQSYLLQKNDSVEIKNEQCVID 67 Query: 77 EEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARF 136 ++ + P A I++ED +LV+NKPSG VH S + + Sbjct: 68 SQKELLP-----FACPLEIVFEDQDLLVINKPSGMLVHPTSFQEQNTLANALKHYLKTDD 122 Query: 137 LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLL 196 + HRLD++TSG++++ K + AL L +Q +K ++K Y A+V ++ H + + Sbjct: 123 FYITHRLDKNTSGLIVICKNQKALCCLQQQFMQKTVKKSYYAIVHNRFDMH--HLHFMIN 180 Query: 197 KNILQSGERIVRV----SQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAG 252 + I S + +R+ ++ K + + KV E+Y LV S +TGRTHQIRVH ++ Sbjct: 181 EPIGHSYQDKLRMKTGDAKNVKEAISIVKVIEQYQNTALVEVSIITGRTHQIRVHMRHIN 240 Query: 253 HPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPM 304 HPI D YG +++ T + +LH+ + F HP T E++ + M Sbjct: 241 HPIYNDPLYG-------ISKHTTPYEQ-YLHSFYISFIHPSTNEIVEFKTLM 284 >UniRef50_A3HSB5 Pseudouridine synthase n=1 Tax=Algoriphagus sp. PR1 RepID=A3HSB5_9SPHI Length = 237 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 84/231 (36%), Positives = 116/231 (50%), Gaps = 18/231 (7%) Query: 95 ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPE-ARFLELVHRLDRDTSGVLLV 153 IL+EDD I+ +NKP+G VH S + + L+ LR + + VHRLDR TSG+LL Sbjct: 5 ILFEDDSIIAINKPAGLLVHRTSIAAQETVFALQILRDQIGMHVHPVHRLDRPTSGILLF 64 Query: 154 AKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKN---ILQSGERIVRVS 210 AKK L L E+ ++K+YL +VRG + + PL LQ + +V Sbjct: 65 AKKEEILPHLKNLFSERQIKKNYLTIVRGIPEQKKALIDHPLKSERSGRLQEAQTWYKVI 124 Query: 211 QEGKPSETRFKVEERYAFA--TLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDRE--- 265 E +E F RY + +L+ +P TGRTHQIR H + H I D ++GD + Sbjct: 125 SE---TEIPFDTTGRYPTSRYSLLSVNPETGRTHQIRRHLAHIRHYIIGDKKHGDNKQNI 181 Query: 266 -FDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 F Q GL L LHA L F HP T E + I P+ E + L+ L Sbjct: 182 FFQNQF-----GLENLLLHAIRLSFNHPITEETIEISCPVPEHFQSILKSL 227 >UniRef50_C0M8E2 Pseudouridine synthase n=3 Tax=Streptococcus equi RepID=C0M8E2_STRE4 Length = 301 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 85/283 (30%), Positives = 142/283 (50%), Gaps = 20/283 (7%) Query: 33 VPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALA 92 +P+ + + + K V VN + I + ++ GD +++ ++E+ L L Sbjct: 38 IPRKIRHFLRIKKHVWVNDELINWQSPVKQGDHIKLQ----FDQEDYPDKGILMGKPGLV 93 Query: 93 DVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLL 152 D LY+D+H++++NKP G HG ++ + A + ++ VHRLD +TSG +L Sbjct: 94 DC-LYQDEHLIIVNKPEGMKTHGNEPTELALLNHVSAYTGKTCYV--VHRLDMETSGAIL 150 Query: 153 VAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQE 212 AK L L+ L + +++DY AL+ GQ + + + P+ ++ +R+V S+ Sbjct: 151 FAKNPFILPILNRLLEHRDIKRDYWALIEGQLEQQTVTYRDPIGRHRHDRRKRVVD-SKH 209 Query: 213 GKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTE 272 G+ + T + + + LV C TGRTHQIRVH + HP+ GD + RQ E Sbjct: 210 GQEAITHLALLQAFDQTCLVNCRLETGRTHQIRVHLAHHKHPLI-----GDPLYSRQKAE 264 Query: 273 AGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 RL LHA L HP E++R+ AP + K LQ+L Sbjct: 265 ------RLMLHAHQLTLRHPLAQEMIRVTAP-SKSFKEGLQQL 300 >UniRef50_A4J1I1 Pseudouridine synthase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1I1_DESRM Length = 303 Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 92/319 (28%), Positives = 155/319 (48%), Gaps = 34/319 (10%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV--- 66 ++ + A + G+ + +FL+ K + + ++ +GE+ N ++ + GD+V Sbjct: 9 VLCVEASQNGKFLRDFLKH--KDISDRALKKLRNEGEILCNGAKVTWRTIVNTGDKVVLI 66 Query: 67 -RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHG-----GSGLS 120 IPP + + P L I+ ED+ I ++NK G VH L+ Sbjct: 67 YPIPP------RNQYLPPE-----PLDLSIISEDEDIALVNKQPGMCVHPTLAYPSGTLA 115 Query: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 G++ P F V+R+DR+TSG++LVAK + + L Q + K + + Y+ALV Sbjct: 116 NGLVYHWLENNPAPTF-HAVNRIDRNTSGLVLVAKNSYSAQKLFLQRKRKQLARSYVALV 174 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 G+ + PL K ++ +R ++S G+ + TRF+V + TL+R P TGR Sbjct: 175 HGKIVQRNGYIDLPLEKCEGKTTKR--QISSTGQQALTRFEVLQYITDCTLIRLMPETGR 232 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH + GHP+ D YG + + G R LHA + F HP TG M Sbjct: 233 THQIRVHLSHLGHPLVGDTLYGG-----SIAQIG----RHCLHADKISFLHPRTGHPMSF 283 Query: 301 EAPMDEGLKRCLQKLRNAR 319 + P+ E + + + ++ A+ Sbjct: 284 QIPLAEDMLQVITEMGRAK 302 >UniRef50_D0RPR1 Pseudouridine synthase n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RPR1_9RICK Length = 325 Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 95/322 (29%), Positives = 156/322 (48%), Gaps = 35/322 (10%) Query: 20 QRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRIPPVRVAEREE 78 +RID + Q + +S + +I++ +++N + +K P +K+++GD++ E Sbjct: 15 KRIDQVVAKQYPKISRSKVSKIIKTELLKLNGQILKDPSHKVKSGDQIEF---------E 65 Query: 79 EAVSPHLQKVAALADV-ILYEDDHILVLNKPSGTAVHGG---------SGLSFGVIEGLR 128 + + + D+ I++ED I++++KP G VH G +GL + L Sbjct: 66 NLIEETINLIPKKMDLNIIFEDQDIIIIDKPIGMVVHPGAGNYEDTMVNGLLYHCKNNLS 125 Query: 129 ALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHV 188 + E R +VHR+D+DTSG+L+VAK A + +Q E +++ YL V G + Sbjct: 126 GMNGEDR-PGIVHRIDKDTSGLLVVAKNDQAHAFIAKQFEEHSIKRSYLVFVYGILRPLH 184 Query: 189 KSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFA-----TLVRCSPVTGRTHQ 243 ++ + +N + V + GK + T ++ E + +LV+C TGRTHQ Sbjct: 185 GKIETLIGRNKTNRQKMSADVIR-GKDAITNYETLEVFKGNKIPDISLVKCILETGRTHQ 243 Query: 244 IRVHTQYAGHPIAFDDRYGD-----REFDRQLTEAGTGLNRLFLHAAALKFTHPGTGE-- 296 IRVH + G+PI D YG R D++ E L R LHA L F HP T E Sbjct: 244 IRVHMSHKGNPILGDQTYGKKIKKIRGIDQEFEEILKSLKRQALHAHTLGFIHPTTNEEV 303 Query: 297 VMRIEAPMD-EGLKRCLQKLRN 317 E P D LK L+ L+N Sbjct: 304 FFASELPDDLNKLKNRLETLKN 325 >UniRef50_B9L8H5 Pseudouridine synthase n=1 Tax=Nautilia profundicola AmH RepID=B9L8H5_NAUPA Length = 311 Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 102/309 (33%), Positives = 152/309 (49%), Gaps = 39/309 (12%) Query: 17 EAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPE-YKLEAGDEVRIPPVRVAE 75 + +R+D FL +L V ++ I ++++ V VN K IK KL+AGD V + ++ AE Sbjct: 8 DKNERVDKFLSQKL-NVSRNQIEQLIKNSLVSVNSKTIKKGGVKLQAGDTVDVE-IKEAE 65 Query: 76 REEEAVSPHLQKVAALADV-ILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG-------- 126 +E + D+ +LYED+ +LV+NKP G VH + + Sbjct: 66 SSKEDYEVNF-------DIPVLYEDEDVLVINKPPGIVVHPAPSVKEATLVDWLKTKNYR 118 Query: 127 LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 L + E RF +VHR+D++TSG L++AK A L QL++K M + Y+ L+ + Sbjct: 119 LSTIAGEERF-GIVHRIDKETSGALIIAKNNKAHEFLSAQLKDKTMGRYYIMLLNEPLKE 177 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRF-KVEERYAFATLVRCSPVTGRTHQIR 245 V V P+ +N + + G+ ++T F V E A A L TGRTHQIR Sbjct: 178 AV-CVDKPIARN--PKNRLKMAYVKNGREAKTLFVPVYENVAAAKL-----FTGRTHQIR 229 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMD 305 VH G I D YG +E L R+ LHA L F HP +G+ + I APM Sbjct: 230 VHLSTIGRYILGDTLYGKKE---------QKLPRVMLHAKELYFIHP-SGKKLSIIAPMF 279 Query: 306 EGLKRCLQK 314 + K+ L K Sbjct: 280 DDFKKNLPK 288 >UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0MJ49_RHOM4 Length = 355 Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 103/345 (29%), Positives = 149/345 (43%), Gaps = 57/345 (16%) Query: 19 GQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPVRVAERE 77 G R+D +L L ++ I R +R+G V VN + KP Y ++ GD + + +R E Sbjct: 19 GGRLDAYLARFLAQASRTKIQRGIREGRVTVNGVVVQKPAYTVQPGDVITLRILRPPPVE 78 Query: 78 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI------------- 124 L I+YED +++V+NK +G VH G G + Sbjct: 79 IVPEPIPLD--------IVYEDPYLIVVNKQAGLVVHPARGNRSGTLVNALLYYIGSGPV 130 Query: 125 --------------------EGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLH 164 G + EA +VHRLD+DT+G+++VAK L Sbjct: 131 RFDEEDDLPEDDEIGLSMVSTGPTEAKLEAPRPGIVHRLDKDTTGLIVVAKDDVTHTGLA 190 Query: 165 EQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEE 224 Q + + + YLA+V G ++A + ++ V GK + T ++V E Sbjct: 191 RQFEHRTIARTYLAIVWGVPDPPRGRIEAAIGRDPRDRQRMAVVPDDRGKRAVTHYEVVE 250 Query: 225 RYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDRE------------FDRQLTE 272 A LVR TGRTHQIRVH ++ GHP+ D YG R F QL Sbjct: 251 ALPAAALVRFKLETGRTHQIRVHARHIGHPVLGDPTYGGRTIRYGPHTPRRRAFYDQLFA 310 Query: 273 AGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 L R LHA L F HP TGE + EAP+ E + L++LR Sbjct: 311 R---LTRQALHAHTLGFRHPRTGEWLEFEAPLPEDMACALEQLRQ 352 >UniRef50_C1CWT3 Pseudouridine synthase n=1 Tax=Deinococcus deserti VCD115 RepID=C1CWT3_DEIDV Length = 321 Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 98/316 (31%), Positives = 149/316 (47%), Gaps = 37/316 (11%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPVRVAEREEE 79 R+D L L G +S + + G V+V + + K KL G+ + + P + + E Sbjct: 13 RLDAVL-AALSGASRSQVAAWIAGGHVKVEGQPVTKVSLKLRGGERIDVSPPALPDARVE 71 Query: 80 AVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGLRALRP------ 132 A L ++YEDD+++ +NKP G H G LS ++ L P Sbjct: 72 AEDLPLD--------VIYEDDYLIAVNKPPGMVTHPAPGVLSGTLVNALLGRMPLPEQPD 123 Query: 133 ---EARFLE-LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHV 188 EA + +VHRLD+DTSGV++VAK A L +++ +K YLA+ GQW++ Sbjct: 124 YDSEAGYRPGIVHRLDKDTSGVIVVAKTVGAHARLAAAFKDRETRKTYLAIAAGQWRADG 183 Query: 189 KS-VQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFA-----TLVRCSPVTGRTH 242 + V+AP+ ++ +Q +R+ + ++T F + LVR P TGRTH Sbjct: 184 PARVEAPIGRHPVQR-QRMTVGGANPREAQTLFTPLAAHPDGHGRTLALVRAQPRTGRTH 242 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH + G PI D YG R + L A LHA L HPGTG ++ + A Sbjct: 243 QIRVHLAHLGSPILGDAVYG-RSSETMLRHA--------LHAHFLSVPHPGTGRLLHLHA 293 Query: 303 PMDEGLKRCLQKLRNA 318 P + + L A Sbjct: 294 PAPDDMLNAWIALGGA 309 >UniRef50_P0AA37 Ribosomal large subunit pseudouridine synthase A n=205 Tax=Proteobacteria RepID=RLUA_ECOLI Length = 219 Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 85/215 (39%), Positives = 112/215 (52%), Gaps = 14/215 (6%) Query: 94 VILYEDDHILVLNKPSGTAVHGG--SGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVL 151 VILY+DDHI+V+NKPSG G V+ ++ P+A E VHRLD TSGV+ Sbjct: 15 VILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQA---ESVHRLDMATSGVI 71 Query: 152 LVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQ 211 +VA ++A R L Q RE+ +K Y+A V G V PL+ + ++ V + Sbjct: 72 VVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV-CYE 130 Query: 212 EGKPSETRFKVEERYAFATL-VRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQL 270 GKP++T ++V E A T V P+TGR+HQ+RVH GHPI D Y Sbjct: 131 TGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYAS------- 183 Query: 271 TEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMD 305 EA RL LHA L THP G M +AP D Sbjct: 184 PEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 218 >UniRef50_C0ZH07 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZH07_BREBN Length = 306 Score = 120 bits (300), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 99/315 (31%), Positives = 154/315 (48%), Gaps = 30/315 (9%) Query: 9 KIVAITADEA--GQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 ++++ T DEA GQ + L+ + GV + ++ R KG + N + KL+AGD++ Sbjct: 4 ELISFTVDEADAGQTVREVLQKRY-GVSRRLLIRAKFKGSITRNGVLVFVNEKLQAGDKI 62 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVH-GGSGLSFGVIE 125 + AE L I YED+ ++V+ KP+G VH G+ S + Sbjct: 63 AVMVEEEAEETVAPEDMPLS--------IRYEDEDLMVIAKPAGLVVHPTGNHPSGTLAN 114 Query: 126 GLRAL---RPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 G+ A R E R V+RLD+DTSG+++VAK + A + + +Q+ Y A+V+G Sbjct: 115 GMIAYWKKRGENRKFRAVNRLDKDTSGLMIVAKNQWAHEQFSRMQQIRTLQRTYRAIVQG 174 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVR-VSQEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 +S ++ P+ L I R V +G+ + T ++V R + V TGRT Sbjct: 175 IVESDDGTINTPIG---LAENSFITRQVRPDGQTAVTHYRVLARGEGMSFVEVKLETGRT 231 Query: 242 HQIRVHTQYAGHPIAFDDRY-GDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 HQIRVH GHP+A DD Y G+RE + R LHA L F HP +G M Sbjct: 232 HQIRVHMSSEGHPLAGDDLYGGEREH----------IGRQALHAWGLSFVHPRSGLAMSW 281 Query: 301 EAPMDEGLKRCLQKL 315 E P+ +++ Q+ Sbjct: 282 EEPLPNDMEQLAQQF 296 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q8ZQ16 Ribosomal large subunit pseudouridine synthase C... 486 e-136 UniRef50_P44433 Ribosomal large subunit pseudouridine synthase C... 424 e-117 UniRef50_Q8ZFU1 Ribosomal large subunit pseudouridine synthase C... 423 e-117 UniRef50_Q9KQH0 Ribosomal large subunit pseudouridine synthase C... 410 e-113 UniRef50_Q5QZ45 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 406 e-112 UniRef50_C0N6T7 Pseudouridine synthase n=1 Tax=Methylophaga thio... 374 e-102 UniRef50_B3PEU4 Pseudouridine synthase n=18 Tax=Gammaproteobacte... 373 e-102 UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 370 e-101 UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3... 366 e-100 UniRef50_Q89AH2 Ribosomal large subunit pseudouridine synthase C... 366 e-100 UniRef50_C5S931 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 365 e-100 UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (c... 364 2e-99 UniRef50_Q0VQN9 Pseudouridine synthase n=2 Tax=Alcanivorax RepID... 362 7e-99 UniRef50_Q126H9 Pseudouridine synthase n=1 Tax=Polaromonas sp. J... 361 2e-98 UniRef50_D0L1K7 Pseudouridine synthase n=1 Tax=Halothiobacillus ... 360 2e-98 UniRef50_A0L8J2 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 360 3e-98 UniRef50_Q3JQ55 Pseudouridine synthase n=170 Tax=cellular organi... 360 3e-98 UniRef50_Q0A8Q9 Pseudouridine synthase n=4 Tax=Ectothiorhodospir... 360 3e-98 UniRef50_Q492Q1 Pseudouridine synthase n=2 Tax=Candidatus Blochm... 359 7e-98 UniRef50_Q82WZ5 Ribosomal large subunit pseudouridine synthase D... 357 2e-97 UniRef50_Q21K97 Pseudouridine synthase n=10 Tax=Gammaproteobacte... 356 8e-97 UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides R... 356 8e-97 UniRef50_A3Y8C6 Pseudouridine synthase n=1 Tax=Marinomonas sp. M... 355 1e-96 UniRef50_C9KPZ8 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 353 4e-96 UniRef50_B0U5V6 Pseudouridine synthase n=7 Tax=Xylella fastidios... 352 1e-95 UniRef50_B8FLB4 Pseudouridine synthase n=2 Tax=Bacteria RepID=B8... 351 2e-95 UniRef50_Q2LWV4 Pseudouridine synthase n=1 Tax=Syntrophus acidit... 350 3e-95 UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri ... 350 3e-95 UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae Re... 350 4e-95 UniRef50_Q2SK59 Pseudouridine synthase n=3 Tax=Gammaproteobacter... 349 6e-95 UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 349 7e-95 UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B... 349 9e-95 UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defec... 348 1e-94 UniRef50_Q9JVB6 Ribosomal large subunit pseudouridine synthase D... 348 1e-94 UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix o... 348 2e-94 UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiace... 345 1e-93 UniRef50_Q8XYX8 Ribosomal large subunit pseudouridine synthase D... 344 2e-93 UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_... 343 6e-93 UniRef50_C6WV38 Pseudouridine synthase n=3 Tax=Proteobacteria Re... 343 6e-93 UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1... 343 6e-93 UniRef50_A6GP31 Pseudouridine synthase n=1 Tax=Limnobacter sp. M... 343 6e-93 UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0... 342 1e-92 UniRef50_B6BTS8 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 342 1e-92 UniRef50_Q5ZT70 Pseudouridine synthase n=5 Tax=Legionella RepID=... 342 1e-92 UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes Rep... 342 1e-92 UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_... 341 2e-92 UniRef50_C1F7V3 Pseudouridine synthase n=1 Tax=Acidobacterium ca... 341 2e-92 UniRef50_A9IQ66 Pseudouridine synthase n=5 Tax=Bacteria RepID=A9... 340 3e-92 UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae ... 340 3e-92 UniRef50_C4FWV7 Pseudouridine synthase n=2 Tax=Firmicutes RepID=... 340 4e-92 UniRef50_Q3A0C2 Pseudouridine synthase n=13 Tax=Bacteria RepID=Q... 340 5e-92 UniRef50_A0L9J0 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 339 7e-92 UniRef50_B2RIT5 Pseudouridine synthase n=80 Tax=root RepID=B2RIT... 339 8e-92 UniRef50_A5WFS2 Pseudouridine synthase n=3 Tax=Psychrobacter Rep... 339 1e-91 UniRef50_Q0AFD5 Pseudouridine synthase n=3 Tax=Nitrosomonas RepI... 338 1e-91 UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 338 2e-91 UniRef50_B8E0R4 Pseudouridine synthase n=1 Tax=Dictyoglomus turg... 338 2e-91 UniRef50_Q49WX8 Pseudouridine synthase n=1 Tax=Staphylococcus sa... 337 3e-91 UniRef50_A5EX53 Pseudouridine synthase n=1 Tax=Dichelobacter nod... 337 3e-91 UniRef50_B9JRD0 Pseudouridine synthase n=1 Tax=Agrobacterium vit... 336 7e-91 UniRef50_A1URK8 Pseudouridine synthase n=2 Tax=Bartonella RepID=... 336 7e-91 UniRef50_A5WCP4 Pseudouridine synthase n=15 Tax=Moraxellaceae Re... 335 9e-91 UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B... 335 1e-90 UniRef50_P65834 Ribosomal large subunit pseudouridine synthase D... 335 1e-90 UniRef50_Q0F3G4 Pseudouridine synthase n=1 Tax=Mariprofundus fer... 335 2e-90 UniRef50_A7NB61 Pseudouridine synthase n=18 Tax=Francisella RepI... 334 2e-90 UniRef50_A3EQJ0 Pseudouridine synthase n=1 Tax=Leptospirillum ru... 334 3e-90 UniRef50_C7RM94 Pseudouridine synthase n=11 Tax=Proteobacteria R... 334 3e-90 UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella ad... 333 4e-90 UniRef50_Q01Q94 Pseudouridine synthase n=1 Tax=Candidatus Soliba... 333 5e-90 UniRef50_P74346 Uncharacterized RNA pseudouridine synthase slr16... 333 6e-90 UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter f... 333 6e-90 UniRef50_D0KVM5 Pseudouridine synthase n=11 Tax=Proteobacteria R... 332 7e-90 UniRef50_Q3AVX8 Pseudouridine synthase n=40 Tax=cellular organis... 332 7e-90 UniRef50_C8PW17 Pseudouridine synthase n=5 Tax=Moraxellaceae Rep... 332 1e-89 UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limn... 332 1e-89 UniRef50_D1CBT6 Pseudouridine synthase n=1 Tax=Thermobaculum ter... 331 2e-89 UniRef50_Q2W2D5 Pseudouridine synthase n=39 Tax=Bacteria RepID=Q... 331 2e-89 UniRef50_C7H7W3 Ribosomal large subunit pseudouridine synthase D... 330 4e-89 UniRef50_A9BMW0 Pseudouridine synthase n=10 Tax=Comamonadaceae R... 330 4e-89 UniRef50_A3M2Y1 Pseudouridine synthase n=18 Tax=Gammaproteobacte... 330 4e-89 UniRef50_D2R7T3 Pseudouridine synthase, RluA family n=1 Tax=Pire... 329 6e-89 UniRef50_UPI00016C3FBA ribosomal large subunit pseudouridine syn... 329 7e-89 UniRef50_Q2RQY9 Pseudouridine synthase n=3 Tax=Alphaproteobacter... 329 8e-89 UniRef50_B6AN83 Pseudouridine synthase n=2 Tax=Leptospirillum Re... 328 1e-88 UniRef50_D1RB31 Pseudouridine synthase n=1 Tax=Parachlamydia aca... 328 1e-88 UniRef50_C8PVB8 Pseudouridine synthase n=2 Tax=Moraxellaceae Rep... 328 2e-88 UniRef50_A5GW76 Pseudouridine synthase n=1 Tax=Synechococcus sp.... 327 2e-88 UniRef50_B5JUW4 Pseudouridine synthase n=1 Tax=gamma proteobacte... 327 3e-88 UniRef50_C8WW59 Pseudouridine synthase n=2 Tax=Alicyclobacillus ... 327 4e-88 UniRef50_Q1ILA4 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 327 4e-88 UniRef50_Q1Q689 Similar to ribosomal large subunit pseudouridine... 327 4e-88 UniRef50_C6XFD0 Pseudouridine synthase n=1 Tax=Candidatus Liberi... 327 4e-88 UniRef50_B6BTN1 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 327 5e-88 UniRef50_A7HV45 Pseudouridine synthase n=56 Tax=Alphaproteobacte... 326 5e-88 UniRef50_A3RGY8 Pseudouridine synthase n=1 Tax=uncultured bacter... 326 8e-88 UniRef50_A0Z298 Pseudouridine synthase n=1 Tax=marine gamma prot... 325 9e-88 UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae... 325 1e-87 UniRef50_D0J9U5 Pseudouridine synthase n=2 Tax=Blattabacterium R... 325 1e-87 UniRef50_B0TWR8 Pseudouridine synthase n=19 Tax=Francisella RepI... 325 1e-87 UniRef50_B0VJ94 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 325 1e-87 UniRef50_C8QZ10 Pseudouridine synthase n=1 Tax=Desulfurivibrio a... 325 2e-87 UniRef50_Q03WF6 Pseudouridine synthase n=9 Tax=Firmicutes RepID=... 325 2e-87 UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_17... 325 2e-87 UniRef50_A6SXT6 Pseudouridine synthase n=1 Tax=Janthinobacterium... 324 2e-87 UniRef50_C8P3R0 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 324 3e-87 UniRef50_Q87AR7 Ribosomal large subunit pseudouridine synthase D... 323 5e-87 UniRef50_A5EXY5 Pseudouridine synthase n=2 Tax=Cardiobacteriacea... 323 6e-87 UniRef50_Q2S3B7 Pseudouridine synthase n=1 Tax=Salinibacter rube... 323 7e-87 UniRef50_P50513 Ribosomal large subunit pseudouridine synthase D... 323 7e-87 UniRef50_Q6AJM1 Pseudouridine synthase n=1 Tax=Desulfotalea psyc... 323 7e-87 UniRef50_A1AVB5 Pseudouridine synthase n=2 Tax=sulfur-oxidizing ... 322 8e-87 UniRef50_Q6MEC0 Pseudouridine synthase n=1 Tax=Candidatus Protoc... 321 2e-86 UniRef50_A5IBH6 Pseudouridine synthase n=6 Tax=Legionella RepID=... 321 2e-86 UniRef50_B9YI75 Pseudouridine synthase, RluA family n=1 Tax='Nos... 321 3e-86 UniRef50_B6J6C4 Pseudouridine synthase n=7 Tax=Coxiella burnetii... 320 3e-86 UniRef50_Q7UHX8 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 320 4e-86 UniRef50_A8ZXZ8 Pseudouridine synthase n=1 Tax=Desulfococcus ole... 320 4e-86 UniRef50_C0QAZ3 RluD1 n=1 Tax=Desulfobacterium autotrophicum HRM... 319 7e-86 UniRef50_B2A2J2 Pseudouridine synthase n=1 Tax=Natranaerobius th... 319 8e-86 UniRef50_C9LM35 Pseudouridine synthase n=1 Tax=Dialister invisus... 318 2e-85 UniRef50_C5VRN0 Pseudouridine synthase n=1 Tax=Clostridium botul... 318 2e-85 UniRef50_Q312A0 Pseudouridine synthase, RluD n=6 Tax=Bacteria Re... 317 3e-85 UniRef50_A9NGF1 Pseudouridine synthase n=1 Tax=Acholeplasma laid... 316 5e-85 UniRef50_B9ZR86 Pseudouridine synthase, RluA family n=1 Tax=Thio... 316 6e-85 UniRef50_C0ZH07 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 316 7e-85 UniRef50_D1VS73 Pseudouridine synthase n=1 Tax=Peptoniphilus lac... 315 9e-85 UniRef50_C9RQF0 Pseudouridine synthase, RluA family n=1 Tax=Fibr... 315 1e-84 UniRef50_A7H6D3 Pseudouridine synthase n=6 Tax=Cystobacterineae ... 315 2e-84 UniRef50_C6J6E3 Pseudouridine synthase n=2 Tax=Bacillales RepID=... 315 2e-84 UniRef50_C7MES4 Pseudouridine synthase, RluA family n=5 Tax=Acti... 314 2e-84 UniRef50_Q28US1 Pseudouridine synthase n=43 Tax=Rhodobacterales ... 314 3e-84 UniRef50_D0RPR1 Pseudouridine synthase n=1 Tax=alpha proteobacte... 314 3e-84 UniRef50_Q0BWH2 Pseudouridine synthase n=3 Tax=Alphaproteobacter... 313 5e-84 UniRef50_D1BAB3 Pseudouridine synthase n=1 Tax=Thermanaerovibrio... 313 6e-84 UniRef50_C6CWL6 Pseudouridine synthase n=2 Tax=Paenibacillus Rep... 313 7e-84 UniRef50_B5YKV0 Pseudouridine synthase n=1 Tax=Thermodesulfovibr... 312 8e-84 UniRef50_A8GQ59 Pseudouridine synthase n=15 Tax=Rickettsia RepID... 312 8e-84 UniRef50_C1A885 Pseudouridine synthase n=1 Tax=Gemmatimonas aura... 312 9e-84 UniRef50_A1AW00 Pseudouridine synthase n=2 Tax=sulfur-oxidizing ... 312 1e-83 UniRef50_A0Q1S9 Pseudouridine synthase n=32 Tax=Clostridium RepI... 311 2e-83 UniRef50_Q2SS88 Pseudouridine synthase n=4 Tax=Mollicutes RepID=... 311 3e-83 UniRef50_B3QB01 Pseudouridine synthase n=3 Tax=Rhodopseudomonas ... 310 4e-83 UniRef50_D1Y3Y9 Pseudouridine synthase n=1 Tax=Pyramidobacter pi... 310 4e-83 UniRef50_P59838 Ribosomal large subunit pseudouridine synthase D... 310 5e-83 UniRef50_C1SM47 Pseudouridine synthase n=1 Tax=Denitrovibrio ace... 310 6e-83 UniRef50_Q4FN11 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q4... 309 1e-82 UniRef50_B8GX34 Pseudouridine synthase n=7 Tax=Caulobacteraceae ... 308 1e-82 UniRef50_C6BSG2 Pseudouridine synthase, RluA family n=1 Tax=Desu... 308 1e-82 UniRef50_A3DDK9 Pseudouridine synthase, RluA family n=3 Tax=Clos... 308 2e-82 UniRef50_C0GNZ6 Pseudouridine synthase, RluA family n=1 Tax=Desu... 308 2e-82 UniRef50_C4XSN0 Ribosomal large subunit pseudouridine synthase D... 308 2e-82 UniRef50_Q13E92 Pseudouridine synthase n=28 Tax=Alphaproteobacte... 308 2e-82 UniRef50_Q211J3 Pseudouridine synthase n=81 Tax=Alphaproteobacte... 307 3e-82 UniRef50_A6DUC9 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 307 3e-82 UniRef50_Q2NIN6 Pseudouridine synthase n=4 Tax=Candidatus Phytop... 306 4e-82 UniRef50_B4U613 Pseudouridine synthase, RluA family n=1 Tax=Hydr... 306 6e-82 UniRef50_B8GZR6 Pseudouridine synthase n=2 Tax=Caulobacter vibri... 306 8e-82 UniRef50_A5INM9 Pseudouridine synthase n=7 Tax=Thermotogaceae Re... 305 2e-81 UniRef50_A1HR26 Pseudouridine synthase, RluA family n=1 Tax=Ther... 305 2e-81 UniRef50_C9M7B4 Pseudouridine synthase n=1 Tax=Jonquetella anthr... 305 2e-81 UniRef50_Q0F3G2 Possible pseudouridine synthase n=1 Tax=Mariprof... 305 2e-81 UniRef50_C6XNC0 Pseudouridine synthase n=1 Tax=Hirschia baltica ... 305 2e-81 UniRef50_B9JWI8 Pseudouridine synthase n=1 Tax=Agrobacterium vit... 304 2e-81 UniRef50_B1VEM5 Pseudouridine synthase n=3 Tax=Corynebacterium R... 304 2e-81 UniRef50_B2IK20 Pseudouridine synthase n=2 Tax=Beijerinckiaceae ... 304 2e-81 UniRef50_P54604 Uncharacterized RNA pseudouridine synthase yhcT ... 304 3e-81 UniRef50_A4WSV2 Pseudouridine synthase n=41 Tax=Alphaproteobacte... 304 3e-81 UniRef50_C1ZB48 Pseudouridine synthase, RluA family n=1 Tax=Plan... 303 4e-81 UniRef50_C0QPR5 Pseudouridine synthase n=4 Tax=Hydrogenothermace... 303 4e-81 UniRef50_Q2IJ40 Pseudouridine synthase n=7 Tax=Cystobacterineae ... 303 6e-81 UniRef50_A6NQQ9 Pseudouridine synthase n=1 Tax=Bacteroides capil... 303 6e-81 UniRef50_Q5PAD0 Pseudouridine synthase n=5 Tax=Anaplasma RepID=Q... 303 6e-81 UniRef50_Q8K9E9 Ribosomal large subunit pseudouridine synthase D... 302 9e-81 UniRef50_D2RBY1 Pseudouridine synthase, RluA family n=1 Tax=Gard... 302 1e-80 UniRef50_A3VN52 Ribosomal large subunit pseudouridine synthase C... 302 1e-80 UniRef50_Q2G4F0 Pseudouridine synthase n=12 Tax=Alphaproteobacte... 302 1e-80 UniRef50_Q1MQ60 Pseudouridylate synthases, 23S RNA-specific n=1 ... 302 1e-80 UniRef50_B2KBB0 Pseudouridine synthase n=1 Tax=Elusimicrobium mi... 302 1e-80 UniRef50_A8IAL9 Pseudouridine synthase n=2 Tax=Xanthobacteraceae... 302 1e-80 UniRef50_C0QV86 Pseudouridine synthase n=2 Tax=Brachyspira RepID... 302 1e-80 UniRef50_C7LWM1 Pseudouridine synthase, RluA family n=1 Tax=Desu... 301 2e-80 UniRef50_Q0ANT2 Pseudouridine synthase n=2 Tax=Hyphomonadaceae R... 301 2e-80 UniRef50_B0K860 Pseudouridine synthase n=11 Tax=Thermoanaerobact... 301 2e-80 UniRef50_D1AV01 Pseudouridine synthase n=2 Tax=Bacteria RepID=D1... 301 2e-80 UniRef50_D1U4S9 Pseudouridine synthase, RluA family n=1 Tax=Desu... 301 3e-80 UniRef50_D1N7N8 Pseudouridine synthase, RluA family n=1 Tax=Vict... 301 3e-80 UniRef50_A8MF48 Pseudouridine synthase n=12 Tax=Clostridiaceae R... 301 3e-80 UniRef50_A8F4Z7 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 300 3e-80 UniRef50_A9IIW7 Pseudouridine synthase n=5 Tax=Bordetella RepID=... 300 3e-80 UniRef50_C0Z877 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 300 4e-80 UniRef50_D2L0S2 Pseudouridine synthase, RluA family n=1 Tax=Desu... 299 8e-80 UniRef50_B5ZBC1 RluA n=15 Tax=Ureaplasma RepID=B5ZBC1_UREU1 299 1e-79 UniRef50_B8J173 Pseudouridine synthase, RluA family n=2 Tax=Desu... 299 1e-79 UniRef50_B8FTI5 Pseudouridine synthase n=2 Tax=Desulfitobacteriu... 298 1e-79 UniRef50_C8NZX3 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 298 2e-79 UniRef50_C8X1I9 Pseudouridine synthase, RluA family n=1 Tax=Desu... 298 2e-79 UniRef50_C0ZCK6 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 298 2e-79 UniRef50_B3DV48 Pseudouridine synthase n=1 Tax=Methylacidiphilum... 297 3e-79 UniRef50_B1ZYX0 Pseudouridine synthase n=4 Tax=Verrucomicrobia R... 297 3e-79 UniRef50_A6CF60 Pseudouridine synthase n=1 Tax=Planctomyces mari... 297 4e-79 UniRef50_B3T0Q8 Putative RNA pseudouridylate synthase n=2 Tax=pr... 296 5e-79 UniRef50_C0E4Q3 Pseudouridine synthase n=2 Tax=Corynebacterium m... 295 1e-78 UniRef50_B7GLK3 Pseudouridine synthase n=11 Tax=Bacillaceae RepI... 295 1e-78 UniRef50_C2W5F3 Pseudouridine synthase n=4 Tax=Bacillus RepID=C2... 295 1e-78 UniRef50_C6XFC8 Ribosomal large subunit pseudouridine synthase C... 293 4e-78 UniRef50_Q0BUM2 Pseudouridine synthase n=12 Tax=Acetobacteraceae... 293 4e-78 UniRef50_UPI0001C42CC7 hypothetical protein BpOF4_01845 n=1 Tax=... 293 5e-78 UniRef50_Q6MGX8 Pseudouridine synthase n=1 Tax=Bdellovibrio bact... 293 6e-78 UniRef50_Q057L6 Pseudouridine synthase n=1 Tax=Buchnera aphidico... 292 1e-77 UniRef50_Q14NK8 Probable pseudouridine synthase d protein n=1 Ta... 292 1e-77 UniRef50_Q1D114 Pseudouridine synthase, RluA family n=6 Tax=Cyst... 292 1e-77 UniRef50_B1H0R5 Pseudouridine synthase n=1 Tax=uncultured Termit... 292 1e-77 UniRef50_D0XS67 Pseudouridine synthase n=1 Tax=Brevundimonas sub... 291 2e-77 UniRef50_D1Y726 Ribosomal large subunit pseudouridine synthase D... 291 3e-77 UniRef50_A6TSZ4 Pseudouridine synthase n=1 Tax=Alkaliphilus meta... 290 3e-77 UniRef50_A8Z5T0 Pseudouridine synthase n=3 Tax=Candidatus Sulcia... 290 4e-77 UniRef50_A4J9H9 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 290 4e-77 UniRef50_Q2GGY1 Pseudouridine synthase n=13 Tax=Rickettsiales Re... 290 4e-77 UniRef50_C4XFS9 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=... 290 4e-77 UniRef50_C1CWT3 Pseudouridine synthase n=1 Tax=Deinococcus deser... 290 4e-77 UniRef50_D0LU78 Pseudouridine synthase n=1 Tax=Haliangium ochrac... 288 1e-76 UniRef50_B8CWB7 Pseudouridine synthase n=1 Tax=Halothermothrix o... 288 1e-76 UniRef50_A5ZUU7 Pseudouridine synthase n=1 Tax=Ruminococcus obeu... 288 1e-76 UniRef50_A4J1I1 Pseudouridine synthase n=1 Tax=Desulfotomaculum ... 288 2e-76 UniRef50_D2LES8 Pseudouridine synthase, RluA family n=1 Tax=Rhod... 286 6e-76 UniRef50_D2ELJ1 Pseudouridine synthase n=1 Tax=Pediococcus acidi... 286 7e-76 UniRef50_UPI0001C37137 ribosomal large subunit pseudouridine syn... 286 7e-76 UniRef50_C6LL16 Pseudouridine synthase n=3 Tax=Clostridiales Rep... 285 1e-75 UniRef50_A3ZV48 Pseudouridine synthase n=1 Tax=Blastopirellula m... 285 1e-75 UniRef50_A4J479 Pseudouridine synthase n=1 Tax=Desulfotomaculum ... 285 1e-75 UniRef50_A9MGU8 Pseudouridine synthase n=1 Tax=Salmonella enteri... 285 2e-75 UniRef50_B7HGW1 Pseudouridine synthase n=52 Tax=Bacillales RepID... 285 2e-75 UniRef50_B0PEI9 Pseudouridine synthase n=5 Tax=Bacteria RepID=B0... 285 2e-75 UniRef50_C1FEQ4 Predicted protein n=2 Tax=Micromonas RepID=C1FEQ... 285 2e-75 UniRef50_B6IQX5 Pseudouridine synthase n=1 Tax=Rhodospirillum ce... 284 3e-75 UniRef50_Q6Q916 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q6... 284 3e-75 UniRef50_A4FXG9 Pseudouridine synthase, RluA family n=5 Tax=Meth... 284 4e-75 UniRef50_C2D7A7 Pseudouridine synthase n=1 Tax=Atopobium vaginae... 283 4e-75 UniRef50_Q67N67 Pseudouridine synthase n=1 Tax=Symbiobacterium t... 283 7e-75 UniRef50_D2RJC8 Pseudouridine synthase, RluA family n=2 Tax=Veil... 283 7e-75 UniRef50_D2M2K8 Pseudouridine synthase, RluA family n=1 Tax=Baci... 283 8e-75 UniRef50_C7GZW0 Pseudouridine synthase n=1 Tax=Eubacterium saphe... 282 9e-75 UniRef50_A7HL94 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 282 1e-74 UniRef50_A9KNX9 Pseudouridine synthase n=21 Tax=Bacteria RepID=A... 281 2e-74 UniRef50_O31613 Uncharacterized RNA pseudouridine synthase yjbO ... 281 2e-74 UniRef50_B7GAM3 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 281 2e-74 UniRef50_Q63E77 Pseudouridine synthase n=73 Tax=Bacillaceae RepI... 280 3e-74 Sequences not found previously or not previously below threshold: UniRef50_C8S0A2 Pseudouridine synthase n=1 Tax=Rhodobacter sp. S... 300 5e-80 UniRef50_C7MN62 Pseudouridine synthase n=8 Tax=Coriobacteriaceae... 280 5e-74 >UniRef50_Q8ZQ16 Ribosomal large subunit pseudouridine synthase C n=110 Tax=Gammaproteobacteria RepID=RLUC_SALTY Length = 319 Score = 486 bits (1253), Expect = e-136, Method: Composition-based stats. Identities = 311/319 (97%), Positives = 314/319 (98%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 MKTETPSVKIVAI ADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL Sbjct: 1 MKTETPSVKIVAIAADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS Sbjct: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 Query: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV Sbjct: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 RGQWQSHVK+VQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR Sbjct: 181 RGQWQSHVKTVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVHTQYAGHPIAFDDRYGDREFD+QLTEAGTGL RLFLHAAALKFTHPGTGEVMRI Sbjct: 241 THQIRVHTQYAGHPIAFDDRYGDREFDQQLTEAGTGLKRLFLHAAALKFTHPGTGEVMRI 300 Query: 301 EAPMDEGLKRCLQKLRNAR 319 EAPMD LKRCLQ LRNA+ Sbjct: 301 EAPMDNALKRCLQVLRNAK 319 >UniRef50_P44433 Ribosomal large subunit pseudouridine synthase C n=22 Tax=Gammaproteobacteria RepID=RLUC_HAEIN Length = 322 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 227/318 (71%), Positives = 269/318 (84%), Gaps = 2/318 (0%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 K SVK++ I+ DE+GQRIDN+L +LKGVPKS+IYRI+RKGEVRVNK RIKPEYKL+ Sbjct: 7 KIINSSVKMLTISEDESGQRIDNYLLAKLKGVPKSLIYRIVRKGEVRVNKGRIKPEYKLQ 66 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 GD VRIPPVRVAE+ + +S +L KVAAL + IL+EDD +++LNKPSG AVHGGSGL+F Sbjct: 67 TGDVVRIPPVRVAEKNDAPISKNLNKVAALENQILFEDDCLIILNKPSGIAVHGGSGLNF 126 Query: 122 GVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 GVIE LRALRPEARFLELVHRLDRDTSG+LL+AKKRSALR+LHEQLR K +QKDYLALVR Sbjct: 127 GVIEALRALRPEARFLELVHRLDRDTSGILLIAKKRSALRNLHEQLRVKTVQKDYLALVR 186 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 GQWQSH+K +QA LLKN L SGERIVRVS++GKPSETRF +EERY ATLV+ SPVTGRT Sbjct: 187 GQWQSHIKVIQASLLKNELSSGERIVRVSEQGKPSETRFSIEERYINATLVKASPVTGRT 246 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVHTQYAGHPIA DD+YGD++FD+Q+ E GLNRLFLHA +++F HP GE +R Sbjct: 247 HQIRVHTQYAGHPIALDDKYGDKDFDKQMNE--LGLNRLFLHAFSIRFEHPKNGETLRFN 304 Query: 302 APMDEGLKRCLQKLRNAR 319 A +D +K LQKLR ++ Sbjct: 305 ASLDHQMKAILQKLRESK 322 >UniRef50_Q8ZFU1 Ribosomal large subunit pseudouridine synthase C n=102 Tax=Gammaproteobacteria RepID=RLUC_YERPE Length = 320 Score = 423 bits (1088), Expect = e-117, Method: Composition-based stats. Identities = 255/317 (80%), Positives = 279/317 (88%), Gaps = 2/317 (0%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 MKT P V+++ I+ADEAGQRIDNFL +LKGVPKSMIYRI+RKGEVRVNK RIKPEYKL Sbjct: 1 MKTNNPVVQLITISADEAGQRIDNFLLAKLKGVPKSMIYRIVRKGEVRVNKGRIKPEYKL 60 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 GD VR+PPVRVAEREE VS L KVAALAD IL+EDD++LVLNKPSGTAVHGGSGLS Sbjct: 61 ADGDVVRVPPVRVAEREEVQVSAKLDKVAALADCILFEDDYLLVLNKPSGTAVHGGSGLS 120 Query: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLR K MQKDYLALV Sbjct: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRLKSMQKDYLALV 180 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 RGQWQSH K++QAPLLKNI+QSGER+V+VS EGKPSETRFK+EER+ ATLV+ SPVTGR Sbjct: 181 RGQWQSHCKAIQAPLLKNIMQSGERVVKVSSEGKPSETRFKIEERFEHATLVKASPVTGR 240 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH +AGHPIAFDDRYG REFD+QL GTGL+RLFLHAAAL+F HP TGE MRI Sbjct: 241 THQIRVHALHAGHPIAFDDRYGYREFDQQL--QGTGLHRLFLHAAALRFEHPNTGETMRI 298 Query: 301 EAPMDEGLKRCLQKLRN 317 EAP+D L+ CL LR Sbjct: 299 EAPLDNQLRHCLLALRK 315 >UniRef50_Q9KQH0 Ribosomal large subunit pseudouridine synthase C n=59 Tax=Proteobacteria RepID=RLUC_VIBCH Length = 315 Score = 410 bits (1054), Expect = e-113, Method: Composition-based stats. Identities = 205/320 (64%), Positives = 241/320 (75%), Gaps = 7/320 (2%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 M V+ + I D AGQRIDNFLR QLK +PKS++YRILRKGEVRVNKKR+K EYKL Sbjct: 1 MNEIRTQVQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKL 60 Query: 61 EAGDEVRIPPVRVAEREEEAVSPH--LQKVAALADVILYEDDHILVLNKPSGTAVHGGSG 118 EAGD VR+PPV V +E E P L KVA L I+YEDDH+L+LNKPSGTAVHGGSG Sbjct: 61 EAGDVVRVPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSG 120 Query: 119 LSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLA 178 L FG IE LRALRP+ARFLELVHR+DRDTSG+LLVAKKRSALR L Q REK +QK Y A Sbjct: 121 LHFGAIEALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYA 180 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVT 238 LV G W + K V APLLKN + S IVRV+ GKPSETRF++ E++A ATLV+ SPVT Sbjct: 181 LVMGHWDAECKVVNAPLLKNEVNS---IVRVNPNGKPSETRFRILEKFAEATLVQASPVT 237 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM 298 GRTHQIRVHTQY GHPIA+DDRYGDR FD + G+ RLFLHAA ++F HP + + + Sbjct: 238 GRTHQIRVHTQYMGHPIAWDDRYGDRRFDAYTAQ--FGIERLFLHAANIQFVHPASEKKL 295 Query: 299 RIEAPMDEGLKRCLQKLRNA 318 I AP++ L++ L K+R A Sbjct: 296 EIHAPLEAHLEQALTKMRQA 315 >UniRef50_Q5QZ45 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q5QZ45_IDILO Length = 315 Score = 406 bits (1044), Expect = e-112, Method: Composition-based stats. Identities = 204/315 (64%), Positives = 251/315 (79%), Gaps = 3/315 (0%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 MKT V+ ++A+E+GQRIDNFL QL+GVPKS++YRI+RKGEVR NKKRIKP+YKL Sbjct: 1 MKTIQQEVRWHTVSAEESGQRIDNFLIAQLRGVPKSLVYRIVRKGEVRANKKRIKPDYKL 60 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 + GD +RIPPV+V ER + S +L++VAAL ILYEDD ++++NKPSG AVHGGSGL Sbjct: 61 KEGDLIRIPPVKVNERPDLP-SANLEQVAALEHAILYEDDALMLINKPSGVAVHGGSGLQ 119 Query: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 FG+IEGLRALRP+ + LELVHR+DRDTSG+LLVAKKRS LRSLHEQLR K M K YLALV Sbjct: 120 FGLIEGLRALRPKEKSLELVHRIDRDTSGLLLVAKKRSVLRSLHEQLRNKEMNKQYLALV 179 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 RGQWQ V+SV+APL KN L+SGERIVRV EGK S TRF++++RY TLV SPVTGR Sbjct: 180 RGQWQKRVRSVEAPLKKNTLKSGERIVRVDAEGKASLTRFRIQQRYKEGTLVEASPVTGR 239 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH +AGHPIA D +YGD +FD ++ GLNRLFLHA L+F HP TG+ + Sbjct: 240 THQIRVHALHAGHPIAKDPKYGDTDFDNTMSR--LGLNRLFLHAWQLRFLHPVTGKEVAF 297 Query: 301 EAPMDEGLKRCLQKL 315 EAP+D+ L++ L++L Sbjct: 298 EAPLDDNLQQTLKQL 312 >UniRef50_C0N6T7 Pseudouridine synthase n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6T7_9GAMM Length = 318 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 161/315 (51%), Positives = 211/315 (66%), Gaps = 3/315 (0%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 K ++ V+ + I+ +AGQRIDNFL T KGVPKS IYR +RKGEVRVNK RIK YK++ Sbjct: 5 KPQSQKVQFIEISPSQAGQRIDNFLLTLEKGVPKSRIYRAIRKGEVRVNKGRIKQTYKIQ 64 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 AGD VR+PP+RVAERE L I++EDD +LVLNKPSG AVH GS + Sbjct: 65 AGDIVRVPPLRVAERE-APTHVSESLRQQLLQDIIFEDDSMLVLNKPSGLAVHAGSQIQV 123 Query: 122 GVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 GVIE R ++PE FLELVHRLDRDTSG LL+AK R +L +L +Q+ + K YL L++ Sbjct: 124 GVIEAFRIIKPELAFLELVHRLDRDTSGCLLLAKSRDSLLNLQQQMLSDQIDKRYLTLLK 183 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 G + + V+ PLLKN + SGER+V+V+ +GK ++T F ++ + A L TGRT Sbjct: 184 GILPNAEELVEQPLLKNTVSSGERMVKVTPDGKRAKTLFIRQQDLSLAQLTEVKLYTGRT 243 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVH + HP+A DD+YGDREF++ L GL RLFLHA L HP +GE M++E Sbjct: 244 HQIRVHAAWTQHPVAGDDKYGDREFNKTLK--SFGLKRLFLHAWRLGIRHPVSGEPMQLE 301 Query: 302 APMDEGLKRCLQKLR 316 AP+ L++ + KL Sbjct: 302 APLPTALQQVITKLE 316 >UniRef50_B3PEU4 Pseudouridine synthase n=18 Tax=Gammaproteobacteria RepID=B3PEU4_CELJU Length = 349 Score = 373 bits (958), Expect = e-102, Method: Composition-based stats. Identities = 165/315 (52%), Positives = 219/315 (69%), Gaps = 6/315 (1%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 +V+ + I A+ AGQR+DNFL QLKGVPKS IY ++RKGEVRVNK R +P+YKL AGD V Sbjct: 34 TVRFLTIDAELAGQRLDNFLMAQLKGVPKSRIYNLVRKGEVRVNKGRSRPDYKLCAGDLV 93 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALAD-VILYEDDHILVLNKPSGTAVHGGSGLSFGVIE 125 R+PPVR AE A + ++ AL D +L+E++ +LV+NKP G AVHGGSG++ G+IE Sbjct: 94 RVPPVRTAEARVAAPAKAGNQLVALLDQSVLFENEGLLVINKPPGLAVHGGSGVNLGLIE 153 Query: 126 GLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREK---GMQKDYLALVRG 182 LR +RPEAR+LELVHRLDRDTSG ++VAKKRS LR L LR+K ++K Y ALV G Sbjct: 154 TLRQMRPEARYLELVHRLDRDTSGCIMVAKKRSYLRHLQAALRDKVEGQIEKVYCALVVG 213 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 W + + V APLL+ + + ER VRV +GKPS T F V +RY TLV PVTGRTH Sbjct: 214 HWPARLHQVNAPLLRTEVGADERYVRVHPDGKPSLTLFNVIQRYQGFTLVEARPVTGRTH 273 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH ++AGH + D++YGD + + + G+ RLFLHA++L F PG ++ +EA Sbjct: 274 QIRVHARHAGHGLVGDEKYGDDDINLHMR--NQGIKRLFLHASSLGFCLPGEAQMTWVEA 331 Query: 303 PMDEGLKRCLQKLRN 317 P+ + L + L L + Sbjct: 332 PLPQDLAQPLSCLES 346 >UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=B9Y836_9FIRM Length = 307 Score = 370 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 107/320 (33%), Positives = 163/320 (50%), Gaps = 24/320 (7%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 +I+ + + G R+D +L T + +S +++ + VR++ +K YK++AGDE+ Sbjct: 2 ETRILIVEEQDQGVRLDKYLSTAMDDCSRSRAQQLIDEEAVRIDDLPVKNSYKVKAGDEI 61 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-E 125 + EEEA+ Q+ +A ++YED ++V+NKP G VH G G + Sbjct: 62 EVTL-----PEEEALEAQPQE---MALNVVYEDHDVIVINKPKGLVVHPGPGNPDHTLVN 113 Query: 126 GLRALRPEARF------LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 GL + +VHR+D+DTSG+++ K +A +SL +QL EK + Y AL Sbjct: 114 GLLWHCHDLSGINGVLRPGIVHRIDKDTSGLIVACKNDNAHQSLAKQLAEKTAGRQYYAL 173 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTG 239 V G ++ AP+ ++ +++ + +P+ T FKV ER+ TLV C TG Sbjct: 174 VHGVINHEYGTIDAPIGRDEKDR-QKMAVTEKNSRPAITHFKVVERFDNYTLVSCRLETG 232 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RTHQIRVH QY G PI D +Y R+ LHA L FTHP TGE M Sbjct: 233 RTHQIRVHMQYIGFPIVGDPKYSLRK--------TLPTQGQMLHAYQLSFTHPSTGERMT 284 Query: 300 IEAPMDEGLKRCLQKLRNAR 319 EAP+ + L +LR R Sbjct: 285 FEAPLPPEFEALLTQLRQER 304 >UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3ABZ7_CARHZ Length = 305 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 101/316 (31%), Positives = 162/316 (51%), Gaps = 26/316 (8%) Query: 11 VAITADEAGQRIDNFLRTQLK-GVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 V + ++ +G R+D FL Q + + +S I +++ +G+V VN K YK+ G+ + + Sbjct: 7 VVVNSEYSGLRLDKFLAEQEELELSRSFIKKLIEEGKVTVNGLHRKASYKVRGGEIIAV- 65 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 + E +V P + I+YED+ ++V+NK +G VH G G + Sbjct: 66 --LLPPPRELSVKPE-----EIPLDIVYEDEDLVVVNKKAGMVVHPAEGNWDGTLVNALL 118 Query: 130 LR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 +VHRLD+DTSG+L+VAK A +SL EQ++EK ++Y +V G Sbjct: 119 YHCQNLSGIGGVLRPGIVHRLDKDTSGLLVVAKNDLAHQSLAEQIKEKKAVREYWTIVHG 178 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY-AFATLVRCSPVTGRT 241 ++ + P+ ++ + + V GK ++T +KV E + TL++ +TGRT Sbjct: 179 YLKNKEGIIDLPIGRHP--RDRQKMAVVSNGKTAQTVYKVLEEFNKGFTLIQAKLLTGRT 236 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVH Y GHP+ D +YG + G+ R LHA L F HP +GE++ Sbjct: 237 HQIRVHFSYLGHPVLGDPKYGHQN-------NPFGVKRQMLHAIKLSFIHPRSGELLEFT 289 Query: 302 APMDEGLKRCLQKLRN 317 AP+ E +R L KLR Sbjct: 290 APLPEDFQRVLAKLRG 305 >UniRef50_Q89AH2 Ribosomal large subunit pseudouridine synthase C n=5 Tax=Buchnera aphidicola RepID=RLUC_BUCBP Length = 315 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 145/315 (46%), Positives = 208/315 (66%), Gaps = 1/315 (0%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 M + S + IT + QRIDNFLR K +P ++I +I+R G++R+NKKRI YKL Sbjct: 1 MTNQFSSTHFLNITENSEKQRIDNFLRKTFKRLPFNLICKIIRTGQIRINKKRINQNYKL 60 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 + GD VRIPP+ + + + + + ++ILYED++ L+LNKPSG +VH GSG++ Sbjct: 61 KLGDSVRIPPITIQSDSNKKIKLNTRLSIIFNNMILYEDNYFLILNKPSGMSVHSGSGIN 120 Query: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 +G+IE LR LRP R+L+LVHRLDRDTSGVL++AKKRS LR+LHEQLREK ++K Y+ALV Sbjct: 121 YGMIENLRILRPYNRYLDLVHRLDRDTSGVLIIAKKRSILRNLHEQLREKKIKKKYVALV 180 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 G W +KS+ PLLK + + IV++ +GK S T F ++++Y TL+ +P+TGR Sbjct: 181 HGVWPDILKSISKPLLKTSSRKNKNIVKIDPKGKESITHFNIKKKYTKNTLISITPITGR 240 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH + +PI D +YG ++ D + +NRL LHA ++ F HP + + I Sbjct: 241 THQIRVHLLHLNYPIVLDAKYGIKKLD-YFIKNKFNINRLLLHAESINFFHPKRKKNILI 299 Query: 301 EAPMDEGLKRCLQKL 315 AP+D K L+ L Sbjct: 300 TAPLDYVFKTVLKNL 314 >UniRef50_C5S931 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=C5S931_CHRVI Length = 346 Score = 365 bits (939), Expect = e-100, Method: Composition-based stats. Identities = 168/314 (53%), Positives = 214/314 (68%), Gaps = 9/314 (2%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 + V + GQRIDNFL LKGVP+S +YR+LR+GEVRVNK R+K EY+L AGD VRI Sbjct: 37 QYVQVDTQADGQRIDNFLLRILKGVPRSHLYRLLRRGEVRVNKGRVKAEYRLCAGDVVRI 96 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 PP+R+ E A +P Q +A L I++ED+ +LV++KPSG AVHGGSGLS+G+IE LR Sbjct: 97 PPIRLGESAPPARAPEAQ-LARLEGAIIHEDERLLVIDKPSGLAVHGGSGLSYGLIESLR 155 Query: 129 ALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHV 188 LRP R LELVHRLDRDTSG L+V K+RSALR LH +RE G+ K YLAL+ G+ Sbjct: 156 QLRPG-RELELVHRLDRDTSGCLVVCKRRSALRELHALIREGGLDKRYLALILGELPRAE 214 Query: 189 KSVQAPLLKNILQSGERIVRVS-QEGKPSETRFKVEERYA----FATLVRCSPVTGRTHQ 243 V APL KN+L SGER+VRV Q GK + TRF+ +R+A TLV +TGRTHQ Sbjct: 215 LLVDAPLKKNVLSSGERLVRVDAQGGKEARTRFRRLKRFAIDGQALTLVEAELITGRTHQ 274 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH + G P+A DD+YGD +++L G GL RLFLHA+AL F +R+E P Sbjct: 275 IRVHAAHLGTPLAGDDKYGDEAANQRLK--GYGLKRLFLHASALSFKLECMARPLRLECP 332 Query: 304 MDEGLKRCLQKLRN 317 + + L++ L L N Sbjct: 333 LPDELQQVLDALEN 346 >UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (class) RepID=B9L028_THERP Length = 322 Score = 364 bits (936), Expect = 2e-99, Method: Composition-based stats. Identities = 102/315 (32%), Positives = 172/315 (54%), Gaps = 21/315 (6%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 ++ I+ E G+R+D + +++ G+ +S + +++++G + VN + KP ++ GD + + Sbjct: 12 VLQISEREHGERLDKLIASRVTGMSRSFVQQLMKRGAILVNGEPCKPAQRVRYGDRLEVY 71 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLR 128 V P + L ++YEDD I+V +KP G H G G + L+ Sbjct: 72 LPPVE-------PPTDLEPEFLPIPVIYEDDDIIVFDKPPGIVTHPAPGHEHGTLVNALK 124 Query: 129 ALRPE-----ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 A+RP+ + +VHRLD+DTSG+L+VAK +A +L EQ + + + K Y ALV G Sbjct: 125 AIRPDLQVQPSHRPGIVHRLDKDTSGLLVVAKTEAARLALLEQWQSRSVVKKYTALVHGV 184 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 + ++ AP+ ++ ++ + + V G+P+ T F+V ER+ ATL+ + TGRTHQ Sbjct: 185 VEPDSGTIDAPISRDPVERTK--MAVVSWGRPAITHFRVLERFRCATLLDVTIETGRTHQ 242 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH + GHP+ D +YG + R FLHA L+F HP TG+ + +E P Sbjct: 243 IRVHCAFIGHPVVGDSQYGGH------RPFCVPVPRQFLHARYLRFVHPTTGQAIELETP 296 Query: 304 MDEGLKRCLQKLRNA 318 + L+ L+ LR+ Sbjct: 297 LPYDLRTVLEALRHC 311 >UniRef50_Q0VQN9 Pseudouridine synthase n=2 Tax=Alcanivorax RepID=Q0VQN9_ALCBS Length = 317 Score = 362 bits (931), Expect = 7e-99, Method: Composition-based stats. Identities = 152/320 (47%), Positives = 204/320 (63%), Gaps = 8/320 (2%) Query: 1 MKTETPS---VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPE 57 M +TP+ V V I GQR+DNFL T LKGVPKS +YRI+R GEVRVNK R K Sbjct: 1 MSEDTPAANRVTFVTIDEGRHGQRLDNFLFTHLKGVPKSRVYRIIRSGEVRVNKGRAKQT 60 Query: 58 YKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGS 117 +L GD VR+PP+R ++ A L +YEDD + V NKP+G AVHGGS Sbjct: 61 TRLCTGDVVRVPPIRTSDSTAPAAVSEGL-AERLRRACVYEDDQLFVFNKPAGLAVHGGS 119 Query: 118 GLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 G+S G+IE LR + P+ R LELVHRLDRDTSG+++VA++RS LR L ++ ++K Y Sbjct: 120 GVSLGLIEALRVMFPQERELELVHRLDRDTSGLIMVARRRSFLRKLQRLMQGGQIEKRYW 179 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPV 237 L +G ++ +++ APLLK ++ ERIVRVS+EGKPS T F++ ER+A A LV + Sbjct: 180 LLCQG-FKGKERTLDAPLLK-MMNGNERIVRVSREGKPSVTHFRLLERFAQAQLVEATLE 237 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQIRVH+Q+ G + D +YG + + L E G RL LHA L F HP TG+ Sbjct: 238 TGRTHQIRVHSQFGGFALLGDSKYGIAKGEALLAEIGR--RRLCLHARTLVFVHPNTGKR 295 Query: 298 MRIEAPMDEGLKRCLQKLRN 317 + + AP+D+ + L LR+ Sbjct: 296 LTVTAPLDDDYEAILTALRS 315 >UniRef50_Q126H9 Pseudouridine synthase n=1 Tax=Polaromonas sp. JS666 RepID=Q126H9_POLSJ Length = 378 Score = 361 bits (927), Expect = 2e-98, Method: Composition-based stats. Identities = 156/335 (46%), Positives = 212/335 (63%), Gaps = 32/335 (9%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 +V + D AGQR+DNFL LKGVPK+ +YRI+R GEVR+NK R + + +LEAGD VR+P Sbjct: 30 LVTVDEDYAGQRLDNFLIRHLKGVPKTHVYRIIRSGEVRINKGRAQADTRLEAGDIVRLP 89 Query: 70 PVRVAEREEEAVSPHLQKVA-------------ALADVILYEDDHILVLNKPSGTAVHGG 116 PVR +ER ++ ++VA + +L+EDD +L ++KP+G AVHGG Sbjct: 90 PVRTSERADQKAQAMAEEVARHGASSTVGGYAPSREFPVLFEDDFLLAIDKPAGVAVHGG 149 Query: 117 SGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDY 176 SG+SFGVIE LR RP+A FLELVHRLDR+TSG+LL+AK+R AL+ L EQ RE+ K Y Sbjct: 150 SGVSFGVIEQLRMARPQADFLELVHRLDRETSGILLIAKRRMALKLLQEQFRERETDKVY 209 Query: 177 LALVRGQWQSHVKSVQAPLLKNILQ----SGERIVRV----SQEGKPSETRFKVEERYAF 228 LALV G W ++ + + L K +L GER V+V +G S T KV+ +A Sbjct: 210 LALVSGNWPANHRVIDKALHKYLLPGGAGEGERRVKVVPNDHPDGMRSVTLVKVKSAFAA 269 Query: 229 --------ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEA---GTGL 277 TL+ + TGRTHQIRVH GHPIA DD+YGD E ++ L ++ G L Sbjct: 270 LPAAPGTPFTLLEVTIKTGRTHQIRVHLANEGHPIAGDDKYGDFELNKSLQKSVAGGAPL 329 Query: 278 NRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCL 312 R+FLHA +LKF HP T + + +E P+ + L++ L Sbjct: 330 KRMFLHAWSLKFNHPKTRKTIHLETPLPDELQQFL 364 >UniRef50_D0L1K7 Pseudouridine synthase n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1K7_HALNC Length = 346 Score = 360 bits (926), Expect = 2e-98, Method: Composition-based stats. Identities = 146/320 (45%), Positives = 196/320 (61%), Gaps = 10/320 (3%) Query: 6 PSVKIVAITADEAGQRIDNFLRTQLK----GVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 SV+ V + A AGQRIDNFL +L VP+S+IYRILR GEVRVN +R KP +L Sbjct: 17 QSVRRVTVDAHYAGQRIDNFLLRELGATHGEVPRSLIYRILRTGEVRVNSQRAKPTTRLA 76 Query: 62 AGDEVRIPPVRVAER-EEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 GDEVRIPP+++ +E A +A AD+I+YED+ +L +NKP+G AVHGGS + Sbjct: 77 TGDEVRIPPLKLQSPSQESAGVISANWLARAADMIVYEDEALLAVNKPAGLAVHGGSNIP 136 Query: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLR-EKGMQKDYLAL 179 FG+IE +R LEL HR+DRDTSG+L++AK R+ L SL Q R E +K YLA+ Sbjct: 137 FGLIELMRQHTGLGEKLELAHRIDRDTSGLLILAKTRATLHSLQTQFRPEGHAEKQYLAI 196 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTG 239 V G W +K V APL K + V+V+ +GK + T F V ATL+R TG Sbjct: 197 VHGHWPDKLKRVDAPLEKWQGEGESHRVQVNPQGKEAVTHFAVLAANKNATLLRAQLETG 256 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNR----LFLHAAALKFTHPGTG 295 RTHQIRVHT + HPI D++YG RE+D++L + R L LHA L THP T Sbjct: 257 RTHQIRVHTAHENHPIVGDEKYGQREWDKRLFPSTGASARRRPPLLLHAYRLMLTHPQTE 316 Query: 296 EVMRIEAPMDEGLKRCLQKL 315 + +++ AP+ + + Q+L Sbjct: 317 QPLQLTAPIPDKWRSLAQQL 336 >UniRef50_A0L8J2 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8J2_MAGSM Length = 328 Score = 360 bits (926), Expect = 3e-98, Method: Composition-based stats. Identities = 132/322 (40%), Positives = 195/322 (60%), Gaps = 10/322 (3%) Query: 3 TETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEA 62 ++ +V+ V + + AG R+D FL++Q VP S+I R++R G+VRVNK R + + +L Sbjct: 5 SKPTAVRTVQVDEEYAGSRLDKFLKSQFPSVPFSLIQRLMRTGQVRVNKGRARGDRRLAF 64 Query: 63 GDEVRIPPVRVAEREEEAVSPHLQKVAALADVI----LYEDDHILVLNKPSGTAVHGGSG 118 GD VR+PPV EE P+ +K+ + + L+ D ILVLNKP+G VHGGSG Sbjct: 65 GDWVRLPPV-TPPTAEELEHPNKEKILHQSADVEARTLHRDGWILVLNKPAGIPVHGGSG 123 Query: 119 LSFGVIEGLRALRPE---ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKD 175 +GV++ +RA + EL HRLD++TSG+LL + A+R L E +RE + K Sbjct: 124 HQWGVVDAVRASLEKLGIEAQAELCHRLDKETSGLLLFGLRPRAVRLLTEAMRENQVTKT 183 Query: 176 YLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCS 235 YL LV+G + + PL K ++ GER+V V Q G+ + T ++V Y A+L+ Sbjct: 184 YLTLVQGVPAARQGVINQPLSKGNVRGGERMVVVEQGGQRAVTHYRVLRSYGVASLLEVQ 243 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTG 295 TGRTHQIRVH Q+ GHP+A D +YGD+ F++ + E GL RLFLHA+ L F HP Sbjct: 244 LETGRTHQIRVHMQWLGHPVAGDGKYGDKAFNKWMRER--GLKRLFLHASELAFRHPENE 301 Query: 296 EVMRIEAPMDEGLKRCLQKLRN 317 + + +AP+D+ L R L+ L+ Sbjct: 302 QKLAYQAPLDDELTRVLEGLKR 323 >UniRef50_Q3JQ55 Pseudouridine synthase n=170 Tax=cellular organisms RepID=Q3JQ55_BURP1 Length = 477 Score = 360 bits (926), Expect = 3e-98, Method: Composition-based stats. Identities = 154/318 (48%), Positives = 195/318 (61%), Gaps = 6/318 (1%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 V ++ I AGQRIDNFL KGVPKS IYRILR GEVRVNK RI +Y+L GD Sbjct: 158 QVSLIEIDESAAGQRIDNFLLRVCKGVPKSHIYRILRSGEVRVNKGRIDAQYRLAFGDV- 216 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 P + A + V A IL+EDD I+VLNKP+G AVHGGSG++FGVIE Sbjct: 217 VRVPPVRVAAADLARAAGPAPVPAAEFEILFEDDAIIVLNKPAGVAVHGGSGVAFGVIEQ 276 Query: 127 LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 +R RP A+FLEL HRLDR+TSG+L++AKKRSAL LHEQ+RE M K Y A V G W + Sbjct: 277 MRHARPHAKFLELAHRLDRETSGILMLAKKRSALVGLHEQIRENRMDKRYFACVHGDWAA 336 Query: 187 HVK---SVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 V+APL K GER VRV ++G PS T F + +R+ LV TGRTHQ Sbjct: 337 DWGRRRVVKAPLFKYATPDGERRVRVQEDGLPSHTVFNLVDRWPDYALVEAELKTGRTHQ 396 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAG--TGLNRLFLHAAALKFTHPGTGEVMRIE 301 IRVH + G PI D +YGD ++ L A + R+FLHA L+ HP TGE ++ + Sbjct: 397 IRVHLAHLGLPIVGDAKYGDFALNKALARANAVPSIKRMFLHAHRLRLAHPLTGEPLQFD 456 Query: 302 APMDEGLKRCLQKLRNAR 319 AP+ ++ + +L + R Sbjct: 457 APLPAECRQFIDQLSDLR 474 >UniRef50_Q0A8Q9 Pseudouridine synthase n=4 Tax=Ectothiorhodospiraceae RepID=Q0A8Q9_ALHEH Length = 327 Score = 360 bits (925), Expect = 3e-98, Method: Composition-based stats. Identities = 162/313 (51%), Positives = 206/313 (65%), Gaps = 6/313 (1%) Query: 4 ETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAG 63 V+ V I ++AGQR+DNFL QLKGVP+S+IYR+LR G+VRV+ KR KP +L G Sbjct: 11 SMSGVRQVRIGPEDAGQRVDNFLMRQLKGVPRSLIYRLLRSGQVRVDGKRTKPPRRLATG 70 Query: 64 DEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV 123 + VRIPPV+ R + +P + LA ILYEDD +LV++KPSG AVHGGSGL++G+ Sbjct: 71 ETVRIPPVQT--RAPQEATPPARLQGELAQRILYEDDRLLVIDKPSGLAVHGGSGLAWGL 128 Query: 124 IEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 IE LR RP A FLELVHRLDR TSG L+VAK+RSALR LHEQLR + K YLAL+ G Sbjct: 129 IEVLRQARPSAPFLELVHRLDRATSGCLMVAKRRSALRELHEQLRTGAVHKRYLALLTGA 188 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 V+APL + +G VRV+ GK + T F+ R TL TGRTHQ Sbjct: 189 LGRGPIPVEAPLERRSGPAGG--VRVASHGKLARTVFRAVARPGGMTLAEADIATGRTHQ 246 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH + G PIA DDRYG+R +R+L G GL RLFLHA L+ + PGTG+ + IEAP Sbjct: 247 IRVHAAHLGMPIAGDDRYGERAVNRRLR--GLGLKRLFLHAHRLELSAPGTGQPLSIEAP 304 Query: 304 MDEGLKRCLQKLR 316 + + L + +L+ Sbjct: 305 LPDELAAVVAQLQ 317 >UniRef50_Q492Q1 Pseudouridine synthase n=2 Tax=Candidatus Blochmannia RepID=Q492Q1_BLOPB Length = 338 Score = 359 bits (923), Expect = 7e-98, Method: Composition-based stats. Identities = 173/320 (54%), Positives = 230/320 (71%), Gaps = 6/320 (1%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 MK +V + I+++ +GQRIDNFL T LK PKSMIY+I+R G +R+NKKRIK +YKL Sbjct: 1 MKEHDINVHFIRISSNSSGQRIDNFLYTYLKVAPKSMIYKIIRTGAIRINKKRIKFQYKL 60 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 + GD +RIPP+R + + ++++VA L ++I+YEDD++L LNKP+G A HGGSGL Sbjct: 61 QIGDLLRIPPIRGIKINRFNMK-YMEEVAFLQNIIIYEDDYLLALNKPTGVAAHGGSGLK 119 Query: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 FGVIEGLRALRP+A+FLELVHRLDR+TSGVLLVAK+R+AL LHEQLR + M+K+YLALV Sbjct: 120 FGVIEGLRALRPKAQFLELVHRLDRETSGVLLVAKRRTALVYLHEQLRLQNMKKEYLALV 179 Query: 181 RGQWQSHVKSVQAPL-LKNILQSGERIVRV-SQEGKPSETRFKVEERYAF-ATLVRCSPV 237 G+W +++ V PL KN L + R+V + S+ GK S T F+++E + AT + P+ Sbjct: 180 HGRWNVNLQIVSVPLFKKNTLLNSSRVVYIDSENGKFSTTHFQIKEYFDNVATFLAIKPI 239 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQIRVHTQYA HPI D+RYGD + + + G NRLFLHA+ L+F HP T + Sbjct: 240 TGRTHQIRVHTQYASHPIVGDNRYGDYQSNTRFKR--FGFNRLFLHASILRFIHPKTKKK 297 Query: 298 MRIEAPMDEGLKRCLQKLRN 317 I AP+ + CL LRN Sbjct: 298 FHIHAPLGQSFHNCLFFLRN 317 >UniRef50_Q82WZ5 Ribosomal large subunit pseudouridine synthase D n=2 Tax=Nitrosomonas RepID=RLUD_NITEU Length = 344 Score = 357 bits (918), Expect = 2e-97, Method: Composition-based stats. Identities = 102/320 (31%), Positives = 167/320 (52%), Gaps = 14/320 (4%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 E + + + + AG R+D L L +S + + + V V+ + K+ Sbjct: 25 SQENENTIELTVPDNLAGLRLDQALAQLLPQWSRSRLQGWIEQKCVSVDSAAATCKQKVW 84 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 G+ +R+ + + A+ IL+EDDH+++++KP+G VH G+G Sbjct: 85 GGESIRVIAGQTENDQSHQ-------AEAIPLKILFEDDHLIIIDKPAGLVVHPGNGNWH 137 Query: 122 GVI-EGLRALRPE---ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 G + L P+ +VHRLD+DT+G+L+VAK A L QL+++ +++ YL Sbjct: 138 GTLLNALLNHAPQLSQVPRAGIVHRLDKDTTGLLVVAKTIEAQFDLARQLQQRTVKRHYL 197 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPV 237 ALV G+ + V AP+ ++ + + V Q GKP+ T ++V E++ +TL+ CS Sbjct: 198 ALVLGKLEKD-GVVDAPIGRHPIHRTR--MAVVQNGKPARTHYRVLEKFTASTLLHCSLE 254 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQIRVH GHP+A D YG D +A L R LHA L+ THP +G++ Sbjct: 255 TGRTHQIRVHLLSIGHPLAGDPVYGRTSPDPSTADAVVRLPRQALHAWQLELTHPHSGQI 314 Query: 298 MRIEAPMDEGLKRCLQKLRN 317 + E+P+ + + LQ +RN Sbjct: 315 LLWESPLPDDMAALLQAIRN 334 >UniRef50_Q21K97 Pseudouridine synthase n=10 Tax=Gammaproteobacteria RepID=Q21K97_SACD2 Length = 321 Score = 356 bits (914), Expect = 8e-97, Method: Composition-based stats. Identities = 170/312 (54%), Positives = 214/312 (68%), Gaps = 6/312 (1%) Query: 6 PSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDE 65 +V+ + ++ DEAGQR+DN+L +LKGVPKS+IYR++RKGEVRVNK R KPE KL GD Sbjct: 3 QNVQFLTVSEDEAGQRLDNYLLARLKGVPKSLIYRVIRKGEVRVNKGRAKPERKLAGGDV 62 Query: 66 VRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIE 125 VR+PPVRVAE E V L + ++ ++ LV+NKP+G AVHGGSG++ G+IE Sbjct: 63 VRVPPVRVAE-SPEPVPISKTLKGVLDNAVIADEPGYLVVNKPAGLAVHGGSGVTLGLIE 121 Query: 126 GLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLR-EKGMQKDYLALVRGQW 184 LR P+ +LELVHRLDRDTSG +LVAKKRS LR L E R EK + K YLALV G+W Sbjct: 122 ALRQAFPQYSYLELVHRLDRDTSGCILVAKKRSMLRYLQELFRGEKRIHKRYLALVIGRW 181 Query: 185 QSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF-ATLVRCSPVTGRTHQ 243 S V APLL+ LQSGERIVRVS +GKPS+T F V +R+ ATLV P+TGRTHQ Sbjct: 182 PSRRNLVDAPLLRKELQSGERIVRVSLDGKPSKTEFNVVQRFGESATLVEARPITGRTHQ 241 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH Q+ GHP+ D +YG+ FD L+ G+NRLFLHAA L F + GE + IE P Sbjct: 242 IRVHAQHQGHPLVGDPKYGNEVFD--LSVKKLGVNRLFLHAAGLSFKN-ADGEQVNIEVP 298 Query: 304 MDEGLKRCLQKL 315 + L+ + Sbjct: 299 LPAELQSVVAAF 310 >UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides RepID=D2BIX0_DEHSV Length = 302 Score = 356 bits (914), Expect = 8e-97, Method: Composition-based stats. Identities = 106/318 (33%), Positives = 160/318 (50%), Gaps = 26/318 (8%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 VK + A+ G+R+D ++ + + +S I ++ G V+VN K KP KL+ GD + Sbjct: 2 PVKTRRLIAESDGERLDKYIAQKETDLSRSFIQALIDSGHVQVNGKTAKPSLKLKNGDTI 61 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-E 125 I E +P K + I+++D +L++NKP G VH G + Sbjct: 62 TI--------EISPETPPELKAEDIPLEIIFQDKDLLLINKPPGLTVHPAPGHPDHTLIN 113 Query: 126 GLRALRP------EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 G+ AL P + +VHRLD+DTSG+LLVAK R L +L Q +E+ ++K YL L Sbjct: 114 GVLALEPKMEDFDDPLRPGIVHRLDKDTSGLLLVAKNRETLANLSAQFKERTVRKYYLTL 173 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTG 239 V+G+ ++APL ++ + + V G+ + T +KV +L+ TG Sbjct: 174 VKGELHPAEGFIEAPLGRDPQ--NRQKIAVVSNGRHARTGYKVLRYIQGYSLLEVKLETG 231 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RTHQIRVH GHP+A D YG +E T L R FLHA L FT P G+ + Sbjct: 232 RTHQIRVHFAAIGHPVAGDAIYGQKE---------TWLKRQFLHAHRLSFTLPSNGQTVE 282 Query: 300 IEAPMDEGLKRCLQKLRN 317 +P+ L+ L+ L N Sbjct: 283 FTSPLPPDLEETLKILEN 300 >UniRef50_A3Y8C6 Pseudouridine synthase n=1 Tax=Marinomonas sp. MED121 RepID=A3Y8C6_9GAMM Length = 322 Score = 355 bits (911), Expect = 1e-96, Method: Composition-based stats. Identities = 157/314 (50%), Positives = 213/314 (67%), Gaps = 6/314 (1%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 + + P VKI I + QRIDN+L QLKGVPK IY +LRKGE+RVNKKR+KP+ ++ Sbjct: 8 ENDRPKVKINTIDENNHDQRIDNYLMAQLKGVPKGRIYNLLRKGEIRVNKKRVKPDTRIY 67 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 +GD VRI P+ V +E + PH + + + I+YED ++V+NKPSG AVHGGSGL+F Sbjct: 68 SGDIVRIAPIVVEPPKEASPVPH-KLMQLIESRIVYEDAGLMVVNKPSGLAVHGGSGLNF 126 Query: 122 GVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG-MQKDYLALV 180 G++E +R LR + + +ELVHRLDRDTSG+++++KKRS L+ LH LREK +QK Y ALV Sbjct: 127 GLVEVVRQLRSKEKSIELVHRLDRDTSGLIMISKKRSVLKQLHAALREKEGVQKTYQALV 186 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 G W + V APLLKN L+SGERIV+V EGK S TRFK+ ++ +LV C PVTGR Sbjct: 187 YGSWPKRKQQVNAPLLKNELKSGERIVKVHTEGKESLTRFKLLRQFEGYSLVECEPVTGR 246 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVHT +AG+PI DD+Y E +++ G G RL LHAA L + + + Sbjct: 247 THQIRVHTLHAGYPIVGDDKYSPSEQNKEAK--GLGFKRLCLHAAKLDIM--LNDQRILV 302 Query: 301 EAPMDEGLKRCLQK 314 E P+D+ + + + Sbjct: 303 EVPIDDEWRNAMNQ 316 >UniRef50_C9KPZ8 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPZ8_9FIRM Length = 308 Score = 353 bits (908), Expect = 4e-96, Method: Composition-based stats. Identities = 101/310 (32%), Positives = 158/310 (50%), Gaps = 22/310 (7%) Query: 14 TADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRV 73 TAD+ G+R+D FL + ++ + +++ +G+ V+ + K YKL+AG++V + Sbjct: 9 TADQDGERLDRFLTRMEPTLSRAHVQKVIAEGQALVSGRVRKANYKLQAGEKVTF---HL 65 Query: 74 AEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR-- 131 E + + P + ILYED I+V+NK G VH +G+ G + Sbjct: 66 PEAKPVEILPE-----DIPLDILYEDSDIIVINKARGMVVHPATGIYTGTLVNALLYHCK 120 Query: 132 -----PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 +VHRLD+DTSGV++ AK +A L EQ+R K + Y A+V G + Sbjct: 121 DLSGINGEIRPGIVHRLDKDTSGVMVAAKNDAAHLDLAEQIRTKAAHRIYRAIVCGNIRE 180 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 ++ + ++ +++ V + GKP+ T F+V ER+ TLV C TGRTHQIRV Sbjct: 181 EAGVIKGDIGRHPTDR-KKMAIVHEHGKPAVTHFRVLERFGAYTLVECRLETGRTHQIRV 239 Query: 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDE 306 H GHP+ D +YG R+ + LH+ L THP T EVM AP+ E Sbjct: 240 HMASIGHPVLGDPKYGPRK------ACPFAIKGQALHSLQLTLTHPRTREVMTFTAPLPE 293 Query: 307 GLKRCLQKLR 316 +++ L+ LR Sbjct: 294 DMEKILKALR 303 >UniRef50_B0U5V6 Pseudouridine synthase n=7 Tax=Xylella fastidiosa RepID=B0U5V6_XYLFM Length = 330 Score = 352 bits (903), Expect = 1e-95, Method: Composition-based stats. Identities = 156/320 (48%), Positives = 216/320 (67%), Gaps = 11/320 (3%) Query: 4 ETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAG 63 E SV+IV + A+ +GQR+DNFL ++LKGVP+S+IY+++R G+VRVN R+K E KL+ G Sbjct: 14 ECFSVRIVVVPAEHSGQRLDNFLLSKLKGVPRSLIYKLVRSGQVRVNGGRVKAERKLDGG 73 Query: 64 DEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV 123 DEVR+PP+R+ ++ V+P +A + I++ED +L LNKPSG A HGGSG+S+GV Sbjct: 74 DEVRLPPLRLI-QDRAIVAPSAAFLARMEAAIVFEDARLLALNKPSGMASHGGSGVSYGV 132 Query: 124 IEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRE--------KGMQKD 175 IE +R LRP+ + LELVHRLDRDTSG+L++AKKR+AL L +RE +G+ K Sbjct: 133 IEAMRILRPK-QELELVHRLDRDTSGLLIMAKKRAALIELQALMREASVNGKEGRGIAKR 191 Query: 176 YLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCS 235 YL L+ G+ + V SV APL N+ GER VRV +GKPS++RF++ ER + Sbjct: 192 YLTLLSGRMPNGVMSVDAPLHINLRHGGERHVRVHHDGKPSKSRFRLLERRGGQSYCEVL 251 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTG 295 TGRTHQIRVH Q+ GHP+ DD+YGD+E +R+L + GL RLFLHA +L+F Sbjct: 252 IETGRTHQIRVHAQHLGHPVTGDDKYGDQEVNRKLRDQI-GLQRLFLHAVSLEFALDAGS 310 Query: 296 EVMRIEAPMDEGLKRCLQKL 315 + AP+ E L L +L Sbjct: 311 TPYVLNAPLAEDLVAALDRL 330 >UniRef50_B8FLB4 Pseudouridine synthase n=2 Tax=Bacteria RepID=B8FLB4_DESAA Length = 321 Score = 351 bits (901), Expect = 2e-95, Method: Composition-based stats. Identities = 105/319 (32%), Positives = 158/319 (49%), Gaps = 19/319 (5%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + E GQR+D F+ K + ++ R++R+G V V+K KP Y L+ G+ V + Sbjct: 9 FKVQNKEQGQRLDAFVPVHCKNLSRNACARLIRQGLVTVDKSVKKPSYVLKPGEMVSV-- 66 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRA 129 V E E + + ILYED I+ +NKP G VH G S + L A Sbjct: 67 -TVPEPETADIV-----AQDMDLAILYEDRDIVAVNKPPGMVVHPAPGHSSNTLVNALLA 120 Query: 130 LR------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 + +VHRLD++TSGV+L AK +A L EQL ++ ++K YLAL G Sbjct: 121 HCKDLSGIGGVQRPGIVHRLDKETSGVILAAKNDAAHAGLSEQLAQRRVEKFYLALAHGV 180 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 + + PL ++ V +G+ + + + V+ER+ AT V+ TGRTHQ Sbjct: 181 IKEDTGVIDLPLARHPSDRKRMHVSTPAKGREALSLWTVKERFLDATYVKVQIKTGRTHQ 240 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTG----LNRLFLHAAALKFTHPGTGEVMR 299 IRVH HP+ D YG R+ +L + G R LHA + FTHP TGE + Sbjct: 241 IRVHLAALHHPVIGDTVYGGRKKRGRLPASVLGKAPPPERQMLHAHIVSFTHPVTGEKLT 300 Query: 300 IEAPMDEGLKRCLQKLRNA 318 + AP+ + + + L+ LR + Sbjct: 301 LTAPLPQDMAQLLEALRES 319 >UniRef50_Q2LWV4 Pseudouridine synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LWV4_SYNAS Length = 333 Score = 350 bits (900), Expect = 3e-95, Method: Composition-based stats. Identities = 107/330 (32%), Positives = 166/330 (50%), Gaps = 23/330 (6%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKR-IKPEYK 59 MK P ++ +TA E+G R+D FL + G ++ + R++ G V ++ K I+ K Sbjct: 1 MKGVAP-LREYRVTATESGLRLDLFLASHESGFSRARLQRLIESGRVTISGKAAIRASQK 59 Query: 60 LEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGL 119 L GD V + EE +P + ILYED +LVL+KP+G VH +G Sbjct: 60 LRTGDIVML--------EEPPATPLELIPQDIPLSILYEDHDLLVLDKPAGLVVHPAAGH 111 Query: 120 SFGVIEGLRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGM 172 G + +VHRLD+DTSG+L+VAK +A + L Q ++ + Sbjct: 112 VSGTLVNALLFHCRDLAGIGGVMRPGIVHRLDKDTSGLLVVAKTDAAHQGLALQFKKHQV 171 Query: 173 QKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLV 232 K Y ALV G + + P+ ++ ++ +++ S+ GK + TR+++ ER+ ATL+ Sbjct: 172 GKTYQALVYGDPREKTGQIDLPVGRHPVER-KKMSTKSRRGKEAATRWRIAERFGVATLL 230 Query: 233 RCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAG-----TGLNRLFLHAAAL 287 VTGRTHQIRVH GHP+ D YG + LT+ ++R LHAA L Sbjct: 231 NVDIVTGRTHQIRVHLAAIGHPVVGDAVYGSSKRATTLTDPAVKGRLKEMSRQALHAARL 290 Query: 288 KFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 FTHP T +++ AP+ ++ LR Sbjct: 291 SFTHPVTHKILEFHAPLPADMEDLCAFLRK 320 >UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PCC3_9BACT Length = 387 Score = 350 bits (900), Expect = 3e-95, Method: Composition-based stats. Identities = 98/326 (30%), Positives = 153/326 (46%), Gaps = 26/326 (7%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 V + A++ RID +L ++ ++ I + G + VN K +K YK+ D V + Sbjct: 56 VQVDANQDPVRIDKYLADKMAYQSRNRIQQAADAGFIHVNGKPVKSNYKVRPNDLVTLML 115 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 R R E ++ P +A ++YEDD ++V+NK +G VH G+G G + A Sbjct: 116 DR--PRHETSIKPE-----EIAINVVYEDDQLMVVNKEAGMVVHPGAGNFHGTLIQAVAW 168 Query: 131 R--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 + LVHR+D+DTSG+L+VAK +A +L +Q K + Y ALV G Sbjct: 169 HLRDMPEFDANDPEVGLVHRIDKDTSGLLVVAKTPTAKNALGKQFFNKTTHRSYNALVWG 228 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEG--KPSETRFKVEERYAFATLVRCSPVTGR 240 ++ + ++ V G K + T +KV ER+ + TLV+C TGR Sbjct: 229 NIVEDEGRIEGNIGRDPKNRLRMKVFDPDSGIGKTAVTHYKVLERFGYTTLVQCVLETGR 288 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTG---------LNRLFLHAAALKFTH 291 THQIR H ++ GHP+ D+ YG E R + R LHA L F H Sbjct: 289 THQIRAHMKHIGHPLFMDETYGGTEILRGQRSSSYKAFIQNCFKLCPRQALHAKTLGFVH 348 Query: 292 PGTGEVMRIEAPMDEGLKRCLQKLRN 317 P T + M ++ ++ ++K R Sbjct: 349 PTTKQQMDFDSEWPNDFRQLIEKWRG 374 >UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae RepID=A9BFW4_PETMO Length = 319 Score = 350 bits (898), Expect = 4e-95, Method: Composition-based stats. Identities = 101/320 (31%), Positives = 164/320 (51%), Gaps = 21/320 (6%) Query: 9 KIVAITADEAGQRIDNFLRTQLK-GVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 ++ + ++ +R+D ++ ++ + +++I + KG++ VN + KP YK++ GDE++ Sbjct: 4 RMYKVEREDEQKRLDIYIAQKMPIEISRNLIQNAITKGQITVNGSQKKPHYKVKQGDEIQ 63 Query: 68 IPPVR-VAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 I V E +EE + P + ILYED+ ++V+NKP+G VH + G + Sbjct: 64 IDFHELVEETKEENILPE-----NIPLNILYEDEELIVINKPAGLIVHPTPSIKTGTLVN 118 Query: 127 LRALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLA 178 + L +VHRLD++TSGVL+VAK + L ++ +E+ K YLA Sbjct: 119 ALMHHVKDLDKTMQDPNRLGIVHRLDKETSGVLVVAKNAFSHHLLSKEFKERKTMKYYLA 178 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF-ATLVRCSPV 237 +V G + + PL ++ + +R V GK + T +K + + ATLV Sbjct: 179 IVEGTLKEKEGEINLPLGRHPILRHKRAVVY--NGKEAITEYKTLKEFGDLATLVWIRLR 236 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQIRVH +Y G+P+ D YG + ++ L + R LHA L F HP T E Sbjct: 237 TGRTHQIRVHFKYIGNPLIGDSLYGKNKIEKNL---QIPVGRQMLHALKLGFYHPKTKEW 293 Query: 298 MRIEAPMDEGLKRCLQKLRN 317 M AP+ + K L L N Sbjct: 294 MEFLAPLPDDFKNLLITLTN 313 >UniRef50_Q2SK59 Pseudouridine synthase n=3 Tax=Gammaproteobacteria RepID=Q2SK59_HAHCH Length = 315 Score = 349 bits (897), Expect = 6e-95, Method: Composition-based stats. Identities = 158/299 (52%), Positives = 206/299 (68%), Gaps = 3/299 (1%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 ++V I + GQR+DNFL +LKGVPK IY+I+RKGEVR+NK R KPE KL+ GD+VRI Sbjct: 13 RVVTIDSGSDGQRLDNFLVRELKGVPKGKIYKIIRKGEVRINKGRCKPETKLKDGDQVRI 72 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 PP+RV+E + + ++ L+E+D +L++NKP G AVHGGSG+SFGVIE LR Sbjct: 73 PPIRVSEGDSLEPVIPAGLIELVSQSTLFENDELLIINKPCGVAVHGGSGVSFGVIEILR 132 Query: 129 ALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHV 188 A R + RFLEL HRLDRDTSGVL++AKKR AL H+ L+ ++K Y A V G+W H Sbjct: 133 AARQDIRFLELAHRLDRDTSGVLVLAKKRRALVQFHDMLKTGRVEKIYHAWVCGKWPKHK 192 Query: 189 KSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHT 248 + APL KN+L+SGER+V VS++GKPSETRF+V A TLV P+TGRTHQIRVH Sbjct: 193 SVITAPLKKNVLRSGERMVNVSEDGKPSETRFRVLYSGAGRTLVEAQPITGRTHQIRVHA 252 Query: 249 QYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEG 307 ++AGHPI DD+Y D E +R + G+ RL LHA +L+ + P E +I DE Sbjct: 253 KFAGHPIIGDDKYCDSETNRVYRDM--GVKRLCLHAYSLRMSWPDRPEQ-KIVCEWDED 308 >UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A7HM17_FERNB Length = 314 Score = 349 bits (897), Expect = 7e-95, Method: Composition-based stats. Identities = 104/316 (32%), Positives = 163/316 (51%), Gaps = 21/316 (6%) Query: 11 VAITADEAGQRIDNFLRTQLKG-VPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 + +T+ E G R+D F+ + + ++ I R ++ GEV VN KP YK+++GD + + Sbjct: 3 IQVTSRENGWRLDKFVMEKTPEWISRTFIQRAIKNGEVLVNGTSKKPSYKVKSGDIITLN 62 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLR 128 E E + I+YED ILV+NK G H + G I G+ Sbjct: 63 APEAPEIPE-------ILPEDIPLDIIYEDRDILVINKQPGIITHPIPSHTSGTIVNGVL 115 Query: 129 ALRPEARF------LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 + + +VHRLD+DTSGV+++AK A +SL +Q +++ +K Y+ LV+G Sbjct: 116 YHCKDLQGIGGVLRPGIVHRLDKDTSGVMVIAKNDLAHQSLTKQFKDRLTEKLYICLVKG 175 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF-ATLVRCSPVTGRT 241 + ++ + +N + + V S+ GKP+ T +KV + A LV P TGRT Sbjct: 176 VPKRKEGDIEINIARNPVLRVKMTVTNSEYGKPALTHYKVVREFGDIAALVFAYPKTGRT 235 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVH +Y GHP+ D+ YG R + G+ R LHA +L F HP TGE ++ Sbjct: 236 HQIRVHMKYIGHPLMGDEVYG-----RAKEDEIFGIKRQMLHALSLSFYHPRTGEKVKFI 290 Query: 302 APMDEGLKRCLQKLRN 317 A + + K +QKL + Sbjct: 291 AKIPQDFKEAIQKLDD 306 >UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B0TGQ0_HELMI Length = 369 Score = 349 bits (896), Expect = 9e-95, Method: Composition-based stats. Identities = 100/325 (30%), Positives = 158/325 (48%), Gaps = 26/325 (8%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 +++ P + + +T EA R+D +L + +S +++G V ++ +K Y+L Sbjct: 28 VESRRPELVRLTVTPAEADSRVDVWLVQKGLVPSRSHGQNWIKEGLVTLDGGPLKANYRL 87 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 GD + + P E + I+++D I V+NKP+G VH G Sbjct: 88 RPGDVIEVAPPAPEAVEILP--------EDIPLEIIFQDADIAVINKPAGLVVHPAEGHW 139 Query: 121 FGVIEGLRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQ 173 G + +VHR+D+DTSG+L+VAK A L EQ+++ ++ Sbjct: 140 SGTLVNALLYHIKDLSGINGELRPGIVHRIDKDTSGLLVVAKNDRAHIHLTEQVKDHRVR 199 Query: 174 KDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY--AFATL 231 ++YLA+V G + V+AP+ ++ + V GK + T F+V RY +L Sbjct: 200 REYLAVVHGVIGAETGRVEAPIGRDPKDRQR--MAVIAGGKSAITHFRVLARYPEQGFSL 257 Query: 232 VRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTH 291 + C TGRTHQIRVH + GHP+A D +YG R +A GL LHA L+F H Sbjct: 258 LHCRLETGRTHQIRVHLAHIGHPVAGDPKYGPR-------KAAFGLTGQALHAWKLEFVH 310 Query: 292 PGTGEVMRIEAPMDEGLKRCLQKLR 316 P +GE MR +A E + LQ L+ Sbjct: 311 PRSGEPMRFQADPPEPFVQVLQALQ 335 >UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FYR8_ABIDE Length = 326 Score = 348 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 96/325 (29%), Positives = 159/325 (48%), Gaps = 32/325 (9%) Query: 5 TPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGD 64 + V +++ ++++G+RID +L +L +S + ++ +G+VRV K +K +K+ G Sbjct: 19 SDEVIELSVVSEDSGERIDKYLSGKLTEYSRSYLKGLIDEGKVRVEGKPVKSSFKVTEGI 78 Query: 65 EVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI 124 + I V E E + ILYED+ ++++NKP G VH +G G + Sbjct: 79 NISISIPPVKEAEIIP--------ENIPLDILYEDEDVILINKPKGMVVHPAAGHYTGTL 130 Query: 125 ---------EGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKD 175 + L + E R +VHR+D DT+GV++ K + R + EQL+E +++ Sbjct: 131 VNALMYHCRDNLSGINGELR-PGIVHRIDMDTTGVIIACKNDVSHRIIAEQLKEHSIKRK 189 Query: 176 YLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY-----AFAT 230 Y A+V G ++ ++ + ++ + + V +GKP+ T ++V Y Sbjct: 190 YQAIVYGVFKDEEGRIEGSIGRSKTD--RKKMAVIPDGKPAVTHYRVIRNYTSPNGNNFA 247 Query: 231 LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFT 290 + C TGRTHQIRVH GHP+ D+ YG + L+ LHA L F Sbjct: 248 HIECELETGRTHQIRVHMTSIGHPLLGDEIYG-------AAKNPFKLDGQALHAEMLGFV 300 Query: 291 HPGTGEVMRIEAPMDEGLKRCLQKL 315 HP TGE M AP+ E + L KL Sbjct: 301 HPRTGEYMEFHAPLPEYFSKLLTKL 325 >UniRef50_Q9JVB6 Ribosomal large subunit pseudouridine synthase D n=39 Tax=Proteobacteria RepID=RLUD_NEIMA Length = 374 Score = 348 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 109/322 (33%), Positives = 166/322 (51%), Gaps = 16/322 (4%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 +ET + + + + AG R+D L L +S + +++G V VN K +P+ K+ Sbjct: 21 ASETENRIGLTVPLELAGGRLDAVLAKLLPDYSRSRLTLWIKEGAVIVNDKPSQPKDKMI 80 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 G+++R+ E A P +A I+YEDD ++V+NKP+G VH +G Sbjct: 81 GGEQIRV--TVRPSEENLAFVPE-----PMALDIVYEDDTVIVVNKPAGLVVHPAAGNWT 133 Query: 122 GVI-EGLRALRPEARFL---ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 G + GL A PE + +VHRLD++TSG+++VAK A SL QL+E+ +++ Y Sbjct: 134 GTLLNGLLAHCPELSQIPRAGIVHRLDKETSGLMVVAKTLPAQNSLVWQLQERTVKRIYR 193 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPV 237 A+ G ++ + ++ + V V GKP+ T KV ERY + + CS Sbjct: 194 AVANGIVPFD-GKIETQIGRDPHNRLKMAV-VKFGGKPAVTHVKVLERYLAHSYIECSLE 251 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREF---DRQLTEAGTGLNRLFLHAAALKFTHPGT 294 TGRTHQIRVH + A HP+A D YG+ D + R LHA L FTHP + Sbjct: 252 TGRTHQIRVHMREANHPLAGDPVYGNPRHPCGDTVKEAVKSLGARQALHAYRLSFTHPES 311 Query: 295 GEVMRIEAPMDEGLKRCLQKLR 316 GE + EAP+ + + L LR Sbjct: 312 GETVSFEAPIPDDIYHLLSVLR 333 >UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWM0_HALOH Length = 308 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 96/316 (30%), Positives = 155/316 (49%), Gaps = 23/316 (7%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 K+ ++++E G+RID +L K + +S I +++ +V VN + +K +K+ GD +R+ Sbjct: 6 KVYEVSSEEEGKRIDKYLSKLNKDLSRSYIQKLIDNDKVLVNGESVKRSFKVNRGDHIRL 65 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGL 127 + E+ + P + I+YED ILVLNK +G VH G ++ L Sbjct: 66 ---IIPPPEDSGIKP-----VEMDLDIIYEDKDILVLNKNAGLVVHPAPGNHENTLVNAL 117 Query: 128 RALRP------EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 A +VHRLD+DTSGV+++AK + R L EQ +++ +K Y L++ Sbjct: 118 IAYCDNLSTISGVNRPGIVHRLDKDTSGVMVIAKNDISHRKLVEQFKQRKTKKYYRTLLK 177 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 G+ + AP+ ++ +++ + K + T FKV E + + V TGRT Sbjct: 178 GELPYKEGKIDAPIGRDPHDR-KKMAVTRKNSKKAVTYFKVLEFFRDHSYVEVELKTGRT 236 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVH Y G P+ D YG + Q T R LHA L F HP + + + Sbjct: 237 HQIRVHFSYMGFPVVGDSIYGKKRNRLQAT-------RQLLHAYRLGFYHPRNDKWVEYK 289 Query: 302 APMDEGLKRCLQKLRN 317 A + + K+ L L N Sbjct: 290 ASLPDDFKKALDILEN 305 >UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiaceae RepID=B2UL66_AKKM8 Length = 323 Score = 345 bits (887), Expect = 1e-93, Method: Composition-based stats. Identities = 100/315 (31%), Positives = 146/315 (46%), Gaps = 24/315 (7%) Query: 14 TADEAGQ-RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVR 72 T D G+ R+D +L L + +S I +++ G+V VN KP+ + GD + + R Sbjct: 5 TDDADGKIRLDQYLAAHLPELSRSRIQSLIKSGDVLVNGSPAKPKNPVSRGDSITV---R 61 Query: 73 VAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR- 131 + E E P + ILYED+ ++V+NK SG VH +G G I Sbjct: 62 IPEPEPAEAQPQ-----DIPLDILYEDEDVVVINKESGMVVHPAAGNPDGTIVNALLHHC 116 Query: 132 ------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 +VHRLD+DTSG L++AK A +SL Q + +K YLA+V+G Sbjct: 117 GDLSGIGGVERPGIVHRLDKDTSGCLVIAKNDGAHQSLTAQFAARSTEKRYLAVVQGIPS 176 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVE--ERYAFATLVRCSPVTGRTHQ 243 +V + ++ + + V GK + T + + + ++LV C+ TGRTHQ Sbjct: 177 QSSGTVFTHIGRHPVNRLKMAVVNPGSGKAAITDYDLLCADPSTDSSLVLCTLHTGRTHQ 236 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH Y GHP+ D Y + RL LHA L F HP TG+ M EAP Sbjct: 237 IRVHMLYLGHPLIGDPIYAKPARQKAKP------GRLMLHAWRLGFDHPRTGKRMDFEAP 290 Query: 304 MDEGLKRCLQKLRNA 318 + LQ N Sbjct: 291 VPPEYTPWLQLFPNG 305 >UniRef50_Q8XYX8 Ribosomal large subunit pseudouridine synthase D n=94 Tax=Proteobacteria RepID=RLUD_RALSO Length = 358 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 99/320 (30%), Positives = 153/320 (47%), Gaps = 22/320 (6%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 IV I G+R+D L L +S + + + G VRV ++P + GD + + Sbjct: 40 IVEIPEALHGERLDKALAKLLPDYSRSRLQQWIDAGAVRVGGAAVRPRAAVCGGDRIEVV 99 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV-IEGLR 128 P R + P + ++YEDD +LV+NKP+G VH +G G + GL Sbjct: 100 PQRADDENAFVAEP-------VDLDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLNGLL 152 Query: 129 ALRPEARFL---ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 P+A L +VHRLD++TSG+++VA+ A L QL+ + +++ YLALV G+ Sbjct: 153 HRYPQAAGLPRAGIVHRLDKETSGLMVVARTLPAQTDLVRQLQARTVKRTYLALVWGE-T 211 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEER----YAFATLVRCSPVTGRT 241 ++ AP+ ++ + + GKP+ T FK + A +LV+C TGRT Sbjct: 212 PEAGTIDAPIGRDPRDRTRMAIIETASGKPARTHFKTLDVVDLGRAQVSLVQCQLETGRT 271 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEA-----GTGLNRLFLHAAALKFTHPGTGE 296 HQIRVH + GHP+ D Y R F R + R LHA L HP +G+ Sbjct: 272 HQIRVHFESEGHPLLGDPVY-TRNFRRGRPQTIKAPLPAPFARQALHAVRLGLVHPASGQ 330 Query: 297 VMRIEAPMDEGLKRCLQKLR 316 + A + + L + L Sbjct: 331 SVHWHAGVPDDLAELMDALE 350 >UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_0901 n=5 Tax=Chloroflexi (class) RepID=Y901_CHLAA Length = 316 Score = 343 bits (880), Expect = 6e-93, Method: Composition-based stats. Identities = 91/315 (28%), Positives = 157/315 (49%), Gaps = 24/315 (7%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 ++V + + +RID FL + + ++ + R++ +G V + + + + G +++ Sbjct: 15 RVVVVPPTQTAERIDRFLAGAMPDLSRAQVQRLIEQGFVLYDGRSPRASQPVRPGAVIQL 74 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGL 127 P + ++YED I V+NKP+G VH G G + L Sbjct: 75 --------TIPPPIPTELVAEPIPLDVVYEDADIAVINKPAGMVVHPAPGHPRGTLVNAL 126 Query: 128 RALRPEAR-----FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 A P+ +VHRLDRDTSG+L++A+ A+RSL +Q + + M+K Y ALV G Sbjct: 127 LARYPDLAIGGELRPGIVHRLDRDTSGLLVIARHDQAMRSLVDQQQARRMRKIYQALVIG 186 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 + ++ AP+ ++ + V +G+P+ T +++ + + +L+ TGRTH Sbjct: 187 RPPE-TGTIDAPIGRDPRDRLR--MAVVPDGRPARTHYRLLDTFGDYSLLEVQLETGRTH 243 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH ++ G+PI D YG R + L+R FLHAA L HP +G A Sbjct: 244 QIRVHLRHLGYPIVGDPVYGPRR-------SHLHLSRQFLHAAYLGLVHPRSGRWQEFTA 296 Query: 303 PMDEGLKRCLQKLRN 317 P+ L+ L++L++ Sbjct: 297 PLPADLQIVLRQLQD 311 >UniRef50_C6WV38 Pseudouridine synthase n=3 Tax=Proteobacteria RepID=C6WV38_METML Length = 368 Score = 343 bits (880), Expect = 6e-93, Method: Composition-based stats. Identities = 100/318 (31%), Positives = 163/318 (51%), Gaps = 20/318 (6%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 + I++D G R+D L+ L +S + ++ G V V+ K + K+ G++V + Sbjct: 14 HLTISSDLGGLRLDVALQRLLPEHSRSRLQSWIKSGLVTVDGKASTAKTKVWGGEKVSVD 73 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLR 128 E + I+YEDDHILV+NKP+G VH +G G + L Sbjct: 74 VQVKPESR-------AFIAQDIPLDIVYEDDHILVVNKPAGMVVHPAAGNWDGTLLNALL 126 Query: 129 ALRP---EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 P + +VHRLD++TSG+L+VAK +A L QL+ + ++++Y A+V GQ Sbjct: 127 FHAPQLHDVPRAGIVHRLDKETSGLLVVAKTLNAQTHLVRQLQARTVKREYRAIVWGQL- 185 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245 V PL ++ + + +++ GKP+ TR+++ ER++ T +RC+ TGRTHQIR Sbjct: 186 WRNGVVDQPLGRDPRSRTK--MAINRMGKPAITRYEILERFSVQTYLRCNLETGRTHQIR 243 Query: 246 VHTQYAGHPIAFDDRYG------DREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 VH Q+ P+ D YG R + L +A + +R LHA L HP T E M Sbjct: 244 VHMQHLKAPLVGDPVYGFRGIVPIRAMTQTLRDAVSQFHRQALHAIKLGLVHPATNEFME 303 Query: 300 IEAPMDEGLKRCLQKLRN 317 + + + +K L+ +R+ Sbjct: 304 WQIELADDMKVLLEAMRH 321 >UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1I3F8_DESAP Length = 309 Score = 343 bits (880), Expect = 6e-93, Method: Composition-based stats. Identities = 96/316 (30%), Positives = 157/316 (49%), Gaps = 23/316 (7%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 ++ + ++ R+D FL Q + ++ I +++ V VN + + +++ GD V Sbjct: 3 TLNRYTVEEEDEQTRLDVFLAGQNPELSRARIQKLISLELVTVNGRPARASHRVRGGDCV 62 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 + +V + E + P A+ + +ED +LV+NKP G VH G G + Sbjct: 63 EL---KVPDPETPRIEPE-----AIPLEVCFEDPDVLVVNKPRGLVVHPAVGHYSGTLVN 114 Query: 127 LRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 +VHRLDRDTSG+L+VAK +A +L QL+++ + + Y AL Sbjct: 115 ALLHHCRDLSGINGILRPGIVHRLDRDTSGLLMVAKNDAAHLALAGQLKDRAVLRRYTAL 174 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTG 239 V G+ + +V AP+ ++ +R+ + G+ + T ++V R+ +L+ + TG Sbjct: 175 VHGRPRRETGTVDAPIGRHPRDR-QRMAVTPRSGRAARTHYRVVRRFDKFSLLELTLDTG 233 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RTHQIRVH + GHP+ D +YG GL FLHA L F HP TGEV+ Sbjct: 234 RTHQIRVHMAHVGHPLVGDLKYGH-------ARPELGLEGQFLHAGTLGFRHPRTGEVLV 286 Query: 300 IEAPMDEGLKRCLQKL 315 EAP+ L L++L Sbjct: 287 FEAPLPSELAAVLERL 302 >UniRef50_A6GP31 Pseudouridine synthase n=1 Tax=Limnobacter sp. MED105 RepID=A6GP31_9BURK Length = 335 Score = 343 bits (880), Expect = 6e-93, Method: Composition-based stats. Identities = 153/327 (46%), Positives = 206/327 (62%), Gaps = 14/327 (4%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 K ++ I QR+DNFL KGVPKS ++RI+R GEVR+N+KR + + KL Sbjct: 6 KPNPDRAVLLEIDEKHQDQRLDNFLCNVCKGVPKSHVFRIIRSGEVRINRKRAEAKTKLC 65 Query: 62 AGDEVRIPPVRVAEREE-------EAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVH 114 GD VR+PP++V E+++ ++ AA IL+ED+H+LV+NKPSG AVH Sbjct: 66 VGDVVRVPPIKVVEKQDLDSLSLSAGLNKTQLLKAAADLPILFEDEHLLVVNKPSGMAVH 125 Query: 115 GGSGLSFGVIEGLRALRPE-ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQ 173 GGSG SFG+IE +RALR E + LELVHR+DR+TSG+L+++KKRSALR L EQLR + + Sbjct: 126 GGSGSSFGLIECIRALRAETHQDLELVHRIDRETSGILIISKKRSALRKLQEQLRARSWK 185 Query: 174 KDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEE----RYAFA 229 K Y LV G W ++ V PLLK E V V + G + T+FKV + Y+ Sbjct: 186 KYYKTLVLGHWPEALRQVDLPLLKTQSSEKEARVFVDESGDKACTKFKVIQCYKSSYSSF 245 Query: 230 TLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKF 289 TL++ +TGRTHQIRVHT PIA DDRYG+ E ++QL A GL R+FLHAA L+ Sbjct: 246 TLIQAQILTGRTHQIRVHTSANKFPIAGDDRYGNFEMNKQL--ARQGLKRMFLHAARLQL 303 Query: 290 THPGTGEVMRIEAPMDEGLKRCLQKLR 316 HP T E + +EAP+ L L+ L+ Sbjct: 304 VHPATNETIVLEAPLAPELDGFLKSLQ 330 >UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0MJ49_RHOM4 Length = 355 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 97/343 (28%), Positives = 144/343 (41%), Gaps = 51/343 (14%) Query: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPVRVAER 76 G R+D +L L ++ I R +R+G V VN + KP Y ++ GD + + +R Sbjct: 18 EGGRLDAYLARFLAQASRTKIQRGIREGRVTVNGVVVQKPAYTVQPGDVITLRILRPPPV 77 Query: 77 EEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR----- 131 + I+YED +++V+NK +G VH G G + Sbjct: 78 --------EIVPEPIPLDIVYEDPYLIVVNKQAGLVVHPARGNRSGTLVNALLYYIGSGP 129 Query: 132 ----------------------------PEARFLELVHRLDRDTSGVLLVAKKRSALRSL 163 EA +VHRLD+DT+G+++VAK L Sbjct: 130 VRFDEEDDLPEDDEIGLSMVSTGPTEAKLEAPRPGIVHRLDKDTTGLIVVAKDDVTHTGL 189 Query: 164 HEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVE 223 Q + + + YLA+V G ++A + ++ V GK + T ++V Sbjct: 190 ARQFEHRTIARTYLAIVWGVPDPPRGRIEAAIGRDPRDRQRMAVVPDDRGKRAVTHYEVV 249 Query: 224 ERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREF---------DRQLTEAG 274 E A LVR TGRTHQIRVH ++ GHP+ D YG R + Sbjct: 250 EALPAAALVRFKLETGRTHQIRVHARHIGHPVLGDPTYGGRTIRYGPHTPRRRAFYDQLF 309 Query: 275 TGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 L R LHA L F HP TGE + EAP+ E + L++LR Sbjct: 310 ARLTRQALHAHTLGFRHPRTGEWLEFEAPLPEDMACALEQLRQ 352 >UniRef50_B6BTS8 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=B6BTS8_9PROT Length = 306 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 136/313 (43%), Positives = 196/313 (62%), Gaps = 10/313 (3%) Query: 4 ETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAG 63 + ++ + I QRIDNFL K VPK+ I++I+R GEVRVNKKR+K YKL+ Sbjct: 2 QNKQIQHIDIDESSEDQRIDNFLFKTFKDVPKNHIFKIIRNGEVRVNKKRVKTLYKLKIN 61 Query: 64 DEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV 123 D VRIPP+ E++E+ S + + I+YED+ +LV+NKPSG AVHGGSG+ FG+ Sbjct: 62 DVVRIPPIEFIEKKEKKPSDNFKP------HIIYEDEWLLVVNKPSGLAVHGGSGIDFGL 115 Query: 124 IEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 IE +R ++PE +FLELVHR+D++TSGV+++AKKRSALRS+ E R K ++K+YL V+G Sbjct: 116 IEHMRHIKPEYKFLELVHRIDKNTSGVIVIAKKRSALRSMQELFRNKKIKKNYLVAVKGN 175 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQ--EGKPSETRFKVEERYAFATLVRCSPVTGRT 241 W S K V L K G + V GK S++ F + ++ +L+ +TGRT Sbjct: 176 WDSKKKEVSLRLEKKQTSEGHHVNVVEDPLRGKLSKSIFYLVKQMQKQSLLSAQIITGRT 235 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRV + G P+ DD+YGD +++L +GL R+FLHA L F HP T E + + Sbjct: 236 HQIRVQLAFLGFPVLGDDKYGDFALNKKL--QSSGLKRMFLHAHKLSFFHPFTEEKVELT 293 Query: 302 APMDEGLKRCLQK 314 A + L++ + Sbjct: 294 ADLPIELRKFFDE 306 >UniRef50_Q5ZT70 