BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (270 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q15VG2 tRNA pseudouridine synthase A n=12 Tax=Gammaprot... 361 1e-98 UniRef50_B8D8Z8 tRNA pseudouridine synthase A n=6 Tax=Enterobact... 325 1e-87 UniRef50_Q31HH6 tRNA pseudouridine synthase A n=4 Tax=Gammaprote... 304 3e-81 UniRef50_A1U0X5 Pseudouridylate synthase n=7 Tax=Bacteria RepID=... 296 4e-79 UniRef50_Q1QY44 Pseudouridylate synthase n=1 Tax=Chromohalobacte... 294 2e-78 UniRef50_B3PFN7 Pseudouridylate synthase n=2 Tax=Gammaproteobact... 289 8e-77 UniRef50_Q8K9U4 tRNA pseudouridine synthase A n=2 Tax=Buchnera a... 281 1e-74 UniRef50_A5WGT0 Pseudouridylate synthase n=6 Tax=Moraxellaceae R... 280 3e-74 UniRef50_Q6FEV2 tRNA pseudouridine synthase A n=383 Tax=Proteoba... 275 8e-73 UniRef50_Q21IY8 Pseudouridylate synthase n=2 Tax=Gammaproteobact... 262 9e-69 UniRef50_A7C1F2 Pseudouridylate synthase n=1 Tax=Beggiatoa sp. P... 254 2e-66 UniRef50_A7NCA0 tRNA pseudouridine synthase A n=19 Tax=Francisel... 254 2e-66 UniRef50_C8NBU9 Pseudouridylate synthase n=1 Tax=Cardiobacterium... 251 1e-65 UniRef50_Q8D2P5 tRNA pseudouridine synthase A n=1 Tax=Wiggleswor... 244 2e-63 UniRef50_A4BHD0 Pseudouridylate synthase n=1 Tax=Reinekea blande... 243 3e-63 UniRef50_Q0AGX7 tRNA pseudouridine synthase A n=26 Tax=Proteobac... 243 6e-63 UniRef50_C5T803 Pseudouridylate synthase n=2 Tax=Comamonadaceae ... 239 1e-61 UniRef50_A1AXN3 Pseudouridylate synthase n=3 Tax=Bacteria RepID=... 238 2e-61 UniRef50_B1XV49 tRNA pseudouridine synthase A n=97 Tax=Betaprote... 238 2e-61 UniRef50_B9TJ99 Pseudouridylate synthase n=4 Tax=cellular organi... 234 2e-60 UniRef50_C0EKI9 Pseudouridylate synthase n=6 Tax=Neisseriaceae R... 214 3e-54 UniRef50_UPI0000F2F657 tRNA pseudouridine synthase A n=1 Tax=Aci... 214 3e-54 UniRef50_A0L9F6 Pseudouridylate synthase n=1 Tax=Magnetococcus s... 214 3e-54 UniRef50_A9BNH5 tRNA pseudouridine synthase A n=9 Tax=cellular o... 210 5e-53 UniRef50_UPI0000E87E98 tRNA pseudouridine synthase A n=1 Tax=Met... 206 6e-52 UniRef50_Q5FPX3 tRNA pseudouridine synthase A n=1 Tax=Gluconobac... 202 7e-51 UniRef50_UPI00016C512A tRNA pseudouridine synthase A n=1 Tax=Gem... 192 9e-48 UniRef50_Q0F2X2 Pseudouridylate synthase n=1 Tax=Mariprofundus f... 190 4e-47 UniRef50_Q3A3B5 tRNA pseudouridine synthase A n=6 Tax=Desulfurom... 189 7e-47 UniRef50_Q1K346 Pseudouridylate synthase n=1 Tax=Desulfuromonas ... 189 1e-46 UniRef50_B6BU98 Pseudouridylate synthase n=1 Tax=beta proteobact... 186 7e-46 UniRef50_C0X1G0 Pseudouridylate synthase n=36 Tax=Enterococcus R... 186 8e-46 UniRef50_Q0AUL4 tRNA pseudouridine synthase A n=1 Tax=Syntrophom... 186 8e-46 UniRef50_A6TWE8 Pseudouridylate synthase n=8 Tax=Clostridiales R... 184 2e-45 UniRef50_B8I814 tRNA pseudouridine synthase A n=19 Tax=Clostridi... 184 2e-45 UniRef50_B0KCN3 tRNA pseudouridine synthase A n=9 Tax=Clostridia... 183 6e-45 UniRef50_UPI0001698EEB tRNA pseudouridine synthase A n=1 Tax=End... 182 8e-45 UniRef50_D0LWH9 Pseudouridylate synthase n=2 Tax=Deltaproteobact... 182 1e-44 UniRef50_D2RNY1 tRNA pseudouridine synthase A n=2 Tax=Acidaminoc... 182 1e-44 UniRef50_Q2LUS6 Pseudouridylate synthase n=5 Tax=Bacteria RepID=... 182 2e-44 UniRef50_Q5HBA4 tRNA pseudouridine synthase A n=13 Tax=Rickettsi... 180 4e-44 UniRef50_A4XKB7 tRNA pseudouridine synthase A n=11 Tax=Clostridi... 179 7e-44 UniRef50_A3ZQX0 Pseudouridylate synthase n=1 Tax=Blastopirellula... 179 7e-44 UniRef50_B9KIN8 tRNA pseudouridine synthase A n=5 Tax=Anaplasmat... 179 9e-44 UniRef50_B0TC90 Pseudouridylate synthase n=3 Tax=Clostridiales R... 174 2e-42 UniRef50_A0LIV1 Pseudouridylate synthase n=1 Tax=Syntrophobacter... 174 2e-42 UniRef50_A8GUM4 tRNA pseudouridine synthase A n=19 Tax=Alphaprot... 174 3e-42 UniRef50_Q8XLQ0 tRNA pseudouridine synthase A 1 n=12 Tax=Clostri... 174 3e-42 UniRef50_Q2RNZ9 tRNA pseudouridine synthase A n=113 Tax=Alphapro... 174 4e-42 UniRef50_A8R9F5 Pseudouridylate synthase n=2 Tax=unclassified Er... 173 5e-42 UniRef50_D2R418 tRNA pseudouridine synthase A n=1 Tax=Pirellula ... 173 7e-42 UniRef50_C4Z854 Pseudouridylate synthase n=3 Tax=Clostridiales R... 171 2e-41 UniRef50_B7K222 tRNA pseudouridine synthase A n=12 Tax=Cyanobact... 171 2e-41 UniRef50_Q1Q1P7 Pseudouridylate synthase n=1 Tax=Candidatus Kuen... 171 2e-41 UniRef50_B5EFM8 tRNA pseudouridine synthase A n=4 Tax=Bacteria R... 171 3e-41 UniRef50_A8ZTL2 Pseudouridylate synthase n=1 Tax=Desulfococcus o... 171 3e-41 UniRef50_B2IEW0 tRNA pseudouridine synthase A n=2 Tax=Alphaprote... 169 6e-41 UniRef50_B9M6W5 tRNA pseudouridine synthase A n=8 Tax=Deltaprote... 169 1e-40 UniRef50_D0WG96 Pseudouridylate synthase n=1 Tax=Slackia exigua ... 167 3e-40 UniRef50_B9JQX0 tRNA pseudouridine synthase A n=19 Tax=Alphaprot... 167 3e-40 UniRef50_Q7MBB9 tRNA pseudouridine synthase A n=1 Tax=Gloeobacte... 166 6e-40 UniRef50_D1VSK1 Pseudouridylate synthase n=1 Tax=Peptoniphilus l... 166 8e-40 UniRef50_C4V5N7 Pseudouridylate synthase n=1 Tax=Selenomonas flu... 165 1e-39 UniRef50_B0N4B2 Pseudouridylate synthase n=4 Tax=Bacteria RepID=... 165 2e-39 UniRef50_A7VFR5 Pseudouridylate synthase n=7 Tax=Clostridiales R... 165 2e-39 UniRef50_A7VWN0 Pseudouridylate synthase n=2 Tax=Clostridium Rep... 164 4e-39 UniRef50_C1SLX8 Pseudouridylate synthase n=1 Tax=Denitrovibrio a... 164 4e-39 UniRef50_A5CET3 tRNA pseudouridine synthase A n=2 Tax=Orientia t... 163 4e-39 UniRef50_C4Z2W2 Pseudouridylate synthase n=10 Tax=Firmicutes Rep... 162 8e-39 UniRef50_A9WH95 tRNA pseudouridine synthase A n=5 Tax=Chloroflex... 162 9e-39 UniRef50_Q5WLN0 tRNA pseudouridine synthase A n=15 Tax=Bacillale... 162 1e-38 UniRef50_A9HKQ8 Pseudouridylate synthase n=4 Tax=Alphaproteobact... 162 1e-38 UniRef50_Q11XU3 Pseudouridylate synthase n=1 Tax=Cytophaga hutch... 159 7e-38 UniRef50_A5I338 Pseudouridylate synthase n=17 Tax=Firmicutes Rep... 159 1e-37 UniRef50_C6D4K9 Pseudouridylate synthase n=1 Tax=Paenibacillus s... 159 1e-37 UniRef50_Q7TU07 tRNA pseudouridine synthase A n=1 Tax=Rhodopirel... 159 1e-37 UniRef50_Q6MQH6 tRNA pseudouridine synthase A n=1 Tax=Bdellovibr... 159 1e-37 UniRef50_C0GG81 Pseudouridylate synthase n=1 Tax=Dethiobacter al... 158 2e-37 UniRef50_UPI0001C35668 tRNA pseudouridine synthase A n=1 Tax=Clo... 158 2e-37 UniRef50_Q031N1 tRNA pseudouridine synthase A n=66 Tax=Streptoco... 158 2e-37 UniRef50_C4F9Q5 Pseudouridylate synthase n=3 Tax=Coriobacteriace... 157 3e-37 UniRef50_B0S2E1 tRNA pseudouridine synthase A n=3 Tax=Bacteria R... 157 3e-37 UniRef50_C0QZT8 tRNA pseudouridine synthase A n=2 Tax=Brachyspir... 156 6e-37 UniRef50_B5ZN21 tRNA pseudouridine synthase A n=21 Tax=Alphaprot... 156 6e-37 UniRef50_Q3AW68 tRNA pseudouridine synthase A n=39 Tax=cellular ... 156 6e-37 UniRef50_C5NXQ0 Pseudouridylate synthase n=1 Tax=Gemella haemoly... 156 7e-37 UniRef50_B3E0A0 tRNA pseudouridine synthase A n=1 Tax=Methylacid... 156 7e-37 UniRef50_UPI0001BCC844 tRNA pseudouridine synthase A n=1 Tax=Sel... 155 9e-37 UniRef50_B0MNN1 Pseudouridylate synthase n=1 Tax=Eubacterium sir... 155 1e-36 UniRef50_C6PXV6 Pseudouridylate synthase n=2 Tax=Clostridium Rep... 155 1e-36 UniRef50_UPI0001973C8C tRNA pseudouridine synthase A n=1 Tax=Clo... 155 1e-36 UniRef50_UPI00016A3E9E tRNA pseudouridine synthase A n=1 Tax=Bur... 154 2e-36 UniRef50_A0LRQ0 Pseudouridylate synthase n=2 Tax=Actinomycetales... 154 2e-36 UniRef50_Q813Z9 tRNA pseudouridine synthase A 2 n=77 Tax=Firmicu... 153 5e-36 UniRef50_D0RR37 Pseudouridylate synthase n=1 Tax=alpha proteobac... 153 5e-36 UniRef50_B1I1B5 tRNA pseudouridine synthase A n=5 Tax=Clostridia... 153 7e-36 UniRef50_UPI0001C37706 tRNA pseudouridine synthase A n=1 Tax=Rum... 152 1e-35 UniRef50_A4EA88 Pseudouridylate synthase n=1 Tax=Collinsella aer... 152 1e-35 UniRef50_B9DM46 tRNA pseudouridine synthase A n=6 Tax=Staphyloco... 152 1e-35 UniRef50_B5CQB6 Pseudouridylate synthase n=9 Tax=Bacteria RepID=... 152 2e-35 UniRef50_Q45557 tRNA pseudouridine synthase A n=5 Tax=Firmicutes... 151 2e-35 UniRef50_Q6ANM1 tRNA pseudouridine synthase A 1 n=1 Tax=Desulfot... 151 2e-35 UniRef50_C8W7W7 Pseudouridylate synthase n=4 Tax=Coriobacteriace... 151 3e-35 UniRef50_A5N4T0 tRNA pseudouridine synthase A n=25 Tax=Clostridi... 150 4e-35 UniRef50_Q04BY4 tRNA pseudouridine synthase A n=79 Tax=Firmicute... 150 4e-35 UniRef50_C2DZZ6 Pseudouridylate synthase n=9 Tax=Lactobacillus R... 150 4e-35 UniRef50_Q7TU31 tRNA pseudouridine synthase A n=7 Tax=Prochloroc... 150 5e-35 UniRef50_C9KPE0 Pseudouridylate synthase n=2 Tax=Veillonellaceae... 150 6e-35 UniRef50_Q6G7A2 tRNA pseudouridine synthase A n=59 Tax=Staphyloc... 149 7e-35 UniRef50_C8WTU3 Pseudouridylate synthase n=2 Tax=Alicyclobacillu... 149 7e-35 UniRef50_Q253C0 tRNA pseudouridine synthase A n=12 Tax=Chlamydia... 149 8e-35 UniRef50_Q1GE00 tRNA pseudouridine synthase A n=2 Tax=Ruegeria R... 149 1e-34 UniRef50_B3QUL0 Pseudouridylate synthase n=1 Tax=Chloroherpeton ... 148 2e-34 UniRef50_Q2JUJ7 Pseudouridylate synthase n=2 Tax=Synechococcus R... 148 2e-34 UniRef50_A6NVS7 Pseudouridylate synthase n=1 Tax=Bacteroides cap... 148 2e-34 UniRef50_C6J6C3 Pseudouridylate synthase n=2 Tax=Bacillales RepI... 148 2e-34 UniRef50_Q3A9U9 Pseudouridylate synthase n=1 Tax=Carboxydothermu... 147 3e-34 UniRef50_Q4FNF9 tRNA pseudouridine synthase A n=5 Tax=Bacteria R... 147 4e-34 UniRef50_B0SC03 tRNA pseudouridine synthase A n=2 Tax=Leptospira... 147 4e-34 UniRef50_C3JAB4 Pseudouridylate synthase (Fragment) n=2 Tax=Bact... 147 4e-34 UniRef50_C2KS13 Pseudouridylate synthase n=2 Tax=Mobiluncus muli... 147 5e-34 UniRef50_B9KZV8 Pseudouridylate synthase n=1 Tax=Thermomicrobium... 147 5e-34 UniRef50_C2BS51 Pseudouridylate synthase n=1 Tax=Mobiluncus curt... 146 6e-34 UniRef50_C0GLA2 Pseudouridylate synthase n=1 Tax=Desulfonatronos... 146 7e-34 UniRef50_A8SNL4 Pseudouridylate synthase n=1 Tax=Parvimonas micr... 146 8e-34 UniRef50_C0VZ39 Pseudouridylate synthase n=1 Tax=Actinomyces col... 146 9e-34 UniRef50_Q63H59 tRNA pseudouridine synthase A 1 n=102 Tax=Bacill... 145 1e-33 UniRef50_C4GC36 Pseudouridylate synthase n=1 Tax=Shuttleworthia ... 145 1e-33 UniRef50_C2KUD3 Pseudouridylate synthase n=1 Tax=Oribacterium si... 145 1e-33 UniRef50_D1BP31 Pseudouridylate synthase n=3 Tax=Veillonella Rep... 145 2e-33 UniRef50_D2QH82 tRNA pseudouridine synthase A n=1 Tax=Spirosoma ... 145 2e-33 UniRef50_A9KLD6 Pseudouridylate synthase n=2 Tax=Clostridium Rep... 145 2e-33 UniRef50_C4XPZ9 tRNA pseudouridine synthase A n=4 Tax=Desulfovib... 144 2e-33 UniRef50_A7HKV8 tRNA pseudouridine synthase A n=11 Tax=Thermotog... 144 3e-33 UniRef50_C5CGS8 tRNA pseudouridine synthase A n=1 Tax=Kosmotoga ... 144 3e-33 UniRef50_C9LN87 Pseudouridylate synthase n=1 Tax=Dialister invis... 144 3e-33 UniRef50_Q89ZY4 tRNA pseudouridine synthase A n=12 Tax=Bacteroid... 144 4e-33 UniRef50_B2A4Q5 tRNA pseudouridine synthase A n=1 Tax=Natranaero... 143 5e-33 UniRef50_Q6MEE7 tRNA pseudouridine synthase A 1 n=2 Tax=Parachla... 143 8e-33 UniRef50_C2MC62 Pseudouridylate synthase n=1 Tax=Porphyromonas u... 142 9e-33 UniRef50_B9XDA1 Pseudouridylate synthase n=1 Tax=bacterium Ellin... 142 1e-32 UniRef50_Q28LN3 tRNA pseudouridine synthase A n=16 Tax=Rhodobact... 142 1e-32 UniRef50_D1B5U1 Pseudouridylate synthase n=1 Tax=Thermanaerovibr... 142 1e-32 UniRef50_B0VGH4 Pseudouridylate synthase n=1 Tax=Candidatus Cloa... 142 1e-32 UniRef50_Q03PY8 tRNA pseudouridine synthase A n=21 Tax=Lactobaci... 142 2e-32 UniRef50_C5RHY1 Pseudouridylate synthase n=1 Tax=Clostridium cel... 141 2e-32 UniRef50_D1PV12 Pseudouridylate synthase n=1 Tax=Prevotella berg... 141 2e-32 UniRef50_Q250I7 Pseudouridylate synthase n=2 Tax=Desulfitobacter... 141 2e-32 UniRef50_Q9RS37 tRNA pseudouridine synthase A n=3 Tax=Deinococcu... 141 2e-32 UniRef50_A1A6J3 Pseudouridylate synthase n=14 Tax=Magnoliophyta ... 140 4e-32 UniRef50_A8W1A9 Pseudouridylate synthase n=2 Tax=Bacillus RepID=... 140 6e-32 UniRef50_A9KR47 Pseudouridylate synthase n=1 Tax=Clostridium phy... 140 6e-32 UniRef50_Q2JFE6 tRNA pseudouridine synthase A n=44 Tax=Actinomyc... 140 6e-32 UniRef50_D1C2N5 Pseudouridylate synthase n=1 Tax=Sphaerobacter t... 140 6e-32 UniRef50_Q88XU9 tRNA pseudouridine synthase A n=6 Tax=Lactobacil... 139 9e-32 UniRef50_C1ZAN4 Pseudouridylate synthase n=1 Tax=Planctomyces li... 139 1e-31 UniRef50_B1W3X8 tRNA pseudouridine synthase A n=16 Tax=Actinomyc... 139 1e-31 UniRef50_A5FAV0 Pseudouridylate synthase n=14 Tax=Bacteroidetes ... 139 1e-31 UniRef50_B5YDX5 tRNA pseudouridine synthase A n=2 Tax=Dictyoglom... 138 2e-31 UniRef50_C1XI54 Pseudouridylate synthase n=1 Tax=Meiothermus rub... 138 2e-31 UniRef50_C6LCX6 Pseudouridylate synthase n=2 Tax=Lachnospiraceae... 138 2e-31 UniRef50_Q73KE3 tRNA pseudouridine synthase A n=1 Tax=Treponema ... 138 2e-31 UniRef50_C1TLE9 Pseudouridylate synthase n=3 Tax=Synergistaceae ... 137 3e-31 UniRef50_B0GAG0 Pseudouridylate synthase n=1 Tax=Dorea formicige... 137 4e-31 UniRef50_C5RIE6 Pseudouridylate synthase n=1 Tax=Clostridium cel... 137 4e-31 UniRef50_C8X4C1 Pseudouridylate synthase n=1 Tax=Desulfohalobium... 137 4e-31 UniRef50_A9NEH2 Pseudouridylate synthase n=1 Tax=Acholeplasma la... 137 5e-31 UniRef50_B5CS63 Pseudouridylate synthase n=6 Tax=Clostridiales R... 137 6e-31 UniRef50_A9B439 Pseudouridylate synthase n=1 Tax=Herpetosiphon a... 136 6e-31 UniRef50_D1YY68 Pseudouridylate synthase n=1 Tax=Methanocella pa... 136 9e-31 UniRef50_C1A3U6 Pseudouridylate synthase n=1 Tax=Gemmatimonas au... 135 1e-30 UniRef50_Q0W2P8 tRNA pseudouridine synthase A n=1 Tax=uncultured... 135 1e-30 UniRef50_Q6MDE3 tRNA pseudouridine synthase A 2 n=2 Tax=Parachla... 135 1e-30 UniRef50_Q1AU61 Pseudouridylate synthase n=1 Tax=Rubrobacter xyl... 135 1e-30 UniRef50_A0Z5L5 Pseudouridylate synthase n=1 Tax=marine gamma pr... 135 1e-30 UniRef50_C6WLZ4 Pseudouridylate synthase n=4 Tax=Actinomycetales... 135 1e-30 UniRef50_B4D9U5 Pseudouridylate synthase n=2 Tax=Verrucomicrobia... 135 1e-30 UniRef50_C3WLS9 Pseudouridylate synthase n=2 Tax=Fusobacterium R... 135 2e-30 UniRef50_A4CM73 Pseudouridylate synthase n=2 Tax=Flavobacteriale... 134 3e-30 UniRef50_A6LDA7 tRNA pseudouridine synthase A n=46 Tax=Bacteria ... 134 3e-30 UniRef50_C2D958 Pseudouridylate synthase n=1 Tax=Atopobium vagin... 134 4e-30 UniRef50_A6DH96 Pseudouridylate synthase n=1 Tax=Lentisphaera ar... 134 4e-30 UniRef50_C0QUR7 Pseudouridylate synthase n=4 Tax=Hydrogenotherma... 134 5e-30 UniRef50_B3EQM8 Pseudouridylate synthase n=1 Tax=Chlorobium phae... 133 5e-30 UniRef50_A8S765 Pseudouridylate synthase n=4 Tax=Ruminococcaceae... 132 9e-30 UniRef50_A9RTE3 Pseudouridylate synthase n=1 Tax=Physcomitrella ... 132 1e-29 UniRef50_D1N376 Pseudouridylate synthase n=1 Tax=Victivallis vad... 132 1e-29 UniRef50_Q30XU3 tRNA pseudouridine synthase A n=5 Tax=Desulfovib... 132 1e-29 UniRef50_Q6A6S8 tRNA pseudouridine synthase A n=6 Tax=Actinomyce... 132 2e-29 UniRef50_Q3Z951 Pseudouridylate synthase n=5 Tax=Dehalococcoides... 130 4e-29 UniRef50_B9Y957 Pseudouridylate synthase n=1 Tax=Holdemania fili... 130 4e-29 UniRef50_UPI0001BC54DA tRNA pseudouridine synthase A n=2 Tax=Fus... 130 4e-29 UniRef50_C4DMY7 Pseudouridylate synthase n=1 Tax=Stackebrandtia ... 130 5e-29 UniRef50_B5YGE4 tRNA pseudouridine synthase A n=1 Tax=Thermodesu... 130 5e-29 UniRef50_C8P3N2 Pseudouridylate synthase n=1 Tax=Erysipelothrix ... 129 7e-29 UniRef50_B7A9H2 Pseudouridylate synthase n=2 Tax=Thermaceae RepI... 129 9e-29 UniRef50_Q2LWJ8 Pseudouridylate synthase n=1 Tax=Syntrophus acid... 129 1e-28 UniRef50_Q73S41 tRNA pseudouridine synthase A n=39 Tax=Actinomyc... 129 1e-28 UniRef50_Q01WL4 tRNA pseudouridine synthase A n=3 Tax=Acidobacte... 128 2e-28 UniRef50_UPI00016BFD9D tRNA pseudouridine synthase A n=1 Tax=Epu... 127 3e-28 UniRef50_D1AG36 Pseudouridylate synthase n=1 Tax=Sebaldella term... 127 3e-28 UniRef50_A6GZH6 Pseudouridylate synthase n=2 Tax=Bacteroidetes R... 127 3e-28 UniRef50_A0B7V0 tRNA pseudouridine synthase A n=1 Tax=Methanosae... 127 3e-28 UniRef50_B6YQE4 tRNA pseudouridine synthase A n=1 Tax=Candidatus... 127 4e-28 UniRef50_D1XYC0 Pseudouridylate synthase n=2 Tax=Prevotella RepI... 127 4e-28 UniRef50_B5HPZ6 Pseudouridylate synthase n=1 Tax=Streptomyces sv... 127 4e-28 UniRef50_Q0SPF2 tRNA pseudouridine synthase A n=21 Tax=Borrelia ... 127 4e-28 UniRef50_Q72DL8 tRNA pseudouridine synthase A n=4 Tax=Desulfovib... 126 6e-28 UniRef50_C7RE26 Pseudouridylate synthase n=3 Tax=Anaerococcus Re... 126 7e-28 UniRef50_A6FXP9 Pseudouridylate synthase n=1 Tax=Plesiocystis pa... 125 1e-27 UniRef50_Q12VJ7 tRNA pseudouridine synthase A n=5 Tax=Archaea Re... 125 1e-27 UniRef50_Q2NIY3 tRNA pseudouridine synthase A n=4 Tax=Candidatus... 125 1e-27 UniRef50_Q8R601 tRNA pseudouridine synthase A n=14 Tax=Fusobacte... 125 2e-27 UniRef50_Q72I65 tRNA pseudouridine synthase A n=2 Tax=Thermus th... 125 2e-27 UniRef50_A8Z5T1 Pseudouridylate synthase n=4 Tax=Flavobacteriale... 124 4e-27 UniRef50_UPI000050FF8C pseudouridylate synthase I n=1 Tax=Brevib... 124 4e-27 UniRef50_B5JG47 Pseudouridylate synthase n=1 Tax=Verrucomicrobia... 123 6e-27 UniRef50_B3DQE2 tRNA pseudouridine synthase A n=12 Tax=Bifidobac... 123 7e-27 UniRef50_Q2S4S9 tRNA pseudouridine synthase A n=2 Tax=Rhodotherm... 122 2e-26 UniRef50_C9RMQ6 Pseudouridylate synthase n=1 Tax=Fibrobacter suc... 121 2e-26 UniRef50_C7ND49 Pseudouridylate synthase n=3 Tax=Leptotrichia Re... 121 3e-26 UniRef50_B8JBC1 Pseudouridylate synthase n=4 Tax=Anaeromyxobacte... 120 5e-26 UniRef50_A5KLX7 Pseudouridylate synthase n=3 Tax=Clostridiales R... 119 1e-25 UniRef50_A1BFF0 tRNA pseudouridine synthase A n=10 Tax=Chlorobia... 119 1e-25 UniRef50_A8SWG9 Pseudouridylate synthase n=1 Tax=Coprococcus eut... 119 1e-25 UniRef50_A4SAH5 Pseudouridylate synthase n=4 Tax=Mamiellales Rep... 119 1e-25 UniRef50_C7HSK8 Pseudouridylate synthase n=1 Tax=Anaerococcus va... 118 2e-25 UniRef50_UPI0001C30ED3 tRNA pseudouridine synthase A n=1 Tax=Con... 118 2e-25 UniRef50_C7LK25 Pseudouridylate synthase n=2 Tax=Candidatus Sulc... 118 2e-25 UniRef50_B3EU82 Pseudouridylate synthase n=1 Tax=Candidatus Amoe... 118 2e-25 UniRef50_Q6AD25 tRNA pseudouridine synthase A n=9 Tax=Bacteria R... 118 2e-25 UniRef50_A9FHM9 Pseudouridylate synthase n=1 Tax=Sorangium cellu... 118 2e-25 UniRef50_Q54RR6 Pseudouridylate synthase n=1 Tax=Dictyostelium d... 117 4e-25 UniRef50_D2MMG6 tRNA pseudouridine synthase A n=1 Tax=Bulleidia ... 117 4e-25 UniRef50_A4S4E5 Pseudouridylate synthase n=2 Tax=Ostreococcus Re... 117 6e-25 UniRef50_O66953 tRNA pseudouridine synthase A n=2 Tax=Aquificace... 116 6e-25 UniRef50_Q6UA45 Pseudouridylate synthase (Fragment) n=1 Tax=Buch... 116 8e-25 UniRef50_B0G612 Pseudouridylate synthase n=7 Tax=Bacteria RepID=... 115 2e-24 UniRef50_D2NRR5 Pseudouridylate synthase n=2 Tax=Rothia mucilagi... 115 2e-24 UniRef50_B7AQ15 Pseudouridylate synthase n=1 Tax=Bacteroides pec... 114 2e-24 UniRef50_B5CR77 Pseudouridylate synthase n=1 Tax=Ruminococcus la... 113 5e-24 UniRef50_B2UNB6 tRNA pseudouridine synthase A n=1 Tax=Akkermansi... 113 5e-24 UniRef50_Q6NKP7 Pseudouridylate synthase n=14 Tax=Embryophyta Re... 113 6e-24 UniRef50_B2S468 tRNA pseudouridine synthase A n=3 Tax=Treponema ... 113 6e-24 UniRef50_A8IW91 Pseudouridylate synthase (Fragment) n=1 Tax=Chla... 113 9e-24 UniRef50_A6TQL8 Pseudouridylate synthase n=1 Tax=Alkaliphilus me... 112 2e-23 UniRef50_B1AJH7 tRNA pseudouridine synthase A n=15 Tax=Ureaplasm... 111 2e-23 UniRef50_B1ZVD8 Pseudouridylate synthase n=2 Tax=Opitutaceae Rep... 110 5e-23 UniRef50_C7PRM5 Pseudouridylate synthase n=1 Tax=Chitinophaga pi... 110 6e-23 UniRef50_B6WBX6 Pseudouridylate synthase n=1 Tax=Anaerococcus hy... 109 8e-23 >UniRef50_Q15VG2 tRNA pseudouridine synthase A n=12 Tax=Gammaproteobacteria RepID=TRUA_PSEA6 Length = 263 Score = 361 bits (927), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 168/260 (64%), Positives = 205/260 (78%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +IALG+EYDG++++GWQRQNEV SVQ+ LE+AL+++ANEPI V CAGRTDAGVH TGQVV Sbjct: 2 RIALGVEYDGARFHGWQRQNEVISVQQHLEEALTRIANEPIRVVCAGRTDAGVHATGQVV 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HFETT+ R D AWTLG+N LP I+VRWVK VP+DFHARFSATARRYRYIIYN+ LR Sbjct: 62 HFETTSQRPDRAWTLGINTYLPDTISVRWVKAVPEDFHARFSATARRYRYIIYNNTLRSG 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 +L+ GVTH Y LD E MH AAQ L+G++DF+SFRAV CQ++T R + HI V R G Y+ Sbjct: 122 ILANGVTHIYGDLDHELMHEAAQKLVGKHDFSSFRAVNCQAKTATRTMSHIRVKRMGDYI 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 V+D++ANAF+HHMVRNI G+L+ +G +P W+ ELL KDRT A TA GLYLV V Sbjct: 182 VIDVQANAFLHHMVRNITGTLVAIGHKEKPVEWVDELLEVKDRTKAGITALPNGLYLVHV 241 Query: 251 DYPDRYDLPKPPMGPLFLAD 270 YP+ + LPK MGPLFLAD Sbjct: 242 TYPETFALPKLKMGPLFLAD 261 >UniRef50_B8D8Z8 tRNA pseudouridine synthase A n=6 Tax=Enterobacteriaceae RepID=TRUA_BUCA5 Length = 266 Score = 325 bits (832), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 150/260 (57%), Positives = 192/260 (73%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 V ALG+EYDGS Y+GWQRQ V S+QE++EKALS +AN I V CAGRTDAGVH GQ Sbjct: 6 VKTFALGVEYDGSYYHGWQRQKIVPSIQEEIEKALSIIANHKIDVVCAGRTDAGVHSIGQ 65 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V+HF+TTA RK ++W++GVN+ L +I+V WVK V ++FHAR+SA R YRYIIYN+ LR Sbjct: 66 VIHFKTTANRKKSSWSIGVNSYLSENISVVWVKEVTENFHARYSAITRSYRYIIYNYSLR 125 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 A+ + H Y L+ ++MH AQ LLGE+DFTSFRA+ CQS +PWRN+ +NV R Sbjct: 126 SAIFQTKLNHIYRKLNVDKMHFEAQFLLGEHDFTSFRALGCQSHSPWRNITKLNVFRFHN 185 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 +VVVDI AN+F+HHMVRNIVGSL+EVG + E WI +LL KDR+ A ATA A+GLYLV Sbjct: 186 WVVVDITANSFLHHMVRNIVGSLIEVGISKKKEYWIKDLLEKKDRSHAGATAPAKGLYLV 245 Query: 249 AVDYPDRYDLPKPPMGPLFL 268 V+YP ++LP+ +F Sbjct: 246 YVEYPLHFNLPRSAYTSIFF 265 >UniRef50_Q31HH6 tRNA pseudouridine synthase A n=4 Tax=Gammaproteobacteria RepID=TRUA_THICR Length = 262 Score = 304 bits (778), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 144/256 (56%), Positives = 183/256 (71%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 +A+GIEY G+ Y GWQ Q SVQ++LEKALS +A+EPI + CAGRTD GVH GQ+ H Sbjct: 4 LAIGIEYQGTAYCGWQHQKHCDSVQQQLEKALSYIADEPIGLNCAGRTDTGVHAIGQIAH 63 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 FET A R D AW GVN LP DI V WVK +P+DFHARFSA AR+YRY+I+N + A+ Sbjct: 64 FETNASRPDKAWIQGVNTQLPNDIRVTWVKPMPEDFHARFSAVARQYRYVIFNRPVHSAI 123 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVV 191 L+ VT PLD ++MH AAQ LLGENDF+SFRA CQ+ RNV ++ V+R G +V Sbjct: 124 LANRVTWENRPLDVKKMHAAAQDLLGENDFSSFRAAGCQASHANRNVQYLQVSRQGNFVF 183 Query: 192 VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVD 251 VDI+ANAF+HHMVRNIVG+L+EVG ++P W++ELL +DRT A TA A GLY V Sbjct: 184 VDIQANAFLHHMVRNIVGTLLEVGRLDKPVEWVSELLKKQDRTQAGMTAPAAGLYFVNAL 243 Query: 252 YPDRYDLPKPPMGPLF 267 YP+ ++LP+ + L Sbjct: 244 YPESFELPRVVLDELL 259 >UniRef50_A1U0X5 Pseudouridylate synthase n=7 Tax=Bacteria RepID=A1U0X5_MARAV Length = 302 Score = 296 bits (759), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 139/259 (53%), Positives = 184/259 (71%), Gaps = 1/259 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 ++A+ EYDG ++GWQ Q VRSV+ +L +A ++VA+ P+ + CAGRTDAGVH + QV Sbjct: 18 RVAIIFEYDGQAFHGWQLQKSGVRSVEAELSRAAARVADHPVDLVCAGRTDAGVHASFQV 77 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 HF+T ++R +W +G+N LP DI+V W DFHARFSA RRYRY+IYNH +RP Sbjct: 78 AHFDTPSVRNLRSWVMGMNTALPDDISVHWAGNGQGDFHARFSAIYRRYRYVIYNHPVRP 137 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 + V+ + PLDAERMHRA+Q L+GE+DF+SFRA CQSRTP R + I+VTR G + Sbjct: 138 GIQRGQVSWTFRPLDAERMHRASQALVGEHDFSSFRAAGCQSRTPVRFLEQISVTRCGEF 197 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 VV+D++ANAF+HHMVRNI G+LM VG QPE WI ++L +DR LA TA GLYLV Sbjct: 198 VVIDVQANAFLHHMVRNIAGALMAVGNGQQPEDWIGDILECRDRKLAGVTAPPYGLYLVD 257 Query: 250 VDYPDRYDLPKPPMGPLFL 268 V YP+ + +PK GP F+ Sbjct: 258 VGYPESFGIPKALCGPAFV 276 >UniRef50_Q1QY44 Pseudouridylate synthase n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QY44_CHRSD Length = 290 Score = 294 bits (753), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 143/256 (55%), Positives = 175/256 (68%) Query: 14 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFE 73 +G+EYDGS Y GWQR SVQ LE ALS++AN P+ V C+GRTD+GVH T QVVHF+ Sbjct: 1 MGVEYDGSAYCGWQRLKHAASVQGTLEAALSRIANAPVQVLCSGRTDSGVHATRQVVHFD 60 Query: 74 TTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 R AW G NANLP D+AVRWV V DDFHAR SA ARRYRY+I N RP + Sbjct: 61 APVTRTQKAWLFGANANLPRDVAVRWVVPVADDFHARLSALARRYRYVILNQPSRPVLER 120 Query: 134 KGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVD 193 T EPLDAERMH AAQ L+GE+DF+SFRA CQS++ WR+V I V R+G VV+D Sbjct: 121 ANATWCREPLDAERMHAAAQALVGEHDFSSFRAAGCQSKSRWRHVHFIEVRRYGQLVVID 180 Query: 194 IKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYP 253 I+ANAF+HHM+RNI G+L+ VG + ++ ELLA +DRT TA GL+ V Y Sbjct: 181 IQANAFLHHMIRNIAGALVAVGRGDHSTGYLGELLALRDRTQGNVTAPGCGLHFVDALYD 240 Query: 254 DRYDLPKPPMGPLFLA 269 +R+ LPK P+GP LA Sbjct: 241 ERFVLPKEPLGPNLLA 256 >UniRef50_B3PFN7 Pseudouridylate synthase n=2 Tax=Gammaproteobacteria RepID=B3PFN7_CELJU Length = 299 Score = 289 bits (739), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 139/261 (53%), Positives = 187/261 (71%), Gaps = 1/261 (0%) Query: 11 KIALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 ++ALG+EY G+ ++G+Q Q N V++VQ+ LEKALS VA+EPIT+ CAGRTDAGVH T QV Sbjct: 30 RVALGVEYKGADFHGFQVQPNGVKTVQQSLEKALSIVADEPITLVCAGRTDAGVHATNQV 89 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 +HF+T A R AW G+ +LP I +RW + V FHARFSA +R YRY++ + P Sbjct: 90 IHFDTLAQRPLKAWMRGLGPHLPDTIGIRWAQDVSPGFHARFSAQSRTYRYLMSDGASSP 149 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 A+L V+ PLD M + A CL+GE+DFTSFRA QCQ+++P R + ++++ R G Sbjct: 150 ALLHDQVSWSSRPLDVALMRQGAACLIGEHDFTSFRATQCQAKSPVRRIEYLHLVRRGEL 209 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 +V++I+ANAF+HHMVRNIVG LM+VGA + SW+ ++LAA+DRT A ATAK GLYLVA Sbjct: 210 IVMEIRANAFLHHMVRNIVGVLMQVGAGFKKPSWVGDVLAARDRTAAGATAKPNGLYLVA 269 Query: 250 VDYPDRYDLPKPPMGPLFLAD 270 VDYP + LP GPLF + Sbjct: 270 VDYPQEFSLPCCLPGPLFFPE 290 >UniRef50_Q8K9U4 tRNA pseudouridine synthase A n=2 Tax=Buchnera aphidicola RepID=TRUA_BUCAP Length = 263 Score = 281 bits (720), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 122/249 (48%), Positives = 178/249 (71%), Gaps = 1/249 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 K ALG+EYDGS Y+GWQ Q + ++Q ++EKALS++AN + V CAGRTD+GVH GQV+ Sbjct: 8 KFALGVEYDGSYYHGWQSQKGLSTIQSEIEKALSKIANHQVNVICAGRTDSGVHSIGQVI 67 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF + + R D +W +GVN+ L +I+V+W+K V ++F+AR+SA +R YRYIIYNH+ R A Sbjct: 68 HFTSISFRSDFSWIVGVNSYLSKNISVKWIKEVSENFNARYSAISRSYRYIIYNHKCRSA 127 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + H Y+ L+ ++M+ AQ LLGE+DF+SFR+ CQSR+P+R + +N+ R V Sbjct: 128 IFRNRSNHVYKELNVDKMYFEAQSLLGEHDFSSFRSSGCQSRSPFRTITDLNIRRLKNLV 187 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 ++DI AN+F++HMVRNIVGSL+++ N +++I ++L KDR A T A GLYL V Sbjct: 188 IIDITANSFLYHMVRNIVGSLIQIN-DNTKKNYIKKILDKKDRNYAGPTVSARGLYLFFV 246 Query: 251 DYPDRYDLP 259 YP ++LP Sbjct: 247 KYPMCFNLP 255 >UniRef50_A5WGT0 Pseudouridylate synthase n=6 Tax=Moraxellaceae RepID=A5WGT0_PSYWF Length = 302 Score = 280 bits (717), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 137/270 (50%), Positives = 182/270 (67%), Gaps = 4/270 (1%) Query: 2 SDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDA 61 S Q P ALG+E++G+ Y GWQRQ EV VQ+ LE+ LS++ANEPI V AGRTDA Sbjct: 29 SSTPQHPAQTYALGVEFNGANYRGWQRQQEVLCVQQVLEETLSKIANEPIEVVAAGRTDA 88 Query: 62 GVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYI 121 GVHG + HF T+A R W G N+ LP DIA+RW++ +PD FHARF A ARRYRYI Sbjct: 89 GVHGGNMLAHFTTSAKRGVYNWLRGANSLLPDDIAIRWIQPMPDTFHARFGAIARRYRYI 148 Query: 122 IYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHI 181 N RPAVL+ VTH +EPLD M +AA+ ++G +DF+SFRA CQS+ P RN+ H Sbjct: 149 TLNQPQRPAVLNHLVTHIHEPLDLALMQQAAEHIVGTHDFSSFRAAACQSKQPVRNIHHA 208 Query: 182 NVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHN-QPESWIAELLAAKDRTLAAATA 240 + +HG ++V DI+A+ F+HHMVRN++G+L +G QPE ++ +L AKDRT+A TA Sbjct: 209 KLFKHGEFIVFDIQADGFLHHMVRNLMGTLFAIGKGELQPEDYL-RILQAKDRTIAPPTA 267 Query: 241 KAEGLYLVAVDYPDRYD--LPKPPMGPLFL 268 +GLY + YP+ LPK P+ P +L Sbjct: 268 PPDGLYFINAYYPEPMQALLPKVPLAPQWL 297 >UniRef50_Q6FEV2 tRNA pseudouridine synthase A n=383 Tax=Proteobacteria RepID=TRUA_ACIAD Length = 271 Score = 275 bits (704), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 129/259 (49%), Positives = 179/259 (69%), Gaps = 1/259 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 + A+GIE+ G +Y GWQ Q V S+QE +EK LS++A+EPI + AGRTDAGVH T V Sbjct: 4 RYAVGIEFCGIRYRGWQTQQAGVPSIQETIEKVLSKIADEPIILHGAGRTDAGVHATNMV 63 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 HF+T A+R W +G N+ LP DI+++W+K + DFHARF ATARRYRY++YN RP Sbjct: 64 AHFDTNAIRPQRGWLMGANSQLPKDISIQWIKEMNTDFHARFKATARRYRYVVYNTLNRP 123 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 A+L K VTH Y+ LD ++M AA+ G ++F +FRA CQS P R++ H +TRHG Y Sbjct: 124 ALLHKQVTHVYQTLDVDKMMLAARKFEGTHNFETFRAASCQSSQPVRHLSHCRLTRHGRY 183 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 +V+DI+A+ F+HHMVRNI+G L+E+G I + AA+DR A TA A+GLY + Sbjct: 184 LVLDIQADGFLHHMVRNIMGCLLEIGQGCYEIEHIDTMFAAQDRKAAGVTAPADGLYFIQ 243 Query: 250 VDYPDRYDLPKPPMGPLFL 268 YP+ ++LP+ P+GP +L Sbjct: 244 AYYPEHFELPQHPLGPHWL 262 >UniRef50_Q21IY8 Pseudouridylate synthase n=2 Tax=Gammaproteobacteria RepID=Q21IY8_SACD2 Length = 289 Score = 262 bits (670), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 137/264 (51%), Positives = 172/264 (65%), Gaps = 6/264 (2%) Query: 11 KIALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 ++ L +EYDGS Y G+QRQ +VQ +LEKALS VANEP+T+ CAGRTDAGVH T Q+ Sbjct: 24 RVVLQVEYDGSPYCGFQRQLTAPNTVQAELEKALSSVANEPVTIVCAGRTDAGVHATSQI 83 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 VHF+T A R AW GVN +LP I V K V DFHARFSA +R YRY+I+ ++R Sbjct: 84 VHFDTLAGRPSKAWLQGVNTHLPFSIRVISAKEVGFDFHARFSALSRTYRYVIHVSQVRS 143 Query: 130 AVLSKGVTHFYEP-----LDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT 184 A L GVT P LD M AA LLGE+DFTSFR V CQ+ +P R + +V Sbjct: 144 AHLVNGVTWVKLPQKLSGLDVPAMQEAASLLLGEHDFTSFRTVHCQAASPVRTMEVADVV 203 Query: 185 RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 + G ++VV + ANAF+HHMVRNIVG L+ VG S + EL+ +DR+ AA TA A G Sbjct: 204 QMGEFIVVQVTANAFLHHMVRNIVGVLLRVGRGELKPSRVTELIELRDRSQAAETAPAAG 263 Query: 245 LYLVAVDYPDRYDLPKPPMGPLFL 268 LY V V YP+R+ +P GP+FL Sbjct: 264 LYFVNVQYPERFAMPMHCQGPIFL 287 >UniRef50_A7C1F2 Pseudouridylate synthase n=1 Tax=Beggiatoa sp. PS RepID=A7C1F2_9GAMM Length = 272 Score = 254 bits (650), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 121/250 (48%), Positives = 162/250 (64%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +IALG+EY+G+ ++GWQ Q RSVQ ++E ALS+VAN P+ V CAGRTD GVH GQV+ Sbjct: 2 RIALGVEYNGANFFGWQFQPHARSVQGEVEIALSKVANHPVKVICAGRTDTGVHAIGQVI 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 H + T R +W LG N+NLP D+++ W ++V ++FHARFSA AR YRYII N RPA Sbjct: 62 HADVTVQRSTRSWVLGTNSNLPIDVSMLWAQSVDNNFHARFSAQARHYRYIILNRPTRPA 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 +L+K VT L+ ERM A L+G +DF + +TP R + + V+R V Sbjct: 122 LLTKQVTWERRILEVERMQIAGNYLIGTHDFHLIVPFPVKQKTPIRTISRLMVSRMDDRV 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 ++DI ANAF+HHMVRNI G L+ +GA + W +L A+DRT+ TA A GLY + Sbjct: 182 IIDISANAFLHHMVRNIAGVLITIGAGEKRPKWADTVLEAQDRTMGGITAPAAGLYFCGI 241 Query: 251 DYPDRYDLPK 260 DYP Y PK Sbjct: 242 DYPASYQFPK 251 >UniRef50_A7NCA0 tRNA pseudouridine synthase A n=19 Tax=Francisella RepID=TRUA_FRATF Length = 258 Score = 254 bits (649), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 121/241 (50%), Positives = 163/241 (67%) Query: 14 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFE 73 L IEY G Y GWQRQ+ SVQE+LEKALS++AN+ I V CAGRTD GVH T Q+V+F Sbjct: 6 LQIEYFGKNYCGWQRQSHSLSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQIVNFY 65 Query: 74 TTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 + A R +AW GVNA LP DI + V+ V ++F++RF+A R Y YIIYN + + Sbjct: 66 SNAYRPLSAWQRGVNALLPQDIKILAVQQVNNNFNSRFTAINRTYNYIIYNSATSSPIFA 125 Query: 134 KGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVD 193 + LD ++M++A + LLGE DF+SFR+ QCQS TP+RN+ + G ++V + Sbjct: 126 EHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQGSFIVFE 185 Query: 194 IKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYP 253 + NAF+HHM+RN+VGSL++VG + WI +L AKDRT AA TAKA GLY V V+YP Sbjct: 186 VVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLYFVGVEYP 245 Query: 254 D 254 + Sbjct: 246 E 246 >UniRef50_C8NBU9 Pseudouridylate synthase n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NBU9_9GAMM Length = 265 Score = 251 bits (642), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 135/263 (51%), Positives = 180/263 (68%), Gaps = 7/263 (2%) Query: 11 KIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 + A+G+EYDG+ Y GWQRQ ++QE+LE ALSQVA P+ CAGRTDAGVH T QV Sbjct: 4 RYAVGLEYDGTHYAGWQRQPFFAATIQEQLECALSQVAAHPVETTCAGRTDAGVHATAQV 63 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 +HF+T A R D AW G N LP DI ++W++ VP +FHAR+SA R YRY+I HR +P Sbjct: 64 IHFDTGAARSDFAWLAGANRYLPADIRLQWIRAVPAEFHARYSARERHYRYLI-RHRAQP 122 Query: 130 AVLSKGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV-TRHG 187 + L H++ + LDA MH AAQ L+GE+DF++FRA +CQ+++PWR + I+V RHG Sbjct: 123 SALWARRCHWHKKSLDAAAMHSAAQALIGEHDFSAFRAAECQAKSPWRFIRSIDVRERHG 182 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 ++ VDI NAF+HHMVRNIVG+L+ VG + +W E+LA++DR A TA A+GLY Sbjct: 183 -WIAVDICGNAFLHHMVRNIVGTLLAVGDGRRDTAWPGEVLASRDRRCAGVTAPAQGLYF 241 Query: 248 VAVDYPDRYDLPKPPMGPLFLAD 270 V YP Y LP P P ++ D Sbjct: 242 HGVAYPREYALPAFP--PAWIPD 262 >UniRef50_Q8D2P5 tRNA pseudouridine synthase A n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=TRUA_WIGBR Length = 264 Score = 244 bits (623), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 108/250 (43%), Positives = 167/250 (66%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 K+A GI Y G+ Y GWQ Q + S+QE +E AL + + E I ++CAGRTDA VH QVV Sbjct: 3 KLAAGISYQGNNYCGWQSQKNIISIQEYVELALFKFSGEKIKIYCAGRTDAKVHALLQVV 62 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF T R W LGVN+ LP DI++ WV V ++FHAR+SA A++Y Y+I+N+ R Sbjct: 63 HFYTDIKRSYRQWILGVNSYLPYDISIMWVIKVHNNFHARYSAIAKKYLYLIHNNISRSG 122 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + K + + L+ M +AAQ L+G++DF+SF+ +CQS+T +R + +I + ++ Y+ Sbjct: 123 IFRKYCFNVFISLNINDMKKAAQKLIGKHDFSSFKGSECQSKTTYRVIYYIRINKYKEYI 182 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 V+IKAN+F++HM+RNI+G+L+E+G + + W++ELL K+ + +A +GLYL V Sbjct: 183 FVEIKANSFLNHMMRNIIGNLIEIGKGKKSKEWMSELLFLKNNKFSIFSADPKGLYLSNV 242 Query: 251 DYPDRYDLPK 260 YP +++PK Sbjct: 243 YYPFYFNIPK 252 >UniRef50_A4BHD0 Pseudouridylate synthase n=1 Tax=Reinekea blandensis MED297 RepID=A4BHD0_9GAMM Length = 286 Score = 243 bits (621), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 117/261 (44%), Positives = 169/261 (64%), Gaps = 2/261 (0%) Query: 10 YKIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 ++I L +EY G+ ++GWQ Q V ++Q LE A+++VA+EP++ AGRTDAGVH T Q Sbjct: 14 HRIVLCLEYKGTAFHGWQIQKSGVSTIQAALEAAIAKVADEPVSTIVAGRTDAGVHATNQ 73 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 +VHF+T A R D W +G+N LP DI+V+WV V + FHARFSA R YR+II+N+ ++ Sbjct: 74 IVHFDTRAQRSDYGWKMGINGRLPDDISVKWVTQVDEHFHARFSAQERAYRFIIHNNWVK 133 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 A+L + T LD M +AA LLG +DF+SFRA +CQ+ +P R + + V R G Sbjct: 134 SALLHEVTTWEQYELDVGLMQQAANRLLGTHDFSSFRAAECQAHSPVRTLRELTVARFGE 193 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 ++V+ +A+ F+HHMVRN+VG ++ +G +P W +++L KDR TAK GLY V Sbjct: 194 FIVIQARADGFLHHMVRNLVGVMLPIGRGRKPVDWASDVLNYKDRRRGGVTAKGNGLYFV 253 Query: 249 AVDYPDRYDLPKPPMGPLFLA 269 Y + DLP GP FL+ Sbjct: 254 RASY-NVGDLPSADPGPAFLS 273 >UniRef50_Q0AGX7 tRNA pseudouridine synthase A n=26 Tax=Proteobacteria RepID=TRUA_NITEC Length = 277 Score = 243 bits (619), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 122/251 (48%), Positives = 163/251 (64%), Gaps = 4/251 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 KI L +EYDG Y GWQ+Q + SVQ +LE ALS++A+ I V AGRTDAGVH QVV Sbjct: 2 KIVLILEYDGRGYCGWQKQPDRISVQSRLESALSRIASSQIQVVAAGRTDAGVHALCQVV 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HFET +R AW G NA LP DI+V W V DDFHARFSAT R Y Y + + RP Sbjct: 62 HFETHVIRPLTAWVRGANALLPDDISVLWASEVNDDFHARFSATERTYLYYLLSRPARPG 121 Query: 131 VL--SKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + G TH+ LD E+M AA+ L+GE+DF++FR+ +CQ++ R ++ +++++ Sbjct: 122 IFQGKTGWTHY--SLDLEKMQTAARFLIGEHDFSAFRSAECQAKNAIRKLVRLDISQSEQ 179 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + V + ANAF+HHMVRNI+G+L+ +G P WI LL +DRTLAA T +GLYL Sbjct: 180 FFVFEFCANAFLHHMVRNILGALIYIGQGKYPPEWIQILLGKRDRTLAAPTFSPDGLYLA 239 Query: 249 AVDYPDRYDLP 259 V Y R++LP Sbjct: 240 GVRYDARWNLP 250 >UniRef50_C5T803 Pseudouridylate synthase n=2 Tax=Comamonadaceae RepID=C5T803_ACIDE Length = 289 Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 119/261 (45%), Positives = 164/261 (62%), Gaps = 12/261 (4%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++ALG+ Y+G +Y GWQ Q +VQ+ LE AL + + ++ CAGRTDAGVHG QVV Sbjct: 19 RVALGVSYNGQRYNGWQSQPSGNTVQDHLEAALGRFTTQQVSTLCAGRTDAGVHGLMQVV 78 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+TT +R DA+W G NA LP DIAV+W + VP FHAR SA ARRY Y++ +RP+ Sbjct: 79 HFDTTLVRPDASWVRGTNAFLPQDIAVQWARAVPSGFHARASAVARRYAYVLLQSPVRPS 138 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR----- 185 V + V + L+ + M +AA LLGE+DFTSFRA CQ+++P + + I++TR Sbjct: 139 VEAGRVGWVFNALNEDAMRQAALRLLGEHDFTSFRASACQAKSPVKTLQRIDITRTPCPR 198 Query: 186 -------HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAA 238 Y + +ANAF+HHM+RNI+GSL+ VG +P SWI+E+L A R AA Sbjct: 199 ASAAGEFDACYWRFEFEANAFLHHMIRNIMGSLVAVGKGTKPPSWISEVLDAHSRDAAAP 258 Query: 239 TAKAEGLYLVAVDYPDRYDLP 259 T +GLY Y ++ LP Sbjct: 259 TFSPDGLYFQGPVYAPQWGLP 279 >UniRef50_A1AXN3 Pseudouridylate synthase n=3 Tax=Bacteria RepID=A1AXN3_RUTMC Length = 247 Score = 238 bits (606), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 110/245 (44%), Positives = 166/245 (67%), Gaps = 1/245 (0%) Query: 11 KIALGIEYDGSKYYGWQRQN-EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 KIALG+ Y G+ ++GWQ Q +R+VQ+ +E+ALS VAN P+ VFC+GRTDAGVH T QV Sbjct: 2 KIALGVAYLGTNFHGWQCQKPNIRTVQQVVEQALSSVANHPVRVFCSGRTDAGVHATCQV 61 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 +HFET R++ W G NANLP D+ WVK V D+FHARFSA AR+Y Y I+N ++R Sbjct: 62 IHFETNIKRENKVWLFGGNANLPSDVNFTWVKHVNDNFHARFSAIARQYNYKIHNTKVRC 121 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 ++++ + LD M++A++ L+G+++F++FR CQ+++ + + I + + Sbjct: 122 SIITAHSLWESKKLDIMAMNKASKYLIGKHNFSAFRGSLCQAKSSIKTIEFIKLNKCDDN 181 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 +++DIKA+AF+HHMVRNIVG+L++VG + W+ E+L K R AA A + GLY + Sbjct: 182 ILLDIKADAFLHHMVRNIVGTLLKVGKGEKSIEWVKEILDNKQRKQAAPAAPSHGLYFIK 241 Query: 250 VDYPD 254 Y + Sbjct: 242 AFYSN 246 >UniRef50_B1XV49 tRNA pseudouridine synthase A n=97 Tax=Betaproteobacteria RepID=TRUA_POLNS Length = 276 Score = 238 bits (606), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 113/261 (43%), Positives = 160/261 (61%), Gaps = 10/261 (3%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANE------PITVFCAGRTDAGVH 64 +IALG++YDGS Y GWQ Q +VQ +LEKA+S E PI AGRTD GVH Sbjct: 2 RIALGLQYDGSPYSGWQTQVNHNTVQNELEKAISAFVGEQACVVKPINTITAGRTDTGVH 61 Query: 65 GTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYN 124 GQVVHF+T R+D +W GVN+ L I + W K V ++F ARFSA R Y Y ++ Sbjct: 62 ALGQVVHFDTNVEREDFSWVRGVNSFLSSSIVINWAKPVSEEFCARFSAYEREYIYALHA 121 Query: 125 HRLRPAVLSKGVTHFYEP----LDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMH 180 R + + P D E M ++A+CL+GE+DF+SFR+ +CQS+TP + + Sbjct: 122 GPCRSPMAHSRAGYLMLPPSQWFDIEAMQKSAECLIGEHDFSSFRSSECQSKTPIKTIYL 181 Query: 181 INVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATA 240 I + P++ I+ NAF+HHM+RN+VG +++G Q W+AE+LAAK+R +AA T Sbjct: 182 IEIISKQPWLYFRIRGNAFLHHMIRNLVGCFLQIGQGKQTSQWMAEVLAAKNRQIAAPTF 241 Query: 241 KAEGLYLVAVDYPDRYDLPKP 261 A+GLYL + YP + +P+P Sbjct: 242 MADGLYLAKITYPQEFAIPQP 262 >UniRef50_B9TJ99 Pseudouridylate synthase n=4 Tax=cellular organisms RepID=B9TJ99_RICCO Length = 283 Score = 234 bits (598), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 115/249 (46%), Positives = 160/249 (64%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++ LG+EYDGS++ GWQ Q +VQ+ L+ AL+Q+A + V AGRTDAGVH QV Sbjct: 26 RVVLGLEYDGSRFCGWQSQPSGAAVQDCLQTALAQMAGHEVKVSAAGRTDAGVHALSQVA 85 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+T R AW GVNA LP + V W V +FHARFSA R Y+Y++ + PA Sbjct: 86 HFDTAVTRPQNAWVRGVNAFLPTGVRVLWASEVDVEFHARFSAERRSYQYVLQVSPVAPA 145 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 VLS V ++ PLD + M AA LLGE+DF++FRA +CQ++TP ++++ ++ + + Sbjct: 146 VLSGKVGWYHRPLDLKAMRNAASILLGEHDFSAFRASECQAKTPIKHLIQADIRQFDNVI 205 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + + A+AF+HHMVRN+VGSL+ VG P W+ LL KDR LAA T +GLYL V Sbjct: 206 LFEFTASAFLHHMVRNLVGSLVYVGKGEHPPEWMRTLLEQKDRRLAAPTFMPDGLYLTGV 265 Query: 251 DYPDRYDLP 259 Y R++LP Sbjct: 266 HYDPRWNLP 274 >UniRef50_C0EKI9 Pseudouridylate synthase n=6 Tax=Neisseriaceae RepID=C0EKI9_NEIFL Length = 281 Score = 214 bits (545), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 108/249 (43%), Positives = 154/249 (61%), Gaps = 1/249 (0%) Query: 13 ALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 AL + YDGS++YGWQ+Q ++ +VQ LE+ALS +A E I AGRTD GVH T QVVH Sbjct: 16 ALTLSYDGSRFYGWQKQAGDLPTVQTALEQALSSIAGEQINTIVAGRTDTGVHATAQVVH 75 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 F+T+ R + AW GVNA+LP +AV + V FHARF A R YRY++ + +R + Sbjct: 76 FDTSVSRPEQAWVRGVNAHLPDGVAVLVAQKVAPHFHARFDAYGRHYRYLLESSPVRSPL 135 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVV 191 L V + LD M +AA L GE+DF+SFRA +CQ+++P + + ++ Y+ Sbjct: 136 LVGRVGWTHLKLDLNLMRQAAALLEGEHDFSSFRAAECQAKSPVKTLYSTKISGTSRYLC 195 Query: 192 VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVD 251 +D+ NAF+HHMVRNI+G+L+ VG+ + AK R A T ++GLYL VD Sbjct: 196 LDLHGNAFLHHMVRNIMGALVYVGSGRISVDEFESVFHAKSRLKAPPTFMSDGLYLTGVD 255 Query: 252 YPDRYDLPK 260 YPD + + + Sbjct: 256 YPDEFGVTQ 264 >UniRef50_UPI0000F2F657 tRNA pseudouridine synthase A n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=UPI0000F2F657 Length = 205 Score = 214 bits (544), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 96/200 (48%), Positives = 137/200 (68%) Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V HF+T A+R + W +G N+ LP DI+++W+K + ++FHARF ATARRYRY++YN R Sbjct: 2 VAHFDTNAIRPERGWIMGANSQLPKDISIQWIKQMDEEFHARFKATARRYRYVVYNAPHR 61 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 PA+L K VTH Y+ LD ++M +AA G ++F +FRA CQS P R+V H + HG Sbjct: 62 PALLHKQVTHIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKHCRLFEHGR 121 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Y+V+DI+A+ F+HHMVRNI+G L+E+G I + AA+DR A TA +GLY + Sbjct: 122 YLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDAMFAAEDRKAAGITAPPDGLYFI 181 Query: 249 AVDYPDRYDLPKPPMGPLFL 268 YP+++DLP PP+GP +L Sbjct: 182 QCYYPEQFDLPHPPLGPHWL 201 >UniRef50_A0L9F6 Pseudouridylate synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9F6_MAGSM Length = 270 Score = 214 bits (544), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 117/261 (44%), Positives = 159/261 (60%) Query: 5 QQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVH 64 +Q + + + +E+DGS + GWQ Q SVQ+ LE+AL+ + NEPI V +GRTDAGVH Sbjct: 8 KQVGLQRFRITVEFDGSAFSGWQSQQNAPSVQQALEQALAPLHNEPIRVHGSGRTDAGVH 67 Query: 65 GTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYN 124 TGQV HF+ A R A + +N P IAV + V + FHAR+ A R+Y Y I Sbjct: 68 ATGQVAHFDAPAHRDAATYLRILNVRTPHSIAVLACQPVAESFHARYDAYYRQYLYRINT 127 Query: 125 HRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT 184 ++ PA+ V H+ LDAER+ A+ LLG +DF+SFRA CQS++P + + I Sbjct: 128 RKIPPALERSRVWHYPYLLDAERLAEASALLLGTHDFSSFRAAGCQSKSPVKFMRLIQWQ 187 Query: 185 RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 + G V I ANAF+ HMVRN+VG+L+ VG + P + +AELLAA+DR A TA A G Sbjct: 188 QRGDEWQVSIGANAFLQHMVRNLVGTLVLVGKGDWPVARVAELLAARDRVQAGPTAPAWG 247 Query: 245 LYLVAVDYPDRYDLPKPPMGP 265 LYL + YP P PP+ P Sbjct: 248 LYLTHICYPGDQGEPCPPITP 268 >UniRef50_A9BNH5 tRNA pseudouridine synthase A n=9 Tax=cellular organisms RepID=TRUA_DELAS Length = 282 Score = 210 bits (534), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 107/272 (39%), Positives = 155/272 (56%), Gaps = 22/272 (8%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++ALG+ Y+G +Y GWQ Q ++Q+ LE AL + A + + CAGRTDAGVHG QVV Sbjct: 2 RVALGVAYNGQRYSGWQSQLSGNTIQDHLEAALGRFAAQEVHTLCAGRTDAGVHGLMQVV 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+T R +W G N LP DIAV+W + VPD FH+R ATARRY Y++ +RP+ Sbjct: 62 HFDTPLDRAPFSWVRGTNTFLPPDIAVQWAQPVPDAFHSRACATARRYAYVLLQSPVRPS 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR----- 185 V + V + LD + M AA+ LLGE+DF+SFRA CQ+++P + + +++TR Sbjct: 122 VEAGRVGWVFHALDGDAMQAAARHLLGEHDFSSFRASGCQAKSPVKTLHRLSITRRMAGD 181 Query: 186 -----------------HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELL 228 Y + + +AF+HHMVRNI+G L+ +G W+ ++L Sbjct: 182 GAQMAAASSMRPGDAAMECCYWRFEFEGSAFLHHMVRNIMGCLIAIGQGTYAPQWMQQVL 241 Query: 229 AAKDRTLAAATAKAEGLYLVAVDYPDRYDLPK 260 A+ R AA T +GLY + Y + LP Sbjct: 242 DARSRDAAAPTFSPDGLYFLGPVYDPSWGLPS 273 >UniRef50_UPI0000E87E98 tRNA pseudouridine synthase A n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87E98 Length = 264 Score = 206 bits (524), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 93/250 (37%), Positives = 147/250 (58%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +IA + Y+G + GWQ+Q +V+++Q +E AL+++A + + +GRTD+GVH GQ++ Sbjct: 2 RIACSVSYNGYGFSGWQKQPDVKTIQGLIESALTEIAKDTVITHASGRTDSGVHALGQII 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+TT R AW GVNA LP I VRW K + + FHAR S R Y+Y++ A Sbjct: 62 HFDTTKNRPLTAWVKGVNAFLPSSIKVRWAKNISESFHARHSVLEREYQYLLIKDTNNSA 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + Y LD + A +C G +DF+SFR+ +CQ+++P R + + G Sbjct: 122 IFHATAGWTYFDLDDYNLMAACKCFEGTHDFSSFRSSECQAKSPVRTINQFRCEQFGNTY 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + I+AN F+HH +RN++ +++ V + +I +LL+ KDRTLA T GLYL + Sbjct: 182 LFTIRANGFLHHQIRNMIAAVIHVAKNEDSVGFIDDLLSKKDRTLAPPTFMPNGLYLSNI 241 Query: 251 DYPDRYDLPK 260 Y D++ LP+ Sbjct: 242 KYDDKWKLPQ 251 >UniRef50_Q5FPX3 tRNA pseudouridine synthase A n=1 Tax=Gluconobacter oxydans RepID=TRUA_GLUOX Length = 275 Score = 202 bits (515), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 114/246 (46%), Positives = 148/246 (60%), Gaps = 4/246 (1%) Query: 13 ALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQ-VANEPITVFCAGRTDAGVHGTGQVVH 71 AL IEYDG+ Y GWQ+QN+ S+Q +E A S+ V N P+ AGRTDAGVH G V+H Sbjct: 24 ALRIEYDGTGYLGWQKQNDGTSIQGLIEAAASKLVRNRPVPSITAGRTDAGVHAAGMVIH 83 Query: 72 --FETTALRKDAAWTLGVNANL-PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 F A G+ +L P + V V +++ARFSAT R YRY I N R Sbjct: 84 LDFPDDAPIDARQIRDGMGYHLKPHRVVVLETAKVGPEWNARFSATWRSYRYTILNRPAR 143 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 P ++ V H PLD + M +AA LLG +DFTSFRAV CQ+R+P R + +N+ R G Sbjct: 144 PGLMENRVWHIKRPLDVDLMQQAANHLLGPHDFTSFRAVACQARSPIRTLDVLNIHRDGE 203 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 V++D KA +F+HH VRN+ G+LM +G+ P I E+L AKDR A TA EGL L+ Sbjct: 204 LVMIDTKARSFLHHQVRNMAGTLMMIGSRQWPVEKIIEILEAKDRCAAGQTAPPEGLCLM 263 Query: 249 AVDYPD 254 V YPD Sbjct: 264 DVGYPD 269 >UniRef50_UPI00016C512A tRNA pseudouridine synthase A n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C512A Length = 263 Score = 192 bits (489), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 103/252 (40%), Positives = 150/252 (59%), Gaps = 2/252 (0%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEP-ITVFCAGRTDAGVHGTGQVV 70 + L I YDG+ ++GWQ Q R+VQE +EKA++++ EP + + C+GRTD+GVH GQV Sbjct: 4 LKLIIRYDGTDFFGWQTQPGRRTVQETVEKAIAEITREPRVRLNCSGRTDSGVHAVGQVA 63 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 + T + A +NA LP D+ VR V P F A A + YRY++ + RL+ Sbjct: 64 NVYTASKLSCAVLLKAINAKLPEDVGVREVTEAPQSFCANKDAVRKMYRYVVQDGRLQDP 123 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 L K + L+AE M RA++CL+G +DF F T R + H++V R G + Sbjct: 124 FLRKYAWFVRQHLNAEAMARASRCLVGRHDFRCFETEWPNRLTSVRTITHLSVNRFGECI 183 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 +D++AN F+++MVR I GSL++VG PE+ IA++L A DR LA TA EGL+L+ V Sbjct: 184 WIDVEANGFLYNMVRAIAGSLVQVGRGFWPETQIADVLHAMDRRLAGPTAPPEGLFLMRV 243 Query: 251 DYPDR-YDLPKP 261 YP+ D P P Sbjct: 244 TYPESGADRPAP 255 >UniRef50_Q0F2X2 Pseudouridylate synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2X2_9PROT Length = 267 Score = 190 bits (483), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 106/251 (42%), Positives = 151/251 (60%), Gaps = 7/251 (2%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +IAL +E+DG ++GWQ+Q SVQ L+ AL V EP+TV AGRTDAGVH +V Sbjct: 11 RIALALEFDGRPFHGWQQQENATSVQACLQDALQAVEGEPLTVVAAGRTDAGVHAEALLV 70 Query: 71 HFETTALR---KDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 H + +A R A+ G N++LP +I V V+ V DFHARF+ R YRY I+N Sbjct: 71 HADVSAARWQRSPRAYLHGCNSHLPDEIRVVGVRAVAADFHARFACRGRSYRYQIWNRNT 130 Query: 128 RPAVLSKGVTHFYEP--LDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR 185 A+ + H++ P L+ E M AA LG +DF++ RA CQ+ +++ + + + Sbjct: 131 ASAL--QRWRHWWMPRSLNIEAMQGAAVHCLGRHDFSALRAAGCQAAHAEKHIRSLEIVQ 188 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 HG + + + A+AF++HMVRN+VG+L+EVGA + A LLA++DR L AATA A GL Sbjct: 189 HGHCIHIHVSADAFLYHMVRNLVGNLVEVGAGKRSPDDFAALLASRDRQLGAATAPAHGL 248 Query: 246 YLVAVDYPDRY 256 Y Y D Y Sbjct: 249 YFTDAWYDDFY 259 >UniRef50_Q3A3B5 tRNA pseudouridine synthase A n=6 Tax=Desulfuromonadales RepID=TRUA_PELCD Length = 252 Score = 189 bits (481), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 102/241 (42%), Positives = 144/241 (59%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 + L IEYDG+ Y GWQRQ SVQ+ +E+AL++V P ++ +GRTDAGVH G V H Sbjct: 4 VRLIIEYDGTPYVGWQRQPNGLSVQQVVEEALAKVCGGPHSLVSSGRTDAGVHARGMVAH 63 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 F T AA+ GVN LP IAVR +PDDFHAR+SA + YRY IY +R + Sbjct: 64 FVTPQPLPMAAYREGVNRFLPAQIAVRDAALMPDDFHARYSAVGKWYRYSIYRSPVRSPL 123 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVV 191 + H LD + M +AA+ L+G +DF +FRA C +RT R V +++ +V Sbjct: 124 ACRFSWHVRTVLDLQAMRQAARLLVGRHDFAAFRASGCAARTTVREVFSVDIVDAEEWVY 183 Query: 192 VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVD 251 VD++ + F+ +MVR +VG+L+EVG +P + +LA R + TA A+GL L+ V Sbjct: 184 VDVRGSGFLRNMVRIMVGTLVEVGRGARPPEEVGAMLAGGCRKQSGITAPAQGLCLMEVA 243 Query: 252 Y 252 Y Sbjct: 244 Y 244 >UniRef50_Q1K346 Pseudouridylate synthase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K346_DESAC Length = 251 Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 100/248 (40%), Positives = 144/248 (58%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++ L +EYDG+ Y GWQ Q ++VQE++E AL+QV + V+ +GRTDAGVH Sbjct: 3 RLCLTVEYDGTSYGGWQVQPNAQTVQEQIESALAQVIGASVRVYSSGRTDAGVHAIDMKA 62 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+ L +A+ GVN LP DI VR V V DDFHARF A + YRY +Y R+R Sbjct: 63 HFDVETLLPLSAYREGVNRFLPQDIVVRQVCRVADDFHARFDAQGKWYRYRLYRGRIRSP 122 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + H LD E M +AA L+G +DF +F+A C + T R + + + G + Sbjct: 123 LHRLTSWHVAGGLDVEAMTQAADALVGTHDFAAFQASGCAAATTQRTLFEVLLIDEGDEL 182 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 ++D++ + F+ +MVR IVGSL+EVG +AE+LA+ R A TA A+GL L+ V Sbjct: 183 IIDVRGSGFLKNMVRIIVGSLVEVGRAKLTAGQLAEILASGQRCRAGLTAPAQGLCLMQV 242 Query: 251 DYPDRYDL 258 Y ++ Sbjct: 243 WYEKNIEI 250 >UniRef50_B6BU98 Pseudouridylate synthase n=1 Tax=beta proteobacterium KB13 RepID=B6BU98_9PROT Length = 258 Score = 186 bits (472), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 83/248 (33%), Positives = 150/248 (60%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +IA +EY G+ Y G+Q Q + ++Q ++KALS++AN + + +GRTDAGVH GQV Sbjct: 2 RIAAIVEYLGTNYAGFQIQPNLNTIQLCIQKALSKIANHDVKIEASGRTDAGVHALGQVF 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+T + R +W G N+ LP DI+++WV V +FHARF+ R Y+Y+++ + A Sbjct: 62 HFDTESQRPLNSWKRGANSFLPQDISIKWVSEVDKNFHARFNVMEREYQYLLHCNDTPSA 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + + H+ ++ + + + + +G++DFTSFR+ +CQS+ P R + ++ + ++ Sbjct: 122 IWHQKAGHYGYEINFKLLDKVLKEFIGKHDFTSFRSSECQSKKPIRIMHDVSYQKKENFI 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + A+ F+HH +RN++ +++V + +P ++ L KDRT A+ T GLYL + Sbjct: 182 LFKFTADGFLHHQIRNMMSVILDVVSGKKPLDYVQYLFEVKDRTKASNTFSPNGLYLANI 241 Query: 251 DYPDRYDL 258 Y ++ + Sbjct: 242 KYEKKFKI 249 >UniRef50_C0X1G0 Pseudouridylate synthase n=36 Tax=Enterococcus RepID=C0X1G0_ENTFA Length = 277 Score = 186 bits (472), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 99/246 (40%), Positives = 144/246 (58%), Gaps = 1/246 (0%) Query: 8 PVYKIALGIEYDGSKYYGWQR-QNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGT 66 P+ I L IEYDG +Y GWQR N +++Q K+E L+Q+ EPI + +GRTDAG H Sbjct: 31 PMRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHAR 90 Query: 67 GQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 GQV +F+TT+ +N LPGDI V+ V +P+ FHAR++AT ++Y Y ++N Sbjct: 91 GQVANFKTTSSLTTTEMLSFLNRYLPGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSP 150 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 + A HF + LD E+M +A Q L+G +DF F A++ ++ R + I + R Sbjct: 151 IPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIERD 210 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G + N F+H MVR +VG+L+E+GA + + I EL A K R A TA A+GL+ Sbjct: 211 GEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGLF 270 Query: 247 LVAVDY 252 L V Y Sbjct: 271 LDEVYY 276 >UniRef50_Q0AUL4 tRNA pseudouridine synthase A n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=TRUA_SYNWW Length = 249 Score = 186 bits (471), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 96/244 (39%), Positives = 142/244 (58%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +I L +EYDGS Y+G+Q Q +VQ +LEKA+ +++ E T+ CAGRTDAGVH GQVV Sbjct: 3 RIKLLLEYDGSNYHGFQLQKNANTVQAELEKAIYRLSGERATIVCAGRTDAGVHAWGQVV 62 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 F++ + W +N+ LP DI V + +F+ RF A + Y Y+IY + + Sbjct: 63 AFDSCSTIPGDRWAYALNSQLPEDIQVLESQETRAEFNPRFDALKKCYGYLIYRQKKKAT 122 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 EPL E M AA+ L G +F SF A +RT R + H ++ GP + Sbjct: 123 FYRHYALCNTEPLKLEAMQEAAEILKGRQNFRSFCASGSSARTFEREIFHCRLSEKGPCL 182 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 ++ I A+ F+++MVR I G+L+EVG P + E++A++DRT A TA +GLYL+ V Sbjct: 183 LLHIAADGFLYNMVRIITGTLLEVGKGKYPPQHLREIIASQDRTRAGPTAPPQGLYLLQV 242 Query: 251 DYPD 254 YP+ Sbjct: 243 FYPE 246 >UniRef50_A6TWE8 Pseudouridylate synthase n=8 Tax=Clostridiales RepID=A6TWE8_ALKMQ Length = 255 Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 96/242 (39%), Positives = 137/242 (56%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 I + IEYDG+ Y GWQ Q S+QE++ KAL +V E IT +GRTDAGVH GQV Sbjct: 4 IMIEIEYDGTNYSGWQIQQNAPSIQEEIAKALKKVTGEEITTHGSGRTDAGVHAQGQVAS 63 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 F+ + + +N LP DI + K +P+DFHAR+SA +RY Y I N+ A+ Sbjct: 64 FQLHSKIPAERISFALNGKLPRDITILEAKEMPEDFHARYSAIGKRYGYCIMNNTHGSAL 123 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVV 191 L H LD ++M +A++ LLG +DF F A Q ++ R + IN G + Sbjct: 124 LRNYCYHVPYKLDLQKMKQASETLLGTHDFKGFMASGSQVKSTVRRIDEINFDTQGSQIW 183 Query: 192 VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVD 251 + ++ N F++ MVR IVGSL+ +G E + +L ++R +A TA A+GLYL V Sbjct: 184 ITMQGNGFLYKMVRIIVGSLVGIGTGKIKEEALQNILETQNRRVAVKTAPAQGLYLQKVF 243 Query: 252 YP 253 YP Sbjct: 244 YP 245 >UniRef50_B8I814 tRNA pseudouridine synthase A n=19 Tax=Clostridia RepID=TRUA_CLOCE Length = 245 Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 96/243 (39%), Positives = 142/243 (58%), Gaps = 1/243 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 KI L IEYDG+ Y+GWQ Q ++VQE ++KALS++ E + V RTD GVH GQV Sbjct: 3 KIRLTIEYDGTNYHGWQIQKNAKTVQEVIQKALSKLLGEDVGVTGCSRTDVGVHAYGQVA 62 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF T + ++ +N LP DI ++ + VP++FHAR+SA ++YRY+IYN A Sbjct: 63 HFLTDSKIPGDKFSYAINNLLPDDIVIKNSEEVPEEFHARYSAKGKKYRYLIYNSPHASA 122 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV-TRHGPY 189 ++ H L+ M +AA GE+DF +F+A Q R+ R + + V + Sbjct: 123 IMRNRSCHVRPELNVAEMQKAAGYFKGEHDFLAFQATGGQVRSTVREIYGMEVYVKEDNM 182 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 + +++ N F+++MVR I G+L+ VG ES I ++A DRT A TA A+GLYLV Sbjct: 183 ISIEVSGNGFLYNMVRIIAGTLIYVGMGKLHESEIPGIIAGLDRTKAGKTAPAQGLYLVQ 242 Query: 250 VDY 252 + Y Sbjct: 243 IYY 245 >UniRef50_B0KCN3 tRNA pseudouridine synthase A n=9 Tax=Clostridia RepID=TRUA_THEP3 Length = 244 Score = 183 bits (464), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 91/241 (37%), Positives = 140/241 (58%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 + + +EYDG+ Y+GWQ Q +VQE L+KA+ +V E + + A RTD GVH QV + Sbjct: 4 VMIVVEYDGTNYHGWQYQKNAVTVQEVLQKAIKKVTGEEVNLIGASRTDTGVHALYQVAN 63 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 F+T +N+ LP DI V K V D FHAR+SA +RY+YII N + + Sbjct: 64 FKTNTKIPAEKLPYALNSVLPDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRKFQMPT 123 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVV 191 + H PL+ E M +AA L+G +DF++F+A + R V + + ++ ++ Sbjct: 124 MRNYCWHISYPLNIEEMKKAASYLIGTHDFSAFKASGSSKTSTIRTVYDLTIEKNEDFIN 183 Query: 192 VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVD 251 ++I+AN F+++MVR IVG+L VG E + ++L +KDRT A TA +GLYL+ + Sbjct: 184 IEIEANGFLYNMVRIIVGTLSYVGLGKIKEDEVYDILKSKDRTKAGITAPPQGLYLIKII 243 Query: 252 Y 252 Y Sbjct: 244 Y 244 >UniRef50_UPI0001698EEB tRNA pseudouridine synthase A n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698EEB Length = 201 Score = 182 bits (463), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 88/147 (59%), Positives = 103/147 (70%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 KIALG+EYDGS + GWQ+Q+ RSVQE LE ALS+VA++P+ V CAGRTD GVHGTGQVV Sbjct: 20 KIALGVEYDGSGFNGWQKQSHARSVQEDLEAALSRVADQPVRVHCAGRTDTGVHGTGQVV 79 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HFETTA R AW LG N NLP D++V W + V DDFHARFSAT R YRY+I N R A Sbjct: 80 HFETTAERPPRAWVLGSNVNLPNDVSVSWARQVADDFHARFSATGRHYRYLILNRGTRSA 139 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLG 157 + T + PLD RM A + G Sbjct: 140 LWRNRATWHHHPLDEHRMQPAGTGIGG 166 >UniRef50_D0LWH9 Pseudouridylate synthase n=2 Tax=Deltaproteobacteria RepID=D0LWH9_HALO1 Length = 264 Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 100/243 (41%), Positives = 137/243 (56%), Gaps = 1/243 (0%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 I L +EYDG+ GWQRQN +VQ +E ALS + + + A RTDAGVH GQV H Sbjct: 7 IRLVLEYDGTGLSGWQRQNNAPTVQAHVEDALSSMLGRAVQIVGASRTDAGVHALGQVAH 66 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 F T + + G+N LP IAV V DFHARF + + YRY ++ R + Sbjct: 67 FRTGSSIPPHGFLRGLNGKLPPAIAVVACAEVRADFHARFDSRGKHYRYALHTRAARAPL 126 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVV 191 L + H PLD M RAAQ +LGE DF +FRA C ++T R V + ++R ++ Sbjct: 127 LRERAWHCPRPLDLAAMERAAQAMLGERDFQAFRASGCTAKTSRRRVDRVALSRPAADLI 186 Query: 192 -VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 +D+ NAF+ +MVR + G+L++VG I+ +L ++DRT A TA A GL LV V Sbjct: 187 HIDVYGNAFLRNMVRIMAGTLVDVGLGRLAADEISSILDSRDRTCAGRTAPAHGLTLVEV 246 Query: 251 DYP 253 YP Sbjct: 247 FYP 249 >UniRef50_D2RNY1 tRNA pseudouridine synthase A n=2 Tax=Acidaminococcus RepID=D2RNY1_ACIFE Length = 245 Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 101/244 (41%), Positives = 137/244 (56%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I + YDG++Y G+QRQ VQ+ LEKAL++V EPI + AGRTDAGVH GQ Sbjct: 2 IRTIKATVAYDGTRYQGFQRQKNGVGVQQVLEKALTEVLKEPILIKAAGRTDAGVHALGQ 61 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V+ F T++ + + +LP DIA+R + V DDFHARF A + Y+Y IY L Sbjct: 62 VISFATSSRIPPENYRRALEPHLPPDIAIREAEVVRDDFHARFDAVDKTYQYKIYYSPLP 121 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 E LD E M+RAA LLG++DFTSF+ Q +P R + + + G Sbjct: 122 DPTQRNTTWEIREKLDVEAMNRAAALLLGKHDFTSFKNQGSQDTSPVRTLTEAHWVQDGN 181 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 I + F++ MVRNIVG L+ VG E A ++AAK+R A A A+GLYL+ Sbjct: 182 LYTFTITGDGFLYRMVRNIVGCLVRVGTGQWNEEDFARVMAAKNRKQAGMAAPAQGLYLM 241 Query: 249 AVDY 252 V Y Sbjct: 242 HVSY 245 >UniRef50_Q2LUS6 Pseudouridylate synthase n=5 Tax=Bacteria RepID=Q2LUS6_SYNAS Length = 259 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 92/242 (38%), Positives = 144/242 (59%), Gaps = 1/242 (0%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 I L +EYDG+ Y GWQRQ + ++Q+ LE++++++ EP+ + +GRTDAGVH QV + Sbjct: 18 IKLVLEYDGTAYRGWQRQGNLPTIQKILEESIARITQEPVILHGSGRTDAGVHALNQVAN 77 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 F T++ A G+N+ LPGDI +R + V ++FH+R+SA ++ Y Y I N +R + Sbjct: 78 FRTSSRIPAANLLRGLNSLLPGDIVIRETEDVDEEFHSRYSAKSKSYLYRILNSPVRSPL 137 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVV 191 LD E+M A L G++DFTSF A ++ R ++ + R V+ Sbjct: 138 QRNSAWFIRCCLDLEKMAGAISLLCGKHDFTSFCAAGSDVKSCVRTIIRAEIERETEQVI 197 Query: 192 -VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + ++A+ F+ HMVRNIVG+L+E+GA + ++L AKDR A TA +GL+L V Sbjct: 198 TISVEADGFLRHMVRNIVGTLVEIGAGQDSSEIMRDILEAKDRGCAGITAPPQGLFLQKV 257 Query: 251 DY 252 Y Sbjct: 258 SY 259 >UniRef50_Q5HBA4 tRNA pseudouridine synthase A n=13 Tax=Rickettsiales RepID=TRUA_EHRRW Length = 246 Score = 180 bits (457), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 104/246 (42%), Positives = 147/246 (59%), Gaps = 6/246 (2%) Query: 10 YKIALGIEYDGSKYYGWQRQN-EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 YKI IEYDGS + GWQ+QN S+QE LEKA+ + + + + V+ AGRTDAGVH GQ Sbjct: 3 YKIV--IEYDGSDFIGWQKQNHNSNSIQEILEKAIFKFSKQHVIVYGAGRTDAGVHALGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGD-IAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 V HF+ T + +N +L IAV V+ DFHARFSA R Y Y I N R Sbjct: 61 VAHFDLTTDFETYIVRNAINYHLISHAIAVVHVEKTDTDFHARFSAKRRYYLYKIVN-RY 119 Query: 128 RPAVLSKGVTHF-YEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 P + + + PL+ E M +A + G ++F+SFRA CQS++P + V ++++T + Sbjct: 120 SPLTIDRNRAWLVHTPLNVENMIKAVCYIKGNHNFSSFRAKCCQSKSPIKTVDNLSITYN 179 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 PY+ ++I A +F+HH VR IVG+L+E G P I ++ A +R+ A TA + GLY Sbjct: 180 HPYIDINISAISFLHHQVRIIVGTLVECGKGYFPPEHIKTIMEANNRSYAGTTAPSYGLY 239 Query: 247 LVAVDY 252 V VDY Sbjct: 240 FVKVDY 245 >UniRef50_A4XKB7 tRNA pseudouridine synthase A n=11 Tax=Clostridia RepID=TRUA_CALS8 Length = 244 Score = 179 bits (455), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 89/241 (36%), Positives = 140/241 (58%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 I L IEYDG+ Y+GWQ+Q ++VQ +E A+ ++ E + + +GRTD GVH GQ + Sbjct: 4 ILLTIEYDGTNYFGWQKQPNKKTVQGVIEDAIKKITGEDVNLVGSGRTDRGVHALGQKAN 63 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 F+T + + L +N+ LP DI+++ V DF AR+SA + Y+Y+IYNH+ RPA+ Sbjct: 64 FKTESKIPTEKFPLALNSVLPNDISIKDAAEVSLDFSARYSAKQKTYKYLIYNHKFRPAI 123 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVV 191 L V HF LD M ++ + +GE DF+SF + ++ + R + +T + Sbjct: 124 LCNYVYHFPYELDLVSMQKSCEYFIGEYDFSSFCSSGSETNSKVRRIFDCYLTFENDCIA 183 Query: 192 VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVD 251 + I AN F+++M R I G++++VG + I ++ +KDRT A T GLYLV V Sbjct: 184 IYITANGFLYNMARIIAGTILDVGVGRFKPTDIPLIIESKDRTKAGKTLPPWGLYLVDVV 243 Query: 252 Y 252 Y Sbjct: 244 Y 244 >UniRef50_A3ZQX0 Pseudouridylate synthase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQX0_9PLAN Length = 260 Score = 179 bits (455), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 98/251 (39%), Positives = 144/251 (57%), Gaps = 4/251 (1%) Query: 8 PVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 P + L + YDG+ Y GWQ QN+ R++Q LE+ L ++ E I V +GRTD+GVH G Sbjct: 5 PERALQLIVSYDGTNYAGWQIQNDQRTIQGALERTLLKITGEKIRVTGSGRTDSGVHAIG 64 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QVV F + +NA LP DI V+ + +F+A A +RYRY++ R+ Sbjct: 65 QVVSFRMQSQLSPDVMRRALNAELPPDIVVQSARNAIPEFNAIDCAIKKRYRYLLQEGRI 124 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + + L+ M AAQ L+GE+DF SF +V + T R+V + V R Sbjct: 125 DDVFSRQYAWFVKKELNFAAMQAAAQHLIGEHDFASFESVGSERMTTVRHVFDVQVLRSE 184 Query: 188 PY----VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 + V ++++AN F+++MVR IVG+L++VG +P W+AE+LAAK RT TA A Sbjct: 185 RHEFDKVAIEVEANGFLYNMVRIIVGTLVDVGKGRRPPEWVAEVLAAKKRTAGGMTAPAH 244 Query: 244 GLYLVAVDYPD 254 GLYL+ VDYP+ Sbjct: 245 GLYLLRVDYPE 255 >UniRef50_B9KIN8 tRNA pseudouridine synthase A n=5 Tax=Anaplasmataceae RepID=TRUA_ANAMF Length = 247 Score = 179 bits (454), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 100/241 (41%), Positives = 141/241 (58%), Gaps = 4/241 (1%) Query: 16 IEYDGSKYYGWQRQNEV--RSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFE 73 +EYDG+ + GWQRQ V RSVQE +E A+ +++ + +TVF AGRTDAGVH GQVVHF+ Sbjct: 7 VEYDGTAFIGWQRQKGVAGRSVQESIEDAIYRLSQQHVTVFAAGRTDAGVHALGQVVHFD 66 Query: 74 TTALRKDAAWTLGVNANLPGD-IAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVL 132 +D +N L D +++ ++ + FHARFSA R Y Y I N P + Sbjct: 67 LNTSLQDYVIKNALNHYLRSDMVSILSLEEAAEGFHARFSAKKRHYMYKIVNRDAPPCLD 126 Query: 133 SKGVTHFYEPLDAERMHRAAQCLLGEN-DFTSFRAVQCQSRTPWRNVMHINVTRHGPYVV 191 + H + L+ M AA ++GE DF SFRA +CQS++ R V I+ R G + Sbjct: 127 RLRMWHVPKQLNVSDMQEAASHMVGEKKDFASFRAKECQSKSSVRTVDRIDCVREGNNIF 186 Query: 192 VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVD 251 V + A +F+H VR IVG+L++ G P S++ E+L K+R A TA GLYLV V+ Sbjct: 187 VHVSAKSFLHKQVRIIVGTLVQCGHGAFPPSYVLEILERKNRAAAGITAPPHGLYLVLVE 246 Query: 252 Y 252 Y Sbjct: 247 Y 247 >UniRef50_B0TC90 Pseudouridylate synthase n=3 Tax=Clostridiales RepID=B0TC90_HELMI Length = 259 Score = 174 bits (442), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 99/253 (39%), Positives = 148/253 (58%), Gaps = 6/253 (2%) Query: 11 KIALGIEYDGSKYYGWQRQNE--VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 ++ L + YDG+ Y+G+Q Q + ++Q+ L +A+ + E + V CAGRTDAGVH GQ Sbjct: 5 RLKLTVAYDGTCYHGFQTQENPALPTIQDALVRAIKVLTGEEVKVNCAGRTDAGVHARGQ 64 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 VV F T++ D + +NA LP D+AV KTVP FH+RF A + YRY IYNHR+ Sbjct: 65 VVDFVTSSPIPDDRFPFAMNAILPPDVAVVAAKTVPLAFHSRFGALGKHYRYTIYNHRI- 123 Query: 129 PAVLSKGVTH-FYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 P+ + +H + PL E M AAQC +G +DF F A + R V ++TR Sbjct: 124 PSPFHRRYSHQVFPPLQFEAMAAAAQCFVGTHDFRGFCATGSPVKDFVRTVYRCDLTRQE 183 Query: 188 PY-VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 + +V+D+ N F+++M+R I G+L++VG I ++A++DRT A TA +GL Sbjct: 184 EHRLVLDVMGNGFLYNMIRIIAGTLIDVGKGKIALEEIPAIIASRDRTRAGMTAPPQGLC 243 Query: 247 LVAVDYPDRYDLP 259 L+ V + D D P Sbjct: 244 LMKV-WHDPLDFP 255 >UniRef50_A0LIV1 Pseudouridylate synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LIV1_SYNFM Length = 261 Score = 174 bits (442), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 97/256 (37%), Positives = 142/256 (55%), Gaps = 3/256 (1%) Query: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60 M+ P L +EYDGS Y+GWQRQ V ++QE LE L + P+ V +GRTD Sbjct: 1 MNQYDLPERKNFKLILEYDGSHYHGWQRQLGVLTIQEVLESRLEVMLQSPVGVRASGRTD 60 Query: 61 AGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRY 120 AGVH GQVV+F + G+N+ LP DI V + + FHARFSAT + Y Y Sbjct: 61 AGVHACGQVVNFHVHTRLRPEEILRGINSLLPPDIVVLHAEVAAESFHARFSATGKTYEY 120 Query: 121 IIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMH 180 I N +R A+ + H +PL+ +RM LLG +DF +F A + ++ R + Sbjct: 121 HILNRPIRSALQRRYAWHVPQPLEPQRMRECLGSLLGRHDFAAFMASGSKVKSTERTIRR 180 Query: 181 --INVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAA 238 ++ +G +V +AN F+ HMVRN+VG+++EVG + ++L+++DR A Sbjct: 181 ADLDCLENGEMRLV-FEANGFLRHMVRNLVGTIVEVGRGVRAPEEFLDILSSRDRKRAGM 239 Query: 239 TAKAEGLYLVAVDYPD 254 TA A GL+L AV Y + Sbjct: 240 TAPAHGLFLTAVHYTE 255 >UniRef50_A8GUM4 tRNA pseudouridine synthase A n=19 Tax=Alphaproteobacteria RepID=TRUA_RICB8 Length = 245 Score = 174 bits (441), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 96/246 (39%), Positives = 145/246 (58%), Gaps = 3/246 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 +Y+ + +EY G+ GWQRQ+ V SVQ+ LE+A+ + + E +T+F +GRTDAGVH GQ Sbjct: 1 MYRYKISVEYLGTNLAGWQRQSGVMSVQQILEEAIYKFSGEQVTLFGSGRTDAGVHAIGQ 60 Query: 69 VVHFETTALRKDAAWTLGVN-ANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 + HF+ + + +N P + V + V ++FHARFSA AR Y Y I N R Sbjct: 61 IAHFDLSKYFEPYKIIRAINYFTRPYIVGVCNCELVDNNFHARFSAIARHYVYRILN-RP 119 Query: 128 RPAVLS-KGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 P+V+ V PLD M +++ LLG+++FTSFRA CQS++P + + +++ + Sbjct: 120 YPSVIDFDRVWWISVPLDVSAMQKSSLYLLGKHNFTSFRASSCQSKSPIKTLTKLDIIKE 179 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 + + A +F+HHMVRNIVGSL+ VG + + ++L DR A TA A GLY Sbjct: 180 NEEIKLYFSAPSFLHHMVRNIVGSLVLVGKNIWQAEQMQQVLEVADRKAAGPTAPACGLY 239 Query: 247 LVAVDY 252 + DY Sbjct: 240 FIKADY 245 >UniRef50_Q8XLQ0 tRNA pseudouridine synthase A 1 n=12 Tax=Clostridium RepID=TRUA1_CLOPE Length = 248 Score = 174 bits (441), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 142/245 (57%), Gaps = 4/245 (1%) Query: 12 IALGIEYDGSKYYGWQRQNE----VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 I + ++YDGSKY GWQ+QN+ V +VQ+KLEK L+++ +E I + GRTD+GVH Sbjct: 4 IKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVHAKN 63 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 V +F+T +L +N LP DI V ++ + FHARF+ ++ Y Y I N++ Sbjct: 64 YVANFKTNSLMTLEQIIEYINEYLPEDIRVTEIREASERFHARFNVKSKTYEYTIDNNKF 123 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + L K H E LD E M A+ LLG +DF SF +++ ++++ R + I + Sbjct: 124 KDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTLRTINSIEFHENN 183 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + + I N F+ +MVR +VG+L++VG +I ++L AK+R A+ A A GL L Sbjct: 184 NILSIKINGNGFLLNMVRIMVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPAHGLCL 243 Query: 248 VAVDY 252 + ++Y Sbjct: 244 LELNY 248 >UniRef50_Q2RNZ9 tRNA pseudouridine synthase A n=113 Tax=Alphaproteobacteria RepID=TRUA_RHORT Length = 278 Score = 174 bits (440), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 105/255 (41%), Positives = 143/255 (56%), Gaps = 4/255 (1%) Query: 14 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFE 73 L +EYDG Y GWQRQ+ ++Q+ LE+A ++ V +GRTD+GVH GQV H + Sbjct: 6 LTVEYDGRGYCGWQRQDNGPTIQQSLEEAAFRLCGVATRVHGSGRTDSGVHALGQVAHLD 65 Query: 74 TTALRKDAAWTLGVNANL-PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVL 132 A +NA+L P IAV V +DFHARFSA R YRY I N R+ P L Sbjct: 66 LPRAYGAATVMKALNAHLRPQPIAVIDAAEVAEDFHARFSAEERSYRYRILN-RIAPPTL 124 Query: 133 SKG-VTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVV 191 +G V P++A M AAQ L+G +DF+SFRA +CQ+ +P + + + VTR G + Sbjct: 125 DQGRVWWVARPMEAAIMDEAAQVLVGRHDFSSFRAAECQADSPVKTLSELRVTRVGDEIH 184 Query: 192 VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVD 251 V +A +F+HH VRN+VG+L VG + L A DR+ A TA +GLY + V Sbjct: 185 VFARARSFLHHQVRNMVGTLALVGDGRWTADRLRAALEACDRSAAGPTAPPDGLYFLRVR 244 Query: 252 YPDRYDLPKPPMGPL 266 +P P GPL Sbjct: 245 FPGETAAPA-KAGPL 258 >UniRef50_A8R9F5 Pseudouridylate synthase n=2 Tax=unclassified Erysipelotrichaceae RepID=A8R9F5_9FIRM Length = 252 Score = 173 bits (439), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 95/256 (37%), Positives = 136/256 (53%), Gaps = 8/256 (3%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 YK+ + YDG+ Y GWQ+Q+ RS+QE++E AL+++ E + + +GRTDA VH QV Sbjct: 4 YKVTVC--YDGTNYAGWQKQDNARSIQEEIECALAKINEEAVEIVASGRTDAHVHALAQV 61 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 HF+ D W N+ LP DI + V+ V D FHARF A +RY Y I N L P Sbjct: 62 FHFDAKKALSDEQWVRACNSLLPKDIRILKVEKVSDSFHARFDAVRKRYDYYITNDVLNP 121 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSR-TPWRNVMHINVTRHGP 188 L + + LD M A +G +DFTSF + + R + + + + V + Sbjct: 122 -FLENYMGKDRKSLDVAYMQECANVFIGTHDFTSFTSSKIDERKSRIKTIYRLEVQQEAN 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 V + + NAF+ +MVR + L+E G H + I+++L AKD+ A A GLYLV Sbjct: 181 AVHIIFEGNAFLRYMVRMLAQVLIEAGKHRLTKEAISQMLEAKDKHACRYKASANGLYLV 240 Query: 249 AVDYPDRYDLPKPPMG 264 VDY D PMG Sbjct: 241 RVDYQD----NSSPMG 252 >UniRef50_D2R418 tRNA pseudouridine synthase A n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R418_9PLAN Length = 285 Score = 173 bits (438), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 96/243 (39%), Positives = 139/243 (57%), Gaps = 4/243 (1%) Query: 14 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFE 73 L + YDG+ + GWQ Q R+VQ++LEKA+ + +GRTDAGVH GQV F Sbjct: 6 LTLAYDGTNFGGWQWQPNRRTVQDELEKAVETITGVRSRFVASGRTDAGVHALGQVAAFS 65 Query: 74 TTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 + A G+NA +P DI + V VP FH A +RYRY++ + LR Sbjct: 66 SETGIDPAGLLKGLNAKVPDDIFIFDVVEVPLAFHPIRDAVRKRYRYVVQDGPLRDIFDR 125 Query: 134 KGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR----HGPY 189 + H +PLD + M A++ LLGE+DF SF+ T RNV+ I+V R Sbjct: 126 QYAWHVRQPLDEQAMLEASRLLLGEHDFASFQTSGSSRLTTERNVLDISVERVDGARTSR 185 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 V V+++A+ F+ +MVRNIVG+L+EVG +P +W E+L ++DR A TA A+GL+++ Sbjct: 186 VHVEVEADGFLFNMVRNIVGTLVEVGKGTRPVAWTREVLESRDRRRAGMTAPAQGLFMIG 245 Query: 250 VDY 252 V Y Sbjct: 246 VHY 248 >UniRef50_C4Z854 Pseudouridylate synthase n=3 Tax=Clostridiales RepID=C4Z854_EUBR3 Length = 276 Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 96/245 (39%), Positives = 142/245 (57%), Gaps = 5/245 (2%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVR-SVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 YKI + YDG++Y GWQ Q ++Q KL+ LS +A +P+ V +GRTDAGVH GQ Sbjct: 30 YKII--VAYDGTRYKGWQVQKSTDDTIQGKLQHVLSTLAGKPVEVIGSGRTDAGVHAVGQ 87 Query: 69 VVHFETTA-LRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 V F KD + + +N +LP DIAV + VPD FHAR++A ++ Y Y I+ + Sbjct: 88 VASFHMPKHFSKDEIF-IWLNEHLPADIAVTDISNVPDRFHARYNAVSKTYVYTIHTGIV 146 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 K V + +PLD +RM +AA LLGE+DF +F + ++ R + I++ + G Sbjct: 147 SDVFRRKYVYDYDKPLDTDRMKKAAAYLLGEHDFKAFCGNRHMKKSTVRTIFSIDIEKTG 206 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 +V+ + F+ +M+R I G+L+EVG + + E+LA+KDR A TA A GL L Sbjct: 207 ADIVISYTGDGFLQNMIRIITGTLIEVGDGRKNPDAVMEILASKDRAQAGYTAPACGLRL 266 Query: 248 VAVDY 252 VDY Sbjct: 267 ERVDY 271 >UniRef50_B7K222 tRNA pseudouridine synthase A n=12 Tax=Cyanobacteria RepID=TRUA_CYAP8 Length = 293 Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 103/277 (37%), Positives = 149/277 (53%), Gaps = 11/277 (3%) Query: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60 M Q ++AL I+Y GS+++GWQ Q R+VQ ++E A+++V E +T+ AGRTD Sbjct: 1 MKGTQTKEKQRVALVIQYLGSRFHGWQWQPNQRTVQAEIENAIAEVLGETVTLHGAGRTD 60 Query: 61 AGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRY 120 AGVH QV HF+ + + W +NA LP DI +R VP +HARFSA RRYRY Sbjct: 61 AGVHAAAQVAHFDMVSPIPASRWVDILNARLPEDILIRGSAQVPLTWHARFSAQWRRYRY 120 Query: 121 IIYNHRLRPAVLSKGVT-HFYE-PLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNV 178 Y + RP + K + H+Y PLD M +A LLG + +F + W V Sbjct: 121 TFYTEQ-RPNLFVKPYSWHYYHFPLDESLMQQALNPLLGRHHLAAFHRAGSRRDHSWVEV 179 Query: 179 MHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAA 238 + R GP++ ++I+AN F++ MVR +VG L+EVG+ + E+ + R Sbjct: 180 QSTHCHRQGPFIHLEIQANGFLYGMVRLLVGLLVEVGSGKRSLENFTEIWRKQQREAVKY 239 Query: 239 TAKAEGLYLVAVDYPDRYDLPKPP-----MGPLFLAD 270 A A+GL L+ V Y + P PP PLFL + Sbjct: 240 AAPAKGLCLLRVGYE---EFPFPPSLWFDSQPLFLFN 273 >UniRef50_Q1Q1P7 Pseudouridylate synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1P7_9BACT Length = 244 Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 94/242 (38%), Positives = 139/242 (57%), Gaps = 2/242 (0%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 + L IEY+G+ Y GWQ Q SVQE L A+ V E + + AGRTDAGVH GQV + Sbjct: 4 VRLTIEYEGTNYAGWQWQKNAISVQETLTHAVRTVIREEVEIHGAGRTDAGVHALGQVAN 63 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 F+T + +N +LP DI ++ V + + FHAR+SAT++ YRY + N LR + Sbjct: 64 FKTYSAIPAKQLLRAINFHLPQDITIKDVADMEEGFHARYSATSKVYRYTVLNDWLRTS- 122 Query: 132 LSKGVTHFYE-PLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 L++ + Y PLD +M AAQ L+G +DFTSF ++ R + ++ + + G Y+ Sbjct: 123 LNRNFCYVYGFPLDLSKMMTAAQYLIGTHDFTSFTTKALDNKDRIRTIKNLEIQKEGKYI 182 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 ++AN F++ MVR IVG+L+E+G I +LL +R A TA A+GL + V Sbjct: 183 YFVVEANGFLYKMVRTIVGTLLEIGRGKMDVYLIRKLLETGNRDDAGPTAPAKGLCMKEV 242 Query: 251 DY 252 Y Sbjct: 243 KY 244 >UniRef50_B5EFM8 tRNA pseudouridine synthase A n=4 Tax=Bacteria RepID=TRUA_GEOBB Length = 250 Score = 171 bits (432), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 97/247 (39%), Positives = 137/247 (55%), Gaps = 1/247 (0%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 I L IEYDG+ Y GWQ Q R+VQE L++AL+ + E + +GRTDAGVH G V Sbjct: 4 IKLIIEYDGTAYCGWQVQPNGRTVQEVLQEALAAMLGEKTPLHGSGRTDAGVHARGMVAC 63 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 F+T A+ G+N LPGDIAVR VP +FH RF A A+ YRY I LR + Sbjct: 64 FKTDKAMPLRAFREGLNCLLPGDIAVREACEVPLEFHPRFDAHAKHYRYTILLDDLRSPL 123 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVV 191 V LD + M A +GE+DF +FRA C ++T R + +++ + G + Sbjct: 124 SRLTVWRLKGKLDIQAMRAACAAFVGEHDFAAFRASNCAAKTTVRRIYSMDLVQEGCLLH 183 Query: 192 VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTL-AAATAKAEGLYLVAV 250 +D+K + F+ +MVR I G+L+EVG + +A LL DR + T +GL L+ V Sbjct: 184 LDVKGSGFLKNMVRIITGTLIEVGQGKKSVEDVARLLQGGDRQQNSGMTVPPQGLCLMQV 243 Query: 251 DYPDRYD 257 Y ++ D Sbjct: 244 YYQEKCD 250 >UniRef50_A8ZTL2 Pseudouridylate synthase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZTL2_DESOH Length = 252 Score = 171 bits (432), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 97/242 (40%), Positives = 140/242 (57%), Gaps = 5/242 (2%) Query: 14 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFE 73 L IEYDG+ ++GWQ Q ++R+VQ ++ AL+ + + ++V +GRTDAGVH QV F Sbjct: 7 LIIEYDGACFHGWQIQKDLRTVQGEITGALASITGQAVSVIGSGRTDAGVHAMAQVASFI 66 Query: 74 TTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 + +N L DI + + V +FHAR+SA ++ YRY I N L PA L Sbjct: 67 CDTRLEPGTLQKALNGILAKDIVIHDCREVSLNFHARYSAKSKTYRYRILNRNL-PAALY 125 Query: 134 KGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVM--HINVTRHGPYV 190 +G H +PLD M A +LG +DF+SF + R+V N+ G Y+ Sbjct: 126 RGYAWHIKKPLDLGAMTAALPHILGRHDFSSFEGTGSPKASSVRHVTAATFNMAEDG-YL 184 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 +I A+ F+ HMVRNIVG+L+EVG + +A++LAAKDR+ A ATA GL+LV V Sbjct: 185 AFEITADGFLKHMVRNIVGTLVEVGLGKKTPEAVADILAAKDRSRAGATAPGHGLFLVRV 244 Query: 251 DY 252 +Y Sbjct: 245 NY 246 >UniRef50_B2IEW0 tRNA pseudouridine synthase A n=2 Tax=Alphaproteobacteria RepID=TRUA_BEII9 Length = 260 Score = 169 bits (429), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 101/249 (40%), Positives = 136/249 (54%), Gaps = 5/249 (2%) Query: 8 PVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 P YK L +EYDG+ + GWQRQ SVQE +E AL + P+ + AGRTDAGVH + Sbjct: 2 PRYK--LTVEYDGASFVGWQRQKNGLSVQEVIETALLAINGAPVGIRGAGRTDAGVHASA 59 Query: 68 QVVHFETTALRKDAAWTLGVNANL-PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 QV H + + +NA++ P +AV + VP+ F ARFSA R Y Y I N R Sbjct: 60 QVAHADLAREWRPDVLRDALNAHMRPALVAVVAAEPVPETFDARFSAIRRHYLYRIINRR 119 Query: 127 LRPAVLSKGVTHFYEP-LDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR 185 P G + LDA MH AAQ L G +DF++FRA +CQ+ +P R + ++V Sbjct: 120 A-PLTFEAGRAWLVKRRLDARAMHEAAQVLTGRHDFSTFRAAECQAASPIRTLERLDVQA 178 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 G + + A +F+HH VR++VGSL VG+ + L A DR A A GL Sbjct: 179 VGDLIEIRASARSFLHHQVRSMVGSLEMVGSGKWSAGDLRAALEACDRRRCGMVAPAAGL 238 Query: 246 YLVAVDYPD 254 YL VDYP+ Sbjct: 239 YLTGVDYPE 247 >UniRef50_B9M6W5 tRNA pseudouridine synthase A n=8 Tax=Deltaproteobacteria RepID=TRUA_GEOSF Length = 244 Score = 169 bits (427), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 91/242 (37%), Positives = 136/242 (56%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 I L IEYDG+ Y GWQ Q ++Q+ +E++L ++ + + + +GRTDAGVH G V Sbjct: 3 NIKLIIEYDGTAYCGWQLQPNGITIQQVIEESLEKMLGQSVRLQSSGRTDAGVHALGMVA 62 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 F+T A++ G+N LP DIA+R VP F+ R A ++ YRY IYN + R Sbjct: 63 VFKTQKDLPVRAFSDGLNCLLPPDIAIRDASEVPLSFNPRADAISKHYRYTIYNSKRRSP 122 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + H L+ E M A +GE+DF +FRA C ++T R + H++V + G V Sbjct: 123 LTRLNSWHLRGILNMELMQLGASHFVGEHDFAAFRASNCVAKTTIRRMFHVSVAKVGDSV 182 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 ++D+ + F+ +MVR I G+L+ VG S I LLA DR+ + TA +GL L+ V Sbjct: 183 IIDVHGSGFLKNMVRVIAGTLVAVGQGKLDPSAIPGLLAGGDRSASGITAPPQGLCLMEV 242 Query: 251 DY 252 Y Sbjct: 243 FY 244 >UniRef50_D0WG96 Pseudouridylate synthase n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WG96_9ACTN Length = 331 Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 106/258 (41%), Positives = 147/258 (56%), Gaps = 17/258 (6%) Query: 12 IALGIEYDGSKYYGWQRQNE--VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 +ALG+ YDG+ + G+ RQ E V +VQ +LE+ LS + + CAGRTDAGVH GQV Sbjct: 74 VALGVAYDGAPFAGFARQAESHVTTVQGELERVLSVLYRRAVDTVCAGRTDAGVHALGQV 133 Query: 70 VHFETT----ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 V F+ T A R +NA + I V + P F ARF AT+R YRY I Sbjct: 134 VSFDLTEEEFASRPLRTLMKSMNALVDERITVTCAEERPAGFSARFDATSREYRYFIATG 193 Query: 126 RLRPAVLSKGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRA------VQCQSRTPWRNV 178 RP ++++ V H PLD + M+ AA+ L+GE+DF SF ++ + R+ R V Sbjct: 194 NARPVLIARSVWHLRGAPLDVDAMNTAARFLVGEHDFKSFCVASSALHLEGEGRSTCRRV 253 Query: 179 MHINV-TRH---GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRT 234 + +V + H P V V I NAF+H M+R IVG+L+ VG + SW+A++LAA+DRT Sbjct: 254 IEADVRSTHVMGTPVVEVRIVGNAFLHSMIRIIVGTLVAVGQGRRDASWVADVLAARDRT 313 Query: 235 LAAATAKAEGLYLVAVDY 252 A TA A GL +V Y Sbjct: 314 AAGETAPACGLTFWSVRY 331 >UniRef50_B9JQX0 tRNA pseudouridine synthase A n=19 Tax=Alphaproteobacteria RepID=TRUA_AGRVS Length = 259 Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 98/251 (39%), Positives = 142/251 (56%), Gaps = 9/251 (3%) Query: 8 PVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 P YK L +EYDG+ Y GWQRQ+ SVQ LE A+ + E + + AGRTD+GVH +G Sbjct: 2 PRYK--LTVEYDGTPYVGWQRQDNGPSVQGALEAAVLGLTGETVAIRGAGRTDSGVHASG 59 Query: 68 QVVHFETTALRKDAAWTL--GVNANLPGD---IAVRWVKTVPDDFHARFSATARRYRYII 122 QV H + LR+ + L +NA+L I++ + VPD F ARFSA R Y Y I Sbjct: 60 QVAHVDL--LRQWIPYKLRNALNAHLAQAGQAISILAAEAVPDAFDARFSALKRHYLYRI 117 Query: 123 YNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHIN 182 + R A+ + +PLD E MH AAQ L+G +DFT+FR+V CQ+ +P R + ++ Sbjct: 118 MSRPSRLALEANRAWWVSKPLDHEAMHAAAQMLVGNHDFTTFRSVHCQAISPVRTLDRLD 177 Query: 183 VTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 V+R+G + + A +F+H+ +R+ G+L G + L A+DR A Sbjct: 178 VSRNGDLIEIRASAQSFLHNQIRSFAGTLKMAGEGKMTPEDVRAALEARDRKACGPVAPP 237 Query: 243 EGLYLVAVDYP 253 +GLY + VDYP Sbjct: 238 QGLYFLQVDYP 248 >UniRef50_Q7MBB9 tRNA pseudouridine synthase A n=1 Tax=Gloeobacter violaceus RepID=TRUA_GLOVI Length = 304 Score = 166 bits (421), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 94/246 (38%), Positives = 137/246 (55%), Gaps = 3/246 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++AL ++Y G ++GWQ Q R+VQ+ LE+A ++A P+ AGRTD GVH +GQVV Sbjct: 16 RLALRVQYLGGHFFGWQWQPGQRTVQQCLEEATERIARHPVRYHAAGRTDTGVHASGQVV 75 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+T W G+N+ LP DIAVR V D +HARF+A R YRY I+N + P Sbjct: 76 HFDTHKKLAPETWVRGLNSLLPDDIAVRAAAYVSDHWHARFTALWREYRYCIHNSTV-PD 134 Query: 131 VLSKGVTHFYE--PLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + + + +Y PLD+E + A L G +DF +FR +V TR G Sbjct: 135 LFVRAQSWYYPYCPLDSEAVAAALATLPGHHDFRAFRRAGSSRPHSLVHVYTAECTREGE 194 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + + ++AN+F++ M+R ++G+L EVG+ A L A +R A +GL LV Sbjct: 195 QIAIRVRANSFLYGMMRLLIGALAEVGSGRWSVERFAGLWQAGNREQVKYAAPPQGLCLV 254 Query: 249 AVDYPD 254 V YPD Sbjct: 255 GVGYPD 260 >UniRef50_D1VSK1 Pseudouridylate synthase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSK1_9FIRM Length = 243 Score = 166 bits (420), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 139/246 (56%), Gaps = 10/246 (4%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 I + + YDG+ Y+G+Q QN++++++ +L KA++ + ++ AGRTD GVH GQ V+ Sbjct: 3 ILIKVTYDGTNYHGYQVQNKLKTIEGELSKAINNTLKKETKIYSAGRTDRGVHALGQYVN 62 Query: 72 FETTALRKDAAWTLG-----VNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 F T D LG +N +LP DI+V K VP DFHARFSA + YRY++YN++ Sbjct: 63 FYT-----DTTIDLGNLPRVINFHLPDDISVISAKEVPFDFHARFSAKEKIYRYVVYNNK 117 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 R A+ + LD M+ + + L+G+ DF SF + R + I V + Sbjct: 118 YRNAIYHNRAYQYPFSLDLSLMNESFKYLIGQKDFKSFMGRDAIVKDTIRTIYSIKVKKD 177 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 ++ D + +F+ +M+R I+G+ +E+G + ++ E+L ++R A TA + GLY Sbjct: 178 NKFIYFDFQGKSFLKNMIRIIMGTAIEIGRGKKDPIFMKEVLEKQNRKYAGPTAPSCGLY 237 Query: 247 LVAVDY 252 L+ + Y Sbjct: 238 LMNILY 243 >UniRef50_C4V5N7 Pseudouridylate synthase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V5N7_9FIRM Length = 256 Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 101/246 (41%), Positives = 131/246 (53%), Gaps = 1/246 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 IAL I YDG+ Y+G+QRQ V +VQ LE AL+++ E + + AGRTDAGVH GQV Sbjct: 8 NIALTIAYDGTNYHGFQRQTPPVLAVQNVLEGALAKICGEMVELAAAGRTDAGVHAYGQV 67 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 V+F T VN LP DI V P +F AR SAT + Y Y I R+ Sbjct: 68 VNFFTDGRIPTEHLPRAVNGLLPPDIVVSQAWEAPREFSARHSATGKAYVYRIEECRVPN 127 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 ++PLD E MH L G +D++SFRA +P R + I +T Sbjct: 128 PFTRNYAWQVFQPLDHEAMHAVLLLLKGTHDYSSFRAAGGAPMSPVRTLDEIRLTEEEGR 187 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 + + + F++HMVRNIV + VG S AE+ AA+DR LA TA A GLYL+A Sbjct: 188 LSIYVHGTGFLYHMVRNIVSTAAAVGMGRISPSRFAEIFAARDRRLAPPTAPACGLYLLA 247 Query: 250 VDYPDR 255 VDY R Sbjct: 248 VDYGQR 253 >UniRef50_B0N4B2 Pseudouridylate synthase n=4 Tax=Bacteria RepID=B0N4B2_9FIRM Length = 245 Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 88/244 (36%), Positives = 136/244 (55%), Gaps = 2/244 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++ + YDGSK++G+Q QN++R+VQ +++KAL + E I + +GRTDA VHGT QV Sbjct: 3 RVKCSVSYDGSKFHGFQVQNKLRTVQGEIQKALKNICKEEIIIHGSGRTDAKVHGTKQVF 62 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+TT +A W +N LP DI + V ++FH+R+SA + Y Y++ P Sbjct: 63 HFDTTREMPEAQWKRAINHFLPNDIYILDSYFVDENFHSRYSAIKKEYHYLLSTKEYSP- 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + + + PLD E M AA+ +GE+DF SF + Q R + +++T + Sbjct: 122 FETNYIFQYGRPLDLELMREAAKIFIGEHDFASFCSYD-QYGNTIRELYELSITNEKGII 180 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + N F +MVR+IVG L++VGA + + ELL +K AK +GLYL V Sbjct: 181 KFILVGNGFRRYMVRHIVGGLIQVGAKRVTKERLQELLDSKGEQKCLFKAKPQGLYLHEV 240 Query: 251 DYPD 254 Y + Sbjct: 241 FYDE 244 >UniRef50_A7VFR5 Pseudouridylate synthase n=7 Tax=Clostridiales RepID=A7VFR5_9CLOT Length = 273 Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 90/242 (37%), Positives = 134/242 (55%), Gaps = 2/242 (0%) Query: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 I YDG++Y+GW+ + +V ++Q K+E LS +A E + + AGRTDAGVH V Sbjct: 32 IAYDGTRYHGWEHKKDVVTIQGKIESVLSLMAGEEVRINGAGRTDAGVHARAMVASGPVP 91 Query: 76 ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKG 135 + +N LP DI + V + FHARF+A + YRY IY RL+P K Sbjct: 92 TDKTPEEIRDYMNHYLPDDICILEVTPAAERFHARFNAKGKHYRYTIYRGRLKPVFDRKY 151 Query: 136 VTHF--YEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVD 193 V E +D ERM +AA L+GE+DF SF + ++ R + I++ G YV++D Sbjct: 152 VWTLDEGETIDCERMRKAAAYLVGEHDFKSFCGNKQMKKSTVRKLFAIDIKEDGDYVILD 211 Query: 194 IKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYP 253 F+ +MVR + G+L+EVGA +++ E+L + R LA TA +GL L+ VDY Sbjct: 212 FYGAGFLQNMVRILTGTLVEVGAGRMEPAYMEEVLTGRCRQLAGPTAPPQGLCLMQVDYE 271 Query: 254 DR 255 + Sbjct: 272 KK 273 >UniRef50_A7VWN0 Pseudouridylate synthase n=2 Tax=Clostridium RepID=A7VWN0_9CLOT Length = 251 Score = 164 bits (414), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 91/244 (37%), Positives = 136/244 (55%), Gaps = 1/244 (0%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 + L I YDG Y+GWQ Q SVQE + AL QV + V RTD+GVH + Sbjct: 6 LLLTIAYDGRAYHGWQIQENALSVQEVFQGALRQVIGDDFDVKGCSRTDSGVHANQYCIS 65 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 +T +N LP D+AV+ ++V DFHAR+S + Y+Y+I+N +R Sbjct: 66 LKTGHRIPCERLVAALNRFLPMDMAVKGCRSVSLDFHARYSCKGKEYQYLIWNDPVRNPF 125 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPW-RNVMHINVTRHGPYV 190 L H++ PLD + +++AAQ +G++DFTSF + + R R V +V+R G V Sbjct: 126 LDGRAFHYWYPLDTDMLNQAAQAFVGKHDFTSFCTLDHRERDNMERMVKCCSVSREGSLV 185 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 ++A+ F+++MVR +VG+L+ + PE I +L AKDR+ A TA+A GLYL V Sbjct: 186 TFRVEADGFLYNMVRIMVGTLLRIAQGKIPEDGIPAILEAKDRSKAGPTARACGLYLNRV 245 Query: 251 DYPD 254 Y + Sbjct: 246 FYEE 249 >UniRef50_C1SLX8 Pseudouridylate synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SLX8_9BACT Length = 245 Score = 164 bits (414), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 90/244 (36%), Positives = 137/244 (56%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 +Y L +EY G+ + GWQ Q R+VQE+L KALS++ +TV +GRTD+GVH GQ Sbjct: 2 LYNKKLIVEYVGTDFAGWQVQPNGRTVQEELHKALSKMYKTKVTVIGSGRTDSGVHALGQ 61 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V +F T +G+N+ LP DI++ V+ VP+DFHA+ +A ++ Y Y I+ R+R Sbjct: 62 VANFRTERYIPPENVHMGLNSMLPEDISISSVEDVPEDFHAQLNAVSKTYLYRIFPSRVR 121 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 A+L+ + L+ +RM + GE+DFTSF R + +I R Sbjct: 122 SAMLAGRTWWVKDELNYKRMCELLKYFEGEHDFTSFCVQTSLRENNVRRINNIRCYREDK 181 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + ++I N F+H+MVR I G+++E + +I E + +DR+ A TA A GLYL Sbjct: 182 VICIEINGNGFLHNMVRIIAGTVVEALRKGYGDEYIKEAIEGRDRSKAGPTAHAAGLYLK 241 Query: 249 AVDY 252 V Y Sbjct: 242 KVYY 245 >UniRef50_A5CET3 tRNA pseudouridine synthase A n=2 Tax=Orientia tsutsugamushi RepID=TRUA_ORITB Length = 284 Score = 163 bits (413), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 101/278 (36%), Positives = 146/278 (52%), Gaps = 42/278 (15%) Query: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 +EYDG+ + GWQRQ S+Q+ LE +S + + + AGRTDAGVH GQVVHF+ Sbjct: 8 VEYDGTNFVGWQRQQNGLSIQQLLEDKISTFTKQTVNLIAAGRTDAGVHALGQVVHFDLI 67 Query: 76 A---------LRKDA---------------------------AWTLGVNANL---PGDIA 96 A + K+ A+ L N P I Sbjct: 68 APNNSKDLACINKETDNKEVSKQNNTTTTIDSLKKMLPCRYNAYKLMSAVNYLLKPHRII 127 Query: 97 VRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYE-PLDAERMHRAAQCL 155 + + FHARFSA AR Y+Y I N R P+V+ + T + + PL+ M A+Q L Sbjct: 128 LTSCEITTLQFHARFSAKARHYKYRIIN-RTVPSVIEQNRTWWIKPPLNVIDMIDASQHL 186 Query: 156 LGENDFTSFRAVQCQSRTPWRNVMHINV-TRHGPYVVVDIKANAFVHHMVRNIVGSLMEV 214 +G++DFTSFR+ CQ+++P + + I V T + P + + A +F+HHMVRNIVG+L+ + Sbjct: 187 IGKHDFTSFRSSACQAKSPLKTLTKIEVDTTNYPEIQIYFSAPSFLHHMVRNIVGTLVYI 246 Query: 215 GAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 G + I +L AK+R +A TA + GLY V VDY Sbjct: 247 GLCKISPAAIKTILFAKNRAMAGPTAPSSGLYFVKVDY 284 >UniRef50_C4Z2W2 Pseudouridylate synthase n=10 Tax=Firmicutes RepID=C4Z2W2_EUBE2 Length = 253 Score = 162 bits (411), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 90/248 (36%), Positives = 139/248 (56%), Gaps = 2/248 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +I L + YDG++Y GWQ Q E +++ L+KA+ ++ E + V A RTDAGVH G V Sbjct: 3 RIKLIVAYDGTEYSGWQIQPEAPTIEMCLDKAIRELTGENVHVTGASRTDAGVHAYGNVA 62 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 F+T + +T +N LP I ++ V DFH R T + Y Y I N + P Sbjct: 63 VFDTESTIPGDRFTFALNRFLPDSIVIQDSWEVSGDFHPRHCNTRKTYEYRILN-TVVPL 121 Query: 131 VLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 + T H +D E+M AA ++GE+DF SF V+ Q+ + R + + V + G Sbjct: 122 PQKRNFTWHVTGSIDIEKMKEAAAYIVGEHDFKSFCCVRTQAESTVRTIYSLEVLQEGSE 181 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 +++ IK N F+++MVR I G+L++VG ++ ++L AKDRT+A TA +GL LV Sbjct: 182 IIIRIKGNGFLYNMVRIITGTLIQVGKGRFKPEYVKQMLEAKDRTVAGQTAPPQGLTLVG 241 Query: 250 VDYPDRYD 257 ++Y D D Sbjct: 242 IEYVDNDD 249 >UniRef50_A9WH95 tRNA pseudouridine synthase A n=5 Tax=Chloroflexaceae RepID=TRUA_CHLAA Length = 278 Score = 162 bits (411), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 102/249 (40%), Positives = 133/249 (53%), Gaps = 10/249 (4%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 IAL + YDG+ + G Q Q ++R+VQ LE A + E + AGRTDAGVH TGQV H Sbjct: 4 IALLLAYDGTDFAGSQWQTDIRTVQGALESAWEALTQERRRIVLAGRTDAGVHATGQVAH 63 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 +TT G+NA+LP D+A++ V DFHARFSA R YRY+I Sbjct: 64 VQTTTRHNLQTIWRGLNAHLPVDLAIQNVGEAVPDFHARFSAIQREYRYLIDCAAAPLPQ 123 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY-- 189 L V H+ LD M A + L G +DF +F R+ R + TR G Y Sbjct: 124 LRHQVLHYAGTLDVAAMTAALKLLEGTHDFAAFTTATPAQRSTVRTMYW---TRVGDYEW 180 Query: 190 -----VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 + +++ ANAF+ HMVR IVG+L+ VG E+LA++DR LA TA A G Sbjct: 181 FERRLLAIEVAANAFLQHMVRMIVGTLLLVGRGRMTVDQFGEVLASRDRRLAGPTAPAHG 240 Query: 245 LYLVAVDYP 253 L L AV YP Sbjct: 241 LTLTAVRYP 249 >UniRef50_Q5WLN0 tRNA pseudouridine synthase A n=15 Tax=Bacillales RepID=TRUA_BACSK Length = 261 Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 90/243 (37%), Positives = 130/243 (53%), Gaps = 1/243 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQV-ANEPITVFCAGRTDAGVHGTGQV 69 ++A + YDG+ + G+Q Q R+VQ ++E+AL ++ + V +GRTDAGVH GQV Sbjct: 3 RMACKLSYDGTAFAGYQVQPGKRTVQSEVERALQEIHKGARVPVVASGRTDAGVHACGQV 62 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 +HF+T W +N +LP DI V V DFHAR+ A A+ YRY I Sbjct: 63 LHFDTELTIAPERWVSALNTHLPDDIVVTNAAMVEPDFHARYGAQAKEYRYYIQCGPFEN 122 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 H + LD M AA+ LLG +DF++F A R + H+ V Sbjct: 123 VFRRHFAVHIKQALDVPAMQTAAKHLLGTHDFSAFCAANTTVTDKVRTITHVAVQPSEEG 182 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 +++ I+ F+++MVR IVG+L+E+G + S + +LA K R LA TA A GL L Sbjct: 183 LLISIRGTGFLYNMVRIIVGTLLEIGTGKRVASEMKVILAGKSRNLAGKTAPAHGLCLYE 242 Query: 250 VDY 252 VDY Sbjct: 243 VDY 245 >UniRef50_A9HKQ8 Pseudouridylate synthase n=4 Tax=Alphaproteobacteria RepID=A9HKQ8_GLUDA Length = 258 Score = 162 bits (409), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 109/255 (42%), Positives = 144/255 (56%), Gaps = 5/255 (1%) Query: 7 PPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN-EPITVFCAGRTDAGVHG 65 P + + A+ IEYDG + GWQRQ SVQ+ LE+A S++A+ + AGRTDAGVH Sbjct: 4 PSLQRWAVRIEYDGRPFVGWQRQITGLSVQQVLEEAASRLASGRVVPSITAGRTDAGVHA 63 Query: 66 TGQVVH--FETTALRKDAAWTLGVNANL-PGDIAVRWVKTVPDDFHARFSATARRYRYII 122 TGQ H F D+ +N ++ P +AV V ++ ARFSA R YRY I Sbjct: 64 TGQAAHLDFPGDVRLNDSTVRDALNFHMKPYPVAVLRACPVDTEWSARFSAIRRSYRYRI 123 Query: 123 YNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHIN 182 N R RP + V LD M RAA+ LLG +DFTSFRA CQ+R+P R + + Sbjct: 124 LNRRSRPTLDDGRVWLVKRTLDEAAMARAARLLLGRHDFTSFRASACQARSPLRTLDRLG 183 Query: 183 VTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 V R G +V++ +A +F+HH VRN+VG+L VG +A LAA DR A TA Sbjct: 184 VVRQGEEIVIEAEARSFLHHQVRNMVGTLKLVGEGLWAPDRVAAALAACDRRAAGPTAPP 243 Query: 243 EGLYLVAVDY-PDRY 256 +GLYL V Y PD + Sbjct: 244 DGLYLTGVGYDPDPF 258 >UniRef50_Q11XU3 Pseudouridylate synthase n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11XU3_CYTH3 Length = 248 Score = 159 bits (403), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 91/241 (37%), Positives = 128/241 (53%), Gaps = 5/241 (2%) Query: 14 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFE 73 L I Y G+ Y+GWQ Q +VQ L+KALS V I + +GRTD GVH + Q+VH + Sbjct: 5 LDISYRGANYHGWQIQENAVTVQGVLQKALSNVLGAKIDILGSGRTDTGVHASSQIVHLD 64 Query: 74 TTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 + DAA +N LP DI ++ + V DD HARF A +R Y +Y L Sbjct: 65 SPK-EIDAALIFRINGYLPKDICIKSARLVQDDAHARFDALSRAY---VYRITLVKNPFE 120 Query: 134 KGVTH-FYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 G+ + FY P++ +RM++AA LL DF SF V + H R+G + Sbjct: 121 IGLAYYFYPPIEIDRMNKAAAILLQYEDFESFSKVHTDVTNFNCTIFHAYWERNGDMLYF 180 Query: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 +KAN F+ MVR +VG+++EVG +++ AKDR A +A E LYL V+Y Sbjct: 181 HVKANRFLRGMVRTLVGTMLEVGKGRMSLDDFVQIILAKDRKRAGISAPPEALYLSEVEY 240 Query: 253 P 253 P Sbjct: 241 P 241 >UniRef50_A5I338 Pseudouridylate synthase n=17 Tax=Firmicutes RepID=A5I338_CLOBH Length = 246 Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 128/242 (52%), Gaps = 1/242 (0%) Query: 12 IALGIEYDGSKYYGWQRQNEV-RSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 I L I+YDGSKY GWQ+Q E ++Q K+E LS + E I + +GRTD GVH QV Sbjct: 4 IKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANMQVA 63 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 +F TT LP DI V V + FH+R + ++Y Y I N + Sbjct: 64 NFHTTFQGSTDEILSYCYEYLPKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNKKFHDV 123 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 K H E LD E M A L+G +DF SF A + + ++ R + I++ + YV Sbjct: 124 FSRKYSYHVPETLDIEAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIKKDSYV 183 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + + F+H M+R + G+L+E+G HN + +L A+DR A TA ++GL++ +V Sbjct: 184 DIVYLGSGFLHKMIRILTGTLIEIGLHNLKSVDVKIILDAEDRRKAGPTAPSQGLFMTSV 243 Query: 251 DY 252 DY Sbjct: 244 DY 245 >UniRef50_C6D4K9 Pseudouridylate synthase n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D4K9_PAESJ Length = 246 Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 131/243 (53%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 IA + YDG+ + G+Q Q R++Q+++E A+ ++ E I + +GRTDAGVH GQV + Sbjct: 4 IAATVSYDGTDFNGFQSQPYGRTIQQEIELAIKKLTGEDIIILGSGRTDAGVHANGQVFN 63 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 F T + W + +N LP DI + VP+ FH+R SA + YRY I + Sbjct: 64 FLTESTIPAERWAIALNTRLPKDIVILEAHEVPEAFHSRRSAKRKTYRYTIDMGKFPDVF 123 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVV 191 + H PL+ E M + L+GE+DFTSF ++ R + + R G + Sbjct: 124 YRRYAFHHPTPLNVEAMQKGLSFLVGEHDFTSFTSIHSTKPHHVRTIYEAYLEREGQMLH 183 Query: 192 VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVD 251 + + N F+++M+R ++G+L+ VG +A +L + R+LA TA GL L+ V+ Sbjct: 184 MYMTGNGFLYNMIRIVMGTLLHVGHGKLKPEDMARILEGRKRSLAGPTAMPHGLMLMKVE 243 Query: 252 YPD 254 YP+ Sbjct: 244 YPE 246 >UniRef50_Q7TU07 tRNA pseudouridine synthase A n=1 Tax=Rhodopirellula baltica RepID=TRUA_RHOBA Length = 276 Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 134/253 (52%), Gaps = 12/253 (4%) Query: 14 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFE 73 L + YDG++Y GWQ Q E RS+Q +LE+ + +A P+ V +GRTDAGVH GQV Sbjct: 12 LTVAYDGTEYCGWQVQPEQRSIQSELERVIRPLAGRPVRVLGSGRTDAGVHAIGQVARCV 71 Query: 74 TTALRKDA-AWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVL 132 + D A +N+ LP DI V+ V+ + FH AT ++Y+Y++ R Sbjct: 72 LPVWKADTVALQRAINSKLPNDIRVKAVRETRERFHPIADATGKQYQYLVQVGGSRDPFA 131 Query: 133 SKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMH-----------I 181 ++ V P+D M AA +G +DF +F+ + + R + Sbjct: 132 NRFVNRVGGPIDHSAMQSAAAKFVGRHDFKAFQGTGAERPSTVRTIHSARWIPRVATGPT 191 Query: 182 NVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAK 241 G + +I F+++MVRN++G+++EVG + +WI E+LA++DR +A TA Sbjct: 192 GAELEGEHWCFEIDGEGFLYNMVRNLMGTMLEVGRGKKSPNWIDEVLASRDRKMAGPTAP 251 Query: 242 AEGLYLVAVDYPD 254 +GL+L VDYPD Sbjct: 252 PQGLFLCRVDYPD 264 >UniRef50_Q6MQH6 tRNA pseudouridine synthase A n=1 Tax=Bdellovibrio bacteriovorus RepID=TRUA_BDEBA Length = 262 Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 95/253 (37%), Positives = 138/253 (54%), Gaps = 6/253 (2%) Query: 11 KIALGIEYDGSKYYGWQRQN--EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 K+ + YDG+ + GWQ+Q + SV + +E+ALS+V NE IT+F +GRTDAGVH Q Sbjct: 4 KVRFTVAYDGTGFCGWQKQKPEDQISVAQVIEEALSKVFNEKITLFASGRTDAGVHALNQ 63 Query: 69 VVHFET-TALRKDAAWTL--GVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 V HF T + + W L +N++LP I + PDDFHA SAT + YRY+I N Sbjct: 64 VCHFSTHRKIDPNKKWDLCWALNSHLPPSIVAKKAWIAPDDFHATLSATHKTYRYLIVNK 123 Query: 126 RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR 185 A L++ P+D E + +++ LLG DF SF++V R + + Sbjct: 124 PRPSAHLNRYADWVRLPIDIEHLQESSKYLLGNQDFKSFQSVGTPVPDTVREIYKADWEW 183 Query: 186 HGPYVV-VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 P V+ I + F+ MVRNIVG+ + + S + E++AA+DR A A A+G Sbjct: 184 RKPGVMQFTITGSGFLKQMVRNIVGTSLFLERKGLDPSKMQEIIAAQDRMKAGPPAPAQG 243 Query: 245 LYLVAVDYPDRYD 257 LYL+ V YP D Sbjct: 244 LYLMKVYYPQDLD 256 >UniRef50_C0GG81 Pseudouridylate synthase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GG81_9FIRM Length = 246 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 96/249 (38%), Positives = 140/249 (56%), Gaps = 5/249 (2%) Query: 8 PVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 P K+ LG YDG+ Y+G+Q Q +VQ+KLE+A+ +V + + + +GRTD GVH TG Sbjct: 2 PNIKLTLG--YDGTGYHGFQLQKNAVTVQQKLEEAIEKVMGQKVRITASGRTDTGVHATG 59 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QV++F +NA LP DI + + V D FHARF A + Y Y I N Sbjct: 60 QVINFFAQTGIPPQRIPHALNAVLPRDIVIYAAEIVSDSFHARFDAVGKTYTYTIDN-GA 118 Query: 128 RPAVLSK-GVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 P VLS+ H PLDA M +AA L G++DFTSF A +T RN+ ++V + Sbjct: 119 HPQVLSRHHAYHVRFPLDANLMKQAAATLQGKHDFTSFMASGSSVKTTVRNLYRLDVEIN 178 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 PY+ + A+ F+++MVR I G+L+EVG + + + ++ AK+R A T A GL Sbjct: 179 WPYITITAAADGFLYNMVRIIAGTLIEVG-RGKRDHNLGPVIDAKNRHRAGWTVPAHGLV 237 Query: 247 LVAVDYPDR 255 L V+Y + Sbjct: 238 LREVEYNKK 246 >UniRef50_UPI0001C35668 tRNA pseudouridine synthase A n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35668 Length = 404 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 93/248 (37%), Positives = 133/248 (53%), Gaps = 5/248 (2%) Query: 10 YKIALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 YKI L +YDGS+Y GWQ+Q N ++Q KLE L ++ P+ V +GRTDAGVH Q Sbjct: 159 YKIVL--QYDGSRYDGWQKQGNTGNTIQGKLEGILLKLTGRPVEVHGSGRTDAGVHALAQ 216 Query: 69 VVHFET-TALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 +F T + +D N LP DIAV V+ V D FH+R +A + Y Y I Sbjct: 217 TANFHADTGMTEDQIRAY-FNQYLPEDIAVLSVEKVQDKFHSRLNAVQKTYLYRIEMGPK 275 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + K + L A+RM AA C+LGE+DF SF + ++ R + I + + G Sbjct: 276 KDVFERKYCYGLGKQLSADRMKEAAACVLGEHDFKSFCGNKKMKKSTVRTISDITIEKEG 335 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 +++ N F++HMVR + G+L+E+G + + E+L DR A TA EGL+L Sbjct: 336 TKLLIRYTGNGFLYHMVRILTGTLIEIGLEERSPQEMKEILLKLDRQAAGFTAPPEGLFL 395 Query: 248 VAVDYPDR 255 V Y DR Sbjct: 396 ERVMYEDR 403 >UniRef50_Q031N1 tRNA pseudouridine synthase A n=66 Tax=Streptococcaceae RepID=TRUA_LACLS Length = 253 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 87/240 (36%), Positives = 132/240 (55%), Gaps = 3/240 (1%) Query: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN-EPITVFCAGRTDAGVHGTGQVVHFET 74 I YDG+ + G+Q Q R+VQE++EK LS++ + EP+ + +GRTD+GVH GQV+HF+ Sbjct: 8 IAYDGTDFAGFQSQTNQRTVQEEIEKVLSKLNSFEPVILQGSGRTDSGVHAFGQVIHFDL 67 Query: 75 TALRKDAA-WTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 +D G++ P DIAV+ V+ VPDD+HAR+ + Y Y + N R Sbjct: 68 NGKARDLERLRFGLDTQTPADIAVKKVELVPDDWHARYQKHEKTYEYYLENSVTRSPFHR 127 Query: 134 KGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVD 193 +F PL+ E M A L+G++DFT F A R + + + Sbjct: 128 HSKAYFRYPLNFELMQGAMAKLVGQHDFTGFTASGSSVDDKVRTIYQAEIIQLDKENFKF 187 Query: 194 I-KANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 I + N F++ VRN+VG+++++G P S I ++L +K+R A TA EGLYL V Y Sbjct: 188 IFRGNGFLYKQVRNMVGTVIKIGNDRMPVSQIDKILTSKNRNFAGPTAAPEGLYLKEVKY 247 >UniRef50_C4F9Q5 Pseudouridylate synthase n=3 Tax=Coriobacteriaceae RepID=C4F9Q5_9ACTN Length = 292 Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 100/248 (40%), Positives = 137/248 (55%), Gaps = 13/248 (5%) Query: 16 IEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV---- 70 + YDG+ + G+ Q E +R+V ++ +AL + P+ + CAGRTDAGVH Q V Sbjct: 38 LGYDGAAFSGFAEQPEGLRTVAGEVRRALETILRRPVDLTCAGRTDAGVHAVSQYVSIPA 97 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 H + A+ A W + A LP DIA+ V F ARF A +R Y Y I RP Sbjct: 98 HADELAI-THARWMRAMAALLPSDIALNAVYHARPGFSARFDARSRTYTYRIVTGDARP- 155 Query: 131 VLSKGVTHFYE-PLDAERMHRAAQCLLGENDFTSFRAVQCQSRTP-WRNVMHINVTRHGP 188 +L++ VT ++ PLD + M RAA CL+GE+DF SF P RNV+ ++ R Sbjct: 156 LLTRSVTWWHRLPLDMDAMERAAACLVGEHDFKSFCKTSSAIDKPTCRNVIAVSFERASA 215 Query: 189 ----YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 ++ I NAF+H MVR IVGSL+EVGA + E W+++ LAA DR A TA A G Sbjct: 216 LGEEHIAFTITGNAFLHSMVRTIVGSLVEVGAGRRDERWLSDALAACDRRAAGPTAPARG 275 Query: 245 LYLVAVDY 252 L + V Y Sbjct: 276 LCFMDVAY 283 >UniRef50_B0S2E1 tRNA pseudouridine synthase A n=3 Tax=Bacteria RepID=TRUA_FINM2 Length = 244 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 86/243 (35%), Positives = 139/243 (57%), Gaps = 4/243 (1%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 I L ++YDGSK+YGWQ+ N++ SVQ ++EKA++++ ++P+ + AGRTD GVH GQV + Sbjct: 4 IKLTVQYDGSKFYGWQKLNDLPSVQLEIEKAVTKMVHQPVKINGAGRTDKGVHAKGQVCN 63 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYN-HRLRPA 130 F + +GVN I + + + DFHARFSA ++ Y+YI+ N + + P Sbjct: 64 FIVDTDISANQFLMGVNHFTSDSIVIVKSEEMDLDFHARFSAKSKTYKYILCNKYYMEPW 123 Query: 131 VLS-KGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 KG +Y LD + + + L+G++DFTSF + P R + I + + Sbjct: 124 FNDYKGHRKYY--LDFDLLLKCRDMLIGKHDFTSFVNDLEEDINPVRTIDEITIEKIDDD 181 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 +V KA +F+ +MVR +VGS+++V + W+ L KDR A T + GLYL+ Sbjct: 182 IVFTFKAESFLRNMVRILVGSMVDVARGRKSIDWLKNALENKDRQSAGITIEPSGLYLMD 241 Query: 250 VDY 252 ++Y Sbjct: 242 IEY 244 >UniRef50_C0QZT8 tRNA pseudouridine synthase A n=2 Tax=Brachyspira RepID=TRUA_BRAHW Length = 249 Score = 156 bits (395), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 142/246 (57%), Gaps = 4/246 (1%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 I + I+YDG+ +YGWQ Q +R+VQ ++ KA+ +V E IT++ GRTDAGVH GQV + Sbjct: 4 IKITIQYDGTDFYGWQIQPNLRTVQGEIYKAVQKVYGEKITIYGCGRTDAGVHALGQVAN 63 Query: 72 FET-TALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 F L + +N+ L D+ + + +PD F+AR SAT R Y YI++N Sbjct: 64 FRVPKMLVPINKVHIALNSYLDRDLRIIKAEEMPDSFNARASATFREYLYIVHNSSTSFP 123 Query: 131 VLSKGVTHFYEP--LDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + FY +D + ++ A+ L+GE++FTSF + + ++ + +R + + R G Sbjct: 124 FYER-YAWFYRKNVIDEKLINEYARYLIGEHNFTSFCSTEDENDSKFRYLERVKAIRKGD 182 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + I+ NAF+H+MVR IVG+L+E +P ++I ++L ++DR A TA A GLY Sbjct: 183 TIYFIIRGNAFLHNMVRIIVGTLVEGQKKKKPINFIEDILKSEDRAKAFVTAPAHGLYFR 242 Query: 249 AVDYPD 254 + D Sbjct: 243 RAFFKD 248 >UniRef50_B5ZN21 tRNA pseudouridine synthase A n=21 Tax=Alphaproteobacteria RepID=TRUA_RHILW Length = 268 Score = 156 bits (395), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 92/253 (36%), Positives = 137/253 (54%), Gaps = 15/253 (5%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + + +EYDG Y GWQRQ SVQ +E A+ + E +++ AGRTD+GVH GQV+ Sbjct: 3 RFRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSIRGAGRTDSGVHAMGQVI 62 Query: 71 HFETTALRKDAAWT-------LGVNANLPGD-IAVRWVKTVPDDFHARFSATARRYRYII 122 H + + AW+ L + L G+ +++ V+ V + F ARFSA R Y Y I Sbjct: 63 HADLSK-----AWSPYQLQNALNAHLRLAGERVSILDVEAVAEFFDARFSALRRHYLYRI 117 Query: 123 YNHRLRPAVLSKGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHI 181 + R P L G + + LD E MH AAQ L+G +DF++FRA CQ+ +P R + + Sbjct: 118 VSRRA-PLALEAGKAWWVPKVLDHEVMHAAAQRLVGRHDFSTFRAAHCQANSPVRTLDRL 176 Query: 182 NVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAK 241 +VTR G + + A +F+H+ +R+ G+L G + L A+DR A Sbjct: 177 DVTRSGELIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAP 236 Query: 242 AEGLYLVAVDYPD 254 +GLY + VDYPD Sbjct: 237 PDGLYFLQVDYPD 249 >UniRef50_Q3AW68 tRNA pseudouridine synthase A n=39 Tax=cellular organisms RepID=TRUA_SYNS9 Length = 300 Score = 156 bits (395), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 96/254 (37%), Positives = 138/254 (54%), Gaps = 6/254 (2%) Query: 5 QQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN-EPITVFCAGRTDAGV 63 +QP + +IAL ++Y+GS + GWQRQN RSVQ LE A++Q+ PI F AGRTDAGV Sbjct: 11 EQPILRRIALSLQYEGSDFCGWQRQNNARSVQAVLETAIAQLDPLRPIQSFAAGRTDAGV 70 Query: 64 HGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIY 123 H QVVHF+ + A W +N LP I VR P D+HA +SA RRYRYII+ Sbjct: 71 HAAAQVVHFDCSGPIPAAKWAPALNGRLPASIRVRESVERPRDWHACYSAVYRRYRYIIH 130 Query: 124 NHRLRPAVLSKGVTH-FYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWR--NVMH 180 N R L+ H ++ L+ E M A + ++G +DF +F ++ SR P + Sbjct: 131 NGRRPNLFLTPWTWHRYHHRLNEENMRVALEGMIGLHDFAAF--MRAGSRRPHSRTTIQD 188 Query: 181 INVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATA 240 + V R G + V+I+A+ F++ MVR ++ L+ VG H + + R A Sbjct: 189 VLVEREGDLIRVEIQASGFLYGMVRLLMAQLVAVGEHRLSVKAFEQRWRDRRRDQVREAA 248 Query: 241 KAEGLYLVAVDYPD 254 A GL L+ Y + Sbjct: 249 PARGLCLLRAGYAE 262 >UniRef50_C5NXQ0 Pseudouridylate synthase n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXQ0_9BACL Length = 265 Score = 156 bits (394), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 144/250 (57%), Gaps = 9/250 (3%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++ L YDGS Y+G+Q Q ++QE++EK+L ++ + + ++ +GRTD+GVH GQV+ Sbjct: 2 RVVLLCRYDGSNYHGFQIQPNNNTIQEEIEKSLKKINKKDVRLYMSGRTDSGVHAYGQVL 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR-LRP 129 HF+T D AW +NA +P DI + + +DFH R+++T + Y Y ++ R + P Sbjct: 62 HFDTDLNIPDEAWVKALNATIPKDIRIVGATSASEDFHVRYNSTQKTYYYKLHIGREVDP 121 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSF----RAVQCQSRTPWRNVMHINVTR 185 +L+ H ++ + E+ A Q +GE+DF+SF +V+ + RT + M ++ Sbjct: 122 FLLNYVGKHSFD-FNFEKAQEALQYFIGEHDFSSFCSKNSSVEDKVRTIYSLTMEKDLI- 179 Query: 186 HGPYVV-VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 P +V +I N F+++MVR I+G++ V A +++ E+L K+R A A A G Sbjct: 180 -NPNIVNFEITGNGFLYNMVRIIIGTIQNVAAGKYEANYVKEILEKKERQFAGPKADAAG 238 Query: 245 LYLVAVDYPD 254 LYL V Y D Sbjct: 239 LYLKEVLYDD 248 >UniRef50_B3E0A0 tRNA pseudouridine synthase A n=1 Tax=Methylacidiphilum infernorum V4 RepID=TRUA_METI4 Length = 255 Score = 156 bits (394), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 86/241 (35%), Positives = 133/241 (55%), Gaps = 1/241 (0%) Query: 14 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFE 73 L + Y GS ++GWQRQ E+ +VQ LE+A++++ EPI V AGRTDAGVH GQV F Sbjct: 10 LTLSYCGSGFHGWQRQGELPTVQRALEEAVAKIWEEPIPVEGAGRTDAGVHAKGQVASFA 69 Query: 74 TTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 + +N +LP + V + VP +F ARF A ++ Y+Y+++N + Sbjct: 70 APRKLEPEVLKRALNYHLPDTVRVWDARIVPREFSARFDAVSKTYQYLLWNDPVMDPFYL 129 Query: 134 KGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQS-RTPWRNVMHINVTRHGPYVVV 192 H +D E M+ AA+ LG+++F +F + + P R V+ G V Sbjct: 130 GRAWHIPRAMDVEMMNEAARLFLGKHNFAAFVSNPGMPVKNPVRTVLDCFFLEQGSLVFF 189 Query: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 ++KA+ F++ MVRN+VG+L++VG + ++ + R A A A GLYL+AVDY Sbjct: 190 NVKADGFLYRMVRNMVGALVKVGLGRLSRQELKKIFENQKRIEAFAAAPPWGLYLLAVDY 249 Query: 253 P 253 P Sbjct: 250 P 250 >UniRef50_UPI0001BCC844 tRNA pseudouridine synthase A n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCC844 Length = 267 Score = 155 bits (393), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 96/244 (39%), Positives = 131/244 (53%), Gaps = 2/244 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 +AL I YDG++Y+G+QRQ+ V +VQ LE AL++V E + + AGRTDAGVH GQV Sbjct: 15 NLALKIAYDGTRYHGFQRQSPPVVAVQNALEAALAEVCGETVELAAAGRTDAGVHACGQV 74 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 V+F T VN LP DIAV DF AR SA + Y Y + + Sbjct: 75 VNFFTDGRIPTERLPRAVNGLLPPDIAVTDAWEAARDFSARHSAKGKAYVYRMEQCTVPN 134 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP- 188 + PLD E M A L+G +D++SFRA +P R + I + G Sbjct: 135 PFTRNYAWQIFRPLDVEAMRAALAMLVGTHDYSSFRAAGGAPMSPVRTIDEIRLEDEGEG 194 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + + N F++HMVRNI+ +++ VG AE+ AA+DR LA+ TA A GLYL+ Sbjct: 195 RLSCYLHGNGFLYHMVRNIMSTVVSVGQERISVGRFAEIFAARDRRLASPTAPACGLYLL 254 Query: 249 AVDY 252 VDY Sbjct: 255 HVDY 258 >UniRef50_B0MNN1 Pseudouridylate synthase n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MNN1_9FIRM Length = 250 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 133/246 (54%), Gaps = 4/246 (1%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 + + + Y+G+ Y+G+QRQN S+Q+ +E+ LS++ E IT+ RTD GVH V + Sbjct: 4 LKVTMAYNGTAYHGYQRQNNANSIQQTVEEVLSKLLCEDITINGCSRTDTGVHARAFVFN 63 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 +T + G NA LP DIA + +PD FHARF + + Y Y IY +R Sbjct: 64 VKTNCPIPCEGFIKGGNALLPQDIAFLSCEDMPDSFHARFDSKGKEYIYKIYTGDVRDVF 123 Query: 132 LSKGVTHF-YEPLDAERMHRAAQCLLGENDFTSFRAVQCQSR--TPWRNVMHINVTRHGP 188 + H+ Y+P D E+M +AA+ ++GE+DF SF + + T R V I+V + G Sbjct: 124 SADTALHYPYKP-DIEKMRKAARLIVGEHDFASFCKAEAKEHLLTTVRTVYSIDVEQTGD 182 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 +V + + N F+H+MVR IVG+L+ + + E I L DR A T GLYL Sbjct: 183 FVEIKVCGNGFLHNMVRIIVGTLIYISEGKRTEQDIINALTKPDREFAGKTVPPCGLYLN 242 Query: 249 AVDYPD 254 V Y + Sbjct: 243 KVFYEN 248 >UniRef50_C6PXV6 Pseudouridylate synthase n=2 Tax=Clostridium RepID=C6PXV6_9CLOT Length = 249 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 136/246 (55%), Gaps = 5/246 (2%) Query: 12 IALGIEYDGSKYYGWQRQN-----EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGT 66 + + I+YDGS+Y GWQ+QN V ++Q+K+E LS++ E I V GRTD GVH Sbjct: 4 LKMLIQYDGSRYKGWQKQNHKDNNSVSTIQDKIESVLSKMTGEDIQVVGCGRTDTGVHAE 63 Query: 67 GQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 V +F T ++ + LP DI V+ ++ + FHAR++A ++ Y Y I N++ Sbjct: 64 NYVANFHTDSILTVEDMLKYLYEFLPEDIVVKSLRDTSERFHARYNAKSKTYLYTINNNK 123 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 R K H E L+ M AA+ L G +DF SF +++ +++ R + +I++T Sbjct: 124 FRNVFNRKYAYHVEENLNLSEMRDAAEVLTGTHDFQSFTSLKSNTKSTVRTINYISITEE 183 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 + +++ N+F+ +MVR IVG+L++VG S + ++L K R A A A+GL Sbjct: 184 HGMIGIEVNGNSFLLNMVRIIVGTLLDVGKGILKPSDVEKILYEKKRAEAGPMAAAKGLC 243 Query: 247 LVAVDY 252 L + Y Sbjct: 244 LKDIQY 249 >UniRef50_UPI0001973C8C tRNA pseudouridine synthase A n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973C8C Length = 275 Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 92/265 (34%), Positives = 142/265 (53%), Gaps = 21/265 (7%) Query: 12 IALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 I + ++YDGS+Y GWQ+Q N ++Q KLE L ++A EP+ + +GRTDAGVH GQV Sbjct: 5 IKIVLQYDGSRYDGWQKQGNTKNTIQGKLEAVLEKLAGEPVEIHGSGRTDAGVHALGQVA 64 Query: 71 HF-----------ETTALRKD---------AAWTLGVNANLPGDIAVRWVKTVPDDFHAR 110 +F + T +K+ AA +N LP DIAV VP+ FH+R Sbjct: 65 NFRLEERCLEELVDKTPEKKENGGKASSVSAAVMDYLNRYLPEDIAVISAMEVPERFHSR 124 Query: 111 FSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQ 170 +A + Y Y I + K + E LD M AA+ LLG +DF +F + + Sbjct: 125 LNAVEKTYLYQIETAGRKNVFERKYIYGLGEELDLLAMKEAAKLLLGSHDFRAFSSAKRM 184 Query: 171 SRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAA 230 ++ R + I + R G V+++ N F+++MVR + G+L+E+G H + + + L + Sbjct: 185 KKSTVRELRKIEIHRDGSRVLLEFTGNGFLYNMVRILTGTLIEIGLHRRTVDSVRKALES 244 Query: 231 KDRTLAAATAKAEGLYLVAVDYPDR 255 +DR A TA AEGL L +V Y ++ Sbjct: 245 QDRENAGFTAPAEGLLLKSVRYDEK 269 >UniRef50_UPI00016A3E9E tRNA pseudouridine synthase A n=1 Tax=Burkholderia ubonensis Bu RepID=UPI00016A3E9E Length = 193 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 80/178 (44%), Positives = 114/178 (64%) Query: 87 VNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAE 146 NA LP +AV+W K +PD FHARFSA R Y Y +Y H +R +L + PLD + Sbjct: 1 TNAFLPPTVAVQWAKPMPDAFHARFSAFERTYYYALYVHPVRSPMLDARAGWIHTPLDDD 60 Query: 147 RMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRN 206 M AA L+GE+DF++FR+ +CQS+TP +++ I++ R G ++ +ANAF+HHMVRN Sbjct: 61 AMRAAAAHLIGEHDFSAFRSSECQSKTPVKHLYQIDIRRAGHFLHFRFRANAFLHHMVRN 120 Query: 207 IVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDLPKPPMG 264 ++G L+ VG P WIA++LA +DR AA T A+GLYL V YP + +P +G Sbjct: 121 LMGCLVAVGRGRYPAEWIADVLAGRDRNRAAPTFMADGLYLAHVGYPAEFAVPSAQLG 178 >UniRef50_A0LRQ0 Pseudouridylate synthase n=2 Tax=Actinomycetales RepID=A0LRQ0_ACIC1 Length = 297 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 103/262 (39%), Positives = 141/262 (53%), Gaps = 24/262 (9%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN--EPITVFCAGRTDAGVHGTGQ 68 ++ + + YDG+ + G+ RQ +R+VQ ++E+AL+ V EP V AGRTDAGVH GQ Sbjct: 20 RLRIDLGYDGTDFAGFARQPGLRTVQAEVERALAVVLRLPEPPPVTAAGRTDAGVHARGQ 79 Query: 69 VVHFET--TALRKDAAWTLG-----------VNANLPGDIAVRWVKTVPDDFHARFSATA 115 V+H + ALR A G +N LP DIAV V P F ARFSA A Sbjct: 80 VLHVDVPIDALRVVGAAETGAADAVAQLAARLNGVLPDDIAVHAVGLAPPGFDARFSALA 139 Query: 116 RRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSR--- 172 RRY Y + + R P + + + PLD M+ A LLGE+DF +F C+ R Sbjct: 140 RRYSYRVADRRWDP-LRRRDTLRWPRPLDETAMNAAGAALLGEHDFAAF----CRRRENA 194 Query: 173 TPWRNVMHINVTRHGPYVVV-DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAK 231 T R ++ R G V+V ++A+AF H MVR +VG+++ VGA +P W AE+LAA+ Sbjct: 195 TTIRRLLRFEWLRDGDGVLVAQVEADAFCHSMVRALVGAVLAVGAGRRPVGWPAEVLAAR 254 Query: 232 DRTLAAATAKAEGLYLVAVDYP 253 R A GL L V YP Sbjct: 255 ARDPAVTVVPPHGLTLEEVCYP 276 >UniRef50_Q813Z9 tRNA pseudouridine synthase A 2 n=77 Tax=Firmicutes RepID=TRUA2_BACCR Length = 245 Score = 153 bits (387), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 132/240 (55%), Gaps = 1/240 (0%) Query: 14 LGIEYDGSKYYGWQR-QNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHF 72 L I+YDG+++ GWQR N ++Q K+E +S++ + I + RTDAGVH QV +F Sbjct: 6 LTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALNQVANF 65 Query: 73 ETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVL 132 ++ + +N LP DI++ V+ V D FHAR+++ A+ Y Y I+N + Sbjct: 66 QSDEKLVEHKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEEHTNPFM 125 Query: 133 SKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 K H + L+ + M AA+ L+G +DFT+F + + ++ R V ++V +V + Sbjct: 126 RKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVMEEAGFVQI 185 Query: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 + N F+H+MVR IVG+L+EVG I +L K R A+A GLYL V++ Sbjct: 186 RVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGLYLENVEF 245 >UniRef50_D0RR37 Pseudouridylate synthase n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RR37_9RICK Length = 245 Score = 153 bits (387), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 81/238 (34%), Positives = 132/238 (55%), Gaps = 1/238 (0%) Query: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 +EY+G+ + GWQ Q +VQ+ +EK+ ++ +F +GRTD+GVH TGQV HF+ Sbjct: 8 VEYNGTDFEGWQSQPSGNTVQQIIEKSFLEIQLNKTKIFGSGRTDSGVHATGQVFHFDYE 67 Query: 76 ALRKDAAWTLGVNANLPG-DIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSK 134 LG+N L +I+V + ++F +R A R Y Y I N P +L Sbjct: 68 DKLDCKKILLGLNHFLKKKNISVLSLDFTNNNFDSRRDAKLRTYTYKILNRIASPVILEN 127 Query: 135 GVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDI 194 V H + LD + M +A+Q LG +DFT+FRA C++ +P R +++ + ++ ++ + Sbjct: 128 QVWHVIKNLDFKLMQKASQIFLGSHDFTTFRASSCEATSPIREIIYSELKKNNDQIIYIV 187 Query: 195 KANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 K+ +F+ H VR++VG++ VG + E L +K+R A A A GLYL V+Y Sbjct: 188 KSRSFLQHQVRSMVGAIKFVGEKKWSLKDLDEALKSKNRNNCATPAPACGLYLENVEY 245 >UniRef50_B1I1B5 tRNA pseudouridine synthase A n=5 Tax=Clostridia RepID=TRUA_DESAP Length = 250 Score = 153 bits (386), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 87/251 (34%), Positives = 137/251 (54%), Gaps = 15/251 (5%) Query: 11 KIALGIEYDGSKYYGWQRQNE--VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + L + YDG+ Y+G+Q+Q+ + ++QE LE+ L++++ + V A RTDAGVH GQ Sbjct: 3 NVRLTLAYDGTAYHGFQKQSGSGLPTIQETLERCLAELSGAALKVTGASRTDAGVHARGQ 62 Query: 69 VVHFETTALRKDAAWTL-------GVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYI 121 VV+F T W + +N LPGDIA + VP DFHAR+SA A+ Y Y Sbjct: 63 VVNFVT------GRWGIPTERIPAALNGVLPGDIAALDAREVPADFHARYSAVAKTYSYT 116 Query: 122 IYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHI 181 +YNH +R H LD M AA+ L+G +DF++F+A ++ R + Sbjct: 117 LYNHPVRSPFQRLYSLHVPRALDLRAMRLAARHLMGRHDFSTFQAAGRPVQSAVRTLTRA 176 Query: 182 NVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAK 241 ++ P V + +A+ F+++MVR + G+L+EVG + +++A+ DR A T Sbjct: 177 DIEAQAPLVRLVFRADGFLYNMVRIMAGTLLEVGLERLDPEALPDIIASGDRARAGPTVP 236 Query: 242 AEGLYLVAVDY 252 GL L V+Y Sbjct: 237 PHGLCLEEVEY 247 >UniRef50_UPI0001C37706 tRNA pseudouridine synthase A n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37706 Length = 257 Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 124/241 (51%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 + + I Y G+ Y+G+Q QN +VQ LEK LS+V NEP+++ RTD GVH + Sbjct: 4 LKVTIAYRGTNYHGFQIQNNAVTVQGTLEKHLSKVLNEPVSITGCSRTDTGVHANMFCFN 63 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 +T + + GVN LP DI++ + VP DFHARF + Y Y ++ + Sbjct: 64 VKTNSRISTLGFCRGVNGELPDDISILSCEEVPIDFHARFDCKGKEYIYKMHCSESKDPF 123 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVV 191 H+ P D E +AAQ +G +DF+SF A T R + + G V+ Sbjct: 124 APDMKFHYRRPFDIEAARKAAQYFVGTHDFSSFCADCTNVSTTVRTIYSFKIENSGDTVI 183 Query: 192 VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVD 251 + +K N F+++M+R + G+L++V + +L AKDR A TA A GLYL V Sbjct: 184 MLVKGNGFLYNMIRIMAGTLIDVSEKRFSPDDMPRILEAKDRLQAGRTAMAHGLYLNRVF 243 Query: 252 Y 252 Y Sbjct: 244 Y 244 >UniRef50_A4EA88 Pseudouridylate synthase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EA88_9ACTN Length = 274 Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 98/247 (39%), Positives = 128/247 (51%), Gaps = 12/247 (4%) Query: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 + YDGS Y G+ Q +V +L +A+ + PI + CAGRTDAGVH Q + T Sbjct: 21 VAYDGSSYSGFAEQPGQATVAGELRRAIETLLRRPIDLTCAGRTDAGVHAVAQYISVPVT 80 Query: 76 ----ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 AL + W ++A LP DIA+ V F ARF A +R Y Y I + RP V Sbjct: 81 DAELALTRRR-WLRAMDALLPKDIAINEVYRARKGFSARFDARSRTYTYRIADRDARP-V 138 Query: 132 LSKGVTHFYE-PLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPW-RNVMHINVTRHGPY 189 LS+G ++ PLD E M A LLGE DF SF V P R VM + Sbjct: 139 LSRGAVWWHRYPLDVEAMSAACPALLGEQDFKSFCKVASAVGKPTHRCVMRAEFGHEVAF 198 Query: 190 ----VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 + I+ NAF+H MVR IVG+L+E+G H + W+ E++ A DRT A TA A GL Sbjct: 199 GEDILTFTIEGNAFLHSMVRTIVGTLVEIGMHRRKPEWMREVIDACDRTAAGPTAPACGL 258 Query: 246 YLVAVDY 252 + VDY Sbjct: 259 TFMGVDY 265 >UniRef50_B9DM46 tRNA pseudouridine synthase A n=6 Tax=Staphylococcaceae RepID=TRUA_STACT Length = 267 Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 85/241 (35%), Positives = 127/241 (52%), Gaps = 2/241 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +I + I Y GS + G+Q Q R+VQ++ EK L ++ + + + RTD GVH Q Sbjct: 2 RILVKISYQGSNFLGFQIQQHGRTVQQQFEKILKRMHKRHVRIHPSSRTDRGVHAIEQYF 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+T W +N+ LP DI V V V DDFH R+ +RYRY +Y + R Sbjct: 62 HFDTELNIAPDKWQYAMNSALPDDIYVNEVSIVDDDFHCRYDCVGKRYRYKVYQGKHRDV 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 +S T + + LD E+M+ AAQ +G +DFT F + + + + R + + + Sbjct: 122 FMSGLKTFYADSLDLEKMNEAAQQFIGTHDFTGFCSQKTEVESKERTLYQSEIIKTENGF 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVG-AHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 + + F+++MVR +V L+EVG QPE + LL AKDR TA AEGLYL Sbjct: 182 DYIVTGSGFLYNMVRVLVAFLIEVGKGKRQPEE-VPILLEAKDRKQVPFTAPAEGLYLEK 240 Query: 250 V 250 + Sbjct: 241 I 241 >UniRef50_B5CQB6 Pseudouridylate synthase n=9 Tax=Bacteria RepID=B5CQB6_9FIRM Length = 297 Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 128/245 (52%), Gaps = 2/245 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +I L + YDG+ Y GWQ QN V +++ +L L+Q+ + + V A RTDAGVH G V Sbjct: 28 RIRLTVAYDGTDYCGWQVQNNVATIEGELNTVLTQLTGQTVKVIGASRTDAGVHARGNVA 87 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 F+T + + VNA LP DI V V D+H R T + Y Y + N +L P Sbjct: 88 VFDTESSIPPERFLYAVNALLPEDIVVVDSCEVAADWHPRHCNTEKTYEYRVLNQKL-PD 146 Query: 131 VLSKGVTHFYE-PLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 + + T+F PLD ERM +AA L GE+DF SF V R + + V R Sbjct: 147 PMRRRDTYFVSFPLDLERMRQAAGYLEGEHDFKSFCNVHTHVEDTVRTIYRLEVIREENV 206 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 + ++ N F+++MVR + G+L+ VG I +L AKDR A T +GL L+ Sbjct: 207 ITFRVRGNGFLYNMVRILAGTLIGVGRGLIDPEEIPAMLEAKDRQAAGMTVPPQGLTLMK 266 Query: 250 VDYPD 254 +DY D Sbjct: 267 IDYLD 271 >UniRef50_Q45557 tRNA pseudouridine synthase A n=5 Tax=Firmicutes RepID=TRUA_BACSV Length = 244 Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 133/240 (55%), Gaps = 2/240 (0%) Query: 14 LGIEYDGSKYYGWQR-QNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHF 72 L I+YDG +Y GWQR N ++Q K+E LS++ I + +GRTDAGVH GQV + Sbjct: 6 LMIQYDGGRYKGWQRLGNGENTIQGKIETVLSEMVGRKIEIIGSGRTDAGVHALGQVANV 65 Query: 73 ETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVL 132 + + +N LP DI+V V VPD FH+R++A + Y Y I+N + Sbjct: 66 KLSENFTVKEVKEYLNRYLPHDISVTEVTLVPDRFHSRYNAKDKTYLYKIWNEDYTHPFM 125 Query: 133 SKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 K H + L + M +A+Q +GE+DFT+F + + +T R + I + + ++ + Sbjct: 126 RKYSLHIEKKLHIDNMVKASQLFVGEHDFTAFSNAKSKKKTNTRTIHSITIQDNQGFIDI 185 Query: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 + + F+++MVR +VG+L+EVG + + +L +KDR+ A A A GLYL + + Sbjct: 186 RVCGDGFLYNMVRKMVGTLIEVGLGEKEPEQVLTILESKDRS-QAGFADATGLYLEGISF 244 >UniRef50_Q6ANM1 tRNA pseudouridine synthase A 1 n=1 Tax=Desulfotalea psychrophila RepID=TRUA1_DESPS Length = 251 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 84/248 (33%), Positives = 127/248 (51%), Gaps = 7/248 (2%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 I L I +DG+ Y GWQ+Q+ ++Q ++E L +++ + I++ AGRTDAGVH G H Sbjct: 4 ICLLIAFDGTDYSGWQKQHHANTIQGEIEARLKRLSVKEISLHGAGRTDAGVHADGMTAH 63 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 F T + +N LPG I + V+ + DDFHARF+AT + Y Y ++ + P Sbjct: 64 FHTDTRLTCNDFQRALNRMLPGAIRILQVREMADDFHARFAATGKEYHYRLFTGGVIPPQ 123 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVV 191 + H +P+D E M + Q ++G +DF+SF + +T + Y Sbjct: 124 KRLYMLHQEKPIDQEAMQKCLQIIIGTHDFSSFENTGSRDKTRTGGKGAVRTILEARYEQ 183 Query: 192 VD-------IKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 + + F+ +MVRNIVGS++EVG + W + L KDR A TA A G Sbjct: 184 FEEDSWHFVFIGDGFLRNMVRNIVGSILEVGRGKESVEWFEQALKEKDRNAAGPTAPAHG 243 Query: 245 LYLVAVDY 252 L L V Y Sbjct: 244 LKLFQVFY 251 >UniRef50_C8W7W7 Pseudouridylate synthase n=4 Tax=Coriobacteriaceae RepID=C8W7W7_ATOPD Length = 294 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 94/251 (37%), Positives = 134/251 (53%), Gaps = 8/251 (3%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 + + + Y G+ + G+ Q RSV L +AL V + + CAGRTDAGVH Q V Sbjct: 38 LVIKLGYRGAAFCGFAEQPTQRSVAGDLRRALETVLRREVELTCAGRTDAGVHAQVQYVS 97 Query: 72 ---FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 ++ + A DI++R + P F ARF A AR YRY I R Sbjct: 98 LPVYDADLSFSGEKLVRSLTALTDDDISIRQLFRAPQGFSARFDAQARSYRYRICADSAR 157 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSF-RAVQCQSRTPWRNVMHINVTR-- 185 P + V + LDA+ M +AAQ L+GE+DF SF +A+ + + R V ++V Sbjct: 158 PILGWDHVWWYNGHLDADLMDKAAQALVGEHDFKSFCKAISAEGKPTHRFVERLSVEEIE 217 Query: 186 --HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 + VDI NAF+H+MVR IVG+L+E+G ++P WI E+LAAK+R A + A A+ Sbjct: 218 EAGEKLIAVDITGNAFLHNMVRTIVGTLVEIGRGHRPVEWIDEVLAAKNRIAAGSCAPAQ 277 Query: 244 GLYLVAVDYPD 254 GL V V YP+ Sbjct: 278 GLTFVNVRYPE 288 >UniRef50_A5N4T0 tRNA pseudouridine synthase A n=25 Tax=Clostridium RepID=TRUA_CLOK5 Length = 244 Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 129/241 (53%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 I L IEYDG+ Y GWQRQ ++Q++LE+A+ + E V + RTDAGVH G V + Sbjct: 4 IKLVIEYDGTNYSGWQRQYNAITIQQRLEEAIEKATGEFSPVIGSSRTDAGVHARGFVCN 63 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 F T + + + +N LP DIAV K V FH+R+ T + Y Y I P + Sbjct: 64 FFTASKIPTSNIKMVLNTLLPEDIAVLDSKEVDSSFHSRYFTTGKEYSYTIVTGDRPPVI 123 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVV 191 + V +F LD E++ + + +G +DF++F+ +R+ R + + V + + Sbjct: 124 GRQYVYYFRRKLDIEKIKNSCEYFIGTHDFSAFKKKGSTARSSIRTIKELTVLKEKNIIK 183 Query: 192 VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVD 251 +I + F+++MVR I+G+L+EVG ++ +L +KDR A A+GL L V Sbjct: 184 FNIVGDGFLYNMVRIIIGTLLEVGLGRFSIEYVKYILESKDRAKAGKPVPAKGLCLEKVF 243 Query: 252 Y 252 Y Sbjct: 244 Y 244 >UniRef50_Q04BY4 tRNA pseudouridine synthase A n=79 Tax=Firmicutes RepID=TRUA_LACDB Length = 262 Score = 150 bits (379), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 91/255 (35%), Positives = 139/255 (54%), Gaps = 7/255 (2%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN-EPITVFCAGRTDAGVHGTGQV 69 + L + YDG ++G+Q Q R++Q +E+ L Q+ + + VF +GRTDAGVH GQV Sbjct: 4 RYKLTLSYDGHDFHGFQSQPGQRTIQGTVEEILKQMTKGQEVRVFGSGRTDAGVHSVGQV 63 Query: 70 VHFETTALRKDAAWTL-GVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 +HF+ AA + +N+ LP D+ + V DFH+RFS + YRY + Sbjct: 64 IHFDYPGREIPAANMIKALNSQLPMDMVFTDCEIVDKDFHSRFSVKGKWYRYRVSLDGFV 123 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT--RH 186 H+ P+D E+M AA+ LLG +DFTSF A Q R++ ++NV Sbjct: 124 NPFKRFYTGHYPYPVDVEKMQEAAKDLLGRHDFTSFAASGGQIEDKVRDMYYVNVALDEE 183 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 V++D A F+++MVR +V +L+E+G +P + ++AAK+R TA+A GLY Sbjct: 184 NNEVIMDFIATGFLYNMVRILVATLLEIGNGRRPVHDLKRVIAAKNRLEVQQTAQACGLY 243 Query: 247 LVAVDY---PDRYDL 258 L V Y P +Y L Sbjct: 244 LYHVFYEEVPRKYRL 258 >UniRef50_C2DZZ6 Pseudouridylate synthase n=9 Tax=Lactobacillus RepID=C2DZZ6_9LACO Length = 262 Score = 150 bits (379), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 92/260 (35%), Positives = 142/260 (54%), Gaps = 9/260 (3%) Query: 8 PVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN-EPITVFCAGRTDAGVHGT 66 P +K+ + YDG ++G+Q+Q R+VQ +E+AL ++A + I V +GRTDAGVH Sbjct: 2 PRFKMTMA--YDGHLFHGFQKQPNQRTVQGTIEEALKKMAKGQRIVVHGSGRTDAGVHAL 59 Query: 67 GQVVHFETTALRKDAA-WTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 GQV+HF+ A L +N+ +P DI + + V +DFH ++S + YRYI+ Sbjct: 60 GQVIHFDFPNDNIPANRMVLALNSMMPTDIIFKDAEIVNEDFHVQYSTHGKWYRYIVNQD 119 Query: 126 RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR 185 R H+ L+ +M AA LLGE+DFTSF A Q R + ++ + + Sbjct: 120 RFVDPFKRFYTGHYPYKLNVSKMQEAALDLLGEHDFTSFAASGGQIIDKVRTIYYVKIWQ 179 Query: 186 HGPY--VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 ++ D N F+++MVR +VG+L+E+G +P + ++ AKDR TA A Sbjct: 180 KSEENEIIFDFIGNGFLYNMVRIMVGALLEIGNERRPVHDLKRVILAKDRQEVRNTAPAS 239 Query: 244 GLYLVAVDY---PDRYDLPK 260 GLYL V Y P++Y L K Sbjct: 240 GLYLYHVFYEEVPEKYRLDK 259 >UniRef50_Q7TU31 tRNA pseudouridine synthase A n=7 Tax=Prochlorococcus marinus RepID=TRUA_PROMP Length = 268 Score = 150 bits (378), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 131/245 (53%), Gaps = 1/245 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++AL I+YDGS + GWQRQ SVQE +E L +++N+ I F +GRTDAGVH +GQV+ Sbjct: 3 RVALVIQYDGSYFSGWQRQKNAISVQETIENCLFKISNQIIKTFASGRTDAGVHASGQVI 62 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+ L + +N+ LP I + V +HA +SA R YRY+I N+++ Sbjct: 63 HFDIDFLIPIDRYADVLNSRLPHTIRILESVEVKSSWHACYSAVYRHYRYVINNNKIPNL 122 Query: 131 VLSKGVTHFYEP-LDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 L+K H Y+ LD M A ++GE+DF +F+ T + I + R Sbjct: 123 FLNKWSWHRYQKYLDEVSMSIALDGMIGEHDFFAFQKSGSNRSTSVTTIKDIKLERTEDL 182 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 +++DIKA F++ MVR+IVG L+ VG + K + +A A+GL V Sbjct: 183 ILIDIKATGFLYGMVRSIVGQLVLVGEKKITPDIFKDRWVLKKKHDVRESAPAKGLCFVN 242 Query: 250 VDYPD 254 Y + Sbjct: 243 SVYEE 247 >UniRef50_C9KPE0 Pseudouridylate synthase n=2 Tax=Veillonellaceae RepID=C9KPE0_9FIRM Length = 264 Score = 150 bits (378), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 91/247 (36%), Positives = 130/247 (52%), Gaps = 2/247 (0%) Query: 12 IALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 I L + YDG+ Y+G+QRQ + +VQ LE+ L + + I + AGRTDAGVH GQVV Sbjct: 16 IVLKVAYDGTAYHGFQRQTPPIVAVQNILEEKLQTIFGDTIELAAAGRTDAGVHAYGQVV 75 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 +F T N+ LP DI VR DF AR SA ++ Y Y I + Sbjct: 76 NFFTDGRIPVDRIARAANSLLPDDIVVRAAGEADTDFSARHSAKSKTYVYRIQQGEVPDP 135 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH-GPY 189 + ++ + PLD M A +LG +DF++FRA +P R + + G Sbjct: 136 MTARYAWYIRRPLDVAAMREALGAILGTHDFSAFRASGGAPMSPVRTMYEATIEEAAGQQ 195 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 ++ I + F++HMVRNI+G+L VG + E+L +DRT A+ATA A GLYL Sbjct: 196 LICRIHGSGFLYHMVRNIIGTLANVGLGVLTPARFGEILEGRDRTKASATAPACGLYLEH 255 Query: 250 VDYPDRY 256 VDY + + Sbjct: 256 VDYGEAF 262 >UniRef50_Q6G7A2 tRNA pseudouridine synthase A n=59 Tax=Staphylococcus RepID=TRUA_STAAS Length = 267 Score = 149 bits (377), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 131/250 (52%), Gaps = 1/250 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +I + I Y G+ + G+Q Q R+VQ++ EK L ++ + + + RTD GVH Q Sbjct: 2 RILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQYF 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+T + W +N LP DI V V TV DDFH R+ +RYRY +Y + R Sbjct: 62 HFDTELNIPMSQWQYAMNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDP 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 S T E LD ++M+RAAQ +G +DFT F + + + + R + + + Sbjct: 122 FQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTDDGF 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + + F+++MVR +V L+EVG S + +LL +K+R TA AEGLYL + Sbjct: 182 DYIVTGSGFLYNMVRVLVAFLIEVGKGRHEISDVPKLLESKNRKNVPFTATAEGLYLEKI 241 Query: 251 DYPDRYDLPK 260 Y D +L K Sbjct: 242 -YLDENELLK 250 >UniRef50_C8WTU3 Pseudouridylate synthase n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WTU3_ALIAD Length = 262 Score = 149 bits (377), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 91/246 (36%), Positives = 129/246 (52%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +I L + YDGS ++G+ RQ +R+VQ LE L ++ I V +GRTD GVH QVV Sbjct: 6 RIRLVLGYDGSGFHGFARQEGLRTVQGVLEDELRRMLGVDILVEGSGRTDRGVHARAQVV 65 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+ + LP D+ R V + FHARFS + YRY + L Sbjct: 66 HFDLPYGPPADRMVHVLRRRLPADLLPRDAGEVDEGFHARFSVVRKTYRYTLDLAPLPSL 125 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + H EPLD M AA+ LLGE+DFTSF A + + R R + + + G + Sbjct: 126 YWYRFSWHHPEPLDLAAMQEAARHLLGEHDFTSFCAAEARQRDKVRRIDRVEFRQDGSRL 185 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 ++ + N F+ +MVR +VG+L++VG + I +L A+DR LA TA GL L V Sbjct: 186 HIEFEGNGFLQYMVRILVGTLVKVGRGQERPDRIPLILEARDRRLAGETAPPHGLCLWNV 245 Query: 251 DYPDRY 256 +YP Y Sbjct: 246 EYPPEY 251 >UniRef50_Q253C0 tRNA pseudouridine synthase A n=12 Tax=Chlamydiaceae RepID=TRUA_CHLFF Length = 268 Score = 149 bits (377), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 91/253 (35%), Positives = 131/253 (51%), Gaps = 9/253 (3%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++ L + Y G+ Y GWQRQ S+QE +E AL++V +PI V +GRTD+GVH GQV Sbjct: 3 RVVLLLAYQGTAYAGWQRQPNDLSIQEVIESALARVLGKPIVVSSSGRTDSGVHAYGQVA 62 Query: 71 HF---ETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 HF + + + +NA LP DI +R V +FHARFSA A+ YRY + Sbjct: 63 HFSQPDHPLFSQPQSIKKMLNAILPKDIVIRDVVLSDVNFHARFSAIAKEYRYSLTR--- 119 Query: 128 RPAVLSKGVTHFYEP---LDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT 184 P L Y P + + M + A+ LLG +DF SF + R + +++ Sbjct: 120 SPKPLPWQRYFAYYPRHSIKIDLMQKGAKYLLGTHDFASFANHGRDYTSTERTLFKLDII 179 Query: 185 RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 + V + K N F++ MVRNIVGSL+++ P +I E+LA K R A + Sbjct: 180 DNEEIVTIICKGNGFLYKMVRNIVGSLLDISKEKYPPEYIQEILAQKSRRKGPPAAPSHA 239 Query: 245 LYLVAVDYPDRYD 257 L L V YP Y+ Sbjct: 240 LSLHHVCYPKPYN 252 >UniRef50_Q1GE00 tRNA pseudouridine synthase A n=2 Tax=Ruegeria RepID=TRUA_SILST Length = 259 Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 93/250 (37%), Positives = 129/250 (51%), Gaps = 7/250 (2%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + AL +EY G + GWQRQ + SVQ +E AL+++ T+ AGRTD GVHG GQV Sbjct: 3 RFALKVEYHGKPFAGWQRQKDQPSVQGAIEAALARIEPGEHTIAAAGRTDTGVHGLGQVA 62 Query: 71 HFETTALRKDAAWTLGVNANL-PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 H + + +N +L P +A+ V D++HARFSA R+Y + I R P Sbjct: 63 HCDLEKNWDPFRLSEALNYHLKPAPVAIVDAALVDDEWHARFSAVERQYLFRILMRRA-P 121 Query: 130 AVLSKG-VTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR--- 185 A +G V LD M A LLG +DFT+FR+ CQ+ +P + + + V R Sbjct: 122 ATHDEGQVWQIKHDLDVAAMQAGANMLLGNHDFTTFRSSICQAASPVKTLDELRVERVQG 181 Query: 186 -HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 GP V ++A +F+H+ VR+ VG+L VG + L AKDR G Sbjct: 182 LSGPEVHFHVRARSFLHNQVRSFVGTLERVGTGAWSPEDVKHALEAKDRAACGPVCPGHG 241 Query: 245 LYLVAVDYPD 254 LYL V YPD Sbjct: 242 LYLARVGYPD 251 >UniRef50_B3QUL0 Pseudouridylate synthase n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QUL0_CHLT3 Length = 265 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 82/244 (33%), Positives = 136/244 (55%), Gaps = 5/244 (2%) Query: 12 IALGIEYDGSKYYGWQRQNE---VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + +EYDG+ + GWQRQ + +++Q ++E L +V EP+ + AGRTDAGVH Q Sbjct: 21 LKMLLEYDGTDFAGWQRQPQNLHQKTIQGEIESVLCRVLQEPVELIAAGRTDAGVHAKAQ 80 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V +F T + +N LP I + ++ P++F+ARF A +R YRY + Sbjct: 81 VANFLTENSLSISRLKHALNGLLPSQIKIIEIEDAPENFNARFDAKSRTYRYFLLTR--Y 138 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 A+LS+ + DA M+ Q +LG++DFTSF Q++T + + Sbjct: 139 SALLSRFTGIYRYDFDARAMNACCQEILGQHDFTSFSKAGSQTKTRICTIEKARWYQRKN 198 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 ++++I+AN F+H MVR +VG++++VG + +AKD LAA +A+ +GL+L Sbjct: 199 GLMLEIRANRFLHSMVRLLVGTMIKVGNGELSVQDFDAIFSAKDVCLAATSAQPQGLFLW 258 Query: 249 AVDY 252 V+Y Sbjct: 259 HVEY 262 >UniRef50_Q2JUJ7 Pseudouridylate synthase n=2 Tax=Synechococcus RepID=Q2JUJ7_SYNJA Length = 287 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 92/244 (37%), Positives = 124/244 (50%), Gaps = 2/244 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +IAL I+Y GS + GWQRQ R+VQ LE+A++ A P+ ++ AGRTD GVH +GQV Sbjct: 5 RIALKIQYLGSGFRGWQRQAGHRTVQGVLEEAIALRAGHPVALYGAGRTDTGVHASGQVA 64 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+TT+ W +N LP D+ V VPD +HARFSA RRYRY+I N L Sbjct: 65 HFDTTSGIPPTEWARVLNDCLPEDVVVLASAQVPDFWHARFSARWRRYRYLILNRELPDV 124 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 PL E M A LLGE+ +FR V + R G + Sbjct: 125 FWRLFSWQVRWPLQVEPMAEALNSLLGEHSLEAFRRRGSDRPHSRVQVQEVLCQRLGDLI 184 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKD--RTLAAATAKAEGLYLV 248 ++++A+ F++ M+R +VGSL VG L D R +A +GL LV Sbjct: 185 SIEVQASGFLYRMMRLLVGSLEVVGRGEISPQQFVHLWQHNDWSRMRTRYSAPPQGLCLV 244 Query: 249 AVDY 252 V Y Sbjct: 245 DVGY 248 >UniRef50_A6NVS7 Pseudouridylate synthase n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NVS7_9BACE Length = 249 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 85/244 (34%), Positives = 128/244 (52%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 IAL + Y G+ Y+GWQ Q +V+E LEKA++ V P+ AGRTDAGVH + Sbjct: 3 NIALKLMYVGTAYHGWQIQKNAVTVEETLEKAIASVVGHPVKCTGAGRTDAGVHAENYIA 62 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 +F TT+ L VN LP DI V V D F+A S + Y Y IYN R+R A Sbjct: 63 NFRTTSTIPCDRLPLAVNTRLPEDIVVVKATEVHDGFNAIGSCIKKEYTYRIYNSRIRNA 122 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + + LD + M AA +G +DF + ++V + ++ R V + N+TR G + Sbjct: 123 FFVNRAWFYPKHLDEKVMQAAADRFVGTHDFAAVQSVGTEVQSTVRTVHYFNMTRSGDMI 182 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + AN F+++MVR +VG+ + P ++++L + RT A TA GLY+ + Sbjct: 183 ECRVCANGFLYNMVRAMVGTCVYAAEGKFPPEAVSDILEGRCRTAAGPTAPPGGLYMTKL 242 Query: 251 DYPD 254 Y + Sbjct: 243 WYEE 246 >UniRef50_C6J6C3 Pseudouridylate synthase n=2 Tax=Bacillales RepID=C6J6C3_9BACL Length = 261 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/256 (34%), Positives = 134/256 (52%), Gaps = 14/256 (5%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + + + YDG+ Y+G+Q Q +VQ+ +E A+ Q+ E + + +GRTDAGVH Q Sbjct: 3 NLLMTVSYDGTNYFGFQTQPGGNTVQDHIEGAIRQLTGETVKIHGSGRTDAGVHARQQPF 62 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF T + W L +NA LP DI V + VP FH+R SA + YRY I +R P Sbjct: 63 HFHTDSRIPVERWCLALNARLPSDIRVLTAREVPLTFHSRHSAKRKTYRYTINTNRF-PD 121 Query: 131 VLSKGVTHFYEP--LDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV----- 183 V + F+ P L+ + M + L+G +DFTSF + Q + R + + Sbjct: 122 VFQRNY-QFHHPGQLNVDAMQASLPYLVGTHDFTSFASRQSTKLSHVRTIYDARIVVDSL 180 Query: 184 -----TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAA 238 T V + + F+ HMVR IVG+L+E+G + I +L AKDRT A Sbjct: 181 AKIPGTTGQGIVHFYVTGSGFLQHMVRIIVGTLIEIGEGKRTPESIQAILEAKDRTAAGP 240 Query: 239 TAKAEGLYLVAVDYPD 254 TA+++GL L +V+Y + Sbjct: 241 TAESKGLMLWSVEYEE 256 >UniRef50_Q3A9U9 Pseudouridylate synthase n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3A9U9_CARHZ Length = 246 Score = 147 bits (372), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 91/255 (35%), Positives = 132/255 (51%), Gaps = 33/255 (12%) Query: 14 LGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHF 72 L I YDG+ + G+Q+Q N +++Q LE+ L ++ EP+ V AGRTDAGVH GQVV+F Sbjct: 9 LTIAYDGTNFAGFQKQKNTPQTIQGILEEKLHKILKEPVKVIGAGRTDAGVHALGQVVNF 68 Query: 73 ETTALRKDAAWTLGV-------NANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 A W V N LP I V + VPDDFHAR+SA + YRY +Y Sbjct: 69 -------SAPWKAPVDKIPEILNNTLPTAIRVLEAEIVPDDFHARYSARKKEYRYYLYYG 121 Query: 126 RLRPAVLSKGVTHFYE--------PLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRN 177 P FYE LD E++ +A + L+G +DF+ F A + P + Sbjct: 122 PPSP---------FYERYAWALPQKLDREKVAKALEYLIGTHDFSGFGAAGSSGKNPIKT 172 Query: 178 VMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAA 237 + + G A++F++ M R + G+L+E+G + PE + E+L ++ LA Sbjct: 173 MFEASYREDGFLGYFTFVADSFLYKMARILTGTLVEIGLNGHPER-VREILTTGNKKLAG 231 Query: 238 ATAKAEGLYLVAVDY 252 TA A GL+LV V Y Sbjct: 232 KTAPAHGLFLVKVFY 246 >UniRef50_Q4FNF9 tRNA pseudouridine synthase A n=5 Tax=Bacteria RepID=TRUA_PELUB Length = 246 Score = 147 bits (371), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 +++ + IEY G+ + GWQ Q++ +S+Q++++ LS+ E + + +GRTDAGVH Q Sbjct: 1 MFRYQVLIEYIGTNFVGWQIQSKGKSIQKEIQVKLSKFLKEKVVLIGSGRTDAGVHAIEQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGD--IAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 HF+ ++ L + D I+V +K FHAR SA R Y+YII+N Sbjct: 61 SAHFDCKKEIQNLDKLLKSINHFINDKGISVLAIKKRSLKFHARHSAKQRIYKYIIFNRL 120 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 +P++ + H + LD E M + ++ LLG DF++FRA C +++P + + +N+ Sbjct: 121 SKPSLEKERGWHIIKKLDIELMKKGSKKLLGTKDFSTFRASSCNAKSPIKTMKSVNIKSK 180 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 + + K+ +F+ VR++VGSL + + ++ +K R L A A AEGL+ Sbjct: 181 DGRIEIQFKSQSFLQQQVRSMVGSLKYLAENKWDLKKFEFVIKSKKRILCAPPAPAEGLF 240 Query: 247 LVAVDY 252 L V Y Sbjct: 241 LEKVIY 246 >UniRef50_B0SC03 tRNA pseudouridine synthase A n=2 Tax=Leptospira biflexa serovar Patoc RepID=TRUA_LEPBA Length = 264 Score = 147 bits (371), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 90/259 (34%), Positives = 137/259 (52%), Gaps = 8/259 (3%) Query: 13 ALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVA--NEPITVFCAGRTDAGVHGTGQVV 70 AL +EYDG+ + GWQ+Q + +VQ +E AL + N + AGRTD GVH G V Sbjct: 5 ALLVEYDGTHFNGWQKQKNLPTVQSSIESALGIILRRNPASRLSVAGRTDTGVHALGMVC 64 Query: 71 HFETT-ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 +F+T + + +NA P ++V+ V VP DFHARFS T R Y Y +Y + Sbjct: 65 NFKTEHPIPNFHKLLVSLNALTPTGVSVKNVVEVPSDFHARFSCTGREYIYKLYYSKYES 124 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSF-RAVQCQSRTPWRNVMHINVTRHGP 188 + + +D ER+ + Q L+GE DF SF +A + R ++ I + P Sbjct: 125 SFVEGRAFWVKGHIDWERVKKQLQVLVGEKDFRSFTKAKSMAGKRAVREILAIQLENLSP 184 Query: 189 -YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + + I+AN F+H+MVR VG+L+++G I +L K+RT A T +GLY Sbjct: 185 EWYQIRIRANGFMHNMVRITVGTLLDIGKGRWESRSIDSILEEKNRTQAGVTLPPDGLYF 244 Query: 248 VAV---DYPDRYDLPKPPM 263 V D+P+ ++L K P+ Sbjct: 245 VRAYYEDHPEIHELYKIPL 263 >UniRef50_C3JAB4 Pseudouridylate synthase (Fragment) n=2 Tax=Bacteria RepID=C3JAB4_9PORP Length = 264 Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 95/248 (38%), Positives = 131/248 (52%), Gaps = 14/248 (5%) Query: 14 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFE 73 L I +DGS Y GWQRQ +VQ+ +E+ALS + PI++ AGRTDAGV+ H + Sbjct: 6 LDIAFDGSSYCGWQRQPNGLAVQQVIEEALSLLFRTPISIVGAGRTDAGVNAYSLPAHVD 65 Query: 74 T--TALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 TA W +N LP +I +R ++ V HARF A +RRY Y I R Sbjct: 66 IPETAKGTPYRWRKSLNGILPHNINIRSIRPVQPSAHARFDAISRRYLYFIAEER---DP 122 Query: 132 LSKGVTHFYEPL-DAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 ++ P D E+M++AAQ LLG +DFTSF + + T N+ I P Sbjct: 123 FNRQWVLPVRPFPDIEKMNQAAQYLLGTHDFTSFSRLHTDTHT---NICTIQEAFWSPSS 179 Query: 191 V-----VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 I AN F+ +MVR IVG+L+EVGA I E++ A+DR A A+ + E L Sbjct: 180 YPSTWQFSITANRFLRNMVRAIVGTLLEVGASTLAPEDIIEIIRAQDRNRAGASVRGEAL 239 Query: 246 YLVAVDYP 253 +L V+YP Sbjct: 240 FLAHVEYP 247 >UniRef50_C2KS13 Pseudouridylate synthase n=2 Tax=Mobiluncus mulieris RepID=C2KS13_9ACTO Length = 326 Score = 147 bits (370), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 102/307 (33%), Positives = 143/307 (46%), Gaps = 68/307 (22%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +I I YDG ++GW RQ + +VQ LE AL+ + +P+T+ AGRTDAGVH TGQV Sbjct: 3 RIRFDIRYDGRPFHGWARQPGLPTVQGALETALTVLFRQPVTLTVAGRTDAGVHATGQVA 62 Query: 71 HFE---------------------------------------TTAL--RKDAAWTLGVNA 89 HF+ +T L R ++ L + Sbjct: 63 HFDLPDQFSGDWLRDAHDTEFAASLGAIVAASNPPGIANFQLSTGLHRRLESVLRLVTSG 122 Query: 90 NLP------------------GDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 N P G I V + VPD F ARFSA AR Y Y++ + Sbjct: 123 NTPTIPGLNLDDQPIYPPEANGAIVVTAARPVPDAFDARFSALARHYEYLVIDEPTARNP 182 Query: 132 LSKGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSR---TPWRNVMHINVTRHG 187 L++ +Y PL+ RMH A+ LLG +DF +F C+ R T R + + V+R Sbjct: 183 LTRNTCWWYGAPLNVARMHEASAGLLGTHDFAAF----CKPREGATTIRTLKQLGVSRLA 238 Query: 188 P-YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 P + D+ A+AF H MVR++VG+L EVG + W+ + L + R A A+GL Sbjct: 239 PGEIRFDVAADAFCHSMVRSLVGALTEVGRGKRDADWLEQALHSAVRIPEIPLAPAQGLT 298 Query: 247 LVAVDYP 253 LV VDYP Sbjct: 299 LVRVDYP 305 >UniRef50_B9KZV8 Pseudouridylate synthase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KZV8_THERP Length = 279 Score = 147 bits (370), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 100/266 (37%), Positives = 131/266 (49%), Gaps = 16/266 (6%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 Y++ G Y+G+ + G QRQ +R+VQ LE+AL+++A EP+ V AGRTDAGVH GQV Sbjct: 6 YRLDFG--YEGTAFSGSQRQPGLRTVQGVLEEALARLAGEPVRVALAGRTDAGVHAVGQV 63 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 F+ +A + A LP D+ V V +P FHAR A R YRY I+ P Sbjct: 64 ASFDLCWRHDEATLARALQAWLPEDVVVYRVARMPAGFHARRGAVDREYRYRIWQGEQPP 123 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSF--------RAVQCQSRTPWRNVMHI 181 L + V F LD M AAQ LG +DF SF +A + RT H+ Sbjct: 124 LFLRRFVWRFAGLLDLRAMQEAAQFFLGSHDFRSFAGHGLGGPKATTPRVRTITMAEWHL 183 Query: 182 ------NVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTL 235 V V ++AN F+ MVR +V +L+ VG SWI+ELL DR Sbjct: 184 LSPVVEPVGTGAQIVEFRVRANGFLPQMVRTMVSALVRVGTGAAEPSWISELLERCDRRA 243 Query: 236 AAATAKAEGLYLVAVDYPDRYDLPKP 261 A A GL L V YP+ L P Sbjct: 244 APPPAPPGGLVLWRVRYPEDIALATP 269 >UniRef50_C2BS51 Pseudouridylate synthase n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BS51_9ACTO Length = 297 Score = 146 bits (369), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 99/275 (36%), Positives = 139/275 (50%), Gaps = 36/275 (13%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +I L I YDG+ ++GW Q + +VQ LE AL+ + + + + AGRTDAGVH +GQV Sbjct: 2 RIRLDIRYDGTPFHGWAAQPGLPTVQGALESALTVIYRQTVELTVAGRTDAGVHASGQVA 61 Query: 71 HF------------ETTALRKDAAWTLGVNANLPGD---------------IAVRWVKTV 103 HF +T A R A ++ NL + V V Sbjct: 62 HFTVPEVGDRIVSPDTLAPRLGAVLRAVLSGNLASPLPDSPAAYPPNAIDALVVTAATVV 121 Query: 104 PDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEP-LDAERMHRAAQCLLGENDFT 162 P+ F ARFSA AR Y Y I + LS+ +Y LDA M+ +A LLGE+DF Sbjct: 122 PETFDARFSALARHYVYRIVDDLAARNPLSRNCCWWYPTQLDAAAMNTSAAVLLGEHDFA 181 Query: 163 SFRAVQCQSR---TPWRNVMHINVTRHGPYVV-VDIKANAFVHHMVRNIVGSLMEVGAHN 218 +F C+ R T R + + R P ++ + ++A+AF H MVR++VG+L EVG Sbjct: 182 AF----CKPREGATTIRTLQQLETLRTAPGMMEIRVRADAFCHSMVRSLVGALTEVGRAK 237 Query: 219 QPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYP 253 + +W+A+ LAAK R A A GL L VDYP Sbjct: 238 RDTAWLADALAAKARIPEIPVAPALGLTLTQVDYP 272 >UniRef50_C0GLA2 Pseudouridylate synthase n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GLA2_9DELT Length = 247 Score = 146 bits (368), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 90/244 (36%), Positives = 126/244 (51%), Gaps = 2/244 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++ L + YDG+ Y GWQ Q + ++Q +LEKALS++ + I V +GRTDAGVH GQV Sbjct: 4 RVRLTLAYDGTGYNGWQIQKDGLTIQGELEKALSRICSASIRVHGSGRTDAGVHALGQVA 63 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+ + W +NA LP I V FHARFSA A++Y Y ++ Sbjct: 64 HFDPPPKFLNVPWNRALNAVLPPGIRVLDFARTDRKFHARFSARAKQYSYTLWTQGAFFY 123 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT-RHGPY 189 + PLD E M A CL G +DF F + R V +I + P Sbjct: 124 PQRRNFVWNTGPLDLEAMQEATTCLTGSHDFNCFMNKGTEITDTIRTVRNILLAPGFTPQ 183 Query: 190 -VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 VV I+A+ F+ M RNIV +L++VG ++ + ++ +DR LA ATA A GL L Sbjct: 184 ETVVWIQADGFLKQMARNIVSALVQVGRKKLSQAELKSIIQGRDRALAPATAPARGLCLE 243 Query: 249 AVDY 252 V Y Sbjct: 244 HVTY 247 >UniRef50_A8SNL4 Pseudouridylate synthase n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SNL4_9FIRM Length = 247 Score = 146 bits (368), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 127/241 (52%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 I L I YDGS ++G+Q+Q V +VQ ++E AL ++ E I + AGRTD GVH +++ Sbjct: 4 IMLTISYDGSLFFGFQKQKNVVTVQGEIEDALKKITEENINIISAGRTDRGVHSLRHIIN 63 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 F T + + +N LP + V K V ++FH+RF A + Y+YI+ + + Sbjct: 64 FHTESNVGVLNFKTALNHFLPIGVRVLDSKEVSENFHSRFDAKMKTYKYILNLDEVMDPI 123 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVV 191 +F PLD E+M RA + +G F +F + + P R + + + ++ Sbjct: 124 YYNYKANFPYPLDIEKMKRAKEYFIGRKSFKAFMGPRTGNINPIREINSFEIYKENNDLI 183 Query: 192 VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVD 251 IK +F+ + VR +VG+L+++G E + +L ++DRT A T GLYL+ + Sbjct: 184 FLIKGQSFIRNQVRIMVGTLVDIGRGLIEEDELERILDSEDRTRAGVTLSPNGLYLMEIL 243 Query: 252 Y 252 Y Sbjct: 244 Y 244 >UniRef50_C0VZ39 Pseudouridylate synthase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VZ39_9ACTO Length = 302 Score = 146 