BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (52 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P11895 Protein hok n=34 Tax=root RepID=HOK_ECOLX 105 3e-22 UniRef50_C9Y3Z0 Protein hok n=2 Tax=Cronobacter turicensis RepID... 83 2e-15 UniRef50_Q9F578 YaeB protein n=8 Tax=Enterobacteriaceae RepID=Q9... 76 3e-13 UniRef50_B5RJZ0 Hok/Gef family protein n=1 Tax=Klebsiella pneumo... 66 4e-10 UniRef50_P77494 Protein hokB n=10 Tax=Escherichia coli RepID=HOK... 57 3e-07 UniRef50_D2TJU7 Small toxic membrane protein HokA n=2 Tax=Entero... 52 8e-06 UniRef50_UPI0001C3405D hypothetical protein EcanA3_00680 n=1 Tax... 51 1e-05 UniRef50_A7MEL1 Putative uncharacterized protein n=3 Tax=Gammapr... 50 2e-05 UniRef50_C8TT42 Regulatory protein MokC for HokC n=40 Tax=root R... 50 2e-05 UniRef50_P0ACG4 Protein hokC n=80 Tax=Bacteria RepID=HOKC_ECOLI 47 2e-04 UniRef50_A7MPJ9 Putative uncharacterized protein n=2 Tax=Cronoba... 45 0.001 UniRef50_Q8D675 Putative uncharacterized protein n=1 Tax=Vibrio ... 43 0.004 UniRef50_Q1RBZ5 Putative uncharacterized protein hok n=1 Tax=Esc... 40 0.021 UniRef50_P16477 Protein pndA n=65 Tax=root RepID=PNDA2_ECOLX 39 0.036 UniRef50_C9Y1C5 Putative uncharacterized protein n=2 Tax=Enterob... 39 0.058 >UniRef50_P11895 Protein hok n=34 Tax=root RepID=HOK_ECOLX Length = 52 Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 51/52 (98%), Positives = 52/52 (100%) Query: 1 MKLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52 MKLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDG+REVAAFMAYESGK Sbjct: 1 MKLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGHREVAAFMAYESGK 52 >UniRef50_C9Y3Z0 Protein hok n=2 Tax=Cronobacter turicensis RepID=C9Y3Z0_CROTZ Length = 52 Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 37/52 (71%), Positives = 46/52 (88%) Query: 1 MKLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52 MKL RS+L WCVL++C+TLL+FT+LTR SLCE+R +DG RE AAF+AYESGK Sbjct: 1 MKLLRSTLFWCVLMICITLLMFTFLTRHSLCELRLKDGQREFAAFLAYESGK 52 >UniRef50_Q9F578 YaeB protein n=8 Tax=Enterobacteriaceae RepID=Q9F578_ECOLX Length = 53 Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 34/51 (66%), Positives = 41/51 (80%) Query: 1 MKLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESG 51 MK P+++L WC+LIVC TLLIFTYLTR LCE+R +DG REV A +AYES Sbjct: 1 MKQPKNALTWCLLIVCCTLLIFTYLTRNRLCEVRLKDGDREVTASLAYESN 51 >UniRef50_B5RJZ0 Hok/Gef family protein n=1 Tax=Klebsiella pneumoniae 342 RepID=B5RJZ0_KLEP3 Length = 55 Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 31/35 (88%), Positives = 33/35 (94%) Query: 1 MKLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRY 35 MKLP S+L+WCVLIVCLTLL FTYLTRKSLCEIRY Sbjct: 1 MKLPPSNLLWCVLIVCLTLLAFTYLTRKSLCEIRY 35 >UniRef50_P77494 Protein hokB n=10 Tax=Escherichia coli RepID=HOKB_ECOLI Length = 49 Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 26/48 (54%), Positives = 37/48 (77%) Query: 3 LPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYES 50 + + LV C+LI+C+T+L FT LTR++L E+R+RDG +EVAA MA S Sbjct: 1 MKHNPLVVCLLIICITILTFTLLTRQTLYELRFRDGDKEVAALMACTS 48 >UniRef50_D2TJU7 Small toxic membrane protein HokA n=2 Tax=Enterobacteriaceae RepID=D2TJU7_CITRO Length = 50 Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 35/47 (74%) Query: 3 LPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYE 49 +P+ ++ ++++CLT+L+FT++ R SLCE+ R G E+AAF+A E Sbjct: 1 MPQKCILCSLIVICLTILLFTWMVRDSLCELHIRQGNNELAAFLACE 47 >UniRef50_UPI0001C3405D hypothetical protein EcanA3_00680 n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001C3405D Length = 50 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 36/50 (72%) Query: 3 LPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52 +P+ +L+ + ++C TLLIFT++ R SLCE+ +R E+AA +AYE+ + Sbjct: 1 MPKRALLLGLFLICTTLLIFTWMVRDSLCELHFRQEKTELAAVLAYEAKR 50 >UniRef50_A7MEL1 Putative uncharacterized protein n=3 Tax=Gammaproteobacteria RepID=A7MEL1_ENTS8 Length = 52 Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 35/47 (74%) Query: 1 MKLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMA 47 M + ++ +WC++IVC+T+++FT L+R++LCE+R R E+ A +A Sbjct: 1 MAMKDNTFIWCIIIVCVTVIMFTTLSRETLCELRLRGAGMEIVASLA 47 >UniRef50_C8TT42 Regulatory protein MokC for HokC n=40 Tax=root RepID=C8TT42_ECO26 Length = 70 Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 36/52 (69%), Gaps = 1/52 (1%) Query: 1 MKLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52 MK ++ L+ ++++CLT+++ +TRK LCE+R R G EVA F+ YES K Sbjct: 20 MKQQKAMLIA-LIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFVDYESEK 70 >UniRef50_P0ACG4 Protein hokC n=80 Tax=Bacteria RepID=HOKC_ECOLI Length = 50 Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 30/47 (63%) Query: 4 PRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYES 50 +++ ++++C+T ++ +TRK LCE+ R G EVA F AYES Sbjct: 3 QHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYES 49 >UniRef50_A7MPJ9 Putative uncharacterized protein n=2 Tax=Cronobacter RepID=A7MPJ9_ENTS8 Length = 56 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 30/44 (68%) Query: 4 PRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMA 47 P L+ C+ +VC+T+LIF + + +LCE+ R G +EVAA +A Sbjct: 9 PLHYLLACLFMVCITILIFALMNQGTLCELTIRSGSQEVAAKLA 52 >UniRef50_Q8D675 Putative uncharacterized protein n=1 Tax=Vibrio vulnificus RepID=Q8D675_VIBVU Length = 65 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 32/47 (68%) Query: 3 LPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYE 49 +P+ + + +++VC+T +I T L SLC+IRY+D +++ +AYE Sbjct: 17 MPKKTALAALVVVCITAVILTALYTGSLCDIRYKDQQNDLSIKLAYE 63 >UniRef50_Q1RBZ5 Putative uncharacterized protein hok n=1 Tax=Escherichia coli UTI89 RepID=Q1RBZ5_ECOUT Length = 163 Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust. Identities = 21/33 (63%), Positives = 26/33 (78%), Gaps = 1/33 (3%) Query: 18 TLLIFTYLTRKSLCEIRYRDGYREVAAFMAYES 50 T+L FT LTR+SL E+R+RDG +EVAA MA S Sbjct: 131 TILTFT-LTRQSLYELRFRDGDKEVAALMACTS 162 >UniRef50_P16477 Protein pndA n=65 Tax=root RepID=PNDA2_ECOLX Length = 50 Score = 39.3 bits (90), Expect = 0.036, Method: Compositional matrix adjust. Identities = 15/47 (31%), Positives = 31/47 (65%) Query: 3 LPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYE 49 +P+ + + ++++C+T+L F ++ R SLC +R + G + A +AYE Sbjct: 1 MPQRTFLMMLIVICVTILCFVWMVRDSLCGLRLQQGNTVLVATLAYE 47 >UniRef50_C9Y1C5 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=C9Y1C5_CROTZ Length = 50 Score = 38.9 bits (89), Expect = 0.058, Method: Compositional matrix adjust. Identities = 16/41 (39%), Positives = 25/41 (60%) Query: 4 PRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAA 44 P L C ++ C+T+LIF + +LCE+ + G +EVAA Sbjct: 3 PLKYLFACFVVFCVTILIFALINHGTLCELTIKQGNKEVAA 43 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P11895 Protein hok n=34 Tax=root RepID=HOK_ECOLX 74 1e-12 UniRef50_Q9F578 YaeB protein n=8 Tax=Enterobacteriaceae RepID=Q9... 