Pseudouridine synthase n=5 Tax=Legionella RepID=Q5ZT70_LEGPH Length = 317 Score = 342 bits (877), Expect = 1e-92, Method: Composition-based stats. Identities = 154/312 (49%), Positives = 208/312 (66%), Gaps = 7/312 (2%) Query: 6 PSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDE 65 V I ++E GQR+DN+L LKGVPKS IYRI+R GEVR+NKKR + +L+ GD Sbjct: 4 SEVSYKEIGSEENGQRLDNYLIRILKGVPKSHIYRIIRGGEVRINKKRAQASSRLQIGDS 63 Query: 66 VRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIE 125 +RIPP+R+ + +E VS +L K L D I++ED +LV+NKP+G AVHGGSGLS GVIE Sbjct: 64 IRIPPIRMTDSKEIFVSDNLAK--RLKDSIIFEDSSLLVINKPAGIAVHGGSGLSLGVIE 121 Query: 126 GLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 LR R + +LELVHRLDR+TSG LL+AKKRS LR++ L + +QK Y AL+ +W Sbjct: 122 ALRKTRHDLSYLELVHRLDRETSGCLLLAKKRSTLRAIQALLEAREVQKIYWALLTHRWD 181 Query: 186 SHVK-SVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQI 244 K ++ APL KN L+SGER+V V ++GK SET FK+ E Y A V SP TGRTHQI Sbjct: 182 GKKKITITAPLEKNTLKSGERVVSVQKDGKASETDFKLLENYHQACWVEASPKTGRTHQI 241 Query: 245 RVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPM 304 RVH+ Y GH I D++YG + + + + NRL+LHA +++F G + +A + Sbjct: 242 RVHSAYFGHVIVGDEKYGAKVGEVEGIDYQQ--NRLYLHARSIQFN--LNGVMHVFQADV 297 Query: 305 DEGLKRCLQKLR 316 D+G L++LR Sbjct: 298 DDGFGNTLKQLR 309 >UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes RepID=C0BNA6_9BACT Length = 379 Score = 342 bits (877), Expect = 1e-92, Method: Composition-based stats. Identities = 97/319 (30%), Positives = 160/319 (50%), Gaps = 23/319 (7%) Query: 14 TADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRV 73 + + RID +L ++ ++ I + ++G + VN +K YK++AGD++++ Sbjct: 60 SKGQEPLRIDKYLMNFIENATRNKIQQAAKEGHIWVNDLVVKQNYKVKAGDQIKVMFTHP 119 Query: 74 AEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRALRP 132 L + ++YED ++V+NKP G VH G G G + L Sbjct: 120 PYE-------FLLTPEDIPLDVVYEDSDLMVVNKPPGMVVHPGHGNYSGTLINALLFHVK 172 Query: 133 EAR-----FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 + LVHR+D+DTSG+L+VAK A+ L +Q +K +++Y+A+V G + Sbjct: 173 DLPLNADERPGLVHRIDKDTSGLLVVAKTAKAMTHLAKQFFDKTSEREYVAIVWGNVEEE 232 Query: 188 VKSVQAPLLKNILQSGERIVRVSQE-GKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 +V+ + ++ + V + GK + T +KV ER + TLV C TGRTHQIR Sbjct: 233 QGTVRGHIGRHPKNRLQMAVFPDGDQGKEAVTHYKVMERLGYVTLVSCVLETGRTHQIRA 292 Query: 247 HTQYAGHPIAFDDRYGDR---------EFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 H ++ GH + D+RYG ++ + + A L R LHA L F HP +GE+ Sbjct: 293 HMKHIGHTLFNDERYGGEKILKGTTFTKYKQFVDNAFKALPRQALHAKTLGFVHPSSGEL 352 Query: 298 MRIEAPMDEGLKRCLQKLR 316 MR P+ E + C++K R Sbjct: 353 MRFNTPIPEDMVLCIEKWR 371 >UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_0723 n=13 Tax=Chlorobiaceae RepID=Y723_CHLP8 Length = 327 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 91/327 (27%), Positives = 160/327 (48%), Gaps = 27/327 (8%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 + ++ + RID +L Q++ + ++ + + +G V VN K +K Y++++ D + + Sbjct: 2 TLDVSKVQTPMRIDRYLTQQVENMTRNKVQAAIEEGRVLVNGKPVKSNYRVKSCDHIHLT 61 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG--L 127 +R E + ILYEDD ++V++K +G VH G G + L Sbjct: 62 FLRPPAPE--------LAPEDIPITILYEDDDLMVIDKEAGMVVHPAFGNWTGTLANAIL 113 Query: 128 RALRPEAR-------FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 L +A +VHRLD+DTSG++++AK +AL L Q + ++K Y A+V Sbjct: 114 HHLGKDADELDKTEMRPGIVHRLDKDTSGLIIIAKNPTALHKLARQFANRQVEKVYKAIV 173 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQ--EGKPSETRFKVEERYAFATLVRCSPVT 238 G ++ +++ + ++ + EGK + T ++V E + +L+ + T Sbjct: 174 WGVPKAESGTIKTNIGRSHKNRKVMANFPYEGAEGKHAITDYQVVEDLGYFSLMDVTLHT 233 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGD--------REFDRQLTEAGTGLNRLFLHAAALKFT 290 GRTHQIRVH Q+ GH I D+ YG + + ++R LHA L+F Sbjct: 234 GRTHQIRVHLQHLGHSILGDETYGGATPRTLPFSKSEPFTRNLLELMSRQALHAQTLRFR 293 Query: 291 HPGTGEVMRIEAPMDEGLKRCLQKLRN 317 P TGE + AP+ E ++ L+K+R Sbjct: 294 QPTTGEPLSFSAPLPEDMELVLEKIRT 320 >UniRef50_C1F7V3 Pseudouridine synthase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F7V3_ACIC5 Length = 355 Score = 341 bits (875), Expect = 2e-92, Method: Composition-based stats. Identities = 104/343 (30%), Positives = 167/343 (48%), Gaps = 34/343 (9%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 K P ++ + A+ AGQR+D +L TQL V +S + +L G+V V+ + + KL Sbjct: 20 KDHAPQIQHFTVPAEAAGQRLDAWLTTQLPDVSRSRVKLLLDDGQVTVDSLKERASLKLR 79 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 G+ V + R E A P + I+YED ++V+NKP+G VH GSG + Sbjct: 80 GGESVEV-------RGEPAPPPLRAMAEDIPLDIIYEDKDLIVVNKPAGMMVHAGSGATD 132 Query: 122 G------VIEGLRALR------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRE 169 ++ L + +VHRLD++TSG+++VA+ +A + L E + Sbjct: 133 SARNRGTLVNALLGRQEKLSKTGGDLRPGIVHRLDKETSGLIIVARNDAAHQRLAEMFSQ 192 Query: 170 KGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKV----EER 225 + + K YLALV G ++ A + +++++ R ++ + + + ++V E R Sbjct: 193 REIHKTYLALVHGHIAEDRGTINAAIARDVIRRTRMTTRRTEGARTAISHYRVQRRIETR 252 Query: 226 YAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDR-----------EFDRQLTEAG 274 + TLV TGRTHQIRVH GHP+ D YG + G Sbjct: 253 WGKFTLVSVRIETGRTHQIRVHLSSIGHPVVGDTHYGAPTTIVLPVANRARRKQLPAPEG 312 Query: 275 TGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 L R FLHAA LKF HP + + + +EAP+ L L++L + Sbjct: 313 LSLPRNFLHAAELKFPHPRSEKPLHLEAPLPAELVAFLEQLES 355 >UniRef50_A9IQ66 Pseudouridine synthase n=5 Tax=Bacteria RepID=A9IQ66_BART1 Length = 334 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 103/342 (30%), Positives = 171/342 (50%), Gaps = 38/342 (11%) Query: 8 VKIVAITADEA-GQRIDNFLRTQLKGV-PKSMIYRILRKGEVRVNKKRIK-PEYKLEAGD 64 + I +T + A QR+D +L Q V +S + ++R+G ++++ + IK P+ KL+ Sbjct: 1 MVIQKVTDEGALDQRLDQWLAKQYHDVLSRSRLQTLIREGCLKIDGQFIKEPKTKLKPNQ 60 Query: 65 EVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI 124 + + + + E A A+A ILYEDDH++V+NKP+G VH G+G G + Sbjct: 61 IIELEMPNLRDAEPSA--------EAIALDILYEDDHVIVINKPAGLVVHPGNGNWTGTL 112 Query: 125 EGLRALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG----M 172 + +VHRLD++TSGV++VAK A +SL Q + G + Sbjct: 113 VNALIYHCGNSLSGIGGVKRPGVVHRLDKNTSGVMVVAKNDLAHKSLSAQFSDHGRTCAL 172 Query: 173 QKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRV--SQEGKPSETRFKVEERYAF-- 228 + Y AL+ G +V ++ A L ++ ++ V + + + T F + E+Y Sbjct: 173 DRRYHALIWGTPHRNVWTIDASLGRSPHNRTKQAVVHKQTPHARHAVTHFSLLEKYGTHA 232 Query: 229 -----ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGD------REFDRQLTEAGTGL 277 A+L+ C TGRTHQIRVH + GHP+ D YG+ + L A Sbjct: 233 DSTSFASLLECRLETGRTHQIRVHMAHIGHPLIGDTVYGNAFKTKSNTLNPTLKNAIDQF 292 Query: 278 NRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNAR 319 NR LHAA+L F HP +G+V+ AP+ + + + ++ L+ Sbjct: 293 NRHALHAASLTFEHPSSGKVISFSAPLPQDMAQLIKHLKKMN 334 >UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae RepID=C7NAV5_LEPBD Length = 326 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 96/313 (30%), Positives = 159/313 (50%), Gaps = 29/313 (9%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + + +EAG RID FL +L + ++ I ++++ + VN+K+ KP YK+E D +++ Sbjct: 26 IVVLKEEAGSRIDKFLSERL-ELTRTRIQQLIKDENILVNEKKTKPAYKIEENDTIKV-- 82 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG---- 126 + E E + P + I+YED+ + V+NK +G VH +G G + Sbjct: 83 -VIPELETVEIKPE-----NIDIEIIYEDNDLAVINKKAGIVVHPANGHYSGTLVNAILY 136 Query: 127 ----LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 L + E R +VHRLD+DTSG+L++AK A L + +K ++K YLA+++G Sbjct: 137 HIKDLSGINGEIR-PGIVHRLDKDTSGLLIIAKNDKAHLKLSQMFHDKTVKKIYLAILKG 195 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVS-QEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 + + + ++ + V GK + T ++V + TLV+ TGRT Sbjct: 196 KLNQKSGRIVTQIGRDKNDRKKMTVINDLNSGKTAITNYEVISQTEKFTLVKVHIETGRT 255 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVH ++ G+PI D YG + ++ R LHA L+F HP T E + Sbjct: 256 HQIRVHMKHLGYPILGDSVYGRTDTEK----------RQMLHAYKLEFQHPITEENLEFI 305 Query: 302 APMDEGLKRCLQK 314 A + E K+ L+K Sbjct: 306 AKLPEDFKKALKK 318 >UniRef50_C4FWV7 Pseudouridine synthase n=2 Tax=Firmicutes RepID=C4FWV7_9FIRM Length = 309 Score = 340 bits (873), Expect = 4e-92, Method: Composition-based stats. Identities = 107/310 (34%), Positives = 163/310 (52%), Gaps = 17/310 (5%) Query: 15 ADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVA 74 +AG R+D L L G +S I +I++ G V VN + K +KL+ + + + +A Sbjct: 9 EGQAG-RLDKVLTDLLPGESRSTIQKIIKDGLVSVNGQEQKANFKLKGDETLLVARRNLA 67 Query: 75 EREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRALRPE 133 E+ P A+ I+YED+ ILV+NKP+G VH G G + GL Sbjct: 68 VEEDSLPEPE-----AMDLDIIYEDEDILVINKPAGLVVHPSKGHLKGTLVNGLLHYLNG 122 Query: 134 A-------RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 +VHR+D+DTSG+L+VAK +A ++L +QL M++ Y+ALV GQ ++ Sbjct: 123 NLSTGSDFYRPGIVHRIDKDTSGLLVVAKHNAAHQALADQLLNHDMRRSYIALVHGQVKA 182 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 +++APL ++ V++EGK + TRF+V E + ATL+ TGRTHQIRV Sbjct: 183 PQGTIEAPLQRDPANRLR--WTVAKEGKYALTRFQVMENFENATLLDLELETGRTHQIRV 240 Query: 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDE 306 H ++ GHP+ D Y + D + LHA ALK HP +GE + +AP+ Sbjct: 241 HLEFIGHPLVGDPVY-RKGLDHIKGSLVHDMTGQLLHAYALKLQHPRSGEWLEFKAPLPR 299 Query: 307 GLKRCLQKLR 316 + L +LR Sbjct: 300 RFEEALDQLR 309 >UniRef50_Q3A0C2 Pseudouridine synthase n=13 Tax=Bacteria RepID=Q3A0C2_PELCD Length = 326 Score = 340 bits (872), Expect = 5e-92, Method: Composition-based stats. Identities = 93/320 (29%), Positives = 148/320 (46%), Gaps = 23/320 (7%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 + + + +R+D FL QL + +S + +++ G V ++ KP KL+ G+ + + Sbjct: 6 TLCFGRERSPERLDRFLVEQLPELSRSQLKKLIDDGRVLLDGAAAKPGSKLKGGETLTVD 65 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 SP + VILYED H++V++KP G VH G G + Sbjct: 66 V--------PDPSPAEAVSEDIPLVILYEDRHLIVIDKPPGMVVHPAPGHYQGTLVNALL 117 Query: 130 LR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 +VHRLD+DTSGV++ K SA +SL Q + + + Y+AL+ G Sbjct: 118 HHCQDLSGIGGELRPGIVHRLDKDTSGVMVATKTDSAHQSLAAQFKAHSITRRYIALIHG 177 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF--ATLVRCSPVTGR 240 S+ P+ ++ +++ + G+ + T ++V R+ TLV + TGR Sbjct: 178 VLTGDRGSIDRPIGRHPTHR-KKMSTTCRTGRHAVTHWRVLRRFDDDRLTLVELALETGR 236 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREF-----DRQLTEAGTGLNRLFLHAAALKFTHPGTG 295 THQIRVH HP+ D YG D QL + L R LHA L F HP TG Sbjct: 237 THQIRVHFSEQQHPLLGDPVYGGSGRLKTINDPQLLKRAKALGRQALHARLLGFQHPETG 296 Query: 296 EVMRIEAPMDEGLKRCLQKL 315 + + +P+ E L+ + L Sbjct: 297 KYLEFSSPLPEDLRSVIDYL 316 >UniRef50_A0L9J0 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9J0_MAGSM Length = 332 Score = 339 bits (871), Expect = 7e-92, Method: Composition-based stats. Identities = 97/321 (30%), Positives = 151/321 (47%), Gaps = 29/321 (9%) Query: 15 ADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRIPPVRV 73 AD+AGQR+D L + +S + R +++ V V+ + K P K+ G + I P Sbjct: 16 ADDAGQRLDKALCCHFPDLTRSTLQRWIKEERVIVDHEVAKLPSQKVRVGQHIIIYPSEP 75 Query: 74 AEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR-- 131 P +A IL+ED+H++VLNKP+G VH G+G++ G + Sbjct: 76 E--------PSTALPEEIALEILFEDEHLIVLNKPAGMVVHPGAGVNHGTLVNALLYHCG 127 Query: 132 ------------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 +VHRLD++TSG+++ AK+ A L Q ++ + + YLAL Sbjct: 128 TPDNPHGGLSGIGGVIRPGIVHRLDKETSGIMVAAKQDHAHIHLSRQFEQRTIGRRYLAL 187 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTG 239 RG Q ++ + ++ + + V V Q G+ + TR+KV E L+RC +G Sbjct: 188 TRGIPQPAQGRIEGAIGRHPIHRTKMAV-VEQGGRAAATRYKVLEPLGQFALIRCRLESG 246 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDR-----EFDRQLTEAGTGLNRLFLHAAALKFTHPGT 294 RTHQIRVH + GHP+ D YG + + + R LHA L F HP T Sbjct: 247 RTHQIRVHMTHIGHPLVGDPLYGAQHKAPSHWPPLHRQRFDQFQRQALHAHTLTFIHPHT 306 Query: 295 GEVMRIEAPMDEGLKRCLQKL 315 GE M + P ++ + L Sbjct: 307 GEEMSFKRPPPADFRQLYETL 327 >UniRef50_B2RIT5 Pseudouridine synthase n=80 Tax=root RepID=B2RIT5_PORG3 Length = 365 Score = 339 bits (870), Expect = 8e-92, Method: Composition-based stats. Identities = 102/326 (31%), Positives = 157/326 (48%), Gaps = 29/326 (8%) Query: 14 TADEAGQ---RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 T + GQ RID FL ++ +S I + G + VN + +K Y+++ GD V + Sbjct: 35 TVADPGQTLIRIDKFLVDRMNNATRSRIQQAAEAGAIFVNGRPVKSNYRIKPGDVVTLEL 94 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 +R R E + P + I+YEDD +LV+NKP+G VH G G G + A Sbjct: 95 LR--PRRELEIIPE-----DIPLDIVYEDDVLLVINKPAGLVVHPGHGNYTGTLVNALAY 147 Query: 131 R--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 P L LVHR+D+DTSG+L+VAK+ A L +Q K + Y ALV G Sbjct: 148 YLREDPEYDPMDPSLGLVHRIDKDTSGLLVVAKRAEAKSDLCKQFYYKTTHRSYRALVWG 207 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQE--GKPSETRFKVEERYAFATLVRCSPVTGR 240 ++ + ++ + +++ + V GKP+ T ++V E A+ + + C TGR Sbjct: 208 RFDYPIGTITGNIGRDLKDRLQMAVFPPDGDIGKPAVTHYQVLEELAYVSWIECRLETGR 267 Query: 241 THQIRVHTQYAGHPIAFDDRYGD---------REFDRQLTEAGTGLNRLFLHAAALKFTH 291 THQIR H ++ GH + D+RYG + R + R LHA L F H Sbjct: 268 THQIRAHMKHIGHTLFADERYGGDQILRGNNTANYRRFVQNCLAICPRQALHAKTLGFRH 327 Query: 292 PGTGEVMRIEAPMDEGLKRCLQKLRN 317 P TG M+ ++ + L L++ R Sbjct: 328 PVTGVEMQFDSDIPADLTTLLERWRT 353 >UniRef50_A5WFS2 Pseudouridine synthase n=3 Tax=Psychrobacter RepID=A5WFS2_PSYWF Length = 420 Score = 339 bits (870), Expect = 1e-91, Method: Composition-based stats. Identities = 98/319 (30%), Positives = 157/319 (49%), Gaps = 22/319 (6%) Query: 12 AITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPV 71 +T ++AGQRID ++ + L+ G + VN K +Y+++ GD VR+ Sbjct: 108 TVTQEQAGQRIDKLAADMFTEHSRAQLQDWLKSGNLTVNDHNEKAKYRVKIGDIVRLEAK 167 Query: 72 RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRAL 130 ++ + I+YEDD ++V+NKP G VH G+G G + GL Sbjct: 168 LEQHGSDQP--------EDIKLDIIYEDDSVIVINKPVGMVVHPGAGNWSGTLVNGLLYH 219 Query: 131 RP---EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS- 186 P LVHR+D++TSG+L++ K ++A L EQL++K + + Y +V G S Sbjct: 220 YPNQAHLPRAGLVHRIDKNTSGLLVIGKTKAAQLELQEQLKDKSVYRHYQCVVAGDAPSL 279 Query: 187 -HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF-ATLVRCSPVTGRTHQI 244 +++ AP+ ++ Q + + V+ GK + T + +L+ TGRTHQI Sbjct: 280 ARQRTIDAPIGRHRTQRTK--MTVTSTGKTAITHIMKITPLSDTYSLLDVRLETGRTHQI 337 Query: 245 RVHTQYAGHPIAFDDRYGDREFDR-----QLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RVH + GHPI DD YG+R+ R + +A R LHA L F HP TGE + Sbjct: 338 RVHLSHIGHPIIGDDIYGNRQQLRAGLTPEQRQAIQSFPRQALHAYKLGFIHPETGESIE 397 Query: 300 IEAPMDEGLKRCLQKLRNA 318 + AP+ + + L + Sbjct: 398 LTAPLPQDIVELAHTLSDG 416 >UniRef50_Q0AFD5 Pseudouridine synthase n=3 Tax=Nitrosomonas RepID=Q0AFD5_NITEC Length = 354 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 146/313 (46%), Positives = 206/313 (65%), Gaps = 13/313 (4%) Query: 12 AITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPV 71 + GQRIDNFL LK +P+ IY++LR G+VRVN KRI Y+L D+VRIPPV Sbjct: 39 QVDETAEGQRIDNFLIKALKDIPRRHIYQLLRSGQVRVNSKRIDAGYRLLLNDKVRIPPV 98 Query: 72 RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR 131 + +P+ + LY+DD++LV+NKP+GTAVHGGSG+S+GVIE LR R Sbjct: 99 LKLAKPISRQAPYRAEQFDT----LYQDDYLLVINKPAGTAVHGGSGISYGVIEQLRKQR 154 Query: 132 PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSV 191 P+ +FLELVHRLDR+TSGVLL+A+KR L LH+Q+RE ++K YL LVRG+W++ +++V Sbjct: 155 PDWKFLELVHRLDRETSGVLLLARKRQTLLELHKQIREGTVRKHYLTLVRGKWKNSLQNV 214 Query: 192 QAPLLKNILQSGERIVRV------SQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245 + PL K + GER V + + + + T F +++ + +L+ TGRTHQIR Sbjct: 215 RLPLYKYLTAEGERRVAIATGRNDHDKVQQAYTLFALQKNWEAFSLLDAELKTGRTHQIR 274 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTE---AGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 VH + G PIA DD+YGD +RQL + +G L R+FLHA+ THP TGE++R+EA Sbjct: 275 VHLAHLGFPIAGDDKYGDFGLNRQLQKDDGSGLVLKRMFLHASVFVCTHPVTGELLRLEA 334 Query: 303 PMDEGLKRCLQKL 315 P+ + L+ L+ L Sbjct: 335 PLPDELRVFLRNL 347 >UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C0W7_9PLAN Length = 342 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 97/326 (29%), Positives = 155/326 (47%), Gaps = 30/326 (9%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + + A G RID++L + + +++ V VN +K ++ D V + Sbjct: 19 ITVEARAHGWRIDHYLCRLYPNYTRVLFQTAIKQEAVLVNGLPVKAARRMRVNDRVSV-- 76 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 R+ E + + P + I+YEDD I ++NKPS VH G G G + G Sbjct: 77 -RLPELPDNRLPPE-----DIPIDIVYEDDWIAIINKPSDMIVHPGKGNYAGTLAGALQY 130 Query: 131 RPEA-------RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 + +VHRLDR+TSG+++VAK L Q ++ +QK+Y A+V G+ Sbjct: 131 HFDQLSDVAGQYRPGIVHRLDRNTSGIMVVAKDNQVHAKLSAQFEKRDVQKEYRAIVWGR 190 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEG--KPSETRFKVEERYAFATLVRCSPVTGRT 241 + + + + ++ E+++ + G + + T ++V ERY T VR P TGRT Sbjct: 191 MEFDTDYIDTFMCVHP-RAREKMIVCDEGGNARNAFTYYEVIERYQAFTYVRLKPRTGRT 249 Query: 242 HQIRVHTQYAGHPIAFDDRYGDR------------EFDRQLTEAGTGLNRLFLHAAALKF 289 HQ+RVH Q+ GH I D YG E D E+ + R LHA L+F Sbjct: 250 HQLRVHMQHIGHSIVADRVYGGHKSLKMKSLGIQAEADAAELESDVLIERQALHAYCLEF 309 Query: 290 THPGTGEVMRIEAPMDEGLKRCLQKL 315 HP +G+ M+ EAP+ E ++ L L Sbjct: 310 FHPQSGKPMKFEAPLPEDMQNTLAAL 335 >UniRef50_B8E0R4 Pseudouridine synthase n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E0R4_DICTD Length = 303 Score = 338 bits (867), Expect = 2e-91, Method: Composition-based stats. Identities = 95/318 (29%), Positives = 154/318 (48%), Gaps = 25/318 (7%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 + I + +RID +L ++ + +S I ++ K ++VN+K IK YK++ GD + + Sbjct: 4 QRYEIYVEGESERIDKYLSKKVP-LSRSQIQDLIEKELIKVNEKPIKNSYKVKLGDRIEV 62 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 E E K + I+YED+ ++++NKP G VH G + Sbjct: 63 IIPPPVETE--------VKPQDIPIEIVYEDEDMVIINKPKGMVVHPAHGHYNDTLVNAL 114 Query: 129 ALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 R ++HRLD+DT+G+L++AK + + L EQL+ + +++ Y AL Sbjct: 115 LYRVKDLSGIGGELRPGIIHRLDKDTTGLLIIAKNDLSHQKLSEQLKNRTLRRTYWALCE 174 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 G+ K ++AP+ ++ + + + + GK + T FKV ER+ TL+ TGRT Sbjct: 175 GEIPWEEKRIEAPIGRHPI--NRKKMAIVPYGKIAITNFKVLERFKGYTLISADLETGRT 232 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVH + G PI D+ YG + G+ LHA + F HP G M E Sbjct: 233 HQIRVHISHLGFPIVGDEVYGR-------IDKKFGVKGQLLHAKKVSFIHPTKGIPMEFE 285 Query: 302 APMDEGLKRCLQKLRNAR 319 + E K+ L LR R Sbjct: 286 IDLPEEFKKVLTLLREKR 303 >UniRef50_Q49WX8 Pseudouridine synthase n=1 Tax=Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 RepID=Q49WX8_STAS1 Length = 305 Score = 337 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 101/313 (32%), Positives = 156/313 (49%), Gaps = 27/313 (8%) Query: 14 TADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRV 73 ++ GQRID L ++ I ++ V+VN + IK YK + D + + Sbjct: 10 NPEDTGQRIDKLLPEYHSEWSRTQIQDWIKASLVKVNDQVIKSNYKTKMNDHIVV----- 64 Query: 74 AEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI--------E 125 E+E V +Q L I YEDD + ++ KP G VH +G G + + Sbjct: 65 --TEKETVEADIQP-ENLNLDIYYEDDDVAIVYKPKGMVVHPSAGHYTGTLVNGLMYQMK 121 Query: 126 GLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 L + E R +VHR+D+DTSG+L+VAK A RSL +QL K + + Y+ALV G+ Sbjct: 122 NLSGINGEIR-PGIVHRIDKDTSGLLMVAKNDVAHRSLVDQLVNKTVTRKYVALVHGKIP 180 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245 +V AP+ +N ++ + + V +GK + T F V E + TL+ C TGRTHQIR Sbjct: 181 HDYGTVDAPIGRN--KNDRQSMDVVDDGKEAVTHFNVLEHFNKYTLIECQLETGRTHQIR 238 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMD 305 VH +Y G+P+ D +YG ++ + LHA + F HP T E + + Sbjct: 239 VHMKYIGYPLVGDPKYGPKK--------TLDIGGQALHAGIIGFEHPVTHEYIEKSTALP 290 Query: 306 EGLKRCLQKLRNA 318 E ++ L +LR + Sbjct: 291 EDFEQLLSELRRS 303 >UniRef50_A5EX53 Pseudouridine synthase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EX53_DICNV Length = 322 Score = 337 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 97/315 (30%), Positives = 147/315 (46%), Gaps = 20/315 (6%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + + R+D L ++ + G V +N K + + AGD++ Sbjct: 12 FIVDHNNHALRLDQVLARNYPEFSRNRWQDAINAGTVLLNGAAAKSKSLVCAGDQITGVL 71 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRA 129 + + E+ A L ILY DD I+V+NKP+G VH G + L Sbjct: 72 TQEIQTEDSA--------QNLPLNILYADDDIIVINKPAGLVVHPAVGNHDNTLLNALLY 123 Query: 130 LRPEARFL---ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 P+ + L +VHRLD+DTSG +++A A L QL+ + M + YLALV G + Sbjct: 124 HFPQTKHLPRSGIVHRLDKDTSGAMVIAHSARAHTDLVRQLQNRSMGRIYLALVYGYITA 183 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 ++ P+ ++ + VR +GKP+ T +++EER+ TL+R TGRTHQIRV Sbjct: 184 GD-TIDLPIGRHAKDRLKMAVR--PDGKPAITHYRIEERWQTLTLLRVQLETGRTHQIRV 240 Query: 247 HTQYAGHPIAFDDRYGDREFDRQ-----LTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 H + HP+ D YG R F +A R LHA L HP T E+MR Sbjct: 241 HLSHHRHPLVGDKLYGARPFLASSLTELQRQALAEFPRQALHAVELHLHHPATNEIMRFT 300 Query: 302 APMDEGLKRCLQKLR 316 AP+ + + + LR Sbjct: 301 APLPDDMTQLFTILR 315 >UniRef50_B9JRD0 Pseudouridine synthase n=1 Tax=Agrobacterium vitis S4 RepID=B9JRD0_AGRVS Length = 342 Score = 336 bits (862), Expect = 7e-91, Method: Composition-based stats. Identities = 99/333 (29%), Positives = 162/333 (48%), Gaps = 36/333 (10%) Query: 13 ITADEAGQRIDNFLRTQLKG-VPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRIPP 70 I ++A R+D +L L G + ++ + ++ +G V VN + P+ K++ GD++ I Sbjct: 16 IAGEDAEGRLDAWLAASLGGDLSRNRVKALIEQGAVFVNGTAVTEPKRKIKPGDQLVIAM 75 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 + E K + +LYED ++VL+KP+G VH G+G G + Sbjct: 76 PEPEDPEP--------KGEDIPLTVLYEDKDLIVLSKPAGLVVHPGAGNWTGTLVNALIH 127 Query: 131 R--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG----MQKDYLA 178 + +VHRLD++TSGV++VAK A R L +Q + G +++ Y A Sbjct: 128 HCGDSLSGIGGVKRPGIVHRLDKETSGVMVVAKNDIAHRHLADQFADHGRSGPLERAYQA 187 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIVR-VSQEGKPSETRFKVEERYAF-------AT 230 LV G+ + ++ A L + ++ + R + + + + T ++V ERY A+ Sbjct: 188 LVWGRPRGLRGTIDAALGRAGDRTKRTVKREDTDDAREAITHYQVMERYGEKPDATCLAS 247 Query: 231 LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYG------DREFDRQLTEAGTGLNRLFLHA 284 LV C TGRTHQIRVH + GHP+ D YG T +R LHA Sbjct: 248 LVECRLETGRTHQIRVHMAHIGHPLIGDPEYGAAFKTKANLLPDAAKAIVTNFHRQALHA 307 Query: 285 AALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 L F HP TG+VM AP+ + ++ ++ LR+ Sbjct: 308 YLLAFEHPTTGDVMHFAAPIPDDMETIIRALRD 340 >UniRef50_A1URK8 Pseudouridine synthase n=2 Tax=Bartonella RepID=A1URK8_BARBK Length = 336 Score = 336 bits (862), Expect = 7e-91, Method: Composition-based stats. Identities = 100/338 (29%), Positives = 162/338 (47%), Gaps = 38/338 (11%) Query: 12 AITADEA-GQRIDNFLRTQLKG-VPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRI 68 IT ++A GQRID +L + + +S + ++R+G ++++ K + P+ K+++ + + Sbjct: 4 QITDEDALGQRIDQWLAKHYQNELSRSRLQTLIREGYLKIDGKLVTEPKTKIKSNQTIEL 63 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 ++ + A+ IL+EDDHI+V+NKP+G VH G G G + Sbjct: 64 --------TIPTLNNAYPEGEAIPLHILFEDDHIIVVNKPAGLVVHPGHGNWTGTLVNAL 115 Query: 129 ALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG----MQKDY 176 R +VHRLD++TSGV++VAK A + L Q + G + + Y Sbjct: 116 IYHCGDSLSGIGGVRRPGIVHRLDKNTSGVIVVAKNDLAHKGLSAQFSDHGRTGVLDRRY 175 Query: 177 LALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQE--GKPSETRFKVEERYAF------ 228 AL+ G ++ + A L + ++ V S + + T F V E+Y Sbjct: 176 HALIWGSPNRNIGVITASLGRARYDRTKQAVIHSHNIYARHAVTHFSVIEKYQTCADKIP 235 Query: 229 -ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGD------REFDRQLTEAGTGLNRLF 281 A+L+ C TGRTHQIRVH + GHP+ D YG+ FD + EA NR Sbjct: 236 FASLLECRLETGRTHQIRVHMAHIGHPLVGDTVYGNAFKTKSNRFDSTIKEAIDLFNRQA 295 Query: 282 LHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNAR 319 LHAA+L F HP G +M AP+ + + + + Sbjct: 296 LHAASLTFEHPAKGNIMSFSAPLPQDMAELINHFKKLN 333 >UniRef50_A5WCP4 Pseudouridine synthase n=15 Tax=Moraxellaceae RepID=A5WCP4_PSYWF Length = 364 Score = 335 bits (861), Expect = 9e-91, Method: Composition-based stats. Identities = 145/316 (45%), Positives = 200/316 (63%), Gaps = 23/316 (7%) Query: 4 ETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAG 63 + V + +T ++ GQRIDNFL +LKG+P++ IY+++R EVR+N KR KP LE G Sbjct: 58 DFGQVNHLEVTRNQHGQRIDNFLLARLKGMPRAHIYKMIRSDEVRINNKRCKPYDNLERG 117 Query: 64 DEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV 123 D VRI PV++A RE+ +S K +L + ++YED+ ++VLNKPSG AVHGGSGL FGV Sbjct: 118 DVVRIAPVKLATREKPVISEGFAK--SLLERVVYEDEGLIVLNKPSGMAVHGGSGLDFGV 175 Query: 124 IEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 IE +R + ++LELVHR+D+DTSG+L++AKKRS L+ L E LREK +QK YL LV+GQ Sbjct: 176 IEAMRDATSK-KYLELVHRIDKDTSGLLMIAKKRSTLKVLQEYLREKTIQKHYLCLVKGQ 234 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVS---QEGKPSETRFKVEERYA----FATLVRCSP 236 + + APLL+ + +GER V+V E K S+T KV R+ +L+ P Sbjct: 235 PALNEFEIDAPLLRYTVANGERRVKVDKANPEAKLSQTTCKVLARFKMNGEPVSLIEAMP 294 Query: 237 VTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGE 296 TGRTHQIRVH Y GHPI DD+Y ++ +G+ RL LHA L E Sbjct: 295 HTGRTHQIRVHLAYLGHPILGDDKYNIKD--------TSGVRRLCLHAWQLDVP-----E 341 Query: 297 VMRIEAPMDEGLKRCL 312 I+AP+ E ++ L Sbjct: 342 YEVIKAPLPEDMQSLL 357 >UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B8FT16_DESHD Length = 334 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 102/309 (33%), Positives = 149/309 (48%), Gaps = 28/309 (9%) Query: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDE--VRIPPVRVAE 75 G R+D + ++ G +S I ++ +G V VN K YK+ A D+ V IPP R + Sbjct: 41 EGTRLDVGVTERV-GKSRSFIQGLIEEGHVLVNGAARKANYKVRAMDQIAVVIPPPRELK 99 Query: 76 REEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR---- 131 E E + ILYED+ +LV+NK G VH G + Sbjct: 100 VEAENI----------PLEILYEDEDVLVVNKSQGMVVHPAPGAWTKTLVNALLYHCRNL 149 Query: 132 ---PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHV 188 +VHR+D+DTSG+L+VAK A + L EQ++ M + YLA+V G Sbjct: 150 SGINGVLRPGIVHRIDKDTSGLLVVAKNDLAHQGLAEQIKAHSMARRYLAIVHGVVFEPS 209 Query: 189 KSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHT 248 +V+AP+ ++ +++ V Q K + T ++V ER+ TL+ TGRTHQIRVH Sbjct: 210 GTVEAPIGRDPADR-KKMAVVFQNAKEAVTHYEVLERFRDFTLLEARLETGRTHQIRVHM 268 Query: 249 QYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGL 308 Y HP+ D YG R + GL LHA L F HP +GE M AP Sbjct: 269 AYLKHPVLGDPLYGPR-------KNPFGLQGQMLHAQLLGFQHPRSGEYMEFSAPASGMF 321 Query: 309 KRCLQKLRN 317 ++ L+++R Sbjct: 322 QKVLEEIRR 330 >UniRef50_P65834 Ribosomal large subunit pseudouridine synthase D n=321 Tax=Gammaproteobacteria RepID=RLUD_ECOL6 Length = 326 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 95/315 (30%), Positives = 152/315 (48%), Gaps = 21/315 (6%) Query: 12 AITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPP 70 ++ ++ GQR+D L +S I + V VN K KP+ K+ G++V I Sbjct: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN- 68 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV-IEGLRA 129 AE EEEA + + I+YED+ I+V+NKP VH G+G G + L Sbjct: 69 ---AEIEEEARF----EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLH 121 Query: 130 LRP---EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 P + +VHRLD+DT+G+++VAK A L E L+ + + ++Y A+ G + Sbjct: 122 YYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 +V P+ ++ + + V GKP+ T +++ E + T +R TGRTHQIRV Sbjct: 182 G-GTVDEPISRHPTKRTH--MAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 Query: 247 HTQYAGHPIAFDDRYGDREFDRQ-----LTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 H + HP+ D YG R + +R LHA L+ HP +G M Sbjct: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 Query: 302 APMDEGLKRCLQKLR 316 AP+ + + ++ +R Sbjct: 299 APIPQDMVELIEVMR 313 >UniRef50_Q0F3G4 Pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G4_9PROT Length = 315 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 131/317 (41%), Positives = 182/317 (57%), Gaps = 8/317 (2%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 M + ++ I ADE G R+D L L +++I R++RKG VR+NKKR KPE + Sbjct: 1 MASSVAENGVLTIGADEDGSRLDRVLSRHLGAGHRALILRLIRKGNVRLNKKRCKPETHV 60 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADV-ILYEDDHILVLNKPSGTAVHGGSGL 119 AGD+V +P E + +A + +LYEDD +LV+NKP+G VHGGSG Sbjct: 61 AAGDQVFLPVSLREPDTMERAPVSASLLGKMASIPVLYEDDSLLVVNKPAGMVVHGGSGH 120 Query: 120 SFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 G+IE L+ R L L HRLDRDTSGVLL+AK ALR L E RE+ MQK Y AL Sbjct: 121 EAGLIEALKQSRG-LDDLRLAHRLDRDTSGVLLMAKHLDALRRLTESFRERDMQKTYFAL 179 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVE---ERYAF-ATLVRCS 235 + G +H + + L K +++ GER+V S+EGK S T ++V ER+ F +V + Sbjct: 180 IAGHPYAHAGRMSSNLAKGVVRGGERMVVDSEEGKASVTDYQVMIEYERHGFPYAMVALN 239 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTG 295 P +GRTHQ+RV Q+ GHPI D +YG++ + G L LHA L+FTHP +G Sbjct: 240 PHSGRTHQLRVQLQHEGHPILGDGKYGEKA--QLAAYKSLGGKGLMLHAWRLRFTHPVSG 297 Query: 296 EVMRIEAPMDEGLKRCL 312 + + +AP + L Sbjct: 298 KSLECKAPWPDNWSALL 314 >UniRef50_A7NB61 Pseudouridine synthase n=18 Tax=Francisella RepID=A7NB61_FRATF Length = 332 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 93/325 (28%), Positives = 161/325 (49%), Gaps = 19/325 (5%) Query: 1 MKTETPSVKI---VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPE 57 M T S + + + +AG+RID + Q + ++ I + L++G + VN + KP+ Sbjct: 1 MAHNTLSNRFHQNIIMHPKDAGKRIDVAINEQFEQFSRAQIQKWLKEGSITVNGRATKPK 60 Query: 58 YKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGS 117 + + +EV I + E A +L+ I++EDD I+V++KP VH G+ Sbjct: 61 HIVLGDEEVEINIELLPTNEWIAEDINLK--------IIFEDDDIIVIDKPVNMIVHPGA 112 Query: 118 GLSFGVIEGLRALRPEAR----FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQ 173 G G + R + + +VHRLD+DTSG+++ AK A +L +QL E+ + Sbjct: 113 GNPTGTVSNALLHRYKDQDKLPRAGIVHRLDKDTSGLMVAAKSSIAYHNLVQQLAERKVS 172 Query: 174 KDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVR 233 + YLA+V G+ ++ P+ ++ + + ++ GK + T + E Y TL+ Sbjct: 173 RKYLAIVEGEIYQ-QGTINQPIGRDPTNRTK--MAINYRGKEAITYYTPIEVYDGFTLIE 229 Query: 234 CSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPG 293 C TGRTHQIRVH + HP+ D Y ++ + A T R LHA L F HP Sbjct: 230 CQLETGRTHQIRVHMKSIKHPLVGDQTY-NKSSTKLEKLAITIPTRQALHAYKLSFIHPT 288 Query: 294 TGEVMRIEAPMDEGLKRCLQKLRNA 318 T ++++ ++ + E + +L Sbjct: 289 TAKMVKFKSKLPEDMLNLKAQLEQT 313 >UniRef50_A3EQJ0 Pseudouridine synthase n=1 Tax=Leptospirillum rubarum RepID=A3EQJ0_9BACT Length = 339 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 104/342 (30%), Positives = 161/342 (47%), Gaps = 45/342 (13%) Query: 1 MKTETPSVKIVA-----ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK 55 + E P+ I++ + E +R+D +L G +S + R+L + V +N Sbjct: 6 LTEEDPNSNILSYREFLVPRGEQPKRLDIYLSKNCLGFTRSRVQRLLEEKLVTINDIYPA 65 Query: 56 PEYKLEAGDEVR--IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAV 113 +K+ GD +R IPP R + E + ILYED+ ++V++KP G V Sbjct: 66 SSHKVRGGDRIRVLIPPPRSQTAQPENI----------RLEILYEDEDLIVISKPPGLVV 115 Query: 114 HGGSGLSFGVIEGLRALRPEARF-------------------LELVHRLDRDTSGVLLVA 154 H G S G + +++ LVHRLD+DTSGV++V Sbjct: 116 HPAPGHSSGTLVNGLLFHFQSQGDEQKKGEPEEEEEAERPLRAGLVHRLDQDTSGVMVVG 175 Query: 155 KKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGK 214 K S + L Q +++ + K YLALV+G + AP+ ++ + VR Q+GK Sbjct: 176 KTESVVLDLMNQFKDRSVSKKYLALVKGILPKKRGEINAPIGRSTHDRKKFTVR--QDGK 233 Query: 215 PSETRFKVEERY-AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEA 273 PS TR++V E Y +L+ + +TGRTHQIRVH +Y G P+ D YG + + + Sbjct: 234 PSVTRYRVLETYHENYSLLEVTLLTGRTHQIRVHFRYLGFPLLGDAVYGSKGTENK---- 289 Query: 274 GTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 R LHA L F HP + M EAP+ L++L Sbjct: 290 --NFPRQMLHAWKLSFQHPSSNSKMEFEAPLPPDFVSALERL 329 >UniRef50_C7RM94 Pseudouridine synthase n=11 Tax=Proteobacteria RepID=C7RM94_9PROT Length = 375 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 95/311 (30%), Positives = 150/311 (48%), Gaps = 18/311 (5%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKR-IKPEYKLEAGDEVRIP 69 + + GQR+D L L +S + +R+G V V ++P ++L G+ + + Sbjct: 31 LRVPTACGGQRLDQVLARLLSQHSRSRLQDWIREGRVAVGGAVTVEPRFRLWGGETIAL- 89 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLR 128 + EA +P + I++EDD ++VL+K +G VH GSG G + GL Sbjct: 90 -TESTDERAEASAPE-----EIPLRIVFEDDTLIVLDKQAGLVVHPGSGNWRGTLLNGLL 143 Query: 129 ALRPE---ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 P+ +VHRLD+DT+G+++VAK A L QL+ + +++ Y ALVRG Sbjct: 144 HHAPQLARVPRAGIVHRLDKDTTGLMVVAKTLEAQTDLVRQLQARSVKRCYQALVRGIV- 202 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245 V AP+ ++ + V G+P+ T ++V ER+ TL+ C+ TGRTHQIR Sbjct: 203 EGAGIVDAPIGRHPTVRTR--MAVVSGGRPARTHYRVLERFVACTLIECALETGRTHQIR 260 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMD 305 VH HP+ D YG G R LHA L HP +G+ M + + Sbjct: 261 VHMTSIAHPLVGDPIYGGGA---SRVPQGAVFPRQALHACRLALVHPASGKAMLWRSGVP 317 Query: 306 EGLKRCLQKLR 316 + + +LR Sbjct: 318 ADMAALIDRLR 328 >UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NEP8_9LACT Length = 308 Score = 333 bits (855), Expect = 4e-90, Method: Composition-based stats. Identities = 98/303 (32%), Positives = 153/303 (50%), Gaps = 27/303 (8%) Query: 20 QRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEE 79 QR+D L +L G+ ++ I L+ G + VN + +K YK ++GDEV I ++EE+ Sbjct: 16 QRLDKVLTGEL-GLSRTTIQSWLKAGLISVNGEVVKSNYKAQSGDEVTI-----LQKEED 69 Query: 80 AVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRP------- 132 ++ + + I++EDD ++V+NKPSG VH G G + Sbjct: 70 VITIQPEN---IPLDIVFEDDSLIVVNKPSGMVVHPSKGHYSGTLVNALLYHSNSLSDST 126 Query: 133 --EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKS 190 E LVHR+D+DTSG+L++AK + L EQ+ E M ++Y+A+V G + Sbjct: 127 SEEIYRPGLVHRIDKDTSGLLVIAKNNDVHQKLAEQIAENKMNREYIAIVDGHFAHETGV 186 Query: 191 VQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQY 250 V APL ++ +R+ V + GK + T F+V + ++ +LV C TGRTHQIR H ++ Sbjct: 187 VDAPLSRHQTNRLKRV--VEKGGKNAITHFEVLDSFSDYSLVSCRLETGRTHQIRAHMEF 244 Query: 251 AGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKR 310 HPI D Y + + FLHA L FTHP TGE + + + Sbjct: 245 IKHPIVNDPLYHPKGKNATEF-------GQFLHARTLSFTHPLTGETLNFQVEPPKEFAE 297 Query: 311 CLQ 313 +Q Sbjct: 298 FIQ 300 >UniRef50_Q01Q94 Pseudouridine synthase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Q94_SOLUE Length = 296 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 100/312 (32%), Positives = 145/312 (46%), Gaps = 25/312 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + GQRID +L L +S I ++ VRVN +K Y L A D V + Sbjct: 3 FTADPADTGQRIDQWLHAHLPDFSRSRIQEWIKSARVRVNGAAVKTSYTLRAADAVEV-- 60 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 E P + ILYED ++ ++KP+G VH G+G+ G + Sbjct: 61 ------EPADPPPLNATAEDIPLRILYEDADVVAIDKPAGMVVHAGAGVHSGTLVNALLH 114 Query: 131 R-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 R +VHRLDR TSGVLLVAK +A + L Q + ++K YLALV G Sbjct: 115 RFATLSGVGGPLRPGIVHRLDRFTSGVLLVAKNDAAHQKLAAQFSGREIEKVYLALVHGT 174 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 + ++ P+ ++ + R++ EG+ + + ++V R+ TL+ TGRTHQ Sbjct: 175 VKPETGRIERPIARDPVHRARMTARLA-EGRAAWSEYRVLRRFPDFTLLEVRIGTGRTHQ 233 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH HP+ D YG A L R FLHA ++F P +G M IE+P Sbjct: 234 IRVHLASIRHPVVGDTLYG--------APAQPLLGRYFLHAHRIRFHLP-SGREMLIESP 284 Query: 304 MDEGLKRCLQKL 315 + L+ L L Sbjct: 285 LPPDLEAWLGTL 296 >UniRef50_P74346 Uncharacterized RNA pseudouridine synthase slr1629 n=19 Tax=Bacteria RepID=Y1629_SYNY3 Length = 327 Score = 333 bits (854), Expect = 6e-90, Method: Composition-based stats. Identities = 95/329 (28%), Positives = 156/329 (47%), Gaps = 28/329 (8%) Query: 3 TETPSVKIVAITADEA-----GQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KP 56 T++ + + +TAD G R+D +L QL + +S +++ G+V+ N Sbjct: 10 TDSDPYQELLVTADGVAEGTLGVRLDKWLAEQLPELSRSRCQKLIESGQVQRNGLVCQDK 69 Query: 57 EYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGG 116 L+ GD + + + P + ILYED+ ++++NKP+G VH G Sbjct: 70 NLILKTGDRLVVNIPELI--------PLDVVAQNIPLDILYEDEQLIIINKPAGLVVHPG 121 Query: 117 SGLSFGVI-EGLRALRPE------ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRE 169 G G + L A P+ + +VHRLD+DT+G ++VAK AL +L QL+E Sbjct: 122 PGHPDGTVVNALLAHCPDLAGIGGVQRPGIVHRLDKDTTGAMVVAKTELALHNLQVQLKE 181 Query: 170 KGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGER-IVRVSQEGKPSETRFKVEERYAF 228 K ++ Y +V G + +V P+ ++ + IV V + G+ + T +++ ER Sbjct: 182 KTARRLYWGIVYGSPKEIQGTVNLPVGRHPGDRQKMGIVPVEKGGREAVTHWRLLERIGN 241 Query: 229 ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALK 288 + + TGRTHQIRVH++ GHP+ D+ Y L LHA L Sbjct: 242 HSWLEFQLETGRTHQIRVHSKQMGHPLVGDNLY------TSPGSVNVNLPGQALHAHQLS 295 Query: 289 FTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 HP +GE++ APM ++ L LR Sbjct: 296 LIHPVSGEIITAIAPMPAHFEKLLVYLRQ 324 >UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LPH5_SYNFM Length = 344 Score = 333 bits (854), Expect = 6e-90, Method: Composition-based stats. Identities = 99/328 (30%), Positives = 159/328 (48%), Gaps = 21/328 (6%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 +P + +E +R+D FL + +S + +++R+G V VN +K Y++ Sbjct: 3 TRNSPPDLTFHVDVEEKLRRLDVFLSARSPDCSRSQVQKLIREGRVTVNGLPVKASYEIR 62 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 +GD + + EAV + + IL+EDD +LVLNK G VH G+G Sbjct: 63 SGDCIAVWL-------PEAVGEDSLQPRPMPLEILFEDDDVLVLNKAPGVIVHPGAGHEE 115 Query: 122 GVI-EGLRAL------RPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQK 174 G + GL A R R +VHRLDR TSG L+VAK A L Q + + K Sbjct: 116 GTLVHGLLAHCSRLASRGAPRRPGIVHRLDRGTSGALMVAKSERAYLELIRQFKHHEVGK 175 Query: 175 DYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRC 234 +YLALV G ++ + ++ + +R+ + + G+ + +++KV + +L+R Sbjct: 176 EYLALVYGTMAGASGEIRTGMGRHPVDR-KRMAVLEKGGREAVSQWKVAVAWGEVSLLRV 234 Query: 235 SPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQ------LTEAGTGLNRLFLHAAALK 288 TGRTHQIRVH + HP+ D+ YG + + L E ++R LHA L Sbjct: 235 VIKTGRTHQIRVHLSHMQHPVVGDETYGGGKRKARAVKSDVLRELLMEVDRQMLHAVGLA 294 Query: 289 FTHPGTGEVMRIEAPMDEGLKRCLQKLR 316 F HP +G + AP+ L+++R Sbjct: 295 FRHPVSGADLSFTAPLPPDFAGLLERIR 322 >UniRef50_D0KVM5 Pseudouridine synthase n=11 Tax=Proteobacteria RepID=D0KVM5_HALNC Length = 340 Score = 332 bits (853), Expect = 7e-90, Method: Composition-based stats. Identities = 98/320 (30%), Positives = 151/320 (47%), Gaps = 20/320 (6%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 + + I + AGQR+D L +S I ++ GE+ ++ + +P + G+ V + Sbjct: 5 ETLLIPPECAGQRLDQALAKCWPDYSRSRIQDWIKSGEILLDGEVARPRATVLGGESVEL 64 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGL 127 +AE EE + + I+YEDD I+VLNK VH +G G + L Sbjct: 65 ----LAEIEEAVAA----VPQDIPLDIIYEDDAIIVLNKSPDIVVHPAAGNPDGTLVNAL 116 Query: 128 RALRPE---ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQW 184 P +VHRLD+ TSGV++VAK +A + L E L + ++++Y +V G Sbjct: 117 LFHDPSLVSVPRAGVVHRLDKQTSGVMVVAKTLAAHKILVENLAARKIRREYDTVVMGHV 176 Query: 185 QSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQI 244 + +V AP+ ++ + V+ GK + T ++V + Y T +R TGRTHQI Sbjct: 177 VAG-GTVDAPIGRHPRDRQRQ--AVTATGKRAVTHYRVLQHYGEQTWLRVQLETGRTHQI 233 Query: 245 RVHTQYAGHPIAFDDRYGDR-----EFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RVH + HP+ D YG R L + R LHA L HP TG MR Sbjct: 234 RVHMAHIRHPVIGDPVYGGRPRIPPRASTALIDVLRHFERQALHARYLTLAHPVTGTQMR 293 Query: 300 IEAPMDEGLKRCLQKLRNAR 319 EAPM + ++ + L R Sbjct: 294 FEAPMPDDMRELIALLTEYR 313 >UniRef50_Q3AVX8 Pseudouridine synthase n=40 Tax=cellular organisms RepID=Q3AVX8_SYNS9 Length = 339 Score = 332 bits (853), Expect = 7e-90, Method: Composition-based stats. Identities = 92/305 (30%), Positives = 147/305 (48%), Gaps = 20/305 (6%) Query: 20 QRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEE 79 R+D +L +Q ++ I + + G VRVN K+ K + L GD+V++ Sbjct: 40 MRLDRWLVSQRTEQSRARIQKFIDAGYVRVNGKQGKAKTPLREGDQVQLWM-------PP 92 Query: 80 AVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRALRPEARF-- 136 K + +L+ED+HI+VLNK +G VH G G + GL P+ Sbjct: 93 PEPLPYLKPQPMDLDVLFEDEHIIVLNKSAGLTVHPAPGNKDGTLVNGLLHHCPDLPGIS 152 Query: 137 ----LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQ 192 +VHRLD+DTSG ++VAK + AL L Q++++ ++Y A+V G ++ Sbjct: 153 GKLRPGIVHRLDKDTSGCIVVAKSQEALVKLQVQIQKRVASREYFAVVHGVPDGDSGTII 212 Query: 193 APLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAG 252 + ++ + + V + G+ + T + + ER+ +L+R TGRTHQIRVH + Sbjct: 213 GAVGRHPVDRKKYAVVSDESGRYARTHWTLIERFGDYSLLRFKLDTGRTHQIRVHCAHIN 272 Query: 253 HPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCL 312 HP+ D Y + + L LHA L HP TGE M EAP+ +++ L Sbjct: 273 HPVVGDPTY------SRCRKLPLDLPGQALHAVQLGLDHPITGERMVFEAPLPPVMEKLL 326 Query: 313 QKLRN 317 LR Sbjct: 327 LVLRR 331 >UniRef50_C8PW17 Pseudouridine synthase n=5 Tax=Moraxellaceae RepID=C8PW17_9GAMM Length = 365 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 137/324 (42%), Positives = 199/324 (61%), Gaps = 26/324 (8%) Query: 4 ETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAG 63 + V + +T + QR+DNFL +LKG+P+S +Y ++R E+RVN KR KP KL+ Sbjct: 52 DFAKVNYLTVTRQQHDQRVDNFLLGRLKGLPRSHVYNMIRSDEIRVNGKRCKPHDKLQRN 111 Query: 64 DEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV 123 D VRI P+++A RE+ +SP +L + I+YED+ ++VLNKPSG AVHGGSG SFGV Sbjct: 112 DVVRIAPIKLATREKPVISPDF--AQSLLERIVYEDEGLIVLNKPSGMAVHGGSGESFGV 169 Query: 124 IEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 IE +R + ++LELVHR+D+DTSG+L++AKKRS L++L E LREK +QK YL LV G Sbjct: 170 IEAMREATGK-KYLELVHRIDKDTSGLLMIAKKRSTLKTLQEHLREKTLQKTYLCLVVGW 228 Query: 184 WQSHVKSVQAPLLKNIL------QSGERIVRV---SQEGKPSETRFKVEERY----AFAT 230 S +++ PLLK L +SGER V+V S++ KPS+T+ V +++ + Sbjct: 229 ISSETQTIDKPLLKYTLPATQEGKSGERRVKVDVKSEDSKPSQTQINVLQKFELNGQKVS 288 Query: 231 LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFT 290 L+ P+TGRTHQIRVH GHP+ DD+Y + + + + RL LHA L Sbjct: 289 LIEAKPLTGRTHQIRVHLASIGHPLLGDDKY-----NPNVAKGDKMVRRLCLHAYQLAIP 343 Query: 291 HPGTGEVMRIEAPMDEGLKRCLQK 314 E I A + ++ ++ Sbjct: 344 -----EYETITAELPVDMQNLIEN 362 >UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGS9_PLALI Length = 345 Score = 332 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 91/331 (27%), Positives = 153/331 (46%), Gaps = 26/331 (7%) Query: 4 ETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAG 63 + ++ + A G RID++L + R + +G+V VN +K +L Sbjct: 10 DDNPALVLTVEARAHGWRIDHYLSRLYPNFSRVAFQRTIEEGKVLVNGLPVKISRRLRVN 69 Query: 64 DEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV 123 D + ++ + + ILY+D+++ V+NK + VH G G G Sbjct: 70 DVIEFSLPAEPDQRVQP--------EDIPLDILYDDEYLCVINKTANMIVHPGRGNYRGT 121 Query: 124 IEGLRALRPEA-------RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDY 176 + G ++ +VHRLDRDTSGVL+VAK + + L Q E+ ++K+Y Sbjct: 122 LAGALQFHFDSLSDVAGQYRAGIVHRLDRDTSGVLVVAKDNTVHQHLSRQFEERSVEKEY 181 Query: 177 LALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQ--EGKPSETRFKVEERYAFATLVRC 234 A+V G+ Q V+ + + ++ ER++ + + T ++V++R+ T V+ Sbjct: 182 HAIVWGEMQFDADYVETYV-RVSFRNRERMMVCPPGDNARQAATFYEVQQRFRGFTYVKL 240 Query: 235 SPVTGRTHQIRVHTQYAGHPIAFDDRYGDRE--------FDRQLTEAGTGLNRLFLHAAA 286 P TGRTHQ+RVH + GHPI D Y + + T ++R LHA Sbjct: 241 QPQTGRTHQLRVHMHHLGHPIIADRLYEGKTCVKLSDILPETPEEADETLIDRQALHARR 300 Query: 287 LKFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 L F HP T + M EAP+ ++ L L+ Sbjct: 301 LAFNHPVTKKRMVFEAPLPADFQKTLDTLKT 331 >UniRef50_D1CBT6 Pseudouridine synthase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBT6_THET1 Length = 313 Score = 331 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 100/311 (32%), Positives = 158/311 (50%), Gaps = 22/311 (7%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 ++ I+ ++ G+R+D L +L+ V +S + R + +G + VN KP YKL GD + I Sbjct: 13 LLIISPEDVGERLDTLLAHKLESVSRSQVQRAIEQGTILVNDHPSKPSYKLREGDRILIL 72 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLR 128 + + E A+ P + ++YEDD I+V++KP+G VH G + L Sbjct: 73 TIPRVPQGEVALIPSY-----VDLRVVYEDDKIIVIDKPAGMVVHPSPGHYDNTLVNALI 127 Query: 129 ALRPE-----ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 A P+ +VHRLD+DTSG+++VA+ L L Q++ + + K+Y L G Sbjct: 128 ARYPDLLKQPTDRPGIVHRLDKDTSGLIIVARDLDTLNYLQGQMKARKIFKEYTLLCCGA 187 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 ++AP+ +++ + + V GK + T + + TL P+TGRTHQ Sbjct: 188 LDPPEGRIEAPIGRDLRDRTK--MSVIAGGKEAVTEYSTIQSLGKYTLAIARPITGRTHQ 245 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH GHPIA D YG+ + GLNR FLHA+ L P GE +P Sbjct: 246 IRVHFAAIGHPIAGDPIYGNCRLE--------GLNRQFLHASRLGVVMP-NGEYKEWHSP 296 Query: 304 MDEGLKRCLQK 314 + E L++ L+K Sbjct: 297 LPEDLRQSLEK 307 >UniRef50_Q2W2D5 Pseudouridine synthase n=39 Tax=Bacteria RepID=Q2W2D5_MAGSA Length = 505 Score = 331 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 95/324 (29%), Positives = 156/324 (48%), Gaps = 30/324 (9%) Query: 12 AITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGD--EVRI 68 A+ +EAG R+D +L +L + ++ I ++ G V + + I +++ G V + Sbjct: 191 AVEPEEAGTRLDRWLALRLPELSRTRIKGLMEDGRVSLEETTISDASLRVKPGQCFVVDV 250 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF-GVIEGL 127 PP A+ E + + A ++YED+ ++V++KP+G VH G ++ L Sbjct: 251 PPDAPAQPEPQDI----------ALTVVYEDEDLIVIDKPAGMVVHPAPGNPDETLVNAL 300 Query: 128 RALRPEA-------RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 A E+ + +VHR+D+DTSG+L+ AK +A R L Q +++ Y ALV Sbjct: 301 LAHCGESLAGIGGVKRPGIVHRIDKDTSGLLVAAKTDAAHRGLATQFAAHTLERAYWALV 360 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF--ATLVRCSPVT 238 G ++ + +N +++ V GKP+ TR++V + +A +LV C T Sbjct: 361 WGTPSPRQGEIEGNIGRNPNDR-KKMAVVKSGGKPALTRYRVLKSFAGGAVSLVECRLAT 419 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDRE------FDRQLTEAGTGLNRLFLHAAALKFTHP 292 GRTHQIRVH GHP+ D YG ++ A R LHA L F+HP Sbjct: 420 GRTHQIRVHMTTQGHPLVGDPVYGRIRGHKGVVLPPEVKTALIQFPRQALHAYLLGFSHP 479 Query: 293 GTGEVMRIEAPMDEGLKRCLQKLR 316 G +R E+ M + +Q L Sbjct: 480 TKGYDVRFESGMPLDINALMQILE 503 >UniRef50_C7H7W3 Ribosomal large subunit pseudouridine synthase D n=2 Tax=Faecalibacterium prausnitzii RepID=C7H7W3_9FIRM Length = 314 Score = 330 bits (847), Expect = 4e-89, Method: Composition-based stats. Identities = 99/319 (31%), Positives = 147/319 (46%), Gaps = 25/319 (7%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 + + A+ AGQRID FL + G+ +S + ++ +G V N K KL+AGD + + Sbjct: 4 REYIVEAEGAGQRIDRFLSGEDTGLSRSALQGLVAEGHVLCNGKAPAKSLKLKAGDIILL 63 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 E P + I+YED H+LV+NKP G VH G G + Sbjct: 64 --------EIPDAKPIEAVPQEIPLDIIYEDAHLLVVNKPKGMVVHPAPGNPDGTLVNAL 115 Query: 129 ALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 +VHR+D+DTSG+L+VAK + L +Q+ +++ Y +V Sbjct: 116 LWHCKGSLSGIGGEIRPGIVHRVDKDTSGLLVVAKDDATHIGLSQQMAVHSVERAYNTIV 175 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEG--KPSETRFKVEERYAFATLVRCSPVT 238 G + V++ L ++ + V + E K + T +KV ER T++ C T Sbjct: 176 YGGFAQDEGFVESNLGRSKTDRKKMAVYPASEPHTKYAYTGYKVLERLGEFTMLECRLKT 235 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM 298 GRTHQIRVH HP+A D YG T L+ LHA L F HP TGE + Sbjct: 236 GRTHQIRVHMASIHHPVAGDPVYGPHN-------CITSLHGQCLHAKTLGFIHPITGEHL 288 Query: 299 RIEAPMDEGLKRCLQKLRN 317 R ++ + + R L LR Sbjct: 289 RFDSELPDYFTRFLTTLRQ 307 >UniRef50_A9BMW0 Pseudouridine synthase n=10 Tax=Comamonadaceae RepID=A9BMW0_DELAS Length = 356 Score = 330 bits (847), Expect = 4e-89, Method: Composition-based stats. Identities = 100/317 (31%), Positives = 158/317 (49%), Gaps = 23/317 (7%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKR-IKPEYKLEAGDE 65 ++ + + + G R D L + +S + ++L +G V +N + +KP K+ AGD Sbjct: 45 ELREITVPPAQHGLRADKVLAECVAEFSRSYLQQLLAQGAVTLNGRVLVKPATKVAAGDR 104 Query: 66 VRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI- 124 + + E S Q +A ++YED+H+LV+NKP+G VH G G + Sbjct: 105 MVL------EMRPTQQSMAFQP-EDMALDVVYEDEHLLVVNKPAGLVVHPAPGNWTGTLL 157 Query: 125 EGLRALRPEARFL---ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 GL P+AR + +VHRLD+DTSG+++VA+ R+A+ +L + + + + YLAL Sbjct: 158 NGLLGRDPKAREVPRAGIVHRLDKDTSGLMVVARSRAAMDALVAMIAARDVSRQYLALAH 217 Query: 182 GQW-QSHVKSVQAPLLKNILQSGERIVR--VSQEGKPSETRFKVEERYAFATLVRCSPVT 238 W + V AP+ ++ V GK + T + +LVRC+ T Sbjct: 218 KAWGPRKHREVDAPIGRDPRNRLRMAVVDLAQHAGKTARTDIDLLAGNEEVSLVRCTLHT 277 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM 298 GRTHQIRVH GHP+ D YG +E G+ R LHA L FTHP TG+ + Sbjct: 278 GRTHQIRVHMASLGHPLVADAVYGGKEAG--------GMARQALHAFRLAFTHPMTGQAL 329 Query: 299 RIEAPMDEGLKRCLQKL 315 + AP+ + + L+ Sbjct: 330 VLRAPLPPDMAQALENW 346 >UniRef50_A3M2Y1 Pseudouridine synthase n=18 Tax=Gammaproteobacteria RepID=A3M2Y1_ACIBT Length = 350 Score = 330 bits (847), Expect = 4e-89, Method: Composition-based stats. Identities = 98/318 (30%), Positives = 150/318 (47%), Gaps = 20/318 (6%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 V + GQRID + + + +++G + VN +KP+Y+ E + + + Sbjct: 41 VQLDESYLGQRIDQVAAMVWSEFSREKLKQWMKEGHLLVNGNIVKPKYRCEGNETLTLNV 100 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRA 129 A+ + + I+YED+ ILV+NKP G VH G+G + + L Sbjct: 101 ELEAQTNSQP--------ENIPLDIVYEDEDILVINKPVGMVVHPGAGNTSSTLVNALLY 152 Query: 130 LRP---EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 P E LVHR+D+DTSG+L+VAK A SL +QL +K + + Y + G + Sbjct: 153 HSPKSAELSRAGLVHRIDKDTSGLLVVAKNLEAQFSLSKQLGDKSVYRIYDLVTYGNIIA 212 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 ++ P+ ++ + + + + G+ + T + V+ER+ T V+ TGRTHQIRV Sbjct: 213 G-GTIDEPIKRHPVDRVK--MAILPGGRDAVTHYNVKERFRDFTRVQAQLETGRTHQIRV 269 Query: 247 HTQYAGHPIAFDDRYGDR-----EFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 H Y GH + D Y +R L E G R LHAA L HP TGE M E Sbjct: 270 HFSYIGHGLVGDQVYMNRVRIPAGASELLIETLRGFKRQALHAAKLGLKHPRTGEEMLFE 329 Query: 302 APMDEGLKRCLQKLRNAR 319 AP E + + LR Sbjct: 330 APWPEDFTQLVNVLRTEN 347 >UniRef50_D2R7T3 Pseudouridine synthase, RluA family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7T3_9PLAN Length = 355 Score = 329 bits (845), Expect = 6e-89, Method: Composition-based stats. Identities = 106/324 (32%), Positives = 148/324 (45%), Gaps = 23/324 (7%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKR--IKPEYKLEAGDEVRI 68 + + EA R+D FL +L + + R++ G V +N R +K Y++ GD V I Sbjct: 39 LVVEEREADGRLDQFLALRLHRYSRMQLRRVIDAGGVLLNGSRAKVKVAYRVSTGDRVSI 98 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 + E +P + IL+ED+H++ +NKP G VH G G + Sbjct: 99 ---VLPEMPSAGPNPE-----KIPLDILFEDEHLIAVNKPPGMVVHPARGHWSGTLTSAL 150 Query: 129 ALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 A +VHRLDRDTSGV++VAK SL Q ++ K+Y A+ Sbjct: 151 AFHFQQLSTVGGQHRPGIVHRLDRDTSGVIIVAKTDPVHFSLAAQFADRTTAKEYFAITA 210 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRV-SQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 G V P+ + + +R + +ET F V ER+A V C P TGR Sbjct: 211 GVPDRDRDVVSQPIGIHPFHREKMAIRPGHSTSRDAETMFHVLERFAQHAAVECLPKTGR 270 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTG-----LNRLFLHAAALKFTHPGTG 295 THQIRVH + P+ D YG R Q G LNR LHA L HP TG Sbjct: 271 THQIRVHLAHVRTPVLCDKLYGGRAEITQGELVRDGSTEVVLNRQALHARKLSINHPKTG 330 Query: 296 EVMRIEAPMDEGLKRCLQKLRNAR 319 E + IEAP+ L+R L LR+ + Sbjct: 331 ERLTIEAPLPADLQRVLDLLRSTK 354 >UniRef50_UPI00016C3FBA ribosomal large subunit pseudouridine synthase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3FBA Length = 354 Score = 329 bits (845), Expect = 7e-89, Method: Composition-based stats. Identities = 99/338 (29%), Positives = 155/338 (45%), Gaps = 31/338 (9%) Query: 5 TPSVKI-----VAITADEAGQRIDNFLRTQLK-GVPKSMIYRILRKGEVRVNKKRI-KPE 57 TPSV+ + + G R+D +++ L +S++ R + G V +N + + KP Sbjct: 22 TPSVRFREPLDLLVMVKSEGMRLDQYVQLHLGADWSRSVVQRAIESGGVLLNGRPVLKPS 81 Query: 58 YKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGS 117 YK+ D + + + E E P + ILY+D+ + ++NKP+ VH Sbjct: 82 YKVRKNDRLHV---TMPEPTHEIPVPE-----DIPLDILYQDEWLALVNKPADMVVHPAK 133 Query: 118 GLSFGVIEGLRALRP--------EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRE 169 G G + +VHRLD+DTSGV+LVAK R L Q Sbjct: 134 GNWSGTLVNALQWHFREHLSTGAGHLRAGIVHRLDKDTSGVILVAKDDLTHRDLAMQFES 193 Query: 170 KGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFA 229 + + K+Y+A+ G+ + ++ L + + IV + K + + ++V ER+ Sbjct: 194 RKVFKEYVAIAAGELERDSDYIEGALKMHPYDRLKMIVSTDPDAKHALSYYEVLERFRGF 253 Query: 230 TLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDR--------QLTEAGTGLNRLF 281 TLV+ P TGRTHQIRVH + G + D YG R + E L R Sbjct: 254 TLVKVQPRTGRTHQIRVHLLHVGCAVLADKIYGGRAQVKLSEIAPGTPPAEDEVLLGRQA 313 Query: 282 LHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNAR 319 LHA L+F HP TG+ + EAP+ ++R L LR R Sbjct: 314 LHAFRLRFQHPRTGQWIEAEAPLPPDMRRTLDALRQHR 351 >UniRef50_Q2RQY9 Pseudouridine synthase n=3 Tax=Alphaproteobacteria RepID=Q2RQY9_RHORT Length = 330 Score = 329 bits (845), Expect = 8e-89, Method: Composition-based stats. Identities = 112/316 (35%), Positives = 165/316 (52%), Gaps = 11/316 (3%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 SV+ VA+T DE G R+D + + + + + ++LR G++RV+ KR+K +LEAG +V Sbjct: 2 SVETVAVTQDEDGSRLDRWFKRRYPALTHGRLEKLLRTGQIRVDGKRVKSGERLEAGQQV 61 Query: 67 RIPPVRVAEREEEAV------SPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 R+PP+ + ++ AL IL+ED H++V+NK +G AV GG+G Sbjct: 62 RVPPLGDEAPSPSSSGHAVPRPAAEGEIRALRRAILHEDAHLIVINKEAGLAVQGGTGTP 121 Query: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 + L +L LVHRLD+DTSGVL++A+ ++A R+L R + K Y A+V Sbjct: 122 HHLDGMLESLADGGETPRLVHRLDKDTSGVLVLARTQAAARALTSAFRSREALKVYWAIV 181 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFA-TLVRCSPVTG 239 G+ +++ L K GER+ +EGK + T F+V ++ A A V P TG Sbjct: 182 VGRPPMLQGTIKGALAKVAGGRGERMEINEEEGKRAVTDFRVVDQAAKACAWVELHPRTG 241 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RTHQ+RVH G PI D +YG E R+ LHA AL HP G V+ Sbjct: 242 RTHQLRVHCLEMGTPILGDGKYGG---PGAFLEGTELPKRMHLHARALALPHPAGG-VLE 297 Query: 300 IEAPMDEGLKRCLQKL 315 I AP L+ L Sbjct: 298 IIAPPPPHFVESLKTL 313 >UniRef50_B6AN83 Pseudouridine synthase n=2 Tax=Leptospirillum RepID=B6AN83_9BACT Length = 340 Score = 328 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 99/331 (29%), Positives = 156/331 (47%), Gaps = 40/331 (12%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 S + + E +R+D +L G +S + R+L + V +N +K+ GD + Sbjct: 17 SCREFLVPRGEQPKRLDIYLSRNCLGFTRSRVQRLLEEKLVTINDIYPASSHKIRGGDRI 76 Query: 67 R--IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI 124 R IPP R + E + ILYEDD ++V++KP G VH G + G + Sbjct: 77 RVLIPPPRSQAAQPEDIH----------LEILYEDDDLIVISKPPGLVVHPAPGHASGTL 126 Query: 125 EGLRALRPEARF-------------------LELVHRLDRDTSGVLLVAKKRSALRSLHE 165 +++ LVHRLD+DTSGV++V K + + L Sbjct: 127 VNGLLFHFQSQGDEQKKGEPEEEEEAERPLRAGLVHRLDQDTSGVMVVGKSETVVLDLMN 186 Query: 166 QLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEER 225 Q +++ + K YLALV+G + AP+ ++ + VR Q+GKPS TR++V E Sbjct: 187 QFKDRSVSKKYLALVKGILPKKRGEINAPIGRSTHDRKKFAVR--QDGKPSLTRYRVLET 244 Query: 226 Y-AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHA 284 Y +L+ + +TGRTHQIRVH ++ G P+ D YG + + + R LHA Sbjct: 245 YHENYSLLEVTLLTGRTHQIRVHFRHLGFPLLGDAVYGSKGMENR------NFPRQMLHA 298 Query: 285 AALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 L F HP + M EAP+ +++L Sbjct: 299 WKLAFQHPRSAAKMEFEAPLPPDFVSAMKRL 329 >UniRef50_D1RB31 Pseudouridine synthase n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RB31_9CHLA Length = 319 Score = 328 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 93/314 (29%), Positives = 147/314 (46%), Gaps = 27/314 (8%) Query: 11 VAITADEAGQRIDNFLRTQLK-GVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 I EAG R+D L + K ++ ++ KG V +N + +K +K GD+V + Sbjct: 12 FIIQEMEAGIRLDKVLADRYKSNGSRTYFQMLIEKGLVLLNGEPVKKRFKPNVGDDVELF 71 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV-IEGLR 128 E + + ILYED+H+L++NKP G VH G G + L Sbjct: 72 FAAAPEID--------LIPEQIPLNILYEDEHLLIINKPVGMVVHPAPGNWTGTFVNALL 123 Query: 129 ALRP--------EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 ++ +VHRLD++TSGVL+ AK S + L E + + K+Y A+ Sbjct: 124 YHCGYSLSDASVDSIRPGIVHRLDKETSGVLVAAKTLSVQQKLMELFAARQVYKEYWAIC 183 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 G + P+ ++ + + VR ++GK + T + E L + TGR Sbjct: 184 LGNP--GNCELNWPIGRHPIHRKQMTVR--EDGKEALTFCETLEVGNEICLAKLILSTGR 239 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH ++ GHPI D YG ++ + + R LHA L F HP T + + + Sbjct: 240 THQIRVHLKHKGHPILGDSIYGSKQVNMRYR-----AERQMLHARKLAFIHPITQQKIEV 294 Query: 301 EAPMDEGLKRCLQK 314 EAP+ ++ CL+K Sbjct: 295 EAPLPADMEECLRK 308 >UniRef50_C8PVB8 Pseudouridine synthase n=2 Tax=Moraxellaceae RepID=C8PVB8_9GAMM Length = 380 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 95/324 (29%), Positives = 158/324 (48%), Gaps = 25/324 (7%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 ++ + +++ G+RID + I L GE+ VN KP+Y+L+ D + Sbjct: 66 IQNYTVNSEQIGERIDKIAALVFSDYSREQIKNWLESGELTVNGAAQKPKYRLKPNDMLV 125 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EG 126 + A++++ + ILYED+ +LV+NKP G VH G+G G + Sbjct: 126 LKASLTAQQQDLP--------ENIPLDILYEDEAVLVINKPVGLVVHPGAGNGSGTLVNA 177 Query: 127 LRALRPEARFL---ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 L P++R L LVHR+D++TSG++++AK + L QL++K + + Y A+V Sbjct: 178 LLFHYPDSRTLPRAGLVHRIDKETSGLMVIAKDSQSQLHLINQLKDKSVYRLYQAIVLAS 237 Query: 184 WQS--HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFA-TLVRCSPVTGR 240 +++ AP+ ++ Q + + V GKP+ T + + A +LV TGR Sbjct: 238 AAELARHRTIDAPIGRHPTQRTK--MAVVSSGKPAVTHLEKITAISDAVSLVSVRLETGR 295 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAG--------TGLNRLFLHAAALKFTHP 292 THQIRVH G P+ D YG + L + R LHA L F HP Sbjct: 296 THQIRVHLSNLGFPLLGDPLYGAARKNAILLKTLDDDQKHIVQQFQRQALHAYELGFIHP 355 Query: 293 GTGEVMRIEAPMDEGLKRCLQKLR 316 TGE ++++A + E +++ L L+ Sbjct: 356 KTGEPIKVQARLPEDMQQLLDTLK 379 >UniRef50_A5GW76 Pseudouridine synthase n=1 Tax=Synechococcus sp. RCC307 RepID=A5GW76_SYNR3 Length = 316 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 93/305 (30%), Positives = 151/305 (49%), Gaps = 20/305 (6%) Query: 20 QRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEE 79 R+D +L +Q ++ I + + G VRVN + + L GDE+++ Sbjct: 22 MRLDRWLVSQRPEQSRARIQKFIEAGYVRVNGTTGRAKTPLRHGDEIKL------WMPPP 75 Query: 80 AVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRALRPEARF-- 136 P+LQ + +L+ED+H++V+NKP+G VH G G + GL P+ Sbjct: 76 EPLPYLQP-EPMDLDVLFEDEHLIVINKPAGLTVHPAPGNKDGTLVNGLLHHCPDLPGIS 134 Query: 137 ----LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQ 192 +VHRLD+DT+G +++AK + AL L Q++++ ++YLA+V G ++ Sbjct: 135 GKLRPGIVHRLDKDTTGCIVIAKSQQALVKLQVQIQKRVASREYLAVVHGVPAGESGTIV 194 Query: 193 APLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAG 252 + ++ + + V S G+ + T + ++ER +L+R TGRTHQIRVH + Sbjct: 195 GAIGRHPVDRKKYAVVSSDNGRYACTHWSLQERLGDYSLLRFKLDTGRTHQIRVHCAHRN 254 Query: 253 HPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCL 312 HP+ D Y + + L LHA L HP TGE M EAP+ E L++ L Sbjct: 255 HPVVGDPTY------SRCRKLPIELPGQALHAVQLGLDHPITGERMVFEAPLPEVLEKLL 308 Query: 313 QKLRN 317 LR Sbjct: 309 AVLRK 313 >UniRef50_B5JUW4 Pseudouridine synthase n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUW4_9GAMM Length = 321 Score = 327 bits (840), Expect = 3e-88, Method: Composition-based stats. Identities = 136/313 (43%), Positives = 186/313 (59%), Gaps = 12/313 (3%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 + + + + GQRIDNFL KGVP+S +YR+LRKGEVRVN R KP YKL++GD + Sbjct: 11 PTQKLTVPDEAVGQRIDNFLMGYWKGVPRSRVYRVLRKGEVRVNGGRKKPIYKLKSGDLL 70 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 R+PPVR+ + E V +A IL+ED+ +LV+NKPSG A H GSG+ FG+ E Sbjct: 71 RLPPVRIEPQGETEVP--AGAWREIAQRILFEDERLLVINKPSGMAAHAGSGVPFGIAEA 128 Query: 127 LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 + + + ELVHRLDR+TSG LL+AK RS L L + R++ K YLAL+ G + Sbjct: 129 VHQHHCDGKRTELVHRLDRETSGCLLLAKGRSVLNVLQDSFRQRETHKQYLALLVGDLK- 187 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA----FATLVRCSPVTGRTH 242 + V L K L SGE +V V + GK + + F+ Y TL R + TGRTH Sbjct: 188 GSRRVDLALQKTKL-SGEAMVVVDEAGKSALSDFEPLAHYPWNDRTLTLARVTIHTGRTH 246 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH + G P+ DD+YGD +R GL RLFLHA +++F P G+ + EA Sbjct: 247 QIRVHARALGLPLLGDDKYGDERLNRDAKR--QGLKRLFLHAESIRF--PLEGQTLYFEA 302 Query: 303 PMDEGLKRCLQKL 315 P+D L++ + L Sbjct: 303 PLDADLEQFINAL 315 >UniRef50_C8WW59 Pseudouridine synthase n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WW59_ALIAD Length = 314 Score = 327 bits (839), Expect = 4e-88, Method: Composition-based stats. Identities = 106/321 (33%), Positives = 162/321 (50%), Gaps = 30/321 (9%) Query: 11 VAITADEAGQRIDNFLRTQLKG----VPKSMIYRILRKGEVRVNK-KRIKPEYKLEAGDE 65 ++A++AG+R+D +L +L+ V ++ + R L G +R + R+K +EAGD Sbjct: 9 YEVSAEDAGERLDRWLTDRLQEDDIEVSRTQVQRWLDDGFIRRARPGRLKASDPVEAGD- 67 Query: 66 VRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI- 124 + V V E E + P + V+ YEDD ++V++KP G VH G+G G + Sbjct: 68 --LYEVDVPEEEPLELVPD----DGVPFVVAYEDDDVIVVDKPRGVVVHPGAGHMRGTLV 121 Query: 125 EGLRALR------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLA 178 GL A A +VHR+D+DTSG+++ AK A R+L E R ++++Y+A Sbjct: 122 NGLLARGTPLCTLAGALRPGVVHRIDKDTSGLVVFAKSDRAYRALVEAFRAHDVEREYVA 181 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVT 238 + G+ ++ P+ ++ VR Q GK + T F+V E +A + +R T Sbjct: 182 IAHGRMPHREGTIDMPIARDPADRQRMAVR--QGGKRAVTHFEVLESFAKYSYLRLRLET 239 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM 298 GRTHQIRVH GHPIA D YG R ++ LHA L FTHP G + Sbjct: 240 GRTHQIRVHLAAIGHPIAGDPVYGPRH--------TLPIDGQALHARTLGFTHP-DGRRL 290 Query: 299 RIEAPMDEGLKRCLQKLRNAR 319 R E+ + + R L LR R Sbjct: 291 RFESAVPSDMARLLDGLRQGR 311 >UniRef50_Q1ILA4 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILA4_ACIBL Length = 333 Score = 327 bits (839), Expect = 4e-88, Method: Composition-based stats. Identities = 95/331 (28%), Positives = 159/331 (48%), Gaps = 30/331 (9%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 + + ++AD+A R+D +L + L V ++ + ++ ++ V+ K KP YKL + + + Sbjct: 5 QHIQVSADDANIRLDQYLVSHLPDVSRARVQALIDDEKILVDGKSSKPSYKLRGSEVIDV 64 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG---------- 118 E P + ++YEDD + V+NKP+G VH G+G Sbjct: 65 V-------GEYQPPPLRAIPEDIPLDVVYEDDDLAVINKPAGMMVHVGAGATEEERNRGT 117 Query: 119 LSFGVIEGLRALR--PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDY 176 L ++ RAL +VHRLD++TSG+++VAK A R L EQ + + K Y Sbjct: 118 LVNALLYRFRALSEVGGDMRPGIVHRLDKETSGLIVVAKNDVAHRKLAEQFSSRRVHKKY 177 Query: 177 LALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEER----YAFATLV 232 +ALV G + ++ P+ +++ + R S G+ + + ++V+E+ Y LV Sbjct: 178 VALVHGWPKKLKGTINLPIARDMSRRTRMTTRGS-GGRDALSHYEVKEKIESPYGKFALV 236 Query: 233 RCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDR------EFDRQLTEAGTGLNRLFLHAAA 286 TGRTHQIRVH GHP+ D YG + + + L R FLHAA Sbjct: 237 EVKIETGRTHQIRVHMASLGHPVVGDTLYGAPGELRVTKALKGMPSKMASLERNFLHAAE 296 Query: 287 LKFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 ++ P TG+ +R + L+ + LR+ Sbjct: 297 IELQQPATGKALRFVTKVPAALEDFAETLRH 327 >UniRef50_Q1Q689 Similar to ribosomal large subunit pseudouridine synthase D n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q689_9BACT Length = 335 Score = 327 bits (838), Expect = 4e-88, Method: Composition-based stats. Identities = 95/336 (28%), Positives = 160/336 (47%), Gaps = 26/336 (7%) Query: 1 MKTETPSVKIVAITADEAG--QRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEY 58 ++ VK V + G +RID F+ ++ + ++ I +++++G + VN +K Y Sbjct: 5 LQESQAHVKEVTLEIKRVGESKRIDRFISSRFPDLSRTYIQKLVKEGAIVVNGNVVKSSY 64 Query: 59 KLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG 118 ++ GD + V EE ++P + I+YEDD+++++NKP VH G Sbjct: 65 FIKKGDVIS---ATVPVPEETKITPE-----DIPLNIIYEDDYLMLINKPYDMVVHPAGG 116 Query: 119 LSFGVIEGLRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG 171 G + +VHRLDRDTSGV+LV K + + Q ++ Sbjct: 117 HPSGTLVNAVTFYCQNLSQINGPLKAGIVHRLDRDTSGVMLVIKSDAVHSHIAMQFEKRL 176 Query: 172 MQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATL 231 ++K+Y A+V G+ + P+ ++ + + VR GK + + ++V ER+ TL Sbjct: 177 VKKEYFAVVEGEVAFDSNEINMPIGRHRVDRQKMAVR-RDTGKNATSVYEVIERFRGYTL 235 Query: 232 VRCSPVTGRTHQIRVHTQYAGHPIAFDDRY--------GDREFDRQLTEAGTGLNRLFLH 283 V+ P TGRTHQIRVH Q GHP+ D+ Y D + + G+ + R LH Sbjct: 236 VKIMPKTGRTHQIRVHMQAIGHPVVADEMYSKYNACFRSDLLGKERAPDEGSIIERQALH 295 Query: 284 AAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNAR 319 A ++F HP + M + M E + + LR R Sbjct: 296 AHRIEFFHPILNKQMAFQVDMAEDISFLVSALRELR 331 >UniRef50_C6XFD0 Pseudouridine synthase n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFD0_LIBAP Length = 340 Score = 327 bits (838), Expect = 4e-88, Method: Composition-based stats. Identities = 97/343 (28%), Positives = 151/343 (44%), Gaps = 39/343 (11%) Query: 4 ETPSVKIVAITADEAGQRIDNFLRTQLKG-VPKSMIYRILRKGEVRVNKKRIK-PEYKLE 61 S+KI ++ A RID +L T LK +S + ++ G + +N K P K+ Sbjct: 7 NCSSIKISLLSDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVV 66 Query: 62 AGDE--VRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGL 119 GD + +P + +E + ILYEDD I+V+NKP+G VH G Sbjct: 67 PGDSFLITVPAAQKLNIAQENI----------PLDILYEDDDIIVINKPAGLVVHPAPGN 116 Query: 120 SFGVIEGLRALRPEA--------RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREK- 170 G + + +VHRLD+DT+GV++VAK A + L EQ + Sbjct: 117 WTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHG 176 Query: 171 ---GMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVR--VSQEGKPSETRFKVEER 225 +++ Y A+V G + APL + R V+ + + T ++ E Sbjct: 177 KSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEI 236 Query: 226 YAF-----ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDRE------FDRQLTEAG 274 Y +L++C TGRTHQIRVH + G+P+ D YG + A Sbjct: 237 YNKNSNFAVSLLKCHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAI 296 Query: 275 TGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 L R LHA +L F+HP + M + P+ E + ++KL Sbjct: 297 LSLARQALHAHSLSFSHPRNNQDMDFQVPIPEDMLTVIRKLNE 339 >UniRef50_B6BTN1 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=B6BTN1_9PROT Length = 346 Score = 327 bits (838), Expect = 5e-88, Method: Composition-based stats. Identities = 106/326 (32%), Positives = 161/326 (49%), Gaps = 20/326 (6%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 T T K + I A G R+D L + +S I +++ + +N + YK+ Sbjct: 1 MTNTDFNKKLIIPATFFGSRLDAVLSNLVPEFSRSKIQSMIKNDLIFLNGSHVSQNYKVV 60 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 G+E+ I V E + A ++ I+YEDD ILVLNKP VH GSG + Sbjct: 61 GGEEIVINGVIEDEIDVIA--------ENISLDIVYEDDDILVLNKPYNLVVHPGSGNAN 112 Query: 122 GVI-EGLRALRPEARFL---ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 G + GL + L +VHRLD+DT+G+++VAK + +L QL+ K + ++Y Sbjct: 113 GTLLNGLLYYNKDLEKLPRGGIVHRLDKDTTGLMVVAKNEESQNNLISQLQSKSVYREYR 172 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPV 237 A+V GQ K +Q P+ ++ Q + V GK +ET+ ++ ER+ + T VRC Sbjct: 173 AIVWGQI-WQNKVIQKPIGRHPRQRTKMAVTKV-NGKDAETKLEILERFNYHTYVRCLLK 230 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREF------DRQLTEAGTGLNRLFLHAAALKFTH 291 TGRTHQIRVH PI D YG ++ + L ++ +R LHA AL H Sbjct: 231 TGRTHQIRVHMLDNNSPIVGDKDYGLKKIIPTKNMEMDLLKSIKNFDRQALHAIALGLIH 290 Query: 292 PGTGEVMRIEAPMDEGLKRCLQKLRN 317 P T + M+ + E +K L +R Sbjct: 291 PKTNKEMKWTIDLPEDMKELLSVIRK 316 >UniRef50_A7HV45 Pseudouridine synthase n=56 Tax=Alphaproteobacteria RepID=A7HV45_PARL1 Length = 482 Score = 326 bits (837), Expect = 5e-88, Method: Composition-based stats. Identities = 96/352 (27%), Positives = 158/352 (44%), Gaps = 47/352 (13%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKG---------VPKSMIYRILRKGEVRVNKKR---- 53 + V +TA++AG R+D +L L + ++ + +++ +G+V +K Sbjct: 133 ETRAVTVTAEDAGARLDKYLTEALGDKGEGDAPATLSRARMRQLIEQGQVSREEKAGAPK 192 Query: 54 --IKPEYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGT 111 P Y+++AG+ + + +P A+ I+YED ++V+ KP+G Sbjct: 193 LLTDPSYRVKAGERLSV--------SVPPPTPAKPAGQAIPLEIVYEDADLIVVMKPAGL 244 Query: 112 AVHGGSGLSF-GVIEGLRALRPE-------ARFLELVHRLDRDTSGVLLVAKKRSALRSL 163 VH G ++ L A E + +VHRLD++TSG+++VAK A + L Sbjct: 245 VVHPAPGNPDMTLVNALVAHCGETLSGIGGEKRPGIVHRLDKETSGLMVVAKTDRAHQGL 304 Query: 164 HEQL----REKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQE----GKP 215 Q R+ + + Y AL G Q+ +V A + ++ + + G+ Sbjct: 305 SAQFAAHGRDGKLTRAYTALTWGVPQTRKGTVDANIARSSHNRSKMATVRDRGEETGGRI 364 Query: 216 SETRFKVEERYAF--ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDR------EFD 267 + T + V+ YA V C TGRTHQIRVH GHP+ D YG + Sbjct: 365 AITHYTVKTDYADGLVAEVECRLETGRTHQIRVHMTALGHPLLGDATYGTGMKSRKSKLS 424 Query: 268 RQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNAR 319 + A LNR LHA L F HP GE M +AP+ E ++ ++ L R Sbjct: 425 PEAQAALERLNRQALHAHHLGFEHPVAGEKMSFDAPLPEDMQELVRALEGVR 476 >UniRef50_A3RGY8 Pseudouridine synthase n=1 Tax=uncultured bacterium RepID=A3RGY8_9BACT Length = 353 Score = 326 bits (836), Expect = 8e-88, Method: Composition-based stats. Identities = 93/324 (28%), Positives = 148/324 (45%), Gaps = 19/324 (5%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 +T + I AG+R+D L + V +S + + + G V VN ++ + L Sbjct: 26 APDTSPALTLRIDERYAGERLDKALAFLIPDVSRSRLQQWVVAGAVTVNGGAVRARHTLT 85 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 GD V++ P + P + +++EDD ILVLNKP VH +G Sbjct: 86 FGDVVKVTPQPAPDAAAYKPEP-------MPLEVIFEDDAILVLNKPPKLVVHPAAGHWS 138 Query: 122 GV-IEGLRALRP---EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 G + GL A P + +VHRLD DTSG+++VAK +A L QL+ + + ++Y Sbjct: 139 GTLLNGLLAYAPTLIDVPRAGIVHRLDADTSGLMVVAKTLAAQTDLVRQLQSRTVTREYW 198 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFA----TLVR 233 ALV G S + A + ++ V ++ KP+ T + + A + + Sbjct: 199 ALVLGVP-SQRGVIDAAIGRDPRNPLRFKVSTTEAAKPARTHYATLDSTKNAGADISWLA 257 Query: 234 CSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDR-QLTEAGTGLNRLFLHAAALKFTHP 292 C TGRTHQIRVH ++ GHP+ D Y R R + +R LHA L HP Sbjct: 258 CRLETGRTHQIRVHLEHVGHPLIGDPVYRRRLPPRGEPAARWKEFDRQALHACRLALDHP 317 Query: 293 GTGEVMR-IEAPMDEGLKRCLQKL 315 + + + +P L + + +L Sbjct: 318 VSRQRLNWFHSP-AADLAQLMHEL 340 >UniRef50_A0Z298 Pseudouridine synthase n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z298_9GAMM Length = 320 Score = 325 bits (835), Expect = 9e-88, Method: Composition-based stats. Identities = 158/308 (51%), Positives = 205/308 (66%), Gaps = 6/308 (1%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 V+ + +EAGQR+DNFL+ GVPK+ IYR +RKGEVRV+K R+KP+ +LEAG VR Sbjct: 18 VEWRVVLPEEAGQRLDNFLQRVRGGVPKTRIYRAIRKGEVRVDKGRVKPDTRLEAGVSVR 77 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 IPP+RV E+ E A + + L I+ E+ +LV+NKP G AVHGGSG++ G+IE L Sbjct: 78 IPPLRVPEKAEAAGAAGWR--TRLRASIIREESTLLVVNKPPGLAVHGGSGINVGLIETL 135 Query: 128 RALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 RA+ R+LELVHRLDRDTSG+LLVA++ S LR+LH LR G+ K YL LV G+W +H Sbjct: 136 RAMYETDRYLELVHRLDRDTSGLLLVARRASTLRNLHVLLRSNGIDKRYLCLVNGRWPAH 195 Query: 188 VKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVH 247 +K V APL K L SGER V+V+ G+ S T F+V R++ ATLV PVTGRTHQIRVH Sbjct: 196 LKRVDAPLEKFALPSGERRVKVAATGRQSLTTFRVVRRWSSATLVEAKPVTGRTHQIRVH 255 Query: 248 TQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEG 307 Q+AG PI D +Y D R + GL RLFLHAA+L F + +EA + Sbjct: 256 CQHAGFPILGDAKYADEAAVRIADK--LGLKRLFLHAASLNFR--LDDQNYSLEAGLPTE 311 Query: 308 LKRCLQKL 315 L+R L + Sbjct: 312 LERLLDAI 319 >UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae RepID=D1ANU4_SEBTE Length = 305 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 89/315 (28%), Positives = 160/315 (50%), Gaps = 28/315 (8%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 ++ + E G+R+D ++ + + ++ I ++++ G + VN K+ KP YK+E D + Sbjct: 1 MEKIIFEISEEGKRLDLYIAER-TELTRTRIQQLIKDGNINVNNKKSKPSYKVEKNDFIE 59 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG- 126 + + + +E + P + ILYED I V++K +G VH G G + Sbjct: 60 M---IIPDEKEIDLVPE-----NINIKILYEDSDIAVIDKEAGIVVHPSHGHESGTLVNA 111 Query: 127 -------LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 L + E R +VHRLD+DTSG+L++AK +A L E G++K Y+A+ Sbjct: 112 VMYHIKDLSGINGEIR-PGIVHRLDKDTSGLLIIAKNDTAHLRLSEMFGSSGIRKTYIAI 170 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTG 239 ++G+ ++ + ++ +++ V GK + T F+V ++ +LV+ + TG Sbjct: 171 LKGKINKESGKLETLIGRDPKDR-KKMAVVKTNGKTAITYFQVLDKNEKFSLVKVNIQTG 229 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RTHQIRVH +Y G+P+ D YG R LHA L+F HP T + M+ Sbjct: 230 RTHQIRVHMKYLGYPVLGDSVYG---------RDNKIAGRQMLHAYKLEFLHPVTQKAMK 280 Query: 300 IEAPMDEGLKRCLQK 314 I + + + ++ L++ Sbjct: 281 IISELPQDFEKALKE 295 >UniRef50_D0J9U5 Pseudouridine synthase n=2 Tax=Blattabacterium RepID=D0J9U5_BLASP Length = 344 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 102/323 (31%), Positives = 158/323 (48%), Gaps = 24/323 (7%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR--IPP 70 + + RID FLR ++ + ++ I + G++ VN+ IK YK++ D V I Sbjct: 10 VEKYQKTIRIDKFLRKSIQNISRNQIQKATNSGKILVNQCIIKKNYKIKPFDLVEAEIYY 69 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRA 129 + + E + + + ILYED+ ILV+NK +G VH G G G + G++ Sbjct: 70 PPILDSEYKNIIAE-----NIPLNILYEDEDILVINKAAGMVVHPGFGNEKGTLIHGIKY 124 Query: 130 LRPEAR---FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 L LVHR+D+DT+G+L++AK A + L +Q K +Q+ YLALV G Q Sbjct: 125 HFKNNHQLYRLGLVHRIDKDTTGLLVLAKNEYAQKYLFQQFISKTIQRKYLALVWGNIQK 184 Query: 187 HVKSVQAPLLKNILQSGERIV--RVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQI 244 ++ + ++ + R + S T +KV ER+ + T V C+ TG+THQI Sbjct: 185 QEGTISGFIGRDPNNRKRMTLFQRNFYRSRYSVTHYKVLERFKYLTYVSCNLETGKTHQI 244 Query: 245 RVHTQYAGHPIAFDDRYGD----------REFDRQLTEAGTGLNRLFLHAAALKFTHPGT 294 RVH +Y GHP+ D YG ++ ++ L R LHA +L F HP Sbjct: 245 RVHFKYLGHPLFNDSTYGGDKIFMKKYLSKKSIDFFKDSLNLLKRQALHAGSLSFIHPKN 304 Query: 295 GEVMRIEAPMDEGLKRCLQKLRN 317 + + E K+ LQKLRN Sbjct: 305 RKC-HFTCSIPEDFKKVLQKLRN 326 >UniRef50_B0TWR8 Pseudouridine synthase n=19 Tax=Francisella RepID=B0TWR8_FRAP2 Length = 309 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 131/308 (42%), Positives = 191/308 (62%), Gaps = 4/308 (1%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 V+++ + D QRIDNFL ++ +PKS+IYR +RKGE+RVNKKR+K ++ AGD VR Sbjct: 4 VQLIEVADDVIEQRIDNFLISKFSRLPKSLIYRWIRKGELRVNKKRVKQTTRVSAGDIVR 63 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 +PP + E E A + L ILYE D +V++KPSG AVHGGSG++ G++E L Sbjct: 64 VPPFSLEENLEIA-KVSKSHLDFLEQRILYETDDYIVVDKPSGMAVHGGSGVNSGLVERL 122 Query: 128 RALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 R LRP+ R L+LVHRLD++TSG +L+AKK S+L + +E+ + K Y ALV G W Sbjct: 123 RQLRPKVRRLDLVHRLDKETSGCVLLAKKHSSLVYFFDIFKERKVNKIYYALVHGHWDEK 182 Query: 188 VKSVQAPLLKNILQSGERIVRVSQ-EGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 V ++ PL + + G+RIV+V + EGK + TR ++ +L+ TGRTHQIRV Sbjct: 183 VDAIDLPLSRTETKDGQRIVKVDKREGKRALTRILAVQKIGDYSLLEIKLETGRTHQIRV 242 Query: 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDE 306 HT+ GHPI D +YG D++L G+++L LHA L+F +++ IEA +D Sbjct: 243 HTRAMGHPIVADKKYGYMVDDKKL--LAKGVDKLLLHAGKLEFYDEKQQKLISIEAKLDS 300 Query: 307 GLKRCLQK 314 ++ Sbjct: 301 RFDEFVKT 308 >UniRef50_B0VJ94 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJ94_9BACT Length = 351 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 91/329 (27%), Positives = 150/329 (45%), Gaps = 30/329 (9%) Query: 9 KIVAITADEAGQRIDNFLR--TQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 K+ I + QR+D FL + ++ I ++ + + VN +K Y L+ GDEV Sbjct: 11 KLKVIYTLQEMQRLDKFLAELKIQELYSRTFIEHLIEEDRILVNLTPVKKSYLLKEGDEV 70 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 I + E E V P + ++YED+++ ++NK +G VH G G G + Sbjct: 71 II---NLPEPEPMNVLPQ-----DIPLDVVYEDEYLAIINKKAGMIVHPGFGNPEGTLVN 122 Query: 127 LRALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLA 178 R E +VHRLDR TSG++++AK L + + ++K Y A Sbjct: 123 AILYRFGENLSSGKEFNRPGIVHRLDRGTSGLIIIAKNDLTHAKLSDMFARREIKKTYFA 182 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVT 238 + G + ++ L ++ R + V+ EG+ + T +K + + + LV +P T Sbjct: 183 ITTGIPEPEKGEIETYLARS--NKNPRTICVTNEGRYALTHYKTIKTWHYFALVEINPAT 240 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTG----------LNRLFLHAAALK 288 GR HQIRVH + +PI D Y R + + L L R LH+ L+ Sbjct: 241 GRMHQIRVHFAHIRYPILGDLLYNSRRYVQSLVPQNMKKKVTELLVNHLRRQALHSWKLE 300 Query: 289 FTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 F HP TG + + AP+ + ++ L L N Sbjct: 301 FFHPITGYPISVSAPIPDDIQYTLNWLDN 329 >UniRef50_C8QZ10 Pseudouridine synthase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZ10_9DELT Length = 324 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 107/323 (33%), Positives = 155/323 (47%), Gaps = 29/323 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKG---VPKSMIYRILRKGEVRVNK-----KRIKPEYKLEA 62 + EAG+R+D L T+ G + +S + ++R+G VRV +KP L+A Sbjct: 11 FVVAPHEAGRRLDLVLATRAAGSAELTRSRLQSLIRQGRVRVESAGVEAGPLKPGMLLKA 70 Query: 63 GDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS-- 120 GD V + E A LYED+ ILVL KP G VH G Sbjct: 71 GDRVDLQVPPPEATELVAEEVEFTP--------LYEDEDILVLVKPPGLVVHPADGHRQG 122 Query: 121 ---FGVIEGLRALRP--EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKD 175 G++ R L +VHRLD+DTSG L+VAK A +L +Q + + ++K Sbjct: 123 TLVHGLLHHCRNLSGISGQLRPGIVHRLDKDTSGCLVVAKNDLAHHNLVQQFKGREVEKT 182 Query: 176 YLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY-AFATLVRC 234 Y AL+RG V P+ ++ + + VR + G+ + T ++V +R+ A TLV Sbjct: 183 YQALLRGILAEDTGQVVLPIGRHPVHRKKMAVR-REGGREAVTHWRVRQRFSAGYTLVEL 241 Query: 235 SPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGT 294 TGRTHQIRVH GHP+A D YG + G++R +LHA L F HP + Sbjct: 242 LLETGRTHQIRVHMAALGHPLAGDRLYGRNPE----KDMPYGIDRQWLHAWRLAFNHPRS 297 Query: 295 GEVMRIEAPMDEGLKRCLQKLRN 317 G + AP+ L+ L +LR Sbjct: 298 GRRLTFTAPLWVDLQASLDRLRE 320 >UniRef50_Q03WF6 Pseudouridine synthase n=9 Tax=Firmicutes RepID=Q03WF6_LEUMM Length = 312 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 107/313 (34%), Positives = 160/313 (51%), Gaps = 22/313 (7%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 KI+ D+AG R+D L + ++ + L G + VN ++K YK+ +GD + I Sbjct: 4 KILIHITDQAG-RVDAVLSKENLSYSRTTLSNWLVDGTILVNNHKVKRSYKVVSGDTISI 62 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGL 127 P E + EA + L + D+I V+NKP G VH +G S G + L Sbjct: 63 TPPETQETKIEAENIPLDIIYEDDDII--------VVNKPQGMVVHPAAGHSSGTLVNAL 114 Query: 128 RALRP-----EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 P +VHR+DRDTSG+L+VAK A RSL EQL+ Q+ Y ALVRG Sbjct: 115 LHHSPLSTINGEFRPGIVHRIDRDTSGLLMVAKNDKAHRSLSEQLKSHKNQRVYYALVRG 174 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 ++ +++AP+ ++ + ++ V + G+ + T F+V +RY TL++ S TGRTH Sbjct: 175 EFTEDSGTIEAPIGRHKIDRKKQ--AVIEGGREAVTHFRVLKRYVGYTLLKVSLETGRTH 232 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH Y GHP+ D YG + GT LN LHA L P TG+ + ++ Sbjct: 233 QIRVHMSYIGHPVVGDPVYGTAQ-----KLDGTQLNGQLLHAKTLTLEQPTTGDELSFDS 287 Query: 303 PMDEGLKRCLQKL 315 P+ + + L L Sbjct: 288 PLPDYFQFALSTL 300 >UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_1758 n=3 Tax=Aquificaceae RepID=Y1758_AQUAE Length = 316 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 97/322 (30%), Positives = 144/322 (44%), Gaps = 22/322 (6%) Query: 6 PSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGD 64 V + +E R+D FL +S I +++++G V VN + + KP KL G+ Sbjct: 4 SEVLEFKVEGEEE--RLDKFLARAYPDFSRSYIKKLVKEGLVYVNGEEVRKPSRKLREGE 61 Query: 65 EVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI 124 V + V E E V P + I+YED+ I V+ KP G VH G + G + Sbjct: 62 RVIL---HVPEPEPLDVKPE-----NIPINIIYEDEDIAVVEKPCGLVVHPSPGYTSGTL 113 Query: 125 EGLRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 +VHRLD++T+GV+++AK +A R+L Q +E+ +K Y Sbjct: 114 VNALLYHIKDLSSIGGVERPGIVHRLDKETAGVMVIAKNNTAHRNLVRQFQERKTEKFYK 173 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFA--TLVRCS 235 LV+G + ++ P+ ++ + VR +EGK + T + V +RY TL++ Sbjct: 174 VLVKGLVKKDYGAIDTPIARHPVDRKRFWVR--KEGKEALTEYWVLKRYEKYEITLLKVK 231 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTG 295 TGRTHQIRVH GHP+ D YG + L A L F HP G Sbjct: 232 IHTGRTHQIRVHFASIGHPVLGDRTYGFKSSSVPKELLSLMGECNMLIAYHLGFYHPTKG 291 Query: 296 EVMRIEAPMDEGLKRCLQKLRN 317 E M E E K L Sbjct: 292 EWMVFEIEEPETFKSVYSWLEE 313 >UniRef50_A6SXT6 Pseudouridine synthase n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SXT6_JANMA Length = 342 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 90/322 (27%), Positives = 146/322 (45%), Gaps = 24/322 (7%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 + E P ++ + + D G R+D L T + +S + + + G V V+ + + + + Sbjct: 31 LALELPPIE-LDLNPDVCGVRLDKVLSTLVPQYSRSRLQQWIDGGHVSVDGEVARAKMTV 89 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 ++V I P E E K A+ I++ED +LV+NKP+G VH +G Sbjct: 90 YGDEKVVIYPQPAPEDE-------AFKPEAMDLAIVHEDAEMLVINKPAGLVVHPAAGNW 142 Query: 121 FGVI-EGLRALRP---EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDY 176 G + GL P +VHRLD+DTSG+++VAK A L QL+ + ++++Y Sbjct: 143 SGTLLNGLLHYLPSISGVPRAGIVHRLDKDTSGLMVVAKTLIAHTDLVRQLQARTVKREY 202 Query: 177 LALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEER----YAFATLV 232 LALV G + A + ++ + V + KP+ T F+ +L+ Sbjct: 203 LALVWGTPNI-TGKIDASIGRHARDRIKMAVSENLTAKPAVTHFQRLATGMLDGRPVSLM 261 Query: 233 RCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHP 292 C TGRTHQIRVH Q G + D YG + T R LHA L HP Sbjct: 262 LCRLETGRTHQIRVHMQSIGFALVGDGLYGKQHL-------TTVFPRQALHARRLGLIHP 314 Query: 293 GTGEVMRIEAPMDEGLKRCLQK 314 +GE + + + + + + Sbjct: 315 VSGEAVEWSSELPQDFAELIAR 336 >UniRef50_C8P3R0 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3R0_ERYRH Length = 308 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 100/325 (30%), Positives = 161/325 (49%), Gaps = 27/325 (8%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 MK E ++ + + G RID ++ + +S++ ++ G + VN +KP +L Sbjct: 1 MK-EVKNMNKLIVEEMFDGMRIDQYMALAVTDYSRSVLQTWIKNGNITVNGNVVKPNLRL 59 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 + D V E EE +S + I+YEDD ILV+NKP G VH Sbjct: 60 KEDDVVEY------EITEEQISI---VPVPMDLDIVYEDDAILVVNKPKGLIVHPSPSTL 110 Query: 121 F--GVIEGLRAL------RPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGM 172 ++ GL A +VHR+D+DT+G+L+VAK A L E L+++ + Sbjct: 111 NQPTLVHGLLAHTTQLSDLNGELRPGIVHRIDKDTTGLLVVAKTNEAHEILVEDLKQRLI 170 Query: 173 QKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLV 232 ++Y+A+V Q++ +V AP+ ++ ++ +R+ Q K + T F + ER+ +++ Sbjct: 171 SREYVAIVHHQFKHQSATVDAPIGRDP-KNRQRMAVTDQNSKQAVTHFYLAERFNDFSVL 229 Query: 233 RCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHP 292 RC TGRTHQIRVH QY HPI D Y + N LHA L THP Sbjct: 230 RCKLDTGRTHQIRVHAQYIKHPIVGDQTYSYKNTWET--------NGQCLHAQKLTLTHP 281 Query: 293 GTGEVMRIEAPMDEGLKRCLQKLRN 317 + EVM EA + + +K ++++R Sbjct: 282 VSKEVMTFEAELPQTMKDVIEEIRR 306 >UniRef50_Q87AR7 Ribosomal large subunit pseudouridine synthase D n=18 Tax=Gammaproteobacteria RepID=RLUD_XYLFT Length = 331 Score = 323 bits (829), Expect = 5e-87, Method: Composition-based stats. Identities = 98/315 (31%), Positives = 147/315 (46%), Gaps = 20/315 (6%) Query: 12 AITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPV 71 + AG+R D L +S + ++ G+V +N ++P + G+ V + + Sbjct: 17 TVPDGAAGRRFDAVLAELFPEFSRSRLTEWIKSGDVLLNGVLVRPRDPVYGGEVVWLQVM 76 Query: 72 RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR 131 + + ILYED+H+ V+NKP+G VH G+G G + R Sbjct: 77 PDIRTD--------AVPQDIPLDILYEDEHVFVINKPAGLVVHPGAGNPDGTLVNALLHR 128 Query: 132 PEA----RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 A +VHRLD+DTSGV++VA+ A +L EQL + + + YLA+V S Sbjct: 129 DPALAAVPRAGVVHRLDKDTSGVMVVARTLQAQTALVEQLSSRQVHRQYLAVVVSALVSG 188 Query: 188 VKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVH 247 +V A + ++ + VS GK + T +++ ER+ T + C TGRTHQIRVH Sbjct: 189 -GTVNAAIERHPRDRLR--MEVSDTGKEAVTHYRLRERFRAHTALECRLDTGRTHQIRVH 245 Query: 248 TQYAGHPIAFDDRYGD-----REFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 + HPI D YG + L G R LHA L+F HP +RI A Sbjct: 246 MAHLRHPIVGDRLYGGSLKLPKGGTDALVAMLRGFKRQALHAEVLEFLHPVRALPVRIVA 305 Query: 303 PMDEGLKRCLQKLRN 317 P+ E L + L LR Sbjct: 306 PVPEDLCQLLAALRE 320 >UniRef50_A5EXY5 Pseudouridine synthase n=2 Tax=Cardiobacteriaceae RepID=A5EXY5_DICNV Length = 313 Score = 323 bits (828), Expect = 6e-87, Method: Composition-based stats. Identities = 131/315 (41%), Positives = 189/315 (60%), Gaps = 8/315 (2%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 + + V + ++A +AGQR+DNF+R +PKS IY++LRKGEVR NKKR+KP K+ Sbjct: 3 QIDAHRVHFMTVSAADAGQRVDNFIRKYHPALPKSRIYQMLRKGEVRRNKKRVKPTDKIC 62 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 AGD +R+PP+ A+R + A+ + QK + +LYEDDH L+LNKP+G VHGGSG F Sbjct: 63 AGDVIRLPPIINAQRADVAIPIYWQK--RIEAAVLYEDDHFLILNKPAGIVVHGGSGHEF 120 Query: 122 GVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 GVI+ +R++ E + EL HRLD DTSGVL++ K R AL + + E ++K Y ALV Sbjct: 121 GVIDVVRSIWGEN-YAELAHRLDGDTSGVLVLGKHRQALNAFQTAMNEGTVEKRYWALVD 179 Query: 182 GQWQSHVKSVQAPLLKNILQSGERI-VRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 G W V L K L E++ V + + + T F V +R+ ATL+ TGR Sbjct: 180 GVWTREEAEVVVHLTKAPLNVREKMQVSELENAQFARTWFYVLQRWQDATLMEAVLDTGR 239 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRV + H IA D +YG REF+ + + G + LFLHA +KF + + + Sbjct: 240 THQIRVSAAHCQHAIAGDKKYGKREFNDLVRKK--GFHGLFLHAREIKFC--YQNQTIHV 295 Query: 301 EAPMDEGLKRCLQKL 315 AP+ E +++ L+ Sbjct: 296 MAPLTEAMQQLLEHW 310 >UniRef50_Q2S3B7 Pseudouridine synthase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3B7_SALRD Length = 349 Score = 323 bits (828), Expect = 7e-87, Method: Composition-based stats. Identities = 93/347 (26%), Positives = 148/347 (42%), Gaps = 50/347 (14%) Query: 14 TADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRV 73 + G RID +L ++ I R ++KG ++VN +K Y +E GDE+ +R Sbjct: 3 ETETGGPRIDKYLTRFYPEASRTKIQRAIKKGHLKVNGTDVKKSYGVEPGDEIVFRLIRK 62 Query: 74 AEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPE 133 P + A+ +++E D +LV+NKP+G VH G G + + Sbjct: 63 --------PPMQAEPEAIPLDVVHEGDDLLVVNKPAGMVVHPAPGHRSGTLVHALLHHVD 114 Query: 134 AR---------------------------------FLELVHRLDRDTSGVLLVAKKRSAL 160 +VHRLD+ TSG+L+VAK+ A Sbjct: 115 GGEVAADDERDEVSEDEVGLSLVNALPQSPDHPVVRPGIVHRLDKGTSGLLVVAKRGRAH 174 Query: 161 RSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRF 220 + L EQ + + + Y A+V G++ +++ + ++ V EGK + T + Sbjct: 175 QPLAEQFKAHTVDRRYRAIVWGRFAPSDGTIEGAIGRDPHHRQRMAVVPEDEGKWARTHY 234 Query: 221 KVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREF---------DRQLT 271 + E +A ++V TGRTHQIRVH + GHP+ D +YG + Sbjct: 235 ETVETHAHTSVVEFELETGRTHQIRVHARAQGHPLLGDPKYGGQRVRYGTQSGTRRTFYD 294 Query: 272 EAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNA 318 + L LHA L F HP T E +R EA +R L++LR Sbjct: 295 QLFETLPHPALHAYRLGFDHPTTEERLRFEADPPPAWRRVLRELRQE 341 >UniRef50_P50513 Ribosomal large subunit pseudouridine synthase D n=8 Tax=Sphingomonadales RepID=RLUD_ZYMMO Length = 317 Score = 323 bits (828), Expect = 7e-87, Method: Composition-based stats. Identities = 88/322 (27%), Positives = 145/322 (45%), Gaps = 25/322 (7%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKK---RIKPEYKLEAG 63 + V +T + G R+D L + + + + + ++ G V N + P +K+++ Sbjct: 2 PTEQVTLTEEMIGWRLDRALASLITRLSRERLKNLISSGCVS-NSQGALVRDPAFKIKSL 60 Query: 64 D--EVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 D V IP R A E + + I++ED+H+LV+NKP+G VH +G Sbjct: 61 DCFTVDIPLPRPAHNEPQDI----------PLEIVFEDEHLLVVNKPAGMVVHPAAGNYD 110 Query: 122 GVIEGLRALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQ 173 + +VHR+D+DTSG+L+VAK A L Q + + Sbjct: 111 NTLVNALLYHCAGKLSGIGGVARPGIVHRIDKDTSGLLVVAKTDPAHAGLAAQFADHSIN 170 Query: 174 KDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVR 233 + Y A+V G S V APL ++ + + + GK + T +++ A+L+ Sbjct: 171 RRYRAIVDGHP-SLQGHVDAPLARSSVNRQKMAIVSDGRGKRAVTHYRMITPLKNASLIE 229 Query: 234 CSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPG 293 C TGRTHQ+RVH GH + D YG + R LHAA L F HP Sbjct: 230 CRLETGRTHQVRVHMSSIGHSLLGDPVYGRSKKAHHALLQSLAFQRQALHAAHLGFIHPI 289 Query: 294 TGEVMRIEAPMDEGLKRCLQKL 315 +G+ + +A M + ++ + L Sbjct: 290 SGKQVDFDAEMPQDMQLLFKML 311 >UniRef50_Q6AJM1 Pseudouridine synthase n=1 Tax=Desulfotalea psychrophila RepID=Q6AJM1_DESPS Length = 327 Score = 323 bits (828), Expect = 7e-87, Method: Composition-based stats. Identities = 96/316 (30%), Positives = 156/316 (49%), Gaps = 27/316 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 +++ ++ G R+D FL L V +++I +K V V+ + K Y+L+ G+ V Sbjct: 21 FSVSYNQRGTRLDQFLAFSLPDVSRALITLSNKKELVLVDDEVKKSSYRLKEGETVTCAL 80 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRA 129 + E + +YEDD +LVL+KP G VH G+G + G + GL Sbjct: 81 WQAPPLSLEPQQVDFES--------IYEDDSLLVLSKPPGIVVHPGNGNTEGTLVHGLLY 132 Query: 130 LR------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 +A +VHRLD+DTSG ++VAK +LR+L + +E+ + K Y ALV G Sbjct: 133 HCREIGGVGDAIRPGIVHRLDKDTSGAMVVAKDERSLRTLVDSFKERQVYKVYHALVCGI 192 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY----AFATLVRCSPVTG 239 + + + AP+ ++ + +++ + GK + T ++V E + +L+R TG Sbjct: 193 PKKYEGRIVAPIGRHSVHR-QKMAISERTGKFAATNWQVVEVFETKDGPYSLLRVHIETG 251 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RTHQIRVH G PIA D YG + + R LHA+ L+ HP TG M Sbjct: 252 RTHQIRVHMSSIGCPIAGDQVYGSKRQN-------PAFARQMLHASRLRLPHPVTGRTMS 304 Query: 300 IEAPMDEGLKRCLQKL 315 AP+ + + L+ + Sbjct: 305 FTAPLWQDFQEVLEDM 320 >UniRef50_A1AVB5 Pseudouridine synthase n=2 Tax=sulfur-oxidizing symbionts RepID=A1AVB5_RUTMC Length = 303 Score = 322 bits (827), Expect = 8e-87, Method: Composition-based stats. Identities = 148/313 (47%), Positives = 201/313 (64%), Gaps = 15/313 (4%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 S+ + GQR+DN+L LKGVPKS I R++RKG VRVNK R K YKL D V Sbjct: 2 SISFQIVDEFSEGQRLDNYLLKILKGVPKSHICRVIRKGWVRVNKGRKKVSYKLILNDIV 61 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 RIPP++V+ + +S L+K+ L D LYED +L++NKPSG +VH GSG+ G+IE Sbjct: 62 RIPPIKVSIIKSIYISDSLKKL--LIDAKLYEDKGLLIINKPSGLSVHSGSGVDVGIIEA 119 Query: 127 LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 LR + + +ELVHRLDR TSGVLL+AKKRS L++LHEQL + ++K Y ALV+G W Sbjct: 120 LRQIY--KKPIELVHRLDRATSGVLLIAKKRSVLKNLHEQLSQHTVEKRYTALVKGVWSK 177 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF----ATLVRCSPVTGRTH 242 ++ APL +N R + V +GK + + F+ + ++ A+LV S TGRTH Sbjct: 178 KCHTIDAPLYQNS-----RYIMVDAKGKYAISHFQPLKNFSDGGFSASLVEISIETGRTH 232 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH +YAGH +A DD+YGD+EFDRQ+ GL RLFLHA FT+P T ++ ++ A Sbjct: 233 QIRVHAKYAGHALACDDKYGDKEFDRQVK--FKGLKRLFLHAHQFIFTNPLTNDIQKVNA 290 Query: 303 PMDEGLKRCLQKL 315 + L+ L KL Sbjct: 291 SLPVELEEFLAKL 303 >UniRef50_Q6MEC0 Pseudouridine synthase n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MEC0_PARUW Length = 318 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 91/317 (28%), Positives = 144/317 (45%), Gaps = 25/317 (7%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKG-VPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDE 65 V ++ I+ DE G+R+D L + ++ ++ K + VN +K L+ GDE Sbjct: 8 EVDLLIISEDEVGERLDKVLARRFNAKYSRTYFQFLIDKHLILVNGIAVKKRTLLQEGDE 67 Query: 66 VRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIE 125 V + + E + ILYED+H+LV+NKP+G VH G G Sbjct: 68 VEVQFLASPESN--------LMPENIPLSILYEDEHLLVINKPAGMVVHPAPGNWSGTFV 119 Query: 126 GLRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLA 178 P+ +VHRLD+ TSG+L+ AK + L E + + K YLA Sbjct: 120 NALLYYCQKLPLLPDTIRPGIVHRLDKGTSGLLVAAKTLETQQKLIELFASRKVYKAYLA 179 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVT 238 + G+ +QAP+ ++ + + + V GKP+ + K + V+ T Sbjct: 180 ICIGRPAD--GEIQAPIGRHPIHRKQ--MAVIPTGKPAISFCKTLGWSDKLSFVQIEIAT 235 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM 298 GRTHQIRVH +Y G PI D YG ++ + + LHAA L+F HP + E + Sbjct: 236 GRTHQIRVHMKYRGSPILGDPLYGQISLNQYYS-----VPHQLLHAAVLRFQHPISLENL 290 Query: 299 RIEAPMDEGLKRCLQKL 315 P + R ++K+ Sbjct: 291 EFCTPPPPEMVRLIKKI 307 >UniRef50_A5IBH6 Pseudouridine synthase n=6 Tax=Legionella RepID=A5IBH6_LEGPC Length = 321 Score = 321 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 90/316 (28%), Positives = 151/316 (47%), Gaps = 16/316 (5%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 + +++ + QR+D+ L L +S+I ++ G V +N KP+ K GD + I Sbjct: 7 QQLSVPRELHNQRVDSVLARLLPEYSRSLICNWIKTGAVTLNNLPCKPKDKALGGDLITI 66 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGL-SFGVIEGL 127 + +L K + I+YED ++V+NKP+G VH G+G ++ L Sbjct: 67 NVNHTIVNTD----FNLCKPENIPIQIIYEDSEVIVVNKPAGLVVHPGAGNKEHTLVNAL 122 Query: 128 RALRPEARFL---ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQW 184 PE + L ++HRLD+DT+G+L+VAK + SL Q++ + +++ YL LV G Sbjct: 123 LHHCPELQLLPRAGIIHRLDKDTTGLLIVAKNLISHTSLIRQMQNREIKRHYLTLVHGYV 182 Query: 185 QSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQI 244 S ++ ++ + V+ G+ + T + + + Y TL+ S +TGRTHQI Sbjct: 183 ISG-GTIDTGFGRHP--KNRLKMAVTDFGRQAVTHYNINKHYKDFTLLNVSLMTGRTHQI 239 Query: 245 RVHTQYAGHPIAFDDRYGDR-----EFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RVH Y HP+ D YG R D + R LHA ++ F HP + Sbjct: 240 RVHMNYINHPVVGDQLYGGRMKFPPNADEAILSVLKQFKRQALHACSISFCHPVKNTEIT 299 Query: 300 IEAPMDEGLKRCLQKL 315 + A + + + L L Sbjct: 300 LNALLPDDFELLLNTL 315 >UniRef50_B9YI75 Pseudouridine synthase, RluA family n=1 Tax='Nostoc azollae' 0708 RepID=B9YI75_ANAAZ Length = 329 Score = 321 bits (823), Expect = 3e-86, Method: Composition-based stats. Identities = 90/319 (28%), Positives = 156/319 (48%), Gaps = 23/319 (7%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYK-LEAGDEV 66 + ++ + + QR+D +L ++L+ + +S + +++ +G V +N + + ++ GD + Sbjct: 21 MTVINLLVSQNTQRLDLYLSSELQNLSRSRLQQLIEQGHVLLNDQVCTSKKVNVKVGDRI 80 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-E 125 + E ++ P + ILYED+ +L+LNKP+G VH G G + Sbjct: 81 CV--------EIPSLQPLKLVAEDIPLDILYEDEQLLILNKPAGLVVHPAPGHLDGTLVN 132 Query: 126 GLRALR------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 L A + +VHRLD+DT+G + +AK A + L QL+ K +++YL + Sbjct: 133 ALLAHCANLPGIGGVQRPGIVHRLDKDTTGAIAIAKTDIAYQHLQAQLQAKTARREYLGV 192 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGER-IVRVSQEGKPSETRFKVEERYAFATLVRCSPVT 238 V G ++ + P+ ++ + IV Q G+ + T +++ ER + TL+ T Sbjct: 193 VYGVPKTESGIINLPISRHPQDRKKMAIVPTEQGGRTAITHWQIRERLSNYTLIHFQLET 252 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM 298 GRTHQIRVH+ GHPI D YG G L LHA LK HP +G+ + Sbjct: 253 GRTHQIRVHSAKIGHPIVGDSVYGAG------RSVGVNLAGHALHAWQLKLQHPISGDWI 306 Query: 299 RIEAPMDEGLKRCLQKLRN 317 ++ A + L+ LR Sbjct: 307 QVTASPPQTFTTLLEVLRR 325 >UniRef50_B6J6C4 Pseudouridine synthase n=7 Tax=Coxiella burnetii RepID=B6J6C4_COXB1 Length = 327 Score = 320 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 93/317 (29%), Positives = 159/317 (50%), Gaps = 23/317 (7%) Query: 12 AITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNK-KRIKPEYKLEAGDEVRIPP 70 I + AG R+D L +S + +R G V+V+ ++ K K+ + I Sbjct: 15 IIPPELAGARLDQVLAKLFPDYSRSQLQNWIRGGHVKVDGIQKTKAREKVRENQFIEI-- 72 Query: 71 VRVAEREEEAVSPHLQKVA-ALADVILYEDDHILVLNKPSGTAVHGGSGLSF-GVIEGLR 128 E + P+ + V + ++YED+ +LV+NKP G VH G+G+ +I L Sbjct: 73 -------EAQLEPNERWVPQPIPLDVIYEDETLLVINKPVGLIVHPGAGVRDQTLINALL 125 Query: 129 ALRPEARFL---ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 P + ++HRLD+DTSG+LL+A+ ++ +L + ++ + + ++Y A+V+G Sbjct: 126 HYDPSLSVVPRAGIIHRLDKDTSGLLLIARTLASHHALIKAMKARQIVREYEAIVKGVLI 185 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245 S ++++AP+ ++ + + V + G+P+ T F++ +RY T +R TGRTHQIR Sbjct: 186 SG-RTIEAPVGRHPIHRTR--MAVVEFGRPAITHFRIIKRYRAHTHIRVQLETGRTHQIR 242 Query: 246 VHTQYAGHPIAFDDRYGDR-----EFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 VH + HP+A D YG L A L R LH A L+F+HP M Sbjct: 243 VHMAHIHHPLAGDPVYGSHVGIPVHLSDPLQTALKTLKRQALHGATLQFSHPVDQRPMAC 302 Query: 301 EAPMDEGLKRCLQKLRN 317 AP+ + L+ L + Sbjct: 303 HAPLPADMAHLLECLED 319 >UniRef50_Q7UHX8 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UHX8_RHOBA Length = 334 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 105/331 (31%), Positives = 153/331 (46%), Gaps = 35/331 (10%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 ++ + G RID FL G +S I ++ V+ + I+P YK++AG +VR Sbjct: 2 MREFVVPESANGFRIDLFLTQSCDGYSRSQIRDAVQNDGAEVDGRIIRPSYKVKAGQKVR 61 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 RV + P + ILYEDD ++V+NKP+G VH G G + Sbjct: 62 F---RVPPPASDDTVPE-----NIPLDILYEDDGLVVINKPAGMVVHPARGNWTGTLTSA 113 Query: 128 RALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 A R +VHRLDRDTSGV++VAK + +L Q ++ +QK+Y A+ Sbjct: 114 LAFRFQSLSDVGGPTRPGIVHRLDRDTSGVIVVAKNNAVHLNLAAQWHDRLVQKEYTAIT 173 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRV-SQEGKPSETRFKVEERYAFATLVRCSPVTG 239 G+ + A + ++ Q ++ +R K + T ++V ER+ T V P TG Sbjct: 174 FGRLDRDRDWIHASIGRHPYQRDKQAIREGHATSKTASTFYEVVERHGRVTRVDVRPKTG 233 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDR-EFDRQLTEAGTG------------------LNRL 280 RTHQIRVH + G PI D YG E R G L+R Sbjct: 234 RTHQIRVHLAHIGCPILCDRLYGGHSELSRSQIRRLAGTEVATPGVKPTPEGEEILLSRQ 293 Query: 281 FLHAAALKFTHPGTGEVMRIEAPMDEGLKRC 311 LHA AL FT+P TG+ M + AP+ L+ Sbjct: 294 ALHAKALTFTNPQTGKEMTLTAPLPPDLQAV 324 >UniRef50_A8ZXZ8 Pseudouridine synthase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZXZ8_DESOH Length = 329 Score = 320 bits (821), Expect = 4e-86, Method: Composition-based stats. Identities = 100/320 (31%), Positives = 152/320 (47%), Gaps = 24/320 (7%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + +A G R+D + Q + +++ G + V+ + KP YK+ + Sbjct: 9 LVTSAGHDGLRLDTLVAGQW-DCSRHSAALLIKNGTILVDGRPQKPSYKVGVNQSIT--- 64 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRA 129 R+ ++ E P + +L+ED +LV+NKP G VH G G + L Sbjct: 65 GRIPSQKPEKPGPEPAPLP-----LLFEDAFLLVVNKPPGLVVHPAPGHEGGTLVNRLLH 119 Query: 130 LRP------EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 P E +VHRLDR+TSG L+VAK +A ++L + + + ++K YLALV GQ Sbjct: 120 HFPAIGTVGEPDRPGIVHRLDRNTSGALVVAKTAAAHQALSDMFKSRQVRKTYLALVYGQ 179 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 +S V P+ ++ L+ + V S + +P+ETR+KV + + A+L+ TGRTHQ Sbjct: 180 MKSTGGVVTLPIGRHSLERKKMSVS-SPQARPAETRWKVRKAFVDASLLELEIHTGRTHQ 238 Query: 244 IRVHTQYAGHPIAFDDRYGDR-------EFDRQLTEAGTGLNRLFLHAAALKFTHPGTGE 296 IRVH P+ D Y + R E R LHA L+F HP TG Sbjct: 239 IRVHCTALQRPVVGDPTYPCKWTRKRQHFSSRASFELLNAAGRQMLHAWRLEFDHPVTGA 298 Query: 297 VMRIEAPMDEGLKRCLQKLR 316 M AP+ E +K L LR Sbjct: 299 PMCFTAPLFEDIKEMLHLLR 318 >UniRef50_C0QAZ3 RluD1 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAZ3_DESAH Length = 313 Score = 319 bits (819), Expect = 7e-86, Method: Composition-based stats. Identities = 94/317 (29%), Positives = 157/317 (49%), Gaps = 22/317 (6%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + I+ G+R+D + + + + R + KG + V+ R KP Y+++ G+ V Sbjct: 5 IEISEALMGRRLDLVVADVVHDTTRGAVVRAIEKGLILVSGNRKKPAYRVKPGEVVCGSL 64 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRA 129 +E E + + +++ L+ED I+V+NKP+G VH G+G S G + L Sbjct: 65 GSESEIESKP------RAESISLDFLHEDQWIVVVNKPAGMVVHPGAGNSSGTLLNALLH 118 Query: 130 LRPEARFLE--------LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 P +VHRLD+DTSG ++VAK + A L ++ R + ++K Y+AL Sbjct: 119 HFPSLTDTHCDPPLRGGIVHRLDKDTSGTIVVAKSKKAYEFLQKEFRFRRVEKRYIALAT 178 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 G + P+ ++ + +R+ ++ +P+ET ++V + A TL+ TGRT Sbjct: 179 GIITETQGRITLPIGRHPIHR-KRMAVNTERARPAETLWRVLGQMAGHTLLDVGLKTGRT 237 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVH + GHP+A D YG R + R LHA L F HP +G+ + Sbjct: 238 HQIRVHFRALGHPLAGDRVYGFR------GKQSARAPRQMLHAGTLGFRHPWSGKRVEFT 291 Query: 302 APMDEGLKRCLQKLRNA 318 AP+ E + L++L Sbjct: 292 APLPEDMVEVLERLNRG 308 >UniRef50_B2A2J2 Pseudouridine synthase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2J2_NATTJ Length = 328 Score = 319 bits (819), Expect = 8e-86, Method: Composition-based stats. Identities = 85/314 (27%), Positives = 151/314 (48%), Gaps = 21/314 (6%) Query: 15 ADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVA 74 + G R+D +L Q++ + +S ++ V VN +K Y + +GD V++ + Sbjct: 20 EKDEGLRLDLYLSEQIEDLSRSKAKMLINNNSVMVNDNWVKASYSITSGDVVKVDTQLI- 78 Query: 75 EREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA 134 + E + P ++ I+YED+++LV+NKP VH G+G + + Sbjct: 79 -QSEITLIPQ-----SIPLDIVYEDEYLLVVNKPRNMVVHPGAGNYRDTMVNALLYHCQN 132 Query: 135 -------RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 +VHRLD+DTSG+L+VAK+ L E+++ + + + YLALV G + Sbjct: 133 LSDGTSYERPGIVHRLDKDTSGLLVVAKQNETHDILSEEIKNRRVARTYLALVIGDFSKK 192 Query: 188 VKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF---ATLVRCSPVTGRTHQI 244 ++ P+ ++ + + V GK + T+ ++ + + ++CS TGRTHQI Sbjct: 193 KATIDLPIGRDP--RNRKKMAVVHGGKRAITKVEMLRSFQNPEKISYLKCSLETGRTHQI 250 Query: 245 RVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPM 304 RVH + G+P+ D Y R + + L LH+ +L FTHP + M AP+ Sbjct: 251 RVHLSHLGYPLLGDPVY--RGKTGKNVDIDKNLTGQALHSFSLAFTHPVFKKTMVFRAPL 308 Query: 305 DEGLKRCLQKLRNA 318 + + KL + Sbjct: 309 PSDMMNLISKLTRS 322 >UniRef50_C9LM35 Pseudouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM35_9FIRM Length = 308 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 92/315 (29%), Positives = 148/315 (46%), Gaps = 26/315 (8%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEV-RVNKKRIKPEYKLEAGDEVRIPPV 71 ++ + G+R+D FL+ + G+ +S + + ++ G V + KK I Y + GD + Sbjct: 8 VSVADEGKRLDQFLKER-TGLTRSEVQKWIKAGNVSLLPKKMIHSNYHVSEGDRISFFWE 66 Query: 72 RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR 131 ++E + ILYED+ ++V+NK G VH G+G + G + Sbjct: 67 EKKKQELIG--------QNIPLDILYEDNDMIVINKRRGVVVHPGAGNTEGTLVNALLFH 118 Query: 132 --------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 + +VHRLD+DTSGV++ AK A L +++ Q+ Y+ALV GQ Sbjct: 119 CGEQLRSVGDPERPGIVHRLDKDTSGVMVAAKSERAYGILQKEIASHKAQRCYIALVHGQ 178 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 + ++ PL ++ + V + + G+P+ T F V E + + C TGRTHQ Sbjct: 179 MEGDTGVIRLPLGRSTKDRMKWDV-LHETGRPAVTHFHVIEYLPHYSWIECKLETGRTHQ 237 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH + H + D YG + + LH+ L+ HP TGEVM EAP Sbjct: 238 IRVHMAHIRHAVVNDPLYG-------WKKDHFPIKGQALHSHTLELCHPITGEVMHFEAP 290 Query: 304 MDEGLKRCLQKLRNA 318 + E + CL R Sbjct: 291 VPEDMINCLNLARKE 305 >UniRef50_C5VRN0 Pseudouridine synthase n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VRN0_CLOBO Length = 302 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 92/318 (28%), Positives = 158/318 (49%), Gaps = 23/318 (7%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 ++ + + + R++++L ++ I + R+G ++VN + Y L Sbjct: 1 MESKDNIIKLKVEIETEEIRLNHYL-KEVAQCSSRFIRKAAREGRIKVNGNNARLSYMLT 59 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 D V + ++ +EE+ + P + I+YED+ I+V+NKP G VH Sbjct: 60 NNDIVEL---QINRKEEQDIIPE-----KMDLDIIYEDNDIIVVNKPKGIVVHPTKRHLN 111 Query: 122 GVIEG----LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 G + + E + LV+RLD DTSG++L+AK + +L +++ K YL Sbjct: 112 GTLSNGVLYYFNDKNENSIVRLVNRLDMDTSGLVLIAKNAYSHMALSRDMQKDDFVKKYL 171 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPV 237 A+V G + + P+ + + +RI + + G+ S T FKV E+Y A+LV + Sbjct: 172 AIVHGNFNEDSGVIDKPIYRVGEGTLKRI--IDERGQRSITLFKVIEQYKNASLVELTLE 229 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQIRVH GHPI D YG+ E ++R LHA L+ HP G++ Sbjct: 230 TGRTHQIRVHLSSIGHPIYGDSLYGE--------EEPQYIDRQALHAYKLQIPHPKDGKI 281 Query: 298 MRIEAPMDEGLKRCLQKL 315 +++E+ + E +K ++KL Sbjct: 282 LKLESSLPEDMKNLIRKL 299 >UniRef50_Q312A0 Pseudouridine synthase, RluD n=6 Tax=Bacteria RepID=Q312A0_DESDG Length = 578 Score = 317 bits (814), Expect = 3e-85, Method: Composition-based stats. Identities = 94/321 (29%), Positives = 146/321 (45%), Gaps = 29/321 (9%) Query: 13 ITADEAGQRIDNFLRTQLKG--VPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRIP 69 ++ AG+R D F+ L G + + I R + G++ ++ P+ KL++G + Sbjct: 45 VSPQAAGERADRFIAAALAGDAISRGKIQRAISDGQLLIDNTVCTSPKTKLKSGQHI--- 101 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLR 128 V E VSP ++ +LY D H+LV+NKP+G VH G + L Sbjct: 102 -VFSMEAPAACVSPEEGELE-----VLYRDAHMLVINKPAGLTVHPAPSCPEGTLVHRLL 155 Query: 129 ALRPE-----ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 PE +VHR+D+DTSG+LL+A A +L + + + K+YLALV+G Sbjct: 156 HHFPELEAQEGFRPGIVHRIDKDTSGLLLIALTEKARLALSDAFAGRRIHKEYLALVKGI 215 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA------FATLVRCSPV 237 + + AP+ ++ + V + G+ + + ++V TLV Sbjct: 216 PEGDSGEIDAPVGRHPTHKTR--MAVVRGGREALSTWRVLLADPHGGGGTGWTLVAVRIH 273 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYG---DREFDRQLTEAGTGLNRLFLHAAALKFTHPGT 294 TGRTHQIRVH Q+ GHP+ D YG RE + R LHA + F HP T Sbjct: 274 TGRTHQIRVHMQHTGHPLWGDALYGGMPGREELQTTPALAQTATRQMLHAWKISFDHPVT 333 Query: 295 GEVMRIEAPMDEGLKRCLQKL 315 G M+ P ++ L Sbjct: 334 GAPMQFTLPPPADFGTLIRDL 354 >UniRef50_A9NGF1 Pseudouridine synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NGF1_ACHLI Length = 297 Score = 316 bits (812), Expect = 5e-85, Method: Composition-based stats. Identities = 99/308 (32%), Positives = 152/308 (49%), Gaps = 26/308 (8%) Query: 16 DEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAE 75 ++ R+D+FL + +S I +++ G V VN K YKL+ DE+ + E Sbjct: 7 EQTDSRLDHFLVAS-TELNRSQITTLIKDGLVMVNGLTTKAGYKLKNSDEITLN----LE 61 Query: 76 REEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI--------EGL 127 +EE + K + I+YEDD I+V+NKP G VH S + + L Sbjct: 62 AKEET---NPLKPKNIDLNIVYEDDDIMVINKPKGLVVHPSETFSETTLVSGLLHHTDTL 118 Query: 128 RALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 + ++HR+D+DTSG++LVAK A + L + L+ ++++Y+ALV G + Sbjct: 119 STHNDDPLRPGILHRIDKDTSGLILVAKTNEAHKILAQDLKSHDIKREYIALVEGVLDHN 178 Query: 188 VKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVH 247 + AP+ ++ + V GKP+ T F+V + TL+ C TGRTHQIRVH Sbjct: 179 KGVIDAPIARHP--KIRTKMAVVATGKPAITHFEVMRTFRDHTLLHCKLETGRTHQIRVH 236 Query: 248 TQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEG 307 Y HP+ D YG T+A + LHA L+F HP T +VM +EAP+ Sbjct: 237 LAYIKHPVTGDPLYG--------TKAKILKDGQLLHAFRLEFVHPITKKVMMLEAPLPPE 288 Query: 308 LKRCLQKL 315 + L L Sbjct: 289 FESYLVTL 296 >UniRef50_B9ZR86 Pseudouridine synthase, RluA family n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZR86_9GAMM Length = 328 Score = 316 bits (811), Expect = 6e-85, Method: Composition-based stats. Identities = 139/318 (43%), Positives = 188/318 (59%), Gaps = 12/318 (3%) Query: 4 ETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAG 63 + +++T GQR+DNFL +LKGVPKS+IYR++RKG +RV+ +R K +L G Sbjct: 10 SPSGPRTLSVTERGDGQRLDNFLLRELKGVPKSLIYRLVRKGAIRVDGRRAKVTQRLSVG 69 Query: 64 DEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV 123 EVR+P + E E + P + + L IL+EDD +LVL+KPSG AVHGGSGL+FG+ Sbjct: 70 SEVRVPDLDRPEAVERDIPPGV--LDRLRRSILHEDDQVLVLDKPSGLAVHGGSGLAFGI 127 Query: 124 IEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 IE +R LRP + LEL HRLDR+TSG LL+AK RS L+ H LRE ++K YLAL G Sbjct: 128 IEAMRQLRPGSE-LELGHRLDRETSGCLLLAKSRSGLQDFHAALREGRVEKRYLALQVGA 186 Query: 184 WQSHVKSV-QAPLLKNILQSGERIVRVSQEGKP-----SETRFKVEERYAFATLVRCSPV 237 + S V P+ + G+R +R ++ P + ++F ERY L Sbjct: 187 FPSDQPIVCDEPIASSRGPDGKRRMRAGEDADPESARSAISQFVPLERYGSFQLAEVRIG 246 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQIRVH Q GHP+ D YG + +R L G GL RLFLHA AL++ + E Sbjct: 247 TGRTHQIRVHGQAIGHPVGGDHDYGLPDANRVLR--GAGLKRLFLHAQALQYEDSAS-ES 303 Query: 298 MRIEAPMDEGLKRCLQKL 315 AP+ + L+ L L Sbjct: 304 HVYSAPLPDELQSILDAL 321 >UniRef50_C0ZH07 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZH07_BREBN Length = 306 Score = 316 bits (811), Expect = 7e-85, Method: Composition-based stats. Identities = 88/309 (28%), Positives = 139/309 (44%), Gaps = 24/309 (7%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + +AGQ + L+ + GV + ++ R KG + N + KL+AGD++ Sbjct: 8 FTVDEADAGQTVREVLQKRY-GVSRRLLIRAKFKGSITRNGVLVFVNEKLQAGDKIA--- 63 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG---- 126 E + + I YED+ ++V+ KP+G VH G + Sbjct: 64 -----VMVEEEAEETVAPEDMPLSIRYEDEDLMVIAKPAGLVVHPTGNHPSGTLANGMIA 118 Query: 127 LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 R E R V+RLD+DTSG+++VAK + A + + +Q+ Y A+V+G +S Sbjct: 119 YWKKRGENRKFRAVNRLDKDTSGLMIVAKNQWAHEQFSRMQQIRTLQRTYRAIVQGIVES 178 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 ++ P+ R VR +G+ + T ++V R + V TGRTHQIRV Sbjct: 179 DDGTINTPIGLAENSFITRQVR--PDGQTAVTHYRVLARGEGMSFVEVKLETGRTHQIRV 236 Query: 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDE 306 H GHP+A DD YG + R LHA L F HP +G M E P+ Sbjct: 237 HMSSEGHPLAGDDLYGGEREH---------IGRQALHAWGLSFVHPRSGLAMSWEEPLPN 287 Query: 307 GLKRCLQKL 315 +++ Q+ Sbjct: 288 DMEQLAQQF 296 >UniRef50_D1VS73 Pseudouridine synthase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VS73_9FIRM Length = 295 Score = 315 bits (809), Expect = 9e-85, Method: Composition-based stats. Identities = 84/313 (26%), Positives = 151/313 (48%), Gaps = 28/313 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + + GQR+D +L L + +S I ++ +V VNKK +K YKL D + + Sbjct: 4 FKVDKENFGQRLDVYLAK-LVDLSRSQIKNLIDNEKVLVNKKNVKAGYKLSEDDVISL-- 60 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 E + + ++YED++I V++KP VH G+G S G + Sbjct: 61 --------EYPKDNKPFAEKIDFNVIYEDEYIAVISKPQDLVVHIGAGNSSGTLVNGLLY 112 Query: 131 RPEAR-------FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 + + + +VHRLD++TSG++++AK A +L +Q + ++K YLA+V G+ Sbjct: 113 KFKNQLSDLDPLRPGIVHRLDKNTSGLMIIAKNNQAHINLVDQFKNSQIKKYYLAIVHGK 172 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 + P+ +N +++ V + K + T++K + + +L+ + +TGRTHQ Sbjct: 173 -TPESGIIAEPIGRNPNDR-KKMAVVYKNSKQAITKYKKLKEFQEYSLLNINLLTGRTHQ 230 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH Y G+P+ D YG + +++ LH+ L F HP T + M Sbjct: 231 IRVHMAYIGYPVLGDIIYG--------RKNSLKIDKQMLHSYKLIFNHPITNQKMEFTDE 282 Query: 304 MDEGLKRCLQKLR 316 K+ + K++ Sbjct: 283 FPIRFKKFIDKIK 295 >UniRef50_C9RQF0 Pseudouridine synthase, RluA family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQF0_FIBSS Length = 424 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 92/325 (28%), Positives = 156/325 (48%), Gaps = 26/325 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + G+RID FL ++ V ++ + +++ GEV+V ++ +++E G V + Sbjct: 3 YIVEEKHNGERIDKFLVGVMENVSRTDVQKLIEAGEVKVGGGKVSKNFRVETGMAVVVE- 61 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 ++ E+E + P + I+YEDD I+V+NKP VH G+G+S G + Sbjct: 62 -KMIEKESSTLEPE-----DIPLNIVYEDDDIVVINKPRNLVVHPGNGVSKGTLAAALLY 115 Query: 131 RPEAR--------FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 + +VHRLD+DT G+++VAK +A R L QL + + + Y ALV G Sbjct: 116 HFKENLSTVNGPLRPGIVHRLDKDTPGLMVVAKNDAAHRHLAHQLETRTLHRTYNALVWG 175 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 + ++ AP+ +N + V + GK S T + ++ +A ATL+ +GRTH Sbjct: 176 CPRDLEGTIDAPIGRNP--KNRLKMAVVKGGKESRTHYVAKQFFAIATLLELQLESGRTH 233 Query: 243 QIRVHTQYAGHPIAFDDRYGDRE---------FDRQLTEAGTGLNRLFLHAAALKFTHPG 293 QIRVH++Y GHP+ D Y R+ + L A ++ HP Sbjct: 234 QIRVHSRYTGHPVVGDPLYDGRDESLNRVPPLMKPVAEKVLEIAPAQLLQAVKIELIHPR 293 Query: 294 TGEVMRIEAPMDEGLKRCLQKLRNA 318 T + + + PM+E L+ L+ Sbjct: 294 TNKKLTFKVPMEEPFANVLKLLKKE 318 >UniRef50_A7H6D3 Pseudouridine synthase n=6 Tax=Cystobacterineae RepID=A7H6D3_ANADF Length = 339 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 109/316 (34%), Positives = 162/316 (51%), Gaps = 12/316 (3%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 + I+ D AGQR+D +R L+ VP S +Y++ R ++RVN R K E + AGD V Sbjct: 1 MLTFTISEDAAGQRLDKLVRKALRDVPLSHVYKMFRTRKIRVNGGRGKAEQLVAAGDVVV 60 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 I + P + A+ +L+ED +L ++KP+G A H G+G+S + + Sbjct: 61 IRGDEERLLARQEPEPGAR-AGAVTFGVLHEDADVLAVDKPAGLAAHPGTGISGATLVEM 119 Query: 128 RALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREK-GMQKDYLA 178 P HRLDRDTSGV+LVAK R + L E + ++K YLA Sbjct: 120 ARAHLGTPADLPPTEFKPSPAHRLDRDTSGVVLVAKNRKTMVRLTELFTDGADVKKTYLA 179 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVT 238 LV+G+ ++ PL ++ + + R + + TR+KV A+L+ + T Sbjct: 180 LVKGKMPREAGTIDLPLAEHEQTARSKAAR-GVNLQEALTRWKVVSAMKEASLLAVTIET 238 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM 298 GRTHQIR H + GHP+ D RYGD +R + GL R+FLHA L+ HP TG + Sbjct: 239 GRTHQIRRHLEAVGHPVLGDRRYGDFPTNRAARQRW-GLRRMFLHAWRLELPHPTTGAPL 297 Query: 299 RIEAPMDEGLKRCLQK 314 R+EAP+ L L + Sbjct: 298 RLEAPLPGELLEALSR 313 >UniRef50_C6J6E3 Pseudouridine synthase n=2 Tax=Bacillales RepID=C6J6E3_9BACL Length = 321 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 94/330 (28%), Positives = 151/330 (45%), Gaps = 23/330 (6%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRI-LRKGEVRVNKKRIKPEYK 59 M +E + A E G + + L+ ++ G+ + ++ RI L + V +N +R+ Sbjct: 1 MSSEYYDPIEYQVPAAEDGWTVKSVLQRRM-GISRKLLSRIKLTERGVMLNGERVYISVP 59 Query: 60 LEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGL 119 ++AGD V + + + + P + I+YED+ +L++NK +G VH G Sbjct: 60 VKAGDTVSVS---LEKETSTDILPE-----PIPFDIVYEDEALLIVNKAAGLIVHPTHGH 111 Query: 120 SFGVIEG----LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKD 175 G + + E VHRLD++TSG++ +AK + + EQL + K Sbjct: 112 YTGTLANGVVYYWQEKGEKFRFRPVHRLDQETSGLIAIAKNAYVHQHISEQLIAGEVTKK 171 Query: 176 YLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCS 235 Y ALV G ++ P+ ++ + RI V+ G PS T +KV E Y V Sbjct: 172 YTALVHGCPAVPEGTIDGPIDRDPAEPHRRI--VTPSGYPSLTYYKVAEAYGDGARVELR 229 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRYG-------DREFDRQLTEAGTGLNRLFLHAAALK 288 TGRTHQIRVH GHP+ D YG ++ + R LHA+ L Sbjct: 230 LGTGRTHQIRVHMTSIGHPLIGDKFYGMPGLAELPAPARERIARLDAAIGRQALHASELG 289 Query: 289 FTHPGTGEVMRIEAPMDEGLKRCLQKLRNA 318 F HP TGE + ++ + E + + LR A Sbjct: 290 FRHPLTGEALTFKSELPEDMLKLEAMLRRA 319 >UniRef50_C7MES4 Pseudouridine synthase, RluA family n=5 Tax=Actinomycetales RepID=C7MES4_BRAFD Length = 318 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 127/311 (40%), Positives = 189/311 (60%), Gaps = 11/311 (3%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 + + + + AG+R+D FLR+++KGVP +++R+LR+G++RVN ++ + Y+L+AGDE+ Sbjct: 14 PARTLIVDVEHAGRRLDKFLRSRVKGVPAGLLFRLLRQGKLRVNGRKAQQNYRLQAGDEI 73 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 +P +R+ + + L L+ED+ +L+++KP+G AVH G+ + GVI+ Sbjct: 74 TVPALRIDADAAPPPAVPPALIQQLRGTALHEDEDLLIIDKPAGVAVHRGTDVPAGVIDA 133 Query: 127 LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREK--GMQKDYLALVRGQW 184 LR LRPE LEL+HRLDR TSGVL +AK S LR LH+ LR++ +++ YLALV G W Sbjct: 134 LRQLRPELPDLELIHRLDRSTSGVLALAKSPSMLRYLHDLLRDREDEIERRYLALVAGHW 193 Query: 185 QSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF-ATLVRCSPVTGRTHQ 243 + + APL + E V V +G+ +ET V +R+ ATL+ +TGR HQ Sbjct: 194 PAETTILDAPLRRE-----ENRVVVDPDGQRAETHVAVAQRFGNRATLLEVRLLTGRKHQ 248 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH Q+AGHPIA DDRYGD F+R A G L LHAA L P G + + AP Sbjct: 249 IRVHLQHAGHPIAGDDRYGDDAFNR--RAASLGGTGLHLHAAELVIPRP-DGTTLAVTAP 305 Query: 304 MDEGLKRCLQK 314 ++ L+ Sbjct: 306 TPRRWEQLLRA 316 >UniRef50_Q28US1 Pseudouridine synthase n=43 Tax=Rhodobacterales RepID=Q28US1_JANSC Length = 354 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 107/336 (31%), Positives = 162/336 (48%), Gaps = 26/336 (7%) Query: 6 PSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDE 65 V+ + I D+ QR+D + R VP+ I ++ RKGE+RV+ R+K +LE G Sbjct: 2 SGVQTLEIGPDDGDQRLDRWFRRIFPHVPQGRIEKMCRKGEIRVDGGRVKSNTRLEVGQM 61 Query: 66 VRIPPVRVAEREEEAVSPHLQKVAALAD--------VILYEDDHILVLNKPSGTAVHGGS 117 VR+PP+ A + + + + ++D ++Y DDHI+ +NKP+G GG+ Sbjct: 62 VRVPPLPDAADPKADPANWVNNASRISDADEKMIRAAVIYRDDHIIAINKPAGLPTQGGT 121 Query: 118 GLSFGVIEGLRALRPE-ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDY 176 G S V AL+ LVHRLD+DTSGVLL+A+ R ++L + R + +K Y Sbjct: 122 GQSRHVDGLAEALKFGLEDKPRLVHRLDKDTSGVLLMARTRMGAKALTDAFRLRSTRKIY 181 Query: 177 LALVRGQWQSHVKSVQAPLLKNILQ------SGERIVRVSQ-----EGKPSETRFKVEER 225 A V G + +++ L+K R V V + K +ET + V Sbjct: 182 WAAVAGSPLPRMGTIKLGLVKAPGHGRGGENEKMRAVPVDEIAQVDGAKRAETDYAVMSN 241 Query: 226 YAF-ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREF----DRQLTEAGTGLNR- 279 P+TGRTHQ+R H GHPI D +YG D + G ++R Sbjct: 242 LGGRVCWCALVPITGRTHQLRAHMAEIGHPIIGDGKYGGSGQENLGDGWGAQLGGEISRK 301 Query: 280 LFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 L LHA +L F HP TG + + AP+ E + + L Sbjct: 302 LHLHARSLSFRHPMTGAQVNLVAPLPEHMAKTWDTL 337 >UniRef50_D0RPR1 Pseudouridine synthase n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RPR1_9RICK Length = 325 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 89/329 (27%), Positives = 158/329 (48%), Gaps = 30/329 (9%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRIP 69 + + +RID + Q + +S + +I++ +++N + +K P +K+++GD++ Sbjct: 6 FVVDENFDQKRIDQVVAKQYPKISRSKVSKIIKTELLKLNGQILKDPSHKVKSGDQIEFE 65 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI----- 124 + EE ++ +K + I++ED I++++KP G VH G+G + Sbjct: 66 NLI-----EETINLIPKK---MDLNIIFEDQDIIIIDKPIGMVVHPGAGNYEDTMVNGLL 117 Query: 125 ----EGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 L + E R +VHR+D+DTSG+L+VAK A + +Q E +++ YL V Sbjct: 118 YHCKNNLSGMNGEDR-PGIVHRIDKDTSGLLVVAKNDQAHAFIAKQFEEHSIKRSYLVFV 176 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA-----FATLVRCS 235 G + ++ + +N + V + GK + T ++ E + +LV+C Sbjct: 177 YGILRPLHGKIETLIGRNKTNRQKMSADVIR-GKDAITNYETLEVFKGNKIPDISLVKCI 235 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRYGD-----REFDRQLTEAGTGLNRLFLHAAALKFT 290 TGRTHQIRVH + G+PI D YG R D++ E L R LHA L F Sbjct: 236 LETGRTHQIRVHMSHKGNPILGDQTYGKKIKKIRGIDQEFEEILKSLKRQALHAHTLGFI 295 Query: 291 HPGTGEVMRIEAPMDEGLKRCLQKLRNAR 319 HP T E + + + + L + +L + Sbjct: 296 HPTTNEEVFFASELPDDLNKLKNRLETLK 324 >UniRef50_Q0BWH2 Pseudouridine synthase n=3 Tax=Alphaproteobacteria RepID=Q0BWH2_HYPNA Length = 341 Score = 313 bits (803), Expect = 5e-84, Method: Composition-based stats. Identities = 96/346 (27%), Positives = 154/346 (44%), Gaps = 45/346 (13%) Query: 8 VKIVAITAD--EAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKR-IKPEYKLEAGD 64 + + IT++ +AGQR+D FL + +G+ +S ++ +G V V P ++ G Sbjct: 1 MNQIVITSEAADAGQRLDAFLGARAEGISRSRAKTLIEEGAVTVGGAVETNPRAPVKKG- 59 Query: 65 EVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI 124 V P + + A+ IL+ED H+++LNK +G AVH G G + Sbjct: 60 -------LVYAVNMPPPVPAMPEAEAIPLEILFEDAHLVILNKAAGMAVHPAPGSQTGTL 112 Query: 125 EGLRALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDY 176 +VHRLD+ TSGV++ AK SA L + + Y Sbjct: 113 VNALLHHCQGQLSGIGGVERPGIVHRLDKLTSGVMVAAKTESAHTGLAALFERHDIDRVY 172 Query: 177 LALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQE---GKPSETRFKVEERYAF----- 228 A+ RG + +++A + ++ + V + + + + T +K E + + Sbjct: 173 RAVTRGAPRPLSGTIEAAIARSESDRKKMSVHRNPDSPAARHAVTHYKAVETFGYKDRAT 232 Query: 229 ----ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDR-------------EFDRQLT 271 A L+ C TGRTHQIRVH ++G P+ D YG + +D+ L Sbjct: 233 RLPAAALLECRLETGRTHQIRVHMAHSGAPLIGDPVYGRQAGIMAWKAPGSEARYDKALA 292 Query: 272 EAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 A +R LHAA L F HP TGE +R EAP+ E + + LR Sbjct: 293 -AARAFSRQALHAAVLGFVHPITGETLRYEAPLPEDMTGLIAALRK 337 >UniRef50_D1BAB3 Pseudouridine synthase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1BAB3_THEAS Length = 320 Score = 313 bits (802), Expect = 6e-84, Method: Composition-based stats. Identities = 94/312 (30%), Positives = 150/312 (48%), Gaps = 30/312 (9%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVN-KKRIKPEYKLEAGDEVR-- 67 + D G R+D L ++ GV +S +++++G V+V+ R+KP K+ G V Sbjct: 22 FPVGEDGEGHRLDFVLSREI-GVSRSYASKLIKEGMVQVSWSPRVKPSLKVRVGGTVTAQ 80 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EG 126 +PP E E + V ++Y+D ++V++KP+G VH G G + G Sbjct: 81 LPPSEELELEPQDV----------PFRVVYQDQDLVVVDKPAGLVVHPAPGHWRGTLVHG 130 Query: 127 LRALRPE------ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 L P+ + +VHRLD TSG+++VA+ A+ L +++ + K YLA+ Sbjct: 131 LLYRYPDLMELNGVKRPGIVHRLDATTSGLMVVARNGLAMEGLVRAFKDRRVGKVYLAMA 190 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 G + SV P+ ++ + + G+ + TR++V +LV C TGR Sbjct: 191 AGTLR-GEGSVSLPIGRDP--DNRKRMACVPWGREALTRYRVIWSRGGYSLVACQIKTGR 247 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH + GHP+ D YG G L R+FLH+ L+F HP TG M Sbjct: 248 THQIRVHMRSLGHPLVGDRIYGGP------CPEGFPLGRVFLHSWRLEFDHPRTGAPMSF 301 Query: 301 EAPMDEGLKRCL 312 P+ L R + Sbjct: 302 ICPLPPDLVRFI 313 >UniRef50_C6CWL6 Pseudouridine synthase n=2 Tax=Paenibacillus RepID=C6CWL6_PAESJ Length = 316 Score = 313 bits (802), Expect = 7e-84, Method: Composition-based stats. Identities = 107/315 (33%), Positives = 150/315 (47%), Gaps = 20/315 (6%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRI-LRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 V + AD AG+ + L +L GV +S++ R+ L + + VN R K+ GD V I Sbjct: 15 VEVGADMAGKDVRTVLERKL-GVSRSLLSRLKLTEYGITVNGVRAYTTAKVTEGDSVAI- 72 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG--- 126 R+ E E + P L I++EDD++LV+NKP+G VH G + Sbjct: 73 --RMEEEISEDILPQ-----DLPLSIVFEDDYLLVVNKPAGIIVHPTKGHYTNTLANGIV 125 Query: 127 -LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 +R E VHRLD DTSG++++AK + L EQL+ + K Y A V G Sbjct: 126 HHWQVRGERVRFRPVHRLDEDTSGLVVIAKNPYIHQQLSEQLQAGTIMKIYCAYVYGTPS 185 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF--ATLVRCSPVTGRTHQ 243 +V AP+ +N RI V+ EG PS T +K + A+ VR TGRTHQ Sbjct: 186 PADGTVGAPIDRNPEDPHVRI--VTPEGYPSVTHYKTAAVFGGGQASKVRLKLETGRTHQ 243 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH ++ G P+ D YG + ++ E T R LHA L THP T E A Sbjct: 244 IRVHMKHIGCPLIGDGMYGLQT--GKVDEWETAAGRQALHAETLGLTHPMTKEWSEWTAA 301 Query: 304 MDEGLKRCLQKLRNA 318 + L + LR Sbjct: 302 LPPDLVQLELALREC 316 >UniRef50_B5YKV0 Pseudouridine synthase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKV0_THEYD Length = 315 Score = 312 bits (801), Expect = 8e-84, Method: Composition-based stats. Identities = 81/315 (25%), Positives = 155/315 (49%), Gaps = 15/315 (4%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 ++ + G+R+D F+ +L + ++ + K V+VN YK++ D + + Sbjct: 4 LLQTEKADEGKRLDIFISDKL-NISRAKAQEAIEKKFVKVNNYVKTKSYKIKFNDLIEVS 62 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 + E + ++Y+DD+++VL+KP+G V+ +G G + A Sbjct: 63 DEFSLKLENS----EKLIPQNIPIQVIYKDDYLIVLSKPAGMVVYPCAGHPDGTLMNALA 118 Query: 130 LR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 +VHRLD+DTSGV++VA L E +++ ++K+YLALV G Sbjct: 119 YHVKKLANVGAPFRPGIVHRLDKDTSGVMVVALDDETYYKLVEAFKKREIKKEYLALVYG 178 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 Q + + P+ + I + ++ S++ K + T ++V + + T ++ +TGRTH Sbjct: 179 QLR-GSGKITTPVGRAIYDRKKMSIK-SKKAKEAITEWEVIKNFKNYTFLKVKILTGRTH 236 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH GHP+ D YG + + ++ ++R LHA ++ HP T ++++ EA Sbjct: 237 QIRVHFSSIGHPVIGDKTYGRKTY-IEIGNKKIPVSRQMLHAHKIELIHPITEKLLQFEA 295 Query: 303 PMDEGLKRCLQKLRN 317 + + ++ L L + Sbjct: 296 SLPDDIQYILNILED 310 >UniRef50_A8GQ59 Pseudouridine synthase n=15 Tax=Rickettsia RepID=A8GQ59_RICAH Length = 329 Score = 312 bits (801), Expect = 8e-84, Method: Composition-based stats. Identities = 78/322 (24%), Positives = 143/322 (44%), Gaps = 24/322 (7%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEV 66 + + + R+D L L+ + ++ I + ++ +V VN I P+ ++ D + Sbjct: 1 MLTYNVPNELNNIRLDKALSQLLEKISRNQIQKAIKNSQVLVNDVIISDPDVLVKENDVI 60 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 E + AV+ +A I+YEDD ++V+NK +G VH G+G + Sbjct: 61 LFAFKEPEELKIAAVN--------IALDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVN 112 Query: 127 LRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 A +VHRLD+DT+G+++VAK A L Q+ ++ + + Y AL Sbjct: 113 ALLYHTKNLSDIGSAARPGIVHRLDKDTTGLMVVAKNNKAHMLLANQIEQRQVIRKYKAL 172 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY--AFATLVRCSPV 237 V G ++ + ++ ++ +++ + GK + T +K E + ++V C Sbjct: 173 VWGVINPLAGVIKNNIGRSRVER-QKMSILKYGGKEAVTHYKTLELFYGGTISMVECRLN 231 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFD-----RQLTEAGTGLNRLFLHAAALKFTHP 292 TGRTHQIRV + H + D YG+ + L R LH+ L FTHP Sbjct: 232 TGRTHQIRVQLSHVKHSVVGDQTYGNNDRKIAHSSPALKAKLIDFKRQALHSWYLSFTHP 291 Query: 293 GTGEVMRIEAPMDEGLKRCLQK 314 + ++M + ++ + Sbjct: 292 TSNKIMEFSCELPRDMEAIIAT 313 >UniRef50_C1A885 Pseudouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A885_GEMAT Length = 329 Score = 312 bits (801), Expect = 9e-84, Method: Composition-based stats. Identities = 102/322 (31%), Positives = 149/322 (46%), Gaps = 22/322 (6%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 M E+ SV + AG R+D + V ++ ++ G V VN R K YK Sbjct: 1 MTGESASVSEFTVGYT-AGGRLDLLVADH-ASVSRTQAATLIANGNVLVNGAREKASYKG 58 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 E GD VR+ R+ A + ++YED+H+LV++K +G VH G Sbjct: 59 ETGDVVRVTIPPPPGRDIVA--------EQIPLDVVYEDEHLLVVDKAAGMVVHPAPGNW 110 Query: 121 FGVIEGLRALRPEA-------RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQ 173 G + R E LVHRLD+DTSG+L+VAK +A R+L L + + Sbjct: 111 TGTLVNALLGRGEPLAEGGGEDRAGLVHRLDKDTSGLLVVAKSDAAHRTLSSALAARQVT 170 Query: 174 KDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVR 233 + Y A+ G +V+ P+ ++ + + Q GK S T F R+ L+R Sbjct: 171 RRYAAVCWGHLAEERITVEKPIARDPRDRTR--MAIVQSGKASRTDFTRLARFDSVDLLR 228 Query: 234 CSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPG 293 TGRTHQIRVH GHP+ DD Y A R FLHAA L+F HP Sbjct: 229 AHLHTGRTHQIRVHLASTGHPVVGDDTY---GGGGGRRLALLPPRRHFLHAAWLRFRHPI 285 Query: 294 TGEVMRIEAPMDEGLKRCLQKL 315 +G+++ + +P+ L+ L L Sbjct: 286 SGDLIDLRSPLPADLRTSLAAL 307 >UniRef50_A1AW00 Pseudouridine synthase n=2 Tax=sulfur-oxidizing symbionts RepID=A1AW00_RUTMC Length = 314 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 92/318 (28%), Positives = 154/318 (48%), Gaps = 20/318 (6%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 S+ V I GQRID + L + I ++ G+ ++ K KP+ K+ G+ + Sbjct: 2 SLLSVIIPNRFIGQRIDAAMAQMLPNYSRVKITYWIKSGDALIHHKTFKPKEKVLGGEVI 61 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 + + E + L + ++YED+ I+++NKP H G G + Sbjct: 62 TLSI------KIEKTNAWL--AQDIVIDVVYEDEAIIIVNKPVNLVTHPGVSNWTGTLAN 113 Query: 127 LRALRPEA----RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 + +VHRLD++TSG+++VA+ A + L QL+ + ++Y A+V G Sbjct: 114 ALLHYDSSLANLDRAGIVHRLDKNTSGLMVVARSEYAQKYLTRQLQTHSISREYSAIVYG 173 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 S +V P+ ++ + V++ GK + T ++V ER+A T V+ TGRTH Sbjct: 174 HMISG-GTVDKPIGRDPKDRIRQ--TVTESGKDALTHYRVIERFAHHTHVKVMLETGRTH 230 Query: 243 QIRVHTQYAGHPIAFDDRYGD-----REFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 QIRVH + GHP+ D YG ++ D+QL + NR LHA L HP + E+ Sbjct: 231 QIRVHLSFIGHPLIADPMYGGKIRFPKKADKQLKNSLKNFNRQTLHAKKLTLIHPTSTEL 290 Query: 298 MRIEAPMDEGLKRCLQKL 315 M + P+ + ++ LQ L Sbjct: 291 MSWKVPLPQDMQDLLQVL 308 >UniRef50_A0Q1S9 Pseudouridine synthase n=32 Tax=Clostridium RepID=A0Q1S9_CLONN Length = 301 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 91/320 (28%), Positives = 156/320 (48%), Gaps = 23/320 (7%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 E ++ + + DE R++++L+ I + R+G ++VN + ++ Y L+ Sbjct: 1 MEEKNNILKIKVQIDEEEIRLNHYLKNH-ANCSSRFIRKAAREGRIKVNNENVRLSYMLK 59 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 D + + ++ E + + P + ++YED I+V+NKP G VH Sbjct: 60 NDDVIEL---QINREENQDIVPE-----KMHLDVIYEDKDIVVINKPKGIVVHPTKRHQN 111 Query: 122 GVIEG----LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 G + + E + LV+RLD DTSG++L+AK + +L +++ K YL Sbjct: 112 GTLSNGVLYYFKEKNENSIVRLVNRLDMDTSGLVLIAKNAYSHMALSRDMQKDDFVKSYL 171 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPV 237 A+V G + + P+ + + R+ + + G+ S TRFKV E Y A LV + Sbjct: 172 AIVHGNLKEKSGVINKPIYRVGEGTLRRV--IDERGQRSVTRFKVVESYEDADLVELTLE 229 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQIRVH GHPI D YG E + ++R LHA L+ HP G + Sbjct: 230 TGRTHQIRVHLSSIGHPIYGDSLYGKEEHEY--------IDRQALHAYKLQIPHPKDGRI 281 Query: 298 MRIEAPMDEGLKRCLQKLRN 317 +++E+ + + +K + KL+ Sbjct: 282 LKLESDLPDDMKNLISKLKK 301 >UniRef50_Q2SS88 Pseudouridine synthase n=4 Tax=Mollicutes RepID=Q2SS88_MYCCT Length = 322 Score = 311 bits (797), Expect = 3e-83, Method: Composition-based stats. Identities = 86/316 (27%), Positives = 158/316 (50%), Gaps = 26/316 (8%) Query: 21 RIDNFLRTQLK--GVPKSMIYRILRKGEVRVNKKRIKPE-YKLEAGDEVRIP------PV 71 R+D L L +S I +++++ + VN + I + ++ ++ I Sbjct: 14 RLDKLLVELLTSYDYSRSYIQKLIKEECISVNNQIITSNNFLVKPNSQIIITIKDPVLDP 73 Query: 72 RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG----- 126 + + ++ + P++ K + I+Y+DD +LV+NK + VH + I Sbjct: 74 NITKNKDPVLDPNITKNKDIDLNIIYQDDDLLVINKQNNITVHPSLNNTNNTIVNALLAS 133 Query: 127 ---LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 L ++ E R +VHR+D+ T+G+L+VAK + L E + + K+YLA+V G Sbjct: 134 DVELSSINGELR-PGIVHRIDKQTTGLLIVAKNDKTHKLLSEMFKNHQIYKEYLAIVTGV 192 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 + + + AP+ ++ +++ ++ K + T F+V ER+ TL++C TGRTHQ Sbjct: 193 IKPNKGLIDAPIGRSQTDR-KKMSVTAKNSKHAITTFEVVERFLKNTLIKCQIQTGRTHQ 251 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH Y HP+ D YG + ++ T+ G +LHA LKFTHP T + + + +P Sbjct: 252 IRVHFNYINHPVLNDPIYGKKH--QEFTDFG-----QYLHAYKLKFTHPITKKEIELISP 304 Query: 304 MDEGLKRCLQKLRNAR 319 + + +++LR Sbjct: 305 LPKEFDDKIKELRGEN 320 >UniRef50_B3QB01 Pseudouridine synthase n=3 Tax=Rhodopseudomonas palustris RepID=B3QB01_RHOPT Length = 455 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 118/326 (36%), Positives = 169/326 (51%), Gaps = 18/326 (5%) Query: 2 KTETP---SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEY 58 K E P V+ V +TADE G R+D FL + G+ S I RI+RKGE+RVN KR + Sbjct: 120 KPEAPLPTKVETVTVTADENGMRVDRFLEARFPGLSFSHIQRIVRKGELRVNGKRADSKD 179 Query: 59 KLEAGDEVRIPPVRVAEREEEA--VSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGG 116 +LE G VRIPP+++ + + + L + L+ED +LVLNKP+G AV GG Sbjct: 180 RLEEGQSVRIPPLKLDTPKLPGHLSEAEQKTLQTLKAMTLFEDADVLVLNKPAGLAVQGG 239 Query: 117 SGLSFGVIEGLRALRP-EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKD 175 SG + + + L LR + + LVHR+D++T+G LLVAK R A +L R + +K Sbjct: 240 SGTTRHIDQMLEVLRDAKGQKPRLVHRIDKETAGCLLVAKTRFAATALTGSFRHRSARKI 299 Query: 176 YLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGK----PSETRFKVEERYA-FAT 230 Y ALV G + + L K + I+RV++ G + T + V E Sbjct: 300 YWALVAGVPKPKQGRISTYLAKEESEDDS-IMRVAKHGDDGASHAVTYYAVVETSGQKLA 358 Query: 231 LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGL-NRLFLHAAALKF 289 V PVTGRTHQ+R H + GH I D +Y F+ + + GL NRL L A + Sbjct: 359 WVSLKPVTGRTHQLRAHMAHIGHAIVGDPKY----FNIENWQLPGGLQNRLHLLARRIVI 414 Query: 290 THPGTGEVMRIEAPMDEGLKRCLQKL 315 HP G V+ + AP+ + + L Sbjct: 415 PHPRGG-VIDVSAPLPPHMLQSWNLL 439 >UniRef50_D1Y3Y9 Pseudouridine synthase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3Y9_9BACT Length = 345 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 96/323 (29%), Positives = 161/323 (49%), Gaps = 28/323 (8%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEV---RVNKKRIKPE 57 M+ + +A+ +++G R+D FL +L + +S ++ G V +V K+I+P Sbjct: 32 MEKMNGEIYELAVPEEDSGARLDLFLAGEL-SLSRSRARSLIDGGAVSSGQV--KKIRPA 88 Query: 58 YKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGS 117 +K++ G R+ A + ++YEDD ++V+NKP+G VH G+ Sbjct: 89 FKIQPGQIYRVEIPEAAPA--------EIAAQDMPFDVVYEDDDVIVVNKPAGVVVHPGA 140 Query: 118 GLSFGVI-EGLRALRPE------ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREK 170 G G + GL PE + +VHRLD TSG+++VA+ +A R L E + Sbjct: 141 GRPDGTLVNGLMFRYPEIGRIGDSVRPGIVHRLDVGTSGLMVVARSDAAFRGLTEAFQAH 200 Query: 171 GMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFAT 230 + K+YL L G ++ +V AP+ ++ + VS +G+ + T +KV A Sbjct: 201 EVLKEYLGLGVGALKAPEGTVDAPIGRDP--RNRLKMCVSWDGRDAVTDYKVLWTRARCN 258 Query: 231 LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFT 290 L+R TGRTHQIRVH + G + D YG ++ + + + +R+FLH+ L F Sbjct: 259 LIRVRLHTGRTHQIRVHMRALGCSLDGDTLYGPKDPAQHILK-----DRVFLHSWRLGFR 313 Query: 291 HPGTGEVMRIEAPMDEGLKRCLQ 313 HP +GE + AP+ L L+ Sbjct: 314 HPVSGERLEFRAPLPPELIAALR 336 >UniRef50_P59838 Ribosomal large subunit pseudouridine synthase D n=3 Tax=Gammaproteobacteria RepID=RLUD_BLOFL Length = 321 Score = 310 bits (795), Expect = 5e-83, Method: Composition-based stats. Identities = 91/325 (28%), Positives = 154/325 (47%), Gaps = 21/325 (6%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEV 66 +K + + ++G R+D L L +S I + +V VN + P K+ G+ + Sbjct: 4 IKPMIVQVHQSGYRLDYILSKLLPQYSRSQIKHWILNKKVVVNNQVSTLPRKKVVYGELI 63 Query: 67 RIPPVRVAER-EEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV-I 124 I + + + E + P + I+YED+ ILV+NK S VH G G G + Sbjct: 64 EIKYINNNDICKSEDIVPQ-----NIPLNIIYEDNDILVINKASNMVVHPGIGHYQGTVL 118 Query: 125 EGLRALRPE----ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 L P ++ +V RLD+DT+G++++AK SA +L + + + K+Y A+V Sbjct: 119 NALLYRYPSILKISKQAGIVQRLDKDTTGLMIIAKTVSAYDNLLRSFKLRKVVKEYDAIV 178 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 G++ S+ V P+ ++ + + V GK + T + V E + + VR + TGR Sbjct: 179 YGKFTSNAGVVNQPMRRHFAKRT--FMSVHYTGKSAVTYYSVVEEFKAHSRVRINLKTGR 236 Query: 241 THQIRVHTQYAGHPIAFDDRYGD-------REFDRQLTEAGTGLNRLFLHAAALKFTHPG 293 THQIRVH Y HP+ D +Y ++ +L NR LHA L+ HP Sbjct: 237 THQIRVHMAYINHPLVGDQKYKGNFSVFDIKKMSDELNNYLLDFNRQALHACTLQLLHPI 296 Query: 294 TGEVMRIEAPMDEGLKRCLQKLRNA 318 T M+ AP+ + + + + L+ Sbjct: 297 TQVQMKWNAPLPQDILQLIAILKKY 321 >UniRef50_C1SM47 Pseudouridine synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SM47_9BACT Length = 302 Score = 310 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 88/313 (28%), Positives = 150/313 (47%), Gaps = 22/313 (7%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 K + + + R+D ++ + +S R++ V+VN +YK+++GD + I Sbjct: 6 KTIKLNVETGNMRLDAYIADN-TDISRSFAERLVTDEFVKVNGVSKPKKYKVKSGDSIVI 64 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGL 127 R E V ++ I+Y+ D V+NKP+G VH G + I + Sbjct: 65 DVPREEVPELTPVKMDIE--------IIYDCDEFAVINKPAGITVHPAPGHADDTIVNAM 116 Query: 128 RALRP----EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 A +VHRLD+DTSG+++VAK R + L + ++ + K YLA+ G+ Sbjct: 117 LAEFDITDDNDLRPGIVHRLDKDTSGLMIVAKNRKSREVLSKVFADRDIDKRYLAVCWGK 176 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 + +++ P+ ++ VR ++G+ S++ +V ++ A L TGRTHQ Sbjct: 177 PKELEFTIEQPIGRHYKDRKRMCVR--EDGRYSKSGVRVLKQNNNAFLAEIRIFTGRTHQ 234 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH +AG P+A D YG R+ + + R LH+ L F P TGE M E+P Sbjct: 235 IRVHMSHAGFPLAGDVVYGHRQSLK------LPIKRQALHSFRLAFVSPFTGEDMVFESP 288 Query: 304 MDEGLKRCLQKLR 316 + +K + L+ Sbjct: 289 LPLDMKELIIGLK 301 >UniRef50_Q4FN11 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q4FN11_PELUB Length = 326 Score = 309 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 90/328 (27%), Positives = 156/328 (47%), Gaps = 30/328 (9%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRIP 69 + + DE R+D F+ + + ++ I ++ K ++++N + I P K+ +GDE+ + Sbjct: 7 LIVGEDENNLRLDVFINKRENLISRTRIKNLILKEKLKINDQIINSPSKKVLSGDEINL- 65 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 ++ E +E ++ P+ I+YEDD +L++NKP+G +H G+G I Sbjct: 66 --QIPEPKEASLKPY-----NFKLQIVYEDDDLLIINKPAGIIMHPGAGNYDETIVNALM 118 Query: 130 LR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 + +VHR+D+DTSG++++AK +L Q E + + Y L+ Sbjct: 119 HYNKDSLSTIGDELRPGIVHRIDKDTSGLIVIAKNNETHENLSHQFSEHTITRVYQLLIW 178 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQ-EGKPSETRFKVEERYAF-----ATLVRCS 235 G+ + + + ++ +++ VS +GK + T +K E + +LV C Sbjct: 179 GKLRPSSGKIDTFITRS--SKNRQMMEVSNSKGKRAITNYKTIEIFENDKTPTLSLVECR 236 Query: 236 PVTGRTHQIRVHTQYAGHPIAFD-----DRYGDREFDRQLTEAGTGLNRLFLHAAALKFT 290 TGRTHQIRVH + G+ I D + D L L+R FLHA L F Sbjct: 237 LETGRTHQIRVHMTHMGNSIMGDGKYKKKYKKLKNIDTNLENLIYKLDRQFLHAQTLGFI 296 Query: 291 HPGTGEVMRIEAPMDEGLKRCLQKLRNA 318 HP T E M + + + L+ L LRN Sbjct: 297 HPRTNEEMVFTSILPQELENILVLLRNT 324 >UniRef50_B8GX34 Pseudouridine synthase n=7 Tax=Caulobacteraceae RepID=B8GX34_CAUCN Length = 331 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 106/316 (33%), Positives = 158/316 (50%), Gaps = 10/316 (3%) Query: 4 ETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAG 63 T V+ + + A E G R+D + + + + + ++ R G+VRV+ R K + KL AG Sbjct: 2 STKEVRTLYVDAGEDGVRLDRWFKRRWPHLNHIQLNKLFRSGQVRVDGSRAKADTKLAAG 61 Query: 64 DEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV 123 ++R+PP+ A + + VA ++LYED+ +L LNKP+G AV GG+ + + Sbjct: 62 SQIRVPPLPDAPDPSDKNKLSARDVAYAKSLVLYEDEEVLALNKPAGLAVQGGTKTTKHI 121 Query: 124 IEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 + L A LVHRLDRDTSGVLL+ K SA L ++ QK Y A+V G Sbjct: 122 DKLLSAWGEGVDRPRLVHRLDRDTSGVLLLGKTPSAAARLSGAFAKRKAQKTYWAIVAGN 181 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRV---SQEGKPSETRFKVEERYA-FATLVRCSPVTG 239 ++ L K + E +V + +P+ET F R T + P TG Sbjct: 182 PHPTEGVMELHLAKRGVGDRELVVPAQPKDPDAQPAETEFVTISRAGPRVTWMALRPHTG 241 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RTHQ+R H + GHPI D +YGD + GL L LHA ++ HP G ++ Sbjct: 242 RTHQLRAHMKAMGHPILGDPKYGDEKS----APLSEGLK-LQLHARSILLPHPSAG-MLH 295 Query: 300 IEAPMDEGLKRCLQKL 315 IEAP+ +K +K Sbjct: 296 IEAPLSPEMKEGFRKF 311 >UniRef50_C6BSG2 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BSG2_DESAD Length = 549 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 88/331 (26%), Positives = 146/331 (44%), Gaps = 26/331 (7%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLK--GVPKSMIYRILRKGEVRVNKKRIK-PEY 58 +TE K + + R+D F T L+ G+ + + ++ G +N K K P Sbjct: 11 ETELLWTKTAEFS--DRNTRLDKFWGTALEEEGISRGKVKDWIKAGFAEINGKICKKPNQ 68 Query: 59 KLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG 118 KL +E+ + E E ++ P L I+Y D I V+NKP+G H Sbjct: 69 KLMGNEELTLK----GEAELTSLVPE-----ELPLEIIYNDGKIAVINKPAGLTTHPAPS 119 Query: 119 LSFGVI-EGLRALRPEAR-----FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGM 172 G + + PE R +VHRLD+ TSG++ VA ++ ++ + Sbjct: 120 CPTGTLVHRMIHHFPEIRDMDEWRPGIVHRLDKFTSGLITVALNEHDRLAMSTAFADREV 179 Query: 173 QKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVE--ERYAFAT 230 K YLA+V G + + P+ ++ + + V V + G+ + + ++V + A+ Sbjct: 180 NKAYLAIVHGVPKREFGEIDQPMGRHPVHKTKMAV-VLKGGRDARSEYEVLWSDPAGRAS 238 Query: 231 LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDRE---FDRQLTEAGTGLNRLFLHAAAL 287 LV+ TGRTHQIRVH + GHP+ D YG +++ + R LHA +L Sbjct: 239 LVKVKIYTGRTHQIRVHMAHIGHPLVGDQVYGSMPHAIWEQDQPQLAKLAERQMLHAYSL 298 Query: 288 KFTHPGTGEVMRIEAPMDEGLKRCLQKLRNA 318 FTHP + E + E L+ L + Sbjct: 299 SFTHPDSEEELSFTQAPPEDFINMLKALDKS 329 >UniRef50_A3DDK9 Pseudouridine synthase, RluA family n=3 Tax=Clostridium thermocellum RepID=A3DDK9_CLOTH Length = 318 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 85/324 (26%), Positives = 146/324 (45%), Gaps = 27/324 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + + +G+ + + L+ QLK + + +I ++ R+G++ N + + + D + + Sbjct: 5 YTVDKETSGKTVKHILKKQLK-LSERLIKKLKRQGKILCNNRPVYVNAVVCENDIIEVDL 63 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 + S + + I+YED+ ++ LNK G VH G + A Sbjct: 64 -------DFDDSGIFIQPEDIPIDIIYEDEFLIALNKQPGIVVHPTCSHPGGTLANAVAF 116 Query: 131 RPEARFL----ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 + + + V RLDRDTSG+++ AK L Q+ +K K+Y+ +V ++ Sbjct: 117 HLQKKGIVKKIRPVIRLDRDTSGIIIFAKNPYCQEFLIRQMNDKTFIKEYIGIVHKVLEN 176 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 ++ P+ + + +S +G P+ T + V ER ATLV+ TGRTHQIRV Sbjct: 177 DNGTIDLPIARKPGSI--MLRHISPDGDPAVTHYTVLERLNGATLVKFRLETGRTHQIRV 234 Query: 247 HTQYAGHPIAFDDRY----------GDREFDRQLTEAGTG---LNRLFLHAAALKFTHPG 293 H Q GHP+ D Y G+ Q + R LH+ F HP Sbjct: 235 HCQAIGHPLLGDTLYPFEDTPYSLSGNNPHITQANTPSITSGIITRQALHSQRAVFLHPF 294 Query: 294 TGEVMRIEAPMDEGLKRCLQKLRN 317 T +++ I AP+ E +K L+ LR Sbjct: 295 TKKILEITAPIPEDMKSALEILRK 318 >UniRef50_C0GNZ6 Pseudouridine synthase, RluA family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GNZ6_9DELT Length = 535 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 92/321 (28%), Positives = 147/321 (45%), Gaps = 26/321 (8%) Query: 10 IVAITADEAGQRIDNFLRTQLK--GVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEV 66 + + +AG R+D + + +S + +RKG + ++ KP +KL AG V Sbjct: 6 LFTVQESQAGSRLDRLVMQNIPRPAPSRSRVQDWIRKGNILLDGTVCLKPAHKLSAGQTV 65 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF-GVIE 125 ++ +A E E + P K I+Y D ++VLNKP+G +VH S ++ Sbjct: 66 QV----LAREENEDLEPVAGK-----LDIVYMDREMVVLNKPAGLSVHPSSSDPAPTLVH 116 Query: 126 GLRALRPEAR------FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 L P R +VHRLD+DT+G+++ A + A L Q + + K YLAL Sbjct: 117 YLLYACPGLRLMTDRQRPGIVHRLDKDTTGLMVAALNQEAKEDLAGQFAGRRVHKTYLAL 176 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEER--YAFATLVRCSPV 237 V G + + PL ++ V S+EG+ + T +KV +R +LV+ Sbjct: 177 VCGALKQDEGIINVPLARDQQSRAR--VAPSREGRSARTAYKVLKRDPSGLWSLVQVQIF 234 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDR---QLTEAGTGLNRLFLHAAALKFTHPGT 294 TGRTHQIRVH + HP+ D YG ++DR + R LH++ L HP + Sbjct: 235 TGRTHQIRVHFSHLNHPVLGDRIYGGTDWDRFGWKKRFLSRLAKRQLLHSSCLGIMHPVS 294 Query: 295 GEVMRIEAPMDEGLKRCLQKL 315 + + + R L L Sbjct: 295 RQWLEFISRPPRDFIRTLLWL 315 >UniRef50_C4XSN0 Ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XSN0_DESMR Length = 554 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 98/314 (31%), Positives = 149/314 (47%), Gaps = 24/314 (7%) Query: 16 DEAGQRIDNFLRTQL--KGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPVR 72 D AG R+D F +L + + ++ + + G V+ + KP KL G+ + + Sbjct: 22 DAAGTRLDAFWSARLASEDISRAKVRAAIEAGLALVDGEICRKPGLKLRGGEALTLRLPE 81 Query: 73 VAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRALR 131 +P K +LY D +LVLNKP+G +H S G + L Sbjct: 82 ---------TPSEAKAEDGELKLLYLDGDVLVLNKPAGLTIHPASSQPDGTLVNRLLHHF 132 Query: 132 PEAR-----FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 P+ R +VHRLD+DTSG+LLVA+ SA +L E+ + K YLALV G+ + Sbjct: 133 PDMRAMAGDRPGIVHRLDKDTSGLLLVAQTESARLALAADFAERRVAKTYLALVHGRPER 192 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF--ATLVRCSPVTGRTHQI 244 ++ P+ ++ + V V++ G+ +++ +K+ A+L+ + TGRTHQI Sbjct: 193 SDGVIELPVGRDPKHPTKMAV-VAKGGREAKSSWKLAWTAPDGTASLLEVAIATGRTHQI 251 Query: 245 RVHTQYAGHPIAFDDRYGDR---EFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 RVH GHPI D YG R ++ R+ R LHA L F+HPGTGE + Sbjct: 252 RVHMAAMGHPIVGDAVYGARQHSDWTRRGGAMARLAKRQMLHAWKLAFSHPGTGEELSFC 311 Query: 302 APMDEGLKRCLQKL 315 P R L L Sbjct: 312 QPPPADFWRLLLML 325 >UniRef50_Q13E92 Pseudouridine synthase n=28 Tax=Alphaproteobacteria RepID=Q13E92_RHOPS Length = 426 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 98/330 (29%), Positives = 151/330 (45%), Gaps = 35/330 (10%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRIP 69 V + DE R+D L T+ + +S + ++ G V + ++ P Y +G+ + I Sbjct: 103 VVVAGDEGSPRLDRVLATRCPALSRSRLKALILDGRVAIRGAPVRDPAYHAASGETITID 162 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLR 128 E A+A I++EDD I+V++KP G VH +G G + L Sbjct: 163 VPPPVAPEPAG--------EAIALEIVHEDDDIIVIDKPRGLVVHPAAGHETGTLVNALI 214 Query: 129 ALRPEA-------RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREK----GMQKDYL 177 A E+ R +VHRLD+DT+G+++ AK A +SL Q + +++ Y Sbjct: 215 AHCGESLSGIGGVRRPGIVHRLDKDTTGLMVAAKNDRAHQSLSAQFADHGRTGELRRGYY 274 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF------ATL 231 A V G ++ AP+ ++ + VR G+ + T ++V E + +L Sbjct: 275 AFVWGAPNRIRGTIDAPIDRHPHAREKMAVR--DGGREAITHWEVLETFTGRSGGEIVSL 332 Query: 232 VRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDR------EFDRQLTEAGTGLNRLFLHAA 285 + C TGRTHQIRVH + GHP+ DD YG + A T L R LHA Sbjct: 333 IACQLETGRTHQIRVHLAHIGHPLLGDDVYGPHFKTKASQLRPDARAALTDLGRQALHAY 392 Query: 286 ALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 L HP TGEV+ E+ + LKR L Sbjct: 393 LLVLEHPSTGEVVAWESGLPADLKRLKAAL 422 >UniRef50_Q211J3 Pseudouridine synthase n=81 Tax=Alphaproteobacteria RepID=Q211J3_RHOPB Length = 501 Score = 307 bits (788), Expect = 3e-82, Method: Composition-based stats. Identities = 115/318 (36%), Positives = 169/318 (53%), Gaps = 16/318 (5%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 V+ V ++ADE R+D FL + G+ S I RI+RKGE+RV+ KR + +LE G VR Sbjct: 174 VETVVVSADENNMRVDRFLEARYPGLSFSHIQRIVRKGELRVDGKRADSKDRLEEGQTVR 233 Query: 68 IPPVRVAEREEEA---VSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI 124 IPP+++ + + +AAL +ILYED ++VLNKP+G AV GGSG + V Sbjct: 234 IPPLKLDAPKVGTGNLSEAEQKTMAALRAMILYEDADVMVLNKPAGLAVQGGSGTTRHVD 293 Query: 125 EGLRALRP-EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 L +R + + LVHRLD++T+G LL+AK R A +L RE+ +K Y ALV G Sbjct: 294 LMLEVMRDAKGQKPRLVHRLDKETAGCLLIAKTRFAATALTGAFRERSARKVYWALVAGV 353 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKP----SETRFKVEERYA-FATLVRCSPVT 238 + + L K + + I+R+++ G + T + V E A V PVT Sbjct: 354 PKPKQGRISTYLAKEESED-DTIMRIAEHGDEGASHAVTYYAVVETSASKLAWVSLKPVT 412 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGL-NRLFLHAAALKFTHPGTGEV 297 GRTHQ+R H + GH I D +Y F+ + + GL NRL L A + HP G Sbjct: 413 GRTHQLRAHMAHIGHAIVGDPKY----FNIENWQLPGGLQNRLHLLARRIVIPHPRGG-T 467 Query: 298 MRIEAPMDEGLKRCLQKL 315 + + AP+ + + L Sbjct: 468 IDVSAPLPPHMLQSWNLL 485 >UniRef50_A6DUC9 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DUC9_9BACT Length = 323 Score = 307 bits (788), Expect = 3e-82, Method: Composition-based stats. Identities = 95/330 (28%), Positives = 147/330 (44%), Gaps = 28/330 (8%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGE---VRVNKKRIKP- 56 M+ + QR+D ++ QL ++ + + L+ G VR + +I Sbjct: 1 MEVPEGYTHSWVVDEFNECQRLDRYISQQLPEYSRTFLQKSLKDGAFELVR-SGAKINAR 59 Query: 57 -EYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHG 115 + GD V E +E + P + I+YEDD ILV+NKP+G VH Sbjct: 60 MSENVIEGDFVHYKMPE--EADESTLLPE-----DIELDIIYEDDDILVVNKPAGMVVHP 112 Query: 116 GSGLSFGVIEG---------LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQ 166 G+G G + A+ + +VHRLD++TSGV++VAK L L Sbjct: 113 GAGNYTGTLVNALLGRDLDTFSAMDDGSSRPGIVHRLDKETSGVIIVAKSAKNLDKLSRS 172 Query: 167 LREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERI-VRVSQEGKPSETRFKVEER 225 + ++K Y+AL RG + ++ + + ++ + S GK + + +KV Sbjct: 173 FARRDVEKYYVALCRGTIRVGRDTITSHIGRSRSNRQKMENTNDSNRGKEAISHYKVLAD 232 Query: 226 YAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAA 285 ATLV+ TGRTHQIRVH HP+ D YG R D + + +R LHA Sbjct: 233 NNGATLVKLKIDTGRTHQIRVHMSGINHPVVGDKLYGVRRLDEKESP-----DRHILHAW 287 Query: 286 ALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 + HPGT E+M AP+ + K K Sbjct: 288 RTRIIHPGTQEIMTFTAPLHDDFKSVCDKF 317 >UniRef50_Q2NIN6 Pseudouridine synthase n=4 Tax=Candidatus Phytoplasma RepID=Q2NIN6_AYWBP Length = 306 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 93/317 (29%), Positives = 154/317 (48%), Gaps = 24/317 (7%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 K I+A EA QR+D+FL + + KS +++ +V VN K K Y L+ D + + Sbjct: 5 KEFLISASEAFQRLDHFLSAHI-NLNKSQCQKLILAQQVLVNTKSSKKSYLLKPQDLITV 63 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGG-SGLSFGVIEGL 127 + E S +LQ L I+YED ++ V+NKP+ VH S ++ GL Sbjct: 64 IIPQTHE------SINLQTPQNLNLDIIYEDPYLAVINKPANLVVHPSLSFQKTTLVNGL 117 Query: 128 RALRP-----EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 + + +VHRLD++T+G+L+VAK L +++ + K Y AL+ G Sbjct: 118 LHQFNTLSHIDTQRPGIVHRLDKNTTGLLIVAKTNDVSDKLQIAFQQRKITKIYWALIEG 177 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 + ++ P+ +N ++V +GK + T FK +R++ +L+ C+ TGRTH Sbjct: 178 -FLEDKGIIKLPIGRN--NHNRLKMQVMPDGKTAVTHFKTLQRFSHFSLMECNLETGRTH 234 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 Q+R H + HPI D Y L FLH+ LKF HP T + + +EA Sbjct: 235 QLRAHFSFLKHPIVGDLLYDSSHHITPLG--------QFLHSKILKFNHPITNQNLILEA 286 Query: 303 PMDEGLKRCLQKLRNAR 319 P+ ++ L+ ++ Sbjct: 287 PLPTNFEKLLKTFTDSN 303 >UniRef50_B4U613 Pseudouridine synthase, RluA family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U613_HYDS0 Length = 308 Score = 306 bits (785), Expect = 6e-82, Method: Composition-based stats. Identities = 92/315 (29%), Positives = 145/315 (46%), Gaps = 18/315 (5%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIP 69 + IT D AG+RID + K + + I RI+++ V +N +++ K K+ D + Sbjct: 4 IKITPDIAGERIDVLISNIYKDISREYIKRIIKENGVLINGEKVFKSSKKVFENDVL--- 60 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLR 128 E E K + ILYED+ + V+ KPSG H G G + L Sbjct: 61 -----EFEIPPPKKLDVKAQDIHIDILYEDNDLAVVVKPSGMPSHTGPGHDENTLVNALL 115 Query: 129 ALRPE------ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 A + +VHRLDR T G++++AK + + L + K + K Y A+V G Sbjct: 116 AKFGDLSVIGGVERPGIVHRLDRYTHGLMVIAKNDVSHQKLSLMFKNKEVDKHYKAIVYG 175 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 + ++++ + ++ + V+ EGK + T++ +E+ A+L+ TGRTH Sbjct: 176 ISRFKEQTIETFIRRHPTNRLK--FEVANEGKLAITKYSLEKPLKNASLLDIKIYTGRTH 233 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH Y GHPI D YG + T R L A L F HP + + M E Sbjct: 234 QIRVHMSYIGHPIVGDTLYGYKHSYFDKTLEHMIGKRFLLVAYKLSFLHPKSQKPMEFEI 293 Query: 303 PMDEGLKRCLQKLRN 317 M + K L+ L + Sbjct: 294 DMPDYFKNVLKYLES 308 >UniRef50_B8GZR6 Pseudouridine synthase n=2 Tax=Caulobacter vibrioides RepID=B8GZR6_CAUCN Length = 342 Score = 306 bits (784), Expect = 8e-82, Method: Composition-based stats. Identities = 89/314 (28%), Positives = 136/314 (43%), Gaps = 26/314 (8%) Query: 14 TADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKK-RIKPEYKLEAGDEVRIPPVR 72 + AGQR+D L + ++ + ++ +G + + + K AG Sbjct: 32 PENLAGQRLDKVLAPLFPDLSRARLQALIAEGRLTFDGETVADASRKARAG--------- 82 Query: 73 VAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR- 131 V +P + AL ILYED H++V++K +G AVH G G + Sbjct: 83 VYSLVVPPPAPADPEPEALPLSILYEDAHLIVVDKAAGMAVHPAPGTYNGTLVNALLHHC 142 Query: 132 -------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQW 184 +VHRLD+DTSGV++ AK +A R L + + Y+AL RG Sbjct: 143 GASLSGVGGVARPGIVHRLDKDTSGVMVAAKSDAAHRGLSTLFATHDIDRLYVALTRGAP 202 Query: 185 QSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF-----ATLVRCSPVTG 239 ++Q + ++ +++ + G+ + T ++VE + A V C TG Sbjct: 203 NPPTGTIQTQIGRSPGDR-KKMAVLRAGGREAITHYRVEAAFGPADRPLAARVACRLETG 261 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEA--GTGLNRLFLHAAALKFTHPGTGEV 297 RTHQIRVH G P D YG + + E GL R LHAA L F HP TGE Sbjct: 262 RTHQIRVHMASKGSPCLGDPVYGAAQPAAAVRERIEAAGLRRQALHAAVLGFVHPITGET 321 Query: 298 MRIEAPMDEGLKRC 311 +R E P+ + Sbjct: 322 LRFETPLPADMDAL 335 >UniRef50_A5INM9 Pseudouridine synthase n=7 Tax=Thermotogaceae RepID=A5INM9_THEP1 Length = 304 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 116/310 (37%), Positives = 164/310 (52%), Gaps = 22/310 (7%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRIP 69 V +T + +R+D FLR QLK VP S+IY+++RKG+V VN KR+K P + LE GD V Sbjct: 3 VEVTKENFYRRLDKFLRNQLKDVPLSVIYKLIRKGKVYVNGKRVKDPSFDLEEGDVVEFR 62 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG-LSFGVIEGLR 128 V + + + L V + +LYE H LVLNKP A+H G G +IEGL Sbjct: 63 YVNLENLPKRSEKKDLTPVP-MKLDVLYEGKHYLVLNKPPNIAIHPGKGVHVATLIEGLL 121 Query: 129 ALRPEARF-LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 E F LVHRLD+DTSG+L+VAK R A R L E +++ ++K+Y+ LVRG +++ Sbjct: 122 HYGQEKGFSPFLVHRLDKDTSGLLVVAKDREAARILTELFKDRNIEKEYVTLVRGTPENN 181 Query: 188 VKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVH 247 + + +G+ + + + +L+R TGR HQIR H Sbjct: 182 -----------------MKITIPLDGQEAISEIVSVKSLRDVSLLRVKIHTGRKHQIRRH 224 Query: 248 TQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEG 307 G P+ DD YGDR F+R+ + GL RLFLH+ +KF P T E AP+ + Sbjct: 225 LSQIGFPVVGDDTYGDRHFNREFRKR-YGLKRLFLHSYRMKFIDPWTEEEKDFRAPLPDD 283 Query: 308 LKRCLQKLRN 317 L L L Sbjct: 284 LLSVLNFLEE 293 >UniRef50_A1HR26 Pseudouridine synthase, RluA family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HR26_9FIRM Length = 301 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 92/301 (30%), Positives = 157/301 (52%), Gaps = 29/301 (9%) Query: 22 IDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKP-EYKLEAGDEVRIPPVRVAEREEEA 80 + +FL++ G+ + + +I R+G+V +N +K + + +GDE+ I ++ Sbjct: 15 VRDFLKSA--GISLTQLRKIKRQGQVLINGHPVKSFQTPVSSGDEISIDY-----GDDSC 67 Query: 81 VSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG----LRALRPEARF 136 ++P + I+YEDD +L++NKP+G VH S + + + Sbjct: 68 LTPM-----KMPLHIVYEDDFLLIVNKPAGLLVHPTSDPTEPTLAHGILYYLHSKGALGA 122 Query: 137 LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLL 196 +HRLDR+TSG++ +AK +L KG+++ YLA+V G S + + AP+ Sbjct: 123 FHPIHRLDRNTSGLVAIAKHPHIQHALSGG-GAKGLKRLYLAVVTGIPSSLMGRIDAPIG 181 Query: 197 KNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIA 256 ++ +R+VR +G+P+ T ++V ++ A+LV +TGRTHQIRVH + GHP+ Sbjct: 182 RHPNSIIKRVVR--SDGQPAITLYRVLSTFSMASLVELELLTGRTHQIRVHLSHIGHPLL 239 Query: 257 FDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLR 316 DD YG A + R LHAA+L F HP T +V+ + +P+ L +Q LR Sbjct: 240 GDDLYGG---------ATDLIRRQALHAASLSFRHPATDKVLTLTSPLPPDLADLIQLLR 290 Query: 317 N 317 Sbjct: 291 Q 291 >UniRef50_C9M7B4 Pseudouridine synthase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M7B4_9BACT Length = 301 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 93/316 (29%), Positives = 151/316 (47%), Gaps = 24/316 (7%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNK-KRIKPEYKLEAGDEVR 67 + + + +AG R+D +L QL + +S + R++ G V+ ++K + +GD Sbjct: 4 RRIVVEPSDAGNRLDLYLSGQL-ELSRSAVGRLISGG--LVSGVGKVKASRVVVSGDW-- 58 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EG 126 V + E EE+V P + +Y DD + V+ K +G AVH G+G G + G Sbjct: 59 -FDVSMPEPSEESVVPQ-----DVPFRTVYADDWLAVVEKLAGIAVHPGAGRKDGTLVNG 112 Query: 127 LRALRPEARF----LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 L +VHRLD TSG+++VA+ A L + ++ ++K YLALV G Sbjct: 113 LVKTFGPLPGAGLRPGIVHRLDIGTSGLMVVARTPQAYLFLQREFSQRRVEKTYLALVHG 172 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 + ++ P+ ++ + VR +G+ + TR++ +L C TGRTH Sbjct: 173 WIPASQGTLDGPIGRSRYDRLKMAVRA--DGRRAVTRYRTLWTRGSLSLTACRIETGRTH 230 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH G + D YG ++ R E R+FLHA L F HP G M + Sbjct: 231 QIRVHMASIGCYLDGDRLYGPKDVSRHFLE-----GRVFLHAWRLSFHHPSDGRTMNFRS 285 Query: 303 PMDEGLKRCLQKLRNA 318 P+ + L L+K+R+ Sbjct: 286 PLPDELIGVLKKIRSE 301 >UniRef50_Q0F3G2 Possible pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G2_9PROT Length = 325 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 95/324 (29%), Positives = 150/324 (46%), Gaps = 29/324 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI--KPEYKLEAGDE--V 66 + ++ + +G+R+D L + +S I +LR+G VR + + ++ G+ + Sbjct: 13 ITVSTEASGKRLDAVLAAAC-ELSRSRIQTLLREGHVRTAGGSVISQASARVWEGERYLL 71 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 +PPV+ P + + L IL+ED+H++VLNKP+G VH G G + Sbjct: 72 TLPPVK----------PLILEPEDLPLDILFEDEHLIVLNKPAGIVVHPSHGHDHGTLVH 121 Query: 127 LRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 +VHRLD+DTSG L++AK + L E E + + Y+A Sbjct: 122 ALLHHCKTLPGINGVERPGIVHRLDKDTSGSLVIAKSEVVHQRLSEMFAEHNLNRQYIAW 181 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTG 239 RG VK ++ P+ ++ Q + + V+ G+ S T VE + + +R + TG Sbjct: 182 CRGVPSWRVKCIELPIGRHPHQ--RQKMAVTDSGRESITDAAVEHIFGPFSQMRLTLHTG 239 Query: 240 RTHQIRVHTQYAGHPIAFDDRYG-----DREFDRQLTEAGTGLNRLFLHAAALKFTHPGT 294 RTHQIRVH + P+ D Y RE A L+R LHA L+F HP + Sbjct: 240 RTHQIRVHMAHENLPVLGDPVYARSYHPGREIPEPARHAIATLSRQALHAELLEFDHPIS 299 Query: 295 GEVMRIEAPMDEGLKRCLQKLRNA 318 GE M AP+ E L L + Sbjct: 300 GEPMSFRAPLPEDLTILHDALTKS 323 >UniRef50_C6XNC0 Pseudouridine synthase n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XNC0_HIRBI Length = 369 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 99/357 (27%), Positives = 154/357 (43%), Gaps = 61/357 (17%) Query: 2 KTETPSVKIVAI--TADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEY 58 + + + + I A+ AG+R+D +L + +S I+ KG+V ++ I P++ Sbjct: 12 SPNSDTTQSIVIVAPAEFAGERLDKWLPIAAPELSRSRAKAIIEKGDVLLDDTAITSPKH 71 Query: 59 KLEAGD---EVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHG 115 K+ A D + +PP AE E + +L+ED+H+++LNKP+G VH Sbjct: 72 KVIA-DGRYVILMPPPLDAEPLPEDI----------PLDVLFEDEHLIILNKPAGLVVHP 120 Query: 116 GSGLSFGVIEGLRALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQL 167 G + G + +VHRLD+DTSGV++ AK A L Sbjct: 121 APGSTSGTLVNALLHHCAGQLPGIGGVARPGIVHRLDKDTSGVMVAAKTEFAHTGLSSLF 180 Query: 168 REKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVR------------------V 209 + M++ YLA+ RG + + ++ + ++ + V Sbjct: 181 QAHFMERAYLAVTRGAPRPLLGKIETRIARSTTDRKKMAVVRESRLSASAEWHGESEEDY 240 Query: 210 SQEGKPSETRFKVEERYAF---------ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDR 260 Q+GK + T +KV E++ ATL C TGRTHQIRVH + G P+ D Sbjct: 241 EQKGKHAITNYKVLEQFGRIDATSGLPAATLTECRLETGRTHQIRVHMAHIGAPLLGDQT 300 Query: 261 YGDREFDR---------QLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGL 308 YG + T A R LHAA L F HP TGE +R E E + Sbjct: 301 YGRYRGLKAHGSGPAFETATHACKEFKRQALHAAILGFEHPVTGENLRFEVEPPEDM 357 >UniRef50_B9JWI8 Pseudouridine synthase n=1 Tax=Agrobacterium vitis S4 RepID=B9JWI8_AGRVS Length = 330 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 106/320 (33%), Positives = 169/320 (52%), Gaps = 14/320 (4%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 ++ + + DEAG R+D + + G+ + +++R G+VRV+ R+K + +++ G V Sbjct: 3 GIEHITVGPDEAGMRLDRWFKIHYPGLGFGPLQKLMRSGQVRVDGGRVKTDARVQPGQVV 62 Query: 67 RIPPVRVAEREEEAVSP------HLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 R+PP+ V + ++ H LA ++L+ED+ + VLNKP+G AV GGSGL+ Sbjct: 63 RVPPMDVDAKTPKSGPIASHDLKHAGDGELLARMLLHEDEKVFVLNKPAGLAVQGGSGLN 122 Query: 121 FGVIEGLRALRPE-ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 + + L A + LVHRLDRDTSGVL+VA+ R A + L RE+ +K Y AL Sbjct: 123 RHIDQMLEAWTSKKGEKPRLVHRLDRDTSGVLVVARTRGAAQKLTAAFRERDTKKTYWAL 182 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERI--VRVSQEG-KPSETRFKVEERYAF-ATLVRCS 235 V+G + H + ++K + G+R+ R ++G + + ++V E A + Sbjct: 183 VKGVPRKHDDKISTWVVKEQTEDGDRMRIARHGEDGADHAVSYYRVLETAAQSLAWLEME 242 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTG 295 P TGRTHQ+R+H + GHPI D +Y D G RL LHA + HP G Sbjct: 243 PYTGRTHQLRLHALHIGHPIIGDPKY--YIDDPNWDFPGGVQKRLHLHARHIDIPHPDGG 300 Query: 296 EVMRIEAPMDEGLKRCLQKL 315 +RI AP+ + + L Sbjct: 301 R-LRITAPLPPHMVQTWNLL 319 >UniRef50_B1VEM5 Pseudouridine synthase n=3 Tax=Corynebacterium RepID=B1VEM5_CORU7 Length = 313 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 124/320 (38%), Positives = 190/320 (59%), Gaps = 18/320 (5%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 MK P + + ++ +A +R+D ++R+Q+KGVP ++++R++R ++ VN + KP+ + Sbjct: 1 MKHSEP--QTLIVSDSQADRRLDKYIRSQVKGVPATVLFRMMRTKQITVNGAKCKPDQRT 58 Query: 61 EAGDEVRIPPVRVAEREEEAV---SPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGS 117 AGD+V +P + VAE + + Q L+ I++EDD +L++NKP+ AVH GS Sbjct: 59 VAGDKVHLPALEVAEAKPKPAGDRKAAEQLARRLSRHIVFEDDDLLIVNKPANIAVHVGS 118 Query: 118 GLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG--MQKD 175 G+ GVIE LR LRPE + LEL HRLD++TSG+L+VAK LR L LRE G +Q+ Sbjct: 119 GVKAGVIEALRVLRPEDKELELAHRLDKETSGLLIVAKNSKMLRHLQSLLREGGEDIQRY 178 Query: 176 YLALVRGQWQ---SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFA-TL 231 YLA+ G + + + APL K +G V + G+ +ET+ V++ + A TL Sbjct: 179 YLAVAGGVLKKSGKQARRIDAPLRK----TGAATVVDRRAGQQAETKLWVKKPWGRAGTL 234 Query: 232 VRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTH 291 V +TGR HQIRVH Q+ GHPI D RYGD+ ++ E G+ L LHA+ L Sbjct: 235 VEVQLLTGRKHQIRVHLQHLGHPIIGDSRYGDKAANQAAAEK--GVRMLMLHASRLVIPL 292 Query: 292 PGTGEVMRIEAPMDEGLKRC 311 P +GE + ++APM + Sbjct: 293 P-SGEELDVQAPMPPAWNKL 311 >UniRef50_B2IK20 Pseudouridine synthase n=2 Tax=Beijerinckiaceae RepID=B2IK20_BEII9 Length = 350 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 110/333 (33%), Positives = 166/333 (49%), Gaps = 27/333 (8%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 S K + + DE G R+D + + +L + S + +I+R G+VRV+ R+K +L AG V Sbjct: 2 SAKTLTVDTDEEGMRLDRWFKRRLPDLSLSHLNKIVRTGQVRVDGARVKTATRLAAGQSV 61 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 R+PP+ + ER E + AL ++IL+ED ++VLNKP G AV GGSG++ + + Sbjct: 62 RVPPLDLPERPLEKPAIVSADAQALREMILFEDRDLMVLNKPFGLAVQGGSGMTHHIDKM 121 Query: 127 LRALRPE-ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 L +L E LVHRLDRDTSGVLLVAK R L E R + +K Y A+V G + Sbjct: 122 LASLPNERGDRPVLVHRLDRDTSGVLLVAKTRRMAAELGEIFRSRQARKIYWAVVEGVPK 181 Query: 186 SHVKSVQAPLLKNILQSGER--------------IVRVSQEG----KPSETRFKVEERYA 227 + L K +R +RV++ G + S T + + ++ Sbjct: 182 PAQGRISLYLAKGEGMEDKRGPHGRDAEARAGLEKMRVAKHGEEDARHSVTYYAIVDKVP 241 Query: 228 F-ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYG-----DREFDRQLTEAGTGLNR-L 280 + P+TGRTHQ+R H + GHPI D +YG D + G+ R L Sbjct: 242 SRLAWLSMKPITGRTHQLRAHAEAIGHPIIGDPKYGLKPKDDPRRNDPNRAIPEGVERKL 301 Query: 281 FLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQ 313 L A L HP G ++ + AP+ +++ Sbjct: 302 HLLARRLILPHPRGG-ILDVTAPLPPHMQKTFD 333 >UniRef50_P54604 Uncharacterized RNA pseudouridine synthase yhcT n=5 Tax=Bacillus RepID=YHCT_BACSU Length = 302 Score = 304 bits (780), Expect = 3e-81, Method: Composition-based stats. Identities = 98/307 (31%), Positives = 150/307 (48%), Gaps = 26/307 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + I + GQ + + L+T LK K +I + +++VN + + ++ GD V I Sbjct: 10 ILINEKQDGQWLFSVLKTALKA-SKPVIQDWMSHQQIKVNHESVLNNMIVKKGDRVFID- 67 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 + E E +V P + IL+ED+H+L++NKP+G A H G + L A Sbjct: 68 --LQESEASSVIPEYGE-----LDILFEDNHMLIINKPAGIATHPNEDGQTGTLANLIAY 120 Query: 131 R----PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 E + VHRLD+DTSG ++ AK R A L +QL +K +++ Y A+ G+ ++ Sbjct: 121 HYQINGETCKVRHVHRLDQDTSGAIVFAKHRLAHAILDQQLEKKTLKRTYTAIAEGKLRT 180 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF--ATLVRCSPVTGRTHQI 244 ++ +P+ ++ R RVS G+ + T FKV A +LV TGRTHQI Sbjct: 181 KKGTINSPIGRDRSHPTRR--RVSPGGQTAVTHFKVMASNAKERLSLVELELETGRTHQI 238 Query: 245 RVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPM 304 RVH GHP+ D YG LNR LHA ++ HP T E++ EAP Sbjct: 239 RVHLASLGHPLTGDSLYGG---------GSKLLNRQALHANKVQAVHPITDELIVAEAPF 289 Query: 305 DEGLKRC 311 +K Sbjct: 290 PADMKNL 296 >UniRef50_A4WSV2 Pseudouridine synthase n=41 Tax=Alphaproteobacteria RepID=A4WSV2_RHOS5 Length = 349 Score = 304 bits (779), Expect = 3e-81, Method: Composition-based stats. Identities = 90/346 (26%), Positives = 148/346 (42%), Gaps = 47/346 (13%) Query: 1 MKTETPSVKIVAITA-DEAGQRIDNFLRTQLKG---VPKSMIYRILRKGEVRVNKKRI-K 55 M P ++IT ++ +R+D L + + +S + +++ +G VR+ + Sbjct: 1 MAILPPHGGTLSITIGEDPPERLDKALAREAPEEAALSRSRLMKLIAEGAVRLKGVPVTD 60 Query: 56 PEYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHG 115 P+ ++ G I AE E A+ +++ED ++V++KP G VH Sbjct: 61 PKARVLEGQVYEIVTGAAAEVE--------ALPEAIPLSVVWEDADLIVIDKPVGMVVHP 112 Query: 116 GSGLSFGVIEGLRALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQL 167 G G + + +VHR+D+DTSG+L+VAK A + L Q Sbjct: 113 APGQWTGTLVNALLHHCGASLSGIGGEKRPGIVHRIDKDTSGLLVVAKTDRAHQGLAAQF 172 Query: 168 REKGMQKDYLALVRGQWQSHVK----------------SVQAPLLKNILQSGERIVRVSQ 211 +++ YLALV G + + + ++ + V + Sbjct: 173 EAHTVERRYLALVHGVPEPSDPRLRGIRGVSFEPGGVLRIATGIARHRTDRQRQAVTF-E 231 Query: 212 EGKPSETRFKVEERYAF---ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDRE--- 265 G+ + TR ++ ER+ A LV C TGRTHQIRVH + GH + D YG R Sbjct: 232 GGRHAVTRARLLERFGTPPAAALVECRLETGRTHQIRVHMSHVGHGLIGDQTYGGRRKLS 291 Query: 266 ---FDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGL 308 + +A R LHAA L F HP TGE + E+P+ + Sbjct: 292 AKAVGAEAAQAAEAFPRQALHAATLGFCHPVTGEDLSFESPLPADM 337 >UniRef50_C1ZB48 Pseudouridine synthase, RluA family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZB48_PLALI Length = 325 Score = 303 bits (778), Expect = 4e-81, Method: Composition-based stats. Identities = 96/324 (29%), Positives = 144/324 (44%), Gaps = 24/324 (7%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 K V + AG R+D+FL + I R++ G V ++ + ++ G +V I Sbjct: 6 KTVTVEKYLAGVRVDSFLVKHFRSYTSWRILRMVAAGLVTIDGQVAATTQRVHPGQQVTI 65 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 ++ E + V P IL+EDD +LV+NKP+G H + G + Sbjct: 66 ---QLTEPPDLFVPPE-----PTPLEILFEDDSLLVINKPAGLIAHPTGEIPDGTLINAV 117 Query: 129 ALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 P +VHRLDRDTSG + + K+ + R L Q + + K YLALV Sbjct: 118 QHYLDKQSTHPGLERPGIVHRLDRDTSGAMAICKEHLSHRLLSIQFQLGRISKSYLALVE 177 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQ--EGKPSETRFKVEERYAFATLVRCSPVTG 239 G + P+ + S + + E + S+T +V ER+ TLV P TG Sbjct: 178 GVLTDDQLVIDLPIGRAPGCSSALMSCRADALEAQASKTSLRVVERFPQHTLVEAKPRTG 237 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTG-------LNRLFLHAAALKFTHP 292 R HQIR+H G PI D+ Y R L + +NR LHAA L F HP Sbjct: 238 RMHQIRIHLATIGFPIVGDEFYLKGGEIRPLVWPESERVQVSLLINRQALHAACLSFAHP 297 Query: 293 GTGEVMRIEAPMDEGLKRCLQKLR 316 T E +AP+ + L++ ++ R Sbjct: 298 LTNEWQDFQAPLPDDLRQAIELAR 321 >UniRef50_C0QPR5 Pseudouridine synthase n=4 Tax=Hydrogenothermaceae RepID=C0QPR5_PERMH Length = 319 Score = 303 bits (778), Expect = 4e-81, Method: Composition-based stats. Identities = 86/319 (26%), Positives = 151/319 (47%), Gaps = 27/319 (8%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVR--IP 69 + + +R+D FL + +S ++++ G V + K IK P YK+ G E+ IP Sbjct: 12 VDEEYDRKRLDQFLSSVYPEYSRSYFQKLIKDGYVFEDGKDIKKPSYKVRKGQEITLVIP 71 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 P E + E + IL+ED+ I V+ KP+G VH G + G + Sbjct: 72 PPETLEIKPENI----------PVDILFEDEDIAVVYKPAGMVVHPSPGHTSGTLVNALL 121 Query: 130 L-------RPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 +VHRLD+DT+G++++AK A + L +Q +E+ + K Y+A+V G Sbjct: 122 YHFRNISEYGGKERAGIVHRLDKDTAGLMIIAKSEFAHKELQKQFQERTVDKRYIAVVTG 181 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEER--YAFATLVRCSPVTGR 240 Q+ + P+ ++I +++ + + + T + V+ R T+V TGR Sbjct: 182 IVQNDHGFIDLPIGRSIYNR-KKMGTEATNLRDALTEYWVKNRSEKENLTVVDIKLHTGR 240 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNR---LFLHAAALKFTHPGTGEV 297 THQIRVH GHP+ D YG ++ + + + ++ L A + F HP TGE Sbjct: 241 THQIRVHFSAIGHPLFNDKVYGFKKSQLRSEKMRSISDQTLYHALLAYRIAFDHPRTGEK 300 Query: 298 MRIEA-PMDEGLKRCLQKL 315 + I + E + + ++ + Sbjct: 301 IDITLQKLPEHISKVIEAI 319 >UniRef50_Q2IJ40 Pseudouridine synthase n=7 Tax=Cystobacterineae RepID=Q2IJ40_ANADE Length = 353 Score = 303 bits (776), Expect = 6e-81, Method: Composition-based stats. Identities = 97/334 (29%), Positives = 151/334 (45%), Gaps = 27/334 (8%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 ETP + + + + AG R+D L + ++ + R++ G V+V+ + K +L Sbjct: 17 AGETPDRRTLHVPPELAGARLDAALVRLAPELSRARVQRLVEAGRVQVDGRAAKASARLR 76 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 G+ + + E P L +L+ED ++VL+K G VH G Sbjct: 77 GGEAIAL--------EIPPPEPSGLVAQDLPLAVLHEDADLIVLDKAPGMVVHPARGTPH 128 Query: 122 GVIEGLRALR----------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG 171 + R L LVHRLD+DTSG L+VAK +AL +L Q + + Sbjct: 129 STVVNALLHRLGLPAAAGPDGALPRLGLVHRLDKDTSGCLVVAKTEAALAALQAQWKGRS 188 Query: 172 MQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA-FAT 230 ++K YLAL G + + P ++ R++ + + T ++V E + A+ Sbjct: 189 VEKVYLALCHGALAA-AGRLDTPYGRHPRDRLRFTGRLASS-RRAITEWRVREAFGPAAS 246 Query: 231 LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQL------TEAGTGLNRLFLHA 284 L + TGRTHQIRVH AGHP+ D YG + +L A + R LHA Sbjct: 247 LAEVTLHTGRTHQIRVHLSEAGHPLLGDAVYGGTRREARLAPDDPARRAAEAVGRQALHA 306 Query: 285 AALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNA 318 L HP TG + +EAP+ L+ L+ LR A Sbjct: 307 LRLGLDHPRTGRRLVVEAPVPADLRAALEILRAA 340 >UniRef50_A6NQQ9 Pseudouridine synthase n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQQ9_9BACE Length = 300 Score = 303 bits (776), Expect = 6e-81, Method: Composition-based stats. Identities = 95/315 (30%), Positives = 142/315 (45%), Gaps = 25/315 (7%) Query: 4 ETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIY--RILRKGEVRVNKKRIKPEYKLE 61 ++P + + D++G ++D LR L G+ ++I + L G + ++ R+ ++ Sbjct: 2 DSPRRLTLTVAPDQSGWKVDALLRGTL-GLSGTVIRRVKWLEDG-ILLDGVRVTVGDRVR 59 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 AG + + +P I+Y+D +LVLNK G AVH G G Sbjct: 60 AGQILSVVVGDTEVSGAIVPAPG-------PLDIVYQDQDVLVLNKAPGVAVHPGPGHYS 112 Query: 122 GVIEGLRALRPEARFL----ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 I + + VHRLDR TSG+LLVA A L EQL ++ YL Sbjct: 113 DTIGNFLMDYYRKQGILADFHPVHRLDRGTSGLLLVALHGHAQEVLKEQLHSPSFRRVYL 172 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPV 237 A+ G + AP+ + R VR +G+ + T ++ LVR Sbjct: 173 AVCEGAPNPPSGVIDAPIGRLEGSVLARTVR--PDGQRAVTHYRTLRTVNDRALVRLELE 230 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQIRVH + GHP+ D YG TE + + R LHAA L FTHP TG+ Sbjct: 231 TGRTHQIRVHMAHLGHPLTGDFLYG--------TEDQSLIPRPALHAAELSFTHPITGKT 282 Query: 298 MRIEAPMDEGLKRCL 312 M AP+ + + + Sbjct: 283 MAFTAPLPQDMAALV 297 >UniRef50_Q5PAD0 Pseudouridine synthase n=5 Tax=Anaplasma RepID=Q5PAD0_ANAMM Length = 327 Score = 303 bits (776), Expect = 6e-81, Method: Composition-based stats. Identities = 89/324 (27%), Positives = 154/324 (47%), Gaps = 22/324 (6%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPE-YKLEAGDEV 66 V V +T ++ QRID + L + ++ ++ G+V ++ + I Y + GD Sbjct: 4 VHEVCVTKEDDQQRIDKLISCAL-EISRNRAQGLIAGGQVTISGRVINNNSYLTKTGDVY 62 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 I A ++ +SP+ + ++YED ++V++K AVH G+G+ I Sbjct: 63 TI---VTAVQKPSTLSPNYD----IDLKVVYEDHDVIVIDKDPYIAVHPGNGIEHHTITN 115 Query: 127 LRALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLA 178 R + +VHRLD+DTSG+++ AK +A L E+L +G +K+YLA Sbjct: 116 ALLARFGAGLQSVGSSSRPGIVHRLDKDTSGLMVAAKTENAYYRLSEELANQGFKKEYLA 175 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF-ATLVRCSPV 237 + G + + + + + GKP++T ++VE+ A+L+RC+ Sbjct: 176 VAWGIPCPKRGVIHTNI-RVKRSDITMMEAANSGGKPAKTEYEVEQELGEVASLIRCTLH 234 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYG---DREFDRQLTEAGTGLNRLFLHAAALKFTHPGT 294 TGRTHQIRVH + GH I D +YG + + R LHA+ L F HP T Sbjct: 235 TGRTHQIRVHMSHIGHSIVGDQKYGKNCKKCMRSGVPPDVKNFRRQALHASLLGFRHPST 294 Query: 295 GEVMRIEAPMDEGLKRCLQKLRNA 318 G+ + + + +++ + L A Sbjct: 295 GKYIEFTSKPADDIQQLISALERA 318 >UniRef50_Q8K9E9 Ribosomal large subunit pseudouridine synthase D n=4 Tax=Buchnera aphidicola RepID=RLUD_BUCAP Length = 315 Score = 302 bits (775), Expect = 9e-81, Method: Composition-based stats. Identities = 87/311 (27%), Positives = 148/311 (47%), Gaps = 22/311 (7%) Query: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRIPPVRVAER 76 +G+R+D L +S + + + V +N K P+ K+ G+++ I Sbjct: 16 SGKRLDQILSKLFMQYSRSCLKKWIIMNNVYINGKIENQPDKKILGGEKITIYST----- 70 Query: 77 EEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRP---- 132 +E + +L + AL +YED +IL++NKP G VH G+G G I R Sbjct: 71 -DEKLPINLPQNIALNT--IYEDSNILIINKPPGLVVHPGAGNQDGTILNALLYRYTNIS 127 Query: 133 EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQ 192 ++HRLD+DTSG++++AK + L L+++ + + Y +++G S V Sbjct: 128 SIPRCGIIHRLDKDTSGLMVIAKTIFSYNKLVTLLKKRKIIRKYQGIIKGNMISG-GIVN 186 Query: 193 APLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAG 252 P++++ + + GK S T +K+ R+ F T V TGRTHQIRVH + G Sbjct: 187 YPIMRHPFKRI--CMTTDSLGKKSITHYKIINRFKFHTHVSFRLETGRTHQIRVHMLHIG 244 Query: 253 HPIAFDDRYGDREFDRQLTEAGTGLN------RLFLHAAALKFTHPGTGEVMRIEAPMDE 306 +P+ D YG ++ + + R LHA ++F HP T +VM A + + Sbjct: 245 YPLLGDPLYGGIDYGCNYFQENRNIYRKFNLFRQALHADYIEFIHPFTQKVMSWSASLPQ 304 Query: 307 GLKRCLQKLRN 317 +K L L+ Sbjct: 305 DMKDILLYLKK 315 >UniRef50_D2RBY1 Pseudouridine synthase, RluA family n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RBY1_GARVA Length = 321 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 89/314 (28%), Positives = 150/314 (47%), Gaps = 19/314 (6%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 +T+ +G R D L L GV ++ ++ + + ++ ++ + L+ GD + + Sbjct: 15 FKVTSQFSGCRFDVCLSK-LMGVSRASAISLIERNQAKILGRKSQKSSILQDGDTIVVDQ 73 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 AE++EE + + I+Y DD ++V++KP G A H G S + Sbjct: 74 KESAEQKEEQN----NESSVCNIPIIYNDDDVVVIDKPVGVASHAAKGWSGPTVPECLEA 129 Query: 131 RP--------EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 + +V RLD TSG++LV K A + Q + ++K Y ALV+G Sbjct: 130 VGIDIKTTLCDESRKGIVSRLDVGTSGLMLVCKTDFAYEVMKNQFAKHIVKKTYHALVQG 189 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 ++ AP+ + + ++ +GKP+ T + V ER++ ATLV + TGRTH Sbjct: 190 DLAQDKATIDAPIGRAKVSDFR--FTITSDGKPAVTHWDVLERFSQATLVSVNLETGRTH 247 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH GHP+ D YG + GL R +LH+ L FTHP TG+ + +++ Sbjct: 248 QIRVHFSSIGHPLVGDSMYGANP----VLAQKLGLQRQWLHSMELTFTHPRTGKSVTVKS 303 Query: 303 PMDEGLKRCLQKLR 316 L+ L+ +R Sbjct: 304 HYPLDLQHALEAMR 317 >UniRef50_A3VN52 Ribosomal large subunit pseudouridine synthase C n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VN52_9PROT Length = 324 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 98/325 (30%), Positives = 154/325 (47%), Gaps = 16/325 (4%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 M V+ V +T+ EAGQR+D +++ + GV + + + LRKG+VR+N R+K ++++ Sbjct: 1 MGASVSGVQEVTVTSAEAGQRLDRWMKRRFPGVTQGQVQKWLRKGQVRLNGGRVKADHRV 60 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAA--LADVILYEDDHILVLNKPSGTAVHGGSG 118 E+G+ VR+PP+ P + A + +++YEDD IL LNKP+G AV GG+ Sbjct: 61 ESGEVVRVPPIDPEAAAPPPSRPVVGPAEAEMMRGLVIYEDDDILALNKPAGLAVQGGAK 120 Query: 119 LSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLA 178 + L LVHRLDRDT GVLL+AK R+ +L ++ + K Y A Sbjct: 121 TLIHIDGMLDVFGEGEARPRLVHRLDRDTGGVLLLAKSRAVAATLSLAFQQHRIGKTYWA 180 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA-FATLVRCSPV 237 + +G + + K + G +R +++G+ + T ++ E A + P Sbjct: 181 ITKGVPHPLFGRIDMRIEK-AGEPGREKMRGTEQGQSALTDYQTVETAGQKAAFLALRPH 239 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGD-REFDRQLTEAGTGLNRLFLHAAALKFTH-PGTG 295 TGRTHQIRVH G PI D +YG L R H P G Sbjct: 240 TGRTHQIRVHLSAIGTPIVGDRKYGGAGAVLEGLPNQMHLFCRQM---------HVPRRG 290 Query: 296 E-VMRIEAPMDEGLKRCLQKLRNAR 319 + + A + G+ +R Sbjct: 291 RPPLVVTADLTGGMATSWSIFGFSR 315 >UniRef50_Q2G4F0 Pseudouridine synthase n=12 Tax=Alphaproteobacteria RepID=Q2G4F0_NOVAD Length = 436 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 105/318 (33%), Positives = 160/318 (50%), Gaps = 14/318 (4%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 V+ I D+AG R+D + + L V + + R R G++R++ KR + +LEAG + Sbjct: 10 QVRQFTIGKDDAGARLDRWFKRHLPQVGFATVSRWARTGQIRIDGKRADVDTRLEAGQIL 69 Query: 67 RIPP-----VRVAEREEEAVSPHLQKVAALADVILYE-DDHILVLNKPSGTAVHGGSGLS 120 R+PP V + E A P ++ LA+ ++ E D +VLNKP G A GGSG Sbjct: 70 RVPPGNATPVGTPGKGERARKPLTEEQIQLAESMVLEKDRAAIVLNKPPGLATQGGSGTH 129 Query: 121 FGVIEGLRALRPEAR-FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 V L A E LVHRLD+DTSGVLL+A+ + ++ + +K Y AL Sbjct: 130 EHVDGLLDAYVNEGEARPRLVHRLDKDTSGVLLIARTPGSAAFFSKRFSCRSARKIYWAL 189 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRV-SQEGKPSETRFKVEERYAF-ATLVRCSPV 237 V G ++ PL K GE+++ S +G+ + +R++V R A V P+ Sbjct: 190 VVGVPDVKDGLIELPLAKQPGTGGEKMMVDESGQGQSARSRYRVISRAGNAAAWVELQPL 249 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQ+RVH GHPI D +YG + G+ ++ LHA L+ HP G++ Sbjct: 250 TGRTHQLRVHMAAIGHPIVGDGKYGG----QAAFLTGSISRKMHLHARRLRIEHPE-GDM 304 Query: 298 MRIEAPMDEGLKRCLQKL 315 + + AP+ + L Sbjct: 305 IDVTAPLPAHFAASMASL 322 >UniRef50_Q1MQ60 Pseudouridylate synthases, 23S RNA-specific n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQ60_LAWIP Length = 541 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 84/309 (27%), Positives = 134/309 (43%), Gaps = 28/309 (9%) Query: 21 RIDNFLRTQL--KGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPVRVAERE 77 R+D FL L GV + + +++ G +++ K P +L+ G + I V Sbjct: 17 RLDQFLYNNLCTHGVSRERLKKVIVSGGCKIDDKVCFSPSTRLKVGMHIFIQLPEVV--- 73 Query: 78 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGL-SFGVIEGLRALRP---- 132 IL+ D+H+ ++NKP G VH ++ L P Sbjct: 74 ------SALLPEEGFLEILFSDEHLAIINKPPGLTVHPAPSCQESTLVHRLLKYFPKLIE 127 Query: 133 -EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSV 191 +VHR+D+DTSG+L +A L + ++ + K+YLALV G S + Sbjct: 128 QGGLRPGIVHRIDKDTSGLLCIALTEDTRLKLSKIFLDRKINKEYLALVHGVP-SMEGYI 186 Query: 192 QAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF--ATLVRCSPVTGRTHQIRVHTQ 249 PL ++ + V V+ +GKP+ T ++V R +++ + TGRTHQIRVH + Sbjct: 187 AVPLGRDP--KTKVKVAVNPKGKPAHTEWRVLHRGKNDVYSILALTIQTGRTHQIRVHMK 244 Query: 250 YAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLK 309 + GHP+ D Y ++ NR LHA L F HP TG+ M P + Sbjct: 245 HIGHPLVGDKLYAGGHVNKTFQ-----CNRQMLHAWKLSFEHPITGKKMNFLCPPPKDFL 299 Query: 310 RCLQKLRNA 318 + L Sbjct: 300 DTVSLLEQE 308 >UniRef50_B2KBB0 Pseudouridine synthase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBB0_ELUMP Length = 299 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 85/310 (27%), Positives = 141/310 (45%), Gaps = 43/310 (13%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEA 80 R+D FL + +I ++++G+V VN K KP + L GD V I Sbjct: 15 RLDLFLSENKPDYSRGLIQNLIKQGKVTVNGKERKPAWPLAEGDNVEIEW---------- 64 Query: 81 VSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF-----------GVIEGLRA 129 P ++ L D+I++ED ++ V+NKPSG VH S + ++ + A Sbjct: 65 --PSVENKTGLKDLIIFEDKNMFVINKPSGMLVHPQSPVWEENPAAAFIGEETLVSLILA 122 Query: 130 LRPEA-----RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQW 184 P+ LVHRLD+DTSGV+++AK ++ E + M K Y A+V G Sbjct: 123 NPPKNFEKGITRAGLVHRLDKDTSGVMIIAKNSKTQDAMVEMFANREMHKTYEAIVCGVV 182 Query: 185 QSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQI 244 + P+ + ++ S+ G+ + T + V +R +L++ PVTGRT+Q+ Sbjct: 183 PDDKGIINVPIGRVTGG----KIKASELGREAVTEYSVLQRKETVSLMKLHPVTGRTNQL 238 Query: 245 RVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPM 304 RVH + G+P+ D Y G RL LH+ + +F HP T + ++ Sbjct: 239 RVHMSWLGYPVLGDWLY-----------KGATAPRLMLHSKSAEFEHPFTSKPVKFTVAP 287 Query: 305 DEGLKRCLQK 314 + K + Sbjct: 288 PKDFKDSWKN 297 >UniRef50_A8IAL9 Pseudouridine synthase n=2 Tax=Xanthobacteraceae RepID=A8IAL9_AZOC5 Length = 384 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 105/348 (30%), Positives = 158/348 (45%), Gaps = 44/348 (12%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 V++ +T DEA R+D + +T + + +++R G+VRV+ R+K +L G VR Sbjct: 25 VELKQVTEDEADMRLDRWFKTHFPDLSFGHLQKLVRTGQVRVDGGRVKTSTRLSPGQSVR 84 Query: 68 IPPV------------------------------------RVAEREEEAVSPHLQKVAAL 91 +PP+ A + A L Sbjct: 85 VPPLGDDAAPAASPAQSKTKGEGAVAGEEGGFAGSGSPFAPAAHQVRAAARREQTDAEFL 144 Query: 92 ADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR-PEARFLELVHRLDRDTSGV 150 +IL+ED +LVLNKPSG AV GGSG + L ALR + + LVHR+D+DT+G Sbjct: 145 RSIILFEDKDVLVLNKPSGIAVQGGSGTFRHIDGMLDALRAKDGQKPRLVHRIDKDTAGC 204 Query: 151 LLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRV- 209 LL+AK R + L + R + +K Y ALV G + + L + + R+ R Sbjct: 205 LLIAKNRLSAAQLAKNFRSREARKIYWALVPGVPKPRQGRISTYLAREEAEERMRVARHG 264 Query: 210 SQEGKPSETRFKVEERYA-FATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDR 268 ++ + T + V E A + + PVTGRTHQIR H + HPI D +Y F+ Sbjct: 265 EEDASHAVTYYAVVEHAAQKMSWLSLKPVTGRTHQIRAHLAHIHHPIVGDPKY----FNI 320 Query: 269 QLTEAGTGL-NRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 + E GL NRL L A L HP ++ + AP+ + + L Sbjct: 321 ENWELPGGLQNRLHLLARRLVIPHPRGEGMIDVSAPLPPHMAQSWAVL 368 >UniRef50_C0QV86 Pseudouridine synthase n=2 Tax=Brachyspira RepID=C0QV86_BRAHW Length = 329 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 87/317 (27%), Positives = 156/317 (49%), Gaps = 24/317 (7%) Query: 3 TETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEA 62 + + K IT D+ G+R+D F+ +L + +S + L + VN K Y L+ Sbjct: 25 NNSDNKKSFIITEDDIGKRLDTFISEKL-NITRSQVKNYLTS--IIVNDAEKKLSYSLKL 81 Query: 63 GDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG 122 D + I + + + + +P + + ILYED ++LV+NKP+G +VH G Sbjct: 82 NDNIIIDSDNIFKEKTDTANPIPEN---IDLDILYEDKYLLVINKPAGMSVHCSPSEMSG 138 Query: 123 VIEGLRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKD 175 + + ++HRLD+DTSG++++ K + + S+ EQ + + ++K Sbjct: 139 TLVNALLYKIKDFDFVGNKERAGIIHRLDKDTSGLMIIGKNANIVSSIQEQFKNRTIKKI 198 Query: 176 YLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCS 235 Y A+V G + + + P+ ++ + + VR ++GK + T KV +R+ TL+ + Sbjct: 199 YHAIVVGVLKDNYIEINLPIGRHHVYRKKMTVR--EDGKEALTHIKVLKRFNSHTLIEIN 256 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTG 295 TGRTHQIRVH+ Y G P+A D Y +++ + + L L A ++F HP T Sbjct: 257 LKTGRTHQIRVHSSYKGFPVAGDKIY---------SKSFSKYSGLMLVAKKIEFMHPITK 307 Query: 296 EVMRIEAPMDEGLKRCL 312 E++ E + L Sbjct: 308 ELLDFEIDYPDYFTNFL 324 >UniRef50_C7LWM1 Pseudouridine synthase, RluA family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LWM1_DESBD Length = 526 Score = 301 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 94/319 (29%), Positives = 151/319 (47%), Gaps = 29/319 (9%) Query: 12 AITADEAGQRIDNFLRTQLK--GVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRI 68 + + GQR+D F +T L+ GV +S + ++ G R+N + K +L G + + Sbjct: 7 KVGVADVGQRLDVFWQTCLEEEGVGRSRVQAWIKDGRARINGQVCSKAATRLMPGQTLTL 66 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF-GVIEGL 127 P E + +V P + + D+ ++V+NK VH ++ ++ + Sbjct: 67 AP----EYTDSSVVP-----DDGPLNVFFADEDLVVVNKTPAMTVHPAPSVAEPTLVHRV 117 Query: 128 RALRP-----EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 P +VHRLD+DTSG++++A SA SL + + + K+YLALV G Sbjct: 118 AHHFPALLSQSGERPGIVHRLDKDTSGLIVLALSESARLSLTQAFASREVYKEYLALVAG 177 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF--ATLVRCSPVTGR 240 S +V L ++ R+ V + G+ +ETRF++ A A+LVR +TGR Sbjct: 178 VPDS-SGTVSLALGRHP-SIKTRMAVVERGGRAAETRFELLWSAADRSASLVRVRIMTGR 235 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH GHP+ D Y D+ + R LHA L+F HP + E M Sbjct: 236 THQIRVHMAALGHPLLGDAVYADK-------QTAARAPRQMLHAWQLRFEHPRSFESMEF 288 Query: 301 EAPMDEGLKRCLQKLRNAR 319 AP + + L++L R Sbjct: 289 CAPPPDDFLQVLRELCRER 307 >UniRef50_Q0ANT2 Pseudouridine synthase n=2 Tax=Hyphomonadaceae RepID=Q0ANT2_MARMM Length = 330 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 92/318 (28%), Positives = 150/318 (47%), Gaps = 14/318 (4%) Query: 6 PSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDE 65 V+ + + A E G R+D + + + V M+ ++ RKG++RV+ R+K + ++ G E Sbjct: 2 SGVQTIKVEATEDGSRVDRWFKRRFPHVSAIMVQKLCRKGQIRVDGGRVKGDSRVHEGQE 61 Query: 66 VRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIE 125 +RIPP+ + +A + +++Y+DD ++ NKP+G AV GGS + + Sbjct: 62 IRIPPLPEPGERPPVNRMSDEDIAYVKSLVIYQDDELIAFNKPAGLAVQGGSKTTRHLDG 121 Query: 126 GLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 L A LVHRLD+DTSG+L+V K A L + + +K Y A+ G + Sbjct: 122 MLDAFGEGLDRPRLVHRLDKDTSGILIVGKGPKATARLAKAFQSHKTRKTYWAIAIGVPK 181 Query: 186 SHVKSVQAPLLKN----ILQSGERIVRV---SQEGKPSETRFKVE-ERYAFATLVRCSPV 237 + ++ + K + E +V + + + TR+ V E A+ V PV Sbjct: 182 PKMGEIKGFMRKAAASGVDSERETMVAAGHGDEGAQHALTRYVVIGEAGQKASWVALRPV 241 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQ+RVH G I D +Y RL LHA L+ PG G+ Sbjct: 242 TGRTHQLRVHLAAMGTAILGDKKY-----TCHRPAPEDLGRRLCLHARRLEIPRPG-GKP 295 Query: 298 MRIEAPMDEGLKRCLQKL 315 + + A + LK+ L Sbjct: 296 LVLTADLPPALKKIYDTL 313 >UniRef50_B0K860 Pseudouridine synthase n=11 Tax=Thermoanaerobacterales RepID=B0K860_THEP3 Length = 285 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 89/307 (28%), Positives = 143/307 (46%), Gaps = 30/307 (9%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + + +E G ++NFLR KG K +I +GE+ VN + + L+ GD + + Sbjct: 3 LVVGENEKGVILENFLRN--KGFSKRLIRIYKWQGEILVNGIKSNVKRILQPGDVIDL-- 58 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 + + ++P L I YED+ IL++NKP+ VH G + A Sbjct: 59 --ILPENDSNIAPE-----KLDLDICYEDEEILIVNKPANMVVHPTKRYQSGTLANGVAW 111 Query: 131 RPEARFL----ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 + + L V+RLDR TSG+++ AK+ L K M K Y A+V G+ Sbjct: 112 YFKEKGLKALIRPVNRLDRGTSGLVVFAKRPFMQYYLQII---KPMTKLYFAVVEGKM-E 167 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 + P+ + ER+ VS+EG + T +KV + +L++ TGRTHQIRV Sbjct: 168 GEGRIDLPISRKPQSGIERM--VSEEGDRAITNYKVVKSSKRFSLLKVKIETGRTHQIRV 225 Query: 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDE 306 H + GHPI D YG + + R LHA L F HP + + + +P+ + Sbjct: 226 HLSHIGHPIVGDTLYGSSD---------DYIKRQALHAYRLTFVHPLEEKSISVYSPLPQ 276 Query: 307 GLKRCLQ 313 ++ L+ Sbjct: 277 DIQNLLK 283 >UniRef50_D1AV01 Pseudouridine synthase n=2 Tax=Bacteria RepID=D1AV01_STRM9 Length = 297 Score = 301 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 85/307 (27%), Positives = 139/307 (45%), Gaps = 32/307 (10%) Query: 20 QRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEE 79 +RID +L +L +S I +++ + VN K+ K YK+ GDE+ I + E + Sbjct: 11 ERIDIYLSKKLDE-TRSRIQELIKSNNILVNGKKTKASYKVNFGDEIFIDIPLLKEVDII 69 Query: 80 AVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG--------LRALR 131 + +YED ++ ++NK +G VH G + L + Sbjct: 70 PQDIDIDI--------VYEDKYLAIINKYAGMVVHPSKGHEEDTLVNAIMYKIKDLSGIN 121 Query: 132 PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSV 191 + R +VHRLD++TSG++++AK L E + K ++K Y A+V+G+ + Sbjct: 122 GDLR-PGIVHRLDKNTSGLIIIAKDDKTHFKLSEMFKNKEIKKIYYAIVKGKVNKKSGRI 180 Query: 192 QAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYA 251 + + +N + + V GK + T F+V + +L++ TGRTHQIRVH + Sbjct: 181 ETMIGRNPND--RKKMAVVDNGKLAITNFEVIDSNEKFSLLKVDLETGRTHQIRVHLSHF 238 Query: 252 GHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRC 311 PI D YG ++ +R LHA L F HP T E + + R Sbjct: 239 FFPILGDSVYGRKD----------EYDRQMLHAYMLNFIHPITLEKIDVIGNFHSDFLRA 288 Query: 312 LQ--KLR 316 L KLR Sbjct: 289 LSNTKLR 295 >UniRef50_D1U4S9 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4S9_9DELT Length = 596 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 85/320 (26%), Positives = 145/320 (45%), Gaps = 25/320 (7%) Query: 14 TADEAGQRIDNFLRTQL--KGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPP 70 + + G R+D F +L +GV + + + G V+ + + + ++KL + +RI Sbjct: 23 PSSDCGLRLDKFWARELADEGVSRGRVQEWIESGLALVDGEVVTRGKHKLAGRETLRIGD 82 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF-GVIEGLRA 129 VA ++ A + +++ED H+ V++K +G H G ++ L Sbjct: 83 AGVAPSDDAA------QAVPGELEVVFEDAHVAVIDKRAGLTTHPAPGEPGPTLVNHLLH 136 Query: 130 LRPEA---------RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 P+ + +VHRLD+DTSG+++VA L + ++K YLA+V Sbjct: 137 RWPDVASDISGMDRQRPGIVHRLDKDTSGLMVVALTEGDRLRLAADFAGRRVRKVYLAVV 196 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEER--YAFATLVRCSPVT 238 G+ ++ AP+ ++ Q R+ V++ G+ + + ++V A+LV T Sbjct: 197 LGRPAQPAGTIDAPMGRHPSQKT-RMAVVARGGREAVSDYRVLWTGPRGLASLVAVRIHT 255 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDR---EFDRQLTEAGTGLNRLFLHAAALKFTHPGTG 295 GRTHQIRVH + GHP+ D YG R E+ R+ R LHA L F HP T Sbjct: 256 GRTHQIRVHMAHIGHPLLGDSAYGPRENVEWSRRPDRLAGLAPRQMLHAFHLSFRHPATC 315 Query: 296 EVMRIEAPMDEGLKRCLQKL 315 E + + L L Sbjct: 316 ERVTLWRRPPADFCTLLAAL 335 >UniRef50_D1N7N8 Pseudouridine synthase, RluA family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7N8_9BACT Length = 323 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 95/325 (29%), Positives = 144/325 (44%), Gaps = 39/325 (12%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRI 68 I A +AG R+D L + G +S + R++R G V+ + ++ P Y + AG + + Sbjct: 7 TFQIEAGDAGTRLDRCLSRLIPGESRSFLQRLIRDGLVKADGVALEVPRYPVRAGMSIAV 66 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGL 127 ILYEDD +LV++KP+G VH +G G + L Sbjct: 67 ELPEEESP--------EPAAEPFEFPILYEDDVMLVIDKPAGVVVHPAAGNPTGTVVNAL 118 Query: 128 RALRPE--------ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 P+ +VHRLD+DTSG L VAK +A L + +K YLA+ Sbjct: 119 LGRYPQLAEQLACTTSRPGIVHRLDKDTSGCLAVAKTANAQFKLSTAFAGRETRKTYLAI 178 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFAT--------- 230 RG + + ++ + +++ V + GK + TR++VE T Sbjct: 179 TRGVPIRRSGELSTLIGRHPVSR-QKMAVVERNGKLAITRYRVE-----YTGMLDGVEIG 232 Query: 231 LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFT 290 ++ +TGRTHQIRVH G P+ D YG A G+ R LHA L Sbjct: 233 VLAVRILTGRTHQIRVHLASLGVPVLGDAVYGG------ARTAVAGVERQLLHAWKLCVP 286 Query: 291 HPGTGEVMRIEAPMDEGLKRCLQKL 315 HP TG M AP E ++R L+++ Sbjct: 287 HPATGTPMEFTAPPPEDIRRILERI 311 >UniRef50_A8MF48 Pseudouridine synthase n=12 Tax=Clostridiaceae RepID=A8MF48_ALKOO Length = 305 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 96/321 (29%), Positives = 158/321 (49%), Gaps = 24/321 (7%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 + + ++ I D+AG+ + L+ +L ++ R+ R + VN + +K + Sbjct: 5 EKQKENMIIYEAENDDAGKELKKILKNKL-DFSSRLLARVKRGKTIFVNGEYLKYHETIN 63 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 AGDE++I V E E P+ + + +YED ++++NK G H Sbjct: 64 AGDEIKI----VMEDE-----PNHFTLQDVPFEAVYEDVDLILVNKEPGIVTHPTKSHPD 114 Query: 122 GVIEGLRALRPEARFL----ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 I AL +++ + V+RLD DTSG+L++AK A L EQ++E ++K Y+ Sbjct: 115 WTIANGAALYLKSKGIDCKVRFVNRLDMDTSGLLIIAKNAYAHHVLSEQMQEDRIEKKYI 174 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPV 237 A V G + ++AP+ + + S +R+ V + G+ S T FKV ERY AT+V + Sbjct: 175 AFVWGVIKEDEGRIEAPIYRTTMDSIKRV--VDERGQESITEFKVLERYKNATMVEVKLL 232 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQIRVH ++ GHP+ D YG E ++R LHA L+F P Sbjct: 233 TGRTHQIRVHMEHLGHPLIGDTLYG--------KEDAELIDRQALHAEYLRFWQPRFKRA 284 Query: 298 MRIEAPMDEGLKRCLQKLRNA 318 + ++A + L KL+ Sbjct: 285 IEVKADLPADLLSLRDKLKEM 305 >UniRef50_A8F4Z7 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A8F4Z7_THELT Length = 294 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 104/310 (33%), Positives = 161/310 (51%), Gaps = 26/310 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIP 69 ++I + + +R+D FLR +LK VP S IY++LR G V+VN K + KP +L GD+V I Sbjct: 8 LSINEENSYRRLDKFLRNELKAVPLSEIYKLLRTGCVQVNGKTVRKPYTELYVGDKVTIK 67 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 R+++ + L ILYEDD++L+LNK +G +H + Sbjct: 68 ADLAVYRQKKDL-----PSIPLKLDILYEDDNLLILNKKAGITIHPSEKTRSTTLIQGLH 122 Query: 130 LRP--EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 + LVHRLDRDTSGVL++AK R+L R + ++K+Y+ LV G+ Sbjct: 123 FYGAKKGFKPHLVHRLDRDTSGVLVIAKNVKTARTLSHMFRNRLVKKEYITLVSGKI-FG 181 Query: 188 VKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVH 247 + PL +G + T +KV E + +L+R TGRTHQIR H Sbjct: 182 DGFIDKPL----------------DGSEALTEYKVLENFRDTSLLRVILHTGRTHQIRKH 225 Query: 248 TQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEG 307 G+P+ D YGD++ + +L + L R FLH + FT+P V+ I+AP+ + Sbjct: 226 FALIGNPVVGDILYGDKKVN-ELFKKKHNLRRQFLHCIRISFTNPSEPGVISIKAPLPDD 284 Query: 308 LKRCLQKLRN 317 L+R ++ L+ Sbjct: 285 LERVIKGLKK 294 >UniRef50_A9IIW7 Pseudouridine synthase n=5 Tax=Bordetella RepID=A9IIW7_BORPD Length = 324 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 92/316 (29%), Positives = 137/316 (43%), Gaps = 24/316 (7%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 + + + A R+D L L G +S + + G V+VN K + GD + + Sbjct: 22 QFITVPAGTRADRLDKILAALLDGHSRSRLQGWIEAGWVQVNGAPAKVRQVVGPGDVLAV 81 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGL 127 E A +P +A ++ E +V++KP+G H G+G G + GL Sbjct: 82 --WEQPAPESLAFTPE-----PIAFAVVAESPDWIVVDKPAGLVTHPGAGNWSGTLLNGL 134 Query: 128 RALRPEARFL---ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQW 184 PE + +VHRLD+DTSG+++VA+ A L QL+ + M ++Y+AL G W Sbjct: 135 LHRYPELARVARAGIVHRLDKDTSGLMVVARNELAQTHLVRQLQARSMGREYIALAHG-W 193 Query: 185 QSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY----AFATLVRCSPVTGR 240 V P+ ++ V KP+ T + R T V C TGR Sbjct: 194 LPVAGKVDRPIGRDARVPVRMSVERPIAPKPAITHYAPLRRGRAPDGPVTEVACRLETGR 253 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH GHP+ D YG R G R LHA AL F PG G Sbjct: 254 THQIRVHLASLGHPLLADTLYGGR--------LTAGATRQMLHARALHFDDPGGGGPAAF 305 Query: 301 EAPMDEGLKRCLQKLR 316 A + +++ + L+ Sbjct: 306 RADPPDDMRQVQEALQ 321 >UniRef50_C0Z877 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z877_BREBN Length = 310 Score = 300 bits (770), Expect = 4e-80, Method: Composition-based stats. Identities = 97/311 (31%), Positives = 156/311 (50%), Gaps = 19/311 (6%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 ++ + G ++ +R +L V M+ R+ R + +N+K+ + +++AGD + + Sbjct: 9 YTVSEQDTGMNVEQIVRQKL-NVSGRMMQRLTRSKGILLNRKQPFLQRQVKAGDTIAVRV 67 Query: 71 V----RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHG---GSGLSFGV 123 + +V + + P + ILYEDDH+L+ NKP+G VH + Sbjct: 68 IERQEQVPRQPQHDTKPEGPNTPMPSIDILYEDDHLLIANKPAGMMVHPIKQETDTLVHA 127 Query: 124 IEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 + + A R E + VHRLD+DTSG +LVAK + LRE G+ ++YLA+ G Sbjct: 128 LAAVLAARGEQTSVHPVHRLDKDTSGAILVAKSSYGHQLADRLLREGGIHREYLAVASGV 187 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 ++ AP+ ++ +R RV + G P+ T ++V++ TL R TGRTHQ Sbjct: 188 LSEGAGTIDAPIGRDARHPTKR--RVVESGDPAITHYEVQQTSEEMTLARVWLETGRTHQ 245 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH + GHP+A D YG A L R LHA+ L F HP + + +EAP Sbjct: 246 IRVHFAHIGHPLAGDTMYGG---------ARGLLRRQALHASKLSFLHPLLEKEIVVEAP 296 Query: 304 MDEGLKRCLQK 314 + +KR +Q Sbjct: 297 IPSDMKRLMQA 307 >UniRef50_C8S0A2 Pseudouridine synthase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S0A2_9RHOB Length = 356 Score = 300 bits (768), Expect = 5e-80, Method: Composition-based stats. Identities = 88/343 (25%), Positives = 145/343 (42%), Gaps = 46/343 (13%) Query: 12 AITADEAGQRIDNFLRTQLKG---VPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVR 67 + ++ R+D L Q+ + +S + +++ G+V + + P+ ++ G E Sbjct: 22 VVIGEDPPDRLDKALARQVPEDAALSRSRLMKMIADGDVTLEGVAVTNPKARVAEGQE-- 79 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 +R+A + P + +++ED ++V++KP G VH G G + Sbjct: 80 -YLLRLAPAVDIDAQPE-----DIPLTVVWEDADLIVVDKPVGMVVHPAPGSYTGTLVNA 133 Query: 128 RALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 A+ +VHR+D+DTSG+L+VAK A L Q + + Y+AL Sbjct: 134 LLHHCGDTLSGVGGAKRPGIVHRIDKDTSGLLVVAKTDRAHHGLAAQFEAHSVTRHYIAL 193 Query: 180 VRGQW----------------QSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVE 223 V G + + L ++ + V + G+ + TR +V Sbjct: 194 VHGAPNAADPRLRGIRGVSFEPGGIVCIATNLARHKTDRQRQAV-LFDSGRHAVTRVRVL 252 Query: 224 ERYAF---ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDRE------FDRQLTEAG 274 E Y A LV C TGRTHQIRVH +AGH + D YG R + +A Sbjct: 253 ESYGTPPVAALVECWLETGRTHQIRVHMSHAGHALLGDQTYGGRRKVAPKAVGEAVAQAA 312 Query: 275 TGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 R LHAA+L F HP +GE + +P+ + LR Sbjct: 313 NDFPRQALHAASLGFVHPVSGEELLFTSPLPADMAALTAALRG 355 >UniRef50_D2L0S2 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L0S2_9DELT Length = 558 Score = 299 bits (767), Expect = 8e-80, Method: Composition-based stats. Identities = 89/306 (29%), Positives = 132/306 (43%), Gaps = 24/306 (7%) Query: 19 GQRIDNFLRTQLKG--VPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPVRVAE 75 G R+D F +L V ++ + + G V+ KP KL G+ + + +VA Sbjct: 23 GTRLDVFWSARLADLEVSRARVRAAIEGGLATVDGADCRKPGLKLRGGETLTLNLPQVAS 82 Query: 76 REEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRALRPEA 134 A + +LY D + VL+KP G VH GL G + L P Sbjct: 83 ET---------VAEAGSLRVLYADKELAVLDKPPGLTVHPAPGLPEGTLVNRLLHHFPGL 133 Query: 135 R-----FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVK 189 R +VHRLD+DTSG+L+VA +L + + K YLALV G+ Sbjct: 134 REMAGERPGIVHRLDKDTSGLLMVALTEPVRLALAADFAARQVHKTYLALVHGRPDGKGG 193 Query: 190 SVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF--ATLVRCSPVTGRTHQIRVH 247 ++ P+ ++ + V + G+P+ +R++ A+L+ + TGRTHQIRVH Sbjct: 194 DIRLPIGRDPKYRTKMAV-PHKGGRPAHSRWRPVWTAPDGTASLLEVTIFTGRTHQIRVH 252 Query: 248 TQYAGHPIAFDDRYGDRE---FDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPM 304 GHPI D YG + + R+ +R LHA L FTHP E P Sbjct: 253 MAAIGHPIIGDAVYGPHQHAAWKRRGGAIARLASRQMLHAWKLSFTHPVLKEPRSFTCPP 312 Query: 305 DEGLKR 310 R Sbjct: 313 PPDFWR 318 >UniRef50_B5ZBC1 RluA n=15 Tax=Ureaplasma RepID=B5ZBC1_UREU1 Length = 299 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 83/303 (27%), Positives = 140/303 (46%), Gaps = 17/303 (5%) Query: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPVRVAER 76 + +RID FL ++ ++ I ++L + V VN I K Y L+ D V I + Sbjct: 9 SPKRIDKFLV-EVTDYSRTSIKKMLEQNLVLVNDNIITKQSYLLQKNDSVEIKNEQCVID 67 Query: 77 EEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARF 136 ++ + P A I++ED +LV+NKPSG VH S + + Sbjct: 68 SQKELLPF-----ACPLEIVFEDQDLLVINKPSGMLVHPTSFQEQNTLANALKHYLKTDD 122 Query: 137 LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH--VKSVQAP 194 + HRLD++TSG++++ K + AL L +Q +K ++K Y A+V ++ H + P Sbjct: 123 FYITHRLDKNTSGLIVICKNQKALCCLQQQFMQKTVKKSYYAIVHNRFDMHHLHFMINEP 182 Query: 195 LLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHP 254 + + ++ K + + KV E+Y LV S +TGRTHQIRVH ++ HP Sbjct: 183 IGHSYQDKLRMKTGDAKNVKEAISIVKVIEQYQNTALVEVSIITGRTHQIRVHMRHINHP 242 Query: 255 IAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQK 314 I D YG + +LH+ + F HP T E++ + M +++ Sbjct: 243 IYNDPLYGISKHTTPYE--------QYLHSFYISFIHPSTNEIVEFKTLMPNEFINLIKE 294 Query: 315 LRN 317 + Sbjct: 295 WKT 297 >UniRef50_B8J173 Pseudouridine synthase, RluA family n=2 Tax=Desulfovibrio RepID=B8J173_DESDA Length = 525 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 86/308 (27%), Positives = 139/308 (45%), Gaps = 27/308 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRIP 69 + ITA +AG+R+D L + + ++ + ++++ G V+ K P K+ G V + Sbjct: 6 LKITAGQAGKRLDRILGATVPELSRAALQKVVQAGCCTVDGLPEKRPAAKMRMGQTVTL- 64 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF-GVIEGLR 128 + P + +L++DDH++V NKP+G VH +++ L Sbjct: 65 --------DLPEHPDRLQPEEGHLELLWQDDHLVVCNKPAGLTVHPCPSCPEQTLVQRLL 116 Query: 129 ALRP-----EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 P E + +VHRLD+DTSG+L+VA + +L E+ + K+YLALV G Sbjct: 117 GRFPQLSRLEGQRPGIVHRLDKDTSGLLVVALTEADCLALAAAFAERQVHKEYLALVSG- 175 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRV-SQEGKPSETRFKVEERY--AFATLVRCSPVTGR 240 + PL ++ + V Q G+ + T ++ +L+ TGR Sbjct: 176 LPPLEGQCREPLGRHPTAKIKMAVVPEDQGGRNAFTEWRRLWNTDDGSVSLLAVRIHTGR 235 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH + G+P+ D Y + R LHA L FTHP +GE MR Sbjct: 236 THQIRVHMTHLGYPLLGDRLYAPKAVQNM-------APRQMLHAWRLGFTHPASGEDMRF 288 Query: 301 EAPMDEGL 308 P + Sbjct: 289 TCPPPHDM 296 >UniRef50_B8FTI5 Pseudouridine synthase n=2 Tax=Desulfitobacterium hafniense RepID=B8FTI5_DESHD Length = 302 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 94/310 (30%), Positives = 149/310 (48%), Gaps = 24/310 (7%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 + + G + + L + + +I + + V VN + +AG+ + + Sbjct: 9 TYTLQPQDDGVKYQDILYRRF-HFSRKLIQHLKQGERVWVNGAFTFLTTRGKAGETLSVQ 67 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIE---- 125 + + L ILYEDD+ + +NKP+G VH G I Sbjct: 68 L--------QPPEINSIPGENLPLEILYEDDYFIAINKPAGQVVHPTPRYPRGTIGNAVV 119 Query: 126 GLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 G + EAR +HR+DR+TSGV+++ K + A + + Q + K Y +V GQ Sbjct: 120 GYWLAKGEARPFRPIHRIDRNTSGVVVIGKNQFAHQQMAWQHAHGRIHKCYRGIVEGQVM 179 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245 +++AP+ +R ++S EG P+ T +KV ERY A+L+ TGRTHQIR Sbjct: 180 EDQGTIKAPIALAPDSFIQR--QISPEGSPAVTLYKVLERYQDASLLEFILETGRTHQIR 237 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMD 305 VH Q+ GHP+ DD YG +NR LH++ +F HP TGE+ I+AP+ Sbjct: 238 VHCQHLGHPLLGDDLYGGN---------LARINRQALHSSIYEFNHPLTGELTTIQAPLP 288 Query: 306 EGLKRCLQKL 315 E L+R L++L Sbjct: 289 EDLQRLLREL 298 >UniRef50_C8NZX3 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZX3_ERYRH Length = 298 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 99/314 (31%), Positives = 158/314 (50%), Gaps = 25/314 (7%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 IT+ G RID+FL L + +S I +++ G + N K YK + D + Sbjct: 4 WIITSKTLGLRIDHFLNEHL-DLSRSKIASMIKDGTILCNDMPTKANYKTKLNDCITAST 62 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG-----LSFGVIE 125 ++ + E V + ++YED+++LV+NKP G VH G+G L G++ Sbjct: 63 YQIKTLDIEPVK--------MDIDVVYEDEYLLVVNKPRGLVVHPGNGVKSDTLLHGLLY 114 Query: 126 GLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 L + LVHR+DR+TSG+L++AK + L EQL +K M + Y ALV G Sbjct: 115 YLNSNCDHYIRPGLVHRIDRNTSGLLVIAKDDKTHQFLAEQLLDKTMNRTYYALVHGVLP 174 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQ-EGKPSETRFKVEERYAFATLVRCSPVTGRTHQI 244 + AP+ + +S +I+ V+Q KP+ T F+ E Y ++L+ C TGRTHQI Sbjct: 175 QAHVLIDAPIGPD--KSNTKIMTVNQARSKPARTHFEKIETYINSSLICCKLETGRTHQI 232 Query: 245 RVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPM 304 RVH +A P+ D +YG + T +L AA L+F HP ++M+ E P+ Sbjct: 233 RVHALHANIPLHGDPQYGH--------PSDTDKTGQYLCAARLEFVHPKYLKLMQFEIPL 284 Query: 305 DEGLKRCLQKLRNA 318 + + +L ++ Sbjct: 285 PRYFQDKITELSHS 298 >UniRef50_C8X1I9 Pseudouridine synthase, RluA family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1I9_DESRD Length = 547 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 104/316 (32%), Positives = 156/316 (49%), Gaps = 25/316 (7%) Query: 11 VAITADEAGQRIDNFLRTQLK--GVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVR 67 + A EAG+R+D FL +L GV +S I + +R+ VRV + + K+ G +V Sbjct: 15 FVVEAGEAGKRLDKFLSDRLADLGVSRSRISQWIRQERVRVAGALCLQGKTKVLNGQKVV 74 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EG 126 + +A + + P + V ++Y D ++V+NK +G VH G+G G + Sbjct: 75 L----LAPSLQSGIKPEVGPVE-----VVYSDPDVVVVNKAAGVTVHPGTGCESGTLVHH 125 Query: 127 LRALRPE-----ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 L AL PE +VHRLD+DTSG+L VA SA +L + + K+YL LV Sbjct: 126 LAALYPELARFDGERPGVVHRLDKDTSGLLTVALNESARLALTRSFARREVDKEYLTLVH 185 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF--ATLVRCSPVTG 239 G+ ++ +V PL ++ QS R+ V + GK + TRFK +L+R +TG Sbjct: 186 GRPEAE-GTVDHPLGRDP-QSKIRMAVVPRGGKEALTRFKRVWTSPDGRVSLLRVRILTG 243 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDR---EFDRQLTEAGTGLNRLFLHAAALKFTHPGTGE 296 RTHQIRVH Y G P+ D YG + F R LHA L F HP +G Sbjct: 244 RTHQIRVHMAYLGFPLVGDALYGPQAQAAFQRSRPLLARLAKHHMLHAWRLAFPHPRSGR 303 Query: 297 VMRIEAPMDEGLKRCL 312 ++ E M + + R + Sbjct: 304 MVCCEQAMPKAMWRLV 319 >UniRef50_C0ZCK6 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZCK6_BREBN Length = 302 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 110/320 (34%), Positives = 164/320 (51%), Gaps = 25/320 (7%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 MK E + + D+A I N LR + K +P+ ++ + + EV ++ + + Sbjct: 4 MKKEGEWLVALLRDKDDA-IPIGNLLREEWK-LPRKQVHLLFQHKEVLLDGEPVAQHVVG 61 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 +AG E+R+ R+ + E + P A+ A ILYEDDH+L++NKP G +H Sbjct: 62 KAGQEIRL---RMCKPEALGLDP-----ASEAPEILYEDDHLLIVNKPVGLLLHPTERYH 113 Query: 121 FGVIEGLRALR----PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDY 176 ++ L + + VHRLD+DTSGV+L AK A L E LRE+ +++ Y Sbjct: 114 HVTLDHLVSGHFFRTGLEAKVRHVHRLDQDTSGVVLYAKHPWASALLDEMLRERTIKRTY 173 Query: 177 LALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSP 236 +A V GQ + P+ K+ R RV+ G P+ T ++V+ER+ AT V C Sbjct: 174 VAYVSGQMPKERGKINEPIGKDRNHGTRR--RVTPNGDPAITHYQVKERFQTATKVECQL 231 Query: 237 VTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGE 296 TGRTHQIRVH + GHP+ D+ YG + + R LHAA LKF HP GE Sbjct: 232 ETGRTHQIRVHFSHIGHPLLGDELYGGKR---------ELIKRQALHAAVLKFEHPFGGE 282 Query: 297 VMRIEAPMDEGLKRCLQKLR 316 V+ + AP+ L +KLR Sbjct: 283 VIEVTAPLPLDLFHLEKKLR 302 >UniRef50_B3DV48 Pseudouridine synthase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DV48_METI4 Length = 325 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 99/303 (32%), Positives = 153/303 (50%), Gaps = 24/303 (7%) Query: 19 GQRIDNFLRTQLKGVPKSMIYRILRKGEVRV-NKKRIKPEYKLEAGDEVRIPPVRVAERE 77 GQR+D FL + L V ++ I + + G++R+ N ++P +++ +E+ I E Sbjct: 23 GQRLDLFLSSLL-NVSRNKIKKKILSGDLRLKNGAVLEPSHRIRGIEEIEIRGGLTEE-- 79 Query: 78 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRALRPEAR- 135 P L K +A ILYED+ IL++NK G VH G G + L E+ Sbjct: 80 ----IPSLPKAEEIALEILYEDEEILIVNKQRGMVVHPSCGHWSGTLVNSLLFHYGESLP 135 Query: 136 -----FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKS 190 +VHRLD+DTSGV+++AK +L+SL Q ++ +QK YL L + ++ S Sbjct: 136 GSSLLRPGIVHRLDKDTSGVMVIAKTERSLKSLLLQFSQRTVQKVYLCLCKNRFPYLRYS 195 Query: 191 VQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQY 250 +A + ++ + V +GK +ETRF + + A+ ++C PV+GRTHQIRVH + Sbjct: 196 FEANIHRHASDRKKMAVH-RLKGKTAETRFTLLFASSQASFLKCEPVSGRTHQIRVHLSH 254 Query: 251 AGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKR 310 G PI D YG L LHA ALK HP +G+ + AP+ + K Sbjct: 255 LGFPIIGDPLYGKGVRKYPFP--------LLLHAYALKIEHPRSGKKIEFMAPLPQDFKE 306 Query: 311 CLQ 313 L Sbjct: 307 ALD 309 >UniRef50_B1ZYX0 Pseudouridine synthase n=4 Tax=Verrucomicrobia RepID=B1ZYX0_OPITP Length = 311 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 89/307 (28%), Positives = 148/307 (48%), Gaps = 23/307 (7%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEA 80 R D L + + + R G V I + + AGD + + E +A Sbjct: 16 RADKVLAAGVTEHSRVALQRSFDAGLVTRGGVPIGRDTTVTAGDTIEFSFAEIKPTEIKA 75 Query: 81 VSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGG-SGLSFGVIEGLRALR-------P 132 V + +L+ED H+L +NK +G VH G + ++ L A Sbjct: 76 V--------DIPLTVLFEDKHMLAVNKAAGMVVHPGVATSEDTLVHALLAHCAGSLSGIG 127 Query: 133 EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQ 192 +VHRLD++T+GV++VAK +A R+L +Q + ++K+Y+ALV G + S+ Sbjct: 128 GVERPGIVHRLDKETTGVIVVAKTDAAHRALADQFATRTLKKEYVALVAGVPRLLSGSID 187 Query: 193 APLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF-ATLVRCSPVTGRTHQIRVHTQYA 251 + ++ + + V + G+P+ T +++ E + LVRC TGRTHQIRVH + Sbjct: 188 RAIARHPVHRHR--MTVGEGGRPARTDWELVEAFGDIGALVRCRIFTGRTHQIRVHLKSL 245 Query: 252 GHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRC 311 GHPI D YG + R T+ R+ LHA L THP +G+ + + AP+ + Sbjct: 246 GHPILGDALYGWKPEPRLATQPA----RVMLHAEHLVLTHPISGKELDLRAPLPKDFVAM 301 Query: 312 LQKLRNA 318 +++LR + Sbjct: 302 IKELRRS 308 >UniRef50_A6CF60 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CF60_9PLAN Length = 317 Score = 297 bits (761), Expect = 4e-79, Method: Composition-based stats. Identities = 96/317 (30%), Positives = 153/317 (48%), Gaps = 20/317 (6%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + + G RID FL + + RI++ G +VN P ++ G ++ I Sbjct: 9 LIVEDYLDGARIDRFLSRHFRNYSTHRLQRIVQAGFAKVNGIPADPLQRVFRGQQINI-- 66 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 R+ E ++ P L +LYED ++++NKP G H + G + Sbjct: 67 -RLPEPPDKTYDPE-----PLPLEVLYEDAWLIIVNKPPGMIAHPAGNILSGTVANALQY 120 Query: 131 RPEAR-------FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 + + +VHRLD+ TSG+L+VAK+ RSL Q ++ + K YLA+VR Q Sbjct: 121 YLDQQTGVRSLLRPGIVHRLDQFTSGILIVAKEHLGHRSLSIQFQQNRVSKSYLAIVRDQ 180 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQ--EGKPSETRFKVEERYAFATLVRCSPVTGRT 241 + + + ++ Q+G + + K + TRF+V ER +L+R P TGR Sbjct: 181 PKQDLFENNDAIGEHPTQAGVCMTTHPEALRAKAAFTRFEVVERLPGHSLIRAFPKTGRL 240 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVH G PI DD YG+ D +L + ++R LHA ++F+HP T M I Sbjct: 241 HQIRVHLADLGFPIIADDFYGN---DARLLDDRELISRQALHAEQIEFSHPVTSLRMNIS 297 Query: 302 APMDEGLKRCLQKLRNA 318 A + + LQ++R+A Sbjct: 298 AGVPADFQLALQRIRSA 314 >UniRef50_B3T0Q8 Putative RNA pseudouridylate synthase n=2 Tax=prokaryotic environmental samples RepID=B3T0Q8_9ZZZZ Length = 320 Score = 296 bits (760), Expect = 5e-79, Method: Composition-based stats. Identities = 129/310 (41%), Positives = 185/310 (59%), Gaps = 5/310 (1%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 V ++ D+ G R+DN+L +KG+PKS IYR++RKGEVR+N KR KP ++ D VRIPP Sbjct: 10 VIVSRDDDGMRLDNYLIKIIKGMPKSRIYRMIRKGEVRINSKRAKPRSRVHVNDTVRIPP 69 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 V E + S + +++++E+D L++NKPSG AVHGGSG+ G+IE LR+ Sbjct: 70 YAVNEPKTNVSSVRKDDFRRINNIVIFENDSFLLVNKPSGLAVHGGSGIHLGLIELLRSF 129 Query: 131 RPE-ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVK 189 R + LELVHRLD+DTSG LLV+KK+S LR LHE RE ++K YL L+ G++ V Sbjct: 130 REKRNEHLELVHRLDKDTSGCLLVSKKKSKLRKLHEYFREGKVKKTYLGLMVGKFTQTVY 189 Query: 190 SVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQ 249 + PL R+ GK ++T+F + E+Y + L + P+TG+THQIR H + Sbjct: 190 EIDQPLKIITTPENGRLAVPDDSGKKAKTKFFLMEKYKNSALFKIEPITGKTHQIRAHAK 249 Query: 250 YAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFT-HPGTGEVMRIEAPMDEGL 308 Y P+A D+RYG + GL RLFLHA ++ F T ++ +D L Sbjct: 250 YMKTPLAADNRYG---IQPDQIVSEFGLTRLFLHAESITFPGLSSTENTFSFKSKLDTKL 306 Query: 309 KRCLQKLRNA 318 L+KLR+ Sbjct: 307 IEVLEKLRSE 316 >UniRef50_C0E4Q3 Pseudouridine synthase n=2 Tax=Corynebacterium matruchotii RepID=C0E4Q3_9CORY Length = 310 Score = 295 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 93/323 (28%), Positives = 144/323 (44%), Gaps = 23/323 (7%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 M ET S + + A R+D L G+ +++ + KG+V ++ K K+ Sbjct: 1 MSRETRS---LPVPEGLADMRVDVALSKLF-GLSRTVSADLATKGDVLIDGKPATKSDKI 56 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 G + + + ++ + P + V L ILY D+ ++ ++KP G A H G Sbjct: 57 TDGAWLEV----LLPEPQKPLVPTEELVDGL--EILYADEDLIAVDKPVGVAAHPTVGWD 110 Query: 121 F-GVIEGLRALR------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQ 173 V+ GL A +V RLD TSGV++VA L +E+ + Sbjct: 111 GPTVVGGLAAAGYRISTSGPPERNGIVQRLDVGTSGVMVVAASERGYSVLKRAFKERTVS 170 Query: 174 KDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVR 233 K Y ALV+G +++A + ++ V+ +GK + T ++ E + A+L+ Sbjct: 171 KTYHALVQGHMDPLAGTIEANIGRHPSSG--WKFAVTSDGKHAVTHYETLEAFVAASLLE 228 Query: 234 CSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPG 293 TGRTHQIRVH HP D YG A GLNR +LHA L F HP Sbjct: 229 VHLETGRTHQIRVHMSALHHPCCGDPMYGADPQ----LSARLGLNRQWLHAVKLGFYHPA 284 Query: 294 TGEVMRIEAPMDEGLKRCLQKLR 316 G + IE+P L+ L+ LR Sbjct: 285 DGRWLEIESPYPPDLRHALEVLR 307 >UniRef50_B7GLK3 Pseudouridine synthase n=11 Tax=Bacillaceae RepID=B7GLK3_ANOFW Length = 292 Score = 295 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 91/307 (29%), Positives = 143/307 (46%), Gaps = 25/307 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRI-LRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 +T + G + FL+ Q + K+ + I + G + VN + Y L+AGDEV + Sbjct: 6 WIVTQQQDGMLVREFLKQQ--HISKTALTDIKFQGGRIEVNDVPVTVRYVLKAGDEVCVS 63 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 + P + I+YEDD+++V+NKP + G + Sbjct: 64 FPPEQKGANMVAEP-------IPLAIVYEDDYVIVINKPPHMSTIPSREHPHGTLANALL 116 Query: 130 LRPEARFL----ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 E + L +V RLDRDTSG++LVAK R L EQ ++ +++ Y A+ G Sbjct: 117 HHYEQQQLQTTVHVVTRLDRDTSGLVLVAKHRHVHHLLSEQQKQGRVKRRYEAVCHGYVI 176 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245 V ++ AP+ + ER VR+ +G+ + T ++V ++ T V TGRTHQIR Sbjct: 177 QLVGTIDAPIGRKGDSIIEREVRL--DGQRAVTHYEVLQQKNEMTHVSIQLETGRTHQIR 234 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMD 305 VH + GHP+ DD YG ++R LH+ L F HP + M AP+ Sbjct: 235 VHFSHIGHPLVGDDLYGGLREH---------IDRQALHSCELTFFHPFFEKTMTFHAPLP 285 Query: 306 EGLKRCL 312 + + R L Sbjct: 286 DDIARLL 292 >UniRef50_C2W5F3 Pseudouridine synthase n=4 Tax=Bacillus RepID=C2W5F3_BACCE Length = 307 Score = 295 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 88/314 (28%), Positives = 159/314 (50%), Gaps = 26/314 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + + +G ID+ L+ + G+PK +++++ + + VN +R L+ GD++++ Sbjct: 12 ITVPTKWSGMSIDSLLKEEW-GIPKKLLHKLRMEKGIIVNGERKVWSEMLQEGDKLQV-- 68 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 + +EE V P + +++EDDH+L++NKP+ H + G + L A Sbjct: 69 -HMFAQEEYGVQPEYGDLE-----VIFEDDHVLIVNKPAHMDTHPSNKGGTGTLANLVAF 122 Query: 131 RPEARFL----ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 + + + +HRLD+DT+G ++ AK A + L E+ +++ YLALV G+ + Sbjct: 123 HLQMQGVETKVRHIHRLDKDTTGGVVFAKHGIAGVIMDRLLMERNIKRTYLALVEGKVRK 182 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY--AFATLVRCSPVTGRTHQI 244 + + ++ + R RVSQ+G + T +K+E+ + TLV TGRTHQI Sbjct: 183 KQGIIDEAIGRDRHHATRR--RVSQKGDRAVTHYKIEKYFKKQDVTLVTLQLETGRTHQI 240 Query: 245 RVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPM 304 RVH ++GHP+ D YG + T + LHA + F HP T E + +EAP+ Sbjct: 241 RVHMSHSGHPLIGDVLYGGQ---------ATYMPYQALHAMRIHFLHPITKEEITVEAPL 291 Query: 305 DEGLKRCLQKLRNA 318 L ++ + + Sbjct: 292 PNNLNNIIESFKMS 305 >UniRef50_C6XFC8 Ribosomal large subunit pseudouridine synthase C n=5 Tax=Rhizobiaceae RepID=C6XFC8_LIBAP Length = 346 Score = 293 bits (752), Expect = 4e-78, Method: Composition-based stats. Identities = 105/320 (32%), Positives = 169/320 (52%), Gaps = 16/320 (5%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 V+ V + DE R+D + + + + +ILR G+VRV+KKR+K ++++G VR Sbjct: 7 VQYVVVENDEENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVKFNNRIQSGQVVR 66 Query: 68 IPPVR------VAEREEEAVSPHLQKVAALADVIL-YEDDHILVLNKPSGTAVHGGSGLS 120 IPPV + E++ S +L K + IL YED I V NKP+G +V GGSG++ Sbjct: 67 IPPVINALNHIIKEQKILDSSVNLTKHSDFLKSILLYEDSKIYVFNKPAGISVQGGSGIA 126 Query: 121 FGVIEGLRALRP-EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 + + L++ + + L HRLD++TSG+L+VA+ R+A + L E R + +QK Y +L Sbjct: 127 YHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWSL 186 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGK---PSETRFKVEERYA-FATLVRCS 235 V G ++ + + LLK G+ + V Q K + + FKV + +A + Sbjct: 187 VWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQ 246 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTG 295 P TGRTHQ+RVH + G PI D +Y + + N+L+LHA + HP G Sbjct: 247 PHTGRTHQLRVHALHMGCPIVGDHKYC---ANFKGNFTSPIQNKLYLHARYMDLPHPEGG 303 Query: 296 EVMRIEAPMDEGLKRCLQKL 315 ++I AP+ + + L Sbjct: 304 R-LQITAPLPAHMVKTWDSL 322 >UniRef50_Q0BUM2 Pseudouridine synthase n=12 Tax=Acetobacteraceae RepID=Q0BUM2_GRABC Length = 366 Score = 293 bits (752), Expect = 4e-78, Method: Composition-based stats. Identities = 100/323 (30%), Positives = 153/323 (47%), Gaps = 16/323 (4%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 SV +T DEA R+D + R + + I ++ R G++RV+ R + +L+ G V Sbjct: 33 SVTTRQVTDDEADIRLDRWFRRHYPSLTQVAIQKMCRTGQIRVDGARAEAATRLQPGQSV 92 Query: 67 RIPPVRVAEREEE----AVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG 122 RIPP++V E+ + + L ILY+DDH++VLNKPSG GG G++ Sbjct: 93 RIPPLKVPSAAEQEGEGPRALDPIQQKELESWILYKDDHLIVLNKPSGLPSQGGPGITRH 152 Query: 123 VIEGLRALR-PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 + L LR LVHRLDRDTSGV+++A+ L R + +K Y A+V Sbjct: 153 LDGLLDGLRFGRDDRPRLVHRLDRDTSGVIVIARSPGVAAKLAALFRTRETEKVYWAVVA 212 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKP---SETRFKVEERYA-FATLVRCSPV 237 G+ + PLL+ E +V ++ + + T ++ + A + P+ Sbjct: 213 GRPVPVEGRIDRPLLR-QNDRNEPVVLADRKDRDKVTAITDYRTLDHAARKLAWLELRPL 271 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGL-----NRLFLHAAALKFTHP 292 TGR HQ+RVH PI D+RYG + T L RL LHA L HP Sbjct: 272 TGRMHQLRVHCAAMDAPILGDERYGSWRNTDERGVRNTALVEGLSRRLHLHARRLSLPHP 331 Query: 293 GTGEVMRIEAPMDEGLKRCLQKL 315 G ++ +EA + + + L Sbjct: 332 AGG-MLSVEADLSPHMAETFETL 353 >UniRef50_UPI0001C42CC7 hypothetical protein BpOF4_01845 n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42CC7 Length = 322 Score = 293 bits (752), Expect = 5e-78, Method: Composition-based stats. Identities = 95/304 (31%), Positives = 143/304 (47%), Gaps = 26/304 (8%) Query: 18 AGQRIDNFLRTQLKGVPKSMIYRI-LRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAER 76 G + FLR + G+ K + I + G++ VN+K + + +GD V + E Sbjct: 37 EGILLRTFLRDVI-GISKKSLADIKFKGGKILVNQKEVTVRTTIFSGDRVEVYVP--PEP 93 Query: 77 EEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAV-----HGGSGLSFGVIEGLRALR 131 + E++ P + I YEDDH+LV+NKP G H L+ V+ + Sbjct: 94 KNESLRPEC-----IPLDIHYEDDHLLVINKPQGMPTIPSREHPSRTLANAVMGYYESHH 148 Query: 132 PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSV 191 F V+RLDRDTSG+L+VAK A L + R +++ YLAL G Q ++ Sbjct: 149 IPFTF-HAVNRLDRDTSGLLVVAKHGLAHDQLSKGQRAGKLKRYYLALAEGFVQPREGTI 207 Query: 192 QAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYA 251 AP+ + ER+V +G+ + T +KV + V + TGRTHQIRVH + Sbjct: 208 HAPIKRRPSSIIERMVAA--DGQEAITHYKVINDNQAYSEVEINLETGRTHQIRVHFAHL 265 Query: 252 GHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRC 311 GHP+ DD YG + L R LH ++ HP TG+ + AP+ + L Sbjct: 266 GHPLLGDDLYGG---------SIELLARQALHCQRVELIHPFTGKHLHFSAPLPKDLIEV 316 Query: 312 LQKL 315 KL Sbjct: 317 KDKL 320 >UniRef50_Q6MGX8 Pseudouridine synthase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MGX8_BDEBA Length = 319 Score = 293 bits (751), Expect = 6e-78, Method: Composition-based stats. Identities = 90/323 (27%), Positives = 145/323 (44%), Gaps = 33/323 (10%) Query: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAERE 77 +G R+D + + +S +L V +N K K ++ D + I ++ E E Sbjct: 2 SGLRLDKAMALIPEIGTRSRASHLLESNSVLLNGKPAKASVAIKENDLIEI---QLPEPE 58 Query: 78 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR------ 131 + P L +L+ED+ ++V+NKP+G VH +G + + Sbjct: 59 PTELQPF-----DLKLDVLFEDEDLIVINKPAGLVVHPAAGHAHDTLVNALIHHTDDLSM 113 Query: 132 -PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKS 190 +VHRLD++TSG++++AK A SL Q +E+ + Y A+ G ++ S Sbjct: 114 KFGEERPGIVHRLDKETSGIIVIAKNDKAHESLTSQFKERSTHRIYYAVCLGTARTLSGS 173 Query: 191 VQAPLLKNILQSGERIVRVSQE-------------GKPSETRFKVEERYAFATLVRCSPV 237 V++ L ++ + + + GK + T F+V +R + + ++ Sbjct: 174 VRSFLARHPVDRKRYASVLGDDRKPLTDPNDDPGLGKWAVTHFEVLQRKSGMSYLKLKLE 233 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYG-DREFD----RQLTEAGTGLNRLFLHAAALKFTHP 292 TGRTHQIRVH +G PIA D YG DR+ R E L R LHAA L FTHP Sbjct: 234 TGRTHQIRVHMSESGLPIAGDTLYGADRKIKSIEARATQEDLRTLPRFLLHAAELGFTHP 293 Query: 293 GTGEVMRIEAPMDEGLKRCLQKL 315 T E M E + ++K Sbjct: 294 RTKERMFFTKDWPEDVLVLIKKW 316 >UniRef50_Q057L6 Pseudouridine synthase n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057L6_BUCCC Length = 317 Score = 292 bits (749), Expect = 1e-77, Method: Composition-based stats. Identities = 130/296 (43%), Positives = 191/296 (64%), Gaps = 3/296 (1%) Query: 20 QRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEE 79 QRIDNFL K +PKSMIYR LR G++++NKK++ P YKL+ D + + + E +++ Sbjct: 20 QRIDNFLFKTFKKLPKSMIYRSLRIGKIKINKKKVHPYYKLKINDNITFFSINI-ETKKK 78 Query: 80 AVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLEL 139 ++ + IL+ED+ +++ NKP G AVHGGSG+S+GVIE R +R + +FLEL Sbjct: 79 KINLSKSIIQLFIKNILFEDNDLIIFNKPYGFAVHGGSGISYGVIEIFRKIRSDLKFLEL 138 Query: 140 VHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNI 199 VHR+D++TSG+L+++KKRS L+ +H LREK + K+YLA++ G W K V+ PLLK Sbjct: 139 VHRIDKETSGILILSKKRSILKKMHINLREKKIYKEYLAILHGYWSKKNKIVKLPLLKKK 198 Query: 200 LQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDD 259 ++ V V +EGK ++T F++++ TLV+ P+TGRTHQIRVHT GHPI FD+ Sbjct: 199 NIKQKKKVCVHKEGKLAQTNFEIKKYLNNKTLVKIIPITGRTHQIRVHTAQFGHPIVFDN 258 Query: 260 RYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 RYG E ++ +RL LHA + F HP E I AP+D+ + CL+ Sbjct: 259 RYGKIEKKKKKIIKKN--SRLLLHAFKVSFLHPRNNENFSITAPLDKKFQNCLKYF 312 >UniRef50_Q14NK8 Probable pseudouridine synthase d protein n=1 Tax=Spiroplasma citri RepID=Q14NK8_SPICI Length = 306 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 88/307 (28%), Positives = 144/307 (46%), Gaps = 27/307 (8%) Query: 21 RIDNFLRTQLKG----VPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAER 76 RID L K ++ I ++++ +V+VN + ++ Y + GD V I Sbjct: 13 RIDKILTDYFKTNTTPFSRTKIQELIKQEKVQVNGQVVRANYVSQIGDHVIIEFPSAKAS 72 Query: 77 EEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRP---- 132 E + A+ ILYED +++V++KP+ VH G + R Sbjct: 73 ELTPL--------AIPLTILYEDSYLMVIDKPNNLVVHPAPGHQNDTLVNALLARGVQWS 124 Query: 133 ---EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVK 189 + +VHR+DR T+G L++AK L +Q++ K +Q+ YLALV GQ + Sbjct: 125 TASGEQRPGIVHRIDRQTTGTLIIAKNDVVHHQLQQQIQTKQLQRRYLALVHGQIIENRA 184 Query: 190 SVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQ 249 + AP+ ++ +++V ++ K + T V ER+ T + C +GRTHQIR H + Sbjct: 185 KIDAPIGRDPNNR-KKMVVTAKNSKKALTNIVVIERFNDYTYIECELESGRTHQIRAHLK 243 Query: 250 YAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLK 309 Y HPI D YG ++ +LHA L+F HP T E + I A + + + Sbjct: 244 YINHPIVGDPLYGTVADKKESF-------GQYLHAYQLRFIHPVTKESLTITAALPQEFE 296 Query: 310 RCLQKLR 316 + L LR Sbjct: 297 QRLAILR 303 >UniRef50_Q1D114 Pseudouridine synthase, RluA family n=6 Tax=Cystobacterineae RepID=Q1D114_MYXXD Length = 306 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 97/315 (30%), Positives = 147/315 (46%), Gaps = 17/315 (5%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 + V + + AG+R+D FL Q+ G+ ++ G VR+ KR +P KL G+E+ + Sbjct: 4 QKVQVPREAAGERLDRFLSKQVPGINLERARALIDSGAVRIRGKRCQPTRKLWGGEEIEL 63 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 E + + +L++D ++++NKP G V G + V+ L Sbjct: 64 -------ERPEPRAASVAASEGPVLPVLHDDSALVIVNKPPGIVVEP-EGRAASVVGLLA 115 Query: 129 ALRP-----EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 A RP +VHRLDR+TSG L A+ +A +L +EK + K Y LV GQ Sbjct: 116 AQRPPFDVEGLAQPGVVHRLDRETSGCLAFARTDTAAAALLRSFQEKRVDKRYWTLVLGQ 175 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 + ++ P ++ RV + + F+V ER+A A L+ TGRTHQ Sbjct: 176 PPA-QGRLEGPYARDPADPRRFTTRV-PSARRAALSFEVRERFADAALLEVDLDTGRTHQ 233 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 +RV AG P+ D YG E G R LHA L+ P TG+ +R+EAP Sbjct: 234 VRVQLSEAGFPVLADSLYGPPEARAHAAARALG--RQALHAFTLELPSPATGQPVRVEAP 291 Query: 304 MDEGLKRCLQKLRNA 318 + E +R L LR Sbjct: 292 LPEDFQRALTVLRGG 306 >UniRef50_B1H0R5 Pseudouridine synthase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0R5_UNCTG Length = 296 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 89/308 (28%), Positives = 146/308 (47%), Gaps = 17/308 (5%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 ++ I +R D++L + K +S ++ + V VN K I +KL+ GD + Sbjct: 1 MQEKIIYEKFERERADSYLASIYKDYSRSYFQKLTDRQRVFVNDKIIPVSHKLKRGDIIT 60 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EG 126 I + + + + + + D++ V+NK SG VH G G + Sbjct: 61 IEFEKEEKFQIKPEKIKIDIIYEDDDIV--------VVNKRSGIVVHPSYGHLSGTLLNA 112 Query: 127 LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 L L+HRLD+DTSGV++ AK A S+ +QL+++ ++K Y A V+G Sbjct: 113 LMGYSAGKYNPYLIHRLDKDTSGVIVFAKTEKAKISISKQLQKRVVKKIYYAAVKGVIAE 172 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKP-SETRFKVEERYAFATLVRCSPVTGRTHQIR 245 + ++APL ++ ++V V+ K + T FKV ER TL++ +TGRTHQIR Sbjct: 173 NRGIIKAPLGRSP--KNRKLVSVNPLAKKVAITEFKVIERKDDYTLLKVRIITGRTHQIR 230 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMD 305 H +Y HP+ D +YG T R LHA + FTHP T + ++ A + Sbjct: 231 SHMKYINHPVIGDKQYGGPG-----TIGLKRCERQMLHAHNITFTHPSTSKTVKFIAQLP 285 Query: 306 EGLKRCLQ 313 +K + Sbjct: 286 NDMKAIFK 293 >UniRef50_D0XS67 Pseudouridine synthase n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XS67_9CAUL Length = 350 Score = 291 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 100/313 (31%), Positives = 154/313 (49%), Gaps = 12/313 (3%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 +I+ + E G R+D + R + + + ++ R G++RV+ RIKPE +L AG VR+ Sbjct: 25 QILYVAEAEDGIRLDRWFRRRWPHLSNIQVQKMARGGQIRVDGARIKPEGRLTAGAAVRV 84 Query: 69 PPVRVA--EREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 PP+ E ++ +A +++YEDD ++ LNKP G AV GG+ + V Sbjct: 85 PPIPEPIVRAPGEHMALTPADIAFAKSMVIYEDDLVIALNKPWGLAVQGGTKTTRHVDRL 144 Query: 127 LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 L A LVHRLDRDTSGVLL+ K A + L + +K Y A+V G + Sbjct: 145 LSAWGEGMERPRLVHRLDRDTSGVLLLGKGPEAAKRLAGAFARRQAKKTYWAIVMGLPKP 204 Query: 187 HVKSVQAPLLKNILQSGERIVRV---SQEGKPSETRFKVEERYAF-ATLVRCSPVTGRTH 242 + L K+ + E + +P+ET + V A A+ + P TGRTH Sbjct: 205 ADGQISVHLKKSGINDYEIMRPADPKDPGAEPAETAYAVISHAAQRASWMALRPFTGRTH 264 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 Q+R H + GHPI D +YGD + +G +L LHA ++ HP G + +EA Sbjct: 265 QLRAHMKAIGHPILGDPKYGD-----DASTQLSGPLKLQLHARRIELDHPAGG-TLVVEA 318 Query: 303 PMDEGLKRCLQKL 315 P+ L+ + Sbjct: 319 PISAELRAGFEHF 331 >UniRef50_D1Y726 Ribosomal large subunit pseudouridine synthase D n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y726_9BACT Length = 315 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 98/316 (31%), Positives = 148/316 (46%), Gaps = 25/316 (7%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP- 69 I+ + G+R+D+ LR GVP + + RKG VR+ KR +P ++ G V +P Sbjct: 5 FQISRHDEGRRLDSVLRGMWPGVPLGAMMKYFRKGAVRLEGKRCQPNDRVLEGQHVWVPW 64 Query: 70 --PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 P V E +P L ++Y D ++V+NKP+G V+ Sbjct: 65 EEPGTVGRAEMPDGTPR-----RLPLDVIYSDRCVMVVNKPAGLLSQPDVKGEDSVVTRA 119 Query: 128 RALRPEARFLE-LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 + F LVHRLDR+TSGV+ +A R+L E + + K Y A+V G+ Sbjct: 120 LGYAVDPEFPPQLVHRLDRNTSGVMALALDGPTTRALMECFKARRADKRYWAIVIGELPE 179 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 + PLLK+ +++VRV +G+ + T +K +L +TGRTHQIRV Sbjct: 180 R-GRIDVPLLKDA---DKKLVRVDPKGERAVTEYKRLTSSGAFSLAEVHLLTGRTHQIRV 235 Query: 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFT-------HPGTGEVMR 299 H + GHP+ D +YGD QL G+ R LHA +L H G+ Sbjct: 236 HMNHVGHPLLGDVKYGDFGSKGQLR--SLGVKRPMLHARSLTLNGLPAFLSH-LEGK--T 290 Query: 300 IEAPMDEGLKRCLQKL 315 AP + L+R ++KL Sbjct: 291 FRAPAPDDLRRVMEKL 306 >UniRef50_A6TSZ4 Pseudouridine synthase n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSZ4_ALKMQ Length = 308 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 81/313 (25%), Positives = 143/313 (45%), Gaps = 24/313 (7%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 + A++ Q + L+ +L + ++ ++ + + +N + K L GD ++I Sbjct: 13 TYEVEAEDDQQPLKETLKNRL-DLSSRLLTKLKKSKRILINGQYAKYHELLSEGDWIKID 71 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 A + E + ++YED ++V+NK G H I Sbjct: 72 MTEEASQFEPQ---------EIPFNVVYEDIDVIVINKEPGIVSHPTKSHPKDTIANAAQ 122 Query: 130 LRPEARF----LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 E + + V+RLD DTSG+L++AK + +Q++ + K Y+A V+G Sbjct: 123 NYLEKKGVACRIRFVNRLDMDTSGLLVIAKNPYTHHIMSQQMKANEITKKYVAFVKGVVV 182 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245 ++ + + ++ ++ +R+ V G+ S T+F V ERYA AT++ S +TGRTHQIR Sbjct: 183 ANEGEIDGAIYRSSDETIKRV--VDDRGQQSLTKFTVLERYADATMLEVSLLTGRTHQIR 240 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMD 305 VH + GHP+ D YG + R LHA+ L F P E + + A + Sbjct: 241 VHMESIGHPMLGDHLYG--------YVDTELIRRQALHASYLSFLQPRYKEKIEVRASLP 292 Query: 306 EGLKRCLQKLRNA 318 + L KL++ Sbjct: 293 KDLNELRNKLKDE 305 >UniRef50_A8Z5T0 Pseudouridine synthase n=3 Tax=Candidatus Sulcia muelleri RepID=A8Z5T0_SULMW Length = 337 Score = 290 bits (744), Expect = 4e-77, Method: Composition-based stats. Identities = 92/306 (30%), Positives = 158/306 (51%), Gaps = 19/306 (6%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEA 80 RID +L+ L ++ I +I+ KG V VN IK Y ++ D + I ++ Sbjct: 38 RIDTYLKFILHKKNRNFIQKIIEKGFVYVNNILIKKNYIVKINDVIEI----FLPEGKKN 93 Query: 81 VSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGL-SFGVIEGLRALRPEARFLE- 138 + P L I YED++++++NK SG VH G G S +I GL + + + Sbjct: 94 IIPE-----NLKINIFYEDEYVIIINKQSGLVVHPGKGNESMTLINGLHFYFLKKKNIYN 148 Query: 139 ----LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAP 194 LVHR+D+ TSG++LVAK ++ L +++Q +++ Y+ LV G +++ ++ Sbjct: 149 KIPILVHRIDKGTSGLILVAKDKNILEKIYKQFYINHIKRKYITLVWGYIKNNKGTIICN 208 Query: 195 LLKNILQSGERIVRVSQ-EGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGH 253 + +++ V + GK S T +KV ER+ + TL++C+ TGRTHQIRVH +Y GH Sbjct: 209 IGRSLKNRIYMNVFPNGIYGKFSITHYKVLERFKYVTLLKCTLETGRTHQIRVHLKYIGH 268 Query: 254 PIAFDDRYGDR---EFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKR 310 PI D YG + + + + + LHA +++ HP + P+ + +K Sbjct: 269 PILNDKDYGGNHTFKEKKNIKKLFINMKYQALHAYYIEYIHPIYRKKNYFICPIPDRIKF 328 Query: 311 CLQKLR 316 ++ LR Sbjct: 329 LIKNLR 334 >UniRef50_A4J9H9 Pseudouridine synthase n=2 Tax=Clostridiales RepID=A4J9H9_DESRM Length = 320 Score = 290 bits (744), Expect = 4e-77, Method: Composition-based stats. Identities = 85/306 (27%), Positives = 145/306 (47%), Gaps = 24/306 (7%) Query: 12 AITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPV 71 I+ + G ++N+L+ L I ++ R+ + +N K + + KL A D + I + Sbjct: 30 KISQEHEGFTVENYLKNIL-QYSGRKIQKLTRRKGILLNGKTVYLQKKLNAEDTLSILDL 88 Query: 72 RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR 131 E V P + +LYEDD +LVLNKP+ VH + G + A Sbjct: 89 ---EDTNYGVQPEKGAIE-----VLYEDDFLLVLNKPAHQLVHPTGQTTRGTMANYLAYY 140 Query: 132 PEARF----LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 + R + VHRLDR+TSG ++ AK + L +QL+E+ +++ Y ALV+G Sbjct: 141 LKQRNVVSAIRPVHRLDRETSGCVIFAKDSRSQFILEQQLKERTLKRTYWALVKGIVHPP 200 Query: 188 VKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVH 247 ++ AP+ + + R +++ G+ S T ++ + +L++ + TGRTHQIR+H Sbjct: 201 SGTIDAPIGPHPSLANRR--AINEHGEQSITHYQTLRSFPEISLLKLNLDTGRTHQIRLH 258 Query: 248 TQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEG 307 + G+PI D YG R +NR LHA + F H + + AP+ Sbjct: 259 LAHLGYPIIGDRMYGVR---------SPWINRQALHAYDVSFRHLKENHEIAVHAPLPTD 309 Query: 308 LKRCLQ 313 + + Sbjct: 310 FAQAIN 315 >UniRef50_Q2GGY1 Pseudouridine synthase n=13 Tax=Rickettsiales RepID=Q2GGY1_EHRCR Length = 337 Score = 290 bits (744), Expect = 4e-77, Method: Composition-based stats. Identities = 78/328 (23%), Positives = 160/328 (48%), Gaps = 30/328 (9%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDE-- 65 K + I + + R+D F+ ++L + ++ + ++++ ++ + I+ + + D Sbjct: 18 KKIFIKSGDENNRLDKFIASKL-NISRNQVQQLIKDSKILLFDTIIRDNNHITKVNDIYN 76 Query: 66 VRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI- 124 + IP + +S + + ++YED I+++NK G VH G+G + + Sbjct: 77 ISIP--------IKTISDTITPNHYIPISVVYEDHDIIIINKAPGITVHPGAGTNNNTLV 128 Query: 125 EGLRALRP-------EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 L A +A ++HRLD+DTSG++++AK + L + L +K ++K+YL Sbjct: 129 NALVAHYGNSLSHVGKATRPGIIHRLDKDTSGLMVIAKNEKSYYFLSDLLLKKQIKKEYL 188 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVS---QEGKPSETRFKVEERYAF-ATLVR 233 A+V G +++ + + ++++ V+ +GK + T ++ ++ ++ A+L++ Sbjct: 189 AVVWGLPNPKSNTIKNYICVKP--NNKQMMTVTHLPHKGKLAITEYQTQKSFSNIASLIK 246 Query: 234 CSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFD----RQLTEAGTGLNRLFLHAAALKF 289 C TGRTHQIRVH Y G+ I D +YG + + L R LHA L F Sbjct: 247 CRIHTGRTHQIRVHMSYIGNSIIGDQKYGKNNSKSVKYAKQSTIINTLKRQALHAYKLGF 306 Query: 290 THPGTGEVMRIEAPMDEGLKRCLQKLRN 317 THP + + + + ++ + +L Sbjct: 307 THPTSNTYIEFHSYIPNDIQMLIDELEQ 334 >UniRef50_C4XFS9 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=C4XFS9_MYCFE Length = 315 Score = 290 bits (744), Expect = 4e-77, Method: Composition-based stats. Identities = 88/303 (29%), Positives = 146/303 (48%), Gaps = 35/303 (11%) Query: 20 QRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI--KPEYKLEAGDEVRIPPVRVAERE 77 +RID ++ Q + ++ I ++ +G V +N K Y + G E+ I + E + Sbjct: 18 ERIDKYI-GQNSELSRNDIKELIEQGAVYINDNVQVHKCNYIVREGQEITIVKLLNKEIK 76 Query: 78 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGL-SFGVIEGLRALRPEAR- 135 E V+ + I YEDD ++++NKPS VH G + ++ GL Sbjct: 77 IEPVN--------IPLDIKYEDDDLVIINKPSNLVVHPSPGHYNDTLVNGLLYHFKNNLS 128 Query: 136 ------FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVK 189 +VHR+D+DTSG+L++AK SL + L+ +++ YLA+VRG ++ + Sbjct: 129 NENGLLRPGIVHRIDKDTSGLLIIAKNNKMHNSLTDMLKRHEIERSYLAIVRGLIENPLT 188 Query: 190 SVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY----AFATLVRCSPVTGRTHQIR 245 + P+ +N + +++ V +EGK + T + + + +LVRC TGRTHQIR Sbjct: 189 KINLPIARNTVD--RKMMSVHKEGKEAITFVHLLKHFYLDKEPMSLVRCELKTGRTHQIR 246 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMD 305 VH Y HP+ D YG + LHA LKF HP T + + + AP+ Sbjct: 247 VHLSYIKHPVYGDPTYGKSVDEFN----------QRLHAYKLKFIHPLTKKEICVYAPVP 296 Query: 306 EGL 308 + Sbjct: 297 KEF 299 >UniRef50_C1CWT3 Pseudouridine synthase n=1 Tax=Deinococcus deserti VCD115 RepID=C1CWT3_DEIDV Length = 321 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 93/316 (29%), Positives = 143/316 (45%), Gaps = 37/316 (11%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPVRVAEREEE 79 R+D L L G +S + + G V+V + + K KL G+ + + P + + E Sbjct: 13 RLDAVLAA-LSGASRSQVAAWIAGGHVKVEGQPVTKVSLKLRGGERIDVSPPALPDARVE 71 Query: 80 AVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRALRP------ 132 A L ++YEDD+++ +NKP G H G+ G + L P Sbjct: 72 A--------EDLPLDVIYEDDYLIAVNKPPGMVTHPAPGVLSGTLVNALLGRMPLPEQPD 123 Query: 133 ----EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHV 188 +VHRLD+DTSGV++VAK A L +++ +K YLA+ GQW++ Sbjct: 124 YDSEAGYRPGIVHRLDKDTSGVIVVAKTVGAHARLAAAFKDRETRKTYLAIAAGQWRADG 183 Query: 189 -KSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF-----ATLVRCSPVTGRTH 242 V+AP+ ++ +Q +R+ + ++T F + LVR P TGRTH Sbjct: 184 PARVEAPIGRHPVQR-QRMTVGGANPREAQTLFTPLAAHPDGHGRTLALVRAQPRTGRTH 242 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH + G PI D YG + + R LHA L HPGTG ++ + A Sbjct: 243 QIRVHLAHLGSPILGDAVYG---------RSSETMLRHALHAHFLSVPHPGTGRLLHLHA 293 Query: 303 PMDEGLKRCLQKLRNA 318 P + + L A Sbjct: 294 PAPDDMLNAWIALGGA 309 >UniRef50_D0LU78 Pseudouridine synthase n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LU78_HALO1 Length = 369 Score = 288 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 98/328 (29%), Positives = 149/328 (45%), Gaps = 32/328 (9%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 V+ + D AG R+D++L+ Q+ + ++ + ++R V +++KP + +GD + Sbjct: 34 VRRFVVDEDSAGFRLDHYLKRQIPRLSRTKLQDVIRHQLEPVRGRQLKPSASVHSGDVI- 92 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 V R P + + +LY D H+LV++KP+G VH + F + + Sbjct: 93 -----VMSRRARPEPPCPRTIG-----VLYSDPHMLVIDKPAGLPVHASARFYFNTLTRV 142 Query: 128 RALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 R + +++ HRLDR+TSG L+VA+ + L +K K YLALV G Sbjct: 143 LGERFPGQPMQICHRLDRETSGALVVARGKPEAARLKGAFADKRAHKTYLALVWGDPPWP 202 Query: 188 VK----------SVQAPLL--KNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCS 235 + PL + + + V PS TR +V ER A LVRC Sbjct: 203 DGAWDSAPEDDAIIDLPLGLVADESARIKIRMEVRAGALPSLTRVRVLERRGRAALVRCL 262 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRY--GDREFDRQLTEAGTG-------LNRLFLHAAA 286 P+TGR HQIR H GHPI D Y GD F T L R LHAAA Sbjct: 263 PLTGRQHQIRAHLAACGHPIVGDKLYAHGDDVFAAYCDRGMTPELLERVRLPRQALHAAA 322 Query: 287 LKFTHPGTGEVMRIEAPMDEGLKRCLQK 314 + HP G +R E+P+ ++ L + Sbjct: 323 IALPHPFEGRQVRAESPLPADMRAFLDR 350 >UniRef50_B8CWB7 Pseudouridine synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWB7_HALOH Length = 310 Score = 288 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 88/308 (28%), Positives = 149/308 (48%), Gaps = 24/308 (7%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEY-KLEAGDEVRIPPV 71 I+ +EAG + FL+ +LK + + I ++ R+ +R+N + +K KL +GD + Sbjct: 21 ISDEEAGVTLYTFLKNRLK-MSRKFIRKMGREYRIRLNCRYVKFTEVKLNSGDLIEFNLN 79 Query: 72 RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG--LRA 129 + A L I+YED H+LV+NKP+ VH I L Sbjct: 80 FKEKT--------YYDPAPLDLDIIYEDRHLLVINKPANMLVHPTPVEKSNTIVNGVLYH 131 Query: 130 LRPEARF--LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 +R + + + +HRLDR+T+G+LL+AK + A + Q + + ++YLA V G + Sbjct: 132 MRNQGNYNLVRPIHRLDRNTTGLLLIAKNQYAHNYITHQFQNNNIHREYLAFVHGNVEFK 191 Query: 188 VKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVH 247 +S+ AP+ K +R V + GK + T KV + +L+R TGRTHQIRVH Sbjct: 192 KESINAPIGKTRDSLIKRKVDHTL-GKRAVTHIKVVKPGGLISLIRVKLETGRTHQIRVH 250 Query: 248 TQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEG 307 + GHP+ D YG + + R LH+ + P + + +AP+ Sbjct: 251 LSHLGHPLLGDTLYGGEDI---------LIKRPALHSYKVTCCLPFKHKEVTFKAPLPVD 301 Query: 308 LKRCLQKL 315 +++ ++L Sbjct: 302 MEKLKKQL 309 >UniRef50_A5ZUU7 Pseudouridine synthase n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZUU7_9FIRM Length = 293 Score = 288 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 88/307 (28%), Positives = 137/307 (44%), Gaps = 25/307 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVR-VNKKRIKPEYKLEAGDEVRIP 69 I+A + G + +FLR Q G + ++ + E +N ++ L GD R+ Sbjct: 7 YTISAADEGMIVLDFLRKQ--GFSRHILTAMKADREALSLNGQKAGGRTVLSCGDHFRVR 64 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG--- 126 + E V L +LYED+ ILV+NKP+ VH G + Sbjct: 65 LL-------ETVPADGILPTPLNIPVLYEDEDILVVNKPADMPVHPSLGNYTNTLANGVA 117 Query: 127 -LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 + E+ ++RLDRDTSG L++AK + L Q+R + + + YLA+V G + Sbjct: 118 AYLETKGESCPFRCINRLDRDTSGALILAKNALSAAILSVQMRNRQISRTYLAVVEGIPR 177 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245 ++ AP+ + ER + + G+ + T +++ E +L+ TGRTHQIR Sbjct: 178 Q-SGTISAPISRAADSVIERRIDF-ENGESAITHYQLLEVKNNHSLLEIHLETGRTHQIR 235 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMD 305 VH Y GHP+ D Y R LH+ LKF HP TG M + AP+ Sbjct: 236 VHMGYIGHPLPADYLY---------NPVYDTFKRQPLHSLQLKFCHPITGTPMCLMAPVP 286 Query: 306 EGLKRCL 312 E + Sbjct: 287 EDMSNAF 293 >UniRef50_A4J1I1 Pseudouridine synthase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1I1_DESRM Length = 303 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 88/315 (27%), Positives = 153/315 (48%), Gaps = 26/315 (8%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 ++ + A + G+ + +FL+ K + + ++ +GE+ N ++ + GD+V + Sbjct: 9 VLCVEASQNGKFLRDFLKH--KDISDRALKKLRNEGEILCNGAKVTWRTIVNTGDKVVL- 65 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHG-----GSGLSFGVI 124 + + + P L I+ ED+ I ++NK G VH L+ G++ Sbjct: 66 -IYPIPPRNQYLPPE-----PLDLSIISEDEDIALVNKQPGMCVHPTLAYPSGTLANGLV 119 Query: 125 EGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQW 184 P A V+R+DR+TSG++LVAK + + L Q + K + + Y+ALV G+ Sbjct: 120 YHWLENNP-APTFHAVNRIDRNTSGLVLVAKNSYSAQKLFLQRKRKQLARSYVALVHGKI 178 Query: 185 QSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQI 244 + PL K ++ +R ++S G+ + TRF+V + TL+R P TGRTHQI Sbjct: 179 VQRNGYIDLPLEKCEGKTTKR--QISSTGQQALTRFEVLQYITDCTLIRLMPETGRTHQI 236 Query: 245 RVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPM 304 RVH + GHP+ D YG + + R LHA + F HP TG M + P+ Sbjct: 237 RVHLSHLGHPLVGDTLYGG---------SIAQIGRHCLHADKISFLHPRTGHPMSFQIPL 287 Query: 305 DEGLKRCLQKLRNAR 319 E + + + ++ A+ Sbjct: 288 AEDMLQVITEMGRAK 302 >UniRef50_D2LES8 Pseudouridine synthase, RluA family n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LES8_RHOVA Length = 326 Score = 286 bits (733), Expect = 6e-76, Method: Composition-based stats. Identities = 105/331 (31%), Positives = 160/331 (48%), Gaps = 30/331 (9%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 M E +V+ D+ G R+D +L+ +P +++ +++R G+VRV+ R+K + +L Sbjct: 1 MTIEKRAVRT-----DDDGLRLDRWLKKNYPTLPHTLVQKLVRTGQVRVDGGRVKADSRL 55 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAAL--------ADVILYEDDHILVLNKPSGTA 112 G EVR+P E A P L+ L +I++E+D + +LNKP G A Sbjct: 56 STGQEVRVP--THFAEPENAPQPSLKPPPGLSKADRDFIERMIVFENDEMFILNKPFGIA 113 Query: 113 VHGGSGLS---FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRE 169 V GG+ + G++ G+ A R LVHRLDRDT+G+L VAK R L + Sbjct: 114 VQGGTKTTRHIDGLLAGM-ADRFGGERPRLVHRLDRDTTGILAVAKDRQTAARLGRLFQT 172 Query: 170 KGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQE----GKPSETRFKVEER 225 + +QK Y A+ RG + V+A L+K G+R+ + + + T + V +R Sbjct: 173 RSVQKIYWAITRGIPKPTQGKVEAALVKASGPDGDRVRKARPGEQELAQHATTFYSVIDR 232 Query: 226 YAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNR-LFLHA 284 A V PVTGR HQ+R H G PI D +YGD + R L LHA Sbjct: 233 AANMAWVSLKPVTGRQHQLRAHMDILGTPILGDQKYGDGT-----EIPIENIERKLHLHA 287 Query: 285 AALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 L P GE + I AP+ + + + L Sbjct: 288 RRLTLKDPKLGE-IDISAPLPSHIAQTFELL 317 >UniRef50_D2ELJ1 Pseudouridine synthase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2ELJ1_PEDAC Length = 301 Score = 286 bits (733), Expect = 7e-76, Method: Composition-based stats. Identities = 87/305 (28%), Positives = 151/305 (49%), Gaps = 23/305 (7%) Query: 16 DEAGQRIDNFLRTQLKGVPKSMIYRI-LRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVA 74 DE+ Q + FL K + ++++ I G++ VN++ + + AGD+V + Sbjct: 9 DESPQHLRTFLTR--KRISRALLKSIKFNGGKILVNEQPKRTNEMVTAGDQVTV------ 60 Query: 75 EREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTA-VHGGSGLSFGVIEGLRALR-- 131 E E +PH+ + ++YED LV+NKP V + ++ ++ Sbjct: 61 ELPPEPGNPHVVRSRQ-PIDVIYEDQDYLVVNKPPFLPTVQSARNQTDTLVNRVKNYYAE 119 Query: 132 --PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVK 189 E++ + +V RLD+DTSG++L AK+R A + + LR+ +QK YLA+ G++ Sbjct: 120 RDYESQVVHVVTRLDQDTSGLVLFAKRRFAHTIMDQDLRQHRVQKYYLAMATGRFAQSHG 179 Query: 190 SVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQ 249 + AP+ ++ +R V + GKPS+T + V E+ +L++ TGRTHQIRVH Sbjct: 180 LIDAPIERDPASFIKRRVASAGNGKPSKTEYWVLEQTDTDSLLKVQLHTGRTHQIRVHFS 239 Query: 250 YAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLK 309 HP+ D Y + F L R LH +LKF + G+ + ++AP+ + Sbjct: 240 ELHHPLIGDPLYNETSF--------RSLQRQALHCFSLKFENVFRGKKIDVQAPIPNDML 291 Query: 310 RCLQK 314 +K Sbjct: 292 EYWKK 296 >UniRef50_UPI0001C37137 ribosomal large subunit pseudouridine synthase D n=1 Tax=Chlamydia muridarum Nigg RepID=UPI0001C37137 Length = 338 Score = 286 bits (733), Expect = 7e-76, Method: Composition-based stats. Identities = 89/323 (27%), Positives = 141/323 (43%), Gaps = 28/323 (8%) Query: 5 TPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKR-IKPEYKLEAG 63 P + G R+D L ++ + + G VRVN + + Y L G Sbjct: 11 FPPTDSFVVDERLIG-RLDKGLVLHNNAYSRAFYQQQIDLGRVRVNGRVQTRASYLLSQG 69 Query: 64 DEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV 123 D V + V E +P + +YED+ ILV+NKP VH G G Sbjct: 70 DLVDLELV-------EEETPSSLTPENIPLDKVYEDNMILVINKPRNMVVHPAPGHVQGT 122 Query: 124 I---------EGLRALRPEARF-LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQ 173 + E L+ PE + +VHRLD+DTSG+L+ K R A E K M+ Sbjct: 123 VVHALLHEIGERLKQEFPEEPWRPGIVHRLDKDTSGLLITVKTRRAKAVYSELFSSKQMK 182 Query: 174 KDYLALVRGQWQSHVKSVQAPLLKNILQSGERIV--RVSQEGKPSETRFKVEERYAFATL 231 K Y+A+ + + ++ ++ E V + ++ GK + T V ++ Sbjct: 183 KMYIAICINSPAQKH--IHTRIARHPVKRKEMTVLSKDTEGGKEAITHCHVLASNGRLSV 240 Query: 232 VRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTH 291 V P TGRTHQ+RVH ++ G PI D YG + + GL++ LHA +L FTH Sbjct: 241 VALYPETGRTHQLRVHMKHLGTPILGDPVYGVPSINFRY-----GLDKQQLHAYSLVFTH 295 Query: 292 PGTGEVMRIEAPMDEGLKRCLQK 314 P + E + + + + + ++K Sbjct: 296 PESAERVELVTKLPDDMTSLIEK 318 >UniRef50_C6LL16 Pseudouridine synthase n=3 Tax=Clostridiales RepID=C6LL16_9FIRM Length = 313 Score = 285 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 90/310 (29%), Positives = 140/310 (45%), Gaps = 25/310 (8%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILR-KGEVRVNKKRIKPEYK 59 M+ + I + G+ FLR KG + ++ + + +G + N RI + Sbjct: 1 MEKCMKRILNYQIEKEWEGESAAAFLRA--KGFSRHILTHLKQTEGGICRNGSRIWLSER 58 Query: 60 LEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGL 119 L GD + + + ER E + P + I+YED+ +LV++KP+ VH Sbjct: 59 LHFGDVLTV--TFLEERSSENIVP-----VPMKLDIVYEDEDLLVIDKPADMPVHPSIHN 111 Query: 120 SFGVIEGLRALRPEARF----LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKD 175 + A E+R + RLDRDT+G+LLVAK + L E + + + ++ Sbjct: 112 FDNTLANGLAYYYESRGEAFVYRCITRLDRDTTGLLLVAKNMLSGAFLAEMGKRREIHRE 171 Query: 176 YLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCS 235 YLA+V G+ +V AP+ + ER V Q G+ + T ++ E +LVR Sbjct: 172 YLAIVTGK-TEAEGTVDAPIARVEGSVLERCVDF-QRGERAVTHYRTLEYRDGYSLVRLK 229 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTG 295 TGRTHQIRVH +Y GHP+ D Y ++ LH+ L F HP TG Sbjct: 230 LETGRTHQIRVHMKYIGHPLTGDFLY---------NPDYRLMDHQALHSHYLAFRHPITG 280 Query: 296 EVMRIEAPMD 305 E M + Sbjct: 281 ERMEFTSQPP 290 >UniRef50_A3ZV48 Pseudouridine synthase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZV48_9PLAN Length = 281 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 96/285 (33%), Positives = 143/285 (50%), Gaps = 21/285 (7%) Query: 48 RVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNK 107 ++ + KP +KL AG+++ + P+ E+ V+ HL I+Y+DD I V+NK Sbjct: 2 TIDGEPCKPAHKLSAGEQLIVKPIAAYSDEQIGVNVHL--------DIIYQDDRIAVINK 53 Query: 108 PSGTAVHGGSGLSFGVI-EGLRALRPE------ARFLELVHRLDRDTSGVLLVAKKRSAL 160 P+G H G G + EGL+ P+ +VHRLDRDTSGV+++AK +A Sbjct: 54 PAGMITHPAKGHWKGTLTEGLKGQFPQLSTIGGPTRPGIVHRLDRDTSGVIVIAKDDAAH 113 Query: 161 RSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVR-VSQEGKPSETR 219 L Q +++ +K+Y A+V G + P+ + +R EGK ++T Sbjct: 114 EFLKTQFQDRLTEKEYFAMVIGAPDRDRDLINEPVGPHPKIRERMAIRRGDDEGKDAQTF 173 Query: 220 FKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREF-----DRQLTEAG 274 ++V ERY ++ P TGRTHQIRVH +AGHP+ D YG R F + + Sbjct: 174 YEVLERYQGFAAIKALPKTGRTHQIRVHLMHAGHPVLCDPLYGSRRFLSLGELQHDDDRT 233 Query: 275 TGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNAR 319 LNR LHA + HP GE+ AP+ L+R LR R Sbjct: 234 VLLNRTALHAHRIAIAHPDDGEIREFIAPLPADLERTQNMLRQLR 278 >UniRef50_A4J479 Pseudouridine synthase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J479_DESRM Length = 303 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 86/308 (27%), Positives = 149/308 (48%), Gaps = 25/308 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + I G ++ LR ++ GV ++++ R R + +N+ +K ++ G+ + + Sbjct: 12 LIIPQTMDGWTVERVLRREV-GVSRTLLRRAKRNRVILLNQLPVKTNVTVKTGEVLEL-- 68 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG--LR 128 +E V P + ILYED H+L +NKP G VH + + G + L Sbjct: 69 --WMGSQETQVVPE-----RMELNILYEDAHLLAVNKPPGMLVHPLTNETSGTLANGVLY 121 Query: 129 ALRPEAR--FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 + VHRLDR+TSG++L+A+ + L Q+++ + YLALV+G+ Q Sbjct: 122 HWLQQGTIDRFRPVHRLDRNTSGIVLIARNPYVQQQLQIQMKQGQFVRRYLALVKGKVQP 181 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 +QAP+ +R+ +S GK + + ++V + A+LVR TGRTHQ+RV Sbjct: 182 EQGVIQAPIALEEGSFIKRM--ISPAGKEAISHYQVLRTFNQASLVRVELETGRTHQVRV 239 Query: 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDE 306 H + GHP+ D YG + + R LH A L F HP G ++I + Sbjct: 240 HMAHMGHPLLGDSLYGGDTSN---------IKRQALHCAYLAFNHPVQGSRIKISCSVAG 290 Query: 307 GLKRCLQK 314 +++ +++ Sbjct: 291 DIRQLMEE 298 >UniRef50_A9MGU8 Pseudouridine synthase n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MGU8_SALAR Length = 318 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 84/275 (30%), Positives = 129/275 (46%), Gaps = 21/275 (7%) Query: 12 AITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPP 70 ++ ++ GQR+D L +S I + V VN + KP+ K+ G+ V I Sbjct: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILNQRVLVNGQLCDKPKEKVLGGERVAIDA 69 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV-IEGLRA 129 E EA + I+YEDD ILV+NKP VH G+G G + L Sbjct: 70 EIDEEIRFEA--------QDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLH 121 Query: 130 LRP---EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 P + +VHRLD+DT+G+++VAK A L E L+ + + ++Y A+ G + Sbjct: 122 YYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTA 181 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 +V P+ ++ + + V GKP+ T +++ E + T +R TGRTHQIRV Sbjct: 182 G-GTVNEPISRHPTKRTH--MSVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 Query: 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLF 281 H + HP+ D YG R + RLF Sbjct: 239 HMAHITHPLVGDQVYGGRPRPPKAHR-----KRLF 268 >UniRef50_B7HGW1 Pseudouridine synthase n=52 Tax=Bacillales RepID=B7HGW1_BACC4 Length = 297 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 90/308 (29%), Positives = 145/308 (47%), Gaps = 27/308 (8%) Query: 13 ITADEAGQRIDNFLRTQLKGVPKSMIYRI-LRKGEVRVNKKRIKPEYKLEAGDEVRIPPV 71 I E G + FL+T KG+ K+ + I G + VN + ++L AG+E+R+ Sbjct: 10 IGPAEEGTLVREFLKT--KGISKAALTDIKFHGGAIEVNGQHASVRHQLRAGEELRVF-F 66 Query: 72 RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAV-----HGGSGLSFGVIEG 126 V ER E + I+YEDD +L++NK + + H ++ ++ Sbjct: 67 PVEERSEG------MMAEDIPLCIIYEDDAVLIINKEANMSTIPSREHPAGSVANALLSH 120 Query: 127 LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 A + +V RLDRDTSG++L+AK R L +Q ++K +++ Y A+V G+ Sbjct: 121 YDKQHL-ASTVHIVTRLDRDTSGLMLIAKNRFVHHLLSKQHQQKAVKRTYEAIVHGKIVE 179 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 + AP+ + ER V ++G+ + T FKV + T V TGRTHQIRV Sbjct: 180 REGMIDAPIGRKSDSIIER--TVCEDGQRAVTHFKVIDSTYHKTHVALELETGRTHQIRV 237 Query: 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDE 306 H + GHP+ D YG R + + R LH+ +L F HP + M + Sbjct: 238 HMAHVGHPLLGDSLYGGRRDE---------MKRQALHSKSLTFYHPILEKEMSFTIKLPS 288 Query: 307 GLKRCLQK 314 ++ L+ Sbjct: 289 DMQEVLRH 296 >UniRef50_B0PEI9 Pseudouridine synthase n=5 Tax=Bacteria RepID=B0PEI9_9FIRM Length = 338 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 87/302 (28%), Positives = 152/302 (50%), Gaps = 20/302 (6%) Query: 1 MKTETPSV-KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYK 59 MK+ V + I ++AGQR+D FL + +P+SM+Y+ +R +++N KR + + Sbjct: 10 MKSSLEDVMREFQINGNDAGQRVDKFLTKAVPLLPQSMLYKAIRTKRIKLNGKRCEISTR 69 Query: 60 LEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGL 119 L GD++ + + L+ AA+ I+YED++IL++NKP+G VH Sbjct: 70 LCTGDQLTLYLNDSFFDSRDGAFSFLRSPAAID--IIYEDENILLVNKPAGLVVHEDEHQ 127 Query: 120 S-FGVIEGLRALRPE----------ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLR 168 S +I ++ + L +R+DR+T+G+++ AK +ALR L+E+++ Sbjct: 128 SSDTLINRIQHHLYNCGVYNPAEENSFAPALCNRIDRNTAGIVIAAKNAAALRILNEKIK 187 Query: 169 EKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVS-QEGKPSETRFKVEERYA 227 + +QK YL +V G +++A L K+ + + +G+ T ++V + Sbjct: 188 ARELQKLYLCIVHGTMPKESDTLKAFLRKDARTNTVAVYDHPIPDGRTILTHYRVVAQKD 247 Query: 228 FATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAAL 287 +L+ +TGRTHQIR H + GHP+ D +YG + TGL L A L Sbjct: 248 RLSLLEIDLLTGRTHQIRAHLAHIGHPLLGDAKYGRNRDN-----HKTGLKHQALCAYKL 302 Query: 288 KF 289 F Sbjct: 303 TF 304 >UniRef50_C1FEQ4 Predicted protein n=2 Tax=Micromonas RepID=C1FEQ4_9CHLO Length = 357 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 96/325 (29%), Positives = 141/325 (43%), Gaps = 37/325 (11%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPVRVAEREEE 79 R+D FL Q+ GV +S I ++ G V VN KP +KL+ GD V E Sbjct: 37 RLDAFLADQISGVSRSRIVESIKSGVVVVNGNVTTKPSHKLDIGDRV-------ICGEIV 89 Query: 80 AVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG-VIEGLRALRPE----- 133 A P + +++EDDH++V+NKP G VH +G + G ++ L E Sbjct: 90 ASPPTEVAPENIPLDVVFEDDHLVVVNKPPGMVVHPSAGHAGGSLVNALLFHCNERSNRG 149 Query: 134 --------ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 L +VHR+D+ TSG+L++AK +A L Q + +++ YLA+V G Sbjct: 150 DDASKMIDVPRLGVVHRIDKGTSGLLVMAKDAAAQAGLQTQFANRSVRRRYLAIVLGTPA 209 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY--AFATLVRCSPVTGRTHQ 243 + AP+ ++ + + G+ + + F V R A+LV TGRTHQ Sbjct: 210 RESGRIDAPIGRDPADRLKMAIVRGATGRQAISNFGVRARLVRGNASLVEWQLETGRTHQ 269 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQ-------------LTEAGTGLNRLFLHAAALKFT 290 IRVH + GHPI D+ YG E R LHA +L F Sbjct: 270 IRVHAREMGHPIVGDEAYGGGGSAAAEFLRRDGAMSAAAAREIVAKCARPMLHARSLGFR 329 Query: 291 HPGTGEVMRIEAPMDEGLKRCLQKL 315 HP TGE + +L Sbjct: 330 HPVTGEEISFAVEPPPDFVDAFTEL 354 >UniRef50_B6IQX5 Pseudouridine synthase n=1 Tax=Rhodospirillum centenum SW RepID=B6IQX5_RHOCS Length = 336 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 97/322 (30%), Positives = 150/322 (46%), Gaps = 12/322 (3%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 ++E V+ + DE R+D + + + + ++LR G+VRV+ KR + +L Sbjct: 3 ESEKKQVETRLVGDDEGEVRLDRWFKRHYPLLSHIQLQKLLRTGQVRVDGKRAEASTRLL 62 Query: 62 AGDEVRIPPVRVAE-----REEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGG 116 G VRIPP+ A R + + L +L+ D ++VL+KP+G A GG Sbjct: 63 PGQSVRIPPLPDAPPPDAVRPKARPEVDERAAKELRARVLFRDHDVIVLDKPAGLATQGG 122 Query: 117 SGLSFGVIEGLRALRPEARF-LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKD 175 + + L AL+ EA +LVHRLD+DTSG L++A+ +A L R + +K Sbjct: 123 TNQVKHLDAMLDALKFEAEGRPKLVHRLDKDTSGCLVLARSAAAAAKLTAAFRSREARKI 182 Query: 176 YLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEER-YAFATLVRC 234 Y A+ G + + P+ K GER+ EG + T + V E + A V Sbjct: 183 YWAVTVGVPKPMKGRIDLPVAKEAGTRGERMTVDEDEGVHAITYYTVLEHAHKQAAFVAL 242 Query: 235 SPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRL-FLHAAALKFTHPG 293 P TGRTHQ+RVH G PI D +Y + E L R LHA + HP Sbjct: 243 WPRTGRTHQLRVHMAALGTPILGDGKYAGQ---GAFLEGAGDLPRQLHLHARRIILPHPR 299 Query: 294 TGEVMRIEAPMDEGLKRCLQKL 315 G V+ + AP+ + ++ Sbjct: 300 GG-VIDVTAPLPKHMRPAWDYF 320 >UniRef50_Q6Q916 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q6Q916_9GAMM Length = 311 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 83/315 (26%), Positives = 142/315 (45%), Gaps = 20/315 (6%) Query: 12 AITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPV 71 ++ + + R+D + ++ I + + +G V +N P + GD ++I P Sbjct: 6 TVSKEHSKMRLDKVSTIIFEDFSRTQIKKWILEGRVFLNDDIASPRDLVHEGDSIQIDP- 64 Query: 72 RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRAL 130 +AE + V + ++YE+D L++NK +H G+G S G + L Sbjct: 65 -IAEEKISWVP------EEIDIDVIYENDDYLIINKQPNLIMHPGAGCSSGTLANALLHH 117 Query: 131 RPEARFL---ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 PE + + +VHRLD+DTSGV+LVA+ + L+++ + K Y A+V G Sbjct: 118 YPELKNIARAGIVHRLDKDTSGVILVARNDKFRNYFVDLLQKREVTKLYSAIVVGTIIGS 177 Query: 188 VKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVH 247 K P+ ++ + + + +GK SET K++E +L+ S +TGRTHQIRVH Sbjct: 178 FKVTD-PIGRD--KKNRVKMSIRSDGKESETFVKLKESLGNYSLLDISIMTGRTHQIRVH 234 Query: 248 TQYAGHPIAFDDRYGD-----REFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 PI D+ Y + +L + R LHA L F T E Sbjct: 235 LSSKKLPIIGDNTYNPAKNIAKGTSSKLIDIIKQFPRQALHAYQLSFKDMHTDEFKTFNC 294 Query: 303 PMDEGLKRCLQKLRN 317 + + +K + L+ Sbjct: 295 DIPDDMKYLIDILKK 309 >UniRef50_A4FXG9 Pseudouridine synthase, RluA family n=5 Tax=Methanococcus RepID=A4FXG9_METM5 Length = 298 Score = 284 bits (727), Expect = 4e-75, Method: Composition-based stats. Identities = 83/321 (25%), Positives = 153/321 (47%), Gaps = 27/321 (8%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 M+++ +K V I + AG ++ + L+ + MI + ++ ++ VN K I + KL Sbjct: 1 MESQKKILK-VTIDSKIAGNKLIDVLKDDF-ELSNKMIKKFDKEKKIFVNSKNISLKSKL 58 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 + + V + E + L ++YEDD +L+++KP VH + Sbjct: 59 KENETVSV---------EIDCGINNIDPEKLLLCVIYEDDDLLIVDKPKNMVVHPTKNVL 109 Query: 121 FGVIEGL----RALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDY 176 G + + + + + V+RLD DT+G+L++AK + + L +Q+ E ++K Y Sbjct: 110 SGTLANAISNHQKINNQNYKIRFVNRLDMDTTGLLIIAKNSYSHQQLAKQMDEGILEKIY 169 Query: 177 LALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSP 236 + +V G S ++ + N + S GK S+T++KV E + +++ Sbjct: 170 IVVVNGHLDSKEGVIEDSIDLNDDGIKREL---STFGKISKTKYKVIEEFNNVSVLEIKL 226 Query: 237 VTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGE 296 +TGRTHQIRVH G+ I D YG + + R LH+ L+F HP T E Sbjct: 227 LTGRTHQIRVHLSSFGNNIIGDTLYG---------KTADLIERQALHSHILRFIHPITKE 277 Query: 297 VMRIEAPMDEGLKRCLQKLRN 317 M I + + + ++ ++ L+N Sbjct: 278 NMEIRSKLPDDMENLIKNLKN 298 >UniRef50_C2D7A7 Pseudouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7A7_9ACTN Length = 338 Score = 283 bits (726), Expect = 4e-75, Method: Composition-based stats. Identities = 83/323 (25%), Positives = 148/323 (45%), Gaps = 28/323 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIP 69 + +T R+D FL T + ++ ++ + +V +N ++ GD + + Sbjct: 8 LLVTPQHDRMRLDAFLSTCSELGARNACAHLIEQRKVEINDTLALSKSERVRMGDRICV- 66 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI----- 124 A++ + S H+ A++ I YEDD++LV++K +G H G + Sbjct: 67 ----AQQIDNTSSSHIMPNASIPLDIRYEDDYLLVISKQTGLVCHPSPGHVDDTLSNALV 122 Query: 125 -----EGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 E L L+ + R +VHRLD DT+G+++ AK + ++L + +R + + Y+ L Sbjct: 123 AHCGYEHLGLLQGDDR-PGIVHRLDMDTTGLMVAAKDNTTQQALQDLIRLRVFDRRYIVL 181 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA------FATLVR 233 V+G ++ + ++ + + + + T FK ER+ +L+ Sbjct: 182 VQGYVTPDEGTITTGIARSKKNRLKMCISKDPASREAITTFKTLERFEAGSKDDGYSLLE 241 Query: 234 CSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPG 293 C TGRTHQIRVH +Y GH + D YG R+ GL R FLH+ + F HP Sbjct: 242 CHLYTGRTHQIRVHMRYVGHSVVGDPLYG-----RKGDALNQGLQRQFLHSWRMSFDHPI 296 Query: 294 TGEVMRIEAPMDEGLKRCLQKLR 316 T E ++ + L L +L+ Sbjct: 297 THEHLQFCDKLPSDLSEVLARLQ 319 >UniRef50_Q67N67 Pseudouridine synthase n=1 Tax=Symbiobacterium thermophilum RepID=Q67N67_SYMTH Length = 327 Score = 283 bits (724), Expect = 7e-75, Method: Composition-based stats. Identities = 86/334 (25%), Positives = 141/334 (42%), Gaps = 49/334 (14%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + G R+ +L +LK + ++++ R G + V+ + + L G+ V + Sbjct: 3 FVVDPSARGLRLSQYLFDRLK-LSRTVVRRAKTSGGILVDGRPARTSLVLAGGEVVEVRV 61 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 + E E + ++YED +LV++KP+G VH G + A Sbjct: 62 AQEGRVEPEPI----------PIQVVYEDPWLLVVDKPAGMVVHPVRDYVSGTLANAVAH 111 Query: 131 R----PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 V R+DR+TSG++L AK + L +L + +++ Y+A+V G + Sbjct: 112 HLLRSGSDPVARPVQRIDRETSGLVLFAKDPAVAGLLARELERQKLERRYVAVVEGAVAA 171 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQE-------------------------GKPSETRFK 221 +V P+ + R V G+P+ T ++ Sbjct: 172 DAGTVDRPIRRVWGHPVAREVAEGPRTPEQERLLAEAAAQGRALREDWTAAGQPAVTHWR 231 Query: 222 VEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLF 281 V R+ AT++ TGRTHQIRVH Y GHP+ D+ YG T + R Sbjct: 232 VLRRWPAATMLELRLETGRTHQIRVHMAYLGHPLLGDELYGGSR---------TLIQRQA 282 Query: 282 LHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 LHAA L F HP T E +R AP+ L+ + +L Sbjct: 283 LHAATLAFVHPVTREPVRFTAPLPADLEDLVARL 316 >UniRef50_D2RJC8 Pseudouridine synthase, RluA family n=2 Tax=Veillonellaceae RepID=D2RJC8_ACIFE Length = 294 Score = 283 bits (724), Expect = 7e-75, Method: Composition-based stats. Identities = 88/307 (28%), Positives = 149/307 (48%), Gaps = 29/307 (9%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRIP 69 + D AG + R + + + + +I G + VN + P ++LEAGD + Sbjct: 5 YQVDRDHAGCCVRQAARGPM-HLSEKLWRKIKWNGTITVNGSPVSSPSHRLEAGDRLVFR 63 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGG-SGLSFGVIEGLR 128 E+ AV P L +LYED+ +LV++KP+G +H SG +++ + Sbjct: 64 W-----EEKAAVIP-----VHLPLSLLYEDEDLLVVDKPAGMLIHPTWSGARDTLVQAVG 113 Query: 129 ALR---PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 + + ++RLDRDT+GVL+VAK A +L + ++YLA+ G+W Sbjct: 114 GYFRRTGQHCGIHPLYRLDRDTTGVLMVAKSAFAKHALTR--DHSQIYREYLAVCEGRWG 171 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245 ++ P+ + VR +G+P+ T +++ E T+++ +TGRTHQIR Sbjct: 172 IPQGRIEHPIGRVAEGVDRWTVR--PDGRPAVTEYRILEENQEWTVLKIHLLTGRTHQIR 229 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMD 305 VH + GHP+ D YG ++ + R LHA ++F HP TGE + + APM Sbjct: 230 VHFAHEGHPLVGDPLYGTKD---------GRIARQALHAWTVRFRHPRTGEEILLTAPMP 280 Query: 306 EGLKRCL 312 ++ L Sbjct: 281 GDMEGLL 287 >UniRef50_D2M2K8 Pseudouridine synthase, RluA family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2M2K8_BACS4 Length = 298 Score = 283 bits (724), Expect = 8e-75, Method: Composition-based stats. Identities = 81/310 (26%), Positives = 140/310 (45%), Gaps = 24/310 (7%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRI-LRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 I G+ + ++LR + K + + + I G++ VN K Y L GD + + Sbjct: 8 WVIDNAATGKLLRDYLREE-KQISRKALADIKFNGGQITVNGKEENVRYTLRLGDVIEV- 65 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGL-SFGVIEGLR 128 + E+ ++ P+ + I++ED+H++++NKP + + Sbjct: 66 -IFPKEKVSRSIKPY-----KIKLHIIFEDEHVIIINKPPHLPTIPTRNEGEPSLAGAIL 119 Query: 129 ALRPEARFL---ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 A E V RLDRDTSG+++VAK R + + +++ Y+ALV G Sbjct: 120 AYYIENGIPSTFHAVSRLDRDTSGLVMVAKHRYMHDLCVKLQKSYEIKRSYVALVEGILS 179 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245 ++ P+ + ER V++ GK + T ++V +RY+ ATL++ + TGRTHQIR Sbjct: 180 DDYNTIDLPISRKTTSIIER--EVNEFGKSAITHYEVLKRYSGATLLQLTLETGRTHQIR 237 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMD 305 VH GHP+ D YG ++R LH+ L F HP P+ Sbjct: 238 VHMSAIGHPLLGDTLYGG---------DVRYIDRQALHSHQLSFFHPINKREYTFHCPIP 288 Query: 306 EGLKRCLQKL 315 + ++ + K Sbjct: 289 DDIEDAMSKF 298 >UniRef50_C7GZW0 Pseudouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZW0_9FIRM Length = 318 Score = 282 bits (723), Expect = 9e-75, Method: Composition-based stats. Identities = 76/315 (24%), Positives = 152/315 (48%), Gaps = 28/315 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + + + I + ++ + + + ++ ++ +R+N K K + +AGD + + Sbjct: 23 YVVEHNFENRSIKSIIKREY-SISSRFLSKLKQEDLIRLNGKPAKNWFTPKAGDVIEL-- 79 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 V +E +P+ + + +YED+H+LV++KP+G VH G I Sbjct: 80 --VMPKESSYFTPY----SGIEINAVYEDEHLLVIDKPAGIVVHPTHGYEENTIAHALIH 133 Query: 131 R----PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 E + ++RLD DT+G+L++AK + ++ +++ ++K YLA+V G + Sbjct: 134 YMDTVGEEFKIRFINRLDMDTTGLLMIAKNQFIQNAVVSEMKRGNVEKRYLAVVHGLPCN 193 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA--FATLVRCSPVTGRTHQI 244 + AP+ + +++ + GKPS T +KV + + TGRTHQI Sbjct: 194 REGIIDAPIKAVEGEPRRQVM---EGGKPSITEYKVVGVSDELNVSFLDVRLHTGRTHQI 250 Query: 245 RVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPM 304 RVH ++ G PI D+ YG +E +R LH+ L+FTHP + +++ + A + Sbjct: 251 RVHLKHIGCPILGDEFYGGKE----------SADRQLLHSRYLRFTHPVSKKIVELTANL 300 Query: 305 DEGLKRCLQKLRNAR 319 + + L ++ ++ Sbjct: 301 PDDIASILTHMQMSK 315 >UniRef50_A7HL94 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A7HL94_FERNB Length = 317 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 102/323 (31%), Positives = 154/323 (47%), Gaps = 35/323 (10%) Query: 4 ETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEA 62 +VK+ + R+D FLR LK VP S IY+ LR G+V++N K++K P KL Sbjct: 12 NNSNVKVWTVNESNYFSRVDKFLRKMLKNVPLSAIYKFLRTGKVKINGKKVKDPSTKLNI 71 Query: 63 GDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF- 121 GD + + + E + K + I+YED+ I+ +NKP+G +VH G ++ Sbjct: 72 GDVIELIEESLDNYSREYLE---LKPVKMDLDIIYEDELIIAINKPAGVSVHPGKNVNKP 128 Query: 122 GVIEGLRALRPEARF-LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 +IEGL E F LVHRLD++TSGVL+VAK RS R L E + + ++K Y ALV Sbjct: 129 SIIEGLIHYGKENGFEPFLVHRLDKETSGVLIVAKDRSVARELSEIISSRNVEKIYNALV 188 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA--------FATLV 232 G+ Q ++ P+ +G+ + + E + + + Sbjct: 189 FGKVQK--VTINTPI----------------DGQDAVSHIIPIEYFRVKLNGISVELSFL 230 Query: 233 RCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHP 292 TGR HQIR H PI D YG+ +R+ ++ GL R FLH +KF Sbjct: 231 EVEIETGRKHQIRKHLSSINCPIVGDKDYGNFRLNREFSK-NFGLKRHFLHCKQMKFV-- 287 Query: 293 GTGEVMRIEAPMDEGLKRCLQKL 315 G I A + + L ++ L Sbjct: 288 FNGRNYNILAQLPKDLTTVIKYL 310 >UniRef50_A9KNX9 Pseudouridine synthase n=21 Tax=Bacteria RepID=A9KNX9_CLOPH Length = 346 Score = 281 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 158/334 (47%), Gaps = 27/334 (8%) Query: 4 ETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAG 63 + V+ + I +EAGQR+D FL L PKS Y++LRK + +N K+ + KL G Sbjct: 14 DVNKVREITIVQNEAGQRLDKFLAKYLNKAPKSFFYKMLRKKNITLNGKKAEGAEKLIEG 73 Query: 64 DEVRIPPVRVAEREEEAVSPHLQKVA-----ALADVILYEDDHILVLNKPSGTAVHGGSG 118 D VR+ +AE E+ Q A A+ +LYED H++++NKP G Sbjct: 74 DIVRLF---LAEETIESFKESYQLDAKVNQRAVKLDVLYEDSHVVIINKPIGMLSQRAKE 130 Query: 119 LSFGVIEGLRALRPE----------ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLR 168 ++E L A E + +RLDR+TSG+++ K L+ + +L+ Sbjct: 131 SDVSLVELLIAYLLEMGSLTKEELSTFKPSVCNRLDRNTSGIVIAGKSLLGLQEMSAKLQ 190 Query: 169 EKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQ-EGKPS--ETRFKVEER 225 ++ + K Y +V+G + L K+ + RI +G+ S ET ++ Sbjct: 191 DRSLHKYYRCIVKGTMTKGA-RINGYLAKDEKTNKVRITTNDPNDGESSYIETEYQPILS 249 Query: 226 YAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAA 285 TL+ +TG+THQIR H GHPI D +YGD ++++ + GL+ LH+ Sbjct: 250 KNGYTLLEVLLITGKTHQIRAHLSSIGHPIIGDTKYGDETLNKKMQKQ-YGLSHQLLHSY 308 Query: 286 ALKFTH-PGTGEVMR---IEAPMDEGLKRCLQKL 315 L+F + P E + I AP + K + L Sbjct: 309 RLEFPNLPKELEKLSNQKIIAPYPKLFKNLEKSL 342 >UniRef50_O31613 Uncharacterized RNA pseudouridine synthase yjbO n=53 Tax=Bacillaceae RepID=YJBO_BACSU Length = 283 Score = 281 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 88/288 (30%), Positives = 137/288 (47%), Gaps = 25/288 (8%) Query: 32 GVPKSMIYRI-LRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAA 90 G+ K ++ I G++++N + + +Y L+ GD + + E P Sbjct: 11 GISKRLLTDIKFGGGDLQINGEHVTVKYVLKEGDLLIVKFPEEQVSETLLAEP------- 63 Query: 91 LADVILYEDDHILVLNKPSGTAV-----HGGSGLSFGVIEGLRALRPEARFLELVHRLDR 145 + ILYED+H+LV+NK + H ++ G+I+ + A + LV RLDR Sbjct: 64 VPLDILYEDEHVLVINKQPYVSSIPSREHPSGSIANGIIDHYQTTGVRAT-VHLVTRLDR 122 Query: 146 DTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGER 205 DTSG++LVAK R A L + +++ Y A+V G+ +V AP+ ++ ER Sbjct: 123 DTSGIMLVAKHRFAHSILSSAQKNGLVKRRYAAVVHGRMAQMEGTVDAPIGRHPDSIIER 182 Query: 206 IVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDRE 265 V+ +G+ + T F V T V TGRTHQIRVH Y GHP+ D YG Sbjct: 183 --TVTPDGQKAVTHFYVTCANDDMTSVALQLETGRTHQIRVHMSYLGHPLCGDTLYGGTR 240 Query: 266 FDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQ 313 + R LH+ L F HP T E MR AP+ + + + ++ Sbjct: 241 ---------QEIGRQALHSEHLSFIHPLTQENMRFHAPLPQDMSKLIK 279 >UniRef50_B7GAM3 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GAM3_PHATR Length = 325 Score = 281 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 85/309 (27%), Positives = 137/309 (44%), Gaps = 26/309 (8%) Query: 20 QRIDNFLRTQLKGVPKSMIYRILRKGEVRV---NKKRI---KPEYKLEAGDEVRIPPVRV 73 +RID L + +S ++ V + N + +K+E G ++ I R Sbjct: 1 KRIDAVLAALEPEMSRSFCGNLVANKRVSIIQENGDNCLVDRKSFKVEPGQQLIISLPRE 60 Query: 74 AEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPE 133 E L I++ED+H++V+NK + VH +G G + A Sbjct: 61 EGASE-------IIAQDLPLDIIFEDEHMIVINKAANMVVHPAAGNWDGTVVNALAYYLA 113 Query: 134 AR------FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 R +VHRLD+ T+GVL+VAK L +L + ++K Y+A+ G H Sbjct: 114 NRSESISFRPGIVHRLDKGTTGVLVVAKTSQTLATLSNFFAARQVKKTYMAITVGNPGKH 173 Query: 188 VKSVQAPLLKNILQSGERIVRVSQE-----GKPSETRFKVEERYAFATLVRCSPVTGRTH 242 V + P+ ++ L V G+ + + +LV+ TGRTH Sbjct: 174 V-VIDKPIGRHPLHRQRMRVVPDPHQKNSTGRRALSYVDTLAFDGKLSLVQVRIETGRTH 232 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH Q PI DD YG +++++L++ + R LHA L+ HP TGE M +A Sbjct: 233 QIRVHLQDRHTPIYGDDIYGLADWNKKLSKTHR-IVRPLLHAYKLEINHPVTGEPMVFKA 291 Query: 303 PMDEGLKRC 311 + + +KR Sbjct: 292 SLADDMKRI 300 >UniRef50_Q63E77 Pseudouridine synthase n=73 Tax=Bacillaceae RepID=Q63E77_BACCZ Length = 307 Score = 280 bits (718), Expect = 3e-74, Method: Composition-based stats. Identities = 89/313 (28%), Positives = 154/313 (49%), Gaps = 26/313 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + + A G I++ L+ + +PK +++++ + V VN ++ + L+ GD++++ Sbjct: 12 MTVPAKWNGISIESLLKIEW-EIPKKLLHQLRMEKGVTVNGEQRRWNELLKEGDKLQV-- 68 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 + EE V P ++ ++YEDDH+L++NKP H G + L A Sbjct: 69 -HMFMEEEYDVEPEYGELH-----VVYEDDHVLIVNKPEKMDTHPSEKGGMGTLANLVAF 122 Query: 131 RPEARFL----ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 + + L +HRLD+DT+G ++ AK R A + L E+ +++ Y ALV G+ + Sbjct: 123 HFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAGAIMDRLLMERKIKRTYAALVEGKVKK 182 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY--AFATLVRCSPVTGRTHQI 244 ++ A + ++ + R RVS +G + T +KVEE + TLV TGRTHQI Sbjct: 183 KQGTIDAAIGRDRHHATRR--RVSPKGDQAITYYKVEEYFKKQNVTLVTLQLETGRTHQI 240 Query: 245 RVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPM 304 RVH Y G+P+ D YG ++R LHA + F HP T E + ++ P Sbjct: 241 RVHMSYNGNPLVGDVLYGGGT---------KYMSRQALHAMKINFLHPITKEEIEVDVPF 291 Query: 305 DEGLKRCLQKLRN 317 L ++ + Sbjct: 292 PTKLNDTMKAFQR 304 >UniRef50_C7MN62 Pseudouridine synthase n=8 Tax=Coriobacteriaceae RepID=C7MN62_CRYCD Length = 347 Score = 280 bits (717), Expect = 5e-74, Method: Composition-based stats. Identities = 80/324 (24%), Positives = 136/324 (41%), Gaps = 31/324 (9%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + +T +AG R+D+ L +S + + G+V VN + GD + Sbjct: 7 LIVTQADAGMRLDSLLAVSGAYPSRSAAVKQIEAGKVLVNGLARSKRSIVAPGDTIVYEE 66 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR-- 128 + +A P + + +ED ++ ++K +G VH G G + Sbjct: 67 IPLATHIPLRGEP-------IPLDVRFEDRWMMAISKQAGLCVHPAPGHEGGTLVNALIY 119 Query: 129 -------ALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 A +VHRLD DTSG+++ AK + +L + +R+ + + YL LV Sbjct: 120 AYGRDSLAHVQGDDRPGIVHRLDMDTSGLMMCAKDDTCGMALQDLVRDHKVDRRYLTLVH 179 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA------FATLVRCS 235 G + P+ + + + + T F V ER+ TL+ C Sbjct: 180 GNIAFDTGQIDEPIGRVGDDRLRMKISYRPTARNALTTFTVLERFEAGRADNGYTLLECR 239 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRY--GDREFDRQLTEAGTGLNRLFLHAAALKFTHPG 293 TGRTHQIRVH ++ GH D Y G+ + + + L+R FLH+ +L F HP Sbjct: 240 LYTGRTHQIRVHMEFIGHCCVGDPLYRWGNEQVNLE-------LSRQFLHSYSLSFNHPM 292 Query: 294 TGEVMRIEAPMDEGLKRCLQKLRN 317 TG+ + + + L L+ L + Sbjct: 293 TGDDIALVDGLPPDLFGALRSLED 316 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q8ZQ16 Ribosomal large subunit pseudouridine synthase C... 417 e-115 UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 407 e-112 UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3... 