bits (368), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 100/267 (37%), Positives = 142/267 (53%), Gaps = 28/267 (10%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + L Y G+ + GW +Q +R+VQ LE+AL+ V EP+ + AGRTDAGVH + Q Sbjct: 2 RFRLECAYRGTFFRGWAKQPGLRTVQGTLEEALALVLREPVELTVAGRTDAGVHASAQTA 61 Query: 71 HFETTALR-----KDA-------AWTLGVN-------ANLPG--DIAVRWVKTVPDDFHA 109 HF+ A R K A A T +N +N G D+ V ++ V D F A Sbjct: 62 HFDVCADRLMQVTKQAEVVHACEALTRRLNRLIRRADSNASGLPDVVVYSIEPVADVFDA 121 Query: 110 RFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQC 169 RF+A R Y Y + + R + ++ V EPL M AA+ L+GE+DF SF C Sbjct: 122 RFAALRRHYVYRVADVAGRNPLYAESVWWVEEPLQIHLMREAARALVGEHDFLSF----C 177 Query: 170 QSR---TPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAE 226 + R + R + +++ + V + A+AF H MVR+IVG+L+EVG +P +WIA+ Sbjct: 178 KPREGASTIRTLEAVDLVETDTGLEVRLSADAFCHSMVRSIVGALVEVGRGRKPVTWIAD 237 Query: 227 LLAAKDRTLAAATAKAEGLYLVAVDYP 253 L+A R AA A GL L AVDYP Sbjct: 238 LVAFPSREQAAPLAPPHGLTLRAVDYP 264 >UniRef50_Q63H59 tRNA pseudouridine synthase A 1 n=102 Tax=Bacillales RepID=TRUA1_BACCZ Length = 247 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 128/243 (52%), Gaps = 1/243 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQV-ANEPITVFCAGRTDAGVHGTGQV 69 +I + YDG + G+Q Q + R+VQ+++EKAL ++ E + V +GRTD+ VH GQV Sbjct: 3 RIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKGQV 62 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 +HF+T ++ W+ +N LP DI + V+ ++FHAR+ + YRY + + Sbjct: 63 IHFDTPLSLEEWQWSNALNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLVSKTAD 122 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 V + PL+ + +A +G +DFTSF + + + R + I + Sbjct: 123 VFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIEQDDE 182 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 ++ N F+++MVR IVG+L+ VG I E+LA ++R A A GLYL Sbjct: 183 LIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 242 Query: 250 VDY 252 V+Y Sbjct: 243 VNY 245 >UniRef50_C4GC36 Pseudouridylate synthase n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GC36_9FIRM Length = 325 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 97/293 (33%), Positives = 134/293 (45%), Gaps = 54/293 (18%) Query: 14 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVA------------NEPITVFCAGRTDA 61 L I YDG++Y GW+ Q ++Q KLE+AL+++ + P+ + AGRTDA Sbjct: 32 LKIAYDGTRYAGWEHQPGQETIQGKLEQALARMCGLAMDERDFMRPDTPVKLIGAGRTDA 91 Query: 62 GVHGTGQV--VHFETTALR-----------KDAAWTLG---------------------- 86 GVH G V + FE A R +D G Sbjct: 92 GVHARGMVASIAFEAPAYRPGPWERRESKGRDRGNQPGNMTWQAEPSAQLTRRNQPRSMT 151 Query: 87 -------VNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHF 139 +N LP DI+V K FHAR+ A + Y+Y ++ R++P + T Sbjct: 152 CQEMQDYLNHYLPDDISVVAFKEAAARFHARYKAVGKTYQYTAFDGRVKPVFNRRYYTPL 211 Query: 140 YEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAF 199 E LD M AA CLLGE+DF SF ++ R V I + R YV F Sbjct: 212 EEELDVSAMQEAANCLLGEHDFRSFCGNPKMKKSTVRRVDRIEIRRSKGYVYFSFHGTGF 271 Query: 200 VHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 + +MVR +VG+LMEVG H + ++L A+DR A TA A GL L+ VDY Sbjct: 272 LQNMVRILVGTLMEVGWHRMRPQDVEKILEARDRKAAGPTAPARGLCLIRVDY 324 >UniRef50_C2KUD3 Pseudouridylate synthase n=1 Tax=Oribacterium sinus F0268 RepID=C2KUD3_9FIRM Length = 265 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 81/259 (31%), Positives = 136/259 (52%), Gaps = 5/259 (1%) Query: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFC-AGRT 59 M+ +++ +I L + Y+G+ Y+G+Q+Q + ++ +E+ L + + F A RT Sbjct: 1 MNKRKEEMEQRIVLKLAYEGTSYHGFQKQEGLSTIAGTVEEQLRNLFPWKMENFIGASRT 60 Query: 60 DAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYR 119 D GVH G ++ F+T +N+ LP DI V +V DFH RF+ + YR Sbjct: 61 DQGVHALGNLLSFDTEGKVSGEQILRALNSYLPEDIRVMEAYSVQQDFHPRFTPHRKAYR 120 Query: 120 YIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSR----TPW 175 Y I ++ + + H+ PLD ++ + L GE+DF SF + QS + Sbjct: 121 YSICRSKVENPLRRRTAYHYTFPLDCGKISEGMELLKGEHDFRSFANPKAQSLLQGGSSV 180 Query: 176 RNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTL 235 R + ++ G Y+ ++ N F++HM+R + G+L+E+G S + E+L KDRTL Sbjct: 181 REIYRFSMEEEGDYLHFSVEGNGFLYHMIRILAGTLLELGRGRISLSQLEEILEKKDRTL 240 Query: 236 AAATAKAEGLYLVAVDYPD 254 A TA A+GL L+ +DY D Sbjct: 241 AGPTAPAKGLCLMNLDYGD 259 >UniRef50_D1BP31 Pseudouridylate synthase n=3 Tax=Veillonella RepID=D1BP31_VEIPT Length = 261 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/238 (34%), Positives = 127/238 (53%), Gaps = 2/238 (0%) Query: 12 IALGIEYDGSKYYGWQRQ--NEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 I + + YDG+ G+Q+Q ++ +VQ LE LS++ NEPI ++ A RTDAGVH QV Sbjct: 4 IQIIVAYDGTDLAGYQKQPNDKGLTVQGCLEYGLSRICNEPIQIYGASRTDAGVHAKFQV 63 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 F+T+ + A++P DI V +P D+ R++ + Y Y I+N + Sbjct: 64 CTFQTSGTIPVENIPRAMIAHIPKDIVVIEAIEIPLDWKPRWNIYGKEYVYTIHNQLIAD 123 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 + + H +PLD +RM A L+G +DFT+ + P + +M I V G Sbjct: 124 PLTQRYHWHVKKPLDIDRMQAAGNELVGTHDFTTLKGTNSTPADPVKTIMGIRVEARGSQ 183 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 V + + + F++HMVRNI G L++VG + I LAAKDR + TA A+GL L Sbjct: 184 VTISVVGDGFLYHMVRNIAGLLVDVGLGRRKVEDIKGYLAAKDRRVIGKTAPAQGLCL 241 >UniRef50_D2QH82 tRNA pseudouridine synthase A n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QH82_9SPHI Length = 252 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 90/249 (36%), Positives = 125/249 (50%), Gaps = 18/249 (7%) Query: 14 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFE 73 + + Y G+ Y+GWQ Q S+Q LE ALSQ +P+ + +GRTDAGVH Q HF+ Sbjct: 5 IELSYRGTAYHGWQTQANGISIQITLEAALSQRLGKPVYIMGSGRTDAGVHAKQQFAHFD 64 Query: 74 TTA-LRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVL 132 + L + +N LP DIA+ + V D HARFSA +R Y+Y I R + A Sbjct: 65 SEEPLDITESLIYSLNCMLPEDIAIHAIFPVSDKTHARFSAISRYYQYHI--TRQKDAFQ 122 Query: 133 SKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY--- 189 HF L+ +RM+ A LL +F SF + NV H + Y Sbjct: 123 GTLTYHFRPQLNVDRMNEACTLLLRHTNFQSFSKARA-------NVTHFHCQLEFAYWRY 175 Query: 190 -----VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 + IKAN F+ MVR IVG+++E+G +++ A+DR +A A A G Sbjct: 176 TNVDCLTFHIKANRFLWGMVRTIVGTMLEIGQERMSLEQFEKIILARDRKIAGRAAPANG 235 Query: 245 LYLVAVDYP 253 LYLV V YP Sbjct: 236 LYLVEVGYP 244 >UniRef50_A9KLD6 Pseudouridylate synthase n=2 Tax=Clostridium RepID=A9KLD6_CLOPH Length = 248 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 135/245 (55%), Gaps = 5/245 (2%) Query: 12 IALGIEYDGSKYYGWQRQ---NEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 I L IEYDGS+Y GWQ+Q + ++Q+KLE L+++ NE +TV A RT+AGVH Q Sbjct: 4 IQLIIEYDGSRYDGWQKQAGNQKSITIQDKLEDVLNKMENETVTVIGAARTEAGVHAYKQ 63 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V F T + K +N LP DIAV VP+ FHA F+A + Y Y I + Sbjct: 64 VASFMTNSKLKVYEIKQYLNRFLPRDIAVLEALEVPERFHASFNAGSFEYEYKISIGEV- 122 Query: 129 PAVLSKGVTHF-YEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 P+V + ++ ++ D +M AA+ L+G++DF +F + ++ R + + + Sbjct: 123 PSVFERKYNYYCFKRPDIAKMKEAAKYLVGKHDFKAFSDNKRMKKSTEREIYSLEIYGDE 182 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 +V+ + + F HMVR +VG+L++VG I +L +KDR A T +A+GL+L Sbjct: 183 KEIVITVHGDDFWPHMVRIMVGTLLDVGLSKIEPMDIKRILESKDRDKAGETIEAKGLFL 242 Query: 248 VAVDY 252 V Y Sbjct: 243 TEVHY 247 >UniRef50_C4XPZ9 tRNA pseudouridine synthase A n=4 Tax=Desulfovibrio RepID=TRUA_DESMR Length = 274 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 99/272 (36%), Positives = 135/272 (49%), Gaps = 21/272 (7%) Query: 11 KIALGIEYDGSKYYGWQRQ--NEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 ++ L + YDG+ + GWQ Q R+VQ LE+AL+ + +P+ V AGRTD+GVH Q Sbjct: 3 RLRLTLAYDGTDFAGWQIQAAGGGRTVQGCLEEALATLCGQPVRVHGAGRTDSGVHALAQ 62 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIY---NH 125 V H + R W + A LP D+AV + V DFH+RF AT + YRY ++ H Sbjct: 63 VAHADVPEHRAGLPWGKALTALLPKDVAVTEARLVAPDFHSRFDATGKEYRYTLWTRPGH 122 Query: 126 RL---RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHIN 182 L RP V G Y LD M A +GE+DF +F+ + R V ++ Sbjct: 123 VLPWRRPYVWDVG---RYGTLDVAAMEACAGLFVGEHDFAAFQNAGTDVHSTVRRVWDVS 179 Query: 183 -VTRHGP-YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATA 240 + GP V F+ MVRN++G+L+ VG +A LLAA DR A TA Sbjct: 180 RLAGTGPDETVWRFHGEGFLKQMVRNLMGALVAVGRGKATAEDVATLLAAGDRRRAPGTA 239 Query: 241 KAEGLYLVAVDY--------PDRYDLPKPPMG 264 A+GL L AV+Y P D P P G Sbjct: 240 PAQGLCLHAVEYGAPGVAGLPGLGDKPAEPAG 271 >UniRef50_A7HKV8 tRNA pseudouridine synthase A n=11 Tax=Thermotogaceae RepID=TRUA_FERNB Length = 246 Score = 144 bits (363), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 86/242 (35%), Positives = 133/242 (54%), Gaps = 2/242 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++A+ YDG+ ++G+Q QN VR+VQ +LEKAL +V I + AGRTD GVH GQVV Sbjct: 3 RVAIEFSYDGTDFFGYQIQNNVRTVQGELEKALEKVFKIHIDTYAAGRTDTGVHANGQVV 62 Query: 71 HFETTALR-KDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 F+ R + +NANLPGDI ++ V F+ R+ A R Y Y I + + Sbjct: 63 SFDCPNDRLMENDIKNAINANLPGDIYIKKVWFTHPTFNPRYEAKRRIYHYYIDTSKSKN 122 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR-HGP 188 + V F LD E+M AA+ L+GE+DF SF ++ R + ++ + Sbjct: 123 LFTRRYVWWFPYELDIEKMRIAAKYLIGEHDFISFSKKGEENTKTIRTINNLRIIEIKNG 182 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 +++ ++ +F+ MVR+IV +L+ VG + E+L +KDR+ +A A A GL+L Sbjct: 183 LILIRVEGISFLRGMVRSIVANLVRVGTGIWEPEKVKEVLESKDRSKSAGLAPAHGLFLY 242 Query: 249 AV 250 V Sbjct: 243 KV 244 >UniRef50_C5CGS8 tRNA pseudouridine synthase A n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=TRUA_KOSOT Length = 250 Score = 144 bits (363), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 93/251 (37%), Positives = 132/251 (52%), Gaps = 13/251 (5%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + A + YDGS ++G+Q Q R+VQ E+AL ++ I AGRTD GVH GQV+ Sbjct: 3 RFAAVVVYDGSNFFGYQIQPNKRTVQGVFEEALERIHKAKIPTDGAGRTDTGVHAYGQVI 62 Query: 71 HFETTALR------KDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYN 124 F + R KDA +NANLP DI VR + VP +F RF+A R Y Y I N Sbjct: 63 AFTSNLDRLTPKHMKDA-----LNANLPDDIYVRRIHEVPSNFSPRFAAKKRIYHYYILN 117 Query: 125 HRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT 184 + K F +D RM +A++ L+GE+DFTSFR R+ R + I + Sbjct: 118 TKEPDLFRRKYFWWFPYEVDLNRMRQASRYLIGEHDFTSFRTGH-DDRSTIRTITGIRIL 176 Query: 185 R-HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 R +++ ++ +F+ MVRNIVG LM VG E+L A+DR+ ++A A Sbjct: 177 RLQKNIILIRVEGISFLRRMVRNIVGLLMRVGTGGIEPKKTKEILEARDRSKLPSSAPAH 236 Query: 244 GLYLVAVDYPD 254 GL L V + + Sbjct: 237 GLVLHKVIFDE 247 >UniRef50_C9LN87 Pseudouridylate synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LN87_9FIRM Length = 265 Score = 144 bits (363), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 82/241 (34%), Positives = 121/241 (50%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 I + + Y+G+ Y G+QRQ +VQE LE AL ++ T++ A RTDAGVH GQ Sbjct: 4 IRITLAYEGTAYSGFQRQENSITVQEILETALQKLTGTKTTLYFAARTDAGVHAYGQECT 63 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 F T + + +N LP DI V + VP DF R + + Y Y++ + P Sbjct: 64 FYTESSIPGDRFIFALNILLPPDIRVTESREVPYDFSVRRNNYGKTYGYLLTEEKDCPPF 123 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVV 191 + LD +M +AA+ L G +DFTSFR +P R + I + + + Sbjct: 124 FKRYTWQTGRKLDISKMEKAAEVLSGTHDFTSFRGNNSVPASPVRTIHDIRIIKKHHFFH 183 Query: 192 VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVD 251 + + F++HMVRNI G+L + G + E+L AKDR ATA A GL L+ V Sbjct: 184 IFVTGEGFLYHMVRNIAGALADAGTGKLTPKDLREILEAKDRKFLGATAPAHGLCLLKVY 243 Query: 252 Y 252 + Sbjct: 244 F 244 >UniRef50_Q89ZY4 tRNA pseudouridine synthase A n=12 Tax=Bacteroidetes RepID=TRUA_BACTN Length = 269 Score = 144 bits (362), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 93/248 (37%), Positives = 128/248 (51%), Gaps = 17/248 (6%) Query: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 + YDG+ Y+GWQ Q SVQE L KALS + V AGRTDAGVH + V HF+ Sbjct: 8 LAYDGTNYHGWQIQPNGSSVQECLMKALSTFLRRDVEVIGAGRTDAGVHASLMVAHFDHE 67 Query: 76 ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYII------YNHRLRP 129 + +N LP DI+V V+ V D HARF ATAR Y+Y + +N + R Sbjct: 68 DVLDTVTVADKLNRLLPPDISVYRVRQVKPDAHARFDATARTYKYYVTTAKYPFNRQYRY 127 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR---H 186 V Y LD ERM+ AA+ L DFTSF + +T ++ H T+ Sbjct: 128 RV--------YGSLDYERMNEAARTLFEYIDFTSFSKLHTDVKTNICHISHAEWTKMEGE 179 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 V I+A+ F+ +MVR IVG+L+EVG +++ +DR A +A L+ Sbjct: 180 DTTWVFTIRADRFLRNMVRAIVGTLLEVGRGKLTVEGFRKVIEQQDRCKAGTSAPGNALF 239 Query: 247 LVAVDYPD 254 LV V+YP+ Sbjct: 240 LVNVEYPE 247 >UniRef50_B2A4Q5 tRNA pseudouridine synthase A n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=TRUA_NATTJ Length = 253 Score = 143 bits (361), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 88/250 (35%), Positives = 130/250 (52%), Gaps = 8/250 (3%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANE-PITVFCAGRTDAGVHGTGQVV 70 I L I YDGS Y+G+Q Q +VQEKLEKAL+ V IT + A RTD+GVH GQV Sbjct: 4 IKLTIAYDGSNYHGYQLQENAVTVQEKLEKALNTVYYPYKITPYSASRTDSGVHAKGQVA 63 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 +F L +N NLP DIA+ + V +F AR A + YRY +Y+ Sbjct: 64 NFFAPKQIPIHKIPLALNTNLPNDIAIINAEVVGSNFRARRDAIKKEYRYYVYHAPYMDP 123 Query: 131 VLSKGVTHFYEP-LDAERMHRAAQCLLGENDFTSFRAVQCQ--SRTPWRNV----MHINV 183 H+ E LD ++ +AA +G++DF+ FRA+Q S P + + + +N Sbjct: 124 FWRNYALHYREQNLDYTKLQQAANDFIGKHDFSPFRAIQGSNPSIDPVKEIYEFDIDVNA 183 Query: 184 TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 G ++ + NAF++ MVR +VG+L+++G + + + L DR TA + Sbjct: 184 GEDGNLIIFKVIGNAFLYKMVRILVGTLLQIGNGKLEINAVKKALQTGDRLFVGPTASPQ 243 Query: 244 GLYLVAVDYP 253 GL L + YP Sbjct: 244 GLVLQQIWYP 253 >UniRef50_Q6MEE7 tRNA pseudouridine synthase A 1 n=2 Tax=Parachlamydiaceae RepID=TRUA1_PARUW Length = 256 Score = 143 bits (360), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 80/245 (32%), Positives = 134/245 (54%), Gaps = 4/245 (1%) Query: 14 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALS-QVANEPITVFCAGRTDAGVHGTGQVVHF 72 L I YDG+ Y GWQ Q S+Q+K+++AL + E + + +GRTDAGVH GQV HF Sbjct: 6 LTIAYDGTNYSGWQIQPNASSIQQKIQEALCILLKKEKVVLVGSGRTDAGVHAKGQVAHF 65 Query: 73 ETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVL 132 + + +N LP DI ++ V+ V FH+++SA + Y Y ++ +++ Sbjct: 66 HFQDYIDLSRLHVSLNGLLPRDIRIKAVEPVSPRFHSQYSAIRKEYHYYLHLNKVMDPFQ 125 Query: 133 SKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQ---CQSRTPWRNVMHINVTRHGPY 189 HF +D + +AA G +DFTSF ++ P R + +++ + Sbjct: 126 RLYSWHFQRKIDVNILKKAAILFTGTHDFTSFANEAHRGTAAKNPVRTLYRLDIKPNEGG 185 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 + ++ + + F++ MVRNIVG+LM+V +H + I ++ AAK+R A+ A EGL+L+ Sbjct: 186 LRLEFEGDGFLYKMVRNIVGTLMDVASHKRAIEEINQIFAAKNRRQASLAAPPEGLFLIQ 245 Query: 250 VDYPD 254 V Y + Sbjct: 246 VFYEN 250 >UniRef50_C2MC62 Pseudouridylate synthase n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MC62_9PORP Length = 262 Score = 142 bits (359), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 97/270 (35%), Positives = 133/270 (49%), Gaps = 38/270 (14%) Query: 6 QPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHG 65 + P+ ++ L + YDG+ Y GWQ Q SVQ +LE+ALS + +PI+V AGRTDAGVH Sbjct: 2 EAPIQRVFLEVAYDGTNYCGWQVQPRGVSVQSELERALSMLFRQPISVTGAGRTDAGVHA 61 Query: 66 TGQVVHFETTALRKDAAWTL-GVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYII-- 122 + H + A G+ L G I+VR V V HARF AT+RRY Y I Sbjct: 62 YSMMAHADLPIPHPPLAQIQRGLCGILRGGISVRSVTPVIPTAHARFDATSRRYHYYISA 121 Query: 123 ----------YNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSR 172 + R P D E M+ A + +GE+DFTSF + Q++ Sbjct: 122 CSNPFWGDYCWERRTLP--------------DMELMNEACRHFIGEHDFTSFSKLHTQTK 167 Query: 173 --------TPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWI 224 W V + Y ++ AN F+H MVR +VG+L+EVG + I Sbjct: 168 HNRCTVYTAHWEQVEMPGLWDAMRY---EVCANRFLHGMVRTMVGTLLEVGYGQRTPDSI 224 Query: 225 AELLAAKDRTLAAATAKAEGLYLVAVDYPD 254 AEL+ +DRTLA + A A L+ V YPD Sbjct: 225 AELIQREDRTLAGSAAPARALFFVEATYPD 254 >UniRef50_B9XDA1 Pseudouridylate synthase n=1 Tax=bacterium Ellin514 RepID=B9XDA1_9BACT Length = 270 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 84/255 (32%), Positives = 129/255 (50%), Gaps = 4/255 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 K L I YDG Y GWQ Q VQ+++E+AL+++ + + RTD GVH G V Sbjct: 5 KFKLTIAYDGKNYSGWQVQKSGIGVQQRVEEALTKLFPSVGRIHSSSRTDTGVHAIGMVA 64 Query: 71 HFETTALR---KDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 H E L +NA+LP DI V + V DFHARF A ++YRY ++N Sbjct: 65 HMEIPKAEFRMTSEKLALAINAHLPEDIRVMSAQKVAADFHARFDAAGKQYRYFVWNQTA 124 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQC-QSRTPWRNVMHINVTRH 186 +L + + LD + M AA+ G++DF SF A + + + R + ++ + Sbjct: 125 MNPLLREQAWQVPKELDLKAMRSAAKLFPGKHDFRSFAASRNYEVESTVRTLARCDIKKS 184 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G + I+ + F++ M R IVG+L++VG + I ++L +DR +A TA A GL Sbjct: 185 GSLLTFIIEGDGFLYKMCRGIVGTLVQVGQGKIAAADIKKILETRDRRVAGMTAPAHGLV 244 Query: 247 LVAVDYPDRYDLPKP 261 L V Y + + P Sbjct: 245 LWKVFYKSKAKVSVP 259 >UniRef50_Q28LN3 tRNA pseudouridine synthase A n=16 Tax=Rhodobacterales RepID=TRUA_JANSC Length = 261 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 93/250 (37%), Positives = 131/250 (52%), Gaps = 11/250 (4%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + A IEYDG + GWQRQ ++ SVQ +E AL+++ + T+ AGRTD GVH GQV Sbjct: 3 RYAFRIEYDGHPFKGWQRQTDLPSVQGAVEAALAKLEADVPTIAAAGRTDTGVHALGQVA 62 Query: 71 HFETTALRKDAAWTLGVNANL-PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 H + +N +L P +A+ DDFHARFSAT R Y Y + R P Sbjct: 63 HADMQRDWDPFRLAEALNYHLKPAPVAITACARAHDDFHARFSATWRSYTYRMICRRA-P 121 Query: 130 AVLSKGVTHFYE---PLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR- 185 V ++G H + LD M A+ L+G++DFT+FRA CQ+ +P + + I V Sbjct: 122 LVHARG--HAWAVRGTLDVTAMAEGARHLIGKHDFTTFRATHCQALSPIKTMDEIRVEEV 179 Query: 186 ---HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 G + +KA +F+H+ VR+IVGSL VG+ + L A DR A Sbjct: 180 SLPAGTEIRFHLKAQSFLHNQVRSIVGSLEHVGSGAWAPDDMRRALEACDRAECGTVAPP 239 Query: 243 EGLYLVAVDY 252 +GLY+ V Y Sbjct: 240 DGLYMTGVGY 249 >UniRef50_D1B5U1 Pseudouridylate synthase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B5U1_THEAS Length = 251 Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 86/244 (35%), Positives = 125/244 (51%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 +++ A + Y GS + G+QRQ + +VQ LE++LS +A E +T AGRTDAGVH GQ Sbjct: 1 MFRYAAQVSYVGSCFAGFQRQPNLVTVQGALEESLSALAGEGVTCTGAGRTDAGVHARGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 VVHF+ + L + A LP + V + VP DFHARF A R YRY+++N R Sbjct: 61 VVHFDMPSRWDLERLRLAIRARLPRGLEVIRLAEVPGDFHARFDARWREYRYLVWNARWC 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + V LD + A LG DF +F + R +M +V R G Sbjct: 121 YPHMEPYVWPVRRHLDLGVLRELAGMCLGRRDFGAFCRSADRPDDSVRTMMRCSVRRFGH 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 +V +A+ F+ +M+R +VG+++EV A A LL R+ A T +GL+ Sbjct: 181 LLVFTFRADGFLTNMIRILVGTMLEVEAGRMSRERFASLLEGGHRSRAGRTCPPQGLFFW 240 Query: 249 AVDY 252 V Y Sbjct: 241 RVGY 244 >UniRef50_B0VGH4 Pseudouridylate synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGH4_9BACT Length = 274 Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 128/246 (52%), Gaps = 6/246 (2%) Query: 14 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFE 73 + I YDG+ Y GWQ+Q ++QE +EK L A + ++ AGRTDAGVH GQ HF+ Sbjct: 8 IKICYDGTGYCGWQKQKNGLAIQEVMEKMLEIFAGKKTSLIAAGRTDAGVHSLGQYAHFD 67 Query: 74 TTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 + ++ L N LP I V + V +AR+ A R YRY + + + Sbjct: 68 YSGSMQEKQLFLAFNRYLPDSIKVLEIMKVSPCLNARYQAYERSYRYRLAKEK---TPFN 124 Query: 134 KGVTHFYE--PLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVV 191 + + F+ L+ E+M A Q LLG++DF++F + + HI+++ Y V Sbjct: 125 RNYSGFFPHLHLNLEKMQSAVQYLLGKHDFSTFGKSNPEVPNRICELKHISISETERYFV 184 Query: 192 VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAK-DRTLAAATAKAEGLYLVAV 250 D A+ F+H+MVR IVG+L + + P + E+L + R TA A GLYL+ V Sbjct: 185 FDFTADRFLHNMVRRIVGTLANISHLHLPPETVLEILENRCPRQNLVITAPASGLYLMDV 244 Query: 251 DYPDRY 256 YP ++ Sbjct: 245 KYPAKF 250 >UniRef50_Q03PY8 tRNA pseudouridine synthase A n=21 Tax=Lactobacillales RepID=TRUA_LACBA Length = 265 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 88/250 (35%), Positives = 135/250 (54%), Gaps = 11/250 (4%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEP---ITVFCAGRTDAGVHGT 66 YK+ L YDG+ + G+QRQ R+V+ L ++++A +P I ++ +GRTDAGVH Sbjct: 4 YKVTL--MYDGTNFAGFQRQPNKRTVESTLTDVVNKMAKQPDPAIVIYGSGRTDAGVHAL 61 Query: 67 GQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 QVVHF+ L G+N+ LP D+ V V+ V FHAR+ + ++Y+Y + Sbjct: 62 AQVVHFDFPFLIPADNMRKGLNSMLPMDMEVLKVEEVAPTFHARYDVSGKQYQYRMDMGE 121 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNV----MHIN 182 R H+ P+D +++ A L+GE+D+TSF A Q+RT R + HI+ Sbjct: 122 FRNPFKRNYTGHWKFPVDLAKINVALADLVGEHDYTSFVASGAQTRTFVRTIYEATCHID 181 Query: 183 VTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 H +V + N F+++ VR +VG L+E+G+ +P + L KDR A T A Sbjct: 182 EANHE--LVFEFYGNGFMYNQVRIMVGVLVEIGSGTRPVHDVLRLYEVKDRKQARRTVPA 239 Query: 243 EGLYLVAVDY 252 GLYL V Y Sbjct: 240 AGLYLKHVYY 249 >UniRef50_C5RHY1 Pseudouridylate synthase n=1 Tax=Clostridium cellulovorans 743B RepID=C5RHY1_CLOCL Length = 245 Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 82/243 (33%), Positives = 130/243 (53%), Gaps = 7/243 (2%) Query: 14 LGIEYDGSKYYGWQRQNEV-RSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHF 72 L I+YDG Y GWQ+ ++ +++Q KLEK LS + +E + V +GRTDAGVH Q+ +F Sbjct: 6 LTIQYDGKNYRGWQKLSDSDKTIQSKLEKVLSTLVDEEVNVIGSGRTDAGVHARKQIANF 65 Query: 73 ETTALRKDAAWTLGVN---ANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 T KD W + LP DI V+ V + FHAR++A + Y Y I N Sbjct: 66 HT---EKDLKWKDVLKHCYTYLPEDIVVKSCDKVDEKFHARYNAKKKIYTYRICNSAFGD 122 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 A K + L+ ++M A++ +G +DF SF +++ + ++ R + I++ G Sbjct: 123 AFERKYSYLVDKKLNIDKMLAASKYFIGIHDFKSFTSMKSKKKSTVREIYDISINCIGDM 182 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 V + F+H+M+R + G+L+EVG I ++ +R+ A TA A GL+LV Sbjct: 183 VEITYIGEGFLHNMIRILTGTLIEVGLGKMKIDEIPTIMDGLERSDAGFTAPAHGLFLVD 242 Query: 250 VDY 252 V Y Sbjct: 243 VIY 245 >UniRef50_D1PV12 Pseudouridylate synthase n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PV12_9BACT Length = 244 Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 88/238 (36%), Positives = 126/238 (52%), Gaps = 3/238 (1%) Query: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 I +DG+ Y+GWQ Q SVQEKL++ L+ + +PI V AGRTDAGVH HF+ Sbjct: 7 ISFDGTAYHGWQIQPNGMSVQEKLQQGLTTLLRQPIEVTGAGRTDAGVHARRMAAHFDID 66 Query: 76 ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKG 135 +N LP DI+ V V D+ HARFSAT R YRY I+ R P Sbjct: 67 RELNCEQLAYRLNRILPRDISCEKVVRVNDEMHARFSATKRTYRYFIHTQR-NPFERFFS 125 Query: 136 VTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV-VVDI 194 V ++ LD E+M++AA LL +DF +F ++T V + GP +I Sbjct: 126 VEMNWQ-LDFEQMNQAAAILLETDDFKAFCKAHADNKTTLCKVTTARWVQTGPATYYFEI 184 Query: 195 KANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 AN F+ +MVR +VG+L++VG HN +E++ R+ A + GL+L ++Y Sbjct: 185 SANRFLRNMVRAVVGTLIDVGRHNITLQQFSEIVEKGSRSDAGQSMPPHGLFLWDIEY 242 >UniRef50_Q250I7 Pseudouridylate synthase n=2 Tax=Desulfitobacterium hafniense RepID=Q250I7_DESHY Length = 271 Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/260 (35%), Positives = 140/260 (53%), Gaps = 8/260 (3%) Query: 12 IALGIEYDGSKYYGWQRQNEVR--SVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 I L + YDG+ Y+G+QRQ E ++Q LE +++ E +T+ AGRTD GVH GQV Sbjct: 7 ICLKVAYDGTYYHGFQRQPEFHGPTIQGTLEAVWAKLVEEEVTLNTAGRTDTGVHAAGQV 66 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 V+F T A N+ LP DI + + ++FHARFSA +RY Y I NH + Sbjct: 67 VNFRTGARIPVDKIPKAFNSLLPRDIRILAAQEAAENFHARFSAKWKRYDYRIDNHPV-- 124 Query: 130 AVLSKGVTHFYEP--LDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 A + + +EP LD +RM + AQ L+G ++F +F A S+T R + V + Sbjct: 125 ADVFTRLYSLHEPVRLDWQRMQQGAQYLVGRHNFKAFSAAGGTSKTFERTLYLCQVAENQ 184 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 ++ + + F+++MVR I G+L+ VG + I ++LA+ DR TA +GL L Sbjct: 185 GHLRITCIGDGFLYNMVRIIAGTLVYVGKNRIQPGEIPDILASLDRKRGGVTATPQGLTL 244 Query: 248 VAVDYPDRYDLPKPPMGPLF 267 V Y + +LP+ LF Sbjct: 245 SYVHYGE--ELPRDIFPELF 262 >UniRef50_Q9RS37 tRNA pseudouridine synthase A n=3 Tax=Deinococcus RepID=TRUA_DEIRA Length = 280 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 86/250 (34%), Positives = 129/250 (51%), Gaps = 6/250 (2%) Query: 7 PPVY-KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANE-PITVFCAGRTDAGVH 64 PP + ++ L + +DG Y GWQ Q SVQE L+ AL + E + AGRTDAGVH Sbjct: 12 PPGFTRLRLTVAWDGRDYAGWQEQRNAVSVQETLQTALHALGGEGALRPVSAGRTDAGVH 71 Query: 65 GTGQVVHFETTALRKDAAWTL--GVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYII 122 +H++ + L +NA LP ++V + P FHARFS T RRY Y + Sbjct: 72 AEAMPLHWDVPTTFRVPLVQLPRALNAWLPASVSVLSAEVAPAGFHARFSCTERRYVYRL 131 Query: 123 YNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHIN 182 + R + + H PLDAE M+RAAQ L+G +DF +F + R R+++ + Sbjct: 132 WVAPQRHPLWAGRALHVPGPLDAEAMNRAAQSLIGLHDFAAF--ATREDRQTVRDLLRLE 189 Query: 183 VTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 V G + + +F+ HMVR +VG+L+ VG + + +LA+++R A A Sbjct: 190 VQPQGELWDIHVAGESFLRHMVRGLVGTLLLVGQGKLGAAEVEGILASRERARAGANVPP 249 Query: 243 EGLYLVAVDY 252 GLY +Y Sbjct: 250 GGLYFAGAEY 259 >UniRef50_A1A6J3 Pseudouridylate synthase n=14 Tax=Magnoliophyta RepID=A1A6J3_ARATH Length = 323 Score = 140 bits (353), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 90/264 (34%), Positives = 136/264 (51%), Gaps = 17/264 (6%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN---EPITVFCAGRTDAGVHGT 66 YK L I YDG+++ GWQ Q ++Q LEKAL Q+ + + + AGRTDAGVH Sbjct: 41 YKWRLVIAYDGTRFAGWQYQESPPTIQSMLEKALIQITELGRKELQLIGAGRTDAGVHAW 100 Query: 67 GQVVHFET----TALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYII 122 GQV HF T T+L ++ +N LP DI VR + +FHARFSA+++ YRY I Sbjct: 101 GQVAHFVTPFNYTSLD---SFHAALNGLLPKDIRVRELSAAVPEFHARFSASSKVYRYQI 157 Query: 123 YNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRT--PWRNVMH 180 YN H L+A +M AA +G++DF++F + P + + Sbjct: 158 YNDTFMDPFQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISR 217 Query: 181 INVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAA-- 238 +V + G + ++++ + F++ VRN+V L+++G + +L KDR + A Sbjct: 218 FDVIQMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYT 277 Query: 239 --TAKAEGLYLVAVDYP-DRYDLP 259 A GL LV+V Y D LP Sbjct: 278 SLPASPHGLCLVSVKYKEDHLKLP 301 >UniRef50_A8W1A9 Pseudouridylate synthase n=2 Tax=Bacillus RepID=A8W1A9_9BACI Length = 261 Score = 140 bits (352), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 82/245 (33%), Positives = 128/245 (52%), Gaps = 5/245 (2%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALS---QVANEPITVFCAGRTDAGVHGTG 67 ++ + IEYDGS + G+Q+Q R+VQ +LE+ALS + + P T +GRTD GVHG Sbjct: 3 RMLIRIEYDGSGFNGYQKQPNARTVQGELERALSVMHKAESWPCT--SSGRTDTGVHGVR 60 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 Q VHF++ D W + +N+ LP DI V V FHAR+ + YRY + + Sbjct: 61 QPVHFDSPLTIPDERWPMALNSLLPDDIQVLGAMEVDASFHARYDTVGKVYRYRVDTAKR 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + HF +D E M AA+ L G +DFTS + + + R + +++ Sbjct: 121 QTVFRRSFAAHFPGNMDIEAMREAAKHLEGTHDFTSLSSPKTDVKDKVRTLFAVSLEERE 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 V + F++ MVR ++G+L++VG+ + P I ++ ++R A TA GLYL Sbjct: 181 DGFDVVFAGSGFLYQMVRILMGTLIKVGSGDWPPDVIPAIIEKQERQAAGPTAPGHGLYL 240 Query: 248 VAVDY 252 V Y Sbjct: 241 EDVFY 245 >UniRef50_A9KR47 Pseudouridylate synthase n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KR47_CLOPH Length = 264 Score = 140 bits (352), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 123/250 (49%), Gaps = 9/250 (3%) Query: 12 IALGIEYDGSKYYGWQR----QNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 I L I YDG+ Y GWQR N S+Q LE+ LS+V EPI + +GRTD GVH G Sbjct: 11 IKLIISYDGTNYSGWQRIPKAANGDHSIQGLLEEFLSKVLLEPIKLIGSGRTDTGVHALG 70 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QV +F + + +N LP DI + V +FH+RF A + Y+YII Sbjct: 71 QVANFYSRSNLDVNIIRQKMNQVLPEDIKILQANEVDLNFHSRFDAVEKIYQYIIDTKER 130 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV---- 183 K + LD E M +AA+ L+G D+ SF + ++ R + I + Sbjct: 131 ESVFFRKYSYSCGKDLDIEAMRQAAKLLIGTMDYKSFCTDRKDGKSTIRTISEITIEELR 190 Query: 184 -TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 R+ ++ + N F+HHM+R I G+L+EVG + + + + K R A T Sbjct: 191 QNRNQQGIIFTFRGNGFLHHMIRIISGTLLEVGTQERSVESVRQAILGKKREYAGITLYP 250 Query: 243 EGLYLVAVDY 252 +GL+L V Y Sbjct: 251 QGLFLKQVIY 260 >UniRef50_Q2JFE6 tRNA pseudouridine synthase A n=44 Tax=Actinomycetales RepID=TRUA_FRASC Length = 274 Score = 140 bits (352), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 100/255 (39%), Positives = 135/255 (52%), Gaps = 18/255 (7%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEP-ITVFCAGRTDAGVHGTG 67 + ++ L + YDG+ + GW RQ R+VQ +E AL +VA P + + AGRTD+GVH G Sbjct: 5 LVRLRLDLSYDGTPFAGWARQPGQRTVQGDVEDALMRVARLPAVRLTVAGRTDSGVHAVG 64 Query: 68 QVVHFETTALRKDAAWTLGVNANLPG--DIAVRWV--KTVPDDFHARFSATARRYRYIIY 123 QV H + D G+ L G D AVR + P F ARFSA +RRY Y I Sbjct: 65 QVAHVDL----PDDVPLGGLARRLNGVLDRAVRIIGLAPAPPGFDARFSALSRRYVYRIT 120 Query: 124 NHRLRPAVLSKGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSR---TPWRNVM 179 + L + T + PLD M AA L+GE+DF +F C+ R T R ++ Sbjct: 121 DAPYGAEPLRRFDTLAWPRPLDVPAMAAAALFLVGEHDFAAF----CRRREGATTVRTLL 176 Query: 180 HINVTRHGPYVVV-DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAA 238 ++V R VVV D++A+AF H MVR +VG+L+ VG +P W A +L R A Sbjct: 177 RLDVLRRPEGVVVADVEADAFCHSMVRALVGALLAVGEGRKPPQWPAAVLHRGVRDPAVT 236 Query: 239 TAKAEGLYLVAVDYP 253 A A GL LV V YP Sbjct: 237 VAPAHGLTLVDVRYP 251 >UniRef50_D1C2N5 Pseudouridylate synthase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C2N5_SPHTD Length = 271 Score = 140 bits (352), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 96/264 (36%), Positives = 128/264 (48%), Gaps = 21/264 (7%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 +++ LG YDGS ++G QRQ VR+VQ LE A ++A EP V AGRTD GVH GQV Sbjct: 10 FRVDLG--YDGSAFFGSQRQPGVRTVQGALESAAERLAGEPTRVALAGRTDRGVHAVGQV 67 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 R + A P D+ V + V + FHARFSA R YRY ++ + P Sbjct: 68 ASLRIRWARSADELARALMALTPDDLVVYGAREVDERFHARFSARWREYRYFVWEGPV-P 126 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 ++ V PL+ M+ AA +G DF + PW + + Sbjct: 127 TLMRGRVWVVRTPLNLAAMNAAADAFIGRRDFAA--VAGAGVGVPWSGIDTTRTVSLARW 184 Query: 190 VVVD----------------IKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDR 233 +VD I+A+ F+ HMVRNIVGSL+ VG ++P W ELLA +DR Sbjct: 185 RIVDQPFERHDRSGRLLEFRIRADGFLPHMVRNIVGSLVAVGRGDRPIGWTEELLAGRDR 244 Query: 234 TLAAATAKAEGLYLVAVDYPDRYD 257 A A A+GL L V Y D D Sbjct: 245 RRGEAPAPAQGLVLWRVAYDDDPD 268 >UniRef50_Q88XU9 tRNA pseudouridine synthase A n=6 Tax=Lactobacillales RepID=TRUA_LACPL Length = 262 Score = 139 bits (350), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 87/248 (35%), Positives = 128/248 (51%), Gaps = 7/248 (2%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN---EPITVFCAGRTDAGVHGT 66 YK+ L YDG+ + G+QRQ R+V++ + KA++++A EPI ++ AGRTDAGVH Sbjct: 5 YKVVLA--YDGTNFAGFQRQPHQRTVEQVVTKAVNKMAKDPVEPIVIYGAGRTDAGVHAF 62 Query: 67 GQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 GQ +HF+ G+N+ LP D V+ V VP+DFHAR+ +RY Y Y + Sbjct: 63 GQTLHFDLPYEINPEGVRRGLNSMLPMDTIVKAVSIVPNDFHARYDTVGKRYWYRAYQNE 122 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHIN--VT 184 HF D +R+ +A L G +DF++F A Q+ R + Sbjct: 123 FVDPFKRHYTGHFKFAADIDRIQQAIGDLEGRHDFSTFVASGSQAHDHVREIYSAKAWAL 182 Query: 185 RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 + + + F+++ VR +V LME+G + I LLAAKDR A TA A G Sbjct: 183 PDEREIQFEFCGSGFLYNQVRIMVAVLMEIGQGRRAVDCIPALLAAKDREQARGTAPAAG 242 Query: 245 LYLVAVDY 252 LY+ V Y Sbjct: 243 LYMKKVYY 250 >UniRef50_C1ZAN4 Pseudouridylate synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZAN4_PLALI Length = 305 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 91/276 (32%), Positives = 132/276 (47%), Gaps = 22/276 (7%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 + L I YDG+ Y GWQ Q S+Q L +A+ + E ++ AGRTDAGVH GQVV Sbjct: 8 LKLTIAYDGTAYCGWQTQPNGVSIQSTLMQAIQEFTAETPVLYAAGRTDAGVHAVGQVVS 67 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 F TT+ A + + LP DI +R V+ V FHA+F A + YRY+ +N + Sbjct: 68 FSTTSPVPAANFRPALQRFLPDDIVIRQVEDVQPGFHAQFHARLKTYRYLFHNAPVWSPF 127 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR------ 185 + LD + M A + ++G DF S +T R V+ +V R Sbjct: 128 YRQYALWHRTRLDEQAMDFAIRQIVGTFDFRSLETQWPNRKTSVRTVIKASVQRIRNWNL 187 Query: 186 ---------------HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAA 230 G ++ ++I AN F+++MVR I G+L+ +G + E++ Sbjct: 188 LGENGPPSEECQLDPEGEFLCMEITANGFLYNMVRTIAGTLIHIGRGKWGPEKLREIVDL 247 Query: 231 KDRTLAAATAKAEGLYLVAVDY-PDRYDLPKPPMGP 265 +DR A TA A GLYL VDY P LP + P Sbjct: 248 QDRRRAGETAPAHGLYLWHVDYAPATQSLPTGDLPP 283 >UniRef50_B1W3X8 tRNA pseudouridine synthase A n=16 Tax=Actinomycetales RepID=TRUA_STRGG Length = 284 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 92/268 (34%), Positives = 139/268 (51%), Gaps = 23/268 (8%) Query: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPIT--VFCAGR 58 MSDQ +P ++ L + YDG + GW +Q R+VQ ++E AL V +T + AGR Sbjct: 1 MSDQAEPGFVRVRLDLSYDGKDFSGWAKQTSRRTVQGEIEDALRTVTRSSVTYDLTVAGR 60 Query: 59 TDAGVHGTGQVVHFETTALRKDAAWT-------LGVNANLPGDIAVRWVKTVPDDFHARF 111 TDAGVH GQV H + +A W + LP D+ + P F+ARF Sbjct: 61 TDAGVHARGQVAHVDL----PEAVWAEHEEKLLRRLAGRLPLDVRIWRAAPAPAGFNARF 116 Query: 112 SATARRYRYIIYNHRLRPAVLSKGVTHFYE-PLDAERMHRAAQCLLGENDFTSFRAVQCQ 170 SA RRY Y + + L++G +++ PLD + M+ AA ++GE+DF ++ C+ Sbjct: 117 SALWRRYAYRVGDRPGGVDPLTRGHVLWHDRPLDLDAMNEAAALMVGEHDFAAY----CK 172 Query: 171 SR---TPWRNVMHINVTRHGPYVVVD--IKANAFVHHMVRNIVGSLMEVGAHNQPESWIA 225 R T R + + R V+ ++A+AF H+MVR ++G+ + VG +P +W A Sbjct: 173 KREGATTIRTLQKLRWVRDPATGVLTATVQADAFCHNMVRALIGAALFVGDGRRPAAWPA 232 Query: 226 ELLAAKDRTLAAATAKAEGLYLVAVDYP 253 E+LAAK R + GL L V YP Sbjct: 233 EVLAAKVRDPGVHVVRPHGLTLEEVAYP 260 >UniRef50_A5FAV0 Pseudouridylate synthase n=14 Tax=Bacteroidetes RepID=A5FAV0_FLAJ1 Length = 284 Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 86/235 (36%), Positives = 117/235 (49%), Gaps = 2/235 (0%) Query: 18 YDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETTAL 77 Y+G+ Y+GWQ Q SVQE L KALS + N I V AGRTD GVH HF+ Sbjct: 49 YNGTHYHGWQFQPNASSVQETLNKALSVLLNSTINVMGAGRTDTGVHAEEMYGHFDLEKS 108 Query: 78 RKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVT 137 +N+ LP DIAV + V DD H RF AT R Y Y I + ++ L + Sbjct: 109 IDIPVLVHKLNSYLPKDIAVYNLIPVHDDAHCRFDATKRTYEYHI--NTVKNPFLEELSW 166 Query: 138 HFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKAN 197 + + LD E M+ AA+ LL DF F V T + + +V I AN Sbjct: 167 YVTQKLDVELMNEAAKILLKHTDFQCFSKVNTDVNTFDCTIFEAYWKQENNKLVFTISAN 226 Query: 198 AFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 F+ +MVR IVG+L+ +G H + ++A+K+R A + A GLYL + Y Sbjct: 227 RFLRNMVRAIVGTLINIGLHKITLADFENIIASKNREKAGFSVPAHGLYLTKIYY 281 >UniRef50_B5YDX5 tRNA pseudouridine synthase A n=2 Tax=Dictyoglomus RepID=TRUA_DICT6 Length = 245 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/244 (34%), Positives = 130/244 (53%), Gaps = 13/244 (5%) Query: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 + Y G ++G+Q+Q R+VQ +LEK L + +E I V AGRTDAGVH GQVV+F+T Sbjct: 8 LSYIGKDFWGFQKQPGKRTVQGELEKVLKLLFDEDIKVIGAGRTDAGVHALGQVVNFKTK 67 Query: 76 ALRKDAAWTLG--VNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 + + L +N LPGDI ++ V+ V D+FHAR+SA R Y Y+IYN+ + L Sbjct: 68 ESKNFSCDKLYKVLNKLLPGDIKIKKVEIVDDNFHARYSAKRRWYIYVIYNNEEKNLFLR 127 Query: 134 KGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVD 193 +PLD + ++ +A G +DF +F ++ T ++ + Y D Sbjct: 128 DYCWWINKPLDKDLLNLSANLFKGIHDFRNFCVIENYDNT------NVEIYESFWYFKED 181 Query: 194 -----IKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + A F+ MVR IVGS++EVG + + + L + ++ A A GLYL Sbjct: 182 LLIYFVSAPFFLRKMVRFIVGSMVEVGLKKKELEDLEKYLKDRKEERFSSPAPASGLYLF 241 Query: 249 AVDY 252 +DY Sbjct: 242 KIDY 245 >UniRef50_C1XI54 Pseudouridylate synthase n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XI54_MEIRU Length = 263 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 127/245 (51%), Gaps = 3/245 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 +I L +EYDGS + G Q Q + R+VQ++LE ALSQ+ ++ GRTDAGVH Sbjct: 14 RILLTLEYDGSGFAGLQTQAQGERTVQQELEAALSQIPGARPKIWPCGRTDAGVHALAMP 73 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 VH++T +N LP DI + VP DFHAR S R YRY I R+ P Sbjct: 74 VHYDTLDNIPTEKIPHALNTLLPPDIRALAAQEVPADFHARKSCHWREYRYRILQRRMPP 133 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSF--RAVQCQSRTPWRNVMHINVTRHG 187 A+ V L+ M A +CL+G +DF +F + + R +R + + T G Sbjct: 134 ALDRHRVWWIPHSLNLIPMRHALECLVGTHDFKAFAVKEERATVREIYRAHLEVWPTEGG 193 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + ++ + F+ VR++VG+L+E+G + S I LLA+ R A TA A+GLY Sbjct: 194 REIWIEFVGSGFLRGQVRSMVGTLVEIGLGKRDSSSIQSLLASGSRKDAGPTAPAQGLYF 253 Query: 248 VAVDY 252 V Y Sbjct: 254 VRAGY 258 >UniRef50_C6LCX6 Pseudouridylate synthase n=2 Tax=Lachnospiraceae RepID=C6LCX6_9FIRM Length = 280 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 91/274 (33%), Positives = 130/274 (47%), Gaps = 37/274 (13%) Query: 14 LGIEYDGSKYYGWQRQNEVR-SVQEKLEKALSQV-------------------------- 46 L + YDG++Y+GW+ + + ++Q KLE L+++ Sbjct: 7 LTVTYDGTRYHGWEAKPGIEMTIQGKLEAVLTKMLAFPDDVPVQSLIAPAASVVSCNPGA 66 Query: 47 ------ANEPITVFCAGRTDAGVHGTGQV--VHFETTALRKDAAWTLGVNANLPGDIAVR 98 P+ V AGRTDAGVH VH +T L D L N LP DI VR Sbjct: 67 ADGMPGCPVPVKVIGAGRTDAGVHAREMTANVHLDTAMLPGDIRDYL--NRYLPEDICVR 124 Query: 99 WVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGE 158 V V D FH+R++AT + YRY + L+P K V + D M +AA L G Sbjct: 125 EVCIVSDRFHSRYNATGKTYRYTCFTGPLKPVFDRKYVYVLDKTPDIAAMKKAAGYLCGT 184 Query: 159 NDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHN 218 +DF SF ++ R + I +T++ Y+ N F+ HMVR + G+L+E G Sbjct: 185 HDFASFCGNPKMKKSTVRTIDSIEITQNNSYLYFMYHGNGFLQHMVRILTGTLLETGYGR 244 Query: 219 QPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 + + ELLAA+ R LA A A+GL L+ VDY Sbjct: 245 RSPESMPELLAARKRALAGFLAPAQGLCLMKVDY 278 >UniRef50_Q73KE3 tRNA pseudouridine synthase A n=1 Tax=Treponema denticola RepID=TRUA_TREDE Length = 268 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 95/260 (36%), Positives = 136/260 (52%), Gaps = 14/260 (5%) Query: 12 IALGIEYDGSKYYGWQRQNE-----VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGT 66 I L I YDG+ + GWQ+Q + R+VQ +LEKAL+++ PI +GRTD+GVH Sbjct: 10 ILLTISYDGTNFCGWQKQTKEGAETFRTVQGELEKALTKIHKHPIETNGSGRTDSGVHAA 69 Query: 67 GQVVHFETTALRKDAAWTL-GVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 Q V+F A+ L +N+ LP DI V V HARF+A +R YRY I Sbjct: 70 RQAVNFFCDIKSMRASNFLPALNSILPKDIRVMDAAEVSPLLHARFNALSRTYRYKIKCG 129 Query: 126 RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR 185 + A H D ++ A CL GE D T+F A QS + R + Sbjct: 130 KTIFAHEQPYTWHIRRYPDIAALNEMASCLSGELDCTAFSAAGDQSISKSRYIKKAVFFI 189 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLM---EVGAHNQPESWIAELLAAKDRTLAAATAKA 242 Y++ +I ANAF+ MVR+IVG+L+ E+GA + ++L +K R A TA Sbjct: 190 ENDYLIFEICANAFLWKMVRSIVGTLLHLDEIGASKKD---FKDILESKMREKAGPTAPP 246 Query: 243 EGLYLVAVDYPDRYDLPKPP 262 +GL+L +++YP+ DL K P Sbjct: 247 QGLFLWSIEYPE--DLLKAP 264 >UniRef50_C1TLE9 Pseudouridylate synthase n=3 Tax=Synergistaceae RepID=C1TLE9_9BACT Length = 247 Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 124/246 (50%), Gaps = 3/246 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 K AL + Y+G+ + GWQ Q + +VQE LE+AL+ + P+ V AGRTD+GVH GQV Sbjct: 2 KYALELSYEGNHFSGWQLQPDSITVQEVLEEALTVLEGAPVKVSGAGRTDSGVHARGQVA 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH-RLRP 129 FE + TL VNANLP ++V VPDDF AR SA R Y Y +++ P Sbjct: 62 SFELSKTWDPYRLTLAVNANLPEHVSVMRASAVPDDFDARRSALWREYAYFVWHGPSCFP 121 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSF-RAVQCQSRTPWRNVMHINVTRHGP 188 V + D + + + L+GE+DF +F R +C R + + R G Sbjct: 122 HVRDMVWWRKRDDWDMDAVDGCCRALVGEHDFGAFCRLSECPENAV-RTLFSVRHIRRGR 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + I+ F+ +MVR I+G++ V + W LL R +A TA A GL+ Sbjct: 181 LSIFRIRGKGFLTNMVRIILGNIDAVATGKKRLEWFERLLLGGTRVDSATTAPASGLFFW 240 Query: 249 AVDYPD 254 V Y D Sbjct: 241 RVGYDD 246 >UniRef50_B0GAG0 Pseudouridylate synthase n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0GAG0_9FIRM Length = 266 Score = 137 bits (345), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 83/264 (31%), Positives = 136/264 (51%), Gaps = 22/264 (8%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +I + + YDG+ Y GWQ Q +++E L + +S++ E I + A RTD+GVH G V Sbjct: 3 RIRIVVAYDGTNYCGWQIQPNGITIEEILNRQISKLTGEDIRIIGASRTDSGVHALGNVA 62 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARF-SATARRYRYIIYNHRLRP 129 F+T + + +N +P DI + V D+H R+ + ++ Y Y IYN ++R Sbjct: 63 VFDTESRIPGDRFAYALNQKMPEDIVIVRSDEVQIDWHPRYQNEISKTYEYHIYNAKVRN 122 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT----- 184 + ++ T LD E+M + A+ +LGE+DF SF V+ ++ R V I + Sbjct: 123 PLKNRYSTFVSFDLDVEKMRQGAKYILGEHDFASFCNVRTNAKDTVRTVHEITIKEIPMD 182 Query: 185 --------------RHGPYVVVDIKANAFVHHMVRNIVGSLMEVG-AHNQPESWIAELLA 229 + +V+ + N F+++MVR I G+L+ VG +PE I ++L Sbjct: 183 KFQASNWGQENSNLENEKEIVIRVTGNGFLYNMVRIIAGTLIRVGRGFYEPEK-IRDILE 241 Query: 230 AKDRTLAAATAKAEGLYLVAVDYP 253 AK+ T TA GL LV++DYP Sbjct: 242 AKEHTSEGITAPPNGLVLVSIDYP 265 >UniRef50_C5RIE6 Pseudouridylate synthase n=1 Tax=Clostridium cellulovorans 743B RepID=C5RIE6_CLOCL Length = 245 Score = 137 bits (345), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 135/242 (55%), Gaps = 1/242 (0%) Query: 12 IALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + L IE+DGS+Y GWQ Q ++ ++VQ K+E LS++ E I V R D G H G + Sbjct: 4 LKLTIEFDGSRYKGWQNQKDKEQTVQGKIETVLSKMTGEEIEVIGCERIDTGAHADGYIA 63 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 +F+T A ++ + LP DI V++++ V + FHAR++A A+ Y Y+I N+ LR Sbjct: 64 NFKTNCELSCTAISIYLYEFLPEDILVKFIEEVDERFHARYNAKAKVYEYVINNNNLRNV 123 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 K H L+ E M +AA+ G++DF +F ++ +++ R V I + + + Sbjct: 124 FNRKYSYHIDIDLNIEEMLKAAEAFKGKHDFKAFTNLKSSAKSTVRTVEDILIKKDNGLI 183 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 +++ A+ F+ +M R IVG+L+EVG N + + ++L + A+A+ L+L V Sbjct: 184 KIELIADDFLLNMERIIVGTLIEVGKGNVKATNVFKMLKDGKKIETIPMAQAKALFLKKV 243 Query: 251 DY 252 Y Sbjct: 244 IY 245 >UniRef50_C8X4C1 Pseudouridylate synthase n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X4C1_DESRD Length = 254 Score = 137 bits (344), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 91/250 (36%), Positives = 122/250 (48%), Gaps = 14/250 (5%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++ L + Y G+ + GWQ Q R+VQ LE A + + P+ V AGRTD+GVH GQV Sbjct: 3 RLKLVVAYTGTHFAGWQLQPRDRTVQGCLEDAFATLCQHPLRVHGAGRTDSGVHAVGQVC 62 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH----- 125 H + + W +NA LP DIAV V DDFHARFSA A+ Y Y I+ Sbjct: 63 HCDIPPEKNHIPWQKALNAILPKDIAVCEAAYVRDDFHARFSAQAKEYAYTIWTEPRYVL 122 Query: 126 -RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHI--N 182 + RP V S G +D +M AA+ L G DF +F+ R V H+ Sbjct: 123 PQRRPLVWSVGR------VDEHKMAVAARMLTGTFDFAAFQNTGTPVSHTVRTVYHLAPE 176 Query: 183 VTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 G A+ F+ MVRNI+G L+ VG + + LL + R +A ATA Sbjct: 177 PGAAGNESTWLFHADGFLKQMVRNIMGCLVAVGRNKISVDEVKILLEGQKREMAPATAPP 236 Query: 243 EGLYLVAVDY 252 +GL L V Y Sbjct: 237 QGLCLRKVKY 246 >UniRef50_A9NEH2 Pseudouridylate synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEH2_ACHLI Length = 240 Score = 137 bits (344), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 127/242 (52%), Gaps = 13/242 (5%) Query: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 YDG+ Y G+Q+Q +Q +EKA + I F A RTD GVH QV+HF++ Sbjct: 7 FSYDGTNYSGYQKQINQLGIQTVIEKAFRLMTQIDIETFAASRTDKGVHALHQVLHFDSD 66 Query: 76 ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKG 135 W +N LP DI + V V D+FHAR SA ++RY IY +P+ + +G Sbjct: 67 IELTSDQWVDALNKRLPTDIRLMKVTPVKDNFHARHSAKSKRY---IYKIAKQPSTVFRG 123 Query: 136 -----VTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 V HF L + +H ++G +DF+ F + + + P + + + + Sbjct: 124 NHELYVKHFDIDLVKDHLH----TIVGTHDFSGF-SPNKEHKPPIKTIYSFDYKETKTHY 178 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + I N+F+ +MVR I+G+++ V + +P++ + LL K+R L+A TA A+GLYL + Sbjct: 179 IFSIHGNSFLRYMVRIIMGNVIAVATNKKPQNQLEILLETKNRELSAKTADAKGLYLKHI 238 Query: 251 DY 252 Y Sbjct: 239 YY 240 >UniRef50_B5CS63 Pseudouridylate synthase n=6 Tax=Clostridiales RepID=B5CS63_9FIRM Length = 264 Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 88/244 (36%), Positives = 127/244 (52%), Gaps = 4/244 (1%) Query: 14 LGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHF 72 L I YDG+ Y GWQRQ N ++Q LE +S+ A + V +GRTDAGVH GQ Sbjct: 18 LVIAYDGTAYQGWQRQANTEMTIQGILESCISKAAGYAVEVNGSGRTDAGVHARGQTASV 77 Query: 73 ETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVL 132 +D +T VN LP DI +R + FHAR SA +RY Y I + +P V Sbjct: 78 VLHGKAEDGFFTEKVNKLLPPDIRIREAGLEKNGFHARKSAVGKRYVYQI-DTDEKPDVF 136 Query: 133 SKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVV 191 + T HF + LD M +AA+ L G ++F ++ + ++ T R + I V G + Sbjct: 137 DRRYTYHFPKKLDIAAMQQAAELLTGTHEFAAYTDKKDETSTK-RTIYAIMVGGQGGRIN 195 Query: 192 VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVD 251 + + F++HMVR + G+L+EVG + + L AKDRT A A GL+L V Sbjct: 196 IQYEGTGFLYHMVRILTGTLLEVGMGTRRIESVTIALEAKDRTKVGFLAPARGLFLDEVY 255 Query: 252 YPDR 255 Y ++ Sbjct: 256 YKEK 259 >UniRef50_A9B439 Pseudouridylate synthase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B439_HERA2 Length = 272 Score = 136 bits (343), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 126/246 (51%), Gaps = 7/246 (2%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 +AL EY G+ + G Q Q R+VQ +LE A ++ +E AGRTDAGVH QV H Sbjct: 5 LALCFEYLGTAFCGSQWQPGGRAVQTELETAWQRLTSETGRWIFAGRTDAGVHALAQVAH 64 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 + R +NA P DI+V +P FHARFSA R YRY+ + A Sbjct: 65 IVSDTPRSLDTIAKAINAITPPDISVHEAWEMPTGFHARFSARQRTYRYVFDSAPAPSAT 124 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT----RHG 187 LS V LD M A L+G +DF +F + T R M + Sbjct: 125 LSGRVLRLDHQLDWAAMQAALDTLIGTHDFAAFAGAGHEGSTT-RTCMLAQLRPAEWLGR 183 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVG-AHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 P V+ ++ANAF+ HMVRNIVG+L+ VG E+W A ++A++DR A TA +GLY Sbjct: 184 PVTVLHLQANAFLKHMVRNIVGTLLMVGDGRLSLEAWQA-IIASRDRRNAGPTAPPQGLY 242 Query: 247 LVAVDY 252 L ++ Y Sbjct: 243 LESIGY 248 >UniRef50_D1YY68 Pseudouridylate synthase n=1 Tax=Methanocella paludicola SANAE RepID=D1YY68_METPS Length = 279 Score = 136 bits (342), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 133/247 (53%), Gaps = 25/247 (10%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQ--VANEPITVFCAGRTDAGVHGTGQ 68 K+A + Y G+ + G Q Q R+V+ +L K L + + E V +GRTDAGVH GQ Sbjct: 14 KVAFKLAYVGTDFSGSQSQPGRRTVEGELRKGLVEKGIIGEKTKVEFSGRTDAGVHALGQ 73 Query: 69 VVHFETTALRKDAAWTLG--VNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 V+ F + K+ T +N+ LP D+ V VPDDF R A +R YRY++Y Sbjct: 74 VIAF----VPKNDKLTEPRIINSVLPADMWVYAKAVVPDDFDPRRHAVSRTYRYLLYA-- 127 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 P V+ + + + +Q G +DFT+F +V+ ++ P R V I+VT+ Sbjct: 128 --PDVIERRIVTY------------SQLFPGTHDFTNFSSVEP-NKNPVRTVKSISVTKR 172 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G V+DI+A++F+ +MVR IV L VG++ +P WI ++L + A A GLY Sbjct: 173 GDMYVIDIEADSFLWNMVRKIVTGLRLVGSNKRPAQWIEQMLKPDEYREGIPPALAAGLY 232 Query: 247 LVAVDYP 253 L+ V+YP Sbjct: 233 LMKVEYP 239 >UniRef50_C1A3U6 Pseudouridylate synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A3U6_GEMAT Length = 259 Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/257 (36%), Positives = 131/257 (50%), Gaps = 26/257 (10%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEP-ITVFCAGRTDAGVHGTGQVV 70 I L +YDG ++ GWQRQ +VR+VQ +E+ L +++ + AGRTDAGVH GQ V Sbjct: 6 ILLVTQYDGGRFAGWQRQPDVRTVQGDMERVLGRLSGGLYVPAVGAGRTDAGVHAHGQGV 65 Query: 71 HFETTALRKDAAWTL-----GVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 +R WT +NA LP DI V + +FH R+SATARRY Y+I Sbjct: 66 -----GVRMPPQWTAPRLRRAMNALLPDDIWVAAAYQMEPEFHPRYSATARRYGYLIGTD 120 Query: 126 RLRPAVLSKGVTH---FYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHIN 182 L + + H + PLD E +H A LLGE+ F +F + T + H Sbjct: 121 ELASSPFRR--RHEWALHRPLDVEALHGEAAELLGEHTFRAF----AIAHTAPVDDHHRC 174 Query: 183 VTRHGPYV------VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLA 236 + H +V V ++ AN F+HHMVR +VG++++V +P IA LL D Sbjct: 175 IIHHAAWVPREGGWVFEVSANRFLHHMVRFLVGTMVDVALGRRPRGTIARLLVTPDNADT 234 Query: 237 AATAKAEGLYLVAVDYP 253 + A A GL L V YP Sbjct: 235 SPPAPAHGLSLREVTYP 251 >UniRef50_Q0W2P8 tRNA pseudouridine synthase A n=1 Tax=uncultured methanogenic archaeon RC-I RepID=TRUA_UNCMA Length = 266 Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 86/244 (35%), Positives = 130/244 (53%), Gaps = 22/244 (9%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPI--TVFCAGRTDAGVHGTGQ 68 K AL I Y G+ +YG Q Q + +V+ +L KAL + + + AGRTDAGVH GQ Sbjct: 2 KTALKIAYVGTNFYGSQAQPGLPTVESELRKALEEAGAIKLGTKIAMAGRTDAGVHALGQ 61 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 VV FE + A +N+ LP D+ VPDDF R AT+R YRYI+Y Sbjct: 62 VVAFEQADPKLTAPRI--INSKLPKDLWAYARAEVPDDFDPRRHATSREYRYILYA---- 115 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 P V+ + R+ + LG +DFT+F +V+ + P R V +++ + G Sbjct: 116 PDVIER------------RLKECSSRFLGTHDFTNFSSVEA-GKYPVRTVTRLDIAKRGD 162 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + ++DI+A++F+ +MVR IV +L VG + +P+ WI ++ + R A GLYL Sbjct: 163 FYIIDIEADSFLWNMVRKIVTALRLVGENKRPDGWIEKMFDPEYRE-GIPPAAPGGLYLS 221 Query: 249 AVDY 252 V+Y Sbjct: 222 RVNY 225 >UniRef50_Q6MDE3 tRNA pseudouridine synthase A 2 n=2 Tax=Parachlamydiaceae RepID=TRUA2_PARUW Length = 262 Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 126/246 (51%), Gaps = 6/246 (2%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 I L I YDG Y+GWQ+ SV++ L+ +L Q+ I++ A RTD GVH GQ+V+ Sbjct: 18 IKLKIAYDGQAYFGWQKTPAGPSVEKTLQNSLEQILQHTISLQAASRTDKGVHARGQIVN 77 Query: 72 FETTALRKD-AAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 F TT D + L +N+ LP D+ + + +P FH + A+ Y Y I ++ Sbjct: 78 FLTTKSITDLQKFILSLNSLLPTDLRILSAEKMPSTFHPTLNCVAKEYCYYICYDFVQLP 137 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSF----RAVQCQSRTPWRNVMHINVTRH 186 H PL +M +A L+GE+DF++F + V +H+ V H Sbjct: 138 EYRPYSWHCPFPLMLGKMTQAISVLIGEHDFSAFCNFKKNVNYTDYIRRVQAIHLEVLNH 197 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 + + IK N F++ MVRNIVG+L+ +G I +L ++DR +A TA A GL+ Sbjct: 198 KR-LCIRIKGNHFLYKMVRNIVGTLIYIGKGKLMVEDIPSILQSQDRKMAGVTAPAHGLF 256 Query: 247 LVAVDY 252 L V Y Sbjct: 257 LQTVLY 262 >UniRef50_Q1AU61 Pseudouridylate synthase n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AU61_RUBXD Length = 257 Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/242 (35%), Positives = 122/242 (50%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++A +EYDG+ + GW RQ R+V+ +L +AL V P+ + AGRTDAGVH +GQVV Sbjct: 2 RLAGLVEYDGAGFSGWARQPGRRTVEGELSRALETVLRHPVRLTAAGRTDAGVHASGQVV 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 F+ +A L D+A+R P F AR A +R Y Y I N +R Sbjct: 62 SFDARDGTDPGTLAYKASAVLSEDVALRRCVAAPPGFDARRDAASRSYEYRIVNAPVRSP 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + + H LD + AA+ +LG +DF +F + R V R G + Sbjct: 122 LRRRRAVHVGYRLDERLLGEAARRVLGVHDFRAFTPAKSHHVRFERAVSESRWERCGDLL 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 V I A+AF+++MVR +VG+++EV + + ELL R TA A GL LV V Sbjct: 182 VYRITADAFLYNMVRALVGTMLEVARGRRDLASFEELLGGARRAEGGPTAPARGLTLVRV 241 Query: 251 DY 252 Y Sbjct: 242 RY 243 >UniRef50_A0Z5L5 Pseudouridylate synthase n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z5L5_9GAMM Length = 226 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 60/112 (53%), Positives = 82/112 (73%) Query: 148 MHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNI 207 MH A+Q LLGE+DF++FRA QCQ+ P R + ++V R G +V++DI+ANAF++HMVRN+ Sbjct: 102 MHNASQILLGEHDFSAFRAAQCQAAHPVRQIFGVSVNRVGDFVILDIEANAFLYHMVRNL 161 Query: 208 VGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDLP 259 VGSL VG+ +P WI +LL KDRTL TA A GLYL ++ YP+ + LP Sbjct: 162 VGSLQMVGSGQRPPEWIEQLLEGKDRTLGGDTASASGLYLQSITYPEHFGLP 213 >UniRef50_C6WLZ4 Pseudouridylate synthase n=4 Tax=Actinomycetales RepID=C6WLZ4_ACTMD Length = 314 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 89/252 (35%), Positives = 126/252 (50%), Gaps = 8/252 (3%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++ L + YDG+++ GW RQ R+V LE +S V E + + AGRTDAGVH GQV Sbjct: 38 RVRLDLAYDGTEFSGWARQPNRRTVCGVLEDTMSTVLREDVVLTVAGRTDAGVHAAGQVA 97 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 H + A + LP D+ V + VP F ARF+A R Y Y + + Sbjct: 98 HVDLPEAADVAGLPKRLARALPADVRVFSARVVPAAFDARFAALRRHYEYRVTDAPFGAH 157 Query: 131 VLSKGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSR---TPWRNVMHINVTRH 186 L + T + LD M+ A+ +LGE DF ++ C+ R T R + + R Sbjct: 158 PLRRLDTLAWPRQLDVAAMNAASGLMLGERDFCAY----CRRREGATTIRELQRLEWVRE 213 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G + + A+AF H MVR++VG+L+ VG +P W A LL+ R+ A GL Sbjct: 214 GDLLTAFVSADAFCHSMVRSLVGALLAVGEGRKPVEWPASLLSLHSRSSEVTVAPPHGLS 273 Query: 247 LVAVDYPDRYDL 258 LV VDYP DL Sbjct: 274 LVRVDYPADEDL 285 >UniRef50_B4D9U5 Pseudouridylate synthase n=2 Tax=Verrucomicrobia RepID=B4D9U5_9BACT Length = 251 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 127/249 (51%), Gaps = 6/249 (2%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + ++ + I YDG + GWQ Q +VQ+ +E A ++ + V +GRTDAGVH Q Sbjct: 4 ILRLKMLIAYDGRPFRGWQSQATKDAVQDHMEAAFAKTIGGRVVVHGSGRTDAGVHALAQ 63 Query: 69 VVHFETTALRKD-AAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR- 126 + H + A R + +AW +N LP +I V V DFHARF A + Y Y ++N Sbjct: 64 IAHADVPAARLEVSAWRGALNNFLPPEIRVLRVSRAAPDFHARFHARGKIYTYRMWNASY 123 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSF---RAVQCQSRTPWRNVMHINV 183 L P + + H LD + + + AQ L G++DF F RA + R + HI + Sbjct: 124 LHPLEIGR-AWHMPSKLDLDILRQGAQMLEGKHDFAGFAANRAPGYAAEDTVRTIQHICL 182 Query: 184 TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 TR G + + + N F++ MVR + G+L+ ++I ELLA K + A AE Sbjct: 183 TRRGDLLNLRFEGNGFLYKMVRLLTGTLVRCAQGRAELTFIKELLAGKGAKKTSFAAPAE 242 Query: 244 GLYLVAVDY 252 GLYL V Y Sbjct: 243 GLYLTRVLY 251 >UniRef50_C3WLS9 Pseudouridylate synthase n=2 Tax=Fusobacterium RepID=C3WLS9_9FUSO Length = 246 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/244 (34%), Positives = 126/244 (51%), Gaps = 5/244 (2%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 I + YDGS+YYG+QRQ +VQ ++EK L V E I + AGRTD GVH QV + Sbjct: 6 IKIEFRYDGSRYYGFQRQPNKETVQGEIEKILKIVTKEDINLISAGRTDRGVHANHQVSN 65 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYII-YNHRLRPA 130 F T++ + + LP DI + V+ V + F+AR A R Y YII + A Sbjct: 66 FYTSSTIPVEKYKYLLTRALPKDIDILSVEEVDEKFNARHDAKMREYVYIISWEKNPFEA 125 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP-Y 189 K V + +DAER+ + LG +DF +FR C S+ R + I+V Sbjct: 126 RYCKFVK---DKIDAERLEKIFSSFLGIHDFRNFRLSDCMSKVTVREIYSIDVKYFSENK 182 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 + + I+ +AF+ VR +VG+ +EV N P++ I +L + + +AEGLYL Sbjct: 183 LKICIRGSAFLKSQVRIMVGTALEVYYKNLPKNHIDLMLNDFSKEYKKSLVEAEGLYLNR 242 Query: 250 VDYP 253 ++Y Sbjct: 243 INYS 246 >UniRef50_A4CM73 Pseudouridylate synthase n=2 Tax=Flavobacteriales RepID=A4CM73_9FLAO Length = 253 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 131/251 (52%), Gaps = 16/251 (6%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQV-ANEPITVFCAGRTDAGVHGTGQV 69 + L I Y G+ Y+GWQ+Q ++QE LE + ++ N PI + AGRTDAGVH Sbjct: 2 RFFLEISYLGTAYHGWQKQPNALAIQEILEDRMGKLLGNGPIDLVGAGRTDAGVHARQLF 61 Query: 70 VHFETTALRKDAAWTLG----VNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 HF+ +DAA G +NA LP DIAV+ V V + HARF AT R Y Y H Sbjct: 62 AHFD-----RDAALPSGFVHRLNAFLPADIAVKGVYEVAPNAHARFDATGRTYEY----H 112 Query: 126 RLRPAV-LSKGVTH-FYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV 183 +R +G+ + F LD M+RAA +LG +F +F + +T ++ Sbjct: 113 LVREKDPFREGLAYQFQGELDFGAMNRAAASMLGYGNFKAFSRSKSDVKTYNCDLREARW 172 Query: 184 TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 V I A+ F+ +MVR +VG+L+EVG + ++ ++DR+ A + A+ Sbjct: 173 EEGDGVWVFTISADRFLRNMVRAVVGTLLEVGKGRLDAEGVKTIIKSQDRSEAGVSVPAK 232 Query: 244 GLYLVAVDYPD 254 GLYL + YPD Sbjct: 233 GLYLTRITYPD 243 >UniRef50_A6LDA7 tRNA pseudouridine synthase A n=46 Tax=Bacteria RepID=TRUA_PARD8 Length = 252 Score = 134 bits (337), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 88/252 (34%), Positives = 128/252 (50%), Gaps = 17/252 (6%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 Y I LG Y+G + GWQ Q +VQ+ +E+AL+ + P+ + AGRTDAGVH + Sbjct: 4 YFIYLG--YNGKNFRGWQIQPNGMTVQQSIEEALAILMRTPVPIVGAGRTDAGVHAHLMI 61 Query: 70 VHFETTALRKDAAWTL-GVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYII------ 122 HF+ D + +N LP DIAV + V + HARF AT+R Y+Y + Sbjct: 62 AHFDWEEPIGDLVFLAEKLNRLLPKDIAVYKIVPVVPEAHARFDATSRTYKYYVTTKKDP 121 Query: 123 YNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHIN 182 +NH L + + LD E M+ A + L DFTSF + +T ++ H Sbjct: 122 FNHELVYKLPGR--------LDFEAMNEACKVLFDYIDFTSFSKLHTDVKTNNCHIQHAG 173 Query: 183 VTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 T+ G V I+A+ F+ +MVR IVG+L+EVG ++ AKDR A + Sbjct: 174 WTQEGDIWVFTIRADRFLRNMVRAIVGTLLEVGRGRLTIDGFRNVIEAKDRCKAGTSVPG 233 Query: 243 EGLYLVAVDYPD 254 L+LV V YP+ Sbjct: 234 HALFLVDVTYPE 245 >UniRef50_C2D958 Pseudouridylate synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D958_9ACTN Length = 311 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 100/276 (36%), Positives = 141/276 (51%), Gaps = 30/276 (10%) Query: 7 PPVYKIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHG 65 P V + + Y G+ + G+ QNE VRSV+ L +ALS IT+ CAGRTDAGVH Sbjct: 39 PFVATLVIRFGYVGTHFCGYAAQNESVRSVEGCLTRALSTFLRRNITLTCAGRTDAGVHA 98 Query: 66 TGQVVHFETT----ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYI 121 Q V F T + K + ++ P DI++R + P DF ARFSA R Y Y Sbjct: 99 HAQYVSFPITQSELGMSKHKIMS-ALSGLCPDDISIRTLYRAPLDFSARFSACERSYTYR 157 Query: 122 IYNHRLRPAVLS------KGVTHFYEPLDAERMHRAAQCLLGENDFTSF------RAVQC 169 I L+P + K + H + + M+ A + L GE++F SF + ++ Sbjct: 158 IALGPLKPILTHEFVWWVKNIPH----VCMDDMNAAGEYLAGEHNFKSFCKASSAQLLEE 213 Query: 170 QSRTPWRNVMHINVTRHGPYVV------VDIKANAFVHHMVRNIVGSLMEVGAHNQPESW 223 Q + R + I V+R Y+V +DI NAF+H+MVR I SL+EVG + W Sbjct: 214 QGLSLNRCLTSIKVSRD--YIVGEQILRLDITGNAFLHNMVRIITASLLEVGRGARQPDW 271 Query: 224 IAELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDLP 259 I ++L + RT AA TA A+GL L V YP +P Sbjct: 272 IQDVLRQQTRTAAAMTAPAQGLTLERVGYPAGLLVP 307 >UniRef50_A6DH96 Pseudouridylate synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DH96_9BACT Length = 276 Score = 134 bits (336), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 82/244 (33%), Positives = 127/244 (52%), Gaps = 4/244 (1%) Query: 14 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN-EPITVFCAGRTDAGVHGTGQVVHF 72 L I++DG+ ++GWQ QN+ +VQE++EKAL+ + N I + +GRTDAGVH G F Sbjct: 6 LSIQFDGTTWFGWQSQNDFEAVQEQIEKALNTLYNCSEIKIDGSGRTDAGVHAFGLCATF 65 Query: 73 ETTALRKDAAWTL--GVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 + K + TL G+NA LP I +R DFHARFS + Y Y I N Sbjct: 66 TEPKISKFTSDTLRKGLNALLPVSIRIRSALQCETDFHARFSCIGKTYVYFIDNSTTSSP 125 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRT-PWRNVMHINVTRHGPY 189 +L+ H + L+ E+M ++ Q L G++DF++F + + R V + G Sbjct: 126 ILAPYSWHMRKKLNREKMRQSLQHLEGKHDFSAFTVDRKNLQGHAIRTVFKAELIEIGHI 185 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 V + + F++ MVR++ G ++ VG Q + L + R+ A TA A+GL+L Sbjct: 186 VALLFTGDGFLYRMVRSMAGEVVNVGMEFQNPQHTLDALESHQRSEAGVTAPAKGLFLGQ 245 Query: 250 VDYP 253 Y Sbjct: 246 CYYS 249 >UniRef50_C0QUR7 Pseudouridylate synthase n=4 Tax=Hydrogenothermaceae RepID=C0QUR7_PERMH Length = 244 Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 85/240 (35%), Positives = 124/240 (51%), Gaps = 5/240 (2%) Query: 14 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFE 73 L I Y G Y+GWQ+Q + R+VQ LE+ L + E I + +GRTDAGVH GQV +F+ Sbjct: 9 LVIMYIGKNYHGWQKQPKHRTVQGVLEEKLKVLFKEDIVLIGSGRTDAGVHALGQVANFK 68 Query: 74 TTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 T + RK +NA LP DI+V+ V+ VP FHARFSA + Y Y IY +P Sbjct: 69 TISYRKPEEIYRYLNATLPRDISVKSVEEVPLSFHARFSAKGKTYIYRIYT---KPDPFL 125 Query: 134 KGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 G + + LD + M A + + D S R + +++T G + + Sbjct: 126 HGFGWYISKKLDLKGMLEALEIVKKSKDLRSLSKKGEYLREDV-EIRELSMTYDGKIIEI 184 Query: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 I A+ F+ +MVR IVG ++++G + ++ AKD T A EGL+L V Y Sbjct: 185 QITASHFLRYMVRKIVGHVVQIGLGSLSIQEFENIIEAKDPTKGLFIAPPEGLFLKEVYY 244 >UniRef50_B3EQM8 Pseudouridylate synthase n=1 Tax=Chlorobium phaeobacteroides BS1 RepID=B3EQM8_CHLPB Length = 233 Score = 133 bits (335), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 77/204 (37%), Positives = 112/204 (54%), Gaps = 5/204 (2%) Query: 14 LGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHF 72 + IEYDG+ + GWQ+Q E V +VQ LE LS++ E + + AGRTD GVH GQV +F Sbjct: 1 MTIEYDGTDFSGWQKQPEGVVTVQGVLETTLSRIVQEEVVMTAAGRTDRGVHARGQVANF 60 Query: 73 ETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVL 132 T + +NA LP + +R ++ VPD FHAR+SA R YRY +P+ L Sbjct: 61 RTASCLSTGRLLHSLNALLPSTVCIRDMQEVPDSFHARYSALFREYRYFFLE---KPSAL 117 Query: 133 SKGVTHFYEP-LDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVV 191 K Y LD +R++R A L+G +DF+++ Q+ + + V + R VV Sbjct: 118 GKRYAGVYGGRLDVDRLNRCAGELVGRHDFSAYAKEDAQNGSTFCTVFGASWGRQDEKVV 177 Query: 192 VDIKANAFVHHMVRNIVGSLMEVG 215 I AN F+ MVR +V + +E G Sbjct: 178 FRIAANRFLRTMVRFLVSAQLEAG 201 >UniRef50_A8S765 Pseudouridylate synthase n=4 Tax=Ruminococcaceae RepID=A8S765_9FIRM Length = 254 Score = 132 bits (333), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 87/245 (35%), Positives = 128/245 (52%), Gaps = 3/245 (1%) Query: 14 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFE 73 L + YDG+ Y G+Q Q RSV + AL V + RTDAGVH G ++F Sbjct: 5 LTLAYDGTNYCGFQVQPNGRSVAATFQDALEAVLGSRPDIKGCSRTDAGVHALGFRLNFH 64 Query: 74 TTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 L +N +LP DI V +TVP+DFHAR++A + Y Y I+NH + + Sbjct: 65 ADTRIPPQKLPLALNQHLPPDIRVLAAQTVPEDFHARYAAHTKTYLYRIHNHPIDSPFDA 124 Query: 134 KGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRT---PWRNVMHINVTRHGPYV 190 T LD M AAQ +G +DF + A + R + +VTR G V Sbjct: 125 AYYTRVPRRLDEAAMQAAAQQFVGTHDFLALCAAGSSAAAHGDTVRTITDCHVTRRGDEV 184 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 +++ A+ ++++MVR + G+L EVGA + I +LA++DR+ A T A+GL+L V Sbjct: 185 DIEVTADGYLYNMVRILAGTLCEVGAGRLRAADIPAILASRDRSRAGPTLPAKGLFLKCV 244 Query: 251 DYPDR 255 DYP+R Sbjct: 245 DYPER 249 >UniRef50_A9RTE3 Pseudouridylate synthase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RTE3_PHYPA Length = 299 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/245 (34%), Positives = 125/245 (51%), Gaps = 9/245 (3%) Query: 26 WQRQNEVRSVQEKLEKALSQVANEP---ITVFCAGRTDAGVHGTGQVVHFETTALRKDAA 82 WQ Q S+QEK+E ALS+ P + + AGRTDAGVH GQV HF T D Sbjct: 36 WQIQKNYVSIQEKVEDALSKFTRLPRDELKLVGAGRTDAGVHAWGQVAHFTTPTCFCDLE 95 Query: 83 -WTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYE 141 +N LP DI + V +V DFHAR+SA + Y+Y Y + H Sbjct: 96 PLHTSLNGILPPDIRILEVSSVQPDFHARYSACRKTYQYKAYVSPVMDPFQHAYAYHIKN 155 Query: 142 PLDAERMHRAAQCLLGENDFTSF--RAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAF 199 ++ M AA +G ++F++F + SR R+++ V+ GP ++ +++ +F Sbjct: 156 SVNIAAMEEAASYFVGTHNFSAFANHSADTASRDTLRDLLSFTVSSIGPQLLFEVEGKSF 215 Query: 200 VHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAA---TAKAEGLYLVAVDYPDRY 256 ++ VRN+VG L++VG P S + +L +DR A A A GLYL++V Y D+ Sbjct: 216 MYKQVRNMVGLLVQVGKELVPPSMVRTILLTEDRRELAKISPVAPAHGLYLMSVGYDDKV 275 Query: 257 DLPKP 261 P P Sbjct: 276 LRPVP 280 >UniRef50_D1N376 Pseudouridylate synthase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N376_9BACT Length = 272 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 86/261 (32%), Positives = 137/261 (52%), Gaps = 14/261 (5%) Query: 1 MSDQQQP--PVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN-EPITVFCAG 57 MS ++ P P + L I YDG+ Y GWQ Q +VQ+++++ L+++ N +PI + + Sbjct: 1 MSIEETPYEPYKRYLLEIAYDGTNYSGWQIQPHRVAVQQRVQEILTKMYNGQPIHLIGSS 60 Query: 58 RTDAGVHGTGQVVHFETTALRKDA---AWTLGVNANLPGDIAVRWVKTVPDDFHARFSAT 114 RTDAGVH + T +R D VN LPGDI +R V+ VP +FHAR+ A Sbjct: 61 RTDAGVHAQRFAASY-LTPVRPDIPTDKILRAVNRQLPGDIKLRTVREVPLEFHARYDAL 119 Query: 115 ARRYRYIIYNHRLRPAVLSKGVTHFYEP---LDAERMHRAAQCLLGENDFTSFRAVQCQS 171 + Y Y++ + P+ + T + P +D E++ A+Q L G +D++SF + Sbjct: 120 GKAYTYVL--NLGDPSPFTDRYT--WRPIHRMDVEKIRAASQVLTGTHDYSSFVVERSLI 175 Query: 172 RTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAK 231 R + I+V G + V N F++ M+R ++G+L GA + +L A Sbjct: 176 DEAVRTIYRIDVQEFGQFCCVTFVGNGFLYKMIRCLMGTLEAAGAGKLSPEAVRRILEAC 235 Query: 232 DRTLAAATAKAEGLYLVAVDY 252 DRT+A TA GL+L+ V Y Sbjct: 236 DRTVAPETAPPNGLFLMKVFY 256 >UniRef50_Q30XU3 tRNA pseudouridine synthase A n=5 Tax=Desulfovibrionales RepID=TRUA_DESDG Length = 278 Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 91/275 (33%), Positives = 128/275 (46%), Gaps = 25/275 (9%) Query: 11 KIALGIEYDGSKYYGWQRQN---------EVRSVQEKLEKALSQVANEPITVFCAGRTDA 61 ++ L I Y G++Y GWQ Q + +VQ+ +E A + + V AGRTD+ Sbjct: 3 RLKLIIAYAGTRYAGWQIQCLPAGRPHAVQQPTVQQAVEDAAKAILGSAVRVHGAGRTDS 62 Query: 62 GVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYI 121 GVH GQV H + + W +NA LP DI+V VPD FHARF A +RY Y Sbjct: 63 GVHAEGQVAHLDIPDAKAAVDWRRALNAKLPEDISVLQAAVVPDGFHARFDAVKKRYTYR 122 Query: 122 IYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHI 181 I+ R + H PLD M AA + G +DF SF+ + T R V I Sbjct: 123 IWLTRAFVLPQRRPFVHMTGPLDIAAMDAAAAFMTGTHDFASFQNAGTELATTVRTVYSI 182 Query: 182 ---------------NVTRHGPYVVV-DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIA 225 + T P + +A+ F+ MVRN++G L+ G + Sbjct: 183 TRTPGLAPDDFPRSHDTTPRAPLELAWHFEADGFLKQMVRNMMGLLLWTGTGRCAPEDVP 242 Query: 226 ELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDLPK 260 ++AA+DR L+A TA A GL + V YPD P+ Sbjct: 243 AIIAARDRRLSAPTAPACGLTMERVFYPDECCPPE 277 >UniRef50_Q6A6S8 tRNA pseudouridine synthase A n=6 Tax=Actinomycetales RepID=TRUA_PROAC Length = 279 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/256 (34%), Positives = 133/256 (51%), Gaps = 13/256 (5%) Query: 14 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVA--NEPITVFCAGRTDAGVHGTGQVVH 71 L I YDG+ + GW Q + R+VQ +LE + +V ++P + AGRTDAGVH GQV H Sbjct: 6 LDIAYDGANFSGWATQPDRRTVQGELETWIPRVLRLDQPTPLTVAGRTDAGVHARGQVAH 65 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 + +A ++ L D+ V+ V+ VP F ARFSA RRY Y +++ RP Sbjct: 66 VDLPDNVDTSAMLRRLSRVLTPDVVVKSVRPVPSTFDARFSALWRRYVYRLWDESSRPDP 125 Query: 132 LSK-GVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSR---TPWRNVMHINVTRHG 187 +++ V LD +R++ A LLG DF +F C+ R T R ++ + R Sbjct: 126 VTRFHVAPVRGHLDLDRLNTAGTSLLGLRDFAAF----CKHREGATTIRTLLDCHAKRLD 181 Query: 188 P---YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 V V ++A+AF H MVR++VG+L V + + + W+ + A+ R + A G Sbjct: 182 DPCGTVEVTVRADAFCHSMVRSLVGALTAVASGRRSQDWLDNVAASTSRASSVLVMPACG 241 Query: 245 LYLVAVDYPDRYDLPK 260 L L V YP DL + Sbjct: 242 LTLEEVGYPSDEDLAQ 257 >UniRef50_Q3Z951 Pseudouridylate synthase n=5 Tax=Dehalococcoides RepID=Q3Z951_DEHE1 Length = 248 Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 88/250 (35%), Positives = 132/250 (52%), Gaps = 9/250 (3%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 + L IEY+G++Y G+Q Q++ ++Q +LE A+ ++ +E V +GRTDAGVH QVV Sbjct: 1 MLLVIEYEGTRYSGFQVQDKGATIQGELETAIRKLTSEQTRVSGSGRTDAGVHAAYQVVS 60 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 + + + G+N LP DIAV+ V V + F R A +R Y Y I N + R + Sbjct: 61 YLSESSLGLDKIKGGLNFYLPPDIAVKEVHFVAESFDVRRRAISREYSYQILNSKTRSPL 120 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPW--RNVMHINVTRHG-- 187 LD + M +A + L GE+DF +F S P + V +N TR G Sbjct: 121 ARLQAWQVPYKLDIKLMEQAFKMLEGEHDFIAF----ASSLGPEIKKTVRRVNWTRLGIR 176 Query: 188 -PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 ++ +I+AN+F+ H VRN +G+L+E+G S L AK LA A A GL Sbjct: 177 EDRLIFNIEANSFLTHQVRNTIGTLVELGRGTMSMSEFEALFEAKTPGLAGPAAPACGLS 236 Query: 247 LVAVDYPDRY 256 LV V+Y + + Sbjct: 237 LVRVNYREPF 246 >UniRef50_B9Y957 Pseudouridylate synthase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y957_9FIRM Length = 268 Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 81/243 (33%), Positives = 127/243 (52%), Gaps = 10/243 (4%) Query: 16 IEYDGSKYYGWQRQNEVR--SVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFE 73 + YDG Y GWQ Q R ++Q+ ++ A+S + +P+++ +GRTDA VH GQV HF+ Sbjct: 9 VSYDGFDYAGWQIQPAERGATIQQTIQDAISVICQQPVSITGSGRTDAQVHAWGQVFHFD 68 Query: 74 TTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 W +N +LP DI +R V+ V FHARF A +RY Y I +L A + Sbjct: 69 VDFSLNAFQWKRAINGHLPKDIHIRSVEAVDSRFHARFDAIGKRYEYRI---QLGEANVF 125 Query: 134 KGVTHFYEP--LDAERMHRAAQCLLGENDFTSFRAVQCQSRTP--WRNVMHINVTRHGPY 189 F P L+ + M A L+GE+DF+SF A ++ P R + + + Sbjct: 126 TRRYAFQSPWTLNVQAMREGAAYLIGEHDFSSFCA-NSRAEMPDQARTITRLELAEENDQ 184 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 + + + + F+ +MVR + G+L+EVG + +L A+D+ + AK +GL LV Sbjct: 185 LRLIYEGSGFLRYMVRMMTGTLIEVGRGRLAPQDVQWMLQAQDKQICHFNAKPQGLTLVE 244 Query: 250 VDY 252 V Y Sbjct: 245 VYY 247 >UniRef50_UPI0001BC54DA tRNA pseudouridine synthase A n=2 Tax=Fusobacterium RepID=UPI0001BC54DA Length = 251 Score = 130 bits (327), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 131/249 (52%), Gaps = 11/249 (4%) Query: 12 IALGIEYDGSKYYGWQRQNEV---RSVQEKLEKALSQVAN---EPITVFCAGRTDAGVHG 65 + IEY+G++Y GWQR E +++Q K+E+ L+++ E ++V +GRTDAGVH Sbjct: 6 LRFSIEYEGTRYLGWQRLGEKQREKTIQGKIEQVLARLFALNPEEVSVIASGRTDAGVHA 65 Query: 66 TGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 Q+ + + + N LP DI + V + FH+RF A + Y Y I Sbjct: 66 KEQIANVHLPSGKSPQEIEEYCNQYLPEDIRIFHAHFVEELFHSRFHAKTKEYHYEISLQ 125 Query: 126 RLRPAVLSKGVTHFYEP--LDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV 183 + P+V + VT +Y P LD E+M ++Q LGE+DF +F +++ ++ R + I + Sbjct: 126 K--PSVFHRNVT-WYCPMQLDIEKMKESSQYFLGEHDFIAFSSLKKTKKSTIRRIDRIEI 182 Query: 184 TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 ++ N F+ +M+R +VG+L+EVG + + I + +K R A A A+ Sbjct: 183 QETESGLLFRFVGNGFLQNMIRILVGTLIEVGEGKKTKEDIISIFQSKTRQKAGFLAPAK 242 Query: 244 GLYLVAVDY 252 GL L V Y Sbjct: 243 GLTLYKVYY 251 >UniRef50_C4DMY7 Pseudouridylate synthase n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DMY7_9ACTO Length = 300 Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 88/255 (34%), Positives = 134/255 (52%), Gaps = 16/255 (6%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + ++ L I YDG+ + GW Q R+V ++ ALS + +P + AGRTDAGVH TGQ Sbjct: 21 LVRLRLDICYDGTDFAGWAFQPGQRTVAGEVFTALSALFGQPEGLTVAGRTDAGVHATGQ 80 Query: 69 VVHFETTAL-----RKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIY 123 V H + A R W L LP D+ + + V +F+ARFSA +RRY Y + Sbjct: 81 VAHVDVPAAAWARYRDRPLWRL--RGILPPDVRITAITEVSSEFNARFSALSRRYVYRVA 138 Query: 124 NHRLRPAVLSKGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRAVQCQSR---TPWRNVM 179 + L + T + P+D + M+ AA L+GE+DF +F C+ R T R + Sbjct: 139 DTVWGVNPLRRLDTVAWPRPVDLDVMNAAATVLVGEHDFAAF----CKRREGATTVRALR 194 Query: 180 HINVTRHGPYVV-VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAA 238 + R + + A+AF H MVR++VG+++ VG + +W+A LL +R+ Sbjct: 195 TVRWDRDADGIARATVVADAFCHSMVRSLVGAMLAVGEGRRDAAWLAALLTRGERSGEVL 254 Query: 239 TAKAEGLYLVAVDYP 253 A A GL LV V++P Sbjct: 255 VAPANGLTLVEVEFP 269 >UniRef50_B5YGE4 tRNA pseudouridine synthase A n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=TRUA_THEYD Length = 254 Score = 130 bits (326), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 122/251 (48%), Gaps = 10/251 (3%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 I + I+YDG+ Y+GWQRQ + R++Q +E+ L ++ I + AGRTDAGVH GQV Sbjct: 4 IKMTIQYDGTNYFGWQRQRKGRTIQATIEECLRKIFQREIKIRGAGRTDAGVHALGQVAT 63 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 F+ +N+ LP DI + ++ V D FH + S + Y Y + Sbjct: 64 FKAELKMSLDILKKVLNSLLPNDIKIIKLENVEDSFHPQHSVKRKSYIYYLCFDEECSCF 123 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRA---VQCQSRTPWRNVMHI------- 181 + + V H+ LD M A G DFT+F V+ + RT M + Sbjct: 124 IQRYVWHYPWKLDLSLMEEALSLFTGTKDFTAFSGSTDVKNKIRTVHDFTMQLLTKLCFM 183 Query: 182 NVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAK 241 ++ +G ++ I+A+ F+ +MVRN+VG ++E+G I E + R TA Sbjct: 184 DMCLNGNFIKFRIEADGFLRYMVRNLVGCIIEIGKGKLRIESIQEAFESGKRPSTMQTAP 243 Query: 242 AEGLYLVAVDY 252 + GL+L V Y Sbjct: 244 SNGLFLEKVIY 254 >UniRef50_C8P3N2 Pseudouridylate synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3N2_ERYRH Length = 245 Score = 129 bits (325), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 82/246 (33%), Positives = 125/246 (50%), Gaps = 18/246 (7%) Query: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 ++YDGS + GWQ+Q R VQ ++E L+++ EPI + +GRTDAGVH GQV HF+ Sbjct: 8 VQYDGSMFKGWQKQPFGRCVQTEIESVLTRINKEPIHISGSGRTDAGVHALGQVFHFDNV 67 Query: 76 ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYII----YNHRLRPAV 131 + +N LP DI + + V +FHARF ++ Y Y + YN R V Sbjct: 68 VDMDEKQLFRALNTLLPNDIVITDIHPVEPNFHARFDVVSKTYEYRLNMGAYNLFERNYV 127 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRA-----VQCQSRTPWRNVMHINVTRH 186 + + LD + + A + +G +DFTSF A ++ Q RT N I H Sbjct: 128 Y-----QYNKALDLQAIRDAMESFVGTHDFTSFNATGLDEIENQVRT-ITNFDLIVSDDH 181 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 +V++ + F+ +MVR IV + + G+ IA++L A D+ + A GLY Sbjct: 182 LNFVII---GDGFLRYMVRMIVATCVACGSGKCDAHEIAQMLKAADKNSISYNIDACGLY 238 Query: 247 LVAVDY 252 L V+Y Sbjct: 239 LKKVNY 244 >UniRef50_B7A9H2 Pseudouridylate synthase n=2 Tax=Thermaceae RepID=B7A9H2_THEAQ Length = 259 Score = 129 bits (324), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 92/263 (34%), Positives = 128/263 (48%), Gaps = 16/263 (6%) Query: 11 KIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 +I L EYDG+ + G QRQ + +R+VQ +LEKAL + P V AGRTDAGVH Sbjct: 3 RILLLTEYDGTHFAGLQRQRQGLRTVQGELEKALPHIGALPKAV-AAGRTDAGVHALAMP 61 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 H + + +N LP D+ V + V DFHAR A R YRY + LRP Sbjct: 62 FHIDLQSPIPPEKVPEALNRLLPEDLKVVAAREVAPDFHARKDALWRAYRYRVL---LRP 118 Query: 130 ---AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT-- 184 +L V PLD + M A LLG ++F F + ++R R ++ + Sbjct: 119 HPSPLLRHRVLWLRRPLDLKAMEEALPLLLGRHNFLGF--AKEETREGVRELLEARLEVL 176 Query: 185 --RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 GP V K +F+ VR +VG+L+EVG + + +L DR LA +A A Sbjct: 177 EGEMGPEVRFYFKGRSFLRGQVRGMVGTLLEVGLGRRSPESVKAILETADRRLAGQSAPA 236 Query: 243 EGLYLVAVDYPDRYDLPKPPMGP 265 GLY + YP+ + KPP P Sbjct: 237 TGLYFLEAAYPE--EKLKPPAHP 257 >UniRef50_Q2LWJ8 Pseudouridylate synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LWJ8_SYNAS Length = 328 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/243 (34%), Positives = 118/243 (48%), Gaps = 3/243 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 K L +EYDG+ Y GWQ Q +S+Q L + + P+ + AGRTDAGVH QV Sbjct: 66 KYRLTLEYDGTGYSGWQMQKNAKSIQGTLLRVAEDLLGGPVDIQGAGRTDAGVHALAQVA 125 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 H ETT G+N LP I + V+ P FHAR SA R Y Y+I HR A Sbjct: 126 HLETTRRMPPRKLLEGLNDALPSSINILRVEEAPPLFHARHSAQLRSYLYVISGHRT--A 183 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWR-NVMHINVTRHGPY 189 + V + L+ ++M A++ G +DF+SF + + P R V + G Sbjct: 