69 4e-11 UniRef50_C9Y3Z0 Protein hok n=2 Tax=Cronobacter turicensis RepID... 66 4e-10 UniRef50_D2TJU7 Small toxic membrane protein HokA n=2 Tax=Entero... 58 8e-08 UniRef50_UPI0001C3405D hypothetical protein EcanA3_00680 n=1 Tax... 58 1e-07 UniRef50_C8TT42 Regulatory protein MokC for HokC n=40 Tax=root R... 56 3e-07 UniRef50_P77494 Protein hokB n=10 Tax=Escherichia coli RepID=HOK... 56 4e-07 UniRef50_P0ACG4 Protein hokC n=80 Tax=Bacteria RepID=HOKC_ECOLI 55 7e-07 UniRef50_A7MEL1 Putative uncharacterized protein n=3 Tax=Gammapr... 54 1e-06 UniRef50_A7MPJ9 Putative uncharacterized protein n=2 Tax=Cronoba... 53 2e-06 UniRef50_B5RJZ0 Hok/Gef family protein n=1 Tax=Klebsiella pneumo... 53 4e-06 Sequences not found previously or not previously below threshold: UniRef50_C9Y1C5 Putative uncharacterized protein n=2 Tax=Enterob... 46 3e-04 UniRef50_P16477 Protein pndA n=65 Tax=root RepID=PNDA2_ECOLX 45 8e-04 UniRef50_A4SUJ6 SrnB protein n=1 Tax=Aeromonas salmonicida subsp... 44 0.002 UniRef50_Q8D675 Putative uncharacterized protein n=1 Tax=Vibrio ... 43 0.003 UniRef50_Q8XBW9 Protein hokE n=102 Tax=Enterobacteriaceae RepID=... 40 0.026 UniRef50_Q1RBZ5 Putative uncharacterized protein hok n=1 Tax=Esc... 38 0.071 >UniRef50_P11895 Protein hok n=34 Tax=root RepID=HOK_ECOLX Length = 52 Score = 74.2 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 51/52 (98%), Positives = 52/52 (100%) Query: 1 MKLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52 MKLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDG+REVAAFMAYESGK Sbjct: 1 MKLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGHREVAAFMAYESGK 52 >UniRef50_Q9F578 YaeB protein n=8 Tax=Enterobacteriaceae RepID=Q9F578_ECOLX Length = 53 Score = 69.2 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 34/51 (66%), Positives = 41/51 (80%) Query: 1 MKLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESG 51 MK P+++L WC+LIVC TLLIFTYLTR LCE+R +DG REV A +AYES Sbjct: 1 MKQPKNALTWCLLIVCCTLLIFTYLTRNRLCEVRLKDGDREVTASLAYESN 51 >UniRef50_C9Y3Z0 Protein hok n=2 Tax=Cronobacter turicensis RepID=C9Y3Z0_CROTZ Length = 52 Score = 66.1 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 37/52 (71%), Positives = 46/52 (88%) Query: 1 MKLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52 MKL RS+L WCVL++C+TLL+FT+LTR SLCE+R +DG RE AAF+AYESGK Sbjct: 1 MKLLRSTLFWCVLMICITLLMFTFLTRHSLCELRLKDGQREFAAFLAYESGK 52 >UniRef50_D2TJU7 Small toxic membrane protein HokA n=2 Tax=Enterobacteriaceae RepID=D2TJU7_CITRO Length = 50 Score = 58.4 bits (140), Expect = 8e-08, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 36/50 (72%) Query: 3 LPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52 +P+ ++ ++++CLT+L+FT++ R SLCE+ R G E+AAF+A E + Sbjct: 1 MPQKCILCSLIVICLTILLFTWMVRDSLCELHIRQGNNELAAFLACEVKQ 50 >UniRef50_UPI0001C3405D hypothetical protein EcanA3_00680 n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001C3405D Length = 50 Score = 57.6 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 36/50 (72%) Query: 3 LPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52 +P+ +L+ + ++C TLLIFT++ R SLCE+ +R E+AA +AYE+ + Sbjct: 1 MPKRALLLGLFLICTTLLIFTWMVRDSLCELHFRQEKTELAAVLAYEAKR 50 >UniRef50_C8TT42 Regulatory protein MokC for HokC n=40 Tax=root RepID=C8TT42_ECO26 Length = 70 Score = 56.5 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 34/49 (69%) Query: 4 PRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52 + +++ ++++CLT+++ +TRK LCE+R R G EVA F+ YES K Sbjct: 22 QQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFVDYESEK 70 >UniRef50_P77494 Protein hokB n=10 Tax=Escherichia coli RepID=HOKB_ECOLI Length = 49 Score = 55.7 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 26/48 (54%), Positives = 37/48 (77%) Query: 3 LPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYES 50 + + LV C+LI+C+T+L FT LTR++L E+R+RDG +EVAA MA S Sbjct: 1 MKHNPLVVCLLIICITILTFTLLTRQTLYELRFRDGDKEVAALMACTS 48 >UniRef50_P0ACG4 Protein hokC n=80 Tax=Bacteria RepID=HOKC_ECOLI Length = 50 Score = 54.9 bits (131), Expect = 7e-07, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 4 PRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESG 51 +++ ++++C+T ++ +TRK LCE+ R G EVA F AYES Sbjct: 3 QHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 50 >UniRef50_A7MEL1 Putative uncharacterized protein n=3 Tax=Gammaproteobacteria RepID=A7MEL1_ENTS8 Length = 52 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 36/49 (73%) Query: 1 MKLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYE 49 M + ++ +WC++IVC+T+++FT L+R++LCE+R R E+ A +A + Sbjct: 1 MAMKDNTFIWCIIIVCVTVIMFTTLSRETLCELRLRGAGMEIVASLACK 49 >UniRef50_A7MPJ9 Putative uncharacterized protein n=2 Tax=Cronobacter RepID=A7MPJ9_ENTS8 Length = 56 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 4 PRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESG 51 P L+ C+ +VC+T+LIF + + +LCE+ R G +EVAA +A Sbjct: 9 PLHYLLACLFMVCITILIFALMNQGTLCELTIRSGSQEVAAKLACTGK 56 >UniRef50_B5RJZ0 Hok/Gef family protein n=1 Tax=Klebsiella pneumoniae 342 RepID=B5RJZ0_KLEP3 Length = 55 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 31/35 (88%), Positives = 33/35 (94%) Query: 1 MKLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRY 35 MKLP S+L+WCVLIVCLTLL FTYLTRKSLCEIRY Sbjct: 1 MKLPPSNLLWCVLIVCLTLLAFTYLTRKSLCEIRY 35 >UniRef50_C9Y1C5 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=C9Y1C5_CROTZ Length = 50 Score = 46.4 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 27/45 (60%) Query: 4 PRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAY 48 P L C ++ C+T+LIF + +LCE+ + G +EVAA ++ Sbjct: 3 PLKYLFACFVVFCVTILIFALINHGTLCELTIKQGNKEVAARLSC 47 >UniRef50_P16477 Protein pndA n=65 Tax=root RepID=PNDA2_ECOLX Length = 50 Score = 44.9 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 32/50 (64%) Query: 3 LPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52 +P+ + + ++++C+T+L F ++ R SLC +R + G + A +AYE + Sbjct: 1 MPQRTFLMMLIVICVTILCFVWMVRDSLCGLRLQQGNTVLVATLAYEVKR 50 >UniRef50_A4SUJ6 SrnB protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SUJ6_AERS4 Length = 120 Score = 43.7 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 26/47 (55%) Query: 6 SSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52 + V +LIVC+T L L R SLCE+ G E+ +AYE+ + Sbjct: 74 KTAVVSLLIVCITALGVISLVRDSLCELEVHQGETEIRLNLAYEAKR 120 >UniRef50_Q8D675 Putative uncharacterized