403 e-111 UniRef50_C9KPZ8 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 393 e-108 UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (c... 391 e-107 UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B... 391 e-107 UniRef50_Q82WZ5 Ribosomal large subunit pseudouridine synthase D... 390 e-107 UniRef50_P44433 Ribosomal large subunit pseudouridine synthase C... 386 e-106 UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defec... 386 e-106 UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides R... 385 e-106 UniRef50_B8FLB4 Pseudouridine synthase n=2 Tax=Bacteria RepID=B8... 385 e-105 UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiace... 384 e-105 UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix o... 384 e-105 UniRef50_Q2LWV4 Pseudouridine synthase n=1 Tax=Syntrophus acidit... 383 e-105 UniRef50_Q9KQH0 Ribosomal large subunit pseudouridine synthase C... 383 e-105 UniRef50_Q9JVB6 Ribosomal large subunit pseudouridine synthase D... 381 e-104 UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 381 e-104 UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae Re... 381 e-104 UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1... 380 e-104 UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_... 379 e-104 UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_... 378 e-103 UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri ... 378 e-103 UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae ... 378 e-103 UniRef50_Q5QZ45 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 378 e-103 UniRef50_Q3A0C2 Pseudouridine synthase n=13 Tax=Bacteria RepID=Q... 378 e-103 UniRef50_Q8ZFU1 Ribosomal large subunit pseudouridine synthase C... 376 e-103 UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0... 376 e-103 UniRef50_Q8XYX8 Ribosomal large subunit pseudouridine synthase D... 375 e-102 UniRef50_A9IQ66 Pseudouridine synthase n=5 Tax=Bacteria RepID=A9... 375 e-102 UniRef50_B8E0R4 Pseudouridine synthase n=1 Tax=Dictyoglomus turg... 374 e-102 UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes Rep... 374 e-102 UniRef50_A0L9J0 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 372 e-102 UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B... 372 e-101 UniRef50_A7NB61 Pseudouridine synthase n=18 Tax=Francisella RepI... 371 e-101 UniRef50_C6WV38 Pseudouridine synthase n=3 Tax=Proteobacteria Re... 371 e-101 UniRef50_C4FWV7 Pseudouridine synthase n=2 Tax=Firmicutes RepID=... 370 e-101 UniRef50_C7H7W3 Ribosomal large subunit pseudouridine synthase D... 370 e-101 UniRef50_P74346 Uncharacterized RNA pseudouridine synthase slr16... 370 e-101 UniRef50_A3EQJ0 Pseudouridine synthase n=1 Tax=Leptospirillum ru... 370 e-101 UniRef50_B9JRD0 Pseudouridine synthase n=1 Tax=Agrobacterium vit... 369 e-101 UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 369 e-101 UniRef50_Q49WX8 Pseudouridine synthase n=1 Tax=Staphylococcus sa... 369 e-101 UniRef50_A1URK8 Pseudouridine synthase n=2 Tax=Bartonella RepID=... 369 e-101 UniRef50_Q3AVX8 Pseudouridine synthase n=40 Tax=cellular organis... 368 e-100 UniRef50_D0KVM5 Pseudouridine synthase n=11 Tax=Proteobacteria R... 368 e-100 UniRef50_C1F7V3 Pseudouridine synthase n=1 Tax=Acidobacterium ca... 368 e-100 UniRef50_Q01Q94 Pseudouridine synthase n=1 Tax=Candidatus Soliba... 366 e-100 UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella ad... 366 e-100 UniRef50_P65834 Ribosomal large subunit pseudouridine synthase D... 366 e-100 UniRef50_A3M2Y1 Pseudouridine synthase n=18 Tax=Gammaproteobacte... 366 e-100 UniRef50_A9BMW0 Pseudouridine synthase n=10 Tax=Comamonadaceae R... 366 e-100 UniRef50_C6XFD0 Pseudouridine synthase n=1 Tax=Candidatus Liberi... 365 1e-99 UniRef50_C7RM94 Pseudouridine synthase n=11 Tax=Proteobacteria R... 365 1e-99 UniRef50_A5EX53 Pseudouridine synthase n=1 Tax=Dichelobacter nod... 365 2e-99 UniRef50_A5WFS2 Pseudouridine synthase n=3 Tax=Psychrobacter Rep... 364 2e-99 UniRef50_B2RIT5 Pseudouridine synthase n=80 Tax=root RepID=B2RIT... 364 3e-99 UniRef50_B6AN83 Pseudouridine synthase n=2 Tax=Leptospirillum Re... 363 3e-99 UniRef50_P50513 Ribosomal large subunit pseudouridine synthase D... 363 4e-99 UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limn... 363 7e-99 UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_17... 362 9e-99 UniRef50_A5GW76 Pseudouridine synthase n=1 Tax=Synechococcus sp.... 362 9e-99 UniRef50_A7HV45 Pseudouridine synthase n=56 Tax=Alphaproteobacte... 362 1e-98 UniRef50_B2A2J2 Pseudouridine synthase n=1 Tax=Natranaerobius th... 361 2e-98 UniRef50_Q87AR7 Ribosomal large subunit pseudouridine synthase D... 361 2e-98 UniRef50_D1RB31 Pseudouridine synthase n=1 Tax=Parachlamydia aca... 361 2e-98 UniRef50_Q2W2D5 Pseudouridine synthase n=39 Tax=Bacteria RepID=Q... 360 3e-98 UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter f... 360 4e-98 UniRef50_Q6AJM1 Pseudouridine synthase n=1 Tax=Desulfotalea psyc... 360 4e-98 UniRef50_A3RGY8 Pseudouridine synthase n=1 Tax=uncultured bacter... 360 4e-98 UniRef50_C8P3R0 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 360 5e-98 UniRef50_Q1ILA4 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 360 5e-98 UniRef50_A0L8J2 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 360 6e-98 UniRef50_D2R7T3 Pseudouridine synthase, RluA family n=1 Tax=Pire... 359 7e-98 UniRef50_C8WW59 Pseudouridine synthase n=2 Tax=Alicyclobacillus ... 358 1e-97 UniRef50_Q2S3B7 Pseudouridine synthase n=1 Tax=Salinibacter rube... 358 1e-97 UniRef50_UPI00016C3FBA ribosomal large subunit pseudouridine syn... 358 2e-97 UniRef50_B3PEU4 Pseudouridine synthase n=18 Tax=Gammaproteobacte... 357 3e-97 UniRef50_C8PVB8 Pseudouridine synthase n=2 Tax=Moraxellaceae Rep... 357 4e-97 UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae... 356 4e-97 UniRef50_C9LM35 Pseudouridine synthase n=1 Tax=Dialister invisus... 356 5e-97 UniRef50_C0N6T7 Pseudouridine synthase n=1 Tax=Methylophaga thio... 356 5e-97 UniRef50_A6SXT6 Pseudouridine synthase n=1 Tax=Janthinobacterium... 356 6e-97 UniRef50_D1CBT6 Pseudouridine synthase n=1 Tax=Thermobaculum ter... 355 9e-97 UniRef50_D0L1K7 Pseudouridine synthase n=1 Tax=Halothiobacillus ... 355 1e-96 UniRef50_Q7UHX8 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 355 1e-96 UniRef50_C8QZ10 Pseudouridine synthase n=1 Tax=Desulfurivibrio a... 355 1e-96 UniRef50_B9YI75 Pseudouridine synthase, RluA family n=1 Tax='Nos... 355 2e-96 UniRef50_A5IBH6 Pseudouridine synthase n=6 Tax=Legionella RepID=... 353 6e-96 UniRef50_B6J6C4 Pseudouridine synthase n=7 Tax=Coxiella burnetii... 353 6e-96 UniRef50_Q3JQ55 Pseudouridine synthase n=170 Tax=cellular organi... 353 7e-96 UniRef50_D0J9U5 Pseudouridine synthase n=2 Tax=Blattabacterium R... 353 7e-96 UniRef50_A8GQ59 Pseudouridine synthase n=15 Tax=Rickettsia RepID... 352 9e-96 UniRef50_Q6MEC0 Pseudouridine synthase n=1 Tax=Candidatus Protoc... 352 1e-95 UniRef50_Q0BWH2 Pseudouridine synthase n=3 Tax=Alphaproteobacter... 351 1e-95 UniRef50_B6BTN1 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 351 2e-95 UniRef50_C0ZH07 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 351 2e-95 UniRef50_Q0VQN9 Pseudouridine synthase n=2 Tax=Alcanivorax RepID... 351 2e-95 UniRef50_D1VS73 Pseudouridine synthase n=1 Tax=Peptoniphilus lac... 350 3e-95 UniRef50_Q03WF6 Pseudouridine synthase n=9 Tax=Firmicutes RepID=... 350 4e-95 UniRef50_C6J6E3 Pseudouridine synthase n=2 Tax=Bacillales RepID=... 350 4e-95 UniRef50_B0VJ94 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 350 5e-95 UniRef50_Q126H9 Pseudouridine synthase n=1 Tax=Polaromonas sp. J... 350 6e-95 UniRef50_C5VRN0 Pseudouridine synthase n=1 Tax=Clostridium botul... 349 7e-95 UniRef50_Q89AH2 Ribosomal large subunit pseudouridine synthase C... 349 7e-95 UniRef50_D0RPR1 Pseudouridine synthase n=1 Tax=alpha proteobacte... 349 8e-95 UniRef50_Q1Q689 Similar to ribosomal large subunit pseudouridine... 348 1e-94 UniRef50_C5S931 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 348 1e-94 UniRef50_A1AW00 Pseudouridine synthase n=2 Tax=sulfur-oxidizing ... 347 3e-94 UniRef50_B5YKV0 Pseudouridine synthase n=1 Tax=Thermodesulfovibr... 347 4e-94 UniRef50_Q312A0 Pseudouridine synthase, RluD n=6 Tax=Bacteria Re... 346 5e-94 UniRef50_A8ZXZ8 Pseudouridine synthase n=1 Tax=Desulfococcus ole... 346 7e-94 UniRef50_A6DUC9 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 346 8e-94 UniRef50_Q0A8Q9 Pseudouridine synthase n=4 Tax=Ectothiorhodospir... 346 8e-94 UniRef50_C9RQF0 Pseudouridine synthase, RluA family n=1 Tax=Fibr... 346 8e-94 UniRef50_C1A885 Pseudouridine synthase n=1 Tax=Gemmatimonas aura... 345 9e-94 UniRef50_C1SM47 Pseudouridine synthase n=1 Tax=Denitrovibrio ace... 345 1e-93 UniRef50_Q2SS88 Pseudouridine synthase n=4 Tax=Mollicutes RepID=... 345 1e-93 UniRef50_A9NGF1 Pseudouridine synthase n=1 Tax=Acholeplasma laid... 345 1e-93 UniRef50_C0QPR5 Pseudouridine synthase n=4 Tax=Hydrogenothermace... 345 1e-93 UniRef50_C0QAZ3 RluD1 n=1 Tax=Desulfobacterium autotrophicum HRM... 344 3e-93 UniRef50_B8GZR6 Pseudouridine synthase n=2 Tax=Caulobacter vibri... 344 3e-93 UniRef50_C6XNC0 Pseudouridine synthase n=1 Tax=Hirschia baltica ... 343 6e-93 UniRef50_Q21K97 Pseudouridine synthase n=10 Tax=Gammaproteobacte... 342 1e-92 UniRef50_D1Y3Y9 Pseudouridine synthase n=1 Tax=Pyramidobacter pi... 342 1e-92 UniRef50_A3Y8C6 Pseudouridine synthase n=1 Tax=Marinomonas sp. M... 341 2e-92 UniRef50_A4WSV2 Pseudouridine synthase n=41 Tax=Alphaproteobacte... 340 3e-92 UniRef50_A0Q1S9 Pseudouridine synthase n=32 Tax=Clostridium RepI... 340 3e-92 UniRef50_B4U613 Pseudouridine synthase, RluA family n=1 Tax=Hydr... 340 4e-92 UniRef50_A3DDK9 Pseudouridine synthase, RluA family n=3 Tax=Clos... 340 5e-92 UniRef50_D1BAB3 Pseudouridine synthase n=1 Tax=Thermanaerovibrio... 339 6e-92 UniRef50_Q13E92 Pseudouridine synthase n=28 Tax=Alphaproteobacte... 339 7e-92 UniRef50_C6BSG2 Pseudouridine synthase, RluA family n=1 Tax=Desu... 337 3e-91 UniRef50_Q4FN11 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q4... 337 4e-91 UniRef50_C8S0A2 Pseudouridine synthase n=1 Tax=Rhodobacter sp. S... 336 4e-91 UniRef50_B6BTS8 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 336 5e-91 UniRef50_P59838 Ribosomal large subunit pseudouridine synthase D... 336 5e-91 UniRef50_B7GLK3 Pseudouridine synthase n=11 Tax=Bacillaceae RepI... 336 9e-91 UniRef50_Q2SK59 Pseudouridine synthase n=3 Tax=Gammaproteobacter... 335 1e-90 UniRef50_Q492Q1 Pseudouridine synthase n=2 Tax=Candidatus Blochm... 335 1e-90 UniRef50_C4XSN0 Ribosomal large subunit pseudouridine synthase D... 335 1e-90 UniRef50_Q2NIN6 Pseudouridine synthase n=4 Tax=Candidatus Phytop... 334 2e-90 UniRef50_Q1MQ60 Pseudouridylate synthases, 23S RNA-specific n=1 ... 334 2e-90 UniRef50_A6GP31 Pseudouridine synthase n=1 Tax=Limnobacter sp. M... 334 2e-90 UniRef50_Q0F3G4 Pseudouridine synthase n=1 Tax=Mariprofundus fer... 334 2e-90 UniRef50_D2L0S2 Pseudouridine synthase, RluA family n=1 Tax=Desu... 334 3e-90 UniRef50_C0QV86 Pseudouridine synthase n=2 Tax=Brachyspira RepID... 334 3e-90 UniRef50_Q0F3G2 Possible pseudouridine synthase n=1 Tax=Mariprof... 333 5e-90 UniRef50_D1U4S9 Pseudouridine synthase, RluA family n=1 Tax=Desu... 333 6e-90 UniRef50_A6NQQ9 Pseudouridine synthase n=1 Tax=Bacteroides capil... 333 6e-90 UniRef50_Q2IJ40 Pseudouridine synthase n=7 Tax=Cystobacterineae ... 332 8e-90 UniRef50_Q5PAD0 Pseudouridine synthase n=5 Tax=Anaplasma RepID=Q... 332 9e-90 UniRef50_A8MF48 Pseudouridine synthase n=12 Tax=Clostridiaceae R... 332 1e-89 UniRef50_Q8K9E9 Ribosomal large subunit pseudouridine synthase D... 332 1e-89 UniRef50_B0U5V6 Pseudouridine synthase n=7 Tax=Xylella fastidios... 332 1e-89 UniRef50_C0GNZ6 Pseudouridine synthase, RluA family n=1 Tax=Desu... 332 1e-89 UniRef50_C6CWL6 Pseudouridine synthase n=2 Tax=Paenibacillus Rep... 332 1e-89 UniRef50_D1AV01 Pseudouridine synthase n=2 Tax=Bacteria RepID=D1... 331 1e-89 UniRef50_C1ZB48 Pseudouridine synthase, RluA family n=1 Tax=Plan... 331 2e-89 UniRef50_A9IIW7 Pseudouridine synthase n=5 Tax=Bordetella RepID=... 331 2e-89 UniRef50_C7LWM1 Pseudouridine synthase, RluA family n=1 Tax=Desu... 330 3e-89 UniRef50_Q2RQY9 Pseudouridine synthase n=3 Tax=Alphaproteobacter... 330 5e-89 UniRef50_P54604 Uncharacterized RNA pseudouridine synthase yhcT ... 329 1e-88 UniRef50_B5JUW4 Pseudouridine synthase n=1 Tax=gamma proteobacte... 328 1e-88 UniRef50_C9M7B4 Pseudouridine synthase n=1 Tax=Jonquetella anthr... 328 1e-88 UniRef50_Q6MGX8 Pseudouridine synthase n=1 Tax=Bdellovibrio bact... 328 2e-88 UniRef50_B8J173 Pseudouridine synthase, RluA family n=2 Tax=Desu... 328 2e-88 UniRef50_C8PW17 Pseudouridine synthase n=5 Tax=Moraxellaceae Rep... 328 2e-88 UniRef50_B8FTI5 Pseudouridine synthase n=2 Tax=Desulfitobacteriu... 328 2e-88 UniRef50_B1ZYX0 Pseudouridine synthase n=4 Tax=Verrucomicrobia R... 328 2e-88 UniRef50_Q0AFD5 Pseudouridine synthase n=3 Tax=Nitrosomonas RepI... 328 2e-88 UniRef50_D1N7N8 Pseudouridine synthase, RluA family n=1 Tax=Vict... 328 2e-88 UniRef50_A1HR26 Pseudouridine synthase, RluA family n=1 Tax=Ther... 328 2e-88 UniRef50_A5WCP4 Pseudouridine synthase n=15 Tax=Moraxellaceae Re... 328 2e-88 UniRef50_UPI0001C42CC7 hypothetical protein BpOF4_01845 n=1 Tax=... 327 3e-88 UniRef50_A6TSZ4 Pseudouridine synthase n=1 Tax=Alkaliphilus meta... 327 3e-88 UniRef50_Q14NK8 Probable pseudouridine synthase d protein n=1 Ta... 325 1e-87 UniRef50_A7H6D3 Pseudouridine synthase n=6 Tax=Cystobacterineae ... 325 1e-87 UniRef50_B0K860 Pseudouridine synthase n=11 Tax=Thermoanaerobact... 324 3e-87 UniRef50_C8X1I9 Pseudouridine synthase, RluA family n=1 Tax=Desu... 324 3e-87 UniRef50_C6LL16 Pseudouridine synthase n=3 Tax=Clostridiales Rep... 324 3e-87 UniRef50_Q5ZT70 Pseudouridine synthase n=5 Tax=Legionella RepID=... 323 6e-87 UniRef50_C7MN62 Pseudouridine synthase n=8 Tax=Coriobacteriaceae... 323 6e-87 UniRef50_B3DV48 Pseudouridine synthase n=1 Tax=Methylacidiphilum... 323 7e-87 UniRef50_B2KBB0 Pseudouridine synthase n=1 Tax=Elusimicrobium mi... 322 9e-87 UniRef50_Q2GGY1 Pseudouridine synthase n=13 Tax=Rickettsiales Re... 322 1e-86 UniRef50_B8CWB7 Pseudouridine synthase n=1 Tax=Halothermothrix o... 321 2e-86 UniRef50_B0TWR8 Pseudouridine synthase n=19 Tax=Francisella RepI... 321 2e-86 UniRef50_C2D7A7 Pseudouridine synthase n=1 Tax=Atopobium vaginae... 321 2e-86 UniRef50_B5ZBC1 RluA n=15 Tax=Ureaplasma RepID=B5ZBC1_UREU1 320 5e-86 UniRef50_C0Z877 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 319 6e-86 UniRef50_C4XFS9 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=... 319 7e-86 UniRef50_C0E4Q3 Pseudouridine synthase n=2 Tax=Corynebacterium m... 319 8e-86 UniRef50_Q28US1 Pseudouridine synthase n=43 Tax=Rhodobacterales ... 319 8e-86 UniRef50_C8NZX3 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 319 9e-86 UniRef50_C2W5F3 Pseudouridine synthase n=4 Tax=Bacillus RepID=C2... 319 1e-85 UniRef50_B1H0R5 Pseudouridine synthase n=1 Tax=uncultured Termit... 318 1e-85 UniRef50_D2RBY1 Pseudouridine synthase, RluA family n=1 Tax=Gard... 318 1e-85 UniRef50_C0ZCK6 Pseudouridine synthase n=1 Tax=Brevibacillus bre... 318 2e-85 UniRef50_A5EXY5 Pseudouridine synthase n=2 Tax=Cardiobacteriacea... 318 2e-85 UniRef50_B7HGW1 Pseudouridine synthase n=52 Tax=Bacillales RepID... 318 2e-85 UniRef50_A5INM9 Pseudouridine synthase n=7 Tax=Thermotogaceae Re... 317 3e-85 UniRef50_C1FEQ4 Predicted protein n=2 Tax=Micromonas RepID=C1FEQ... 317 3e-85 UniRef50_A6CF60 Pseudouridine synthase n=1 Tax=Planctomyces mari... 316 5e-85 UniRef50_C1CWT3 Pseudouridine synthase n=1 Tax=Deinococcus deser... 315 1e-84 UniRef50_C6JBH1 Pseudouridine synthase n=1 Tax=Ruminococcus sp. ... 315 1e-84 UniRef50_Q2G4F0 Pseudouridine synthase n=12 Tax=Alphaproteobacte... 315 1e-84 UniRef50_A3VN52 Ribosomal large subunit pseudouridine synthase C... 315 2e-84 UniRef50_C7GZW0 Pseudouridine synthase n=1 Tax=Eubacterium saphe... 314 2e-84 UniRef50_B8GX34 Pseudouridine synthase n=7 Tax=Caulobacteraceae ... 314 2e-84 UniRef50_A9MGU8 Pseudouridine synthase n=1 Tax=Salmonella enteri... 314 2e-84 UniRef50_UPI0001C37137 ribosomal large subunit pseudouridine syn... 314 2e-84 UniRef50_A1AVB5 Pseudouridine synthase n=2 Tax=sulfur-oxidizing ... 314 3e-84 UniRef50_B7GAM3 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 313 4e-84 UniRef50_Q211J3 Pseudouridine synthase n=81 Tax=Alphaproteobacte... 313 4e-84 UniRef50_A5ZUU7 Pseudouridine synthase n=1 Tax=Ruminococcus obeu... 313 4e-84 UniRef50_A4J479 Pseudouridine synthase n=1 Tax=Desulfotomaculum ... 313 5e-84 UniRef50_Q6Q916 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q6... 313 5e-84 UniRef50_A0Z298 Pseudouridine synthase n=1 Tax=marine gamma prot... 313 6e-84 UniRef50_A4J9H9 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 313 6e-84 UniRef50_A5IZB6 Pseudouridine synthase n=4 Tax=Mycoplasma RepID=... 313 6e-84 UniRef50_D2M2K8 Pseudouridine synthase, RluA family n=1 Tax=Baci... 313 7e-84 UniRef50_A8F4Z7 Pseudouridine synthase n=2 Tax=Thermotogaceae Re... 313 7e-84 UniRef50_A4J1I1 Pseudouridine synthase n=1 Tax=Desulfotomaculum ... 312 9e-84 UniRef50_Q67N67 Pseudouridine synthase n=1 Tax=Symbiobacterium t... 312 1e-83 UniRef50_B3QB01 Pseudouridine synthase n=3 Tax=Rhodopseudomonas ... 312 1e-83 UniRef50_A8Z5T0 Pseudouridine synthase n=3 Tax=Candidatus Sulcia... 311 2e-83 UniRef50_C7MES4 Pseudouridine synthase, RluA family n=5 Tax=Acti... 311 3e-83 UniRef50_B0S119 Pseudouridine synthase n=2 Tax=Finegoldia magna ... 310 5e-83 UniRef50_C5RBB6 23S rRNA pseudouridylate synthase RluD n=1 Tax=W... 309 6e-83 UniRef50_D2ELJ1 Pseudouridine synthase n=1 Tax=Pediococcus acidi... 309 6e-83 UniRef50_O31613 Uncharacterized RNA pseudouridine synthase yjbO ... 309 8e-83 UniRef50_A8RHQ2 Pseudouridine synthase n=2 Tax=Clostridium RepID... 309 1e-82 UniRef50_Q63E77 Pseudouridine synthase n=73 Tax=Bacillaceae RepI... 308 1e-82 UniRef50_Q0ANT2 Pseudouridine synthase n=2 Tax=Hyphomonadaceae R... 308 2e-82 UniRef50_A8IAL9 Pseudouridine synthase n=2 Tax=Xanthobacteraceae... 308 3e-82 UniRef50_D1Y726 Ribosomal large subunit pseudouridine synthase D... 307 3e-82 UniRef50_B9ZR86 Pseudouridine synthase, RluA family n=1 Tax=Thio... 307 3e-82 UniRef50_B8I750 Pseudouridine synthase, RluA family n=2 Tax=Clos... 307 3e-82 UniRef50_B1XXM0 Pseudouridine synthase n=6 Tax=Burkholderiales R... 307 4e-82 UniRef50_C8PT91 Ribosomal large subunit pseudouridine synthase D... 307 4e-82 UniRef50_B5Y8D7 Pseudouridine synthase n=1 Tax=Coprothermobacter... 307 5e-82 UniRef50_A9GBV3 Pseudouridine synthase n=1 Tax=Sorangium cellulo... 306 5e-82 UniRef50_Q1D114 Pseudouridine synthase, RluA family n=6 Tax=Cyst... 306 6e-82 UniRef50_C6VRD0 Pseudouridylate synthase n=4 Tax=Lactobacillus R... 306 8e-82 UniRef50_B2IK20 Pseudouridine synthase n=2 Tax=Beijerinckiaceae ... 306 8e-82 UniRef50_B0PEI9 Pseudouridine synthase n=5 Tax=Bacteria RepID=B0... 306 9e-82 UniRef50_C4PNG9 Ribosomal large subunit pseudouridine synthase D... 305 1e-81 UniRef50_Q8ERS8 Pseudouridine synthase n=2 Tax=Bacillaceae RepID... 305 1e-81 UniRef50_Q38VN9 Pseudouridine synthase n=1 Tax=Lactobacillus sak... 304 2e-81 Sequences not found previously or not previously below threshold: UniRef50_A4RT55 Predicted protein (Fragment) n=3 Tax=Chlorophyta... 315 1e-84 >UniRef50_Q8ZQ16 Ribosomal large subunit pseudouridine synthase C n=110 Tax=Gammaproteobacteria RepID=RLUC_SALTY Length = 319 Score = 417 bits (1072), Expect = e-115, Method: Composition-based stats. Identities = 311/319 (97%), Positives = 314/319 (98%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 MKTETPSVKIVAI ADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL Sbjct: 1 MKTETPSVKIVAIAADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS Sbjct: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 Query: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV Sbjct: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 RGQWQSHVK+VQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR Sbjct: 181 RGQWQSHVKTVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVHTQYAGHPIAFDDRYGDREFD+QLTEAGTGL RLFLHAAALKFTHPGTGEVMRI Sbjct: 241 THQIRVHTQYAGHPIAFDDRYGDREFDQQLTEAGTGLKRLFLHAAALKFTHPGTGEVMRI 300 Query: 301 EAPMDEGLKRCLQKLRNAR 319 EAPMD LKRCLQ LRNA+ Sbjct: 301 EAPMDNALKRCLQVLRNAK 319 >UniRef50_B9Y836 Pseudouridine synthase n=3 Tax=Firmicutes RepID=B9Y836_9FIRM Length = 307 Score = 407 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 102/320 (31%), Positives = 154/320 (48%), Gaps = 24/320 (7%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 +I+ + + G R+D +L T + +S +++ + VR++ +K YK++AGDE+ Sbjct: 2 ETRILIVEEQDQGVRLDKYLSTAMDDCSRSRAQQLIDEEAVRIDDLPVKNSYKVKAGDEI 61 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 + E + +A ++YED ++V+NKP G VH G G + Sbjct: 62 EVTLPEEEALE--------AQPQEMALNVVYEDHDVIVINKPKGLVVHPGPGNPDHTLVN 113 Query: 127 LRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 +VHR+D+DTSG+++ K +A +SL +QL EK + Y AL Sbjct: 114 GLLWHCHDLSGINGVLRPGIVHRIDKDTSGLIVACKNDNAHQSLAKQLAEKTAGRQYYAL 173 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTG 239 V G ++ AP+ ++ + V + +P+ T FKV ER+ TLV C TG Sbjct: 174 VHGVINHEYGTIDAPIGRDEKDRQKMAVT-EKNSRPAITHFKVVERFDNYTLVSCRLETG 232 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RTHQIRVH QY G PI D +Y R+ LHA L FTHP TGE M Sbjct: 233 RTHQIRVHMQYIGFPIVGDPKYSLRK--------TLPTQGQMLHAYQLSFTHPSTGERMT 284 Query: 300 IEAPMDEGLKRCLQKLRNAR 319 EAP+ + L +LR R Sbjct: 285 FEAPLPPEFEALLTQLRQER 304 >UniRef50_Q3ABZ7 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q3ABZ7_CARHZ Length = 305 Score = 403 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 100/317 (31%), Positives = 158/317 (49%), Gaps = 26/317 (8%) Query: 10 IVAITADEAGQRIDNFLRTQLK-GVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 V + ++ +G R+D FL Q + + +S I +++ +G+V VN K YK+ G+ + + Sbjct: 6 KVVVNSEYSGLRLDKFLAEQEELELSRSFIKKLIEEGKVTVNGLHRKASYKVRGGEIIAV 65 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 E K + I+YED+ ++V+NK +G VH G G + Sbjct: 66 LLPPPRE--------LSVKPEEIPLDIVYEDEDLVVVNKKAGMVVHPAEGNWDGTLVNAL 117 Query: 129 ALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 +VHRLD+DTSG+L+VAK A +SL EQ++EK ++Y +V Sbjct: 118 LYHCQNLSGIGGVLRPGIVHRLDKDTSGLLVVAKNDLAHQSLAEQIKEKKAVREYWTIVH 177 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY-AFATLVRCSPVTGR 240 G ++ + P+ ++ + V GK ++T +KV E + TL++ +TGR Sbjct: 178 GYLKNKEGIIDLPIGRHPRDRQKMAVV--SNGKTAQTVYKVLEEFNKGFTLIQAKLLTGR 235 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH Y GHP+ D +YG + G+ R LHA L F HP +GE++ Sbjct: 236 THQIRVHFSYLGHPVLGDPKYGHQNNP-------FGVKRQMLHAIKLSFIHPRSGELLEF 288 Query: 301 EAPMDEGLKRCLQKLRN 317 AP+ E +R L KLR Sbjct: 289 TAPLPEDFQRVLAKLRG 305 >UniRef50_C9KPZ8 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KPZ8_9FIRM Length = 308 Score = 393 bits (1011), Expect = e-108, Method: Composition-based stats. Identities = 100/310 (32%), Positives = 153/310 (49%), Gaps = 22/310 (7%) Query: 14 TADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRV 73 TAD+ G+R+D FL + ++ + +++ +G+ V+ + K YKL+AG++V Sbjct: 9 TADQDGERLDRFLTRMEPTLSRAHVQKVIAEGQALVSGRVRKANYKLQAGEKVTFHLPE- 67 Query: 74 AEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR-- 131 P + ILYED I+V+NK G VH +G+ G + Sbjct: 68 -------AKPVEILPEDIPLDILYEDSDIIVINKARGMVVHPATGIYTGTLVNALLYHCK 120 Query: 132 -----PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 +VHRLD+DTSGV++ AK +A L EQ+R K + Y A+V G + Sbjct: 121 DLSGINGEIRPGIVHRLDKDTSGVMVAAKNDAAHLDLAEQIRTKAAHRIYRAIVCGNIRE 180 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 ++ + ++ + + V + GKP+ T F+V ER+ TLV C TGRTHQIRV Sbjct: 181 EAGVIKGDIGRHPTDRKKMAI-VHEHGKPAVTHFRVLERFGAYTLVECRLETGRTHQIRV 239 Query: 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDE 306 H GHP+ D +YG R+ + LH+ L THP T EVM AP+ E Sbjct: 240 HMASIGHPVLGDPKYGPRK------ACPFAIKGQALHSLQLTLTHPRTREVMTFTAPLPE 293 Query: 307 GLKRCLQKLR 316 +++ L+ LR Sbjct: 294 DMEKILKALR 303 >UniRef50_B9L028 Pseudouridine synthase n=2 Tax=Thermomicrobia (class) RepID=B9L028_THERP Length = 322 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 102/314 (32%), Positives = 170/314 (54%), Gaps = 21/314 (6%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + I+ E G+R+D + +++ G+ +S + +++++G + VN + KP ++ GD + + Sbjct: 13 LQISEREHGERLDKLIASRVTGMSRSFVQQLMKRGAILVNGEPCKPAQRVRYGDRLEVYL 72 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG-LRA 129 V P + L ++YEDD I+V +KP G H G G + L+A Sbjct: 73 PPVE-------PPTDLEPEFLPIPVIYEDDDIIVFDKPPGIVTHPAPGHEHGTLVNALKA 125 Query: 130 LRPE-----ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQW 184 +RP+ + +VHRLD+DTSG+L+VAK +A +L EQ + + + K Y ALV G Sbjct: 126 IRPDLQVQPSHRPGIVHRLDKDTSGLLVVAKTEAARLALLEQWQSRSVVKKYTALVHGVV 185 Query: 185 QSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQI 244 + ++ AP+ ++ ++ + V G+P+ T F+V ER+ ATL+ + TGRTHQI Sbjct: 186 EPDSGTIDAPISRDPVERTKMAVV--SWGRPAITHFRVLERFRCATLLDVTIETGRTHQI 243 Query: 245 RVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPM 304 RVH + GHP+ D +YG + R FLHA L+F HP TG+ + +E P+ Sbjct: 244 RVHCAFIGHPVVGDSQYGGHR------PFCVPVPRQFLHARYLRFVHPTTGQAIELETPL 297 Query: 305 DEGLKRCLQKLRNA 318 L+ L+ LR+ Sbjct: 298 PYDLRTVLEALRHC 311 >UniRef50_B0TGQ0 Pseudouridine synthase n=44 Tax=Bacteria RepID=B0TGQ0_HELMI Length = 369 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 100/324 (30%), Positives = 156/324 (48%), Gaps = 26/324 (8%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 ++ P + + +T EA R+D +L + +S +++G V ++ +K Y+L Sbjct: 29 ESRRPELVRLTVTPAEADSRVDVWLVQKGLVPSRSHGQNWIKEGLVTLDGGPLKANYRLR 88 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 GD + + P E + I+++D I V+NKP+G VH G Sbjct: 89 PGDVIEVAPPAPEAVEIL--------PEDIPLEIIFQDADIAVINKPAGLVVHPAEGHWS 140 Query: 122 GVIEGLRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQK 174 G + +VHR+D+DTSG+L+VAK A L EQ+++ +++ Sbjct: 141 GTLVNALLYHIKDLSGINGELRPGIVHRIDKDTSGLLVVAKNDRAHIHLTEQVKDHRVRR 200 Query: 175 DYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY--AFATLV 232 +YLA+V G + V+AP+ ++ V GK + T F+V RY +L+ Sbjct: 201 EYLAVVHGVIGAETGRVEAPIGRDPKDRQRMAVIA--GGKSAITHFRVLARYPEQGFSLL 258 Query: 233 RCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHP 292 C TGRTHQIRVH + GHP+A D +YG R +A GL LHA L+F HP Sbjct: 259 HCRLETGRTHQIRVHLAHIGHPVAGDPKYGPR-------KAAFGLTGQALHAWKLEFVHP 311 Query: 293 GTGEVMRIEAPMDEGLKRCLQKLR 316 +GE MR +A E + LQ L+ Sbjct: 312 RSGEPMRFQADPPEPFVQVLQALQ 335 >UniRef50_Q82WZ5 Ribosomal large subunit pseudouridine synthase D n=2 Tax=Nitrosomonas RepID=RLUD_NITEU Length = 344 Score = 390 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 100/320 (31%), Positives = 165/320 (51%), Gaps = 14/320 (4%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 E + + + + AG R+D L L +S + + + V V+ + K+ Sbjct: 25 SQENENTIELTVPDNLAGLRLDQALAQLLPQWSRSRLQGWIEQKCVSVDSAAATCKQKVW 84 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 G+ +R+ + + + A+ IL+EDDH+++++KP+G VH G+G Sbjct: 85 GGESIRVIAGQTENDQSH-------QAEAIPLKILFEDDHLIIIDKPAGLVVHPGNGNWH 137 Query: 122 GVIEGLRALRP----EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 G + + +VHRLD+DT+G+L+VAK A L QL+++ +++ YL Sbjct: 138 GTLLNALLNHAPQLSQVPRAGIVHRLDKDTTGLLVVAKTIEAQFDLARQLQQRTVKRHYL 197 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPV 237 ALV G+ + V AP+ ++ + V Q GKP+ T ++V E++ +TL+ CS Sbjct: 198 ALVLGKLEKD-GVVDAPIGRHPIHRTRMAVV--QNGKPARTHYRVLEKFTASTLLHCSLE 254 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQIRVH GHP+A D YG D +A L R LHA L+ THP +G++ Sbjct: 255 TGRTHQIRVHLLSIGHPLAGDPVYGRTSPDPSTADAVVRLPRQALHAWQLELTHPHSGQI 314 Query: 298 MRIEAPMDEGLKRCLQKLRN 317 + E+P+ + + LQ +RN Sbjct: 315 LLWESPLPDDMAALLQAIRN 334 >UniRef50_P44433 Ribosomal large subunit pseudouridine synthase C n=22 Tax=Gammaproteobacteria RepID=RLUC_HAEIN Length = 322 Score = 386 bits (994), Expect = e-106, Method: Composition-based stats. Identities = 227/318 (71%), Positives = 269/318 (84%), Gaps = 2/318 (0%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 K SVK++ I+ DE+GQRIDN+L +LKGVPKS+IYRI+RKGEVRVNK RIKPEYKL+ Sbjct: 7 KIINSSVKMLTISEDESGQRIDNYLLAKLKGVPKSLIYRIVRKGEVRVNKGRIKPEYKLQ 66 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 GD VRIPPVRVAE+ + +S +L KVAAL + IL+EDD +++LNKPSG AVHGGSGL+F Sbjct: 67 TGDVVRIPPVRVAEKNDAPISKNLNKVAALENQILFEDDCLIILNKPSGIAVHGGSGLNF 126 Query: 122 GVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 GVIE LRALRPEARFLELVHRLDRDTSG+LL+AKKRSALR+LHEQLR K +QKDYLALVR Sbjct: 127 GVIEALRALRPEARFLELVHRLDRDTSGILLIAKKRSALRNLHEQLRVKTVQKDYLALVR 186 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 GQWQSH+K +QA LLKN L SGERIVRVS++GKPSETRF +EERY ATLV+ SPVTGRT Sbjct: 187 GQWQSHIKVIQASLLKNELSSGERIVRVSEQGKPSETRFSIEERYINATLVKASPVTGRT 246 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVHTQYAGHPIA DD+YGD++FD+Q+ E GLNRLFLHA +++F HP GE +R Sbjct: 247 HQIRVHTQYAGHPIALDDKYGDKDFDKQMNE--LGLNRLFLHAFSIRFEHPKNGETLRFN 304 Query: 302 APMDEGLKRCLQKLRNAR 319 A +D +K LQKLR ++ Sbjct: 305 ASLDHQMKAILQKLRESK 322 >UniRef50_C4FYR8 Pseudouridine synthase n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FYR8_ABIDE Length = 326 Score = 386 bits (993), Expect = e-106, Method: Composition-based stats. Identities = 93/324 (28%), Positives = 153/324 (47%), Gaps = 30/324 (9%) Query: 5 TPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGD 64 + V +++ ++++G+RID +L +L +S + ++ +G+VRV K +K +K+ G Sbjct: 19 SDEVIELSVVSEDSGERIDKYLSGKLTEYSRSYLKGLIDEGKVRVEGKPVKSSFKVTEGI 78 Query: 65 EVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI 124 + I V E E + ILYED+ ++++NKP G VH +G G + Sbjct: 79 NISISIPPVKEAEII--------PENIPLDILYEDEDVILINKPKGMVVHPAAGHYTGTL 130 Query: 125 EGLRALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDY 176 +VHR+D DT+GV++ K + R + EQL+E +++ Y Sbjct: 131 VNALMYHCRDNLSGINGELRPGIVHRIDMDTTGVIIACKNDVSHRIIAEQLKEHSIKRKY 190 Query: 177 LALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY-----AFATL 231 A+V G ++ ++ + ++ + V +GKP+ T ++V Y Sbjct: 191 QAIVYGVFKDEEGRIEGSIGRSKTDRKKMAVI--PDGKPAVTHYRVIRNYTSPNGNNFAH 248 Query: 232 VRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTH 291 + C TGRTHQIRVH GHP+ D+ YG + L+ LHA L F H Sbjct: 249 IECELETGRTHQIRVHMTSIGHPLLGDEIYG-------AAKNPFKLDGQALHAEMLGFVH 301 Query: 292 PGTGEVMRIEAPMDEGLKRCLQKL 315 P TGE M AP+ E + L KL Sbjct: 302 PRTGEYMEFHAPLPEYFSKLLTKL 325 >UniRef50_D2BIX0 Pseudouridine synthase n=5 Tax=Dehalococcoides RepID=D2BIX0_DEHSV Length = 302 Score = 385 bits (991), Expect = e-106, Method: Composition-based stats. Identities = 106/318 (33%), Positives = 160/318 (50%), Gaps = 26/318 (8%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 VK + A+ G+R+D ++ + + +S I ++ G V+VN K KP KL+ GD + Sbjct: 2 PVKTRRLIAESDGERLDKYIAQKETDLSRSFIQALIDSGHVQVNGKTAKPSLKLKNGDTI 61 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-E 125 I E +P K + I+++D +L++NKP G VH G + Sbjct: 62 TI--------EISPETPPELKAEDIPLEIIFQDKDLLLINKPPGLTVHPAPGHPDHTLIN 113 Query: 126 GLRALRP------EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 G+ AL P + +VHRLD+DTSG+LLVAK R L +L Q +E+ ++K YL L Sbjct: 114 GVLALEPKMEDFDDPLRPGIVHRLDKDTSGLLLVAKNRETLANLSAQFKERTVRKYYLTL 173 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTG 239 V+G+ ++APL ++ + + V G+ + T +KV +L+ TG Sbjct: 174 VKGELHPAEGFIEAPLGRDPQN--RQKIAVVSNGRHARTGYKVLRYIQGYSLLEVKLETG 231 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RTHQIRVH GHP+A D YG +E T L R FLHA L FT P G+ + Sbjct: 232 RTHQIRVHFAAIGHPVAGDAIYGQKE---------TWLKRQFLHAHRLSFTLPSNGQTVE 282 Query: 300 IEAPMDEGLKRCLQKLRN 317 +P+ L+ L+ L N Sbjct: 283 FTSPLPPDLEETLKILEN 300 >UniRef50_B8FLB4 Pseudouridine synthase n=2 Tax=Bacteria RepID=B8FLB4_DESAA Length = 321 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 100/324 (30%), Positives = 153/324 (47%), Gaps = 19/324 (5%) Query: 6 PSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDE 65 + E GQR+D F+ K + ++ R++R+G V V+K KP Y L+ G+ Sbjct: 4 DQTYQFKVQNKEQGQRLDAFVPVHCKNLSRNACARLIRQGLVTVDKSVKKPSYVLKPGEM 63 Query: 66 VRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIE 125 V + + A + ILYED I+ +NKP G VH G S + Sbjct: 64 VSVTVPEPETADIVA--------QDMDLAILYEDRDIVAVNKPPGMVVHPAPGHSSNTLV 115 Query: 126 GLRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLA 178 + +VHRLD++TSGV+L AK +A L EQL ++ ++K YLA Sbjct: 116 NALLAHCKDLSGIGGVQRPGIVHRLDKETSGVILAAKNDAAHAGLSEQLAQRRVEKFYLA 175 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVT 238 L G + + PL ++ V +G+ + + + V+ER+ AT V+ T Sbjct: 176 LAHGVIKEDTGVIDLPLARHPSDRKRMHVSTPAKGREALSLWTVKERFLDATYVKVQIKT 235 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEA----GTGLNRLFLHAAALKFTHPGT 294 GRTHQIRVH HP+ D YG R+ +L + R LHA + FTHP T Sbjct: 236 GRTHQIRVHLAALHHPVIGDTVYGGRKKRGRLPASVLGKAPPPERQMLHAHIVSFTHPVT 295 Query: 295 GEVMRIEAPMDEGLKRCLQKLRNA 318 GE + + AP+ + + + L+ LR + Sbjct: 296 GEKLTLTAPLPQDMAQLLEALRES 319 >UniRef50_B2UL66 Pseudouridine synthase n=2 Tax=Verrucomicrobiaceae RepID=B2UL66_AKKM8 Length = 323 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 93/314 (29%), Positives = 140/314 (44%), Gaps = 23/314 (7%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + + R+D +L L + +S I +++ G+V VN KP+ + GD + + Sbjct: 3 LTTDDADGKIRLDQYLAAHLPELSRSRIQSLIKSGDVLVNGSPAKPKNPVSRGDSITVRI 62 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 P + + ILYED+ ++V+NK SG VH +G G I Sbjct: 63 PEPE--------PAEAQPQDIPLDILYEDEDVVVINKESGMVVHPAAGNPDGTIVNALLH 114 Query: 131 R-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 +VHRLD+DTSG L++AK A +SL Q + +K YLA+V+G Sbjct: 115 HCGDLSGIGGVERPGIVHRLDKDTSGCLVIAKNDGAHQSLTAQFAARSTEKRYLAVVQGI 174 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVE--ERYAFATLVRCSPVTGRT 241 +V + ++ + + V GK + T + + + ++LV C+ TGRT Sbjct: 175 PSQSSGTVFTHIGRHPVNRLKMAVVNPGSGKAAITDYDLLCADPSTDSSLVLCTLHTGRT 234 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVH Y GHP+ D Y + RL LHA L F HP TG+ M E Sbjct: 235 HQIRVHMLYLGHPLIGDPIYAKPARQKAKP------GRLMLHAWRLGFDHPRTGKRMDFE 288 Query: 302 APMDEGLKRCLQKL 315 AP+ LQ Sbjct: 289 APVPPEYTPWLQLF 302 >UniRef50_B8CWM0 Pseudouridine synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWM0_HALOH Length = 308 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 94/316 (29%), Positives = 149/316 (47%), Gaps = 23/316 (7%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 K+ ++++E G+RID +L K + +S I +++ +V VN + +K +K+ GD +R+ Sbjct: 6 KVYEVSSEEEGKRIDKYLSKLNKDLSRSYIQKLIDNDKVLVNGESVKRSFKVNRGDHIRL 65 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 + K + I+YED ILVLNK +G VH G + Sbjct: 66 IIPPPED--------SGIKPVEMDLDIIYEDKDILVLNKNAGLVVHPAPGNHENTLVNAL 117 Query: 129 ALRPEA-------RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 + +VHRLD+DTSGV+++AK + R L EQ +++ +K Y L++ Sbjct: 118 IAYCDNLSTISGVNRPGIVHRLDKDTSGVMVIAKNDISHRKLVEQFKQRKTKKYYRTLLK 177 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 G+ + AP+ ++ + V + K + T FKV E + + V TGRT Sbjct: 178 GELPYKEGKIDAPIGRDPHDRKKMAVT-RKNSKKAVTYFKVLEFFRDHSYVEVELKTGRT 236 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVH Y G P+ D YG + Q T R LHA L F HP + + + Sbjct: 237 HQIRVHFSYMGFPVVGDSIYGKKRNRLQAT-------RQLLHAYRLGFYHPRNDKWVEYK 289 Query: 302 APMDEGLKRCLQKLRN 317 A + + K+ L L N Sbjct: 290 ASLPDDFKKALDILEN 305 >UniRef50_Q2LWV4 Pseudouridine synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LWV4_SYNAS Length = 333 Score = 383 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 106/330 (32%), Positives = 164/330 (49%), Gaps = 23/330 (6%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKR-IKPEYK 59 MK P ++ +TA E+G R+D FL + G ++ + R++ G V ++ K I+ K Sbjct: 1 MKGVAP-LREYRVTATESGLRLDLFLASHESGFSRARLQRLIESGRVTISGKAAIRASQK 59 Query: 60 LEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGL 119 L GD V + EE +P + ILYED +LVL+KP+G VH +G Sbjct: 60 LRTGDIVML--------EEPPATPLELIPQDIPLSILYEDHDLLVLDKPAGLVVHPAAGH 111 Query: 120 SFGVIEGLRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGM 172 G + +VHRLD+DTSG+L+VAK +A + L Q ++ + Sbjct: 112 VSGTLVNALLFHCRDLAGIGGVMRPGIVHRLDKDTSGLLVVAKTDAAHQGLALQFKKHQV 171 Query: 173 QKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLV 232 K Y ALV G + + P+ ++ ++ + + S+ GK + TR+++ ER+ ATL+ Sbjct: 172 GKTYQALVYGDPREKTGQIDLPVGRHPVERKKMSTK-SRRGKEAATRWRIAERFGVATLL 230 Query: 233 RCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREF-----DRQLTEAGTGLNRLFLHAAAL 287 VTGRTHQIRVH GHP+ D YG + D + ++R LHAA L Sbjct: 231 NVDIVTGRTHQIRVHLAAIGHPVVGDAVYGSSKRATTLTDPAVKGRLKEMSRQALHAARL 290 Query: 288 KFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 FTHP T +++ AP+ ++ LR Sbjct: 291 SFTHPVTHKILEFHAPLPADMEDLCAFLRK 320 >UniRef50_Q9KQH0 Ribosomal large subunit pseudouridine synthase C n=59 Tax=Proteobacteria RepID=RLUC_VIBCH Length = 315 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 206/320 (64%), Positives = 241/320 (75%), Gaps = 7/320 (2%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 M V+ + I D AGQRIDNFLR QLK +PKS++YRILRKGEVRVNKKR+K EYKL Sbjct: 1 MNEIRTQVQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKL 60 Query: 61 EAGDEVRIPPVRVAEREEEAVSPH--LQKVAALADVILYEDDHILVLNKPSGTAVHGGSG 118 EAGD VR+PPV V +E E P L KVA L I+YEDDH+L+LNKPSGTAVHGGSG Sbjct: 61 EAGDVVRVPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSG 120 Query: 119 LSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLA 178 L FG IE LRALRP+ARFLELVHR+DRDTSG+LLVAKKRSALR L Q REK +QK Y A Sbjct: 121 LHFGAIEALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYA 180 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVT 238 LV G W + K V APLLKN + S IVRV+ GKPSETRF++ E++A ATLV+ SPVT Sbjct: 181 LVMGHWDAECKVVNAPLLKNEVNS---IVRVNPNGKPSETRFRILEKFAEATLVQASPVT 237 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM 298 GRTHQIRVHTQY GHPIA+DDRYGDR FD A G+ RLFLHAA ++F HP + + + Sbjct: 238 GRTHQIRVHTQYMGHPIAWDDRYGDRRFD--AYTAQFGIERLFLHAANIQFVHPASEKKL 295 Query: 299 RIEAPMDEGLKRCLQKLRNA 318 I AP++ L++ L K+R A Sbjct: 296 EIHAPLEAHLEQALTKMRQA 315 >UniRef50_Q9JVB6 Ribosomal large subunit pseudouridine synthase D n=39 Tax=Proteobacteria RepID=RLUD_NEIMA Length = 374 Score = 381 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 107/322 (33%), Positives = 163/322 (50%), Gaps = 16/322 (4%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 +ET + + + + AG R+D L L +S + +++G V VN K +P+ K+ Sbjct: 21 ASETENRIGLTVPLELAGGRLDAVLAKLLPDYSRSRLTLWIKEGAVIVNDKPSQPKDKMI 80 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 G+++R+ E +A I+YEDD ++V+NKP+G VH +G Sbjct: 81 GGEQIRVTVRPSEEN-------LAFVPEPMALDIVYEDDTVIVVNKPAGLVVHPAAGNWT 133 Query: 122 GVI-EGLRALRPEA---RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 G + GL A PE +VHRLD++TSG+++VAK A SL QL+E+ +++ Y Sbjct: 134 GTLLNGLLAHCPELSQIPRAGIVHRLDKETSGLMVVAKTLPAQNSLVWQLQERTVKRIYR 193 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPV 237 A+ G ++ + ++ + V V GKP+ T KV ERY + + CS Sbjct: 194 AVANGIVPFD-GKIETQIGRDPHNRLKMAV-VKFGGKPAVTHVKVLERYLAHSYIECSLE 251 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREF---DRQLTEAGTGLNRLFLHAAALKFTHPGT 294 TGRTHQIRVH + A HP+A D YG+ D + R LHA L FTHP + Sbjct: 252 TGRTHQIRVHMREANHPLAGDPVYGNPRHPCGDTVKEAVKSLGARQALHAYRLSFTHPES 311 Query: 295 GEVMRIEAPMDEGLKRCLQKLR 316 GE + EAP+ + + L LR Sbjct: 312 GETVSFEAPIPDDIYHLLSVLR 333 >UniRef50_A7HM17 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A7HM17_FERNB Length = 314 Score = 381 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 102/314 (32%), Positives = 157/314 (50%), Gaps = 21/314 (6%) Query: 11 VAITADEAGQRIDNFLRTQLKG-VPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 + +T+ E G R+D F+ + + ++ I R ++ GEV VN KP YK+++GD + + Sbjct: 3 IQVTSRENGWRLDKFVMEKTPEWISRTFIQRAIKNGEVLVNGTSKKPSYKVKSGDIITLN 62 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 E + I+YED ILV+NK G H + G I Sbjct: 63 APEAPE-------IPEILPEDIPLDIIYEDRDILVINKQPGIITHPIPSHTSGTIVNGVL 115 Query: 130 LR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 +VHRLD+DTSGV+++AK A +SL +Q +++ +K Y+ LV+G Sbjct: 116 YHCKDLQGIGGVLRPGIVHRLDKDTSGVMVIAKNDLAHQSLTKQFKDRLTEKLYICLVKG 175 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF-ATLVRCSPVTGRT 241 + ++ + +N + + V S+ GKP+ T +KV + A LV P TGRT Sbjct: 176 VPKRKEGDIEINIARNPVLRVKMTVTNSEYGKPALTHYKVVREFGDIAALVFAYPKTGRT 235 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVH +Y GHP+ D+ YG R + G+ R LHA +L F HP TGE ++ Sbjct: 236 HQIRVHMKYIGHPLMGDEVYG-----RAKEDEIFGIKRQMLHALSLSFYHPRTGEKVKFI 290 Query: 302 APMDEGLKRCLQKL 315 A + + K +QKL Sbjct: 291 AKIPQDFKEAIQKL 304 >UniRef50_A9BFW4 Pseudouridine synthase n=8 Tax=Thermotogaceae RepID=A9BFW4_PETMO Length = 319 Score = 381 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 97/317 (30%), Positives = 160/317 (50%), Gaps = 19/317 (5%) Query: 9 KIVAITADEAGQRIDNFLRTQLK-GVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 ++ + ++ +R+D ++ ++ + +++I + KG++ VN + KP YK++ GDE++ Sbjct: 4 RMYKVEREDEQKRLDIYIAQKMPIEISRNLIQNAITKGQITVNGSQKKPHYKVKQGDEIQ 63 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 I + E +E + ILYED+ ++V+NKP+G VH + G + Sbjct: 64 IDFHELVEETKE----ENILPENIPLNILYEDEELIVINKPAGLIVHPTPSIKTGTLVNA 119 Query: 128 RALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 + L +VHRLD++TSGVL+VAK + L ++ +E+ K YLA+ Sbjct: 120 LMHHVKDLDKTMQDPNRLGIVHRLDKETSGVLVVAKNAFSHHLLSKEFKERKTMKYYLAI 179 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF-ATLVRCSPVT 238 V G + + PL ++ + +R V GK + T +K + + ATLV T Sbjct: 180 VEGTLKEKEGEINLPLGRHPILRHKRAVVY--NGKEAITEYKTLKEFGDLATLVWIRLRT 237 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM 298 GRTHQIRVH +Y G+P+ D YG + ++ L + R LHA L F HP T E M Sbjct: 238 GRTHQIRVHFKYIGNPLIGDSLYGKNKIEKNLQ---IPVGRQMLHALKLGFYHPKTKEWM 294 Query: 299 RIEAPMDEGLKRCLQKL 315 AP+ + K L L Sbjct: 295 EFLAPLPDDFKNLLITL 311 >UniRef50_B1I3F8 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1I3F8_DESAP Length = 309 Score = 380 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 93/312 (29%), Positives = 149/312 (47%), Gaps = 23/312 (7%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + ++ R+D FL Q + ++ I +++ V VN + + +++ GD V + Sbjct: 7 YTVEEEDEQTRLDVFLAGQNPELSRARIQKLISLELVTVNGRPARASHRVRGGDCVELKV 66 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 + A+ + +ED +LV+NKP G VH G G + Sbjct: 67 PDPETPRI--------EPEAIPLEVCFEDPDVLVVNKPRGLVVHPAVGHYSGTLVNALLH 118 Query: 131 R-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 +VHRLDRDTSG+L+VAK +A +L QL+++ + + Y ALV G+ Sbjct: 119 HCRDLSGINGILRPGIVHRLDRDTSGLLMVAKNDAAHLALAGQLKDRAVLRRYTALVHGR 178 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 + +V AP+ ++ V + G+ + T ++V R+ +L+ + TGRTHQ Sbjct: 179 PRRETGTVDAPIGRHPRDRQRMAVTP-RSGRAARTHYRVVRRFDKFSLLELTLDTGRTHQ 237 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH + GHP+ D +YG + GL FLHA L F HP TGEV+ EAP Sbjct: 238 IRVHMAHVGHPLVGDLKYGHARPE-------LGLEGQFLHAGTLGFRHPRTGEVLVFEAP 290 Query: 304 MDEGLKRCLQKL 315 + L L++L Sbjct: 291 LPSELAAVLERL 302 >UniRef50_O50310 Uncharacterized RNA pseudouridine synthase Cpar_0723 n=13 Tax=Chlorobiaceae RepID=Y723_CHLP8 Length = 327 Score = 379 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 87/327 (26%), Positives = 155/327 (47%), Gaps = 27/327 (8%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 + ++ + RID +L Q++ + ++ + + +G V VN K +K Y++++ D + + Sbjct: 2 TLDVSKVQTPMRIDRYLTQQVENMTRNKVQAAIEEGRVLVNGKPVKSNYRVKSCDHIHLT 61 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 +R E + ILYEDD ++V++K +G VH G G + Sbjct: 62 FLRPPAPE--------LAPEDIPITILYEDDDLMVIDKEAGMVVHPAFGNWTGTLANAIL 113 Query: 130 LRPE---------ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 +VHRLD+DTSG++++AK +AL L Q + ++K Y A+V Sbjct: 114 HHLGKDADELDKTEMRPGIVHRLDKDTSGLIIIAKNPTALHKLARQFANRQVEKVYKAIV 173 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQE--GKPSETRFKVEERYAFATLVRCSPVT 238 G ++ +++ + ++ + GK + T ++V E + +L+ + T Sbjct: 174 WGVPKAESGTIKTNIGRSHKNRKVMANFPYEGAEGKHAITDYQVVEDLGYFSLMDVTLHT 233 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGD--------REFDRQLTEAGTGLNRLFLHAAALKFT 290 GRTHQIRVH Q+ GH I D+ YG + + ++R LHA L+F Sbjct: 234 GRTHQIRVHLQHLGHSILGDETYGGATPRTLPFSKSEPFTRNLLELMSRQALHAQTLRFR 293 Query: 291 HPGTGEVMRIEAPMDEGLKRCLQKLRN 317 P TGE + AP+ E ++ L+K+R Sbjct: 294 QPTTGEPLSFSAPLPEDMELVLEKIRT 320 >UniRef50_Q45826 Uncharacterized RNA pseudouridine synthase Caur_0901 n=5 Tax=Chloroflexi (class) RepID=Y901_CHLAA Length = 316 Score = 378 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 89/315 (28%), Positives = 153/315 (48%), Gaps = 24/315 (7%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 ++V + + +RID FL + + ++ + R++ +G V + + + + G +++ Sbjct: 15 RVVVVPPTQTAERIDRFLAGAMPDLSRAQVQRLIEQGFVLYDGRSPRASQPVRPGAVIQL 74 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 P + ++YED I V+NKP+G VH G G + Sbjct: 75 TIP--------PPIPTELVAEPIPLDVVYEDADIAVINKPAGMVVHPAPGHPRGTLVNAL 126 Query: 129 ALR------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 R +VHRLDRDTSG+L++A+ A+RSL +Q + + M+K Y ALV G Sbjct: 127 LARYPDLAIGGELRPGIVHRLDRDTSGLLVIARHDQAMRSLVDQQQARRMRKIYQALVIG 186 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 + ++ AP+ ++ V +G+P+ T +++ + + +L+ TGRTH Sbjct: 187 RPPE-TGTIDAPIGRDPRDRLRMAVV--PDGRPARTHYRLLDTFGDYSLLEVQLETGRTH 243 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH ++ G+PI D YG R + L+R FLHAA L HP +G A Sbjct: 244 QIRVHLRHLGYPIVGDPVYGPRR-------SHLHLSRQFLHAAYLGLVHPRSGRWQEFTA 296 Query: 303 PMDEGLKRCLQKLRN 317 P+ L+ L++L++ Sbjct: 297 PLPADLQIVLRQLQD 311 >UniRef50_D1PCC3 Pseudouridine synthase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PCC3_9BACT Length = 387 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 96/327 (29%), Positives = 149/327 (45%), Gaps = 26/327 (7%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 V + A++ RID +L ++ ++ I + G + VN K +K YK+ D V + Sbjct: 55 KVQVDANQDPVRIDKYLADKMAYQSRNRIQQAADAGFIHVNGKPVKSNYKVRPNDLVTLM 114 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 R K +A ++YEDD ++V+NK +G VH G+G G + A Sbjct: 115 LDRPRHETS-------IKPEEIAINVVYEDDQLMVVNKEAGMVVHPGAGNFHGTLIQAVA 167 Query: 130 LR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 + LVHR+D+DTSG+L+VAK +A +L +Q K + Y ALV Sbjct: 168 WHLRDMPEFDANDPEVGLVHRIDKDTSGLLVVAKTPTAKNALGKQFFNKTTHRSYNALVW 227 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQE--GKPSETRFKVEERYAFATLVRCSPVTG 239 G ++ + ++ V GK + T +KV ER+ + TLV+C TG Sbjct: 228 GNIVEDEGRIEGNIGRDPKNRLRMKVFDPDSGIGKTAVTHYKVLERFGYTTLVQCVLETG 287 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGL---------NRLFLHAAALKFT 290 RTHQIR H ++ GHP+ D+ YG E R + R LHA L F Sbjct: 288 RTHQIRAHMKHIGHPLFMDETYGGTEILRGQRSSSYKAFIQNCFKLCPRQALHAKTLGFV 347 Query: 291 HPGTGEVMRIEAPMDEGLKRCLQKLRN 317 HP T + M ++ ++ ++K R Sbjct: 348 HPTTKQQMDFDSEWPNDFRQLIEKWRG 374 >UniRef50_C7NAV5 Pseudouridine synthase n=5 Tax=Fusobacteriaceae RepID=C7NAV5_LEPBD Length = 326 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 92/320 (28%), Positives = 155/320 (48%), Gaps = 27/320 (8%) Query: 3 TETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEA 62 + + + + + +EAG RID FL +L + ++ I ++++ + VN+K+ KP YK+E Sbjct: 18 ENSENEENIVVLKEEAGSRIDKFLSERL-ELTRTRIQQLIKDENILVNEKKTKPAYKIEE 76 Query: 63 GDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG 122 D +++ + E K + I+YED+ + V+NK +G VH +G G Sbjct: 77 NDTIKVVIPELETVEI--------KPENIDIEIIYEDNDLAVINKKAGIVVHPANGHYSG 128 Query: 123 VIEGLRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKD 175 + +VHRLD+DTSG+L++AK A L + +K ++K Sbjct: 129 TLVNAILYHIKDLSGINGEIRPGIVHRLDKDTSGLLIIAKNDKAHLKLSQMFHDKTVKKI 188 Query: 176 YLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVS-QEGKPSETRFKVEERYAFATLVRC 234 YLA+++G+ + + ++ + V GK + T ++V + TLV+ Sbjct: 189 YLAILKGKLNQKSGRIVTQIGRDKNDRKKMTVINDLNSGKTAITNYEVISQTEKFTLVKV 248 Query: 235 SPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGT 294 TGRTHQIRVH ++ G+PI D YG + + R LHA L+F HP T Sbjct: 249 HIETGRTHQIRVHMKHLGYPILGDSVYGRTDTE----------KRQMLHAYKLEFQHPIT 298 Query: 295 GEVMRIEAPMDEGLKRCLQK 314 E + A + E K+ L+K Sbjct: 299 EENLEFIAKLPEDFKKALKK 318 >UniRef50_Q5QZ45 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q5QZ45_IDILO Length = 315 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 204/315 (64%), Positives = 251/315 (79%), Gaps = 3/315 (0%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 MKT V+ ++A+E+GQRIDNFL QL+GVPKS++YRI+RKGEVR NKKRIKP+YKL Sbjct: 1 MKTIQQEVRWHTVSAEESGQRIDNFLIAQLRGVPKSLVYRIVRKGEVRANKKRIKPDYKL 60 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 + GD +RIPPV+V ER + S +L++VAAL ILYEDD ++++NKPSG AVHGGSGL Sbjct: 61 KEGDLIRIPPVKVNERPDLP-SANLEQVAALEHAILYEDDALMLINKPSGVAVHGGSGLQ 119 Query: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 FG+IEGLRALRP+ + LELVHR+DRDTSG+LLVAKKRS LRSLHEQLR K M K YLALV Sbjct: 120 FGLIEGLRALRPKEKSLELVHRIDRDTSGLLLVAKKRSVLRSLHEQLRNKEMNKQYLALV 179 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 RGQWQ V+SV+APL KN L+SGERIVRV EGK S TRF++++RY TLV SPVTGR Sbjct: 180 RGQWQKRVRSVEAPLKKNTLKSGERIVRVDAEGKASLTRFRIQQRYKEGTLVEASPVTGR 239 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH +AGHPIA D +YGD +FD + + GLNRLFLHA L+F HP TG+ + Sbjct: 240 THQIRVHALHAGHPIAKDPKYGDTDFDNTM--SRLGLNRLFLHAWQLRFLHPVTGKEVAF 297 Query: 301 EAPMDEGLKRCLQKL 315 EAP+D+ L++ L++L Sbjct: 298 EAPLDDNLQQTLKQL 312 >UniRef50_Q3A0C2 Pseudouridine synthase n=13 Tax=Bacteria RepID=Q3A0C2_PELCD Length = 326 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 93/320 (29%), Positives = 146/320 (45%), Gaps = 23/320 (7%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 + + + +R+D FL QL + +S + +++ G V ++ KP KL+ G+ + + Sbjct: 6 TLCFGRERSPERLDRFLVEQLPELSRSQLKKLIDDGRVLLDGAAAKPGSKLKGGETLTVD 65 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 SP + VILYED H++V++KP G VH G G + Sbjct: 66 VP--------DPSPAEAVSEDIPLVILYEDRHLIVIDKPPGMVVHPAPGHYQGTLVNALL 117 Query: 130 LR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 +VHRLD+DTSGV++ K SA +SL Q + + + Y+AL+ G Sbjct: 118 HHCQDLSGIGGELRPGIVHRLDKDTSGVMVATKTDSAHQSLAAQFKAHSITRRYIALIHG 177 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF--ATLVRCSPVTGR 240 S+ P+ ++ + + G+ + T ++V R+ TLV + TGR Sbjct: 178 VLTGDRGSIDRPIGRHPTHRKKMSTTC-RTGRHAVTHWRVLRRFDDDRLTLVELALETGR 236 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREF-----DRQLTEAGTGLNRLFLHAAALKFTHPGTG 295 THQIRVH HP+ D YG D QL + L R LHA L F HP TG Sbjct: 237 THQIRVHFSEQQHPLLGDPVYGGSGRLKTINDPQLLKRAKALGRQALHARLLGFQHPETG 296 Query: 296 EVMRIEAPMDEGLKRCLQKL 315 + + +P+ E L+ + L Sbjct: 297 KYLEFSSPLPEDLRSVIDYL 316 >UniRef50_Q8ZFU1 Ribosomal large subunit pseudouridine synthase C n=102 Tax=Gammaproteobacteria RepID=RLUC_YERPE Length = 320 Score = 376 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 255/317 (80%), Positives = 279/317 (88%), Gaps = 2/317 (0%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 MKT P V+++ I+ADEAGQRIDNFL +LKGVPKSMIYRI+RKGEVRVNK RIKPEYKL Sbjct: 1 MKTNNPVVQLITISADEAGQRIDNFLLAKLKGVPKSMIYRIVRKGEVRVNKGRIKPEYKL 60 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 GD VR+PPVRVAEREE VS L KVAALAD IL+EDD++LVLNKPSGTAVHGGSGLS Sbjct: 61 ADGDVVRVPPVRVAEREEVQVSAKLDKVAALADCILFEDDYLLVLNKPSGTAVHGGSGLS 120 Query: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLR K MQKDYLALV Sbjct: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRLKSMQKDYLALV 180 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 RGQWQSH K++QAPLLKNI+QSGER+V+VS EGKPSETRFK+EER+ ATLV+ SPVTGR Sbjct: 181 RGQWQSHCKAIQAPLLKNIMQSGERVVKVSSEGKPSETRFKIEERFEHATLVKASPVTGR 240 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH +AGHPIAFDDRYG REFD+QL GTGL+RLFLHAAAL+F HP TGE MRI Sbjct: 241 THQIRVHALHAGHPIAFDDRYGYREFDQQL--QGTGLHRLFLHAAALRFEHPNTGETMRI 298 Query: 301 EAPMDEGLKRCLQKLRN 317 EAP+D L+ CL LR Sbjct: 299 EAPLDNQLRHCLLALRK 315 >UniRef50_D0MJ49 Pseudouridine synthase n=2 Tax=Bacteria RepID=D0MJ49_RHOM4 Length = 355 Score = 376 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 97/351 (27%), Positives = 146/351 (41%), Gaps = 52/351 (14%) Query: 11 VAITADE-AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRI 68 + + G R+D +L L ++ I R +R+G V VN + KP Y ++ GD + + Sbjct: 10 LEVPPGYREGGRLDAYLARFLAQASRTKIQRGIREGRVTVNGVVVQKPAYTVQPGDVITL 69 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 +R + I+YED +++V+NK +G VH G G + Sbjct: 70 RILRPPPV--------EIVPEPIPLDIVYEDPYLIVVNKQAGLVVHPARGNRSGTLVNAL 121 Query: 129 ALR---------------------------------PEARFLELVHRLDRDTSGVLLVAK 155 EA +VHRLD+DT+G+++VAK Sbjct: 122 LYYIGSGPVRFDEEDDLPEDDEIGLSMVSTGPTEAKLEAPRPGIVHRLDKDTTGLIVVAK 181 Query: 156 KRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKP 215 L Q + + + YLA+V G ++A + ++ V GK Sbjct: 182 DDVTHTGLARQFEHRTIARTYLAIVWGVPDPPRGRIEAAIGRDPRDRQRMAVVPDDRGKR 241 Query: 216 SETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDR---------EF 266 + T ++V E A LVR TGRTHQIRVH ++ GHP+ D YG R Sbjct: 242 AVTHYEVVEALPAAALVRFKLETGRTHQIRVHARHIGHPVLGDPTYGGRTIRYGPHTPRR 301 Query: 267 DRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 + L R LHA L F HP TGE + EAP+ E + L++LR Sbjct: 302 RAFYDQLFARLTRQALHAHTLGFRHPRTGEWLEFEAPLPEDMACALEQLRQ 352 >UniRef50_Q8XYX8 Ribosomal large subunit pseudouridine synthase D n=94 Tax=Proteobacteria RepID=RLUD_RALSO Length = 358 Score = 375 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 96/319 (30%), Positives = 150/319 (47%), Gaps = 20/319 (6%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 IV I G+R+D L L +S + + + G VRV ++P + GD + + Sbjct: 40 IVEIPEALHGERLDKALAKLLPDYSRSRLQQWIDAGAVRVGGAAVRPRAAVCGGDRIEVV 99 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV-IEGLR 128 P R + P + ++YEDD +LV+NKP+G VH +G G + GL Sbjct: 100 PQRADDENAFVAEP-------VDLDVVYEDDTLLVINKPAGLVVHPAAGNWSGTVLNGLL 152 Query: 129 ALRPEA---RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 P+A +VHRLD++TSG+++VA+ A L QL+ + +++ YLALV G+ Sbjct: 153 HRYPQAAGLPRAGIVHRLDKETSGLMVVARTLPAQTDLVRQLQARTVKRTYLALVWGE-T 211 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEER----YAFATLVRCSPVTGRT 241 ++ AP+ ++ + + GKP+ T FK + A +LV+C TGRT Sbjct: 212 PEAGTIDAPIGRDPRDRTRMAIIETASGKPARTHFKTLDVVDLGRAQVSLVQCQLETGRT 271 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLN----RLFLHAAALKFTHPGTGEV 297 HQIRVH + GHP+ D Y + L R LHA L HP +G+ Sbjct: 272 HQIRVHFESEGHPLLGDPVYTRNFRRGRPQTIKAPLPAPFARQALHAVRLGLVHPASGQS 331 Query: 298 MRIEAPMDEGLKRCLQKLR 316 + A + + L + L Sbjct: 332 VHWHAGVPDDLAELMDALE 350 >UniRef50_A9IQ66 Pseudouridine synthase n=5 Tax=Bacteria RepID=A9IQ66_BART1 Length = 334 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 101/342 (29%), Positives = 170/342 (49%), Gaps = 38/342 (11%) Query: 8 VKIVAITADEA-GQRIDNFLRTQLKG-VPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGD 64 + I +T + A QR+D +L Q + +S + ++R+G ++++ + IK P+ KL+ Sbjct: 1 MVIQKVTDEGALDQRLDQWLAKQYHDVLSRSRLQTLIREGCLKIDGQFIKEPKTKLKPNQ 60 Query: 65 EVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI 124 + + + + E A A+A ILYEDDH++V+NKP+G VH G+G G + Sbjct: 61 IIELEMPNLRDAEPSA--------EAIALDILYEDDHVIVINKPAGLVVHPGNGNWTGTL 112 Query: 125 EGLRALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG----M 172 + +VHRLD++TSGV++VAK A +SL Q + G + Sbjct: 113 VNALIYHCGNSLSGIGGVKRPGVVHRLDKNTSGVMVVAKNDLAHKSLSAQFSDHGRTCAL 172 Query: 173 QKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRV--SQEGKPSETRFKVEERYAFA- 229 + Y AL+ G +V ++ A L ++ ++ V + + + T F + E+Y Sbjct: 173 DRRYHALIWGTPHRNVWTIDASLGRSPHNRTKQAVVHKQTPHARHAVTHFSLLEKYGTHA 232 Query: 230 ------TLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGD------REFDRQLTEAGTGL 277 +L+ C TGRTHQIRVH + GHP+ D YG+ + L A Sbjct: 233 DSTSFASLLECRLETGRTHQIRVHMAHIGHPLIGDTVYGNAFKTKSNTLNPTLKNAIDQF 292 Query: 278 NRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNAR 319 NR LHAA+L F HP +G+V+ AP+ + + + ++ L+ Sbjct: 293 NRHALHAASLTFEHPSSGKVISFSAPLPQDMAQLIKHLKKMN 334 >UniRef50_B8E0R4 Pseudouridine synthase n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E0R4_DICTD Length = 303 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 95/318 (29%), Positives = 153/318 (48%), Gaps = 25/318 (7%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 + I + +RID +L ++ + +S I ++ K ++VN+K IK YK++ GD + + Sbjct: 4 QRYEIYVEGESERIDKYLSKKVP-LSRSQIQDLIEKELIKVNEKPIKNSYKVKLGDRIEV 62 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 E E K + I+YED+ ++++NKP G VH G + Sbjct: 63 IIPPPVETE--------VKPQDIPIEIVYEDEDMVIINKPKGMVVHPAHGHYNDTLVNAL 114 Query: 129 ALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 R ++HRLD+DT+G+L++AK + + L EQL+ + +++ Y AL Sbjct: 115 LYRVKDLSGIGGELRPGIIHRLDKDTTGLLIIAKNDLSHQKLSEQLKNRTLRRTYWALCE 174 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 G+ K ++AP+ ++ + + + GK + T FKV ER+ TL+ TGRT Sbjct: 175 GEIPWEEKRIEAPIGRHPINRKKMAIV--PYGKIAITNFKVLERFKGYTLISADLETGRT 232 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVH + G PI D+ YG + G+ LHA + F HP G M E Sbjct: 233 HQIRVHISHLGFPIVGDEVYGR-------IDKKFGVKGQLLHAKKVSFIHPTKGIPMEFE 285 Query: 302 APMDEGLKRCLQKLRNAR 319 + E K+ L LR R Sbjct: 286 IDLPEEFKKVLTLLREKR 303 >UniRef50_C0BNA6 Pseudouridine synthase n=7 Tax=Bacteroidetes RepID=C0BNA6_9BACT Length = 379 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 96/322 (29%), Positives = 157/322 (48%), Gaps = 23/322 (7%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + + RID +L ++ ++ I + ++G + VN +K YK++AGD++++ Sbjct: 57 FIASKGQEPLRIDKYLMNFIENATRNKIQQAAKEGHIWVNDLVVKQNYKVKAGDQIKVMF 116 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 L + ++YED ++V+NKP G VH G G G + Sbjct: 117 THPPYEF-------LLTPEDIPLDVVYEDSDLMVVNKPPGMVVHPGHGNYSGTLINALLF 169 Query: 131 R------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQW 184 LVHR+D+DTSG+L+VAK A+ L +Q +K +++Y+A+V G Sbjct: 170 HVKDLPLNADERPGLVHRIDKDTSGLLVVAKTAKAMTHLAKQFFDKTSEREYVAIVWGNV 229 Query: 185 QSHVKSVQAPLLKNILQSGERIVRVSQE-GKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 + +V+ + ++ + V + GK + T +KV ER + TLV C TGRTHQ Sbjct: 230 EEEQGTVRGHIGRHPKNRLQMAVFPDGDQGKEAVTHYKVMERLGYVTLVSCVLETGRTHQ 289 Query: 244 IRVHTQYAGHPIAFDDRYGDREF---------DRQLTEAGTGLNRLFLHAAALKFTHPGT 294 IR H ++ GH + D+RYG + + + A L R LHA L F HP + Sbjct: 290 IRAHMKHIGHTLFNDERYGGEKILKGTTFTKYKQFVDNAFKALPRQALHAKTLGFVHPSS 349 Query: 295 GEVMRIEAPMDEGLKRCLQKLR 316 GE+MR P+ E + C++K R Sbjct: 350 GELMRFNTPIPEDMVLCIEKWR 371 >UniRef50_A0L9J0 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9J0_MAGSM Length = 332 Score = 372 bits (957), Expect = e-102, Method: Composition-based stats. Identities = 97/321 (30%), Positives = 150/321 (46%), Gaps = 29/321 (9%) Query: 15 ADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRIPPVRV 73 AD+AGQR+D L + +S + R +++ V V+ + K P K+ G + I P Sbjct: 16 ADDAGQRLDKALCCHFPDLTRSTLQRWIKEERVIVDHEVAKLPSQKVRVGQHIIIYPSEP 75 Query: 74 AEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR-- 131 P +A IL+ED+H++VLNKP+G VH G+G++ G + Sbjct: 76 E--------PSTALPEEIALEILFEDEHLIVLNKPAGMVVHPGAGVNHGTLVNALLYHCG 127 Query: 132 ------------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 +VHRLD++TSG+++ AK+ A L Q ++ + + YLAL Sbjct: 128 TPDNPHGGLSGIGGVIRPGIVHRLDKETSGIMVAAKQDHAHIHLSRQFEQRTIGRRYLAL 187 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTG 239 RG Q ++ + ++ + + V V Q G+ + TR+KV E L+RC +G Sbjct: 188 TRGIPQPAQGRIEGAIGRHPIHRTKMAV-VEQGGRAAATRYKVLEPLGQFALIRCRLESG 246 Query: 240 RTHQIRVHTQYAGHPIAFDDRYG-----DREFDRQLTEAGTGLNRLFLHAAALKFTHPGT 294 RTHQIRVH + GHP+ D YG + + R LHA L F HP T Sbjct: 247 RTHQIRVHMTHIGHPLVGDPLYGAQHKAPSHWPPLHRQRFDQFQRQALHAHTLTFIHPHT 306 Query: 295 GEVMRIEAPMDEGLKRCLQKL 315 GE M + P ++ + L Sbjct: 307 GEEMSFKRPPPADFRQLYETL 327 >UniRef50_B8FT16 Pseudouridine synthase n=70 Tax=Bacteria RepID=B8FT16_DESHD Length = 334 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 97/307 (31%), Positives = 145/307 (47%), Gaps = 24/307 (7%) Query: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAERE 77 G R+D + ++ G +S I ++ +G V VN K YK+ A D++ + E + Sbjct: 41 EGTRLDVGVTERV-GKSRSFIQGLIEEGHVLVNGAARKANYKVRAMDQIAVVIPPPRELK 99 Query: 78 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR------ 131 + + ILYED+ +LV+NK G VH G + Sbjct: 100 --------VEAENIPLEILYEDEDVLVVNKSQGMVVHPAPGAWTKTLVNALLYHCRNLSG 151 Query: 132 -PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKS 190 +VHR+D+DTSG+L+VAK A + L EQ++ M + YLA+V G + Sbjct: 152 INGVLRPGIVHRIDKDTSGLLVVAKNDLAHQGLAEQIKAHSMARRYLAIVHGVVFEPSGT 211 Query: 191 VQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQY 250 V+AP+ ++ + V V Q K + T ++V ER+ TL+ TGRTHQIRVH Y Sbjct: 212 VEAPIGRDPADRKKMAV-VFQNAKEAVTHYEVLERFRDFTLLEARLETGRTHQIRVHMAY 270 Query: 251 AGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKR 310 HP+ D YG R+ GL LHA L F HP +GE M AP ++ Sbjct: 271 LKHPVLGDPLYGPRKNP-------FGLQGQMLHAQLLGFQHPRSGEYMEFSAPASGMFQK 323 Query: 311 CLQKLRN 317 L+++R Sbjct: 324 VLEEIRR 330 >UniRef50_A7NB61 Pseudouridine synthase n=18 Tax=Francisella RepID=A7NB61_FRATF Length = 332 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 92/325 (28%), Positives = 158/325 (48%), Gaps = 19/325 (5%) Query: 1 MKTETPSVKI---VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPE 57 M T S + + + +AG+RID + Q + ++ I + L++G + VN + KP+ Sbjct: 1 MAHNTLSNRFHQNIIMHPKDAGKRIDVAINEQFEQFSRAQIQKWLKEGSITVNGRATKPK 60 Query: 58 YKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGS 117 + + +EV I + E A + I++EDD I+V++KP VH G+ Sbjct: 61 HIVLGDEEVEINIELLPTNEWIA--------EDINLKIIFEDDDIIVIDKPVNMIVHPGA 112 Query: 118 GLSFGVIEGLRALRPEA----RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQ 173 G G + R + +VHRLD+DTSG+++ AK A +L +QL E+ + Sbjct: 113 GNPTGTVSNALLHRYKDQDKLPRAGIVHRLDKDTSGLMVAAKSSIAYHNLVQQLAERKVS 172 Query: 174 KDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVR 233 + YLA+V G+ ++ P+ ++ + + ++ GK + T + E Y TL+ Sbjct: 173 RKYLAIVEGEIYQ-QGTINQPIGRDPTNRTK--MAINYRGKEAITYYTPIEVYDGFTLIE 229 Query: 234 CSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPG 293 C TGRTHQIRVH + HP+ D Y ++ + A T R LHA L F HP Sbjct: 230 CQLETGRTHQIRVHMKSIKHPLVGDQTY-NKSSTKLEKLAITIPTRQALHAYKLSFIHPT 288 Query: 294 TGEVMRIEAPMDEGLKRCLQKLRNA 318 T ++++ ++ + E + +L Sbjct: 289 TAKMVKFKSKLPEDMLNLKAQLEQT 313 >UniRef50_C6WV38 Pseudouridine synthase n=3 Tax=Proteobacteria RepID=C6WV38_METML Length = 368 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 98/326 (30%), Positives = 164/326 (50%), Gaps = 20/326 (6%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 + ++ + I++D G R+D L+ L +S + ++ G V V+ K + K+ Sbjct: 6 QQSLTNLIHLTISSDLGGLRLDVALQRLLPEHSRSRLQSWIKSGLVTVDGKASTAKTKVW 65 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 G++V + E + I+YEDDHILV+NKP+G VH +G Sbjct: 66 GGEKVSVDVQVKPESRAF-------IAQDIPLDIVYEDDHILVVNKPAGMVVHPAAGNWD 118 Query: 122 GVIEGLRALRP----EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 G + + +VHRLD++TSG+L+VAK +A L QL+ + ++++Y Sbjct: 119 GTLLNALLFHAPQLHDVPRAGIVHRLDKETSGLLVVAKTLNAQTHLVRQLQARTVKREYR 178 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPV 237 A+V GQ V PL ++ + + +++ GKP+ TR+++ ER++ T +RC+ Sbjct: 179 AIVWGQL-WRNGVVDQPLGRDPRSRTK--MAINRMGKPAITRYEILERFSVQTYLRCNLE 235 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREF------DRQLTEAGTGLNRLFLHAAALKFTH 291 TGRTHQIRVH Q+ P+ D YG R + L +A + +R LHA L H Sbjct: 236 TGRTHQIRVHMQHLKAPLVGDPVYGFRGIVPIRAMTQTLRDAVSQFHRQALHAIKLGLVH 295 Query: 292 PGTGEVMRIEAPMDEGLKRCLQKLRN 317 P T E M + + + +K L+ +R+ Sbjct: 296 PATNEFMEWQIELADDMKVLLEAMRH 321 >UniRef50_C4FWV7 Pseudouridine synthase n=2 Tax=Firmicutes RepID=C4FWV7_9FIRM Length = 309 Score = 370 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 105/310 (33%), Positives = 160/310 (51%), Gaps = 17/310 (5%) Query: 15 ADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVA 74 +AG R+D L L G +S I +I++ G V VN + K +KL+ + + + +A Sbjct: 9 EGQAG-RLDKVLTDLLPGESRSTIQKIIKDGLVSVNGQEQKANFKLKGDETLLVARRNLA 67 Query: 75 EREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA 134 E+ P A+ I+YED+ ILV+NKP+G VH G G + Sbjct: 68 VEEDSLPEPE-----AMDLDIIYEDEDILVINKPAGLVVHPSKGHLKGTLVNGLLHYLNG 122 Query: 135 --------RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 +VHR+D+DTSG+L+VAK +A ++L +QL M++ Y+ALV GQ ++ Sbjct: 123 NLSTGSDFYRPGIVHRIDKDTSGLLVVAKHNAAHQALADQLLNHDMRRSYIALVHGQVKA 182 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 +++APL ++ V +EGK + TRF+V E + ATL+ TGRTHQIRV Sbjct: 183 PQGTIEAPLQRDPANRLRWTVA--KEGKYALTRFQVMENFENATLLDLELETGRTHQIRV 240 Query: 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDE 306 H ++ GHP+ D Y + D + LHA ALK HP +GE + +AP+ Sbjct: 241 HLEFIGHPLVGDPVY-RKGLDHIKGSLVHDMTGQLLHAYALKLQHPRSGEWLEFKAPLPR 299 Query: 307 GLKRCLQKLR 316 + L +LR Sbjct: 300 RFEEALDQLR 309 >UniRef50_C7H7W3 Ribosomal large subunit pseudouridine synthase D n=2 Tax=Faecalibacterium prausnitzii RepID=C7H7W3_9FIRM Length = 314 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 98/319 (30%), Positives = 145/319 (45%), Gaps = 25/319 (7%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 + + A+ AGQRID FL + G+ +S + ++ +G V N K KL+AGD + + Sbjct: 4 REYIVEAEGAGQRIDRFLSGEDTGLSRSALQGLVAEGHVLCNGKAPAKSLKLKAGDIILL 63 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 E P + I+YED H+LV+NKP G VH G G + Sbjct: 64 --------EIPDAKPIEAVPQEIPLDIIYEDAHLLVVNKPKGMVVHPAPGNPDGTLVNAL 115 Query: 129 ALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 +VHR+D+DTSG+L+VAK + L +Q+ +++ Y +V Sbjct: 116 LWHCKGSLSGIGGEIRPGIVHRVDKDTSGLLVVAKDDATHIGLSQQMAVHSVERAYNTIV 175 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRV--SQEGKPSETRFKVEERYAFATLVRCSPVT 238 G + V++ L ++ + V K + T +KV ER T++ C T Sbjct: 176 YGGFAQDEGFVESNLGRSKTDRKKMAVYPASEPHTKYAYTGYKVLERLGEFTMLECRLKT 235 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM 298 GRTHQIRVH HP+A D YG T L+ LHA L F HP TGE + Sbjct: 236 GRTHQIRVHMASIHHPVAGDPVYGPHN-------CITSLHGQCLHAKTLGFIHPITGEHL 288 Query: 299 RIEAPMDEGLKRCLQKLRN 317 R ++ + + R L LR Sbjct: 289 RFDSELPDYFTRFLTTLRQ 307 >UniRef50_P74346 Uncharacterized RNA pseudouridine synthase slr1629 n=19 Tax=Bacteria RepID=Y1629_SYNY3 Length = 327 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 92/329 (27%), Positives = 152/329 (46%), Gaps = 28/329 (8%) Query: 3 TETPSVKIVAITADEA-----GQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KP 56 T++ + + +TAD G R+D +L QL + +S +++ G+V+ N Sbjct: 10 TDSDPYQELLVTADGVAEGTLGVRLDKWLAEQLPELSRSRCQKLIESGQVQRNGLVCQDK 69 Query: 57 EYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGG 116 L+ GD + + + P + ILYED+ ++++NKP+G VH G Sbjct: 70 NLILKTGDRLVVNIPELI--------PLDVVAQNIPLDILYEDEQLIIINKPAGLVVHPG 121 Query: 117 SGLSFGVIEGLRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRE 169 G G + + +VHRLD+DT+G ++VAK AL +L QL+E Sbjct: 122 PGHPDGTVVNALLAHCPDLAGIGGVQRPGIVHRLDKDTTGAMVVAKTELALHNLQVQLKE 181 Query: 170 KGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGER-IVRVSQEGKPSETRFKVEERYAF 228 K ++ Y +V G + +V P+ ++ + IV V + G+ + T +++ ER Sbjct: 182 KTARRLYWGIVYGSPKEIQGTVNLPVGRHPGDRQKMGIVPVEKGGREAVTHWRLLERIGN 241 Query: 229 ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALK 288 + + TGRTHQIRVH++ GHP+ D+ Y L LHA L Sbjct: 242 HSWLEFQLETGRTHQIRVHSKQMGHPLVGDNLY------TSPGSVNVNLPGQALHAHQLS 295 Query: 289 FTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 HP +GE++ APM ++ L LR Sbjct: 296 LIHPVSGEIITAIAPMPAHFEKLLVYLRQ 324 >UniRef50_A3EQJ0 Pseudouridine synthase n=1 Tax=Leptospirillum rubarum RepID=A3EQJ0_9BACT Length = 339 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 96/327 (29%), Positives = 149/327 (45%), Gaps = 36/327 (11%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 + + E +R+D +L G +S + R+L + V +N +K+ GD +R+ Sbjct: 19 REFLVPRGEQPKRLDIYLSKNCLGFTRSRVQRLLEEKLVTINDIYPASSHKVRGGDRIRV 78 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 + + ILYED+ ++V++KP G VH G S G + Sbjct: 79 LIP--------PPRSQTAQPENIRLEILYEDEDLIVISKPPGLVVHPAPGHSSGTLVNGL 130 Query: 129 ALRPEAR-------------------FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRE 169 +++ LVHRLD+DTSGV++V K S + L Q ++ Sbjct: 131 LFHFQSQGDEQKKGEPEEEEEAERPLRAGLVHRLDQDTSGVMVVGKTESVVLDLMNQFKD 190 Query: 170 KGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY-AF 228 + + K YLALV+G + AP+ ++ + VR Q+GKPS TR++V E Y Sbjct: 191 RSVSKKYLALVKGILPKKRGEINAPIGRSTHDRKKFTVR--QDGKPSVTRYRVLETYHEN 248 Query: 229 ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALK 288 +L+ + +TGRTHQIRVH +Y G P+ D YG + R LHA L Sbjct: 249 YSLLEVTLLTGRTHQIRVHFRYLGFPLLGDAVYGSKG------TENKNFPRQMLHAWKLS 302 Query: 289 FTHPGTGEVMRIEAPMDEGLKRCLQKL 315 F HP + M EAP+ L++L Sbjct: 303 FQHPSSNSKMEFEAPLPPDFVSALERL 329 >UniRef50_B9JRD0 Pseudouridine synthase n=1 Tax=Agrobacterium vitis S4 RepID=B9JRD0_AGRVS Length = 342 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 102/345 (29%), Positives = 163/345 (47%), Gaps = 39/345 (11%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKG-VPKSMIYRILRKGEVRVNKKRIK-PEYK 59 K K + D G R+D +L L G + ++ + ++ +G V VN + P+ K Sbjct: 6 KQAGEPRKELIAGEDAEG-RLDAWLAASLGGDLSRNRVKALIEQGAVFVNGTAVTEPKRK 64 Query: 60 LEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGL 119 ++ GD++ I + E K + +LYED ++VL+KP+G VH G+G Sbjct: 65 IKPGDQLVIAMPEPEDPEP--------KGEDIPLTVLYEDKDLIVLSKPAGLVVHPGAGN 116 Query: 120 SFGVIEGLRALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG 171 G + + +VHRLD++TSGV++VAK A R L +Q + G Sbjct: 117 WTGTLVNALIHHCGDSLSGIGGVKRPGIVHRLDKETSGVMVVAKNDIAHRHLADQFADHG 176 Query: 172 ----MQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVR--VSQEGKPSETRFKVEER 225 +++ Y ALV G+ + ++ A L + +R V+ + + + + T ++V ER Sbjct: 177 RSGPLERAYQALVWGRPRGLRGTIDAALGR-AGDRTKRTVKREDTDDAREAITHYQVMER 235 Query: 226 YAF-------ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYG------DREFDRQLTE 272 Y A+LV C TGRTHQIRVH + GHP+ D YG Sbjct: 236 YGEKPDATCLASLVECRLETGRTHQIRVHMAHIGHPLIGDPEYGAAFKTKANLLPDAAKA 295 Query: 273 AGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 T +R LHA L F HP TG+VM AP+ + ++ ++ LR+ Sbjct: 296 IVTNFHRQALHAYLLAFEHPTTGDVMHFAAPIPDDMETIIRALRD 340 >UniRef50_A6C0W7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C0W7_9PLAN Length = 342 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 94/334 (28%), Positives = 148/334 (44%), Gaps = 28/334 (8%) Query: 5 TPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGD 64 + + + A G RID++L + + +++ V VN +K ++ D Sbjct: 13 SSEPIEITVEARAHGWRIDHYLCRLYPNYTRVLFQTAIKQEAVLVNGLPVKAARRMRVND 72 Query: 65 EVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI 124 V + + + + + I+YEDD I ++NKPS VH G G G + Sbjct: 73 RVSVRLPELPD--------NRLPPEDIPIDIVYEDDWIAIINKPSDMIVHPGKGNYAGTL 124 Query: 125 EGLRALRPEA-------RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 G + +VHRLDR+TSG+++VAK L Q ++ +QK+Y Sbjct: 125 AGALQYHFDQLSDVAGQYRPGIVHRLDRNTSGIMVVAKDNQVHAKLSAQFEKRDVQKEYR 184 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIV-RVSQEGKPSETRFKVEERYAFATLVRCSP 236 A+V G+ + + + + + IV + + T ++V ERY T VR P Sbjct: 185 AIVWGRMEFDTDYIDTFMCVHPRAREKMIVCDEGGNARNAFTYYEVIERYQAFTYVRLKP 244 Query: 237 VTGRTHQIRVHTQYAGHPIAFDDRYGDR------------EFDRQLTEAGTGLNRLFLHA 284 TGRTHQ+RVH Q+ GH I D YG E D E+ + R LHA Sbjct: 245 RTGRTHQLRVHMQHIGHSIVADRVYGGHKSLKMKSLGIQAEADAAELESDVLIERQALHA 304 Query: 285 AALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNA 318 L+F HP +G+ M+ EAP+ E ++ L L Sbjct: 305 YCLEFFHPQSGKPMKFEAPLPEDMQNTLAALDQY 338 >UniRef50_Q49WX8 Pseudouridine synthase n=1 Tax=Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 RepID=Q49WX8_STAS1 Length = 305 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 96/320 (30%), Positives = 149/320 (46%), Gaps = 26/320 (8%) Query: 7 SVKIVAIT-ADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDE 65 + I ++ GQRID L ++ I ++ V+VN + IK YK + D Sbjct: 2 DIHQFKIENPEDTGQRIDKLLPEYHSEWSRTQIQDWIKASLVKVNDQVIKSNYKTKMNDH 61 Query: 66 VRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIE 125 + + E + + L I YEDD + ++ KP G VH +G G + Sbjct: 62 IVVTEKETVEADI--------QPENLNLDIYYEDDDVAIVYKPKGMVVHPSAGHYTGTLV 113 Query: 126 GLRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLA 178 + +VHR+D+DTSG+L+VAK A RSL +QL K + + Y+A Sbjct: 114 NGLMYQMKNLSGINGEIRPGIVHRIDKDTSGLLMVAKNDVAHRSLVDQLVNKTVTRKYVA 173 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVT 238 LV G+ +V AP+ +N + + V +GK + T F V E + TL+ C T Sbjct: 174 LVHGKIPHDYGTVDAPIGRNKND--RQSMDVVDDGKEAVTHFNVLEHFNKYTLIECQLET 231 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM 298 GRTHQIRVH +Y G+P+ D +YG ++ + LHA + F HP T E + Sbjct: 232 GRTHQIRVHMKYIGYPLVGDPKYGPKK--------TLDIGGQALHAGIIGFEHPVTHEYI 283 Query: 299 RIEAPMDEGLKRCLQKLRNA 318 + E ++ L +LR + Sbjct: 284 EKSTALPEDFEQLLSELRRS 303 >UniRef50_A1URK8 Pseudouridine synthase n=2 Tax=Bartonella RepID=A1URK8_BARBK Length = 336 Score = 369 bits (948), Expect = e-101, Method: Composition-based stats. Identities = 100/338 (29%), Positives = 162/338 (47%), Gaps = 38/338 (11%) Query: 12 AITADEA-GQRIDNFLRTQLKG-VPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRI 68 IT ++A GQRID +L + + +S + ++R+G ++++ K + P+ K+++ + + Sbjct: 4 QITDEDALGQRIDQWLAKHYQNELSRSRLQTLIREGYLKIDGKLVTEPKTKIKSNQTIEL 63 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 ++ + A+ IL+EDDHI+V+NKP+G VH G G G + Sbjct: 64 TIP--------TLNNAYPEGEAIPLHILFEDDHIIVVNKPAGLVVHPGHGNWTGTLVNAL 115 Query: 129 ALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG----MQKDY 176 R +VHRLD++TSGV++VAK A + L Q + G + + Y Sbjct: 116 IYHCGDSLSGIGGVRRPGIVHRLDKNTSGVIVVAKNDLAHKGLSAQFSDHGRTGVLDRRY 175 Query: 177 LALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQE--GKPSETRFKVEERYAF------ 228 AL+ G ++ + A L + ++ V S + + T F V E+Y Sbjct: 176 HALIWGSPNRNIGVITASLGRARYDRTKQAVIHSHNIYARHAVTHFSVIEKYQTCADKIP 235 Query: 229 -ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGD------REFDRQLTEAGTGLNRLF 281 A+L+ C TGRTHQIRVH + GHP+ D YG+ FD + EA NR Sbjct: 236 FASLLECRLETGRTHQIRVHMAHIGHPLVGDTVYGNAFKTKSNRFDSTIKEAIDLFNRQA 295 Query: 282 LHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNAR 319 LHAA+L F HP G +M AP+ + + + + Sbjct: 296 LHAASLTFEHPAKGNIMSFSAPLPQDMAELINHFKKLN 333 >UniRef50_Q3AVX8 Pseudouridine synthase n=40 Tax=cellular organisms RepID=Q3AVX8_SYNS9 Length = 339 Score = 368 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 91/306 (29%), Positives = 146/306 (47%), Gaps = 20/306 (6%) Query: 19 GQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREE 78 R+D +L +Q ++ I + + G VRVN K+ K + L GD+V++ Sbjct: 39 PMRLDRWLVSQRTEQSRARIQKFIDAGYVRVNGKQGKAKTPLREGDQVQLWMPPPE---- 94 Query: 79 EAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG-LRALRPEAR-- 135 K + +L+ED+HI+VLNK +G VH G G + L P+ Sbjct: 95 ---PLPYLKPQPMDLDVLFEDEHIIVLNKSAGLTVHPAPGNKDGTLVNGLLHHCPDLPGI 151 Query: 136 ----FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSV 191 +VHRLD+DTSG ++VAK + AL L Q++++ ++Y A+V G ++ Sbjct: 152 SGKLRPGIVHRLDKDTSGCIVVAKSQEALVKLQVQIQKRVASREYFAVVHGVPDGDSGTI 211 Query: 192 QAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYA 251 + ++ + + V + G+ + T + + ER+ +L+R TGRTHQIRVH + Sbjct: 212 IGAVGRHPVDRKKYAVVSDESGRYARTHWTLIERFGDYSLLRFKLDTGRTHQIRVHCAHI 271 Query: 252 GHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRC 311 HP+ D Y + + L LHA L HP TGE M EAP+ +++ Sbjct: 272 NHPVVGDPTY------SRCRKLPLDLPGQALHAVQLGLDHPITGERMVFEAPLPPVMEKL 325 Query: 312 LQKLRN 317 L LR Sbjct: 326 LLVLRR 331 >UniRef50_D0KVM5 Pseudouridine synthase n=11 Tax=Proteobacteria RepID=D0KVM5_HALNC Length = 340 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 92/320 (28%), Positives = 144/320 (45%), Gaps = 20/320 (6%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 + + I + AGQR+D L +S I ++ GE+ ++ + +P + G+ V + Sbjct: 5 ETLLIPPECAGQRLDQALAKCWPDYSRSRIQDWIKSGEILLDGEVARPRATVLGGESVEL 64 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 + I+YEDD I+VLNK VH +G G + Sbjct: 65 LAEIEEAV--------AAVPQDIPLDIIYEDDAIIVLNKSPDIVVHPAAGNPDGTLVNAL 116 Query: 129 ALRPEA----RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQW 184 + +VHRLD+ TSGV++VAK +A + L E L + ++++Y +V G Sbjct: 117 LFHDPSLVSVPRAGVVHRLDKQTSGVMVVAKTLAAHKILVENLAARKIRREYDTVVMGHV 176 Query: 185 QSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQI 244 + +V AP+ ++ + V + GK + T ++V + Y T +R TGRTHQI Sbjct: 177 VAG-GTVDAPIGRHPRDRQRQAVTAT--GKRAVTHYRVLQHYGEQTWLRVQLETGRTHQI 233 Query: 245 RVHTQYAGHPIAFDDRYGDR-----EFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RVH + HP+ D YG R L + R LHA L HP TG MR Sbjct: 234 RVHMAHIRHPVIGDPVYGGRPRIPPRASTALIDVLRHFERQALHARYLTLAHPVTGTQMR 293 Query: 300 IEAPMDEGLKRCLQKLRNAR 319 EAPM + ++ + L R Sbjct: 294 FEAPMPDDMRELIALLTEYR 313 >UniRef50_C1F7V3 Pseudouridine synthase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F7V3_ACIC5 Length = 355 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 104/343 (30%), Positives = 166/343 (48%), Gaps = 34/343 (9%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 K P ++ + A+ AGQR+D +L TQL V +S + +L G+V V+ + + KL Sbjct: 20 KDHAPQIQHFTVPAEAAGQRLDAWLTTQLPDVSRSRVKLLLDDGQVTVDSLKERASLKLR 79 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 G+ V + R E A P + I+YED ++V+NKP+G VH GSG + Sbjct: 80 GGESVEV-------RGEPAPPPLRAMAEDIPLDIIYEDKDLIVVNKPAGMMVHAGSGATD 132 Query: 122 -----GVIEGLRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRE 169 G + R +VHRLD++TSG+++VA+ +A + L E + Sbjct: 133 SARNRGTLVNALLGRQEKLSKTGGDLRPGIVHRLDKETSGLIIVARNDAAHQRLAEMFSQ 192 Query: 170 KGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEE----R 225 + + K YLALV G ++ A + +++++ R ++ + + + ++V+ R Sbjct: 193 REIHKTYLALVHGHIAEDRGTINAAIARDVIRRTRMTTRRTEGARTAISHYRVQRRIETR 252 Query: 226 YAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDR-----------EFDRQLTEAG 274 + TLV TGRTHQIRVH GHP+ D YG + G Sbjct: 253 WGKFTLVSVRIETGRTHQIRVHLSSIGHPVVGDTHYGAPTTIVLPVANRARRKQLPAPEG 312 Query: 275 TGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 L R FLHAA LKF HP + + + +EAP+ L L++L + Sbjct: 313 LSLPRNFLHAAELKFPHPRSEKPLHLEAPLPAELVAFLEQLES 355 >UniRef50_Q01Q94 Pseudouridine synthase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Q94_SOLUE Length = 296 Score = 366 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 99/312 (31%), Positives = 145/312 (46%), Gaps = 25/312 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + GQRID +L L +S I ++ VRVN +K Y L A D V + Sbjct: 3 FTADPADTGQRIDQWLHAHLPDFSRSRIQEWIKSARVRVNGAAVKTSYTLRAADAVEV-- 60 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 E P + ILYED ++ ++KP+G VH G+G+ G + Sbjct: 61 ------EPADPPPLNATAEDIPLRILYEDADVVAIDKPAGMVVHAGAGVHSGTLVNALLH 114 Query: 131 R-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 R +VHRLDR TSGVLLVAK +A + L Q + ++K YLALV G Sbjct: 115 RFATLSGVGGPLRPGIVHRLDRFTSGVLLVAKNDAAHQKLAAQFSGREIEKVYLALVHGT 174 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 + ++ P+ ++ + R+++ G+ + + ++V R+ TL+ TGRTHQ Sbjct: 175 VKPETGRIERPIARDPVHRARMTARLAE-GRAAWSEYRVLRRFPDFTLLEVRIGTGRTHQ 233 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH HP+ D YG A L R FLHA ++F P +G M IE+P Sbjct: 234 IRVHLASIRHPVVGDTLYG--------APAQPLLGRYFLHAHRIRFHLP-SGREMLIESP 284 Query: 304 MDEGLKRCLQKL 315 + L+ L L Sbjct: 285 LPPDLEAWLGTL 296 >UniRef50_C8NEP8 Pseudouridine synthase n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NEP8_9LACT Length = 308 Score = 366 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 96/303 (31%), Positives = 146/303 (48%), Gaps = 27/303 (8%) Query: 20 QRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEE 79 QR+D L +L G+ ++ I L+ G + VN + +K YK ++GDEV I Sbjct: 16 QRLDKVLTGEL-GLSRTTIQSWLKAGLISVNGEVVKSNYKAQSGDEVTILQKEEDVITI- 73 Query: 80 AVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR-------- 131 + + I++EDD ++V+NKPSG VH G G + Sbjct: 74 -------QPENIPLDIVFEDDSLIVVNKPSGMVVHPSKGHYSGTLVNALLYHSNSLSDST 126 Query: 132 -PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKS 190 E LVHR+D+DTSG+L++AK + L EQ+ E M ++Y+A+V G + Sbjct: 127 SEEIYRPGLVHRIDKDTSGLLVIAKNNDVHQKLAEQIAENKMNREYIAIVDGHFAHETGV 186 Query: 191 VQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQY 250 V APL ++ +R+V + GK + T F+V + ++ +LV C TGRTHQIR H ++ Sbjct: 187 VDAPLSRHQTNRLKRVV--EKGGKNAITHFEVLDSFSDYSLVSCRLETGRTHQIRAHMEF 244 Query: 251 AGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKR 310 HPI D Y + + FLHA L FTHP TGE + + + Sbjct: 245 IKHPIVNDPLYHPKGKNATEF-------GQFLHARTLSFTHPLTGETLNFQVEPPKEFAE 297 Query: 311 CLQ 313 +Q Sbjct: 298 FIQ 300 >UniRef50_P65834 Ribosomal large subunit pseudouridine synthase D n=321 Tax=Gammaproteobacteria RepID=RLUD_ECOL6 Length = 326 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 90/315 (28%), Positives = 