184 FGKRYVWWIRDHLELKKMQAASRLFAGFHDFSSFADKRMDKQAPTRVKVEATELHASGDL 243 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 + + + F+ MVR +VG ++EVG S + ++L + A TA GLYL Sbjct: 244 IFFRVTGSHFLWKMVRRMVGVMVEVGREKLDISDVRQMLKSYSPEPARLTAPPSGLYLER 303 Query: 250 VDY 252 V Y Sbjct: 304 VLY 306 >UniRef50_Q73S41 tRNA pseudouridine synthase A n=39 Tax=Actinomycetales RepID=TRUA_MYCPA Length = 251 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 89/236 (37%), Positives = 124/236 (52%), Gaps = 28/236 (11%) Query: 39 LEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNAN-------- 90 L++AL+ V P+ + AGRTDAGVH TGQV H + A+ + Sbjct: 5 LDEALTTVFRTPVRLRAAGRTDAGVHATGQVAHLDVPGTALPNAYPRAPHVGEAEFGPLL 64 Query: 91 ------LPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP-AVL---SKGVTHFY 140 LP D+ V + P F ARFSA R Y +Y P VL ++ VT + Sbjct: 65 RRLGRFLPTDVRVVDITRAPAGFDARFSALRRHY---VYRLSTAPWGVLPQQARYVTAWP 121 Query: 141 EPLDAERMHRAAQCLLGENDFTSFRAVQCQSR---TPWRNVMHINVTRHGPYVVVDIKAN 197 PLD E M A++ LLG +DF +F C+ R T R++ ++ TR G + + A+ Sbjct: 122 RPLDVEAMAAASRDLLGLHDFAAF----CRHRENATTIRDLQRLDWTRDGDLITARVSAD 177 Query: 198 AFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYP 253 AF MVR++VG+L+ VG + +P SW ELL+A +R+ ATA A GL LV VDYP Sbjct: 178 AFCWSMVRSLVGALLAVGENRRPVSWCRELLSATNRSSDYATAPAHGLTLVGVDYP 233 >UniRef50_Q01WL4 tRNA pseudouridine synthase A n=3 Tax=Acidobacteria RepID=TRUA_SOLUE Length = 240 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 124/245 (50%), Gaps = 10/245 (4%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +I + + YDG ++GWQ Q + ++Q LE+ + + +P+ V +GRTDAGVH QV Sbjct: 3 RIRIYLAYDGGPFHGWQVQPGLATIQGILEEIVGGMEGKPVHVAGSGRTDAGVHALAQVA 62 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 F VN LP I + + V DFH RF A A+ Y Y ++ + Sbjct: 63 AFSIENPIPVENLRRAVNRLLPPAIRILCAEEVQADFHPRFDAVAKTYEYRMFRDEVCSP 122 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAV---QCQSRTPWRNVMHINVTRHG 187 V H PLD RM A+ GE+DFT F A + ++ R + + R Sbjct: 123 FEWPYVYHHPYPLDEARMATLARAFEGEHDFTPFAASDARDAEGKSKVRTIFSSTLDRTP 182 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 +V ++ + F+ HMVRNIVG+L+E G N IA+L + R+ ATA A+GL+ Sbjct: 183 QRLVYRVRGSGFLKHMVRNIVGTLIEAGRGN-----IADLNSLPARS--GATAPAKGLFQ 235 Query: 248 VAVDY 252 V+V+Y Sbjct: 236 VSVEY 240 >UniRef50_UPI00016BFD9D tRNA pseudouridine synthase A n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016BFD9D Length = 259 Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/250 (30%), Positives = 130/250 (52%), Gaps = 16/250 (6%) Query: 16 IEYDGSKYYGWQRQ-------NEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + Y G++Y G+ RQ + ++++ +LE A+ ++ + + + AGRTDAGVH Q Sbjct: 13 VAYKGTRYNGFARQAGDKVVGSGIQTISAELELAIEKITQQQVRIVGAGRTDAGVHALAQ 72 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V ++ L +N LP DI ++ ++ + FH FS + YRY I N + Sbjct: 73 VCIANIDTQIGNSGLLLALNNKLPVDIVIKSIEDAEEGFHPTFSGKRKMYRYQILNTTVS 132 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQC----QSRTPWRNVMHINVT 184 +++ V HF LD E M AA L+G +DF +F A + + + R + I V Sbjct: 133 CPFVAEFVYHFPHKLDVEEMKVAAXELVGTHDFRAFCAAKSNVLKKGSSTVRTIFDIVVA 192 Query: 185 RHGPYVV-VDIKANAFVHHMVRNIVGSLMEVG-AHNQPESWIAELLAAKDRTLAAATAKA 242 R ++ +D+ + F+++MVR I G+L++ G P IA++L ++R A TA A Sbjct: 193 RGDDEIIKIDVTGDGFLYNMVRIIAGTLIDKGLGRGMP---IAKILEMRERKNAGKTAPA 249 Query: 243 EGLYLVAVDY 252 GL ++ V+Y Sbjct: 250 SGLTMIGVEY 259 >UniRef50_D1AG36 Pseudouridylate synthase n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AG36_SEBTE Length = 244 Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 124/245 (50%), Gaps = 8/245 (3%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 I + EYDGSK+ G+QRQ ++VQ +E+ + NE + + +GRTD GVH GQV + Sbjct: 4 IKIVYEYDGSKFSGFQRQLNKKTVQGSIEEVIKNYFNEEVNLLSSGRTDKGVHALGQVSN 63 Query: 72 -FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 F ++ D + +N L G I V K DFHARFSA R Y YI+ +L+ Sbjct: 64 FFMEKSISPDIIKGI-LNRALSGKIRVTDAKEADSDFHARFSAKTRTYLYIM---KLKDE 119 Query: 131 VL---SKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + S V+ + E++ + + +G ++F SFR ++ P R + +I Sbjct: 120 ITPFESSYVSALDGKIIPEKLQKIMEPFIGRHNFDSFRKKDKDNKNPEREINNIRCYEED 179 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + ++I+ +F+ M+R ++GS + V + +I + L D A +EGLYL Sbjct: 180 KRLFIEIEGKSFLKTMIRIMIGSALAVYFEKRNPDYICDKLDNPDSDGEKILAPSEGLYL 239 Query: 248 VAVDY 252 V+Y Sbjct: 240 YKVNY 244 >UniRef50_A6GZH6 Pseudouridylate synthase n=2 Tax=Bacteroidetes RepID=A6GZH6_FLAPJ Length = 250 Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 4/237 (1%) Query: 18 YDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETTAL 77 Y+G++Y+GWQ Q SVQE L K S + E I + AGRTDAGVH HF+T Sbjct: 9 YNGTQYHGWQYQPNATSVQETLNKVFSTLLQEKIDIMGAGRTDAGVHAKQMYGHFDTDIS 68 Query: 78 RKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVT 137 +A + N+ LP DI + + V + HARF AT+R Y Y I ++ V + + Sbjct: 69 IDNAKFIHKANSFLPKDIVIFNIIPVHNQAHARFDATSRTYNYHISTYK---NVFTNNLA 125 Query: 138 HF-YEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKA 196 + + +D M+ AA+ LL DF F T + + ++ I A Sbjct: 126 WYSSKKIDVIAMNEAAKVLLKFTDFKCFSKTNTDVNTYNCKITEAFWSIEKEQLIFTITA 185 Query: 197 NAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYP 253 + F+ +MVR IVG+L+ +G H +++ +++R A + A GL+L ++YP Sbjct: 186 DRFLRNMVRAIVGTLINIGLHKITIENFIQIIESQNRENAGFSVPAHGLFLTNIEYP 242 >UniRef50_A0B7V0 tRNA pseudouridine synthase A n=1 Tax=Methanosaeta thermophila PT RepID=TRUA_METTP Length = 267 Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 93/248 (37%), Positives = 126/248 (50%), Gaps = 28/248 (11%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQ--VANEPITVFC-AGRTDAGVHGTG 67 KIAL I Y G +YYG+QRQ +R+V+ + AL + VAN FC AGRTD GV G Sbjct: 2 KIALKIAYLGDRYYGFQRQPGLRTVESVMRDALLRIGVANGD---FCYAGRTDRGVSALG 58 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTV-PDDFHARFSATARRYRYIIYNHR 126 QV+ F R A+ +N+ LP D+ W + V P F AR+SA R YRY + Sbjct: 59 QVIDFWIEEDRAYLAFPRVINSLLPSDVWA-WARAVAPVGFSARWSALWREYRYFL---- 113 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 F +D + AA L+G +DF +F + + R ++ I+V H Sbjct: 114 ------------FSPDIDLSAVREAAGHLVGTHDFRNFSMSKVDTV---RRIISIDVNAH 158 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 VV D++A F+ +MVR IVG+L +G +P WI ELL A TA EGL Sbjct: 159 CGIVVFDVRAEGFIWNMVRRIVGALELIGIGEKPVDWILELLDPST-PHGAPTAPPEGLM 217 Query: 247 LVAVDYPD 254 L+ V Y D Sbjct: 218 LMDVGYSD 225 >UniRef50_B6YQE4 tRNA pseudouridine synthase A n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=TRUA_AZOPC Length = 249 Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 73/242 (30%), Positives = 132/242 (54%), Gaps = 8/242 (3%) Query: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 + Y+G Y GWQ Q +VQ+++++ LS + + +T+ AGRTDAGVH HF+ Sbjct: 8 LAYNGRNYCGWQIQPNGITVQQRIQQCLSILLRKSVTIIGAGRTDAGVHANLMTAHFDWE 67 Query: 76 ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKG 135 + + T +N LP DI + + V + HARF A +R+Y+Y I ++ P ++ Sbjct: 68 EILSTTSLTKRLNGILPCDILIYKIIPVKKNAHARFDAISRKYKYYI-TYQKNP-FRNEQ 125 Query: 136 VTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVD-- 193 + +PL+ M+ A+ L +DFTSF + +RT NV I+ +D Sbjct: 126 LFRLKQPLNKHLMNEASNILSEYSDFTSFCKLHSNTRT---NVCRISKAEWNTVQGIDIF 182 Query: 194 -IKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 IKA+ F+ +MVR+IVG+++++G + + +++ +K+ + ++ A L+L ++Y Sbjct: 183 TIKADRFLRNMVRSIVGTMIDIGKNKLSITDFRKIIESKNHIMLKSSVPAHALFLTDIEY 242 Query: 253 PD 254 P+ Sbjct: 243 PN 244 >UniRef50_D1XYC0 Pseudouridylate synthase n=2 Tax=Prevotella RepID=D1XYC0_9BACT Length = 255 Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 86/252 (34%), Positives = 122/252 (48%), Gaps = 15/252 (5%) Query: 14 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFE 73 + + YDGSKY+GWQ Q SVQE LEKA+S + EPI + AGRTDAGVH V HF+ Sbjct: 6 ITLSYDGSKYHGWQIQPNGSSVQETLEKAISVLLREPIAIIGAGRTDAGVHARMMVAHFD 65 Query: 74 TTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 T +N LP DI+V ++ V +D HARFSA+ R Y Y Y H + Sbjct: 66 FTGSVDCHQMVYRLNRLLPHDISVSKIEPVTNDLHARFSASRRTYHY--YLHTQKNIYQR 123 Query: 134 KGVTHFYEPLDAERMHRAAQCLLGENDFTSF-------RAVQCQ-SRTPWRNV-----MH 180 + + LD + M+ AAQ L+G DF F + C+ + W + M Sbjct: 124 QYSCYMSYALDFDLMNEAAQYLIGTKDFKCFCKAGADVKTTICELTEARWVPIRAELSMP 183 Query: 181 INVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATA 240 ++ I AN F+ +MVR +VG+L++VG ++ R+ A + Sbjct: 184 LSSKEQPTDWCFIISANRFLRNMVRAVVGTLVDVGRGKLSLEAFKAIVDGGTRSDAGESM 243 Query: 241 KAEGLYLVAVDY 252 L+L V Y Sbjct: 244 PGNALFLWEVIY 255 >UniRef50_B5HPZ6 Pseudouridylate synthase n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5HPZ6_9ACTO Length = 289 Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 91/264 (34%), Positives = 140/264 (53%), Gaps = 14/264 (5%) Query: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVANEPITVF---CA 56 MSD+ QP ++ L + YDGS + GW +Q R+VQ ++E AL V + A Sbjct: 1 MSDEVQPGDVRVRLDLSYDGSDFSGWAKQAGGRRTVQGEIEDALRTVTRSKDVTYELTVA 60 Query: 57 GRTDAGVHGTGQVVHFETT----ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFS 112 GRTDAGVH GQV H + A +D + LP D+ V ++ P F+ARF+ Sbjct: 61 GRTDAGVHARGQVAHVDLPEGLWAEHRDKLLKR-LAGRLPKDVRVWSLREAPAGFNARFA 119 Query: 113 ATARRYRYIIYNH--RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQ 170 A RRY Y + + + P + + + H +E LD M AA+ L+GE+DF ++ A + + Sbjct: 120 ALWRRYVYRVGDQPGGVDPLLRNHVLWHDWE-LDVAVMDAAAKSLVGEHDFAAY-AKRRE 177 Query: 171 SRTPWRNVMHINVTRHGPYVV-VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLA 229 T R ++ V R VV ++++A+AF H+ VR++VG+L+ VG ++ W ++L Sbjct: 178 GATTIREILDFGVRRRADGVVEIEVRADAFCHNQVRSMVGALLFVGDGHRGVEWPRKVLD 237 Query: 230 AKDRTLAAATAKAEGLYLVAVDYP 253 A R A + GL L V YP Sbjct: 238 AGVRDSAVHVVRPHGLTLEEVAYP 261 >UniRef50_Q0SPF2 tRNA pseudouridine synthase A n=21 Tax=Borrelia RepID=TRUA_BORAP Length = 246 Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 136/244 (55%), Gaps = 3/244 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 KI I YDGS Y+G+Q Q ++Q ++EKAL ++ + I + +GRTD GVH Q++ Sbjct: 3 KILAEIAYDGSMYHGFQIQPTKPTIQGEIEKALMKINKKKIKIHSSGRTDKGVHAKRQII 62 Query: 71 HFETTALRKDAAWTLGVNANL--PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 F+ + +NA L PG I + +K V + FH RF+A R+Y Y I N Sbjct: 63 TFDININIQLNNLKKALNAILLKPG-IKILKLKHVKNSFHPRFNAQKRKYSYCILNSDNY 121 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 S + + L+ +++ A+ L+G +DFT+F ++ +S++ +R++ + G Sbjct: 122 YPWESYQAYYVNKKLNINNLNQMAKILIGNHDFTTFSCIKDKSKSKFRHIHSAKFKKKGK 181 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Y++ +I ++F+ MVR+I+G+++++ N+ S +L +K+R LA TA A L+L Sbjct: 182 YIIFEIIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALFLD 241 Query: 249 AVDY 252 V Y Sbjct: 242 KVYY 245 >UniRef50_Q72DL8 tRNA pseudouridine synthase A n=4 Tax=Desulfovibrio vulgaris RepID=TRUA_DESVH Length = 297 Score = 126 bits (317), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 130/288 (45%), Gaps = 46/288 (15%) Query: 11 KIALGIEYDGSKYYGWQRQNEV-----RSVQEKLEKALSQVANEPITVFCAGRTDAGVHG 65 ++ L I Y G+ +GWQ Q R+VQ LE +S++A E + + AGRTDAGVH Sbjct: 3 RLRLTIAYKGTDLHGWQVQEHATRPRPRTVQGVLEPIVSRMAGEQVRLHAAGRTDAGVHA 62 Query: 66 TGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIY-N 124 GQV H + + W +NA LP DI + V+ DDFHARF A +RY Y ++ Sbjct: 63 DGQVAHVDIPDHKLGVDWQKAINAQLPDDICILDVRRAADDFHARFDALGKRYTYRLWLT 122 Query: 125 HRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSF-----------RAVQCQSRT 173 R P L G PLD M RAA+ L G +DF +F R V R Sbjct: 123 RRFIPPKL-HGQVWATGPLDVYAMDRAARHLAGTHDFAAFQNQGTDVTSTVRTVHAIRRC 181 Query: 174 P------------------WRNV-MHIN---------VTRHGPYVVVDIKANAFVHHMVR 205 P WR H + + G +V + + F+ MVR Sbjct: 182 PSGTLPAGALLTCSEPYTSWRCTGTHPDQPPATAGHPLAGIGLELVWSFEGDGFLKQMVR 241 Query: 206 NIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYP 253 N++G L+ VG + ++A DR+ A ATA A GL L V YP Sbjct: 242 NMMGLLVAVGRGALAADDVPGIMATLDRSRAPATAPACGLTLSEVYYP 289 >UniRef50_C7RE26 Pseudouridylate synthase n=3 Tax=Anaerococcus RepID=C7RE26_ANAPD Length = 246 Score = 126 bits (317), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 118/245 (48%), Gaps = 1/245 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + L YDG+ + G+Q Q + RSV+E+L A+ +V E + GRTD+GVH Sbjct: 2 IRNVLLETAYDGTNFAGFQYQKDERSVEEELRNAIRKVTGEDNRIVSCGRTDSGVHARSH 61 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V+F T + A++ + +LP DI K V DFHARFS ++ Y+Y+IY RL Sbjct: 62 FVNFLTASNISPKAFSFHIQPHLPDDILALSSKEVSLDFHARFSCKSKLYKYVIYRGRLM 121 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSF-RAVQCQSRTPWRNVMHINVTRHG 187 V PLD +R+ + + L GE+DF F R + R + G Sbjct: 122 YPVFRNYKEEISYPLDLKRLDQGLKILEGEHDFRLFMREDKKLKINTVRKIDEAYFEEEG 181 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + + K +F+H+ VR +VGSL+E+ + + A A+GLYL Sbjct: 182 DDLAIYFKGESFLHNQVRIMVGSLIELSRGRLSLDDYRKFFDKDNNKRANPALGAQGLYL 241 Query: 248 VAVDY 252 V++ Sbjct: 242 RRVEF 246 >UniRef50_A6FXP9 Pseudouridylate synthase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FXP9_9DELT Length = 285 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 100/284 (35%), Positives = 141/284 (49%), Gaps = 42/284 (14%) Query: 14 LGIEYDGSKYYGWQRQNE----VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 L + YDG+ ++G+ RQ+ +R++Q LE+ALS + +PI A RTDAGVH GQ+ Sbjct: 5 LRVAYDGTDFHGFARQDNGGQPLRTIQGCLEQALSTLYKQPIRTRGASRTDAGVHARGQL 64 Query: 70 VHFETTALRKDAAWTLGVNANLPGDI--AVRWV--KTVPDDFHARFSATARRYRYIIYNH 125 V F+ LG+ ANLP DI + W+ + + RF + YRY Sbjct: 65 VAFDPPFAIPARGLLLGLAANLPADIIASAAWLAEDVEGEPLNPRFHTRGKLYRY----- 119 Query: 126 RLRPAVLSKGVTHFYE-----PLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMH 180 RLRP L ++ YE P+D M AA G +DF FRA CQ+++ R V Sbjct: 120 RLRPVSLRDPLSARYEWHLPRPIDVAAMQAAAPRFAGTHDFAGFRASDCQAKSTTRRVRS 179 Query: 181 INVTR----------------HGP----YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQP 220 + V GP V +D++ +AF+ +MVR +VG+L+ VG Sbjct: 180 VIVNVETLAELDPLAGQRGRIEGPAAPARVTIDVRGDAFLKNMVRIMVGTLVGVGRGQFG 239 Query: 221 ESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDLPKPPMG 264 I E+LA+ DRT A TA A GL LV V +P+ P PP G Sbjct: 240 AERIDEVLASGDRTRAGVTAPACGLTLVEVLWPE----PWPPSG 279 >UniRef50_Q12VJ7 tRNA pseudouridine synthase A n=5 Tax=Archaea RepID=TRUA_METBU Length = 275 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/247 (33%), Positives = 128/247 (51%), Gaps = 23/247 (9%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQ--VANEPITV--FCAGRTDAGVHGT 66 ++AL I Y GS ++G Q Q +V+ +L K L + + +P T +GRTD+GVH Sbjct: 2 RVALKIAYIGSNFHGSQVQLNDPTVEGELFKVLKELGIMEDPRTANFISSGRTDSGVHAM 61 Query: 67 GQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 GQVV F+T A + A +N+ LPG I VP++F R A +R YRYI+Y Sbjct: 62 GQVVAFDTDA--PNLAMPRVINSKLPGTIWAWAHAIVPENFDPRRHALSRSYRYILYG-- 117 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 E D ++ A++ LLG +DF++F + +T R V I++ Sbjct: 118 --------------EQFDISKIRSASKLLLGSHDFSNFSTSRGSKKTV-RIVKRIDIRVS 162 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G +D++AN+F+ +MVR IV +LM VG+ + E W+ +L + A GL Sbjct: 163 GNLTRIDVEANSFLWNMVRKIVAALMMVGSGVRDEEWLGHMLDPESYEEGLEPAHGYGLV 222 Query: 247 LVAVDYP 253 L+ V+YP Sbjct: 223 LMDVNYP 229 >UniRef50_Q2NIY3 tRNA pseudouridine synthase A n=4 Tax=Candidatus Phytoplasma RepID=TRUA_AYWBP Length = 243 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 132/255 (51%), Gaps = 21/255 (8%) Query: 6 QPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHG 65 Q YK+ L YDG+ Y G+Q+Q + ++VQ+ EKAL ++ ++ I F A RTD GVH Sbjct: 2 QHFFYKLILS--YDGTFYCGYQKQPQKKTVQQTFEKALKKMTHQNIPTFAASRTDKGVHS 59 Query: 66 TGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYII--- 122 GQ +HF+TT K + +N LP DI VR + +FHAR+SA ++ Y+Y+ Sbjct: 60 QGQTLHFQTTFSLKPKHFQKTLNYLLPPDIRVRQMHFATPNFHARYSAKSKIYQYVFSKK 119 Query: 123 ----YNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNV 178 +NH + F + D ++ +A + + G ++F +F + + Q + + + Sbjct: 120 PLNAFNHHFQI---------FADKFDFVKITKALKFIEGTHNFFAFTS-ETQPKNFSKTI 169 Query: 179 MHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHN-QPESWIAELLAAKDRTLAA 237 ++ ++ N F+ +M+R +VGSL+E+G + E + A LL K + A Sbjct: 170 FQASLKETVHKYILVFHGNGFLKYMIRFLVGSLIEIGKNKFSLEQFQAMLLGNKTKK-AT 228 Query: 238 ATAKAEGLYLVAVDY 252 A A+ L L + Y Sbjct: 229 LLAPAKALVLKKIFY 243 >UniRef50_Q8R601 tRNA pseudouridine synthase A n=14 Tax=Fusobacterium RepID=TRUA_FUSNN Length = 247 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/243 (33%), Positives = 123/243 (50%), Gaps = 5/243 (2%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 I + YDGS YYG+QRQ +VQ ++EK L V E I + AGRTD GVH QV + Sbjct: 8 IKIEFRYDGSSYYGFQRQPNKITVQGEIEKVLRIVTKEEINLISAGRTDRGVHANHQVSN 67 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYII-YNHRLRPA 130 F T++ + + LP DI + V+ V ++F+AR +A R Y YII + A Sbjct: 68 FYTSSNIPIEKYKYLLTRALPNDIDILSVEEVDENFNARHNAKMREYIYIISWEKNPFEA 127 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP-Y 189 K V E + AE++ + +G +DF +FR C S+ R + I V G Sbjct: 128 RYCKFVK---EKIVAEKLEKIFSDFIGVHDFKNFRLSDCVSKVTVREIYQIEVKYFGENK 184 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 + + IK +AF+ VR +VG+ +E+ E+ I +L + +AEGLYL Sbjct: 185 IKIYIKGSAFLKSQVRIMVGTALEIYYGRLLENHIRLMLNDFTKEYKKNLVEAEGLYLNK 244 Query: 250 VDY 252 ++Y Sbjct: 245 IEY 247 >UniRef50_Q72I65 tRNA pseudouridine synthase A n=2 Tax=Thermus thermophilus RepID=TRUA_THET2 Length = 253 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/249 (34%), Positives = 119/249 (47%), Gaps = 8/249 (3%) Query: 11 KIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 ++ L EYDG+ + G QRQ +R+VQ +LE+AL + P V AGRTDAGVH Sbjct: 3 RLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGIGALPKAV-AAGRTDAGVHALAMP 61 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 H + + +N LP D+ V + V DFHAR A R YRY I Sbjct: 62 FHVDVESAIPVEKVPEALNRLLPEDLKVVGAREVAPDFHARKDALWRAYRYRILVRPHPS 121 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT----R 185 +L PLD E M A LLG ++F F + ++R R ++ + Sbjct: 122 PLLRHRALWVRRPLDLEAMEEALSLLLGRHNFLGF--AKEETRPGERELLEARLQVAEGE 179 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 G V + + +F+ VR +VG+L+EVG +P + +L DR LA TA A GL Sbjct: 180 AGLEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPESLKAILKTADRRLAGPTAPAHGL 239 Query: 246 YLVAVDYPD 254 Y V YP+ Sbjct: 240 YFVEAAYPE 248 >UniRef50_A8Z5T1 Pseudouridylate synthase n=4 Tax=Flavobacteriales RepID=A8Z5T1_SULMW Length = 250 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 125/248 (50%), Gaps = 16/248 (6%) Query: 14 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFE 73 L I Y G+ +YGWQ Q + SVQE +E LS + + I + AGRTD GVH HFE Sbjct: 5 LEISYHGASFYGWQIQKKNISVQETIENCLSFLLKKSIKIIGAGRTDTGVHAIQMFAHFE 64 Query: 74 --TTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYII------YNH 125 + + N+ LP +I + + TV HARF+A +R Y Y I ++ Sbjct: 65 FYEKKILLYRNFLFKFNSFLPLNIKIINIFTVKKKIHARFTAISRVYEYRISLGKNPFSL 124 Query: 126 RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR 185 + LSK + + +++ A+ L D++SF +C +T N+ + Sbjct: 125 DISWQWLSK------KKIKLNPLNKGAKILKKYKDYSSFCKKKCNYKTYICNIFNAKWHI 178 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 + +I+AN ++ +MVR+IVG+L+E+G +L AKDR + +A AK GL Sbjct: 179 KNNILYFNIEANRYLRNMVRSIVGTLIELGIGKITIKDFINILYAKDRNIISAPAK--GL 236 Query: 246 YLVAVDYP 253 +L ++YP Sbjct: 237 FLTKINYP 244 >UniRef50_UPI000050FF8C pseudouridylate synthase I n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FF8C Length = 284 Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 96/273 (35%), Positives = 138/273 (50%), Gaps = 38/273 (13%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 ++I LG Y G+ ++GW +Q +R+VQ+ LE LS++ + AGRTDAGVH QV Sbjct: 4 FRIDLG--YRGTDFHGWAKQPGLRTVQDSLEAGLSRITGAEVATIVAGRTDAGVHARRQV 61 Query: 70 VHFETTALRKDAAWTLGVNANLPG------------------DIAVRWVKTVPDDFHARF 111 VH + L ++ L ++ P DI + V VP+DF ARF Sbjct: 62 VHID---LAEEGIEKLIGKSSRPAEAALLSRLRGVLTVDDTDDIVIHAVSEVPEDFDARF 118 Query: 112 SATARRYRYIIYNHR--LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQC 169 SA R Y+Y + + R + P + H E LDAE M AA+ G +DF F C Sbjct: 119 SALWRTYQYRLADRRSFIDPLLTPVTPRHKGE-LDAEAMAEAAREAQGLHDFIPF----C 173 Query: 170 QSR---TPWRNVMHINVTRHGPYVV-VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIA 225 + R T R + + VTR V+ +D++A+AF HHMVR +VG L++VG+ P + A Sbjct: 174 KPREGATTIRTLHELEVTRDQEAVITIDLRADAFCHHMVRALVGGLIKVGSGTWPVTRPA 233 Query: 226 ELLAAKDR----TLAAATAKAEGLYLVAVDYPD 254 ELL D + + A GL L V YP+ Sbjct: 234 ELLTEADSGVDPDVPMFVSPAHGLVLTGVGYPE 266 >UniRef50_B5JG47 Pseudouridylate synthase n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JG47_9BACT Length = 243 Score = 123 bits (309), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 125/238 (52%), Gaps = 6/238 (2%) Query: 18 YDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETTAL 77 YDG+ Y GWQ+Q+ SVQ+ +E+ L Q+ E + + +GRTDAGVH QV HF+ Sbjct: 9 YDGTNYAGWQKQSGQISVQQVIEEVLEQLLKEKVAIHGSGRTDAGVHALEQVFHFDYDWR 68 Query: 78 RKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVT 137 + +++ LP +I V V ++FHARFSA ++RY+Y + P + Sbjct: 69 HGGESLVKALHSKLPKEIRVESATEVGEEFHARFSAVSKRYQYRLALGEANPFQWAY-CW 127 Query: 138 HFYEPLDAERMHRAAQCLLGENDFTSF---RAVQCQSRTPWRNVMHINVTRHGPYVVVDI 194 LD + A +G +DF +F R ++ +S R ++ V++ YV + Sbjct: 128 PVSRKLDLNLVKEAMDRFVGTHDFGAFAANRGIEYESTE--RKMLATGVSQDTEYVGLSF 185 Query: 195 KANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 +A+ F++ MVR++VG+++ VG S I LL + R+ A A+GL+L V Y Sbjct: 186 QADGFMYKMVRSLVGAVVNVGLGRMQVSEIERLLESAVRSPMVQAAPAKGLFLEKVFY 243 >UniRef50_B3DQE2 tRNA pseudouridine synthase A n=12 Tax=Bifidobacteriaceae RepID=TRUA_BIFLD Length = 303 Score = 123 bits (308), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 92/288 (31%), Positives = 134/288 (46%), Gaps = 50/288 (17%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQV-------ANEPITVFCAGRTDAGV 63 ++ + + YDG +YGW +Q +R+VQ +E AL +V A EP+ + AGRTD GV Sbjct: 3 RLRIDLAYDGGGFYGWAKQPNLRTVQGTIEDALHKVLRVPTDDAAEPLRLTVAGRTDTGV 62 Query: 64 HGTGQVVHFETT-----------ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFS 112 H + QV H + + + A T + A LP DI + + P F ARFS Sbjct: 63 HASHQVAHLDVSDEVLNRCVGHMTIPVTEALTRRLKAVLPSDIVIHGIAVAPVGFDARFS 122 Query: 113 ATARRYRYIIYNH------RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSF-- 164 A R Y Y + + RLR VL+ E LD E M+RAA +G +DF SF Sbjct: 123 ALERTYVYRVADRSSEVDPRLRGCVLT-----VDEALDLELMNRAASLTIGLHDFGSFAT 177 Query: 165 --------RAVQCQ--SRTPWRNVMHINVTRHGPY---------VVVDIKANAFVHHMVR 205 R V+ R P ++ + H Y VV I A+AF +MVR Sbjct: 178 PNPGGTTIREVKTAYWRRVPITPLVPDEMASHEAYRTPSLESGLVVFTIVADAFARNMVR 237 Query: 206 NIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYP 253 ++VGS ++VG+ + W A +A R ++ +GL L + YP Sbjct: 238 SLVGSCIKVGSGRKSLEWFAGKMAEPVREGSSGPIAPQGLTLEHIAYP 285 >UniRef50_Q2S4S9 tRNA pseudouridine synthase A n=2 Tax=Rhodothermaceae RepID=TRUA_SALRD Length = 265 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 94/264 (35%), Positives = 136/264 (51%), Gaps = 12/264 (4%) Query: 8 PVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 P Y++ +EYDG+ ++GWQ Q V +VQ LE+A+ V V +GRTDAGVH G Sbjct: 2 PRYRLL--VEYDGTDFHGWQIQPTVPTVQGALEEAVDTVVGTACRVTGSGRTDAGVHARG 59 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QV H + R +N P +AVR V+ PDDFHAR+ A RRY Y ++ Sbjct: 60 QVAHVDLPETRDPYRLRGSLNGLTPDAVAVRRVERAPDDFHARYDARRRRYHYHLHTQ-- 117 Query: 128 RPAVLSKGVTHFYEPL-DAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMH---INV 183 P L + P+ D R+ A LLG ++F+SF Q ++ + H ++ Sbjct: 118 -PCALGRRARTPVRPVPDFGRIRAATPDLLGRHNFSSFCLTQSETENRVCTLTHLRWVDE 176 Query: 184 TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 R G + V++ F+H MVR +VG+L+E+G + + +LAA+DR A + E Sbjct: 177 ARRGCW-RVEVVGTRFLHGMVRALVGTLVEIGHEKRAADALPAVLAARDRRAAGPSMPPE 235 Query: 244 GLYLVAVDY--PDRYDLPKPPMGP 265 GL L AV Y P D P P+ P Sbjct: 236 GLVLEAVRYEQPLFDDGPGDPLVP 259 >UniRef50_C9RMQ6 Pseudouridylate synthase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMQ6_FIBSS Length = 250 Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/247 (34%), Positives = 119/247 (48%), Gaps = 12/247 (4%) Query: 16 IEYDGSKYYGWQRQN---EVR--SVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 EY GS +YGWQ QN ++R +VQ LE+ALS PI V +GRTD GVH GQ V Sbjct: 7 CEYLGSAFYGWQEQNCGGKLRFVTVQSTLEEALSTALRAPIRVVGSGRTDTGVHARGQCV 66 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+ VN I +R ++ DF+AR+ A R Y+Y I+ RP Sbjct: 67 HFDFDGELDPQKVVRSVNGLTKRLIRIRDLEPCASDFNARYDAVLRYYQYTIFT---RPV 123 Query: 131 VLSK--GVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 L + G LD E M R AQ LGE+DF F + ++ + + R Sbjct: 124 ALMRDFGWECGSLNLDIEAMGREAQSFLGEHDFIDFCIPRNDGKSTLCTLSEFRLERLND 183 Query: 189 Y-VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + + IK N F+H VR +VG+L +VG PE + ++ K+ A +GL L Sbjct: 184 WSCMFHIKGNRFLHRQVRAMVGTLFDVGRGRYPEGTVNQIF-EKNFKGERTWAPPQGLVL 242 Query: 248 VAVDYPD 254 V+Y D Sbjct: 243 ENVEYRD 249 >UniRef50_C7ND49 Pseudouridylate synthase n=3 Tax=Leptotrichia RepID=C7ND49_LEPBD Length = 251 Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 72/241 (29%), Positives = 122/241 (50%), Gaps = 4/241 (1%) Query: 17 EYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETTA 76 +YDGSK+ G+QRQ +++VQ ++EK +S+ + I + +GRTD GVH QV +F Sbjct: 11 QYDGSKFCGFQRQMGIKTVQGEIEKVISKTFFQNINMISSGRTDKGVHAIEQVSNFMIDQ 70 Query: 77 LRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGV 136 A +N L G+I + ++ + + F++RF A R Y YI+ + + Sbjct: 71 NIPLNAIKRQLNKRLKGEIKILDIEEMDEKFNSRFDAQNRTYLYIMKVEDEITPFETNYI 130 Query: 137 THFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV--TRHG--PYVVV 192 T E +D ++ + +G++DF+SF R P R + IN ++G + + Sbjct: 131 TGIKEMIDIDKFQKIMLEFIGKHDFSSFMKKDKAYRNPVREIFFINCYYDKNGKEKQINI 190 Query: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 +I N F+ MVR ++GS + V + +++I + L D A +EGLYL V Y Sbjct: 191 EICGNGFLKTMVRIMIGSALAVYFGKEEKNYIKKKLENPDADGKKILAGSEGLYLYKVSY 250 Query: 253 P 253 Sbjct: 251 E 251 >UniRef50_B8JBC1 Pseudouridylate synthase n=4 Tax=Anaeromyxobacter RepID=B8JBC1_ANAD2 Length = 272 Score = 120 bits (301), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 92/253 (36%), Positives = 120/253 (47%), Gaps = 14/253 (5%) Query: 13 ALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHF 72 AL + YDG ++ G+QRQ + +VQ+ LE+AL ++ + A RTDAGVH QVV F Sbjct: 7 ALRLAYDGGRFRGFQRQPGLPTVQQALEEALERLGVR-AQLHVAARTDAGVHALAQVVSF 65 Query: 73 ETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH---RLRP 129 A A G+N LP I V V FHAR SA AR Y Y++ LRP Sbjct: 66 SARAALDPVALRGGLNEGLPEGILVLDAARVGPSFHARGSAIARTYVYLVGAPPPVGLRP 125 Query: 130 AVLS----KGVTHFYE--PLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV 183 + + E PLDA M A +GE+DF F A + R R ++ V Sbjct: 126 YAWTLPDARAFPDLAEVPPLDAAAMREALGHAVGEHDFVGF-ARPGEQRGTVRTLLRAEV 184 Query: 184 TRHG--PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAK 241 G P V V ++ F+ MVRN+VG+ + G P I LLA + R A Sbjct: 185 IEAGWAPLVAVVLEGKGFLRAMVRNLVGTAVAAGLGRAPPDVIRTLLATRGR-YRGVRAP 243 Query: 242 AEGLYLVAVDYPD 254 GL L AV YPD Sbjct: 244 GWGLTLAAVRYPD 256 >UniRef50_A5KLX7 Pseudouridylate synthase n=3 Tax=Clostridiales RepID=A5KLX7_9FIRM Length = 260 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 118/255 (46%), Gaps = 17/255 (6%) Query: 14 LGIEYDGSKYYGWQRQNEV-RSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHF 72 L I YDG+ Y GWQRQ++ R++Q LE+ L + + +GRTDAGVH +GQ Sbjct: 6 LTIAYDGTNYQGWQRQSDTDRTIQGILEETLENCIGYQVQIDGSGRTDAGVHASGQTASV 65 Query: 73 ETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVL 132 A +T +N LP DI + V+ V + FHAR SA + Y Y I + Sbjct: 66 VLPGKVDTALFTEKMNGCLPPDIRILDVELVKNGFHARKSAVGKVYEYRIDTGIKQDVFT 125 Query: 133 SKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV--------- 183 K HF D RM AA L G + F + + +R+ R + I + Sbjct: 126 RKYSGHFPGEPDLARMREAAGYLTGTHFFAEYTDKK-DNRSVRRTIYSIMIRDERKDFLP 184 Query: 184 ------TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAA 237 +G +V+ F++HMVR + G+L+EVG + + E L DR+ A Sbjct: 185 CGKSDQIGNGNCIVIRYDGTGFLYHMVRILTGTLLEVGMRERTAESVKEALLTGDRSKAG 244 Query: 238 ATAKAEGLYLVAVDY 252 A A GL+L V Y Sbjct: 245 FLAPAGGLFLREVRY 259 >UniRef50_A1BFF0 tRNA pseudouridine synthase A n=10 Tax=Chlorobiaceae RepID=TRUA_CHLPD Length = 258 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/244 (34%), Positives = 121/244 (49%), Gaps = 7/244 (2%) Query: 12 IALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 I + IEYDG+ Y GWQRQ +VQ ++E+ LSQ+ E I + AGRTD GVH Q+ Sbjct: 12 IRITIEYDGTGYAGWQRQAGSFCTVQGEIERILSQILQEDIRLAGAGRTDKGVHARAQIA 71 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP- 129 F++ + +NA LP I + VP+ FHAR SA R YRY + R P Sbjct: 72 TFKSRSSLGPDRMVHSMNALLPNTIRISDPLVVPEGFHARHSAKEREYRYFV---REEPS 128 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWR-NVMHINVTRHGP 188 AVL + Y LD M+R A +LGE+DF+ F + + + RT V+ R Sbjct: 129 AVLGRFSGCSYGSLDLMSMNRVASYVLGEHDFSVF-SKETRDRTGCLCRVISCKWFRQRE 187 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + V+ I AN F+ MVR + +++ G E++ + T A GL+L Sbjct: 188 FFVLRISANRFLRSMVRYLAALMIDSGKGLLSPEEAREMIESGILTRQLVPAAPNGLFLW 247 Query: 249 AVDY 252 + Y Sbjct: 248 KITY 251 >UniRef50_A8SWG9 Pseudouridylate synthase n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SWG9_9FIRM Length = 271 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/263 (28%), Positives = 119/263 (45%), Gaps = 26/263 (9%) Query: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN------------------------EPI 51 YDG++Y+GW+ + +V+ ++E LS++ + + Sbjct: 8 FSYDGTRYHGWESKTNADTVEGRIEAVLSKMVDGDNGKTADVCRENMSADIRDTKTPAKV 67 Query: 52 TVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARF 111 + AGRTDAGVH V R +N LP DI V D FHAR Sbjct: 68 DIHGAGRTDAGVHARAMVASGRLNTNRTPDEIKDYLNRYLPADICALDVTVAGDRFHARL 127 Query: 112 SATARRYRYIIYNHRLRPAVLSKGVTHFYEP--LDAERMHRAAQCLLGENDFTSFRAVQC 169 +AT + Y Y +Y +P V + LD + M +AA L+G++DF SF Sbjct: 128 NATGKIYEYTLYVGLEKPVFDRNYVWCVPQGSVLDVDAMKKAASYLVGKHDFRSFCGNNK 187 Query: 170 QSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLA 229 ++ R + + + + G YV + N F+ +MVR + G+L+E+G + + E++ Sbjct: 188 MKKSTVRTIYDVEIVKEGDYVRMRFHGNGFLQNMVRILTGTLVEIGYGHMDAEHMPEIIV 247 Query: 230 AKDRTLAAATAKAEGLYLVAVDY 252 DR LA TA GL L+ V+Y Sbjct: 248 GMDRQLAGPTAPPHGLCLLKVEY 270 >UniRef50_A4SAH5 Pseudouridylate synthase n=4 Tax=Mamiellales RepID=A4SAH5_OSTLU Length = 286 Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 82/256 (32%), Positives = 129/256 (50%), Gaps = 16/256 (6%) Query: 13 ALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVAN---EPITVFCAGRTDAGVHGTGQ 68 AL I YDG +Y G+Q Q E V ++Q +LE+AL+++ E + + AGRTDAGVH GQ Sbjct: 19 ALKISYDGERYNGFQYQGEDVPTIQRELERALAKLTGIDRERLRLGAAGRTDAGVHARGQ 78 Query: 69 VVHF--ETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 V HF E + +N LP DI V FH+RF A+ + Y Y + + R Sbjct: 79 VAHFYCEKSLGEDLTRCQKAMNGMLPKDIRVDAFWEPHPLFHSRFHASGKTYHYYV-DAR 137 Query: 127 LRPAVLSKGVTH--FYEPLDAERMHRAAQCLLGENDFTSF----RAVQCQSRTPWRNVMH 180 + ++ H + P D E + +AAQ +G D+ F R + R R + Sbjct: 138 ATSSPFTRKYAHQVGWRPCDVELLRQAAQLFVGTMDYKGFCNTSRDKSNEDRNTTRTIRR 197 Query: 181 INVTRHGP---YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAA 237 +V + ++++ + F++ VRN+VG+L+ V + +++ L+ KDR+ A Sbjct: 198 FDVFEDAADDGLIRLEVEGDGFLYRQVRNMVGALLVVASGKHDLAYLRTLIETKDRSRAP 257 Query: 238 ATAKAEGLYLVAVDYP 253 A A GL+L V YP Sbjct: 258 MGAPARGLFLHEVFYP 273 >UniRef50_C7HSK8 Pseudouridylate synthase n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HSK8_9FIRM Length = 252 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 71/248 (28%), Positives = 119/248 (47%), Gaps = 1/248 (0%) Query: 8 PVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + I L I+YDGS + G+Q Q R+VQ++LE A+ +V E + +GRTD+GVH Sbjct: 2 TIQNILLKIQYDGSLFEGFQIQKNKRTVQKELEDAIRKVTGEENRIIASGRTDSGVHANE 61 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 ++F T + + + + LP DI K V +FHARFS + Y+Y+I ++ Sbjct: 62 MYINFLTAKIIRADKFHFHLKKYLPDDILALESKKVDKNFHARFSVKTKTYKYVISLDKI 121 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQS-RTPWRNVMHINVTRH 186 + + LD +++ + + L GE+DF +F + R + + Sbjct: 122 LHPIYRNYMEQITYKLDFDKLKQGMEILKGEHDFKAFMLSEKNDIINTIRKIDDCYFVLN 181 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 + + KA +F+H+ VR + GSL+E+ + A T KA GLY Sbjct: 182 ENRLYLYFKAESFLHNQVRIMAGSLIELSRGKISLDDFKYYFNKNNTRRANPTLKAGGLY 241 Query: 247 LVAVDYPD 254 L ++DY + Sbjct: 242 LDSIDYSN 249 >UniRef50_UPI0001C30ED3 tRNA pseudouridine synthase A n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C30ED3 Length = 261 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/240 (35%), Positives = 117/240 (48%), Gaps = 6/240 (2%) Query: 14 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN-EPITVFCAGRTDAGVHGTGQVVHF 72 L +EYDG + GW RQ R+V++ LE+AL+ V + + + AGRTDAGVH Q + Sbjct: 10 LTLEYDGRDFAGWARQPGRRTVEDALERALATVLRRDAVGLTVAGRTDAGVHAWAQEASY 69 Query: 73 ETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVL 132 E A +NA LP D+AV + P F AR AT+R YRY + R R A Sbjct: 70 EGPP-----AAPHRLNALLPDDVAVIDARPAPPGFSARHDATSRAYRYRVLVRRSRSAHE 124 Query: 133 SKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 + LD + + A L G +DFT+F + R VMH + G + Sbjct: 125 RGRALWWPHRLDRDALDACAAALAGTHDFTAFTPTETDHVRFQREVMHASWRADGDMLQF 184 Query: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 I+A+AF+ +M R +VG+++EV + LL R A TA GLYL V Y Sbjct: 185 SIEADAFMRNMNRVLVGTMLEVAGERRSVEQFTALLDGAPRDRAGVTAPPHGLYLAGVGY 244 >UniRef50_C7LK25 Pseudouridylate synthase n=2 Tax=Candidatus Sulcia muelleri RepID=C7LK25_SULMS Length = 270 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/271 (29%), Positives = 131/271 (48%), Gaps = 44/271 (16%) Query: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 I Y GS +GWQ Q + S+QE +E LS + + I + AGRTD GVH HF+ T Sbjct: 7 ISYKGSSLFGWQIQKKNLSIQETIETCLSFLLKKKIKIIGAGRTDTGVHAIQMFAHFDLT 66 Query: 76 A-------------LRKDAAWTL-----------GVNANLPGDIAVRWVKTVPDDFHARF 111 L D + L +N+ LP +I + + +V + HARF Sbjct: 67 FDLTFDLTFDLTFDLTFDLTFDLTKNHINNHFKSKLNSFLPLNIKIINIFSVKKNIHARF 126 Query: 112 SATARRYRYII------YNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFR 165 +A +R Y Y I + + LSK ++ + + + A L DF+SF Sbjct: 127 NAISRVYEYRISLSKDPFLFQTSWQWLSKN------QIELKILKKGANILKKYKDFSSF- 179 Query: 166 AVQCQSRTPWRNVMHINVTR---HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPES 222 C+ ++ +N+ I+ + + I+AN F+ +MVR++VG+L+E+G Sbjct: 180 ---CKEKSK-KNLCEISTAKWILKKNILYFRIEANRFLRNMVRSLVGTLIELGIKKITIK 235 Query: 223 WIAELLAAKDRTLAAATAKAEGLYLVAVDYP 253 +++ AK+R LA TA A+GL+L+ ++YP Sbjct: 236 DFIKIIEAKNRNLAGITAPAKGLFLIKINYP 266 >UniRef50_B3EU82 Pseudouridylate synthase n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3EU82_AMOA5 Length = 253 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 84/246 (34%), Positives = 114/246 (46%), Gaps = 7/246 (2%) Query: 14 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFE 73 L I Y G+ Y+GWQ Q SVQ ++K L+Q+ + I + + RTD GVH Q H + Sbjct: 5 LEIAYQGTHYHGWQIQQNATSVQAVIQKKLTQLLSTNIEIVGSSRTDTGVHAQQQFAHVD 64 Query: 74 TTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 +N +P DIA+ + V H+RF A +R Y Y I + + Sbjct: 65 MPFTIDIDKLKYKLNLIVPSDIAILGIHPVLPTAHSRFDALSRTYVYKI--SCTKNPFMQ 122 Query: 134 KGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAV-QCQSRTPWRNVMHIN----VTRHGP 188 F LD E+M+ AA L +F SF V T + N+ +I T Sbjct: 123 ATTYVFRRVLDLEKMNEAAAILKIYKNFESFSKVGSITDHTLYPNLCNIIEAHWSTGSND 182 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 ++ I AN F+ MVR IVG+L+EVG L KDR LAA+ A GL LV Sbjct: 183 QLIFQITANRFLRGMVRAIVGNLLEVGLGKCSVKDFEYTLVQKDRNLAASLVPACGLTLV 242 Query: 249 AVDYPD 254 V YPD Sbjct: 243 NVTYPD 248 >UniRef50_Q6AD25 tRNA pseudouridine synthase A n=9 Tax=Bacteria RepID=TRUA_LEIXX Length = 288 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 93/282 (32%), Positives = 133/282 (47%), Gaps = 41/282 (14%) Query: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQV---ANEPITVFCAG 57 M+DQ + L I Y G+ + GW RQ ++R+VQ LE+AL+ + + EP ++ AG Sbjct: 1 MTDQ----ATRFRLDIAYQGTDFAGWARQPDLRTVQGTLEEALATIFRCSGEPPSLTVAG 56 Query: 58 RTDAGVHGTGQVVHFETT---------------------ALRKDAAWTLGVNANLPGDIA 96 RTDAGVH TGQV H + + AL++ LG +P D+ Sbjct: 57 RTDAGVHATGQVAHVDLSPEQVALLRRPHGKREPQLAHDALKRRVNGVLG---PVP-DVL 112 Query: 97 VRWVKTVPDDFHARFSATARRYRYIIYNH-RLRPAVLSKGVTHFYEPLDAERMHRAAQCL 155 V P F ARFSA RRY Y + + LR + LD + M R A + Sbjct: 113 VSRATEAPAGFDARFSALWRRYEYRVADRIALRDPLQRHRTAWVPNTLDVDAMDRGAHGM 172 Query: 156 LGENDFTSFRAVQCQSR---TPWRNVMHINVTRHGPYVVV-DIKANAFVHHMVRNIVGSL 211 LG +DF S+ C++R T R + + R V++ ++ A+AF H MVR +VG+ Sbjct: 173 LGLHDFASY----CKAREGATTIRTLQAFSWRRDAEGVLLGEVAADAFCHSMVRALVGAC 228 Query: 212 MEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYP 253 +EVG + L + RT A A GL L V YP Sbjct: 229 VEVGEGKLRPGDLVTLRDERQRTSAFKVMPARGLTLREVGYP 270 >UniRef50_A9FHM9 Pseudouridylate synthase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FHM9_SORC5 Length = 281 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/239 (34%), Positives = 120/239 (50%), Gaps = 5/239 (2%) Query: 14 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFE 73 L + YDG + G+ RQ + R+V +L AL + + A RTDAGVH Q V F+ Sbjct: 2 LSVAYDGRPFAGFARQRDQRTVSGELLGALRVIDPGIREIRGASRTDAGVHARDQRVAFD 61 Query: 74 TTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 TTA W L +LP +I +R V F RF + +RYRY+I +R LS Sbjct: 62 TTAPLPPRGWVLATARHLPDEIVIRRAAVVRLGFSPRFESLRKRYRYLILRDLVRDPFLS 121 Query: 134 KGVTHFYEPLDA--ERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNV--MHINVTRHGPY 189 + D ER A G +DF +FR + T R + + +++ P Sbjct: 122 RRAWRVEGITDEAIERARAEALAAKGTHDFAAFRTSADERTTTVRTLYGVELSLDPADPR 181 Query: 190 VV-VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 VV +D++ NAF+H+MVR +VG+LM+V + IA L++ DR A TA +GLYL Sbjct: 182 VVRIDVEGNAFLHNMVRILVGTLMDVARGHLAPGAIARALSSLDRRDAGITAPPDGLYL 240 >UniRef50_Q54RR6 Pseudouridylate synthase n=1 Tax=Dictyostelium discoideum RepID=Q54RR6_DICDI Length = 343 Score = 117 bits (293), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 90/304 (29%), Positives = 137/304 (45%), Gaps = 59/304 (19%) Query: 8 PVYKIALGIEYDGSKYYGWQRQNE---VRSVQEKLEKALSQVANEPITVFCAGRTDAGVH 64 P YKI EY G + G+QR VQ+ LE +L ++ I + + RTD GV Sbjct: 3 PRYKIIY--EYIGKSFTGFQRLKYPVVKLPVQQVLEDSLEKIHGYKIPIVGSSRTDHGVS 60 Query: 65 GTGQVVHFETTA----------LRKDAAWTLGVNANLPGDI--AVRWVKT--VPDDFHAR 110 GQV HF+ L T+ +N N+ + ++R +KT V D FH R Sbjct: 61 AVGQVSHFDVKTRTSKSGIEMPLLSPEELTMAINYNVGKEYLKSIRIIKTEIVDDKFHCR 120 Query: 111 FSATARRYRYIIYNHRLRPAVLSKGVTHFY---EPLDAERMHRAAQCLLGENDFTSFRAV 167 F+AT+R Y Y + + R + + + Y L+ + M +A++ +G +DF+SFR+ Sbjct: 121 FNATSRTYLYRVMANCGRKQIPLELLDRVYLVGPILNLDEMRKASEMFIGTHDFSSFRSA 180 Query: 168 QCQSRTPWRNVMHI------------------NVTRHGP-------------------YV 190 +C S P R++ HI N++R Y Sbjct: 181 KCSSTRPIRSISHIKIYDLPLPDIFQYNPSFQNISRSNTNYPIGDGEKNLDKKNTGLQYF 240 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 ++IKA AF+H+ VR +V SL++VG + E+ KDR A TA E L L+ V Sbjct: 241 GIEIKARAFLHNQVRIMVASLIKVGEGEISIQQLEEIKDKKDRGAAPPTASPEPLTLLTV 300 Query: 251 DYPD 254 Y D Sbjct: 301 SYDD 304 >UniRef50_D2MMG6 tRNA pseudouridine synthase A n=1 Tax=Bulleidia extructa W1219 RepID=D2MMG6_9FIRM Length = 320 Score = 117 bits (293), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 112/239 (46%), Gaps = 4/239 (1%) Query: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 + Y G+ Y GWQ Q + S+QEK+E LSQ+ E TV +GRTDA V+ GQ F++ Sbjct: 8 VAYVGANYCGWQSQKKGNSIQEKIEAVLSQINQEKTTVIASGRTDAKVNALGQCFQFQSE 67 Query: 76 ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKG 135 W ++ LP DI V+ V+ V + FHARF + Y Y I H V K Sbjct: 68 KNIDSYRWLGIFHSFLPKDIYVKQVEEVDETFHARFLVEQKTYLYRI--HLGDYDVFQKD 125 Query: 136 VT-HFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSR-TPWRNVMHINVTRHGPYVVVD 193 + E L+ + M + + G + F SF R + + + ++ ++ Sbjct: 126 DSFQLREDLNLKEMRKCWKLFEGTHSFLSFNTSSLSEYPNQVRTIFRTELRKISDHLELE 185 Query: 194 IKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 I N ++ HMVR +VG+ +EVG + +L R A A A+GL L V Y Sbjct: 186 ISGNGYLRHMVRILVGTCLEVGRGKLTIEEVQRMLNDPSRHYATKKAPAQGLCLKEVSY 244 >UniRef50_A4S4E5 Pseudouridylate synthase n=2 Tax=Ostreococcus RepID=A4S4E5_OSTLU Length = 308 Score = 117 bits (292), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 97/286 (33%), Positives = 135/286 (47%), Gaps = 38/286 (13%) Query: 16 IEYDGSKYYGWQRQNEVR-SVQEKLEKALSQVANEPITVFCAG--RTDAGVHGTGQVVHF 72 +EYDG+++ G+QRQ V +VQ L++AL+ + C G RTD GVH HF Sbjct: 18 LEYDGARFRGFQRQCGVAATVQGALDEALTAFTGARGAIECVGSSRTDVGVHALRNSAHF 77 Query: 73 ETTALRKD---------AAWTLGVNANLPG-DIAVRWVKTVPDD-----FHARFSATARR 117 + KD A+ GVN +L AVR + V D FHAR A ARR Sbjct: 78 DFARTTKDGTTVEPHDGASVRRGVNYHLRKLGAAVRVTECVRVDEMNPKFHARHDAVARR 137 Query: 118 YRY-IIYNHRLRPAVLSKGVTHFY------EPLDAERMHRAAQCLLGENDFTSFRAVQCQ 170 YRY I+ R L +Y L+ + M AA L G +DF+SFRA CQ Sbjct: 138 YRYDILVGERDDGGSLFDAERAWYVRATCDGRLNVDAMRDAAAALTGTHDFSSFRANGCQ 197 Query: 171 SRTPWRNVMHINVTRH------------GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHN 218 + +P R + I+V + + + A +F++H VR + G+L VGA++ Sbjct: 198 ASSPVRTLTSIDVKEELTEWPAAEARGTKQKISIAVAAPSFLYHQVRLLAGALKAVGAND 257 Query: 219 QPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDLPKPPMG 264 + ELL AKD A A A GLYL V Y + Y + +P G Sbjct: 258 LTVKDVQELLEAKDVARAPQMAPAHGLYLADVAYLENYAV-RPAYG 302 >UniRef50_O66953 tRNA pseudouridine synthase A n=2 Tax=Aquificaceae RepID=TRUA_AQUAE Length = 241 Score = 116 bits (291), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 122/237 (51%), Gaps = 3/237 (1%) Query: 14 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFE 73 L + + G+ +YGWQ Q +R+VQ +++KALSQ+ E + V RTD+GVH + +F+ Sbjct: 6 LRLAFVGTNFYGWQVQPNLRTVQGEIQKALSQILCEDVKVTGCCRTDSGVHALDYIANFK 65 Query: 74 TTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 T + +N LP D+ V VK V ++F+AR+S + Y Y I+N +R L Sbjct: 66 TQKDFPEEKLLKALNGILPKDVGVYAVKKVSEEFNARYSVKGKVYLYKIWNSEVRNPFLY 125 Query: 134 KGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVD 193 ++ E + + G +DF + ++ + R N+ +++ P + + Sbjct: 126 PFSWQVKREINTEVLRNILKKFEGTHDFRALTKLE-EERNTVINLEEVSLNVEYPLIEIR 184 Query: 194 IKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 +KA+ F+ +MVR IVG+ +++ E + ELL K + TA +GL+L V Sbjct: 185 LKASHFLRYMVRRIVGTAVKISLGLYSEEVLEELLQGKGN--SPYTAPPQGLHLEKV 239 >UniRef50_Q6UA45 Pseudouridylate synthase (Fragment) n=1 Tax=Buchnera aphidicola (Tetraneura caerulescens) RepID=Q6UA45_BUCTC Length = 107 Score = 116 bits (290), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 49/100 (49%), Positives = 73/100 (73%) Query: 161 FTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQP 220 F+ FRA CQS+T +R ++ +++ R +V+++I+ANAF++ MVRNIVGSL+EVG + Sbjct: 1 FSGFRAKNCQSKTAFRKIIRLDIFRKNFFVIIEIEANAFLYKMVRNIVGSLIEVGLKRKN 60 Query: 221 ESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDLPK 260 SWI +L +K+R L+ TA A GLYLV VDYP +++PK Sbjct: 61 VSWIDTILKSKNRKLSGPTASANGLYLVYVDYPSNFNIPK 100 >UniRef50_B0G612 Pseudouridylate synthase n=7 Tax=Bacteria RepID=B0G612_9FIRM Length = 310 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 125/245 (51%), Gaps = 7/245 (2%) Query: 12 IALGIEYDGSKYYGWQRQNEVRS---VQEKLEKALSQVANEP-ITVFCAGRTDAGVHGTG 67 I + IEYDGS+Y GW R + S + K+ L ++ E I + C RT+ GVH Sbjct: 69 IKITIEYDGSRYQGWTRLGKDESNNTISAKIIDVLGKMTGEKNIELNCGCRTEVGVHAYA 128 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QV +F+T++ +N LP DIA+ V+ VPD FHA+ +A ++ Y Y + + Sbjct: 129 QVANFKTSSNLSTKDIQHYLNRYLPMDIAITEVEEVPDRFHAQLNAVSKTYVYRMTIMDV 188 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 K H ++ D + M +AA +GE+DF +F + +S+ R V I++ Sbjct: 189 PSVFERKHTYHCFKTPDKKAMQQAALLFIGEHDFRNFSTAK-KSKNTTREVYDIDIYGDN 247 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + + I+A+ F+H+M R ++G+L+++G + + I + + +GLYL Sbjct: 248 EEMQILIQADDFLHNMARLMIGTLLDIGFGLRKKEDIEAIFNGE--KAVGNPCDPKGLYL 305 Query: 248 VAVDY 252 V+Y Sbjct: 306 QEVEY 310 >UniRef50_D2NRR5 Pseudouridylate synthase n=2 Tax=Rothia mucilaginosa RepID=D2NRR5_9MICC Length = 348 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 94/286 (32%), Positives = 131/286 (45%), Gaps = 47/286 (16%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 +++ + YDGS + GW Q + +VQ +E AL + P V AGRTDAGVH Q Sbjct: 45 THRVRIDCAYDGSLFSGWAAQPNLVTVQGVIENALELILRAPHRVVVAGRTDAGVHAEAQ 104 Query: 69 VVHFE--------------------------TTALRK---DAAWTLGVNAN----LPGDI 95 +H + T AL++ DA L + N L G I Sbjct: 105 TLHCDLSDEDWTRLQGRTGEDDPTAALGRRLTGALQRCLYDAEEQLNLPKNVRGILQGAI 164 Query: 96 AVRWVKTVPDDFHARFSATARRYRYIIYN---HRLRPAVLSKGVT-HFYEPLDAERMHRA 151 + V VP DF ARFSAT RRY Y I + L P L + T E LD ++ + Sbjct: 165 QIHRVAEVPFDFDARFSATGRRYVYRIADGAADGLNP--LHRTYTWAVPEHLDCADLNES 222 Query: 152 AQCLLGENDFTSFRAVQCQSR---TPWRNVMHINVTR-HGPYVVVDIKANAFVHHMVRNI 207 AQ LLG DF SF C+ R T R + ++ TR + V + A+AF HHMVR++ Sbjct: 223 AQQLLGLRDFLSF----CKPREGATTIRELRELSFTRTESALIEVCVVADAFCHHMVRSL 278 Query: 208 VGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYP 253 VG+L+ G + +W+ E + R + A L L + YP Sbjct: 279 VGALVLYGTGKRDAAWLRERIENPGREASLTLAPPHALALAEIYYP 324 >UniRef50_B7AQ15 Pseudouridylate synthase n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AQ15_9BACE Length = 256 Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 125/255 (49%), Gaps = 22/255 (8%) Query: 14 LGIEYDGSKYYGWQRQNEV-RSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHF 72 L I+YDGS+Y GWQR N+ ++++ L A+ + E + +GRTDAGVH Q +F Sbjct: 6 LTIQYDGSRYNGWQRLNDTDNTIEQILTDAIIKSTGEKTKLIGSGRTDAGVHALAQTANF 65 Query: 73 ETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYII------YNHR 126 + +T +N+ LP DI V K VP DFH+R SAT + Y Y I R Sbjct: 66 RCRQRLDEMHFTEELNSMLPEDIRVNLTKRVPPDFHSRHSATGKYYVYRIEISEPANPFR 125 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV--- 183 R + G+ D + M AAQ ++GE+DF +F + V IN+ Sbjct: 126 RRYSWKPDGIP------DVKLMCEAAQRMIGEHDFKAFCTDAKLMPYTVKTVYDINIHKD 179 Query: 184 -----TRHGPYVV-VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAA 237 R P ++ ++ + F+++MVR + G++++ G + I +L R+++ Sbjct: 180 YSCLWNREEPGIIELEFHGSGFLYNMVRIMAGTIVDAGLGRFSPADIDAMLNGGTRSMSG 239 Query: 238 ATAKAEGLYLVAVDY 252 A A GL+L +Y Sbjct: 240 QLAPARGLFLKKAEY 254 >UniRef50_B5CR77 Pseudouridylate synthase n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR77_9FIRM Length = 242 Score = 113 bits (283), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 119/240 (49%), Gaps = 4/240 (1%) Query: 14 LGIEYDGSKYYGWQR-QNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHF 72 + ++YDG++Y GW + + V++V KLE+ L+++ +P+T+ A RT+ VH + QV F Sbjct: 6 MTLQYDGTRYLGWTKNEKSVKTVSYKLEQVLTRLLGQPVTLHAAVRTEPCVHASCQVCSF 65 Query: 73 ETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVL 132 E +N LP DI V + V F A A Y Y + + Sbjct: 66 EADLPFSPEVLKKQMNQYLPMDIKVLSLLPVSGRFRADLGIRAYTYEYNVCTASVYDVFH 125 Query: 133 SKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 S+ HF+ D M +AA CL+G++DF SF V+ + + + +++++ ++ + Sbjct: 126 SRYQAHFFPAPDLALMKQAASCLIGKHDFQSFSPVR-KKKGTKKELLYLDFIQNKEQLSF 184 Query: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 + ANAF+ M + IVG+L+E+G + I + + ++GL+L + Y Sbjct: 185 RLTANAFLPSMPQLIVGTLLEIGQGKRSPDCILSIFEGNET--PGNFCPSDGLFLTEIQY 242 >UniRef50_B2UNB6 tRNA pseudouridine synthase A n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=TRUA_AKKM8 Length = 265 Score = 113 bits (283), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 81/259 (31%), Positives = 120/259 (46%), Gaps = 21/259 (8%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +I YDG Y GWQ Q R+VQ+ LE+A S + + +GRTDAGVH GQV Sbjct: 3 RIRFTAAYDGRPYLGWQSQPGGRTVQDVLERAFSGLFGTTCRIHGSGRTDAGVHALGQVF 62 Query: 71 HFETTALRKDAA--WTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 H + + A W +N LP I + + VP FHARFSAT + YRY I R Sbjct: 63 HADAPDTHRIPADKWPAALNTRLPRTIRITHAEYVPPGFHARFSATGKTYRYCIS----R 118 Query: 129 PAVLS--KGVTHFYEPL--DAERMHRAAQCLLGENDFTSFRAVQCQSRTPW------RNV 178 +L+ ++ PL + + +A G +DFT+F A++ P R + Sbjct: 119 APILNPFDAGLAWHRPLAWSVDILEQAVHLFRGTHDFTAFAALRGNEPRPIPEGYFRRTI 178 Query: 179 MHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAA---KDRTL 235 V + G +V + F++ MVR + G+ E +A L+ A D++ Sbjct: 179 TQTQVAQTGEHVFITFTGTGFLYKMVRLMTGAAHEAARGKITLEELARLINAPLPDDKS- 237 Query: 236 AAATAKAEGLYLVAVDYPD 254 A +GL L+ V YP+ Sbjct: 238 -PFCAPPDGLTLMRVHYPE 255 >UniRef50_Q6NKP7 Pseudouridylate synthase n=14 Tax=Embryophyta RepID=Q6NKP7_ARATH Length = 372 Score = 113 bits (283), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 95/326 (29%), Positives = 142/326 (43%), Gaps = 78/326 (23%) Query: 7 PPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGT 66 P V + + IEY G+++ G Q+Q + R+V L++A + +P+ +FC+ RTDAGVH Sbjct: 52 PRVQRYLVAIEYIGTRFSGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHAL 111 Query: 67 GQVVHFETTALRKDAAWTL-----------GVNANLP---GDIAVRWVKTVPDDFHARFS 112 V H + + K + VN L GD+ V V+ VP ++HAR+ Sbjct: 112 SNVCHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYK 171 Query: 113 ATARRYRYIIYNHRLRPAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQS 171 A R Y Y + + ++L K H E L+ M A + L+G +DF+SFRA CQ+ Sbjct: 172 AQERTYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFRAAGCQA 231 Query: 172 R----------------TPW------RNVMHIN-----------------VT-------- 184 + TP+ R + ++N VT Sbjct: 232 KSPMRSLDELNITEVPSTPYFPSITERTLSNLNNGDPLACSNQPKSETAGVTTNVGEVEG 291 Query: 185 -----------RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDR 233 RH YVV ++ F++H VR IVG+L VG S + +L AK Sbjct: 292 STGGDSFGRRRRHRCYVVT-ARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEAKTV 350 Query: 234 TLAAATAKAEGLYLVAVDYPDRYDLP 259 + A A A GLYL V RY+ P Sbjct: 351 SAAKPMAPASGLYLARV----RYEFP 372 >UniRef50_B2S468 tRNA pseudouridine synthase A n=3 Tax=Treponema RepID=TRUA_TREPS Length = 280 Score = 113 bits (283), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 85/263 (32%), Positives = 121/263 (46%), Gaps = 20/263 (7%) Query: 9 VYKIALGIEYDGSKYYGWQRQ-----NEVRSVQEKLEKALSQVANEPITVFCAGRTDAGV 63 V KI L I YDG+++ GWQ+Q SVQ +LEK ++ ++ I V +GRTD+GV Sbjct: 4 VRKILLRISYDGTRFCGWQKQVSGSRERAPSVQGELEKVAEKIHHQKIAVIGSGRTDSGV 63 Query: 64 HGTGQVVHFETTALRKDAAWTL--GVNANLPGDIAVRWVKTVPDDFHARFSATARRYRY- 120 H GQ HF T +R A+ N+ LP I + + V HARFSA R YRY Sbjct: 64 HAVGQAAHF-CTPMRNILAYRFIPAFNSLLPHSIRITDAREVSSQLHARFSAVMRTYRYH 122 Query: 121 -----IIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPW 175 + Y H L P H D +++ A L GE D TSF A +S + Sbjct: 123 LHCAPVAYAHEL-PYCW-----HIARMPDIHLLNQYAATLKGELDCTSFAAAGDKSASKS 176 Query: 176 RNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTL 235 R + + + + +I ANAF+ MVR++ G+L+ +L AKDR L Sbjct: 177 RYFYDTHFSFNHRVLTFEISANAFLWKMVRSLTGTLLHCEKKRCSVREFVRILHAKDRRL 236 Query: 236 AAATAKAEGLYLVAVDYPDRYDL 258 + G P+ Y + Sbjct: 237 QGPPHRRMGYSYGTSVTPNTYSV 259 >UniRef50_A8IW91 Pseudouridylate synthase (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8IW91_CHLRE Length = 239 Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 81/233 (34%), Positives = 112/233 (48%), Gaps = 18/233 (7%) Query: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEP---ITVFCAGRTDAGVHGTGQVVHF 72 + YDG+ Y GWQ Q +VQ KLE AL V E + V AGRTD+GVH GQV Sbjct: 9 LAYDGTDYCGWQLQPAAPTVQAKLEAALGTVLREDRGVLGVRAAGRTDSGVHARGQVRTG 68 Query: 73 ETT--ALRKDA-AWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 T L D A+ L NA LP DI V V+ DF S + Y Y I N Sbjct: 69 LTGRGGLPVDKLAYKL--NAVLPPDIRVMGVRRTAPDFSVTCSPIGKTYHYNITNSEAHD 126 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAV-----QCQSRTPWRNVMHINVT 184 + + H +PLD M AA L+G +DFT F + + + R P + + ++V Sbjct: 127 PLRHRYAYHVRKPLDLAGMRAAAALLVGTHDFTQFSNIGEEGGRPRKRNPVKTLRRMDVV 186 Query: 185 RHGPY-----VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKD 232 P V ++++ N F++ MVR+I G L+ VG P ++E+L D Sbjct: 187 ELDPAAFPGGVRIEVEGNGFLYKMVRHISGVLVAVGERKLPPGIVSEMLEVGD 239 >UniRef50_A6TQL8 Pseudouridylate synthase n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TQL8_ALKMQ Length = 248 Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 71/242 (29%), Positives = 124/242 (51%), Gaps = 6/242 (2%) Query: 16 IEYDGSKYYGWQRQ--NEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFE 73 I YDG KY G+ + N +S+Q KLE LS++ E + V A TDAGVH GQ+V+F Sbjct: 8 IAYDGRKYTGYNKSKDNLEKSIQGKLELILSKLYEEEVEVISAVSTDAGVHSKGQIVNFI 67 Query: 74 TTALRKDAAWTLG-VNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL--RPA 130 R D L DI + V+T + FH+R+ + Y Y ++ RP Sbjct: 68 APNSRLDEKEIFDYFEKYLTDDIIILSVETADERFHSRYLMKSATYEYRLWKKDAPNRPL 127 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + V + +D ++ +A + L+GE+DF +F + +++ + ++ ++V + Sbjct: 128 FERQYVNLMNQTVDVTKIKKAGKYLVGEHDFLAFTTNRKTTKS-IKTMVSLDVMETRNEI 186 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 ++ + AN F+ +M R IVG+L+++G P + I + +K+ A A L L++V Sbjct: 187 IITMTANGFLLNMERVIVGTLIQIGLGQLPMNTIEKAFESKNMNDVGHKASAGALCLLSV 246 Query: 251 DY 252 +Y Sbjct: 247 EY 248 >UniRef50_B1AJH7 tRNA pseudouridine synthase A n=15 Tax=Ureaplasma RepID=TRUA_UREP2 Length = 241 Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 75/250 (30%), Positives = 126/250 (50%), Gaps = 18/250 (7%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN-EPITVFCAGRTDAGVHGTGQ 68 YKI+L YDGS +YGW RQ + R+VQ LE+ + I + +GRTD GVH Q Sbjct: 3 YKISL--RYDGSLFYGWARQPQKRTVQGDLEEIFKSIFKINNIRIIGSGRTDKGVHAYEQ 60 Query: 69 VVHFETTALRKDAAWTL-GVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 + +AL+ D+ + + DI + V+ V D FHA+++AT++ Y+Y+I ++ Sbjct: 61 TFSVKHSALKYDSHIIYQALCSRTSSDIQILEVQKVDDSFHAQYNATSKTYQYVINDYEF 120 Query: 128 RPAVLSKGVTHFY--EPLDAERMHRAAQCLLGENDFTSFRAVQCQ---SRTPWRNVMHIN 182 L + + + ++ +++ A + +GE+DF SF + R W + Sbjct: 121 D---LFRNNYELFVNQKINDQKILEALELFVGEHDFKSFSTSELTMTIRRINWVKI---- 173 Query: 183 VTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 + ++++ I AN F+ +MVR IV S ++ + + I ELL + + A A Sbjct: 174 --KRDTHLIIYINANGFLKNMVRMIVASCLDYAFNKISLAKIHELLIYPKKGASIKLAPA 231 Query: 243 EGLYLVAVDY 252 GLYL V Y Sbjct: 232 CGLYLYKVYY 241 >UniRef50_B1ZVD8 Pseudouridylate synthase n=2 Tax=Opitutaceae RepID=B1ZVD8_OPITP Length = 268 Score = 110 bits (275), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 81/236 (34%), Positives = 122/236 (51%), Gaps = 2/236 (0%) Query: 18 YDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETTAL 77 YDG + GWQ Q SVQ+ +E L ++ + + +GRTDAGVH GQV HF+ Sbjct: 17 YDGGHFAGWQSQVSGASVQDAIEARLREMFGREVRIHGSGRTDAGVHALGQVFHFDAHWR 76 Query: 78 RKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVT 137 + A LP I ++ V V +FHARF A+ +RY Y ++ P Sbjct: 77 HGPEKLLAALRARLPSAIQIKTVCAVTPEFHARFQASGKRYTYRLHLGDADPFTRPYSWP 136 Query: 138 HFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRT-PWRNVMHINVTRHGPYVVVDIKA 196 F PLD M+ AA L G +DF +F A+ +R R++ ++V R G + + +A Sbjct: 137 VF-RPLDLAAMNAAAAVLRGRHDFRAFTALNGPARVDTVRDLRRLDVRRRGRVIRIIAEA 195 Query: 197 NAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 + F++ MVR++VG L+ VG + +LA++ RT TA +GL+LV V Y Sbjct: 196 DGFLYKMVRSLVGVLVAVGEGKLTVHDVRAILASRQRTAVVQTAPPQGLFLVRVFY 251 >UniRef50_C7PRM5 Pseudouridylate synthase n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PRM5_CHIPD Length = 250 Score = 110 bits (274), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 72/239 (30%), Positives = 116/239 (48%), Gaps = 3/239 (1%) Query: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 + Y G+ + G+Q Q+ V +VQ ++ A+S + I + RTDAGVH +HF+ Sbjct: 7 VAYKGTSFGGFQIQDNVETVQSVIDHAISTLMRGAIVTTGSSRTDAGVHARQNFLHFDME 66 Query: 76 ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKG 135 + VNA LP D+ +R + V DD H+RF+A +R Y Y +Y + P + +G Sbjct: 67 Q-PLHPQFLYKVNAILPPDVVMRNIYRVADDAHSRFAALSRSYEYTLYMEK-DPFMRDRG 124 Query: 136 VTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIK 195 F L E +H AA L +F +F Q +T N+M +V + Sbjct: 125 Y-FFPYTLHPELLHEAASVLREYENFMTFSKRNTQVKTYNCNIMSSEWEVGEDRIVYRVT 183 Query: 196 ANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPD 254 AN F+ MVR +VG+++ VG E + +++ A +GL+L+ V YP+ Sbjct: 184 ANRFLRGMVRGMVGTMLRVGRGKLTMDGFREAIESRNCVNADFAVPPQGLFLMKVAYPE 242 >UniRef50_B6WBX6 Pseudouridylate synthase n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6WBX6_9FIRM Length = 242 Score = 109 bits (273), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 67/217 (30%), Positives = 111/217 (51%), Gaps = 17/217 (7%) Query: 8 PVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + I L I+YDGS + G+Q Q + R+VQ++LE+A+ +V E + +GRTD+GVH Sbjct: 2 SIQNILLKIQYDGSLFEGFQIQKDKRTVQKELEEAIRKVTGEKNRIIASGRTDSGVHANE 61 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 V+F T + + + LP DI K V +FHARFS + Y+Y+I ++ Sbjct: 62 MYVNFLTAKDIRADKFHFHLKKYLPADILALSSKKVDKNFHARFSVKTKTYKYVISLEKI 121 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH- 186 + + LD +++ + + L GE+DF +F + +N + IN R Sbjct: 122 LHPIYRNYMEQITYKLDFDKLKQGMEILKGEHDFRAFMLSE-------KNDI-INTIRKI 173 Query: 187 -GPYVVVD-------IKANAFVHHMVRNIVGSLMEVG 215 Y ++D KA +F+H+ VR + GSL+E+ Sbjct: 174 DDCYYILDNNILFLYFKAESFLHNQVRIMAGSLIELS 210 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q15VG2 tRNA pseudouridine synthase A n=12 Tax=Gammaprot... 371 e-101 UniRef50_B3PFN7 Pseudouridylate synthase n=2 Tax=Gammaproteobact... 339 6e-92 UniRef50_A5WGT0 Pseudouridylate synthase n=6 Tax=Moraxellaceae R... 339 8e-92 UniRef50_A1U0X5 Pseudouridylate synthase n=7 Tax=Bacteria RepID=... 337 3e-91 UniRef50_B8D8Z8 tRNA pseudouridine synthase A n=6 Tax=Enterobact... 336 5e-91 UniRef50_B0KCN3 tRNA pseudouridine synthase A n=9 Tax=Clostridia... 334 2e-90 UniRef50_Q21IY8 Pseudouridylate synthase n=2 Tax=Gammaproteobact... 333 4e-90 UniRef50_Q31HH6 tRNA pseudouridine synthase A n=4 Tax=Gammaprote... 330 3e-89 UniRef50_Q6FEV2 tRNA pseudouridine synthase A n=383 Tax=Proteoba... 330 4e-89 UniRef50_A4XKB7 tRNA pseudouridine synthase A n=11 Tax=Clostridi... 329 9e-89 UniRef50_B8I814 tRNA pseudouridine synthase A n=19 Tax=Clostridi... 328 2e-88 UniRef50_A6TWE8 Pseudouridylate synthase n=8 Tax=Clostridiales R... 327 3e-88 UniRef50_A7NCA0 tRNA pseudouridine synthase A n=19 Tax=Francisel... 326 4e-88 UniRef50_B5CQB6 Pseudouridylate synthase n=9 Tax=Bacteria RepID=... 326 4e-88 UniRef50_C4Z2W2 Pseudouridylate synthase n=10 Tax=Firmicutes Rep... 325 9e-88 UniRef50_Q8XLQ0 tRNA pseudouridine synthase A 1 n=12 Tax=Clostri... 324 3e-87 UniRef50_B9M6W5 tRNA pseudouridine synthase A n=8 Tax=Deltaprote... 323 3e-87 UniRef50_Q2LUS6 Pseudouridylate synthase n=5 Tax=Bacteria RepID=... 323 4e-87 UniRef50_B5EFM8 tRNA pseudouridine synthase A n=4 Tax=Bacteria R... 323 5e-87 UniRef50_C6D4K9 Pseudouridylate synthase n=1 Tax=Paenibacillus s... 320 2e-86 UniRef50_UPI0001C37706 tRNA pseudouridine synthase A n=1 Tax=Rum... 320 3e-86 UniRef50_Q8K9U4 tRNA pseudouridine synthase A n=2 Tax=Buchnera a... 320 4e-86 UniRef50_Q1QY44 Pseudouridylate synthase n=1 Tax=Chromohalobacte... 319 6e-86 UniRef50_Q0AGX7 tRNA pseudouridine synthase A n=26 Tax=Proteobac... 319 6e-86 UniRef50_Q3A3B5 tRNA pseudouridine synthase A n=6 Tax=Desulfurom... 319 7e-86 UniRef50_A3ZQX0 Pseudouridylate synthase n=1 Tax=Blastopirellula... 318 2e-85 UniRef50_B9TJ99 Pseudouridylate synthase n=4 Tax=cellular organi... 318 2e-85 UniRef50_Q1K346 Pseudouridylate synthase n=1 Tax=Desulfuromonas ... 317 2e-85 UniRef50_D2RNY1 tRNA pseudouridine synthase A n=2 Tax=Acidaminoc... 317 2e-85 UniRef50_Q0AUL4 tRNA pseudouridine synthase A n=1 Tax=Syntrophom... 316 5e-85 UniRef50_A0L9F6 Pseudouridylate synthase n=1 Tax=Magnetococcus s... 315 1e-84 UniRef50_A0LIV1 Pseudouridylate synthase n=1 Tax=Syntrophobacter... 314 2e-84 UniRef50_C6J6C3 Pseudouridylate synthase n=2 Tax=Bacillales RepI... 314 3e-84 UniRef50_A4BHD0 Pseudouridylate synthase n=1 Tax=Reinekea blande... 312 1e-83 UniRef50_A1AXN3 Pseudouridylate synthase n=3 Tax=Bacteria RepID=... 311 1e-83 UniRef50_C8NBU9 Pseudouridylate synthase n=1 Tax=Cardiobacterium... 311 1e-83 UniRef50_C4Z854 Pseudouridylate synthase n=3 Tax=Clostridiales R... 311 2e-83 UniRef50_C0EKI9 Pseudouridylate synthase n=6 Tax=Neisseriaceae R... 311 2e-83 UniRef50_B0TC90 Pseudouridylate synthase n=3 Tax=Clostridiales R... 310 2e-83 UniRef50_A7C1F2 Pseudouridylate synthase n=1 Tax=Beggiatoa sp. P... 310 4e-83 UniRef50_B1XV49 tRNA pseudouridine synthase A n=97 Tax=Betaprote... 310 4e-83 UniRef50_Q63H59 tRNA pseudouridine synthase A 1 n=102 Tax=Bacill... 309 5e-83 UniRef50_A5N4T0 tRNA pseudouridine synthase A n=25 Tax=Clostridi... 309 7e-83 UniRef50_Q5WLN0 tRNA pseudouridine synthase A n=15 Tax=Bacillale... 309 9e-83 UniRef50_A7VWN0 Pseudouridylate synthase n=2 Tax=Clostridium Rep... 308 1e-82 UniRef50_D0LWH9 Pseudouridylate synthase n=2 Tax=Deltaproteobact... 308 1e-82 UniRef50_C0X1G0 Pseudouridylate synthase n=36 Tax=Enterococcus R... 307 3e-82 UniRef50_Q1Q1P7 Pseudouridylate synthase n=1 Tax=Candidatus Kuen... 307 3e-82 UniRef50_A7VFR5 Pseudouridylate synthase n=7 Tax=Clostridiales R... 306 6e-82 UniRef50_UPI0000E87E98 tRNA pseudouridine synthase A n=1 Tax=Met... 305 8e-82 UniRef50_C5T803 Pseudouridylate synthase n=2 Tax=Comamonadaceae ... 305 8e-82 UniRef50_A8ZTL2 Pseudouridylate synthase n=1 Tax=Desulfococcus o... 305 8e-82 UniRef50_UPI0001C35668 tRNA pseudouridine synthase A n=1 Tax=Clo... 305 1e-81 UniRef50_UPI00016C512A tRNA pseudouridine synthase A n=1 Tax=Gem... 305 1e-81 UniRef50_C6PXV6 Pseudouridylate synthase n=2 Tax=Clostridium Rep... 304 2e-81 UniRef50_D2R418 tRNA pseudouridine synthase A n=1 Tax=Pirellula ... 304 2e-81 UniRef50_A6NVS7 Pseudouridylate synthase n=1 Tax=Bacteroides cap... 304 3e-81 UniRef50_B0MNN1 Pseudouridylate synthase n=1 Tax=Eubacterium sir... 303 3e-81 UniRef50_A8W1A9 Pseudouridylate synthase n=2 Tax=Bacillus RepID=... 303 3e-81 UniRef50_C8WTU3 Pseudouridylate synthase n=2 Tax=Alicyclobacillu... 302 6e-81 UniRef50_B7K222 tRNA pseudouridine synthase A n=12 Tax=Cyanobact... 302 6e-81 UniRef50_Q7TU07 tRNA pseudouridine synthase A n=1 Tax=Rhodopirel... 301 2e-80 UniRef50_C4V5N7 Pseudouridylate synthase n=1 Tax=Selenomonas flu... 301 2e-80 UniRef50_B3E0A0 tRNA pseudouridine synthase A n=1 Tax=Methylacid... 301 2e-80 UniRef50_UPI0001973C8C tRNA pseudouridine synthase A n=1 Tax=Clo... 300 3e-80 UniRef50_UPI0001BCC844 tRNA pseudouridine synthase A n=1 Tax=Sel... 300 4e-80 UniRef50_C1SLX8 Pseudouridylate synthase n=1 Tax=Denitrovibrio a... 299 5e-80 UniRef50_Q8D2P5 tRNA pseudouridine synthase A n=1 Tax=Wiggleswor... 299 5e-80 UniRef50_Q6ANM1 tRNA pseudouridine synthase A 1 n=1 Tax=Desulfot... 299 5e-80 UniRef50_C9KPE0 Pseudouridylate synthase n=2 Tax=Veillonellaceae... 299 6e-80 UniRef50_B9XDA1 Pseudouridylate synthase n=1 Tax=bacterium Ellin... 299 7e-80 UniRef50_Q813Z9 tRNA pseudouridine synthase A 2 n=77 Tax=Firmicu... 298 1e-79 UniRef50_Q45557 tRNA pseudouridine synthase A n=5 Tax=Firmicutes... 298 1e-79 UniRef50_C9LN87 Pseudouridylate synthase n=1 Tax=Dialister invis... 298 2e-79 UniRef50_B1I1B5 tRNA pseudouridine synthase A n=5 Tax=Clostridia... 298 2e-79 UniRef50_D1VSK1 Pseudouridylate synthase n=1 Tax=Peptoniphilus l... 297 2e-79 UniRef50_C0GG81 Pseudouridylate synthase n=1 Tax=Dethiobacter al... 297 2e-79 UniRef50_B0GAG0 Pseudouridylate synthase n=1 Tax=Dorea formicige... 296 4e-79 UniRef50_C2KUD3 Pseudouridylate synthase n=1 Tax=Oribacterium si... 296 5e-79 UniRef50_A8R9F5 Pseudouridylate synthase n=2 Tax=unclassified Er... 296 6e-79 UniRef50_Q2RNZ9 tRNA pseudouridine synthase A n=113 Tax=Alphapro... 296 7e-79 UniRef50_B6BU98 Pseudouridylate synthase n=1 Tax=beta proteobact... 295 7e-79 UniRef50_B9JQX0 tRNA pseudouridine synthase A n=19 Tax=Alphaprot... 294 2e-78 UniRef50_C5RHY1 Pseudouridylate synthase n=1 Tax=Clostridium cel... 294 2e-78 UniRef50_Q0F2X2 Pseudouridylate synthase n=1 Tax=Mariprofundus f... 294 2e-78 UniRef50_Q250I7 Pseudouridylate synthase n=2 Tax=Desulfitobacter... 293 4e-78 UniRef50_A8SNL4 Pseudouridylate synthase n=1 Tax=Parvimonas micr... 293 4e-78 UniRef50_Q5FPX3 tRNA pseudouridine synthase A n=1 Tax=Gluconobac... 293 4e-78 UniRef50_A9BNH5 tRNA pseudouridine synthase A n=9 Tax=cellular o... 293 5e-78 UniRef50_B9DM46 tRNA pseudouridine synthase A n=6 Tax=Staphyloco... 292 7e-78 UniRef50_A7HKV8 tRNA pseudouridine synthase A n=11 Tax=Thermotog... 292 7e-78 UniRef50_B9KIN8 tRNA pseudouridine synthase A n=5 Tax=Anaplasmat... 292 8e-78 UniRef50_Q6MEE7 tRNA pseudouridine synthase A 1 n=2 Tax=Parachla... 290 2e-77 UniRef50_A5I338 Pseudouridylate synthase n=17 Tax=Firmicutes Rep... 290 2e-77 UniRef50_C5NXQ0 Pseudouridylate synthase n=1 Tax=Gemella haemoly... 290 3e-77 UniRef50_C2DZZ6 Pseudouridylate synthase n=9 Tax=Lactobacillus R... 289 8e-77 UniRef50_A9KLD6 Pseudouridylate synthase n=2 Tax=Clostridium Rep... 288 9e-77 UniRef50_Q031N1 tRNA pseudouridine synthase A n=66 Tax=Streptoco... 288 1e-76 UniRef50_Q7MBB9 tRNA pseudouridine synthase A n=1 Tax=Gloeobacte... 288 1e-76 UniRef50_C1XI54 Pseudouridylate synthase n=1 Tax=Meiothermus rub... 288 2e-76 UniRef50_Q89ZY4 tRNA pseudouridine synthase A n=12 Tax=Bacteroid... 288 2e-76 UniRef50_C4XPZ9 tRNA pseudouridine synthase A n=4 Tax=Desulfovib... 287 2e-76 UniRef50_Q6G7A2 tRNA pseudouridine synthase A n=59 Tax=Staphyloc... 287 3e-76 UniRef50_B3QUL0 Pseudouridylate synthase n=1 Tax=Chloroherpeton ... 287 3e-76 UniRef50_A8GUM4 tRNA pseudouridine synthase A n=19 Tax=Alphaprot... 287 3e-76 UniRef50_C1ZAN4 Pseudouridylate synthase n=1 Tax=Planctomyces li... 287 3e-76 UniRef50_A9WH95 tRNA pseudouridine synthase A n=5 Tax=Chloroflex... 287 4e-76 UniRef50_A9KR47 Pseudouridylate synthase n=1 Tax=Clostridium phy... 285 1e-75 UniRef50_B0S2E1 tRNA pseudouridine synthase A n=3 Tax=Bacteria R... 285 1e-75 UniRef50_A8SWG9 Pseudouridylate synthase n=1 Tax=Coprococcus eut... 285 2e-75 UniRef50_Q253C0 tRNA pseudouridine synthase A n=12 Tax=Chlamydia... 284 2e-75 UniRef50_C0GLA2 Pseudouridylate synthase n=1 Tax=Desulfonatronos... 284 2e-75 UniRef50_B0N4B2 Pseudouridylate synthase n=4 Tax=Bacteria RepID=... 284 3e-75 UniRef50_B2IEW0 tRNA pseudouridine synthase A n=2 Tax=Alphaprote... 284 3e-75 UniRef50_Q03PY8 tRNA pseudouridine synthase A n=21 Tax=Lactobaci... 283 3e-75 UniRef50_Q73KE3 tRNA pseudouridine synthase A n=1 Tax=Treponema ... 283 3e-75 UniRef50_Q3A9U9 Pseudouridylate synthase n=1 Tax=Carboxydothermu... 283 4e-75 UniRef50_C6LCX6 Pseudouridylate synthase n=2 Tax=Lachnospiraceae... 283 4e-75 UniRef50_A5FAV0 Pseudouridylate synthase n=14 Tax=Bacteroidetes ... 283 5e-75 UniRef50_D1BP31 Pseudouridylate synthase n=3 Tax=Veillonella Rep... 282 7e-75 UniRef50_C4GC36 Pseudouridylate synthase n=1 Tax=Shuttleworthia ... 282 7e-75 UniRef50_Q04BY4 tRNA pseudouridine synthase A n=79 Tax=Firmicute... 282 1e-74 UniRef50_B5ZN21 tRNA pseudouridine synthase A n=21 Tax=Alphaprot... 281 1e-74 UniRef50_B5CS63 Pseudouridylate synthase n=6 Tax=Clostridiales R... 280 3e-74 UniRef50_C0QZT8 tRNA pseudouridine synthase A n=2 Tax=Brachyspir... 280 3e-74 UniRef50_Q11XU3 Pseudouridylate synthase n=1 Tax=Cytophaga hutch... 280 4e-74 UniRef50_A8S765 Pseudouridylate synthase n=4 Tax=Ruminococcaceae... 279 5e-74 UniRef50_D1XYC0 Pseudouridylate synthase n=2 Tax=Prevotella RepI... 279 7e-74 UniRef50_B5YGE4 tRNA pseudouridine synthase A n=1 Tax=Thermodesu... 278 1e-73 UniRef50_Q6MQH6 tRNA pseudouridine synthase A n=1 Tax=Bdellovibr... 278 1e-73 UniRef50_Q88XU9 tRNA pseudouridine synthase A n=6 Tax=Lactobacil... 278 2e-73 UniRef50_D0RR37 Pseudouridylate synthase n=1 Tax=alpha proteobac... 278 2e-73 UniRef50_C5CGS8 tRNA pseudouridine synthase A n=1 Tax=Kosmotoga ... 277 2e-73 UniRef50_A6LDA7 tRNA pseudouridine synthase A n=46 Tax=Bacteria ... 277 3e-73 UniRef50_D1N376 Pseudouridylate synthase n=1 Tax=Victivallis vad... 277 3e-73 UniRef50_B7A9H2 Pseudouridylate synthase n=2 Tax=Thermaceae RepI... 276 4e-73 UniRef50_C8X4C1 Pseudouridylate synthase n=1 Tax=Desulfohalobium... 275 7e-73 UniRef50_B5YDX5 tRNA pseudouridine synthase A n=2 Tax=Dictyoglom... 275 1e-72 UniRef50_A1A6J3 Pseudouridylate synthase n=14 Tax=Magnoliophyta ... 275 1e-72 UniRef50_Q2JUJ7 Pseudouridylate synthase n=2 Tax=Synechococcus R... 274 2e-72 UniRef50_Q6MDE3 tRNA pseudouridine synthase A 2 n=2 Tax=Parachla... 274 3e-72 UniRef50_Q5HBA4 tRNA pseudouridine synthase A n=13 Tax=Rickettsi... 273 3e-72 UniRef50_Q72I65 tRNA pseudouridine synthase A n=2 Tax=Thermus th... 273 5e-72 UniRef50_B2A4Q5 tRNA pseudouridine synthase A n=1 Tax=Natranaero... 273 6e-72 UniRef50_C2MC62 Pseudouridylate synthase n=1 Tax=Porphyromonas u... 272 7e-72 UniRef50_D0WG96 Pseudouridylate synthase n=1 Tax=Slackia exigua ... 272 7e-72 UniRef50_B9Y957 Pseudouridylate synthase n=1 Tax=Holdemania fili... 272 8e-72 UniRef50_Q1GE00 tRNA pseudouridine synthase A n=2 Tax=Ruegeria R... 272 9e-72 UniRef50_B9KZV8 Pseudouridylate synthase n=1 Tax=Thermomicrobium... 272 1e-71 UniRef50_D1B5U1 Pseudouridylate synthase n=1 Tax=Thermanaerovibr... 272 1e-71 UniRef50_Q3Z951 Pseudouridylate synthase n=5 Tax=Dehalococcoides... 272 1e-71 UniRef50_UPI0001BC54DA tRNA pseudouridine synthase A n=2 Tax=Fus... 272 1e-71 UniRef50_A6GZH6 Pseudouridylate synthase n=2 Tax=Bacteroidetes R... 270 3e-71 UniRef50_A5KLX7 Pseudouridylate synthase n=3 Tax=Clostridiales R... 270 3e-71 UniRef50_Q7TU31 tRNA pseudouridine synthase A n=7 Tax=Prochloroc... 270 4e-71 UniRef50_C4F9Q5 Pseudouridylate synthase n=3 Tax=Coriobacteriace... 269 6e-71 UniRef50_B5JG47 Pseudouridylate synthase n=1 Tax=Verrucomicrobia... 269 6e-71 UniRef50_C1TLE9 Pseudouridylate synthase n=3 Tax=Synergistaceae ... 269 6e-71 UniRef50_B0SC03 tRNA pseudouridine synthase A n=2 Tax=Leptospira... 269 8e-71 UniRef50_UPI00016BFD9D tRNA pseudouridine synthase A n=1 Tax=Epu... 269 8e-71 UniRef50_C0QUR7 Pseudouridylate synthase n=4 Tax=Hydrogenotherma... 269 9e-71 UniRef50_Q28LN3 tRNA pseudouridine synthase A n=16 Tax=Rhodobact... 268 2e-70 UniRef50_Q2LWJ8 Pseudouridylate synthase n=1 Tax=Syntrophus acid... 267 3e-70 UniRef50_A4EA88 Pseudouridylate synthase n=1 Tax=Collinsella aer... 267 3e-70 UniRef50_C8P3N2 Pseudouridylate synthase n=1 Tax=Erysipelothrix ... 266 5e-70 UniRef50_A4CM73 Pseudouridylate synthase n=2 Tax=Flavobacteriale... 266 5e-70 UniRef50_C8W7W7 Pseudouridylate synthase n=4 Tax=Coriobacteriace... 266 7e-70 UniRef50_D1PV12 Pseudouridylate synthase n=1 Tax=Prevotella berg... 265 8e-70 UniRef50_A9B439 Pseudouridylate synthase n=1 Tax=Herpetosiphon a... 265 8e-70 UniRef50_C0VZ39 Pseudouridylate synthase n=1 Tax=Actinomyces col... 265 1e-69 UniRef50_Q2JFE6 tRNA pseudouridine synthase A n=44 Tax=Actinomyc... 265 2e-69 UniRef50_Q30XU3 tRNA pseudouridine synthase A n=5 Tax=Desulfovib... 264 2e-69 UniRef50_B7AQ15 Pseudouridylate synthase n=1 Tax=Bacteroides pec... 264 2e-69 UniRef50_Q72DL8 tRNA pseudouridine synthase A n=4 Tax=Desulfovib... 264 2e-69 UniRef50_O66953 tRNA pseudouridine synthase A n=2 Tax=Aquificace... 264 3e-69 UniRef50_C7RE26 Pseudouridylate synthase n=3 Tax=Anaerococcus Re... 264 3e-69 UniRef50_C5RIE6 Pseudouridylate synthase n=1 Tax=Clostridium cel... 264 3e-69 UniRef50_B0VGH4 Pseudouridylate synthase n=1 Tax=Candidatus Cloa... 263 5e-69 UniRef50_Q01WL4 tRNA pseudouridine synthase A n=3 Tax=Acidobacte... 262 1e-68 UniRef50_Q1AU61 Pseudouridylate synthase n=1 Tax=Rubrobacter xyl... 262 1e-68 UniRef50_A5CET3 tRNA pseudouridine synthase A n=2 Tax=Orientia t... 262 1e-68 UniRef50_B1W3X8 tRNA pseudouridine synthase A n=16 Tax=Actinomyc... 261 2e-68 UniRef50_C3JAB4 Pseudouridylate synthase (Fragment) n=2 Tax=Bact... 261 2e-68 UniRef50_B4D9U5 Pseudouridylate synthase n=2 Tax=Verrucomicrobia... 261 2e-68 UniRef50_D1AG36 Pseudouridylate synthase n=1 Tax=Sebaldella term... 261 2e-68 UniRef50_D2MMG6 tRNA pseudouridine synthase A n=1 Tax=Bulleidia ... 260 3e-68 UniRef50_B2UNB6 tRNA pseudouridine synthase A n=1 Tax=Akkermansi... 260 5e-68 UniRef50_Q9RS37 tRNA pseudouridine synthase A n=3 Tax=Deinococcu... 259 8e-68 UniRef50_C3WLS9 Pseudouridylate synthase n=2 Tax=Fusobacterium R... 259 8e-68 UniRef50_Q3AW68 tRNA pseudouridine synthase A n=39 Tax=cellular ... 259 9e-68 UniRef50_B6YQE4 tRNA pseudouridine synthase A n=1 Tax=Candidatus... 257 2e-67 UniRef50_B5HPZ6 Pseudouridylate synthase n=1 Tax=Streptomyces sv... 257 2e-67 UniRef50_A9HKQ8 Pseudouridylate synthase n=4 Tax=Alphaproteobact... 257 3e-67 UniRef50_A9RTE3 Pseudouridylate synthase n=1 Tax=Physcomitrella ... 257 3e-67 UniRef50_C7HSK8 Pseudouridylate synthase n=1 Tax=Anaerococcus va... 257 4e-67 UniRef50_Q0SPF2 tRNA pseudouridine synthase A n=21 Tax=Borrelia ... 256 5e-67 UniRef50_Q4FNF9 tRNA pseudouridine synthase A n=5 Tax=Bacteria R... 256 6e-67 UniRef50_A0LRQ0 Pseudouridylate synthase n=2 Tax=Actinomycetales... 255 8e-67 UniRef50_D2QH82 tRNA pseudouridine synthase A n=1 Tax=Spirosoma ... 255 1e-66 UniRef50_C6WLZ4 Pseudouridylate synthase n=4 Tax=Actinomycetales... 255 1e-66 UniRef50_A4SAH5 Pseudouridylate synthase n=4 Tax=Mamiellales Rep... 255 2e-66 UniRef50_Q8R601 tRNA pseudouridine synthase A n=14 Tax=Fusobacte... 255 2e-66 UniRef50_C7ND49 Pseudouridylate synthase n=3 Tax=Leptotrichia Re... 254 2e-66 UniRef50_A6DH96 Pseudouridylate synthase n=1 Tax=Lentisphaera ar... 254 2e-66 UniRef50_C1A3U6 Pseudouridylate synthase n=1 Tax=Gemmatimonas au... 253 5e-66 UniRef50_B0G612 Pseudouridylate synthase n=7 Tax=Bacteria RepID=... 253 5e-66 UniRef50_A6FXP9 Pseudouridylate synthase n=1 Tax=Plesiocystis pa... 253 6e-66 UniRef50_C2KS13 Pseudouridylate synthase n=2 Tax=Mobiluncus muli... 252 7e-66 UniRef50_C4DMY7 Pseudouridylate synthase n=1 Tax=Stackebrandtia ... 252 1e-65 UniRef50_A1BFF0 tRNA pseudouridine synthase A n=10 Tax=Chlorobia... 252 1e-65 UniRef50_B3EU82 Pseudouridylate synthase n=1 Tax=Candidatus Amoe... 252 1e-65 UniRef50_A9NEH2 Pseudouridylate synthase n=1 Tax=Acholeplasma la... 250 3e-65 UniRef50_UPI0000F2F657 tRNA pseudouridine synthase A n=1 Tax=Aci... 250 4e-65 UniRef50_Q6A6S8 tRNA pseudouridine synthase A n=6 Tax=Actinomyce... 248 1e-64 UniRef50_C2D958 Pseudouridylate synthase n=1 Tax=Atopobium vagin... 248 2e-64 UniRef50_C2BS51 Pseudouridylate synthase n=1 Tax=Mobiluncus curt... 247 3e-64 UniRef50_C4Z454 Pseudouridylate synthase n=1 Tax=Eubacterium eli... 247 4e-64 UniRef50_Q2NIY3 tRNA pseudouridine synthase A n=4 Tax=Candidatus... 245 9e-64 UniRef50_A0B7V0 tRNA pseudouridine synthase A n=1 Tax=Methanosae... 245 1e-63 UniRef50_Q6NKP7 Pseudouridylate synthase n=14 Tax=Embryophyta Re... 244 2e-63 UniRef50_UPI0001C30ED3 tRNA pseudouridine synthase A n=1 Tax=Con... 244 2e-63 UniRef50_Q7NAQ9 tRNA pseudouridine synthase A n=1 Tax=Mycoplasma... 244 2e-63 UniRef50_Q12VJ7 tRNA pseudouridine synthase A n=5 Tax=Archaea Re... 244 3e-63 UniRef50_C6HVK9 Pseudouridylate synthase n=1 Tax=Leptospirillum ... 244 3e-63 UniRef50_B3EQM8 Pseudouridylate synthase n=1 Tax=Chlorobium phae... 243 4e-63 UniRef50_O28544 tRNA pseudouridine synthase A n=2 Tax=Archaeoglo... 243 4e-63 UniRef50_B4U9D9 tRNA pseudouridine synthase A n=1 Tax=Hydrogenob... 243 5e-63 UniRef50_D1YY68 Pseudouridylate synthase n=1 Tax=Methanocella pa... 243 7e-63 UniRef50_C9RMQ6 Pseudouridylate synthase n=1 Tax=Fibrobacter suc... 240 4e-62 UniRef50_A9FHM9 Pseudouridylate synthase n=1 Tax=Sorangium cellu... 239 7e-62 UniRef50_Q6AD25 tRNA pseudouridine synthase A n=9 Tax=Bacteria R... 239 8e-62 UniRef50_B8JBC1 Pseudouridylate synthase n=4 Tax=Anaeromyxobacte... 238 1e-61 UniRef50_A8IW91 Pseudouridylate synthase (Fragment) n=1 Tax=Chla... 238 1e-61 UniRef50_A6Q408 Pseudouridylate synthase n=2 Tax=unclassified Ep... 238 2e-61 UniRef50_D1C2N5 Pseudouridylate synthase n=1 Tax=Sphaerobacter t... 237 3e-61 UniRef50_Q2FT01 Pseudouridylate synthase n=1 Tax=Methanospirillu... 236 6e-61 UniRef50_A8Z5T1 Pseudouridylate synthase n=4 Tax=Flavobacteriale... 236 7e-61 UniRef50_B1ZVD8 Pseudouridylate synthase n=2 Tax=Opitutaceae Rep... 236 7e-61 UniRef50_Q64EQ0 Pseudouridylate synthase n=2 Tax=environmental s... 235 1e-60 UniRef50_B5Y955 tRNA pseudouridine synthase A n=1 Tax=Coprotherm... 