protein n=1 Tax=Vibrio vulnificus RepID=Q8D675_VIBVU Length = 65 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 32/47 (68%) Query: 3 LPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYE 49 +P+ + + +++VC+T +I T L SLC+IRY+D +++ +AYE Sbjct: 17 MPKKTALAALVVVCITAVILTALYTGSLCDIRYKDQQNDLSIKLAYE 63 >UniRef50_Q8XBW9 Protein hokE n=102 Tax=Enterobacteriaceae RepID=HOKE_ECO57 Length = 50 Score = 39.9 bits (92), Expect = 0.026, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 27/50 (54%) Query: 3 LPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52 + + V+++CLT+L FT L SLCE ++ E A +AYE K Sbjct: 1 MLTKYALVAVIVLCLTVLGFTLLVGDSLCEFTVKERNIEFKAVLAYEPKK 50 >UniRef50_Q1RBZ5 Putative uncharacterized protein hok n=1 Tax=Escherichia coli UTI89 RepID=Q1RBZ5_ECOUT Length = 163 Score = 38.4 bits (88), Expect = 0.071, Method: Composition-based stats. Identities = 21/33 (63%), Positives = 26/33 (78%), Gaps = 1/33 (3%) Query: 18 TLLIFTYLTRKSLCEIRYRDGYREVAAFMAYES 50 T+L FT LTR+SL E+R+RDG +EVAA MA S Sbjct: 131 TILTFT-LTRQSLYELRFRDGDKEVAALMACTS 162 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P11895 Protein hok n=34 Tax=root RepID=HOK_ECOLX 68 1e-10 UniRef50_Q9F578 YaeB protein n=8 Tax=Enterobacteriaceae RepID=Q9... 63 3e-09 UniRef50_C9Y3Z0 Protein hok n=2 Tax=Cronobacter turicensis RepID... 60 2e-08 UniRef50_D2TJU7 Small toxic membrane protein HokA n=2 Tax=Entero... 58 8e-08 UniRef50_UPI0001C3405D hypothetical protein EcanA3_00680 n=1 Tax... 56 3e-07 UniRef50_A4SUJ6 SrnB protein n=1 Tax=Aeromonas salmonicida subsp... 53 2e-06 UniRef50_C8TT42 Regulatory protein MokC for HokC n=40 Tax=root R... 52 5e-06 UniRef50_A7MPJ9 Putative uncharacterized protein n=2 Tax=Cronoba... 52 5e-06 UniRef50_P16477 Protein pndA n=65 Tax=root RepID=PNDA2_ECOLX 52 5e-06 UniRef50_P77494 Protein hokB n=10 Tax=Escherichia coli RepID=HOK... 52 6e-06 UniRef50_A7MEL1 Putative uncharacterized protein n=3 Tax=Gammapr... 51 9e-06 UniRef50_C9Y1C5 Putative uncharacterized protein n=2 Tax=Enterob... 51 1e-05 UniRef50_P0ACG4 Protein hokC n=80 Tax=Bacteria RepID=HOKC_ECOLI 50 2e-05 UniRef50_B5RJZ0 Hok/Gef family protein n=1 Tax=Klebsiella pneumo... 49 5e-05 Sequences not found previously or not previously below threshold: UniRef50_Q8D675 Putative uncharacterized protein n=1 Tax=Vibrio ... 43 0.004 UniRef50_Q8XBW9 Protein hokE n=102 Tax=Enterobacteriaceae RepID=... 41 0.009 UniRef50_P13970 Protein srnB n=20 Tax=Enterobacteriaceae RepID=S... 41 0.010 UniRef50_A7ZGU5 Protein SrnB n=3 Tax=Bacteria RepID=A7ZGU5_ECO24 41 0.015 CONVERGED! >UniRef50_P11895 Protein hok n=34 Tax=root RepID=HOK_ECOLX Length = 52 Score = 67.6 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 51/52 (98%), Positives = 52/52 (100%) Query: 1 MKLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52 MKLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDG+REVAAFMAYESGK Sbjct: 1 MKLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGHREVAAFMAYESGK 52 >UniRef50_Q9F578 YaeB protein n=8 Tax=Enterobacteriaceae RepID=Q9F578_ECOLX Length = 53 Score = 63.0 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 34/51 (66%), Positives = 41/51 (80%) Query: 1 MKLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESG 51 MK P+++L WC+LIVC TLLIFTYLTR LCE+R +DG REV A +AYES Sbjct: 1 MKQPKNALTWCLLIVCCTLLIFTYLTRNRLCEVRLKDGDREVTASLAYESN 