146/315 (46%), Gaps = 21/315 (6%) Query: 12 AITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPP 70 ++ ++ GQR+D L +S I + V VN K KP+ K+ G++V I Sbjct: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 69 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV-IEGLRA 129 E + + I+YED+ I+V+NKP VH G+G G + L Sbjct: 70 EIEEEARF--------EPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLH 121 Query: 130 LRP---EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 P + +VHRLD+DT+G+++VAK A L E L+ + + ++Y A+ G + Sbjct: 122 YYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTA 181 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 +V P+ ++ + V GKP+ T +++ E + T +R TGRTHQIRV Sbjct: 182 G-GTVDEPISRHPTKRTHMAV--HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 Query: 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGT-----GLNRLFLHAAALKFTHPGTGEVMRIE 301 H + HP+ D YG R + +R LHA L+ HP +G M Sbjct: 239 HMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWH 298 Query: 302 APMDEGLKRCLQKLR 316 AP+ + + ++ +R Sbjct: 299 APIPQDMVELIEVMR 313 >UniRef50_A3M2Y1 Pseudouridine synthase n=18 Tax=Gammaproteobacteria RepID=A3M2Y1_ACIBT Length = 350 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 96/318 (30%), Positives = 148/318 (46%), Gaps = 20/318 (6%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 V + GQRID + + + +++G + VN +KP+Y+ E + + + Sbjct: 41 VQLDESYLGQRIDQVAAMVWSEFSREKLKQWMKEGHLLVNGNIVKPKYRCEGNETLTLNV 100 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 A+ + + I+YED+ ILV+NKP G VH G+G + + Sbjct: 101 ELEAQTNS--------QPENIPLDIVYEDEDILVINKPVGMVVHPGAGNTSSTLVNALLY 152 Query: 131 R----PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 E LVHR+D+DTSG+L+VAK A SL +QL +K + + Y + G + Sbjct: 153 HSPKSAELSRAGLVHRIDKDTSGLLVVAKNLEAQFSLSKQLGDKSVYRIYDLVTYGNIIA 212 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 ++ P+ ++ + + + + G+ + T + V+ER+ T V+ TGRTHQIRV Sbjct: 213 G-GTIDEPIKRHPVDRVK--MAILPGGRDAVTHYNVKERFRDFTRVQAQLETGRTHQIRV 269 Query: 247 HTQYAGHPIAFDDRYGDR-----EFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 H Y GH + D Y +R L E G R LHAA L HP TGE M E Sbjct: 270 HFSYIGHGLVGDQVYMNRVRIPAGASELLIETLRGFKRQALHAAKLGLKHPRTGEEMLFE 329 Query: 302 APMDEGLKRCLQKLRNAR 319 AP E + + LR Sbjct: 330 APWPEDFTQLVNVLRTEN 347 >UniRef50_A9BMW0 Pseudouridine synthase n=10 Tax=Comamonadaceae RepID=A9BMW0_DELAS Length = 356 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 96/317 (30%), Positives = 154/317 (48%), Gaps = 23/317 (7%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKR-IKPEYKLEAGDE 65 ++ + + + G R D L + +S + ++L +G V +N + +KP K+ AGD Sbjct: 45 ELREITVPPAQHGLRADKVLAECVAEFSRSYLQQLLAQGAVTLNGRVLVKPATKVAAGDR 104 Query: 66 VRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI- 124 + + + + +A ++YED+H+LV+NKP+G VH G G + Sbjct: 105 MVLEMRPTQQSMAF-------QPEDMALDVVYEDEHLLVVNKPAGLVVHPAPGNWTGTLL 157 Query: 125 EGLRALRP---EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 GL P E +VHRLD+DTSG+++VA+ R+A+ +L + + + + YLAL Sbjct: 158 NGLLGRDPKAREVPRAGIVHRLDKDTSGLMVVARSRAAMDALVAMIAARDVSRQYLALAH 217 Query: 182 GQW-QSHVKSVQAPLLKNILQSGERIVR--VSQEGKPSETRFKVEERYAFATLVRCSPVT 238 W + V AP+ ++ V GK + T + +LVRC+ T Sbjct: 218 KAWGPRKHREVDAPIGRDPRNRLRMAVVDLAQHAGKTARTDIDLLAGNEEVSLVRCTLHT 277 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM 298 GRTHQIRVH GHP+ D YG +E G+ R LHA L FTHP TG+ + Sbjct: 278 GRTHQIRVHMASLGHPLVADAVYGGKEAG--------GMARQALHAFRLAFTHPMTGQAL 329 Query: 299 RIEAPMDEGLKRCLQKL 315 + AP+ + + L+ Sbjct: 330 VLRAPLPPDMAQALENW 346 >UniRef50_C6XFD0 Pseudouridine synthase n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFD0_LIBAP Length = 340 Score = 365 bits (939), Expect = 1e-99, Method: Composition-based stats. Identities = 96/339 (28%), Positives = 147/339 (43%), Gaps = 35/339 (10%) Query: 4 ETPSVKIVAITADEAGQRIDNFLRTQLKG-VPKSMIYRILRKGEVRVNKKRIK-PEYKLE 61 S+KI ++ A RID +L T LK +S + ++ G + +N K P K+ Sbjct: 7 NCSSIKISLLSDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVV 66 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 GD I + + ILYEDD I+V+NKP+G VH G Sbjct: 67 PGDSFLITVPAAQKLNIAQ--------ENIPLDILYEDDDIIVINKPAGLVVHPAPGNWT 118 Query: 122 GVIEGLRALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREK--- 170 G + + +VHRLD+DT+GV++VAK A + L EQ + Sbjct: 119 GTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKS 178 Query: 171 -GMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVR--VSQEGKPSETRFKVEERYA 227 +++ Y A+V G + APL + R V+ + + T ++ E Y Sbjct: 179 TRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYN 238 Query: 228 F-----ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDR------EFDRQLTEAGTG 276 +L++C TGRTHQIRVH + G+P+ D YG + A Sbjct: 239 KNSNFAVSLLKCHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILS 298 Query: 277 LNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 L R LHA +L F+HP + M + P+ E + ++KL Sbjct: 299 LARQALHAHSLSFSHPRNNQDMDFQVPIPEDMLTVIRKL 337 >UniRef50_C7RM94 Pseudouridine synthase n=11 Tax=Proteobacteria RepID=C7RM94_9PROT Length = 375 Score = 365 bits (938), Expect = 1e-99, Method: Composition-based stats. Identities = 93/311 (29%), Positives = 145/311 (46%), Gaps = 18/311 (5%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKR-IKPEYKLEAGDEVRIP 69 + + GQR+D L L +S + +R+G V V ++P ++L G+ + + Sbjct: 31 LRVPTACGGQRLDQVLARLLSQHSRSRLQDWIREGRVAVGGAVTVEPRFRLWGGETIAL- 89 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLR 128 E + I++EDD ++VL+K +G VH GSG G + GL Sbjct: 90 ------TESTDERAEASAPEEIPLRIVFEDDTLIVLDKQAGLVVHPGSGNWRGTLLNGLL 143 Query: 129 ALRPE---ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 P+ +VHRLD+DT+G+++VAK A L QL+ + +++ Y ALVRG Sbjct: 144 HHAPQLARVPRAGIVHRLDKDTTGLMVVAKTLEAQTDLVRQLQARSVKRCYQALVRGIV- 202 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245 V AP+ ++ V G+P+ T ++V ER+ TL+ C+ TGRTHQIR Sbjct: 203 EGAGIVDAPIGRHPTVRTRMAVV--SGGRPARTHYRVLERFVACTLIECALETGRTHQIR 260 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMD 305 VH HP+ D YG G R LHA L HP +G+ M + + Sbjct: 261 VHMTSIAHPLVGDPIYGGGASR---VPQGAVFPRQALHACRLALVHPASGKAMLWRSGVP 317 Query: 306 EGLKRCLQKLR 316 + + +LR Sbjct: 318 ADMAALIDRLR 328 >UniRef50_A5EX53 Pseudouridine synthase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EX53_DICNV Length = 322 Score = 365 bits (937), Expect = 2e-99, Method: Composition-based stats. Identities = 94/315 (29%), Positives = 142/315 (45%), Gaps = 20/315 (6%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + + R+D L ++ + G V +N K + + AGD++ Sbjct: 12 FIVDHNNHALRLDQVLARNYPEFSRNRWQDAINAGTVLLNGAAAKSKSLVCAGDQITGVL 71 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 + + E+ A L ILY DD I+V+NKP+G VH G + Sbjct: 72 TQEIQTEDSA--------QNLPLNILYADDDIIVINKPAGLVVHPAVGNHDNTLLNALLY 123 Query: 131 RP----EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 +VHRLD+DTSG +++A A L QL+ + M + YLALV G + Sbjct: 124 HFPQTKHLPRSGIVHRLDKDTSGAMVIAHSARAHTDLVRQLQNRSMGRIYLALVYGYITA 183 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 ++ P+ ++ + VR +GKP+ T +++EER+ TL+R TGRTHQIRV Sbjct: 184 GD-TIDLPIGRHAKDRLKMAVR--PDGKPAITHYRIEERWQTLTLLRVQLETGRTHQIRV 240 Query: 247 HTQYAGHPIAFDDRYGDREFDRQ-----LTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 H + HP+ D YG R F +A R LHA L HP T E+MR Sbjct: 241 HLSHHRHPLVGDKLYGARPFLASSLTELQRQALAEFPRQALHAVELHLHHPATNEIMRFT 300 Query: 302 APMDEGLKRCLQKLR 316 AP+ + + + LR Sbjct: 301 APLPDDMTQLFTILR 315 >UniRef50_A5WFS2 Pseudouridine synthase n=3 Tax=Psychrobacter RepID=A5WFS2_PSYWF Length = 420 Score = 364 bits (935), Expect = 2e-99, Method: Composition-based stats. Identities = 96/316 (30%), Positives = 154/316 (48%), Gaps = 22/316 (6%) Query: 12 AITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPV 71 +T ++AGQRID ++ + L+ G + VN K +Y+++ GD VR+ Sbjct: 108 TVTQEQAGQRIDKLAADMFTEHSRAQLQDWLKSGNLTVNDHNEKAKYRVKIGDIVRLEAK 167 Query: 72 RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG-LRAL 130 + + + I+YEDD ++V+NKP G VH G+G G + L Sbjct: 168 LEQHGSD--------QPEDIKLDIIYEDDSVIVINKPVGMVVHPGAGNWSGTLVNGLLYH 219 Query: 131 RPEA---RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ-- 185 P LVHR+D++TSG+L++ K ++A L EQL++K + + Y +V G Sbjct: 220 YPNQAHLPRAGLVHRIDKNTSGLLVIGKTKAAQLELQEQLKDKSVYRHYQCVVAGDAPSL 279 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF-ATLVRCSPVTGRTHQI 244 + +++ AP+ ++ Q + V + GK + T + +L+ TGRTHQI Sbjct: 280 ARQRTIDAPIGRHRTQRTKMTV--TSTGKTAITHIMKITPLSDTYSLLDVRLETGRTHQI 337 Query: 245 RVHTQYAGHPIAFDDRYGDREFDR-----QLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RVH + GHPI DD YG+R+ R + +A R LHA L F HP TGE + Sbjct: 338 RVHLSHIGHPIIGDDIYGNRQQLRAGLTPEQRQAIQSFPRQALHAYKLGFIHPETGESIE 397 Query: 300 IEAPMDEGLKRCLQKL 315 + AP+ + + L Sbjct: 398 LTAPLPQDIVELAHTL 413 >UniRef50_B2RIT5 Pseudouridine synthase n=80 Tax=root RepID=B2RIT5_PORG3 Length = 365 Score = 364 bits (935), Expect = 3e-99, Method: Composition-based stats. Identities = 97/316 (30%), Positives = 149/316 (47%), Gaps = 26/316 (8%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEA 80 RID FL ++ +S I + G + VN + +K Y+++ GD V + +R Sbjct: 45 RIDKFLVDRMNNATRSRIQQAAEAGAIFVNGRPVKSNYRIKPGDVVTLELLRPRRE---- 100 Query: 81 VSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR--------P 132 + I+YEDD +LV+NKP+G VH G G G + A P Sbjct: 101 ---LEIIPEDIPLDIVYEDDVLLVINKPAGLVVHPGHGNYTGTLVNALAYYLREDPEYDP 157 Query: 133 EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQ 192 L LVHR+D+DTSG+L+VAK+ A L +Q K + Y ALV G++ + ++ Sbjct: 158 MDPSLGLVHRIDKDTSGLLVVAKRAEAKSDLCKQFYYKTTHRSYRALVWGRFDYPIGTIT 217 Query: 193 APLLKNILQSGERIVRVSQE--GKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQY 250 + +++ + V GKP+ T ++V E A+ + + C TGRTHQIR H ++ Sbjct: 218 GNIGRDLKDRLQMAVFPPDGDIGKPAVTHYQVLEELAYVSWIECRLETGRTHQIRAHMKH 277 Query: 251 AGHPIAFDDRYGDREFDRQLTEAGTG---------LNRLFLHAAALKFTHPGTGEVMRIE 301 GH + D+RYG + R A R LHA L F HP TG M+ + Sbjct: 278 IGHTLFADERYGGDQILRGNNTANYRRFVQNCLAICPRQALHAKTLGFRHPVTGVEMQFD 337 Query: 302 APMDEGLKRCLQKLRN 317 + + L L++ R Sbjct: 338 SDIPADLTTLLERWRT 353 >UniRef50_B6AN83 Pseudouridine synthase n=2 Tax=Leptospirillum RepID=B6AN83_9BACT Length = 340 Score = 363 bits (934), Expect = 3e-99, Method: Composition-based stats. Identities = 93/327 (28%), Positives = 149/327 (45%), Gaps = 36/327 (11%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 + + E +R+D +L G +S + R+L + V +N +K+ GD +R+ Sbjct: 19 REFLVPRGEQPKRLDIYLSRNCLGFTRSRVQRLLEEKLVTINDIYPASSHKIRGGDRIRV 78 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 + + ILYEDD ++V++KP G VH G + G + Sbjct: 79 LIP--------PPRSQAAQPEDIHLEILYEDDDLIVISKPPGLVVHPAPGHASGTLVNGL 130 Query: 129 ALRPEAR-------------------FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRE 169 +++ LVHRLD+DTSGV++V K + + L Q ++ Sbjct: 131 LFHFQSQGDEQKKGEPEEEEEAERPLRAGLVHRLDQDTSGVMVVGKSETVVLDLMNQFKD 190 Query: 170 KGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY-AF 228 + + K YLALV+G + AP+ ++ + VR Q+GKPS TR++V E Y Sbjct: 191 RSVSKKYLALVKGILPKKRGEINAPIGRSTHDRKKFAVR--QDGKPSLTRYRVLETYHEN 248 Query: 229 ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALK 288 +L+ + +TGRTHQIRVH ++ G P+ D YG + R LHA L Sbjct: 249 YSLLEVTLLTGRTHQIRVHFRHLGFPLLGDAVYGSKGM------ENRNFPRQMLHAWKLA 302 Query: 289 FTHPGTGEVMRIEAPMDEGLKRCLQKL 315 F HP + M EAP+ +++L Sbjct: 303 FQHPRSAAKMEFEAPLPPDFVSAMKRL 329 >UniRef50_P50513 Ribosomal large subunit pseudouridine synthase D n=8 Tax=Sphingomonadales RepID=RLUD_ZYMMO Length = 317 Score = 363 bits (934), Expect = 4e-99, Method: Composition-based stats. Identities = 82/320 (25%), Positives = 140/320 (43%), Gaps = 21/320 (6%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKK---RIKPEYKLEAG 63 + V +T + G R+D L + + + + + ++ G V N + P +K+++ Sbjct: 2 PTEQVTLTEEMIGWRLDRALASLITRLSRERLKNLISSGCVS-NSQGALVRDPAFKIKSL 60 Query: 64 DEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV 123 D + P + + I++ED+H+LV+NKP+G VH +G Sbjct: 61 DCFTVDIPL--------PRPAHNEPQDIPLEIVFEDEHLLVVNKPAGMVVHPAAGNYDNT 112 Query: 124 IEGLRALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKD 175 + +VHR+D+DTSG+L+VAK A L Q + + + Sbjct: 113 LVNALLYHCAGKLSGIGGVARPGIVHRIDKDTSGLLVVAKTDPAHAGLAAQFADHSINRR 172 Query: 176 YLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCS 235 Y A+V G V APL ++ + + + GK + T +++ A+L+ C Sbjct: 173 YRAIVDGHPS-LQGHVDAPLARSSVNRQKMAIVSDGRGKRAVTHYRMITPLKNASLIECR 231 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTG 295 TGRTHQ+RVH GH + D YG + R LHAA L F HP +G Sbjct: 232 LETGRTHQVRVHMSSIGHSLLGDPVYGRSKKAHHALLQSLAFQRQALHAAHLGFIHPISG 291 Query: 296 EVMRIEAPMDEGLKRCLQKL 315 + + +A M + ++ + L Sbjct: 292 KQVDFDAEMPQDMQLLFKML 311 >UniRef50_C1ZGS9 Pseudouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGS9_PLALI Length = 345 Score = 363 bits (932), Expect = 7e-99, Method: Composition-based stats. Identities = 90/330 (27%), Positives = 149/330 (45%), Gaps = 24/330 (7%) Query: 4 ETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAG 63 + ++ + A G RID++L + R + +G+V VN +K +L Sbjct: 10 DDNPALVLTVEARAHGWRIDHYLSRLYPNFSRVAFQRTIEEGKVLVNGLPVKISRRLRVN 69 Query: 64 DEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV 123 D + ++ + + ILY+D+++ V+NK + VH G G G Sbjct: 70 DVIEFSLPAEPDQR--------VQPEDIPLDILYDDEYLCVINKTANMIVHPGRGNYRGT 121 Query: 124 IEGLRALRPEA-------RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDY 176 + G ++ +VHRLDRDTSGVL+VAK + + L Q E+ ++K+Y Sbjct: 122 LAGALQFHFDSLSDVAGQYRAGIVHRLDRDTSGVLVVAKDNTVHQHLSRQFEERSVEKEY 181 Query: 177 LALVRGQWQSHVKSVQAPLLKNILQSGERIVRVS-QEGKPSETRFKVEERYAFATLVRCS 235 A+V G+ Q V+ + + +V + + T ++V++R+ T V+ Sbjct: 182 HAIVWGEMQFDADYVETYVRVSFRNRERMMVCPPGDNARQAATFYEVQQRFRGFTYVKLQ 241 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRYGDRE--------FDRQLTEAGTGLNRLFLHAAAL 287 P TGRTHQ+RVH + GHPI D Y + + T ++R LHA L Sbjct: 242 PQTGRTHQLRVHMHHLGHPIIADRLYEGKTCVKLSDILPETPEEADETLIDRQALHARRL 301 Query: 288 KFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 F HP T + M EAP+ ++ L L+ Sbjct: 302 AFNHPVTKKRMVFEAPLPADFQKTLDTLKT 331 >UniRef50_O67638 Uncharacterized RNA pseudouridine synthase aq_1758 n=3 Tax=Aquificaceae RepID=Y1758_AQUAE Length = 316 Score = 362 bits (931), Expect = 9e-99, Method: Composition-based stats. Identities = 96/327 (29%), Positives = 143/327 (43%), Gaps = 24/327 (7%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYK 59 MK V + +E R+D FL +S I +++++G V VN + + KP K Sbjct: 1 MKI--SEVLEFKVEGEEE--RLDKFLARAYPDFSRSYIKKLVKEGLVYVNGEEVRKPSRK 56 Query: 60 LEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGL 119 L G+ V + P K + I+YED+ I V+ KP G VH G Sbjct: 57 LREGERVILHVPEPE--------PLDVKPENIPINIIYEDEDIAVVEKPCGLVVHPSPGY 108 Query: 120 SFGVIEGLRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGM 172 + G + +VHRLD++T+GV+++AK +A R+L Q +E+ Sbjct: 109 TSGTLVNALLYHIKDLSSIGGVERPGIVHRLDKETAGVMVIAKNNTAHRNLVRQFQERKT 168 Query: 173 QKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFA--T 230 +K Y LV+G + ++ P+ ++ + VR +EGK + T + V +RY T Sbjct: 169 EKFYKVLVKGLVKKDYGAIDTPIARHPVDRKRFWVR--KEGKEALTEYWVLKRYEKYEIT 226 Query: 231 LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFT 290 L++ TGRTHQIRVH GHP+ D YG + L A L F Sbjct: 227 LLKVKIHTGRTHQIRVHFASIGHPVLGDRTYGFKSSSVPKELLSLMGECNMLIAYHLGFY 286 Query: 291 HPGTGEVMRIEAPMDEGLKRCLQKLRN 317 HP GE M E E K L Sbjct: 287 HPTKGEWMVFEIEEPETFKSVYSWLEE 313 >UniRef50_A5GW76 Pseudouridine synthase n=1 Tax=Synechococcus sp. RCC307 RepID=A5GW76_SYNR3 Length = 316 Score = 362 bits (930), Expect = 9e-99, Method: Composition-based stats. Identities = 89/306 (29%), Positives = 147/306 (48%), Gaps = 20/306 (6%) Query: 19 GQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREE 78 R+D +L +Q ++ I + + G VRVN + + L GDE+++ Sbjct: 21 PMRLDRWLVSQRPEQSRARIQKFIEAGYVRVNGTTGRAKTPLRHGDEIKLWMPPPE---- 76 Query: 79 EAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG-LRALRPEAR-- 135 + + +L+ED+H++V+NKP+G VH G G + L P+ Sbjct: 77 ---PLPYLQPEPMDLDVLFEDEHLIVINKPAGLTVHPAPGNKDGTLVNGLLHHCPDLPGI 133 Query: 136 ----FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSV 191 +VHRLD+DT+G +++AK + AL L Q++++ ++YLA+V G ++ Sbjct: 134 SGKLRPGIVHRLDKDTTGCIVIAKSQQALVKLQVQIQKRVASREYLAVVHGVPAGESGTI 193 Query: 192 QAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYA 251 + ++ + + V S G+ + T + ++ER +L+R TGRTHQIRVH + Sbjct: 194 VGAIGRHPVDRKKYAVVSSDNGRYACTHWSLQERLGDYSLLRFKLDTGRTHQIRVHCAHR 253 Query: 252 GHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRC 311 HP+ D Y + + L LHA L HP TGE M EAP+ E L++ Sbjct: 254 NHPVVGDPTY------SRCRKLPIELPGQALHAVQLGLDHPITGERMVFEAPLPEVLEKL 307 Query: 312 LQKLRN 317 L LR Sbjct: 308 LAVLRK 313 >UniRef50_A7HV45 Pseudouridine synthase n=56 Tax=Alphaproteobacteria RepID=A7HV45_PARL1 Length = 482 Score = 362 bits (930), Expect = 1e-98, Method: Composition-based stats. Identities = 96/352 (27%), Positives = 158/352 (44%), Gaps = 47/352 (13%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKG---------VPKSMIYRILRKGEVRVNKKR---- 53 + V +TA++AG R+D +L L + ++ + +++ +G+V +K Sbjct: 133 ETRAVTVTAEDAGARLDKYLTEALGDKGEGDAPATLSRARMRQLIEQGQVSREEKAGAPK 192 Query: 54 --IKPEYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGT 111 P Y+++AG+ + + +P A+ I+YED ++V+ KP+G Sbjct: 193 LLTDPSYRVKAGERLSVSVP--------PPTPAKPAGQAIPLEIVYEDADLIVVMKPAGL 244 Query: 112 AVHGGSGLSF-GVIEGLRALRPE-------ARFLELVHRLDRDTSGVLLVAKKRSALRSL 163 VH G ++ L A E + +VHRLD++TSG+++VAK A + L Sbjct: 245 VVHPAPGNPDMTLVNALVAHCGETLSGIGGEKRPGIVHRLDKETSGLMVVAKTDRAHQGL 304 Query: 164 HEQL----REKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQE----GKP 215 Q R+ + + Y AL G Q+ +V A + ++ + + G+ Sbjct: 305 SAQFAAHGRDGKLTRAYTALTWGVPQTRKGTVDANIARSSHNRSKMATVRDRGEETGGRI 364 Query: 216 SETRFKVEERYAF--ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYG------DREFD 267 + T + V+ YA V C TGRTHQIRVH GHP+ D YG + Sbjct: 365 AITHYTVKTDYADGLVAEVECRLETGRTHQIRVHMTALGHPLLGDATYGTGMKSRKSKLS 424 Query: 268 RQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNAR 319 + A LNR LHA L F HP GE M +AP+ E ++ ++ L R Sbjct: 425 PEAQAALERLNRQALHAHHLGFEHPVAGEKMSFDAPLPEDMQELVRALEGVR 476 >UniRef50_B2A2J2 Pseudouridine synthase n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2J2_NATTJ Length = 328 Score = 361 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 83/319 (26%), Positives = 147/319 (46%), Gaps = 21/319 (6%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 + + G R+D +L Q++ + +S ++ V VN +K Y + +GD V++ Sbjct: 15 ELIPKEKDEGLRLDLYLSEQIEDLSRSKAKMLINNNSVMVNDNWVKASYSITSGDVVKVD 74 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 + ++ I+YED+++LV+NKP VH G+G + Sbjct: 75 TQLIQSE-------ITLIPQSIPLDIVYEDEYLLVVNKPRNMVVHPGAGNYRDTMVNALL 127 Query: 130 LRPEA-------RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 + +VHRLD+DTSG+L+VAK+ L E+++ + + + YLALV G Sbjct: 128 YHCQNLSDGTSYERPGIVHRLDKDTSGLLVVAKQNETHDILSEEIKNRRVARTYLALVIG 187 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF---ATLVRCSPVTG 239 + ++ P+ ++ + V GK + T+ ++ + + ++CS TG Sbjct: 188 DFSKKKATIDLPIGRDPRNRKKMAVVH--GGKRAITKVEMLRSFQNPEKISYLKCSLETG 245 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RTHQIRVH + G+P+ D Y R + + L LH+ +L FTHP + M Sbjct: 246 RTHQIRVHLSHLGYPLLGDPVY--RGKTGKNVDIDKNLTGQALHSFSLAFTHPVFKKTMV 303 Query: 300 IEAPMDEGLKRCLQKLRNA 318 AP+ + + KL + Sbjct: 304 FRAPLPSDMMNLISKLTRS 322 >UniRef50_Q87AR7 Ribosomal large subunit pseudouridine synthase D n=18 Tax=Gammaproteobacteria RepID=RLUD_XYLFT Length = 331 Score = 361 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 98/318 (30%), Positives = 145/318 (45%), Gaps = 20/318 (6%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 + + AG+R D L +S + ++ G+V +N ++P + G+ V + Sbjct: 14 RQTTVPDGAAGRRFDAVLAELFPEFSRSRLTEWIKSGDVLLNGVLVRPRDPVYGGEVVWL 73 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 + ILYED+H+ V+NKP+G VH G+G G + Sbjct: 74 QV--------MPDIRTDAVPQDIPLDILYEDEHVFVINKPAGLVVHPGAGNPDGTLVNAL 125 Query: 129 ALRPEA----RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQW 184 R A +VHRLD+DTSGV++VA+ A +L EQL + + + YLA+V Sbjct: 126 LHRDPALAAVPRAGVVHRLDKDTSGVMVVARTLQAQTALVEQLSSRQVHRQYLAVVVSAL 185 Query: 185 QSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQI 244 S +V A + ++ V S GK + T +++ ER+ T + C TGRTHQI Sbjct: 186 VSG-GTVNAAIERHPRDRLRMEV--SDTGKEAVTHYRLRERFRAHTALECRLDTGRTHQI 242 Query: 245 RVHTQYAGHPIAFDDRYGD-----REFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RVH + HPI D YG + L G R LHA L+F HP +R Sbjct: 243 RVHMAHLRHPIVGDRLYGGSLKLPKGGTDALVAMLRGFKRQALHAEVLEFLHPVRALPVR 302 Query: 300 IEAPMDEGLKRCLQKLRN 317 I AP+ E L + L LR Sbjct: 303 IVAPVPEDLCQLLAALRE 320 >UniRef50_D1RB31 Pseudouridine synthase n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1RB31_9CHLA Length = 319 Score = 361 bits (927), Expect = 2e-98, Method: Composition-based stats. Identities = 92/314 (29%), Positives = 145/314 (46%), Gaps = 27/314 (8%) Query: 11 VAITADEAGQRIDNFLRTQLK-GVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 I EAG R+D L + K ++ ++ KG V +N + +K +K GD+V + Sbjct: 12 FIIQEMEAGIRLDKVLADRYKSNGSRTYFQMLIEKGLVLLNGEPVKKRFKPNVGDDVELF 71 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 E + + ILYED+H+L++NKP G VH G G Sbjct: 72 FAAAPEID--------LIPEQIPLNILYEDEHLLIINKPVGMVVHPAPGNWTGTFVNALL 123 Query: 130 LRP---------EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 ++ +VHRLD++TSGVL+ AK S + L E + + K+Y A+ Sbjct: 124 YHCGYSLSDASVDSIRPGIVHRLDKETSGVLVAAKTLSVQQKLMELFAARQVYKEYWAIC 183 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 G + P+ ++ + + VR ++GK + T + E L + TGR Sbjct: 184 LGNP--GNCELNWPIGRHPIHRKQMTVR--EDGKEALTFCETLEVGNEICLAKLILSTGR 239 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH ++ GHPI D YG ++ + + R LHA L F HP T + + + Sbjct: 240 THQIRVHLKHKGHPILGDSIYGSKQVNMRYR-----AERQMLHARKLAFIHPITQQKIEV 294 Query: 301 EAPMDEGLKRCLQK 314 EAP+ ++ CL+K Sbjct: 295 EAPLPADMEECLRK 308 >UniRef50_Q2W2D5 Pseudouridine synthase n=39 Tax=Bacteria RepID=Q2W2D5_MAGSA Length = 505 Score = 360 bits (926), Expect = 3e-98, Method: Composition-based stats. Identities = 89/333 (26%), Positives = 149/333 (44%), Gaps = 29/333 (8%) Query: 4 ETPSVKIVA---ITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYK 59 + P + + + +EAG R+D +L +L + ++ I ++ G V + + I + Sbjct: 180 DMPVTQRLTPPAVEPEEAGTRLDRWLALRLPELSRTRIKGLMEDGRVSLEETTISDASLR 239 Query: 60 LEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGL 119 ++ G + +P + +A ++YED+ ++V++KP+G VH G Sbjct: 240 VKPGQCFVVDVP--------PDAPAQPEPQDIALTVVYEDEDLIVIDKPAGMVVHPAPGN 291 Query: 120 SFGVIEGLRALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG 171 + + +VHR+D+DTSG+L+ AK +A R L Q Sbjct: 292 PDETLVNALLAHCGESLAGIGGVKRPGIVHRIDKDTSGLLVAAKTDAAHRGLATQFAAHT 351 Query: 172 MQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF--A 229 +++ Y ALV G ++ + +N + V V GKP+ TR++V + +A Sbjct: 352 LERAYWALVWGTPSPRQGEIEGNIGRNPNDRKKMAV-VKSGGKPALTRYRVLKSFAGGAV 410 Query: 230 TLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDRE------FDRQLTEAGTGLNRLFLH 283 +LV C TGRTHQIRVH GHP+ D YG ++ A R LH Sbjct: 411 SLVECRLATGRTHQIRVHMTTQGHPLVGDPVYGRIRGHKGVVLPPEVKTALIQFPRQALH 470 Query: 284 AAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLR 316 A L F+HP G +R E+ M + +Q L Sbjct: 471 AYLLGFSHPTKGYDVRFESGMPLDINALMQILE 503 >UniRef50_A0LPH5 Pseudouridine synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LPH5_SYNFM Length = 344 Score = 360 bits (925), Expect = 4e-98, Method: Composition-based stats. Identities = 97/328 (29%), Positives = 155/328 (47%), Gaps = 21/328 (6%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 +P + +E +R+D FL + +S + +++R+G V VN +K Y++ Sbjct: 3 TRNSPPDLTFHVDVEEKLRRLDVFLSARSPDCSRSQVQKLIREGRVTVNGLPVKASYEIR 62 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 +GD + + + P + IL+EDD +LVLNK G VH G+G Sbjct: 63 SGDCIAVWLPEAVGEDSLQPRP-------MPLEILFEDDDVLVLNKAPGVIVHPGAGHEE 115 Query: 122 GVI-EGLRAL------RPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQK 174 G + GL A R R +VHRLDR TSG L+VAK A L Q + + K Sbjct: 116 GTLVHGLLAHCSRLASRGAPRRPGIVHRLDRGTSGALMVAKSERAYLELIRQFKHHEVGK 175 Query: 175 DYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRC 234 +YLALV G ++ + ++ + V + + G+ + +++KV + +L+R Sbjct: 176 EYLALVYGTMAGASGEIRTGMGRHPVDRKRMAV-LEKGGREAVSQWKVAVAWGEVSLLRV 234 Query: 235 SPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQ------LTEAGTGLNRLFLHAAALK 288 TGRTHQIRVH + HP+ D+ YG + + L E ++R LHA L Sbjct: 235 VIKTGRTHQIRVHLSHMQHPVVGDETYGGGKRKARAVKSDVLRELLMEVDRQMLHAVGLA 294 Query: 289 FTHPGTGEVMRIEAPMDEGLKRCLQKLR 316 F HP +G + AP+ L+++R Sbjct: 295 FRHPVSGADLSFTAPLPPDFAGLLERIR 322 >UniRef50_Q6AJM1 Pseudouridine synthase n=1 Tax=Desulfotalea psychrophila RepID=Q6AJM1_DESPS Length = 327 Score = 360 bits (925), Expect = 4e-98, Method: Composition-based stats. Identities = 94/317 (29%), Positives = 153/317 (48%), Gaps = 27/317 (8%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 +++ ++ G R+D FL L V +++I +K V V+ + K Y+L+ G+ V Sbjct: 20 EFSVSYNQRGTRLDQFLAFSLPDVSRALITLSNKKELVLVDDEVKKSSYRLKEGETVTCA 79 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 P + + +YEDD +LVL+KP G VH G+G + G + Sbjct: 80 L--------WQAPPLSLEPQQVDFESIYEDDSLLVLSKPPGIVVHPGNGNTEGTLVHGLL 131 Query: 130 LR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 +A +VHRLD+DTSG ++VAK +LR+L + +E+ + K Y ALV G Sbjct: 132 YHCREIGGVGDAIRPGIVHRLDKDTSGAMVVAKDERSLRTLVDSFKERQVYKVYHALVCG 191 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY----AFATLVRCSPVT 238 + + + AP+ ++ + + + + GK + T ++V E + +L+R T Sbjct: 192 IPKKYEGRIVAPIGRHSVHRQKMAIS-ERTGKFAATNWQVVEVFETKDGPYSLLRVHIET 250 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM 298 GRTHQIRVH G PIA D YG + + R LHA+ L+ HP TG M Sbjct: 251 GRTHQIRVHMSSIGCPIAGDQVYGSKRQN-------PAFARQMLHASRLRLPHPVTGRTM 303 Query: 299 RIEAPMDEGLKRCLQKL 315 AP+ + + L+ + Sbjct: 304 SFTAPLWQDFQEVLEDM 320 >UniRef50_A3RGY8 Pseudouridine synthase n=1 Tax=uncultured bacterium RepID=A3RGY8_9BACT Length = 353 Score = 360 bits (925), Expect = 4e-98, Method: Composition-based stats. Identities = 92/323 (28%), Positives = 145/323 (44%), Gaps = 17/323 (5%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 +T + I AG+R+D L + V +S + + + G V VN ++ + L Sbjct: 26 APDTSPALTLRIDERYAGERLDKALAFLIPDVSRSRLQQWVVAGAVTVNGGAVRARHTLT 85 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 GD V++ P + P + +++EDD ILVLNKP VH +G Sbjct: 86 FGDVVKVTPQPAPDAAAYKPEP-------MPLEVIFEDDAILVLNKPPKLVVHPAAGHWS 138 Query: 122 GVI-EGLRALRP---EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 G + GL A P + +VHRLD DTSG+++VAK +A L QL+ + + ++Y Sbjct: 139 GTLLNGLLAYAPTLIDVPRAGIVHRLDADTSGLMVVAKTLAAQTDLVRQLQSRTVTREYW 198 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFA----TLVR 233 ALV G + A + ++ V ++ KP+ T + + A + + Sbjct: 199 ALVLGVPSQR-GVIDAAIGRDPRNPLRFKVSTTEAAKPARTHYATLDSTKNAGADISWLA 257 Query: 234 CSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGT-GLNRLFLHAAALKFTHP 292 C TGRTHQIRVH ++ GHP+ D Y R R A +R LHA L HP Sbjct: 258 CRLETGRTHQIRVHLEHVGHPLIGDPVYRRRLPPRGEPAARWKEFDRQALHACRLALDHP 317 Query: 293 GTGEVMRIEAPMDEGLKRCLQKL 315 + + + L + + +L Sbjct: 318 VSRQRLNWFHSPAADLAQLMHEL 340 >UniRef50_C8P3R0 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3R0_ERYRH Length = 308 Score = 360 bits (925), Expect = 5e-98, Method: Composition-based stats. Identities = 94/324 (29%), Positives = 150/324 (46%), Gaps = 26/324 (8%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 E ++ + + G RID ++ + +S++ ++ G + VN +KP +L+ Sbjct: 1 MKEVKNMNKLIVEEMFDGMRIDQYMALAVTDYSRSVLQTWIKNGNITVNGNVVKPNLRLK 60 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG--L 119 D V + I+YEDD ILV+NKP G VH Sbjct: 61 EDDVVEYEITEEQ---------ISIVPVPMDLDIVYEDDAILVVNKPKGLIVHPSPSTLN 111 Query: 120 SFGVIEGLRAL------RPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQ 173 ++ GL A +VHR+D+DT+G+L+VAK A L E L+++ + Sbjct: 112 QPTLVHGLLAHTTQLSDLNGELRPGIVHRIDKDTTGLLVVAKTNEAHEILVEDLKQRLIS 171 Query: 174 KDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVR 233 ++Y+A+V Q++ +V AP+ ++ V Q K + T F + ER+ +++R Sbjct: 172 REYVAIVHHQFKHQSATVDAPIGRDPKNRQRMAVT-DQNSKQAVTHFYLAERFNDFSVLR 230 Query: 234 CSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPG 293 C TGRTHQIRVH QY HPI D Y + N LHA L THP Sbjct: 231 CKLDTGRTHQIRVHAQYIKHPIVGDQTYSYKNTWET--------NGQCLHAQKLTLTHPV 282 Query: 294 TGEVMRIEAPMDEGLKRCLQKLRN 317 + EVM EA + + +K ++++R Sbjct: 283 SKEVMTFEAELPQTMKDVIEEIRR 306 >UniRef50_Q1ILA4 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILA4_ACIBL Length = 333 Score = 360 bits (924), Expect = 5e-98, Method: Composition-based stats. Identities = 93/331 (28%), Positives = 157/331 (47%), Gaps = 30/331 (9%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 + + ++AD+A R+D +L + L V ++ + ++ ++ V+ K KP YKL + + + Sbjct: 5 QHIQVSADDANIRLDQYLVSHLPDVSRARVQALIDDEKILVDGKSSKPSYKLRGSEVIDV 64 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF-----GV 123 E P + ++YEDD + V+NKP+G VH G+G + G Sbjct: 65 VG-------EYQPPPLRAIPEDIPLDVVYEDDDLAVINKPAGMMVHVGAGATEEERNRGT 117 Query: 124 IEGLRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDY 176 + R +VHRLD++TSG+++VAK A R L EQ + + K Y Sbjct: 118 LVNALLYRFRALSEVGGDMRPGIVHRLDKETSGLIVVAKNDVAHRKLAEQFSSRRVHKKY 177 Query: 177 LALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEER----YAFATLV 232 +ALV G + ++ P+ +++ + R S G+ + + ++V+E+ Y LV Sbjct: 178 VALVHGWPKKLKGTINLPIARDMSRRTRMTTRGS-GGRDALSHYEVKEKIESPYGKFALV 236 Query: 233 RCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDR------EFDRQLTEAGTGLNRLFLHAAA 286 TGRTHQIRVH GHP+ D YG + + + L R FLHAA Sbjct: 237 EVKIETGRTHQIRVHMASLGHPVVGDTLYGAPGELRVTKALKGMPSKMASLERNFLHAAE 296 Query: 287 LKFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 ++ P TG+ +R + L+ + LR+ Sbjct: 297 IELQQPATGKALRFVTKVPAALEDFAETLRH 327 >UniRef50_A0L8J2 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8J2_MAGSM Length = 328 Score = 360 bits (924), Expect = 6e-98, Method: Composition-based stats. Identities = 132/325 (40%), Positives = 190/325 (58%), Gaps = 10/325 (3%) Query: 1 MKTETPS--VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEY 58 M + V+ V + + AG R+D FL++Q VP S+I R++R G+VRVNK R + + Sbjct: 1 MPENSKPTAVRTVQVDEEYAGSRLDKFLKSQFPSVPFSLIQRLMRTGQVRVNKGRARGDR 60 Query: 59 KLEAGDEVRIPP---VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHG 115 +L GD VR+PP E E L + A + L+ D ILVLNKP+G VHG Sbjct: 61 RLAFGDWVRLPPVTPPTAEELEHPNKEKILHQSADVEARTLHRDGWILVLNKPAGIPVHG 120 Query: 116 GSGLSFGVIEGLRALRPE---ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGM 172 GSG +GV++ +RA + EL HRLD++TSG+LL + A+R L E +RE + Sbjct: 121 GSGHQWGVVDAVRASLEKLGIEAQAELCHRLDKETSGLLLFGLRPRAVRLLTEAMRENQV 180 Query: 173 QKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLV 232 K YL LV+G + + PL K ++ GER+V V Q G+ + T ++V Y A+L+ Sbjct: 181 TKTYLTLVQGVPAARQGVINQPLSKGNVRGGERMVVVEQGGQRAVTHYRVLRSYGVASLL 240 Query: 233 RCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHP 292 TGRTHQIRVH Q+ GHP+A D +YGD+ F++ + E GL RLFLHA+ L F HP Sbjct: 241 EVQLETGRTHQIRVHMQWLGHPVAGDGKYGDKAFNKWMRE--RGLKRLFLHASELAFRHP 298 Query: 293 GTGEVMRIEAPMDEGLKRCLQKLRN 317 + + +AP+D+ L R L+ L+ Sbjct: 299 ENEQKLAYQAPLDDELTRVLEGLKR 323 >UniRef50_D2R7T3 Pseudouridine synthase, RluA family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7T3_9PLAN Length = 355 Score = 359 bits (923), Expect = 7e-98, Method: Composition-based stats. Identities = 104/325 (32%), Positives = 145/325 (44%), Gaps = 23/325 (7%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKR--IKPEYKLEAGDEVR 67 + + EA R+D FL +L + + R++ G V +N R +K Y++ GD V Sbjct: 38 ELVVEEREADGRLDQFLALRLHRYSRMQLRRVIDAGGVLLNGSRAKVKVAYRVSTGDRVS 97 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 I + + IL+ED+H++ +NKP G VH G G + Sbjct: 98 IVLPEMPSAGPN--------PEKIPLDILFEDEHLIAVNKPPGMVVHPARGHWSGTLTSA 149 Query: 128 RALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 A +VHRLDRDTSGV++VAK SL Q ++ K+Y A+ Sbjct: 150 LAFHFQQLSTVGGQHRPGIVHRLDRDTSGVIIVAKTDPVHFSLAAQFADRTTAKEYFAIT 209 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRV-SQEGKPSETRFKVEERYAFATLVRCSPVTG 239 G V P+ + + +R + +ET F V ER+A V C P TG Sbjct: 210 AGVPDRDRDVVSQPIGIHPFHREKMAIRPGHSTSRDAETMFHVLERFAQHAAVECLPKTG 269 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTG-----LNRLFLHAAALKFTHPGT 294 RTHQIRVH + P+ D YG R Q G LNR LHA L HP T Sbjct: 270 RTHQIRVHLAHVRTPVLCDKLYGGRAEITQGELVRDGSTEVVLNRQALHARKLSINHPKT 329 Query: 295 GEVMRIEAPMDEGLKRCLQKLRNAR 319 GE + IEAP+ L+R L LR+ + Sbjct: 330 GERLTIEAPLPADLQRVLDLLRSTK 354 >UniRef50_C8WW59 Pseudouridine synthase n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WW59_ALIAD Length = 314 Score = 358 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 100/321 (31%), Positives = 155/321 (48%), Gaps = 30/321 (9%) Query: 11 VAITADEAGQRIDNFLRTQLKG----VPKSMIYRILRKGEVRVNK-KRIKPEYKLEAGDE 65 ++A++AG+R+D +L +L+ V ++ + R L G +R + R+K +EAGD Sbjct: 9 YEVSAEDAGERLDRWLTDRLQEDDIEVSRTQVQRWLDDGFIRRARPGRLKASDPVEAGDL 68 Query: 66 VRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIE 125 + L + V+ YEDD ++V++KP G VH G+G G + Sbjct: 69 YEVDVPEEE-------PLELVPDDGVPFVVAYEDDDVIVVDKPRGVVVHPGAGHMRGTLV 121 Query: 126 GLRALRP-------EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLA 178 R A +VHR+D+DTSG+++ AK A R+L E R ++++Y+A Sbjct: 122 NGLLARGTPLCTLAGALRPGVVHRIDKDTSGLVVFAKSDRAYRALVEAFRAHDVEREYVA 181 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVT 238 + G+ ++ P+ ++ VR Q GK + T F+V E +A + +R T Sbjct: 182 IAHGRMPHREGTIDMPIARDPADRQRMAVR--QGGKRAVTHFEVLESFAKYSYLRLRLET 239 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM 298 GRTHQIRVH GHPIA D YG R ++ LHA L FTHP G + Sbjct: 240 GRTHQIRVHLAAIGHPIAGDPVYGPRH--------TLPIDGQALHARTLGFTHP-DGRRL 290 Query: 299 RIEAPMDEGLKRCLQKLRNAR 319 R E+ + + R L LR R Sbjct: 291 RFESAVPSDMARLLDGLRQGR 311 >UniRef50_Q2S3B7 Pseudouridine synthase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3B7_SALRD Length = 349 Score = 358 bits (920), Expect = 1e-97, Method: Composition-based stats. Identities = 93/347 (26%), Positives = 148/347 (42%), Gaps = 50/347 (14%) Query: 14 TADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRV 73 + G RID +L ++ I R ++KG ++VN +K Y +E GDE+ +R Sbjct: 3 ETETGGPRIDKYLTRFYPEASRTKIQRAIKKGHLKVNGTDVKKSYGVEPGDEIVFRLIR- 61 Query: 74 AEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPE 133 P + A+ +++E D +LV+NKP+G VH G G + + Sbjct: 62 -------KPPMQAEPEAIPLDVVHEGDDLLVVNKPAGMVVHPAPGHRSGTLVHALLHHVD 114 Query: 134 A---------------------------------RFLELVHRLDRDTSGVLLVAKKRSAL 160 +VHRLD+ TSG+L+VAK+ A Sbjct: 115 GGEVAADDERDEVSEDEVGLSLVNALPQSPDHPVVRPGIVHRLDKGTSGLLVVAKRGRAH 174 Query: 161 RSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRF 220 + L EQ + + + Y A+V G++ +++ + ++ V EGK + T + Sbjct: 175 QPLAEQFKAHTVDRRYRAIVWGRFAPSDGTIEGAIGRDPHHRQRMAVVPEDEGKWARTHY 234 Query: 221 KVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREF---------DRQLT 271 + E +A ++V TGRTHQIRVH + GHP+ D +YG + Sbjct: 235 ETVETHAHTSVVEFELETGRTHQIRVHARAQGHPLLGDPKYGGQRVRYGTQSGTRRTFYD 294 Query: 272 EAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNA 318 + L LHA L F HP T E +R EA +R L++LR Sbjct: 295 QLFETLPHPALHAYRLGFDHPTTEERLRFEADPPPAWRRVLRELRQE 341 >UniRef50_UPI00016C3FBA ribosomal large subunit pseudouridine synthase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3FBA Length = 354 Score = 358 bits (920), Expect = 2e-97, Method: Composition-based stats. Identities = 96/341 (28%), Positives = 152/341 (44%), Gaps = 31/341 (9%) Query: 2 KTETPSVKI-----VAITADEAGQRIDNFLRTQLK-GVPKSMIYRILRKGEVRVNKKRI- 54 TPSV+ + + G R+D +++ L +S++ R + G V +N + + Sbjct: 19 APVTPSVRFREPLDLLVMVKSEGMRLDQYVQLHLGADWSRSVVQRAIESGGVLLNGRPVL 78 Query: 55 KPEYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVH 114 KP YK+ D + + + + ILY+D+ + ++NKP+ VH Sbjct: 79 KPSYKVRKNDRLHVTMPEPTH--------EIPVPEDIPLDILYQDEWLALVNKPADMVVH 130 Query: 115 GGSGLSFGVIEGLRALRP--------EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQ 166 G G + +VHRLD+DTSGV+LVAK R L Q Sbjct: 131 PAKGNWSGTLVNALQWHFREHLSTGAGHLRAGIVHRLDKDTSGVILVAKDDLTHRDLAMQ 190 Query: 167 LREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY 226 + + K+Y+A+ G+ + ++ L + + IV + K + + ++V ER+ Sbjct: 191 FESRKVFKEYVAIAAGELERDSDYIEGALKMHPYDRLKMIVSTDPDAKHALSYYEVLERF 250 Query: 227 AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDR--------QLTEAGTGLN 278 TLV+ P TGRTHQIRVH + G + D YG R + E L Sbjct: 251 RGFTLVKVQPRTGRTHQIRVHLLHVGCAVLADKIYGGRAQVKLSEIAPGTPPAEDEVLLG 310 Query: 279 RLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNAR 319 R LHA L+F HP TG+ + EAP+ ++R L LR R Sbjct: 311 RQALHAFRLRFQHPRTGQWIEAEAPLPPDMRRTLDALRQHR 351 >UniRef50_B3PEU4 Pseudouridine synthase n=18 Tax=Gammaproteobacteria RepID=B3PEU4_CELJU Length = 349 Score = 357 bits (917), Expect = 3e-97, Method: Composition-based stats. Identities = 164/315 (52%), Positives = 218/315 (69%), Gaps = 6/315 (1%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 +V+ + I A+ AGQR+DNFL QLKGVPKS IY ++RKGEVRVNK R +P+YKL AGD V Sbjct: 34 TVRFLTIDAELAGQRLDNFLMAQLKGVPKSRIYNLVRKGEVRVNKGRSRPDYKLCAGDLV 93 Query: 67 RIPPVRVAEREEEAVSPHLQKVAAL-ADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIE 125 R+PPVR AE A + ++ AL +L+E++ +LV+NKP G AVHGGSG++ G+IE Sbjct: 94 RVPPVRTAEARVAAPAKAGNQLVALLDQSVLFENEGLLVINKPPGLAVHGGSGVNLGLIE 153 Query: 126 GLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREK---GMQKDYLALVRG 182 LR +RPEAR+LELVHRLDRDTSG ++VAKKRS LR L LR+K ++K Y ALV G Sbjct: 154 TLRQMRPEARYLELVHRLDRDTSGCIMVAKKRSYLRHLQAALRDKVEGQIEKVYCALVVG 213 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 W + + V APLL+ + + ER VRV +GKPS T F V +RY TLV PVTGRTH Sbjct: 214 HWPARLHQVNAPLLRTEVGADERYVRVHPDGKPSLTLFNVIQRYQGFTLVEARPVTGRTH 273 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH ++AGH + D++YGD + + + G+ RLFLHA++L F PG ++ +EA Sbjct: 274 QIRVHARHAGHGLVGDEKYGDDDINLHMRNQ--GIKRLFLHASSLGFCLPGEAQMTWVEA 331 Query: 303 PMDEGLKRCLQKLRN 317 P+ + L + L L + Sbjct: 332 PLPQDLAQPLSCLES 346 >UniRef50_C8PVB8 Pseudouridine synthase n=2 Tax=Moraxellaceae RepID=C8PVB8_9GAMM Length = 380 Score = 357 bits (917), Expect = 4e-97, Method: Composition-based stats. Identities = 93/324 (28%), Positives = 155/324 (47%), Gaps = 25/324 (7%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 ++ + +++ G+RID + I L GE+ VN KP+Y+L+ D + Sbjct: 66 IQNYTVNSEQIGERIDKIAALVFSDYSREQIKNWLESGELTVNGAAQKPKYRLKPNDMLV 125 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG- 126 + A++++ + ILYED+ +LV+NKP G VH G+G G + Sbjct: 126 LKASLTAQQQD--------LPENIPLDILYEDEAVLVINKPVGLVVHPGAGNGSGTLVNA 177 Query: 127 LRALRPEA---RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 L P++ LVHR+D++TSG++++AK + L QL++K + + Y A+V Sbjct: 178 LLFHYPDSRTLPRAGLVHRIDKETSGLMVIAKDSQSQLHLINQLKDKSVYRLYQAIVLAS 237 Query: 184 WQS--HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFA-TLVRCSPVTGR 240 +++ AP+ ++ Q + V GKP+ T + + A +LV TGR Sbjct: 238 AAELARHRTIDAPIGRHPTQRTKMAVV--SSGKPAVTHLEKITAISDAVSLVSVRLETGR 295 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTG--------LNRLFLHAAALKFTHP 292 THQIRVH G P+ D YG + L + R LHA L F HP Sbjct: 296 THQIRVHLSNLGFPLLGDPLYGAARKNAILLKTLDDDQKHIVQQFQRQALHAYELGFIHP 355 Query: 293 GTGEVMRIEAPMDEGLKRCLQKLR 316 TGE ++++A + E +++ L L+ Sbjct: 356 KTGEPIKVQARLPEDMQQLLDTLK 379 >UniRef50_D1ANU4 Pseudouridine synthase n=14 Tax=Fusobacteriaceae RepID=D1ANU4_SEBTE Length = 305 Score = 356 bits (916), Expect = 4e-97, Method: Composition-based stats. Identities = 86/314 (27%), Positives = 151/314 (48%), Gaps = 26/314 (8%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 ++ + E G+R+D ++ + + ++ I ++++ G + VN K+ KP YK+E D + Sbjct: 1 MEKIIFEISEEGKRLDLYIAER-TELTRTRIQQLIKDGNINVNNKKSKPSYKVEKNDFIE 59 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 + E + + ILYED I V++K +G VH G G + Sbjct: 60 MIIPDEKEID--------LVPENINIKILYEDSDIAVIDKEAGIVVHPSHGHESGTLVNA 111 Query: 128 RALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 +VHRLD+DTSG+L++AK +A L E G++K Y+A++ Sbjct: 112 VMYHIKDLSGINGEIRPGIVHRLDKDTSGLLIIAKNDTAHLRLSEMFGSSGIRKTYIAIL 171 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 +G+ ++ + ++ + V V GK + T F+V ++ +LV+ + TGR Sbjct: 172 KGKINKESGKLETLIGRDPKDRKKMAV-VKTNGKTAITYFQVLDKNEKFSLVKVNIQTGR 230 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH +Y G+P+ D YG R LHA L+F HP T + M+I Sbjct: 231 THQIRVHMKYLGYPVLGDSVYG---------RDNKIAGRQMLHAYKLEFLHPVTQKAMKI 281 Query: 301 EAPMDEGLKRCLQK 314 + + + ++ L++ Sbjct: 282 ISELPQDFEKALKE 295 >UniRef50_C9LM35 Pseudouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LM35_9FIRM Length = 308 Score = 356 bits (915), Expect = 5e-97, Method: Composition-based stats. Identities = 92/317 (29%), Positives = 148/317 (46%), Gaps = 26/317 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEV-RVNKKRIKPEYKLEAGDEVRIP 69 ++ + G+R+D FL+ + G+ +S + + ++ G V + KK I Y + GD + Sbjct: 6 YLVSVADEGKRLDQFLKER-TGLTRSEVQKWIKAGNVSLLPKKMIHSNYHVSEGDRISFF 64 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 ++E + ILYED+ ++V+NK G VH G+G + G + Sbjct: 65 WEEKKKQE--------LIGQNIPLDILYEDNDMIVINKRRGVVVHPGAGNTEGTLVNALL 116 Query: 130 LR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 + +VHRLD+DTSGV++ AK A L +++ Q+ Y+ALV Sbjct: 117 FHCGEQLRSVGDPERPGIVHRLDKDTSGVMVAAKSERAYGILQKEIASHKAQRCYIALVH 176 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 GQ + ++ PL ++ + V + + G+P+ T F V E + + C TGRT Sbjct: 177 GQMEGDTGVIRLPLGRSTKDRMKWDV-LHETGRPAVTHFHVIEYLPHYSWIECKLETGRT 235 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVH + H + D YG + + LH+ L+ HP TGEVM E Sbjct: 236 HQIRVHMAHIRHAVVNDPLYG-------WKKDHFPIKGQALHSHTLELCHPITGEVMHFE 288 Query: 302 APMDEGLKRCLQKLRNA 318 AP+ E + CL R Sbjct: 289 APVPEDMINCLNLARKE 305 >UniRef50_C0N6T7 Pseudouridine synthase n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N6T7_9GAMM Length = 318 Score = 356 bits (915), Expect = 5e-97, Method: Composition-based stats. Identities = 161/315 (51%), Positives = 212/315 (67%), Gaps = 3/315 (0%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 K ++ V+ + I+ +AGQRIDNFL T KGVPKS IYR +RKGEVRVNK RIK YK++ Sbjct: 5 KPQSQKVQFIEISPSQAGQRIDNFLLTLEKGVPKSRIYRAIRKGEVRVNKGRIKQTYKIQ 64 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 AGD VR+PP+RVAERE + L I++EDD +LVLNKPSG AVH GS + Sbjct: 65 AGDIVRVPPLRVAEREAPTHVSESLRQQLLQ-DIIFEDDSMLVLNKPSGLAVHAGSQIQV 123 Query: 122 GVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 GVIE R ++PE FLELVHRLDRDTSG LL+AK R +L +L +Q+ + K YL L++ Sbjct: 124 GVIEAFRIIKPELAFLELVHRLDRDTSGCLLLAKSRDSLLNLQQQMLSDQIDKRYLTLLK 183 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 G + + V+ PLLKN + SGER+V+V+ +GK ++T F ++ + A L TGRT Sbjct: 184 GILPNAEELVEQPLLKNTVSSGERMVKVTPDGKRAKTLFIRQQDLSLAQLTEVKLYTGRT 243 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVH + HP+A DD+YGDREF++ L GL RLFLHA L HP +GE M++E Sbjct: 244 HQIRVHAAWTQHPVAGDDKYGDREFNKTLK--SFGLKRLFLHAWRLGIRHPVSGEPMQLE 301 Query: 302 APMDEGLKRCLQKLR 316 AP+ L++ + KL Sbjct: 302 APLPTALQQVITKLE 316 >UniRef50_A6SXT6 Pseudouridine synthase n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SXT6_JANMA Length = 342 Score = 356 bits (915), Expect = 6e-97, Method: Composition-based stats. Identities = 88/313 (28%), Positives = 142/313 (45%), Gaps = 23/313 (7%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 + + D G R+D L T + +S + + + G V V+ + + + + ++V I Sbjct: 39 ELDLNPDVCGVRLDKVLSTLVPQYSRSRLQQWIDGGHVSVDGEVARAKMTVYGDEKVVIY 98 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLR 128 P E E K A+ I++ED +LV+NKP+G VH +G G + GL Sbjct: 99 PQPAPEDEAF-------KPEAMDLAIVHEDAEMLVINKPAGLVVHPAAGNWSGTLLNGLL 151 Query: 129 ALRP---EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 P +VHRLD+DTSG+++VAK A L QL+ + ++++YLALV G Sbjct: 152 HYLPSISGVPRAGIVHRLDKDTSGLMVVAKTLIAHTDLVRQLQARTVKREYLALVWGTP- 210 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEER----YAFATLVRCSPVTGRT 241 + + A + ++ + V + KP+ T F+ +L+ C TGRT Sbjct: 211 NITGKIDASIGRHARDRIKMAVSENLTAKPAVTHFQRLATGMLDGRPVSLMLCRLETGRT 270 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVH Q G + D YG + T R LHA L HP +GE + Sbjct: 271 HQIRVHMQSIGFALVGDGLYGKQHL-------TTVFPRQALHARRLGLIHPVSGEAVEWS 323 Query: 302 APMDEGLKRCLQK 314 + + + + + Sbjct: 324 SELPQDFAELIAR 336 >UniRef50_D1CBT6 Pseudouridine synthase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBT6_THET1 Length = 313 Score = 355 bits (913), Expect = 9e-97, Method: Composition-based stats. Identities = 100/310 (32%), Positives = 156/310 (50%), Gaps = 22/310 (7%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + I+ ++ G+R+D L +L+ V +S + R + +G + VN KP YKL GD + I Sbjct: 14 LIISPEDVGERLDTLLAHKLESVSRSQVQRAIEQGTILVNDHPSKPSYKLREGDRILILT 73 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG-LRA 129 + + E A+ P + ++YEDD I+V++KP+G VH G + L A Sbjct: 74 IPRVPQGEVALIPSY-----VDLRVVYEDDKIIVIDKPAGMVVHPSPGHYDNTLVNALIA 128 Query: 130 LRPE-----ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQW 184 P+ +VHRLD+DTSG+++VA+ L L Q++ + + K+Y L G Sbjct: 129 RYPDLLKQPTDRPGIVHRLDKDTSGLIIVARDLDTLNYLQGQMKARKIFKEYTLLCCGAL 188 Query: 185 QSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQI 244 ++AP+ +++ + V GK + T + + TL P+TGRTHQI Sbjct: 189 DPPEGRIEAPIGRDLRDRTKMSVIA--GGKEAVTEYSTIQSLGKYTLAIARPITGRTHQI 246 Query: 245 RVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPM 304 RVH GHPIA D YG+ + GLNR FLHA+ L P GE +P+ Sbjct: 247 RVHFAAIGHPIAGDPIYGNCRLE--------GLNRQFLHASRLGVVMP-NGEYKEWHSPL 297 Query: 305 DEGLKRCLQK 314 E L++ L+K Sbjct: 298 PEDLRQSLEK 307 >UniRef50_D0L1K7 Pseudouridine synthase n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1K7_HALNC Length = 346 Score = 355 bits (913), Expect = 1e-96, Method: Composition-based stats. Identities = 146/323 (45%), Positives = 197/323 (60%), Gaps = 10/323 (3%) Query: 3 TETPSVKIVAITADEAGQRIDNFLRTQLK----GVPKSMIYRILRKGEVRVNKKRIKPEY 58 + SV+ V + A AGQRIDNFL +L VP+S+IYRILR GEVRVN +R KP Sbjct: 14 EKKQSVRRVTVDAHYAGQRIDNFLLRELGATHGEVPRSLIYRILRTGEVRVNSQRAKPTT 73 Query: 59 KLEAGDEVRIPPVRVAER-EEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGS 117 +L GDEVRIPP+++ +E A +A AD+I+YED+ +L +NKP+G AVHGGS Sbjct: 74 RLATGDEVRIPPLKLQSPSQESAGVISANWLARAADMIVYEDEALLAVNKPAGLAVHGGS 133 Query: 118 GLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLR-EKGMQKDY 176 + FG+IE +R LEL HR+DRDTSG+L++AK R+ L SL Q R E +K Y Sbjct: 134 NIPFGLIELMRQHTGLGEKLELAHRIDRDTSGLLILAKTRATLHSLQTQFRPEGHAEKQY 193 Query: 177 LALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSP 236 LA+V G W +K V APL K + V+V+ +GK + T F V ATL+R Sbjct: 194 LAIVHGHWPDKLKRVDAPLEKWQGEGESHRVQVNPQGKEAVTHFAVLAANKNATLLRAQL 253 Query: 237 VTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNR----LFLHAAALKFTHP 292 TGRTHQIRVHT + HPI D++YG RE+D++L + R L LHA L THP Sbjct: 254 ETGRTHQIRVHTAHENHPIVGDEKYGQREWDKRLFPSTGASARRRPPLLLHAYRLMLTHP 313 Query: 293 GTGEVMRIEAPMDEGLKRCLQKL 315 T + +++ AP+ + + Q+L Sbjct: 314 QTEQPLQLTAPIPDKWRSLAQQL 336 >UniRef50_Q7UHX8 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UHX8_RHOBA Length = 334 Score = 355 bits (913), Expect = 1e-96, Method: Composition-based stats. Identities = 100/331 (30%), Positives = 148/331 (44%), Gaps = 35/331 (10%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 ++ + G RID FL G +S I ++ V+ + I+P YK++AG +VR Sbjct: 2 MREFVVPESANGFRIDLFLTQSCDGYSRSQIRDAVQNDGAEVDGRIIRPSYKVKAGQKVR 61 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 A + + ILYEDD ++V+NKP+G VH G G + Sbjct: 62 FRVPPPASDD--------TVPENIPLDILYEDDGLVVINKPAGMVVHPARGNWTGTLTSA 113 Query: 128 RALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 A R +VHRLDRDTSGV++VAK + +L Q ++ +QK+Y A+ Sbjct: 114 LAFRFQSLSDVGGPTRPGIVHRLDRDTSGVIVVAKNNAVHLNLAAQWHDRLVQKEYTAIT 173 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRV-SQEGKPSETRFKVEERYAFATLVRCSPVTG 239 G+ + A + ++ Q ++ +R K + T ++V ER+ T V P TG Sbjct: 174 FGRLDRDRDWIHASIGRHPYQRDKQAIREGHATSKTASTFYEVVERHGRVTRVDVRPKTG 233 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGD-------------------REFDRQLTEAGTGLNRL 280 RTHQIRVH + G PI D YG L+R Sbjct: 234 RTHQIRVHLAHIGCPILCDRLYGGHSELSRSQIRRLAGTEVATPGVKPTPEGEEILLSRQ 293 Query: 281 FLHAAALKFTHPGTGEVMRIEAPMDEGLKRC 311 LHA AL FT+P TG+ M + AP+ L+ Sbjct: 294 ALHAKALTFTNPQTGKEMTLTAPLPPDLQAV 324 >UniRef50_C8QZ10 Pseudouridine synthase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZ10_9DELT Length = 324 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 105/323 (32%), Positives = 152/323 (47%), Gaps = 29/323 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKG---VPKSMIYRILRKGEVRVNKK-----RIKPEYKLEA 62 + EAG+R+D L T+ G + +S + ++R+G VRV +KP L+A Sbjct: 11 FVVAPHEAGRRLDLVLATRAAGSAELTRSRLQSLIRQGRVRVESAGVEAGPLKPGMLLKA 70 Query: 63 GDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG 122 GD V + E A LYED+ ILVL KP G VH G G Sbjct: 71 GDRVDLQVPPPEATELVAEEVEFTP--------LYEDEDILVLVKPPGLVVHPADGHRQG 122 Query: 123 VIEGLRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKD 175 + +VHRLD+DTSG L+VAK A +L +Q + + ++K Sbjct: 123 TLVHGLLHHCRNLSGISGQLRPGIVHRLDKDTSGCLVVAKNDLAHHNLVQQFKGREVEKT 182 Query: 176 YLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY-AFATLVRC 234 Y AL+RG V P+ ++ + + VR + G+ + T ++V +R+ A TLV Sbjct: 183 YQALLRGILAEDTGQVVLPIGRHPVHRKKMAVR-REGGREAVTHWRVRQRFSAGYTLVEL 241 Query: 235 SPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGT 294 TGRTHQIRVH GHP+A D YG + G++R +LHA L F HP + Sbjct: 242 LLETGRTHQIRVHMAALGHPLAGDRLYGRNPE----KDMPYGIDRQWLHAWRLAFNHPRS 297 Query: 295 GEVMRIEAPMDEGLKRCLQKLRN 317 G + AP+ L+ L +LR Sbjct: 298 GRRLTFTAPLWVDLQASLDRLRE 320 >UniRef50_B9YI75 Pseudouridine synthase, RluA family n=1 Tax='Nostoc azollae' 0708 RepID=B9YI75_ANAAZ Length = 329 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 85/325 (26%), Positives = 154/325 (47%), Gaps = 23/325 (7%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYK-L 60 + ++ + + QR+D +L ++L+ + +S + +++ +G V +N + + + Sbjct: 15 SKIQNRMTVINLLVSQNTQRLDLYLSSELQNLSRSRLQQLIEQGHVLLNDQVCTSKKVNV 74 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 + GD + + E ++ P + ILYED+ +L+LNKP+G VH G Sbjct: 75 KVGDRICV--------EIPSLQPLKLVAEDIPLDILYEDEQLLILNKPAGLVVHPAPGHL 126 Query: 121 FGVIEGLRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQ 173 G + + +VHRLD+DT+G + +AK A + L QL+ K + Sbjct: 127 DGTLVNALLAHCANLPGIGGVQRPGIVHRLDKDTTGAIAIAKTDIAYQHLQAQLQAKTAR 186 Query: 174 KDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQ-EGKPSETRFKVEERYAFATLV 232 ++YL +V G ++ + P+ ++ + + ++ G+ + T +++ ER + TL+ Sbjct: 187 REYLGVVYGVPKTESGIINLPISRHPQDRKKMAIVPTEQGGRTAITHWQIRERLSNYTLI 246 Query: 233 RCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHP 292 TGRTHQIRVH+ GHPI D YG G L LHA LK HP Sbjct: 247 HFQLETGRTHQIRVHSAKIGHPIVGDSVYGAGR------SVGVNLAGHALHAWQLKLQHP 300 Query: 293 GTGEVMRIEAPMDEGLKRCLQKLRN 317 +G+ +++ A + L+ LR Sbjct: 301 ISGDWIQVTASPPQTFTTLLEVLRR 325 >UniRef50_A5IBH6 Pseudouridine synthase n=6 Tax=Legionella RepID=A5IBH6_LEGPC Length = 321 Score = 353 bits (906), Expect = 6e-96, Method: Composition-based stats. Identities = 89/316 (28%), Positives = 148/316 (46%), Gaps = 16/316 (5%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 + +++ + QR+D+ L L +S+I ++ G V +N KP+ K GD + I Sbjct: 7 QQLSVPRELHNQRVDSVLARLLPEYSRSLICNWIKTGAVTLNNLPCKPKDKALGGDLITI 66 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG-L 127 + +L K + I+YED ++V+NKP+G VH G+G + L Sbjct: 67 NVNHTIVNTDF----NLCKPENIPIQIIYEDSEVIVVNKPAGLVVHPGAGNKEHTLVNAL 122 Query: 128 RALRPEA---RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQW 184 PE ++HRLD+DT+G+L+VAK + SL Q++ + +++ YL LV G Sbjct: 123 LHHCPELQLLPRAGIIHRLDKDTTGLLIVAKNLISHTSLIRQMQNREIKRHYLTLVHGYV 182 Query: 185 QSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQI 244 S ++ ++ + V + G+ + T + + + Y TL+ S +TGRTHQI Sbjct: 183 ISG-GTIDTGFGRHPKNRLKMAV--TDFGRQAVTHYNINKHYKDFTLLNVSLMTGRTHQI 239 Query: 245 RVHTQYAGHPIAFDDRYGDR-----EFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RVH Y HP+ D YG R D + R LHA ++ F HP + Sbjct: 240 RVHMNYINHPVVGDQLYGGRMKFPPNADEAILSVLKQFKRQALHACSISFCHPVKNTEIT 299 Query: 300 IEAPMDEGLKRCLQKL 315 + A + + + L L Sbjct: 300 LNALLPDDFELLLNTL 315 >UniRef50_B6J6C4 Pseudouridine synthase n=7 Tax=Coxiella burnetii RepID=B6J6C4_COXB1 Length = 327 Score = 353 bits (906), Expect = 6e-96, Method: Composition-based stats. Identities = 88/316 (27%), Positives = 150/316 (47%), Gaps = 21/316 (6%) Query: 12 AITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNK-KRIKPEYKLEAGDEVRIPP 70 I + AG R+D L +S + +R G V+V+ ++ K K+ + I Sbjct: 15 IIPPELAGARLDQVLAKLFPDYSRSQLQNWIRGGHVKVDGIQKTKAREKVRENQFIEI-- 72 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 E + + ++YED+ +LV+NKP G VH G+G+ + Sbjct: 73 ------EAQLEPNERWVPQPIPLDVIYEDETLLVINKPVGLIVHPGAGVRDQTLINALLH 126 Query: 131 RPEA----RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 + ++HRLD+DTSG+LL+A+ ++ +L + ++ + + ++Y A+V+G S Sbjct: 127 YDPSLSVVPRAGIIHRLDKDTSGLLLIARTLASHHALIKAMKARQIVREYEAIVKGVLIS 186 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 +++AP+ ++ + V + G+P+ T F++ +RY T +R TGRTHQIRV Sbjct: 187 GR-TIEAPVGRHPIHRTRMAVV--EFGRPAITHFRIIKRYRAHTHIRVQLETGRTHQIRV 243 Query: 247 HTQYAGHPIAFDDRYGDR-----EFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 H + HP+A D YG L A L R LH A L+F+HP M Sbjct: 244 HMAHIHHPLAGDPVYGSHVGIPVHLSDPLQTALKTLKRQALHGATLQFSHPVDQRPMACH 303 Query: 302 APMDEGLKRCLQKLRN 317 AP+ + L+ L + Sbjct: 304 APLPADMAHLLECLED 319 >UniRef50_Q3JQ55 Pseudouridine synthase n=170 Tax=cellular organisms RepID=Q3JQ55_BURP1 Length = 477 Score = 353 bits (906), Expect = 7e-96, Method: Composition-based stats. Identities = 154/318 (48%), Positives = 195/318 (61%), Gaps = 6/318 (1%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 V ++ I AGQRIDNFL KGVPKS IYRILR GEVRVNK RI +Y+L GD Sbjct: 158 QVSLIEIDESAAGQRIDNFLLRVCKGVPKSHIYRILRSGEVRVNKGRIDAQYRLAFGDV- 216 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 P + A + V A IL+EDD I+VLNKP+G AVHGGSG++FGVIE Sbjct: 217 VRVPPVRVAAADLARAAGPAPVPAAEFEILFEDDAIIVLNKPAGVAVHGGSGVAFGVIEQ 276 Query: 127 LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 +R RP A+FLEL HRLDR+TSG+L++AKKRSAL LHEQ+RE M K Y A V G W + Sbjct: 277 MRHARPHAKFLELAHRLDRETSGILMLAKKRSALVGLHEQIRENRMDKRYFACVHGDWAA 336 Query: 187 HVK---SVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 V+APL K GER VRV ++G PS T F + +R+ LV TGRTHQ Sbjct: 337 DWGRRRVVKAPLFKYATPDGERRVRVQEDGLPSHTVFNLVDRWPDYALVEAELKTGRTHQ 396 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAG--TGLNRLFLHAAALKFTHPGTGEVMRIE 301 IRVH + G PI D +YGD ++ L A + R+FLHA L+ HP TGE ++ + Sbjct: 397 IRVHLAHLGLPIVGDAKYGDFALNKALARANAVPSIKRMFLHAHRLRLAHPLTGEPLQFD 456 Query: 302 APMDEGLKRCLQKLRNAR 319 AP+ ++ + +L + R Sbjct: 457 APLPAECRQFIDQLSDLR 474 >UniRef50_D0J9U5 Pseudouridine synthase n=2 Tax=Blattabacterium RepID=D0J9U5_BLASP Length = 344 Score = 353 bits (906), Expect = 7e-96, Method: Composition-based stats. Identities = 101/326 (30%), Positives = 155/326 (47%), Gaps = 24/326 (7%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR-- 67 + + RID FLR ++ + ++ I + G++ VN+ IK YK++ D V Sbjct: 7 KFFVEKYQKTIRIDKFLRKSIQNISRNQIQKATNSGKILVNQCIIKKNYKIKPFDLVEAE 66 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 I + + E + + + ILYED+ ILV+NK +G VH G G G + Sbjct: 67 IYYPPILDSEYKNI-----IAENIPLNILYEDEDILVINKAAGMVVHPGFGNEKGTLIHG 121 Query: 128 RALRPEA----RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 + L LVHR+D+DT+G+L++AK A + L +Q K +Q+ YLALV G Sbjct: 122 IKYHFKNNHQLYRLGLVHRIDKDTTGLLVLAKNEYAQKYLFQQFISKTIQRKYLALVWGN 181 Query: 184 WQSHVKSVQAPLLKNILQSGERIV--RVSQEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 Q ++ + ++ + R + S T +KV ER+ + T V C+ TG+T Sbjct: 182 IQKQEGTISGFIGRDPNNRKRMTLFQRNFYRSRYSVTHYKVLERFKYLTYVSCNLETGKT 241 Query: 242 HQIRVHTQYAGHPIAFDDRYGD----------REFDRQLTEAGTGLNRLFLHAAALKFTH 291 HQIRVH +Y GHP+ D YG ++ ++ L R LHA +L F H Sbjct: 242 HQIRVHFKYLGHPLFNDSTYGGDKIFMKKYLSKKSIDFFKDSLNLLKRQALHAGSLSFIH 301 Query: 292 PGTGEVMRIEAPMDEGLKRCLQKLRN 317 P + E K+ LQKLRN Sbjct: 302 PK-NRKCHFTCSIPEDFKKVLQKLRN 326 >UniRef50_A8GQ59 Pseudouridine synthase n=15 Tax=Rickettsia RepID=A8GQ59_RICAH Length = 329 Score = 352 bits (905), Expect = 9e-96, Method: Composition-based stats. Identities = 78/322 (24%), Positives = 140/322 (43%), Gaps = 24/322 (7%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEV 66 + + + R+D L L+ + ++ I + ++ +V VN I P+ ++ D + Sbjct: 1 MLTYNVPNELNNIRLDKALSQLLEKISRNQIQKAIKNSQVLVNDVIISDPDVLVKENDVI 60 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 E + AV +A I+YEDD ++V+NK +G VH G+G + Sbjct: 61 LFAFKEPEELKIAAV--------NIALDIIYEDDDLIVINKAAGMTVHPGAGHHDDTLVN 112 Query: 127 LRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 A +VHRLD+DT+G+++VAK A L Q+ ++ + + Y AL Sbjct: 113 ALLYHTKNLSDIGSAARPGIVHRLDKDTTGLMVVAKNNKAHMLLANQIEQRQVIRKYKAL 172 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEE--RYAFATLVRCSPV 237 V G ++ + ++ ++ + + + GK + T +K E ++V C Sbjct: 173 VWGVINPLAGVIKNNIGRSRVERQKMSI-LKYGGKEAVTHYKTLELFYGGTISMVECRLN 231 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFD-----RQLTEAGTGLNRLFLHAAALKFTHP 292 TGRTHQIRV + H + D YG+ + L R LH+ L FTHP Sbjct: 232 TGRTHQIRVQLSHVKHSVVGDQTYGNNDRKIAHSSPALKAKLIDFKRQALHSWYLSFTHP 291 Query: 293 GTGEVMRIEAPMDEGLKRCLQK 314 + ++M + ++ + Sbjct: 292 TSNKIMEFSCELPRDMEAIIAT 313 >UniRef50_Q6MEC0 Pseudouridine synthase n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MEC0_PARUW Length = 318 Score = 352 bits (904), Expect = 1e-95, Method: Composition-based stats. Identities = 92/324 (28%), Positives = 144/324 (44%), Gaps = 26/324 (8%) Query: 1 MKTE-TPSVKIVAITADEAGQRIDNFLRTQLKG-VPKSMIYRILRKGEVRVNKKRIKPEY 58 M V ++ I+ DE G+R+D L + ++ ++ K + VN +K Sbjct: 1 MANSYGEEVDLLIISEDEVGERLDKVLARRFNAKYSRTYFQFLIDKHLILVNGIAVKKRT 60 Query: 59 KLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG 118 L+ GDEV + + E + ILYED+H+LV+NKP+G VH G Sbjct: 61 LLQEGDEVEVQFLASPESNLM--------PENIPLSILYEDEHLLVINKPAGMVVHPAPG 112 Query: 119 LSFGVIEGLRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG 171 G P+ +VHRLD+ TSG+L+ AK + L E + Sbjct: 113 NWSGTFVNALLYYCQKLPLLPDTIRPGIVHRLDKGTSGLLVAAKTLETQQKLIELFASRK 172 Query: 172 MQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATL 231 + K YLA+ G+ +QAP+ ++ + + V GKP+ + K + Sbjct: 173 VYKAYLAICIGRPAD--GEIQAPIGRHPIHRKQMAVI--PTGKPAISFCKTLGWSDKLSF 228 Query: 232 VRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTH 291 V+ TGRTHQIRVH +Y G PI D YG ++ + + LHAA L+F H Sbjct: 229 VQIEIATGRTHQIRVHMKYRGSPILGDPLYGQISLNQYYS-----VPHQLLHAAVLRFQH 283 Query: 292 PGTGEVMRIEAPMDEGLKRCLQKL 315 P + E + P + R ++K+ Sbjct: 284 PISLENLEFCTPPPPEMVRLIKKI 307 >UniRef50_Q0BWH2 Pseudouridine synthase n=3 Tax=Alphaproteobacteria RepID=Q0BWH2_HYPNA Length = 341 Score = 351 bits (903), Expect = 1e-95, Method: Composition-based stats. Identities = 94/345 (27%), Positives = 150/345 (43%), Gaps = 43/345 (12%) Query: 8 VKIVAITAD--EAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKR-IKPEYKLEAGD 64 + + IT++ +AGQR+D FL + +G+ +S ++ +G V V P ++ G Sbjct: 1 MNQIVITSEAADAGQRLDAFLGARAEGISRSRAKTLIEEGAVTVGGAVETNPRAPVKKG- 59 Query: 65 EVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI 124 V P + + A+ IL+ED H+++LNK +G AVH G G + Sbjct: 60 -------LVYAVNMPPPVPAMPEAEAIPLEILFEDAHLVILNKAAGMAVHPAPGSQTGTL 112 Query: 125 EGLRALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDY 176 +VHRLD+ TSGV++ AK SA L + + Y Sbjct: 113 VNALLHHCQGQLSGIGGVERPGIVHRLDKLTSGVMVAAKTESAHTGLAALFERHDIDRVY 172 Query: 177 LALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQE---GKPSETRFKVEERYA------ 227 A+ RG + +++A + ++ + V + + + + T +K E + Sbjct: 173 RAVTRGAPRPLSGTIEAAIARSESDRKKMSVHRNPDSPAARHAVTHYKAVETFGYKDRAT 232 Query: 228 ---FATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDR------------EFDRQLTE 272 A L+ C TGRTHQIRVH ++G P+ D YG + + Sbjct: 233 RLPAAALLECRLETGRTHQIRVHMAHSGAPLIGDPVYGRQAGIMAWKAPGSEARYDKALA 292 Query: 273 AGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 A +R LHAA L F HP TGE +R EAP+ E + + LR Sbjct: 293 AARAFSRQALHAAVLGFVHPITGETLRYEAPLPEDMTGLIAALRK 337 >UniRef50_B6BTN1 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=B6BTN1_9PROT Length = 346 Score = 351 bits (903), Expect = 2e-95, Method: Composition-based stats. Identities = 101/326 (30%), Positives = 156/326 (47%), Gaps = 20/326 (6%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 T T K + I A G R+D L + +S I +++ + +N + YK+ Sbjct: 1 MTNTDFNKKLIIPATFFGSRLDAVLSNLVPEFSRSKIQSMIKNDLIFLNGSHVSQNYKVV 60 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 G+E+ I V E + ++ I+YEDD ILVLNKP VH GSG + Sbjct: 61 GGEEIVINGVIEDEID--------VIAENISLDIVYEDDDILVLNKPYNLVVHPGSGNAN 112 Query: 122 GVIEGLRALRPEA----RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 G + + +VHRLD+DT+G+++VAK + +L QL+ K + ++Y Sbjct: 113 GTLLNGLLYYNKDLEKLPRGGIVHRLDKDTTGLMVVAKNEESQNNLISQLQSKSVYREYR 172 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPV 237 A+V GQ + +Q P+ ++ Q + V GK +ET+ ++ ER+ + T VRC Sbjct: 173 AIVWGQIWQNK-VIQKPIGRHPRQRTKMAVTKV-NGKDAETKLEILERFNYHTYVRCLLK 230 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYG------DREFDRQLTEAGTGLNRLFLHAAALKFTH 291 TGRTHQIRVH PI D YG + + L ++ +R LHA AL H Sbjct: 231 TGRTHQIRVHMLDNNSPIVGDKDYGLKKIIPTKNMEMDLLKSIKNFDRQALHAIALGLIH 290 Query: 292 PGTGEVMRIEAPMDEGLKRCLQKLRN 317 P T + M+ + E +K L +R Sbjct: 291 PKTNKEMKWTIDLPEDMKELLSVIRK 316 >UniRef50_C0ZH07 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZH07_BREBN Length = 306 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 88/309 (28%), Positives = 139/309 (44%), Gaps = 24/309 (7%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + +AGQ + L+ + GV + ++ R KG + N + KL+AGD++ Sbjct: 8 FTVDEADAGQTVREVLQKRY-GVSRRLLIRAKFKGSITRNGVLVFVNEKLQAGDKI---- 62 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG---- 126 E + + I YED+ ++V+ KP+G VH G + Sbjct: 63 ----AVMVEEEAEETVAPEDMPLSIRYEDEDLMVIAKPAGLVVHPTGNHPSGTLANGMIA 118 Query: 127 LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 R E R V+RLD+DTSG+++VAK + A + + +Q+ Y A+V+G +S Sbjct: 119 YWKKRGENRKFRAVNRLDKDTSGLMIVAKNQWAHEQFSRMQQIRTLQRTYRAIVQGIVES 178 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 ++ P+ R VR +G+ + T ++V R + V TGRTHQIRV Sbjct: 179 DDGTINTPIGLAENSFITRQVR--PDGQTAVTHYRVLARGEGMSFVEVKLETGRTHQIRV 236 Query: 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDE 306 H GHP+A DD YG + R LHA L F HP +G M E P+ Sbjct: 237 HMSSEGHPLAGDDLYGGEREH---------IGRQALHAWGLSFVHPRSGLAMSWEEPLPN 287 Query: 307 GLKRCLQKL 315 +++ Q+ Sbjct: 288 DMEQLAQQF 296 >UniRef50_Q0VQN9 Pseudouridine synthase n=2 Tax=Alcanivorax RepID=Q0VQN9_ALCBS Length = 317 Score = 351 bits (901), Expect = 2e-95, Method: Composition-based stats. Identities = 151/320 (47%), Positives = 203/320 (63%), Gaps = 8/320 (2%) Query: 1 MKTETP---SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPE 57 M +TP V V I GQR+DNFL T LKGVPKS +YRI+R GEVRVNK R K Sbjct: 1 MSEDTPAANRVTFVTIDEGRHGQRLDNFLFTHLKGVPKSRVYRIIRSGEVRVNKGRAKQT 60 Query: 58 YKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGS 117 +L GD VR+PP+R ++ + L +YEDD + V NKP+G AVHGGS Sbjct: 61 TRLCTGDVVRVPPIRTSDST-APAAVSEGLAERLRRACVYEDDQLFVFNKPAGLAVHGGS 119 Query: 118 GLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 G+S G+IE LR + P+ R LELVHRLDRDTSG+++VA++RS LR L ++ ++K Y Sbjct: 120 GVSLGLIEALRVMFPQERELELVHRLDRDTSGLIMVARRRSFLRKLQRLMQGGQIEKRYW 179 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPV 237 L +G ++ +++ APLLK ++ ERIVRVS+EGKPS T F++ ER+A A LV + Sbjct: 180 LLCQG-FKGKERTLDAPLLK-MMNGNERIVRVSREGKPSVTHFRLLERFAQAQLVEATLE 237 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQIRVH+Q+ G + D +YG + + L E G RL LHA L F HP TG+ Sbjct: 238 TGRTHQIRVHSQFGGFALLGDSKYGIAKGEALLAE--IGRRRLCLHARTLVFVHPNTGKR 295 Query: 298 MRIEAPMDEGLKRCLQKLRN 317 + + AP+D+ + L LR+ Sbjct: 296 LTVTAPLDDDYEAILTALRS 315 >UniRef50_D1VS73 Pseudouridine synthase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VS73_9FIRM Length = 295 Score = 350 bits (900), Expect = 3e-95, Method: Composition-based stats. Identities = 84/316 (26%), Positives = 151/316 (47%), Gaps = 28/316 (8%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 + + + GQR+D +L L + +S I ++ +V VNKK +K YKL D + Sbjct: 1 MDNFKVDKENFGQRLDVYLAK-LVDLSRSQIKNLIDNEKVLVNKKNVKAGYKLSEDDVIS 59 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 + + + ++YED++I V++KP VH G+G S G + Sbjct: 60 LEYP----------KDNKPFAEKIDFNVIYEDEYIAVISKPQDLVVHIGAGNSSGTLVNG 109 Query: 128 RALRPEAR-------FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 + + + +VHRLD++TSG++++AK A +L +Q + ++K YLA+V Sbjct: 110 LLYKFKNQLSDLDPLRPGIVHRLDKNTSGLMIIAKNNQAHINLVDQFKNSQIKKYYLAIV 169 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 G+ + P+ +N + V V + K + T++K + + +L+ + +TGR Sbjct: 170 HGK-TPESGIIAEPIGRNPNDRKKMAV-VYKNSKQAITKYKKLKEFQEYSLLNINLLTGR 227 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH Y G+P+ D YG + + +++ LH+ L F HP T + M Sbjct: 228 THQIRVHMAYIGYPVLGDIIYGRKNSLK--------IDKQMLHSYKLIFNHPITNQKMEF 279 Query: 301 EAPMDEGLKRCLQKLR 316 K+ + K++ Sbjct: 280 TDEFPIRFKKFIDKIK 295 >UniRef50_Q03WF6 Pseudouridine synthase n=9 Tax=Firmicutes RepID=Q03WF6_LEUMM Length = 312 Score = 350 bits (899), Expect = 4e-95, Method: Composition-based stats. Identities = 104/313 (33%), Positives = 157/313 (50%), Gaps = 22/313 (7%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 KI+ D+AG R+D L + ++ + L G + VN ++K YK+ +GD + I Sbjct: 4 KILIHITDQAG-RVDAVLSKENLSYSRTTLSNWLVDGTILVNNHKVKRSYKVVSGDTISI 62 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 P E + EA + L + D+ +V+NKP G VH +G S G + Sbjct: 63 TPPETQETKIEAENIPLDIIYEDDDI--------IVVNKPQGMVVHPAAGHSSGTLVNAL 114 Query: 129 ALR------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 +VHR+DRDTSG+L+VAK A RSL EQL+ Q+ Y ALVRG Sbjct: 115 LHHSPLSTINGEFRPGIVHRIDRDTSGLLMVAKNDKAHRSLSEQLKSHKNQRVYYALVRG 174 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 ++ +++AP+ ++ + ++ V + G+ + T F+V +RY TL++ S TGRTH Sbjct: 175 EFTEDSGTIEAPIGRHKIDRKKQAVI--EGGREAVTHFRVLKRYVGYTLLKVSLETGRTH 232 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH Y GHP+ D YG GT LN LHA L P TG+ + ++ Sbjct: 233 QIRVHMSYIGHPVVGDPVYG-----TAQKLDGTQLNGQLLHAKTLTLEQPTTGDELSFDS 287 Query: 303 PMDEGLKRCLQKL 315 P+ + + L L Sbjct: 288 PLPDYFQFALSTL 300 >UniRef50_C6J6E3 Pseudouridine synthase n=2 Tax=Bacillales RepID=C6J6E3_9BACL Length = 321 Score = 350 bits (899), Expect = 4e-95, Method: Composition-based stats. Identities = 93/330 (28%), Positives = 149/330 (45%), Gaps = 23/330 (6%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRI-LRKGEVRVNKKRIKPEYK 59 M +E + A E G + + L+ ++ G+ + ++ RI L + V +N +R+ Sbjct: 1 MSSEYYDPIEYQVPAAEDGWTVKSVLQRRM-GISRKLLSRIKLTERGVMLNGERVYISVP 59 Query: 60 LEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGL 119 ++AGD V + + + + I+YED+ +L++NK +G VH G Sbjct: 60 VKAGDTVSVSLEKETSTDI--------LPEPIPFDIVYEDEALLIVNKAAGLIVHPTHGH 111 Query: 120 SFGVIEG----LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKD 175 G + + E VHRLD++TSG++ +AK + + EQL + K Sbjct: 112 YTGTLANGVVYYWQEKGEKFRFRPVHRLDQETSGLIAIAKNAYVHQHISEQLIAGEVTKK 171 Query: 176 YLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCS 235 Y ALV G ++ P+ ++ + RIV + G PS T +KV E Y V Sbjct: 172 YTALVHGCPAVPEGTIDGPIDRDPAEPHRRIV--TPSGYPSLTYYKVAEAYGDGARVELR 229 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRYG-------DREFDRQLTEAGTGLNRLFLHAAALK 288 TGRTHQIRVH GHP+ D YG ++ + R LHA+ L Sbjct: 230 LGTGRTHQIRVHMTSIGHPLIGDKFYGMPGLAELPAPARERIARLDAAIGRQALHASELG 289 Query: 289 FTHPGTGEVMRIEAPMDEGLKRCLQKLRNA 318 F HP TGE + ++ + E + + LR A Sbjct: 290 FRHPLTGEALTFKSELPEDMLKLEAMLRRA 319 >UniRef50_B0VJ94 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJ94_9BACT Length = 351 Score = 350 bits (899), Expect = 5e-95, Method: Composition-based stats. Identities = 86/335 (25%), Positives = 146/335 (43%), Gaps = 35/335 (10%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLR--TQLKGVPKSMIYRILRKGEVRVNKKRIKPEY 58 MK + + + + QR+D FL + ++ I ++ + + VN +K Y Sbjct: 8 MKDKLKVIYTL-----QEMQRLDKFLAELKIQELYSRTFIEHLIEEDRILVNLTPVKKSY 62 Query: 59 KLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG 118 L+ GDEV I P + ++YED+++ ++NK +G VH G G Sbjct: 63 LLKEGDEVIINLPEPE--------PMNVLPQDIPLDVVYEDEYLAIINKKAGMIVHPGFG 114 Query: 119 LSFGVIEGLRALRPEAR--------FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREK 170 G + R +VHRLDR TSG++++AK L + + Sbjct: 115 NPEGTLVNAILYRFGENLSSGKEFNRPGIVHRLDRGTSGLIIIAKNDLTHAKLSDMFARR 174 Query: 171 GMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFAT 230 ++K Y A+ G + ++ L ++ R + V+ EG+ + T +K + + + Sbjct: 175 EIKKTYFAITTGIPEPEKGEIETYLARSNKNP--RTICVTNEGRYALTHYKTIKTWHYFA 232 Query: 231 LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTG----------LNRL 280 LV +P TGR HQIRVH + +PI D Y R + + L L R Sbjct: 233 LVEINPATGRMHQIRVHFAHIRYPILGDLLYNSRRYVQSLVPQNMKKKVTELLVNHLRRQ 292 Query: 281 FLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 LH+ L+F HP TG + + AP+ + ++ L L Sbjct: 293 ALHSWKLEFFHPITGYPISVSAPIPDDIQYTLNWL 327 >UniRef50_Q126H9 Pseudouridine synthase n=1 Tax=Polaromonas sp. JS666 RepID=Q126H9_POLSJ Length = 378 Score = 350 bits (898), Expect = 6e-95, Method: Composition-based stats. Identities = 150/334 (44%), Positives = 205/334 (61%), Gaps = 32/334 (9%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 V + D AGQR+DNFL LKGVPK+ +YRI+R GEVR+NK R + + +LEAGD VR+PP Sbjct: 31 VTVDEDYAGQRLDNFLIRHLKGVPKTHVYRIIRSGEVRINKGRAQADTRLEAGDIVRLPP 90 Query: 71 VRVAEREEEAVSPHLQKVAA-------------LADVILYEDDHILVLNKPSGTAVHGGS 117 VR +ER ++ ++VA +L+EDD +L ++KP+G AVHGGS Sbjct: 91 VRTSERADQKAQAMAEEVARHGASSTVGGYAPSREFPVLFEDDFLLAIDKPAGVAVHGGS 150 Query: 118 GLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 G+SFGVIE LR RP+A FLELVHRLDR+TSG+LL+AK+R AL+ L EQ RE+ K YL Sbjct: 151 GVSFGVIEQLRMARPQADFLELVHRLDRETSGILLIAKRRMALKLLQEQFRERETDKVYL 210 Query: 178 ALVRGQWQSHVKSVQAPLLK--------NILQSGERIVRVSQEGKPSETRFKVEERYAF- 228 ALV G W ++ + + L K + + + +G S T KV+ +A Sbjct: 211 ALVSGNWPANHRVIDKALHKYLLPGGAGEGERRVKVVPNDHPDGMRSVTLVKVKSAFAAL 270 Query: 229 -------ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTG---LN 278 TL+ + TGRTHQIRVH GHPIA DD+YGD E ++ L ++ G L Sbjct: 271 PAAPGTPFTLLEVTIKTGRTHQIRVHLANEGHPIAGDDKYGDFELNKSLQKSVAGGAPLK 330 Query: 279 RLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCL 312 R+FLHA +LKF HP T + + +E P+ + L++ L Sbjct: 331 RMFLHAWSLKFNHPKTRKTIHLETPLPDELQQFL 364 >UniRef50_C5VRN0 Pseudouridine synthase n=1 Tax=Clostridium botulinum D str. 1873 RepID=C5VRN0_CLOBO Length = 302 Score = 349 bits (897), Expect = 7e-95, Method: Composition-based stats. Identities = 90/321 (28%), Positives = 152/321 (47%), Gaps = 23/321 (7%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 ++ + + + R++++L ++ I + R+G ++VN + Y L Sbjct: 1 MESKDNIIKLKVEIETEEIRLNHYL-KEVAQCSSRFIRKAAREGRIKVNGNNARLSYMLT 59 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 D V + R E++ + I+YED+ I+V+NKP G VH Sbjct: 60 NNDIVELQINRKEEQDII--------PEKMDLDIIYEDNDIIVVNKPKGIVVHPTKRHLN 111 Query: 122 GVIEGLRALRPEARF----LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 G + + + LV+RLD DTSG++L+AK + +L +++ K YL Sbjct: 112 GTLSNGVLYYFNDKNENSIVRLVNRLDMDTSGLVLIAKNAYSHMALSRDMQKDDFVKKYL 171 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPV 237 A+V G + + P+ + + +RI + + G+ S T FKV E+Y A+LV + Sbjct: 172 AIVHGNFNEDSGVIDKPIYRVGEGTLKRI--IDERGQRSITLFKVIEQYKNASLVELTLE 229 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQIRVH GHPI D YG E ++R LHA L+ HP G++ Sbjct: 230 TGRTHQIRVHLSSIGHPIYGDSLYG--------EEEPQYIDRQALHAYKLQIPHPKDGKI 281 Query: 298 MRIEAPMDEGLKRCLQKLRNA 318 +++E+ + E +K ++KL Sbjct: 282 LKLESSLPEDMKNLIRKLSEE 302 >UniRef50_Q89AH2 Ribosomal large subunit pseudouridine synthase C n=5 Tax=Buchnera aphidicola RepID=RLUC_BUCBP Length = 315 Score = 349 bits (897), Expect = 7e-95, Method: Composition-based stats. Identities = 145/315 (46%), Positives = 208/315 (66%), Gaps = 1/315 (0%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 M + S + IT + QRIDNFLR K +P ++I +I+R G++R+NKKRI YKL Sbjct: 1 MTNQFSSTHFLNITENSEKQRIDNFLRKTFKRLPFNLICKIIRTGQIRINKKRINQNYKL 60 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 + GD VRIPP+ + + + + + ++ILYED++ L+LNKPSG +VH GSG++ Sbjct: 61 KLGDSVRIPPITIQSDSNKKIKLNTRLSIIFNNMILYEDNYFLILNKPSGMSVHSGSGIN 120 Query: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 +G+IE LR LRP R+L+LVHRLDRDTSGVL++AKKRS LR+LHEQLREK ++K Y+ALV Sbjct: 121 YGMIENLRILRPYNRYLDLVHRLDRDTSGVLIIAKKRSILRNLHEQLREKKIKKKYVALV 180 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 G W +KS+ PLLK + + IV++ +GK S T F ++++Y TL+ +P+TGR Sbjct: 181 HGVWPDILKSISKPLLKTSSRKNKNIVKIDPKGKESITHFNIKKKYTKNTLISITPITGR 240 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH + +PI D +YG ++ D + +NRL LHA ++ F HP + + I Sbjct: 241 THQIRVHLLHLNYPIVLDAKYGIKKLD-YFIKNKFNINRLLLHAESINFFHPKRKKNILI 299 Query: 301 EAPMDEGLKRCLQKL 315 AP+D K L+ L Sbjct: 300 TAPLDYVFKTVLKNL 314 >UniRef50_D0RPR1 Pseudouridine synthase n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RPR1_9RICK Length = 325 Score = 349 bits (896), Expect = 8e-95, Method: Composition-based stats. Identities = 83/328 (25%), Positives = 148/328 (45%), Gaps = 28/328 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRIP 69 + + +RID + Q + +S + +I++ +++N + +K P +K+++GD++ Sbjct: 6 FVVDENFDQKRIDQVVAKQYPKISRSKVSKIIKTELLKLNGQILKDPSHKVKSGDQIEFE 65 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 + + I++ED I++++KP G VH G+G + Sbjct: 66 NLIEETIN--------LIPKKMDLNIIFEDQDIIIIDKPIGMVVHPGAGNYEDTMVNGLL 117 Query: 130 LR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 +VHR+D+DTSG+L+VAK A + +Q E +++ YL V Sbjct: 118 YHCKNNLSGMNGEDRPGIVHRIDKDTSGLLVVAKNDQAHAFIAKQFEEHSIKRSYLVFVY 177 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA-----FATLVRCSP 236 G + ++ + +N + V + GK + T ++ E + +LV+C Sbjct: 178 GILRPLHGKIETLIGRNKTNRQKMSADVIR-GKDAITNYETLEVFKGNKIPDISLVKCIL 236 Query: 237 VTGRTHQIRVHTQYAGHPIAFDDRYGD-----REFDRQLTEAGTGLNRLFLHAAALKFTH 291 TGRTHQIRVH + G+PI D YG R D++ E L R LHA L F H Sbjct: 237 ETGRTHQIRVHMSHKGNPILGDQTYGKKIKKIRGIDQEFEEILKSLKRQALHAHTLGFIH 296 Query: 292 PGTGEVMRIEAPMDEGLKRCLQKLRNAR 319 P T E + + + + L + +L + Sbjct: 297 PTTNEEVFFASELPDDLNKLKNRLETLK 324 >UniRef50_Q1Q689 Similar to ribosomal large subunit pseudouridine synthase D n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q689_9BACT Length = 335 Score = 348 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 91/336 (27%), Positives = 155/336 (46%), Gaps = 26/336 (7%) Query: 1 MKTETPSVKIVAITADEAG--QRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEY 58 ++ VK V + G +RID F+ ++ + ++ I +++++G + VN +K Y Sbjct: 5 LQESQAHVKEVTLEIKRVGESKRIDRFISSRFPDLSRTYIQKLVKEGAIVVNGNVVKSSY 64 Query: 59 KLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG 118 ++ GD + E + + I+YEDD+++++NKP VH G Sbjct: 65 FIKKGDVISATVPVPEETKIT--------PEDIPLNIIYEDDYLMLINKPYDMVVHPAGG 116 Query: 119 LSFGVIEGLRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG 171 G + +VHRLDRDTSGV+LV K + + Q ++ Sbjct: 117 HPSGTLVNAVTFYCQNLSQINGPLKAGIVHRLDRDTSGVMLVIKSDAVHSHIAMQFEKRL 176 Query: 172 MQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATL 231 ++K+Y A+V G+ + P+ ++ + + VR GK + + ++V ER+ TL Sbjct: 177 VKKEYFAVVEGEVAFDSNEINMPIGRHRVDRQKMAVR-RDTGKNATSVYEVIERFRGYTL 235 Query: 232 VRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREF--------DRQLTEAGTGLNRLFLH 283 V+ P TGRTHQIRVH Q GHP+ D+ Y + + G+ + R LH Sbjct: 236 VKIMPKTGRTHQIRVHMQAIGHPVVADEMYSKYNACFRSDLLGKERAPDEGSIIERQALH 295 Query: 284 AAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNAR 319 A ++F HP + M + M E + + LR R Sbjct: 296 AHRIEFFHPILNKQMAFQVDMAEDISFLVSALRELR 331 >UniRef50_C5S931 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=C5S931_CHRVI Length = 346 Score = 348 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 166/314 (52%), Positives = 213/314 (67%), Gaps = 9/314 (2%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 + V + GQRIDNFL LKGVP+S +YR+LR+GEVRVNK R+K EY+L AGD VRI Sbjct: 37 QYVQVDTQADGQRIDNFLLRILKGVPRSHLYRLLRRGEVRVNKGRVKAEYRLCAGDVVRI 96 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 PP+R+ E A +P ++A L I++ED+ +LV++KPSG AVHGGSGLS+G+IE LR Sbjct: 97 PPIRLGESAPPARAPE-AQLARLEGAIIHEDERLLVIDKPSGLAVHGGSGLSYGLIESLR 155 Query: 129 ALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHV 188 LRP R LELVHRLDRDTSG L+V K+RSALR LH +RE G+ K YLAL+ G+ Sbjct: 156 QLRPG-RELELVHRLDRDTSGCLVVCKRRSALRELHALIREGGLDKRYLALILGELPRAE 214 Query: 189 KSVQAPLLKNILQSGERIVRVS-QEGKPSETRFKVEERY----AFATLVRCSPVTGRTHQ 243 V APL KN+L SGER+VRV Q GK + TRF+ +R+ TLV +TGRTHQ Sbjct: 215 LLVDAPLKKNVLSSGERLVRVDAQGGKEARTRFRRLKRFAIDGQALTLVEAELITGRTHQ 274 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH + G P+A DD+YGD +++L G GL RLFLHA+AL F +R+E P Sbjct: 275 IRVHAAHLGTPLAGDDKYGDEAANQRLK--GYGLKRLFLHASALSFKLECMARPLRLECP 332 Query: 304 MDEGLKRCLQKLRN 317 + + L++ L L N Sbjct: 333 LPDELQQVLDALEN 346 >UniRef50_A1AW00 Pseudouridine synthase n=2 Tax=sulfur-oxidizing symbionts RepID=A1AW00_RUTMC Length = 314 Score = 347 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 91/318 (28%), Positives = 151/318 (47%), Gaps = 20/318 (6%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 S+ V I GQRID + L + I ++ G+ ++ K KP+ K+ G+ + Sbjct: 2 SLLSVIIPNRFIGQRIDAAMAQMLPNYSRVKITYWIKSGDALIHHKTFKPKEKVLGGEVI 61 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 + A + ++YED+ I+++NKP H G G + Sbjct: 62 TLSIKIEKTNAWLA--------QDIVIDVVYEDEAIIIVNKPVNLVTHPGVSNWTGTLAN 113 Query: 127 LRALRPEA----RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 + +VHRLD++TSG+++VA+ A + L QL+ + ++Y A+V G Sbjct: 114 ALLHYDSSLANLDRAGIVHRLDKNTSGLMVVARSEYAQKYLTRQLQTHSISREYSAIVYG 173 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 S +V P+ ++ + V ++ GK + T ++V ER+A T V+ TGRTH Sbjct: 174 HMISG-GTVDKPIGRDPKDRIRQTV--TESGKDALTHYRVIERFAHHTHVKVMLETGRTH 230 Query: 243 QIRVHTQYAGHPIAFDDRYGD-----REFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 QIRVH + GHP+ D YG ++ D+QL + NR LHA L HP + E+ Sbjct: 231 QIRVHLSFIGHPLIADPMYGGKIRFPKKADKQLKNSLKNFNRQTLHAKKLTLIHPTSTEL 290 Query: 298 MRIEAPMDEGLKRCLQKL 315 M + P+ + ++ LQ L Sbjct: 291 MSWKVPLPQDMQDLLQVL 308 >UniRef50_B5YKV0 Pseudouridine synthase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKV0_THEYD Length = 315 Score = 347 bits (891), Expect = 4e-94, Method: Composition-based stats. Identities = 81/314 (25%), Positives = 153/314 (48%), Gaps = 15/314 (4%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + + G+R+D F+ +L + ++ + K V+VN YK++ D + + Sbjct: 5 LQTEKADEGKRLDIFISDKL-NISRAKAQEAIEKKFVKVNNYVKTKSYKIKFNDLIEVSD 63 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 + E + ++Y+DD+++VL+KP+G V+ +G G + A Sbjct: 64 EFSLKLENS----EKLIPQNIPIQVIYKDDYLIVLSKPAGMVVYPCAGHPDGTLMNALAY 119 Query: 131 R-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 +VHRLD+DTSGV++VA L E +++ ++K+YLALV GQ Sbjct: 120 HVKKLANVGAPFRPGIVHRLDKDTSGVMVVALDDETYYKLVEAFKKREIKKEYLALVYGQ 179 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 + + P+ + I + ++ S++ K + T ++V + + T ++ +TGRTHQ Sbjct: 180 LR-GSGKITTPVGRAIYDRKKMSIK-SKKAKEAITEWEVIKNFKNYTFLKVKILTGRTHQ 237 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH GHP+ D YG + + + ++R LHA ++ HP T ++++ EA Sbjct: 238 IRVHFSSIGHPVIGDKTYGRKTYIEIGNKKI-PVSRQMLHAHKIELIHPITEKLLQFEAS 296 Query: 304 MDEGLKRCLQKLRN 317 + + ++ L L + Sbjct: 297 LPDDIQYILNILED 310 >UniRef50_Q312A0 Pseudouridine synthase, RluD n=6 Tax=Bacteria RepID=Q312A0_DESDG Length = 578 Score = 346 bits (890), Expect = 5e-94, Method: Composition-based stats. Identities = 89/321 (27%), Positives = 138/321 (42%), Gaps = 29/321 (9%) Query: 13 ITADEAGQRIDNFLRTQLKG--VPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRIP 69 ++ AG+R D F+ L G + + I R + G++ ++ P+ KL++G + Sbjct: 45 VSPQAAGERADRFIAAALAGDAISRGKIQRAISDGQLLIDNTVCTSPKTKLKSGQHIVF- 103 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLR 128 +LY D H+LV+NKP+G VH G + L Sbjct: 104 --------SMEAPAACVSPEEGELEVLYRDAHMLVINKPAGLTVHPAPSCPEGTLVHRLL 155 Query: 129 ALRPE-----ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 PE +VHR+D+DTSG+LL+A A +L + + + K+YLALV+G Sbjct: 156 HHFPELEAQEGFRPGIVHRIDKDTSGLLLIALTEKARLALSDAFAGRRIHKEYLALVKGI 215 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA------FATLVRCSPV 237 + + AP+ ++ V + G+ + + ++V TLV Sbjct: 216 PEGDSGEIDAPVGRHPTHKTRMAVV--RGGREALSTWRVLLADPHGGGGTGWTLVAVRIH 273 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYG---DREFDRQLTEAGTGLNRLFLHAAALKFTHPGT 294 TGRTHQIRVH Q+ GHP+ D YG RE + R LHA + F HP T Sbjct: 274 TGRTHQIRVHMQHTGHPLWGDALYGGMPGREELQTTPALAQTATRQMLHAWKISFDHPVT 333 Query: 295 GEVMRIEAPMDEGLKRCLQKL 315 G M+ P ++ L Sbjct: 334 GAPMQFTLPPPADFGTLIRDL 354 >UniRef50_A8ZXZ8 Pseudouridine synthase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZXZ8_DESOH Length = 329 Score = 346 bits (888), Expect = 7e-94, Method: Composition-based stats. Identities = 97/320 (30%), Positives = 148/320 (46%), Gaps = 24/320 (7%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + +A G R+D + Q + +++ G + V+ + KP YK+ + Sbjct: 9 LVTSAGHDGLRLDTLVAGQW-DCSRHSAALLIKNGTILVDGRPQKPSYKVGVNQSIT--- 64 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRA 129 + P +L+ED +LV+NKP G VH G G + L Sbjct: 65 -----GRIPSQKPEKPGPEPAPLPLLFEDAFLLVVNKPPGLVVHPAPGHEGGTLVNRLLH 119 Query: 130 LRP------EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 P E +VHRLDR+TSG L+VAK +A ++L + + + ++K YLALV GQ Sbjct: 120 HFPAIGTVGEPDRPGIVHRLDRNTSGALVVAKTAAAHQALSDMFKSRQVRKTYLALVYGQ 179 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 +S V P+ ++ L+ + V S + +P+ETR+KV + + A+L+ TGRTHQ Sbjct: 180 MKSTGGVVTLPIGRHSLERKKMSVS-SPQARPAETRWKVRKAFVDASLLELEIHTGRTHQ 238 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQL-------TEAGTGLNRLFLHAAALKFTHPGTGE 296 IRVH P+ D Y + ++ E R LHA L+F HP TG Sbjct: 239 IRVHCTALQRPVVGDPTYPCKWTRKRQHFSSRASFELLNAAGRQMLHAWRLEFDHPVTGA 298 Query: 297 VMRIEAPMDEGLKRCLQKLR 316 M AP+ E +K L LR Sbjct: 299 PMCFTAPLFEDIKEMLHLLR 318 >UniRef50_A6DUC9 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DUC9_9BACT Length = 323 Score = 346 bits (888), Expect = 8e-94, Method: Composition-based stats. Identities = 91/329 (27%), Positives = 143/329 (43%), Gaps = 26/329 (7%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRV--NKKRIKP-- 56 M+ + QR+D ++ QL ++ + + L+ G + + +I Sbjct: 1 MEVPEGYTHSWVVDEFNECQRLDRYISQQLPEYSRTFLQKSLKDGAFELVRSGAKINARM 60 Query: 57 EYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGG 116 + GD V A+ + I+YEDD ILV+NKP+G VH G Sbjct: 61 SENVIEGDFVHYKMPEEADE-------STLLPEDIELDIIYEDDDILVVNKPAGMVVHPG 113 Query: 117 SGLSFGVIEGLR---------ALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQL 167 +G G + A+ + +VHRLD++TSGV++VAK L L Sbjct: 114 AGNYTGTLVNALLGRDLDTFSAMDDGSSRPGIVHRLDKETSGVIIVAKSAKNLDKLSRSF 173 Query: 168 REKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERI-VRVSQEGKPSETRFKVEERY 226 + ++K Y+AL RG + ++ + + ++ + S GK + + +KV Sbjct: 174 ARRDVEKYYVALCRGTIRVGRDTITSHIGRSRSNRQKMENTNDSNRGKEAISHYKVLADN 233 Query: 227 AFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAA 286 ATLV+ TGRTHQIRVH HP+ D YG R D + + +R LHA Sbjct: 234 NGATLVKLKIDTGRTHQIRVHMSGINHPVVGDKLYGVRRLDEKESP-----DRHILHAWR 288 Query: 287 LKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 + HPGT E+M AP+ + K K Sbjct: 289 TRIIHPGTQEIMTFTAPLHDDFKSVCDKF 317 >UniRef50_Q0A8Q9 Pseudouridine synthase n=4 Tax=Ectothiorhodospiraceae RepID=Q0A8Q9_ALHEH Length = 327 Score = 346 bits (888), Expect = 8e-94, Method: Composition-based stats. Identities = 162/314 (51%), Positives = 206/314 (65%), Gaps = 6/314 (1%) Query: 3 TETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEA 62 V+ V I ++AGQR+DNFL QLKGVP+S+IYR+LR G+VRV+ KR KP +L Sbjct: 10 KSMSGVRQVRIGPEDAGQRVDNFLMRQLKGVPRSLIYRLLRSGQVRVDGKRTKPPRRLAT 69 Query: 63 GDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG 122 G+ VRIPPV+ R + +P + LA ILYEDD +LV++KPSG AVHGGSGL++G Sbjct: 70 GETVRIPPVQT--RAPQEATPPARLQGELAQRILYEDDRLLVIDKPSGLAVHGGSGLAWG 127 Query: 123 VIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 +IE LR RP A FLELVHRLDR TSG L+VAK+RSALR LHEQLR + K YLAL+ G Sbjct: 128 LIEVLRQARPSAPFLELVHRLDRATSGCLMVAKRRSALRELHEQLRTGAVHKRYLALLTG 187 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 V+APL + +G VRV+ GK + T F+ R TL TGRTH Sbjct: 188 ALGRGPIPVEAPLERRSGPAGG--VRVASHGKLARTVFRAVARPGGMTLAEADIATGRTH 245 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH + G PIA DDRYG+R +R+L G GL RLFLHA L+ + PGTG+ + IEA Sbjct: 246 QIRVHAAHLGMPIAGDDRYGERAVNRRLR--GLGLKRLFLHAHRLELSAPGTGQPLSIEA 303 Query: 303 PMDEGLKRCLQKLR 316 P+ + L + +L+ Sbjct: 304 PLPDELAAVVAQLQ 317 >UniRef50_C9RQF0 Pseudouridine synthase, RluA family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQF0_FIBSS Length = 424 Score = 346 bits (888), Expect = 8e-94, Method: Composition-based stats. Identities = 90/325 (27%), Positives = 151/325 (46%), Gaps = 26/325 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + G+RID FL ++ V ++ + +++ GEV+V ++ +++E G V + Sbjct: 3 YIVEEKHNGERIDKFLVGVMENVSRTDVQKLIEAGEVKVGGGKVSKNFRVETGMAVVVEK 62 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 + E + + I+YEDD I+V+NKP VH G+G+S G + Sbjct: 63 MIEKES-------STLEPEDIPLNIVYEDDDIVVINKPRNLVVHPGNGVSKGTLAAALLY 115 Query: 131 R--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 +VHRLD+DT G+++VAK +A R L QL + + + Y ALV G Sbjct: 116 HFKENLSTVNGPLRPGIVHRLDKDTPGLMVVAKNDAAHRHLAHQLETRTLHRTYNALVWG 175 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 + ++ AP+ +N + V + GK S T + ++ +A ATL+ +GRTH Sbjct: 176 CPRDLEGTIDAPIGRNPKNRLKMAVV--KGGKESRTHYVAKQFFAIATLLELQLESGRTH 233 Query: 243 QIRVHTQYAGHPIAFDDRYGDRE---------FDRQLTEAGTGLNRLFLHAAALKFTHPG 293 QIRVH++Y GHP+ D Y R+ + L A ++ HP Sbjct: 234 QIRVHSRYTGHPVVGDPLYDGRDESLNRVPPLMKPVAEKVLEIAPAQLLQAVKIELIHPR 293 Query: 294 TGEVMRIEAPMDEGLKRCLQKLRNA 318 T + + + PM+E L+ L+ Sbjct: 294 TNKKLTFKVPMEEPFANVLKLLKKE 318 >UniRef50_C1A885 Pseudouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A885_GEMAT Length = 329 Score = 345 bits (887), Expect = 9e-94, Method: Composition-based stats. Identities = 102/322 (31%), Positives = 148/322 (45%), Gaps = 22/322 (6%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 M E+ SV + AG R+D + V ++ ++ G V VN R K YK Sbjct: 1 MTGESASVSEFTVG-YTAGGRLDLLVADH-ASVSRTQAATLIANGNVLVNGAREKASYKG 58 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 E GD VR+ R+ A + ++YED+H+LV++K +G VH G Sbjct: 59 ETGDVVRVTIPPPPGRDIVA--------EQIPLDVVYEDEHLLVVDKAAGMVVHPAPGNW 110 Query: 121 FGVIEGLRALRPEA-------RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQ 173 G + R E LVHRLD+DTSG+L+VAK +A R+L L + + Sbjct: 111 TGTLVNALLGRGEPLAEGGGEDRAGLVHRLDKDTSGLLVVAKSDAAHRTLSSALAARQVT 170 Query: 174 KDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVR 233 + Y A+ G +V+ P+ ++ + Q GK S T F R+ L+R Sbjct: 171 RRYAAVCWGHLAEERITVEKPIARDPRDRTRMAIV--QSGKASRTDFTRLARFDSVDLLR 228 Query: 234 CSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPG 293 TGRTHQIRVH GHP+ DD Y A R FLHAA L+F HP Sbjct: 229 AHLHTGRTHQIRVHLASTGHPVVGDDTY---GGGGGRRLALLPPRRHFLHAAWLRFRHPI 285 Query: 294 TGEVMRIEAPMDEGLKRCLQKL 315 +G+++ + +P+ L+ L L Sbjct: 286 SGDLIDLRSPLPADLRTSLAAL 307 >UniRef50_C1SM47 Pseudouridine synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SM47_9BACT Length = 302 Score = 345 bits (887), Expect = 1e-93, Method: Composition-based stats. Identities = 87/313 (27%), Positives = 148/313 (47%), Gaps = 22/313 (7%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 K + + + R+D ++ + +S R++ V+VN +YK+++GD + I Sbjct: 6 KTIKLNVETGNMRLDAYIADN-TDISRSFAERLVTDEFVKVNGVSKPKKYKVKSGDSIVI 64 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 R E V + I+Y+ D V+NKP+G VH G + I Sbjct: 65 DVPREEVPELTPVK--------MDIEIIYDCDEFAVINKPAGITVHPAPGHADDTIVNAM 116 Query: 129 ALRPE-----ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 + +VHRLD+DTSG+++VAK R + L + ++ + K YLA+ G+ Sbjct: 117 LAEFDITDDNDLRPGIVHRLDKDTSGLMIVAKNRKSREVLSKVFADRDIDKRYLAVCWGK 176 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 + +++ P+ ++ VR ++G+ S++ +V ++ A L TGRTHQ Sbjct: 177 PKELEFTIEQPIGRHYKDRKRMCVR--EDGRYSKSGVRVLKQNNNAFLAEIRIFTGRTHQ 234 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH +AG P+A D YG R+ + + R LH+ L F P TGE M E+P Sbjct: 235 IRVHMSHAGFPLAGDVVYGHRQSLK------LPIKRQALHSFRLAFVSPFTGEDMVFESP 288 Query: 304 MDEGLKRCLQKLR 316 + +K + L+ Sbjct: 289 LPLDMKELIIGLK 301 >UniRef50_Q2SS88 Pseudouridine synthase n=4 Tax=Mollicutes RepID=Q2SS88_MYCCT Length = 322 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 82/328 (25%), Positives = 151/328 (46%), Gaps = 24/328 (7%) Query: 8 VKIVAITADEAGQRIDNFLRTQLK--GVPKSMIYRILRKGEVRVNKKRIKPE-YKLEAGD 64 + + + + R+D L L +S I +++++ + VN + I + ++ Sbjct: 1 MNKITLNSVNTTLRLDKLLVELLTSYDYSRSYIQKLIKEECISVNNQIITSNNFLVKPNS 60 Query: 65 EVRIP------PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG 118 ++ I + + ++ + P++ K + I+Y+DD +LV+NK + VH Sbjct: 61 QIIITIKDPVLDPNITKNKDPVLDPNITKNKDIDLNIIYQDDDLLVINKQNNITVHPSLN 120 Query: 119 LSFGVIEGLRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG 171 + I +VHR+D+ T+G+L+VAK + L E + Sbjct: 121 NTNNTIVNALLASDVELSSINGELRPGIVHRIDKQTTGLLIVAKNDKTHKLLSEMFKNHQ 180 Query: 172 MQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATL 231 + K+YLA+V G + + + AP+ ++ + V + K + T F+V ER+ TL Sbjct: 181 IYKEYLAIVTGVIKPNKGLIDAPIGRSQTDRKKMSVTA-KNSKHAITTFEVVERFLKNTL 239 Query: 232 VRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTH 291 ++C TGRTHQIRVH Y HP+ D YG + + +LHA LKFTH Sbjct: 240 IKCQIQTGRTHQIRVHFNYINHPVLNDPIYGKKHQEFTDF-------GQYLHAYKLKFTH 292 Query: 292 PGTGEVMRIEAPMDEGLKRCLQKLRNAR 319 P T + + + +P+ + +++LR Sbjct: 293 PITKKEIELISPLPKEFDDKIKELRGEN 320 >UniRef50_A9NGF1 Pseudouridine synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NGF1_ACHLI Length = 297 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 97/314 (30%), Positives = 149/314 (47%), Gaps = 27/314 (8%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 IT R+D+FL + +S I +++ G V VN K YKL+ DE+ + Sbjct: 2 KFKITEQTD-SRLDHFLVAS-TELNRSQITTLIKDGLVMVNGLTTKAGYKLKNSDEITLN 59 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI----- 124 E + K + I+YEDD I+V+NKP G VH S + Sbjct: 60 LEAKEET-------NPLKPKNIDLNIVYEDDDIMVINKPKGLVVHPSETFSETTLVSGLL 112 Query: 125 ---EGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 + L + ++HR+D+DTSG++LVAK A + L + L+ ++++Y+ALV Sbjct: 113 HHTDTLSTHNDDPLRPGILHRIDKDTSGLILVAKTNEAHKILAQDLKSHDIKREYIALVE 172 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 G + + AP+ ++ + V + GKP+ T F+V + TL+ C TGRT Sbjct: 173 GVLDHNKGVIDAPIARHPKIRTKMAVVAT--GKPAITHFEVMRTFRDHTLLHCKLETGRT 230 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVH Y HP+ D YG + + + LHA L+F HP T +VM +E Sbjct: 231 HQIRVHLAYIKHPVTGDPLYGTKAKILK--------DGQLLHAFRLEFVHPITKKVMMLE 282 Query: 302 APMDEGLKRCLQKL 315 AP+ + L L Sbjct: 283 APLPPEFESYLVTL 296 >UniRef50_C0QPR5 Pseudouridine synthase n=4 Tax=Hydrogenothermaceae RepID=C0QPR5_PERMH Length = 319 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 83/328 (25%), Positives = 146/328 (44%), Gaps = 23/328 (7%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKL 60 + + + +R+D FL + +S ++++ G V + K IK P YK+ Sbjct: 1 MNHKDEILSFMVDEEYDRKRLDQFLSSVYPEYSRSYFQKLIKDGYVFEDGKDIKKPSYKV 60 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 G E+ + E K + IL+ED+ I V+ KP+G VH G + Sbjct: 61 RKGQEITLVIPPPETLEI--------KPENIPVDILFEDEDIAVVYKPAGMVVHPSPGHT 112 Query: 121 FGVIEGLRAL-------RPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQ 173 G + +VHRLD+DT+G++++AK A + L +Q +E+ + Sbjct: 113 SGTLVNALLYHFRNISEYGGKERAGIVHRLDKDTAGLMIIAKSEFAHKELQKQFQERTVD 172 Query: 174 KDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY--AFATL 231 K Y+A+V G Q+ + P+ ++I + + + + T + V+ R T+ Sbjct: 173 KRYIAVVTGIVQNDHGFIDLPIGRSIYNRKKMGTEATNL-RDALTEYWVKNRSEKENLTV 231 Query: 232 VRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLN---RLFLHAAALK 288 V TGRTHQIRVH GHP+ D YG ++ + + + + L A + Sbjct: 232 VDIKLHTGRTHQIRVHFSAIGHPLFNDKVYGFKKSQLRSEKMRSISDQTLYHALLAYRIA 291 Query: 289 FTHPGTGEVMRIEA-PMDEGLKRCLQKL 315 F HP TGE + I + E + + ++ + Sbjct: 292 FDHPRTGEKIDITLQKLPEHISKVIEAI 319 >UniRef50_C0QAZ3 RluD1 n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QAZ3_DESAH Length = 313 Score = 344 bits (883), Expect = 3e-93, Method: Composition-based stats. Identities = 92/315 (29%), Positives = 153/315 (48%), Gaps = 22/315 (6%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 + I+ G+R+D + + + + R + KG + V+ R KP Y+++ G+ V Sbjct: 4 KIEISEALMGRRLDLVVADVVHDTTRGAVVRAIEKGLILVSGNRKKPAYRVKPGEVVCGS 63 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 +E E + +++ L+ED I+V+NKP+G VH G+G S G + Sbjct: 64 LGSESEIESKPR------AESISLDFLHEDQWIVVVNKPAGMVVHPGAGNSSGTLLNALL 117 Query: 130 LRPEAR---------FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 + +VHRLD+DTSG ++VAK + A L ++ R + ++K Y+AL Sbjct: 118 HHFPSLTDTHCDPPLRGGIVHRLDKDTSGTIVVAKSKKAYEFLQKEFRFRRVEKRYIALA 177 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 G + P+ ++ + V ++ +P+ET ++V + A TL+ TGR Sbjct: 178 TGIITETQGRITLPIGRHPIHRKRMAVN-TERARPAETLWRVLGQMAGHTLLDVGLKTGR 236 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH + GHP+A D YG R + R LHA L F HP +G+ + Sbjct: 237 THQIRVHFRALGHPLAGDRVYGFRG------KQSARAPRQMLHAGTLGFRHPWSGKRVEF 290 Query: 301 EAPMDEGLKRCLQKL 315 AP+ E + L++L Sbjct: 291 TAPLPEDMVEVLERL 305 >UniRef50_B8GZR6 Pseudouridine synthase n=2 Tax=Caulobacter vibrioides RepID=B8GZR6_CAUCN Length = 342 Score = 344 bits (883), Expect = 3e-93, Method: Composition-based stats. Identities = 91/318 (28%), Positives = 136/318 (42%), Gaps = 26/318 (8%) Query: 14 TADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKK-RIKPEYKLEAGDEVRIPPVR 72 + AGQR+D L + ++ + ++ +G + + + K AG Sbjct: 32 PENLAGQRLDKVLAPLFPDLSRARLQALIAEGRLTFDGETVADASRKARAG--------- 82 Query: 73 VAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR- 131 V +P + AL ILYED H++V++K +G AVH G G + Sbjct: 83 VYSLVVPPPAPADPEPEALPLSILYEDAHLIVVDKAAGMAVHPAPGTYNGTLVNALLHHC 142 Query: 132 -------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQW 184 +VHRLD+DTSGV++ AK +A R L + + Y+AL RG Sbjct: 143 GASLSGVGGVARPGIVHRLDKDTSGVMVAAKSDAAHRGLSTLFATHDIDRLYVALTRGAP 202 Query: 185 QSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF-----ATLVRCSPVTG 239 ++Q + ++ + V + G+ + T ++VE + A V C TG Sbjct: 203 NPPTGTIQTQIGRSPGDRKKMAV-LRAGGREAITHYRVEAAFGPADRPLAARVACRLETG 261 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTE--AGTGLNRLFLHAAALKFTHPGTGEV 297 RTHQIRVH G P D YG + + E GL R LHAA L F HP TGE Sbjct: 262 RTHQIRVHMASKGSPCLGDPVYGAAQPAAAVRERIEAAGLRRQALHAAVLGFVHPITGET 321 Query: 298 MRIEAPMDEGLKRCLQKL 315 +R E P+ + L Sbjct: 322 LRFETPLPADMDALEVAL 339 >UniRef50_C6XNC0 Pseudouridine synthase n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XNC0_HIRBI Length = 369 Score = 343 bits (880), Expect = 6e-93, Method: Composition-based stats. Identities = 95/354 (26%), Positives = 149/354 (42%), Gaps = 55/354 (15%) Query: 2 KTETPSVKIVAI--TADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEY 58 + + + + I A+ AG+R+D +L + +S I+ KG+V ++ I P++ Sbjct: 12 SPNSDTTQSIVIVAPAEFAGERLDKWLPIAAPELSRSRAKAIIEKGDVLLDDTAITSPKH 71 Query: 59 KLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSG 118 K+ A I + E + +L+ED+H+++LNKP+G VH G Sbjct: 72 KVIADGRYVILMPPPLDAEP--------LPEDIPLDVLFEDEHLIILNKPAGLVVHPAPG 123 Query: 119 LSFGVIEGLRALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREK 170 + G + +VHRLD+DTSGV++ AK A L + Sbjct: 124 STSGTLVNALLHHCAGQLPGIGGVARPGIVHRLDKDTSGVMVAAKTEFAHTGLSSLFQAH 183 Query: 171 GMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIV------------------RVSQE 212 M++ YLA+ RG + + ++ + ++ + V Q+ Sbjct: 184 FMERAYLAVTRGAPRPLLGKIETRIARSTTDRKKMAVVRESRLSASAEWHGESEEDYEQK 243 Query: 213 GKPSETRFKVEERYAF---------ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGD 263 GK + T +KV E++ ATL C TGRTHQIRVH + G P+ D YG Sbjct: 244 GKHAITNYKVLEQFGRIDATSGLPAATLTECRLETGRTHQIRVHMAHIGAPLLGDQTYGR 303 Query: 264 REFDR---------QLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGL 308 + T A R LHAA L F HP TGE +R E E + Sbjct: 304 YRGLKAHGSGPAFETATHACKEFKRQALHAAILGFEHPVTGENLRFEVEPPEDM 357 >UniRef50_Q21K97 Pseudouridine synthase n=10 Tax=Gammaproteobacteria RepID=Q21K97_SACD2 Length = 321 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 169/313 (53%), Positives = 214/313 (68%), Gaps = 6/313 (1%) Query: 5 TPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGD 64 +V+ + ++ DEAGQR+DN+L +LKGVPKS+IYR++RKGEVRVNK R KPE KL GD Sbjct: 2 AQNVQFLTVSEDEAGQRLDNYLLARLKGVPKSLIYRVIRKGEVRVNKGRAKPERKLAGGD 61 Query: 65 EVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI 124 VR+PPVRVAE E V L + ++ ++ LV+NKP+G AVHGGSG++ G+I Sbjct: 62 VVRVPPVRVAESPE-PVPISKTLKGVLDNAVIADEPGYLVVNKPAGLAVHGGSGVTLGLI 120 Query: 125 EGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLR-EKGMQKDYLALVRGQ 183 E LR P+ +LELVHRLDRDTSG +LVAKKRS LR L E R EK + K YLALV G+ Sbjct: 121 EALRQAFPQYSYLELVHRLDRDTSGCILVAKKRSMLRYLQELFRGEKRIHKRYLALVIGR 180 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF-ATLVRCSPVTGRTH 242 W S V APLL+ LQSGERIVRVS +GKPS+T F V +R+ ATLV P+TGRTH Sbjct: 181 WPSRRNLVDAPLLRKELQSGERIVRVSLDGKPSKTEFNVVQRFGESATLVEARPITGRTH 240 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH Q+ GHP+ D +YG+ FD + + G+NRLFLHAA L F + GE + IE Sbjct: 241 QIRVHAQHQGHPLVGDPKYGNEVFDLSVKK--LGVNRLFLHAAGLSFKN-ADGEQVNIEV 297 Query: 303 PMDEGLKRCLQKL 315 P+ L+ + Sbjct: 298 PLPAELQSVVAAF 310 >UniRef50_D1Y3Y9 Pseudouridine synthase n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3Y9_9BACT Length = 345 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 93/323 (28%), Positives = 159/323 (49%), Gaps = 28/323 (8%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEV---RVNKKRIKPE 57 M+ + +A+ +++G R+D FL +L + +S ++ G V +V K+I+P Sbjct: 32 MEKMNGEIYELAVPEEDSGARLDLFLAGELS-LSRSRARSLIDGGAVSSGQV--KKIRPA 88 Query: 58 YKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGS 117 +K++ G R+ A + ++YEDD ++V+NKP+G VH G+ Sbjct: 89 FKIQPGQIYRVEIPEAAPA--------EIAAQDMPFDVVYEDDDVIVVNKPAGVVVHPGA 140 Query: 118 GLSFGVIEGLRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREK 170 G G + R ++ +VHRLD TSG+++VA+ +A R L E + Sbjct: 141 GRPDGTLVNGLMFRYPEIGRIGDSVRPGIVHRLDVGTSGLMVVARSDAAFRGLTEAFQAH 200 Query: 171 GMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFAT 230 + K+YL L G ++ +V AP+ ++ + V S +G+ + T +KV A Sbjct: 201 EVLKEYLGLGVGALKAPEGTVDAPIGRDPRNRLKMCV--SWDGRDAVTDYKVLWTRARCN 258 Query: 231 LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFT 290 L+R TGRTHQIRVH + G + D YG ++ + + + +R+FLH+ L F Sbjct: 259 LIRVRLHTGRTHQIRVHMRALGCSLDGDTLYGPKDPAQHILK-----DRVFLHSWRLGFR 313 Query: 291 HPGTGEVMRIEAPMDEGLKRCLQ 313 HP +GE + AP+ L L+ Sbjct: 314 HPVSGERLEFRAPLPPELIAALR 336 >UniRef50_A3Y8C6 Pseudouridine synthase n=1 Tax=Marinomonas sp. MED121 RepID=A3Y8C6_9GAMM Length = 322 Score = 341 bits (875), Expect = 2e-92, Method: Composition-based stats. Identities = 157/314 (50%), Positives = 212/314 (67%), Gaps = 6/314 (1%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 + + P VKI I + QRIDN+L QLKGVPK IY +LRKGE+RVNKKR+KP+ ++ Sbjct: 8 ENDRPKVKINTIDENNHDQRIDNYLMAQLKGVPKGRIYNLLRKGEIRVNKKRVKPDTRIY 67 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 +GD VRI P+ V +E + PH + + I+YED ++V+NKPSG AVHGGSGL+F Sbjct: 68 SGDIVRIAPIVVEPPKEASPVPHKL-MQLIESRIVYEDAGLMVVNKPSGLAVHGGSGLNF 126 Query: 122 GVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG-MQKDYLALV 180 G++E +R LR + + +ELVHRLDRDTSG+++++KKRS L+ LH LREK +QK Y ALV Sbjct: 127 GLVEVVRQLRSKEKSIELVHRLDRDTSGLIMISKKRSVLKQLHAALREKEGVQKTYQALV 186 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 G W + V APLLKN L+SGERIV+V EGK S TRFK+ ++ +LV C PVTGR Sbjct: 187 YGSWPKRKQQVNAPLLKNELKSGERIVKVHTEGKESLTRFKLLRQFEGYSLVECEPVTGR 246 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVHT +AG+PI DD+Y E +++ G G RL LHAA L + + + Sbjct: 247 THQIRVHTLHAGYPIVGDDKYSPSEQNKEAK--GLGFKRLCLHAAKLDIM--LNDQRILV 302 Query: 301 EAPMDEGLKRCLQK 314 E P+D+ + + + Sbjct: 303 EVPIDDEWRNAMNQ 316 >UniRef50_A4WSV2 Pseudouridine synthase n=41 Tax=Alphaproteobacteria RepID=A4WSV2_RHOS5 Length = 349 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 90/346 (26%), Positives = 148/346 (42%), Gaps = 47/346 (13%) Query: 1 MKTETPSVKIVAITA-DEAGQRIDNFLRTQLKG---VPKSMIYRILRKGEVRVNKKRIK- 55 M P ++IT ++ +R+D L + + +S + +++ +G VR+ + Sbjct: 1 MAILPPHGGTLSITIGEDPPERLDKALAREAPEEAALSRSRLMKLIAEGAVRLKGVPVTD 60 Query: 56 PEYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHG 115 P+ ++ G I AE E A+ +++ED ++V++KP G VH Sbjct: 61 PKARVLEGQVYEIVTGAAAEVE--------ALPEAIPLSVVWEDADLIVIDKPVGMVVHP 112 Query: 116 GSGLSFGVIEGLRALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQL 167 G G + + +VHR+D+DTSG+L+VAK A + L Q Sbjct: 113 APGQWTGTLVNALLHHCGASLSGIGGEKRPGIVHRIDKDTSGLLVVAKTDRAHQGLAAQF 172 Query: 168 REKGMQKDYLALVRGQWQSHVK----------------SVQAPLLKNILQSGERIVRVSQ 211 +++ YLALV G + + + ++ + V + Sbjct: 173 EAHTVERRYLALVHGVPEPSDPRLRGIRGVSFEPGGVLRIATGIARHRTDRQRQAVTF-E 231 Query: 212 EGKPSETRFKVEERYAF---ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDRE--- 265 G+ + TR ++ ER+ A LV C TGRTHQIRVH + GH + D YG R Sbjct: 232 GGRHAVTRARLLERFGTPPAAALVECRLETGRTHQIRVHMSHVGHGLIGDQTYGGRRKLS 291 Query: 266 ---FDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGL 308 + +A R LHAA L F HP TGE + E+P+ + Sbjct: 292 AKAVGAEAAQAAEAFPRQALHAATLGFCHPVTGEDLSFESPLPADM 337 >UniRef50_A0Q1S9 Pseudouridine synthase n=32 Tax=Clostridium RepID=A0Q1S9_CLONN Length = 301 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 89/320 (27%), Positives = 151/320 (47%), Gaps = 23/320 (7%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 E ++ + + DE R++++L+ I + R+G ++VN + ++ Y L+ Sbjct: 1 MEEKNNILKIKVQIDEEEIRLNHYLKNH-ANCSSRFIRKAAREGRIKVNNENVRLSYMLK 59 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 D + + R ++ + ++YED I+V+NKP G VH Sbjct: 60 NDDVIELQINREENQDIV--------PEKMHLDVIYEDKDIVVINKPKGIVVHPTKRHQN 111 Query: 122 GVIEGLRALRPEARF----LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 G + + + + LV+RLD DTSG++L+AK + +L +++ K YL Sbjct: 112 GTLSNGVLYYFKEKNENSIVRLVNRLDMDTSGLVLIAKNAYSHMALSRDMQKDDFVKSYL 171 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPV 237 A+V G + + P+ + + R + + G+ S TRFKV E Y A LV + Sbjct: 172 AIVHGNLKEKSGVINKPIYRVGEGTLRR--VIDERGQRSVTRFKVVESYEDADLVELTLE 229 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQIRVH GHPI D YG E ++R LHA L+ HP G + Sbjct: 230 TGRTHQIRVHLSSIGHPIYGDSLYG--------KEEHEYIDRQALHAYKLQIPHPKDGRI 281 Query: 298 MRIEAPMDEGLKRCLQKLRN 317 +++E+ + + +K + KL+ Sbjct: 282 LKLESDLPDDMKNLISKLKK 301 >UniRef50_B4U613 Pseudouridine synthase, RluA family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U613_HYDS0 Length = 308 Score = 340 bits (874), Expect = 4e-92, Method: Composition-based stats. Identities = 89/318 (27%), Positives = 142/318 (44%), Gaps = 18/318 (5%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEV 66 + + IT D AG+RID + K + + I RI+++ V +N +++ K K+ D + Sbjct: 1 MPQIKITPDIAGERIDVLISNIYKDISREYIKRIIKENGVLINGEKVFKSSKKVFENDVL 60 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 E K + ILYED+ + V+ KPSG H G G + Sbjct: 61 EF--------EIPPPKKLDVKAQDIHIDILYEDNDLAVVVKPSGMPSHTGPGHDENTLVN 112 Query: 127 LRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 + +VHRLDR T G++++AK + + L + K + K Y A+ Sbjct: 113 ALLAKFGDLSVIGGVERPGIVHRLDRYTHGLMVIAKNDVSHQKLSLMFKNKEVDKHYKAI 172 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTG 239 V G + ++++ + ++ + V EGK + T++ +E+ A+L+ TG Sbjct: 173 VYGISRFKEQTIETFIRRHPTNRLKFEVA--NEGKLAITKYSLEKPLKNASLLDIKIYTG 230 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RTHQIRVH Y GHPI D YG + T R L A L F HP + + M Sbjct: 231 RTHQIRVHMSYIGHPIVGDTLYGYKHSYFDKTLEHMIGKRFLLVAYKLSFLHPKSQKPME 290 Query: 300 IEAPMDEGLKRCLQKLRN 317 E M + K L+ L + Sbjct: 291 FEIDMPDYFKNVLKYLES 308 >UniRef50_A3DDK9 Pseudouridine synthase, RluA family n=3 Tax=Clostridium thermocellum RepID=A3DDK9_CLOTH Length = 318 Score = 340 bits (873), Expect = 5e-92, Method: Composition-based stats. Identities = 85/325 (26%), Positives = 146/325 (44%), Gaps = 27/325 (8%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 + + +G+ + + L+ QLK + + +I ++ R+G++ N + + + D + + Sbjct: 4 KYTVDKETSGKTVKHILKKQLK-LSERLIKKLKRQGKILCNNRPVYVNAVVCENDIIEVD 62 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 + S + + I+YED+ ++ LNK G VH G + A Sbjct: 63 L-------DFDDSGIFIQPEDIPIDIIYEDEFLIALNKQPGIVVHPTCSHPGGTLANAVA 115 Query: 130 LRPEAR----FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 + + + V RLDRDTSG+++ AK L Q+ +K K+Y+ +V + Sbjct: 116 FHLQKKGIVKKIRPVIRLDRDTSGIIIFAKNPYCQEFLIRQMNDKTFIKEYIGIVHKVLE 175 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245 + ++ P+ + + +S +G P+ T + V ER ATLV+ TGRTHQIR Sbjct: 176 NDNGTIDLPIARKPGSI--MLRHISPDGDPAVTHYTVLERLNGATLVKFRLETGRTHQIR 233 Query: 246 VHTQYAGHPIAFDDRY----------GDREFDRQLTEAGTG---LNRLFLHAAALKFTHP 292 VH Q GHP+ D Y G+ Q + R LH+ F HP Sbjct: 234 VHCQAIGHPLLGDTLYPFEDTPYSLSGNNPHITQANTPSITSGIITRQALHSQRAVFLHP 293 Query: 293 GTGEVMRIEAPMDEGLKRCLQKLRN 317 T +++ I AP+ E +K L+ LR Sbjct: 294 FTKKILEITAPIPEDMKSALEILRK 318 >UniRef50_D1BAB3 Pseudouridine synthase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1BAB3_THEAS Length = 320 Score = 339 bits (872), Expect = 6e-92, Method: Composition-based stats. Identities = 89/310 (28%), Positives = 143/310 (46%), Gaps = 26/310 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVN-KKRIKPEYKLEAGDEVRIP 69 + D G R+D L ++ GV +S +++++G V+V+ R+KP K+ G V Sbjct: 22 FPVGEDGEGHRLDFVLSREI-GVSRSYASKLIKEGMVQVSWSPRVKPSLKVRVGGTVTAQ 80 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 E E + + ++Y+D ++V++KP+G VH G G + Sbjct: 81 LPPSEELE--------LEPQDVPFRVVYQDQDLVVVDKPAGLVVHPAPGHWRGTLVHGLL 132 Query: 130 LRP-------EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 R + +VHRLD TSG+++VA+ A+ L +++ + K YLA+ G Sbjct: 133 YRYPDLMELNGVKRPGIVHRLDATTSGLMVVARNGLAMEGLVRAFKDRRVGKVYLAMAAG 192 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 + SV P+ ++ + G+ + TR++V +LV C TGRTH Sbjct: 193 TLR-GEGSVSLPIGRDPDNRKR--MACVPWGREALTRYRVIWSRGGYSLVACQIKTGRTH 249 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH + GHP+ D YG G L R+FLH+ L+F HP TG M Sbjct: 250 QIRVHMRSLGHPLVGDRIYGGP------CPEGFPLGRVFLHSWRLEFDHPRTGAPMSFIC 303 Query: 303 PMDEGLKRCL 312 P+ L R + Sbjct: 304 PLPPDLVRFI 313 >UniRef50_Q13E92 Pseudouridine synthase n=28 Tax=Alphaproteobacteria RepID=Q13E92_RHOPS Length = 426 Score = 339 bits (871), Expect = 7e-92, Method: Composition-based stats. Identities = 94/337 (27%), Positives = 149/337 (44%), Gaps = 35/337 (10%) Query: 4 ETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEA 62 + + V + DE R+D L T+ + +S + ++ G V + ++ P Y + Sbjct: 96 SSGHLLEVVVAGDEGSPRLDRVLATRCPALSRSRLKALILDGRVAIRGAPVRDPAYHAAS 155 Query: 63 GDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG 122 G+ + I + A+A I++EDD I+V++KP G VH +G G Sbjct: 156 GETITI--------DVPPPVAPEPAGEAIALEIVHEDDDIIVIDKPRGLVVHPAAGHETG 207 Query: 123 VIEGLRALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREK---- 170 + R +VHRLD+DT+G+++ AK A +SL Q + Sbjct: 208 TLVNALIAHCGESLSGIGGVRRPGIVHRLDKDTTGLMVAAKNDRAHQSLSAQFADHGRTG 267 Query: 171 GMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF-- 228 +++ Y A V G ++ AP+ ++ + VR G+ + T ++V E + Sbjct: 268 ELRRGYYAFVWGAPNRIRGTIDAPIDRHPHAREKMAVR--DGGREAITHWEVLETFTGRS 325 Query: 229 ----ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDR------EFDRQLTEAGTGLN 278 +L+ C TGRTHQIRVH + GHP+ DD YG + A T L Sbjct: 326 GGEIVSLIACQLETGRTHQIRVHLAHIGHPLLGDDVYGPHFKTKASQLRPDARAALTDLG 385 Query: 279 RLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 R LHA L HP TGEV+ E+ + LKR L Sbjct: 386 RQALHAYLLVLEHPSTGEVVAWESGLPADLKRLKAAL 422 >UniRef50_C6BSG2 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BSG2_DESAD Length = 549 Score = 337 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 82/317 (25%), Positives = 135/317 (42%), Gaps = 24/317 (7%) Query: 16 DEAGQRIDNFLRTQLK--GVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRIPPVR 72 + R+D F T L+ G+ + + ++ G +N K K P KL +E+ + Sbjct: 23 SDRNTRLDKFWGTALEEEGISRGKVKDWIKAGFAEINGKICKKPNQKLMGNEELTLK--- 79 Query: 73 VAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRALR 131 L I+Y D I V+NKP+G H G + + Sbjct: 80 ------GEAELTSLVPEELPLEIIYNDGKIAVINKPAGLTTHPAPSCPTGTLVHRMIHHF 133 Query: 132 PEAR-----FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 PE R +VHRLD+ TSG++ VA ++ ++ + K YLA+V G + Sbjct: 134 PEIRDMDEWRPGIVHRLDKFTSGLITVALNEHDRLAMSTAFADREVNKAYLAIVHGVPKR 193 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY--AFATLVRCSPVTGRTHQI 244 + P+ ++ + + V V + G+ + + ++V A+LV+ TGRTHQI Sbjct: 194 EFGEIDQPMGRHPVHKTKMAV-VLKGGRDARSEYEVLWSDPAGRASLVKVKIYTGRTHQI 252 Query: 245 RVHTQYAGHPIAFDDRYGDRE---FDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 RVH + GHP+ D YG +++ + R LHA +L FTHP + E + Sbjct: 253 RVHMAHIGHPLVGDQVYGSMPHAIWEQDQPQLAKLAERQMLHAYSLSFTHPDSEEELSFT 312 Query: 302 APMDEGLKRCLQKLRNA 318 E L+ L + Sbjct: 313 QAPPEDFINMLKALDKS 329 >UniRef50_Q4FN11 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q4FN11_PELUB Length = 326 Score = 337 bits (865), Expect = 4e-91, Method: Composition-based stats. Identities = 90/330 (27%), Positives = 147/330 (44%), Gaps = 34/330 (10%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRIP 69 + + DE R+D F+ + + ++ I ++ K ++++N + I P K+ +GDE+ + Sbjct: 7 LIVGEDENNLRLDVFINKRENLISRTRIKNLILKEKLKINDQIINSPSKKVLSGDEINLQ 66 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 E K I+YEDD +L++NKP+G +H G+G I Sbjct: 67 IPEPKEA--------SLKPYNFKLQIVYEDDDLLIINKPAGIIMHPGAGNYDETIVNALM 118 Query: 130 LR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 + +VHR+D+DTSG++++AK +L Q E + + Y L+ Sbjct: 119 HYNKDSLSTIGDELRPGIVHRIDKDTSGLIVIAKNNETHENLSHQFSEHTITRVYQLLIW 178 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF-----ATLVRCSP 236 G+ + + + ++ V S+ GK + T +K E + +LV C Sbjct: 179 GKLRPSSGKIDTFITRSSKNRQMMEVSNSK-GKRAITNYKTIEIFENDKTPTLSLVECRL 237 Query: 237 VTGRTHQIRVHTQYAGHPIAFDDRYG--------DREFDRQLTEAGTGLNRLFLHAAALK 288 TGRTHQIRVH + G+ I D G + D L L+R FLHA L Sbjct: 238 ETGRTHQIRVHMTHMGNSIMGD---GKYKKKYKKLKNIDTNLENLIYKLDRQFLHAQTLG 294 Query: 289 FTHPGTGEVMRIEAPMDEGLKRCLQKLRNA 318 F HP T E M + + + L+ L LRN Sbjct: 295 FIHPRTNEEMVFTSILPQELENILVLLRNT 324 >UniRef50_C8S0A2 Pseudouridine synthase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S0A2_9RHOB Length = 356 Score = 336 bits (864), Expect = 4e-91, Method: Composition-based stats. Identities = 85/343 (24%), Positives = 142/343 (41%), Gaps = 46/343 (13%) Query: 12 AITADEAGQRIDNFLRTQLKG---VPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVR 67 + ++ R+D L Q+ + +S + +++ G+V + + P+ ++ G E Sbjct: 22 VVIGEDPPDRLDKALARQVPEDAALSRSRLMKMIADGDVTLEGVAVTNPKARVAEGQEYL 81 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 + + + + + +++ED ++V++KP G VH G G + Sbjct: 82 LRLAPAVDID--------AQPEDIPLTVVWEDADLIVVDKPVGMVVHPAPGSYTGTLVNA 133 Query: 128 RALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 A+ +VHR+D+DTSG+L+VAK A L Q + + Y+AL Sbjct: 134 LLHHCGDTLSGVGGAKRPGIVHRIDKDTSGLLVVAKTDRAHHGLAAQFEAHSVTRHYIAL 193 Query: 180 VRGQWQSHVKS----------------VQAPLLKNILQSGERIVRVSQEGKPSETRFKVE 223 V G + + L ++ + V G+ + TR +V Sbjct: 194 VHGAPNAADPRLRGIRGVSFEPGGIVCIATNLARHKTDRQRQAVLFDS-GRHAVTRVRVL 252 Query: 224 ERYAF---ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDRE------FDRQLTEAG 274 E Y A LV C TGRTHQIRVH +AGH + D YG R + +A Sbjct: 253 ESYGTPPVAALVECWLETGRTHQIRVHMSHAGHALLGDQTYGGRRKVAPKAVGEAVAQAA 312 Query: 275 TGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 R LHAA+L F HP +GE + +P+ + LR Sbjct: 313 NDFPRQALHAASLGFVHPVSGEELLFTSPLPADMAALTAALRG 355 >UniRef50_B6BTS8 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=B6BTS8_9PROT Length = 306 Score = 336 bits (864), Expect = 5e-91, Method: Composition-based stats. Identities = 136/313 (43%), Positives = 196/313 (62%), Gaps = 10/313 (3%) Query: 4 ETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAG 63 + ++ + I QRIDNFL K VPK+ I++I+R GEVRVNKKR+K YKL+ Sbjct: 2 QNKQIQHIDIDESSEDQRIDNFLFKTFKDVPKNHIFKIIRNGEVRVNKKRVKTLYKLKIN 61 Query: 64 DEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV 123 D VRIPP+ E++E+ S + + I+YED+ +LV+NKPSG AVHGGSG+ FG+ Sbjct: 62 DVVRIPPIEFIEKKEKKPSDNFKP------HIIYEDEWLLVVNKPSGLAVHGGSGIDFGL 115 Query: 124 IEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 IE +R ++PE +FLELVHR+D++TSGV+++AKKRSALRS+ E R K ++K+YL V+G Sbjct: 116 IEHMRHIKPEYKFLELVHRIDKNTSGVIVIAKKRSALRSMQELFRNKKIKKNYLVAVKGN 175 Query: 184 WQSHVKSVQAPLLKNILQSGE--RIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 W S K V L K G +V GK S++ F + ++ +L+ +TGRT Sbjct: 176 WDSKKKEVSLRLEKKQTSEGHHVNVVEDPLRGKLSKSIFYLVKQMQKQSLLSAQIITGRT 235 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRV + G P+ DD+YGD +++L +GL R+FLHA L F HP T E + + Sbjct: 236 HQIRVQLAFLGFPVLGDDKYGDFALNKKL--QSSGLKRMFLHAHKLSFFHPFTEEKVELT 293 Query: 302 APMDEGLKRCLQK 314 A + L++ + Sbjct: 294 ADLPIELRKFFDE 306 >UniRef50_P59838 Ribosomal large subunit pseudouridine synthase D n=3 Tax=Gammaproteobacteria RepID=RLUD_BLOFL Length = 321 Score = 336 bits (864), Expect = 5e-91, Method: Composition-based stats. Identities = 88/324 (27%), Positives = 149/324 (45%), Gaps = 19/324 (5%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEV 66 +K + + ++G R+D L L +S I + +V VN + P K+ G+ + Sbjct: 4 IKPMIVQVHQSGYRLDYILSKLLPQYSRSQIKHWILNKKVVVNNQVSTLPRKKVVYGELI 63 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 I + + + I+YED+ ILV+NK S VH G G G + Sbjct: 64 EIKYI----NNNDICKSEDIVPQNIPLNIIYEDNDILVINKASNMVVHPGIGHYQGTVLN 119 Query: 127 LRALRPEA-----RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 R + + +V RLD+DT+G++++AK SA +L + + + K+Y A+V Sbjct: 120 ALLYRYPSILKISKQAGIVQRLDKDTTGLMIIAKTVSAYDNLLRSFKLRKVVKEYDAIVY 179 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 G++ S+ V P+ ++ + + V GK + T + V E + + VR + TGRT Sbjct: 180 GKFTSNAGVVNQPMRRHFAKRT--FMSVHYTGKSAVTYYSVVEEFKAHSRVRINLKTGRT 237 Query: 242 HQIRVHTQYAGHPIAFDDRYGD-------REFDRQLTEAGTGLNRLFLHAAALKFTHPGT 294 HQIRVH Y HP+ D +Y ++ +L NR LHA L+ HP T Sbjct: 238 HQIRVHMAYINHPLVGDQKYKGNFSVFDIKKMSDELNNYLLDFNRQALHACTLQLLHPIT 297 Query: 295 GEVMRIEAPMDEGLKRCLQKLRNA 318 M+ AP+ + + + + L+ Sbjct: 298 QVQMKWNAPLPQDILQLIAILKKY 321 >UniRef50_B7GLK3 Pseudouridine synthase n=11 Tax=Bacillaceae RepID=B7GLK3_ANOFW Length = 292 Score = 336 bits (862), Expect = 9e-91, Method: Composition-based stats. Identities = 90/307 (29%), Positives = 143/307 (46%), Gaps = 25/307 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRIL-RKGEVRVNKKRIKPEYKLEAGDEVRIP 69 +T + G + FL+ Q + K+ + I + G + VN + Y L+AGDEV + Sbjct: 6 WIVTQQQDGMLVREFLKQQ--HISKTALTDIKFQGGRIEVNDVPVTVRYVLKAGDEVCVS 63 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 + P + I+YEDD+++V+NKP + G + Sbjct: 64 FPPEQKGANMVAEP-------IPLAIVYEDDYVIVINKPPHMSTIPSREHPHGTLANALL 116 Query: 130 LRPEARF----LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 E + + +V RLDRDTSG++LVAK R L EQ ++ +++ Y A+ G Sbjct: 117 HHYEQQQLQTTVHVVTRLDRDTSGLVLVAKHRHVHHLLSEQQKQGRVKRRYEAVCHGYVI 176 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245 V ++ AP+ + ER VR+ +G+ + T ++V ++ T V TGRTHQIR Sbjct: 177 QLVGTIDAPIGRKGDSIIEREVRL--DGQRAVTHYEVLQQKNEMTHVSIQLETGRTHQIR 234 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMD 305 VH + GHP+ DD YG ++R LH+ L F HP + M AP+ Sbjct: 235 VHFSHIGHPLVGDDLYGGLREH---------IDRQALHSCELTFFHPFFEKTMTFHAPLP 285 Query: 306 EGLKRCL 312 + + R L Sbjct: 286 DDIARLL 292 >UniRef50_Q2SK59 Pseudouridine synthase n=3 Tax=Gammaproteobacteria RepID=Q2SK59_HAHCH Length = 315 Score = 335 bits (861), Expect = 1e-90, Method: Composition-based stats. Identities = 158/299 (52%), Positives = 206/299 (68%), Gaps = 3/299 (1%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 ++V I + GQR+DNFL +LKGVPK IY+I+RKGEVR+NK R KPE KL+ GD+VRI Sbjct: 13 RVVTIDSGSDGQRLDNFLVRELKGVPKGKIYKIIRKGEVRINKGRCKPETKLKDGDQVRI 72 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 PP+RV+E + + ++ L+E+D +L++NKP G AVHGGSG+SFGVIE LR Sbjct: 73 PPIRVSEGDSLEPVIPAGLIELVSQSTLFENDELLIINKPCGVAVHGGSGVSFGVIEILR 132 Query: 129 ALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHV 188 A R + RFLEL HRLDRDTSGVL++AKKR AL H+ L+ ++K Y A V G+W H Sbjct: 133 AARQDIRFLELAHRLDRDTSGVLVLAKKRRALVQFHDMLKTGRVEKIYHAWVCGKWPKHK 192 Query: 189 KSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHT 248 + APL KN+L+SGER+V VS++GKPSETRF+V A TLV P+TGRTHQIRVH Sbjct: 193 SVITAPLKKNVLRSGERMVNVSEDGKPSETRFRVLYSGAGRTLVEAQPITGRTHQIRVHA 252 Query: 249 QYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEG 307 ++AGHPI DD+Y D E +R + G+ RL LHA +L+ + P E +I DE Sbjct: 253 KFAGHPIIGDDKYCDSETNRVYRDM--GVKRLCLHAYSLRMSWPDRPEQ-KIVCEWDED 308 >UniRef50_Q492Q1 Pseudouridine synthase n=2 Tax=Candidatus Blochmannia RepID=Q492Q1_BLOPB Length = 338 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 170/320 (53%), Positives = 225/320 (70%), Gaps = 6/320 (1%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 MK +V + I+++ +GQRIDNFL T LK PKSMIY+I+R G +R+NKKRIK +YKL Sbjct: 1 MKEHDINVHFIRISSNSSGQRIDNFLYTYLKVAPKSMIYKIIRTGAIRINKKRIKFQYKL 60 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 + GD +RIPP+R + + ++++VA L ++I+YEDD++L LNKP+G A HGGSGL Sbjct: 61 QIGDLLRIPPIRGIKINRFNMK-YMEEVAFLQNIIIYEDDYLLALNKPTGVAAHGGSGLK 119 Query: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 FGVIEGLRALRP+A+FLELVHRLDR+TSGVLLVAK+R+AL LHEQLR + M+K+YLALV Sbjct: 120 FGVIEGLRALRPKAQFLELVHRLDRETSGVLLVAKRRTALVYLHEQLRLQNMKKEYLALV 179 Query: 181 RGQWQSHVKSVQAPLLKNIL--QSGERIVRVSQEGKPSETRFKVEERYAF-ATLVRCSPV 237 G+W +++ V PL K S + S+ GK S T F+++E + AT + P+ Sbjct: 180 HGRWNVNLQIVSVPLFKKNTLLNSSRVVYIDSENGKFSTTHFQIKEYFDNVATFLAIKPI 239 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQIRVHTQYA HPI D+RYGD + + + G NRLFLHA+ L+F HP T + Sbjct: 240 TGRTHQIRVHTQYASHPIVGDNRYGDYQSNTRFKR--FGFNRLFLHASILRFIHPKTKKK 297 Query: 298 MRIEAPMDEGLKRCLQKLRN 317 I AP+ + CL LRN Sbjct: 298 FHIHAPLGQSFHNCLFFLRN 317 >UniRef50_C4XSN0 Ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XSN0_DESMR Length = 554 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 98/314 (31%), Positives = 148/314 (47%), Gaps = 24/314 (7%) Query: 16 DEAGQRIDNFLRTQL--KGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPVR 72 D AG R+D F +L + + ++ + + G V+ + KP KL G+ + + Sbjct: 22 DAAGTRLDAFWSARLASEDISRAKVRAAIEAGLALVDGEICRKPGLKLRGGEALTLRLPE 81 Query: 73 VAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRALR 131 P K +LY D +LVLNKP+G +H S G + L Sbjct: 82 T---------PSEAKAEDGELKLLYLDGDVLVLNKPAGLTIHPASSQPDGTLVNRLLHHF 132 Query: 132 PEAR-----FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 P+ R +VHRLD+DTSG+LLVA+ SA +L E+ + K YLALV G+ + Sbjct: 133 PDMRAMAGDRPGIVHRLDKDTSGLLLVAQTESARLALAADFAERRVAKTYLALVHGRPER 192 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF--ATLVRCSPVTGRTHQI 244 ++ P+ ++ + V V++ G+ +++ +K+ A+L+ + TGRTHQI Sbjct: 193 SDGVIELPVGRDPKHPTKMAV-VAKGGREAKSSWKLAWTAPDGTASLLEVAIATGRTHQI 251 Query: 245 RVHTQYAGHPIAFDDRYGDR---EFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 RVH GHPI D YG R ++ R+ R LHA L F+HPGTGE + Sbjct: 252 RVHMAAMGHPIVGDAVYGARQHSDWTRRGGAMARLAKRQMLHAWKLAFSHPGTGEELSFC 311 Query: 302 APMDEGLKRCLQKL 315 P R L L Sbjct: 312 QPPPADFWRLLLML 325 >UniRef50_Q2NIN6 Pseudouridine synthase n=4 Tax=Candidatus Phytoplasma RepID=Q2NIN6_AYWBP Length = 306 Score = 334 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 90/317 (28%), Positives = 149/317 (47%), Gaps = 24/317 (7%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 K I+A EA QR+D+FL + + KS +++ +V VN K K Y L+ D + + Sbjct: 5 KEFLISASEAFQRLDHFLSAHI-NLNKSQCQKLILAQQVLVNTKSSKKSYLLKPQDLITV 63 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 + E S +LQ L I+YED ++ V+NKP+ VH + Sbjct: 64 IIPQTHE------SINLQTPQNLNLDIIYEDPYLAVINKPANLVVHPSLSFQKTTLVNGL 117 Query: 129 AL------RPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 + + +VHRLD++T+G+L+VAK L +++ + K Y AL+ G Sbjct: 118 LHQFNTLSHIDTQRPGIVHRLDKNTTGLLIVAKTNDVSDKLQIAFQQRKITKIYWALIEG 177 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 + ++ P+ +N + V +GK + T FK +R++ +L+ C+ TGRTH Sbjct: 178 -FLEDKGIIKLPIGRNNHNRLKMQVM--PDGKTAVTHFKTLQRFSHFSLMECNLETGRTH 234 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 Q+R H + HPI D Y L FLH+ LKF HP T + + +EA Sbjct: 235 QLRAHFSFLKHPIVGDLLYDSSHHITPL--------GQFLHSKILKFNHPITNQNLILEA 286 Query: 303 PMDEGLKRCLQKLRNAR 319 P+ ++ L+ ++ Sbjct: 287 PLPTNFEKLLKTFTDSN 303 >UniRef50_Q1MQ60 Pseudouridylate synthases, 23S RNA-specific n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQ60_LAWIP Length = 541 Score = 334 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 83/309 (26%), Positives = 132/309 (42%), Gaps = 28/309 (9%) Query: 21 RIDNFLRTQL--KGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPVRVAERE 77 R+D FL L GV + + +++ G +++ K P +L+ G + I V Sbjct: 17 RLDQFLYNNLCTHGVSRERLKKVIVSGGCKIDDKVCFSPSTRLKVGMHIFIQLPEVV--- 73 Query: 78 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRALRP---- 132 IL+ D+H+ ++NKP G VH + L P Sbjct: 74 ------SALLPEEGFLEILFSDEHLAIINKPPGLTVHPAPSCQESTLVHRLLKYFPKLIE 127 Query: 133 -EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSV 191 +VHR+D+DTSG+L +A L + ++ + K+YLALV G + Sbjct: 128 QGGLRPGIVHRIDKDTSGLLCIALTEDTRLKLSKIFLDRKINKEYLALVHGVPS-MEGYI 186 Query: 192 QAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF--ATLVRCSPVTGRTHQIRVHTQ 249 PL ++ + V V+ +GKP+ T ++V R +++ + TGRTHQIRVH + Sbjct: 187 AVPLGRDP--KTKVKVAVNPKGKPAHTEWRVLHRGKNDVYSILALTIQTGRTHQIRVHMK 244 Query: 250 YAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLK 309 + GHP+ D Y ++ NR LHA L F HP TG+ M P + Sbjct: 245 HIGHPLVGDKLYAGGHVNKTFQ-----CNRQMLHAWKLSFEHPITGKKMNFLCPPPKDFL 299 Query: 310 RCLQKLRNA 318 + L Sbjct: 300 DTVSLLEQE 308 >UniRef50_A6GP31 Pseudouridine synthase n=1 Tax=Limnobacter sp. MED105 RepID=A6GP31_9BURK Length = 335 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 153/327 (46%), Positives = 206/327 (62%), Gaps = 14/327 (4%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 K ++ I QR+DNFL KGVPKS ++RI+R GEVR+N+KR + + KL Sbjct: 6 KPNPDRAVLLEIDEKHQDQRLDNFLCNVCKGVPKSHVFRIIRSGEVRINRKRAEAKTKLC 65 Query: 62 AGDEVRIPPVRVAEREEEA-------VSPHLQKVAALADVILYEDDHILVLNKPSGTAVH 114 GD VR+PP++V E+++ ++ AA IL+ED+H+LV+NKPSG AVH Sbjct: 66 VGDVVRVPPIKVVEKQDLDSLSLSAGLNKTQLLKAAADLPILFEDEHLLVVNKPSGMAVH 125 Query: 115 GGSGLSFGVIEGLRALRPE-ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQ 173 GGSG SFG+IE +RALR E + LELVHR+DR+TSG+L+++KKRSALR L EQLR + + Sbjct: 126 GGSGSSFGLIECIRALRAETHQDLELVHRIDRETSGILIISKKRSALRKLQEQLRARSWK 185 Query: 174 KDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEE----RYAFA 229 K Y LV G W ++ V PLLK E V V + G + T+FKV + Y+ Sbjct: 186 KYYKTLVLGHWPEALRQVDLPLLKTQSSEKEARVFVDESGDKACTKFKVIQCYKSSYSSF 245 Query: 230 TLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKF 289 TL++ +TGRTHQIRVHT PIA DDRYG+ E ++QL A GL R+FLHAA L+ Sbjct: 246 TLIQAQILTGRTHQIRVHTSANKFPIAGDDRYGNFEMNKQL--ARQGLKRMFLHAARLQL 303 Query: 290 THPGTGEVMRIEAPMDEGLKRCLQKLR 316 HP T E + +EAP+ L L+ L+ Sbjct: 304 VHPATNETIVLEAPLAPELDGFLKSLQ 330 >UniRef50_Q0F3G4 Pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G4_9PROT Length = 315 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 129/317 (40%), Positives = 177/317 (55%), Gaps = 8/317 (2%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 M + ++ I ADE G R+D L L +++I R++RKG VR+NKKR KPE + Sbjct: 1 MASSVAENGVLTIGADEDGSRLDRVLSRHLGAGHRALILRLIRKGNVRLNKKRCKPETHV 60 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALA-DVILYEDDHILVLNKPSGTAVHGGSGL 119 AGD+V +P E + +A +LYEDD +LV+NKP+G VHGGSG Sbjct: 61 AAGDQVFLPVSLREPDTMERAPVSASLLGKMASIPVLYEDDSLLVVNKPAGMVVHGGSGH 120 Query: 120 SFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 G+IE L+ R L L HRLDRDTSGVLL+AK ALR L E RE+ MQK Y AL Sbjct: 121 EAGLIEALKQSRG-LDDLRLAHRLDRDTSGVLLMAKHLDALRRLTESFRERDMQKTYFAL 179 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF----ATLVRCS 235 + G +H + + L K +++ GER+V S+EGK S T ++V Y +V + Sbjct: 180 IAGHPYAHAGRMSSNLAKGVVRGGERMVVDSEEGKASVTDYQVMIEYERHGFPYAMVALN 239 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTG 295 P +GRTHQ+RV Q+ GHPI D +YG++ G L LHA L+FTHP +G Sbjct: 240 PHSGRTHQLRVQLQHEGHPILGDGKYGEKAQLAAYK--SLGGKGLMLHAWRLRFTHPVSG 297 Query: 296 EVMRIEAPMDEGLKRCL 312 + + +AP + L Sbjct: 298 KSLECKAPWPDNWSALL 314 >UniRef50_D2L0S2 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L0S2_9DELT Length = 558 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 86/304 (28%), Positives = 130/304 (42%), Gaps = 24/304 (7%) Query: 19 GQRIDNFLRTQLKGV--PKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPVRVAE 75 G R+D F +L + ++ + + G V+ KP KL G+ + + +VA Sbjct: 23 GTRLDVFWSARLADLEVSRARVRAAIEGGLATVDGADCRKPGLKLRGGETLTLNLPQVA- 81 Query: 76 REEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLRALRPE- 133 A + +LY D + VL+KP G VH GL G + L P Sbjct: 82 --------SETVAEAGSLRVLYADKELAVLDKPPGLTVHPAPGLPEGTLVNRLLHHFPGL 133 Query: 134 ----ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVK 189 +VHRLD+DTSG+L+VA +L + + K YLALV G+ Sbjct: 134 REMAGERPGIVHRLDKDTSGLLMVALTEPVRLALAADFAARQVHKTYLALVHGRPDGKGG 193 Query: 190 SVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF--ATLVRCSPVTGRTHQIRVH 247 ++ P+ ++ + V + G+P+ +R++ A+L+ + TGRTHQIRVH Sbjct: 194 DIRLPIGRDPKYRTKMAV-PHKGGRPAHSRWRPVWTAPDGTASLLEVTIFTGRTHQIRVH 252 Query: 248 TQYAGHPIAFDDRYGDRE---FDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPM 304 GHPI D YG + + R+ +R LHA L FTHP E P Sbjct: 253 MAAIGHPIIGDAVYGPHQHAAWKRRGGAIARLASRQMLHAWKLSFTHPVLKEPRSFTCPP 312 Query: 305 DEGL 308 Sbjct: 313 PPDF 316 >UniRef50_C0QV86 Pseudouridine synthase n=2 Tax=Brachyspira RepID=C0QV86_BRAHW Length = 329 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 87/317 (27%), Positives = 155/317 (48%), Gaps = 24/317 (7%) Query: 3 TETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEA 62 + + K IT D+ G+R+D F+ +L + +S + L + VN K Y L+ Sbjct: 25 NNSDNKKSFIITEDDIGKRLDTFISEKL-NITRSQVKNYLTS--IIVNDAEKKLSYSLKL 81 Query: 63 GDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG 122 D + I + + + + +P + ILYED ++LV+NKP+G +VH G Sbjct: 82 NDNIIIDSDNIFKEKTDTANP---IPENIDLDILYEDKYLLVINKPAGMSVHCSPSEMSG 138 Query: 123 VIEGLRALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKD 175 + + ++HRLD+DTSG++++ K + + S+ EQ + + ++K Sbjct: 139 TLVNALLYKIKDFDFVGNKERAGIIHRLDKDTSGLMIIGKNANIVSSIQEQFKNRTIKKI 198 Query: 176 YLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCS 235 Y A+V G + + + P+ ++ + + VR ++GK + T KV +R+ TL+ + Sbjct: 199 YHAIVVGVLKDNYIEINLPIGRHHVYRKKMTVR--EDGKEALTHIKVLKRFNSHTLIEIN 256 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTG 295 TGRTHQIRVH+ Y G P+A D Y +++ + + L L A ++F HP T Sbjct: 257 LKTGRTHQIRVHSSYKGFPVAGDKIY---------SKSFSKYSGLMLVAKKIEFMHPITK 307 Query: 296 EVMRIEAPMDEGLKRCL 312 E++ E + L Sbjct: 308 ELLDFEIDYPDYFTNFL 324 >UniRef50_Q0F3G2 Possible pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G2_9PROT Length = 325 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 93/322 (28%), Positives = 146/322 (45%), Gaps = 25/322 (7%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI--KPEYKLEAGDEVRI 68 + ++ + +G+R+D L + +S I +LR+G VR + + ++ G+ + Sbjct: 13 ITVSTEASGKRLDAVLAAAC-ELSRSRIQTLLREGHVRTAGGSVISQASARVWEGERYLL 71 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 V P + + L IL+ED+H++VLNKP+G VH G G + Sbjct: 72 TLP--------PVKPLILEPEDLPLDILFEDEHLIVLNKPAGIVVHPSHGHDHGTLVHAL 123 Query: 129 ALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 +VHRLD+DTSG L++AK + L E E + + Y+A R Sbjct: 124 LHHCKTLPGINGVERPGIVHRLDKDTSGSLVIAKSEVVHQRLSEMFAEHNLNRQYIAWCR 183 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 G VK ++ P+ ++ Q + + V+ G+ S T VE + + +R + TGRT Sbjct: 184 GVPSWRVKCIELPIGRHPHQ--RQKMAVTDSGRESITDAAVEHIFGPFSQMRLTLHTGRT 241 Query: 242 HQIRVHTQYAGHPIAFDDRYG-----DREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGE 296 HQIRVH + P+ D Y RE A L+R LHA L+F HP +GE Sbjct: 242 HQIRVHMAHENLPVLGDPVYARSYHPGREIPEPARHAIATLSRQALHAELLEFDHPISGE 301 Query: 297 VMRIEAPMDEGLKRCLQKLRNA 318 M AP+ E L L + Sbjct: 302 PMSFRAPLPEDLTILHDALTKS 323 >UniRef50_D1U4S9 Pseudouridine synthase, RluA family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4S9_9DELT Length = 596 Score = 333 bits (855), Expect = 6e-90, Method: Composition-based stats. Identities = 84/323 (26%), Positives = 142/323 (43%), Gaps = 25/323 (7%) Query: 14 TADEAGQRIDNFLRTQL--KGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPP 70 + + G R+D F +L +GV + + + G V+ + + + ++KL + +RI Sbjct: 23 PSSDCGLRLDKFWARELADEGVSRGRVQEWIESGLALVDGEVVTRGKHKLAGRETLRIGD 82 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 VA ++ A + +++ED H+ V++K +G H G + Sbjct: 83 AGVAPSDDAA------QAVPGELEVVFEDAHVAVIDKRAGLTTHPAPGEPGPTLVNHLLH 136 Query: 131 R----------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 R + + +VHRLD+DTSG+++VA L + ++K YLA+V Sbjct: 137 RWPDVASDISGMDRQRPGIVHRLDKDTSGLMVVALTEGDRLRLAADFAGRRVRKVYLAVV 196 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF--ATLVRCSPVT 238 G+ ++ AP+ ++ Q V V++ G+ + + ++V A+LV T Sbjct: 197 LGRPAQPAGTIDAPMGRHPSQKTRMAV-VARGGREAVSDYRVLWTGPRGLASLVAVRIHT 255 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDR---EFDRQLTEAGTGLNRLFLHAAALKFTHPGTG 295 GRTHQIRVH + GHP+ D YG R E+ R+ R LHA L F HP T Sbjct: 256 GRTHQIRVHMAHIGHPLLGDSAYGPRENVEWSRRPDRLAGLAPRQMLHAFHLSFRHPATC 315 Query: 296 EVMRIEAPMDEGLKRCLQKLRNA 318 E + + L L Sbjct: 316 ERVTLWRRPPADFCTLLAALPRE 338 >UniRef50_A6NQQ9 Pseudouridine synthase n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQQ9_9BACE Length = 300 Score = 333 bits (854), Expect = 6e-90, Method: Composition-based stats. Identities = 95/315 (30%), Positives = 142/315 (45%), Gaps = 25/315 (7%) Query: 4 ETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIY--RILRKGEVRVNKKRIKPEYKLE 61 ++P + + D++G ++D LR L G+ ++I + L G + ++ R+ ++ Sbjct: 2 DSPRRLTLTVAPDQSGWKVDALLRGTL-GLSGTVIRRVKWLEDG-ILLDGVRVTVGDRVR 59 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 AG + + +P I+Y+D +LVLNK G AVH G G Sbjct: 60 AGQILSVVVGDTEVSGAIVPAPG-------PLDIVYQDQDVLVLNKAPGVAVHPGPGHYS 112 Query: 122 GVIEGLRALRPEARFL----ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 I + + VHRLDR TSG+LLVA A L EQL ++ YL Sbjct: 113 DTIGNFLMDYYRKQGILADFHPVHRLDRGTSGLLLVALHGHAQEVLKEQLHSPSFRRVYL 172 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPV 237 A+ G + AP+ + R VR +G+ + T ++ LVR Sbjct: 173 AVCEGAPNPPSGVIDAPIGRLEGSVLARTVR--PDGQRAVTHYRTLRTVNDRALVRLELE 230 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQIRVH + GHP+ D YG TE + + R LHAA L FTHP TG+ Sbjct: 231 TGRTHQIRVHMAHLGHPLTGDFLYG--------TEDQSLIPRPALHAAELSFTHPITGKT 282 Query: 298 MRIEAPMDEGLKRCL 312 M AP+ + + + Sbjct: 283 MAFTAPLPQDMAALV 297 >UniRef50_Q2IJ40 Pseudouridine synthase n=7 Tax=Cystobacterineae RepID=Q2IJ40_ANADE Length = 353 Score = 332 bits (853), Expect = 8e-90, Method: Composition-based stats. Identities = 97/334 (29%), Positives = 149/334 (44%), Gaps = 27/334 (8%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 ETP + + + + AG R+D L + ++ + R++ G V+V+ + K +L Sbjct: 17 AGETPDRRTLHVPPELAGARLDAALVRLAPELSRARVQRLVEAGRVQVDGRAAKASARLR 76 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 G+ + + E P L +L+ED ++VL+K G VH G Sbjct: 77 GGEAIAL--------EIPPPEPSGLVAQDLPLAVLHEDADLIVLDKAPGMVVHPARGTPH 128 Query: 122 GVIEGLRALR----------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG 171 + R L LVHRLD+DTSG L+VAK +AL +L Q + + Sbjct: 129 STVVNALLHRLGLPAAAGPDGALPRLGLVHRLDKDTSGCLVVAKTEAALAALQAQWKGRS 188 Query: 172 MQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA-FAT 230 ++K YLAL G + + P ++ R++ + + T ++V E + A+ Sbjct: 189 VEKVYLALCHGALAA-AGRLDTPYGRHPRDRLRFTGRLASS-RRAITEWRVREAFGPAAS 246 Query: 231 LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDRE------FDRQLTEAGTGLNRLFLHA 284 L + TGRTHQIRVH AGHP+ D YG D A + R LHA Sbjct: 247 LAEVTLHTGRTHQIRVHLSEAGHPLLGDAVYGGTRREARLAPDDPARRAAEAVGRQALHA 306 Query: 285 AALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNA 318 L HP TG + +EAP+ L+ L+ LR A Sbjct: 307 LRLGLDHPRTGRRLVVEAPVPADLRAALEILRAA 340 >UniRef50_Q5PAD0 Pseudouridine synthase n=5 Tax=Anaplasma RepID=Q5PAD0_ANAMM Length = 327 Score = 332 bits (853), Expect = 9e-90, Method: Composition-based stats. Identities = 89/324 (27%), Positives = 154/324 (47%), Gaps = 22/324 (6%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPE-YKLEAGDEV 66 V V +T ++ QRID + L + ++ ++ G+V ++ + I Y + GD Sbjct: 4 VHEVCVTKEDDQQRIDKLISCAL-EISRNRAQGLIAGGQVTISGRVINNNSYLTKTGDVY 62 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 I A ++ +SP+ + ++YED ++V++K AVH G+G+ I Sbjct: 63 TIV---TAVQKPSTLSPNY----DIDLKVVYEDHDVIVIDKDPYIAVHPGNGIEHHTITN 115 Query: 127 LRALRPE--------ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLA 178 R + +VHRLD+DTSG+++ AK +A L E+L +G +K+YLA Sbjct: 116 ALLARFGAGLQSVGSSSRPGIVHRLDKDTSGLMVAAKTENAYYRLSEELANQGFKKEYLA 175 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF-ATLVRCSPV 237 + G + + + + + GKP++T ++VE+ A+L+RC+ Sbjct: 176 VAWGIPCPKRGVIHTNI-RVKRSDITMMEAANSGGKPAKTEYEVEQELGEVASLIRCTLH 234 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYG---DREFDRQLTEAGTGLNRLFLHAAALKFTHPGT 294 TGRTHQIRVH + GH I D +YG + + R LHA+ L F HP T Sbjct: 235 TGRTHQIRVHMSHIGHSIVGDQKYGKNCKKCMRSGVPPDVKNFRRQALHASLLGFRHPST 294 Query: 295 GEVMRIEAPMDEGLKRCLQKLRNA 318 G+ + + + +++ + L A Sbjct: 295 GKYIEFTSKPADDIQQLISALERA 318 >UniRef50_A8MF48 Pseudouridine synthase n=12 Tax=Clostridiaceae RepID=A8MF48_ALKOO Length = 305 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 93/321 (28%), Positives = 155/321 (48%), Gaps = 24/321 (7%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 + + ++ I D+AG+ + L+ +L ++ R+ R + VN + +K + Sbjct: 5 EKQKENMIIYEAENDDAGKELKKILKNKL-DFSSRLLARVKRGKTIFVNGEYLKYHETIN 63 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 AGDE++I P+ + + +YED ++++NK G H Sbjct: 64 AGDEIKIVMEDE---------PNHFTLQDVPFEAVYEDVDLILVNKEPGIVTHPTKSHPD 114 Query: 122 GVIEGLRALRPEAR----FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 I AL +++ + V+RLD DTSG+L++AK A L EQ++E ++K Y+ Sbjct: 115 WTIANGAALYLKSKGIDCKVRFVNRLDMDTSGLLIIAKNAYAHHVLSEQMQEDRIEKKYI 174 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPV 237 A V G + ++AP+ + + S +R+V + G+ S T FKV ERY AT+V + Sbjct: 175 AFVWGVIKEDEGRIEAPIYRTTMDSIKRVV--DERGQESITEFKVLERYKNATMVEVKLL 232 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQIRVH ++ GHP+ D YG E ++R LHA L+F P Sbjct: 233 TGRTHQIRVHMEHLGHPLIGDTLYG--------KEDAELIDRQALHAEYLRFWQPRFKRA 284 Query: 298 MRIEAPMDEGLKRCLQKLRNA 318 + ++A + L KL+ Sbjct: 285 IEVKADLPADLLSLRDKLKEM 305 >UniRef50_Q8K9E9 Ribosomal large subunit pseudouridine synthase D n=4 Tax=Buchnera aphidicola RepID=RLUD_BUCAP Length = 315 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 84/312 (26%), Positives = 143/312 (45%), Gaps = 22/312 (7%) Query: 17 EAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRIPPVRVAE 75 +G+R+D L +S + + + V +N K P+ K+ G+++ I Sbjct: 15 FSGKRLDQILSKLFMQYSRSCLKKWIIMNNVYINGKIENQPDKKILGGEKITIY------ 68 Query: 76 REEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEA- 134 + +A +YED +IL++NKP G VH G+G G I R Sbjct: 69 --STDEKLPINLPQNIALNTIYEDSNILIINKPPGLVVHPGAGNQDGTILNALLYRYTNI 126 Query: 135 ---RFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSV 191 ++HRLD+DTSG++++AK + L L+++ + + Y +++G S V Sbjct: 127 SSIPRCGIIHRLDKDTSGLMVIAKTIFSYNKLVTLLKKRKIIRKYQGIIKGNMISG-GIV 185 Query: 192 QAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYA 251 P++++ + + GK S T +K+ R+ F T V TGRTHQIRVH + Sbjct: 186 NYPIMRHPFKRI--CMTTDSLGKKSITHYKIINRFKFHTHVSFRLETGRTHQIRVHMLHI 243 Query: 252 GHPIAFDDRYGDREFDRQLTEAGTGLN------RLFLHAAALKFTHPGTGEVMRIEAPMD 305 G+P+ D YG ++ + + R LHA ++F HP T +VM A + Sbjct: 244 GYPLLGDPLYGGIDYGCNYFQENRNIYRKFNLFRQALHADYIEFIHPFTQKVMSWSASLP 303 Query: 306 EGLKRCLQKLRN 317 + +K L L+ Sbjct: 304 QDMKDILLYLKK 315 >UniRef50_B0U5V6 Pseudouridine synthase n=7 Tax=Xylella fastidiosa RepID=B0U5V6_XYLFM Length = 330 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 156/320 (48%), Positives = 215/320 (67%), Gaps = 11/320 (3%) Query: 4 ETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAG 63 E SV+IV + A+ +GQR+DNFL ++LKGVP+S+IY+++R G+VRVN R+K E KL+ G Sbjct: 14 ECFSVRIVVVPAEHSGQRLDNFLLSKLKGVPRSLIYKLVRSGQVRVNGGRVKAERKLDGG 73 Query: 64 DEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV 123 DEVR+PP+R+ ++ V+P +A + I++ED +L LNKPSG A HGGSG+S+GV Sbjct: 74 DEVRLPPLRLI-QDRAIVAPSAAFLARMEAAIVFEDARLLALNKPSGMASHGGSGVSYGV 132 Query: 124 IEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLRE--------KGMQKD 175 IE +R LRP+ LELVHRLDRDTSG+L++AKKR+AL L +RE +G+ K Sbjct: 133 IEAMRILRPKQE-LELVHRLDRDTSGLLIMAKKRAALIELQALMREASVNGKEGRGIAKR 191 Query: 176 YLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCS 235 YL L+ G+ + V SV APL N+ GER VRV +GKPS++RF++ ER + Sbjct: 192 YLTLLSGRMPNGVMSVDAPLHINLRHGGERHVRVHHDGKPSKSRFRLLERRGGQSYCEVL 251 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTG 295 TGRTHQIRVH Q+ GHP+ DD+YGD+E +R+L + GL RLFLHA +L+F Sbjct: 252 IETGRTHQIRVHAQHLGHPVTGDDKYGDQEVNRKLRDQI-GLQRLFLHAVSLEFALDAGS 310 Query: 296 EVMRIEAPMDEGLKRCLQKL 315 + AP+ E L L +L Sbjct: 311 TPYVLNAPLAEDLVAALDRL 330 >UniRef50_C0GNZ6 Pseudouridine synthase, RluA family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GNZ6_9DELT Length = 535 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 86/320 (26%), Positives = 140/320 (43%), Gaps = 26/320 (8%) Query: 11 VAITADEAGQRIDNFLRTQLK--GVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVR 67 + +AG R+D + + +S + +RKG + ++ KP +KL AG V+ Sbjct: 7 FTVQESQAGSRLDRLVMQNIPRPAPSRSRVQDWIRKGNILLDGTVCLKPAHKLSAGQTVQ 66 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 + E + A I+Y D ++VLNKP+G +VH S + Sbjct: 67 VLAREENED---------LEPVAGKLDIVYMDREMVVLNKPAGLSVHPSSSDPAPTLVHY 117 Query: 128 RALRP-------EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 + + +VHRLD+DT+G+++ A + A L Q + + K YLALV Sbjct: 118 LLYACPGLRLMTDRQRPGIVHRLDKDTTGLMVAALNQEAKEDLAGQFAGRRVHKTYLALV 177 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF--ATLVRCSPVT 238 G + + PL ++ V S+EG+ + T +KV +R +LV+ T Sbjct: 178 CGALKQDEGIINVPLARDQQSRAR--VAPSREGRSARTAYKVLKRDPSGLWSLVQVQIFT 235 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGT---GLNRLFLHAAALKFTHPGTG 295 GRTHQIRVH + HP+ D YG ++DR + R LH++ L HP + Sbjct: 236 GRTHQIRVHFSHLNHPVLGDRIYGGTDWDRFGWKKRFLSRLAKRQLLHSSCLGIMHPVSR 295 Query: 296 EVMRIEAPMDEGLKRCLQKL 315 + + + R L L Sbjct: 296 QWLEFISRPPRDFIRTLLWL 315 >UniRef50_C6CWL6 Pseudouridine synthase n=2 Tax=Paenibacillus RepID=C6CWL6_PAESJ Length = 316 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 101/315 (32%), Positives = 141/315 (44%), Gaps = 20/315 (6%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKG-EVRVNKKRIKPEYKLEAGDEVRIP 69 V + AD AG+ + L +L GV +S++ R+ + VN R K+ GD V I Sbjct: 15 VEVGADMAGKDVRTVLERKL-GVSRSLLSRLKLTEYGITVNGVRAYTTAKVTEGDSVAIR 73 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 + L I++EDD++LV+NKP+G VH G + Sbjct: 74 MEEEISEDI--------LPQDLPLSIVFEDDYLLVVNKPAGIIVHPTKGHYTNTLANGIV 125 Query: 130 LR----PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 E VHRLD DTSG++++AK + L EQL+ + K Y A V G Sbjct: 126 HHWQVRGERVRFRPVHRLDEDTSGLVVIAKNPYIHQQLSEQLQAGTIMKIYCAYVYGTPS 185 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF--ATLVRCSPVTGRTHQ 243 +V AP+ +N RIV + EG PS T +K + A+ VR TGRTHQ Sbjct: 186 PADGTVGAPIDRNPEDPHVRIV--TPEGYPSVTHYKTAAVFGGGQASKVRLKLETGRTHQ 243 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH ++ G P+ D YG + ++ E T R LHA L THP T E A Sbjct: 244 IRVHMKHIGCPLIGDGMYGLQT--GKVDEWETAAGRQALHAETLGLTHPMTKEWSEWTAA 301 Query: 304 MDEGLKRCLQKLRNA 318 + L + LR Sbjct: 302 LPPDLVQLELALREC 316 >UniRef50_D1AV01 Pseudouridine synthase n=2 Tax=Bacteria RepID=D1AV01_STRM9 Length = 297 Score = 331 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 83/306 (27%), Positives = 135/306 (44%), Gaps = 30/306 (9%) Query: 20 QRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEE 79 +RID +L +L +S I +++ + VN K+ K YK+ GDE+ I + E + Sbjct: 11 ERIDIYLSKKLDE-TRSRIQELIKSNNILVNGKKTKASYKVNFGDEIFIDIPLLKEVDII 69 Query: 80 AVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR-------P 132 + +YED ++ ++NK +G VH G + + Sbjct: 70 PQDIDIDI--------VYEDKYLAIINKYAGMVVHPSKGHEEDTLVNAIMYKIKDLSGIN 121 Query: 133 EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQ 192 +VHRLD++TSG++++AK L E + K ++K Y A+V+G+ ++ Sbjct: 122 GDLRPGIVHRLDKNTSGLIIIAKDDKTHFKLSEMFKNKEIKKIYYAIVKGKVNKKSGRIE 181 Query: 193 APLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAG 252 + +N + V GK + T F+V + +L++ TGRTHQIRVH + Sbjct: 182 TMIGRNPNDRKKMAVV--DNGKLAITNFEVIDSNEKFSLLKVDLETGRTHQIRVHLSHFF 239 Query: 253 HPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCL 312 PI D YG ++ +R LHA L F HP T E + + R L Sbjct: 240 FPILGDSVYGRKDE----------YDRQMLHAYMLNFIHPITLEKIDVIGNFHSDFLRAL 289 Query: 313 Q--KLR 316 KLR Sbjct: 290 SNTKLR 295 >UniRef50_C1ZB48 Pseudouridine synthase, RluA family n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZB48_PLALI Length = 325 Score = 331 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 92/324 (28%), Positives = 138/324 (42%), Gaps = 24/324 (7%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 K V + AG R+D+FL + I R++ G V ++ + ++ G +V I Sbjct: 6 KTVTVEKYLAGVRVDSFLVKHFRSYTSWRILRMVAAGLVTIDGQVAATTQRVHPGQQVTI 65 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 + IL+EDD +LV+NKP+G H + G + Sbjct: 66 QLTEPPD--------LFVPPEPTPLEILFEDDSLLVINKPAGLIAHPTGEIPDGTLINAV 117 Query: 129 ALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 P +VHRLDRDTSG + + K+ + R L Q + + K YLALV Sbjct: 118 QHYLDKQSTHPGLERPGIVHRLDRDTSGAMAICKEHLSHRLLSIQFQLGRISKSYLALVE 177 Query: 182 GQWQSHVKSVQAPLLKNIL--QSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTG 239 G + P+ + + + E + S+T +V ER+ TLV P TG Sbjct: 178 GVLTDDQLVIDLPIGRAPGCSSALMSCRADALEAQASKTSLRVVERFPQHTLVEAKPRTG 237 Query: 240 RTHQIRVHTQYAGHPIAFDDRY--GDREFDRQLTEAGT-----GLNRLFLHAAALKFTHP 292 R HQIR+H G PI D+ Y G E+ +NR LHAA L F HP Sbjct: 238 RMHQIRIHLATIGFPIVGDEFYLKGGEIRPLVWPESERVQVSLLINRQALHAACLSFAHP 297 Query: 293 GTGEVMRIEAPMDEGLKRCLQKLR 316 T E +AP+ + L++ ++ R Sbjct: 298 LTNEWQDFQAPLPDDLRQAIELAR 321 >UniRef50_A9IIW7 Pseudouridine synthase n=5 Tax=Bordetella RepID=A9IIW7_BORPD Length = 324 Score = 331 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 91/319 (28%), Positives = 135/319 (42%), Gaps = 24/319 (7%) Query: 6 PSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDE 65 + + + A R+D L L G +S + + G V+VN K + GD Sbjct: 19 DEPQFITVPAGTRADRLDKILAALLDGHSRSRLQGWIEAGWVQVNGAPAKVRQVVGPGDV 78 Query: 66 VRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI- 124 + + E P +A ++ E +V++KP+G H G+G G + Sbjct: 79 LAVWEQPAPESLAFTPEP-------IAFAVVAESPDWIVVDKPAGLVTHPGAGNWSGTLL 131 Query: 125 EGLRALRPEARFL---ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 GL PE + +VHRLD+DTSG+++VA+ A L QL+ + M ++Y+AL Sbjct: 132 NGLLHRYPELARVARAGIVHRLDKDTSGLMVVARNELAQTHLVRQLQARSMGREYIALAH 191 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY----AFATLVRCSPV 237 G W V P+ ++ V KP+ T + R T V C Sbjct: 192 G-WLPVAGKVDRPIGRDARVPVRMSVERPIAPKPAITHYAPLRRGRAPDGPVTEVACRLE 250 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQIRVH GHP+ D YG R G R LHA AL F PG G Sbjct: 251 TGRTHQIRVHLASLGHPLLADTLYGGR--------LTAGATRQMLHARALHFDDPGGGGP 302 Query: 298 MRIEAPMDEGLKRCLQKLR 316 A + +++ + L+ Sbjct: 303 AAFRADPPDDMRQVQEALQ 321 >UniRef50_C7LWM1 Pseudouridine synthase, RluA family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LWM1_DESBD Length = 526 Score = 330 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 91/325 (28%), Positives = 146/325 (44%), Gaps = 31/325 (9%) Query: 8 VKIVA--ITADEAGQRIDNFLRTQLK--GVPKSMIYRILRKGEVRVNKKRI-KPEYKLEA 62 ++ + + GQR+D F +T L+ GV +S + ++ G R+N + K +L Sbjct: 1 MQEYVEKVGVADVGQRLDVFWQTCLEEEGVGRSRVQAWIKDGRARINGQVCSKAATRLMP 60 Query: 63 GDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG 122 G + + P + + + D+ ++V+NK VH ++ Sbjct: 61 GQTLTLAP---------EYTDSSVVPDDGPLNVFFADEDLVVVNKTPAMTVHPAPSVAEP 111 Query: 123 VIEGLRALRP------EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDY 176 + A +VHRLD+DTSG++++A SA SL + + + K+Y Sbjct: 112 TLVHRVAHHFPALLSQSGERPGIVHRLDKDTSGLIVLALSESARLSLTQAFASREVYKEY 171 Query: 177 LALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF--ATLVRC 234 LALV G S +V L ++ V V + G+ +ETRF++ A A+LVR Sbjct: 172 LALVAGVPDS-SGTVSLALGRHPSIKTRMAV-VERGGRAAETRFELLWSAADRSASLVRV 229 Query: 235 SPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGT 294 +TGRTHQIRVH GHP+ D Y D+ + R LHA L+F HP + Sbjct: 230 RIMTGRTHQIRVHMAALGHPLLGDAVYADK-------QTAARAPRQMLHAWQLRFEHPRS 282 Query: 295 GEVMRIEAPMDEGLKRCLQKLRNAR 319 E M AP + + L++L R Sbjct: 283 FESMEFCAPPPDDFLQVLRELCRER 307 >UniRef50_Q2RQY9 Pseudouridine synthase n=3 Tax=Alphaproteobacteria RepID=Q2RQY9_RHORT Length = 330 Score = 330 bits (847), Expect = 5e-89, Method: Composition-based stats. Identities = 112/316 (35%), Positives = 164/316 (51%), Gaps = 11/316 (3%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 SV+ VA+T DE G R+D + + + + + ++LR G++RV+ KR+K +LEAG +V Sbjct: 2 SVETVAVTQDEDGSRLDRWFKRRYPALTHGRLEKLLRTGQIRVDGKRVKSGERLEAGQQV 61 Query: 67 RIPPVRVAEREEE------AVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 R+PP+ ++ AL IL+ED H++V+NK +G AV GG+G Sbjct: 62 RVPPLGDEAPSPSSSGHAVPRPAAEGEIRALRRAILHEDAHLIVINKEAGLAVQGGTGTP 121 Query: 121 FGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 + L +L LVHRLD+DTSGVL++A+ ++A R+L R + K Y A+V Sbjct: 122 HHLDGMLESLADGGETPRLVHRLDKDTSGVLVLARTQAAARALTSAFRSREALKVYWAIV 181 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFA-TLVRCSPVTG 239 G+ +++ L K GER+ +EGK + T F+V ++ A A V P TG Sbjct: 182 VGRPPMLQGTIKGALAKVAGGRGERMEINEEEGKRAVTDFRVVDQAAKACAWVELHPRTG 241 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RTHQ+RVH G PI D +YG E R+ LHA AL HP G V+ Sbjct: 242 RTHQLRVHCLEMGTPILGDGKYGGPG---AFLEGTELPKRMHLHARALALPHPAGG-VLE 297 Query: 300 IEAPMDEGLKRCLQKL 315 I AP L+ L Sbjct: 298 IIAPPPPHFVESLKTL 313 >UniRef50_P54604 Uncharacterized RNA pseudouridine synthase yhcT n=5 Tax=Bacillus RepID=YHCT_BACSU Length = 302 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 98/311 (31%), Positives = 151/311 (48%), Gaps = 26/311 (8%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 + I + GQ + + L+T LK K +I + +++VN + + ++ GD V I Sbjct: 9 EILINEKQDGQWLFSVLKTALK-ASKPVIQDWMSHQQIKVNHESVLNNMIVKKGDRVFI- 66 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 + E E +V P + IL+ED+H+L++NKP+G A H G + L A Sbjct: 67 --DLQESEASSVIPEYGE-----LDILFEDNHMLIINKPAGIATHPNEDGQTGTLANLIA 119 Query: 130 LR----PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 E + VHRLD+DTSG ++ AK R A L +QL +K +++ Y A+ G+ + Sbjct: 120 YHYQINGETCKVRHVHRLDQDTSGAIVFAKHRLAHAILDQQLEKKTLKRTYTAIAEGKLR 179 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF--ATLVRCSPVTGRTHQ 243 + ++ +P+ ++ R RVS G+ + T FKV A +LV TGRTHQ Sbjct: 180 TKKGTINSPIGRDRSHPTRR--RVSPGGQTAVTHFKVMASNAKERLSLVELELETGRTHQ 237 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH GHP+ D YG LNR LHA ++ HP T E++ EAP Sbjct: 238 IRVHLASLGHPLTGDSLYGGG---------SKLLNRQALHANKVQAVHPITDELIVAEAP 288 Query: 304 MDEGLKRCLQK 314 +K + Sbjct: 289 FPADMKNLCRT 299 >UniRef50_B5JUW4 Pseudouridine synthase n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUW4_9GAMM Length = 321 Score = 328 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 135/313 (43%), Positives = 184/313 (58%), Gaps = 12/313 (3%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 + + + + GQRIDNFL KGVP+S +YR+LRKGEVRVN R KP YKL++GD + Sbjct: 11 PTQKLTVPDEAVGQRIDNFLMGYWKGVPRSRVYRVLRKGEVRVNGGRKKPIYKLKSGDLL 70 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 R+PPVR+ + E V +A IL+ED+ +LV+NKPSG A H GSG+ FG+ E Sbjct: 71 RLPPVRIEPQGETEVP--AGAWREIAQRILFEDERLLVINKPSGMAAHAGSGVPFGIAEA 128 Query: 127 LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 + + + ELVHRLDR+TSG LL+AK RS L L + R++ K YLAL+ G Sbjct: 129 VHQHHCDGKRTELVHRLDRETSGCLLLAKGRSVLNVLQDSFRQRETHKQYLALLVGDL-K 187 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA----FATLVRCSPVTGRTH 242 + V L K L GE +V V + GK + + F+ Y TL R + TGRTH Sbjct: 188 GSRRVDLALQKTKLS-GEAMVVVDEAGKSALSDFEPLAHYPWNDRTLTLARVTIHTGRTH 246 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH + G P+ DD+YGD +R GL RLFLHA +++F P G+ + EA Sbjct: 247 QIRVHARALGLPLLGDDKYGDERLNRDAKRQ--GLKRLFLHAESIRF--PLEGQTLYFEA 302 Query: 303 PMDEGLKRCLQKL 315 P+D L++ + L Sbjct: 303 PLDADLEQFINAL 315 >UniRef50_C9M7B4 Pseudouridine synthase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M7B4_9BACT Length = 301 Score = 328 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 87/316 (27%), Positives = 145/316 (45%), Gaps = 24/316 (7%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKK-RIKPEYKLEAGDEVR 67 + + + +AG R+D +L QL + +S + R++ G V+ ++K + +GD Sbjct: 4 RRIVVEPSDAGNRLDLYLSGQL-ELSRSAVGRLISGG--LVSGVGKVKASRVVVSGDWFD 60 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG- 126 + +E + +Y DD + V+ K +G AVH G+G G + Sbjct: 61 VSMPEPSE--------ESVVPQDVPFRTVYADDWLAVVEKLAGIAVHPGAGRKDGTLVNG 112 Query: 127 LRALRPEAR----FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 L +VHRLD TSG+++VA+ A L + ++ ++K YLALV G Sbjct: 113 LVKTFGPLPGAGLRPGIVHRLDIGTSGLMVVARTPQAYLFLQREFSQRRVEKTYLALVHG 172 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 + ++ P+ ++ + VR +G+ + TR++ +L C TGRTH Sbjct: 173 WIPASQGTLDGPIGRSRYDRLKMAVRA--DGRRAVTRYRTLWTRGSLSLTACRIETGRTH 230 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH G + D YG ++ R E R+FLHA L F HP G M + Sbjct: 231 QIRVHMASIGCYLDGDRLYGPKDVSRHFLE-----GRVFLHAWRLSFHHPSDGRTMNFRS 285 Query: 303 PMDEGLKRCLQKLRNA 318 P+ + L L+K+R+ Sbjct: 286 PLPDELIGVLKKIRSE 301 >UniRef50_Q6MGX8 Pseudouridine synthase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MGX8_BDEBA Length = 319 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 86/324 (26%), Positives = 139/324 (42%), Gaps = 35/324 (10%) Query: 18 AGQRIDNFLRTQLKGV-PKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAER 76 +G R+D + + + +S +L V +N K K ++ D + I Sbjct: 2 SGLRLDKAMA-LIPEIGTRSRASHLLESNSVLLNGKPAKASVAIKENDLIEIQLPEPE-- 58 Query: 77 EEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR----- 131 P + L +L+ED+ ++V+NKP+G VH +G + + Sbjct: 59 ------PTELQPFDLKLDVLFEDEDLIVINKPAGLVVHPAAGHAHDTLVNALIHHTDDLS 112 Query: 132 --PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVK 189 +VHRLD++TSG++++AK A SL Q +E+ + Y A+ G ++ Sbjct: 113 MKFGEERPGIVHRLDKETSGIIVIAKNDKAHESLTSQFKERSTHRIYYAVCLGTARTLSG 172 Query: 190 SVQAPLLKNILQSGERIVRVSQE-------------GKPSETRFKVEERYAFATLVRCSP 236 SV++ L ++ + + + GK + T F+V +R + + ++ Sbjct: 173 SVRSFLARHPVDRKRYASVLGDDRKPLTDPNDDPGLGKWAVTHFEVLQRKSGMSYLKLKL 232 Query: 237 VTGRTHQIRVHTQYAGHPIAFDDRYGDREF-----DRQLTEAGTGLNRLFLHAAALKFTH 291 TGRTHQIRVH +G PIA D YG R E L R LHAA L FTH Sbjct: 233 ETGRTHQIRVHMSESGLPIAGDTLYGADRKIKSIEARATQEDLRTLPRFLLHAAELGFTH 292 Query: 292 PGTGEVMRIEAPMDEGLKRCLQKL 315 P T E M E + ++K Sbjct: 293 PRTKERMFFTKDWPEDVLVLIKKW 316 >UniRef50_B8J173 Pseudouridine synthase, RluA family n=2 Tax=Desulfovibrio RepID=B8J173_DESDA Length = 525 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 86/308 (27%), Positives = 136/308 (44%), Gaps = 27/308 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRIP 69 + ITA +AG+R+D L + + ++ + ++++ G V+ K P K+ G V + Sbjct: 6 LKITAGQAGKRLDRILGATVPELSRAALQKVVQAGCCTVDGLPEKRPAAKMRMGQTVTLD 65 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIE-GLR 128 P + +L++DDH++V NKP+G VH + L Sbjct: 66 LPE---------HPDRLQPEEGHLELLWQDDHLVVCNKPAGLTVHPCPSCPEQTLVQRLL 116 Query: 129 ALRP-----EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 P E + +VHRLD+DTSG+L+VA + +L E+ + K+YLALV G Sbjct: 117 GRFPQLSRLEGQRPGIVHRLDKDTSGLLVVALTEADCLALAAAFAERQVHKEYLALVSG- 175 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRV-SQEGKPSETRFKVEERYAF--ATLVRCSPVTGR 240 + PL ++ + V Q G+ + T ++ +L+ TGR Sbjct: 176 LPPLEGQCREPLGRHPTAKIKMAVVPEDQGGRNAFTEWRRLWNTDDGSVSLLAVRIHTGR 235 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH + G+P+ D Y + R LHA L FTHP +GE MR Sbjct: 236 THQIRVHMTHLGYPLLGDRLYAPKAVQNM-------APRQMLHAWRLGFTHPASGEDMRF 288 Query: 301 EAPMDEGL 308 P + Sbjct: 289 TCPPPHDM 296 >UniRef50_C8PW17 Pseudouridine synthase n=5 Tax=Moraxellaceae RepID=C8PW17_9GAMM Length = 365 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 135/324 (41%), Positives = 197/324 (60%), Gaps = 26/324 (8%) Query: 4 ETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAG 63 + V + +T + QR+DNFL +LKG+P+S +Y ++R E+RVN KR KP KL+ Sbjct: 52 DFAKVNYLTVTRQQHDQRVDNFLLGRLKGLPRSHVYNMIRSDEIRVNGKRCKPHDKLQRN 111 Query: 64 DEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV 123 D VRI P+++A RE+ +SP +L + I+YED+ ++VLNKPSG AVHGGSG SFGV Sbjct: 112 DVVRIAPIKLATREKPVISPDF--AQSLLERIVYEDEGLIVLNKPSGMAVHGGSGESFGV 169 Query: 124 IEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 IE +R + ++LELVHR+D+DTSG+L++AKKRS L++L E LREK +QK YL LV G Sbjct: 170 IEAMREATGK-KYLELVHRIDKDTSGLLMIAKKRSTLKTLQEHLREKTLQKTYLCLVVGW 228 Query: 184 WQSHVKSVQAPLLKN------ILQSGERIVRVS---QEGKPSETRFKVEERYA----FAT 230 S +++ PLLK +SGER V+V ++ KPS+T+ V +++ + Sbjct: 229 ISSETQTIDKPLLKYTLPATQEGKSGERRVKVDVKSEDSKPSQTQINVLQKFELNGQKVS 288 Query: 231 LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFT 290 L+ P+TGRTHQIRVH GHP+ DD+Y + + + + RL LHA L Sbjct: 289 LIEAKPLTGRTHQIRVHLASIGHPLLGDDKY-----NPNVAKGDKMVRRLCLHAYQLAIP 343 Query: 291 HPGTGEVMRIEAPMDEGLKRCLQK 314 E I A + ++ ++ Sbjct: 344 -----EYETITAELPVDMQNLIEN 362 >UniRef50_B8FTI5 Pseudouridine synthase n=2 Tax=Desulfitobacterium hafniense RepID=B8FTI5_DESHD Length = 302 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 93/310 (30%), Positives = 147/310 (47%), Gaps = 24/310 (7%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 + + G + + L + + +I + + V VN + +AG+ + + Sbjct: 9 TYTLQPQDDGVKYQDILYRRF-HFSRKLIQHLKQGERVWVNGAFTFLTTRGKAGETLSVQ 67 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG--- 126 + + L ILYEDD+ + +NKP+G VH G I Sbjct: 68 L--------QPPEINSIPGENLPLEILYEDDYFIAINKPAGQVVHPTPRYPRGTIGNAVV 119 Query: 127 -LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 + EAR +HR+DR+TSGV+++ K + A + + Q + K Y +V GQ Sbjct: 120 GYWLAKGEARPFRPIHRIDRNTSGVVVIGKNQFAHQQMAWQHAHGRIHKCYRGIVEGQVM 179 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245 +++AP+ +R +S EG P+ T +KV ERY A+L+ TGRTHQIR Sbjct: 180 EDQGTIKAPIALAPDSFIQRQ--ISPEGSPAVTLYKVLERYQDASLLEFILETGRTHQIR 237 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMD 305 VH Q+ GHP+ DD YG +NR LH++ +F HP TGE+ I+AP+ Sbjct: 238 VHCQHLGHPLLGDDLYGGN---------LARINRQALHSSIYEFNHPLTGELTTIQAPLP 288 Query: 306 EGLKRCLQKL 315 E L+R L++L Sbjct: 289 EDLQRLLREL 298 >UniRef50_B1ZYX0 Pseudouridine synthase n=4 Tax=Verrucomicrobia RepID=B1ZYX0_OPITP Length = 311 Score = 328 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 88/319 (27%), Positives = 147/319 (46%), Gaps = 23/319 (7%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 + + R D L + + + R G V I + + AGD + Sbjct: 4 QTYTVPDTIRHGRADKVLAAGVTEHSRVALQRSFDAGLVTRGGVPIGRDTTVTAGDTIEF 63 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGG-SGLSFGVIEGL 127 + P K + +L+ED H+L +NK +G VH G + ++ L Sbjct: 64 SFAE--------IKPTEIKAVDIPLTVLFEDKHMLAVNKAAGMVVHPGVATSEDTLVHAL 115 Query: 128 RALR-------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 A +VHRLD++T+GV++VAK +A R+L +Q + ++K+Y+ALV Sbjct: 116 LAHCAGSLSGIGGVERPGIVHRLDKETTGVIVVAKTDAAHRALADQFATRTLKKEYVALV 175 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFA-TLVRCSPVTG 239 G + S+ + ++ + V + G+P+ T +++ E + LVRC TG Sbjct: 176 AGVPRLLSGSIDRAIARHPVHRHRMTV--GEGGRPARTDWELVEAFGDIGALVRCRIFTG 233 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RTHQIRVH + GHPI D YG + R T+ R+ LHA L THP +G+ + Sbjct: 234 RTHQIRVHLKSLGHPILGDALYGWKPEPRLATQPA----RVMLHAEHLVLTHPISGKELD 289 Query: 300 IEAPMDEGLKRCLQKLRNA 318 + AP+ + +++LR + Sbjct: 290 LRAPLPKDFVAMIKELRRS 308 >UniRef50_Q0AFD5 Pseudouridine synthase n=3 Tax=Nitrosomonas RepID=Q0AFD5_NITEC Length = 354 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 145/313 (46%), Positives = 204/313 (65%), Gaps = 13/313 (4%) Query: 12 AITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPV 71 + GQRIDNFL LK +P+ IY++LR G+VRVN KRI Y+L D+VRIPPV Sbjct: 39 QVDETAEGQRIDNFLIKALKDIPRRHIYQLLRSGQVRVNSKRIDAGYRLLLNDKVRIPPV 98 Query: 72 RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR 131 + +P+ + LY+DD++LV+NKP+GTAVHGGSG+S+GVIE LR R Sbjct: 99 LKLAKPISRQAPYRAEQ----FDTLYQDDYLLVINKPAGTAVHGGSGISYGVIEQLRKQR 154 Query: 132 PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSV 191 P+ +FLELVHRLDR+TSGVLL+A+KR L LH+Q+RE ++K YL LVRG+W++ +++V Sbjct: 155 PDWKFLELVHRLDRETSGVLLLARKRQTLLELHKQIREGTVRKHYLTLVRGKWKNSLQNV 214 Query: 192 QAPLLKNILQSGERIVRV------SQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245 + PL K + GER V + + + + T F +++ + +L+ TGRTHQIR Sbjct: 215 RLPLYKYLTAEGERRVAIATGRNDHDKVQQAYTLFALQKNWEAFSLLDAELKTGRTHQIR 274 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTG---LNRLFLHAAALKFTHPGTGEVMRIEA 302 VH + G PIA DD+YGD +RQL + L R+FLHA+ THP TGE++R+EA Sbjct: 275 VHLAHLGFPIAGDDKYGDFGLNRQLQKDDGSGLVLKRMFLHASVFVCTHPVTGELLRLEA 334 Query: 303 PMDEGLKRCLQKL 315 P+ + L+ L+ L Sbjct: 335 PLPDELRVFLRNL 347 >UniRef50_D1N7N8 Pseudouridine synthase, RluA family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7N8_9BACT Length = 323 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 95/330 (28%), Positives = 142/330 (43%), Gaps = 39/330 (11%) Query: 5 TPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAG 63 I A +AG R+D L + G +S + R++R G V+ + ++ P Y + AG Sbjct: 2 NRKTLTFQIEAGDAGTRLDRCLSRLIPGESRSFLQRLIRDGLVKADGVALEVPRYPVRAG 61 Query: 64 DEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV 123 + + ILYEDD +LV++KP+G VH +G G Sbjct: 62 MSIAVELPEEESP--------EPAAEPFEFPILYEDDVMLVIDKPAGVVVHPAAGNPTGT 113 Query: 124 IEG-LRALRPE--------ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQK 174 + L P+ +VHRLD+DTSG L VAK +A L + +K Sbjct: 114 VVNALLGRYPQLAEQLACTTSRPGIVHRLDKDTSGCLAVAKTANAQFKLSTAFAGRETRK 173 Query: 175 DYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFAT---- 230 YLA+ RG + + ++ + + V V + GK + TR++V T Sbjct: 174 TYLAITRGVPIRRSGELSTLIGRHPVSRQKMAV-VERNGKLAITRYRV-----EYTGMLD 227 Query: 231 -----LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAA 285 ++ +TGRTHQIRVH G P+ D YG A G+ R LHA Sbjct: 228 GVEIGVLAVRILTGRTHQIRVHLASLGVPVLGDAVYGG------ARTAVAGVERQLLHAW 281 Query: 286 ALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 L HP TG M AP E ++R L+++ Sbjct: 282 KLCVPHPATGTPMEFTAPPPEDIRRILERI 311 >UniRef50_A1HR26 Pseudouridine synthase, RluA family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HR26_9FIRM Length = 301 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 91/315 (28%), Positives = 156/315 (49%), Gaps = 29/315 (9%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKP-EYKLEAGDEV 66 + + + + +FL++ G+ + + +I R+G+V +N +K + + +GDE+ Sbjct: 1 MFKLTVPFATTSTSVRDFLKSA--GISLTQLRKIKRQGQVLINGHPVKSFQTPVSSGDEI 58 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 I + I+YEDD +L++NKP+G VH S + + Sbjct: 59 SIDYGD----------DSCLTPMKMPLHIVYEDDFLLIVNKPAGLLVHPTSDPTEPTLAH 108 Query: 127 LRALRPEARFL----ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 ++ +HRLDR+TSG++ +AK +L KG+++ YLA+V G Sbjct: 109 GILYYLHSKGALGAFHPIHRLDRNTSGLVAIAKHPHIQHALSGG-GAKGLKRLYLAVVTG 167 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 S + + AP+ ++ +R+VR +G+P+ T ++V ++ A+LV +TGRTH Sbjct: 168 IPSSLMGRIDAPIGRHPNSIIKRVVR--SDGQPAITLYRVLSTFSMASLVELELLTGRTH 225 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH + GHP+ DD YG A + R LHAA+L F HP T +V+ + + Sbjct: 226 QIRVHLSHIGHPLLGDDLYGG---------ATDLIRRQALHAASLSFRHPATDKVLTLTS 276 Query: 303 PMDEGLKRCLQKLRN 317 P+ L +Q LR Sbjct: 277 PLPPDLADLIQLLRQ 291 >UniRef50_A5WCP4 Pseudouridine synthase n=15 Tax=Moraxellaceae RepID=A5WCP4_PSYWF Length = 364 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 143/317 (45%), Positives = 196/317 (61%), Gaps = 23/317 (7%) Query: 3 TETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEA 62 + V + +T ++ GQRIDNFL +LKG+P++ IY+++R EVR+N KR KP LE Sbjct: 57 KDFGQVNHLEVTRNQHGQRIDNFLLARLKGMPRAHIYKMIRSDEVRINNKRCKPYDNLER 116 Query: 63 GDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG 122 GD VRI PV++A RE +L + ++YED+ ++VLNKPSG AVHGGSGL FG Sbjct: 117 GDVVRIAPVKLATRE--KPVISEGFAKSLLERVVYEDEGLIVLNKPSGMAVHGGSGLDFG 174 Query: 123 VIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 VIE +R + ++LELVHR+D+DTSG+L++AKKRS L+ L E LREK +QK YL LV+G Sbjct: 175 VIEAMRDATSK-KYLELVHRIDKDTSGLLMIAKKRSTLKVLQEYLREKTIQKHYLCLVKG 233 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVS---QEGKPSETRFKVEERYA----FATLVRCS 235 Q + + APLL+ + +GER V+V E K S+T KV R+ +L+ Sbjct: 234 QPALNEFEIDAPLLRYTVANGERRVKVDKANPEAKLSQTTCKVLARFKMNGEPVSLIEAM 293 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTG 295 P TGRTHQIRVH Y GHPI DD+Y ++ +G+ RL LHA L Sbjct: 294 PHTGRTHQIRVHLAYLGHPILGDDKYNIKD--------TSGVRRLCLHAWQLDVP----- 340 Query: 296 EVMRIEAPMDEGLKRCL 312 E I+AP+ E ++ L Sbjct: 341 EYEVIKAPLPEDMQSLL 357 >UniRef50_UPI0001C42CC7 hypothetical protein BpOF4_01845 n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42CC7 Length = 322 Score = 327 bits (840), Expect = 3e-88, Method: Composition-based stats. Identities = 90/304 (29%), Positives = 137/304 (45%), Gaps = 24/304 (7%) Query: 17 EAGQRIDNFLRTQLKGVPKSMIYRIL-RKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAE 75 G + FLR + G+ K + I + G++ VN+K + + +GD V + + Sbjct: 36 NEGILLRTFLRDVI-GISKKSLADIKFKGGKILVNQKEVTVRTTIFSGDRVEVYVPPEPK 94 Query: 76 REEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEAR 135 E + + I YEDDH+LV+NKP G + E+ Sbjct: 95 NES-------LRPECIPLDIHYEDDHLLVINKPQGMPTIPSREHPSRTLANAVMGYYESH 147 Query: 136 FL----ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSV 191 + V+RLDRDTSG+L+VAK A L + R +++ YLAL G Q ++ Sbjct: 148 HIPFTFHAVNRLDRDTSGLLVVAKHGLAHDQLSKGQRAGKLKRYYLALAEGFVQPREGTI 207 Query: 192 QAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYA 251 AP+ + ER+V +G+ + T +KV + V + TGRTHQIRVH + Sbjct: 208 HAPIKRRPSSIIERMVAA--DGQEAITHYKVINDNQAYSEVEINLETGRTHQIRVHFAHL 265 Query: 252 GHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRC 311 GHP+ DD YG + L R LH ++ HP TG+ + AP+ + L Sbjct: 266 GHPLLGDDLYGG---------SIELLARQALHCQRVELIHPFTGKHLHFSAPLPKDLIEV 316 Query: 312 LQKL 315 KL Sbjct: 317 KDKL 320 >UniRef50_A6TSZ4 Pseudouridine synthase n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSZ4_ALKMQ Length = 308 Score = 327 bits (840), Expect = 3e-88, Method: Composition-based stats. Identities = 81/320 (25%), Positives = 145/320 (45%), Gaps = 24/320 (7%) Query: 3 TETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEA 62 + + + A++ Q + L+ +L + ++ ++ + + +N + K L Sbjct: 6 EQNERMITYEVEAEDDQQPLKETLKNRL-DLSSRLLTKLKKSKRILINGQYAKYHELLSE 64 Query: 63 GDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG 122 GD ++I A + E + ++YED ++V+NK G H Sbjct: 65 GDWIKIDMTEEASQFE---------PQEIPFNVVYEDIDVIVINKEPGIVSHPTKSHPKD 115 Query: 123 VIEGLRALRPEAR----FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLA 178 I E + + V+RLD DTSG+L++AK + +Q++ + K Y+A Sbjct: 116 TIANAAQNYLEKKGVACRIRFVNRLDMDTSGLLVIAKNPYTHHIMSQQMKANEITKKYVA 175 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVT 238 V+G ++ + + ++ ++ +R+V G+ S T+F V ERYA AT++ S +T Sbjct: 176 FVKGVVVANEGEIDGAIYRSSDETIKRVV--DDRGQQSLTKFTVLERYADATMLEVSLLT 233 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM 298 GRTHQIRVH + GHP+ D YG + R LHA+ L F P E + Sbjct: 234 GRTHQIRVHMESIGHPMLGDHLYG--------YVDTELIRRQALHASYLSFLQPRYKEKI 285 Query: 299 RIEAPMDEGLKRCLQKLRNA 318 + A + + L KL++ Sbjct: 286 EVRASLPKDLNELRNKLKDE 305 >UniRef50_Q14NK8 Probable pseudouridine synthase d protein n=1 Tax=Spiroplasma citri RepID=Q14NK8_SPICI Length = 306 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 87/318 (27%), Positives = 146/318 (45%), Gaps = 30/318 (9%) Query: 10 IVAITADEAGQRIDNFLRTQLKG----VPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDE 65 + +++ RID L K ++ I ++++ +V+VN + ++ Y + GD Sbjct: 5 TLIVSSSA---RIDKILTDYFKTNTTPFSRTKIQELIKQEKVQVNGQVVRANYVSQIGDH 61 Query: 66 VRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIE 125 V I E ++ + ILYED +++V++KP+ VH G + Sbjct: 62 VIIEFPSAKASELTPLA--------IPLTILYEDSYLMVIDKPNNLVVHPAPGHQNDTLV 113 Query: 126 GLRALRP-------EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLA 178 R + +VHR+DR T+G L++AK L +Q++ K +Q+ YLA Sbjct: 114 NALLARGVQWSTASGEQRPGIVHRIDRQTTGTLIIAKNDVVHHQLQQQIQTKQLQRRYLA 173 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVT 238 LV GQ + + AP+ ++ + +V + K + T V ER+ T + C + Sbjct: 174 LVHGQIIENRAKIDAPIGRDPNNRKKMVVTA-KNSKKALTNIVVIERFNDYTYIECELES 232 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM 298 GRTHQIR H +Y HPI D YG ++ +LHA L+F HP T E + Sbjct: 233 GRTHQIRAHLKYINHPIVGDPLYGTVADKKESF-------GQYLHAYQLRFIHPVTKESL 285 Query: 299 RIEAPMDEGLKRCLQKLR 316 I A + + ++ L LR Sbjct: 286 TITAALPQEFEQRLAILR 303 >UniRef50_A7H6D3 Pseudouridine synthase n=6 Tax=Cystobacterineae RepID=A7H6D3_ANADF Length = 339 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 109/316 (34%), Positives = 161/316 (50%), Gaps = 12/316 (3%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 + I+ D AGQR+D +R L+ VP S +Y++ R ++RVN R K E + AGD V Sbjct: 1 MLTFTISEDAAGQRLDKLVRKALRDVPLSHVYKMFRTRKIRVNGGRGKAEQLVAAGDVVV 60 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 I + P + A+ +L+ED +L ++KP+G A H G+G+S + + Sbjct: 61 IRGDEERLLARQEPEPGAR-AGAVTFGVLHEDADVLAVDKPAGLAAHPGTGISGATLVEM 119 Query: 128 RALR--------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREK-GMQKDYLA 178 P HRLDRDTSGV+LVAK R + L E + ++K YLA Sbjct: 120 ARAHLGTPADLPPTEFKPSPAHRLDRDTSGVVLVAKNRKTMVRLTELFTDGADVKKTYLA 179 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVT 238 LV+G+ ++ PL ++ Q+ + + TR+KV A+L+ + T Sbjct: 180 LVKGKMPREAGTIDLPLAEHE-QTARSKAARGVNLQEALTRWKVVSAMKEASLLAVTIET 238 Query: 239 GRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVM 298 GRTHQIR H + GHP+ D RYGD +R + GL R+FLHA L+ HP TG + Sbjct: 239 GRTHQIRRHLEAVGHPVLGDRRYGDFPTNRAARQ-RWGLRRMFLHAWRLELPHPTTGAPL 297 Query: 299 RIEAPMDEGLKRCLQK 314 R+EAP+ L L + Sbjct: 298 RLEAPLPGELLEALSR 313 >UniRef50_B0K860 Pseudouridine synthase n=11 Tax=Thermoanaerobacterales RepID=B0K860_THEP3 Length = 285 Score = 324 bits (832), Expect = 3e-87, Method: Composition-based stats. Identities = 88/309 (28%), Positives = 139/309 (44%), Gaps = 30/309 (9%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + + +E G ++NFLR KG K +I +GE+ VN + + L+ GD + + Sbjct: 3 LVVGENEKGVILENFLRN--KGFSKRLIRIYKWQGEILVNGIKSNVKRILQPGDVIDLIL 60 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 + L I YED+ IL++NKP+ VH G + A Sbjct: 61 PE---------NDSNIAPEKLDLDICYEDEEILIVNKPANMVVHPTKRYQSGTLANGVAW 111 Query: 131 RPEARFL----ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 + + L V+RLDR TSG+++ AK+ L K M K Y A+V G+ Sbjct: 112 YFKEKGLKALIRPVNRLDRGTSGLVVFAKRPFMQYYLQII---KPMTKLYFAVVEGKM-E 167 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 + P+ + ER+V S+EG + T +KV + +L++ TGRTHQIRV Sbjct: 168 GEGRIDLPISRKPQSGIERMV--SEEGDRAITNYKVVKSSKRFSLLKVKIETGRTHQIRV 225 Query: 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDE 306 H + GHPI D YG + + R LHA L F HP + + + +P+ + Sbjct: 226 HLSHIGHPIVGDTLYG---------SSDDYIKRQALHAYRLTFVHPLEEKSISVYSPLPQ 276 Query: 307 GLKRCLQKL 315 ++ L+ Sbjct: 277 DIQNLLKLF 285 >UniRef50_C8X1I9 Pseudouridine synthase, RluA family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1I9_DESRD Length = 547 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 100/318 (31%), Positives = 148/318 (46%), Gaps = 25/318 (7%) Query: 9 KIVAITADEAGQRIDNFLRTQLK--GVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDE 65 + A EAG+R+D FL +L GV +S I + +R+ VRV + + K+ G + Sbjct: 13 HAFVVEAGEAGKRLDKFLSDRLADLGVSRSRISQWIRQERVRVAGALCLQGKTKVLNGQK 72 Query: 66 VRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI- 124 V + + K ++Y D ++V+NK +G VH G+G G + Sbjct: 73 VVLLAPSLQ---------SGIKPEVGPVEVVYSDPDVVVVNKAAGVTVHPGTGCESGTLV 123 Query: 125 EGLRALRPE-----ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 L AL PE +VHRLD+DTSG+L VA SA +L + + K+YL L Sbjct: 124 HHLAALYPELARFDGERPGVVHRLDKDTSGLLTVALNESARLALTRSFARREVDKEYLTL 183 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF--ATLVRCSPV 237 V G+ ++ +V PL ++ V V + GK + TRFK +L+R + Sbjct: 184 VHGRPEA-EGTVDHPLGRDPQSKIRMAV-VPRGGKEALTRFKRVWTSPDGRVSLLRVRIL 241 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDR---EFDRQLTEAGTGLNRLFLHAAALKFTHPGT 294 TGRTHQIRVH Y G P+ D YG + F R LHA L F HP + Sbjct: 242 TGRTHQIRVHMAYLGFPLVGDALYGPQAQAAFQRSRPLLARLAKHHMLHAWRLAFPHPRS 301 Query: 295 GEVMRIEAPMDEGLKRCL 312 G ++ E M + + R + Sbjct: 302 GRMVCCEQAMPKAMWRLV 319 >UniRef50_C6LL16 Pseudouridine synthase n=3 Tax=Clostridiales RepID=C6LL16_9FIRM Length = 313 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 89/318 (27%), Positives = 139/318 (43%), Gaps = 27/318 (8%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILR-KGEVRVNKKRIKPEYK 59 M+ + I + G+ FLR KG + ++ + + +G + N RI + Sbjct: 1 MEKCMKRILNYQIEKEWEGESAAAFLRA--KGFSRHILTHLKQTEGGICRNGSRIWLSER 58 Query: 60 LEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGL 119 L GD + + + E P + I+YED+ +LV++KP+ VH Sbjct: 59 LHFGDVLTVTFLEERSSENIVPVP-------MKLDIVYEDEDLLVIDKPADMPVHPSIHN 111 Query: 120 SFGVIEGLRALRPEARFLELV----HRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKD 175 + A E+R V RLDRDT+G+LLVAK + L E + + + ++ Sbjct: 112 FDNTLANGLAYYYESRGEAFVYRCITRLDRDTTGLLLVAKNMLSGAFLAEMGKRREIHRE 171 Query: 176 YLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCS 235 YLA+V G+ +V AP+ + ER V Q G+ + T ++ E +LVR Sbjct: 172 YLAIVTGK-TEAEGTVDAPIARVEGSVLERCVDF-QRGERAVTHYRTLEYRDGYSLVRLK 229 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTG 295 TGRTHQIRVH +Y GHP+ D Y ++ LH+ L F HP TG Sbjct: 230 LETGRTHQIRVHMKYIGHPLTGDFLY---------NPDYRLMDHQALHSHYLAFRHPITG 280 Query: 296 EVMRIEAPMDEGLKRCLQ 313 E M + + + Sbjct: 281 ERMEFTSQPP--WQGLWE 296 >UniRef50_Q5ZT70 Pseudouridine synthase n=5 Tax=Legionella RepID=Q5ZT70_LEGPH Length = 317 Score = 323 bits (828), Expect = 6e-87, Method: Composition-based stats. Identities = 153/312 (49%), Positives = 207/312 (66%), Gaps = 7/312 (2%) Query: 6 PSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDE 65 V I ++E GQR+DN+L LKGVPKS IYRI+R GEVR+NKKR + +L+ GD Sbjct: 4 SEVSYKEIGSEENGQRLDNYLIRILKGVPKSHIYRIIRGGEVRINKKRAQASSRLQIGDS 63 Query: 66 VRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIE 125 +RIPP+R+ + +E VS +L K L D I++ED +LV+NKP+G AVHGGSGLS GVIE Sbjct: 64 IRIPPIRMTDSKEIFVSDNLAK--RLKDSIIFEDSSLLVINKPAGIAVHGGSGLSLGVIE 121 Query: 126 GLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 LR R + +LELVHRLDR+TSG LL+AKKRS LR++ L + +QK Y AL+ +W Sbjct: 122 ALRKTRHDLSYLELVHRLDRETSGCLLLAKKRSTLRAIQALLEAREVQKIYWALLTHRWD 181 Query: 186 -SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQI 244 ++ APL KN L+SGER+V V ++GK SET FK+ E Y A V SP TGRTHQI Sbjct: 182 GKKKITITAPLEKNTLKSGERVVSVQKDGKASETDFKLLENYHQACWVEASPKTGRTHQI 241 Query: 245 RVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPM 304 RVH+ Y GH I D++YG + + + + NRL+LHA +++F G + +A + Sbjct: 242 RVHSAYFGHVIVGDEKYGAKVGEVEGIDYQQ--NRLYLHARSIQFN--LNGVMHVFQADV 297 Query: 305 DEGLKRCLQKLR 316 D+G L++LR Sbjct: 298 DDGFGNTLKQLR 309 >UniRef50_C7MN62 Pseudouridine synthase n=8 Tax=Coriobacteriaceae RepID=C7MN62_CRYCD Length = 347 Score = 323 bits (828), Expect = 6e-87, Method: Composition-based stats. Identities = 80/332 (24%), Positives = 135/332 (40%), Gaps = 31/332 (9%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 M ++ + +T +AG R+D+ L +S + + G+V VN + Sbjct: 1 MASQFS----LIVTQADAGMRLDSLLAVSGAYPSRSAAVKQIEAGKVLVNGLARSKRSIV 56 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 GD + + +A P + + +ED ++ ++K +G VH G Sbjct: 57 APGDTIVYEEIPLATHIPLRGEP-------IPLDVRFEDRWMMAISKQAGLCVHPAPGHE 109 Query: 121 FGVIEGLR---------ALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG 171 G + A +VHRLD DTSG+++ AK + +L + +R+ Sbjct: 110 GGTLVNALIYAYGRDSLAHVQGDDRPGIVHRLDMDTSGLMMCAKDDTCGMALQDLVRDHK 169 Query: 172 MQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA---- 227 + + YL LV G + P+ + + + + T F V ER+ Sbjct: 170 VDRRYLTLVHGNIAFDTGQIDEPIGRVGDDRLRMKISYRPTARNALTTFTVLERFEAGRA 229 Query: 228 --FATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAA 285 TL+ C TGRTHQIRVH ++ GH D Y + L+R FLH+ Sbjct: 230 DNGYTLLECRLYTGRTHQIRVHMEFIGHCCVGDPLY-----RWGNEQVNLELSRQFLHSY 284 Query: 286 ALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 +L F HP TG+ + + + L L+ L + Sbjct: 285 SLSFNHPMTGDDIALVDGLPPDLFGALRSLED 316 >UniRef50_B3DV48 Pseudouridine synthase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DV48_METI4 Length = 325 Score = 323 bits (828), Expect = 7e-87, Method: Composition-based stats. Identities = 99/307 (32%), Positives = 153/307 (49%), Gaps = 24/307 (7%) Query: 15 ADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRV-NKKRIKPEYKLEAGDEVRIPPVRV 73 GQR+D FL + L V ++ I + + G++R+ N ++P +++ +E+ I Sbjct: 19 EKGVGQRLDLFLSSLL-NVSRNKIKKKILSGDLRLKNGAVLEPSHRIRGIEEIEIRGGLT 77 Query: 74 AEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG-LRALRP 132 E P L K +A ILYED+ IL++NK G VH G G + L Sbjct: 78 EEI------PSLPKAEEIALEILYEDEEILIVNKQRGMVVHPSCGHWSGTLVNSLLFHYG 131 Query: 133 EAR------FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 E+ +VHRLD+DTSGV+++AK +L+SL Q ++ +QK YL L + ++ Sbjct: 132 ESLPGSSLLRPGIVHRLDKDTSGVMVIAKTERSLKSLLLQFSQRTVQKVYLCLCKNRFPY 191 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 S +A + ++ + V +GK +ETRF + + A+ ++C PV+GRTHQIRV