235 1e-60 UniRef50_C7PRM5 Pseudouridylate synthase n=1 Tax=Chitinophaga pi... 235 1e-60 UniRef50_A6EFU7 Pseudouridylate synthase n=1 Tax=Pedobacter sp. ... 235 2e-60 UniRef50_D1AVW7 Pseudouridylate synthase n=1 Tax=Streptobacillus... 234 3e-60 UniRef50_B6WBX6 Pseudouridylate synthase n=1 Tax=Anaerococcus hy... 234 3e-60 UniRef50_B6YTJ2 tRNA pseudouridine synthase A n=7 Tax=Thermococc... 233 4e-60 UniRef50_C6XU55 Pseudouridylate synthase n=1 Tax=Pedobacter hepa... 233 5e-60 UniRef50_C7LK25 Pseudouridylate synthase n=2 Tax=Candidatus Sulc... 233 7e-60 UniRef50_B5CR77 Pseudouridylate synthase n=1 Tax=Ruminococcus la... 232 9e-60 UniRef50_Q0W2P8 tRNA pseudouridine synthase A n=1 Tax=uncultured... 232 1e-59 UniRef50_D2VLE9 Predicted protein n=1 Tax=Naegleria gruberi RepI... 231 2e-59 Sequences not found previously or not previously below threshold: >UniRef50_Q15VG2 tRNA pseudouridine synthase A n=12 Tax=Gammaproteobacteria RepID=TRUA_PSEA6 Length = 263 Score = 371 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 168/260 (64%), Positives = 205/260 (78%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +IALG+EYDG++++GWQRQNEV SVQ+ LE+AL+++ANEPI V CAGRTDAGVH TGQVV Sbjct: 2 RIALGVEYDGARFHGWQRQNEVISVQQHLEEALTRIANEPIRVVCAGRTDAGVHATGQVV 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HFETT+ R D AWTLG+N LP I+VRWVK VP+DFHARFSATARRYRYIIYN+ LR Sbjct: 62 HFETTSQRPDRAWTLGINTYLPDTISVRWVKAVPEDFHARFSATARRYRYIIYNNTLRSG 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 +L+ GVTH Y LD E MH AAQ L+G++DF+SFRAV CQ++T R + HI V R G Y+ Sbjct: 122 ILANGVTHIYGDLDHELMHEAAQKLVGKHDFSSFRAVNCQAKTATRTMSHIRVKRMGDYI 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 V+D++ANAF+HHMVRNI G+L+ +G +P W+ ELL KDRT A TA GLYLV V Sbjct: 182 VIDVQANAFLHHMVRNITGTLVAIGHKEKPVEWVDELLEVKDRTKAGITALPNGLYLVHV 241 Query: 251 DYPDRYDLPKPPMGPLFLAD 270 YP+ + LPK MGPLFLAD Sbjct: 242 TYPETFALPKLKMGPLFLAD 261 >UniRef50_B3PFN7 Pseudouridylate synthase n=2 Tax=Gammaproteobacteria RepID=B3PFN7_CELJU Length = 299 Score = 339 bits (870), Expect = 6e-92, Method: Composition-based stats. Identities = 138/263 (52%), Positives = 187/263 (71%), Gaps = 1/263 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + ++ALG+EY G+ ++G+Q Q V++VQ+ LEKALS VA+EPIT+ CAGRTDAGVH T Sbjct: 28 MRRVALGVEYKGADFHGFQVQPNGVKTVQQSLEKALSIVADEPITLVCAGRTDAGVHATN 87 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QV+HF+T A R AW G+ +LP I +RW + V FHARFSA +R YRY++ + Sbjct: 88 QVIHFDTLAQRPLKAWMRGLGPHLPDTIGIRWAQDVSPGFHARFSAQSRTYRYLMSDGAS 147 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 PA+L V+ PLD M + A CL+GE+DFTSFRA QCQ+++P R + ++++ R G Sbjct: 148 SPALLHDQVSWSSRPLDVALMRQGAACLIGEHDFTSFRATQCQAKSPVRRIEYLHLVRRG 207 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 +V++I+ANAF+HHMVRNIVG LM+VGA + SW+ ++LAA+DRT A ATAK GLYL Sbjct: 208 ELIVMEIRANAFLHHMVRNIVGVLMQVGAGFKKPSWVGDVLAARDRTAAGATAKPNGLYL 267 Query: 248 VAVDYPDRYDLPKPPMGPLFLAD 270 VAVDYP + LP GPLF + Sbjct: 268 VAVDYPQEFSLPCCLPGPLFFPE 290 >UniRef50_A5WGT0 Pseudouridylate synthase n=6 Tax=Moraxellaceae RepID=A5WGT0_PSYWF Length = 302 Score = 339 bits (869), Expect = 8e-92, Method: Composition-based stats. Identities = 134/269 (49%), Positives = 177/269 (65%), Gaps = 2/269 (0%) Query: 2 SDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDA 61 S Q P ALG+E++G+ Y GWQRQ EV VQ+ LE+ LS++ANEPI V AGRTDA Sbjct: 29 SSTPQHPAQTYALGVEFNGANYRGWQRQQEVLCVQQVLEETLSKIANEPIEVVAAGRTDA 88 Query: 62 GVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYI 121 GVHG + HF T+A R W G N+ LP DIA+RW++ +PD FHARF A ARRYRYI Sbjct: 89 GVHGGNMLAHFTTSAKRGVYNWLRGANSLLPDDIAIRWIQPMPDTFHARFGAIARRYRYI 148 Query: 122 IYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHI 181 N RPAVL+ VTH +EPLD M +AA+ ++G +DF+SFRA CQS+ P RN+ H Sbjct: 149 TLNQPQRPAVLNHLVTHIHEPLDLALMQQAAEHIVGTHDFSSFRAAACQSKQPVRNIHHA 208 Query: 182 NVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAK 241 + +HG ++V DI+A+ F+HHMVRN++G+L +G +L AKDRT+A TA Sbjct: 209 KLFKHGEFIVFDIQADGFLHHMVRNLMGTLFAIGKGELQPEDYLRILQAKDRTIAPPTAP 268 Query: 242 AEGLYLVAVDYPDRYD--LPKPPMGPLFL 268 +GLY + YP+ LPK P+ P +L Sbjct: 269 PDGLYFINAYYPEPMQALLPKVPLAPQWL 297 >UniRef50_A1U0X5 Pseudouridylate synthase n=7 Tax=Bacteria RepID=A1U0X5_MARAV Length = 302 Score = 337 bits (864), Expect = 3e-91, Method: Composition-based stats. Identities = 139/259 (53%), Positives = 184/259 (71%), Gaps = 1/259 (0%) Query: 11 KIALGIEYDGSKYYGWQRQN-EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 ++A+ EYDG ++GWQ Q VRSV+ +L +A ++VA+ P+ + CAGRTDAGVH + QV Sbjct: 18 RVAIIFEYDGQAFHGWQLQKSGVRSVEAELSRAAARVADHPVDLVCAGRTDAGVHASFQV 77 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 HF+T ++R +W +G+N LP DI+V W DFHARFSA RRYRY+IYNH +RP Sbjct: 78 AHFDTPSVRNLRSWVMGMNTALPDDISVHWAGNGQGDFHARFSAIYRRYRYVIYNHPVRP 137 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 + V+ + PLDAERMHRA+Q L+GE+DF+SFRA CQSRTP R + I+VTR G + Sbjct: 138 GIQRGQVSWTFRPLDAERMHRASQALVGEHDFSSFRAAGCQSRTPVRFLEQISVTRCGEF 197 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 VV+D++ANAF+HHMVRNI G+LM VG QPE WI ++L +DR LA TA GLYLV Sbjct: 198 VVIDVQANAFLHHMVRNIAGALMAVGNGQQPEDWIGDILECRDRKLAGVTAPPYGLYLVD 257 Query: 250 VDYPDRYDLPKPPMGPLFL 268 V YP+ + +PK GP F+ Sbjct: 258 VGYPESFGIPKALCGPAFV 276 >UniRef50_B8D8Z8 tRNA pseudouridine synthase A n=6 Tax=Enterobacteriaceae RepID=TRUA_BUCA5 Length = 266 Score = 336 bits (862), Expect = 5e-91, Method: Composition-based stats. Identities = 150/260 (57%), Positives = 192/260 (73%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 V ALG+EYDGS Y+GWQRQ V S+QE++EKALS +AN I V CAGRTDAGVH GQ Sbjct: 6 VKTFALGVEYDGSYYHGWQRQKIVPSIQEEIEKALSIIANHKIDVVCAGRTDAGVHSIGQ 65 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V+HF+TTA RK ++W++GVN+ L +I+V WVK V ++FHAR+SA R YRYIIYN+ LR Sbjct: 66 VIHFKTTANRKKSSWSIGVNSYLSENISVVWVKEVTENFHARYSAITRSYRYIIYNYSLR 125 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 A+ + H Y L+ ++MH AQ LLGE+DFTSFRA+ CQS +PWRN+ +NV R Sbjct: 126 SAIFQTKLNHIYRKLNVDKMHFEAQFLLGEHDFTSFRALGCQSHSPWRNITKLNVFRFHN 185 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 +VVVDI AN+F+HHMVRNIVGSL+EVG + E WI +LL KDR+ A ATA A+GLYLV Sbjct: 186 WVVVDITANSFLHHMVRNIVGSLIEVGISKKKEYWIKDLLEKKDRSHAGATAPAKGLYLV 245 Query: 249 AVDYPDRYDLPKPPMGPLFL 268 V+YP ++LP+ +F Sbjct: 246 YVEYPLHFNLPRSAYTSIFF 265 >UniRef50_B0KCN3 tRNA pseudouridine synthase A n=9 Tax=Clostridia RepID=TRUA_THEP3 Length = 244 Score = 334 bits (857), Expect = 2e-90, Method: Composition-based stats. Identities = 91/244 (37%), Positives = 141/244 (57%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + + +EYDG+ Y+GWQ Q +VQE L+KA+ +V E + + A RTD GVH Q Sbjct: 1 MRNVMIVVEYDGTNYHGWQYQKNAVTVQEVLQKAIKKVTGEEVNLIGASRTDTGVHALYQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V +F+T +N+ LP DI V K V D FHAR+SA +RY+YII N + + Sbjct: 61 VANFKTNTKIPAEKLPYALNSVLPDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRKFQ 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + H PL+ E M +AA L+G +DF++F+A + R V + + ++ Sbjct: 121 MPTMRNYCWHISYPLNIEEMKKAASYLIGTHDFSAFKASGSSKTSTIRTVYDLTIEKNED 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 ++ ++I+AN F+++MVR IVG+L VG E + ++L +KDRT A TA +GLYL+ Sbjct: 181 FINIEIEANGFLYNMVRIIVGTLSYVGLGKIKEDEVYDILKSKDRTKAGITAPPQGLYLI 240 Query: 249 AVDY 252 + Y Sbjct: 241 KIIY 244 >UniRef50_Q21IY8 Pseudouridylate synthase n=2 Tax=Gammaproteobacteria RepID=Q21IY8_SACD2 Length = 289 Score = 333 bits (854), Expect = 4e-90, Method: Composition-based stats. Identities = 137/267 (51%), Positives = 173/267 (64%), Gaps = 6/267 (2%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVR-SVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + ++ L +EYDGS Y G+QRQ +VQ +LEKALS VANEP+T+ CAGRTDAGVH T Sbjct: 22 MRRVVLQVEYDGSPYCGFQRQLTAPNTVQAELEKALSSVANEPVTIVCAGRTDAGVHATS 81 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 Q+VHF+T A R AW GVN +LP I V K V DFHARFSA +R YRY+I+ ++ Sbjct: 82 QIVHFDTLAGRPSKAWLQGVNTHLPFSIRVISAKEVGFDFHARFSALSRTYRYVIHVSQV 141 Query: 128 RPAVLSKGVTHFYEP-----LDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHIN 182 R A L GVT P LD M AA LLGE+DFTSFR V CQ+ +P R + + Sbjct: 142 RSAHLVNGVTWVKLPQKLSGLDVPAMQEAASLLLGEHDFTSFRTVHCQAASPVRTMEVAD 201 Query: 183 VTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 V + G ++VV + ANAF+HHMVRNIVG L+ VG S + EL+ +DR+ AA TA A Sbjct: 202 VVQMGEFIVVQVTANAFLHHMVRNIVGVLLRVGRGELKPSRVTELIELRDRSQAAETAPA 261 Query: 243 EGLYLVAVDYPDRYDLPKPPMGPLFLA 269 GLY V V YP+R+ +P GP+FL Sbjct: 262 AGLYFVNVQYPERFAMPMHCQGPIFLP 288 >UniRef50_Q31HH6 tRNA pseudouridine synthase A n=4 Tax=Gammaproteobacteria RepID=TRUA_THICR Length = 262 Score = 330 bits (847), Expect = 3e-89, Method: Composition-based stats. Identities = 144/259 (55%), Positives = 184/259 (71%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + +A+GIEY G+ Y GWQ Q SVQ++LEKALS +A+EPI + CAGRTD GVH GQ Sbjct: 1 MTLLAIGIEYQGTAYCGWQHQKHCDSVQQQLEKALSYIADEPIGLNCAGRTDTGVHAIGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 + HFET A R D AW GVN LP DI V WVK +P+DFHARFSA AR+YRY+I+N + Sbjct: 61 IAHFETNASRPDKAWIQGVNTQLPNDIRVTWVKPMPEDFHARFSAVARQYRYVIFNRPVH 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 A+L+ VT PLD ++MH AAQ LLGENDF+SFRA CQ+ RNV ++ V+R G Sbjct: 121 SAILANRVTWENRPLDVKKMHAAAQDLLGENDFSSFRAAGCQASHANRNVQYLQVSRQGN 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 +V VDI+ANAF+HHMVRNIVG+L+EVG ++P W++ELL +DRT A TA A GLY V Sbjct: 181 FVFVDIQANAFLHHMVRNIVGTLLEVGRLDKPVEWVSELLKKQDRTQAGMTAPAAGLYFV 240 Query: 249 AVDYPDRYDLPKPPMGPLF 267 YP+ ++LP+ + L Sbjct: 241 NALYPESFELPRVVLDELL 259 >UniRef50_Q6FEV2 tRNA pseudouridine synthase A n=383 Tax=Proteobacteria RepID=TRUA_ACIAD Length = 271 Score = 330 bits (846), Expect = 4e-89, Method: Composition-based stats. Identities = 129/261 (49%), Positives = 180/261 (68%), Gaps = 1/261 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQN-EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + + A+GIE+ G +Y GWQ Q V S+QE +EK LS++A+EPI + AGRTDAGVH T Sbjct: 2 MQRYAVGIEFCGIRYRGWQTQQAGVPSIQETIEKVLSKIADEPIILHGAGRTDAGVHATN 61 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 V HF+T A+R W +G N+ LP DI+++W+K + DFHARF ATARRYRY++YN Sbjct: 62 MVAHFDTNAIRPQRGWLMGANSQLPKDISIQWIKEMNTDFHARFKATARRYRYVVYNTLN 121 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 RPA+L K VTH Y+ LD ++M AA+ G ++F +FRA CQS P R++ H +TRHG Sbjct: 122 RPALLHKQVTHVYQTLDVDKMMLAARKFEGTHNFETFRAASCQSSQPVRHLSHCRLTRHG 181 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 Y+V+DI+A+ F+HHMVRNI+G L+E+G I + AA+DR A TA A+GLY Sbjct: 182 RYLVLDIQADGFLHHMVRNIMGCLLEIGQGCYEIEHIDTMFAAQDRKAAGVTAPADGLYF 241 Query: 248 VAVDYPDRYDLPKPPMGPLFL 268 + YP+ ++LP+ P+GP +L Sbjct: 242 IQAYYPEHFELPQHPLGPHWL 262 >UniRef50_A4XKB7 tRNA pseudouridine synthase A n=11 Tax=Clostridia RepID=TRUA_CALS8 Length = 244 Score = 329 bits (843), Expect = 9e-89, Method: Composition-based stats. Identities = 89/244 (36%), Positives = 141/244 (57%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I L IEYDG+ Y+GWQ+Q ++VQ +E A+ ++ E + + +GRTD GVH GQ Sbjct: 1 MRNILLTIEYDGTNYFGWQKQPNKKTVQGVIEDAIKKITGEDVNLVGSGRTDRGVHALGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 +F+T + + L +N+ LP DI+++ V DF AR+SA + Y+Y+IYNH+ R Sbjct: 61 KANFKTESKIPTEKFPLALNSVLPNDISIKDAAEVSLDFSARYSAKQKTYKYLIYNHKFR 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 PA+L V HF LD M ++ + +GE DF+SF + ++ + R + +T Sbjct: 121 PAILCNYVYHFPYELDLVSMQKSCEYFIGEYDFSSFCSSGSETNSKVRRIFDCYLTFEND 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + + I AN F+++M R I G++++VG + I ++ +KDRT A T GLYLV Sbjct: 181 CIAIYITANGFLYNMARIIAGTILDVGVGRFKPTDIPLIIESKDRTKAGKTLPPWGLYLV 240 Query: 249 AVDY 252 V Y Sbjct: 241 DVVY 244 >UniRef50_B8I814 tRNA pseudouridine synthase A n=19 Tax=Clostridia RepID=TRUA_CLOCE Length = 245 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 96/245 (39%), Positives = 143/245 (58%), Gaps = 1/245 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + KI L IEYDG+ Y+GWQ Q ++VQE ++KALS++ E + V RTD GVH GQ Sbjct: 1 MRKIRLTIEYDGTNYHGWQIQKNAKTVQEVIQKALSKLLGEDVGVTGCSRTDVGVHAYGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V HF T + ++ +N LP DI ++ + VP++FHAR+SA ++YRY+IYN Sbjct: 61 VAHFLTDSKIPGDKFSYAINNLLPDDIVIKNSEEVPEEFHARYSAKGKKYRYLIYNSPHA 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT-RHG 187 A++ H L+ M +AA GE+DF +F+A Q R+ R + + V + Sbjct: 121 SAIMRNRSCHVRPELNVAEMQKAAGYFKGEHDFLAFQATGGQVRSTVREIYGMEVYVKED 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + +++ N F+++MVR I G+L+ VG ES I ++A DRT A TA A+GLYL Sbjct: 181 NMISIEVSGNGFLYNMVRIIAGTLIYVGMGKLHESEIPGIIAGLDRTKAGKTAPAQGLYL 240 Query: 248 VAVDY 252 V + Y Sbjct: 241 VQIYY 245 >UniRef50_A6TWE8 Pseudouridylate synthase n=8 Tax=Clostridiales RepID=A6TWE8_ALKMQ Length = 255 Score = 327 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 96/245 (39%), Positives = 138/245 (56%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I + IEYDG+ Y GWQ Q S+QE++ KAL +V E IT +GRTDAGVH GQ Sbjct: 1 MRNIMIEIEYDGTNYSGWQIQQNAPSIQEEIAKALKKVTGEEITTHGSGRTDAGVHAQGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V F+ + + +N LP DI + K +P+DFHAR+SA +RY Y I N+ Sbjct: 61 VASFQLHSKIPAERISFALNGKLPRDITILEAKEMPEDFHARYSAIGKRYGYCIMNNTHG 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 A+L H LD ++M +A++ LLG +DF F A Q ++ R + IN G Sbjct: 121 SALLRNYCYHVPYKLDLQKMKQASETLLGTHDFKGFMASGSQVKSTVRRIDEINFDTQGS 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + + ++ N F++ MVR IVGSL+ +G E + +L ++R +A TA A+GLYL Sbjct: 181 QIWITMQGNGFLYKMVRIIVGSLVGIGTGKIKEEALQNILETQNRRVAVKTAPAQGLYLQ 240 Query: 249 AVDYP 253 V YP Sbjct: 241 KVFYP 245 >UniRef50_A7NCA0 tRNA pseudouridine synthase A n=19 Tax=Francisella RepID=TRUA_FRATF Length = 258 Score = 326 bits (837), Expect = 4e-88, Method: Composition-based stats. Identities = 121/246 (49%), Positives = 164/246 (66%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + L IEY G Y GWQRQ+ SVQE+LEKALS++AN+ I V CAGRTD GVH T Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSLSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 +V+F + A R +AW GVNA LP DI + V+ V ++F++RF+A R Y YIIYN Sbjct: 61 IVNFYSNAYRPLSAWQRGVNALLPQDIKILAVQQVNNNFNSRFTAINRTYNYIIYNSATS 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + ++ LD ++M++A + LLGE DF+SFR+ QCQS TP+RN+ + G Sbjct: 121 SPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQGS 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 ++V ++ NAF+HHM+RN+VGSL++VG + WI +L AKDRT AA TAKA GLY V Sbjct: 181 FIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLYFV 240 Query: 249 AVDYPD 254 V+YP+ Sbjct: 241 GVEYPE 246 >UniRef50_B5CQB6 Pseudouridylate synthase n=9 Tax=Bacteria RepID=B5CQB6_9FIRM Length = 297 Score = 326 bits (837), Expect = 4e-88, Method: Composition-based stats. Identities = 87/254 (34%), Positives = 128/254 (50%) Query: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60 + + + + +I L + YDG+ Y GWQ QN V +++ +L L+Q+ + + V A RTD Sbjct: 18 IEKEDRKRMKRIRLTVAYDGTDYCGWQVQNNVATIEGELNTVLTQLTGQTVKVIGASRTD 77 Query: 61 AGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRY 120 AGVH G V F+T + + VNA LP DI V V D+H R T + Y Y Sbjct: 78 AGVHARGNVAVFDTESSIPPERFLYAVNALLPEDIVVVDSCEVAADWHPRHCNTEKTYEY 137 Query: 121 IIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMH 180 + N +L + + PLD ERM +AA L GE+DF SF V R + Sbjct: 138 RVLNQKLPDPMRRRDTYFVSFPLDLERMRQAAGYLEGEHDFKSFCNVHTHVEDTVRTIYR 197 Query: 181 INVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATA 240 + V R + ++ N F+++MVR + G+L+ VG I +L AKDR A T Sbjct: 198 LEVIREENVITFRVRGNGFLYNMVRILAGTLIGVGRGLIDPEEIPAMLEAKDRQAAGMTV 257 Query: 241 KAEGLYLVAVDYPD 254 +GL L+ +DY D Sbjct: 258 PPQGLTLMKIDYLD 271 >UniRef50_C4Z2W2 Pseudouridylate synthase n=10 Tax=Firmicutes RepID=C4Z2W2_EUBE2 Length = 253 Score = 325 bits (834), Expect = 9e-88, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 137/249 (55%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + +I L + YDG++Y GWQ Q E +++ L+KA+ ++ E + V A RTDAGVH G Sbjct: 1 MRRIKLIVAYDGTEYSGWQIQPEAPTIEMCLDKAIRELTGENVHVTGASRTDAGVHAYGN 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V F+T + +T +N LP I ++ V DFH R T + Y Y I N + Sbjct: 61 VAVFDTESTIPGDRFTFALNRFLPDSIVIQDSWEVSGDFHPRHCNTRKTYEYRILNTVVP 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 H +D E+M AA ++GE+DF SF V+ Q+ + R + + V + G Sbjct: 121 LPQKRNFTWHVTGSIDIEKMKEAAAYIVGEHDFKSFCCVRTQAESTVRTIYSLEVLQEGS 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 +++ IK N F+++MVR I G+L++VG ++ ++L AKDRT+A TA +GL LV Sbjct: 181 EIIIRIKGNGFLYNMVRIITGTLIQVGKGRFKPEYVKQMLEAKDRTVAGQTAPPQGLTLV 240 Query: 249 AVDYPDRYD 257 ++Y D D Sbjct: 241 GIEYVDNDD 249 >UniRef50_Q8XLQ0 tRNA pseudouridine synthase A 1 n=12 Tax=Clostridium RepID=TRUA1_CLOPE Length = 248 Score = 324 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 142/248 (57%), Gaps = 4/248 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQN----EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVH 64 + I + ++YDGSKY GWQ+QN V +VQ+KLEK L+++ +E I + GRTD+GVH Sbjct: 1 MRNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVH 60 Query: 65 GTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYN 124 V +F+T +L +N LP DI V ++ + FHARF+ ++ Y Y I N Sbjct: 61 AKNYVANFKTNSLMTLEQIIEYINEYLPEDIRVTEIREASERFHARFNVKSKTYEYTIDN 120 Query: 125 HRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT 184 ++ + L K H E LD E M A+ LLG +DF SF +++ ++++ R + I Sbjct: 121 NKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTLRTINSIEFH 180 Query: 185 RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 + + + I N F+ +MVR +VG+L++VG +I ++L AK+R A+ A A G Sbjct: 181 ENNNILSIKINGNGFLLNMVRIMVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPAHG 240 Query: 245 LYLVAVDY 252 L L+ ++Y Sbjct: 241 LCLLELNY 248 >UniRef50_B9M6W5 tRNA pseudouridine synthase A n=8 Tax=Deltaproteobacteria RepID=TRUA_GEOSF Length = 244 Score = 323 bits (829), Expect = 3e-87, Method: Composition-based stats. Identities = 91/244 (37%), Positives = 137/244 (56%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I L IEYDG+ Y GWQ Q ++Q+ +E++L ++ + + + +GRTDAGVH G Sbjct: 1 MRNIKLIIEYDGTAYCGWQLQPNGITIQQVIEESLEKMLGQSVRLQSSGRTDAGVHALGM 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V F+T A++ G+N LP DIA+R VP F+ R A ++ YRY IYN + R Sbjct: 61 VAVFKTQKDLPVRAFSDGLNCLLPPDIAIRDASEVPLSFNPRADAISKHYRYTIYNSKRR 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + H L+ E M A +GE+DF +FRA C ++T R + H++V + G Sbjct: 121 SPLTRLNSWHLRGILNMELMQLGASHFVGEHDFAAFRASNCVAKTTIRRMFHVSVAKVGD 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 V++D+ + F+ +MVR I G+L+ VG S I LLA DR+ + TA +GL L+ Sbjct: 181 SVIIDVHGSGFLKNMVRVIAGTLVAVGQGKLDPSAIPGLLAGGDRSASGITAPPQGLCLM 240 Query: 249 AVDY 252 V Y Sbjct: 241 EVFY 244 >UniRef50_Q2LUS6 Pseudouridylate synthase n=5 Tax=Bacteria RepID=Q2LUS6_SYNAS Length = 259 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 92/245 (37%), Positives = 144/245 (58%), Gaps = 1/245 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 I L +EYDG+ Y GWQRQ + ++Q+ LE++++++ EP+ + +GRTDAGVH Q Sbjct: 15 RRNIKLVLEYDGTAYRGWQRQGNLPTIQKILEESIARITQEPVILHGSGRTDAGVHALNQ 74 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V +F T++ A G+N+ LPGDI +R + V ++FH+R+SA ++ Y Y I N +R Sbjct: 75 VANFRTSSRIPAANLLRGLNSLLPGDIVIRETEDVDEEFHSRYSAKSKSYLYRILNSPVR 134 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + LD E+M A L G++DFTSF A ++ R ++ + R Sbjct: 135 SPLQRNSAWFIRCCLDLEKMAGAISLLCGKHDFTSFCAAGSDVKSCVRTIIRAEIERETE 194 Query: 189 YVV-VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 V+ + ++A+ F+ HMVRNIVG+L+E+GA + ++L AKDR A TA +GL+L Sbjct: 195 QVITISVEADGFLRHMVRNIVGTLVEIGAGQDSSEIMRDILEAKDRGCAGITAPPQGLFL 254 Query: 248 VAVDY 252 V Y Sbjct: 255 QKVSY 259 >UniRef50_B5EFM8 tRNA pseudouridine synthase A n=4 Tax=Bacteria RepID=TRUA_GEOBB Length = 250 Score = 323 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 97/250 (38%), Positives = 138/250 (55%), Gaps = 1/250 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I L IEYDG+ Y GWQ Q R+VQE L++AL+ + E + +GRTDAGVH G Sbjct: 1 MRNIKLIIEYDGTAYCGWQVQPNGRTVQEVLQEALAAMLGEKTPLHGSGRTDAGVHARGM 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V F+T A+ G+N LPGDIAVR VP +FH RF A A+ YRY I LR Sbjct: 61 VACFKTDKAMPLRAFREGLNCLLPGDIAVREACEVPLEFHPRFDAHAKHYRYTILLDDLR 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + V LD + M A +GE+DF +FRA C ++T R + +++ + G Sbjct: 121 SPLSRLTVWRLKGKLDIQAMRAACAAFVGEHDFAAFRASNCAAKTTVRRIYSMDLVQEGC 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTL-AAATAKAEGLYL 247 + +D+K + F+ +MVR I G+L+EVG + +A LL DR + T +GL L Sbjct: 181 LLHLDVKGSGFLKNMVRIITGTLIEVGQGKKSVEDVARLLQGGDRQQNSGMTVPPQGLCL 240 Query: 248 VAVDYPDRYD 257 + V Y ++ D Sbjct: 241 MQVYYQEKCD 250 >UniRef50_C6D4K9 Pseudouridylate synthase n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D4K9_PAESJ Length = 246 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 132/246 (53%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + IA + YDG+ + G+Q Q R++Q+++E A+ ++ E I + +GRTDAGVH GQ Sbjct: 1 MRNIAATVSYDGTDFNGFQSQPYGRTIQQEIELAIKKLTGEDIIILGSGRTDAGVHANGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V +F T + W + +N LP DI + VP+ FH+R SA + YRY I + Sbjct: 61 VFNFLTESTIPAERWAIALNTRLPKDIVILEAHEVPEAFHSRRSAKRKTYRYTIDMGKFP 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + H PL+ E M + L+GE+DFTSF ++ R + + R G Sbjct: 121 DVFYRRYAFHHPTPLNVEAMQKGLSFLVGEHDFTSFTSIHSTKPHHVRTIYEAYLEREGQ 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + + + N F+++M+R ++G+L+ VG +A +L + R+LA TA GL L+ Sbjct: 181 MLHMYMTGNGFLYNMIRIVMGTLLHVGHGKLKPEDMARILEGRKRSLAGPTAMPHGLMLM 240 Query: 249 AVDYPD 254 V+YP+ Sbjct: 241 KVEYPE 246 >UniRef50_UPI0001C37706 tRNA pseudouridine synthase A n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37706 Length = 257 Score = 320 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 83/244 (34%), Positives = 125/244 (51%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + + I Y G+ Y+G+Q QN +VQ LEK LS+V NEP+++ RTD GVH Sbjct: 1 MRNLKVTIAYRGTNYHGFQIQNNAVTVQGTLEKHLSKVLNEPVSITGCSRTDTGVHANMF 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 + +T + + GVN LP DI++ + VP DFHARF + Y Y ++ + Sbjct: 61 CFNVKTNSRISTLGFCRGVNGELPDDISILSCEEVPIDFHARFDCKGKEYIYKMHCSESK 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 H+ P D E +AAQ +G +DF+SF A T R + + G Sbjct: 121 DPFAPDMKFHYRRPFDIEAARKAAQYFVGTHDFSSFCADCTNVSTTVRTIYSFKIENSGD 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 V++ +K N F+++M+R + G+L++V + +L AKDR A TA A GLYL Sbjct: 181 TVIMLVKGNGFLYNMIRIMAGTLIDVSEKRFSPDDMPRILEAKDRLQAGRTAMAHGLYLN 240 Query: 249 AVDY 252 V Y Sbjct: 241 RVFY 244 >UniRef50_Q8K9U4 tRNA pseudouridine synthase A n=2 Tax=Buchnera aphidicola RepID=TRUA_BUCAP Length = 263 Score = 320 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 121/250 (48%), Positives = 178/250 (71%), Gaps = 1/250 (0%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 K ALG+EYDGS Y+GWQ Q + ++Q ++EKALS++AN + V CAGRTD+GVH GQV Sbjct: 7 KKFALGVEYDGSYYHGWQSQKGLSTIQSEIEKALSKIANHQVNVICAGRTDSGVHSIGQV 66 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 +HF + + R D +W +GVN+ L +I+V+W+K V ++F+AR+SA +R YRYIIYNH+ R Sbjct: 67 IHFTSISFRSDFSWIVGVNSYLSKNISVKWIKEVSENFNARYSAISRSYRYIIYNHKCRS 126 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 A+ H Y+ L+ ++M+ AQ LLGE+DF+SFR+ CQSR+P+R + +N+ R Sbjct: 127 AIFRNRSNHVYKELNVDKMYFEAQSLLGEHDFSSFRSSGCQSRSPFRTITDLNIRRLKNL 186 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 V++DI AN+F++HMVRNIVGSL+++ + + ++I ++L KDR A T A GLYL Sbjct: 187 VIIDITANSFLYHMVRNIVGSLIQINDNTKK-NYIKKILDKKDRNYAGPTVSARGLYLFF 245 Query: 250 VDYPDRYDLP 259 V YP ++LP Sbjct: 246 VKYPMCFNLP 255 >UniRef50_Q1QY44 Pseudouridylate synthase n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QY44_CHRSD Length = 290 Score = 319 bits (819), Expect = 6e-86, Method: Composition-based stats. Identities = 143/256 (55%), Positives = 175/256 (68%) Query: 14 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFE 73 +G+EYDGS Y GWQR SVQ LE ALS++AN P+ V C+GRTD+GVH T QVVHF+ Sbjct: 1 MGVEYDGSAYCGWQRLKHAASVQGTLEAALSRIANAPVQVLCSGRTDSGVHATRQVVHFD 60 Query: 74 TTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 R AW G NANLP D+AVRWV V DDFHAR SA ARRYRY+I N RP + Sbjct: 61 APVTRTQKAWLFGANANLPRDVAVRWVVPVADDFHARLSALARRYRYVILNQPSRPVLER 120 Query: 134 KGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVD 193 T EPLDAERMH AAQ L+GE+DF+SFRA CQS++ WR+V I V R+G VV+D Sbjct: 121 ANATWCREPLDAERMHAAAQALVGEHDFSSFRAAGCQSKSRWRHVHFIEVRRYGQLVVID 180 Query: 194 IKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYP 253 I+ANAF+HHM+RNI G+L+ VG + ++ ELLA +DRT TA GL+ V Y Sbjct: 181 IQANAFLHHMIRNIAGALVAVGRGDHSTGYLGELLALRDRTQGNVTAPGCGLHFVDALYD 240 Query: 254 DRYDLPKPPMGPLFLA 269 +R+ LPK P+GP LA Sbjct: 241 ERFVLPKEPLGPNLLA 256 >UniRef50_Q0AGX7 tRNA pseudouridine synthase A n=26 Tax=Proteobacteria RepID=TRUA_NITEC Length = 277 Score = 319 bits (818), Expect = 6e-86, Method: Composition-based stats. Identities = 119/249 (47%), Positives = 160/249 (64%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 KI L +EYDG Y GWQ+Q + SVQ +LE ALS++A+ I V AGRTDAGVH QVV Sbjct: 2 KIVLILEYDGRGYCGWQKQPDRISVQSRLESALSRIASSQIQVVAAGRTDAGVHALCQVV 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HFET +R AW G NA LP DI+V W V DDFHARFSAT R Y Y + + RP Sbjct: 62 HFETHVIRPLTAWVRGANALLPDDISVLWASEVNDDFHARFSATERTYLYYLLSRPARPG 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + + LD E+M AA+ L+GE+DF++FR+ +CQ++ R ++ +++++ + Sbjct: 122 IFQGKTGWTHYSLDLEKMQTAARFLIGEHDFSAFRSAECQAKNAIRKLVRLDISQSEQFF 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 V + ANAF+HHMVRNI+G+L+ +G P WI LL +DRTLAA T +GLYL V Sbjct: 182 VFEFCANAFLHHMVRNILGALIYIGQGKYPPEWIQILLGKRDRTLAAPTFSPDGLYLAGV 241 Query: 251 DYPDRYDLP 259 Y R++LP Sbjct: 242 RYDARWNLP 250 >UniRef50_Q3A3B5 tRNA pseudouridine synthase A n=6 Tax=Desulfuromonadales RepID=TRUA_PELCD Length = 252 Score = 319 bits (818), Expect = 7e-86, Method: Composition-based stats. Identities = 102/241 (42%), Positives = 144/241 (59%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 + L IEYDG+ Y GWQRQ SVQ+ +E+AL++V P ++ +GRTDAGVH G V H Sbjct: 4 VRLIIEYDGTPYVGWQRQPNGLSVQQVVEEALAKVCGGPHSLVSSGRTDAGVHARGMVAH 63 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 F T AA+ GVN LP IAVR +PDDFHAR+SA + YRY IY +R + Sbjct: 64 FVTPQPLPMAAYREGVNRFLPAQIAVRDAALMPDDFHARYSAVGKWYRYSIYRSPVRSPL 123 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVV 191 + H LD + M +AA+ L+G +DF +FRA C +RT R V +++ +V Sbjct: 124 ACRFSWHVRTVLDLQAMRQAARLLVGRHDFAAFRASGCAARTTVREVFSVDIVDAEEWVY 183 Query: 192 VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVD 251 VD++ + F+ +MVR +VG+L+EVG +P + +LA R + TA A+GL L+ V Sbjct: 184 VDVRGSGFLRNMVRIMVGTLVEVGRGARPPEEVGAMLAGGCRKQSGITAPAQGLCLMEVA 243 Query: 252 Y 252 Y Sbjct: 244 Y 244 >UniRef50_A3ZQX0 Pseudouridylate synthase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQX0_9PLAN Length = 260 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 98/251 (39%), Positives = 143/251 (56%), Gaps = 4/251 (1%) Query: 8 PVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 P + L + YDG+ Y GWQ QN+ R++Q LE+ L ++ E I V +GRTD+GVH G Sbjct: 5 PERALQLIVSYDGTNYAGWQIQNDQRTIQGALERTLLKITGEKIRVTGSGRTDSGVHAIG 64 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QVV F + +NA LP DI V+ + +F+A A +RYRY++ R+ Sbjct: 65 QVVSFRMQSQLSPDVMRRALNAELPPDIVVQSARNAIPEFNAIDCAIKKRYRYLLQEGRI 124 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR-- 185 + + L+ M AAQ L+GE+DF SF +V + T R+V + V R Sbjct: 125 DDVFSRQYAWFVKKELNFAAMQAAAQHLIGEHDFASFESVGSERMTTVRHVFDVQVLRSE 184 Query: 186 --HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 V ++++AN F+++MVR IVG+L++VG +P W+AE+LAAK RT TA A Sbjct: 185 RHEFDKVAIEVEANGFLYNMVRIIVGTLVDVGKGRRPPEWVAEVLAAKKRTAGGMTAPAH 244 Query: 244 GLYLVAVDYPD 254 GLYL+ VDYP+ Sbjct: 245 GLYLLRVDYPE 255 >UniRef50_B9TJ99 Pseudouridylate synthase n=4 Tax=cellular organisms RepID=B9TJ99_RICCO Length = 283 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 115/249 (46%), Positives = 160/249 (64%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++ LG+EYDGS++ GWQ Q +VQ+ L+ AL+Q+A + V AGRTDAGVH QV Sbjct: 26 RVVLGLEYDGSRFCGWQSQPSGAAVQDCLQTALAQMAGHEVKVSAAGRTDAGVHALSQVA 85 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+T R AW GVNA LP + V W V +FHARFSA R Y+Y++ + PA Sbjct: 86 HFDTAVTRPQNAWVRGVNAFLPTGVRVLWASEVDVEFHARFSAERRSYQYVLQVSPVAPA 145 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 VLS V ++ PLD + M AA LLGE+DF++FRA +CQ++TP ++++ ++ + + Sbjct: 146 VLSGKVGWYHRPLDLKAMRNAASILLGEHDFSAFRASECQAKTPIKHLIQADIRQFDNVI 205 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + + A+AF+HHMVRN+VGSL+ VG P W+ LL KDR LAA T +GLYL V Sbjct: 206 LFEFTASAFLHHMVRNLVGSLVYVGKGEHPPEWMRTLLEQKDRRLAAPTFMPDGLYLTGV 265 Query: 251 DYPDRYDLP 259 Y R++LP Sbjct: 266 HYDPRWNLP 274 >UniRef50_Q1K346 Pseudouridylate synthase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K346_DESAC Length = 251 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 100/248 (40%), Positives = 144/248 (58%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++ L +EYDG+ Y GWQ Q ++VQE++E AL+QV + V+ +GRTDAGVH Sbjct: 3 RLCLTVEYDGTSYGGWQVQPNAQTVQEQIESALAQVIGASVRVYSSGRTDAGVHAIDMKA 62 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+ L +A+ GVN LP DI VR V V DDFHARF A + YRY +Y R+R Sbjct: 63 HFDVETLLPLSAYREGVNRFLPQDIVVRQVCRVADDFHARFDAQGKWYRYRLYRGRIRSP 122 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + H LD E M +AA L+G +DF +F+A C + T R + + + G + Sbjct: 123 LHRLTSWHVAGGLDVEAMTQAADALVGTHDFAAFQASGCAAATTQRTLFEVLLIDEGDEL 182 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 ++D++ + F+ +MVR IVGSL+EVG +AE+LA+ R A TA A+GL L+ V Sbjct: 183 IIDVRGSGFLKNMVRIIVGSLVEVGRAKLTAGQLAEILASGQRCRAGLTAPAQGLCLMQV 242 Query: 251 DYPDRYDL 258 Y ++ Sbjct: 243 WYEKNIEI 250 >UniRef50_D2RNY1 tRNA pseudouridine synthase A n=2 Tax=Acidaminococcus RepID=D2RNY1_ACIFE Length = 245 Score = 317 bits (813), Expect = 2e-85, Method: Composition-based stats. Identities = 101/244 (41%), Positives = 137/244 (56%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I + YDG++Y G+QRQ VQ+ LEKAL++V EPI + AGRTDAGVH GQ Sbjct: 2 IRTIKATVAYDGTRYQGFQRQKNGVGVQQVLEKALTEVLKEPILIKAAGRTDAGVHALGQ 61 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V+ F T++ + + +LP DIA+R + V DDFHARF A + Y+Y IY L Sbjct: 62 VISFATSSRIPPENYRRALEPHLPPDIAIREAEVVRDDFHARFDAVDKTYQYKIYYSPLP 121 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 E LD E M+RAA LLG++DFTSF+ Q +P R + + + G Sbjct: 122 DPTQRNTTWEIREKLDVEAMNRAAALLLGKHDFTSFKNQGSQDTSPVRTLTEAHWVQDGN 181 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 I + F++ MVRNIVG L+ VG E A ++AAK+R A A A+GLYL+ Sbjct: 182 LYTFTITGDGFLYRMVRNIVGCLVRVGTGQWNEEDFARVMAAKNRKQAGMAAPAQGLYLM 241 Query: 249 AVDY 252 V Y Sbjct: 242 HVSY 245 >UniRef50_Q0AUL4 tRNA pseudouridine synthase A n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=TRUA_SYNWW Length = 249 Score = 316 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 96/247 (38%), Positives = 143/247 (57%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + +I L +EYDGS Y+G+Q Q +VQ +LEKA+ +++ E T+ CAGRTDAGVH GQ Sbjct: 1 MSRIKLLLEYDGSNYHGFQLQKNANTVQAELEKAIYRLSGERATIVCAGRTDAGVHAWGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 VV F++ + W +N+ LP DI V + +F+ RF A + Y Y+IY + + Sbjct: 61 VVAFDSCSTIPGDRWAYALNSQLPEDIQVLESQETRAEFNPRFDALKKCYGYLIYRQKKK 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 EPL E M AA+ L G +F SF A +RT R + H ++ GP Sbjct: 121 ATFYRHYALCNTEPLKLEAMQEAAEILKGRQNFRSFCASGSSARTFEREIFHCRLSEKGP 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 +++ I A+ F+++MVR I G+L+EVG P + E++A++DRT A TA +GLYL+ Sbjct: 181 CLLLHIAADGFLYNMVRIITGTLLEVGKGKYPPQHLREIIASQDRTRAGPTAPPQGLYLL 240 Query: 249 AVDYPDR 255 V YP+ Sbjct: 241 QVFYPED 247 >UniRef50_A0L9F6 Pseudouridylate synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9F6_MAGSM Length = 270 Score = 315 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 116/257 (45%), Positives = 157/257 (61%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + + +E+DGS + GWQ Q SVQ+ LE+AL+ + NEPI V +GRTDAGVH TGQ Sbjct: 12 LQRFRITVEFDGSAFSGWQSQQNAPSVQQALEQALAPLHNEPIRVHGSGRTDAGVHATGQ 71 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V HF+ A R A + +N P IAV + V + FHAR+ A R+Y Y I ++ Sbjct: 72 VAHFDAPAHRDAATYLRILNVRTPHSIAVLACQPVAESFHARYDAYYRQYLYRINTRKIP 131 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 PA+ V H+ LDAER+ A+ LLG +DF+SFRA CQS++P + + I + G Sbjct: 132 PALERSRVWHYPYLLDAERLAEASALLLGTHDFSSFRAAGCQSKSPVKFMRLIQWQQRGD 191 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 V I ANAF+ HMVRN+VG+L+ VG + P + +AELLAA+DR A TA A GLYL Sbjct: 192 EWQVSIGANAFLQHMVRNLVGTLVLVGKGDWPVARVAELLAARDRVQAGPTAPAWGLYLT 251 Query: 249 AVDYPDRYDLPKPPMGP 265 + YP P PP+ P Sbjct: 252 HICYPGDQGEPCPPITP 268 >UniRef50_A0LIV1 Pseudouridylate synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LIV1_SYNFM Length = 261 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 95/256 (37%), Positives = 140/256 (54%), Gaps = 1/256 (0%) Query: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60 M+ P L +EYDGS Y+GWQRQ V ++QE LE L + P+ V +GRTD Sbjct: 1 MNQYDLPERKNFKLILEYDGSHYHGWQRQLGVLTIQEVLESRLEVMLQSPVGVRASGRTD 60 Query: 61 AGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRY 120 AGVH GQVV+F + G+N+ LP DI V + + FHARFSAT + Y Y Sbjct: 61 AGVHACGQVVNFHVHTRLRPEEILRGINSLLPPDIVVLHAEVAAESFHARFSATGKTYEY 120 Query: 121 IIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMH 180 I N +R A+ + H +PL+ +RM LLG +DF +F A + ++ R + Sbjct: 121 HILNRPIRSALQRRYAWHVPQPLEPQRMRECLGSLLGRHDFAAFMASGSKVKSTERTIRR 180 Query: 181 INVTR-HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAAT 239 ++ + + +AN F+ HMVRN+VG+++EVG + ++L+++DR A T Sbjct: 181 ADLDCLENGEMRLVFEANGFLRHMVRNLVGTIVEVGRGVRAPEEFLDILSSRDRKRAGMT 240 Query: 240 AKAEGLYLVAVDYPDR 255 A A GL+L AV Y + Sbjct: 241 APAHGLFLTAVHYTED 256 >UniRef50_C6J6C3 Pseudouridylate synthase n=2 Tax=Bacillales RepID=C6J6C3_9BACL Length = 261 Score = 314 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 85/257 (33%), Positives = 129/257 (50%), Gaps = 10/257 (3%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + + + YDG+ Y+G+Q Q +VQ+ +E A+ Q+ E + + +GRTDAGVH Q Sbjct: 1 MRNLLMTVSYDGTNYFGFQTQPGGNTVQDHIEGAIRQLTGETVKIHGSGRTDAGVHARQQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 HF T + W L +NA LP DI V + VP FH+R SA + YRY I +R Sbjct: 61 PFHFHTDSRIPVERWCLALNARLPSDIRVLTAREVPLTFHSRHSAKRKTYRYTINTNRFP 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG- 187 H L+ + M + L+G +DFTSF + Q + R + + Sbjct: 121 DVFQRNYQFHHPGQLNVDAMQASLPYLVGTHDFTSFASRQSTKLSHVRTIYDARIVVDSL 180 Query: 188 ---------PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAA 238 V + + F+ HMVR IVG+L+E+G + I +L AKDRT A Sbjct: 181 AKIPGTTGQGIVHFYVTGSGFLQHMVRIIVGTLIEIGEGKRTPESIQAILEAKDRTAAGP 240 Query: 239 TAKAEGLYLVAVDYPDR 255 TA+++GL L +V+Y + Sbjct: 241 TAESKGLMLWSVEYEEE 257 >UniRef50_A4BHD0 Pseudouridylate synthase n=1 Tax=Reinekea blandensis MED297 RepID=A4BHD0_9GAMM Length = 286 Score = 312 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 117/261 (44%), Positives = 169/261 (64%), Gaps = 2/261 (0%) Query: 10 YKIALGIEYDGSKYYGWQRQN-EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 ++I L +EY G+ ++GWQ Q V ++Q LE A+++VA+EP++ AGRTDAGVH T Q Sbjct: 14 HRIVLCLEYKGTAFHGWQIQKSGVSTIQAALEAAIAKVADEPVSTIVAGRTDAGVHATNQ 73 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 +VHF+T A R D W +G+N LP DI+V+WV V + FHARFSA R YR+II+N+ ++ Sbjct: 74 IVHFDTRAQRSDYGWKMGINGRLPDDISVKWVTQVDEHFHARFSAQERAYRFIIHNNWVK 133 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 A+L + T LD M +AA LLG +DF+SFRA +CQ+ +P R + + V R G Sbjct: 134 SALLHEVTTWEQYELDVGLMQQAANRLLGTHDFSSFRAAECQAHSPVRTLRELTVARFGE 193 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 ++V+ +A+ F+HHMVRN+VG ++ +G +P W +++L KDR TAK GLY V Sbjct: 194 FIVIQARADGFLHHMVRNLVGVMLPIGRGRKPVDWASDVLNYKDRRRGGVTAKGNGLYFV 253 Query: 249 AVDYPDRYDLPKPPMGPLFLA 269 Y + DLP GP FL+ Sbjct: 254 RASY-NVGDLPSADPGPAFLS 273 >UniRef50_A1AXN3 Pseudouridylate synthase n=3 Tax=Bacteria RepID=A1AXN3_RUTMC Length = 247 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 110/243 (45%), Positives = 165/243 (67%), Gaps = 1/243 (0%) Query: 11 KIALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 KIALG+ Y G+ ++GWQ Q +R+VQ+ +E+ALS VAN P+ VFC+GRTDAGVH T QV Sbjct: 2 KIALGVAYLGTNFHGWQCQKPNIRTVQQVVEQALSSVANHPVRVFCSGRTDAGVHATCQV 61 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 +HFET R++ W G NANLP D+ WVK V D+FHARFSA AR+Y Y I+N ++R Sbjct: 62 IHFETNIKRENKVWLFGGNANLPSDVNFTWVKHVNDNFHARFSAIARQYNYKIHNTKVRC 121 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 ++++ + LD M++A++ L+G+++F++FR CQ+++ + + I + + Sbjct: 122 SIITAHSLWESKKLDIMAMNKASKYLIGKHNFSAFRGSLCQAKSSIKTIEFIKLNKCDDN 181 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 +++DIKA+AF+HHMVRNIVG+L++VG + W+ E+L K R AA A + GLY + Sbjct: 182 ILLDIKADAFLHHMVRNIVGTLLKVGKGEKSIEWVKEILDNKQRKQAAPAAPSHGLYFIK 241 Query: 250 VDY 252 Y Sbjct: 242 AFY 244 >UniRef50_C8NBU9 Pseudouridylate synthase n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NBU9_9GAMM Length = 265 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 128/262 (48%), Positives = 173/262 (66%), Gaps = 3/262 (1%) Query: 10 YKIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + A+G+EYDG+ Y GWQRQ ++QE+LE ALSQVA P+ CAGRTDAGVH T Q Sbjct: 3 TRYAVGLEYDGTHYAGWQRQPFFAATIQEQLECALSQVAAHPVETTCAGRTDAGVHATAQ 62 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V+HF+T A R D AW G N LP DI ++W++ VP +FHAR+SA R YRY+I + Sbjct: 63 VIHFDTGAARSDFAWLAGANRYLPADIRLQWIRAVPAEFHARYSARERHYRYLIRHRAQP 122 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 A+ ++ + LDA MH AAQ L+GE+DF++FRA +CQ+++PWR + I+V Sbjct: 123 SALWARRCHWHKKSLDAAAMHSAAQALIGEHDFSAFRAAECQAKSPWRFIRSIDVRERHG 182 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 ++ VDI NAF+HHMVRNIVG+L+ VG + +W E+LA++DR A TA A+GLY Sbjct: 183 WIAVDICGNAFLHHMVRNIVGTLLAVGDGRRDTAWPGEVLASRDRRCAGVTAPAQGLYFH 242 Query: 249 AVDYPDRYDLPKPPMGPLFLAD 270 V YP Y LP P P ++ D Sbjct: 243 GVAYPREYALPAFP--PAWIPD 262 >UniRef50_C4Z854 Pseudouridylate synthase n=3 Tax=Clostridiales RepID=C4Z854_EUBR3 Length = 276 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 91/244 (37%), Positives = 137/244 (56%), Gaps = 1/244 (0%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVR-SVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + YDG++Y GWQ Q ++Q KL+ LS +A +P+ V +GRTDAGVH GQ Sbjct: 28 QNYKIIVAYDGTRYKGWQVQKSTDDTIQGKLQHVLSTLAGKPVEVIGSGRTDAGVHAVGQ 87 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V F + +N +LP DIAV + VPD FHAR++A ++ Y Y I+ + Sbjct: 88 VASFHMPKHFSKDEIFIWLNEHLPADIAVTDISNVPDRFHARYNAVSKTYVYTIHTGIVS 147 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 K V + +PLD +RM +AA LLGE+DF +F + ++ R + I++ + G Sbjct: 148 DVFRRKYVYDYDKPLDTDRMKKAAAYLLGEHDFKAFCGNRHMKKSTVRTIFSIDIEKTGA 207 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 +V+ + F+ +M+R I G+L+EVG + + E+LA+KDR A TA A GL L Sbjct: 208 DIVISYTGDGFLQNMIRIITGTLIEVGDGRKNPDAVMEILASKDRAQAGYTAPACGLRLE 267 Query: 249 AVDY 252 VDY Sbjct: 268 RVDY 271 >UniRef50_C0EKI9 Pseudouridylate synthase n=6 Tax=Neisseriaceae RepID=C0EKI9_NEIFL Length = 281 Score = 311 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 110/262 (41%), Positives = 159/262 (60%), Gaps = 4/262 (1%) Query: 1 MSDQQ---QPPVYKIALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVANEPITVFCA 56 M++Q + + AL + YDGS++YGWQ+Q ++ +VQ LE+ALS +A E I A Sbjct: 1 MTEQANTTGHLMQRWALTLSYDGSRFYGWQKQAGDLPTVQTALEQALSSIAGEQINTIVA 60 Query: 57 GRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATAR 116 GRTD GVH T QVVHF+T+ R + AW GVNA+LP +AV + V FHARF A R Sbjct: 61 GRTDTGVHATAQVVHFDTSVSRPEQAWVRGVNAHLPDGVAVLVAQKVAPHFHARFDAYGR 120 Query: 117 RYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWR 176 YRY++ + +R +L V + LD M +AA L GE+DF+SFRA +CQ+++P + Sbjct: 121 HYRYLLESSPVRSPLLVGRVGWTHLKLDLNLMRQAAALLEGEHDFSSFRAAECQAKSPVK 180 Query: 177 NVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLA 236 + ++ Y+ +D+ NAF+HHMVRNI+G+L+ VG+ + AK R A Sbjct: 181 TLYSTKISGTSRYLCLDLHGNAFLHHMVRNIMGALVYVGSGRISVDEFESVFHAKSRLKA 240 Query: 237 AATAKAEGLYLVAVDYPDRYDL 258 T ++GLYL VDYPD + + Sbjct: 241 PPTFMSDGLYLTGVDYPDEFGV 262 >UniRef50_B0TC90 Pseudouridylate synthase n=3 Tax=Clostridiales RepID=B0TC90_HELMI Length = 259 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 97/254 (38%), Positives = 144/254 (56%), Gaps = 4/254 (1%) Query: 10 YKIALGIEYDGSKYYGWQRQNE--VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 ++ L + YDG+ Y+G+Q Q + ++Q+ L +A+ + E + V CAGRTDAGVH G Sbjct: 4 RRLKLTVAYDGTCYHGFQTQENPALPTIQDALVRAIKVLTGEEVKVNCAGRTDAGVHARG 63 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QVV F T++ D + +NA LP D+AV KTVP FH+RF A + YRY IYNHR+ Sbjct: 64 QVVDFVTSSPIPDDRFPFAMNAILPPDVAVVAAKTVPLAFHSRFGALGKHYRYTIYNHRI 123 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + + PL E M AAQC +G +DF F A + R V ++TR Sbjct: 124 PSPFHRRYSHQVFPPLQFEAMAAAAQCFVGTHDFRGFCATGSPVKDFVRTVYRCDLTRQE 183 Query: 188 PY-VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 + +V+D+ N F+++M+R I G+L++VG I ++A++DRT A TA +GL Sbjct: 184 EHRLVLDVMGNGFLYNMIRIIAGTLIDVGKGKIALEEIPAIIASRDRTRAGMTAPPQGLC 243 Query: 247 LVAVDYPDRYDLPK 260 L+ V + D D P Sbjct: 244 LMKVWH-DPLDFPF 256 >UniRef50_A7C1F2 Pseudouridylate synthase n=1 Tax=Beggiatoa sp. PS RepID=A7C1F2_9GAMM Length = 272 Score = 310 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 121/250 (48%), Positives = 162/250 (64%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +IALG+EY+G+ ++GWQ Q RSVQ ++E ALS+VAN P+ V CAGRTD GVH GQV+ Sbjct: 2 RIALGVEYNGANFFGWQFQPHARSVQGEVEIALSKVANHPVKVICAGRTDTGVHAIGQVI 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 H + T R +W LG N+NLP D+++ W ++V ++FHARFSA AR YRYII N RPA Sbjct: 62 HADVTVQRSTRSWVLGTNSNLPIDVSMLWAQSVDNNFHARFSAQARHYRYIILNRPTRPA 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 +L+K VT L+ ERM A L+G +DF + +TP R + + V+R V Sbjct: 122 LLTKQVTWERRILEVERMQIAGNYLIGTHDFHLIVPFPVKQKTPIRTISRLMVSRMDDRV 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 ++DI ANAF+HHMVRNI G L+ +GA + W +L A+DRT+ TA A GLY + Sbjct: 182 IIDISANAFLHHMVRNIAGVLITIGAGEKRPKWADTVLEAQDRTMGGITAPAAGLYFCGI 241 Query: 251 DYPDRYDLPK 260 DYP Y PK Sbjct: 242 DYPASYQFPK 251 >UniRef50_B1XV49 tRNA pseudouridine synthase A n=97 Tax=Betaproteobacteria RepID=TRUA_POLNS Length = 276 Score = 310 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 114/269 (42%), Positives = 163/269 (60%), Gaps = 10/269 (3%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANE------PITVFCAGRTDAGVH 64 +IALG++YDGS Y GWQ Q +VQ +LEKA+S E PI AGRTD GVH Sbjct: 2 RIALGLQYDGSPYSGWQTQVNHNTVQNELEKAISAFVGEQACVVKPINTITAGRTDTGVH 61 Query: 65 GTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYN 124 GQVVHF+T R+D +W GVN+ L I + W K V ++F ARFSA R Y Y ++ Sbjct: 62 ALGQVVHFDTNVEREDFSWVRGVNSFLSSSIVINWAKPVSEEFCARFSAYEREYIYALHA 121 Query: 125 HRLRPAVLSKGVTHFYEP----LDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMH 180 R + + P D E M ++A+CL+GE+DF+SFR+ +CQS+TP + + Sbjct: 122 GPCRSPMAHSRAGYLMLPPSQWFDIEAMQKSAECLIGEHDFSSFRSSECQSKTPIKTIYL 181 Query: 181 INVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATA 240 I + P++ I+ NAF+HHM+RN+VG +++G Q W+AE+LAAK+R +AA T Sbjct: 182 IEIISKQPWLYFRIRGNAFLHHMIRNLVGCFLQIGQGKQTSQWMAEVLAAKNRQIAAPTF 241 Query: 241 KAEGLYLVAVDYPDRYDLPKPPMGPLFLA 269 A+GLYL + YP + +P+P + +L Sbjct: 242 MADGLYLAKITYPQEFAIPQPWLKSSWLP 270 >UniRef50_Q63H59 tRNA pseudouridine synthase A 1 n=102 Tax=Bacillales RepID=TRUA1_BACCZ Length = 247 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 78/243 (32%), Positives = 128/243 (52%), Gaps = 1/243 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQV-ANEPITVFCAGRTDAGVHGTGQV 69 +I + YDG + G+Q Q + R+VQ+++EKAL ++ E + V +GRTD+ VH GQV Sbjct: 3 RIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKGQV 62 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 +HF+T ++ W+ +N LP DI + V+ ++FHAR+ + YRY + + Sbjct: 63 IHFDTPLSLEEWQWSNALNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLVSKTAD 122 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 V + PL+ + +A +G +DFTSF + + + R + I + Sbjct: 123 VFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIEQDDE 182 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 ++ N F+++MVR IVG+L+ VG I E+LA ++R A A GLYL Sbjct: 183 LIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYLWQ 242 Query: 250 VDY 252 V+Y Sbjct: 243 VNY 245 >UniRef50_A5N4T0 tRNA pseudouridine synthase A n=25 Tax=Clostridium RepID=TRUA_CLOK5 Length = 244 Score = 309 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 81/244 (33%), Positives = 130/244 (53%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I L IEYDG+ Y GWQRQ ++Q++LE+A+ + E V + RTDAGVH G Sbjct: 1 MKNIKLVIEYDGTNYSGWQRQYNAITIQQRLEEAIEKATGEFSPVIGSSRTDAGVHARGF 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V +F T + + + +N LP DIAV K V FH+R+ T + Y Y I Sbjct: 61 VCNFFTASKIPTSNIKMVLNTLLPEDIAVLDSKEVDSSFHSRYFTTGKEYSYTIVTGDRP 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 P + + V +F LD E++ + + +G +DF++F+ +R+ R + + V + Sbjct: 121 PVIGRQYVYYFRRKLDIEKIKNSCEYFIGTHDFSAFKKKGSTARSSIRTIKELTVLKEKN 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + +I + F+++MVR I+G+L+EVG ++ +L +KDR A A+GL L Sbjct: 181 IIKFNIVGDGFLYNMVRIIIGTLLEVGLGRFSIEYVKYILESKDRAKAGKPVPAKGLCLE 240 Query: 249 AVDY 252 V Y Sbjct: 241 KVFY 244 >UniRef50_Q5WLN0 tRNA pseudouridine synthase A n=15 Tax=Bacillales RepID=TRUA_BACSK Length = 261 Score = 309 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 131/245 (53%), Gaps = 1/245 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQV-ANEPITVFCAGRTDAGVHGTG 67 + ++A + YDG+ + G+Q Q R+VQ ++E+AL ++ + V +GRTDAGVH G Sbjct: 1 MSRMACKLSYDGTAFAGYQVQPGKRTVQSEVERALQEIHKGARVPVVASGRTDAGVHACG 60 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QV+HF+T W +N +LP DI V V DFHAR+ A A+ YRY I Sbjct: 61 QVLHFDTELTIAPERWVSALNTHLPDDIVVTNAAMVEPDFHARYGAQAKEYRYYIQCGPF 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 H + LD M AA+ LLG +DF++F A R + H+ V Sbjct: 121 ENVFRRHFAVHIKQALDVPAMQTAAKHLLGTHDFSAFCAANTTVTDKVRTITHVAVQPSE 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 +++ I+ F+++MVR IVG+L+E+G + S + +LA K R LA TA A GL L Sbjct: 181 EGLLISIRGTGFLYNMVRIIVGTLLEIGTGKRVASEMKVILAGKSRNLAGKTAPAHGLCL 240 Query: 248 VAVDY 252 VDY Sbjct: 241 YEVDY 245 >UniRef50_A7VWN0 Pseudouridylate synthase n=2 Tax=Clostridium RepID=A7VWN0_9CLOT Length = 251 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 91/248 (36%), Positives = 136/248 (54%), Gaps = 1/248 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + L I YDG Y+GWQ Q SVQE + AL QV + V RTD+GVH Sbjct: 3 KRNLLLTIAYDGRAYHGWQIQENALSVQEVFQGALRQVIGDDFDVKGCSRTDSGVHANQY 62 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 + +T +N LP D+AV+ ++V DFHAR+S + Y+Y+I+N +R Sbjct: 63 CISLKTGHRIPCERLVAALNRFLPMDMAVKGCRSVSLDFHARYSCKGKEYQYLIWNDPVR 122 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPW-RNVMHINVTRHG 187 L H++ PLD + +++AAQ +G++DFTSF + + R R V +V+R G Sbjct: 123 NPFLDGRAFHYWYPLDTDMLNQAAQAFVGKHDFTSFCTLDHRERDNMERMVKCCSVSREG 182 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 V ++A+ F+++MVR +VG+L+ + PE I +L AKDR+ A TA+A GLYL Sbjct: 183 SLVTFRVEADGFLYNMVRIMVGTLLRIAQGKIPEDGIPAILEAKDRSKAGPTARACGLYL 242 Query: 248 VAVDYPDR 255 V Y + Sbjct: 243 NRVFYEED 250 >UniRef50_D0LWH9 Pseudouridylate synthase n=2 Tax=Deltaproteobacteria RepID=D0LWH9_HALO1 Length = 264 Score = 308 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 103/260 (39%), Positives = 140/260 (53%), Gaps = 5/260 (1%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 I L +EYDG+ GWQRQN +VQ +E ALS + + + A RTDAGVH GQV Sbjct: 5 RTIRLVLEYDGTGLSGWQRQNNAPTVQAHVEDALSSMLGRAVQIVGASRTDAGVHALGQV 64 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 HF T + + G+N LP IAV V DFHARF + + YRY ++ R Sbjct: 65 AHFRTGSSIPPHGFLRGLNGKLPPAIAVVACAEVRADFHARFDSRGKHYRYALHTRAARA 124 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR-HGP 188 +L + H PLD M RAAQ +LGE DF +FRA C ++T R V + ++R Sbjct: 125 PLLRERAWHCPRPLDLAAMERAAQAMLGERDFQAFRASGCTAKTSRRRVDRVALSRPAAD 184 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + +D+ NAF+ +MVR + G+L++VG I+ +L ++DRT A TA A GL LV Sbjct: 185 LIHIDVYGNAFLRNMVRIMAGTLVDVGLGRLAADEISSILDSRDRTCAGRTAPAHGLTLV 244 Query: 249 AVDYPDR----YDLPKPPMG 264 V YP +P P G Sbjct: 245 EVFYPAETPSTTTVPPSPQG 264 >UniRef50_C0X1G0 Pseudouridylate synthase n=36 Tax=Enterococcus RepID=C0X1G0_ENTFA Length = 277 Score = 307 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 98/246 (39%), Positives = 143/246 (58%), Gaps = 1/246 (0%) Query: 8 PVYKIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGT 66 P+ I L IEYDG +Y GWQR +++Q K+E L+Q+ EPI + +GRTDAG H Sbjct: 31 PMRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHAR 90 Query: 67 GQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 GQV +F+TT+ +N LPGDI V+ V +P+ FHAR++AT ++Y Y ++N Sbjct: 91 GQVANFKTTSSLTTTEMLSFLNRYLPGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSP 150 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 + A HF + LD E+M +A Q L+G +DF F A++ ++ R + I + R Sbjct: 151 IPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIERD 210 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G + N F+H MVR +VG+L+E+GA + + I EL A K R A TA A+GL+ Sbjct: 211 GEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGLF 270 Query: 247 LVAVDY 252 L V Y Sbjct: 271 LDEVYY 276 >UniRef50_Q1Q1P7 Pseudouridylate synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1P7_9BACT Length = 244 Score = 307 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 92/244 (37%), Positives = 137/244 (56%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + L IEY+G+ Y GWQ Q SVQE L A+ V E + + AGRTDAGVH GQ Sbjct: 1 MRNVRLTIEYEGTNYAGWQWQKNAISVQETLTHAVRTVIREEVEIHGAGRTDAGVHALGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V +F+T + +N +LP DI ++ V + + FHAR+SAT++ YRY + N LR Sbjct: 61 VANFKTYSAIPAKQLLRAINFHLPQDITIKDVADMEEGFHARYSATSKVYRYTVLNDWLR 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 ++ + PLD +M AAQ L+G +DFTSF ++ R + ++ + + G Sbjct: 121 TSLNRNFCYVYGFPLDLSKMMTAAQYLIGTHDFTSFTTKALDNKDRIRTIKNLEIQKEGK 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Y+ ++AN F++ MVR IVG+L+E+G I +LL +R A TA A+GL + Sbjct: 181 YIYFVVEANGFLYKMVRTIVGTLLEIGRGKMDVYLIRKLLETGNRDDAGPTAPAKGLCMK 240 Query: 249 AVDY 252 V Y Sbjct: 241 EVKY 244 >UniRef50_A7VFR5 Pseudouridylate synthase n=7 Tax=Clostridiales RepID=A7VFR5_9CLOT Length = 273 Score = 306 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 90/249 (36%), Positives = 135/249 (54%), Gaps = 2/249 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I YDG++Y+GW+ + +V ++Q K+E LS +A E + + AGRTDAGVH Sbjct: 25 MQNYRFLIAYDGTRYHGWEHKKDVVTIQGKIESVLSLMAGEEVRINGAGRTDAGVHARAM 84 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V + +N LP DI + V + FHARF+A + YRY IY RL+ Sbjct: 85 VASGPVPTDKTPEEIRDYMNHYLPDDICILEVTPAAERFHARFNAKGKHYRYTIYRGRLK 144 Query: 129 PAVLSKGVTHFY--EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 P K V E +D ERM +AA L+GE+DF SF + ++ R + I++ Sbjct: 145 PVFDRKYVWTLDEGETIDCERMRKAAAYLVGEHDFKSFCGNKQMKKSTVRKLFAIDIKED 204 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G YV++D F+ +MVR + G+L+EVGA +++ E+L + R LA TA +GL Sbjct: 205 GDYVILDFYGAGFLQNMVRILTGTLVEVGAGRMEPAYMEEVLTGRCRQLAGPTAPPQGLC 264 Query: 247 LVAVDYPDR 255 L+ VDY + Sbjct: 265 LMQVDYEKK 273 >UniRef50_UPI0000E87E98 tRNA pseudouridine synthase A n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87E98 Length = 264 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 93/250 (37%), Positives = 147/250 (58%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +IA + Y+G + GWQ+Q +V+++Q +E AL+++A + + +GRTD+GVH GQ++ Sbjct: 2 RIACSVSYNGYGFSGWQKQPDVKTIQGLIESALTEIAKDTVITHASGRTDSGVHALGQII 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+TT R AW GVNA LP I VRW K + + FHAR S R Y+Y++ A Sbjct: 62 HFDTTKNRPLTAWVKGVNAFLPSSIKVRWAKNISESFHARHSVLEREYQYLLIKDTNNSA 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + Y LD + A +C G +DF+SFR+ +CQ+++P R + + G Sbjct: 122 IFHATAGWTYFDLDDYNLMAACKCFEGTHDFSSFRSSECQAKSPVRTINQFRCEQFGNTY 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + I+AN F+HH +RN++ +++ V + +I +LL+ KDRTLA T GLYL + Sbjct: 182 LFTIRANGFLHHQIRNMIAAVIHVAKNEDSVGFIDDLLSKKDRTLAPPTFMPNGLYLSNI 241 Query: 251 DYPDRYDLPK 260 Y D++ LP+ Sbjct: 242 KYDDKWKLPQ 251 >UniRef50_C5T803 Pseudouridylate synthase n=2 Tax=Comamonadaceae RepID=C5T803_ACIDE Length = 289 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 122/282 (43%), Positives = 169/282 (59%), Gaps = 14/282 (4%) Query: 2 SDQQQPP--VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRT 59 + Q P ++ALG+ Y+G +Y GWQ Q +VQ+ LE AL + + ++ CAGRT Sbjct: 8 ASQAAHPGLPTRVALGVSYNGQRYNGWQSQPSGNTVQDHLEAALGRFTTQQVSTLCAGRT 67 Query: 60 DAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYR 119 DAGVHG QVVHF+TT +R DA+W G NA LP DIAV+W + VP FHAR SA ARRY Sbjct: 68 DAGVHGLMQVVHFDTTLVRPDASWVRGTNAFLPQDIAVQWARAVPSGFHARASAVARRYA 127 Query: 120 YIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVM 179 Y++ +RP+V + V + L+ + M +AA LLGE+DFTSFRA CQ+++P + + Sbjct: 128 YVLLQSPVRPSVEAGRVGWVFNALNEDAMRQAALRLLGEHDFTSFRASACQAKSPVKTLQ 187 Query: 180 HINVTR------------HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAEL 227 I++TR Y + +ANAF+HHM+RNI+GSL+ VG +P SWI+E+ Sbjct: 188 RIDITRTPCPRASAAGEFDACYWRFEFEANAFLHHMIRNIMGSLVAVGKGTKPPSWISEV 247 Query: 228 LAAKDRTLAAATAKAEGLYLVAVDYPDRYDLPKPPMGPLFLA 269 L A R AA T +GLY Y ++ LP +L Sbjct: 248 LDAHSRDAAAPTFSPDGLYFQGPVYAPQWGLPGRTAAYDWLP 289 >UniRef50_A8ZTL2 Pseudouridylate synthase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZTL2_DESOH Length = 252 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 93/250 (37%), Positives = 135/250 (54%), Gaps = 1/250 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 L IEYDG+ ++GWQ Q ++R+VQ ++ AL+ + + ++V +GRTDAGVH Q Sbjct: 2 KKNFRLIIEYDGACFHGWQIQKDLRTVQGEITGALASITGQAVSVIGSGRTDAGVHAMAQ 61 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V F + +N L DI + + V +FHAR+SA ++ YRY I N L Sbjct: 62 VASFICDTRLEPGTLQKALNGILAKDIVIHDCREVSLNFHARYSAKSKTYRYRILNRNLP 121 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT-RHG 187 A+ H +PLD M A +LG +DF+SF + R+V Sbjct: 122 AALYRGYAWHIKKPLDLGAMTAALPHILGRHDFSSFEGTGSPKASSVRHVTAATFNMAED 181 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 Y+ +I A+ F+ HMVRNIVG+L+EVG + +A++LAAKDR+ A ATA GL+L Sbjct: 182 GYLAFEITADGFLKHMVRNIVGTLVEVGLGKKTPEAVADILAAKDRSRAGATAPGHGLFL 241 Query: 248 VAVDYPDRYD 257 V V+Y D Sbjct: 242 VRVNYEPSPD 251 >UniRef50_UPI0001C35668 tRNA pseudouridine synthase A n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35668 Length = 404 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 86/252 (34%), Positives = 128/252 (50%), Gaps = 1/252 (0%) Query: 5 QQPPVYKIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTDAGV 63 + + ++YDGS+Y GWQ+Q ++Q KLE L ++ P+ V +GRTDAGV Sbjct: 152 AKKRDKNYKIVLQYDGSRYDGWQKQGNTGNTIQGKLEGILLKLTGRPVEVHGSGRTDAGV 211 Query: 64 HGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIY 123 H Q +F + N LP DIAV V+ V D FH+R +A + Y Y I Sbjct: 212 HALAQTANFHADTGMTEDQIRAYFNQYLPEDIAVLSVEKVQDKFHSRLNAVQKTYLYRIE 271 Query: 124 NHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV 183 + K + L A+RM AA C+LGE+DF SF + ++ R + I + Sbjct: 272 MGPKKDVFERKYCYGLGKQLSADRMKEAAACVLGEHDFKSFCGNKKMKKSTVRTISDITI 331 Query: 184 TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 + G +++ N F++HMVR + G+L+E+G + + E+L DR A TA E Sbjct: 332 EKEGTKLLIRYTGNGFLYHMVRILTGTLIEIGLEERSPQEMKEILLKLDRQAAGFTAPPE 391 Query: 244 GLYLVAVDYPDR 255 GL+L V Y DR Sbjct: 392 GLFLERVMYEDR 403 >UniRef50_UPI00016C512A tRNA pseudouridine synthase A n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C512A Length = 263 Score = 305 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 103/255 (40%), Positives = 151/255 (59%), Gaps = 2/255 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEP-ITVFCAGRTDAGVHGTG 67 + + L I YDG+ ++GWQ Q R+VQE +EKA++++ EP + + C+GRTD+GVH G Sbjct: 1 MRNLKLIIRYDGTDFFGWQTQPGRRTVQETVEKAIAEITREPRVRLNCSGRTDSGVHAVG 60 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QV + T + A +NA LP D+ VR V P F A A + YRY++ + RL Sbjct: 61 QVANVYTASKLSCAVLLKAINAKLPEDVGVREVTEAPQSFCANKDAVRKMYRYVVQDGRL 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + L K + L+AE M RA++CL+G +DF F T R + H++V R G Sbjct: 121 QDPFLRKYAWFVRQHLNAEAMARASRCLVGRHDFRCFETEWPNRLTSVRTITHLSVNRFG 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + +D++AN F+++MVR I GSL++VG PE+ IA++L A DR LA TA EGL+L Sbjct: 181 ECIWIDVEANGFLYNMVRAIAGSLVQVGRGFWPETQIADVLHAMDRRLAGPTAPPEGLFL 240 Query: 248 VAVDYPDRY-DLPKP 261 + V YP+ D P P Sbjct: 241 MRVTYPESGADRPAP 255 >UniRef50_C6PXV6 Pseudouridylate synthase n=2 Tax=Clostridium RepID=C6PXV6_9CLOT Length = 249 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 137/249 (55%), Gaps = 5/249 (2%) Query: 9 VYKIALGIEYDGSKYYGWQRQNE-----VRSVQEKLEKALSQVANEPITVFCAGRTDAGV 63 + + + I+YDGS+Y GWQ+QN V ++Q+K+E LS++ E I V GRTD GV Sbjct: 1 MRNLKMLIQYDGSRYKGWQKQNHKDNNSVSTIQDKIESVLSKMTGEDIQVVGCGRTDTGV 60 Query: 64 HGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIY 123 H V +F T ++ + LP DI V+ ++ + FHAR++A ++ Y Y I Sbjct: 61 HAENYVANFHTDSILTVEDMLKYLYEFLPEDIVVKSLRDTSERFHARYNAKSKTYLYTIN 120 Query: 124 NHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV 183 N++ R K H E L+ M AA+ L G +DF SF +++ +++ R + +I++ Sbjct: 121 NNKFRNVFNRKYAYHVEENLNLSEMRDAAEVLTGTHDFQSFTSLKSNTKSTVRTINYISI 180 Query: 184 TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 T + +++ N+F+ +MVR IVG+L++VG S + ++L K R A A A+ Sbjct: 181 TEEHGMIGIEVNGNSFLLNMVRIIVGTLLDVGKGILKPSDVEKILYEKKRAEAGPMAAAK 240 Query: 244 GLYLVAVDY 252 GL L + Y Sbjct: 241 GLCLKDIQY 249 >UniRef50_D2R418 tRNA pseudouridine synthase A n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R418_9PLAN Length = 285 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 96/249 (38%), Positives = 140/249 (56%), Gaps = 4/249 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + L + YDG+ + GWQ Q R+VQ++LEKA+ + +GRTDAGVH GQ Sbjct: 1 MRTFKLTLAYDGTNFGGWQWQPNRRTVQDELEKAVETITGVRSRFVASGRTDAGVHALGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V F + A G+NA +P DI + V VP FH A +RYRY++ + LR Sbjct: 61 VAAFSSETGIDPAGLLKGLNAKVPDDIFIFDVVEVPLAFHPIRDAVRKRYRYVVQDGPLR 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + H +PLD + M A++ LLGE+DF SF+ T RNV+ I+V R Sbjct: 121 DIFDRQYAWHVRQPLDEQAMLEASRLLLGEHDFASFQTSGSSRLTTERNVLDISVERVDG 180 Query: 189 ----YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 V V+++A+ F+ +MVRNIVG+L+EVG +P +W E+L ++DR A TA A+G Sbjct: 181 ARTSRVHVEVEADGFLFNMVRNIVGTLVEVGKGTRPVAWTREVLESRDRRRAGMTAPAQG 240 Query: 245 LYLVAVDYP 253 L+++ V Y Sbjct: 241 LFMIGVHYD 249 >UniRef50_A6NVS7 Pseudouridylate synthase n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NVS7_9BACE Length = 249 Score = 304 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 129/247 (52%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + IAL + Y G+ Y+GWQ Q +V+E LEKA++ V P+ AGRTDAGVH Sbjct: 1 MRNIALKLMYVGTAYHGWQIQKNAVTVEETLEKAIASVVGHPVKCTGAGRTDAGVHAENY 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 + +F TT+ L VN LP DI V V D F+A S + Y Y IYN R+R Sbjct: 61 IANFRTTSTIPCDRLPLAVNTRLPEDIVVVKATEVHDGFNAIGSCIKKEYTYRIYNSRIR 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 A + + LD + M AA +G +DF + ++V + ++ R V + N+TR G Sbjct: 121 NAFFVNRAWFYPKHLDEKVMQAAADRFVGTHDFAAVQSVGTEVQSTVRTVHYFNMTRSGD 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + + AN F+++MVR +VG+ + P ++++L + RT A TA GLY+ Sbjct: 181 MIECRVCANGFLYNMVRAMVGTCVYAAEGKFPPEAVSDILEGRCRTAAGPTAPPGGLYMT 240 Query: 249 AVDYPDR 255 + Y + Sbjct: 241 KLWYEED 247 >UniRef50_B0MNN1 Pseudouridylate synthase n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MNN1_9FIRM Length = 250 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 131/249 (52%), Gaps = 2/249 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + + + Y+G+ Y+G+QRQN S+Q+ +E+ LS++ E IT+ RTD GVH Sbjct: 1 MRNLKVTMAYNGTAYHGYQRQNNANSIQQTVEEVLSKLLCEDITINGCSRTDTGVHARAF 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V + +T + G NA LP DIA + +PD FHARF + + Y Y IY +R Sbjct: 61 VFNVKTNCPIPCEGFIKGGNALLPQDIAFLSCEDMPDSFHARFDSKGKEYIYKIYTGDVR 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSR--TPWRNVMHINVTRH 186 + H+ D E+M +AA+ ++GE+DF SF + + T R V I+V + Sbjct: 121 DVFSADTALHYPYKPDIEKMRKAARLIVGEHDFASFCKAEAKEHLLTTVRTVYSIDVEQT 180 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G +V + + N F+H+MVR IVG+L+ + + E I L DR A T GLY Sbjct: 181 GDFVEIKVCGNGFLHNMVRIIVGTLIYISEGKRTEQDIINALTKPDREFAGKTVPPCGLY 240 Query: 247 LVAVDYPDR 255 L V Y + Sbjct: 241 LNKVFYEND 249 >UniRef50_A8W1A9 Pseudouridylate synthase n=2 Tax=Bacillus RepID=A8W1A9_9BACI Length = 261 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 127/245 (51%), Gaps = 1/245 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN-EPITVFCAGRTDAGVHGTG 67 + ++ + IEYDGS + G+Q+Q R+VQ +LE+ALS + E +GRTD GVHG Sbjct: 1 MRRMLIRIEYDGSGFNGYQKQPNARTVQGELERALSVMHKAESWPCTSSGRTDTGVHGVR 60 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 Q VHF++ D W + +N+ LP DI V V FHAR+ + YRY + + Sbjct: 61 QPVHFDSPLTIPDERWPMALNSLLPDDIQVLGAMEVDASFHARYDTVGKVYRYRVDTAKR 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + HF +D E M AA+ L G +DFTS + + + R + +++ Sbjct: 121 QTVFRRSFAAHFPGNMDIEAMREAAKHLEGTHDFTSLSSPKTDVKDKVRTLFAVSLEERE 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 V + F++ MVR ++G+L++VG+ + P I ++ ++R A TA GLYL Sbjct: 181 DGFDVVFAGSGFLYQMVRILMGTLIKVGSGDWPPDVIPAIIEKQERQAAGPTAPGHGLYL 240 Query: 248 VAVDY 252 V Y Sbjct: 241 EDVFY 245 >UniRef50_C8WTU3 Pseudouridylate synthase n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WTU3_ALIAD Length = 262 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 129/247 (52%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 +I L + YDGS ++G+ RQ +R+VQ LE L ++ I V +GRTD GVH QV Sbjct: 5 RRIRLVLGYDGSGFHGFARQEGLRTVQGVLEDELRRMLGVDILVEGSGRTDRGVHARAQV 64 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 VHF+ + LP D+ R V + FHARFS + YRY + L Sbjct: 65 VHFDLPYGPPADRMVHVLRRRLPADLLPRDAGEVDEGFHARFSVVRKTYRYTLDLAPLPS 124 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 + H EPLD M AA+ LLGE+DFTSF A + + R R + + + G Sbjct: 125 LYWYRFSWHHPEPLDLAAMQEAARHLLGEHDFTSFCAAEARQRDKVRRIDRVEFRQDGSR 184 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 + ++ + N F+ +MVR +VG+L++VG + I +L A+DR LA TA GL L Sbjct: 185 LHIEFEGNGFLQYMVRILVGTLVKVGRGQERPDRIPLILEARDRRLAGETAPPHGLCLWN 244 Query: 250 VDYPDRY 256 V+YP Y Sbjct: 245 VEYPPEY 251 >UniRef50_B7K222 tRNA pseudouridine synthase A n=12 Tax=Cyanobacteria RepID=TRUA_CYAP8 Length = 293 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 100/276 (36%), Positives = 145/276 (52%), Gaps = 9/276 (3%) Query: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60 M Q ++AL I+Y GS+++GWQ Q R+VQ ++E A+++V E +T+ AGRTD Sbjct: 1 MKGTQTKEKQRVALVIQYLGSRFHGWQWQPNQRTVQAEIENAIAEVLGETVTLHGAGRTD 60 Query: 61 AGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRY 120 AGVH QV HF+ + + W +NA LP DI +R VP +HARFSA RRYRY Sbjct: 61 AGVHAAAQVAHFDMVSPIPASRWVDILNARLPEDILIRGSAQVPLTWHARFSAQWRRYRY 120 Query: 121 IIYNHRLRPAVLSKGVTHFYE-PLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVM 179 Y + + H+Y PLD M +A LLG + +F + W V Sbjct: 121 TFYTEQRPNLFVKPYSWHYYHFPLDESLMQQALNPLLGRHHLAAFHRAGSRRDHSWVEVQ 180 Query: 180 HINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAAT 239 + R GP++ ++I+AN F++ MVR +VG L+EVG+ + E+ + R Sbjct: 181 STHCHRQGPFIHLEIQANGFLYGMVRLLVGLLVEVGSGKRSLENFTEIWRKQQREAVKYA 240 Query: 240 AKAEGLYLVAVDYPDRYDLPKPP-----MGPLFLAD 270 A A+GL L+ V Y + P PP PLFL + Sbjct: 241 APAKGLCLLRVGYEE---FPFPPSLWFDSQPLFLFN 273 >UniRef50_Q7TU07 tRNA pseudouridine synthase A n=1 Tax=Rhodopirellula baltica RepID=TRUA_RHOBA Length = 276 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 88/275 (32%), Positives = 142/275 (51%), Gaps = 15/275 (5%) Query: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60 M +P + L + YDG++Y GWQ Q E RS+Q +LE+ + +A P+ V +GRTD Sbjct: 1 MQANDRPRTFH--LTVAYDGTEYCGWQVQPEQRSIQSELERVIRPLAGRPVRVLGSGRTD 58 Query: 61 AGVHGTGQVVHFETTALRKDA-AWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYR 119 AGVH GQV + D A +N+ LP DI V+ V+ + FH AT ++Y+ Sbjct: 59 AGVHAIGQVARCVLPVWKADTVALQRAINSKLPNDIRVKAVRETRERFHPIADATGKQYQ 118 Query: 120 YIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVM 179 Y++ R ++ V P+D M AA +G +DF +F+ + + R + Sbjct: 119 YLVQVGGSRDPFANRFVNRVGGPIDHSAMQSAAAKFVGRHDFKAFQGTGAERPSTVRTIH 178 Query: 180 HINVTR-----------HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELL 228 G + +I F+++MVRN++G+++EVG + +WI E+L Sbjct: 179 SARWIPRVATGPTGAELEGEHWCFEIDGEGFLYNMVRNLMGTMLEVGRGKKSPNWIDEVL 238 Query: 229 AAKDRTLAAATAKAEGLYLVAVDYPDR-YDLPKPP 262 A++DR +A TA +GL+L VDYPD + + +P Sbjct: 239 ASRDRKMAGPTAPPQGLFLCRVDYPDEVFQVEEPD 273 >UniRef50_C4V5N7 Pseudouridylate synthase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V5N7_9FIRM Length = 256 Score = 301 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 101/247 (40%), Positives = 131/247 (53%), Gaps = 1/247 (0%) Query: 10 YKIALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 IAL I YDG+ Y+G+QRQ V +VQ LE AL+++ E + + AGRTDAGVH GQ Sbjct: 7 RNIALTIAYDGTNYHGFQRQTPPVLAVQNVLEGALAKICGEMVELAAAGRTDAGVHAYGQ 66 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 VV+F T VN LP DI V P +F AR SAT + Y Y I R+ Sbjct: 67 VVNFFTDGRIPTEHLPRAVNGLLPPDIVVSQAWEAPREFSARHSATGKAYVYRIEECRVP 126 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 ++PLD E MH L G +D++SFRA +P R + I +T Sbjct: 127 NPFTRNYAWQVFQPLDHEAMHAVLLLLKGTHDYSSFRAAGGAPMSPVRTLDEIRLTEEEG 186 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + + + F++HMVRNIV + VG S AE+ AA+DR LA TA A GLYL+ Sbjct: 187 RLSIYVHGTGFLYHMVRNIVSTAAAVGMGRISPSRFAEIFAARDRRLAPPTAPACGLYLL 246 Query: 249 AVDYPDR 255 AVDY R Sbjct: 247 AVDYGQR 253 >UniRef50_B3E0A0 tRNA pseudouridine synthase A n=1 Tax=Methylacidiphilum infernorum V4 RepID=TRUA_METI4 Length = 255 Score = 301 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 133/247 (53%), Gaps = 1/247 (0%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 L + Y GS ++GWQRQ E+ +VQ LE+A++++ EPI V AGRTDAGVH GQV Sbjct: 8 YKLTLSYCGSGFHGWQRQGELPTVQRALEEAVAKIWEEPIPVEGAGRTDAGVHAKGQVAS 67 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 F + +N +LP + V + VP +F ARF A ++ Y+Y+++N + Sbjct: 68 FAAPRKLEPEVLKRALNYHLPDTVRVWDARIVPREFSARFDAVSKTYQYLLWNDPVMDPF 127 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSF-RAVQCQSRTPWRNVMHINVTRHGPYV 190 H +D E M+ AA+ LG+++F +F + P R V+ G V Sbjct: 128 YLGRAWHIPRAMDVEMMNEAARLFLGKHNFAAFVSNPGMPVKNPVRTVLDCFFLEQGSLV 187 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 ++KA+ F++ MVRN+VG+L++VG + ++ + R A A A GLYL+AV Sbjct: 188 FFNVKADGFLYRMVRNMVGALVKVGLGRLSRQELKKIFENQKRIEAFAAAPPWGLYLLAV 247 Query: 251 DYPDRYD 257 DYP + Sbjct: 248 DYPPDQE 254 >UniRef50_UPI0001973C8C tRNA pseudouridine synthase A n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973C8C Length = 275 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 88/267 (32%), Positives = 136/267 (50%), Gaps = 21/267 (7%) Query: 10 YKIALGIEYDGSKYYGWQRQNEV-RSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 I + ++YDGS+Y GWQ+Q ++Q KLE L ++A EP+ + +GRTDAGVH GQ Sbjct: 3 RNIKIVLQYDGSRYDGWQKQGNTKNTIQGKLEAVLEKLAGEPVEIHGSGRTDAGVHALGQ 62 Query: 69 VVHFETTALRKDA--------------------AWTLGVNANLPGDIAVRWVKTVPDDFH 108 V +F + A +N LP DIAV VP+ FH Sbjct: 63 VANFRLEERCLEELVDKTPEKKENGGKASSVSAAVMDYLNRYLPEDIAVISAMEVPERFH 122 Query: 109 ARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQ 168 +R +A + Y Y I + K + E LD M AA+ LLG +DF +F + + Sbjct: 123 SRLNAVEKTYLYQIETAGRKNVFERKYIYGLGEELDLLAMKEAAKLLLGSHDFRAFSSAK 182 Query: 169 CQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELL 228 ++ R + I + R G V+++ N F+++MVR + G+L+E+G H + + + L Sbjct: 183 RMKKSTVRELRKIEIHRDGSRVLLEFTGNGFLYNMVRILTGTLIEIGLHRRTVDSVRKAL 242 Query: 229 AAKDRTLAAATAKAEGLYLVAVDYPDR 255 ++DR A TA AEGL L +V Y ++ Sbjct: 243 ESQDRENAGFTAPAEGLLLKSVRYDEK 269 >UniRef50_UPI0001BCC844 tRNA pseudouridine synthase A n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCC844 Length = 267 Score = 300 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 96/253 (37%), Positives = 132/253 (52%), Gaps = 2/253 (0%) Query: 3 DQQQPPVYKIALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVANEPITVFCAGRTDA 61 + + +AL I YDG++Y+G+QRQ V +VQ LE AL++V E + + AGRTDA Sbjct: 7 EMMKRRARNLALKIAYDGTRYHGFQRQSPPVVAVQNALEAALAEVCGETVELAAAGRTDA 66 Query: 62 GVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYI 121 GVH GQVV+F T VN LP DIAV DF AR SA + Y Y Sbjct: 67 GVHACGQVVNFFTDGRIPTERLPRAVNGLLPPDIAVTDAWEAARDFSARHSAKGKAYVYR 126 Query: 122 IYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHI 181 + + + PLD E M A L+G +D++SFRA +P R + I Sbjct: 127 MEQCTVPNPFTRNYAWQIFRPLDVEAMRAALAMLVGTHDYSSFRAAGGAPMSPVRTIDEI 186 Query: 182 NVTRHGP-YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATA 240 + G + + N F++HMVRNI+ +++ VG AE+ AA+DR LA+ TA Sbjct: 187 RLEDEGEGRLSCYLHGNGFLYHMVRNIMSTVVSVGQERISVGRFAEIFAARDRRLASPTA 246 Query: 241 KAEGLYLVAVDYP 253 A GLYL+ VDY Sbjct: 247 PACGLYLLHVDYD 259 >UniRef50_C1SLX8 Pseudouridylate synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SLX8_9BACT Length = 245 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 137/244 (56%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 +Y L +EY G+ + GWQ Q R+VQE+L KALS++ +TV +GRTD+GVH GQ Sbjct: 2 LYNKKLIVEYVGTDFAGWQVQPNGRTVQEELHKALSKMYKTKVTVIGSGRTDSGVHALGQ 61 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V +F T +G+N+ LP DI++ V+ VP+DFHA+ +A ++ Y Y I+ R+R Sbjct: 62 VANFRTERYIPPENVHMGLNSMLPEDISISSVEDVPEDFHAQLNAVSKTYLYRIFPSRVR 121 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 A+L+ + L+ +RM + GE+DFTSF R + +I R Sbjct: 122 SAMLAGRTWWVKDELNYKRMCELLKYFEGEHDFTSFCVQTSLRENNVRRINNIRCYREDK 181 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + ++I N F+H+MVR I G+++E + +I E + +DR+ A TA A GLYL Sbjct: 182 VICIEINGNGFLHNMVRIIAGTVVEALRKGYGDEYIKEAIEGRDRSKAGPTAHAAGLYLK 241 Query: 249 AVDY 252 V Y Sbjct: 242 KVYY 245 >UniRef50_Q8D2P5 tRNA pseudouridine synthase A n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=TRUA_WIGBR Length = 264 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 108/252 (42%), Positives = 168/252 (66%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + K+A GI Y G+ Y GWQ Q + S+QE +E AL + + E I ++CAGRTDA VH Q Sbjct: 1 MKKLAAGISYQGNNYCGWQSQKNIISIQEYVELALFKFSGEKIKIYCAGRTDAKVHALLQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 VVHF T R W LGVN+ LP DI++ WV V ++FHAR+SA A++Y Y+I+N+ R Sbjct: 61 VVHFYTDIKRSYRQWILGVNSYLPYDISIMWVIKVHNNFHARYSAIAKKYLYLIHNNISR 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + K + + L+ M +AAQ L+G++DF+SF+ +CQS+T +R + +I + ++ Sbjct: 121 SGIFRKYCFNVFISLNINDMKKAAQKLIGKHDFSSFKGSECQSKTTYRVIYYIRINKYKE 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Y+ V+IKAN+F++HM+RNI+G+L+E+G + + W++ELL K+ + +A +GLYL Sbjct: 181 YIFVEIKANSFLNHMMRNIIGNLIEIGKGKKSKEWMSELLFLKNNKFSIFSADPKGLYLS 240 Query: 249 AVDYPDRYDLPK 260 V YP +++PK Sbjct: 241 NVYYPFYFNIPK 252 >UniRef50_Q6ANM1 tRNA pseudouridine synthase A 1 n=1 Tax=Desulfotalea psychrophila RepID=TRUA1_DESPS Length = 251 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 84/251 (33%), Positives = 129/251 (51%), Gaps = 7/251 (2%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I L I +DG+ Y GWQ+Q+ ++Q ++E L +++ + I++ AGRTDAGVH G Sbjct: 1 MRNICLLIAFDGTDYSGWQKQHHANTIQGEIEARLKRLSVKEISLHGAGRTDAGVHADGM 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 HF T + +N LPG I + V+ + DDFHARF+AT + Y Y ++ + Sbjct: 61 TAHFHTDTRLTCNDFQRALNRMLPGAIRILQVREMADDFHARFAATGKEYHYRLFTGGVI 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRT------PWRNVMHIN 182 P + H +P+D E M + Q ++G +DF+SF + +T R ++ Sbjct: 121 PPQKRLYMLHQEKPIDQEAMQKCLQIIIGTHDFSSFENTGSRDKTRTGGKGAVRTILEAR 180 Query: 183 VTR-HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAK 241 + + F+ +MVRNIVGS++EVG + W + L KDR A TA Sbjct: 181 YEQFEEDSWHFVFIGDGFLRNMVRNIVGSILEVGRGKESVEWFEQALKEKDRNAAGPTAP 240 Query: 242 AEGLYLVAVDY 252 A GL L V Y Sbjct: 241 AHGLKLFQVFY 251 >UniRef50_C9KPE0 Pseudouridylate synthase n=2 Tax=Veillonellaceae RepID=C9KPE0_9FIRM Length = 264 Score = 299 bits (767), Expect = 6e-80, Method: Composition-based stats. Identities = 91/255 (35%), Positives = 132/255 (51%), Gaps = 2/255 (0%) Query: 4 QQQPPVYKIALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVANEPITVFCAGRTDAG 62 + + I L + YDG+ Y+G+QRQ + +VQ LE+ L + + I + AGRTDAG Sbjct: 8 EMKARARNIVLKVAYDGTAYHGFQRQTPPIVAVQNILEEKLQTIFGDTIELAAAGRTDAG 67 Query: 63 VHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYII 122 VH GQVV+F T N+ LP DI VR DF AR SA ++ Y Y I Sbjct: 68 VHAYGQVVNFFTDGRIPVDRIARAANSLLPDDIVVRAAGEADTDFSARHSAKSKTYVYRI 127 Query: 123 YNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHIN 182 + + ++ + PLD M A +LG +DF++FRA +P R + Sbjct: 128 QQGEVPDPMTARYAWYIRRPLDVAAMREALGAILGTHDFSAFRASGGAPMSPVRTMYEAT 187 Query: 183 VTR-HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAK 241 + G ++ I + F++HMVRNI+G+L VG + E+L +DRT A+ATA Sbjct: 188 IEEAAGQQLICRIHGSGFLYHMVRNIIGTLANVGLGVLTPARFGEILEGRDRTKASATAP 247 Query: 242 AEGLYLVAVDYPDRY 256 A GLYL VDY + + Sbjct: 248 ACGLYLEHVDYGEAF 262 >UniRef50_B9XDA1 Pseudouridylate synthase n=1 Tax=bacterium Ellin514 RepID=B9XDA1_9BACT Length = 270 Score = 299 bits (766), Expect = 7e-80, Method: Composition-based stats. Identities = 84/255 (32%), Positives = 129/255 (50%), Gaps = 4/255 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 K L I YDG Y GWQ Q VQ+++E+AL+++ + + RTD GVH G V Sbjct: 5 KFKLTIAYDGKNYSGWQVQKSGIGVQQRVEEALTKLFPSVGRIHSSSRTDTGVHAIGMVA 64 Query: 71 HFETTA---LRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 H E L +NA+LP DI V + V DFHARF A ++YRY ++N Sbjct: 65 HMEIPKAEFRMTSEKLALAINAHLPEDIRVMSAQKVAADFHARFDAAGKQYRYFVWNQTA 124 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQC-QSRTPWRNVMHINVTRH 186 +L + + LD + M AA+ G++DF SF A + + + R + ++ + Sbjct: 125 MNPLLREQAWQVPKELDLKAMRSAAKLFPGKHDFRSFAASRNYEVESTVRTLARCDIKKS 184 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G + I+ + F++ M R IVG+L++VG + I ++L +DR +A TA A GL Sbjct: 185 GSLLTFIIEGDGFLYKMCRGIVGTLVQVGQGKIAAADIKKILETRDRRVAGMTAPAHGLV 244 Query: 247 LVAVDYPDRYDLPKP 261 L V Y + + P Sbjct: 245 LWKVFYKSKAKVSVP 259 >UniRef50_Q813Z9 tRNA pseudouridine synthase A 2 n=77 Tax=Firmicutes RepID=TRUA2_BACCR Length = 245 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 134/245 (54%), Gaps = 1/245 (0%) Query: 9 VYKIALGIEYDGSKYYGWQR-QNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 ++ L I+YDG+++ GWQR N ++Q K+E +S++ + I + RTDAGVH Sbjct: 1 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QV +F++ + +N LP DI++ V+ V D FHAR+++ A+ Y Y I+N Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEEH 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + K H + L+ + M AA+ L+G +DFT+F + + ++ R V ++V Sbjct: 121 TNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVMEEA 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 +V + + N F+H+MVR IVG+L+EVG I +L K R A+A GLYL Sbjct: 181 GFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGLYL 240 Query: 248 VAVDY 252 V++ Sbjct: 241 ENVEF 245 >UniRef50_Q45557 tRNA pseudouridine synthase A n=5 Tax=Firmicutes RepID=TRUA_BACSV Length = 244 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 82/243 (33%), Positives = 133/243 (54%), Gaps = 2/243 (0%) Query: 11 KIALGIEYDGSKYYGWQR-QNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 