51 >UniRef50_C9Y3Z0 Protein hok n=2 Tax=Cronobacter turicensis RepID=C9Y3Z0_CROTZ Length = 52 Score = 60.3 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 37/52 (71%), Positives = 46/52 (88%) Query: 1 MKLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52 MKL RS+L WCVL++C+TLL+FT+LTR SLCE+R +DG RE AAF+AYESGK Sbjct: 1 MKLLRSTLFWCVLMICITLLMFTFLTRHSLCELRLKDGQREFAAFLAYESGK 52 >UniRef50_D2TJU7 Small toxic membrane protein HokA n=2 Tax=Enterobacteriaceae RepID=D2TJU7_CITRO Length = 50 Score = 58.0 bits (139), Expect = 8e-08, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 36/50 (72%) Query: 3 LPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52 +P+ ++ ++++CLT+L+FT++ R SLCE+ R G E+AAF+A E + Sbjct: 1 MPQKCILCSLIVICLTILLFTWMVRDSLCELHIRQGNNELAAFLACEVKQ 50 >UniRef50_UPI0001C3405D hypothetical protein EcanA3_00680 n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001C3405D Length = 50 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 36/50 (72%) Query: 3 LPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52 +P+ +L+ + ++C TLLIFT++ R SLCE+ +R E+AA +AYE+ + Sbjct: 1 MPKRALLLGLFLICTTLLIFTWMVRDSLCELHFRQEKTELAAVLAYEAKR 50 >UniRef50_A4SUJ6 SrnB protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SUJ6_AERS4 Length = 120 Score = 53.4 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 18/47 (38%), Positives = 26/47 (55%) Query: 6 SSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52 + V +LIVC+T L L R SLCE+ G E+ +AYE+ + Sbjct: 74 KTAVVSLLIVCITALGVISLVRDSLCELEVHQGETEIRLNLAYEAKR 120 >UniRef50_C8TT42 Regulatory protein MokC for HokC n=40 Tax=root RepID=C8TT42_ECO26 Length = 70 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 34/49 (69%) Query: 4 PRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52 + +++ ++++CLT+++ +TRK LCE+R R G EVA F+ YES K Sbjct: 22 QQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVFVDYESEK 70 >UniRef50_A7MPJ9 Putative uncharacterized protein n=2 Tax=Cronobacter RepID=A7MPJ9_ENTS8 Length = 56 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 4 PRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESG 51 P L+ C+ +VC+T+LIF + + +LCE+ R G +EVAA +A Sbjct: 9 PLHYLLACLFMVCITILIFALMNQGTLCELTIRSGSQEVAAKLACTGK 56 >UniRef50_P16477 Protein pndA n=65 Tax=root RepID=PNDA2_ECOLX Length = 50 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 32/50 (64%) Query: 3 LPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52 +P+ + + ++++C+T+L F ++ R SLC +R + G + A +AYE + Sbjct: 1 MPQRTFLMMLIVICVTILCFVWMVRDSLCGLRLQQGNTVLVATLAYEVKR 50 >UniRef50_P77494 Protein hokB n=10 Tax=Escherichia coli RepID=HOKB_ECOLI Length = 49 Score = 52.2 bits (124), Expect = 6e-06, Method: Composition-based stats. Identities = 26/49 (53%), Positives = 37/49 (75%) Query: 3 LPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESG 51 + + LV C+LI+C+T+L FT LTR++L E+R+RDG +EVAA MA S Sbjct: 1 MKHNPLVVCLLIICITILTFTLLTRQTLYELRFRDGDKEVAALMACTSR 49 >UniRef50_A7MEL1 Putative uncharacterized protein n=3 Tax=Gammaproteobacteria RepID=A7MEL1_ENTS8 Length = 52 Score = 51.4 bits (122), Expect = 9e-06, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 36/49 (73%) Query: 1 MKLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYE 49 M + ++ +WC++IVC+T+++FT L+R++LCE+R R E+ A +A + Sbjct: 1 