Sbjct: 192 LRYSFEANIHRHASDRKKMAVH-RLKGKTAETRFTLLFASSQASFLKCEPVSGRTHQIRV 250 Query: 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDE 306 H + G PI D YG L LHA ALK HP +G+ + AP+ + Sbjct: 251 HLSHLGFPIIGDPLYGKGVRKYPFP--------LLLHAYALKIEHPRSGKKIEFMAPLPQ 302 Query: 307 GLKRCLQ 313 K L Sbjct: 303 DFKEALD 309 >UniRef50_B2KBB0 Pseudouridine synthase n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBB0_ELUMP Length = 299 Score = 322 bits (827), Expect = 9e-87, Method: Composition-based stats. Identities = 85/310 (27%), Positives = 137/310 (44%), Gaps = 43/310 (13%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEA 80 R+D FL + +I ++++G+V VN K KP + L GD V I Sbjct: 15 RLDLFLSENKPDYSRGLIQNLIKQGKVTVNGKERKPAWPLAEGDNVEIEW---------- 64 Query: 81 VSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFG----------VIEGLRAL 130 P ++ L D+I++ED ++ V+NKPSG VH S + + L Sbjct: 65 --PSVENKTGLKDLIIFEDKNMFVINKPSGMLVHPQSPVWEENPAAAFIGEETLVSLILA 122 Query: 131 RP------EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQW 184 P LVHRLD+DTSGV+++AK ++ E + M K Y A+V G Sbjct: 123 NPPKNFEKGITRAGLVHRLDKDTSGVMIIAKNSKTQDAMVEMFANREMHKTYEAIVCGVV 182 Query: 185 QSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQI 244 + P+ + + S+ G+ + T + V +R +L++ PVTGRT+Q+ Sbjct: 183 PDDKGIINVPIGRVTGGKIK----ASELGREAVTEYSVLQRKETVSLMKLHPVTGRTNQL 238 Query: 245 RVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPM 304 RVH + G+P+ D Y G RL LH+ + +F HP T + ++ Sbjct: 239 RVHMSWLGYPVLGDWLY-----------KGATAPRLMLHSKSAEFEHPFTSKPVKFTVAP 287 Query: 305 DEGLKRCLQK 314 + K + Sbjct: 288 PKDFKDSWKN 297 >UniRef50_Q2GGY1 Pseudouridine synthase n=13 Tax=Rickettsiales RepID=Q2GGY1_EHRCR Length = 337 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 75/324 (23%), Positives = 150/324 (46%), Gaps = 22/324 (6%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVR 67 K + I + + R+D F+ ++L + ++ + ++++ ++ + I+ + + D Sbjct: 18 KKIFIKSGDENNRLDKFIASKL-NISRNQVQQLIKDSKILLFDTIIRDNNHITKVNDIYN 76 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 I + +S + + ++YED I+++NK G VH G+G + + Sbjct: 77 ISIP------IKTISDTITPNHYIPISVVYEDHDIIIINKAPGITVHPGAGTNNNTLVNA 130 Query: 128 R--------ALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLAL 179 + +A ++HRLD+DTSG++++AK + L + L +K ++K+YLA+ Sbjct: 131 LVAHYGNSLSHVGKATRPGIIHRLDKDTSGLMVIAKNEKSYYFLSDLLLKKQIKKEYLAV 190 Query: 180 VRGQWQSHVKSVQAPLLKNILQSGERIVRVSQE-GKPSETRFKVEERYAF-ATLVRCSPV 237 V G +++ + V GK + T ++ ++ ++ A+L++C Sbjct: 191 VWGLPNPKSNTIKNYICVKPNNKQMMTVTHLPHKGKLAITEYQTQKSFSNIASLIKCRIH 250 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFD----RQLTEAGTGLNRLFLHAAALKFTHPG 293 TGRTHQIRVH Y G+ I D +YG + + L R LHA L FTHP Sbjct: 251 TGRTHQIRVHMSYIGNSIIGDQKYGKNNSKSVKYAKQSTIINTLKRQALHAYKLGFTHPT 310 Query: 294 TGEVMRIEAPMDEGLKRCLQKLRN 317 + + + + ++ + +L Sbjct: 311 SNTYIEFHSYIPNDIQMLIDELEQ 334 >UniRef50_B8CWB7 Pseudouridine synthase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWB7_HALOH Length = 310 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 86/318 (27%), Positives = 145/318 (45%), Gaps = 24/318 (7%) Query: 3 TETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEY-KLE 61 + I+ +EAG + FL+ +LK + + I ++ R+ +R+N + +K KL Sbjct: 11 KNKEEITSYRISDEEAGVTLYTFLKNRLK-MSRKFIRKMGREYRIRLNCRYVKFTEVKLN 69 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 +GD + + A L I+YED H+LV+NKP+ VH Sbjct: 70 SGDLIEFNLNFKEKT--------YYDPAPLDLDIIYEDRHLLVINKPANMLVHPTPVEKS 121 Query: 122 GVIEGLRALR----PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYL 177 I + +HRLDR+T+G+LL+AK + A + Q + + ++YL Sbjct: 122 NTIVNGVLYHMRNQGNYNLVRPIHRLDRNTTGLLLIAKNQYAHNYITHQFQNNNIHREYL 181 Query: 178 ALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPV 237 A V G + +S+ AP+ K +R V + GK + T KV + +L+R Sbjct: 182 AFVHGNVEFKKESINAPIGKTRDSLIKRKVDHTL-GKRAVTHIKVVKPGGLISLIRVKLE 240 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQIRVH + GHP+ D YG + + R LH+ + P + Sbjct: 241 TGRTHQIRVHLSHLGHPLLGDTLYGGEDI---------LIKRPALHSYKVTCCLPFKHKE 291 Query: 298 MRIEAPMDEGLKRCLQKL 315 + +AP+ +++ ++L Sbjct: 292 VTFKAPLPVDMEKLKKQL 309 >UniRef50_B0TWR8 Pseudouridine synthase n=19 Tax=Francisella RepID=B0TWR8_FRAP2 Length = 309 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 131/309 (42%), Positives = 191/309 (61%), Gaps = 4/309 (1%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 V+++ + D QRIDNFL ++ +PKS+IYR +RKGE+RVNKKR+K ++ AGD V Sbjct: 3 KVQLIEVADDVIEQRIDNFLISKFSRLPKSLIYRWIRKGELRVNKKRVKQTTRVSAGDIV 62 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 R+PP + E E A + L ILYE D +V++KPSG AVHGGSG++ G++E Sbjct: 63 RVPPFSLEENLEIA-KVSKSHLDFLEQRILYETDDYIVVDKPSGMAVHGGSGVNSGLVER 121 Query: 127 LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 LR LRP+ R L+LVHRLD++TSG +L+AKK S+L + +E+ + K Y ALV G W Sbjct: 122 LRQLRPKVRRLDLVHRLDKETSGCVLLAKKHSSLVYFFDIFKERKVNKIYYALVHGHWDE 181 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQ-EGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245 V ++ PL + + G+RIV+V + EGK + TR ++ +L+ TGRTHQIR Sbjct: 182 KVDAIDLPLSRTETKDGQRIVKVDKREGKRALTRILAVQKIGDYSLLEIKLETGRTHQIR 241 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMD 305 VHT+ GHPI D +YG D++L G+++L LHA L+F +++ IEA +D Sbjct: 242 VHTRAMGHPIVADKKYGYMVDDKKL--LAKGVDKLLLHAGKLEFYDEKQQKLISIEAKLD 299 Query: 306 EGLKRCLQK 314 ++ Sbjct: 300 SRFDEFVKT 308 >UniRef50_C2D7A7 Pseudouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7A7_9ACTN Length = 338 Score = 321 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 80/322 (24%), Positives = 143/322 (44%), Gaps = 26/322 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIP 69 + +T R+D FL T + ++ ++ + +V +N ++ GD + + Sbjct: 8 LLVTPQHDRMRLDAFLSTCSELGARNACAHLIEQRKVEINDTLALSKSERVRMGDRICV- 66 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EGLR 128 A++ + S H+ A++ I YEDD++LV++K +G H G + L Sbjct: 67 ----AQQIDNTSSSHIMPNASIPLDIRYEDDYLLVISKQTGLVCHPSPGHVDDTLSNALV 122 Query: 129 ALRP--------EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 A +VHRLD DT+G+++ AK + ++L + +R + + Y+ LV Sbjct: 123 AHCGYEHLGLLQGDDRPGIVHRLDMDTTGLMVAAKDNTTQQALQDLIRLRVFDRRYIVLV 182 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA------FATLVRC 234 +G ++ + ++ + + + + T FK ER+ +L+ C Sbjct: 183 QGYVTPDEGTITTGIARSKKNRLKMCISKDPASREAITTFKTLERFEAGSKDDGYSLLEC 242 Query: 235 SPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGT 294 TGRTHQIRVH +Y GH + D YG + GL R FLH+ + F HP T Sbjct: 243 HLYTGRTHQIRVHMRYVGHSVVGDPLYGRKG-----DALNQGLQRQFLHSWRMSFDHPIT 297 Query: 295 GEVMRIEAPMDEGLKRCLQKLR 316 E ++ + L L +L+ Sbjct: 298 HEHLQFCDKLPSDLSEVLARLQ 319 >UniRef50_B5ZBC1 RluA n=15 Tax=Ureaplasma RepID=B5ZBC1_UREU1 Length = 299 Score = 320 bits (821), Expect = 5e-86, Method: Composition-based stats. Identities = 81/303 (26%), Positives = 137/303 (45%), Gaps = 17/303 (5%) Query: 18 AGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPVRVAER 76 + +RID FL + ++ I ++L + V VN I K Y L+ D V I + Sbjct: 9 SPKRIDKFLVE-VTDYSRTSIKKMLEQNLVLVNDNIITKQSYLLQKNDSVEIKNEQCVID 67 Query: 77 EEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARF 136 ++ + P I++ED +LV+NKPSG VH S + + Sbjct: 68 SQKELLPFAC-----PLEIVFEDQDLLVINKPSGMLVHPTSFQEQNTLANALKHYLKTDD 122 Query: 137 LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ--SHVKSVQAP 194 + HRLD++TSG++++ K + AL L +Q +K ++K Y A+V ++ + P Sbjct: 123 FYITHRLDKNTSGLIVICKNQKALCCLQQQFMQKTVKKSYYAIVHNRFDMHHLHFMINEP 182 Query: 195 LLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHP 254 + + ++ K + + KV E+Y LV S +TGRTHQIRVH ++ HP Sbjct: 183 IGHSYQDKLRMKTGDAKNVKEAISIVKVIEQYQNTALVEVSIITGRTHQIRVHMRHINHP 242 Query: 255 IAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQK 314 I D YG + +LH+ + F HP T E++ + M +++ Sbjct: 243 IYNDPLYGISKHTTPYE--------QYLHSFYISFIHPSTNEIVEFKTLMPNEFINLIKE 294 Query: 315 LRN 317 + Sbjct: 295 WKT 297 >UniRef50_C0Z877 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z877_BREBN Length = 310 Score = 319 bits (820), Expect = 6e-86, Method: Composition-based stats. Identities = 97/312 (31%), Positives = 156/312 (50%), Gaps = 19/312 (6%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 ++ + G ++ +R +L V M+ R+ R + +N+K+ + +++AGD + + Sbjct: 8 EYTVSEQDTGMNVEQIVRQKL-NVSGRMMQRLTRSKGILLNRKQPFLQRQVKAGDTIAVR 66 Query: 70 PVRVAER----EEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIE 125 + E+ + P + ILYEDDH+L+ NKP+G VH + ++ Sbjct: 67 VIERQEQVPRQPQHDTKPEGPNTPMPSIDILYEDDHLLIANKPAGMMVHPIKQETDTLVH 126 Query: 126 GLRAL---RPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 L A+ R E + VHRLD+DTSG +LVAK + LRE G+ ++YLA+ G Sbjct: 127 ALAAVLAARGEQTSVHPVHRLDKDTSGAILVAKSSYGHQLADRLLREGGIHREYLAVASG 186 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 ++ AP+ ++ +R V + G P+ T ++V++ TL R TGRTH Sbjct: 187 VLSEGAGTIDAPIGRDARHPTKRRVV--ESGDPAITHYEVQQTSEEMTLARVWLETGRTH 244 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH + GHP+A D YG A L R LHA+ L F HP + + +EA Sbjct: 245 QIRVHFAHIGHPLAGDTMYGG---------ARGLLRRQALHASKLSFLHPLLEKEIVVEA 295 Query: 303 PMDEGLKRCLQK 314 P+ +KR +Q Sbjct: 296 PIPSDMKRLMQA 307 >UniRef50_C4XFS9 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=C4XFS9_MYCFE Length = 315 Score = 319 bits (820), Expect = 7e-86, Method: Composition-based stats. Identities = 86/316 (27%), Positives = 147/316 (46%), Gaps = 38/316 (12%) Query: 7 SVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNK--KRIKPEYKLEAGD 64 S+ +++ E RID ++ Q + ++ I ++ +G V +N + K Y + G Sbjct: 8 SMLKISVQYKE---RIDKYI-GQNSELSRNDIKELIEQGAVYINDNVQVHKCNYIVREGQ 63 Query: 65 EVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI 124 E+ I + E + + + I YEDD ++++NKPS VH G + Sbjct: 64 EITIVKLLNKEIKI--------EPVNIPLDIKYEDDDLVIINKPSNLVVHPSPGHYNDTL 115 Query: 125 EGLRALRPEAR--------FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDY 176 + +VHR+D+DTSG+L++AK SL + L+ +++ Y Sbjct: 116 VNGLLYHFKNNLSNENGLLRPGIVHRIDKDTSGLLIIAKNNKMHNSLTDMLKRHEIERSY 175 Query: 177 LALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY----AFATLV 232 LA+VRG ++ + + P+ +N + +++ V +EGK + T + + + +LV Sbjct: 176 LAIVRGLIENPLTKINLPIARNTVD--RKMMSVHKEGKEAITFVHLLKHFYLDKEPMSLV 233 Query: 233 RCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHP 292 RC TGRTHQIRVH Y HP+ D YG + LHA LKF HP Sbjct: 234 RCELKTGRTHQIRVHLSYIKHPVYGDPTYGKSVDEFN----------QRLHAYKLKFIHP 283 Query: 293 GTGEVMRIEAPMDEGL 308 T + + + AP+ + Sbjct: 284 LTKKEICVYAPVPKEF 299 >UniRef50_C0E4Q3 Pseudouridine synthase n=2 Tax=Corynebacterium matruchotii RepID=C0E4Q3_9CORY Length = 310 Score = 319 bits (819), Expect = 8e-86, Method: Composition-based stats. Identities = 89/325 (27%), Positives = 139/325 (42%), Gaps = 23/325 (7%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 M ET + + + A R+D L G+ +++ + KG+V ++ K K+ Sbjct: 1 MSRET---RSLPVPEGLADMRVDVALSKLF-GLSRTVSADLATKGDVLIDGKPATKSDKI 56 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 G + + + + P + V ILY D+ ++ ++KP G A H G Sbjct: 57 TDGAWLEVLLPEPQK----PLVPTEELVDG--LEILYADEDLIAVDKPVGVAAHPTVGWD 110 Query: 121 FGVIEGLRAL-------RPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQ 173 + G A +V RLD TSGV++VA L +E+ + Sbjct: 111 GPTVVGGLAAAGYRISTSGPPERNGIVQRLDVGTSGVMVVAASERGYSVLKRAFKERTVS 170 Query: 174 KDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVR 233 K Y ALV+G +++A + ++ V+ +GK + T ++ E + A+L+ Sbjct: 171 KTYHALVQGHMDPLAGTIEANIGRHPSSG--WKFAVTSDGKHAVTHYETLEAFVAASLLE 228 Query: 234 CSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPG 293 TGRTHQIRVH HP D YG A GLNR +LHA L F HP Sbjct: 229 VHLETGRTHQIRVHMSALHHPCCGDPMYGADPQ----LSARLGLNRQWLHAVKLGFYHPA 284 Query: 294 TGEVMRIEAPMDEGLKRCLQKLRNA 318 G + IE+P L+ L+ LR Sbjct: 285 DGRWLEIESPYPPDLRHALEVLRAE 309 >UniRef50_Q28US1 Pseudouridine synthase n=43 Tax=Rhodobacterales RepID=Q28US1_JANSC Length = 354 Score = 319 bits (819), Expect = 8e-86, Method: Composition-based stats. Identities = 106/336 (31%), Positives = 159/336 (47%), Gaps = 26/336 (7%) Query: 6 PSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDE 65 V+ + I D+ QR+D + R VP+ I ++ RKGE+RV+ R+K +LE G Sbjct: 2 SGVQTLEIGPDDGDQRLDRWFRRIFPHVPQGRIEKMCRKGEIRVDGGRVKSNTRLEVGQM 61 Query: 66 VRIPPVRVAEREEEAVSPHLQKVAALADV--------ILYEDDHILVLNKPSGTAVHGGS 117 VR+PP+ A + + + + ++D ++Y DDHI+ +NKP+G GG+ Sbjct: 62 VRVPPLPDAADPKADPANWVNNASRISDADEKMIRAAVIYRDDHIIAINKPAGLPTQGGT 121 Query: 118 GLSFGVIEGLRALRPE-ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDY 176 G S V AL+ LVHRLD+DTSGVLL+A+ R ++L + R + +K Y Sbjct: 122 GQSRHVDGLAEALKFGLEDKPRLVHRLDKDTSGVLLMARTRMGAKALTDAFRLRSTRKIY 181 Query: 177 LALVRGQWQSHVKSVQAPLLKNILQS------GERIVRVSQ-----EGKPSETRFKVEER 225 A V G + +++ L+K R V V + K +ET + V Sbjct: 182 WAAVAGSPLPRMGTIKLGLVKAPGHGRGGENEKMRAVPVDEIAQVDGAKRAETDYAVMSN 241 Query: 226 YAF-ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNR----- 279 P+TGRTHQ+R H GHPI D +YG + G L Sbjct: 242 LGGRVCWCALVPITGRTHQLRAHMAEIGHPIIGDGKYGGSGQENLGDGWGAQLGGEISRK 301 Query: 280 LFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 L LHA +L F HP TG + + AP+ E + + L Sbjct: 302 LHLHARSLSFRHPMTGAQVNLVAPLPEHMAKTWDTL 337 >UniRef50_C8NZX3 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZX3_ERYRH Length = 298 Score = 319 bits (818), Expect = 9e-86, Method: Composition-based stats. Identities = 90/316 (28%), Positives = 148/316 (46%), Gaps = 23/316 (7%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 + IT+ G RID+FL L + +S I +++ G + N K YK + D + Sbjct: 1 MGSWIITSKTLGLRIDHFLNEHL-DLSRSKIASMIKDGTILCNDMPTKANYKTKLNDCIT 59 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 + + + ++YED+++LV+NKP G VH G+G+ + Sbjct: 60 --------ASTYQIKTLDIEPVKMDIDVVYEDEYLLVVNKPRGLVVHPGNGVKSDTLLHG 111 Query: 128 RALRPEAR-----FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 + LVHR+DR+TSG+L++AK + L EQL +K M + Y ALV G Sbjct: 112 LLYYLNSNCDHYIRPGLVHRIDRNTSGLLVIAKDDKTHQFLAEQLLDKTMNRTYYALVHG 171 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 + AP+ + + V ++ KP+ T F+ E Y ++L+ C TGRTH Sbjct: 172 VLPQAHVLIDAPIGPDKSNTKIMTVNQARS-KPARTHFEKIETYINSSLICCKLETGRTH 230 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH +A P+ D +YG + +L AA L+F HP ++M+ E Sbjct: 231 QIRVHALHANIPLHGDPQYGHPSDTDKT--------GQYLCAARLEFVHPKYLKLMQFEI 282 Query: 303 PMDEGLKRCLQKLRNA 318 P+ + + +L ++ Sbjct: 283 PLPRYFQDKITELSHS 298 >UniRef50_C2W5F3 Pseudouridine synthase n=4 Tax=Bacillus RepID=C2W5F3_BACCE Length = 307 Score = 319 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 85/315 (26%), Positives = 153/315 (48%), Gaps = 26/315 (8%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 + + +G ID+ L+ + G+PK +++++ + + VN +R L+ GD++++ Sbjct: 11 EITVPTKWSGMSIDSLLKEEW-GIPKKLLHKLRMEKGIIVNGERKVWSEMLQEGDKLQVH 69 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 E + + +++EDDH+L++NKP+ H + G + L A Sbjct: 70 MFAQEE--------YGVQPEYGDLEVIFEDDHVLIVNKPAHMDTHPSNKGGTGTLANLVA 121 Query: 130 LRPE----ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 + + +HRLD+DT+G ++ AK A + L E+ +++ YLALV G+ + Sbjct: 122 FHLQMQGVETKVRHIHRLDKDTTGGVVFAKHGIAGVIMDRLLMERNIKRTYLALVEGKVR 181 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA--FATLVRCSPVTGRTHQ 243 + + ++ + R RVSQ+G + T +K+E+ + TLV TGRTHQ Sbjct: 182 KKQGIIDEAIGRDRHHATRR--RVSQKGDRAVTHYKIEKYFKKQDVTLVTLQLETGRTHQ 239 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH ++GHP+ D YG T + LHA + F HP T E + +EAP Sbjct: 240 IRVHMSHSGHPLIGDVLYGG---------QATYMPYQALHAMRIHFLHPITKEEITVEAP 290 Query: 304 MDEGLKRCLQKLRNA 318 + L ++ + + Sbjct: 291 LPNNLNNIIESFKMS 305 >UniRef50_B1H0R5 Pseudouridine synthase n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0R5_UNCTG Length = 296 Score = 318 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 88/308 (28%), Positives = 145/308 (47%), Gaps = 17/308 (5%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 ++ I +R D++L + K +S ++ + V VN K I +KL+ GD + Sbjct: 1 MQEKIIYEKFERERADSYLASIYKDYSRSYFQKLTDRQRVFVNDKIIPVSHKLKRGDIIT 60 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI-EG 126 I + + + + + + D++ V+NK SG VH G G + Sbjct: 61 IEFEKEEKFQIKPEKIKIDIIYEDDDIV--------VVNKRSGIVVHPSYGHLSGTLLNA 112 Query: 127 LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 L L+HRLD+DTSGV++ AK A S+ +QL+++ ++K Y A V+G Sbjct: 113 LMGYSAGKYNPYLIHRLDKDTSGVIVFAKTEKAKISISKQLQKRVVKKIYYAAVKGVIAE 172 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKP-SETRFKVEERYAFATLVRCSPVTGRTHQIR 245 + ++APL ++ ++V V+ K + T FKV ER TL++ +TGRTHQIR Sbjct: 173 NRGIIKAPLGRSPKN--RKLVSVNPLAKKVAITEFKVIERKDDYTLLKVRIITGRTHQIR 230 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMD 305 H +Y HP+ D +YG R LHA + FTHP T + ++ A + Sbjct: 231 SHMKYINHPVIGDKQYGGPGTIGLKR-----CERQMLHAHNITFTHPSTSKTVKFIAQLP 285 Query: 306 EGLKRCLQ 313 +K + Sbjct: 286 NDMKAIFK 293 >UniRef50_D2RBY1 Pseudouridine synthase, RluA family n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RBY1_GARVA Length = 321 Score = 318 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 89/314 (28%), Positives = 149/314 (47%), Gaps = 19/314 (6%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 +T+ +G R D L L GV ++ ++ + + ++ ++ + L+ GD + + Sbjct: 15 FKVTSQFSGCRFDVCLSK-LMGVSRASAISLIERNQAKILGRKSQKSSILQDGDTIVVDQ 73 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 AE++EE + + I+Y DD ++V++KP G A H G S + Sbjct: 74 KESAEQKEE----QNNESSVCNIPIIYNDDDVVVIDKPVGVASHAAKGWSGPTVPECLEA 129 Query: 131 RP--------EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 + +V RLD TSG++LV K A + Q + ++K Y ALV+G Sbjct: 130 VGIDIKTTLCDESRKGIVSRLDVGTSGLMLVCKTDFAYEVMKNQFAKHIVKKTYHALVQG 189 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 ++ AP+ + + ++ +GKP+ T + V ER++ ATLV + TGRTH Sbjct: 190 DLAQDKATIDAPIGRAKVSDFR--FTITSDGKPAVTHWDVLERFSQATLVSVNLETGRTH 247 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH GHP+ D YG GL R +LH+ L FTHP TG+ + +++ Sbjct: 248 QIRVHFSSIGHPLVGDSMYGANPV----LAQKLGLQRQWLHSMELTFTHPRTGKSVTVKS 303 Query: 303 PMDEGLKRCLQKLR 316 L+ L+ +R Sbjct: 304 HYPLDLQHALEAMR 317 >UniRef50_C0ZCK6 Pseudouridine synthase n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZCK6_BREBN Length = 302 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 107/320 (33%), Positives = 159/320 (49%), Gaps = 25/320 (7%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 MK E + + D+A I N LR + K +P+ ++ + + EV ++ + + Sbjct: 4 MKKEGEWLVALLRDKDDA-IPIGNLLREEWK-LPRKQVHLLFQHKEVLLDGEPVAQHVVG 61 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLS 120 +AG E+R+ + A+ A ILYEDDH+L++NKP G +H Sbjct: 62 KAGQEIRLRMCKPEA--------LGLDPASEAPEILYEDDHLLIVNKPVGLLLHPTERYH 113 Query: 121 FGVIEGLRALR----PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDY 176 ++ L + + VHRLD+DTSGV+L AK A L E LRE+ +++ Y Sbjct: 114 HVTLDHLVSGHFFRTGLEAKVRHVHRLDQDTSGVVLYAKHPWASALLDEMLRERTIKRTY 173 Query: 177 LALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSP 236 +A V GQ + P+ K+ R RV+ G P+ T ++V+ER+ AT V C Sbjct: 174 VAYVSGQMPKERGKINEPIGKDRNHGTRR--RVTPNGDPAITHYQVKERFQTATKVECQL 231 Query: 237 VTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGE 296 TGRTHQIRVH + GHP+ D+ YG + + R LHAA LKF HP GE Sbjct: 232 ETGRTHQIRVHFSHIGHPLLGDELYGGKR---------ELIKRQALHAAVLKFEHPFGGE 282 Query: 297 VMRIEAPMDEGLKRCLQKLR 316 V+ + AP+ L +KLR Sbjct: 283 VIEVTAPLPLDLFHLEKKLR 302 >UniRef50_A5EXY5 Pseudouridine synthase n=2 Tax=Cardiobacteriaceae RepID=A5EXY5_DICNV Length = 313 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 130/318 (40%), Positives = 187/318 (58%), Gaps = 8/318 (2%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 + + V + ++A +AGQR+DNF+R +PKS IY++LRKGEVR NKKR+KP K+ Sbjct: 3 QIDAHRVHFMTVSAADAGQRVDNFIRKYHPALPKSRIYQMLRKGEVRRNKKRVKPTDKIC 62 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 AGD +R+PP+ A+R + A+ + QK + +LYEDDH L+LNKP+G VHGGSG F Sbjct: 63 AGDVIRLPPIINAQRADVAIPIYWQK--RIEAAVLYEDDHFLILNKPAGIVVHGGSGHEF 120 Query: 122 GVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 GVI+ +R++ E + EL HRLD DTSGVL++ K R AL + + E ++K Y ALV Sbjct: 121 GVIDVVRSIWGEN-YAELAHRLDGDTSGVLVLGKHRQALNAFQTAMNEGTVEKRYWALVD 179 Query: 182 GQWQSHVKSVQAPLLKNILQ-SGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 G W V L K L + V + + + T F V +R+ ATL+ TGR Sbjct: 180 GVWTREEAEVVVHLTKAPLNVREKMQVSELENAQFARTWFYVLQRWQDATLMEAVLDTGR 239 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRV + H IA D +YG REF+ + + G + LFLHA +KF + + + Sbjct: 240 THQIRVSAAHCQHAIAGDKKYGKREFNDLVRK--KGFHGLFLHAREIKFC--YQNQTIHV 295 Query: 301 EAPMDEGLKRCLQKLRNA 318 AP+ E +++ L+ Sbjct: 296 MAPLTEAMQQLLEHWTQE 313 >UniRef50_B7HGW1 Pseudouridine synthase n=52 Tax=Bacillales RepID=B7HGW1_BACC4 Length = 297 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 86/312 (27%), Positives = 140/312 (44%), Gaps = 25/312 (8%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRIL-RKGEVRVNKKRIKPEYKLEAGDEV 66 I E G + FL+T KG+ K+ + I G + VN + ++L AG+E+ Sbjct: 5 TLKWDIGPAEEGTLVREFLKT--KGISKAALTDIKFHGGAIEVNGQHASVRHQLRAGEEL 62 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 R+ E + I+YEDD +L++NK + + G + Sbjct: 63 RVFFPVEERSEGM-------MAEDIPLCIIYEDDAVLIINKEANMSTIPSREHPAGSVAN 115 Query: 127 LRALRPEARF----LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 + + + +V RLDRDTSG++L+AK R L +Q ++K +++ Y A+V G Sbjct: 116 ALLSHYDKQHLASTVHIVTRLDRDTSGLMLIAKNRFVHHLLSKQHQQKAVKRTYEAIVHG 175 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 + + AP+ + ER V ++G+ + T FKV + T V TGRTH Sbjct: 176 KIVEREGMIDAPIGRKSDSIIERTVC--EDGQRAVTHFKVIDSTYHKTHVALELETGRTH 233 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH + GHP+ D YG R + + R LH+ +L F HP + M Sbjct: 234 QIRVHMAHVGHPLLGDSLYGGRRDE---------MKRQALHSKSLTFYHPILEKEMSFTI 284 Query: 303 PMDEGLKRCLQK 314 + ++ L+ Sbjct: 285 KLPSDMQEVLRH 296 >UniRef50_A5INM9 Pseudouridine synthase n=7 Tax=Thermotogaceae RepID=A5INM9_THEP1 Length = 304 Score = 317 bits (814), Expect = 3e-85, Method: Composition-based stats. Identities = 110/310 (35%), Positives = 161/310 (51%), Gaps = 22/310 (7%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIK-PEYKLEAGDEVRIP 69 V +T + +R+D FLR QLK VP S+IY+++RKG+V VN KR+K P + LE GD V Sbjct: 3 VEVTKENFYRRLDKFLRNQLKDVPLSVIYKLIRKGKVYVNGKRVKDPSFDLEEGDVVEFR 62 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 V + + + L V + +LYE H LVLNKP A+H G G+ + Sbjct: 63 YVNLENLPKRSEKKDLTPV-PMKLDVLYEGKHYLVLNKPPNIAIHPGKGVHVATLIEGLL 121 Query: 130 LRPEARF--LELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 + + LVHRLD+DTSG+L+VAK R A R L E +++ ++K+Y+ LVRG +++ Sbjct: 122 HYGQEKGFSPFLVHRLDKDTSGLLVVAKDREAARILTELFKDRNIEKEYVTLVRGTPENN 181 Query: 188 VKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVH 247 + + +G+ + + + +L+R TGR HQIR H Sbjct: 182 -----------------MKITIPLDGQEAISEIVSVKSLRDVSLLRVKIHTGRKHQIRRH 224 Query: 248 TQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEG 307 G P+ DD YGDR F+R+ + GL RLFLH+ +KF P T E AP+ + Sbjct: 225 LSQIGFPVVGDDTYGDRHFNREFRK-RYGLKRLFLHSYRMKFIDPWTEEEKDFRAPLPDD 283 Query: 308 LKRCLQKLRN 317 L L L Sbjct: 284 LLSVLNFLEE 293 >UniRef50_C1FEQ4 Predicted protein n=2 Tax=Micromonas RepID=C1FEQ4_9CHLO Length = 357 Score = 317 bits (814), Expect = 3e-85, Method: Composition-based stats. Identities = 93/328 (28%), Positives = 138/328 (42%), Gaps = 37/328 (11%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPVRVAEREEE 79 R+D FL Q+ GV +S I ++ G V VN KP +KL+ GD V E Sbjct: 37 RLDAFLADQISGVSRSRIVESIKSGVVVVNGNVTTKPSHKLDIGDRV-------ICGEIV 89 Query: 80 AVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRP------- 132 A P + +++EDDH++V+NKP G VH +G + G + Sbjct: 90 ASPPTEVAPENIPLDVVFEDDHLVVVNKPPGMVVHPSAGHAGGSLVNALLFHCNERSNRG 149 Query: 133 -------EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 + L +VHR+D+ TSG+L++AK +A L Q + +++ YLA+V G Sbjct: 150 DDASKMIDVPRLGVVHRIDKGTSGLLVMAKDAAAQAGLQTQFANRSVRRRYLAIVLGTPA 209 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY--AFATLVRCSPVTGRTHQ 243 + AP+ ++ + + G+ + + F V R A+LV TGRTHQ Sbjct: 210 RESGRIDAPIGRDPADRLKMAIVRGATGRQAISNFGVRARLVRGNASLVEWQLETGRTHQ 269 Query: 244 IRVHTQYAGHPIAFDD-------------RYGDREFDRQLTEAGTGLNRLFLHAAALKFT 290 IRVH + GHPI D+ R E R LHA +L F Sbjct: 270 IRVHAREMGHPIVGDEAYGGGGSAAAEFLRRDGAMSAAAAREIVAKCARPMLHARSLGFR 329 Query: 291 HPGTGEVMRIEAPMDEGLKRCLQKLRNA 318 HP TGE + +L Sbjct: 330 HPVTGEEISFAVEPPPDFVDAFTELSKY 357 >UniRef50_A6CF60 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CF60_9PLAN Length = 317 Score = 316 bits (812), Expect = 5e-85, Method: Composition-based stats. Identities = 93/317 (29%), Positives = 149/317 (47%), Gaps = 20/317 (6%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + + G RID FL + + RI++ G +VN P ++ G ++ I Sbjct: 9 LIVEDYLDGARIDRFLSRHFRNYSTHRLQRIVQAGFAKVNGIPADPLQRVFRGQQINIRL 68 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 ++ L +LYED ++++NKP G H + G + Sbjct: 69 PEPPDKTY--------DPEPLPLEVLYEDAWLIIVNKPPGMIAHPAGNILSGTVANALQY 120 Query: 131 RPEAR-------FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 + + +VHRLD+ TSG+L+VAK+ RSL Q ++ + K YLA+VR Q Sbjct: 121 YLDQQTGVRSLLRPGIVHRLDQFTSGILIVAKEHLGHRSLSIQFQQNRVSKSYLAIVRDQ 180 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQ--EGKPSETRFKVEERYAFATLVRCSPVTGRT 241 + + + ++ Q+G + + K + TRF+V ER +L+R P TGR Sbjct: 181 PKQDLFENNDAIGEHPTQAGVCMTTHPEALRAKAAFTRFEVVERLPGHSLIRAFPKTGRL 240 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVH G PI DD YG+ D +L + ++R LHA ++F+HP T M I Sbjct: 241 HQIRVHLADLGFPIIADDFYGN---DARLLDDRELISRQALHAEQIEFSHPVTSLRMNIS 297 Query: 302 APMDEGLKRCLQKLRNA 318 A + + LQ++R+A Sbjct: 298 AGVPADFQLALQRIRSA 314 >UniRef50_A4RT55 Predicted protein (Fragment) n=3 Tax=Chlorophyta RepID=A4RT55_OSTLU Length = 332 Score = 315 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 82/339 (24%), Positives = 135/339 (39%), Gaps = 59/339 (17%) Query: 21 RIDNFLRTQLKGVP--KSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPVRVAERE 77 R+D ++ + + + ++ V +N K KP L+ GD + R E Sbjct: 2 RLDAYVAANVPDASASRGRVAAAIKARMVTLNGKTASKPSRALKPGDVIEGELERERASE 61 Query: 78 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEAR-- 135 + + I++ED+ +LV+NK +G H +G G + + Sbjct: 62 AKPEP-------WVKLDIVHEDESVLVVNKAAGMVTHPSAGHESGTLVNAVLGHCDLPEL 114 Query: 136 -------------------------------FLELVHRLDRDTSGVLLVAKKRSALRSLH 164 +VHRLD+ TSGV++VAK SA SL Sbjct: 115 VVPTGNQALSDDDEDDEDAVDEDEGARDGMIRPGIVHRLDKGTSGVMVVAKDASAHNSLC 174 Query: 165 EQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEE 224 EQ + +++ Y+A++ G ++AP+ ++ V G+ + + ++V Sbjct: 175 EQFAARVVRRKYVAILSGVPSPSKGRIEAPIGRDPRDRLRMAVT-QGGGRFAASNYEVIA 233 Query: 225 R--YAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFD-------------RQ 269 A+LV TGRTHQIRVH ++ GHPI DD YG ++ Sbjct: 234 TLANGNASLVEWRLETGRTHQIRVHAKHIGHPILGDDTYGGGGGAAVSALSRYGVFDVKE 293 Query: 270 LTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGL 308 + ++R LHA L FTHP +GE + E Sbjct: 294 AKALMSTIDRPMLHARTLGFTHPQSGEALDFSRDPPEDF 332 >UniRef50_C1CWT3 Pseudouridine synthase n=1 Tax=Deinococcus deserti VCD115 RepID=C1CWT3_DEIDV Length = 321 Score = 315 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 92/316 (29%), Positives = 141/316 (44%), Gaps = 37/316 (11%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPPVRVAEREEE 79 R+D L L G +S + + G V+V + + K KL G+ + + P + + Sbjct: 13 RLDAVLAA-LSGASRSQVAAWIAGGHVKVEGQPVTKVSLKLRGGERIDVSPPALPDAR-- 69 Query: 80 AVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR---PEAR- 135 + L ++YEDD+++ +NKP G H G+ G + R PE Sbjct: 70 ------VEAEDLPLDVIYEDDYLIAVNKPPGMVTHPAPGVLSGTLVNALLGRMPLPEQPD 123 Query: 136 -------FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHV 188 +VHRLD+DTSGV++VAK A L +++ +K YLA+ GQW++ Sbjct: 124 YDSEAGYRPGIVHRLDKDTSGVIVVAKTVGAHARLAAAFKDRETRKTYLAIAAGQWRADG 183 Query: 189 -KSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF-----ATLVRCSPVTGRTH 242 V+AP+ ++ +Q V + ++T F + LVR P TGRTH Sbjct: 184 PARVEAPIGRHPVQRQRMTVG-GANPREAQTLFTPLAAHPDGHGRTLALVRAQPRTGRTH 242 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH + G PI D YG + + R LHA L HPGTG ++ + A Sbjct: 243 QIRVHLAHLGSPILGDAVYG---------RSSETMLRHALHAHFLSVPHPGTGRLLHLHA 293 Query: 303 PMDEGLKRCLQKLRNA 318 P + + L A Sbjct: 294 PAPDDMLNAWIALGGA 309 >UniRef50_C6JBH1 Pseudouridine synthase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBH1_9FIRM Length = 299 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 81/312 (25%), Positives = 132/312 (42%), Gaps = 25/312 (8%) Query: 6 PSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRK-GEVRVNKKRIKPEYKLEAGD 64 + I+ + I +FL+ + G + ++ + + +N +R L+ D Sbjct: 2 QRILKYIISENTTPVTILDFLKKE--GFSRHILSSMKNTPNTIILNGERGFGRSVLKPQD 59 Query: 65 EVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI 124 + + E + I+YED+ ILV+NKP+ VH +G + Sbjct: 60 HLIVTVPETESGEN-------IIRTKMDLNIIYEDEDILVINKPADMPVHPSAGNYENTL 112 Query: 125 EGLRALR----PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 A E ++RLDRDT+G L++AK + L Q++++ + + YLALV Sbjct: 113 ANGIAWYFAEKGEDFVYRCINRLDRDTTGALILAKNPLSAAILSVQMKKRQILRTYLALV 172 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 G ++ AP+ + R V G+ + T ++ +L TGR Sbjct: 173 DGLLP-DSGTINAPIARMEGSVITREVNFG-TGESAITHYERLAAGKEYSLAELHLETGR 230 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH +Y GHP+ D Y +NR LH+ L+FTHP TG+VM Sbjct: 231 THQIRVHMKYIGHPLPGDYLY---------NPDYRRINRQPLHSYQLEFTHPTTGKVMLF 281 Query: 301 EAPMDEGLKRCL 312 AP+ Sbjct: 282 TAPLPIDFISAF 293 >UniRef50_Q2G4F0 Pseudouridine synthase n=12 Tax=Alphaproteobacteria RepID=Q2G4F0_NOVAD Length = 436 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 105/319 (32%), Positives = 159/319 (49%), Gaps = 14/319 (4%) Query: 6 PSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDE 65 V+ I D+AG R+D + + L V + + R R G++R++ KR + +LEAG Sbjct: 9 DQVRQFTIGKDDAGARLDRWFKRHLPQVGFATVSRWARTGQIRIDGKRADVDTRLEAGQI 68 Query: 66 VRIPP-----VRVAEREEEAVSPHLQKVAALADVILYE-DDHILVLNKPSGTAVHGGSGL 119 +R+PP V + E A P ++ LA+ ++ E D +VLNKP G A GGSG Sbjct: 69 LRVPPGNATPVGTPGKGERARKPLTEEQIQLAESMVLEKDRAAIVLNKPPGLATQGGSGT 128 Query: 120 SFGVIEGLRALRPEAR-FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLA 178 V L A E LVHRLD+DTSGVLL+A+ + ++ + +K Y A Sbjct: 129 HEHVDGLLDAYVNEGEARPRLVHRLDKDTSGVLLIARTPGSAAFFSKRFSCRSARKIYWA 188 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSG-ERIVRVSQEGKPSETRFKVEERYAF-ATLVRCSP 236 LV G ++ PL K G + +V S +G+ + +R++V R A V P Sbjct: 189 LVVGVPDVKDGLIELPLAKQPGTGGEKMMVDESGQGQSARSRYRVISRAGNAAAWVELQP 248 Query: 237 VTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGE 296 +TGRTHQ+RVH GHPI D +YG + G+ ++ LHA L+ HP G+ Sbjct: 249 LTGRTHQLRVHMAAIGHPIVGDGKYGG----QAAFLTGSISRKMHLHARRLRIEHPE-GD 303 Query: 297 VMRIEAPMDEGLKRCLQKL 315 ++ + AP+ + L Sbjct: 304 MIDVTAPLPAHFAASMASL 322 >UniRef50_A3VN52 Ribosomal large subunit pseudouridine synthase C n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VN52_9PROT Length = 324 Score = 315 bits (808), Expect = 2e-84, Method: Composition-based stats. Identities = 98/325 (30%), Positives = 152/325 (46%), Gaps = 16/325 (4%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKL 60 M V+ V +T+ EAGQR+D +++ + GV + + + LRKG+VR+N R+K ++++ Sbjct: 1 MGASVSGVQEVTVTSAEAGQRLDRWMKRRFPGVTQGQVQKWLRKGQVRLNGGRVKADHRV 60 Query: 61 EAGDEVRIPPVRVAEREEEAVSPHLQKVAALADV--ILYEDDHILVLNKPSGTAVHGGSG 118 E+G+ VR+PP+ P + A ++YEDD IL LNKP+G AV GG+ Sbjct: 61 ESGEVVRVPPIDPEAAAPPPSRPVVGPAEAEMMRGLVIYEDDDILALNKPAGLAVQGGAK 120 Query: 119 LSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLA 178 + L LVHRLDRDT GVLL+AK R+ +L ++ + K Y A Sbjct: 121 TLIHIDGMLDVFGEGEARPRLVHRLDRDTGGVLLLAKSRAVAATLSLAFQQHRIGKTYWA 180 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA-FATLVRCSPV 237 + +G + + K + G +R +++G+ + T ++ E A + P Sbjct: 181 ITKGVPHPLFGRIDMRIEK-AGEPGREKMRGTEQGQSALTDYQTVETAGQKAAFLALRPH 239 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGD-REFDRQLTEAGTGLNRLFLHAAALKFTH-PGTG 295 TGRTHQIRVH G PI D +YG L R H P G Sbjct: 240 TGRTHQIRVHLSAIGTPIVGDRKYGGAGAVLEGLPNQMHLFCRQM---------HVPRRG 290 Query: 296 E-VMRIEAPMDEGLKRCLQKLRNAR 319 + + A + G+ +R Sbjct: 291 RPPLVVTADLTGGMATSWSIFGFSR 315 >UniRef50_C7GZW0 Pseudouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZW0_9FIRM Length = 318 Score = 314 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 74/316 (23%), Positives = 149/316 (47%), Gaps = 28/316 (8%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 + + + I + ++ + + + ++ ++ +R+N K K + +AGD + + Sbjct: 22 KYVVEHNFENRSIKSIIKREYS-ISSRFLSKLKQEDLIRLNGKPAKNWFTPKAGDVIELV 80 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 + S + + + +YED+H+LV++KP+G VH G I Sbjct: 81 MPKE--------SSYFTPYSGIEINAVYEDEHLLVIDKPAGIVVHPTHGYEENTIAHALI 132 Query: 130 LR----PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 E + ++RLD DT+G+L++AK + ++ +++ ++K YLA+V G Sbjct: 133 HYMDTVGEEFKIRFINRLDMDTTGLLMIAKNQFIQNAVVSEMKRGNVEKRYLAVVHGLPC 192 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA--FATLVRCSPVTGRTHQ 243 + + AP+ + +++ + GKPS T +KV + + TGRTHQ Sbjct: 193 NREGIIDAPIKAVEGEPRRQVM---EGGKPSITEYKVVGVSDELNVSFLDVRLHTGRTHQ 249 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH ++ G PI D+ YG +E +R LH+ L+FTHP + +++ + A Sbjct: 250 IRVHLKHIGCPILGDEFYGGKES----------ADRQLLHSRYLRFTHPVSKKIVELTAN 299 Query: 304 MDEGLKRCLQKLRNAR 319 + + + L ++ ++ Sbjct: 300 LPDDIASILTHMQMSK 315 >UniRef50_B8GX34 Pseudouridine synthase n=7 Tax=Caulobacteraceae RepID=B8GX34_CAUCN Length = 331 Score = 314 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 104/316 (32%), Positives = 156/316 (49%), Gaps = 10/316 (3%) Query: 4 ETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAG 63 T V+ + + A E G R+D + + + + + ++ R G+VRV+ R K + KL AG Sbjct: 2 STKEVRTLYVDAGEDGVRLDRWFKRRWPHLNHIQLNKLFRSGQVRVDGSRAKADTKLAAG 61 Query: 64 DEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV 123 ++R+PP+ A + + VA ++LYED+ +L LNKP+G AV GG+ + + Sbjct: 62 SQIRVPPLPDAPDPSDKNKLSARDVAYAKSLVLYEDEEVLALNKPAGLAVQGGTKTTKHI 121 Query: 124 IEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 + L A LVHRLDRDTSGVLL+ K SA L ++ QK Y A+V G Sbjct: 122 DKLLSAWGEGVDRPRLVHRLDRDTSGVLLLGKTPSAAARLSGAFAKRKAQKTYWAIVAGN 181 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRV---SQEGKPSETRFKVEERYA-FATLVRCSPVTG 239 ++ L K + E +V + +P+ET F R T + P TG Sbjct: 182 PHPTEGVMELHLAKRGVGDRELVVPAQPKDPDAQPAETEFVTISRAGPRVTWMALRPHTG 241 Query: 240 RTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMR 299 RTHQ+R H + GHPI D +YGD + L LHA ++ HP G ++ Sbjct: 242 RTHQLRAHMKAMGHPILGDPKYGDEKSAPLSEGLK-----LQLHARSILLPHPSAG-MLH 295 Query: 300 IEAPMDEGLKRCLQKL 315 IEAP+ +K +K Sbjct: 296 IEAPLSPEMKEGFRKF 311 >UniRef50_A9MGU8 Pseudouridine synthase n=1 Tax=Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- RepID=A9MGU8_SALAR Length = 318 Score = 314 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 80/273 (29%), Positives = 125/273 (45%), Gaps = 17/273 (6%) Query: 12 AITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRIPP 70 ++ ++ GQR+D L +S I + V VN + KP+ K+ G+ V I Sbjct: 10 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILNQRVLVNGQLCDKPKEKVLGGERVAIDA 69 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV-IEGLRA 129 E + + I+YEDD ILV+NKP VH G+G G + L Sbjct: 70 EIDEEIRF--------EAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLH 121 Query: 130 LRP---EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 P + +VHRLD+DT+G+++VAK A L E L+ + + ++Y A+ G + Sbjct: 122 YYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTA 181 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 +V P+ ++ + V GKP+ T +++ E + T +R TGRTHQIRV Sbjct: 182 G-GTVNEPISRHPTKRTHMSV--HPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRV 238 Query: 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNR 279 H + HP+ D YG R + R Sbjct: 239 HMAHITHPLVGDQVYGGRPRPPKAHRKR-LFPR 270 >UniRef50_UPI0001C37137 ribosomal large subunit pseudouridine synthase D n=1 Tax=Chlamydia muridarum Nigg RepID=UPI0001C37137 Length = 338 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 86/323 (26%), Positives = 136/323 (42%), Gaps = 28/323 (8%) Query: 5 TPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKR-IKPEYKLEAG 63 P + G R+D L ++ + + G VRVN + + Y L G Sbjct: 11 FPPTDSFVVDERLIG-RLDKGLVLHNNAYSRAFYQQQIDLGRVRVNGRVQTRASYLLSQG 69 Query: 64 DEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV 123 D V + V +P + +YED+ ILV+NKP VH G G Sbjct: 70 DLVDLELVEEE-------TPSSLTPENIPLDKVYEDNMILVINKPRNMVVHPAPGHVQGT 122 Query: 124 IEGLRAL---------RPEAR-FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQ 173 + PE +VHRLD+DTSG+L+ K R A E K M+ Sbjct: 123 VVHALLHEIGERLKQEFPEEPWRPGIVHRLDKDTSGLLITVKTRRAKAVYSELFSSKQMK 182 Query: 174 KDYLALVRGQWQSHVKSVQAPLLKNILQSGERIV--RVSQEGKPSETRFKVEERYAFATL 231 K Y+A+ + + ++ ++ E V + ++ GK + T V ++ Sbjct: 183 KMYIAICINSPAQKH--IHTRIARHPVKRKEMTVLSKDTEGGKEAITHCHVLASNGRLSV 240 Query: 232 VRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTH 291 V P TGRTHQ+RVH ++ G PI D YG + + GL++ LHA +L FTH Sbjct: 241 VALYPETGRTHQLRVHMKHLGTPILGDPVYGVPSINFR-----YGLDKQQLHAYSLVFTH 295 Query: 292 PGTGEVMRIEAPMDEGLKRCLQK 314 P + E + + + + + ++K Sbjct: 296 PESAERVELVTKLPDDMTSLIEK 318 >UniRef50_A1AVB5 Pseudouridine synthase n=2 Tax=sulfur-oxidizing symbionts RepID=A1AVB5_RUTMC Length = 303 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 146/308 (47%), Positives = 198/308 (64%), Gaps = 15/308 (4%) Query: 12 AITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPV 71 + GQR+DN+L LKGVPKS I R++RKG VRVNK R K YKL D VRIPP+ Sbjct: 7 IVDEFSEGQRLDNYLLKILKGVPKSHICRVIRKGWVRVNKGRKKVSYKLILNDIVRIPPI 66 Query: 72 RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR 131 +V+ + +S L+K+ A LYED +L++NKPSG +VH GSG+ G+IE LR + Sbjct: 67 KVSIIKSIYISDSLKKLLIDAK--LYEDKGLLIINKPSGLSVHSGSGVDVGIIEALRQIY 124 Query: 132 PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSV 191 + +ELVHRLDR TSGVLL+AKKRS L++LHEQL + ++K Y ALV+G W ++ Sbjct: 125 KKP--IELVHRLDRATSGVLLIAKKRSVLKNLHEQLSQHTVEKRYTALVKGVWSKKCHTI 182 Query: 192 QAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF----ATLVRCSPVTGRTHQIRVH 247 APL +N R + V +GK + + F+ + ++ A+LV S TGRTHQIRVH Sbjct: 183 DAPLYQNS-----RYIMVDAKGKYAISHFQPLKNFSDGGFSASLVEISIETGRTHQIRVH 237 Query: 248 TQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEG 307 +YAGH +A DD+YGD+EFDRQ+ GL RLFLHA FT+P T ++ ++ A + Sbjct: 238 AKYAGHALACDDKYGDKEFDRQVK--FKGLKRLFLHAHQFIFTNPLTNDIQKVNASLPVE 295 Query: 308 LKRCLQKL 315 L+ L KL Sbjct: 296 LEEFLAKL 303 >UniRef50_B7GAM3 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7GAM3_PHATR Length = 325 Score = 313 bits (804), Expect = 4e-84, Method: Composition-based stats. Identities = 82/309 (26%), Positives = 134/309 (43%), Gaps = 26/309 (8%) Query: 20 QRIDNFLRTQLKGVPKSMIYRILRKGEVRV---NKKRI---KPEYKLEAGDEVRIPPVRV 73 +RID L + +S ++ V + N + +K+E G ++ I R Sbjct: 1 KRIDAVLAALEPEMSRSFCGNLVANKRVSIIQENGDNCLVDRKSFKVEPGQQLIISLPRE 60 Query: 74 AEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPE 133 L I++ED+H++V+NK + VH +G G + A Sbjct: 61 EGA-------SEIIAQDLPLDIIFEDEHMIVINKAANMVVHPAAGNWDGTVVNALAYYLA 113 Query: 134 AR------FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 R +VHRLD+ T+GVL+VAK L +L + ++K Y+A+ G Sbjct: 114 NRSESISFRPGIVHRLDKGTTGVLVVAKTSQTLATLSNFFAARQVKKTYMAITVGNP-GK 172 Query: 188 VKSVQAPLLKNILQSGERIVRVSQE-----GKPSETRFKVEERYAFATLVRCSPVTGRTH 242 + P+ ++ L V G+ + + +LV+ TGRTH Sbjct: 173 HVVIDKPIGRHPLHRQRMRVVPDPHQKNSTGRRALSYVDTLAFDGKLSLVQVRIETGRTH 232 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH Q PI DD YG +++++L++ + R LHA L+ HP TGE M +A Sbjct: 233 QIRVHLQDRHTPIYGDDIYGLADWNKKLSKTHRIV-RPLLHAYKLEINHPVTGEPMVFKA 291 Query: 303 PMDEGLKRC 311 + + +KR Sbjct: 292 SLADDMKRI 300 >UniRef50_Q211J3 Pseudouridine synthase n=81 Tax=Alphaproteobacteria RepID=Q211J3_RHOPB Length = 501 Score = 313 bits (804), Expect = 4e-84, Method: Composition-based stats. Identities = 113/320 (35%), Positives = 163/320 (50%), Gaps = 14/320 (4%) Query: 5 TPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGD 64 V+ V ++ADE R+D FL + G+ S I RI+RKGE+RV+ KR + +LE G Sbjct: 171 PTKVETVVVSADENNMRVDRFLEARYPGLSFSHIQRIVRKGELRVDGKRADSKDRLEEGQ 230 Query: 65 EVRIPPVRVAEREEEA---VSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 VRIPP+++ + + +AAL +ILYED ++VLNKP+G AV GGSG + Sbjct: 231 TVRIPPLKLDAPKVGTGNLSEAEQKTMAALRAMILYEDADVMVLNKPAGLAVQGGSGTTR 290 Query: 122 GVIEGLRALRP-EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 V L +R + + LVHRLD++T+G LL+AK R A +L RE+ +K Y ALV Sbjct: 291 HVDLMLEVMRDAKGQKPRLVHRLDKETAGCLLIAKTRFAATALTGAFRERSARKVYWALV 350 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKP----SETRFKVEERYA-FATLVRCS 235 G + + L K + I+R+++ G + T + V E A V Sbjct: 351 AGVPKPKQGRISTYLAKEESEDDT-IMRIAEHGDEGASHAVTYYAVVETSASKLAWVSLK 409 Query: 236 PVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTG 295 PVTGRTHQ+R H + GH I D +Y G NRL L A + HP G Sbjct: 410 PVTGRTHQLRAHMAHIGHAIVGDPKY---FNIENWQLPGGLQNRLHLLARRIVIPHPRGG 466 Query: 296 EVMRIEAPMDEGLKRCLQKL 315 + + AP+ + + L Sbjct: 467 -TIDVSAPLPPHMLQSWNLL 485 >UniRef50_A5ZUU7 Pseudouridine synthase n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZUU7_9FIRM Length = 293 Score = 313 bits (804), Expect = 4e-84, Method: Composition-based stats. Identities = 87/307 (28%), Positives = 136/307 (44%), Gaps = 25/307 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVR-VNKKRIKPEYKLEAGDEVRIP 69 I+A + G + +FLR Q G + ++ + E +N ++ L GD R+ Sbjct: 7 YTISAADEGMIVLDFLRKQ--GFSRHILTAMKADREALSLNGQKAGGRTVLSCGDHFRVR 64 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG--- 126 + V L +LYED+ ILV+NKP+ VH G + Sbjct: 65 LLE-------TVPADGILPTPLNIPVLYEDEDILVVNKPADMPVHPSLGNYTNTLANGVA 117 Query: 127 -LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 + E+ ++RLDRDTSG L++AK + L Q+R + + + YLA+V G + Sbjct: 118 AYLETKGESCPFRCINRLDRDTSGALILAKNALSAAILSVQMRNRQISRTYLAVVEGIPR 177 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245 ++ AP+ + ER + + G+ + T +++ E +L+ TGRTHQIR Sbjct: 178 Q-SGTISAPISRAADSVIERRIDF-ENGESAITHYQLLEVKNNHSLLEIHLETGRTHQIR 235 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMD 305 VH Y GHP+ D Y R LH+ LKF HP TG M + AP+ Sbjct: 236 VHMGYIGHPLPADYLY---------NPVYDTFKRQPLHSLQLKFCHPITGTPMCLMAPVP 286 Query: 306 EGLKRCL 312 E + Sbjct: 287 EDMSNAF 293 >UniRef50_A4J479 Pseudouridine synthase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J479_DESRM Length = 303 Score = 313 bits (804), Expect = 5e-84, Method: Composition-based stats. Identities = 82/308 (26%), Positives = 143/308 (46%), Gaps = 25/308 (8%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + I G ++ LR ++ GV ++++ R R + +N+ +K ++ G+ + + Sbjct: 12 LIIPQTMDGWTVERVLRREV-GVSRTLLRRAKRNRVILLNQLPVKTNVTVKTGEVLEL-- 68 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 + ILYED H+L +NKP G VH + + G + Sbjct: 69 -------WMGSQETQVVPERMELNILYEDAHLLAVNKPPGMLVHPLTNETSGTLANGVLY 121 Query: 131 R----PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 VHRLDR+TSG++L+A+ + L Q+++ + YLALV+G+ Q Sbjct: 122 HWLQQGTIDRFRPVHRLDRNTSGIVLIARNPYVQQQLQIQMKQGQFVRRYLALVKGKVQP 181 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 +QAP+ +R+ +S GK + + ++V + A+LVR TGRTHQ+RV Sbjct: 182 EQGVIQAPIALEEGSFIKRM--ISPAGKEAISHYQVLRTFNQASLVRVELETGRTHQVRV 239 Query: 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDE 306 H + GHP+ D YG + + R LH A L F HP G ++I + Sbjct: 240 HMAHMGHPLLGDSLYGGDTSN---------IKRQALHCAYLAFNHPVQGSRIKISCSVAG 290 Query: 307 GLKRCLQK 314 +++ +++ Sbjct: 291 DIRQLMEE 298 >UniRef50_Q6Q916 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q6Q916_9GAMM Length = 311 Score = 313 bits (803), Expect = 5e-84, Method: Composition-based stats. Identities = 81/315 (25%), Positives = 138/315 (43%), Gaps = 20/315 (6%) Query: 12 AITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPV 71 ++ + + R+D + ++ I + + +G V +N P + GD ++I P+ Sbjct: 6 TVSKEHSKMRLDKVSTIIFEDFSRTQIKKWILEGRVFLNDDIASPRDLVHEGDSIQIDPI 65 Query: 72 RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG-LRAL 130 + + ++YE+D L++NK +H G+G S G + L Sbjct: 66 AEEKISWV--------PEEIDIDVIYENDDYLIINKQPNLIMHPGAGCSSGTLANALLHH 117 Query: 131 RPEAR---FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 PE + +VHRLD+DTSGV+LVA+ + L+++ + K Y A+V G Sbjct: 118 YPELKNIARAGIVHRLDKDTSGVILVARNDKFRNYFVDLLQKREVTKLYSAIVVGTII-G 176 Query: 188 VKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVH 247 V P+ ++ + +R +GK SET K++E +L+ S +TGRTHQIRVH Sbjct: 177 SFKVTDPIGRDKKNRVKMSIR--SDGKESETFVKLKESLGNYSLLDISIMTGRTHQIRVH 234 Query: 248 TQYAGHPIAFDDRYGD-----REFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 PI D+ Y + +L + R LHA L F T E Sbjct: 235 LSSKKLPIIGDNTYNPAKNIAKGTSSKLIDIIKQFPRQALHAYQLSFKDMHTDEFKTFNC 294 Query: 303 PMDEGLKRCLQKLRN 317 + + +K + L+ Sbjct: 295 DIPDDMKYLIDILKK 309 >UniRef50_A0Z298 Pseudouridine synthase n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z298_9GAMM Length = 320 Score = 313 bits (803), Expect = 6e-84, Method: Composition-based stats. Identities = 157/304 (51%), Positives = 203/304 (66%), Gaps = 6/304 (1%) Query: 12 AITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPV 71 + +EAGQR+DNFL+ GVPK+ IYR +RKGEVRV+K R+KP+ +LEAG VRIPP+ Sbjct: 22 VVLPEEAGQRLDNFLQRVRGGVPKTRIYRAIRKGEVRVDKGRVKPDTRLEAGVSVRIPPL 81 Query: 72 RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR 131 RV E+ E A + + L I+ E+ +LV+NKP G AVHGGSG++ G+IE LRA+ Sbjct: 82 RVPEKAEAAGAAGWR--TRLRASIIREESTLLVVNKPPGLAVHGGSGINVGLIETLRAMY 139 Query: 132 PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSV 191 R+LELVHRLDRDTSG+LLVA++ S LR+LH LR G+ K YL LV G+W +H+K V Sbjct: 140 ETDRYLELVHRLDRDTSGLLLVARRASTLRNLHVLLRSNGIDKRYLCLVNGRWPAHLKRV 199 Query: 192 QAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYA 251 APL K L SGER V+V+ G+ S T F+V R++ ATLV PVTGRTHQIRVH Q+A Sbjct: 200 DAPLEKFALPSGERRVKVAATGRQSLTTFRVVRRWSSATLVEAKPVTGRTHQIRVHCQHA 259 Query: 252 GHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRC 311 G PI D +Y D R + GL RLFLHAA+L F + +EA + L+R Sbjct: 260 GFPILGDAKYADEAAVRIADK--LGLKRLFLHAASLNFR--LDDQNYSLEAGLPTELERL 315 Query: 312 LQKL 315 L + Sbjct: 316 LDAI 319 >UniRef50_A4J9H9 Pseudouridine synthase n=2 Tax=Clostridiales RepID=A4J9H9_DESRM Length = 320 Score = 313 bits (803), Expect = 6e-84, Method: Composition-based stats. Identities = 86/306 (28%), Positives = 145/306 (47%), Gaps = 24/306 (7%) Query: 12 AITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPV 71 I+ + G ++N+L+ L I ++ R+ + +N K + + KL A D + I + Sbjct: 30 KISQEHEGFTVENYLKNIL-QYSGRKIQKLTRRKGILLNGKTVYLQKKLNAEDTLSILDL 88 Query: 72 RVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR 131 E V P A +LYEDD +LVLNKP+ VH + G + A Sbjct: 89 ---EDTNYGVQPEKG-----AIEVLYEDDFLLVLNKPAHQLVHPTGQTTRGTMANYLAYY 140 Query: 132 PEARFL----ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 + R + VHRLDR+TSG ++ AK + L +QL+E+ +++ Y ALV+G Sbjct: 141 LKQRNVVSAIRPVHRLDRETSGCVIFAKDSRSQFILEQQLKERTLKRTYWALVKGIVHPP 200 Query: 188 VKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVH 247 ++ AP+ + + R +++ G+ S T ++ + +L++ + TGRTHQIR+H Sbjct: 201 SGTIDAPIGPHPSLANRR--AINEHGEQSITHYQTLRSFPEISLLKLNLDTGRTHQIRLH 258 Query: 248 TQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEG 307 + G+PI D YG R +NR LHA + F H + + AP+ Sbjct: 259 LAHLGYPIIGDRMYGVR---------SPWINRQALHAYDVSFRHLKENHEIAVHAPLPTD 309 Query: 308 LKRCLQ 313 + + Sbjct: 310 FAQAIN 315 >UniRef50_A5IZB6 Pseudouridine synthase n=4 Tax=Mycoplasma RepID=A5IZB6_MYCAP Length = 305 Score = 313 bits (803), Expect = 6e-84, Method: Composition-based stats. Identities = 76/303 (25%), Positives = 136/303 (44%), Gaps = 35/303 (11%) Query: 20 QRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKR--IKPEYKLEAGDEVRIPPVRVAERE 77 +RID ++ + ++ ++ + V V+ ++ KP Y + G + + + E Sbjct: 10 ERIDKYISDN-SEITRNDAKALIEQEAVYVDDRKFVRKPNYMVREGMVITVLRLLEKESN 68 Query: 78 EEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEAR-- 135 EAV + I YED+++L+LNKPSG VH G + + Sbjct: 69 IEAV--------DMPLDIRYEDEYLLILNKPSGLVVHPAPGHLNDTLVNALMYHFKNNLS 120 Query: 136 ------FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVK 189 L +VHR+D+DTSG+L++AK L + L+ +++ YLA+ G + Sbjct: 121 DANGLLRLGIVHRIDKDTSGLLIIAKDNETHNELAKMLKNHQIKRTYLAICEGILPNKTT 180 Query: 190 SVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERY----AFATLVRCSPVTGRTHQIR 245 + P+ ++ +++ + ++GK S T + + + +LV+C TGRTHQIR Sbjct: 181 KINLPIQRDTKN--RKLMSIHKDGKSSVTYVHMLKSFYIDNKPYSLVKCELETGRTHQIR 238 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMD 305 VH Y HP+ D YG + LHA L F HP +++ + + + Sbjct: 239 VHLAYIKHPVYGDSIYGKSVDEFN----------QRLHAYKLSFMHPVINKLIEVYSDIP 288 Query: 306 EGL 308 + Sbjct: 289 KEF 291 >UniRef50_D2M2K8 Pseudouridine synthase, RluA family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2M2K8_BACS4 Length = 298 Score = 313 bits (802), Expect = 7e-84, Method: Composition-based stats. Identities = 80/310 (25%), Positives = 135/310 (43%), Gaps = 24/310 (7%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRIL-RKGEVRVNKKRIKPEYKLEAGDEVRIP 69 I G+ + ++LR + K + + + I G++ VN K Y L GD + + Sbjct: 8 WVIDNAATGKLLRDYLREE-KQISRKALADIKFNGGQITVNGKEENVRYTLRLGDVIEVI 66 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGL-SFGVIEGLR 128 + K + I++ED+H++++NKP + + Sbjct: 67 FPKEKVSRS-------IKPYKIKLHIIFEDEHVIIINKPPHLPTIPTRNEGEPSLAGAIL 119 Query: 129 ALRPEARFL---ELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 A E V RLDRDTSG+++VAK R + + +++ Y+ALV G Sbjct: 120 AYYIENGIPSTFHAVSRLDRDTSGLVMVAKHRYMHDLCVKLQKSYEIKRSYVALVEGILS 179 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIR 245 ++ P+ + ER V ++ GK + T ++V +RY+ ATL++ + TGRTHQIR Sbjct: 180 DDYNTIDLPISRKTTSIIEREV--NEFGKSAITHYEVLKRYSGATLLQLTLETGRTHQIR 237 Query: 246 VHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMD 305 VH GHP+ D YG ++R LH+ L F HP P+ Sbjct: 238 VHMSAIGHPLLGDTLYGG---------DVRYIDRQALHSHQLSFFHPINKREYTFHCPIP 288 Query: 306 EGLKRCLQKL 315 + ++ + K Sbjct: 289 DDIEDAMSKF 298 >UniRef50_A8F4Z7 Pseudouridine synthase n=2 Tax=Thermotogaceae RepID=A8F4Z7_THELT Length = 294 Score = 313 bits (802), Expect = 7e-84, Method: Composition-based stats. Identities = 104/311 (33%), Positives = 161/311 (51%), Gaps = 26/311 (8%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRI-KPEYKLEAGDEVRI 68 ++I + + +R+D FLR +LK VP S IY++LR G V+VN K + KP +L GD+V I Sbjct: 7 ELSINEENSYRRLDKFLRNELKAVPLSEIYKLLRTGCVQVNGKTVRKPYTELYVGDKVTI 66 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 R+++ + L ILYEDD++L+LNK +G +H + Sbjct: 67 KADLAVYRQKKDLP-----SIPLKLDILYEDDNLLILNKKAGITIHPSEKTRSTTLIQGL 121 Query: 129 ALRP--EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 + LVHRLDRDTSGVL++AK R+L R + ++K+Y+ LV G+ Sbjct: 122 HFYGAKKGFKPHLVHRLDRDTSGVLVIAKNVKTARTLSHMFRNRLVKKEYITLVSGKI-F 180 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 + PL +G + T +KV E + +L+R TGRTHQIR Sbjct: 181 GDGFIDKPL----------------DGSEALTEYKVLENFRDTSLLRVILHTGRTHQIRK 224 Query: 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDE 306 H G+P+ D YGD++ + +L + L R FLH + FT+P V+ I+AP+ + Sbjct: 225 HFALIGNPVVGDILYGDKKVN-ELFKKKHNLRRQFLHCIRISFTNPSEPGVISIKAPLPD 283 Query: 307 GLKRCLQKLRN 317 L+R ++ L+ Sbjct: 284 DLERVIKGLKK 294 >UniRef50_A4J1I1 Pseudouridine synthase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1I1_DESRM Length = 303 Score = 312 bits (801), Expect = 9e-84, Method: Composition-based stats. Identities = 85/313 (27%), Positives = 143/313 (45%), Gaps = 24/313 (7%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + + A + G+ + +FL+ K + + ++ +GE+ N ++ + GD+V + Sbjct: 10 LCVEASQNGKFLRDFLKH--KDISDRALKKLRNEGEILCNGAKVTWRTIVNTGDKVVLIY 67 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 L I+ ED+ I ++NK G VH G + Sbjct: 68 PIPPRN-------QYLPPEPLDLSIISEDEDIALVNKQPGMCVHPTLAYPSGTLANGLVY 120 Query: 131 R----PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 A V+R+DR+TSG++LVAK + + L Q + K + + Y+ALV G+ Sbjct: 121 HWLENNPAPTFHAVNRIDRNTSGLVLVAKNSYSAQKLFLQRKRKQLARSYVALVHGKIVQ 180 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 + PL K ++ +R +S G+ + TRF+V + TL+R P TGRTHQIRV Sbjct: 181 RNGYIDLPLEKCEGKTTKRQ--ISSTGQQALTRFEVLQYITDCTLIRLMPETGRTHQIRV 238 Query: 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDE 306 H + GHP+ D YG + + R LHA + F HP TG M + P+ E Sbjct: 239 HLSHLGHPLVGDTLYGG---------SIAQIGRHCLHADKISFLHPRTGHPMSFQIPLAE 289 Query: 307 GLKRCLQKLRNAR 319 + + + ++ A+ Sbjct: 290 DMLQVITEMGRAK 302 >UniRef50_Q67N67 Pseudouridine synthase n=1 Tax=Symbiobacterium thermophilum RepID=Q67N67_SYMTH Length = 327 Score = 312 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 85/334 (25%), Positives = 140/334 (41%), Gaps = 49/334 (14%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 + G R+ +L +LK + ++++ R G + V+ + + L G+ V + Sbjct: 3 FVVDPSARGLRLSQYLFDRLK-LSRTVVRRAKTSGGILVDGRPARTSLVLAGGEVVEVRV 61 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 + E + ++YED +LV++KP+G VH G + A Sbjct: 62 AQEGRVE----------PEPIPIQVVYEDPWLLVVDKPAGMVVHPVRDYVSGTLANAVAH 111 Query: 131 R----PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 V R+DR+TSG++L AK + L +L + +++ Y+A+V G + Sbjct: 112 HLLRSGSDPVARPVQRIDRETSGLVLFAKDPAVAGLLARELERQKLERRYVAVVEGAVAA 171 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQE-------------------------GKPSETRFK 221 +V P+ + R V G+P+ T ++ Sbjct: 172 DAGTVDRPIRRVWGHPVAREVAEGPRTPEQERLLAEAAAQGRALREDWTAAGQPAVTHWR 231 Query: 222 VEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLF 281 V R+ AT++ TGRTHQIRVH Y GHP+ D+ YG T + R Sbjct: 232 VLRRWPAATMLELRLETGRTHQIRVHMAYLGHPLLGDELYGGSR---------TLIQRQA 282 Query: 282 LHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 LHAA L F HP T E +R AP+ L+ + +L Sbjct: 283 LHAATLAFVHPVTREPVRFTAPLPADLEDLVARL 316 >UniRef50_B3QB01 Pseudouridine synthase n=3 Tax=Rhodopseudomonas palustris RepID=B3QB01_RHOPT Length = 455 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 113/322 (35%), Positives = 161/322 (50%), Gaps = 13/322 (4%) Query: 2 KTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLE 61 V+ V +TADE G R+D FL + G+ S I RI+RKGE+RVN KR + +LE Sbjct: 123 APLPTKVETVTVTADENGMRVDRFLEARFPGLSFSHIQRIVRKGELRVNGKRADSKDRLE 182 Query: 62 AGDEVRIPPVRV--AEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGL 119 G VRIPP+++ + + + L + L+ED +LVLNKP+G AV GGSG Sbjct: 183 EGQSVRIPPLKLDTPKLPGHLSEAEQKTLQTLKAMTLFEDADVLVLNKPAGLAVQGGSGT 242 Query: 120 SFGVIEGLRALRP-EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLA 178 + + + L LR + + LVHR+D++T+G LLVAK R A +L R + +K Y A Sbjct: 243 TRHIDQMLEVLRDAKGQKPRLVHRIDKETAGCLLVAKTRFAATALTGSFRHRSARKIYWA 302 Query: 179 LVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGK----PSETRFKVEERYA-FATLVR 233 LV G + + L K + I+RV++ G + T + V E V Sbjct: 303 LVAGVPKPKQGRISTYLAKEESEDD-SIMRVAKHGDDGASHAVTYYAVVETSGQKLAWVS 361 Query: 234 CSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPG 293 PVTGRTHQ+R H + GH I D +Y G NRL L A + HP Sbjct: 362 LKPVTGRTHQLRAHMAHIGHAIVGDPKY---FNIENWQLPGGLQNRLHLLARRIVIPHPR 418 Query: 294 TGEVMRIEAPMDEGLKRCLQKL 315 G V+ + AP+ + + L Sbjct: 419 GG-VIDVSAPLPPHMLQSWNLL 439 >UniRef50_A8Z5T0 Pseudouridine synthase n=3 Tax=Candidatus Sulcia muelleri RepID=A8Z5T0_SULMW Length = 337 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 90/306 (29%), Positives = 154/306 (50%), Gaps = 19/306 (6%) Query: 21 RIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEA 80 RID +L+ L ++ I +I+ KG V VN IK Y ++ D + I + Sbjct: 38 RIDTYLKFILHKKNRNFIQKIIEKGFVYVNNILIKKNYIVKINDVIEIFLPEGKKN---- 93 Query: 81 VSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF-GVIEGLRALRPEARFLE- 138 L I YED++++++NK SG VH G G +I GL + + + Sbjct: 94 -----IIPENLKINIFYEDEYVIIINKQSGLVVHPGKGNESMTLINGLHFYFLKKKNIYN 148 Query: 139 ----LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAP 194 LVHR+D+ TSG++LVAK ++ L +++Q +++ Y+ LV G +++ ++ Sbjct: 149 KIPILVHRIDKGTSGLILVAKDKNILEKIYKQFYINHIKRKYITLVWGYIKNNKGTIICN 208 Query: 195 LLKNILQSGERIVRVSQ-EGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGH 253 + +++ V + GK S T +KV ER+ + TL++C+ TGRTHQIRVH +Y GH Sbjct: 209 IGRSLKNRIYMNVFPNGIYGKFSITHYKVLERFKYVTLLKCTLETGRTHQIRVHLKYIGH 268 Query: 254 PIAFDDRYGDR---EFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKR 310 PI D YG + + + + + LHA +++ HP + P+ + +K Sbjct: 269 PILNDKDYGGNHTFKEKKNIKKLFINMKYQALHAYYIEYIHPIYRKKNYFICPIPDRIKF 328 Query: 311 CLQKLR 316 ++ LR Sbjct: 329 LIKNLR 334 >UniRef50_C7MES4 Pseudouridine synthase, RluA family n=5 Tax=Actinomycetales RepID=C7MES4_BRAFD Length = 318 Score = 311 bits (797), Expect = 3e-83, Method: Composition-based stats. Identities = 126/313 (40%), Positives = 190/313 (60%), Gaps = 11/313 (3%) Query: 5 TPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGD 64 + + + + + AG+R+D FLR+++KGVP +++R+LR+G++RVN ++ + Y+L+AGD Sbjct: 12 SEPARTLIVDVEHAGRRLDKFLRSRVKGVPAGLLFRLLRQGKLRVNGRKAQQNYRLQAGD 71 Query: 65 EVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVI 124 E+ +P +R+ + + L L+ED+ +L+++KP+G AVH G+ + GVI Sbjct: 72 EITVPALRIDADAAPPPAVPPALIQQLRGTALHEDEDLLIIDKPAGVAVHRGTDVPAGVI 131 Query: 125 EGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREK--GMQKDYLALVRG 182 + LR LRPE LEL+HRLDR TSGVL +AK S LR LH+ LR++ +++ YLALV G Sbjct: 132 DALRQLRPELPDLELIHRLDRSTSGVLALAKSPSMLRYLHDLLRDREDEIERRYLALVAG 191 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAF-ATLVRCSPVTGRT 241 W + + APL + + V V +G+ +ET V +R+ ATL+ +TGR Sbjct: 192 HWPAETTILDAPLRREENR-----VVVDPDGQRAETHVAVAQRFGNRATLLEVRLLTGRK 246 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVH Q+AGHPIA DDRYGD F+R A G L LHAA L P G + + Sbjct: 247 HQIRVHLQHAGHPIAGDDRYGDDAFNR--RAASLGGTGLHLHAAELVIPRP-DGTTLAVT 303 Query: 302 APMDEGLKRCLQK 314 AP ++ L+ Sbjct: 304 APTPRRWEQLLRA 316 >UniRef50_B0S119 Pseudouridine synthase n=2 Tax=Finegoldia magna RepID=B0S119_FINM2 Length = 307 Score = 310 bits (795), Expect = 5e-83, Method: Composition-based stats. Identities = 78/314 (24%), Positives = 136/314 (43%), Gaps = 27/314 (8%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 + I R+D FL ++ + +S I + + +V VN K K YKL + D+++ Sbjct: 2 IYEFLIDDSNQNTRLDVFLANEV-ELSRSEIQKFIEDKKVLVNYKPQKKNYKLNSNDKIK 60 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGL 127 + + + ++YEDD++ ++NK VH + + Sbjct: 61 FDYEKEDK---------TIRAQKHDLDVVYEDDYLAIINKDKDVIVHPTETIYSDTLVNY 111 Query: 128 RALRP-------EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALV 180 +VHRLD+DT+G++++AK L E ++ + K YL +V Sbjct: 112 LMYNFKNLSDVDGDYRRGIVHRLDKDTTGLIIIAKDNDTHLKLKEIIKNHEIIKTYLCIV 171 Query: 181 RGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGR 240 G+ +++ + +N + +V S EGK S ++++ + +LV+ TGR Sbjct: 172 HGKIDE-SGTIKEYMTRNPKDRKKMMV--SDEGKLSISQYERLDYNDDYSLVKVQIKTGR 228 Query: 241 THQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRI 300 THQIRVH Y HPI D YG L + + LHA L+F HP T E + + Sbjct: 229 THQIRVHMNYIHHPILGDKLYG-------LKKEKILFDSQVLHAYNLQFIHPQTHEKINV 281 Query: 301 EAPMDEGLKRCLQK 314 + ++K Sbjct: 282 IGKLKPDFMTAIEK 295 >UniRef50_C5RBB6 23S rRNA pseudouridylate synthase RluD n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBB6_WEIPA Length = 305 Score = 309 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 98/305 (32%), Positives = 139/305 (45%), Gaps = 25/305 (8%) Query: 14 TADEAGQRIDNFLRTQLKGVPKSMIYRILRKG-EVRVNKKRIKPEYKLEAGDEVRIPPVR 72 ++ RI FL + GV M I R G +V +N + ++ +E GD V + Sbjct: 8 NQSDSTLRIKTFLAQR--GVSHRMFAIIKRGGGQVLLNHRPVRTLDDVEPGDLVEVKMPA 65 Query: 73 VAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG-----L 127 A S L ILYED++ LV++K +G G + L Sbjct: 66 EKSNAIVAAS-------DLPIKILYEDENWLVVDKVAGVTSVPGKADRETTMVNRVKGYL 118 Query: 128 RALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 + E +V RLDR TSGV L+AK R A L +QL+ + K Y A+V G Sbjct: 119 ISEGAEDLVPHVVTRLDRFTSGVALLAKHRFAHGLLDKQLQTHTVDKRYYAIVDGIVPDD 178 Query: 188 VKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVH 247 + AP+ + R VR +G+PS+T + V R TLV+ TGRTHQIRVH Sbjct: 179 HGFIDAPIGRMDNDFIRREVRA--DGRPSQTEYWVVNRMPNQTLVKVQLHTGRTHQIRVH 236 Query: 248 TQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEG 307 +Y GHP+ D+ YG G+ R LHA L+F P + I++P+ E Sbjct: 237 FKYIGHPLIGDEIYGG--------PMDRGIERQALHAYWLEFYDPFSEIKRHIQSPLPED 288 Query: 308 LKRCL 312 LK+ L Sbjct: 289 LKQIL 293 >UniRef50_D2ELJ1 Pseudouridine synthase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2ELJ1_PEDAC Length = 301 Score = 309 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 83/306 (27%), Positives = 144/306 (47%), Gaps = 23/306 (7%) Query: 15 ADEAGQRIDNFLRTQLKGVPKSMIYRIL-RKGEVRVNKKRIKPEYKLEAGDEVRIPPVRV 73 DE+ Q + FL K + ++++ I G++ VN++ + + AGD+V + Sbjct: 8 QDESPQHLRTFLTR--KRISRALLKSIKFNGGKILVNEQPKRTNEMVTAGDQVTVELPPE 65 Query: 74 AEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTA-VHGGSGLSFGVIEGLRALR- 131 S ++YED LV+NKP V + ++ ++ Sbjct: 66 PGNPHVVRSRQ-------PIDVIYEDQDYLVVNKPPFLPTVQSARNQTDTLVNRVKNYYA 118 Query: 132 ---PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHV 188 E++ + +V RLD+DTSG++L AK+R A + + LR+ +QK YLA+ G++ Sbjct: 119 ERDYESQVVHVVTRLDQDTSGLVLFAKRRFAHTIMDQDLRQHRVQKYYLAMATGRFAQSH 178 Query: 189 KSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHT 248 + AP+ ++ +R V + GKPS+T + V E+ +L++ TGRTHQIRVH Sbjct: 179 GLIDAPIERDPASFIKRRVASAGNGKPSKTEYWVLEQTDTDSLLKVQLHTGRTHQIRVHF 238 Query: 249 QYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGL 308 HP+ D Y + L R LH +LKF + G+ + ++AP+ + Sbjct: 239 SELHHPLIGDPLYN--------ETSFRSLQRQALHCFSLKFENVFRGKKIDVQAPIPNDM 290 Query: 309 KRCLQK 314 +K Sbjct: 291 LEYWKK 296 >UniRef50_O31613 Uncharacterized RNA pseudouridine synthase yjbO n=53 Tax=Bacillaceae RepID=YJBO_BACSU Length = 283 Score = 309 bits (793), Expect = 8e-83, Method: Composition-based stats. Identities = 85/287 (29%), Positives = 130/287 (45%), Gaps = 23/287 (8%) Query: 32 GVPKSMIYRILRKGE-VRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAA 90 G+ K ++ I G +++N + + +Y L+ GD + + E Sbjct: 11 GISKRLLTDIKFGGGDLQINGEHVTVKYVLKEGDLLIVKFPEEQVSE-------TLLAEP 63 Query: 91 LADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFL----ELVHRLDRD 146 + ILYED+H+LV+NK + G I + + LV RLDRD Sbjct: 64 VPLDILYEDEHVLVINKQPYVSSIPSREHPSGSIANGIIDHYQTTGVRATVHLVTRLDRD 123 Query: 147 TSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERI 206 TSG++LVAK R A L + +++ Y A+V G+ +V AP+ ++ ER Sbjct: 124 TSGIMLVAKHRFAHSILSSAQKNGLVKRRYAAVVHGRMAQMEGTVDAPIGRHPDSIIERT 183 Query: 207 VRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREF 266 V + +G+ + T F V T V TGRTHQIRVH Y GHP+ D YG Sbjct: 184 V--TPDGQKAVTHFYVTCANDDMTSVALQLETGRTHQIRVHMSYLGHPLCGDTLYGGTRQ 241 Query: 267 DRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQ 313 + + R LH+ L F HP T E MR AP+ + + + ++ Sbjct: 242 E---------IGRQALHSEHLSFIHPLTQENMRFHAPLPQDMSKLIK 279 >UniRef50_A8RHQ2 Pseudouridine synthase n=2 Tax=Clostridium RepID=A8RHQ2_9CLOT Length = 287 Score = 309 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 84/302 (27%), Positives = 136/302 (45%), Gaps = 26/302 (8%) Query: 17 EAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVAER 76 E G + FL+ KG + RI + V+ Y+L+ G V + + Sbjct: 2 EDGIVLGQFLKA--KGFSHRLAVRIKAAQGLAVDGIAAYAGYRLKTGQTVEVTLPEEEDS 59 Query: 77 EEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR----P 132 L I+YED+ ILV+NK +G +H G + + Sbjct: 60 GN-------IVPVKLPLSIVYEDEDILVINKDAGVPIHPSQGHYDNTLANAVSWYFHEKG 112 Query: 133 EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQ 192 EA +++RLDRDT+G+L++A+ + L EQ+ + ++++Y A+V G +V Sbjct: 113 EAFTYRVINRLDRDTTGLLVLARHMLSACILSEQMTGRRIRREYRAIVLGH-TPEEGTVD 171 Query: 193 APLLKNILQSGERIVRVSQEGKPSETRFKVEERY--AFATLVRCSPVTGRTHQIRVHTQY 250 +P+ + + ER V + G+ + T F+ +LV S TGRTHQIRVH + Sbjct: 172 SPIARAEGSTIERRVD-HETGERAVTHFRTLLYNEEKDLSLVSLSLETGRTHQIRVHMRS 230 Query: 251 AGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKR 310 GHP+ D Y ++R LH+ L+F HP TG+ M A + E +K+ Sbjct: 231 IGHPLPGDFLY---------CPDYRYIDRQPLHSYLLRFEHPITGKEMEFTAGLPEDMKQ 281 Query: 311 CL 312 L Sbjct: 282 LL 283 >UniRef50_Q63E77 Pseudouridine synthase n=73 Tax=Bacillaceae RepID=Q63E77_BACCZ Length = 307 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 85/316 (26%), Positives = 149/316 (47%), Gaps = 26/316 (8%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 + + A G I++ L+ + +PK +++++ + V VN ++ + L+ GD++++ Sbjct: 11 EMTVPAKWNGISIESLLKIEW-EIPKKLLHQLRMEKGVTVNGEQRRWNELLKEGDKLQVH 69 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 E + + ++YEDDH+L++NKP H G + L A Sbjct: 70 MFMEEEYD--------VEPEYGELHVVYEDDHVLIVNKPEKMDTHPSEKGGMGTLANLVA 121 Query: 130 LRPE----ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 + + +HRLD+DT+G ++ AK R A + L E+ +++ Y ALV G+ + Sbjct: 122 FHFQMQGLETKVRHIHRLDKDTTGGVVFAKHRIAGAIMDRLLMERKIKRTYAALVEGKVK 181 Query: 186 SHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYA--FATLVRCSPVTGRTHQ 243 ++ A + ++ + R RVS +G + T +KVEE + TLV TGRTHQ Sbjct: 182 KKQGTIDAAIGRDRHHATRR--RVSPKGDQAITYYKVEEYFKKQNVTLVTLQLETGRTHQ 239 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 IRVH Y G+P+ D YG ++R LHA + F HP T E + ++ P Sbjct: 240 IRVHMSYNGNPLVGDVLYGGG---------TKYMSRQALHAMKINFLHPITKEEIEVDVP 290 Query: 304 MDEGLKRCLQKLRNAR 319 L ++ + Sbjct: 291 FPTKLNDTMKAFQRVN 306 >UniRef50_Q0ANT2 Pseudouridine synthase n=2 Tax=Hyphomonadaceae RepID=Q0ANT2_MARMM Length = 330 Score = 308 bits (791), Expect = 2e-82, Method: Composition-based stats. Identities = 90/318 (28%), Positives = 149/318 (46%), Gaps = 14/318 (4%) Query: 6 PSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDE 65 V+ + + A E G R+D + + + V M+ ++ RKG++RV+ R+K + ++ G E Sbjct: 2 SGVQTIKVEATEDGSRVDRWFKRRFPHVSAIMVQKLCRKGQIRVDGGRVKGDSRVHEGQE 61 Query: 66 VRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIE 125 +RIPP+ + +A + +++Y+DD ++ NKP+G AV GGS + + Sbjct: 62 IRIPPLPEPGERPPVNRMSDEDIAYVKSLVIYQDDELIAFNKPAGLAVQGGSKTTRHLDG 121 Query: 126 GLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQ 185 L A LVHRLD+DTSG+L+V K A L + + +K Y A+ G + Sbjct: 122 MLDAFGEGLDRPRLVHRLDKDTSGILIVGKGPKATARLAKAFQSHKTRKTYWAIAIGVPK 181 Query: 186 SHVKSVQAPLLK---NILQSGERIVRV----SQEGKPSETRFKVE-ERYAFATLVRCSPV 237 + ++ + K + + S + + + + TR+ V E A+ V PV Sbjct: 182 PKMGEIKGFMRKAAASGVDSERETMVAAGHGDEGAQHALTRYVVIGEAGQKASWVALRPV 241 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQ+RVH G I D +Y RL LHA L+ P G+ Sbjct: 242 TGRTHQLRVHLAAMGTAILGDKKY-----TCHRPAPEDLGRRLCLHARRLEIPRP-GGKP 295 Query: 298 MRIEAPMDEGLKRCLQKL 315 + + A + LK+ L Sbjct: 296 LVLTADLPPALKKIYDTL 313 >UniRef50_A8IAL9 Pseudouridine synthase n=2 Tax=Xanthobacteraceae RepID=A8IAL9_AZOC5 Length = 384 Score = 308 bits (789), Expect = 3e-82, Method: Composition-based stats. Identities = 101/349 (28%), Positives = 154/349 (44%), Gaps = 46/349 (13%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 V++ +T DEA R+D + +T + + +++R G+VRV+ R+K +L G VR Sbjct: 25 VELKQVTEDEADMRLDRWFKTHFPDLSFGHLQKLVRTGQVRVDGGRVKTSTRLSPGQSVR 84 Query: 68 IPPV------------------------------------RVAEREEEAVSPHLQKVAAL 91 +PP+ A + A L Sbjct: 85 VPPLGDDAAPAASPAQSKTKGEGAVAGEEGGFAGSGSPFAPAAHQVRAAARREQTDAEFL 144 Query: 92 ADVILYEDDHILVLNKPSGTAVHGGSG---LSFGVIEGLRALRPEARFLELVHRLDRDTS 148 +IL+ED +LVLNKPSG AV GGSG G+++ LRA + + LVHR+D+DT+ Sbjct: 145 RSIILFEDKDVLVLNKPSGIAVQGGSGTFRHIDGMLDALRA--KDGQKPRLVHRIDKDTA 202 Query: 149 GVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVR 208 G LL+AK R + L + R + +K Y ALV G + + L + + R+ R Sbjct: 203 GCLLIAKNRLSAAQLAKNFRSREARKIYWALVPGVPKPRQGRISTYLAREEAEERMRVAR 262 Query: 209 V-SQEGKPSETRFKVEER-YAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREF 266 ++ + T + V E + + PVTGRTHQIR H + HPI D +Y Sbjct: 263 HGEEDASHAVTYYAVVEHAAQKMSWLSLKPVTGRTHQIRAHLAHIHHPIVGDPKY---FN 319 Query: 267 DRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 G NRL L A L HP ++ + AP+ + + L Sbjct: 320 IENWELPGGLQNRLHLLARRLVIPHPRGEGMIDVSAPLPPHMAQSWAVL 368 >UniRef50_D1Y726 Ribosomal large subunit pseudouridine synthase D n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y726_9BACT Length = 315 Score = 307 bits (788), Expect = 3e-82, Method: Composition-based stats. Identities = 94/310 (30%), Positives = 142/310 (45%), Gaps = 13/310 (4%) Query: 11 VAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIPP 70 I+ + G+R+D+ LR GVP + + RKG VR+ KR +P ++ G V +P Sbjct: 5 FQISRHDEGRRLDSVLRGMWPGVPLGAMMKYFRKGAVRLEGKRCQPNDRVLEGQHVWVPW 64 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRAL 130 L ++Y D ++V+NKP+G V+ Sbjct: 65 --EEPGTVGRAEMPDGTPRRLPLDVIYSDRCVMVVNKPAGLLSQPDVKGEDSVVTRALGY 122 Query: 131 RPEARFLE-LVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSHVK 189 + F LVHRLDR+TSGV+ +A R+L E + + K Y A+V G+ Sbjct: 123 AVDPEFPPQLVHRLDRNTSGVMALALDGPTTRALMECFKARRADKRYWAIVIGELPER-G 181 Query: 190 SVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRVHTQ 249 + PLLK+ +++VRV +G+ + T +K +L +TGRTHQIRVH Sbjct: 182 RIDVPLLKDAD---KKLVRVDPKGERAVTEYKRLTSSGAFSLAEVHLLTGRTHQIRVHMN 238 Query: 250 YAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFT-HPGT---GEVMRIEAPMD 305 + GHP+ D +YGD QL G+ R LHA +L P E AP Sbjct: 239 HVGHPLLGDVKYGDFGSKGQLR--SLGVKRPMLHARSLTLNGLPAFLSHLEGKTFRAPAP 296 Query: 306 EGLKRCLQKL 315 + L+R ++KL Sbjct: 297 DDLRRVMEKL 306 >UniRef50_B9ZR86 Pseudouridine synthase, RluA family n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZR86_9GAMM Length = 328 Score = 307 bits (788), Expect = 3e-82, Method: Composition-based stats. Identities = 139/318 (43%), Positives = 188/318 (59%), Gaps = 12/318 (3%) Query: 4 ETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAG 63 + +++T GQR+DNFL +LKGVPKS+IYR++RKG +RV+ +R K +L G Sbjct: 10 SPSGPRTLSVTERGDGQRLDNFLLRELKGVPKSLIYRLVRKGAIRVDGRRAKVTQRLSVG 69 Query: 64 DEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGV 123 EVR+P + E E + P + + L IL+EDD +LVL+KPSG AVHGGSGL+FG+ Sbjct: 70 SEVRVPDLDRPEAVERDIPPGV--LDRLRRSILHEDDQVLVLDKPSGLAVHGGSGLAFGI 127 Query: 124 IEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 IE +R LRP + LEL HRLDR+TSG LL+AK RS L+ H LRE ++K YLAL G Sbjct: 128 IEAMRQLRPGSE-LELGHRLDRETSGCLLLAKSRSGLQDFHAALREGRVEKRYLALQVGA 186 Query: 184 WQSHVKSV-QAPLLKNILQSGERIVRVSQEGKP-----SETRFKVEERYAFATLVRCSPV 237 + S V P+ + G+R +R ++ P + ++F ERY L Sbjct: 187 FPSDQPIVCDEPIASSRGPDGKRRMRAGEDADPESARSAISQFVPLERYGSFQLAEVRIG 246 Query: 238 TGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEV 297 TGRTHQIRVH Q GHP+ D YG + +R L G GL RLFLHA AL++ + E Sbjct: 247 TGRTHQIRVHGQAIGHPVGGDHDYGLPDANRVLR--GAGLKRLFLHAQALQYEDSAS-ES 303 Query: 298 MRIEAPMDEGLKRCLQKL 315 AP+ + L+ L L Sbjct: 304 HVYSAPLPDELQSILDAL 321 >UniRef50_B8I750 Pseudouridine synthase, RluA family n=2 Tax=Clostridium RepID=B8I750_CLOCE Length = 299 Score = 307 bits (788), Expect = 3e-82, Method: Composition-based stats. Identities = 80/316 (25%), Positives = 147/316 (46%), Gaps = 24/316 (7%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVR 67 + I+ +EA + + + L+ LK + + +I ++ + ++ VN+ + Y ++A D ++ Sbjct: 2 ILERIISENEARKTLKHVLKNGLK-LSERLIRKLKLQQKIYVNEHPERVNYIVKADDRLK 60 Query: 68 IPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG- 126 + E E + + ++YED+ +LVLNK SG VH S I Sbjct: 61 VILDLEEECEH-------IEPQDIPLDVIYEDECMLVLNKQSGIVVHPTSYHPDNTIANG 113 Query: 127 ---LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 + + + V RLDR+TSG+++ AK + L +Q+ +K+YL +V+G Sbjct: 114 IVYYLKQKGVTKKVRPVSRLDRETSGIIIFAKNQFTQEMLIQQMHNNLFKKEYLGIVQGI 173 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFA--TLVRCSPVTGRT 241 Q++ ++ P+ + + +S+EG PS T +K+ + + L+ TGRT Sbjct: 174 PQNNEGTINLPIARKPGSI--MLRHISEEGAPSITHYKILKTFPSHNSALLSFKLETGRT 231 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVH + G PI D Y D ++R LH+ + HP T + + + Sbjct: 232 HQIRVHCKAMGFPIYGDTLYSDN--------TNLFISRQALHSYRTEIIHPVTLKGVIFK 283 Query: 302 APMDEGLKRCLQKLRN 317 A + + L+ L Sbjct: 284 AELPSDISGLLEILSK 299 >UniRef50_B1XXM0 Pseudouridine synthase n=6 Tax=Burkholderiales RepID=B1XXM0_LEPCP Length = 369 Score = 307 bits (787), Expect = 4e-82, Method: Composition-based stats. Identities = 87/312 (27%), Positives = 139/312 (44%), Gaps = 39/312 (12%) Query: 12 AITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYK-LEAGDEVRIPP 70 + A G+R+D +L ++ + ++ G VR ++ ++ +K + AG ++ + Sbjct: 44 VVEAAAHGERLDKWLVRIAPEFSRAHLQGLVEGGHVRCGEQVLRQSHKKVMAGQQIEVAL 103 Query: 71 VRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG---- 126 A+ A+ +++ED H+LV++KP+G VH +G G + Sbjct: 104 WPTAQSTAFR-------AEAMTLAVVHEDAHLLVIDKPAGLVVHPAAGHWSGTLLNGLLA 156 Query: 127 LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQS 186 A +VHRLD+DTSG++LVAK A +L + + ++++YLALV G Sbjct: 157 HHAAAAHLPRAGIVHRLDKDTSGLMLVAKSLQAHTALVRAIAARDVKREYLALVHGAVMD 216 Query: 187 HVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVE----------ERYAFATL----- 231 ++ + APL ++ + + S GKP+ T + + AT Sbjct: 217 GLQVIDAPLGRDPVSRVRMAIVAS--GKPARTDVRRLAVAELPGDGVRQLPGATRAPRQV 274 Query: 232 --VRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKF 289 V C TGRTHQIRVH GHP+ D YG GL R LHAA L Sbjct: 275 SAVHCQLHTGRTHQIRVHLASRGHPLLADAMYGG--------APAFGLQRQALHAARLHL 326 Query: 290 THPGTGEVMRIE 301 HP G + E Sbjct: 327 LHPIDGRPLAFE 338 >UniRef50_C8PT91 Ribosomal large subunit pseudouridine synthase D n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PT91_9SPIO Length = 326 Score = 307 bits (787), Expect = 4e-82, Method: Composition-based stats. Identities = 79/333 (23%), Positives = 134/333 (40%), Gaps = 42/333 (12%) Query: 10 IVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRIP 69 + R+D F + L + +S + ++ V +N ++ K ++AGD +++ Sbjct: 6 EFKVPDGTGKLRLDAFCSSVLPNMTRSRLKTGMQS--VELNGRQAKLSSSVQAGDRIKLM 63 Query: 70 PVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRA 129 SP + ILYED+ ++ +NK G H +G G + A Sbjct: 64 --------WNNPSPDFLIPEHIPLQILYEDNDVIAVNKRVGMVTHPAAGNWTGTLVQALA 115 Query: 130 LR------------------------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHE 165 + +VHRLD+DTSGVL+ A+ +A L + Sbjct: 116 YYRLHTSPIHDKFAGLLEAEQGRGNFEDLLRAGIVHRLDKDTSGVLITARSAAAEAFLKD 175 Query: 166 QLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVS-QEGKPSETRFKVEE 224 + + + +K Y A++ G + ++ + ++ +GK + +R+KV Sbjct: 176 EFKMRRTEKYYAAILNGVPEKRTGVIETSVFRDEHSRIRFTASADLAKGKYARSRYKVLR 235 Query: 225 RYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHA 284 Y LV TGRTHQIR+H ++ G PI D YG +E + + + LHA Sbjct: 236 VYGRYALVLFKIDTGRTHQIRLHARFIGCPIVGDPLYGKKEAEWKPY-------GMMLHA 288 Query: 285 AALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRN 317 L P T E AP+ + L LR Sbjct: 289 YRLCVALPSTREKTVFTAPLPRRFQTVLHLLRT 321 >UniRef50_B5Y8D7 Pseudouridine synthase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8D7_COPPD Length = 315 Score = 307 bits (787), Expect = 5e-82, Method: Composition-based stats. Identities = 90/325 (27%), Positives = 143/325 (44%), Gaps = 32/325 (9%) Query: 1 MKTETPSVKIVAITADEAGQRIDNFLRTQL--KGVPKSMIYRILRKGEVRVNKKRI-KPE 57 M E V + + R+D L + +G+ ++ I ++ G VR N + KP Sbjct: 1 MGNEADRVITGIVQQEA---RLDLALMEIIDDEGISRTWIQNNIKAGLVRCNGDVVTKPS 57 Query: 58 YKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGS 117 +++ GD + I + A + ++Y D+H+ V++KP VH Sbjct: 58 LRVKKGDLLEIRL---------RSRISELQPADVEYSVVYYDEHLAVIDKPPNLVVHPAP 108 Query: 118 GLSFGVI-EGLRALRPE------ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREK 170 + + GL P+ A +VHRLD+DTSG++LVA L + + EK Sbjct: 109 SVKGLTLCHGLLKDFPQVKNVGSAERPGIVHRLDKDTSGLMLVALSEKGYAGLTKMISEK 168 Query: 171 GMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFAT 230 + + YL V G + V AP+ ++ V GK + TRF+ + + Sbjct: 169 SVSRKYLVAVYG-VANRPFEVDAPIGRDPRNPTRMAVV--PHGKNAYTRFRPVQCLEKVS 225 Query: 231 LVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFT 290 L+ TGRTHQIRVH +AG + D YG+ E+ R+FLH+ L+ Sbjct: 226 LLEAELFTGRTHQIRVHLSHAGFYVLGDPVYGN-------VESRLLAPRVFLHSYYLELE 278 Query: 291 HPGTGEVMRIEAPMDEGLKRCLQKL 315 HP TGE + +P+ E L C L Sbjct: 279 HPITGERLFFVSPLPEDLDECWHIL 303 >UniRef50_A9GBV3 Pseudouridine synthase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GBV3_SORC5 Length = 345 Score = 306 bits (786), Expect = 5e-82, Method: Composition-based stats. Identities = 81/335 (24%), Positives = 135/335 (40%), Gaps = 38/335 (11%) Query: 11 VAITADEAGQRIDNFLRTQL----KGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEV 66 + + R+D + L ++ + R + G V V+ + + + A V Sbjct: 12 FRVDDGDPRDRLDKLVVHLLERAGHAASRAAVQRWIAAGRVLVDGEPARASVAVRASALV 71 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 + P + ++YED+H+LV++KP+G VH G + G + Sbjct: 72 EVRPEE-------PSPSPTAAEPDVVIPVVYEDEHLLVIDKPAGLVVHPARGHASGTLVN 124 Query: 127 LRALRPE-------------ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQ 173 P +VHRLDR TSG+L+VAK +L ++ ++ Sbjct: 125 GLLALPGFALAPADPRDPMGHVRPGIVHRLDRGTSGLLVVAKDEPTREALKDRFARHAIE 184 Query: 174 KDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEG----------KPSETRFKVE 223 ++Y A+V G ++ + ++ + + + T +V Sbjct: 185 REYAAIVAG--EARDATYDTLHGRHPTDRLRFTSWIRGGAGAPGSHVAAPRRAVTHVRVI 242 Query: 224 ERYAFA-TLVRCSPVTGRTHQIRVHTQYAGH-PIAFDDRYGDREFDRQLTEAGTGLNRLF 281 ER A T+V CS TGRTHQIRVH G P+ D YG + L R Sbjct: 243 ERLGDAATVVACSLETGRTHQIRVHLAERGRTPVLGDPLYGKPPKKPAVRAIAEELGRQA 302 Query: 282 LHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLR 316 LHA L F HP T + +R E+ + +++ L +LR Sbjct: 303 LHARVLGFIHPATQKPVRWESALPADMRKALDQLR 337 >UniRef50_Q1D114 Pseudouridine synthase, RluA family n=6 Tax=Cystobacterineae RepID=Q1D114_MYXXD Length = 306 Score = 306 bits (786), Expect = 6e-82, Method: Composition-based stats. Identities = 98/314 (31%), Positives = 149/314 (47%), Gaps = 17/314 (5%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 + V + + AG+R+D FL Q+ G+ ++ G VR+ KR +P KL G+E+ + Sbjct: 4 QKVQVPREAAGERLDRFLSKQVPGINLERARALIDSGAVRIRGKRCQPTRKLWGGEEIEL 63 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 E + + +L++D ++++NKP G V G + V+ L Sbjct: 64 -------ERPEPRAASVAASEGPVLPVLHDDSALVIVNKPPGIVVEP-EGRAASVVGLLA 115 Query: 129 ALRP-----EARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQ 183 A RP +VHRLDR+TSG L A+ +A +L +EK + K Y LV GQ Sbjct: 116 AQRPPFDVEGLAQPGVVHRLDRETSGCLAFARTDTAAAALLRSFQEKRVDKRYWTLVLGQ 175 Query: 184 WQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQ 243 + ++ P ++ RV + + F+V ER+A A L+ TGRTHQ Sbjct: 176 PPA-QGRLEGPYARDPADPRRFTTRV-PSARRAALSFEVRERFADAALLEVDLDTGRTHQ 233 Query: 244 IRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAP 303 +RV AG P+ D YG E + A L R LHA L+ P TG+ +R+EAP Sbjct: 234 VRVQLSEAGFPVLADSLYGPPE--ARAHAAARALGRQALHAFTLELPSPATGQPVRVEAP 291 Query: 304 MDEGLKRCLQKLRN 317 + E +R L LR Sbjct: 292 LPEDFQRALTVLRG 305 >UniRef50_C6VRD0 Pseudouridylate synthase n=4 Tax=Lactobacillus RepID=C6VRD0_LACPJ Length = 300 Score = 306 bits (785), Expect = 8e-82, Method: Composition-based stats. Identities = 87/311 (27%), Positives = 138/311 (44%), Gaps = 25/311 (8%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRIL-RKGEVRVNKKRIKPEYKLEAGDEV 66 ++ I + ++ L GV +S++ ++ G + V+++ + + L G+ V Sbjct: 1 MRFTWINHETTPMKVKTLLAQH--GVTRSLLKKVKFHGGAILVDERPVLAIHMLTGGETV 58 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 + + VS L ILYED L++NKP+G A L + Sbjct: 59 TMVTPAEIGNDHLGVS-------TLPIDILYEDRDYLIVNKPAGVASVPAHALPDNTLAN 111 Query: 127 -----LRALRPEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVR 181 +A + + + RLDRDTSG++L AK A + QL+ M+K YLA+V Sbjct: 112 RVKGYYQAAHYDNEVVHITTRLDRDTSGIVLFAKHHFAHSIIDHQLKAHAMRKMYLAVVS 171 Query: 182 GQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRT 241 G+ + + AP+ + +R R +GKPS T + V +R T+VR TGRT Sbjct: 172 GELTTDHGWLDAPIGRAADSFIKRTTR--PDGKPSLTEYWVVKRLCNMTVVRVRLHTGRT 229 Query: 242 HQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIE 301 HQIRVH +GHP+ D YG + R LH L+F P + + Sbjct: 230 HQIRVHFAASGHPLIGDALYGGPR--------DPWIQRQALHCMRLEFDDPFISQTLTTF 281 Query: 302 APMDEGLKRCL 312 AP+ L R + Sbjct: 282 APLPADLNRLI 292 >UniRef50_B2IK20 Pseudouridine synthase n=2 Tax=Beijerinckiaceae RepID=B2IK20_BEII9 Length = 350 Score = 306 bits (784), Expect = 8e-82, Method: Composition-based stats. Identities = 109/333 (32%), Positives = 165/333 (49%), Gaps = 27/333 (8%) Query: 9 KIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYKLEAGDEVRI 68 K + + DE G R+D + + +L + S + +I+R G+VRV+ R+K +L AG VR+ Sbjct: 4 KTLTVDTDEEGMRLDRWFKRRLPDLSLSHLNKIVRTGQVRVDGARVKTATRLAAGQSVRV 63 Query: 69 PPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLR 128 PP+ + ER E + AL ++IL+ED ++VLNKP G AV GGSG++ + + L Sbjct: 64 PPLDLPERPLEKPAIVSADAQALREMILFEDRDLMVLNKPFGLAVQGGSGMTHHIDKMLA 123 Query: 129 ALRPE-ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH 187 +L E LVHRLDRDTSGVLLVAK R L E R + +K Y A+V G + Sbjct: 124 SLPNERGDRPVLVHRLDRDTSGVLLVAKTRRMAAELGEIFRSRQARKIYWAVVEGVPKPA 183 Query: 188 VKSVQAPLLKNILQSGER--------------IVRVSQEG----KPSETRFKVEERYA-F 228 + L K +R +RV++ G + S T + + ++ Sbjct: 184 QGRISLYLAKGEGMEDKRGPHGRDAEARAGLEKMRVAKHGEEDARHSVTYYAIVDKVPSR 243 Query: 229 ATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYG-----DREFDRQLTEAGTGLNR-LFL 282 + P+TGRTHQ+R H + GHPI D +YG D + G+ R L L Sbjct: 244 LAWLSMKPITGRTHQLRAHAEAIGHPIIGDPKYGLKPKDDPRRNDPNRAIPEGVERKLHL 303 Query: 283 HAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKL 315 A L HP G ++ + AP+ +++ Sbjct: 304 LARRLILPHPRGG-ILDVTAPLPPHMQKTFDLF 335 >UniRef50_B0PEI9 Pseudouridine synthase n=5 Tax=Bacteria RepID=B0PEI9_9FIRM Length = 338 Score = 306 bits (784), Expect = 9e-82, Method: Composition-based stats. Identities = 85/302 (28%), Positives = 150/302 (49%), Gaps = 20/302 (6%) Query: 1 MKTETPS-VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKRIKPEYK 59 MK+ ++ I ++AGQR+D FL + +P+SM+Y+ +R +++N KR + + Sbjct: 10 MKSSLEDVMREFQINGNDAGQRVDKFLTKAVPLLPQSMLYKAIRTKRIKLNGKRCEISTR 69 Query: 60 LEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGL 119 L GD++ + + L+ AA+ I+YED++IL++NKP+G VH Sbjct: 70 LCTGDQLTLYLNDSFFDSRDGAFSFLRSPAAI--DIIYEDENILLVNKPAGLVVHEDEHQ 127 Query: 120 SFGVIEGLRALR-----------PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLR 168 S + + L +R+DR+T+G+++ AK +ALR L+E+++ Sbjct: 128 SSDTLINRIQHHLYNCGVYNPAEENSFAPALCNRIDRNTAGIVIAAKNAAALRILNEKIK 187 Query: 169 EKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVS-QEGKPSETRFKVEERYA 227 + +QK YL +V G +++A L K+ + + +G+ T ++V + Sbjct: 188 ARELQKLYLCIVHGTMPKESDTLKAFLRKDARTNTVAVYDHPIPDGRTILTHYRVVAQKD 247 Query: 228 FATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAAL 287 +L+ +TGRTHQIR H + GHP+ D +YG + + TGL L A L Sbjct: 248 RLSLLEIDLLTGRTHQIRAHLAHIGHPLLGDAKYGRNRDNHK-----TGLKHQALCAYKL 302 Query: 288 KF 289 F Sbjct: 303 TF 304 >UniRef50_C4PNG9 Ribosomal large subunit pseudouridine synthase D n=11 Tax=Chlamydiaceae RepID=C4PNG9_CHLTZ Length = 335 Score = 305 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 86/325 (26%), Positives = 136/325 (41%), Gaps = 28/325 (8%) Query: 3 TETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRKGEVRVNKKR-IKPEYKLE 61 +V I G R+D L + ++ + + G VRVN + + + L Sbjct: 6 PAPTAVFSFVIDEQLTG-RLDKGLVSYNGAYSRAFYQQQIELGRVRVNGRVYTRVSHPLS 64 Query: 62 AGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSF 121 GD V E P + +YEDD ILV+NKP VH G + Sbjct: 65 LGD-------VVEVELIEEEEPSSLIPEDIPLDKVYEDDMILVINKPRDMVVHPAPGHTQ 117 Query: 122 GVIEGLRAL---------RPEAR-FLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKG 171 G + PE +VHRLD+DTSG+L+ K R A E K Sbjct: 118 GTVVHALLHEIGERLKQEFPEEPWRPGIVHRLDKDTSGLLITVKTRRAKALYSELFATKQ 177 Query: 172 MQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIV--RVSQEGKPSETRFKVEERYAFA 229 ++K Y+A+ + + ++ L+ E V ++ GK + T V Sbjct: 178 VKKLYVAICINAPSQE--LIHTRIARHPLKRKEMTVLSTHAEGGKEAITHCHVLATNGRL 235 Query: 230 TLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKF 289 ++V P TGRTHQ+RVH ++ G PI D YG + + GL++ LHA +L F Sbjct: 236 SVVALYPETGRTHQLRVHMKHLGTPILGDPVYGIPSINFRY-----GLDKQQLHAYSLVF 290 Query: 290 THPGTGEVMRIEAPMDEGLKRCLQK 314 HP + E +++ + + + ++K Sbjct: 291 AHPESAERVKLVTKLPDDMTSLIEK 315 >UniRef50_Q8ERS8 Pseudouridine synthase n=2 Tax=Bacillaceae RepID=Q8ERS8_OCEIH Length = 322 Score = 305 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 79/313 (25%), Positives = 133/313 (42%), Gaps = 23/313 (7%) Query: 8 VKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILR-KGEVRVNKKRIKPEYKLEAGDEV 66 + I +E G I +L+ Q+ + ++ + + ++VN YKL+ D + Sbjct: 25 ILRWEIKKNEQGMLIKTYLQ-QIHHFSRRLLISLKKVPSSIQVNGTSQWVTYKLKREDIL 83 Query: 67 RIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEG 126 + L I+YED + LV+NKP+G A + Sbjct: 84 TVALPDEK-------PSDAITPEKLPLDIIYEDAYCLVVNKPAGQACLPSMNHRHNTLAN 136 Query: 127 LRALRPE----ARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRG 182 + + +V RLD +TSG++LVAK + +E + + Y A+V G Sbjct: 137 GLTYYYQKNSIPSTVHIVTRLDVNTSGLVLVAKNQYVHSLFSRMQQEGNINRVYEAIVHG 196 Query: 183 QWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTH 242 + V AP+ + ER V + + GK ++T ++V + A+ V TGRTH Sbjct: 197 EVSPTSGIVDAPIARKEGSIIERTVDM-RNGKYAKTNYRVLYADSIASWVEIKLETGRTH 255 Query: 243 QIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEA 302 QIRVH QY GH + D+ YG + R LH + HP + +++EA Sbjct: 256 QIRVHFQYLGHSLYGDNLYGGSKDIML---------RQALHCKQITMMHPIKNQPIQLEA 306 Query: 303 PMDEGLKRCLQKL 315 + E + L++L Sbjct: 307 SLPEDMGILLKRL 319 >UniRef50_Q38VN9 Pseudouridine synthase n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38VN9_LACSS Length = 306 Score = 304 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 83/308 (26%), Positives = 127/308 (41%), Gaps = 29/308 (9%) Query: 16 DEAGQRIDNFLRTQLKGVPKSMIYRIL-RKGEVRVNKKRIKPEYKLEAGDEVRIPPVRVA 74 D G + NFLR + +S + +I G++ VN + +L D V + Sbjct: 9 DSEGCILRNFLRRH--EISRSQLSKIKFSGGQILVNGQEAHTNIRLVQNDVVTVYLAPEV 66 Query: 75 EREEEAVSPHLQKVAALADVILYEDDHILVLNKPSGTAVHGGSGLSFGVIEGLRALR--- 131 E I YEDDH L+++KP+ A + Sbjct: 67 AVEH-------VIPVKGDLKIAYEDDHFLIVDKPAFVASLPAPNHPNNTMANFVKQYLID 119 Query: 132 --PEARFLELVHRLDRDTSGVLLVAKKRSALRSLHEQLREKGMQKDYLALVRGQWQSH-- 187 E+ + +V RLDRDTSG+++ K A L QL+ K +QK Y+A+ G + Sbjct: 120 EQAESLAVHVVTRLDRDTSGLMMFTKHGFAHSLLDRQLQSKELQKTYIAIASGDMREDLP 179 Query: 188 -VKSVQAPLLKNILQSGERIVRVSQEGKPSETRFKVEERYAFATLVRCSPVTGRTHQIRV 246 + P+ ++ R+V + GK S T + ATLV+ +TGRTHQIRV Sbjct: 180 QHAWIDRPIKRSEEFYMRRVV--GEGGKRSLTEYWQAAHGDGATLVKLKLLTGRTHQIRV 237 Query: 247 HTQYAGHPIAFDDRYGDREFDRQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDE 306 H GH + D+ YG E+ L R LH L F HP + +++P+ Sbjct: 238 HFASLGHSLIGDNLYG---------ESNDLLPRQALHCRQLTFYHPFEERTITVKSPVPA 288 Query: 307 GLKRCLQK 314 L + Sbjct: 289 DFSAVLAQ 296 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.191 0.694 Lambda K H 0.267 0.0587 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,645,435,439 Number of Sequences: 3077464 Number of extensions: 151746961 Number of successful extensions: 368900 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 3275 Number of HSP's successfully gapped in prelim test: 1609 Number of HSP's that attempted gapping in prelim test: 351384 Number of HSP's gapped (non-prelim): 5664 length of query: 319 length of database: 1,040,396,356 effective HSP length: 128 effective length of query: 191 effective length of database: 646,480,964 effective search space: 123477864124 effective search space used: 123477864124 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 94 (40.3 bits)