L I+YDG +Y GWQR N ++Q K+E LS++ I + +GRTDAGVH GQV Sbjct: 3 NYKLMIQYDGGRYKGWQRLGNGENTIQGKIETVLSEMVGRKIEIIGSGRTDAGVHALGQV 62 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 + + + +N LP DI+V V VPD FH+R++A + Y Y I+N Sbjct: 63 ANVKLSENFTVKEVKEYLNRYLPHDISVTEVTLVPDRFHSRYNAKDKTYLYKIWNEDYTH 122 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 + K H + L + M +A+Q +GE+DFT+F + + +T R + I + + + Sbjct: 123 PFMRKYSLHIEKKLHIDNMVKASQLFVGEHDFTAFSNAKSKKKTNTRTIHSITIQDNQGF 182 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 + + + + F+++MVR +VG+L+EVG + + +L +KDR+ A A A GLYL Sbjct: 183 IDIRVCGDGFLYNMVRKMVGTLIEVGLGEKEPEQVLTILESKDRSQAGF-ADATGLYLEG 241 Query: 250 VDY 252 + + Sbjct: 242 ISF 244 >UniRef50_C9LN87 Pseudouridylate synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LN87_9FIRM Length = 265 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 82/244 (33%), Positives = 122/244 (50%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I + + Y+G+ Y G+QRQ +VQE LE AL ++ T++ A RTDAGVH GQ Sbjct: 1 MRNIRITLAYEGTAYSGFQRQENSITVQEILETALQKLTGTKTTLYFAARTDAGVHAYGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 F T + + +N LP DI V + VP DF R + + Y Y++ + Sbjct: 61 ECTFYTESSIPGDRFIFALNILLPPDIRVTESREVPYDFSVRRNNYGKTYGYLLTEEKDC 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 P + LD +M +AA+ L G +DFTSFR +P R + I + + Sbjct: 121 PPFFKRYTWQTGRKLDISKMEKAAEVLSGTHDFTSFRGNNSVPASPVRTIHDIRIIKKHH 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + + + F++HMVRNI G+L + G + E+L AKDR ATA A GL L+ Sbjct: 181 FFHIFVTGEGFLYHMVRNIAGALADAGTGKLTPKDLREILEAKDRKFLGATAPAHGLCLL 240 Query: 249 AVDY 252 V + Sbjct: 241 KVYF 244 >UniRef50_B1I1B5 tRNA pseudouridine synthase A n=5 Tax=Clostridia RepID=TRUA_DESAP Length = 250 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 135/246 (54%), Gaps = 3/246 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNE--VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + L + YDG+ Y+G+Q+Q+ + ++QE LE+ L++++ + V A RTDAGVH GQ Sbjct: 3 NVRLTLAYDGTAYHGFQKQSGSGLPTIQETLERCLAELSGAALKVTGASRTDAGVHARGQ 62 Query: 69 VVHFET-TALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 VV+F T +N LPGDIA + VP DFHAR+SA A+ Y Y +YNH + Sbjct: 63 VVNFVTGRWGIPTERIPAALNGVLPGDIAALDAREVPADFHARYSAVAKTYSYTLYNHPV 122 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 R H LD M AA+ L+G +DF++F+A ++ R + ++ Sbjct: 123 RSPFQRLYSLHVPRALDLRAMRLAARHLMGRHDFSTFQAAGRPVQSAVRTLTRADIEAQA 182 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 P V + +A+ F+++MVR + G+L+EVG + +++A+ DR A T GL L Sbjct: 183 PLVRLVFRADGFLYNMVRIMAGTLLEVGLERLDPEALPDIIASGDRARAGPTVPPHGLCL 242 Query: 248 VAVDYP 253 V+Y Sbjct: 243 EEVEYD 248 >UniRef50_D1VSK1 Pseudouridylate synthase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSK1_9FIRM Length = 243 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 80/242 (33%), Positives = 136/242 (56%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 I + + YDG+ Y+G+Q QN++++++ +L KA++ + ++ AGRTD GVH GQ V Sbjct: 2 NILIKVTYDGTNYHGYQVQNKLKTIEGELSKAINNTLKKETKIYSAGRTDRGVHALGQYV 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 +F T +N +LP DI+V K VP DFHARFSA + YRY++YN++ R A Sbjct: 62 NFYTDTTIDLGNLPRVINFHLPDDISVISAKEVPFDFHARFSAKEKIYRYVVYNNKYRNA 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + + LD M+ + + L+G+ DF SF + R + I V + ++ Sbjct: 122 IYHNRAYQYPFSLDLSLMNESFKYLIGQKDFKSFMGRDAIVKDTIRTIYSIKVKKDNKFI 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 D + +F+ +M+R I+G+ +E+G + ++ E+L ++R A TA + GLYL+ + Sbjct: 182 YFDFQGKSFLKNMIRIIMGTAIEIGRGKKDPIFMKEVLEKQNRKYAGPTAPSCGLYLMNI 241 Query: 251 DY 252 Y Sbjct: 242 LY 243 >UniRef50_C0GG81 Pseudouridylate synthase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GG81_9FIRM Length = 246 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 133/245 (54%), Gaps = 1/245 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 I L + YDG+ Y+G+Q Q +VQ+KLE+A+ +V + + + +GRTD GVH TGQV+ Sbjct: 3 NIKLTLGYDGTGYHGFQLQKNAVTVQQKLEEAIEKVMGQKVRITASGRTDTGVHATGQVI 62 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 +F +NA LP DI + + V D FHARF A + Y Y I N Sbjct: 63 NFFAQTGIPPQRIPHALNAVLPRDIVIYAAEIVSDSFHARFDAVGKTYTYTIDNGAHPQV 122 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + H PLDA M +AA L G++DFTSF A +T RN+ ++V + PY+ Sbjct: 123 LSRHHAYHVRFPLDANLMKQAAATLQGKHDFTSFMASGSSVKTTVRNLYRLDVEINWPYI 182 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + A+ F+++MVR I G+L+EVG + + ++ AK+R A T A GL L V Sbjct: 183 TITAAADGFLYNMVRIIAGTLIEVGRGKRD-HNLGPVIDAKNRHRAGWTVPAHGLVLREV 241 Query: 251 DYPDR 255 +Y + Sbjct: 242 EYNKK 246 >UniRef50_B0GAG0 Pseudouridylate synthase n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0GAG0_9FIRM Length = 266 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 81/265 (30%), Positives = 133/265 (50%), Gaps = 20/265 (7%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + +I + + YDG+ Y GWQ Q +++E L + +S++ E I + A RTD+GVH G Sbjct: 1 MRRIRIVVAYDGTNYCGWQIQPNGITIEEILNRQISKLTGEDIRIIGASRTDSGVHALGN 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSA-TARRYRYIIYNHRL 127 V F+T + + +N +P DI + V D+H R+ ++ Y Y IYN ++ Sbjct: 61 VAVFDTESRIPGDRFAYALNQKMPEDIVIVRSDEVQIDWHPRYQNEISKTYEYHIYNAKV 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT--- 184 R + ++ T LD E+M + A+ +LGE+DF SF V+ ++ R V I + Sbjct: 121 RNPLKNRYSTFVSFDLDVEKMRQGAKYILGEHDFASFCNVRTNAKDTVRTVHEITIKEIP 180 Query: 185 ----------------RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELL 228 + +V+ + N F+++MVR I G+L+ VG I ++L Sbjct: 181 MDKFQASNWGQENSNLENEKEIVIRVTGNGFLYNMVRIIAGTLIRVGRGFYEPEKIRDIL 240 Query: 229 AAKDRTLAAATAKAEGLYLVAVDYP 253 AK+ T TA GL LV++DYP Sbjct: 241 EAKEHTSEGITAPPNGLVLVSIDYP 265 >UniRef50_C2KUD3 Pseudouridylate synthase n=1 Tax=Oribacterium sinus F0268 RepID=C2KUD3_9FIRM Length = 265 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 80/259 (30%), Positives = 135/259 (52%), Gaps = 5/259 (1%) Query: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPIT-VFCAGRT 59 M+ +++ +I L + Y+G+ Y+G+Q+Q + ++ +E+ L + + A RT Sbjct: 1 MNKRKEEMEQRIVLKLAYEGTSYHGFQKQEGLSTIAGTVEEQLRNLFPWKMENFIGASRT 60 Query: 60 DAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYR 119 D GVH G ++ F+T +N+ LP DI V +V DFH RF+ + YR Sbjct: 61 DQGVHALGNLLSFDTEGKVSGEQILRALNSYLPEDIRVMEAYSVQQDFHPRFTPHRKAYR 120 Query: 120 YIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQS----RTPW 175 Y I ++ + + H+ PLD ++ + L GE+DF SF + QS + Sbjct: 121 YSICRSKVENPLRRRTAYHYTFPLDCGKISEGMELLKGEHDFRSFANPKAQSLLQGGSSV 180 Query: 176 RNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTL 235 R + ++ G Y+ ++ N F++HM+R + G+L+E+G S + E+L KDRTL Sbjct: 181 REIYRFSMEEEGDYLHFSVEGNGFLYHMIRILAGTLLELGRGRISLSQLEEILEKKDRTL 240 Query: 236 AAATAKAEGLYLVAVDYPD 254 A TA A+GL L+ +DY D Sbjct: 241 AGPTAPAKGLCLMNLDYGD 259 >UniRef50_A8R9F5 Pseudouridylate synthase n=2 Tax=unclassified Erysipelotrichaceae RepID=A8R9F5_9FIRM Length = 252 Score = 296 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 92/255 (36%), Positives = 136/255 (53%), Gaps = 6/255 (2%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + + + YDG+ Y GWQ+Q+ RS+QE++E AL+++ E + + +GRTDA VH QV Sbjct: 3 RYKVTVCYDGTNYAGWQKQDNARSIQEEIECALAKINEEAVEIVASGRTDAHVHALAQVF 62 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+ D W N+ LP DI + V+ V D FHARF A +RY Y I N L P Sbjct: 63 HFDAKKALSDEQWVRACNSLLPKDIRILKVEKVSDSFHARFDAVRKRYDYYITNDVLNP- 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQ-CQSRTPWRNVMHINVTRHGPY 189 L + + LD M A +G +DFTSF + + + ++ + + + V + Sbjct: 122 FLENYMGKDRKSLDVAYMQECANVFIGTHDFTSFTSSKIDERKSRIKTIYRLEVQQEANA 181 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 V + + NAF+ +MVR + L+E G H + I+++L AKD+ A A GLYLV Sbjct: 182 VHIIFEGNAFLRYMVRMLAQVLIEAGKHRLTKEAISQMLEAKDKHACRYKASANGLYLVR 241 Query: 250 VDYPDRYDLPKPPMG 264 VDY D PMG Sbjct: 242 VDYQDN----SSPMG 252 >UniRef50_Q2RNZ9 tRNA pseudouridine synthase A n=113 Tax=Alphaproteobacteria RepID=TRUA_RHORT Length = 278 Score = 296 bits (758), Expect = 7e-79, Method: Composition-based stats. Identities = 102/259 (39%), Positives = 141/259 (54%), Gaps = 2/259 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + L +EYDG Y GWQRQ+ ++Q+ LE+A ++ V +GRTD+GVH GQ Sbjct: 1 MVRYRLTVEYDGRGYCGWQRQDNGPTIQQSLEEAAFRLCGVATRVHGSGRTDSGVHALGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANL-PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 V H + A +NA+L P IAV V +DFHARFSA R YRY I N Sbjct: 61 VAHLDLPRAYGAATVMKALNAHLRPQPIAVIDAAEVAEDFHARFSAEERSYRYRILNRIA 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 P + V P++A M AAQ L+G +DF+SFRA +CQ+ +P + + + VTR G Sbjct: 121 PPTLDQGRVWWVARPMEAAIMDEAAQVLVGRHDFSSFRAAECQADSPVKTLSELRVTRVG 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + V +A +F+HH VRN+VG+L VG + L A DR+ A TA +GLY Sbjct: 181 DEIHVFARARSFLHHQVRNMVGTLALVGDGRWTADRLRAALEACDRSAAGPTAPPDGLYF 240 Query: 248 VAVDYPDRYDLPKPPMGPL 266 + V +P P GPL Sbjct: 241 LRVRFPGETAAPA-KAGPL 258 >UniRef50_B6BU98 Pseudouridylate synthase n=1 Tax=beta proteobacterium KB13 RepID=B6BU98_9PROT Length = 258 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 150/248 (60%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +IA +EY G+ Y G+Q Q + ++Q ++KALS++AN + + +GRTDAGVH GQV Sbjct: 2 RIAAIVEYLGTNYAGFQIQPNLNTIQLCIQKALSKIANHDVKIEASGRTDAGVHALGQVF 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+T + R +W G N+ LP DI+++WV V +FHARF+ R Y+Y+++ + A Sbjct: 62 HFDTESQRPLNSWKRGANSFLPQDISIKWVSEVDKNFHARFNVMEREYQYLLHCNDTPSA 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + + H+ ++ + + + + +G++DFTSFR+ +CQS+ P R + ++ + ++ Sbjct: 122 IWHQKAGHYGYEINFKLLDKVLKEFIGKHDFTSFRSSECQSKKPIRIMHDVSYQKKENFI 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + A+ F+HH +RN++ +++V + +P ++ L KDRT A+ T GLYL + Sbjct: 182 LFKFTADGFLHHQIRNMMSVILDVVSGKKPLDYVQYLFEVKDRTKASNTFSPNGLYLANI 241 Query: 251 DYPDRYDL 258 Y ++ + Sbjct: 242 KYEKKFKI 249 >UniRef50_B9JQX0 tRNA pseudouridine synthase A n=19 Tax=Alphaproteobacteria RepID=TRUA_AGRVS Length = 259 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 92/250 (36%), Positives = 136/250 (54%), Gaps = 3/250 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + L +EYDG+ Y GWQRQ+ SVQ LE A+ + E + + AGRTD+GVH +GQV Sbjct: 3 RYKLTVEYDGTPYVGWQRQDNGPSVQGALEAAVLGLTGETVAIRGAGRTDSGVHASGQVA 62 Query: 71 HFETTALRKDAAWTLGVNANLPGD---IAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 H + +NA+L I++ + VPD F ARFSA R Y Y I + Sbjct: 63 HVDLLRQWIPYKLRNALNAHLAQAGQAISILAAEAVPDAFDARFSALKRHYLYRIMSRPS 122 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 R A+ + +PLD E MH AAQ L+G +DFT+FR+V CQ+ +P R + ++V+R+G Sbjct: 123 RLALEANRAWWVSKPLDHEAMHAAAQMLVGNHDFTTFRSVHCQAISPVRTLDRLDVSRNG 182 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + + A +F+H+ +R+ G+L G + L A+DR A +GLY Sbjct: 183 DLIEIRASAQSFLHNQIRSFAGTLKMAGEGKMTPEDVRAALEARDRKACGPVAPPQGLYF 242 Query: 248 VAVDYPDRYD 257 + VDYP + Sbjct: 243 LQVDYPTDGN 252 >UniRef50_C5RHY1 Pseudouridylate synthase n=1 Tax=Clostridium cellulovorans 743B RepID=C5RHY1_CLOCL Length = 245 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 80/243 (32%), Positives = 126/243 (51%), Gaps = 1/243 (0%) Query: 11 KIALGIEYDGSKYYGWQR-QNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 L I+YDG Y GWQ+ + +++Q KLEK LS + +E + V +GRTDAGVH Q+ Sbjct: 3 NYKLTIQYDGKNYRGWQKLSDSDKTIQSKLEKVLSTLVDEEVNVIGSGRTDAGVHARKQI 62 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 +F T K LP DI V+ V + FHAR++A + Y Y I N Sbjct: 63 ANFHTEKDLKWKDVLKHCYTYLPEDIVVKSCDKVDEKFHARYNAKKKIYTYRICNSAFGD 122 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 A K + L+ ++M A++ +G +DF SF +++ + ++ R + I++ G Sbjct: 123 AFERKYSYLVDKKLNIDKMLAASKYFIGIHDFKSFTSMKSKKKSTVREIYDISINCIGDM 182 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 V + F+H+M+R + G+L+EVG I ++ +R+ A TA A GL+LV Sbjct: 183 VEITYIGEGFLHNMIRILTGTLIEVGLGKMKIDEIPTIMDGLERSDAGFTAPAHGLFLVD 242 Query: 250 VDY 252 V Y Sbjct: 243 VIY 245 >UniRef50_Q0F2X2 Pseudouridylate synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2X2_9PROT Length = 267 Score = 294 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 104/251 (41%), Positives = 146/251 (58%), Gaps = 3/251 (1%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 +IAL +E+DG ++GWQ+Q SVQ L+ AL V EP+TV AGRTDAGVH + Sbjct: 10 QRIALALEFDGRPFHGWQQQENATSVQACLQDALQAVEGEPLTVVAAGRTDAGVHAEALL 69 Query: 70 VHFETTA---LRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 VH + +A R A+ G N++LP +I V V+ V DFHARF+ R YRY I+N Sbjct: 70 VHADVSAARWQRSPRAYLHGCNSHLPDEIRVVGVRAVAADFHARFACRGRSYRYQIWNRN 129 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 A+ L+ E M AA LG +DF++ RA CQ+ +++ + + +H Sbjct: 130 TASALQRWRHWWMPRSLNIEAMQGAAVHCLGRHDFSALRAAGCQAAHAEKHIRSLEIVQH 189 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G + + + A+AF++HMVRN+VG+L+EVGA + A LLA++DR L AATA A GLY Sbjct: 190 GHCIHIHVSADAFLYHMVRNLVGNLVEVGAGKRSPDDFAALLASRDRQLGAATAPAHGLY 249 Query: 247 LVAVDYPDRYD 257 Y D Y Sbjct: 250 FTDAWYDDFYS 260 >UniRef50_Q250I7 Pseudouridylate synthase n=2 Tax=Desulfitobacterium hafniense RepID=Q250I7_DESHY Length = 271 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 89/261 (34%), Positives = 134/261 (51%), Gaps = 4/261 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQN--EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGT 66 I L + YDG+ Y+G+QRQ ++Q LE +++ E +T+ AGRTD GVH Sbjct: 4 KRNICLKVAYDGTYYHGFQRQPEFHGPTIQGTLEAVWAKLVEEEVTLNTAGRTDTGVHAA 63 Query: 67 GQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 GQVV+F T A N+ LP DI + + ++FHARFSA +RY Y I NH Sbjct: 64 GQVVNFRTGARIPVDKIPKAFNSLLPRDIRILAAQEAAENFHARFSAKWKRYDYRIDNHP 123 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 + H LD +RM + AQ L+G ++F +F A S+T R + V + Sbjct: 124 VADVFTRLYSLHEPVRLDWQRMQQGAQYLVGRHNFKAFSAAGGTSKTFERTLYLCQVAEN 183 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 ++ + + F+++MVR I G+L+ VG + I ++LA+ DR TA +GL Sbjct: 184 QGHLRITCIGDGFLYNMVRIIAGTLVYVGKNRIQPGEIPDILASLDRKRGGVTATPQGLT 243 Query: 247 LVAVDYPDRYDLPKPPMGPLF 267 L V Y + +LP+ LF Sbjct: 244 LSYVHYGE--ELPRDIFPELF 262 >UniRef50_A8SNL4 Pseudouridylate synthase n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SNL4_9FIRM Length = 247 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 76/245 (31%), Positives = 128/245 (52%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I L I YDGS ++G+Q+Q V +VQ ++E AL ++ E I + AGRTD GVH Sbjct: 1 MRNIMLTISYDGSLFFGFQKQKNVVTVQGEIEDALKKITEENINIISAGRTDRGVHSLRH 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 +++F T + + +N LP + V K V ++FH+RF A + Y+YI+ + Sbjct: 61 IINFHTESNVGVLNFKTALNHFLPIGVRVLDSKEVSENFHSRFDAKMKTYKYILNLDEVM 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + +F PLD E+M RA + +G F +F + + P R + + + Sbjct: 121 DPIYYNYKANFPYPLDIEKMKRAKEYFIGRKSFKAFMGPRTGNINPIREINSFEIYKENN 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 ++ IK +F+ + VR +VG+L+++G E + +L ++DRT A T GLYL+ Sbjct: 181 DLIFLIKGQSFIRNQVRIMVGTLVDIGRGLIEEDELERILDSEDRTRAGVTLSPNGLYLM 240 Query: 249 AVDYP 253 + Y Sbjct: 241 EILYD 245 >UniRef50_Q5FPX3 tRNA pseudouridine synthase A n=1 Tax=Gluconobacter oxydans RepID=TRUA_GLUOX Length = 275 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 112/249 (44%), Positives = 149/249 (59%), Gaps = 4/249 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVA-NEPITVFCAGRTDAGVHGTGQV 69 + AL IEYDG+ Y GWQ+QN+ S+Q +E A S++ N P+ AGRTDAGVH G V Sbjct: 22 RWALRIEYDGTGYLGWQKQNDGTSIQGLIEAAASKLVRNRPVPSITAGRTDAGVHAAGMV 81 Query: 70 VHFETT--ALRKDAAWTLGVNANL-PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 +H + A G+ +L P + V V +++ARFSAT R YRY I N Sbjct: 82 IHLDFPDDAPIDARQIRDGMGYHLKPHRVVVLETAKVGPEWNARFSATWRSYRYTILNRP 141 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 RP ++ V H PLD + M +AA LLG +DFTSFRAV CQ+R+P R + +N+ R Sbjct: 142 ARPGLMENRVWHIKRPLDVDLMQQAANHLLGPHDFTSFRAVACQARSPIRTLDVLNIHRD 201 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G V++D KA +F+HH VRN+ G+LM +G+ P I E+L AKDR A TA EGL Sbjct: 202 GELVMIDTKARSFLHHQVRNMAGTLMMIGSRQWPVEKIIEILEAKDRCAAGQTAPPEGLC 261 Query: 247 LVAVDYPDR 255 L+ V YPD Sbjct: 262 LMDVGYPDD 270 >UniRef50_A9BNH5 tRNA pseudouridine synthase A n=9 Tax=cellular organisms RepID=TRUA_DELAS Length = 282 Score = 293 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 108/281 (38%), Positives = 157/281 (55%), Gaps = 22/281 (7%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++ALG+ Y+G +Y GWQ Q ++Q+ LE AL + A + + CAGRTDAGVHG QVV Sbjct: 2 RVALGVAYNGQRYSGWQSQLSGNTIQDHLEAALGRFAAQEVHTLCAGRTDAGVHGLMQVV 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+T R +W G N LP DIAV+W + VPD FH+R ATARRY Y++ +RP+ Sbjct: 62 HFDTPLDRAPFSWVRGTNTFLPPDIAVQWAQPVPDAFHSRACATARRYAYVLLQSPVRPS 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR----- 185 V + V + LD + M AA+ LLGE+DF+SFRA CQ+++P + + +++TR Sbjct: 122 VEAGRVGWVFHALDGDAMQAAARHLLGEHDFSSFRASGCQAKSPVKTLHRLSITRRMAGD 181 Query: 186 -----------------HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELL 228 Y + + +AF+HHMVRNI+G L+ +G W+ ++L Sbjct: 182 GAQMAAASSMRPGDAAMECCYWRFEFEGSAFLHHMVRNIMGCLIAIGQGTYAPQWMQQVL 241 Query: 229 AAKDRTLAAATAKAEGLYLVAVDYPDRYDLPKPPMGPLFLA 269 A+ R AA T +GLY + Y + LP +L Sbjct: 242 DARSRDAAAPTFSPDGLYFLGPVYDPSWGLPSRSPAYDWLP 282 >UniRef50_B9DM46 tRNA pseudouridine synthase A n=6 Tax=Staphylococcaceae RepID=TRUA_STACT Length = 267 Score = 292 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 82/241 (34%), Positives = 125/241 (51%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +I + I Y GS + G+Q Q R+VQ++ EK L ++ + + + RTD GVH Q Sbjct: 2 RILVKISYQGSNFLGFQIQQHGRTVQQQFEKILKRMHKRHVRIHPSSRTDRGVHAIEQYF 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+T W +N+ LP DI V V V DDFH R+ +RYRY +Y + R Sbjct: 62 HFDTELNIAPDKWQYAMNSALPDDIYVNEVSIVDDDFHCRYDCVGKRYRYKVYQGKHRDV 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 +S T + + LD E+M+ AAQ +G +DFT F + + + + R + + + Sbjct: 122 FMSGLKTFYADSLDLEKMNEAAQQFIGTHDFTGFCSQKTEVESKERTLYQSEIIKTENGF 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + + F+++MVR +V L+EVG + + LL AKDR TA AEGLYL + Sbjct: 182 DYIVTGSGFLYNMVRVLVAFLIEVGKGKRQPEEVPILLEAKDRKQVPFTAPAEGLYLEKI 241 Query: 251 D 251 Sbjct: 242 Y 242 >UniRef50_A7HKV8 tRNA pseudouridine synthase A n=11 Tax=Thermotogaceae RepID=TRUA_FERNB Length = 246 Score = 292 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 135/246 (54%), Gaps = 2/246 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + ++A+ YDG+ ++G+Q QN VR+VQ +LEKAL +V I + AGRTD GVH GQ Sbjct: 1 MRRVAIEFSYDGTDFFGYQIQNNVRTVQGELEKALEKVFKIHIDTYAAGRTDTGVHANGQ 60 Query: 69 VVHFETTALR-KDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 VV F+ R + +NANLPGDI ++ V F+ R+ A R Y Y I + Sbjct: 61 VVSFDCPNDRLMENDIKNAINANLPGDIYIKKVWFTHPTFNPRYEAKRRIYHYYIDTSKS 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + + V F LD E+M AA+ L+GE+DF SF ++ R + ++ + Sbjct: 121 KNLFTRRYVWWFPYELDIEKMRIAAKYLIGEHDFISFSKKGEENTKTIRTINNLRIIEIK 180 Query: 188 PYVV-VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 ++ + ++ +F+ MVR+IV +L+ VG + E+L +KDR+ +A A A GL+ Sbjct: 181 NGLILIRVEGISFLRGMVRSIVANLVRVGTGIWEPEKVKEVLESKDRSKSAGLAPAHGLF 240 Query: 247 LVAVDY 252 L V + Sbjct: 241 LYKVLF 246 >UniRef50_B9KIN8 tRNA pseudouridine synthase A n=5 Tax=Anaplasmataceae RepID=TRUA_ANAMF Length = 247 Score = 292 bits (748), Expect = 8e-78, Method: Composition-based stats. Identities = 100/246 (40%), Positives = 142/246 (57%), Gaps = 4/246 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEV--RSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + +EYDG+ + GWQRQ V RSVQE +E A+ +++ + +TVF AGRTDAGVH GQ Sbjct: 2 RYRAVVEYDGTAFIGWQRQKGVAGRSVQESIEDAIYRLSQQHVTVFAAGRTDAGVHALGQ 61 Query: 69 VVHFETTALRKDAAWTLGVNANLPGD-IAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 VVHF+ +D +N L D +++ ++ + FHARFSA R Y Y I N Sbjct: 62 VVHFDLNTSLQDYVIKNALNHYLRSDMVSILSLEEAAEGFHARFSAKKRHYMYKIVNRDA 121 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGEN-DFTSFRAVQCQSRTPWRNVMHINVTRH 186 P + + H + L+ M AA ++GE DF SFRA +CQS++ R V I+ R Sbjct: 122 PPCLDRLRMWHVPKQLNVSDMQEAASHMVGEKKDFASFRAKECQSKSSVRTVDRIDCVRE 181 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G + V + A +F+H VR IVG+L++ G P S++ E+L K+R A TA GLY Sbjct: 182 GNNIFVHVSAKSFLHKQVRIIVGTLVQCGHGAFPPSYVLEILERKNRAAAGITAPPHGLY 241 Query: 247 LVAVDY 252 LV V+Y Sbjct: 242 LVLVEY 247 >UniRef50_Q6MEE7 tRNA pseudouridine synthase A 1 n=2 Tax=Parachlamydiaceae RepID=TRUA1_PARUW Length = 256 Score = 290 bits (744), Expect = 2e-77, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 134/248 (54%), Gaps = 4/248 (1%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN-EPITVFCAGRTDAGVHGTGQVV 70 L I YDG+ Y GWQ Q S+Q+K+++AL + E + + +GRTDAGVH GQV Sbjct: 4 YKLTIAYDGTNYSGWQIQPNASSIQQKIQEALCILLKKEKVVLVGSGRTDAGVHAKGQVA 63 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF + + +N LP DI ++ V+ V FH+++SA + Y Y ++ +++ Sbjct: 64 HFHFQDYIDLSRLHVSLNGLLPRDIRIKAVEPVSPRFHSQYSAIRKEYHYYLHLNKVMDP 123 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRA---VQCQSRTPWRNVMHINVTRHG 187 HF +D + +AA G +DFTSF ++ P R + +++ + Sbjct: 124 FQRLYSWHFQRKIDVNILKKAAILFTGTHDFTSFANEAHRGTAAKNPVRTLYRLDIKPNE 183 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + ++ + + F++ MVRNIVG+LM+V +H + I ++ AAK+R A+ A EGL+L Sbjct: 184 GGLRLEFEGDGFLYKMVRNIVGTLMDVASHKRAIEEINQIFAAKNRRQASLAAPPEGLFL 243 Query: 248 VAVDYPDR 255 + V Y + Sbjct: 244 IQVFYENE 251 >UniRef50_A5I338 Pseudouridylate synthase n=17 Tax=Firmicutes RepID=A5I338_CLOBH Length = 246 Score = 290 bits (744), Expect = 2e-77, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 128/246 (52%), Gaps = 1/246 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQN-EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + I L I+YDGSKY GWQ+Q ++Q K+E LS + E I + +GRTD GVH Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QV +F TT LP DI V V + FH+R + ++Y Y I N + Sbjct: 61 QVANFHTTFQGSTDEILSYCYEYLPKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNKKF 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 K H E LD E M A L+G +DF SF A + + ++ R + I++ + Sbjct: 121 HDVFSRKYSYHVPETLDIEAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIKKD 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 YV + + F+H M+R + G+L+E+G HN + +L A+DR A TA ++GL++ Sbjct: 181 SYVDIVYLGSGFLHKMIRILTGTLIEIGLHNLKSVDVKIILDAEDRRKAGPTAPSQGLFM 240 Query: 248 VAVDYP 253 +VDY Sbjct: 241 TSVDYE 246 >UniRef50_C5NXQ0 Pseudouridylate synthase n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXQ0_9BACL Length = 265 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 132/248 (53%), Gaps = 3/248 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++ L YDGS Y+G+Q Q ++QE++EK+L ++ + + ++ +GRTD+GVH GQV+ Sbjct: 2 RVVLLCRYDGSNYHGFQIQPNNNTIQEEIEKSLKKINKKDVRLYMSGRTDSGVHAYGQVL 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+T D AW +NA +P DI + + +DFH R+++T + Y Y ++ R Sbjct: 62 HFDTDLNIPDEAWVKALNATIPKDIRIVGATSASEDFHVRYNSTQKTYYYKLHIGREVDP 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH---G 187 L V + E+ A Q +GE+DF+SF + R + + + + Sbjct: 122 FLLNYVGKHSFDFNFEKAQEALQYFIGEHDFSSFCSKNSSVEDKVRTIYSLTMEKDLINP 181 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 V +I N F+++MVR I+G++ V A +++ E+L K+R A A A GLYL Sbjct: 182 NIVNFEITGNGFLYNMVRIIIGTIQNVAAGKYEANYVKEILEKKERQFAGPKADAAGLYL 241 Query: 248 VAVDYPDR 255 V Y D Sbjct: 242 KEVLYDDD 249 >UniRef50_C2DZZ6 Pseudouridylate synthase n=9 Tax=Lactobacillus RepID=C2DZZ6_9LACO Length = 262 Score = 289 bits (740), Expect = 8e-77, Method: Composition-based stats. Identities = 89/257 (34%), Positives = 139/257 (54%), Gaps = 7/257 (2%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVA-NEPITVFCAGRTDAGVHGTGQV 69 + + + YDG ++G+Q+Q R+VQ +E+AL ++A + I V +GRTDAGVH GQV Sbjct: 3 RFKMTMAYDGHLFHGFQKQPNQRTVQGTIEEALKKMAKGQRIVVHGSGRTDAGVHALGQV 62 Query: 70 VHFETTA-LRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 +HF+ L +N+ +P DI + + V +DFH ++S + YRYI+ R Sbjct: 63 IHFDFPNDNIPANRMVLALNSMMPTDIIFKDAEIVNEDFHVQYSTHGKWYRYIVNQDRFV 122 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR--H 186 H+ L+ +M AA LLGE+DFTSF A Q R + ++ + + Sbjct: 123 DPFKRFYTGHYPYKLNVSKMQEAALDLLGEHDFTSFAASGGQIIDKVRTIYYVKIWQKSE 182 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 ++ D N F+++MVR +VG+L+E+G +P + ++ AKDR TA A GLY Sbjct: 183 ENEIIFDFIGNGFLYNMVRIMVGALLEIGNERRPVHDLKRVILAKDRQEVRNTAPASGLY 242 Query: 247 LVAVDY---PDRYDLPK 260 L V Y P++Y L K Sbjct: 243 LYHVFYEEVPEKYRLDK 259 >UniRef50_A9KLD6 Pseudouridylate synthase n=2 Tax=Clostridium RepID=A9KLD6_CLOPH Length = 248 Score = 288 bits (739), Expect = 9e-77, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 131/247 (53%), Gaps = 3/247 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNE---VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHG 65 + I L IEYDGS+Y GWQ+Q ++Q+KLE L+++ NE +TV A RT+AGVH Sbjct: 1 MRNIQLIIEYDGSRYDGWQKQAGNQKSITIQDKLEDVLNKMENETVTVIGAARTEAGVHA 60 Query: 66 TGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 QV F T + K +N LP DIAV VP+ FHA F+A + Y Y I Sbjct: 61 YKQVASFMTNSKLKVYEIKQYLNRFLPRDIAVLEALEVPERFHASFNAGSFEYEYKISIG 120 Query: 126 RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR 185 + K + ++ D +M AA+ L+G++DF +F + ++ R + + + Sbjct: 121 EVPSVFERKYNYYCFKRPDIAKMKEAAKYLVGKHDFKAFSDNKRMKKSTEREIYSLEIYG 180 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 +V+ + + F HMVR +VG+L++VG I +L +KDR A T +A+GL Sbjct: 181 DEKEIVITVHGDDFWPHMVRIMVGTLLDVGLSKIEPMDIKRILESKDRDKAGETIEAKGL 240 Query: 246 YLVAVDY 252 +L V Y Sbjct: 241 FLTEVHY 247 >UniRef50_Q031N1 tRNA pseudouridine synthase A n=66 Tax=Streptococcaceae RepID=TRUA_LACLS Length = 253 Score = 288 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 86/253 (33%), Positives = 134/253 (52%), Gaps = 3/253 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQV-ANEPITVFCAGRTDAGVHGTG 67 + + I YDG+ + G+Q Q R+VQE++EK LS++ + EP+ + +GRTD+GVH G Sbjct: 1 MTRYKATIAYDGTDFAGFQSQTNQRTVQEEIEKVLSKLNSFEPVILQGSGRTDSGVHAFG 60 Query: 68 QVVHFETTAL-RKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 QV+HF+ R G++ P DIAV+ V+ VPDD+HAR+ + Y Y + N Sbjct: 61 QVIHFDLNGKARDLERLRFGLDTQTPADIAVKKVELVPDDWHARYQKHEKTYEYYLENSV 120 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR- 185 R +F PL+ E M A L+G++DFT F A R + + + Sbjct: 121 TRSPFHRHSKAYFRYPLNFELMQGAMAKLVGQHDFTGFTASGSSVDDKVRTIYQAEIIQL 180 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 + N F++ VRN+VG+++++G P S I ++L +K+R A TA EGL Sbjct: 181 DKENFKFIFRGNGFLYKQVRNMVGTVIKIGNDRMPVSQIDKILTSKNRNFAGPTAAPEGL 240 Query: 246 YLVAVDYPDRYDL 258 YL V Y ++ Sbjct: 241 YLKEVKYEPINEI 253 >UniRef50_Q7MBB9 tRNA pseudouridine synthase A n=1 Tax=Gloeobacter violaceus RepID=TRUA_GLOVI Length = 304 Score = 288 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 134/246 (54%), Gaps = 1/246 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++AL ++Y G ++GWQ Q R+VQ+ LE+A ++A P+ AGRTD GVH +GQVV Sbjct: 16 RLALRVQYLGGHFFGWQWQPGQRTVQQCLEEATERIARHPVRYHAAGRTDTGVHASGQVV 75 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+T W G+N+ LP DIAVR V D +HARF+A R YRY I+N + Sbjct: 76 HFDTHKKLAPETWVRGLNSLLPDDIAVRAAAYVSDHWHARFTALWREYRYCIHNSTVPDL 135 Query: 131 VLSKGVTHFYE-PLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 + ++ PLD+E + A L G +DF +FR +V TR G Sbjct: 136 FVRAQSWYYPYCPLDSEAVAAALATLPGHHDFRAFRRAGSSRPHSLVHVYTAECTREGEQ 195 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 + + ++AN+F++ M+R ++G+L EVG+ A L A +R A +GL LV Sbjct: 196 IAIRVRANSFLYGMMRLLIGALAEVGSGRWSVERFAGLWQAGNREQVKYAAPPQGLCLVG 255 Query: 250 VDYPDR 255 V YPD Sbjct: 256 VGYPDD 261 >UniRef50_C1XI54 Pseudouridylate synthase n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XI54_MEIRU Length = 263 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 87/249 (34%), Positives = 125/249 (50%), Gaps = 7/249 (2%) Query: 9 VYKIALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + +I L +EYDGS + G Q Q R+VQ++LE ALSQ+ ++ GRTDAGVH Sbjct: 12 LRRILLTLEYDGSGFAGLQTQAQGERTVQQELEAALSQIPGARPKIWPCGRTDAGVHALA 71 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 VH++T +N LP DI + VP DFHAR S R YRY I R+ Sbjct: 72 MPVHYDTLDNIPTEKIPHALNTLLPPDIRALAAQEVPADFHARKSCHWREYRYRILQRRM 131 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT--- 184 PA+ V L+ M A +CL+G +DF +F + R R + ++ Sbjct: 132 PPALDRHRVWWIPHSLNLIPMRHALECLVGTHDFKAFAVK--EERATVREIYRAHLEVWP 189 Query: 185 -RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 G + ++ + F+ VR++VG+L+E+G + S I LLA+ R A TA A+ Sbjct: 190 TEGGREIWIEFVGSGFLRGQVRSMVGTLVEIGLGKRDSSSIQSLLASGSRKDAGPTAPAQ 249 Query: 244 GLYLVAVDY 252 GLY V Y Sbjct: 250 GLYFVRAGY 258 >UniRef50_Q89ZY4 tRNA pseudouridine synthase A n=12 Tax=Bacteroidetes RepID=TRUA_BACTN Length = 269 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 90/250 (36%), Positives = 128/250 (51%), Gaps = 5/250 (2%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + + + YDG+ Y+GWQ Q SVQE L KALS + V AGRTDAGVH + Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGSSVQECLMKALSTFLRRDVEVIGAGRTDAGVHASLM 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V HF+ + +N LP DI+V V+ V D HARF ATAR Y+Y + + Sbjct: 61 VAHFDHEDVLDTVTVADKLNRLLPPDISVYRVRQVKPDAHARFDATARTYKYYVTTAKY- 119 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR--- 185 + Y LD ERM+ AA+ L DFTSF + +T ++ H T+ Sbjct: 120 -PFNRQYRYRVYGSLDYERMNEAARTLFEYIDFTSFSKLHTDVKTNICHISHAEWTKMEG 178 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 V I+A+ F+ +MVR IVG+L+EVG +++ +DR A +A L Sbjct: 179 EDTTWVFTIRADRFLRNMVRAIVGTLLEVGRGKLTVEGFRKVIEQQDRCKAGTSAPGNAL 238 Query: 246 YLVAVDYPDR 255 +LV V+YP+ Sbjct: 239 FLVNVEYPED 248 >UniRef50_C4XPZ9 tRNA pseudouridine synthase A n=4 Tax=Desulfovibrio RepID=TRUA_DESMR Length = 274 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 93/269 (34%), Positives = 129/269 (47%), Gaps = 15/269 (5%) Query: 11 KIALGIEYDGSKYYGWQRQ--NEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 ++ L + YDG+ + GWQ Q R+VQ LE+AL+ + +P+ V AGRTD+GVH Q Sbjct: 3 RLRLTLAYDGTDFAGWQIQAAGGGRTVQGCLEEALATLCGQPVRVHGAGRTDSGVHALAQ 62 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V H + R W + A LP D+AV + V DFH+RF AT + YRY ++ Sbjct: 63 VAHADVPEHRAGLPWGKALTALLPKDVAVTEARLVAPDFHSRFDATGKEYRYTLWTRPGH 122 Query: 129 PAVLSKGVTH---FYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHI-NVT 184 + Y LD M A +GE+DF +F+ + R V + + Sbjct: 123 VLPWRRPYVWDVGRYGTLDVAAMEACAGLFVGEHDFAAFQNAGTDVHSTVRRVWDVSRLA 182 Query: 185 RHGPY-VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 GP V F+ MVRN++G+L+ VG +A LLAA DR A TA A+ Sbjct: 183 GTGPDETVWRFHGEGFLKQMVRNLMGALVAVGRGKATAEDVATLLAAGDRRRAPGTAPAQ 242 Query: 244 GLYLVAVDY--------PDRYDLPKPPMG 264 GL L AV+Y P D P P G Sbjct: 243 GLCLHAVEYGAPGVAGLPGLGDKPAEPAG 271 >UniRef50_Q6G7A2 tRNA pseudouridine synthase A n=59 Tax=Staphylococcus RepID=TRUA_STAAS Length = 267 Score = 287 bits (735), Expect = 3e-76, Method: Composition-based stats. Identities = 86/251 (34%), Positives = 131/251 (52%), Gaps = 1/251 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +I + I Y G+ + G+Q Q R+VQ++ EK L ++ + + + RTD GVH Q Sbjct: 2 RILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQYF 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+T + W +N LP DI V V TV DDFH R+ +RYRY +Y + R Sbjct: 62 HFDTELNIPMSQWQYAMNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDP 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 S T E LD ++M+RAAQ +G +DFT F + + + + R + + + Sbjct: 122 FQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTDDGF 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + + F+++MVR +V L+EVG S + +LL +K+R TA AEGLYL + Sbjct: 182 DYIVTGSGFLYNMVRVLVAFLIEVGKGRHEISDVPKLLESKNRKNVPFTATAEGLYLEKI 241 Query: 251 DYPDRYDLPKP 261 Y D +L K Sbjct: 242 -YLDENELLKD 251 >UniRef50_B3QUL0 Pseudouridylate synthase n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QUL0_CHLT3 Length = 265 Score = 287 bits (735), Expect = 3e-76, Method: Composition-based stats. Identities = 82/247 (33%), Positives = 135/247 (54%), Gaps = 5/247 (2%) Query: 9 VYKIALGIEYDGSKYYGWQRQN---EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHG 65 + + +EYDG+ + GWQRQ +++Q ++E L +V EP+ + AGRTDAGVH Sbjct: 18 RRNLKMLLEYDGTDFAGWQRQPQNLHQKTIQGEIESVLCRVLQEPVELIAAGRTDAGVHA 77 Query: 66 TGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 QV +F T + +N LP I + ++ P++F+ARF A +R YRY + Sbjct: 78 KAQVANFLTENSLSISRLKHALNGLLPSQIKIIEIEDAPENFNARFDAKSRTYRYFLLTR 137 Query: 126 RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR 185 A+LS+ + DA M+ Q +LG++DFTSF Q++T + + Sbjct: 138 Y--SALLSRFTGIYRYDFDARAMNACCQEILGQHDFTSFSKAGSQTKTRICTIEKARWYQ 195 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 ++++I+AN F+H MVR +VG++++VG + +AKD LAA +A+ +GL Sbjct: 196 RKNGLMLEIRANRFLHSMVRLLVGTMIKVGNGELSVQDFDAIFSAKDVCLAATSAQPQGL 255 Query: 246 YLVAVDY 252 +L V+Y Sbjct: 256 FLWHVEY 262 >UniRef50_A8GUM4 tRNA pseudouridine synthase A n=19 Tax=Alphaproteobacteria RepID=TRUA_RICB8 Length = 245 Score = 287 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 140/245 (57%), Gaps = 1/245 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 +Y+ + +EY G+ GWQRQ+ V SVQ+ LE+A+ + + E +T+F +GRTDAGVH GQ Sbjct: 1 MYRYKISVEYLGTNLAGWQRQSGVMSVQQILEEAIYKFSGEQVTLFGSGRTDAGVHAIGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIA-VRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 + HF+ + + +N I V + V ++FHARFSA AR Y Y I N Sbjct: 61 IAHFDLSKYFEPYKIIRAINYFTRPYIVGVCNCELVDNNFHARFSAIARHYVYRILNRPY 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + V PLD M +++ LLG+++FTSFRA CQS++P + + +++ + Sbjct: 121 PSVIDFDRVWWISVPLDVSAMQKSSLYLLGKHNFTSFRASSCQSKSPIKTLTKLDIIKEN 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + + A +F+HHMVRNIVGSL+ VG + + ++L DR A TA A GLY Sbjct: 181 EEIKLYFSAPSFLHHMVRNIVGSLVLVGKNIWQAEQMQQVLEVADRKAAGPTAPACGLYF 240 Query: 248 VAVDY 252 + DY Sbjct: 241 IKADY 245 >UniRef50_C1ZAN4 Pseudouridylate synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZAN4_PLALI Length = 305 Score = 287 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 132/280 (47%), Gaps = 22/280 (7%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + L I YDG+ Y GWQ Q S+Q L +A+ + E ++ AGRTDAGVH GQ Sbjct: 5 SRTLKLTIAYDGTAYCGWQTQPNGVSIQSTLMQAIQEFTAETPVLYAAGRTDAGVHAVGQ 64 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 VV F TT+ A + + LP DI +R V+ V FHA+F A + YRY+ +N + Sbjct: 65 VVSFSTTSPVPAANFRPALQRFLPDDIVIRQVEDVQPGFHAQFHARLKTYRYLFHNAPVW 124 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR--- 185 + LD + M A + ++G DF S +T R V+ +V R Sbjct: 125 SPFYRQYALWHRTRLDEQAMDFAIRQIVGTFDFRSLETQWPNRKTSVRTVIKASVQRIRN 184 Query: 186 ------------------HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAEL 227 G ++ ++I AN F+++MVR I G+L+ +G + E+ Sbjct: 185 WNLLGENGPPSEECQLDPEGEFLCMEITANGFLYNMVRTIAGTLIHIGRGKWGPEKLREI 244 Query: 228 LAAKDRTLAAATAKAEGLYLVAVDY-PDRYDLPKPPMGPL 266 + +DR A TA A GLYL VDY P LP + P Sbjct: 245 VDLQDRRRAGETAPAHGLYLWHVDYAPATQSLPTGDLPPA 284 >UniRef50_A9WH95 tRNA pseudouridine synthase A n=5 Tax=Chloroflexaceae RepID=TRUA_CHLAA Length = 278 Score = 287 bits (734), Expect = 4e-76, Method: Composition-based stats. Identities = 99/249 (39%), Positives = 131/249 (52%), Gaps = 4/249 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + IAL + YDG+ + G Q Q ++R+VQ LE A + E + AGRTDAGVH TGQ Sbjct: 1 MRTIALLLAYDGTDFAGSQWQTDIRTVQGALESAWEALTQERRRIVLAGRTDAGVHATGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V H +TT G+NA+LP D+A++ V DFHARFSA R YRY+I Sbjct: 61 VAHVQTTTRHNLQTIWRGLNAHLPVDLAIQNVGEAVPDFHARFSAIQREYRYLIDCAAAP 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR--- 185 L V H+ LD M A + L G +DF +F R+ R + V Sbjct: 121 LPQLRHQVLHYAGTLDVAAMTAALKLLEGTHDFAAFTTATPAQRSTVRTMYWTRVGDYEW 180 Query: 186 -HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 + +++ ANAF+ HMVR IVG+L+ VG E+LA++DR LA TA A G Sbjct: 181 FERRLLAIEVAANAFLQHMVRMIVGTLLLVGRGRMTVDQFGEVLASRDRRLAGPTAPAHG 240 Query: 245 LYLVAVDYP 253 L L AV YP Sbjct: 241 LTLTAVRYP 249 >UniRef50_A9KR47 Pseudouridylate synthase n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KR47_CLOPH Length = 264 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 84/259 (32%), Positives = 124/259 (47%), Gaps = 9/259 (3%) Query: 5 QQPPVYKIALGIEYDGSKYYGWQR----QNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60 + I L I YDG+ Y GWQR N S+Q LE+ LS+V EPI + +GRTD Sbjct: 4 EMDRKRNIKLIISYDGTNYSGWQRIPKAANGDHSIQGLLEEFLSKVLLEPIKLIGSGRTD 63 Query: 61 AGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRY 120 GVH GQV +F + + +N LP DI + V +FH+RF A + Y+Y Sbjct: 64 TGVHALGQVANFYSRSNLDVNIIRQKMNQVLPEDIKILQANEVDLNFHSRFDAVEKIYQY 123 Query: 121 IIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMH 180 II K + LD E M +AA+ L+G D+ SF + ++ R + Sbjct: 124 IIDTKERESVFFRKYSYSCGKDLDIEAMRQAAKLLIGTMDYKSFCTDRKDGKSTIRTISE 183 Query: 181 INVT-----RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTL 235 I + R+ ++ + N F+HHM+R I G+L+EVG + + + + K R Sbjct: 184 ITIEELRQNRNQQGIIFTFRGNGFLHHMIRIISGTLLEVGTQERSVESVRQAILGKKREY 243 Query: 236 AAATAKAEGLYLVAVDYPD 254 A T +GL+L V Y Sbjct: 244 AGITLYPQGLFLKQVIYDK 262 >UniRef50_B0S2E1 tRNA pseudouridine synthase A n=3 Tax=Bacteria RepID=TRUA_FINM2 Length = 244 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 83/244 (34%), Positives = 135/244 (55%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I L ++YDGSK+YGWQ+ N++ SVQ ++EKA++++ ++P+ + AGRTD GVH GQ Sbjct: 1 MKNIKLTVQYDGSKFYGWQKLNDLPSVQLEIEKAVTKMVHQPVKINGAGRTDKGVHAKGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V +F + +GVN I + + + DFHARFSA ++ Y+YI+ N Sbjct: 61 VCNFIVDTDISANQFLMGVNHFTSDSIVIVKSEEMDLDFHARFSAKSKTYKYILCNKYYM 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + H LD + + + L+G++DFTSF + P R + I + + Sbjct: 121 EPWFNDYKGHRKYYLDFDLLLKCRDMLIGKHDFTSFVNDLEEDINPVRTIDEITIEKIDD 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 +V KA +F+ +MVR +VGS+++V + W+ L KDR A T + GLYL+ Sbjct: 181 DIVFTFKAESFLRNMVRILVGSMVDVARGRKSIDWLKNALENKDRQSAGITIEPSGLYLM 240 Query: 249 AVDY 252 ++Y Sbjct: 241 DIEY 244 >UniRef50_A8SWG9 Pseudouridylate synthase n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SWG9_9FIRM Length = 271 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 75/271 (27%), Positives = 119/271 (43%), Gaps = 26/271 (9%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQV---------------------- 46 + YDG++Y+GW+ + +V+ ++E LS++ Sbjct: 1 MTNYRFTFSYDGTRYHGWESKTNADTVEGRIEAVLSKMVDGDNGKTADVCRENMSADIRD 60 Query: 47 --ANEPITVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVP 104 + + AGRTDAGVH V R +N LP DI V Sbjct: 61 TKTPAKVDIHGAGRTDAGVHARAMVASGRLNTNRTPDEIKDYLNRYLPADICALDVTVAG 120 Query: 105 DDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEP--LDAERMHRAAQCLLGENDFT 162 D FHAR +AT + Y Y +Y +P V + LD + M +AA L+G++DF Sbjct: 121 DRFHARLNATGKIYEYTLYVGLEKPVFDRNYVWCVPQGSVLDVDAMKKAASYLVGKHDFR 180 Query: 163 SFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPES 222 SF ++ R + + + + G YV + N F+ +MVR + G+L+E+G + Sbjct: 181 SFCGNNKMKKSTVRTIYDVEIVKEGDYVRMRFHGNGFLQNMVRILTGTLVEIGYGHMDAE 240 Query: 223 WIAELLAAKDRTLAAATAKAEGLYLVAVDYP 253 + E++ DR LA TA GL L+ V+Y Sbjct: 241 HMPEIIVGMDRQLAGPTAPPHGLCLLKVEYD 271 >UniRef50_Q253C0 tRNA pseudouridine synthase A n=12 Tax=Chlamydiaceae RepID=TRUA_CHLFF Length = 268 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 87/252 (34%), Positives = 129/252 (51%), Gaps = 3/252 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + ++ L + Y G+ Y GWQRQ S+QE +E AL++V +PI V +GRTD+GVH GQ Sbjct: 1 MKRVVLLLAYQGTAYAGWQRQPNDLSIQEVIESALARVLGKPIVVSSSGRTDSGVHAYGQ 60 Query: 69 VVHF---ETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 V HF + + + +NA LP DI +R V +FHARFSA A+ YRY + Sbjct: 61 VAHFSQPDHPLFSQPQSIKKMLNAILPKDIVIRDVVLSDVNFHARFSAIAKEYRYSLTRS 120 Query: 126 RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR 185 + + + M + A+ LLG +DF SF + R + +++ Sbjct: 121 PKPLPWQRYFAYYPRHSIKIDLMQKGAKYLLGTHDFASFANHGRDYTSTERTLFKLDIID 180 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 + V + K N F++ MVRNIVGSL+++ P +I E+LA K R A + L Sbjct: 181 NEEIVTIICKGNGFLYKMVRNIVGSLLDISKEKYPPEYIQEILAQKSRRKGPPAAPSHAL 240 Query: 246 YLVAVDYPDRYD 257 L V YP Y+ Sbjct: 241 SLHHVCYPKPYN 252 >UniRef50_C0GLA2 Pseudouridylate synthase n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GLA2_9DELT Length = 247 Score = 284 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 89/244 (36%), Positives = 125/244 (51%), Gaps = 2/244 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++ L + YDG+ Y GWQ Q + ++Q +LEKALS++ + I V +GRTDAGVH GQV Sbjct: 4 RVRLTLAYDGTGYNGWQIQKDGLTIQGELEKALSRICSASIRVHGSGRTDAGVHALGQVA 63 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+ + W +NA LP I V FHARFSA A++Y Y ++ Sbjct: 64 HFDPPPKFLNVPWNRALNAVLPPGIRVLDFARTDRKFHARFSARAKQYSYTLWTQGAFFY 123 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR--HGP 188 + PLD E M A CL G +DF F + R V +I + Sbjct: 124 PQRRNFVWNTGPLDLEAMQEATTCLTGSHDFNCFMNKGTEITDTIRTVRNILLAPGFTPQ 183 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 VV I+A+ F+ M RNIV +L++VG ++ + ++ +DR LA ATA A GL L Sbjct: 184 ETVVWIQADGFLKQMARNIVSALVQVGRKKLSQAELKSIIQGRDRALAPATAPARGLCLE 243 Query: 249 AVDY 252 V Y Sbjct: 244 HVTY 247 >UniRef50_B0N4B2 Pseudouridylate synthase n=4 Tax=Bacteria RepID=B0N4B2_9FIRM Length = 245 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 137/246 (55%), Gaps = 2/246 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + ++ + YDGSK++G+Q QN++R+VQ +++KAL + E I + +GRTDA VHGT Q Sbjct: 1 MVRVKCSVSYDGSKFHGFQVQNKLRTVQGEIQKALKNICKEEIIIHGSGRTDAKVHGTKQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V HF+TT +A W +N LP DI + V ++FH+R+SA + Y Y++ Sbjct: 61 VFHFDTTREMPEAQWKRAINHFLPNDIYILDSYFVDENFHSRYSAIKKEYHYLLSTKEYS 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 P + + + PLD E M AA+ +GE+DF SF + Q R + +++T Sbjct: 121 P-FETNYIFQYGRPLDLELMREAAKIFIGEHDFASFCSYD-QYGNTIRELYELSITNEKG 178 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + + N F +MVR+IVG L++VGA + + ELL +K AK +GLYL Sbjct: 179 IIKFILVGNGFRRYMVRHIVGGLIQVGAKRVTKERLQELLDSKGEQKCLFKAKPQGLYLH 238 Query: 249 AVDYPD 254 V Y + Sbjct: 239 EVFYDE 244 >UniRef50_B2IEW0 tRNA pseudouridine synthase A n=2 Tax=Alphaproteobacteria RepID=TRUA_BEII9 Length = 260 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 96/248 (38%), Positives = 133/248 (53%), Gaps = 1/248 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + L +EYDG+ + GWQRQ SVQE +E AL + P+ + AGRTDAGVH + QV Sbjct: 3 RYKLTVEYDGASFVGWQRQKNGLSVQEVIETALLAINGAPVGIRGAGRTDAGVHASAQVA 62 Query: 71 HFETTALRKDAAWTLGVNANL-PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 H + + +NA++ P +AV + VP+ F ARFSA R Y Y I N R Sbjct: 63 HADLAREWRPDVLRDALNAHMRPALVAVVAAEPVPETFDARFSAIRRHYLYRIINRRAPL 122 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 + LDA MH AAQ L G +DF++FRA +CQ+ +P R + ++V G Sbjct: 123 TFEAGRAWLVKRRLDARAMHEAAQVLTGRHDFSTFRAAECQAASPIRTLERLDVQAVGDL 182 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 + + A +F+HH VR++VGSL VG+ + L A DR A A GLYL Sbjct: 183 IEIRASARSFLHHQVRSMVGSLEMVGSGKWSAGDLRAALEACDRRRCGMVAPAAGLYLTG 242 Query: 250 VDYPDRYD 257 VDYP+ + Sbjct: 243 VDYPEEGE 250 >UniRef50_Q03PY8 tRNA pseudouridine synthase A n=21 Tax=Lactobacillales RepID=TRUA_LACBA Length = 265 Score = 283 bits (726), Expect = 3e-75, Method: Composition-based stats. Identities = 85/267 (31%), Positives = 136/267 (50%), Gaps = 10/267 (3%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEP---ITVFCAGRTDAGVHG 65 + + + + YDG+ + G+QRQ R+V+ L ++++A +P I ++ +GRTDAGVH Sbjct: 1 MQRYKVTLMYDGTNFAGFQRQPNKRTVESTLTDVVNKMAKQPDPAIVIYGSGRTDAGVHA 60 Query: 66 TGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 QVVHF+ L G+N+ LP D+ V V+ V FHAR+ + ++Y+Y + Sbjct: 61 LAQVVHFDFPFLIPADNMRKGLNSMLPMDMEVLKVEEVAPTFHARYDVSGKQYQYRMDMG 120 Query: 126 RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMH--INV 183 R H+ P+D +++ A L+GE+D+TSF A Q+RT R + ++ Sbjct: 121 EFRNPFKRNYTGHWKFPVDLAKINVALADLVGEHDYTSFVASGAQTRTFVRTIYEATCHI 180 Query: 184 TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 +V + N F+++ VR +VG L+E+G+ +P + L KDR A T A Sbjct: 181 DEANHELVFEFYGNGFMYNQVRIMVGVLVEIGSGTRPVHDVLRLYEVKDRKQARRTVPAA 240 Query: 244 GLYLVAVDYPDRYDLPKPPMGPLFLAD 270 GLYL V Y P P L Sbjct: 241 GLYLKHVYYQGE-----DPQHPTKLPQ 262 >UniRef50_Q73KE3 tRNA pseudouridine synthase A n=1 Tax=Treponema denticola RepID=TRUA_TREDE Length = 268 Score = 283 bits (726), Expect = 3e-75, Method: Composition-based stats. Identities = 90/260 (34%), Positives = 133/260 (51%), Gaps = 8/260 (3%) Query: 10 YKIALGIEYDGSKYYGWQRQNEV-----RSVQEKLEKALSQVANEPITVFCAGRTDAGVH 64 I L I YDG+ + GWQ+Q + R+VQ +LEKAL+++ PI +GRTD+GVH Sbjct: 8 KNILLTISYDGTNFCGWQKQTKEGAETFRTVQGELEKALTKIHKHPIETNGSGRTDSGVH 67 Query: 65 GTGQVVHFETT-ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIY 123 Q V+F + + + +N+ LP DI V V HARF+A +R YRY I Sbjct: 68 AARQAVNFFCDIKSMRASNFLPALNSILPKDIRVMDAAEVSPLLHARFNALSRTYRYKIK 127 Query: 124 NHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV 183 + A H D ++ A CL GE D T+F A QS + R + Sbjct: 128 CGKTIFAHEQPYTWHIRRYPDIAALNEMASCLSGELDCTAFSAAGDQSISKSRYIKKAVF 187 Query: 184 TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 Y++ +I ANAF+ MVR+IVG+L+ + + ++L +K R A TA + Sbjct: 188 FIENDYLIFEICANAFLWKMVRSIVGTLLHLDEIGASKKDFKDILESKMREKAGPTAPPQ 247 Query: 244 GLYLVAVDYPDRYDLPKPPM 263 GL+L +++YP+ DL K P Sbjct: 248 GLFLWSIEYPE--DLLKAPP 265 >UniRef50_Q3A9U9 Pseudouridylate synthase n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3A9U9_CARHZ Length = 246 Score = 283 bits (725), Expect = 4e-75, Method: Composition-based stats. Identities = 81/243 (33%), Positives = 124/243 (51%), Gaps = 3/243 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVR-SVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 L I YDG+ + G+Q+Q ++Q LE+ L ++ EP+ V AGRTDAGVH GQV Sbjct: 6 NFKLTIAYDGTNFAGFQKQKNTPQTIQGILEEKLHKILKEPVKVIGAGRTDAGVHALGQV 65 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 V+F +N LP I V + VPDDFHAR+SA + YRY +Y Sbjct: 66 VNFSAPWKAPVDKIPEILNNTLPTAIRVLEAEIVPDDFHARYSARKKEYRYYLYYGP-PS 124 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 + + LD E++ +A + L+G +DF+ F A + P + + + G Sbjct: 125 PFYERYAWALPQKLDREKVAKALEYLIGTHDFSGFGAAGSSGKNPIKTMFEASYREDGFL 184 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 A++F++ M R + G+L+E+G + + E+L ++ LA TA A GL+LV Sbjct: 185 GYFTFVADSFLYKMARILTGTLVEIGLNGH-PERVREILTTGNKKLAGKTAPAHGLFLVK 243 Query: 250 VDY 252 V Y Sbjct: 244 VFY 246 >UniRef50_C6LCX6 Pseudouridylate synthase n=2 Tax=Lachnospiraceae RepID=C6LCX6_9FIRM Length = 280 Score = 283 bits (725), Expect = 4e-75, Method: Composition-based stats. Identities = 85/277 (30%), Positives = 125/277 (45%), Gaps = 33/277 (11%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVR-SVQEKLEKALSQV--------------------- 46 L + YDG++Y+GW+ + + ++Q KLE L+++ Sbjct: 2 KQNFKLTVTYDGTRYHGWEAKPGIEMTIQGKLEAVLTKMLAFPDDVPVQSLIAPAASVVS 61 Query: 47 -----------ANEPITVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDI 95 P+ V AGRTDAGVH + +N LP DI Sbjct: 62 CNPGAADGMPGCPVPVKVIGAGRTDAGVHAREMTANVHLDTAMLPGDIRDYLNRYLPEDI 121 Query: 96 AVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCL 155 VR V V D FH+R++AT + YRY + L+P K V + D M +AA L Sbjct: 122 CVREVCIVSDRFHSRYNATGKTYRYTCFTGPLKPVFDRKYVYVLDKTPDIAAMKKAAGYL 181 Query: 156 LGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVG 215 G +DF SF ++ R + I +T++ Y+ N F+ HMVR + G+L+E G Sbjct: 182 CGTHDFASFCGNPKMKKSTVRTIDSIEITQNNSYLYFMYHGNGFLQHMVRILTGTLLETG 241 Query: 216 AHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 + + ELLAA+ R LA A A+GL L+ VDY Sbjct: 242 YGRRSPESMPELLAARKRALAGFLAPAQGLCLMKVDY 278 >UniRef50_A5FAV0 Pseudouridylate synthase n=14 Tax=Bacteroidetes RepID=A5FAV0_FLAJ1 Length = 284 Score = 283 bits (724), Expect = 5e-75, Method: Composition-based stats. Identities = 88/251 (35%), Positives = 121/251 (48%), Gaps = 5/251 (1%) Query: 6 QPPVY---KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAG 62 P+Y + + Y+G+ Y+GWQ Q SVQE L KALS + N I V AGRTD G Sbjct: 34 SKPLYLTMRYFIHFAYNGTHYHGWQFQPNASSVQETLNKALSVLLNSTINVMGAGRTDTG 93 Query: 63 VHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYII 122 VH HF+ +N+ LP DIAV + V DD H RF AT R Y Y I Sbjct: 94 VHAEEMYGHFDLEKSIDIPVLVHKLNSYLPKDIAVYNLIPVHDDAHCRFDATKRTYEYHI 153 Query: 123 YNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHIN 182 ++ L + + + LD E M+ AA+ LL DF F V T + Sbjct: 154 NT--VKNPFLEELSWYVTQKLDVELMNEAAKILLKHTDFQCFSKVNTDVNTFDCTIFEAY 211 Query: 183 VTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 + +V I AN F+ +MVR IVG+L+ +G H + ++A+K+R A + A Sbjct: 212 WKQENNKLVFTISANRFLRNMVRAIVGTLINIGLHKITLADFENIIASKNREKAGFSVPA 271 Query: 243 EGLYLVAVDYP 253 GLYL + Y Sbjct: 272 HGLYLTKIYYD 282 >UniRef50_D1BP31 Pseudouridylate synthase n=3 Tax=Veillonella RepID=D1BP31_VEIPT Length = 261 Score = 282 bits (723), Expect = 7e-75, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 130/249 (52%), Gaps = 2/249 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVR--SVQEKLEKALSQVANEPITVFCAGRTDAGVHGT 66 + I + + YDG+ G+Q+Q + +VQ LE LS++ NEPI ++ A RTDAGVH Sbjct: 1 MRNIQIIVAYDGTDLAGYQKQPNDKGLTVQGCLEYGLSRICNEPIQIYGASRTDAGVHAK 60 Query: 67 GQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 QV F+T+ + A++P DI V +P D+ R++ + Y Y I+N Sbjct: 61 FQVCTFQTSGTIPVENIPRAMIAHIPKDIVVIEAIEIPLDWKPRWNIYGKEYVYTIHNQL 120 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 + + + H +PLD +RM A L+G +DFT+ + P + +M I V Sbjct: 121 IADPLTQRYHWHVKKPLDIDRMQAAGNELVGTHDFTTLKGTNSTPADPVKTIMGIRVEAR 180 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G V + + + F++HMVRNI G L++VG + I LAAKDR + TA A+GL Sbjct: 181 GSQVTISVVGDGFLYHMVRNIAGLLVDVGLGRRKVEDIKGYLAAKDRRVIGKTAPAQGLC 240 Query: 247 LVAVDYPDR 255 L + + + Sbjct: 241 LEEIFFTEE 249 >UniRef50_C4GC36 Pseudouridylate synthase n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GC36_9FIRM Length = 325 Score = 282 bits (723), Expect = 7e-75, Method: Composition-based stats. Identities = 95/299 (31%), Positives = 131/299 (43%), Gaps = 54/299 (18%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN------------EPITVFCA 56 + L I YDG++Y GW+ Q ++Q KLE+AL+++ P+ + A Sbjct: 27 MQNYRLKIAYDGTRYAGWEHQPGQETIQGKLEQALARMCGLAMDERDFMRPDTPVKLIGA 86 Query: 57 GRTDAGVHGTGQV--VHFETTALRK----------------------------------- 79 GRTDAGVH G V + FE A R Sbjct: 87 GRTDAGVHARGMVASIAFEAPAYRPGPWERRESKGRDRGNQPGNMTWQAEPSAQLTRRNQ 146 Query: 80 -----DAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSK 134 +N LP DI+V K FHAR+ A + Y+Y ++ R++P + Sbjct: 147 PRSMTCQEMQDYLNHYLPDDISVVAFKEAAARFHARYKAVGKTYQYTAFDGRVKPVFNRR 206 Query: 135 GVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDI 194 T E LD M AA CLLGE+DF SF ++ R V I + R YV Sbjct: 207 YYTPLEEELDVSAMQEAANCLLGEHDFRSFCGNPKMKKSTVRRVDRIEIRRSKGYVYFSF 266 Query: 195 KANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYP 253 F+ +MVR +VG+LMEVG H + ++L A+DR A TA A GL L+ VDY Sbjct: 267 HGTGFLQNMVRILVGTLMEVGWHRMRPQDVEKILEARDRKAAGPTAPARGLCLIRVDYD 325 >UniRef50_Q04BY4 tRNA pseudouridine synthase A n=79 Tax=Firmicutes RepID=TRUA_LACDB Length = 262 Score = 282 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 87/248 (35%), Positives = 134/248 (54%), Gaps = 4/248 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVA-NEPITVFCAGRTDAGVHGTGQV 69 + L + YDG ++G+Q Q R++Q +E+ L Q+ + + VF +GRTDAGVH GQV Sbjct: 4 RYKLTLSYDGHDFHGFQSQPGQRTIQGTVEEILKQMTKGQEVRVFGSGRTDAGVHSVGQV 63 Query: 70 VHFETTAL-RKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 +HF+ A +N+ LP D+ + V DFH+RFS + YRY + Sbjct: 64 IHFDYPGREIPAANMIKALNSQLPMDMVFTDCEIVDKDFHSRFSVKGKWYRYRVSLDGFV 123 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT--RH 186 H+ P+D E+M AA+ LLG +DFTSF A Q R++ ++NV Sbjct: 124 NPFKRFYTGHYPYPVDVEKMQEAAKDLLGRHDFTSFAASGGQIEDKVRDMYYVNVALDEE 183 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 V++D A F+++MVR +V +L+E+G +P + ++AAK+R TA+A GLY Sbjct: 184 NNEVIMDFIATGFLYNMVRILVATLLEIGNGRRPVHDLKRVIAAKNRLEVQQTAQACGLY 243 Query: 247 LVAVDYPD 254 L V Y + Sbjct: 244 LYHVFYEE 251 >UniRef50_B5ZN21 tRNA pseudouridine synthase A n=21 Tax=Alphaproteobacteria RepID=TRUA_RHILW Length = 268 Score = 281 bits (720), Expect = 1e-74, Method: Composition-based stats. Identities = 88/247 (35%), Positives = 133/247 (53%), Gaps = 3/247 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + + +EYDG Y GWQRQ SVQ +E A+ + E +++ AGRTD+GVH GQV+ Sbjct: 3 RFRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSIRGAGRTDSGVHAMGQVI 62 Query: 71 HFETTALRKDAAWTLGVNANLP---GDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 H + + +NA+L +++ V+ V + F ARFSA R Y Y I + R Sbjct: 63 HADLSKAWSPYQLQNALNAHLRLAGERVSILDVEAVAEFFDARFSALRRHYLYRIVSRRA 122 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 A+ + + LD E MH AAQ L+G +DF++FRA CQ+ +P R + ++VTR G Sbjct: 123 PLALEAGKAWWVPKVLDHEVMHAAAQRLVGRHDFSTFRAAHCQANSPVRTLDRLDVTRSG 182 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + + A +F+H+ +R+ G+L G + L A+DR A +GLY Sbjct: 183 ELIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGLYF 242 Query: 248 VAVDYPD 254 + VDYPD Sbjct: 243 LQVDYPD 249 >UniRef50_B5CS63 Pseudouridylate synthase n=6 Tax=Clostridiales RepID=B5CS63_9FIRM Length = 264 Score = 280 bits (718), Expect = 3e-74, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 122/248 (49%), Gaps = 2/248 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVR-SVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + L I YDG+ Y GWQRQ ++Q LE +S+ A + V +GRTDAGVH G Sbjct: 13 MRTYRLVIAYDGTAYQGWQRQANTEMTIQGILESCISKAAGYAVEVNGSGRTDAGVHARG 72 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 Q +D +T VN LP DI +R + FHAR SA +RY Y I Sbjct: 73 QTASVVLHGKAEDGFFTEKVNKLLPPDIRIREAGLEKNGFHARKSAVGKRYVYQIDTDEK 132 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + HF + LD M +AA+ L G ++F ++ + ++ + R + I V G Sbjct: 133 PDVFDRRYTYHFPKKLDIAAMQQAAELLTGTHEFAAYTDKKDET-STKRTIYAIMVGGQG 191 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + + + F++HMVR + G+L+EVG + + L AKDRT A A GL+L Sbjct: 192 GRINIQYEGTGFLYHMVRILTGTLLEVGMGTRRIESVTIALEAKDRTKVGFLAPARGLFL 251 Query: 248 VAVDYPDR 255 V Y ++ Sbjct: 252 DEVYYKEK 259 >UniRef50_C0QZT8 tRNA pseudouridine synthase A n=2 Tax=Brachyspira RepID=TRUA_BRAHW Length = 249 Score = 280 bits (718), Expect = 3e-74, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 141/247 (57%), Gaps = 2/247 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 I + I+YDG+ +YGWQ Q +R+VQ ++ KA+ +V E IT++ GRTDAGVH GQV Sbjct: 3 NIKITIQYDGTDFYGWQIQPNLRTVQGEIYKAVQKVYGEKITIYGCGRTDAGVHALGQVA 62 Query: 71 HFETTALRKDAAWTL-GVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 +F + +N+ L D+ + + +PD F+AR SAT R Y YI++N Sbjct: 63 NFRVPKMLVPINKVHIALNSYLDRDLRIIKAEEMPDSFNARASATFREYLYIVHNSSTSF 122 Query: 130 AVLSKGVTHFYEP-LDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + + + +D + ++ A+ L+GE++FTSF + + ++ + +R + + R G Sbjct: 123 PFYERYAWFYRKNVIDEKLINEYARYLIGEHNFTSFCSTEDENDSKFRYLERVKAIRKGD 182 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + I+ NAF+H+MVR IVG+L+E +P ++I ++L ++DR A TA A GLY Sbjct: 183 TIYFIIRGNAFLHNMVRIIVGTLVEGQKKKKPINFIEDILKSEDRAKAFVTAPAHGLYFR 242 Query: 249 AVDYPDR 255 + D Sbjct: 243 RAFFKDE 249 >UniRef50_Q11XU3 Pseudouridylate synthase n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11XU3_CYTH3 Length = 248 Score = 280 bits (716), Expect = 4e-74, Method: Composition-based stats. Identities = 90/245 (36%), Positives = 128/245 (52%), Gaps = 3/245 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + L I Y G+ Y+GWQ Q +VQ L+KALS V I + +GRTD GVH + Q+V Sbjct: 2 RYFLDISYRGANYHGWQIQENAVTVQGVLQKALSNVLGAKIDILGSGRTDTGVHASSQIV 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 H ++ DAA +N LP DI ++ + V DD HARF A +R Y Y I ++ Sbjct: 62 HLDSPKEI-DAALIFRINGYLPKDICIKSARLVQDDAHARFDALSRAYVYRITL--VKNP 118 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 +FY P++ +RM++AA LL DF SF V + H R+G + Sbjct: 119 FEIGLAYYFYPPIEIDRMNKAAAILLQYEDFESFSKVHTDVTNFNCTIFHAYWERNGDML 178 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 +KAN F+ MVR +VG+++EVG +++ AKDR A +A E LYL V Sbjct: 179 YFHVKANRFLRGMVRTLVGTMLEVGKGRMSLDDFVQIILAKDRKRAGISAPPEALYLSEV 238 Query: 251 DYPDR 255 +YP Sbjct: 239 EYPAE 243 >UniRef50_A8S765 Pseudouridylate synthase n=4 Tax=Ruminococcaceae RepID=A8S765_9FIRM Length = 254 Score = 279 bits (715), Expect = 5e-74, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 128/250 (51%), Gaps = 3/250 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 L + YDG+ Y G+Q Q RSV + AL V + RTDAGVH G + Sbjct: 2 NFLLTLAYDGTNYCGFQVQPNGRSVAATFQDALEAVLGSRPDIKGCSRTDAGVHALGFRL 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 +F L +N +LP DI V +TVP+DFHAR++A + Y Y I+NH + Sbjct: 62 NFHADTRIPPQKLPLALNQHLPPDIRVLAAQTVPEDFHARYAAHTKTYLYRIHNHPIDSP 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDF---TSFRAVQCQSRTPWRNVMHINVTRHG 187 + T LD M AAQ +G +DF + + R + +VTR G Sbjct: 122 FDAAYYTRVPRRLDEAAMQAAAQQFVGTHDFLALCAAGSSAAAHGDTVRTITDCHVTRRG 181 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 V +++ A+ ++++MVR + G+L EVGA + I +LA++DR+ A T A+GL+L Sbjct: 182 DEVDIEVTADGYLYNMVRILAGTLCEVGAGRLRAADIPAILASRDRSRAGPTLPAKGLFL 241 Query: 248 VAVDYPDRYD 257 VDYP+R + Sbjct: 242 KCVDYPERKE 251 >UniRef50_D1XYC0 Pseudouridylate synthase n=2 Tax=Prevotella RepID=D1XYC0_9BACT Length = 255 Score = 279 bits (714), Expect = 7e-74, Method: Composition-based stats. Identities = 82/257 (31%), Positives = 118/257 (45%), Gaps = 15/257 (5%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + + + YDGSKY+GWQ Q SVQE LEKA+S + EPI + AGRTDAGVH Sbjct: 1 MQRYFITLSYDGSKYHGWQIQPNGSSVQETLEKAISVLLREPIAIIGAGRTDAGVHARMM 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V HF+ T +N LP DI+V ++ V +D HARFSA+ R Y Y ++ + Sbjct: 61 VAHFDFTGSVDCHQMVYRLNRLLPHDISVSKIEPVTNDLHARFSASRRTYHYYLHTQK-- 118 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT---- 184 + + LD + M+ AAQ L+G DF F +T + Sbjct: 119 NIYQRQYSCYMSYALDFDLMNEAAQYLIGTKDFKCFCKAGADVKTTICELTEARWVPIRA 178 Query: 185 ---------RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTL 235 I AN F+ +MVR +VG+L++VG ++ R+ Sbjct: 179 ELSMPLSSKEQPTDWCFIISANRFLRNMVRAVVGTLVDVGRGKLSLEAFKAIVDGGTRSD 238 Query: 236 AAATAKAEGLYLVAVDY 252 A + L+L V Y Sbjct: 239 AGESMPGNALFLWEVIY 255 >UniRef50_B5YGE4 tRNA pseudouridine synthase A n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=TRUA_THEYD Length = 254 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 76/255 (29%), Positives = 119/255 (46%), Gaps = 12/255 (4%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I + I+YDG+ Y+GWQRQ + R++Q +E+ L ++ I + AGRTDAGVH GQ Sbjct: 1 MVNIKMTIQYDGTNYFGWQRQRKGRTIQATIEECLRKIFQREIKIRGAGRTDAGVHALGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V F+ +N+ LP DI + ++ V D FH + S + Y Y + Sbjct: 61 VATFKAELKMSLDILKKVLNSLLPNDIKIIKLENVEDSFHPQHSVKRKSYIYYLCFDEEC 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHI------- 181 + + V H+ LD M A G DFT+F + R V Sbjct: 121 SCFIQRYVWHYPWKLDLSLMEEALSLFTGTKDFTAFSGS-TDVKNKIRTVHDFTMQLLTK 179 Query: 182 ----NVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAA 237 ++ +G ++ I+A+ F+ +MVRN+VG ++E+G I E + R Sbjct: 180 LCFMDMCLNGNFIKFRIEADGFLRYMVRNLVGCIIEIGKGKLRIESIQEAFESGKRPSTM 239 Query: 238 ATAKAEGLYLVAVDY 252 TA + GL+L V Y Sbjct: 240 QTAPSNGLFLEKVIY 254 >UniRef50_Q6MQH6 tRNA pseudouridine synthase A n=1 Tax=Bdellovibrio bacteriovorus RepID=TRUA_BDEBA Length = 262 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 93/254 (36%), Positives = 134/254 (52%), Gaps = 6/254 (2%) Query: 10 YKIALGIEYDGSKYYGWQRQN--EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 K+ + YDG+ + GWQ+Q + SV + +E+ALS+V NE IT+F +GRTDAGVH Sbjct: 3 TKVRFTVAYDGTGFCGWQKQKPEDQISVAQVIEEALSKVFNEKITLFASGRTDAGVHALN 62 Query: 68 QVVHFETTALRKDAA---WTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYN 124 QV HF T +N++LP I + PDDFHA SAT + YRY+I N Sbjct: 63 QVCHFSTHRKIDPNKKWDLCWALNSHLPPSIVAKKAWIAPDDFHATLSATHKTYRYLIVN 122 Query: 125 HRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT 184 A L++ P+D E + +++ LLG DF SF++V R + + Sbjct: 123 KPRPSAHLNRYADWVRLPIDIEHLQESSKYLLGNQDFKSFQSVGTPVPDTVREIYKADWE 182 Query: 185 RHGPYVV-VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 P V+ I + F+ MVRNIVG+ + + S + E++AA+DR A A A+ Sbjct: 183 WRKPGVMQFTITGSGFLKQMVRNIVGTSLFLERKGLDPSKMQEIIAAQDRMKAGPPAPAQ 242 Query: 244 GLYLVAVDYPDRYD 257 GLYL+ V YP D Sbjct: 243 GLYLMKVYYPQDLD 256 >UniRef50_Q88XU9 tRNA pseudouridine synthase A n=6 Tax=Lactobacillales RepID=TRUA_LACPL Length = 262 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 84/250 (33%), Positives = 127/250 (50%), Gaps = 5/250 (2%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN---EPITVFCAGRTDAGVHGT 66 + + + YDG+ + G+QRQ R+V++ + KA++++A EPI ++ AGRTDAGVH Sbjct: 3 TRYKVVLAYDGTNFAGFQRQPHQRTVEQVVTKAVNKMAKDPVEPIVIYGAGRTDAGVHAF 62 Query: 67 GQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 GQ +HF+ G+N+ LP D V+ V VP+DFHAR+ +RY Y Y + Sbjct: 63 GQTLHFDLPYEINPEGVRRGLNSMLPMDTIVKAVSIVPNDFHARYDTVGKRYWYRAYQNE 122 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT-- 184 HF D +R+ +A L G +DF++F A Q+ R + Sbjct: 123 FVDPFKRHYTGHFKFAADIDRIQQAIGDLEGRHDFSTFVASGSQAHDHVREIYSAKAWAL 182 Query: 185 RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 + + + F+++ VR +V LME+G + I LLAAKDR A TA A G Sbjct: 183 PDEREIQFEFCGSGFLYNQVRIMVAVLMEIGQGRRAVDCIPALLAAKDREQARGTAPAAG 242 Query: 245 LYLVAVDYPD 254 LY+ V Y Sbjct: 243 LYMKKVYYEQ 252 >UniRef50_D0RR37 Pseudouridylate synthase n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RR37_9RICK Length = 245 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 135/245 (55%), Gaps = 1/245 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 +++ +EY+G+ + GWQ Q +VQ+ +EK+ ++ +F +GRTD+GVH TGQ Sbjct: 1 MHRYKAVVEYNGTDFEGWQSQPSGNTVQQIIEKSFLEIQLNKTKIFGSGRTDSGVHATGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPG-DIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 V HF+ LG+N L +I+V + ++F +R A R Y Y I N Sbjct: 61 VFHFDYEDKLDCKKILLGLNHFLKKKNISVLSLDFTNNNFDSRRDAKLRTYTYKILNRIA 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 P +L V H + LD + M +A+Q LG +DFT+FRA C++ +P R +++ + ++ Sbjct: 121 SPVILENQVWHVIKNLDFKLMQKASQIFLGSHDFTTFRASSCEATSPIREIIYSELKKNN 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 ++ +K+ +F+ H VR++VG++ VG + E L +K+R A A A GLYL Sbjct: 181 DQIIYIVKSRSFLQHQVRSMVGAIKFVGEKKWSLKDLDEALKSKNRNNCATPAPACGLYL 240 Query: 248 VAVDY 252 V+Y Sbjct: 241 ENVEY 245 >UniRef50_C5CGS8 tRNA pseudouridine synthase A n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=TRUA_KOSOT Length = 250 Score = 277 bits (710), Expect = 2e-73, Method: Composition-based stats. Identities = 90/248 (36%), Positives = 130/248 (52%), Gaps = 3/248 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + A + YDGS ++G+Q Q R+VQ E+AL ++ I AGRTD GVH GQ Sbjct: 1 MKRFAAVVVYDGSNFFGYQIQPNKRTVQGVFEEALERIHKAKIPTDGAGRTDTGVHAYGQ 60 Query: 69 VVHFETTALR-KDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 V+ F + R +NANLP DI VR + VP +F RF+A R Y Y I N + Sbjct: 61 VIAFTSNLDRLTPKHMKDALNANLPDDIYVRRIHEVPSNFSPRFAAKKRIYHYYILNTKE 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR-H 186 K F +D RM +A++ L+GE+DFTSFR R+ R + I + R Sbjct: 121 PDLFRRKYFWWFPYEVDLNRMRQASRYLIGEHDFTSFRT-GHDDRSTIRTITGIRILRLQ 179 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 +++ ++ +F+ MVRNIVG LM VG E+L A+DR+ ++A A GL Sbjct: 180 KNIILIRVEGISFLRRMVRNIVGLLMRVGTGGIEPKKTKEILEARDRSKLPSSAPAHGLV 239 Query: 247 LVAVDYPD 254 L V + + Sbjct: 240 LHKVIFDE 247 >UniRef50_A6LDA7 tRNA pseudouridine synthase A n=46 Tax=Bacteria RepID=TRUA_PARD8 Length = 252 Score = 277 bits (708), Expect = 3e-73, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 125/248 (50%), Gaps = 3/248 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + + + Y+G + GWQ Q +VQ+ +E+AL+ + P+ + AGRTDAGVH Sbjct: 1 MRRYFIYLGYNGKNFRGWQIQPNGMTVQQSIEEALAILMRTPVPIVGAGRTDAGVHAHLM 60 Query: 69 VVHFETTALRKDAAWT-LGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 + HF+ D + +N LP DIAV + V + HARF AT+R Y+Y + + Sbjct: 61 IAHFDWEEPIGDLVFLAEKLNRLLPKDIAVYKIVPVVPEAHARFDATSRTYKYYVTTKK- 119 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + V LD E M+ A + L DFTSF + +T ++ H T+ G Sbjct: 120 -DPFNHELVYKLPGRLDFEAMNEACKVLFDYIDFTSFSKLHTDVKTNNCHIQHAGWTQEG 178 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 V I+A+ F+ +MVR IVG+L+EVG ++ AKDR A + L+L Sbjct: 179 DIWVFTIRADRFLRNMVRAIVGTLLEVGRGRLTIDGFRNVIEAKDRCKAGTSVPGHALFL 238 Query: 248 VAVDYPDR 255 V V YP+ Sbjct: 239 VDVTYPEE 246 >UniRef50_D1N376 Pseudouridylate synthase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N376_9BACT Length = 272 Score = 277 bits (708), Expect = 3e-73, Method: Composition-based stats. Identities = 82/261 (31%), Positives = 130/261 (49%), Gaps = 7/261 (2%) Query: 1 MSDQQQP--PVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVA-NEPITVFCAG 57 MS ++ P P + L I YDG+ Y GWQ Q +VQ+++++ L+++ +PI + + Sbjct: 1 MSIEETPYEPYKRYLLEIAYDGTNYSGWQIQPHRVAVQQRVQEILTKMYNGQPIHLIGSS 60 Query: 58 RTDAGVHGTGQVVHFETTAL--RKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATA 115 RTDAGVH + T VN LPGDI +R V+ VP +FHAR+ A Sbjct: 61 RTDAGVHAQRFAASYLTPVRPDIPTDKILRAVNRQLPGDIKLRTVREVPLEFHARYDALG 120 Query: 116 RRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPW 175 + Y Y++ N + +D E++ A+Q L G +D++SF + Sbjct: 121 KAYTYVL-NLGDPSPFTDRYTWRPIHRMDVEKIRAASQVLTGTHDYSSFVVERSLIDEAV 179 Query: 176 RNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTL 235 R + I+V G + V N F++ M+R ++G+L GA + +L A DRT+ Sbjct: 180 RTIYRIDVQEFGQFCCVTFVGNGFLYKMIRCLMGTLEAAGAGKLSPEAVRRILEACDRTV 239 Query: 236 AAATAKAEGLYLVAVDY-PDR 255 A TA GL+L+ V Y P+ Sbjct: 240 APETAPPNGLFLMKVFYTPEE 260 >UniRef50_B7A9H2 Pseudouridylate synthase n=2 Tax=Thermaceae RepID=B7A9H2_THEAQ Length = 259 Score = 276 bits (707), Expect = 4e-73, Method: Composition-based stats. Identities = 88/262 (33%), Positives = 124/262 (47%), Gaps = 10/262 (3%) Query: 9 VYKIALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + +I L EYDG+ + G QRQ +R+VQ +LEKAL + P AGRTDAGVH Sbjct: 1 MRRILLLTEYDGTHFAGLQRQRQGLRTVQGELEKALPHIGALP-KAVAAGRTDAGVHALA 59 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 H + + +N LP D+ V + V DFHAR A R YRY + Sbjct: 60 MPFHIDLQSPIPPEKVPEALNRLLPEDLKVVAAREVAPDFHARKDALWRAYRYRVLLRPH 119 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT--- 184 +L V PLD + M A LLG ++F F + ++R R ++ + Sbjct: 120 PSPLLRHRVLWLRRPLDLKAMEEALPLLLGRHNFLGF--AKEETREGVRELLEARLEVLE 177 Query: 185 -RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 GP V K +F+ VR +VG+L+EVG + + +L DR LA +A A Sbjct: 178 GEMGPEVRFYFKGRSFLRGQVRGMVGTLLEVGLGRRSPESVKAILETADRRLAGQSAPAT 237 Query: 244 GLYLVAVDYPDRYDLPKPPMGP 265 GLY + YP+ + KPP P Sbjct: 238 GLYFLEAAYPE--EKLKPPAHP 257 >UniRef50_C8X4C1 Pseudouridylate synthase n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X4C1_DESRD Length = 254 Score = 275 bits (705), Expect = 7e-73, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 119/246 (48%), Gaps = 2/246 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++ L + Y G+ + GWQ Q R+VQ LE A + + P+ V AGRTD+GVH GQV Sbjct: 3 RLKLVVAYTGTHFAGWQLQPRDRTVQGCLEDAFATLCQHPLRVHGAGRTDSGVHAVGQVC 62 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 H + + W +NA LP DIAV V DDFHARFSA A+ Y Y I+ Sbjct: 63 HCDIPPEKNHIPWQKALNAILPKDIAVCEAAYVRDDFHARFSAQAKEYAYTIWTEPRYVL 122 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHI--NVTRHGP 188 + + +D +M AA+ L G DF +F+ R V H+ G Sbjct: 123 PQRRPLVWSVGRVDEHKMAVAARMLTGTFDFAAFQNTGTPVSHTVRTVYHLAPEPGAAGN 182 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 A+ F+ MVRNI+G L+ VG + + LL + R +A ATA +GL L Sbjct: 183 ESTWLFHADGFLKQMVRNIMGCLVAVGRNKISVDEVKILLEGQKREMAPATAPPQGLCLR 242 Query: 249 AVDYPD 254 V Y + Sbjct: 243 KVKYGE 248 >UniRef50_B5YDX5 tRNA pseudouridine synthase A n=2 Tax=Dictyoglomus RepID=TRUA_DICT6 Length = 245 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 82/244 (33%), Positives = 127/244 (52%), Gaps = 3/244 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + + Y G ++G+Q+Q R+VQ +LEK L + +E I V AGRTDAGVH GQVV Sbjct: 3 NWKVELSYIGKDFWGFQKQPGKRTVQGELEKVLKLLFDEDIKVIGAGRTDAGVHALGQVV 62 Query: 71 HFET--TALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 +F+T + +N LPGDI ++ V+ V D+FHAR+SA R Y Y+IYN+ + Sbjct: 63 NFKTKESKNFSCDKLYKVLNKLLPGDIKIKKVEIVDDNFHARYSAKRRWYIYVIYNNEEK 122 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 L +PLD + ++ +A G +DF +F ++ T + Sbjct: 123 NLFLRDYCWWINKPLDKDLLNLSANLFKGIHDFRNFCVIENYDNTNV-EIYESFWYFKED 181 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 ++ + A F+ MVR IVGS++EVG + + + L + ++ A A GLYL Sbjct: 182 LLIYFVSAPFFLRKMVRFIVGSMVEVGLKKKELEDLEKYLKDRKEERFSSPAPASGLYLF 241 Query: 249 AVDY 252 +DY Sbjct: 242 KIDY 245 >UniRef50_A1A6J3 Pseudouridylate synthase n=14 Tax=Magnoliophyta RepID=A1A6J3_ARATH Length = 323 Score = 275 bits (703), Expect = 1e-72, Method: Composition-based stats. Identities = 85/257 (33%), Positives = 132/257 (51%), Gaps = 10/257 (3%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVA---NEPITVFCAGRTDAGVHGT 66 YK L I YDG+++ GWQ Q ++Q LEKAL Q+ + + + AGRTDAGVH Sbjct: 41 YKWRLVIAYDGTRFAGWQYQESPPTIQSMLEKALIQITELGRKELQLIGAGRTDAGVHAW 100 Query: 67 GQVVHFETTAL-RKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 GQV HF T ++ +N LP DI VR + +FHARFSA+++ YRY IYN Sbjct: 101 GQVAHFVTPFNYTSLDSFHAALNGLLPKDIRVRELSAAVPEFHARFSASSKVYRYQIYND 160 Query: 126 RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAV--QCQSRTPWRNVMHINV 183 H L+A +M AA +G++DF++F + P + + +V Sbjct: 161 TFMDPFQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISRFDV 220 Query: 184 TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAA----T 239 + G + ++++ + F++ VRN+V L+++G + +L KDR + A Sbjct: 221 IQMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTSLP 280 Query: 240 AKAEGLYLVAVDYPDRY 256 A GL LV+V Y + + Sbjct: 281 ASPHGLCLVSVKYKEDH 297 >UniRef50_Q2JUJ7 Pseudouridylate synthase n=2 Tax=Synechococcus RepID=Q2JUJ7_SYNJA Length = 287 Score = 274 bits (701), Expect = 2e-72, Method: Composition-based stats. Identities = 94/262 (35%), Positives = 128/262 (48%), Gaps = 3/262 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 +IAL I+Y GS + GWQRQ R+VQ LE+A++ A P+ ++ AGRTD GVH +GQ Sbjct: 3 SRRIALKIQYLGSGFRGWQRQAGHRTVQGVLEEAIALRAGHPVALYGAGRTDTGVHASGQ 62 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V HF+TT+ W +N LP D+ V VPD +HARFSA RRYRY+I N L Sbjct: 63 VAHFDTTSGIPPTEWARVLNDCLPEDVVVLASAQVPDFWHARFSARWRRYRYLILNRELP 122 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 PL E M A LLGE+ +FR V + R G Sbjct: 123 DVFWRLFSWQVRWPLQVEPMAEALNSLLGEHSLEAFRRRGSDRPHSRVQVQEVLCQRLGD 182 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKD--RTLAAATAKAEGLY 246 + ++++A+ F++ M+R +VGSL VG L D R +A +GL Sbjct: 183 LISIEVQASGFLYRMMRLLVGSLEVVGRGEISPQQFVHLWQHNDWSRMRTRYSAPPQGLC 242 Query: 247 LVAVDY-PDRYDLPKPPMGPLF 267 LV V Y D + P + Sbjct: 243 LVDVGYAGDPFGRRFAHSPPFW 264 >UniRef50_Q6MDE3 tRNA pseudouridine synthase A 2 n=2 Tax=Parachlamydiaceae RepID=TRUA2_PARUW Length = 262 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 127/248 (51%), Gaps = 4/248 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I L I YDG Y+GWQ+ SV++ L+ +L Q+ I++ A RTD GVH GQ Sbjct: 15 MQNIKLKIAYDGQAYFGWQKTPAGPSVEKTLQNSLEQILQHTISLQAASRTDKGVHARGQ 74 Query: 69 VVHFETTALRKD-AAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 +V+F TT D + L +N+ LP D+ + + +P FH + A+ Y Y I + Sbjct: 75 IVNFLTTKSITDLQKFILSLNSLLPTDLRILSAEKMPSTFHPTLNCVAKEYCYYICYDFV 134 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQS--RTPWRNVMHINVT- 184 + H PL +M +A L+GE+DF++F + R V I++ Sbjct: 135 QLPEYRPYSWHCPFPLMLGKMTQAISVLIGEHDFSAFCNFKKNVNYTDYIRRVQAIHLEV 194 Query: 185 RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 + + + IK N F++ MVRNIVG+L+ +G I +L ++DR +A TA A G Sbjct: 195 LNHKRLCIRIKGNHFLYKMVRNIVGTLIYIGKGKLMVEDIPSILQSQDRKMAGVTAPAHG 254 Query: 245 LYLVAVDY 252 L+L V Y Sbjct: 255 LFLQTVLY 262 >UniRef50_Q5HBA4 tRNA pseudouridine synthase A n=13 Tax=Rickettsiales RepID=TRUA_EHRRW Length = 246 Score = 273 bits (700), Expect = 3e-72, Method: Composition-based stats. Identities = 99/244 (40%), Positives = 143/244 (58%), Gaps = 2/244 (0%) Query: 11 KIALGIEYDGSKYYGWQRQN-EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 + + IEYDGS + GWQ+QN S+QE LEKA+ + + + + V+ AGRTDAGVH GQV Sbjct: 2 RYKIVIEYDGSDFIGWQKQNHNSNSIQEILEKAIFKFSKQHVIVYGAGRTDAGVHALGQV 61 Query: 70 VHFETTALRKDAAWTLGVNANL-PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 HF+ T + +N +L IAV V+ DFHARFSA R Y Y I N Sbjct: 62 AHFDLTTDFETYIVRNAINYHLISHAIAVVHVEKTDTDFHARFSAKRRYYLYKIVNRYSP 121 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + + PL+ E M +A + G ++F+SFRA CQS++P + V ++++T + P Sbjct: 122 LTIDRNRAWLVHTPLNVENMIKAVCYIKGNHNFSSFRAKCCQSKSPIKTVDNLSITYNHP 181 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Y+ ++I A +F+HH VR IVG+L+E G P I ++ A +R+ A TA + GLY V Sbjct: 182 YIDINISAISFLHHQVRIIVGTLVECGKGYFPPEHIKTIMEANNRSYAGTTAPSYGLYFV 241 Query: 249 AVDY 252 VDY Sbjct: 242 KVDY 245 >UniRef50_Q72I65 tRNA pseudouridine synthase A n=2 Tax=Thermus thermophilus RepID=TRUA_THET2 Length = 253 Score = 273 bits (698), Expect = 5e-72, Method: Composition-based stats. Identities = 84/256 (32%), Positives = 118/256 (46%), Gaps = 8/256 (3%) Query: 9 VYKIALGIEYDGSKYYGWQRQN-EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + ++ L EYDG+ + G QRQ +R+VQ +LE+AL + P AGRTDAGVH Sbjct: 1 MRRLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGIGALP-KAVAAGRTDAGVHALA 59 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 H + + +N LP D+ V + V DFHAR A R YRY I Sbjct: 60 MPFHVDVESAIPVEKVPEALNRLLPEDLKVVGAREVAPDFHARKDALWRAYRYRILVRPH 119 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT--- 184 +L PLD E M A LLG ++F F + + R ++ + Sbjct: 120 PSPLLRHRALWVRRPLDLEAMEEALSLLLGRHNFLGFAKEETRPG--ERELLEARLQVAE 177 Query: 185 -RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 G V + + +F+ VR +VG+L+EVG +P + +L DR LA TA A Sbjct: 178 GEAGLEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPESLKAILKTADRRLAGPTAPAH 237 Query: 244 GLYLVAVDYPDRYDLP 259 GLY V YP+ P Sbjct: 238 GLYFVEAAYPEEKLSP 253 >UniRef50_B2A4Q5 tRNA pseudouridine synthase A n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=TRUA_NATTJ Length = 253 Score = 273 bits (698), Expect = 6e-72, Method: Composition-based stats. Identities = 86/251 (34%), Positives = 130/251 (51%), Gaps = 8/251 (3%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVA-NEPITVFCAGRTDAGVHGTGQV 69 I L I YDGS Y+G+Q Q +VQEKLEKAL+ V IT + A RTD+GVH GQV Sbjct: 3 NIKLTIAYDGSNYHGYQLQENAVTVQEKLEKALNTVYYPYKITPYSASRTDSGVHAKGQV 62 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 +F L +N NLP DIA+ + V +F AR A + YRY +Y+ Sbjct: 63 ANFFAPKQIPIHKIPLALNTNLPNDIAIINAEVVGSNFRARRDAIKKEYRYYVYHAPYMD 122 Query: 130 AVLSKGVTHFYE-PLDAERMHRAAQCLLGENDFTSFRAVQCQSRT--PWRNVMHINVT-- 184 H+ E LD ++ +AA +G++DF+ FRA+Q + + P + + ++ Sbjct: 123 PFWRNYALHYREQNLDYTKLQQAANDFIGKHDFSPFRAIQGSNPSIDPVKEIYEFDIDVN 182 Query: 185 --RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 G ++ + NAF++ MVR +VG+L+++G + + + L DR TA Sbjct: 183 AGEDGNLIIFKVIGNAFLYKMVRILVGTLLQIGNGKLEINAVKKALQTGDRLFVGPTASP 242 Query: 243 EGLYLVAVDYP 253 +GL L + YP Sbjct: 243 QGLVLQQIWYP 253 >UniRef50_C2MC62 Pseudouridylate synthase n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MC62_9PORP Length = 262 Score = 272 bits (697), Expect = 7e-72, Method: Composition-based stats. Identities = 93/255 (36%), Positives = 130/255 (50%), Gaps = 8/255 (3%) Query: 6 QPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHG 65 + P+ ++ L + YDG+ Y GWQ Q SVQ +LE+ALS + +PI+V AGRTDAGVH Sbjct: 2 EAPIQRVFLEVAYDGTNYCGWQVQPRGVSVQSELERALSMLFRQPISVTGAGRTDAGVHA 61 Query: 66 