MAMKDNTFIWCIIIVCVTVIMFTTLSRETLCELRLRGAGMEIVASLACK 49 >UniRef50_C9Y1C5 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=C9Y1C5_CROTZ Length = 50 Score = 51.1 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 27/45 (60%) Query: 4 PRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAY 48 P L C ++ C+T+LIF + +LCE+ + G +EVAA ++ Sbjct: 3 PLKYLFACFVVFCVTILIFALINHGTLCELTIKQGNKEVAARLSC 47 >UniRef50_P0ACG4 Protein hokC n=80 Tax=Bacteria RepID=HOKC_ECOLI Length = 50 Score = 50.3 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 30/48 (62%) Query: 4 PRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESG 51 +++ ++++C+T ++ +TRK LCE+ R G EVA F AYES Sbjct: 3 QHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVFTAYESE 50 >UniRef50_B5RJZ0 Hok/Gef family protein n=1 Tax=Klebsiella pneumoniae 342 RepID=B5RJZ0_KLEP3 Length = 55 Score = 48.7 bits (115), Expect = 5e-05, Method: Composition-based stats. Identities = 31/35 (88%), Positives = 33/35 (94%) Query: 1 MKLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRY 35 MKLP S+L+WCVLIVCLTLL FTYLTRKSLCEIRY Sbjct: 1 MKLPPSNLLWCVLIVCLTLLAFTYLTRKSLCEIRY 35 >UniRef50_Q8D675 Putative uncharacterized protein n=1 Tax=Vibrio vulnificus RepID=Q8D675_VIBVU Length = 65 Score = 42.6 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 32/49 (65%) Query: 3 LPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESG 51 +P+ + + +++VC+T +I T L SLC+IRY+D +++ +AYE Sbjct: 17 MPKKTALAALVVVCITAVILTALYTGSLCDIRYKDQQNDLSIKLAYEVR 65 >UniRef50_Q8XBW9 Protein hokE n=102 Tax=Enterobacteriaceae RepID=HOKE_ECO57 Length = 50 Score = 41.4 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 27/50 (54%) Query: 3 LPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52 + + V+++CLT+L FT L SLCE ++ E A +AYE K Sbjct: 1 MLTKYALVAVIVLCLTVLGFTLLVGDSLCEFTVKERNIEFKAVLAYEPKK 50 >UniRef50_P13970 Protein srnB n=20 Tax=Enterobacteriaceae RepID=SRNB_ECOLI Length = 68 Score = 41.4 bits (96), Expect = 0.010, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 26/51 (50%) Query: 2 KLPRSSLVWCVLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52 K + +L VC T+L F+ + R+ LCE+ G V +AYE+ K Sbjct: 18 KFMTKYALIGLLAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARK 68 >UniRef50_A7ZGU5 Protein SrnB n=3 Tax=Bacteria RepID=A7ZGU5_ECO24 Length = 65 Score = 40.7 bits (94), Expect = 0.015, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 23/41 (56%) Query: 12 VLIVCLTLLIFTYLTRKSLCEIRYRDGYREVAAFMAYESGK 52 + VC T+L F+ + R+ LCE+ G V +AYE+ + Sbjct: 1 MFAVCATVLCFSLIFRERLCELNIHRGNTVVQVTLAYEARQ 41 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.328 0.150 0.428 Lambda K H 0.267 0.0458 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 306,180,178 Number of Sequences: 3077464 Number of extensions: 8321708 Number of successful extensions: 36234 Number of sequences better than 1.0e-01: 23 Number of HSP's better than 0.1 without gapping: 58 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 36175 Number of HSP's gapped (non-prelim): 61 length of query: 52 length of database: 1,040,396,356 effective HSP length: 25 effective length of query: 27 effective length of database: 963,459,756 effective search space: 26013413412 effective search space used: 26013413412 T: 11 A: 40 X1: 16 ( 7.6 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 87 (38.0 bits)