Phyre 2 alignment of P77759 with d2f4ma1

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Job Description | P77759
Confidence | 13.23% | Date | Thu Jan 5 12:32:39 GMT 2012
Rank | 2 | Aligned Residues | 34
% Identity | 24% | Template | d2f4ma1
SCOP info | Cysteine proteinases | Cysteine proteinases | Transglutaminase core
Resolution | 1.85

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 56 | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 |  | . | . | . | . | . | . | . | . | . | 80 | . | . |  | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |
Query Sequence |  | Y | Y | D | P | L | Q | G | R | Y | I | T | Q | D | P | I | . | G | L | E | G | G | W | S | L | Y | A | Y | P | . | L | N | P | V | N | G | I
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | V | Y | S | P | S | Q | Q | R | W | L | H | C | D | A | C | E | D | V | C | D | K | P | L | L | Y | E | I | G | W | G | K | K | L | S | Y | I
Template Known Secondary structure |  |  |  |  | T | T | T | T |  |  |  |  |  |  | T | T | T | T |  |  | S |  | G | G | G | T | T | T | T | S |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 338 | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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