TGQVVHFETTALRKDAA-WTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYN 124 + H + A G+ L G I+VR V V HARF AT+RRY Y I Sbjct: 62 YSMMAHADLPIPHPPLAQIQRGLCGILRGGISVRSVTPVIPTAHARFDATSRRYHYYI-- 119 Query: 125 HRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT 184 D E M+ A + +GE+DFTSF + Q++ V + Sbjct: 120 SACSNPFWGDYCWERRTLPDMELMNEACRHFIGEHDFTSFSKLHTQTKHNRCTVYTAHWE 179 Query: 185 RHG-----PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAAT 239 + + ++ AN F+H MVR +VG+L+EVG + IAEL+ +DRTLA + Sbjct: 180 QVEMPGLWDAMRYEVCANRFLHGMVRTMVGTLLEVGYGQRTPDSIAELIQREDRTLAGSA 239 Query: 240 AKAEGLYLVAVDYPD 254 A A L+ V YPD Sbjct: 240 APARALFFVEATYPD 254 >UniRef50_D0WG96 Pseudouridylate synthase n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WG96_9ACTN Length = 331 Score = 272 bits (697), Expect = 7e-72, Method: Composition-based stats. Identities = 104/258 (40%), Positives = 142/258 (55%), Gaps = 17/258 (6%) Query: 12 IALGIEYDGSKYYGWQRQN--EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 +ALG+ YDG+ + G+ RQ V +VQ +LE+ LS + + CAGRTDAGVH GQV Sbjct: 74 VALGVAYDGAPFAGFARQAESHVTTVQGELERVLSVLYRRAVDTVCAGRTDAGVHALGQV 133 Query: 70 VHFETT----ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 V F+ T A R +NA + I V + P F ARF AT+R YRY I Sbjct: 134 VSFDLTEEEFASRPLRTLMKSMNALVDERITVTCAEERPAGFSARFDATSREYRYFIATG 193 Query: 126 RLRPAVLSKGVTHFYE-PLDAERMHRAAQCLLGENDFTSFRAVQC------QSRTPWRNV 178 RP ++++ V H PLD + M+ AA+ L+GE+DF SF + R+ R V Sbjct: 194 NARPVLIARSVWHLRGAPLDVDAMNTAARFLVGEHDFKSFCVASSALHLEGEGRSTCRRV 253 Query: 179 MHINVTRHG----PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRT 234 + +V P V V I NAF+H M+R IVG+L+ VG + SW+A++LAA+DRT Sbjct: 254 IEADVRSTHVMGTPVVEVRIVGNAFLHSMIRIIVGTLVAVGQGRRDASWVADVLAARDRT 313 Query: 235 LAAATAKAEGLYLVAVDY 252 A TA A GL +V Y Sbjct: 314 AAGETAPACGLTFWSVRY 331 >UniRef50_B9Y957 Pseudouridylate synthase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y957_9FIRM Length = 268 Score = 272 bits (696), Expect = 8e-72, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 123/247 (49%), Gaps = 4/247 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVR--SVQEKLEKALSQVANEPITVFCAGRTDAGVHGT 66 + + + YDG Y GWQ Q R ++Q+ ++ A+S + +P+++ +GRTDA VH Sbjct: 2 MQRFKAVVSYDGFDYAGWQIQPAERGATIQQTIQDAISVICQQPVSITGSGRTDAQVHAW 61 Query: 67 GQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 GQV HF+ W +N +LP DI +R V+ V FHARF A +RY Y I Sbjct: 62 GQVFHFDVDFSLNAFQWKRAINGHLPKDIHIRSVEAVDSRFHARFDAIGKRYEYRIQLGE 121 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRA-VQCQSRTPWRNVMHINVTR 185 + L+ + M A L+GE+DF+SF A + + R + + + Sbjct: 122 A-NVFTRRYAFQSPWTLNVQAMREGAAYLIGEHDFSSFCANSRAEMPDQARTITRLELAE 180 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 + + + + F+ +MVR + G+L+EVG + +L A+D+ + AK +GL Sbjct: 181 ENDQLRLIYEGSGFLRYMVRMMTGTLIEVGRGRLAPQDVQWMLQAQDKQICHFNAKPQGL 240 Query: 246 YLVAVDY 252 LV V Y Sbjct: 241 TLVEVYY 247 >UniRef50_Q1GE00 tRNA pseudouridine synthase A n=2 Tax=Ruegeria RepID=TRUA_SILST Length = 259 Score = 272 bits (696), Expect = 9e-72, Method: Composition-based stats. Identities = 90/250 (36%), Positives = 125/250 (50%), Gaps = 5/250 (2%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + AL +EY G + GWQRQ + SVQ +E AL+++ T+ AGRTD GVHG GQV Sbjct: 3 RFALKVEYHGKPFAGWQRQKDQPSVQGAIEAALARIEPGEHTIAAAGRTDTGVHGLGQVA 62 Query: 71 HFETTALRKDAAWTLGVNANL-PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 H + + +N +L P +A+ V D++HARFSA R+Y + I R Sbjct: 63 HCDLEKNWDPFRLSEALNYHLKPAPVAIVDAALVDDEWHARFSAVERQYLFRILMRRAPA 122 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR---- 185 V LD M A LLG +DFT+FR+ CQ+ +P + + + V R Sbjct: 123 THDEGQVWQIKHDLDVAAMQAGANMLLGNHDFTTFRSSICQAASPVKTLDELRVERVQGL 182 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 GP V ++A +F+H+ VR+ VG+L VG + L AKDR GL Sbjct: 183 SGPEVHFHVRARSFLHNQVRSFVGTLERVGTGAWSPEDVKHALEAKDRAACGPVCPGHGL 242 Query: 246 YLVAVDYPDR 255 YL V YPD Sbjct: 243 YLARVGYPDP 252 >UniRef50_B9KZV8 Pseudouridylate synthase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KZV8_THERP Length = 279 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 98/267 (36%), Positives = 128/267 (47%), Gaps = 14/267 (5%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + L Y+G+ + G QRQ +R+VQ LE+AL+++A EP+ V AGRTDAGVH GQ Sbjct: 3 RQRYRLDFGYEGTAFSGSQRQPGLRTVQGVLEEALARLAGEPVRVALAGRTDAGVHAVGQ 62 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V F+ +A + A LP D+ V V +P FHAR A R YRY I+ Sbjct: 63 VASFDLCWRHDEATLARALQAWLPEDVVVYRVARMPAGFHARRGAVDREYRYRIWQGEQP 122 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAV---QCQSRTP-WRNVMHINVT 184 P L + V F LD M AAQ LG +DF SF ++ TP R + Sbjct: 123 PLFLRRFVWRFAGLLDLRAMQEAAQFFLGSHDFRSFAGHGLGGPKATTPRVRTITMAEWH 182 Query: 185 RHGP----------YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRT 234 P V ++AN F+ MVR +V +L+ VG SWI+ELL DR Sbjct: 183 LLSPVVEPVGTGAQIVEFRVRANGFLPQMVRTMVSALVRVGTGAAEPSWISELLERCDRR 242 Query: 235 LAAATAKAEGLYLVAVDYPDRYDLPKP 261 A A GL L V YP+ L P Sbjct: 243 AAPPPAPPGGLVLWRVRYPEDIALATP 269 >UniRef50_D1B5U1 Pseudouridylate synthase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B5U1_THEAS Length = 251 Score = 272 bits (695), Expect = 1e-71, Method: Composition-based stats. Identities = 86/245 (35%), Positives = 125/245 (51%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 +++ A + Y GS + G+QRQ + +VQ LE++LS +A E +T AGRTDAGVH GQ Sbjct: 1 MFRYAAQVSYVGSCFAGFQRQPNLVTVQGALEESLSALAGEGVTCTGAGRTDAGVHARGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 VVHF+ + L + A LP + V + VP DFHARF A R YRY+++N R Sbjct: 61 VVHFDMPSRWDLERLRLAIRARLPRGLEVIRLAEVPGDFHARFDARWREYRYLVWNARWC 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + V LD + A LG DF +F + R +M +V R G Sbjct: 121 YPHMEPYVWPVRRHLDLGVLRELAGMCLGRRDFGAFCRSADRPDDSVRTMMRCSVRRFGH 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 +V +A+ F+ +M+R +VG+++EV A A LL R+ A T +GL+ Sbjct: 181 LLVFTFRADGFLTNMIRILVGTMLEVEAGRMSRERFASLLEGGHRSRAGRTCPPQGLFFW 240 Query: 249 AVDYP 253 V Y Sbjct: 241 RVGYD 245 >UniRef50_Q3Z951 Pseudouridylate synthase n=5 Tax=Dehalococcoides RepID=Q3Z951_DEHE1 Length = 248 Score = 272 bits (695), Expect = 1e-71, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 130/246 (52%), Gaps = 1/246 (0%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 + L IEY+G++Y G+Q Q++ ++Q +LE A+ ++ +E V +GRTDAGVH QVV Sbjct: 1 MLLVIEYEGTRYSGFQVQDKGATIQGELETAIRKLTSEQTRVSGSGRTDAGVHAAYQVVS 60 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 + + + G+N LP DIAV+ V V + F R A +R Y Y I N + R + Sbjct: 61 YLSESSLGLDKIKGGLNFYLPPDIAVKEVHFVAESFDVRRRAISREYSYQILNSKTRSPL 120 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSF-RAVQCQSRTPWRNVMHINVTRHGPYV 190 LD + M +A + L GE+DF +F ++ + + R V + + Sbjct: 121 ARLQAWQVPYKLDIKLMEQAFKMLEGEHDFIAFASSLGPEIKKTVRRVNWTRLGIREDRL 180 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + +I+AN+F+ H VRN +G+L+E+G S L AK LA A A GL LV V Sbjct: 181 IFNIEANSFLTHQVRNTIGTLVELGRGTMSMSEFEALFEAKTPGLAGPAAPACGLSLVRV 240 Query: 251 DYPDRY 256 +Y + + Sbjct: 241 NYREPF 246 >UniRef50_UPI0001BC54DA tRNA pseudouridine synthase A n=2 Tax=Fusobacterium RepID=UPI0001BC54DA Length = 251 Score = 272 bits (695), Expect = 1e-71, Method: Composition-based stats. Identities = 73/248 (29%), Positives = 123/248 (49%), Gaps = 7/248 (2%) Query: 11 KIALGIEYDGSKYYGWQRQNE---VRSVQEKLEKALSQVAN---EPITVFCAGRTDAGVH 64 + IEY+G++Y GWQR E +++Q K+E+ L+++ E ++V +GRTDAGVH Sbjct: 5 NLRFSIEYEGTRYLGWQRLGEKQREKTIQGKIEQVLARLFALNPEEVSVIASGRTDAGVH 64 Query: 65 GTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYN 124 Q+ + + + N LP DI + V + FH+RF A + Y Y I Sbjct: 65 AKEQIANVHLPSGKSPQEIEEYCNQYLPEDIRIFHAHFVEELFHSRFHAKTKEYHYEISL 124 Query: 125 HRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT 184 + + LD E+M ++Q LGE+DF +F +++ ++ R + I + Sbjct: 125 QK-PSVFHRNVTWYCPMQLDIEKMKESSQYFLGEHDFIAFSSLKKTKKSTIRRIDRIEIQ 183 Query: 185 RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 ++ N F+ +M+R +VG+L+EVG + + I + +K R A A A+G Sbjct: 184 ETESGLLFRFVGNGFLQNMIRILVGTLIEVGEGKKTKEDIISIFQSKTRQKAGFLAPAKG 243 Query: 245 LYLVAVDY 252 L L V Y Sbjct: 244 LTLYKVYY 251 >UniRef50_A6GZH6 Pseudouridylate synthase n=2 Tax=Bacteroidetes RepID=A6GZH6_FLAPJ Length = 250 Score = 270 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 119/243 (48%), Gaps = 2/243 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + + Y+G++Y+GWQ Q SVQE L K S + E I + AGRTDAGVH Sbjct: 2 RYFIEFAYNGTQYHGWQYQPNATSVQETLNKVFSTLLQEKIDIMGAGRTDAGVHAKQMYG 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+T +A + N+ LP DI + + V + HARF AT+R Y Y I ++ Sbjct: 62 HFDTDISIDNAKFIHKANSFLPKDIVIFNIIPVHNQAHARFDATSRTYNYHISTYK--NV 119 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + + + +D M+ AA+ LL DF F T + + + Sbjct: 120 FTNNLAWYSSKKIDVIAMNEAAKVLLKFTDFKCFSKTNTDVNTYNCKITEAFWSIEKEQL 179 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + I A+ F+ +MVR IVG+L+ +G H +++ +++R A + A GL+L + Sbjct: 180 IFTITADRFLRNMVRAIVGTLINIGLHKITIENFIQIIESQNRENAGFSVPAHGLFLTNI 239 Query: 251 DYP 253 +YP Sbjct: 240 EYP 242 >UniRef50_A5KLX7 Pseudouridylate synthase n=3 Tax=Clostridiales RepID=A5KLX7_9FIRM Length = 260 Score = 270 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 82/261 (31%), Positives = 118/261 (45%), Gaps = 17/261 (6%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEV-RSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + L I YDG+ Y GWQRQ++ R++Q LE+ L + + +GRTDAGVH +G Sbjct: 1 MRTYKLTIAYDGTNYQGWQRQSDTDRTIQGILEETLENCIGYQVQIDGSGRTDAGVHASG 60 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 Q A +T +N LP DI + V+ V + FHAR SA + Y Y I Sbjct: 61 QTASVVLPGKVDTALFTEKMNGCLPPDIRILDVELVKNGFHARKSAVGKVYEYRIDTGIK 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH- 186 + K HF D RM AA L G + F + + +R+ R + I + Sbjct: 121 QDVFTRKYSGHFPGEPDLARMREAAGYLTGTH-FFAEYTDKKDNRSVRRTIYSIMIRDER 179 Query: 187 --------------GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKD 232 G +V+ F++HMVR + G+L+EVG + + E L D Sbjct: 180 KDFLPCGKSDQIGNGNCIVIRYDGTGFLYHMVRILTGTLLEVGMRERTAESVKEALLTGD 239 Query: 233 RTLAAATAKAEGLYLVAVDYP 253 R+ A A A GL+L V Y Sbjct: 240 RSKAGFLAPAGGLFLREVRYE 260 >UniRef50_Q7TU31 tRNA pseudouridine synthase A n=7 Tax=Prochlorococcus marinus RepID=TRUA_PROMP Length = 268 Score = 270 bits (691), Expect = 4e-71, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 132/247 (53%), Gaps = 1/247 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + ++AL I+YDGS + GWQRQ SVQE +E L +++N+ I F +GRTDAGVH +GQ Sbjct: 1 MKRVALVIQYDGSYFSGWQRQKNAISVQETIENCLFKISNQIIKTFASGRTDAGVHASGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V+HF+ L + +N+ LP I + V +HA +SA R YRY+I N+++ Sbjct: 61 VIHFDIDFLIPIDRYADVLNSRLPHTIRILESVEVKSSWHACYSAVYRHYRYVINNNKIP 120 Query: 129 PAVLSKGVTHFYEP-LDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 L+K H Y+ LD M A ++GE+DF +F+ T + I + R Sbjct: 121 NLFLNKWSWHRYQKYLDEVSMSIALDGMIGEHDFFAFQKSGSNRSTSVTTIKDIKLERTE 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 +++DIKA F++ MVR+IVG L+ VG + K + +A A+GL Sbjct: 181 DLILIDIKATGFLYGMVRSIVGQLVLVGEKKITPDIFKDRWVLKKKHDVRESAPAKGLCF 240 Query: 248 VAVDYPD 254 V Y + Sbjct: 241 VNSVYEE 247 >UniRef50_C4F9Q5 Pseudouridylate synthase n=3 Tax=Coriobacteriaceae RepID=C4F9Q5_9ACTN Length = 292 Score = 269 bits (689), Expect = 6e-71, Method: Composition-based stats. Identities = 94/253 (37%), Positives = 128/253 (50%), Gaps = 9/253 (3%) Query: 11 KIALGIEYDGSKYYGWQRQN-EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 + + YDG+ + G+ Q +R+V ++ +AL + P+ + CAGRTDAGVH Q Sbjct: 33 TLVFRLGYDGAAFSGFAEQPEGLRTVAGEVRRALETILRRPVDLTCAGRTDAGVHAVSQY 92 Query: 70 VHFETTAL---RKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 V A A W + A LP DIA+ V F ARF A +R Y Y I Sbjct: 93 VSIPAHADELAITHARWMRAMAALLPSDIALNAVYHARPGFSARFDARSRTYTYRIVTGD 152 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQ-SRTPWRNVMHINVTR 185 RP + PLD + M RAA CL+GE+DF SF + RNV+ ++ R Sbjct: 153 ARPLLTRSVTWWHRLPLDMDAMERAAACLVGEHDFKSFCKTSSAIDKPTCRNVIAVSFER 212 Query: 186 H----GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAK 241 ++ I NAF+H MVR IVGSL+EVGA + E W+++ LAA DR A TA Sbjct: 213 ASALGEEHIAFTITGNAFLHSMVRTIVGSLVEVGAGRRDERWLSDALAACDRRAAGPTAP 272 Query: 242 AEGLYLVAVDYPD 254 A GL + V Y + Sbjct: 273 ARGLCFMDVAYDE 285 >UniRef50_B5JG47 Pseudouridylate synthase n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JG47_9BACT Length = 243 Score = 269 bits (689), Expect = 6e-71, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 124/243 (51%), Gaps = 2/243 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + YDG+ Y GWQ+Q+ SVQ+ +E+ L Q+ E + + +GRTDAGVH QV Sbjct: 2 RWKCSCSYDGTNYAGWQKQSGQISVQQVIEEVLEQLLKEKVAIHGSGRTDAGVHALEQVF 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+ + +++ LP +I V V ++FHARFSA ++RY+Y + P Sbjct: 62 HFDYDWRHGGESLVKALHSKLPKEIRVESATEVGEEFHARFSAVSKRYQYRLALGEANP- 120 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQC-QSRTPWRNVMHINVTRHGPY 189 LD + A +G +DF +F A + + + R ++ V++ Y Sbjct: 121 FQWAYCWPVSRKLDLNLVKEAMDRFVGTHDFGAFAANRGIEYESTERKMLATGVSQDTEY 180 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 V + +A+ F++ MVR++VG+++ VG S I LL + R+ A A+GL+L Sbjct: 181 VGLSFQADGFMYKMVRSLVGAVVNVGLGRMQVSEIERLLESAVRSPMVQAAPAKGLFLEK 240 Query: 250 VDY 252 V Y Sbjct: 241 VFY 243 >UniRef50_C1TLE9 Pseudouridylate synthase n=3 Tax=Synergistaceae RepID=C1TLE9_9BACT Length = 247 Score = 269 bits (689), Expect = 6e-71, Method: Composition-based stats. Identities = 84/245 (34%), Positives = 122/245 (49%), Gaps = 1/245 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 K AL + Y+G+ + GWQ Q + +VQE LE+AL+ + P+ V AGRTD+GVH GQV Sbjct: 2 KYALELSYEGNHFSGWQLQPDSITVQEVLEEALTVLEGAPVKVSGAGRTDSGVHARGQVA 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 FE + TL VNANLP ++V VPDDF AR SA R Y Y +++ Sbjct: 62 SFELSKTWDPYRLTLAVNANLPEHVSVMRASAVPDDFDARRSALWREYAYFVWHGPSCFP 121 Query: 131 VLSKGVTHF-YEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 + V + D + + + L+GE+DF +F + R + + R G Sbjct: 122 HVRDMVWWRKRDDWDMDAVDGCCRALVGEHDFGAFCRLSECPENAVRTLFSVRHIRRGRL 181 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 + I+ F+ +MVR I+G++ V + W LL R +A TA A GL+ Sbjct: 182 SIFRIRGKGFLTNMVRIILGNIDAVATGKKRLEWFERLLLGGTRVDSATTAPASGLFFWR 241 Query: 250 VDYPD 254 V Y D Sbjct: 242 VGYDD 246 >UniRef50_B0SC03 tRNA pseudouridine synthase A n=2 Tax=Leptospira biflexa serovar Patoc RepID=TRUA_LEPBA Length = 264 Score = 269 bits (688), Expect = 8e-71, Method: Composition-based stats. Identities = 88/262 (33%), Positives = 135/262 (51%), Gaps = 8/262 (3%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANE--PITVFCAGRTDAGVHGTGQ 68 AL +EYDG+ + GWQ+Q + +VQ +E AL + + AGRTD GVH G Sbjct: 3 NYALLVEYDGTHFNGWQKQKNLPTVQSSIESALGIILRRNPASRLSVAGRTDTGVHALGM 62 Query: 69 VVHFETTALRKD-AAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 V +F+T + + +NA P ++V+ V VP DFHARFS T R Y Y +Y + Sbjct: 63 VCNFKTEHPIPNFHKLLVSLNALTPTGVSVKNVVEVPSDFHARFSCTGREYIYKLYYSKY 122 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQS-RTPWRNVMHINVTRH 186 + + +D ER+ + Q L+GE DF SF + + + R ++ I + Sbjct: 123 ESSFVEGRAFWVKGHIDWERVKKQLQVLVGEKDFRSFTKAKSMAGKRAVREILAIQLENL 182 Query: 187 GP-YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 P + + I+AN F+H+MVR VG+L+++G I +L K+RT A T +GL Sbjct: 183 SPEWYQIRIRANGFMHNMVRITVGTLLDIGKGRWESRSIDSILEEKNRTQAGVTLPPDGL 242 Query: 246 YLVAVDY---PDRYDLPKPPMG 264 Y V Y P+ ++L K P+ Sbjct: 243 YFVRAYYEDHPEIHELYKIPLP 264 >UniRef50_UPI00016BFD9D tRNA pseudouridine synthase A n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016BFD9D Length = 259 Score = 269 bits (688), Expect = 8e-71, Method: Composition-based stats. Identities = 75/252 (29%), Positives = 127/252 (50%), Gaps = 14/252 (5%) Query: 13 ALGIEYDGSKYYGWQRQNEVR-------SVQEKLEKALSQVANEPITVFCAGRTDAGVHG 65 + Y G++Y G+ RQ + ++ +LE A+ ++ + + + AGRTDAGVH Sbjct: 10 KFIVAYKGTRYNGFARQAGDKVVGSGIQTISAELELAIEKITQQQVRIVGAGRTDAGVHA 69 Query: 66 TGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 QV ++ L +N LP DI ++ ++ + FH FS + YRY I N Sbjct: 70 LAQVCIANIDTQIGNSGLLLALNNKLPVDIVIKSIEDAEEGFHPTFSGKRKMYRYQILNT 129 Query: 126 RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQC----QSRTPWRNVMHI 181 + +++ V HF LD E M AA L+G +DF +F A + + + R + I Sbjct: 130 TVSCPFVAEFVYHFPHKLDVEEMKVAAXELVGTHDFRAFCAAKSNVLKKGSSTVRTIFDI 189 Query: 182 NVTRHGPYVV-VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATA 240 V R ++ +D+ + F+++MVR I G+L++ G IA++L ++R A TA Sbjct: 190 VVARGDDEIIKIDVTGDGFLYNMVRIIAGTLIDKGLGRGMP--IAKILEMRERKNAGKTA 247 Query: 241 KAEGLYLVAVDY 252 A GL ++ V+Y Sbjct: 248 PASGLTMIGVEY 259 >UniRef50_C0QUR7 Pseudouridylate synthase n=4 Tax=Hydrogenothermaceae RepID=C0QUR7_PERMH Length = 244 Score = 269 bits (688), Expect = 9e-71, Method: Composition-based stats. Identities = 84/243 (34%), Positives = 123/243 (50%), Gaps = 3/243 (1%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 + L I Y G Y+GWQ+Q + R+VQ LE+ L + E I + +GRTDAGVH GQV Sbjct: 5 HNYKLVIMYIGKNYHGWQKQPKHRTVQGVLEEKLKVLFKEDIVLIGSGRTDAGVHALGQV 64 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 +F+T + RK +NA LP DI+V+ V+ VP FHARFSA + Y Y IY Sbjct: 65 ANFKTISYRKPEEIYRYLNATLPRDISVKSVEEVPLSFHARFSAKGKTYIYRIYTKP--D 122 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 L + + LD + M A + + D S R + +++T G Sbjct: 123 PFLHGFGWYISKKLDLKGMLEALEIVKKSKDLRSLSKKGEYLREDV-EIRELSMTYDGKI 181 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 + + I A+ F+ +MVR IVG ++++G + ++ AKD T A EGL+L Sbjct: 182 IEIQITASHFLRYMVRKIVGHVVQIGLGSLSIQEFENIIEAKDPTKGLFIAPPEGLFLKE 241 Query: 250 VDY 252 V Y Sbjct: 242 VYY 244 >UniRef50_Q28LN3 tRNA pseudouridine synthase A n=16 Tax=Rhodobacterales RepID=TRUA_JANSC Length = 261 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 89/250 (35%), Positives = 125/250 (50%), Gaps = 5/250 (2%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + A IEYDG + GWQRQ ++ SVQ +E AL+++ + T+ AGRTD GVH GQV Sbjct: 3 RYAFRIEYDGHPFKGWQRQTDLPSVQGAVEAALAKLEADVPTIAAAGRTDTGVHALGQVA 62 Query: 71 HFETTALRKDAAWTLGVNANL-PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 H + +N +L P +A+ DDFHARFSAT R Y Y + R Sbjct: 63 HADMQRDWDPFRLAEALNYHLKPAPVAITACARAHDDFHARFSATWRSYTYRMICRRAPL 122 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR---- 185 LD M A+ L+G++DFT+FRA CQ+ +P + + I V Sbjct: 123 VHARGHAWAVRGTLDVTAMAEGARHLIGKHDFTTFRATHCQALSPIKTMDEIRVEEVSLP 182 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 G + +KA +F+H+ VR+IVGSL VG+ + L A DR A +GL Sbjct: 183 AGTEIRFHLKAQSFLHNQVRSIVGSLEHVGSGAWAPDDMRRALEACDRAECGTVAPPDGL 242 Query: 246 YLVAVDYPDR 255 Y+ V Y + Sbjct: 243 YMTGVGYDED 252 >UniRef50_Q2LWJ8 Pseudouridylate synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LWJ8_SYNAS Length = 328 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 87/259 (33%), Positives = 123/259 (47%), Gaps = 4/259 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 K L +EYDG+ Y GWQ Q +S+Q L + + P+ + AGRTDAGVH QV Sbjct: 66 KYRLTLEYDGTGYSGWQMQKNAKSIQGTLLRVAEDLLGGPVDIQGAGRTDAGVHALAQVA 125 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 H ETT G+N LP I + V+ P FHAR SA R Y Y+I H R A Sbjct: 126 HLETTRRMPPRKLLEGLNDALPSSINILRVEEAPPLFHARHSAQLRSYLYVISGH--RTA 183 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWR-NVMHINVTRHGPY 189 + V + L+ ++M A++ G +DF+SF + + P R V + G Sbjct: 184 FGKRYVWWIRDHLELKKMQAASRLFAGFHDFSSFADKRMDKQAPTRVKVEATELHASGDL 243 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 + + + F+ MVR +VG ++EVG S + ++L + A TA GLYL Sbjct: 244 IFFRVTGSHFLWKMVRRMVGVMVEVGREKLDISDVRQMLKSYSPEPARLTAPPSGLYLER 303 Query: 250 VDYP-DRYDLPKPPMGPLF 267 V Y D P+ P F Sbjct: 304 VLYEGDSLQSLTLPLVPWF 322 >UniRef50_A4EA88 Pseudouridylate synthase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EA88_9ACTN Length = 274 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 91/251 (36%), Positives = 120/251 (47%), Gaps = 8/251 (3%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + + YDGS Y G+ Q +V +L +A+ + PI + CAGRTDAGVH Q + Sbjct: 16 TLVFRVAYDGSSYSGFAEQPGQATVAGELRRAIETLLRRPIDLTCAGRTDAGVHAVAQYI 75 Query: 71 HF---ETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 + W ++A LP DIA+ V F ARF A +R Y Y I + Sbjct: 76 SVPVTDAELALTRRRWLRAMDALLPKDIAINEVYRARKGFSARFDARSRTYTYRIADRDA 135 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQS-RTPWRNVMHINVTRH 186 RP + V PLD E M A LLGE DF SF V + R VM Sbjct: 136 RPVLSRGAVWWHRYPLDVEAMSAACPALLGEQDFKSFCKVASAVGKPTHRCVMRAEFGHE 195 Query: 187 ----GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 + I+ NAF+H MVR IVG+L+E+G H + W+ E++ A DRT A TA A Sbjct: 196 VAFGEDILTFTIEGNAFLHSMVRTIVGTLVEIGMHRRKPEWMREVIDACDRTAAGPTAPA 255 Query: 243 EGLYLVAVDYP 253 GL + VDY Sbjct: 256 CGLTFMGVDYD 266 >UniRef50_C8P3N2 Pseudouridylate synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3N2_ERYRH Length = 245 Score = 266 bits (681), Expect = 5e-70, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 121/243 (49%), Gaps = 2/243 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + ++YDGS + GWQ+Q R VQ ++E L+++ EPI + +GRTDAGVH GQV Sbjct: 3 RFKATVQYDGSMFKGWQKQPFGRCVQTEIESVLTRINKEPIHISGSGRTDAGVHALGQVF 62 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+ + +N LP DI + + V +FHARF ++ Y Y + N Sbjct: 63 HFDNVVDMDEKQLFRALNTLLPNDIVITDIHPVEPNFHARFDVVSKTYEYRL-NMGAYNL 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQ-CQSRTPWRNVMHINVTRHGPY 189 V + + LD + + A + +G +DFTSF A + R + + ++ + Sbjct: 122 FERNYVYQYNKALDLQAIRDAMESFVGTHDFTSFNATGLDEIENQVRTITNFDLIVSDDH 181 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 + I + F+ +MVR IV + + G+ IA++L A D+ + A GLYL Sbjct: 182 LNFVIIGDGFLRYMVRMIVATCVACGSGKCDAHEIAQMLKAADKNSISYNIDACGLYLKK 241 Query: 250 VDY 252 V+Y Sbjct: 242 VNY 244 >UniRef50_A4CM73 Pseudouridylate synthase n=2 Tax=Flavobacteriales RepID=A4CM73_9FLAO Length = 253 Score = 266 bits (681), Expect = 5e-70, Method: Composition-based stats. Identities = 84/245 (34%), Positives = 125/245 (51%), Gaps = 4/245 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQV-ANEPITVFCAGRTDAGVHGTGQV 69 + L I Y G+ Y+GWQ+Q ++QE LE + ++ N PI + AGRTDAGVH Sbjct: 2 RFFLEISYLGTAYHGWQKQPNALAIQEILEDRMGKLLGNGPIDLVGAGRTDAGVHARQLF 61 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 HF+ A + + +NA LP DIAV+ V V + HARF AT R Y Y + R + Sbjct: 62 AHFDRDAALP-SGFVHRLNAFLPADIAVKGVYEVAPNAHARFDATGRTYEYHLV--REKD 118 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 F LD M+RAA +LG +F +F + +T ++ Sbjct: 119 PFREGLAYQFQGELDFGAMNRAAASMLGYGNFKAFSRSKSDVKTYNCDLREARWEEGDGV 178 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 V I A+ F+ +MVR +VG+L+EVG + ++ ++DR+ A + A+GLYL Sbjct: 179 WVFTISADRFLRNMVRAVVGTLLEVGKGRLDAEGVKTIIKSQDRSEAGVSVPAKGLYLTR 238 Query: 250 VDYPD 254 + YPD Sbjct: 239 ITYPD 243 >UniRef50_C8W7W7 Pseudouridylate synthase n=4 Tax=Coriobacteriaceae RepID=C8W7W7_ATOPD Length = 294 Score = 266 bits (680), Expect = 7e-70, Method: Composition-based stats. Identities = 93/252 (36%), Positives = 132/252 (52%), Gaps = 8/252 (3%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + + + Y G+ + G+ Q RSV L +AL V + + CAGRTDAGVH Q V Sbjct: 37 TLVIKLGYRGAAFCGFAEQPTQRSVAGDLRRALETVLRREVELTCAGRTDAGVHAQVQYV 96 Query: 71 H---FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 ++ + A DI++R + P F ARF A AR YRY I Sbjct: 97 SLPVYDADLSFSGEKLVRSLTALTDDDISIRQLFRAPQGFSARFDAQARSYRYRICADSA 156 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRA-VQCQSRTPWRNVMHINVTRH 186 RP + V + LDA+ M +AAQ L+GE+DF SF + + + R V ++V Sbjct: 157 RPILGWDHVWWYNGHLDADLMDKAAQALVGEHDFKSFCKAISAEGKPTHRFVERLSVEEI 216 Query: 187 GPY----VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 + VDI NAF+H+MVR IVG+L+E+G ++P WI E+LAAK+R A + A A Sbjct: 217 EEAGEKLIAVDITGNAFLHNMVRTIVGTLVEIGRGHRPVEWIDEVLAAKNRIAAGSCAPA 276 Query: 243 EGLYLVAVDYPD 254 +GL V V YP+ Sbjct: 277 QGLTFVNVRYPE 288 >UniRef50_D1PV12 Pseudouridylate synthase n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PV12_9BACT Length = 244 Score = 265 bits (679), Expect = 8e-70, Method: Composition-based stats. Identities = 86/244 (35%), Positives = 124/244 (50%), Gaps = 3/244 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + + I +DG+ Y+GWQ Q SVQEKL++ L+ + +PI V AGRTDAGVH Sbjct: 2 RYFVWISFDGTAYHGWQIQPNGMSVQEKLQQGLTTLLRQPIEVTGAGRTDAGVHARRMAA 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+ +N LP DI+ V V D+ HARFSAT R YRY I+ R Sbjct: 62 HFDIDRELNCEQLAYRLNRILPRDISCEKVVRVNDEMHARFSATKRTYRYFIHTQ--RNP 119 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP-Y 189 LD E+M++AA LL +DF +F ++T V + GP Sbjct: 120 FERFFSVEMNWQLDFEQMNQAAAILLETDDFKAFCKAHADNKTTLCKVTTARWVQTGPAT 179 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 +I AN F+ +MVR +VG+L++VG HN +E++ R+ A + GL+L Sbjct: 180 YYFEISANRFLRNMVRAVVGTLIDVGRHNITLQQFSEIVEKGSRSDAGQSMPPHGLFLWD 239 Query: 250 VDYP 253 ++Y Sbjct: 240 IEYE 243 >UniRef50_A9B439 Pseudouridylate synthase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B439_HERA2 Length = 272 Score = 265 bits (679), Expect = 8e-70, Method: Composition-based stats. Identities = 92/262 (35%), Positives = 125/262 (47%), Gaps = 12/262 (4%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 +AL EY G+ + G Q Q R+VQ +LE A ++ +E AGRTDAGVH Q Sbjct: 2 SRTLALCFEYLGTAFCGSQWQPGGRAVQTELETAWQRLTSETGRWIFAGRTDAGVHALAQ 61 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V H + R +NA P DI+V +P FHARFSA R YRY+ + Sbjct: 62 VAHIVSDTPRSLDTIAKAINAITPPDISVHEAWEMPTGFHARFSARQRTYRYVFDSAPAP 121 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG- 187 A LS V LD M A L+G +DF +F + R M + Sbjct: 122 SATLSGRVLRLDHQLDWAAMQAALDTLIGTHDFAAFAGAG-HEGSTTRTCMLAQLRPAEW 180 Query: 188 ---PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 P V+ ++ANAF+ HMVRNIVG+L+ VG ++A++DR A TA +G Sbjct: 181 LGRPVTVLHLQANAFLKHMVRNIVGTLLMVGDGRLSLEAWQAIIASRDRRNAGPTAPPQG 240 Query: 245 LYLVAVDYPDRYDLPKPPMGPL 266 LYL ++ Y P + PL Sbjct: 241 LYLESIGYD-------PALQPL 255 >UniRef50_C0VZ39 Pseudouridylate synthase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VZ39_9ACTO Length = 302 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 96/265 (36%), Positives = 138/265 (52%), Gaps = 24/265 (9%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + L Y G+ + GW +Q +R+VQ LE+AL+ V EP+ + AGRTDAGVH + Q Sbjct: 2 RFRLECAYRGTFFRGWAKQPGLRTVQGTLEEALALVLREPVELTVAGRTDAGVHASAQTA 61 Query: 71 HFETTALR------------KDAAWTLGVNAN----------LPGDIAVRWVKTVPDDFH 108 HF+ A R A T +N LP D+ V ++ V D F Sbjct: 62 HFDVCADRLMQVTKQAEVVHACEALTRRLNRLIRRADSNASGLP-DVVVYSIEPVADVFD 120 Query: 109 ARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQ 168 ARF+A R Y Y + + R + ++ V EPL M AA+ L+GE+DF SF + Sbjct: 121 ARFAALRRHYVYRVADVAGRNPLYAESVWWVEEPLQIHLMREAARALVGEHDFLSFCKPR 180 Query: 169 CQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELL 228 + + R + +++ + V + A+AF H MVR+IVG+L+EVG +P +WIA+L+ Sbjct: 181 -EGASTIRTLEAVDLVETDTGLEVRLSADAFCHSMVRSIVGALVEVGRGRKPVTWIADLV 239 Query: 229 AAKDRTLAAATAKAEGLYLVAVDYP 253 A R AA A GL L AVDYP Sbjct: 240 AFPSREQAAPLAPPHGLTLRAVDYP 264 >UniRef50_Q2JFE6 tRNA pseudouridine synthase A n=44 Tax=Actinomycetales RepID=TRUA_FRASC Length = 274 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 93/253 (36%), Positives = 131/253 (51%), Gaps = 4/253 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEP-ITVFCAGRTDAGVHGTGQV 69 ++ L + YDG+ + GW RQ R+VQ +E AL +VA P + + AGRTD+GVH GQV Sbjct: 7 RLRLDLSYDGTPFAGWARQPGQRTVQGDVEDALMRVARLPAVRLTVAGRTDSGVHAVGQV 66 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 H + +N L + + + P F ARFSA +RRY Y I + Sbjct: 67 AHVDLPDDVPLGGLARRLNGVLDRAVRIIGLAPAPPGFDARFSALSRRYVYRITDAPYGA 126 Query: 130 AVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 L + T + PLD M AA L+GE+DF +F + + T R ++ ++V R Sbjct: 127 EPLRRFDTLAWPRPLDVPAMAAAALFLVGEHDFAAFCRRR-EGATTVRTLLRLDVLRRPE 185 Query: 189 YVVV-DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 VVV D++A+AF H MVR +VG+L+ VG +P W A +L R A A A GL L Sbjct: 186 GVVVADVEADAFCHSMVRALVGALLAVGEGRKPPQWPAAVLHRGVRDPAVTVAPAHGLTL 245 Query: 248 VAVDYPDRYDLPK 260 V V YP +L Sbjct: 246 VDVRYPPDPELAA 258 >UniRef50_Q30XU3 tRNA pseudouridine synthase A n=5 Tax=Desulfovibrionales RepID=TRUA_DESDG Length = 278 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 90/274 (32%), Positives = 126/274 (45%), Gaps = 25/274 (9%) Query: 11 KIALGIEYDGSKYYGWQRQ---------NEVRSVQEKLEKALSQVANEPITVFCAGRTDA 61 ++ L I Y G++Y GWQ Q + +VQ+ +E A + + V AGRTD+ Sbjct: 3 RLKLIIAYAGTRYAGWQIQCLPAGRPHAVQQPTVQQAVEDAAKAILGSAVRVHGAGRTDS 62 Query: 62 GVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYI 121 GVH GQV H + + W +NA LP DI+V VPD FHARF A +RY Y Sbjct: 63 GVHAEGQVAHLDIPDAKAAVDWRRALNAKLPEDISVLQAAVVPDGFHARFDAVKKRYTYR 122 Query: 122 IYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHI 181 I+ R + H PLD M AA + G +DF SF+ + T R V I Sbjct: 123 IWLTRAFVLPQRRPFVHMTGPLDIAAMDAAAAFMTGTHDFASFQNAGTELATTVRTVYSI 182 Query: 182 ---------NVTRHGP-------YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIA 225 + R + +A+ F+ MVRN++G L+ G + Sbjct: 183 TRTPGLAPDDFPRSHDTTPRAPLELAWHFEADGFLKQMVRNMMGLLLWTGTGRCAPEDVP 242 Query: 226 ELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDLP 259 ++AA+DR L+A TA A GL + V YPD P Sbjct: 243 AIIAARDRRLSAPTAPACGLTMERVFYPDECCPP 276 >UniRef50_B7AQ15 Pseudouridylate synthase n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AQ15_9BACE Length = 256 Score = 264 bits (675), Expect = 2e-69, Method: Composition-based stats. Identities = 73/252 (28%), Positives = 119/252 (47%), Gaps = 10/252 (3%) Query: 11 KIALGIEYDGSKYYGWQRQNEV-RSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 L I+YDGS+Y GWQR N+ ++++ L A+ + E + +GRTDAGVH Q Sbjct: 3 NYRLTIQYDGSRYNGWQRLNDTDNTIEQILTDAIIKSTGEKTKLIGSGRTDAGVHALAQT 62 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 +F + +T +N+ LP DI V K VP DFH+R SAT + Y Y I Sbjct: 63 ANFRCRQRLDEMHFTEELNSMLPEDIRVNLTKRVPPDFHSRHSATGKYYVYRIEISEPAN 122 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 + D + M AAQ ++GE+DF +F + V IN+ + Sbjct: 123 PFRRRYSWKPDGIPDVKLMCEAAQRMIGEHDFKAFCTDAKLMPYTVKTVYDINIHKDYSC 182 Query: 190 ---------VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATA 240 + ++ + F+++MVR + G++++ G + I +L R+++ A Sbjct: 183 LWNREEPGIIELEFHGSGFLYNMVRIMAGTIVDAGLGRFSPADIDAMLNGGTRSMSGQLA 242 Query: 241 KAEGLYLVAVDY 252 A GL+L +Y Sbjct: 243 PARGLFLKKAEY 254 >UniRef50_Q72DL8 tRNA pseudouridine synthase A n=4 Tax=Desulfovibrio vulgaris RepID=TRUA_DESVH Length = 297 Score = 264 bits (675), Expect = 2e-69, Method: Composition-based stats. Identities = 90/287 (31%), Positives = 125/287 (43%), Gaps = 44/287 (15%) Query: 11 KIALGIEYDGSKYYGWQRQNEV-----RSVQEKLEKALSQVANEPITVFCAGRTDAGVHG 65 ++ L I Y G+ +GWQ Q R+VQ LE +S++A E + + AGRTDAGVH Sbjct: 3 RLRLTIAYKGTDLHGWQVQEHATRPRPRTVQGVLEPIVSRMAGEQVRLHAAGRTDAGVHA 62 Query: 66 TGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 GQV H + + W +NA LP DI + V+ DDFHARF A +RY Y ++ Sbjct: 63 DGQVAHVDIPDHKLGVDWQKAINAQLPDDICILDVRRAADDFHARFDALGKRYTYRLWLT 122 Query: 126 RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHIN--- 182 R G PLD M RAA+ L G +DF +F+ + R V I Sbjct: 123 RRFIPPKLHGQVWATGPLDVYAMDRAARHLAGTHDFAAFQNQGTDVTSTVRTVHAIRRCP 182 Query: 183 ------------------------------------VTRHGPYVVVDIKANAFVHHMVRN 206 + G +V + + F+ MVRN Sbjct: 183 SGTLPAGALLTCSEPYTSWRCTGTHPDQPPATAGHPLAGIGLELVWSFEGDGFLKQMVRN 242 Query: 207 IVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYP 253 ++G L+ VG + ++A DR+ A ATA A GL L V YP Sbjct: 243 MMGLLVAVGRGALAADDVPGIMATLDRSRAPATAPACGLTLSEVYYP 289 >UniRef50_O66953 tRNA pseudouridine synthase A n=2 Tax=Aquificaceae RepID=TRUA_AQUAE Length = 241 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 122/240 (50%), Gaps = 3/240 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 L + + G+ +YGWQ Q +R+VQ +++KALSQ+ E + V RTD+GVH + Sbjct: 3 NYLLRLAFVGTNFYGWQVQPNLRTVQGEIQKALSQILCEDVKVTGCCRTDSGVHALDYIA 62 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 +F+T + +N LP D+ V VK V ++F+AR+S + Y Y I+N +R Sbjct: 63 NFKTQKDFPEEKLLKALNGILPKDVGVYAVKKVSEEFNARYSVKGKVYLYKIWNSEVRNP 122 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 L ++ E + + G +DF + ++ + R N+ +++ P + Sbjct: 123 FLYPFSWQVKREINTEVLRNILKKFEGTHDFRALTKLE-EERNTVINLEEVSLNVEYPLI 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + +KA+ F+ +MVR IVG+ +++ E + ELL K + TA +GL+L V Sbjct: 182 EIRLKASHFLRYMVRRIVGTAVKISLGLYSEEVLEELLQGK--GNSPYTAPPQGLHLEKV 239 >UniRef50_C7RE26 Pseudouridylate synthase n=3 Tax=Anaerococcus RepID=C7RE26_ANAPD Length = 246 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 118/245 (48%), Gaps = 1/245 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + L YDG+ + G+Q Q + RSV+E+L A+ +V E + GRTD+GVH Sbjct: 2 IRNVLLETAYDGTNFAGFQYQKDERSVEEELRNAIRKVTGEDNRIVSCGRTDSGVHARSH 61 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V+F T + A++ + +LP DI K V DFHARFS ++ Y+Y+IY RL Sbjct: 62 FVNFLTASNISPKAFSFHIQPHLPDDILALSSKEVSLDFHARFSCKSKLYKYVIYRGRLM 121 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSR-TPWRNVMHINVTRHG 187 V PLD +R+ + + L GE+DF F + + R + G Sbjct: 122 YPVFRNYKEEISYPLDLKRLDQGLKILEGEHDFRLFMREDKKLKINTVRKIDEAYFEEEG 181 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + + K +F+H+ VR +VGSL+E+ + + A A+GLYL Sbjct: 182 DDLAIYFKGESFLHNQVRIMVGSLIELSRGRLSLDDYRKFFDKDNNKRANPALGAQGLYL 241 Query: 248 VAVDY 252 V++ Sbjct: 242 RRVEF 246 >UniRef50_C5RIE6 Pseudouridylate synthase n=1 Tax=Clostridium cellulovorans 743B RepID=C5RIE6_CLOCL Length = 245 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 79/245 (32%), Positives = 135/245 (55%), Gaps = 1/245 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + + L IE+DGS+Y GWQ Q + ++VQ K+E LS++ E I V R D G H G Sbjct: 1 MRNLKLTIEFDGSRYKGWQNQKDKEQTVQGKIETVLSKMTGEEIEVIGCERIDTGAHADG 60 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 + +F+T A ++ + LP DI V++++ V + FHAR++A A+ Y Y+I N+ L Sbjct: 61 YIANFKTNCELSCTAISIYLYEFLPEDILVKFIEEVDERFHARYNAKAKVYEYVINNNNL 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 R K H L+ E M +AA+ G++DF +F ++ +++ R V I + + Sbjct: 121 RNVFNRKYSYHIDIDLNIEEMLKAAEAFKGKHDFKAFTNLKSSAKSTVRTVEDILIKKDN 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + +++ A+ F+ +M R IVG+L+EVG N + + ++L + A+A+ L+L Sbjct: 181 GLIKIELIADDFLLNMERIIVGTLIEVGKGNVKATNVFKMLKDGKKIETIPMAQAKALFL 240 Query: 248 VAVDY 252 V Y Sbjct: 241 KKVIY 245 >UniRef50_B0VGH4 Pseudouridylate synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGH4_9BACT Length = 274 Score = 263 bits (672), Expect = 5e-69, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 126/248 (50%), Gaps = 4/248 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + + I YDG+ Y GWQ+Q ++QE +EK L A + ++ AGRTDAGVH GQ Sbjct: 5 RYLIKICYDGTGYCGWQKQKNGLAIQEVMEKMLEIFAGKKTSLIAAGRTDAGVHSLGQYA 64 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+ + ++ L N LP I V + V +AR+ A R YRY + + + Sbjct: 65 HFDYSGSMQEKQLFLAFNRYLPDSIKVLEIMKVSPCLNARYQAYERSYRYRL--AKEKTP 122 Query: 131 VLSKGVTHFYE-PLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 F L+ E+M A Q LLG++DF++F + + HI+++ Y Sbjct: 123 FNRNYSGFFPHLHLNLEKMQSAVQYLLGKHDFSTFGKSNPEVPNRICELKHISISETERY 182 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKD-RTLAAATAKAEGLYLV 248 V D A+ F+H+MVR IVG+L + + P + E+L + R TA A GLYL+ Sbjct: 183 FVFDFTADRFLHNMVRRIVGTLANISHLHLPPETVLEILENRCPRQNLVITAPASGLYLM 242 Query: 249 AVDYPDRY 256 V YP ++ Sbjct: 243 DVKYPAKF 250 >UniRef50_Q01WL4 tRNA pseudouridine synthase A n=3 Tax=Acidobacteria RepID=TRUA_SOLUE Length = 240 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 125/247 (50%), Gaps = 10/247 (4%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + +I + + YDG ++GWQ Q + ++Q LE+ + + +P+ V +GRTDAGVH Q Sbjct: 1 MRRIRIYLAYDGGPFHGWQVQPGLATIQGILEEIVGGMEGKPVHVAGSGRTDAGVHALAQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V F VN LP I + + V DFH RF A A+ Y Y ++ + Sbjct: 61 VAAFSIENPIPVENLRRAVNRLLPPAIRILCAEEVQADFHPRFDAVAKTYEYRMFRDEVC 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAV---QCQSRTPWRNVMHINVTR 185 V H PLD RM A+ GE+DFT F A + ++ R + + R Sbjct: 121 SPFEWPYVYHHPYPLDEARMATLARAFEGEHDFTPFAASDARDAEGKSKVRTIFSSTLDR 180 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 +V ++ + F+ HMVRNIVG+L+E G N IA+L + R+ ATA A+GL Sbjct: 181 TPQRLVYRVRGSGFLKHMVRNIVGTLIEAGRGN-----IADLNSLPARS--GATAPAKGL 233 Query: 246 YLVAVDY 252 + V+V+Y Sbjct: 234 FQVSVEY 240 >UniRef50_Q1AU61 Pseudouridylate synthase n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AU61_RUBXD Length = 257 Score = 262 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 122/242 (50%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++A +EYDG+ + GW RQ R+V+ +L +AL V P+ + AGRTDAGVH +GQVV Sbjct: 2 RLAGLVEYDGAGFSGWARQPGRRTVEGELSRALETVLRHPVRLTAAGRTDAGVHASGQVV 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 F+ +A L D+A+R P F AR A +R Y Y I N +R Sbjct: 62 SFDARDGTDPGTLAYKASAVLSEDVALRRCVAAPPGFDARRDAASRSYEYRIVNAPVRSP 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + + H LD + AA+ +LG +DF +F + R V R G + Sbjct: 122 LRRRRAVHVGYRLDERLLGEAARRVLGVHDFRAFTPAKSHHVRFERAVSESRWERCGDLL 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 V I A+AF+++MVR +VG+++EV + + ELL R TA A GL LV V Sbjct: 182 VYRITADAFLYNMVRALVGTMLEVARGRRDLASFEELLGGARRAEGGPTAPARGLTLVRV 241 Query: 251 DY 252 Y Sbjct: 242 RY 243 >UniRef50_A5CET3 tRNA pseudouridine synthase A n=2 Tax=Orientia tsutsugamushi RepID=TRUA_ORITB Length = 284 Score = 262 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 95/282 (33%), Positives = 135/282 (47%), Gaps = 40/282 (14%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + +EYDG+ + GWQRQ S+Q+ LE +S + + + AGRTDAGVH GQVV Sbjct: 3 RYKAIVEYDGTNFVGWQRQQNGLSIQQLLEDKISTFTKQTVNLIAAGRTDAGVHALGQVV 62 Query: 71 HFET--------------------------------------TALRKDAAWTLGVNANL- 91 HF+ VN L Sbjct: 63 HFDLIAPNNSKDLACINKETDNKEVSKQNNTTTTIDSLKKMLPCRYNAYKLMSAVNYLLK 122 Query: 92 PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRA 151 P I + + FHARFSA AR Y+Y I N + + PL+ M A Sbjct: 123 PHRIILTSCEITTLQFHARFSAKARHYKYRIINRTVPSVIEQNRTWWIKPPLNVIDMIDA 182 Query: 152 AQCLLGENDFTSFRAVQCQSRTPWRNVMHINV-TRHGPYVVVDIKANAFVHHMVRNIVGS 210 +Q L+G++DFTSFR+ CQ+++P + + I V T + P + + A +F+HHMVRNIVG+ Sbjct: 183 SQHLIGKHDFTSFRSSACQAKSPLKTLTKIEVDTTNYPEIQIYFSAPSFLHHMVRNIVGT 242 Query: 211 LMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 L+ +G + I +L AK+R +A TA + GLY V VDY Sbjct: 243 LVYIGLCKISPAAIKTILFAKNRAMAGPTAPSSGLYFVKVDY 284 >UniRef50_B1W3X8 tRNA pseudouridine synthase A n=16 Tax=Actinomycetales RepID=TRUA_STRGG Length = 284 Score = 261 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 86/261 (32%), Positives = 130/261 (49%), Gaps = 9/261 (3%) Query: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPIT--VFCAGR 58 MSDQ +P ++ L + YDG + GW +Q R+VQ ++E AL V +T + AGR Sbjct: 1 MSDQAEPGFVRVRLDLSYDGKDFSGWAKQTSRRTVQGEIEDALRTVTRSSVTYDLTVAGR 60 Query: 59 TDAGVHGTGQVVHFETTALRK---DAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATA 115 TDAGVH GQV H + + + LP D+ + P F+ARFSA Sbjct: 61 TDAGVHARGQVAHVDLPEAVWAEHEEKLLRRLAGRLPLDVRIWRAAPAPAGFNARFSALW 120 Query: 116 RRYRYIIYNHRLR-PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTP 174 RRY Y + + + V PLD + M+ AA ++GE+DF ++ + + T Sbjct: 121 RRYAYRVGDRPGGVDPLTRGHVLWHDRPLDLDAMNEAAALMVGEHDFAAYCKKR-EGATT 179 Query: 175 WRNVMHINVTRH--GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKD 232 R + + R + ++A+AF H+MVR ++G+ + VG +P +W AE+LAAK Sbjct: 180 IRTLQKLRWVRDPATGVLTATVQADAFCHNMVRALIGAALFVGDGRRPAAWPAEVLAAKV 239 Query: 233 RTLAAATAKAEGLYLVAVDYP 253 R + GL L V YP Sbjct: 240 RDPGVHVVRPHGLTLEEVAYP 260 >UniRef50_C3JAB4 Pseudouridylate synthase (Fragment) n=2 Tax=Bacteria RepID=C3JAB4_9PORP Length = 264 Score = 261 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 92/252 (36%), Positives = 129/252 (51%), Gaps = 6/252 (2%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + L I +DGS Y GWQRQ +VQ+ +E+ALS + PI++ AGRTDAGV+ Sbjct: 3 RYFLDIAFDGSSYCGWQRQPNGLAVQQVIEEALSLLFRTPISIVGAGRTDAGVNAYSLPA 62 Query: 71 HFETTALRK--DAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 H + K W +N LP +I +R ++ V HARF A +RRY Y I R Sbjct: 63 HVDIPETAKGTPYRWRKSLNGILPHNINIRSIRPVQPSAHARFDAISRRYLYFI--AEER 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG- 187 + V D E+M++AAQ LLG +DFTSF + + T + + Sbjct: 121 DPFNRQWVLPVRPFPDIEKMNQAAQYLLGTHDFTSFSRLHTDTHTNICTIQEAFWSPSSY 180 Query: 188 -PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 I AN F+ +MVR IVG+L+EVGA I E++ A+DR A A+ + E L+ Sbjct: 181 PSTWQFSITANRFLRNMVRAIVGTLLEVGASTLAPEDIIEIIRAQDRNRAGASVRGEALF 240 Query: 247 LVAVDYPDRYDL 258 L V+YP L Sbjct: 241 LAHVEYPKEIYL 252 >UniRef50_B4D9U5 Pseudouridylate synthase n=2 Tax=Verrucomicrobia RepID=B4D9U5_9BACT Length = 251 Score = 261 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 123/246 (50%), Gaps = 4/246 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++ + I YDG + GWQ Q +VQ+ +E A ++ + V +GRTDAGVH Q+ Sbjct: 6 RLKMLIAYDGRPFRGWQSQATKDAVQDHMEAAFAKTIGGRVVVHGSGRTDAGVHALAQIA 65 Query: 71 HFETTALR-KDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 H + A R + +AW +N LP +I V V DFHARF A + Y Y ++N Sbjct: 66 HADVPAARLEVSAWRGALNNFLPPEIRVLRVSRAAPDFHARFHARGKIYTYRMWNASYLH 125 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSF---RAVQCQSRTPWRNVMHINVTRH 186 + H LD + + + AQ L G++DF F RA + R + HI +TR Sbjct: 126 PLEIGRAWHMPSKLDLDILRQGAQMLEGKHDFAGFAANRAPGYAAEDTVRTIQHICLTRR 185 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G + + + N F++ MVR + G+L+ ++I ELLA K + A AEGLY Sbjct: 186 GDLLNLRFEGNGFLYKMVRLLTGTLVRCAQGRAELTFIKELLAGKGAKKTSFAAPAEGLY 245 Query: 247 LVAVDY 252 L V Y Sbjct: 246 LTRVLY 251 >UniRef50_D1AG36 Pseudouridylate synthase n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AG36_SEBTE Length = 244 Score = 261 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 74/244 (30%), Positives = 117/244 (47%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I + EYDGSK+ G+QRQ ++VQ +E+ + NE + + +GRTD GVH GQ Sbjct: 1 MKNIKIVYEYDGSKFSGFQRQLNKKTVQGSIEEVIKNYFNEEVNLLSSGRTDKGVHALGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V +F +N L G I V K DFHARFSA R Y YI+ Sbjct: 61 VSNFFMEKSISPDIIKGILNRALSGKIRVTDAKEADSDFHARFSAKTRTYLYIMKLKDEI 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 S V+ + E++ + + +G ++F SFR ++ P R + +I Sbjct: 121 TPFESSYVSALDGKIIPEKLQKIMEPFIGRHNFDSFRKKDKDNKNPEREINNIRCYEEDK 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + ++I+ +F+ M+R ++GS + V + +I + L D A +EGLYL Sbjct: 181 RLFIEIEGKSFLKTMIRIMIGSALAVYFEKRNPDYICDKLDNPDSDGEKILAPSEGLYLY 240 Query: 249 AVDY 252 V+Y Sbjct: 241 KVNY 244 >UniRef50_D2MMG6 tRNA pseudouridine synthase A n=1 Tax=Bulleidia extructa W1219 RepID=D2MMG6_9FIRM Length = 320 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 72/245 (29%), Positives = 112/245 (45%), Gaps = 2/245 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + Y G+ Y GWQ Q + S+QEK+E LSQ+ E TV +GRTDA V+ GQ Sbjct: 1 MRYFKAIVAYVGANYCGWQSQKKGNSIQEKIEAVLSQINQEKTTVIASGRTDAKVNALGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 F++ W ++ LP DI V+ V+ V + FHARF + Y Y I+ Sbjct: 61 CFQFQSEKNIDSYRWLGIFHSFLPKDIYVKQVEEVDETFHARFLVEQKTYLYRIHLGDY- 119 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSF-RAVQCQSRTPWRNVMHINVTRHG 187 E L+ + M + + G + F SF + + R + + + Sbjct: 120 DVFQKDDSFQLREDLNLKEMRKCWKLFEGTHSFLSFNTSSLSEYPNQVRTIFRTELRKIS 179 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 ++ ++I N ++ HMVR +VG+ +EVG + +L R A A A+GL L Sbjct: 180 DHLELEISGNGYLRHMVRILVGTCLEVGRGKLTIEEVQRMLNDPSRHYATKKAPAQGLCL 239 Query: 248 VAVDY 252 V Y Sbjct: 240 KEVSY 244 >UniRef50_B2UNB6 tRNA pseudouridine synthase A n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=TRUA_AKKM8 Length = 265 Score = 260 bits (664), Expect = 5e-68, Method: Composition-based stats. Identities = 76/256 (29%), Positives = 112/256 (43%), Gaps = 9/256 (3%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + +I YDG Y GWQ Q R+VQ+ LE+A S + + +GRTDAGVH GQ Sbjct: 1 MTRIRFTAAYDGRPYLGWQSQPGGRTVQDVLERAFSGLFGTTCRIHGSGRTDAGVHALGQ 60 Query: 69 VVHFETTA--LRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 V H + W +N LP I + + VP FHARFSAT + YRY I Sbjct: 61 VFHADAPDTHRIPADKWPAALNTRLPRTIRITHAEYVPPGFHARFSATGKTYRYCISRAP 120 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPW------RNVMH 180 + + H + + +A G +DFT+F A++ P R + Sbjct: 121 ILNPFDAGLAWHRPLAWSVDILEQAVHLFRGTHDFTAFAALRGNEPRPIPEGYFRRTITQ 180 Query: 181 INVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAK-DRTLAAAT 239 V + G +V + F++ MVR + G+ E +A L+ A + Sbjct: 181 TQVAQTGEHVFITFTGTGFLYKMVRLMTGAAHEAARGKITLEELARLINAPLPDDKSPFC 240 Query: 240 AKAEGLYLVAVDYPDR 255 A +GL L+ V YP+ Sbjct: 241 APPDGLTLMRVHYPEE 256 >UniRef50_Q9RS37 tRNA pseudouridine synthase A n=3 Tax=Deinococcus RepID=TRUA_DEIRA Length = 280 Score = 259 bits (662), Expect = 8e-68, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 127/249 (51%), Gaps = 5/249 (2%) Query: 7 PPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANE-PITVFCAGRTDAGVHG 65 P ++ L + +DG Y GWQ Q SVQE L+ AL + E + AGRTDAGVH Sbjct: 13 PGFTRLRLTVAWDGRDYAGWQEQRNAVSVQETLQTALHALGGEGALRPVSAGRTDAGVHA 72 Query: 66 TGQVVHFE--TTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIY 123 +H++ TT +NA LP ++V + P FHARFS T RRY Y ++ Sbjct: 73 EAMPLHWDVPTTFRVPLVQLPRALNAWLPASVSVLSAEVAPAGFHARFSCTERRYVYRLW 132 Query: 124 NHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV 183 R + + H PLDAE M+RAAQ L+G +DF +F + R R+++ + V Sbjct: 133 VAPQRHPLWAGRALHVPGPLDAEAMNRAAQSLIGLHDFAAFATR--EDRQTVRDLLRLEV 190 Query: 184 TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 G + + +F+ HMVR +VG+L+ VG + + +LA+++R A A Sbjct: 191 QPQGELWDIHVAGESFLRHMVRGLVGTLLLVGQGKLGAAEVEGILASRERARAGANVPPG 250 Query: 244 GLYLVAVDY 252 GLY +Y Sbjct: 251 GLYFAGAEY 259 >UniRef50_C3WLS9 Pseudouridylate synthase n=2 Tax=Fusobacterium RepID=C3WLS9_9FUSO Length = 246 Score = 259 bits (662), Expect = 8e-68, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 125/245 (51%), Gaps = 3/245 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 I + YDGS+YYG+QRQ +VQ ++EK L V E I + AGRTD GVH Q Sbjct: 3 RKNIKIEFRYDGSRYYGFQRQPNKETVQGEIEKILKIVTKEDINLISAGRTDRGVHANHQ 62 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V +F T++ + + LP DI + V+ V + F+AR A R Y YII + Sbjct: 63 VSNFYTSSTIPVEKYKYLLTRALPKDIDILSVEEVDEKFNARHDAKMREYVYII--SWEK 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR-HG 187 ++ + +DAER+ + LG +DF +FR C S+ R + I+V Sbjct: 121 NPFEARYCKFVKDKIDAERLEKIFSSFLGIHDFRNFRLSDCMSKVTVREIYSIDVKYFSE 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + + I+ +AF+ VR +VG+ +EV N P++ I +L + + +AEGLYL Sbjct: 181 NKLKICIRGSAFLKSQVRIMVGTALEVYYKNLPKNHIDLMLNDFSKEYKKSLVEAEGLYL 240 Query: 248 VAVDY 252 ++Y Sbjct: 241 NRINY 245 >UniRef50_Q3AW68 tRNA pseudouridine synthase A n=39 Tax=cellular organisms RepID=TRUA_SYNS9 Length = 300 Score = 259 bits (662), Expect = 9e-68, Method: Composition-based stats. Identities = 93/254 (36%), Positives = 134/254 (52%), Gaps = 2/254 (0%) Query: 4 QQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN-EPITVFCAGRTDAG 62 +QP + +IAL ++Y+GS + GWQRQN RSVQ LE A++Q+ PI F AGRTDAG Sbjct: 10 PEQPILRRIALSLQYEGSDFCGWQRQNNARSVQAVLETAIAQLDPLRPIQSFAAGRTDAG 69 Query: 63 VHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYII 122 VH QVVHF+ + A W +N LP I VR P D+HA +SA RRYRYII Sbjct: 70 VHAAAQVVHFDCSGPIPAAKWAPALNGRLPASIRVRESVERPRDWHACYSAVYRRYRYII 129 Query: 123 YNHRLRPAVLSKGVTH-FYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHI 181 +N R L+ H ++ L+ E M A + ++G +DF +F + + + Sbjct: 130 HNGRRPNLFLTPWTWHRYHHRLNEENMRVALEGMIGLHDFAAFMRAGSRRPHSRTTIQDV 189 Query: 182 NVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAK 241 V R G + V+I+A+ F++ MVR ++ L+ VG H + + R A Sbjct: 190 LVEREGDLIRVEIQASGFLYGMVRLLMAQLVAVGEHRLSVKAFEQRWRDRRRDQVREAAP 249 Query: 242 AEGLYLVAVDYPDR 255 A GL L+ Y + Sbjct: 250 ARGLCLLRAGYAEP 263 >UniRef50_B6YQE4 tRNA pseudouridine synthase A n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=TRUA_AZOPC Length = 249 Score = 257 bits (658), Expect = 2e-67, Method: Composition-based stats. Identities = 68/244 (27%), Positives = 128/244 (52%), Gaps = 2/244 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + + + Y+G Y GWQ Q +VQ+++++ LS + + +T+ AGRTDAGVH Sbjct: 3 RYFIYLAYNGRNYCGWQIQPNGITVQQRIQQCLSILLRKSVTIIGAGRTDAGVHANLMTA 62 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+ + + T +N LP DI + + V + HARF A +R+Y+Y I + Sbjct: 63 HFDWEEILSTTSLTKRLNGILPCDILIYKIIPVKKNAHARFDAISRKYKYYITYQK--NP 120 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 ++ + +PL+ M+ A+ L +DFTSF + +RT + Sbjct: 121 FRNEQLFRLKQPLNKHLMNEASNILSEYSDFTSFCKLHSNTRTNVCRISKAEWNTVQGID 180 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + IKA+ F+ +MVR+IVG+++++G + + +++ +K+ + ++ A L+L + Sbjct: 181 IFTIKADRFLRNMVRSIVGTMIDIGKNKLSITDFRKIIESKNHIMLKSSVPAHALFLTDI 240 Query: 251 DYPD 254 +YP+ Sbjct: 241 EYPN 244 >UniRef50_B5HPZ6 Pseudouridylate synthase n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5HPZ6_9ACTO Length = 289 Score = 257 bits (658), Expect = 2e-67, Method: Composition-based stats. Identities = 88/267 (32%), Positives = 132/267 (49%), Gaps = 10/267 (3%) Query: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVR-SVQEKLEKALSQVANEP---ITVFCA 56 MSD+ QP ++ L + YDGS + GW +Q R +VQ ++E AL V + A Sbjct: 1 MSDEVQPGDVRVRLDLSYDGSDFSGWAKQAGGRRTVQGEIEDALRTVTRSKDVTYELTVA 60 Query: 57 GRTDAGVHGTGQVVHFETTALRKDA---AWTLGVNANLPGDIAVRWVKTVPDDFHARFSA 113 GRTDAGVH GQV H + + LP D+ V ++ P F+ARF+A Sbjct: 61 GRTDAGVHARGQVAHVDLPEGLWAEHRDKLLKRLAGRLPKDVRVWSLREAPAGFNARFAA 120 Query: 114 TARRYRYIIYNHRLR-PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSR 172 RRY Y + + +L V LD M AA+ L+GE+DF ++ + + Sbjct: 121 LWRRYVYRVGDQPGGVDPLLRNHVLWHDWELDVAVMDAAAKSLVGEHDFAAYAKRR-EGA 179 Query: 173 TPWRNVMHINVTRHGPYVV-VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAK 231 T R ++ V R VV ++++A+AF H+ VR++VG+L+ VG ++ W ++L A Sbjct: 180 TTIREILDFGVRRRADGVVEIEVRADAFCHNQVRSMVGALLFVGDGHRGVEWPRKVLDAG 239 Query: 232 DRTLAAATAKAEGLYLVAVDYPDRYDL 258 R A + GL L V YP L Sbjct: 240 VRDSAVHVVRPHGLTLEEVAYPADDQL 266 >UniRef50_A9HKQ8 Pseudouridylate synthase n=4 Tax=Alphaproteobacteria RepID=A9HKQ8_GLUDA Length = 258 Score = 257 bits (657), Expect = 3e-67, Method: Composition-based stats. Identities = 108/255 (42%), Positives = 143/255 (56%), Gaps = 5/255 (1%) Query: 7 PPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVA-NEPITVFCAGRTDAGVHG 65 P + + A+ IEYDG + GWQRQ SVQ+ LE+A S++A + AGRTDAGVH Sbjct: 4 PSLQRWAVRIEYDGRPFVGWQRQITGLSVQQVLEEAASRLASGRVVPSITAGRTDAGVHA 63 Query: 66 TGQVVHFETTA--LRKDAAWTLGVNANL-PGDIAVRWVKTVPDDFHARFSATARRYRYII 122 TGQ H + D+ +N ++ P +AV V ++ ARFSA R YRY I Sbjct: 64 TGQAAHLDFPGDVRLNDSTVRDALNFHMKPYPVAVLRACPVDTEWSARFSAIRRSYRYRI 123 Query: 123 YNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHIN 182 N R RP + V LD M RAA+ LLG +DFTSFRA CQ+R+P R + + Sbjct: 124 LNRRSRPTLDDGRVWLVKRTLDEAAMARAARLLLGRHDFTSFRASACQARSPLRTLDRLG 183 Query: 183 VTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 V R G +V++ +A +F+HH VRN+VG+L VG +A LAA DR A TA Sbjct: 184 VVRQGEEIVIEAEARSFLHHQVRNMVGTLKLVGEGLWAPDRVAAALAACDRRAAGPTAPP 243 Query: 243 EGLYLVAVDY-PDRY 256 +GLYL V Y PD + Sbjct: 244 DGLYLTGVGYDPDPF 258 >UniRef50_A9RTE3 Pseudouridylate synthase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RTE3_PHYPA Length = 299 Score = 257 bits (657), Expect = 3e-67, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 125/245 (51%), Gaps = 9/245 (3%) Query: 26 WQRQNEVRSVQEKLEKALSQVAN---EPITVFCAGRTDAGVHGTGQVVHFETTALRKD-A 81 WQ Q S+QEK+E ALS+ + + + AGRTDAGVH GQV HF T D Sbjct: 36 WQIQKNYVSIQEKVEDALSKFTRLPRDELKLVGAGRTDAGVHAWGQVAHFTTPTCFCDLE 95 Query: 82 AWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYE 141 +N LP DI + V +V DFHAR+SA + Y+Y Y + H Sbjct: 96 PLHTSLNGILPPDIRILEVSSVQPDFHARYSACRKTYQYKAYVSPVMDPFQHAYAYHIKN 155 Query: 142 PLDAERMHRAAQCLLGENDFTSFR--AVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAF 199 ++ M AA +G ++F++F + SR R+++ V+ GP ++ +++ +F Sbjct: 156 SVNIAAMEEAASYFVGTHNFSAFANHSADTASRDTLRDLLSFTVSSIGPQLLFEVEGKSF 215 Query: 200 VHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRT---LAAATAKAEGLYLVAVDYPDRY 256 ++ VRN+VG L++VG P S + +L +DR + A A GLYL++V Y D+ Sbjct: 216 MYKQVRNMVGLLVQVGKELVPPSMVRTILLTEDRRELAKISPVAPAHGLYLMSVGYDDKV 275 Query: 257 DLPKP 261 P P Sbjct: 276 LRPVP 280 >UniRef50_C7HSK8 Pseudouridylate synthase n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HSK8_9FIRM Length = 252 Score = 257 bits (656), Expect = 4e-67, Method: Composition-based stats. Identities = 71/245 (28%), Positives = 119/245 (48%), Gaps = 1/245 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I L I+YDGS + G+Q Q R+VQ++LE A+ +V E + +GRTD+GVH Sbjct: 3 IQNILLKIQYDGSLFEGFQIQKNKRTVQKELEDAIRKVTGEENRIIASGRTDSGVHANEM 62 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 ++F T + + + + LP DI K V +FHARFS + Y+Y+I ++ Sbjct: 63 YINFLTAKIIRADKFHFHLKKYLPDDILALESKKVDKNFHARFSVKTKTYKYVISLDKIL 122 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFR-AVQCQSRTPWRNVMHINVTRHG 187 + + LD +++ + + L GE+DF +F + + R + + Sbjct: 123 HPIYRNYMEQITYKLDFDKLKQGMEILKGEHDFKAFMLSEKNDIINTIRKIDDCYFVLNE 182 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + + KA +F+H+ VR + GSL+E+ + A T KA GLYL Sbjct: 183 NRLYLYFKAESFLHNQVRIMAGSLIELSRGKISLDDFKYYFNKNNTRRANPTLKAGGLYL 242 Query: 248 VAVDY 252 ++DY Sbjct: 243 DSIDY 247 >UniRef50_Q0SPF2 tRNA pseudouridine synthase A n=21 Tax=Borrelia RepID=TRUA_BORAP Length = 246 Score = 256 bits (655), Expect = 5e-67, Method: Composition-based stats. Identities = 76/246 (30%), Positives = 135/246 (54%), Gaps = 1/246 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + KI I YDGS Y+G+Q Q ++Q ++EKAL ++ + I + +GRTD GVH Q Sbjct: 1 MKKILAEIAYDGSMYHGFQIQPTKPTIQGEIEKALMKINKKKIKIHSSGRTDKGVHAKRQ 60 Query: 69 VVHFETTALRKDAAWTLGVNA-NLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 ++ F+ + +NA L I + +K V + FH RF+A R+Y Y I N Sbjct: 61 IITFDININIQLNNLKKALNAILLKPGIKILKLKHVKNSFHPRFNAQKRKYSYCILNSDN 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 S + + L+ +++ A+ L+G +DFT+F ++ +S++ +R++ + G Sbjct: 121 YYPWESYQAYYVNKKLNINNLNQMAKILIGNHDFTTFSCIKDKSKSKFRHIHSAKFKKKG 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 Y++ +I ++F+ MVR+I+G+++++ N+ S +L +K+R LA TA A L+L Sbjct: 181 KYIIFEIIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALFL 240 Query: 248 VAVDYP 253 V Y Sbjct: 241 DKVYYE 246 >UniRef50_Q4FNF9 tRNA pseudouridine synthase A n=5 Tax=Bacteria RepID=TRUA_PELUB Length = 246 Score = 256 bits (655), Expect = 6e-67, Method: Composition-based stats. Identities = 77/246 (31%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 +++ + IEY G+ + GWQ Q++ +S+Q++++ LS+ E + + +GRTDAGVH Q Sbjct: 1 MFRYQVLIEYIGTNFVGWQIQSKGKSIQKEIQVKLSKFLKEKVVLIGSGRTDAGVHAIEQ 60 Query: 69 VVHFETTALRKD-AAWTLGVNANLPG-DIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 HF+ ++ +N + I+V +K FHAR SA R Y+YII+N Sbjct: 61 SAHFDCKKEIQNLDKLLKSINHFINDKGISVLAIKKRSLKFHARHSAKQRIYKYIIFNRL 120 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 +P++ + H + LD E M + ++ LLG DF++FRA C +++P + + +N+ Sbjct: 121 SKPSLEKERGWHIIKKLDIELMKKGSKKLLGTKDFSTFRASSCNAKSPIKTMKSVNIKSK 180 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 + + K+ +F+ VR++VGSL + + ++ +K R L A A AEGL+ Sbjct: 181 DGRIEIQFKSQSFLQQQVRSMVGSLKYLAENKWDLKKFEFVIKSKKRILCAPPAPAEGLF 240 Query: 247 LVAVDY 252 L V Y Sbjct: 241 LEKVIY 246 >UniRef50_A0LRQ0 Pseudouridylate synthase n=2 Tax=Actinomycetales RepID=A0LRQ0_ACIC1 Length = 297 Score = 255 bits (653), Expect = 8e-67, Method: Composition-based stats. Identities = 98/259 (37%), Positives = 138/259 (53%), Gaps = 18/259 (6%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN--EPITVFCAGRTDAGVHGTGQ 68 ++ + + YDG+ + G+ RQ +R+VQ ++E+AL+ V EP V AGRTDAGVH GQ Sbjct: 20 RLRIDLGYDGTDFAGFARQPGLRTVQAEVERALAVVLRLPEPPPVTAAGRTDAGVHARGQ 79 Query: 69 VVHFETT-------------ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATA 115 V+H + A A +N LP DIAV V P F ARFSA A Sbjct: 80 VLHVDVPIDALRVVGAAETGAADAVAQLAARLNGVLPDDIAVHAVGLAPPGFDARFSALA 139 Query: 116 RRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPW 175 RRY Y + + R P + + + PLD M+ A LLGE+DF +F + ++ T Sbjct: 140 RRYSYRVADRRWDP-LRRRDTLRWPRPLDETAMNAAGAALLGEHDFAAFCRRR-ENATTI 197 Query: 176 RNVMHINVTRHGPYVVV-DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRT 234 R ++ R G V+V ++A+AF H MVR +VG+++ VGA +P W AE+LAA+ R Sbjct: 198 RRLLRFEWLRDGDGVLVAQVEADAFCHSMVRALVGAVLAVGAGRRPVGWPAEVLAARARD 257 Query: 235 LAAATAKAEGLYLVAVDYP 253 A GL L V YP Sbjct: 258 PAVTVVPPHGLTLEEVCYP 276 >UniRef50_D2QH82 tRNA pseudouridine synthase A n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QH82_9SPHI Length = 252 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 120/247 (48%), Gaps = 4/247 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + + + Y G+ Y+GWQ Q S+Q LE ALSQ +P+ + +GRTDAGVH Q Sbjct: 2 RYFIELSYRGTAYHGWQTQANGISIQITLEAALSQRLGKPVYIMGSGRTDAGVHAKQQFA 61 Query: 71 HFETTALRK-DAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 HF++ + +N LP DIA+ + V D HARFSA +R Y+Y I + Sbjct: 62 HFDSEEPLDITESLIYSLNCMLPEDIAIHAIFPVSDKTHARFSAISRYYQYHITRQK--D 119 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG-P 188 A HF L+ +RM+ A LL +F SF + + Sbjct: 120 AFQGTLTYHFRPQLNVDRMNEACTLLLRHTNFQSFSKARANVTHFHCQLEFAYWRYTNVD 179 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + IKAN F+ MVR IVG+++E+G +++ A+DR +A A A GLYLV Sbjct: 180 CLTFHIKANRFLWGMVRTIVGTMLEIGQERMSLEQFEKIILARDRKIAGRAAPANGLYLV 239 Query: 249 AVDYPDR 255 V YP Sbjct: 240 EVGYPAE 246 >UniRef50_C6WLZ4 Pseudouridylate synthase n=4 Tax=Actinomycetales RepID=C6WLZ4_ACTMD Length = 314 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 87/253 (34%), Positives = 125/253 (49%), Gaps = 2/253 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 ++ L + YDG+++ GW RQ R+V LE +S V E + + AGRTDAGVH GQ Sbjct: 36 RVRVRLDLAYDGTEFSGWARQPNRRTVCGVLEDTMSTVLREDVVLTVAGRTDAGVHAAGQ 95 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V H + A + LP D+ V + VP F ARF+A R Y Y + + Sbjct: 96 VAHVDLPEAADVAGLPKRLARALPADVRVFSARVVPAAFDARFAALRRHYEYRVTDAPFG 155 Query: 129 PAVLSKGVT-HFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 L + T + LD M+ A+ +LGE DF ++ + + T R + + R G Sbjct: 156 AHPLRRLDTLAWPRQLDVAAMNAASGLMLGERDFCAYCRRR-EGATTIRELQRLEWVREG 214 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + + A+AF H MVR++VG+L+ VG +P W A LL+ R+ A GL L Sbjct: 215 DLLTAFVSADAFCHSMVRSLVGALLAVGEGRKPVEWPASLLSLHSRSSEVTVAPPHGLSL 274 Query: 248 VAVDYPDRYDLPK 260 V VDYP DL Sbjct: 275 VRVDYPADEDLAA 287 >UniRef50_A4SAH5 Pseudouridylate synthase n=4 Tax=Mamiellales RepID=A4SAH5_OSTLU Length = 286 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 78/259 (30%), Positives = 122/259 (47%), Gaps = 14/259 (5%) Query: 11 KIALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVAN---EPITVFCAGRTDAGVHGT 66 AL I YDG +Y G+Q Q +V ++Q +LE+AL+++ E + + AGRTDAGVH Sbjct: 17 TYALKISYDGERYNGFQYQGEDVPTIQRELERALAKLTGIDRERLRLGAAGRTDAGVHAR 76 Query: 67 GQVVHFETTALRKDA--AWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYN 124 GQV HF + +N LP DI V FH+RF A+ + Y Y + Sbjct: 77 GQVAHFYCEKSLGEDLTRCQKAMNGMLPKDIRVDAFWEPHPLFHSRFHASGKTYHYYVDA 136 Query: 125 HRLRPAVLSKGVTHF-YEPLDAERMHRAAQCLLGENDFTSFRA----VQCQSRTPWRNVM 179 K + P D E + +AAQ +G D+ F + R R + Sbjct: 137 RATSSPFTRKYAHQVGWRPCDVELLRQAAQLFVGTMDYKGFCNTSRDKSNEDRNTTRTIR 196 Query: 180 HINVTRH---GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLA 236 +V + ++++ + F++ VRN+VG+L+ V + +++ L+ KDR+ A Sbjct: 197 RFDVFEDAADDGLIRLEVEGDGFLYRQVRNMVGALLVVASGKHDLAYLRTLIETKDRSRA 256 Query: 237 AATAKAEGLYLVAVDYPDR 255 A A GL+L V YP Sbjct: 257 PMGAPARGLFLHEVFYPTE 275 >UniRef50_Q8R601 tRNA pseudouridine synthase A n=14 Tax=Fusobacterium RepID=TRUA_FUSNN Length = 247 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 122/246 (49%), Gaps = 3/246 (1%) Query: 8 PVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 I + YDGS YYG+QRQ +VQ ++EK L V E I + AGRTD GVH Sbjct: 4 RRKNIKIEFRYDGSSYYGFQRQPNKITVQGEIEKVLRIVTKEEINLISAGRTDRGVHANH 63 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QV +F T++ + + LP DI + V+ V ++F+AR +A R Y YII Sbjct: 64 QVSNFYTSSNIPIEKYKYLLTRALPNDIDILSVEEVDENFNARHNAKMREYIYII--SWE 121 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + ++ E + AE++ + +G +DF +FR C S+ R + I V G Sbjct: 122 KNPFEARYCKFVKEKIVAEKLEKIFSDFIGVHDFKNFRLSDCVSKVTVREIYQIEVKYFG 181 Query: 188 PY-VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 + + IK +AF+ VR +VG+ +E+ E+ I +L + +AEGLY Sbjct: 182 ENKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLLENHIRLMLNDFTKEYKKNLVEAEGLY 241 Query: 247 LVAVDY 252 L ++Y Sbjct: 242 LNKIEY 247 >UniRef50_C7ND49 Pseudouridylate synthase n=3 Tax=Leptotrichia RepID=C7ND49_LEPBD Length = 251 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 71/249 (28%), Positives = 121/249 (48%), Gaps = 4/249 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + +YDGSK+ G+QRQ +++VQ ++EK +S+ + I + +GRTD GVH Q Sbjct: 3 KRNVKIVYQYDGSKFCGFQRQMGIKTVQGEIEKVISKTFFQNINMISSGRTDKGVHAIEQ 62 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V +F A +N L G+I + ++ + + F++RF A R Y YI+ Sbjct: 63 VSNFMIDQNIPLNAIKRQLNKRLKGEIKILDIEEMDEKFNSRFDAQNRTYLYIMKVEDEI 122 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + +T E +D ++ + +G++DF+SF R P R + IN Sbjct: 123 TPFETNYITGIKEMIDIDKFQKIMLEFIGKHDFSSFMKKDKAYRNPVREIFFINCYYDKN 182 Query: 189 ----YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 + ++I N F+ MVR ++GS + V + +++I + L D A +EG Sbjct: 183 GKEKQINIEICGNGFLKTMVRIMIGSALAVYFGKEEKNYIKKKLENPDADGKKILAGSEG 242 Query: 245 LYLVAVDYP 253 LYL V Y Sbjct: 243 LYLYKVSYE 251 >UniRef50_A6DH96 Pseudouridylate synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DH96_9BACT Length = 276 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 123/248 (49%), Gaps = 4/248 (1%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN-EPITVFCAGRTDAGVHGTGQVV 70 L I++DG+ ++GWQ QN+ +VQE++EKAL+ + N I + +GRTDAGVH G Sbjct: 4 YKLSIQFDGTTWFGWQSQNDFEAVQEQIEKALNTLYNCSEIKIDGSGRTDAGVHAFGLCA 63 Query: 71 HFETTALRKD--AAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 F + K G+NA LP I +R DFHARFS + Y Y I N Sbjct: 64 TFTEPKISKFTSDTLRKGLNALLPVSIRIRSALQCETDFHARFSCIGKTYVYFIDNSTTS 123 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQ-SRTPWRNVMHINVTRHG 187 +L+ H + L+ E+M ++ Q L G++DF++F + R V + G Sbjct: 124 SPILAPYSWHMRKKLNREKMRQSLQHLEGKHDFSAFTVDRKNLQGHAIRTVFKAELIEIG 183 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 V + + F++ MVR++ G ++ VG Q + L + R+ A TA A+GL+L Sbjct: 184 HIVALLFTGDGFLYRMVRSMAGEVVNVGMEFQNPQHTLDALESHQRSEAGVTAPAKGLFL 243 Query: 248 VAVDYPDR 255 Y Sbjct: 244 GQCYYSKE 251 >UniRef50_C1A3U6 Pseudouridylate synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A3U6_GEMAT Length = 259 Score = 253 bits (647), Expect = 5e-66, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 119/246 (48%), Gaps = 4/246 (1%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANE-PITVFCAGRTDAGVHGTGQVV 70 I L +YDG ++ GWQRQ +VR+VQ +E+ L +++ + AGRTDAGVH GQ V Sbjct: 6 ILLVTQYDGGRFAGWQRQPDVRTVQGDMERVLGRLSGGLYVPAVGAGRTDAGVHAHGQGV 65 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL-RP 129 +NA LP DI V + +FH R+SATARRY Y+I L Sbjct: 66 GVRMPPQWTAPRLRRAMNALLPDDIWVAAAYQMEPEFHPRYSATARRYGYLIGTDELASS 125 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQ--SRTPWRNVMHINVTRHG 187 + + PLD E +H A LLGE+ F +F + H Sbjct: 126 PFRRRHEWALHRPLDVEALHGEAAELLGEHTFRAFAIAHTAPVDDHHRCIIHHAAWVPRE 185 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 V ++ AN F+HHMVR +VG++++V +P IA LL D + A A GL L Sbjct: 186 GGWVFEVSANRFLHHMVRFLVGTMVDVALGRRPRGTIARLLVTPDNADTSPPAPAHGLSL 245 Query: 248 VAVDYP 253 V YP Sbjct: 246 REVTYP 251 >UniRef50_B0G612 Pseudouridylate synthase n=7 Tax=Bacteria RepID=B0G612_9FIRM Length = 310 Score = 253 bits (646), Expect = 5e-66, Method: Composition-based stats. Identities = 72/248 (29%), Positives = 126/248 (50%), Gaps = 7/248 (2%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEV---RSVQEKLEKALSQVANEP-ITVFCAGRTDAGVH 64 + I + IEYDGS+Y GW R + ++ K+ L ++ E I + C RT+ GVH Sbjct: 66 MRNIKITIEYDGSRYQGWTRLGKDESNNTISAKIIDVLGKMTGEKNIELNCGCRTEVGVH 125 Query: 65 GTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYN 124 QV +F+T++ +N LP DIA+ V+ VPD FHA+ +A ++ Y Y + Sbjct: 126 AYAQVANFKTSSNLSTKDIQHYLNRYLPMDIAITEVEEVPDRFHAQLNAVSKTYVYRMTI 185 Query: 125 HRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT 184 + K H ++ D + M +AA +GE+DF +F + +S+ R V I++ Sbjct: 186 MDVPSVFERKHTYHCFKTPDKKAMQQAALLFIGEHDFRNFSTAK-KSKNTTREVYDIDIY 244 Query: 185 RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 + + I+A+ F+H+M R ++G+L+++G + + I + + +G Sbjct: 245 GDNEEMQILIQADDFLHNMARLMIGTLLDIGFGLRKKEDIEAIFNGE--KAVGNPCDPKG 302 Query: 245 LYLVAVDY 252 LYL V+Y Sbjct: 303 LYLQEVEY 310 >UniRef50_A6FXP9 Pseudouridylate synthase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FXP9_9DELT Length = 285 Score = 253 bits (646), Expect = 6e-66, Method: Composition-based stats. Identities = 93/282 (32%), Positives = 136/282 (48%), Gaps = 32/282 (11%) Query: 12 IALGIEYDGSKYYGWQRQNE----VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + L + YDG+ ++G+ RQ+ +R++Q LE+ALS + +PI A RTDAGVH G Sbjct: 3 MLLRVAYDGTDFHGFARQDNGGQPLRTIQGCLEQALSTLYKQPIRTRGASRTDAGVHARG 62 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVP----DDFHARFSATARRYRYIIY 123 Q+V F+ LG+ ANLP DI + + RF + YRY + Sbjct: 63 QLVAFDPPFAIPARGLLLGLAANLPADIIASAAWLAEDVEGEPLNPRFHTRGKLYRYRLR 122 Query: 124 NHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHI-- 181 LR + ++ H P+D M AA G +DF FRA CQ+++ R V + Sbjct: 123 PVSLRDPLSARYEWHLPRPIDVAAMQAAAPRFAGTHDFAGFRASDCQAKSTTRRVRSVIV 182 Query: 182 ---NVTRHGP---------------YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESW 223 + P V +D++ +AF+ +MVR +VG+L+ VG Sbjct: 183 NVETLAELDPLAGQRGRIEGPAAPARVTIDVRGDAFLKNMVRIMVGTLVGVGRGQFGAER 242 Query: 224 IAELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDLPKPPMGP 265 I E+LA+ DRT A TA A GL LV V +P+ P PP G Sbjct: 243 IDEVLASGDRTRAGVTAPACGLTLVEVLWPE----PWPPSGG 280 >UniRef50_C2KS13 Pseudouridylate synthase n=2 Tax=Mobiluncus mulieris RepID=C2KS13_9ACTO Length = 326 Score = 252 bits (645), Expect = 7e-66, Method: Composition-based stats. Identities = 95/307 (30%), Positives = 138/307 (44%), Gaps = 62/307 (20%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + +I I YDG ++GW RQ + +VQ LE AL+ + +P+T+ AGRTDAGVH TGQ Sbjct: 1 MTRIRFDIRYDGRPFHGWARQPGLPTVQGALETALTVLFRQPVTLTVAGRTDAGVHATGQ 60 Query: 69 VVHFET-----------------------------TALRKDAAWTLGVNANL-------- 91 V HF+ + + G++ L Sbjct: 61 VAHFDLPDQFSGDWLRDAHDTEFAASLGAIVAASNPPGIANFQLSTGLHRRLESVLRLVT 120 Query: 92 ------------------PGD----IAVRWVKTVPDDFHARFSATARRYRYIIYNHRL-R 128 P + I V + VPD F ARFSA AR Y Y++ + R Sbjct: 121 SGNTPTIPGLNLDDQPIYPPEANGAIVVTAARPVPDAFDARFSALARHYEYLVIDEPTAR 180 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + + PL+ RMH A+ LLG +DF +F + + T R + + V+R P Sbjct: 181 NPLTRNTCWWYGAPLNVARMHEASAGLLGTHDFAAFCKPR-EGATTIRTLKQLGVSRLAP 239 Query: 189 -YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + D+ A+AF H MVR++VG+L EVG + W+ + L + R A A+GL L Sbjct: 240 GEIRFDVAADAFCHSMVRSLVGALTEVGRGKRDADWLEQALHSAVRIPEIPLAPAQGLTL 299 Query: 248 VAVDYPD 254 V VDYP Sbjct: 300 VRVDYPQ 306 >UniRef50_C4DMY7 Pseudouridylate synthase n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DMY7_9ACTO Length = 300 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 128/248 (51%), Gaps = 6/248 (2%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++ L I YDG+ + GW Q R+V ++ ALS + +P + AGRTDAGVH TGQV Sbjct: 23 RLRLDICYDGTDFAGWAFQPGQRTVAGEVFTALSALFGQPEGLTVAGRTDAGVHATGQVA 82 Query: 71 HFETTALRKDAAWTL---GVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 H + A + LP D+ + + V +F+ARFSA +RRY Y + + Sbjct: 83 HVDVPAAAWARYRDRPLWRLRGILPPDVRITAITEVSSEFNARFSALSRRYVYRVADTVW 142 Query: 128 R-PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 + + P+D + M+ AA L+GE+DF +F + + T R + + R Sbjct: 143 GVNPLRRLDTVAWPRPVDLDVMNAAATVLVGEHDFAAFCKRR-EGATTVRALRTVRWDRD 201 Query: 187 GPYV-VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 + + A+AF H MVR++VG+++ VG + +W+A LL +R+ A A GL Sbjct: 202 ADGIARATVVADAFCHSMVRSLVGAMLAVGEGRRDAAWLAALLTRGERSGEVLVAPANGL 261 Query: 246 YLVAVDYP 253 LV V++P Sbjct: 262 TLVEVEFP 269 >UniRef50_A1BFF0 tRNA pseudouridine synthase A n=10 Tax=Chlorobiaceae RepID=TRUA_CHLPD Length = 258 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 80/245 (32%), Positives = 115/245 (46%), Gaps = 3/245 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + I + IEYDG+ Y GWQRQ +VQ ++E+ LSQ+ E I + AGRTD GVH Sbjct: 9 MKNIRITIEYDGTGYAGWQRQAGSFCTVQGEIERILSQILQEDIRLAGAGRTDKGVHARA 68 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 Q+ F++ + +NA LP I + VP+ FHAR SA R YRY + Sbjct: 69 QIATFKSRSSLGPDRMVHSMNALLPNTIRISDPLVVPEGFHARHSAKEREYRYFV--REE 126 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 AVL + Y LD M+R A +LGE+DF+ F V+ R Sbjct: 127 PSAVLGRFSGCSYGSLDLMSMNRVASYVLGEHDFSVFSKETRDRTGCLCRVISCKWFRQR 186 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + V+ I AN F+ MVR + +++ G E++ + T A GL+L Sbjct: 187 EFFVLRISANRFLRSMVRYLAALMIDSGKGLLSPEEAREMIESGILTRQLVPAAPNGLFL 246 Query: 248 VAVDY 252 + Y Sbjct: 247 WKITY 251 >UniRef50_B3EU82 Pseudouridylate synthase n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3EU82_AMOA5 Length = 253 Score = 252 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 114/249 (45%), Gaps = 7/249 (2%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + L I Y G+ Y+GWQ Q SVQ ++K L+Q+ + I + + RTD GVH Q Sbjct: 2 RYFLEIAYQGTHYHGWQIQQNATSVQAVIQKKLTQLLSTNIEIVGSSRTDTGVHAQQQFA 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 H + +N +P DIA+ + V H+RF A +R Y Y I + Sbjct: 62 HVDMPFTIDIDKLKYKLNLIVPSDIAILGIHPVLPTAHSRFDALSRTYVYKI--SCTKNP 119 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTP----WRNVMHINV-TR 185 + F LD E+M+ AA L +F SF V + N++ + T Sbjct: 120 FMQATTYVFRRVLDLEKMNEAAAILKIYKNFESFSKVGSITDHTLYPNLCNIIEAHWSTG 179 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 ++ I AN F+ MVR IVG+L+EVG L KDR LAA+ A GL Sbjct: 180 SNDQLIFQITANRFLRGMVRAIVGNLLEVGLGKCSVKDFEYTLVQKDRNLAASLVPACGL 239 Query: 246 YLVAVDYPD 254 LV V YPD Sbjct: 240 TLVNVTYPD 248 >UniRef50_A9NEH2 Pseudouridylate synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEH2_ACHLI Length = 240 Score = 250 bits (640), Expect = 3e-65, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 122/242 (50%), Gaps = 3/242 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + YDG+ Y G+Q+Q +Q +EKA + I F A RTD GVH QV+ Sbjct: 2 RYKAIFSYDGTNYSGYQKQINQLGIQTVIEKAFRLMTQIDIETFAASRTDKGVHALHQVL 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF++ W +N LP DI + V V D+FHAR SA ++RY Y I + Sbjct: 62 HFDSDIELTSDQWVDALNKRLPTDIRLMKVTPVKDNFHARHSAKSKRYIYKI--AKQPST 119 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 V + + D + + ++G +DF+ F + + + P + + + + Sbjct: 120 VFRGNHELYVKHFDIDLVKDHLHTIVGTHDFSGFSPNK-EHKPPIKTIYSFDYKETKTHY 178 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + I N+F+ +MVR I+G+++ V + +P++ + LL K+R L+A TA A+GLYL + Sbjct: 179 IFSIHGNSFLRYMVRIIMGNVIAVATNKKPQNQLEILLETKNRELSAKTADAKGLYLKHI 238 Query: 251 DY 252 Y Sbjct: 239 YY 240 >UniRef50_UPI0000F2F657 tRNA pseudouridine synthase A n=1 Tax=Acinetobacter baumannii ATCC 17978 RepID=UPI0000F2F657 Length = 205 Score = 250 bits (639), Expect = 4e-65, Method: Composition-based stats. Identities = 96/201 (47%), Positives = 137/201 (68%) Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 V HF+T A+R + W +G N+ LP DI+++W+K + ++FHARF ATARRYRY++YN Sbjct: 1 MVAHFDTNAIRPERGWIMGANSQLPKDISIQWIKQMDEEFHARFKATARRYRYVVYNAPH 60 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 RPA+L K VTH Y+ LD ++M +AA G ++F +FRA CQS P R+V H + HG Sbjct: 61 RPALLHKQVTHIYQKLDVQKMIKAASKFEGTHNFETFRAAACQSNQPVRHVKHCRLFEHG 120 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 Y+V+DI+A+ F+HHMVRNI+G L+E+G I + AA+DR A TA +GLY Sbjct: 121 RYLVLDIQADGFLHHMVRNIMGCLLEIGQGMYEIDHIDAMFAAEDRKAAGITAPPDGLYF 180 Query: 248 VAVDYPDRYDLPKPPMGPLFL 268 + YP+++DLP PP+GP +L Sbjct: 181 IQCYYPEQFDLPHPPLGPHWL 201 >UniRef50_Q6A6S8 tRNA pseudouridine synthase A n=6 Tax=Actinomycetales RepID=TRUA_PROAC Length = 279 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 85/258 (32%), Positives = 132/258 (51%), Gaps = 7/258 (2%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN--EPITVFCAGRTDAGVHGT 66 + + L I YDG+ + GW Q + R+VQ +LE + +V +P + AGRTDAGVH Sbjct: 1 MTRWRLDIAYDGANFSGWATQPDRRTVQGELETWIPRVLRLDQPTPLTVAGRTDAGVHAR 60 Query: 67 GQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 GQV H + +A ++ L D+ V+ V+ VP F ARFSA RRY Y +++ Sbjct: 61 GQVAHVDLPDNVDTSAMLRRLSRVLTPDVVVKSVRPVPSTFDARFSALWRRYVYRLWDES 120 Query: 127 LRPAVLSKGVTH-FYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR 185 RP +++ LD +R++ A LLG DF +F + + T R ++ + R Sbjct: 121 SRPDPVTRFHVAPVRGHLDLDRLNTAGTSLLGLRDFAAFCKHR-EGATTIRTLLDCHAKR 179 Query: 186 HGP---YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 V V ++A+AF H MVR++VG+L V + + + W+ + A+ R + A Sbjct: 180 LDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGRRSQDWLDNVAASTSRASSVLVMPA 239 Query: 243 EGLYLVAVDYPDRYDLPK 260 GL L V YP DL + Sbjct: 240 CGLTLEEVGYPSDEDLAQ 257 >UniRef50_C2D958 Pseudouridylate synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D958_9ACTN Length = 311 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 96/275 (34%), Positives = 134/275 (48%), Gaps = 16/275 (5%) Query: 2 SDQQQPPVYKIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTD 60 + + P V + + Y G+ + G+ QNE VRSV+ L +ALS IT+ CAGRTD Sbjct: 34 TSEFDPFVATLVIRFGYVGTHFCGYAAQNESVRSVEGCLTRALSTFLRRNITLTCAGRTD 93 Query: 61 AGVHGTGQVVHFETTALR---KDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARR 117 AGVH Q V F T ++ P DI++R + P DF ARFSA R Sbjct: 94 AGVHAHAQYVSFPITQSELGMSKHKIMSALSGLCPDDISIRTLYRAPLDFSARFSACERS 153 Query: 118 YRYIIYNHRLRPAVLSKGVTHF--YEPLDAERMHRAAQCLLGENDFTSFRAVQC------ 169 Y Y I L+P + + V + + M+ A + L GE++F SF Sbjct: 154 YTYRIALGPLKPILTHEFVWWVKNIPHVCMDDMNAAGEYLAGEHNFKSFCKASSAQLLEE 213 Query: 170 QSRTPWRNVMHINVTRH----GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIA 225 Q + R + I V+R + +DI NAF+H+MVR I SL+EVG + WI Sbjct: 214 QGLSLNRCLTSIKVSRDYIVGEQILRLDITGNAFLHNMVRIITASLLEVGRGARQPDWIQ 273 Query: 226 ELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDLPK 260 ++L + RT AA TA A+GL L V YP +P Sbjct: 274 DVLRQQTRTAAAMTAPAQGLTLERVGYPAGLLVPW 308 >UniRef50_C2BS51 Pseudouridylate synthase n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BS51_9ACTO Length = 297 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 92/273 (33%), Positives = 130/273 (47%), Gaps = 30/273 (10%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +I L I YDG+ ++GW Q + +VQ LE AL+ + + + + AGRTDAGVH +GQV Sbjct: 2 RIRLDIRYDGTPFHGWAAQPGLPTVQGALESALTVIYRQTVELTVAGRTDAGVHASGQVA 61 Query: 71 HFETTALRKDAAWTLGVNANL------------------------PGDI---AVRWVKTV 103 HF + + L P I V V Sbjct: 62 HFTVPEVGDRIVSPDTLAPRLGAVLRAVLSGNLASPLPDSPAAYPPNAIDALVVTAATVV 121 Query: 104 PDDFHARFSATARRYRYIIYNH-RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFT 162 P+ F ARFSA AR Y Y I + R + + LDA M+ +A LLGE+DF Sbjct: 122 PETFDARFSALARHYVYRIVDDLAARNPLSRNCCWWYPTQLDAAAMNTSAAVLLGEHDFA 181 Query: 163 SFRAVQCQSRTPWRNVMHINVTRHGP-YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPE 221 +F + + T R + + R P + + ++A+AF H MVR++VG+L EVG + Sbjct: 182 AFCKPR-EGATTIRTLQQLETLRTAPGMMEIRVRADAFCHSMVRSLVGALTEVGRAKRDT 240 Query: 222 SWIAELLAAKDRTLAAATAKAEGLYLVAVDYPD 254 +W+A+ LAAK R A A GL L VDYP Sbjct: 241 AWLADALAAKARIPEIPVAPALGLTLTQVDYPQ 273 >UniRef50_C4Z454 Pseudouridylate synthase n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z454_EUBE2 Length = 245 Score = 247 bits (630), Expect = 4e-64, Method: Composition-based stats. Identities = 66/247 (26%), Positives = 126/247 (51%), Gaps = 5/247 (2%) Query: 9 VYKIALGIEYDGSKYYGWQRQNE---VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHG 65 +Y + IEYDG +Y GWQR + +++ +L + ++++ E + ++ RT+ GVH Sbjct: 1 MYNYRIEIEYDGGRYDGWQRLGKDASTNTIESRLCEIIARMTGETVDMYAGSRTEKGVHA 60 Query: 66 TGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 Q +F+ K +N LP DIAV V + FH++ +A ++ Y Y + Sbjct: 61 LCQTANFKLEKEVKAIEIKNYLNRYLPRDIAVMSVTEADERFHSQLNAKSKIYEYRLDTG 120 Query: 126 RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR 185 + K H ++ D + M +AA G++DF +F + +S++ + + I+V Sbjct: 121 NVANVFRRKYAYHTFDKPDFDAMRKAAGYFEGKHDFKAFTTAK-KSKSTEKTIKKISVEY 179 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 G + I+A+ F+H+M R I+G +++VG + + L ++ ++ A++ GL Sbjct: 180 EGARAYIRIEADDFLHNMARYIIGMMLDVGNGIKKPEDVKRCLDGENIQMSLP-AESYGL 238 Query: 246 YLVAVDY 252 +LV V Y Sbjct: 239 FLVKVVY 245 >UniRef50_Q2NIY3 tRNA pseudouridine synthase A n=4 Tax=Candidatus Phytoplasma RepID=TRUA_AYWBP Length = 243 Score = 245 bits (627), Expect = 9e-64, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 123/243 (50%), Gaps = 3/243 (1%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 + L + YDG+ Y G+Q+Q + ++VQ+ EKAL ++ ++ I F A RTD GVH GQ Sbjct: 4 FFYKLILSYDGTFYCGYQKQPQKKTVQQTFEKALKKMTHQNIPTFAASRTDKGVHSQGQT 63 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 +HF+TT K + +N LP DI VR + +FHAR+SA ++ Y+Y+ L Sbjct: 64 LHFQTTFSLKPKHFQKTLNYLLPPDIRVRQMHFATPNFHARYSAKSKIYQYVFSKKPLN- 122 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 + F + D ++ +A + + G ++F +F + + Q + + + ++ Sbjct: 123 -AFNHHFQIFADKFDFVKITKALKFIEGTHNFFAFTS-ETQPKNFSKTIFQASLKETVHK 180 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 ++ N F+ +M+R +VGSL+E+G + +L A A A+ L L Sbjct: 181 YILVFHGNGFLKYMIRFLVGSLIEIGKNKFSLEQFQAMLLGNKTKKATLLAPAKALVLKK 240 Query: 250 VDY 252 + Y Sbjct: 241 IFY 243 >UniRef50_A0B7V0 tRNA pseudouridine synthase A n=1 Tax=Methanosaeta thermophila PT RepID=TRUA_METTP Length = 267 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 86/244 (35%), Positives = 118/244 (48%), Gaps = 20/244 (8%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 KIAL I Y G +YYG+QRQ +R+V+ + AL ++ AGRTD GV GQV+ Sbjct: 2 KIALKIAYLGDRYYGFQRQPGLRTVESVMRDALLRIGVANGDFCYAGRTDRGVSALGQVI 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 F R A+ +N+ LP D+ P F AR+SA R YRY + Sbjct: 62 DFWIEEDRAYLAFPRVINSLLPSDVWAWARAVAPVGFSARWSALWREYRYFL-------- 113 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 F +D + AA L+G +DF +F + R ++ I+V H V Sbjct: 114 --------FSPDIDLSAVREAAGHLVGTHDFRNFSMSKVD---TVRRIISIDVNAHCGIV 162 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 V D++A F+ +MVR IVG+L +G +P WI ELL A TA EGL L+ V Sbjct: 163 VFDVRAEGFIWNMVRRIVGALELIGIGEKPVDWILELLDPSTPHGA-PTAPPEGLMLMDV 221 Query: 251 DYPD 254 Y D Sbjct: 222 GYSD 225 >UniRef50_Q6NKP7 Pseudouridylate synthase n=14 Tax=Embryophyta RepID=Q6NKP7_ARATH Length = 372 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 85/323 (26%), Positives = 134/323 (41%), Gaps = 72/323 (22%) Query: 3 DQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAG 62 + P V + + IEY G+++ G Q+Q + R+V L++A + +P+ +FC+ RTDAG Sbjct: 48 NPVNPRVQRYLVAIEYIGTRFSGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAG 107 Query: 63 VHGTGQVVHFETTA-----------LRKDAAWTLGVNANLP---GDIAVRWVKTVPDDFH 108 VH V H + + VN L GD+ V V+ VP ++H Sbjct: 108 VHALSNVCHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYH 167 Query: 109 ARFSATARRYRYIIYNHRLRPAVLSK-GVTHFYEPLDAERMHRAAQCLLGENDFTSFRAV 167 AR+ A R Y Y + + ++L K H E L+ M A + L+G +DF+SFRA Sbjct: 168 ARYKAQERTYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFRAA 227 Query: 168 QCQSRTPWRNVMHINVTRHGPYVVV----------------------------------- 192 CQ+++P R++ +N+T Sbjct: 228 GCQAKSPMRSLDELNITEVPSTPYFPSITERTLSNLNNGDPLACSNQPKSETAGVTTNVG 287 Query: 193 DIKAN----------------------AFVHHMVRNIVGSLMEVGAHNQPESWIAELLAA 230 +++ + F++H VR IVG+L VG S + +L A Sbjct: 288 EVEGSTGGDSFGRRRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEA 347 Query: 231 KDRTLAAATAKAEGLYLVAVDYP 253 K + A A A GLYL V Y Sbjct: 348 KTVSAAKPMAPASGLYLARVRYE 370 >UniRef50_UPI0001C30ED3 tRNA pseudouridine synthase A n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C30ED3 Length = 261 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 115/242 (47%), Gaps = 6/242 (2%) Query: 13 ALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEP-ITVFCAGRTDAGVHGTGQVVH 71 L +EYDG + GW RQ R+V++ LE+AL+ V + + AGRTDAGVH Q Sbjct: 9 RLTLEYDGRDFAGWARQPGRRTVEDALERALATVLRRDAVGLTVAGRTDAGVHAWAQEAS 68 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 +E +NA LP D+AV + P F AR AT+R YRY + R R A Sbjct: 69 YEGPPAAPHR-----LNALLPDDVAVIDARPAPPGFSARHDATSRAYRYRVLVRRSRSAH 123 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVV 191 + LD + + A L G +DFT+F + R VMH + G + Sbjct: 124 ERGRALWWPHRLDRDALDACAAALAGTHDFTAFTPTETDHVRFQREVMHASWRADGDMLQ 183 Query: 192 VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVD 251 I+A+AF+ +M R +VG+++EV + LL R A TA GLYL V Sbjct: 184 FSIEADAFMRNMNRVLVGTMLEVAGERRSVEQFTALLDGAPRDRAGVTAPPHGLYLAGVG 243 Query: 252 YP 253 Y Sbjct: 244 YD 245 >UniRef50_Q7NAQ9 tRNA pseudouridine synthase A n=1 Tax=Mycoplasma gallisepticum RepID=TRUA_MYCGA Length = 262 Score = 244 bits (623), Expect = 2e-63, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 110/244 (45%), Gaps = 3/244 (1%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 + + I Y G+K++G+ QN+ +VQ KL+ AL+ + I V +GRTD GVH Q Sbjct: 22 KNVLINISYHGTKFHGYAVQNDYETVQSKLQDALAWIYESKIYVNASGRTDKGVHAINQY 81 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 + F +N ++W+K V +FHARFSA A+ Y Y+I ++ Sbjct: 82 ISFYIDDRISLEKLREILNRYGQNKWYIKWIKEVDRNFHARFSAKAKTYLYLI-DYCANN 140 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 + LD + +A L G ++F SF R + I++ + Sbjct: 141 PLFYDHAWIVNFQLDFNLIEKAIPILEGTHNFWSFSTADKDKG--LRTIHKIDLKQEDNK 198 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 V + I + F+ MVR IVG+L +G + + LL + A A A GLYL Sbjct: 199 VYIYITGDGFLRSMVRMIVGALYNIGIKKYDLNHLKWLLDNPKKGRAITKAPASGLYLYE 258 Query: 250 VDYP 253 V Y Sbjct: 259 VYYE 262 >UniRef50_Q12VJ7 tRNA pseudouridine synthase A n=5 Tax=Archaea RepID=TRUA_METBU Length = 275 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 125/247 (50%), Gaps = 23/247 (9%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEP----ITVFCAGRTDAGVHGT 66 ++AL I Y GS ++G Q Q +V+ +L K L ++ +GRTD+GVH Sbjct: 2 RVALKIAYIGSNFHGSQVQLNDPTVEGELFKVLKELGIMEDPRTANFISSGRTDSGVHAM 61 Query: 67 GQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 GQVV F+T A + A +N+ LPG I VP++F R A +R YRYI+Y + Sbjct: 62 GQVVAFDTDA--PNLAMPRVINSKLPGTIWAWAHAIVPENFDPRRHALSRSYRYILYGEQ 119 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 D ++ A++ LLG +DF++F + +T R V I++ Sbjct: 120 F----------------DISKIRSASKLLLGSHDFSNFSTSRGSKKT-VRIVKRIDIRVS 162 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G +D++AN+F+ +MVR IV +LM VG+ + E W+ +L + A GL Sbjct: 163 GNLTRIDVEANSFLWNMVRKIVAALMMVGSGVRDEEWLGHMLDPESYEEGLEPAHGYGLV 222 Query: 247 LVAVDYP 253 L+ V+YP Sbjct: 223 LMDVNYP 229 >UniRef50_C6HVK9 Pseudouridylate synthase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVK9_9BACT Length = 294 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 82/275 (29%), Positives = 115/275 (41%), Gaps = 20/275 (7%) Query: 1 MSDQQQPP--VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGR 58 M PP +IAL + YDG + GWQ Q +VQ L +AL+ + P+ V +GR Sbjct: 1 MEGPLSPPATSRRIALLLAYDGRDFSGWQVQPNRWTVQGTLGEALATLCRAPVGVTGSGR 60 Query: 59 TDAGVHGTGQVVHFETTA--LRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATAR 116 TDAGV GQV H + +N LPG + V ++V FHAR SA + Sbjct: 61 TDAGVSAWGQVAHADLPEGFSIPVDRLPRILNTRLPGSLRVLDCRSVSSSFHARHSARGK 120 Query: 117 RYRYI-------IYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQC 169 YRY+ + +H L + +F+ P R A+ LG +DF F Sbjct: 121 IYRYVFRHLPASLSHHPLATPFSAPLPPNFFLP----RAREASTFFLGTHDFRHFSVASS 176 Query: 170 QSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELL- 228 R + I +++ + F+H MVR I G L+E G +P I LL Sbjct: 177 LPDDSTRRIDGILWEERCAELILWVTGPGFLHKMVRMIGGYLLEAGEGRRPLEEIPALLR 236 Query: 229 -AAKDRTLAAATAKAEGLYLVAVDYPDRYDLPKPP 262 A A +GL L V Y + P P Sbjct: 237 KGAPPPFRAVEPLPPDGLALARVLYDND---PFDP 268 >UniRef50_B3EQM8 Pseudouridylate synthase n=1 Tax=Chlorobium phaeobacteroides BS1 RepID=B3EQM8_CHLPB Length = 233 Score = 243 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 81/240 (33%), Positives = 119/240 (49%), Gaps = 8/240 (3%) Query: 14 LGIEYDGSKYYGWQRQN-EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHF 72 + IEYDG+ + GWQ+Q V +VQ LE LS++ E + + AGRTD GVH GQV +F Sbjct: 1 MTIEYDGTDFSGWQKQPEGVVTVQGVLETTLSRIVQEEVVMTAAGRTDRGVHARGQVANF 60 Query: 73 ETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVL 132 T + +NA LP + +R ++ VPD FHAR+SA R YRY A+ Sbjct: 61 RTASCLSTGRLLHSLNALLPSTVCIRDMQEVPDSFHARYSALFREYRYFFL--EKPSALG 118 Query: 133 SKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 + + LD +R++R A L+G +DF+++ Q+ + + V + R VV Sbjct: 119 KRYAGVYGGRLDVDRLNRCAGELVGRHDFSAYAKEDAQNGSTFCTVFGASWGRQDEKVVF 178 Query: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 I AN F+ MVR +V + +E G E L + A GL+L V Y Sbjct: 179 RIAANRFLRTMVRFLVSAQLEAGPGELTER-----LRRGNVLKNIVPADPAGLFLWKVLY 233 >UniRef50_O28544 tRNA pseudouridine synthase A n=2 Tax=Archaeoglobus RepID=TRUA_ARCFU Length = 265 Score = 243 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 73/249 (29%), Positives = 119/249 (47%), Gaps = 22/249 (8%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 K A I Y G ++G Q Q + R+V+ ++ AL ++ E + AGRTDAGVH GQV+ Sbjct: 3 KFAFKIAYFGDNFHGSQFQPDQRTVEGEVINALRRLGVENPRLRSAGRTDAGVHAYGQVI 62 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 F + D + +NA LP DI V +DF R A +R Y Y++Y Sbjct: 63 SFYSE----DKIFPRMLNAELPEDITAWAWAKVSEDFDPRR-AKSRVYTYVMYGSDY--- 114 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 D M +A + L+G +DF++F + + R ++ ++ ++ Sbjct: 115 -------------DISAMRKAVKELIGVHDFSNFTKKFGEGESCVREIISADIRADREFI 161 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + +I+ NAF +MVR IV ++ME+G ++ W +LL + A GL L V Sbjct: 162 IFEIEGNAFTWNMVRCIVTAIMEIGKQHRSIEWFRDLLNPEKHKERVEPAPPYGLILKDV 221 Query: 251 DYPD-RYDL 258 Y D +++ Sbjct: 222 KYDDVEFEI 230 >UniRef50_B4U9D9 tRNA pseudouridine synthase A n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=TRUA_HYDS0 Length = 247 Score = 243 bits (620), Expect = 5e-63, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 110/250 (44%), Gaps = 9/250 (3%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKAL------SQVANEPITVFCAGRTDAG 62 + I + G+ Y GWQ Q V ++Q ++E+ L + + I RTD G Sbjct: 1 MKNYKFTISFVGTNYSGWQYQPNVPTIQNEVEEKLYYIVNKKKPIKQKIRAIGCSRTDKG 60 Query: 63 VHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYII 122 VH V + + + +N+ LP DI + ++ VP +F++RF A + Y Y + Sbjct: 61 VHAIEFVFNVKMEFDKDLNFLRKALNSALPKDIKIHNIEEVPLEFNSRFDALKKTYIYKL 120 Query: 123 YNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHIN 182 + Y+P D +M + LG DF F + + + +V +I Sbjct: 121 FFDEKNSPFFQDRAMLVYKPTDLGKMMEISHLFLGYKDFRGFTK-ELEDENGYCSVENIT 179 Query: 183 VTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 P V + I AN F+ +MVR +VG+++ + + L AK ++ TAKA Sbjct: 180 FKVDYPLVEISITANRFLRYMVRRMVGTMLSYAQGLISIDDVNDFLKAK--RVSNHTAKA 237 Query: 243 EGLYLVAVDY 252 GLYL V Y Sbjct: 238 HGLYLKKVYY 247 >UniRef50_D1YY68 Pseudouridylate synthase n=1 Tax=Methanocella paludicola SANAE RepID=D1YY68_METPS Length = 279 Score = 243 bits (620), Expect = 7e-63, Method: Composition-based stats. Identities = 85/245 (34%), Positives = 128/245 (52%), Gaps = 21/245 (8%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQ--VANEPITVFCAGRTDAGVHGTGQ 68 K+A + Y G+ + G Q Q R+V+ +L K L + + E V +GRTDAGVH GQ Sbjct: 14 KVAFKLAYVGTDFSGSQSQPGRRTVEGELRKGLVEKGIIGEKTKVEFSGRTDAGVHALGQ 73 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V+ F +N+ LP D+ V VPDDF R A +R YRY++Y Sbjct: 74 VIAFV--PKNDKLTEPRIINSVLPADMWVYAKAVVPDDFDPRRHAVSRTYRYLLY---AP 128 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + + VT+ +Q G +DFT+F +V+ ++ P R V I+VT+ G Sbjct: 129 DVIERRIVTY-------------SQLFPGTHDFTNFSSVEP-NKNPVRTVKSISVTKRGD 174 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 V+DI+A++F+ +MVR IV L VG++ +P WI ++L + A A GLYL+ Sbjct: 175 MYVIDIEADSFLWNMVRKIVTGLRLVGSNKRPAQWIEQMLKPDEYREGIPPALAAGLYLM 234 Query: 249 AVDYP 253 V+YP Sbjct: 235 KVEYP 239 >UniRef50_C9RMQ6 Pseudouridylate synthase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMQ6_FIBSS Length = 250 Score = 240 bits (612), Expect = 4e-62, Method: Composition-based stats. Identities = 82/251 (32%), Positives = 116/251 (46%), Gaps = 10/251 (3%) Query: 11 KIALGIEYDGSKYYGWQRQN-----EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHG 65 + EY GS +YGWQ QN +VQ LE+ALS PI V +GRTD GVH Sbjct: 2 RYRFRCEYLGSAFYGWQEQNCGGKLRFVTVQSTLEEALSTALRAPIRVVGSGRTDTGVHA 61 Query: 66 TGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 GQ VHF+ VN I +R ++ DF+AR+ A R Y+Y I+ Sbjct: 62 RGQCVHFDFDGELDPQKVVRSVNGLTKRLIRIRDLEPCASDFNARYDAVLRYYQYTIFTR 121 Query: 126 RLRPAVLSKGVTHFYE-PLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT 184 + A++ LD E M R AQ LGE+DF F + ++ + + Sbjct: 122 PV--ALMRDFGWECGSLNLDIEAMGREAQSFLGEHDFIDFCIPRNDGKSTLCTLSEFRLE 179 Query: 185 RHGPY-VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 R + + IK N F+H VR +VG+L +VG PE + ++ K+ A + Sbjct: 180 RLNDWSCMFHIKGNRFLHRQVRAMVGTLFDVGRGRYPEGTVNQIFE-KNFKGERTWAPPQ 238 Query: 244 GLYLVAVDYPD 254 GL L V+Y D Sbjct: 239 GLVLENVEYRD 249 >UniRef50_A9FHM9 Pseudouridylate synthase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FHM9_SORC5 Length = 281 Score = 239 bits (611), Expect = 7e-62, Method: Composition-based stats. Identities = 85/257 (33%), Positives = 122/257 (47%), Gaps = 6/257 (2%) Query: 14 LGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFE 73 L + YDG + G+ RQ + R+V +L AL + + A RTDAGVH Q V F+ Sbjct: 2 LSVAYDGRPFAGFARQRDQRTVSGELLGALRVIDPGIREIRGASRTDAGVHARDQRVAFD 61 Query: 74 TTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLS 133 TTA W L +LP +I +R V F RF + +RYRY+I +R LS Sbjct: 62 TTAPLPPRGWVLATARHLPDEIVIRRAAVVRLGFSPRFESLRKRYRYLILRDLVRDPFLS 121 Query: 134 KGVTHFYEPLD--AERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT---RHGP 188 + D ER A G +DF +FR + T R + + ++ Sbjct: 122 RRAWRVEGITDEAIERARAEALAAKGTHDFAAFRTSADERTTTVRTLYGVELSLDPADPR 181 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 V +D++ NAF+H+MVR +VG+LM+V + IA L++ DR A TA +GLYL Sbjct: 182 VVRIDVEGNAFLHNMVRILVGTLMDVARGHLAPGAIARALSSLDRRDAGITAPPDGLYLE 241 Query: 249 AVDYPDRYDLPKPPMGP 265 + D P GP Sbjct: 242 RIHLRDDGQ-EAWPAGP 257 >UniRef50_Q6AD25 tRNA pseudouridine synthase A n=9 Tax=Bacteria RepID=TRUA_LEIXX Length = 288 Score = 239 bits (610), Expect = 8e-62, Method: Composition-based stats. Identities = 92/280 (32%), Positives = 129/280 (46%), Gaps = 27/280 (9%) Query: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALS---QVANEPITVFCAG 57 M+DQ + L I Y G+ + GW RQ ++R+VQ LE+AL+ + + EP ++ AG Sbjct: 1 MTDQA----TRFRLDIAYQGTDFAGWARQPDLRTVQGTLEEALATIFRCSGEPPSLTVAG 56 Query: 58 RTDAGVHGTGQVVHFET---------------TALRKDAAWTLGVNANL-P-GDIAVRWV 100 RTDAGVH TGQV H + A VN L P D+ V Sbjct: 57 RTDAGVHATGQVAHVDLSPEQVALLRRPHGKREPQLAHDALKRRVNGVLGPVPDVLVSRA 116 Query: 101 KTVPDDFHARFSATARRYRYIIYNH-RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGEN 159 P F ARFSA RRY Y + + LR + LD + M R A +LG + Sbjct: 117 TEAPAGFDARFSALWRRYEYRVADRIALRDPLQRHRTAWVPNTLDVDAMDRGAHGMLGLH 176 Query: 160 DFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV-DIKANAFVHHMVRNIVGSLMEVGAHN 218 DF S+ + + T R + + R V++ ++ A+AF H MVR +VG+ +EVG Sbjct: 177 DFASYCKAR-EGATTIRTLQAFSWRRDAEGVLLGEVAADAFCHSMVRALVGACVEVGEGK 235 Query: 219 QPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDL 258 + L + RT A A GL L V YP +L Sbjct: 236 LRPGDLVTLRDERQRTSAFKVMPARGLTLREVGYPVDAEL 275 >UniRef50_B8JBC1 Pseudouridylate synthase n=4 Tax=Anaeromyxobacter RepID=B8JBC1_ANAD2 Length = 272 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 90/259 (34%), Positives = 115/259 (44%), Gaps = 18/259 (6%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 AL + YDG ++ G+QRQ + +VQ+ LE+AL ++ + A RTDAGVH Q Sbjct: 3 RRSYALRLAYDGGRFRGFQRQPGLPTVQQALEEALERL-GVRAQLHVAARTDAGVHALAQ 61 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 VV F A A G+N LP I V V FHAR SA AR Y Y++ Sbjct: 62 VVSFSARAALDPVALRGGLNEGLPEGILVLDAARVGPSFHARGSAIARTYVYLV--GAPP 119 Query: 129 PAVLSKGVTHFY-----------EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRN 177 P L PLDA M A +GE+DF F Q R R Sbjct: 120 PVGLRPYAWTLPDARAFPDLAEVPPLDAAAMREALGHAVGEHDFVGFARPGEQ-RGTVRT 178 Query: 178 VMHINVTRHG--PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTL 235 ++ V G P V V ++ F+ MVRN+VG+ + G P I LLA + R Sbjct: 179 LLRAEVIEAGWAPLVAVVLEGKGFLRAMVRNLVGTAVAAGLGRAPPDVIRTLLATRGRYR 238 Query: 236 AAATAKAEGLYLVAVDYPD 254 A GL L AV YPD Sbjct: 239 -GVRAPGWGLTLAAVRYPD 256 >UniRef50_A8IW91 Pseudouridylate synthase (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8IW91_CHLRE Length = 239 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 78/235 (33%), Positives = 107/235 (45%), Gaps = 14/235 (5%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFC---AGRTDAGVHGTGQ 68 L + YDG+ Y GWQ Q +VQ KLE AL V E V AGRTD+GVH GQ Sbjct: 5 YRLILAYDGTDYCGWQLQPAAPTVQAKLEAALGTVLREDRGVLGVRAAGRTDSGVHARGQ 64 Query: 69 VVHFET-TALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 V T +NA LP DI V V+ DF S + Y Y I N Sbjct: 65 VRTGLTGRGGLPVDKLAYKLNAVLPPDIRVMGVRRTAPDFSVTCSPIGKTYHYNITNSEA 124 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQ-----SRTPWRNVMHIN 182 + + H +PLD M AA L+G +DFT F + + R P + + ++ Sbjct: 125 HDPLRHRYAYHVRKPLDLAGMRAAAALLVGTHDFTQFSNIGEEGGRPRKRNPVKTLRRMD 184 Query: 183 VTRHGPY-----VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKD 232 V P V ++++ N F++ MVR+I G L+ VG P ++E+L D Sbjct: 185 VVELDPAAFPGGVRIEVEGNGFLYKMVRHISGVLVAVGERKLPPGIVSEMLEVGD 239 >UniRef50_A6Q408 Pseudouridylate synthase n=2 Tax=unclassified Epsilonproteobacteria RepID=A6Q408_NITSB Length = 241 Score = 238 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 74/244 (30%), Positives = 114/244 (46%), Gaps = 6/244 (2%) Query: 11 KIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 +I I YDGS++ G+Q Q +V L AL +V E + +GRTD GVH T QV Sbjct: 2 RIKAVISYDGSRFDGFQIQKHTANTVMHHLYNALQRVGIE-SKIVGSGRTDKGVHATAQV 60 Query: 70 VHFETTALRKD-AAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 +HF+ + +N +L I ++ V VP +FHAR+SA R YRY++ + Sbjct: 61 IHFDLPPFWSELERLQNLLNESLRPYIQIKRVVKVPKEFHARYSAKRRAYRYLL--KKSE 118 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 P+V H LD E + R G +DF F +++ R + + Sbjct: 119 PSVFENAYLHHVSNLDIEIIKRNISLFEGRHDFRYFMKTGSDTKSSVRRIFKTALYEKDD 178 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 V+ + + F+ +R IVG+L+++G I + LA K R + A GLYL Sbjct: 179 LYVLYFEGDGFLRAQIRLIVGALIKLGKGELKPEQIIDQLACKAR-YTSTLAPPNGLYLC 237 Query: 249 AVDY 252 + Y Sbjct: 238 KIIY 241 >UniRef50_D1C2N5 Pseudouridylate synthase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C2N5_SPHTD Length = 271 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 95/263 (36%), Positives = 124/263 (47%), Gaps = 15/263 (5%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 V + + YDGS ++G QRQ VR+VQ LE A ++A EP V AGRTD GVH GQ Sbjct: 7 VRTFRVDLGYDGSAFFGSQRQPGVRTVQGALESAAERLAGEPTRVALAGRTDRGVHAVGQ 66 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V R + A P D+ V + V + FHARFSA R YRY ++ + Sbjct: 67 VASLRIRWARSADELARALMALTPDDLVVYGAREVDERFHARFSARWREYRYFVWEGPV- 125 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSR----TPWRNVMHINVT 184 P ++ V PL+ M+ AA +G DF + R V Sbjct: 126 PTLMRGRVWVVRTPLNLAAMNAAADAFIGRRDFAAVAGAGVGVPWSGIDTTRTVSLARWR 185 Query: 185 ----------RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRT 234 R G + I+A+ F+ HMVRNIVGSL+ VG ++P W ELLA +DR Sbjct: 186 IVDQPFERHDRSGRLLEFRIRADGFLPHMVRNIVGSLVAVGRGDRPIGWTEELLAGRDRR 245 Query: 235 LAAATAKAEGLYLVAVDYPDRYD 257 A A A+GL L V Y D D Sbjct: 246 RGEAPAPAQGLVLWRVAYDDDPD 268 >UniRef50_Q2FT01 Pseudouridylate synthase n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FT01_METHJ Length = 276 Score = 236 bits (603), Expect = 6e-61, Method: Composition-based stats. Identities = 67/267 (25%), Positives = 111/267 (41%), Gaps = 26/267 (9%) Query: 2 SDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQ----VANEPITVFCAG 57 D + ++A I Y G+ ++G Q Q + R+V+ ++E A + + + + +G Sbjct: 3 EDPGKTSQVRLAFRIGYIGTSFFGSQYQPDQRTVEGEIEAACLRAGIITSRQVSRLALSG 62 Query: 58 RTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARR 117 RTD GVH Q++ T +N LP DI V P+ F+ R+ R Sbjct: 63 RTDRGVHAKCQILALST---HNPDLAVRALNGQLPPDIWVSAWAYAPESFYPRYDVIIRT 119 Query: 118 YRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRN 177 YRY P D M AA LG +DF F ++ ++P + Sbjct: 120 YRYYFS----------------RPPSDINAMRDAAGLFLGTHDFRCFARIEP-GKSPVKT 162 Query: 178 VMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAA 237 + I V +++ A +F+ HMVR + GSL +V + + L + + Sbjct: 163 IDRIEVISDENGCRLEVTAQSFLWHMVRCMAGSLYQVSEGEMAIRDLTQYLKGECKNKVK 222 Query: 238 ATAKAEGLYLVAVDYP-DRYDLPKPPM 263 A EGL L V D +++P P + Sbjct: 223 P-APPEGLILWDVQADLDWHEIPAPGL 248 >UniRef50_A8Z5T1 Pseudouridylate synthase n=4 Tax=Flavobacteriales RepID=A8Z5T1_SULMW Length = 250 Score = 236 bits (602), Expect = 7e-61, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 122/245 (49%), Gaps = 4/245 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + L I Y G+ +YGWQ Q + SVQE +E LS + + I + AGRTD GVH Sbjct: 2 RFFLEISYHGASFYGWQIQKKNISVQETIENCLSFLLKKSIKIIGAGRTDTGVHAIQMFA 61 Query: 71 HFET--TALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 HFE + + N+ LP +I + + TV HARF+A +R Y Y I + Sbjct: 62 HFEFYEKKILLYRNFLFKFNSFLPLNIKIINIFTVKKKIHARFTAISRVYEYRISLGKNP 121 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 ++ + + +++ A+ L D++SF +C +T N+ + Sbjct: 122 FSLDISWQWLSKKKIKLNPLNKGAKILKKYKDYSSFCKKKCNYKTYICNIFNAKWHIKNN 181 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + +I+AN ++ +MVR+IVG+L+E+G +L AKDR +A A+GL+L Sbjct: 182 ILYFNIEANRYLRNMVRSIVGTLIELGIGKITIKDFINILYAKDRN--IISAPAKGLFLT 239 Query: 249 AVDYP 253 ++YP Sbjct: 240 KINYP 244 >UniRef50_B1ZVD8 Pseudouridylate synthase n=2 Tax=Opitutaceae RepID=B1ZVD8_OPITP Length = 268 Score = 236 bits (602), Expect = 7e-61, Method: Composition-based stats. Identities = 80/243 (32%), Positives = 123/243 (50%), Gaps = 2/243 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + YDG + GWQ Q SVQ+ +E L ++ + + +GRTDAGVH GQV Sbjct: 10 RWKCVCAYDGGHFAGWQSQVSGASVQDAIEARLREMFGREVRIHGSGRTDAGVHALGQVF 69 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+ + A LP I ++ V V +FHARF A+ +RY Y ++ P Sbjct: 70 HFDAHWRHGPEKLLAALRARLPSAIQIKTVCAVTPEFHARFQASGKRYTYRLHLGDADP- 128 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSR-TPWRNVMHINVTRHGPY 189 + PLD M+ AA L G +DF +F A+ +R R++ ++V R G Sbjct: 129 FTRPYSWPVFRPLDLAAMNAAAAVLRGRHDFRAFTALNGPARVDTVRDLRRLDVRRRGRV 188 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 + + +A+ F++ MVR++VG L+ VG + +LA++ RT TA +GL+LV Sbjct: 189 IRIIAEADGFLYKMVRSLVGVLVAVGEGKLTVHDVRAILASRQRTAVVQTAPPQGLFLVR 248 Query: 250 VDY 252 V Y Sbjct: 249 VFY 251 >UniRef50_Q64EQ0 Pseudouridylate synthase n=2 Tax=environmental samples RepID=Q64EQ0_9ARCH Length = 284 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 80/266 (30%), Positives = 125/266 (46%), Gaps = 31/266 (11%) Query: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNE--VRSVQEKLEKALSQVA----NEPITVF 54 M +++Q +IAL I Y G+ Y+G+Q Q + +++ +L KAL + + Sbjct: 1 MKEERQKE--RIALKIGYIGTNYHGFQIQPRSALPTIEGELFKALKKQGIIEDRKTANYS 58 Query: 55 CAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGD-IAVRWVKTVPDDFHARFSA 113 AGRTD GVH QVV F T+ +N+ LP I V + F+AR A Sbjct: 59 AAGRTDTGVHALAQVVSFVTSNQNTTP---RMINSVLPDGSIWVSAIAKPYSGFNARRDA 115 Query: 114 TARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAV-----Q 168 +R YRY ++ LD RM A++ +G +DF++F + + Sbjct: 116 ISREYRYYLFLQTELD-------------LDITRMREASELFVGTHDFSNFSLLQGNEYE 162 Query: 169 CQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELL 228 + R++ I V P+V++DI+A+ F+ MVR IV +L VG+ + + WI +LL Sbjct: 163 VAGYSTIRDIKRIEVKTKKPFVIIDIEASGFLRKMVRKIVSALRMVGSGMKDKRWIEDLL 222 Query: 229 AAKDRTLAAATAKAEGLYLVAVDYPD 254 + A A GL L V Y D Sbjct: 223 DLR-IKEGIEPAPAFGLVLKNVSYRD 247 >UniRef50_B5Y955 tRNA pseudouridine synthase A n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=TRUA_COPPD Length = 259 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 73/242 (30%), Positives = 116/242 (47%), Gaps = 2/242 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + K A +++ G+ Y G+QRQ ++Q LE LSQ+ N V +GRTDAGVH G Sbjct: 1 MVKYAGLLQFKGTNYAGFQRQKNGTAIQNVLESTLSQINNRATVVRYSGRTDAGVHAWGM 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 F W +N LP D+ V V +F + SA A++Y Y RL Sbjct: 61 PFVFWGREDLSADKWMFILNRMLPKDMRVISVVRTSPEFDPQLSAVAKQYLYCATQERLG 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 P ++ + AA+ L+GE+DF F ++ R + ++V Sbjct: 121 PLWDDFFAYLPNLSIETSAVISAARKLVGEHDFKGFSKKGSSVKSTRRKLYEVSVMFTHS 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + N F++ MVR +VG+L+++G Q ++I E+L+ +A +A A+GL+LV Sbjct: 181 RMYFSFVGNGFLYGMVRLMVGTLLQIGWGKQDVNFIDEVLSG--NAVANYSAPAQGLHLV 238 Query: 249 AV 250 V Sbjct: 239 KV 240 >UniRef50_C7PRM5 Pseudouridylate synthase n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PRM5_CHIPD Length = 250 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 115/244 (47%), Gaps = 3/244 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + + + Y G+ + G+Q Q+ V +VQ ++ A+S + I + RTDAGVH + Sbjct: 2 RYFIEVAYKGTSFGGFQIQDNVETVQSVIDHAISTLMRGAIVTTGSSRTDAGVHARQNFL 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+ + VNA LP D+ +R + V DD H+RF+A +R Y Y +Y + Sbjct: 62 HFDMEQPL-HPQFLYKVNAILPPDVVMRNIYRVADDAHSRFAALSRSYEYTLYMEK--DP 118 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + F L E +H AA L +F +F Q +T N+M + Sbjct: 119 FMRDRGYFFPYTLHPELLHEAASVLREYENFMTFSKRNTQVKTYNCNIMSSEWEVGEDRI 178 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 V + AN F+ MVR +VG+++ VG E + +++ A +GL+L+ V Sbjct: 179 VYRVTANRFLRGMVRGMVGTMLRVGRGKLTMDGFREAIESRNCVNADFAVPPQGLFLMKV 238 Query: 251 DYPD 254 YP+ Sbjct: 239 AYPE 242 >UniRef50_A6EFU7 Pseudouridylate synthase n=1 Tax=Pedobacter sp. BAL39 RepID=A6EFU7_9SPHI Length = 267 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 78/245 (31%), Positives = 111/245 (45%), Gaps = 4/245 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + + I Y G Y GWQ+Q V +VQ LEK LSQV P+ + GRTDA VH + Sbjct: 2 RYFVHIGYHGLHYNGWQKQPGVLNVQGVLEKTLSQVLKRPVEIIGCGRTDAHVHASQFFF 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 H + D +N +LP +IAV V +P HARF A R Y Y ++ ++ P Sbjct: 62 HMDIEEAW-DFDLIFRLNKSLPTNIAVFDVIPMPGLQHARFDAVQRSYDYFLHTYK-NPF 119 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT--RHGP 188 + + + L + M AA L DF F + NVM ++T +G Sbjct: 120 LQGLSSYYLLKDLKFDEMKAAAAILPKYKDFRPFCTSPDKYEHTICNVMSASLTVDPNGD 179 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + I +N F+ M+R I+G L++VG + L K A +GLYL Sbjct: 180 RMRFQISSNRFLSKMIRIIMGQLLKVGRGVLSVDEFEQYLIDKRTPELITPAHPQGLYLS 239 Query: 249 AVDYP 253 V YP Sbjct: 240 KVTYP 244 >UniRef50_D1AVW7 Pseudouridylate synthase n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AVW7_STRM9 Length = 244 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 60/241 (24%), Positives = 109/241 (45%), Gaps = 1/241 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 I + +YDGS +YG QRQ + +VQ +E L NE + + +GRTD GVH QV Sbjct: 3 NIKIIYQYDGSAFYGSQRQKDKVTVQGTIEDILINSFNEKVNMISSGRTDRGVHAKMQVS 62 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 +F K + I + ++ V +++RF R Y +I+ N Sbjct: 63 NFIINKDIKLDIIKSKIEKYSNYAIKILSIEKVDIKYNSRFDCMERTYEFILSNRENITP 122 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQ-SRTPWRNVMHINVTRHGPY 189 K +T +D E+++ + +G+++F++F + + ++ P R + + Sbjct: 123 FNRKYITSINYEIDVEKLNDILKQFIGKHNFSNFSKKENKANKNPIREIYECYSIKKDKN 182 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 + + IK N+F+ MVR I+G+ + + + + +I E + GLYL Sbjct: 183 IHIYIKGNSFLKSMVRIIIGTTLAIYSGKISKHFIKEAFDNPNPNTKKYILDGNGLYLYH 242 Query: 250 V 250 V Sbjct: 243 V 243 >UniRef50_B6WBX6 Pseudouridylate synthase n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6WBX6_9FIRM Length = 242 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 106/222 (47%), Gaps = 1/222 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I L I+YDGS + G+Q Q + R+VQ++LE+A+ +V E + +GRTD+GVH Sbjct: 3 IQNILLKIQYDGSLFEGFQIQKDKRTVQKELEEAIRKVTGEKNRIIASGRTDSGVHANEM 62 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V+F T + + + LP DI K V +FHARFS + Y+Y+I ++ Sbjct: 63 YVNFLTAKDIRADKFHFHLKKYLPADILALSSKKVDKNFHARFSVKTKTYKYVISLEKIL 122 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFR-AVQCQSRTPWRNVMHINVTRHG 187 + + LD +++ + + L GE+DF +F + + R + Sbjct: 123 HPIYRNYMEQITYKLDFDKLKQGMEILKGEHDFRAFMLSEKNDIINTIRKIDDCYYILDN 182 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLA 229 + + KA +F+H+ VR + GSL+E+ Sbjct: 183 NILFLYFKAESFLHNQVRIMAGSLIELSRGKISLDDFKFYFD 224 >UniRef50_B6YTJ2 tRNA pseudouridine synthase A n=7 Tax=Thermococcaceae RepID=TRUA_THEON Length = 267 Score = 233 bits (595), Expect = 4e-60, Method: Composition-based stats. Identities = 68/247 (27%), Positives = 121/247 (48%), Gaps = 24/247 (9%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN----EPITVFCAGRTDAGVHGT 66 ++AL I YDG+ +YG+QRQ +R+V+ ++ +AL+++ E A RTD GV Sbjct: 2 RLALRIAYDGTAFYGFQRQPGLRTVEGEIIRALTKLGIIEDVESSNFKGASRTDRGVSAF 61 Query: 67 GQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 VV F+ A R D +N +L D+ V VP+DFH RF A ++ YRY + + Sbjct: 62 FNVVAFDV-ASRPDLVRPEVLNFHL-KDVWVLGTAEVPEDFHPRFWAKSKTYRYYLIDAG 119 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 D + M A+ +G +DF++F ++ + P R ++ ++ + Sbjct: 120 F----------------DEKAMRECAKLFIGTHDFSAFARLEPH-KNPVRELIRADIIKR 162 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 Y +++++ +F+ M R IV +L G E + ++L + + A+ EGL Sbjct: 163 QGYYIIELEGKSFLWEMARRIVNALRFCGLGILTEEEVEKMLNG-EYSRKIPPARPEGLV 221 Query: 247 LVAVDYP 253 L ++Y Sbjct: 222 LWGIEYE 228 >UniRef50_C6XU55 Pseudouridylate synthase n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XU55_PEDHD Length = 269 Score = 233 bits (595), Expect = 5e-60, Method: Composition-based stats. Identities = 77/251 (30%), Positives = 114/251 (45%), Gaps = 5/251 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + + I Y+G KY GWQ+Q V +VQ +E ALS+V P+ + GRTDA VH + Sbjct: 2 RYFVHIGYNGLKYNGWQKQPGVMNVQGVIENALSKVLKTPVFIIGCGRTDAHVHASQFFF 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 H + D +N LP IA+ V + HARF A R Y Y I+ ++ P Sbjct: 62 HMDVEQDW-DFDLVFRMNKLLPAGIAIFEVIQMDGLQHARFDAVLRSYDYFIHTYK-DPF 119 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHIN--VTRHGP 188 + + + LD ++M +AA L DF +F + NVM + V +G Sbjct: 120 LNGLSSFYLLDKLDFDKMKQAAAILPKYKDFRAFCTSPDKYEHTLCNVMSASLAVDENGD 179 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + I +N F+ M+R I+G L+++G L A +GLYL Sbjct: 180 KLRFQISSNRFLSKMIRIIMGQLLKIGRGVLSVDEFEHYLIYNQTPELITPAHPQGLYLS 239 Query: 249 AVDYPDRYDLP 259 V YP +LP Sbjct: 240 KVTYP-YLNLP 249 >UniRef50_C7LK25 Pseudouridylate synthase n=2 Tax=Candidatus Sulcia muelleri RepID=C7LK25_SULMS Length = 270 Score = 233 bits (594), Expect = 7e-60, Method: Composition-based stats. Identities = 71/267 (26%), Positives = 121/267 (45%), Gaps = 26/267 (9%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + + I Y GS +GWQ Q + S+QE +E LS + + I + AGRTD GVH Sbjct: 2 RFFIEISYKGSSLFGWQIQKKNLSIQETIETCLSFLLKKKIKIIGAGRTDTGVHAIQMFA 61 Query: 71 HFETTALRK------------------------DAAWTLGVNANLPGDIAVRWVKTVPDD 106 HF+ T + + +N+ LP +I + + +V + Sbjct: 62 HFDLTFDLTFDLTFDLTFDLTFDLTFDLTKNHINNHFKSKLNSFLPLNIKIINIFSVKKN 121 Query: 107 FHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRA 166 HARF+A +R Y Y I + + ++ + + + A L DF+SF Sbjct: 122 IHARFNAISRVYEYRISLSKDPFLFQTSWQWLSKNQIELKILKKGANILKKYKDFSSFCK 181 Query: 167 VQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAE 226 + + + + I+AN F+ +MVR++VG+L+E+G + Sbjct: 182 EKSKK--NLCEISTAKWILKKNILYFRIEANRFLRNMVRSLVGTLIELGIKKITIKDFIK 239 Query: 227 LLAAKDRTLAAATAKAEGLYLVAVDYP 253 ++ AK+R LA TA A+GL+L+ ++YP Sbjct: 240 IIEAKNRNLAGITAPAKGLFLIKINYP 266 >UniRef50_B5CR77 Pseudouridylate synthase n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR77_9FIRM Length = 242 Score = 232 bits (593), Expect = 9e-60, Method: Composition-based stats. Identities = 66/243 (27%), Positives = 118/243 (48%), Gaps = 4/243 (1%) Query: 11 KIALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 + ++YDG++Y GW + V++V KLE+ L+++ +P+T+ A RT+ VH + QV Sbjct: 3 NFKMTLQYDGTRYLGWTKNEKSVKTVSYKLEQVLTRLLGQPVTLHAAVRTEPCVHASCQV 62 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 FE +N LP DI V + V F A A Y Y + + Sbjct: 63 CSFEADLPFSPEVLKKQMNQYLPMDIKVLSLLPVSGRFRADLGIRAYTYEYNVCTASVYD 122 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 S+ HF+ D M +AA CL+G++DF SF V+ + + + +++++ ++ Sbjct: 123 VFHSRYQAHFFPAPDLALMKQAASCLIGKHDFQSFSPVR-KKKGTKKELLYLDFIQNKEQ 181 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 + + ANAF+ M + IVG+L+E+G + I + + ++GL+L Sbjct: 182 LSFRLTANAFLPSMPQLIVGTLLEIGQGKRSPDCILSIFEGNE--TPGNFCPSDGLFLTE 239 Query: 250 VDY 252 + Y Sbjct: 240 IQY 242 >UniRef50_Q0W2P8 tRNA pseudouridine synthase A n=1 Tax=uncultured methanogenic archaeon RC-I RepID=TRUA_UNCMA Length = 266 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 85/245 (34%), Positives = 128/245 (52%), Gaps = 22/245 (8%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPI--TVFCAGRTDAGVHGTGQ 68 K AL I Y G+ +YG Q Q + +V+ +L KAL + + + AGRTDAGVH GQ Sbjct: 2 KTALKIAYVGTNFYGSQAQPGLPTVESELRKALEEAGAIKLGTKIAMAGRTDAGVHALGQ 61 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 VV FE +N+ LP D+ VPDDF R AT+R YRYI+Y Sbjct: 62 VVAFE--QADPKLTAPRIINSKLPKDLWAYARAEVPDDFDPRRHATSREYRYILY----A 115 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 P V+ + R+ + LG +DFT+F +V+ + P R V +++ + G Sbjct: 116 PDVIER------------RLKECSSRFLGTHDFTNFSSVEA-GKYPVRTVTRLDIAKRGD 162 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + ++DI+A++F+ +MVR IV +L VG + +P+ WI ++ + R A GLYL Sbjct: 163 FYIIDIEADSFLWNMVRKIVTALRLVGENKRPDGWIEKMFDPEYREGIPPAAPG-GLYLS 221 Query: 249 AVDYP 253 V+Y Sbjct: 222 RVNYD 226 >UniRef50_D2VLE9 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VLE9_NAEGR Length = 430 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 65/264 (24%), Positives = 99/264 (37%), Gaps = 35/264 (13%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVR-SVQEKLEKALSQVA----NEPITVFCAGRTDAGVH 64 IAL I Y G Y G +Q +++ L +AL + + GRTD GV Sbjct: 68 RHIALKIAYLGFNYQGLSKQLHTPNTIEHHLFEALKTLKLIEHEDNCEFTKCGRTDKGVS 127 Query: 65 GTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYN 124 GQVV F K + +N+ LP DI V V DF ARF R Y+Y Sbjct: 128 ALGQVVSFNCRYNPKKNDYVRLINSLLPDDIRVLAWCPVSKDFDARFGCLQRTYKYYF-- 185 Query: 125 HRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT 184 + L+ E+M +AA +GE+DF +F + + R ++ + + Sbjct: 186 --------------IRQNLNIEKMKQAAAHFVGEHDFRNFCKINEEVTNFRRRILSMEII 231 Query: 185 RHG------------PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKD 232 + + + +F+ H VR + L +G + S I ELL + Sbjct: 232 KSDLLHQQHGNDEYFEIYEIVVCGTSFLWHQVRCMTAILFLIGEGKEEPSVIPELLDIEK 291 Query: 233 RTLAA--ATAKAEGLYLVAVDYPD 254 A L L + D Sbjct: 292 YKARPVYHIASEFPLVLYDCVFED 315 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q15VG2 tRNA pseudouridine synthase A n=12 Tax=Gammaprot... 335 1e-90 UniRef50_B0KCN3 tRNA pseudouridine synthase A n=9 Tax=Clostridia... 332 5e-90 UniRef50_A6TWE8 Pseudouridylate synthase n=8 Tax=Clostridiales R... 327 2e-88 UniRef50_C4Z2W2 Pseudouridylate synthase n=10 Tax=Firmicutes Rep... 325 8e-88 UniRef50_C6D4K9 Pseudouridylate synthase n=1 Tax=Paenibacillus s... 324 2e-87 UniRef50_A4XKB7 tRNA pseudouridine synthase A n=11 Tax=Clostridi... 324 3e-87 UniRef50_Q8XLQ0 tRNA pseudouridine synthase A 1 n=12 Tax=Clostri... 322 9e-87 UniRef50_B5CQB6 Pseudouridylate synthase n=9 Tax=Bacteria RepID=... 322 1e-86 UniRef50_B8I814 tRNA pseudouridine synthase A n=19 Tax=Clostridi... 320 2e-86 UniRef50_B5EFM8 tRNA pseudouridine synthase A n=4 Tax=Bacteria R... 319 6e-86 UniRef50_B3PFN7 Pseudouridylate synthase n=2 Tax=Gammaproteobact... 319 8e-86 UniRef50_C6J6C3 Pseudouridylate synthase n=2 Tax=Bacillales RepI... 319 9e-86 UniRef50_B9M6W5 tRNA pseudouridine synthase A n=8 Tax=Deltaprote... 315 8e-85 UniRef50_A1U0X5 Pseudouridylate synthase n=7 Tax=Bacteria RepID=... 315 1e-84 UniRef50_Q21IY8 Pseudouridylate synthase n=2 Tax=Gammaproteobact... 314 2e-84 UniRef50_Q2LUS6 Pseudouridylate synthase n=5 Tax=Bacteria RepID=... 314 2e-84 UniRef50_A5WGT0 Pseudouridylate synthase n=6 Tax=Moraxellaceae R... 314 2e-84 UniRef50_Q3A3B5 tRNA pseudouridine synthase A n=6 Tax=Desulfurom... 314 2e-84 UniRef50_Q63H59 tRNA pseudouridine synthase A 1 n=102 Tax=Bacill... 312 6e-84 UniRef50_Q5WLN0 tRNA pseudouridine synthase A n=15 Tax=Bacillale... 312 7e-84 UniRef50_D2RNY1 tRNA pseudouridine synthase A n=2 Tax=Acidaminoc... 312 7e-84 UniRef50_Q31HH6 tRNA pseudouridine synthase A n=4 Tax=Gammaprote... 312 1e-83 UniRef50_A3ZQX0 Pseudouridylate synthase n=1 Tax=Blastopirellula... 311 2e-83 UniRef50_UPI0001C37706 tRNA pseudouridine synthase A n=1 Tax=Rum... 311 2e-83 UniRef50_A5N4T0 tRNA pseudouridine synthase A n=25 Tax=Clostridi... 310 3e-83 UniRef50_A0LIV1 Pseudouridylate synthase n=1 Tax=Syntrophobacter... 310 4e-83 UniRef50_A7NCA0 tRNA pseudouridine synthase A n=19 Tax=Francisel... 308 1e-82 UniRef50_C4V5N7 Pseudouridylate synthase n=1 Tax=Selenomonas flu... 308 1e-82 UniRef50_C4Z854 Pseudouridylate synthase n=3 Tax=Clostridiales R... 308 2e-82 UniRef50_Q1Q1P7 Pseudouridylate synthase n=1 Tax=Candidatus Kuen... 307 2e-82 UniRef50_B0MNN1 Pseudouridylate synthase n=1 Tax=Eubacterium sir... 307 4e-82 UniRef50_UPI0001BCC844 tRNA pseudouridine synthase A n=1 Tax=Sel... 306 5e-82 UniRef50_A8ZTL2 Pseudouridylate synthase n=1 Tax=Desulfococcus o... 305 7e-82 UniRef50_C8WTU3 Pseudouridylate synthase n=2 Tax=Alicyclobacillu... 305 8e-82 UniRef50_A0L9F6 Pseudouridylate synthase n=1 Tax=Magnetococcus s... 305 8e-82 UniRef50_Q6FEV2 tRNA pseudouridine synthase A n=383 Tax=Proteoba... 305 9e-82 UniRef50_C6PXV6 Pseudouridylate synthase n=2 Tax=Clostridium Rep... 305 1e-81 UniRef50_B8D8Z8 tRNA pseudouridine synthase A n=6 Tax=Enterobact... 304 2e-81 UniRef50_C9KPE0 Pseudouridylate synthase n=2 Tax=Veillonellaceae... 304 2e-81 UniRef50_D0LWH9 Pseudouridylate synthase n=2 Tax=Deltaproteobact... 303 4e-81 UniRef50_A7VWN0 Pseudouridylate synthase n=2 Tax=Clostridium Rep... 303 4e-81 UniRef50_UPI0001C35668 tRNA pseudouridine synthase A n=1 Tax=Clo... 303 5e-81 UniRef50_D2R418 tRNA pseudouridine synthase A n=1 Tax=Pirellula ... 302 7e-81 UniRef50_Q0AUL4 tRNA pseudouridine synthase A n=1 Tax=Syntrophom... 302 8e-81 UniRef50_A7VFR5 Pseudouridylate synthase n=7 Tax=Clostridiales R... 302 8e-81 UniRef50_B7K222 tRNA pseudouridine synthase A n=12 Tax=Cyanobact... 302 9e-81 UniRef50_Q0AGX7 tRNA pseudouridine synthase A n=26 Tax=Proteobac... 302 1e-80 UniRef50_Q1K346 Pseudouridylate synthase n=1 Tax=Desulfuromonas ... 301 1e-80 UniRef50_B9TJ99 Pseudouridylate synthase n=4 Tax=cellular organi... 300 3e-80 UniRef50_UPI0001973C8C tRNA pseudouridine synthase A n=1 Tax=Clo... 300 3e-80 UniRef50_C0EKI9 Pseudouridylate synthase n=6 Tax=Neisseriaceae R... 300 4e-80 UniRef50_B0TC90 Pseudouridylate synthase n=3 Tax=Clostridiales R... 299 5e-80 UniRef50_UPI00016C512A tRNA pseudouridine synthase A n=1 Tax=Gem... 299 5e-80 UniRef50_Q250I7 Pseudouridylate synthase n=2 Tax=Desulfitobacter... 298 1e-79 UniRef50_C0X1G0 Pseudouridylate synthase n=36 Tax=Enterococcus R... 298 1e-79 UniRef50_Q813Z9 tRNA pseudouridine synthase A 2 n=77 Tax=Firmicu... 298 1e-79 UniRef50_A8W1A9 Pseudouridylate synthase n=2 Tax=Bacillus RepID=... 298 1e-79 UniRef50_Q1QY44 Pseudouridylate synthase n=1 Tax=Chromohalobacte... 297 2e-79 UniRef50_A6NVS7 Pseudouridylate synthase n=1 Tax=Bacteroides cap... 297 2e-79 UniRef50_C0GG81 Pseudouridylate synthase n=1 Tax=Dethiobacter al... 297 2e-79 UniRef50_Q6ANM1 tRNA pseudouridine synthase A 1 n=1 Tax=Desulfot... 297 3e-79 UniRef50_B1I1B5 tRNA pseudouridine synthase A n=5 Tax=Clostridia... 296 4e-79 UniRef50_A1AXN3 Pseudouridylate synthase n=3 Tax=Bacteria RepID=... 296 4e-79 UniRef50_Q2RNZ9 tRNA pseudouridine synthase A n=113 Tax=Alphapro... 296 5e-79 UniRef50_B1XV49 tRNA pseudouridine synthase A n=97 Tax=Betaprote... 296 5e-79 UniRef50_B9JQX0 tRNA pseudouridine synthase A n=19 Tax=Alphaprot... 296 5e-79 UniRef50_A7HKV8 tRNA pseudouridine synthase A n=11 Tax=Thermotog... 296 7e-79 UniRef50_B3E0A0 tRNA pseudouridine synthase A n=1 Tax=Methylacid... 295 9e-79 UniRef50_Q7TU07 tRNA pseudouridine synthase A n=1 Tax=Rhodopirel... 295 1e-78 UniRef50_D1VSK1 Pseudouridylate synthase n=1 Tax=Peptoniphilus l... 294 2e-78 UniRef50_Q45557 tRNA pseudouridine synthase A n=5 Tax=Firmicutes... 294 2e-78 UniRef50_B9XDA1 Pseudouridylate synthase n=1 Tax=bacterium Ellin... 294 2e-78 UniRef50_C5RHY1 Pseudouridylate synthase n=1 Tax=Clostridium cel... 293 3e-78 UniRef50_A4BHD0 Pseudouridylate synthase n=1 Tax=Reinekea blande... 293 4e-78 UniRef50_Q03PY8 tRNA pseudouridine synthase A n=21 Tax=Lactobaci... 293 6e-78 UniRef50_C1SLX8 Pseudouridylate synthase n=1 Tax=Denitrovibrio a... 292 6e-78 UniRef50_C8NBU9 Pseudouridylate synthase n=1 Tax=Cardiobacterium... 292 7e-78 UniRef50_B0GAG0 Pseudouridylate synthase n=1 Tax=Dorea formicige... 292 1e-77 UniRef50_Q8K9U4 tRNA pseudouridine synthase A n=2 Tax=Buchnera a... 291 2e-77 UniRef50_A9WH95 tRNA pseudouridine synthase A n=5 Tax=Chloroflex... 290 2e-77 UniRef50_Q6MEE7 tRNA pseudouridine synthase A 1 n=2 Tax=Parachla... 290 2e-77 UniRef50_A5I338 Pseudouridylate synthase n=17 Tax=Firmicutes Rep... 290 3e-77 UniRef50_A8SWG9 Pseudouridylate synthase n=1 Tax=Coprococcus eut... 290 3e-77 UniRef50_C5NXQ0 Pseudouridylate synthase n=1 Tax=Gemella haemoly... 290 3e-77 UniRef50_C9LN87 Pseudouridylate synthase n=1 Tax=Dialister invis... 290 3e-77 UniRef50_A9KR47 Pseudouridylate synthase n=1 Tax=Clostridium phy... 289 6e-77 UniRef50_B9DM46 tRNA pseudouridine synthase A n=6 Tax=Staphyloco... 289 7e-77 UniRef50_UPI0000E87E98 tRNA pseudouridine synthase A n=1 Tax=Met... 289 8e-77 UniRef50_C1XI54 Pseudouridylate synthase n=1 Tax=Meiothermus rub... 288 9e-77 UniRef50_C2DZZ6 Pseudouridylate synthase n=9 Tax=Lactobacillus R... 288 1e-76 UniRef50_A8SNL4 Pseudouridylate synthase n=1 Tax=Parvimonas micr... 288 1e-76 UniRef50_B2IEW0 tRNA pseudouridine synthase A n=2 Tax=Alphaprote... 288 2e-76 UniRef50_C2KUD3 Pseudouridylate synthase n=1 Tax=Oribacterium si... 287 2e-76 UniRef50_Q253C0 tRNA pseudouridine synthase A n=12 Tax=Chlamydia... 287 2e-76 UniRef50_A8R9F5 Pseudouridylate synthase n=2 Tax=unclassified Er... 287 2e-76 UniRef50_A9KLD6 Pseudouridylate synthase n=2 Tax=Clostridium Rep... 287 2e-76 UniRef50_Q7MBB9 tRNA pseudouridine synthase A n=1 Tax=Gloeobacte... 287 3e-76 UniRef50_B5CS63 Pseudouridylate synthase n=6 Tax=Clostridiales R... 287 4e-76 UniRef50_Q5FPX3 tRNA pseudouridine synthase A n=1 Tax=Gluconobac... 286 4e-76 UniRef50_B9KIN8 tRNA pseudouridine synthase A n=5 Tax=Anaplasmat... 286 4e-76 UniRef50_A7C1F2 Pseudouridylate synthase n=1 Tax=Beggiatoa sp. P... 286 6e-76 UniRef50_A8GUM4 tRNA pseudouridine synthase A n=19 Tax=Alphaprot... 285 7e-76 UniRef50_Q73KE3 tRNA pseudouridine synthase A n=1 Tax=Treponema ... 285 8e-76 UniRef50_Q89ZY4 tRNA pseudouridine synthase A n=12 Tax=Bacteroid... 285 8e-76 UniRef50_Q2JUJ7 Pseudouridylate synthase n=2 Tax=Synechococcus R... 285 9e-76 UniRef50_Q031N1 tRNA pseudouridine synthase A n=66 Tax=Streptoco... 285 1e-75 UniRef50_B3QUL0 Pseudouridylate synthase n=1 Tax=Chloroherpeton ... 284 2e-75 UniRef50_C4XPZ9 tRNA pseudouridine synthase A n=4 Tax=Desulfovib... 284 2e-75 UniRef50_C1ZAN4 Pseudouridylate synthase n=1 Tax=Planctomyces li... 284 2e-75 UniRef50_B6BU98 Pseudouridylate synthase n=1 Tax=beta proteobact... 284 2e-75 UniRef50_D1BP31 Pseudouridylate synthase n=3 Tax=Veillonella Rep... 284 3e-75 UniRef50_Q6G7A2 tRNA pseudouridine synthase A n=59 Tax=Staphyloc... 283 3e-75 UniRef50_C5T803 Pseudouridylate synthase n=2 Tax=Comamonadaceae ... 283 3e-75 UniRef50_Q3A9U9 Pseudouridylate synthase n=1 Tax=Carboxydothermu... 283 5e-75 UniRef50_Q04BY4 tRNA pseudouridine synthase A n=79 Tax=Firmicute... 282 7e-75 UniRef50_B5ZN21 tRNA pseudouridine synthase A n=21 Tax=Alphaprot... 282 9e-75 UniRef50_C6LCX6 Pseudouridylate synthase n=2 Tax=Lachnospiraceae... 282 9e-75 UniRef50_B7A9H2 Pseudouridylate synthase n=2 Tax=Thermaceae RepI... 281 2e-74 UniRef50_Q8D2P5 tRNA pseudouridine synthase A n=1 Tax=Wiggleswor... 281 2e-74 UniRef50_C0QZT8 tRNA pseudouridine synthase A n=2 Tax=Brachyspir... 281 2e-74 UniRef50_Q0F2X2 Pseudouridylate synthase n=1 Tax=Mariprofundus f... 280 3e-74 UniRef50_B5YGE4 tRNA pseudouridine synthase A n=1 Tax=Thermodesu... 279 6e-74 UniRef50_A9BNH5 tRNA pseudouridine synthase A n=9 Tax=cellular o... 279 6e-74 UniRef50_Q88XU9 tRNA pseudouridine synthase A n=6 Tax=Lactobacil... 279 6e-74 UniRef50_B9Y957 Pseudouridylate synthase n=1 Tax=Holdemania fili... 279 7e-74 UniRef50_C4GC36 Pseudouridylate synthase n=1 Tax=Shuttleworthia ... 279 7e-74 UniRef50_D1N376 Pseudouridylate synthase n=1 Tax=Victivallis vad... 279 8e-74 UniRef50_B0N4B2 Pseudouridylate synthase n=4 Tax=Bacteria RepID=... 279 8e-74 UniRef50_A5FAV0 Pseudouridylate synthase n=14 Tax=Bacteroidetes ... 278 1e-73 UniRef50_B9KZV8 Pseudouridylate synthase n=1 Tax=Thermomicrobium... 278 1e-73 UniRef50_Q6MQH6 tRNA pseudouridine synthase A n=1 Tax=Bdellovibr... 278 1e-73 UniRef50_D1XYC0 Pseudouridylate synthase n=2 Tax=Prevotella RepI... 278 1e-73 UniRef50_C5CGS8 tRNA pseudouridine synthase A n=1 Tax=Kosmotoga ... 278 1e-73 UniRef50_Q72I65 tRNA pseudouridine synthase A n=2 Tax=Thermus th... 278 2e-73 UniRef50_A5KLX7 Pseudouridylate synthase n=3 Tax=Clostridiales R... 277 2e-73 UniRef50_B0S2E1 tRNA pseudouridine synthase A n=3 Tax=Bacteria R... 277 3e-73 UniRef50_C0GLA2 Pseudouridylate synthase n=1 Tax=Desulfonatronos... 276 7e-73 UniRef50_A6LDA7 tRNA pseudouridine synthase A n=46 Tax=Bacteria ... 276 7e-73 UniRef50_A9B439 Pseudouridylate synthase n=1 Tax=Herpetosiphon a... 275 1e-72 UniRef50_Q11XU3 Pseudouridylate synthase n=1 Tax=Cytophaga hutch... 275 1e-72 UniRef50_D1B5U1 Pseudouridylate synthase n=1 Tax=Thermanaerovibr... 274 2e-72 UniRef50_D0RR37 Pseudouridylate synthase n=1 Tax=alpha proteobac... 274 2e-72 UniRef50_A8S765 Pseudouridylate synthase n=4 Tax=Ruminococcaceae... 274 2e-72 UniRef50_Q28LN3 tRNA pseudouridine synthase A n=16 Tax=Rhodobact... 273 3e-72 UniRef50_A1A6J3 Pseudouridylate synthase n=14 Tax=Magnoliophyta ... 273 4e-72 UniRef50_Q1GE00 tRNA pseudouridine synthase A n=2 Tax=Ruegeria R... 273 5e-72 UniRef50_C8X4C1 Pseudouridylate synthase n=1 Tax=Desulfohalobium... 272 6e-72 UniRef50_Q6MDE3 tRNA pseudouridine synthase A 2 n=2 Tax=Parachla... 272 7e-72 UniRef50_B7AQ15 Pseudouridylate synthase n=1 Tax=Bacteroides pec... 272 8e-72 UniRef50_B2A4Q5 tRNA pseudouridine synthase A n=1 Tax=Natranaero... 271 1e-71 UniRef50_B5JG47 Pseudouridylate synthase n=1 Tax=Verrucomicrobia... 271 2e-71 UniRef50_Q2LWJ8 Pseudouridylate synthase n=1 Tax=Syntrophus acid... 271 2e-71 UniRef50_A5CET3 tRNA pseudouridine synthase A n=2 Tax=Orientia t... 270 3e-71 UniRef50_C1TLE9 Pseudouridylate synthase n=3 Tax=Synergistaceae ... 270 3e-71 UniRef50_D1AG36 Pseudouridylate synthase n=1 Tax=Sebaldella term... 270 3e-71 UniRef50_C0QUR7 Pseudouridylate synthase n=4 Tax=Hydrogenotherma... 270 3e-71 UniRef50_B5YDX5 tRNA pseudouridine synthase A n=2 Tax=Dictyoglom... 269 5e-71 UniRef50_UPI0001BC54DA tRNA pseudouridine synthase A n=2 Tax=Fus... 269 8e-71 UniRef50_Q3Z951 Pseudouridylate synthase n=5 Tax=Dehalococcoides... 269 8e-71 UniRef50_B0SC03 tRNA pseudouridine synthase A n=2 Tax=Leptospira... 269 8e-71 UniRef50_A6GZH6 Pseudouridylate synthase n=2 Tax=Bacteroidetes R... 268 9e-71 UniRef50_Q7TU31 tRNA pseudouridine synthase A n=7 Tax=Prochloroc... 268 1e-70 UniRef50_C8P3N2 Pseudouridylate synthase n=1 Tax=Erysipelothrix ... 268 1e-70 UniRef50_Q5HBA4 tRNA pseudouridine synthase A n=13 Tax=Rickettsi... 268 1e-70 UniRef50_D1PV12 Pseudouridylate synthase n=1 Tax=Prevotella berg... 268 2e-70 UniRef50_O66953 tRNA pseudouridine synthase A n=2 Tax=Aquificace... 267 3e-70 UniRef50_Q1AU61 Pseudouridylate synthase n=1 Tax=Rubrobacter xyl... 267 3e-70 UniRef50_B0VGH4 Pseudouridylate synthase n=1 Tax=Candidatus Cloa... 266 6e-70 UniRef50_C2MC62 Pseudouridylate synthase n=1 Tax=Porphyromonas u... 265 9e-70 UniRef50_A4EA88 Pseudouridylate synthase n=1 Tax=Collinsella aer... 265 1e-69 UniRef50_D0WG96 Pseudouridylate synthase n=1 Tax=Slackia exigua ... 265 1e-69 UniRef50_B2UNB6 tRNA pseudouridine synthase A n=1 Tax=Akkermansi... 264 3e-69 UniRef50_Q01WL4 tRNA pseudouridine synthase A n=3 Tax=Acidobacte... 263 3e-69 UniRef50_Q2JFE6 tRNA pseudouridine synthase A n=44 Tax=Actinomyc... 263 3e-69 UniRef50_C7RE26 Pseudouridylate synthase n=3 Tax=Anaerococcus Re... 263 3e-69 UniRef50_A4CM73 Pseudouridylate synthase n=2 Tax=Flavobacteriale... 262 8e-69 UniRef50_C4F9Q5 Pseudouridylate synthase n=3 Tax=Coriobacteriace... 262 9e-69 UniRef50_C8W7W7 Pseudouridylate synthase n=4 Tax=Coriobacteriace... 261 2e-68 UniRef50_C7ND49 Pseudouridylate synthase n=3 Tax=Leptotrichia Re... 260 3e-68 UniRef50_D2MMG6 tRNA pseudouridine synthase A n=1 Tax=Bulleidia ... 260 3e-68 UniRef50_C0VZ39 Pseudouridylate synthase n=1 Tax=Actinomyces col... 259 6e-68 UniRef50_C5RIE6 Pseudouridylate synthase n=1 Tax=Clostridium cel... 259 8e-68 UniRef50_Q30XU3 tRNA pseudouridine synthase A n=5 Tax=Desulfovib... 258 1e-67 UniRef50_B5HPZ6 Pseudouridylate synthase n=1 Tax=Streptomyces sv... 258 1e-67 UniRef50_UPI00016BFD9D tRNA pseudouridine synthase A n=1 Tax=Epu... 258 1e-67 UniRef50_Q72DL8 tRNA pseudouridine synthase A n=4 Tax=Desulfovib... 258 2e-67 UniRef50_C7HSK8 Pseudouridylate synthase n=1 Tax=Anaerococcus va... 258 2e-67 UniRef50_B1W3X8 tRNA pseudouridine synthase A n=16 Tax=Actinomyc... 258 2e-67 UniRef50_Q9RS37 tRNA pseudouridine synthase A n=3 Tax=Deinococcu... 257 3e-67 UniRef50_A6DH96 Pseudouridylate synthase n=1 Tax=Lentisphaera ar... 257 3e-67 UniRef50_A9RTE3 Pseudouridylate synthase n=1 Tax=Physcomitrella ... 256 6e-67 UniRef50_B4D9U5 Pseudouridylate synthase n=2 Tax=Verrucomicrobia... 256 6e-67 UniRef50_C3JAB4 Pseudouridylate synthase (Fragment) n=2 Tax=Bact... 256 7e-67 UniRef50_Q0SPF2 tRNA pseudouridine synthase A n=21 Tax=Borrelia ... 255 1e-66 UniRef50_C6WLZ4 Pseudouridylate synthase n=4 Tax=Actinomycetales... 255 1e-66 UniRef50_D2QH82 tRNA pseudouridine synthase A n=1 Tax=Spirosoma ... 255 1e-66 UniRef50_B6YQE4 tRNA pseudouridine synthase A n=1 Tax=Candidatus... 255 2e-66 UniRef50_C3WLS9 Pseudouridylate synthase n=2 Tax=Fusobacterium R... 254 2e-66 UniRef50_A9HKQ8 Pseudouridylate synthase n=4 Tax=Alphaproteobact... 253 3e-66 UniRef50_A4SAH5 Pseudouridylate synthase n=4 Tax=Mamiellales Rep... 253 4e-66 UniRef50_Q7NAQ9 tRNA pseudouridine synthase A n=1 Tax=Mycoplasma... 253 5e-66 UniRef50_Q8R601 tRNA pseudouridine synthase A n=14 Tax=Fusobacte... 252 1e-65 UniRef50_Q3AW68 tRNA pseudouridine synthase A n=39 Tax=cellular ... 251 1e-65 UniRef50_B4U9D9 tRNA pseudouridine synthase A n=1 Tax=Hydrogenob... 251 1e-65 UniRef50_Q4FNF9 tRNA pseudouridine synthase A n=5 Tax=Bacteria R... 251 2e-65 UniRef50_B0G612 Pseudouridylate synthase n=7 Tax=Bacteria RepID=... 251 2e-65 UniRef50_A9NEH2 Pseudouridylate synthase n=1 Tax=Acholeplasma la... 250 4e-65 UniRef50_C1A3U6 Pseudouridylate synthase n=1 Tax=Gemmatimonas au... 250 5e-65 UniRef50_A0LRQ0 Pseudouridylate synthase n=2 Tax=Actinomycetales... 249 8e-65 UniRef50_C2D958 Pseudouridylate synthase n=1 Tax=Atopobium vagin... 249 8e-65 UniRef50_C4Z454 Pseudouridylate synthase n=1 Tax=Eubacterium eli... 249 9e-65 UniRef50_A1BFF0 tRNA pseudouridine synthase A n=10 Tax=Chlorobia... 248 2e-64 UniRef50_C4DMY7 Pseudouridylate synthase n=1 Tax=Stackebrandtia ... 248 2e-64 UniRef50_B3EU82 Pseudouridylate synthase n=1 Tax=Candidatus Amoe... 246 6e-64 UniRef50_Q6A6S8 tRNA pseudouridine synthase A n=6 Tax=Actinomyce... 246 6e-64 UniRef50_O28544 tRNA pseudouridine synthase A n=2 Tax=Archaeoglo... 246 8e-64 UniRef50_C2KS13 Pseudouridylate synthase n=2 Tax=Mobiluncus muli... 246 8e-64 UniRef50_Q2NIY3 tRNA pseudouridine synthase A n=4 Tax=Candidatus... 245 1e-63 UniRef50_A6FXP9 Pseudouridylate synthase n=1 Tax=Plesiocystis pa... 245 1e-63 UniRef50_D2VLE9 Predicted protein n=1 Tax=Naegleria gruberi RepI... 245 2e-63 UniRef50_C2BS51 Pseudouridylate synthase n=1 Tax=Mobiluncus curt... 245 2e-63 UniRef50_C6HVK9 Pseudouridylate synthase n=1 Tax=Leptospirillum ... 244 2e-63 UniRef50_B3EQM8 Pseudouridylate synthase n=1 Tax=Chlorobium phae... 243 6e-63 UniRef50_Q6AD25 tRNA pseudouridine synthase A n=9 Tax=Bacteria R... 242 8e-63 UniRef50_B8JBC1 Pseudouridylate synthase n=4 Tax=Anaeromyxobacte... 242 1e-62 UniRef50_UPI0001C30ED3 tRNA pseudouridine synthase A n=1 Tax=Con... 241 1e-62 UniRef50_A6Q408 Pseudouridylate synthase n=2 Tax=unclassified Ep... 240 3e-62 UniRef50_B6H2I9 Pc13g14530 protein n=1 Tax=Penicillium chrysogen... 240 4e-62 UniRef50_D1C2N5 Pseudouridylate synthase n=1 Tax=Sphaerobacter t... 240 6e-62 UniRef50_Q6NKP7 Pseudouridylate synthase n=14 Tax=Embryophyta Re... 239 6e-62 UniRef50_D1AVW7 Pseudouridylate synthase n=1 Tax=Streptobacillus... 239 7e-62 UniRef50_A0B7V0 tRNA pseudouridine synthase A n=1 Tax=Methanosae... 238 1e-61 UniRef50_C9RMQ6 Pseudouridylate synthase n=1 Tax=Fibrobacter suc... 238 2e-61 UniRef50_C5WYL0 Pseudouridylate synthase n=3 Tax=Andropogoneae R... 237 3e-61 UniRef50_B6WBX6 Pseudouridylate synthase n=1 Tax=Anaerococcus hy... 236 6e-61 UniRef50_D1YY68 Pseudouridylate synthase n=1 Tax=Methanocella pa... 235 1e-60 UniRef50_B5Y955 tRNA pseudouridine synthase A n=1 Tax=Coprotherm... 235 1e-60 UniRef50_B1ZVD8 Pseudouridylate synthase n=2 Tax=Opitutaceae Rep... 235 1e-60 UniRef50_C7PRM5 Pseudouridylate synthase n=1 Tax=Chitinophaga pi... 235 1e-60 UniRef50_Q12VJ7 tRNA pseudouridine synthase A n=5 Tax=Archaea Re... 235 1e-60 UniRef50_Q9BZE2 tRNA pseudouridine synthase 3 n=20 Tax=Eukaryota... 235 2e-60 UniRef50_P47428 tRNA pseudouridine synthase A n=2 Tax=Mycoplasma... 235 2e-60 UniRef50_Q2FT01 Pseudouridylate synthase n=1 Tax=Methanospirillu... 235 2e-60 UniRef50_A2QE34 Catalytic activity: tRNA uridine <=> tRNA pseudo... 234 2e-60 UniRef50_A8IW91 Pseudouridylate synthase (Fragment) n=1 Tax=Chla... 234 2e-60 UniRef50_B2B096 Predicted CDS Pa_3_8390 n=1 Tax=Podospora anseri... 234 3e-60 UniRef50_Q2NHB4 tRNA pseudouridine synthase A n=1 Tax=Methanosph... 233 4e-60 UniRef50_B0E7N4 Pseudouridylate synthase n=2 Tax=Entamoeba RepID... 233 4e-60 UniRef50_A8Z5T1 Pseudouridylate synthase n=4 Tax=Flavobacteriale... 233 6e-60 UniRef50_C7LK25 Pseudouridylate synthase n=2 Tax=Candidatus Sulc... 233 7e-60 Sequences not found previously or not previously below threshold: >UniRef50_Q15VG2 tRNA pseudouridine synthase A n=12 Tax=Gammaproteobacteria RepID=TRUA_PSEA6 Length = 263 Score = 335 bits (859), Expect = 1e-90, Method: Composition-based stats. Identities = 168/260 (64%), Positives = 205/260 (78%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +IALG+EYDG++++GWQRQNEV SVQ+ LE+AL+++ANEPI V CAGRTDAGVH TGQVV Sbjct: 2 RIALGVEYDGARFHGWQRQNEVISVQQHLEEALTRIANEPIRVVCAGRTDAGVHATGQVV 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HFETT+ R D AWTLG+N LP I+VRWVK VP+DFHARFSATARRYRYIIYN+ LR Sbjct: 62 HFETTSQRPDRAWTLGINTYLPDTISVRWVKAVPEDFHARFSATARRYRYIIYNNTLRSG 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 +L+ GVTH Y LD E MH AAQ L+G++DF+SFRAV CQ++T R + HI V R G Y+ Sbjct: 122 ILANGVTHIYGDLDHELMHEAAQKLVGKHDFSSFRAVNCQAKTATRTMSHIRVKRMGDYI 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 V+D++ANAF+HHMVRNI G+L+ +G +P W+ ELL KDRT A TA GLYLV V Sbjct: 182 VIDVQANAFLHHMVRNITGTLVAIGHKEKPVEWVDELLEVKDRTKAGITALPNGLYLVHV 241 Query: 251 DYPDRYDLPKPPMGPLFLAD 270 YP+ + LPK MGPLFLAD Sbjct: 242 TYPETFALPKLKMGPLFLAD 261 >UniRef50_B0KCN3 tRNA pseudouridine synthase A n=9 Tax=Clostridia RepID=TRUA_THEP3 Length = 244 Score = 332 bits (853), Expect = 5e-90, Method: Composition-based stats. Identities = 91/244 (37%), Positives = 141/244 (57%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + + +EYDG+ Y+GWQ Q +VQE L+KA+ +V E + + A RTD GVH Q Sbjct: 1 MRNVMIVVEYDGTNYHGWQYQKNAVTVQEVLQKAIKKVTGEEVNLIGASRTDTGVHALYQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V +F+T +N+ LP DI V K V D FHAR+SA +RY+YII N + + Sbjct: 61 VANFKTNTKIPAEKLPYALNSVLPDDIVVVQAKDVEDSFHARYSAKRKRYKYIILNRKFQ 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + H PL+ E M +AA L+G +DF++F+A + R V + + ++ Sbjct: 121 MPTMRNYCWHISYPLNIEEMKKAASYLIGTHDFSAFKASGSSKTSTIRTVYDLTIEKNED 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 ++ ++I+AN F+++MVR IVG+L VG E + ++L +KDRT A TA +GLYL+ Sbjct: 181 FINIEIEANGFLYNMVRIIVGTLSYVGLGKIKEDEVYDILKSKDRTKAGITAPPQGLYLI 240 Query: 249 AVDY 252 + Y Sbjct: 241 KIIY 244 >UniRef50_A6TWE8 Pseudouridylate synthase n=8 Tax=Clostridiales RepID=A6TWE8_ALKMQ Length = 255 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 96/245 (39%), Positives = 138/245 (56%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I + IEYDG+ Y GWQ Q S+QE++ KAL +V E IT +GRTDAGVH GQ Sbjct: 1 MRNIMIEIEYDGTNYSGWQIQQNAPSIQEEIAKALKKVTGEEITTHGSGRTDAGVHAQGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V F+ + + +N LP DI + K +P+DFHAR+SA +RY Y I N+ Sbjct: 61 VASFQLHSKIPAERISFALNGKLPRDITILEAKEMPEDFHARYSAIGKRYGYCIMNNTHG 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 A+L H LD ++M +A++ LLG +DF F A Q ++ R + IN G Sbjct: 121 SALLRNYCYHVPYKLDLQKMKQASETLLGTHDFKGFMASGSQVKSTVRRIDEINFDTQGS 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + + ++ N F++ MVR IVGSL+ +G E + +L ++R +A TA A+GLYL Sbjct: 181 QIWITMQGNGFLYKMVRIIVGSLVGIGTGKIKEEALQNILETQNRRVAVKTAPAQGLYLQ 240 Query: 249 AVDYP 253 V YP Sbjct: 241 KVFYP 245 >UniRef50_C4Z2W2 Pseudouridylate synthase n=10 Tax=Firmicutes RepID=C4Z2W2_EUBE2 Length = 253 Score = 325 bits (834), Expect = 8e-88, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 137/249 (55%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + +I L + YDG++Y GWQ Q E +++ L+KA+ ++ E + V A RTDAGVH G Sbjct: 1 MRRIKLIVAYDGTEYSGWQIQPEAPTIEMCLDKAIRELTGENVHVTGASRTDAGVHAYGN 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V F+T + +T +N LP I ++ V DFH R T + Y Y I N + Sbjct: 61 VAVFDTESTIPGDRFTFALNRFLPDSIVIQDSWEVSGDFHPRHCNTRKTYEYRILNTVVP 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 H +D E+M AA ++GE+DF SF V+ Q+ + R + + V + G Sbjct: 121 LPQKRNFTWHVTGSIDIEKMKEAAAYIVGEHDFKSFCCVRTQAESTVRTIYSLEVLQEGS 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 +++ IK N F+++MVR I G+L++VG ++ ++L AKDRT+A TA +GL LV Sbjct: 181 EIIIRIKGNGFLYNMVRIITGTLIQVGKGRFKPEYVKQMLEAKDRTVAGQTAPPQGLTLV 240 Query: 249 AVDYPDRYD 257 ++Y D D Sbjct: 241 GIEYVDNDD 249 >UniRef50_C6D4K9 Pseudouridylate synthase n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D4K9_PAESJ Length = 246 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 132/246 (53%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + IA + YDG+ + G+Q Q R++Q+++E A+ ++ E I + +GRTDAGVH GQ Sbjct: 1 MRNIAATVSYDGTDFNGFQSQPYGRTIQQEIELAIKKLTGEDIIILGSGRTDAGVHANGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V +F T + W + +N LP DI + VP+ FH+R SA + YRY I + Sbjct: 61 VFNFLTESTIPAERWAIALNTRLPKDIVILEAHEVPEAFHSRRSAKRKTYRYTIDMGKFP 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + H PL+ E M + L+GE+DFTSF ++ R + + R G Sbjct: 121 DVFYRRYAFHHPTPLNVEAMQKGLSFLVGEHDFTSFTSIHSTKPHHVRTIYEAYLEREGQ 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + + + N F+++M+R ++G+L+ VG +A +L + R+LA TA GL L+ Sbjct: 181 MLHMYMTGNGFLYNMIRIVMGTLLHVGHGKLKPEDMARILEGRKRSLAGPTAMPHGLMLM 240 Query: 249 AVDYPD 254 V+YP+ Sbjct: 241 KVEYPE 246 >UniRef50_A4XKB7 tRNA pseudouridine synthase A n=11 Tax=Clostridia RepID=TRUA_CALS8 Length = 244 Score = 324 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 89/244 (36%), Positives = 141/244 (57%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I L IEYDG+ Y+GWQ+Q ++VQ +E A+ ++ E + + +GRTD GVH GQ Sbjct: 1 MRNILLTIEYDGTNYFGWQKQPNKKTVQGVIEDAIKKITGEDVNLVGSGRTDRGVHALGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 +F+T + + L +N+ LP DI+++ V DF AR+SA + Y+Y+IYNH+ R Sbjct: 61 KANFKTESKIPTEKFPLALNSVLPNDISIKDAAEVSLDFSARYSAKQKTYKYLIYNHKFR 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 PA+L V HF LD M ++ + +GE DF+SF + ++ + R + +T Sbjct: 121 PAILCNYVYHFPYELDLVSMQKSCEYFIGEYDFSSFCSSGSETNSKVRRIFDCYLTFEND 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + + I AN F+++M R I G++++VG + I ++ +KDRT A T GLYLV Sbjct: 181 CIAIYITANGFLYNMARIIAGTILDVGVGRFKPTDIPLIIESKDRTKAGKTLPPWGLYLV 240 Query: 249 AVDY 252 V Y Sbjct: 241 DVVY 244 >UniRef50_Q8XLQ0 tRNA pseudouridine synthase A 1 n=12 Tax=Clostridium RepID=TRUA1_CLOPE Length = 248 Score = 322 bits (826), Expect = 9e-87, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 142/248 (57%), Gaps = 4/248 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQN----EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVH 64 + I + ++YDGSKY GWQ+QN V +VQ+KLEK L+++ +E I + GRTD+GVH Sbjct: 1 MRNIKITLDYDGSKYKGWQKQNQKGSNVSTVQDKLEKVLTKMTSEEIQLIGCGRTDSGVH 60 Query: 65 GTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYN 124 V +F+T +L +N LP DI V ++ + FHARF+ ++ Y Y I N Sbjct: 61 AKNYVANFKTNSLMTLEQIIEYINEYLPEDIRVTEIREASERFHARFNVKSKTYEYTIDN 120 Query: 125 HRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT 184 ++ + L K H E LD E M A+ LLG +DF SF +++ ++++ R + I Sbjct: 121 NKFKDVFLRKYAWHVEEKLDLEAMEEGAKYLLGTHDFKSFTSLKSKNKSTLRTINSIEFH 180 Query: 185 RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 + + + I N F+ +MVR +VG+L++VG +I ++L AK+R A+ A A G Sbjct: 181 ENNNILSIKINGNGFLLNMVRIMVGTLVDVGLGKIEPKYINDILEAKERAKASEKAPAHG 240 Query: 245 LYLVAVDY 252 L L+ ++Y Sbjct: 241 LCLLELNY 248 >UniRef50_B5CQB6 Pseudouridylate synthase n=9 Tax=Bacteria RepID=B5CQB6_9FIRM Length = 297 Score = 322 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 87/254 (34%), Positives = 128/254 (50%) Query: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60 + + + + +I L + YDG+ Y GWQ QN V +++ +L L+Q+ + + V A RTD Sbjct: 18 IEKEDRKRMKRIRLTVAYDGTDYCGWQVQNNVATIEGELNTVLTQLTGQTVKVIGASRTD 77 Query: 61 AGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRY 120 AGVH G V F+T + + VNA LP DI V V D+H R T + Y Y Sbjct: 78 AGVHARGNVAVFDTESSIPPERFLYAVNALLPEDIVVVDSCEVAADWHPRHCNTEKTYEY 137 Query: 121 IIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMH 180 + N +L + + PLD ERM +AA L GE+DF SF V R + Sbjct: 138 RVLNQKLPDPMRRRDTYFVSFPLDLERMRQAAGYLEGEHDFKSFCNVHTHVEDTVRTIYR 197 Query: 181 INVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATA 240 + V R + ++ N F+++MVR + G+L+ VG I +L AKDR A T Sbjct: 198 LEVIREENVITFRVRGNGFLYNMVRILAGTLIGVGRGLIDPEEIPAMLEAKDRQAAGMTV 257 Query: 241 KAEGLYLVAVDYPD 254 +GL L+ +DY D Sbjct: 258 PPQGLTLMKIDYLD 271 >UniRef50_B8I814 tRNA pseudouridine synthase A n=19 Tax=Clostridia RepID=TRUA_CLOCE Length = 245 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 96/245 (39%), Positives = 143/245 (58%), Gaps = 1/245 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + KI L IEYDG+ Y+GWQ Q ++VQE ++KALS++ E + V RTD GVH GQ Sbjct: 1 MRKIRLTIEYDGTNYHGWQIQKNAKTVQEVIQKALSKLLGEDVGVTGCSRTDVGVHAYGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V HF T + ++ +N LP DI ++ + VP++FHAR+SA ++YRY+IYN Sbjct: 61 VAHFLTDSKIPGDKFSYAINNLLPDDIVIKNSEEVPEEFHARYSAKGKKYRYLIYNSPHA 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT-RHG 187 A++ H L+ M +AA GE+DF +F+A Q R+ R + + V + Sbjct: 121 SAIMRNRSCHVRPELNVAEMQKAAGYFKGEHDFLAFQATGGQVRSTVREIYGMEVYVKED 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + +++ N F+++MVR I G+L+ VG ES I ++A DRT A TA A+GLYL Sbjct: 181 NMISIEVSGNGFLYNMVRIIAGTLIYVGMGKLHESEIPGIIAGLDRTKAGKTAPAQGLYL 240 Query: 248 VAVDY 252 V + Y Sbjct: 241 VQIYY 245 >UniRef50_B5EFM8 tRNA pseudouridine synthase A n=4 Tax=Bacteria RepID=TRUA_GEOBB Length = 250 Score = 319 bits (819), Expect = 6e-86, Method: Composition-based stats. Identities = 97/250 (38%), Positives = 138/250 (55%), Gaps = 1/250 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I L IEYDG+ Y GWQ Q R+VQE L++AL+ + E + +GRTDAGVH G Sbjct: 1 MRNIKLIIEYDGTAYCGWQVQPNGRTVQEVLQEALAAMLGEKTPLHGSGRTDAGVHARGM 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V F+T A+ G+N LPGDIAVR VP +FH RF A A+ YRY I LR Sbjct: 61 VACFKTDKAMPLRAFREGLNCLLPGDIAVREACEVPLEFHPRFDAHAKHYRYTILLDDLR 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + V LD + M A +GE+DF +FRA C ++T R + +++ + G Sbjct: 121 SPLSRLTVWRLKGKLDIQAMRAACAAFVGEHDFAAFRASNCAAKTTVRRIYSMDLVQEGC 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDR-TLAAATAKAEGLYL 247 + +D+K + F+ +MVR I G+L+EVG + +A LL DR + T +GL L Sbjct: 181 LLHLDVKGSGFLKNMVRIITGTLIEVGQGKKSVEDVARLLQGGDRQQNSGMTVPPQGLCL 240 Query: 248 VAVDYPDRYD 257 + V Y ++ D Sbjct: 241 MQVYYQEKCD 250 >UniRef50_B3PFN7 Pseudouridylate synthase n=2 Tax=Gammaproteobacteria RepID=B3PFN7_CELJU Length = 299 Score = 319 bits (817), Expect = 8e-86, Method: Composition-based stats. Identities = 137/263 (52%), Positives = 186/263 (70%), Gaps = 1/263 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEV-RSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + ++ALG+EY G+ ++G+Q Q ++VQ+ LEKALS VA+EPIT+ CAGRTDAGVH T Sbjct: 28 MRRVALGVEYKGADFHGFQVQPNGVKTVQQSLEKALSIVADEPITLVCAGRTDAGVHATN 87 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QV+HF+T A R AW G+ +LP I +RW + V FHARFSA +R YRY++ + Sbjct: 88 QVIHFDTLAQRPLKAWMRGLGPHLPDTIGIRWAQDVSPGFHARFSAQSRTYRYLMSDGAS 147 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 PA+L V+ PLD M + A CL+GE+DFTSFRA QCQ+++P R + ++++ R G Sbjct: 148 SPALLHDQVSWSSRPLDVALMRQGAACLIGEHDFTSFRATQCQAKSPVRRIEYLHLVRRG 207 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 +V++I+ANAF+HHMVRNIVG LM+VGA + SW+ ++LAA+DRT A ATAK GLYL Sbjct: 208 ELIVMEIRANAFLHHMVRNIVGVLMQVGAGFKKPSWVGDVLAARDRTAAGATAKPNGLYL 267 Query: 248 VAVDYPDRYDLPKPPMGPLFLAD 270 VAVDYP + LP GPLF + Sbjct: 268 VAVDYPQEFSLPCCLPGPLFFPE 290 >UniRef50_C6J6C3 Pseudouridylate synthase n=2 Tax=Bacillales RepID=C6J6C3_9BACL Length = 261 Score = 319 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 86/258 (33%), Positives = 130/258 (50%), Gaps = 10/258 (3%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + + + YDG+ Y+G+Q Q +VQ+ +E A+ Q+ E + + +GRTDAGVH Q Sbjct: 1 MRNLLMTVSYDGTNYFGFQTQPGGNTVQDHIEGAIRQLTGETVKIHGSGRTDAGVHARQQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 HF T + W L +NA LP DI V + VP FH+R SA + YRY I +R Sbjct: 61 PFHFHTDSRIPVERWCLALNARLPSDIRVLTAREVPLTFHSRHSAKRKTYRYTINTNRFP 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV----- 183 H L+ + M + L+G +DFTSF + Q + R + + Sbjct: 121 DVFQRNYQFHHPGQLNVDAMQASLPYLVGTHDFTSFASRQSTKLSHVRTIYDARIVVDSL 180 Query: 184 -----TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAA 238 T V + + F+ HMVR IVG+L+E+G + I +L AKDRT A Sbjct: 181 AKIPGTTGQGIVHFYVTGSGFLQHMVRIIVGTLIEIGEGKRTPESIQAILEAKDRTAAGP 240 Query: 239 TAKAEGLYLVAVDYPDRY 256 TA+++GL L +V+Y + Sbjct: 241 TAESKGLMLWSVEYEEED 258 >UniRef50_B9M6W5 tRNA pseudouridine synthase A n=8 Tax=Deltaproteobacteria RepID=TRUA_GEOSF Length = 244 Score = 315 bits (809), Expect = 8e-85, Method: Composition-based stats. Identities = 91/244 (37%), Positives = 137/244 (56%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I L IEYDG+ Y GWQ Q ++Q+ +E++L ++ + + + +GRTDAGVH G Sbjct: 1 MRNIKLIIEYDGTAYCGWQLQPNGITIQQVIEESLEKMLGQSVRLQSSGRTDAGVHALGM 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V F+T A++ G+N LP DIA+R VP F+ R A ++ YRY IYN + R Sbjct: 61 VAVFKTQKDLPVRAFSDGLNCLLPPDIAIRDASEVPLSFNPRADAISKHYRYTIYNSKRR 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + H L+ E M A +GE+DF +FRA C ++T R + H++V + G Sbjct: 121 SPLTRLNSWHLRGILNMELMQLGASHFVGEHDFAAFRASNCVAKTTIRRMFHVSVAKVGD 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 V++D+ + F+ +MVR I G+L+ VG S I LLA DR+ + TA +GL L+ Sbjct: 181 SVIIDVHGSGFLKNMVRVIAGTLVAVGQGKLDPSAIPGLLAGGDRSASGITAPPQGLCLM 240 Query: 249 AVDY 252 V Y Sbjct: 241 EVFY 244 >UniRef50_A1U0X5 Pseudouridylate synthase n=7 Tax=Bacteria RepID=A1U0X5_MARAV Length = 302 Score = 315 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 139/260 (53%), Positives = 184/260 (70%), Gaps = 1/260 (0%) Query: 11 KIALGIEYDGSKYYGWQRQN-EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 ++A+ EYDG ++GWQ Q VRSV+ +L +A ++VA+ P+ + CAGRTDAGVH + QV Sbjct: 18 RVAIIFEYDGQAFHGWQLQKSGVRSVEAELSRAAARVADHPVDLVCAGRTDAGVHASFQV 77 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 HF+T ++R +W +G+N LP DI+V W DFHARFSA RRYRY+IYNH +RP Sbjct: 78 AHFDTPSVRNLRSWVMGMNTALPDDISVHWAGNGQGDFHARFSAIYRRYRYVIYNHPVRP 137 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 + V+ + PLDAERMHRA+Q L+GE+DF+SFRA CQSRTP R + I+VTR G + Sbjct: 138 GIQRGQVSWTFRPLDAERMHRASQALVGEHDFSSFRAAGCQSRTPVRFLEQISVTRCGEF 197 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 VV+D++ANAF+HHMVRNI G+LM VG QPE WI ++L +DR LA TA GLYLV Sbjct: 198 VVIDVQANAFLHHMVRNIAGALMAVGNGQQPEDWIGDILECRDRKLAGVTAPPYGLYLVD 257 Query: 250 VDYPDRYDLPKPPMGPLFLA 269 V YP+ + +PK GP F+ Sbjct: 258 VGYPESFGIPKALCGPAFVT 277 >UniRef50_Q21IY8 Pseudouridylate synthase n=2 Tax=Gammaproteobacteria RepID=Q21IY8_SACD2 Length = 289 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 137/267 (51%), Positives = 173/267 (64%), Gaps = 6/267 (2%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVR-SVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + ++ L +EYDGS Y G+QRQ +VQ +LEKALS VANEP+T+ CAGRTDAGVH T Sbjct: 22 MRRVVLQVEYDGSPYCGFQRQLTAPNTVQAELEKALSSVANEPVTIVCAGRTDAGVHATS 81 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 Q+VHF+T A R AW GVN +LP I V K V DFHARFSA +R YRY+I+ ++ Sbjct: 82 QIVHFDTLAGRPSKAWLQGVNTHLPFSIRVISAKEVGFDFHARFSALSRTYRYVIHVSQV 141 Query: 128 RPAVLSKGVTHFYEP-----LDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHIN 182 R A L GVT P LD M AA LLGE+DFTSFR V CQ+ +P R + + Sbjct: 142 RSAHLVNGVTWVKLPQKLSGLDVPAMQEAASLLLGEHDFTSFRTVHCQAASPVRTMEVAD 201 Query: 183 VTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 V + G ++VV + ANAF+HHMVRNIVG L+ VG S + EL+ +DR+ AA TA A Sbjct: 202 VVQMGEFIVVQVTANAFLHHMVRNIVGVLLRVGRGELKPSRVTELIELRDRSQAAETAPA 261 Query: 243 EGLYLVAVDYPDRYDLPKPPMGPLFLA 269 GLY V V YP+R+ +P GP+FL Sbjct: 262 AGLYFVNVQYPERFAMPMHCQGPIFLP 288 >UniRef50_Q2LUS6 Pseudouridylate synthase n=5 Tax=Bacteria RepID=Q2LUS6_SYNAS Length = 259 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 143/245 (58%), Gaps = 1/245 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 I L +EYDG+ Y GWQRQ + ++Q+ LE++++++ EP+ + +GRTDAGVH Q Sbjct: 15 RRNIKLVLEYDGTAYRGWQRQGNLPTIQKILEESIARITQEPVILHGSGRTDAGVHALNQ 74 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V +F T++ A G+N+ LPGDI +R + V ++FH+R+SA ++ Y Y I N +R Sbjct: 75 VANFRTSSRIPAANLLRGLNSLLPGDIVIRETEDVDEEFHSRYSAKSKSYLYRILNSPVR 134 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + LD E+M A L G++DFTSF A ++ R ++ + R Sbjct: 135 SPLQRNSAWFIRCCLDLEKMAGAISLLCGKHDFTSFCAAGSDVKSCVRTIIRAEIERETE 194 Query: 189 Y-VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + + ++A+ F+ HMVRNIVG+L+E+GA + ++L AKDR A TA +GL+L Sbjct: 195 QVITISVEADGFLRHMVRNIVGTLVEIGAGQDSSEIMRDILEAKDRGCAGITAPPQGLFL 254 Query: 248 VAVDY 252 V Y Sbjct: 255 QKVSY 259 >UniRef50_A5WGT0 Pseudouridylate synthase n=6 Tax=Moraxellaceae RepID=A5WGT0_PSYWF Length = 302 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 134/269 (49%), Positives = 177/269 (65%), Gaps = 2/269 (0%) Query: 2 SDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDA 61 S Q P ALG+E++G+ Y GWQRQ EV VQ+ LE+ LS++ANEPI V AGRTDA Sbjct: 29 SSTPQHPAQTYALGVEFNGANYRGWQRQQEVLCVQQVLEETLSKIANEPIEVVAAGRTDA 88 Query: 62 GVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYI 121 GVHG + HF T+A R W G N+ LP DIA+RW++ +PD FHARF A ARRYRYI Sbjct: 89 GVHGGNMLAHFTTSAKRGVYNWLRGANSLLPDDIAIRWIQPMPDTFHARFGAIARRYRYI 148 Query: 122 IYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHI 181 N RPAVL+ VTH +EPLD M +AA+ ++G +DF+SFRA CQS+ P RN+ H Sbjct: 149 TLNQPQRPAVLNHLVTHIHEPLDLALMQQAAEHIVGTHDFSSFRAAACQSKQPVRNIHHA 208 Query: 182 NVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAK 241 + +HG ++V DI+A+ F+HHMVRN++G+L +G +L AKDRT+A TA Sbjct: 209 KLFKHGEFIVFDIQADGFLHHMVRNLMGTLFAIGKGELQPEDYLRILQAKDRTIAPPTAP 268 Query: 242 AEGLYLVAVDYPDRYD--LPKPPMGPLFL 268 +GLY + YP+ LPK P+ P +L Sbjct: 269 PDGLYFINAYYPEPMQALLPKVPLAPQWL 297 >UniRef50_Q3A3B5 tRNA pseudouridine synthase A n=6 Tax=Desulfuromonadales RepID=TRUA_PELCD Length = 252 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 102/241 (42%), Positives = 144/241 (59%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 + L IEYDG+ Y GWQRQ SVQ+ +E+AL++V P ++ +GRTDAGVH G V H Sbjct: 4 VRLIIEYDGTPYVGWQRQPNGLSVQQVVEEALAKVCGGPHSLVSSGRTDAGVHARGMVAH 63 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 F T AA+ GVN LP IAVR +PDDFHAR+SA + YRY IY +R + Sbjct: 64 FVTPQPLPMAAYREGVNRFLPAQIAVRDAALMPDDFHARYSAVGKWYRYSIYRSPVRSPL 123 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVV 191 + H LD + M +AA+ L+G +DF +FRA C +RT R V +++ +V Sbjct: 124 ACRFSWHVRTVLDLQAMRQAARLLVGRHDFAAFRASGCAARTTVREVFSVDIVDAEEWVY 183 Query: 192 VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVD 251 VD++ + F+ +MVR +VG+L+EVG +P + +LA R + TA A+GL L+ V Sbjct: 184 VDVRGSGFLRNMVRIMVGTLVEVGRGARPPEEVGAMLAGGCRKQSGITAPAQGLCLMEVA 243 Query: 252 Y 252 Y Sbjct: 244 Y 244 >UniRef50_Q63H59 tRNA pseudouridine synthase A 1 n=102 Tax=Bacillales RepID=TRUA1_BACCZ Length = 247 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 130/247 (52%), Gaps = 1/247 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVA-NEPITVFCAGRTDAGVHGTG 67 + +I + YDG + G+Q Q + R+VQ+++EKAL ++ E + V +GRTD+ VH G Sbjct: 1 MDRIKCTVAYDGMHFCGYQIQPQHRTVQQEIEKALQKLHKGELVRVQASGRTDSTVHAKG 60 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QV+HF+T ++ W+ +N LP DI + V+ ++FHAR+ + YRY + + Sbjct: 61 QVIHFDTPLSLEEWQWSNALNTMLPDDIVITQVEKKTEEFHARYGVERKEYRYRVLVSKT 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 V + PL+ + +A +G +DFTSF + + + R + I + Sbjct: 121 ADVFRRNYVYQYPYPLEVNSIRKAIPYFIGTHDFTSFCSAKTDKKDKVRTIYEIELIEQD 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 ++ N F+++MVR IVG+L+ VG I E+LA ++R A A GLYL Sbjct: 181 DELIFRFVGNGFLYNMVRIIVGTLLNVGQGKLDPDSIPEILAKQNRQFAGKMAPGHGLYL 240 Query: 248 VAVDYPD 254 V+Y + Sbjct: 241 WQVNYNN 247 >UniRef50_Q5WLN0 tRNA pseudouridine synthase A n=15 Tax=Bacillales RepID=TRUA_BACSK Length = 261 Score = 312 bits (801), Expect = 7e-84, Method: Composition-based stats. Identities = 91/255 (35%), Positives = 134/255 (52%), Gaps = 1/255 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVA-NEPITVFCAGRTDAGVHGTG 67 + ++A + YDG+ + G+Q Q R+VQ ++E+AL ++ + V +GRTDAGVH G Sbjct: 1 MSRMACKLSYDGTAFAGYQVQPGKRTVQSEVERALQEIHKGARVPVVASGRTDAGVHACG 60 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QV+HF+T W +N +LP DI V V DFHAR+ A A+ YRY I Sbjct: 61 QVLHFDTELTIAPERWVSALNTHLPDDIVVTNAAMVEPDFHARYGAQAKEYRYYIQCGPF 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 H + LD M AA+ LLG +DF++F A R + H+ V Sbjct: 121 ENVFRRHFAVHIKQALDVPAMQTAAKHLLGTHDFSAFCAANTTVTDKVRTITHVAVQPSE 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 +++ I+ F+++MVR IVG+L+E+G + S + +LA K R LA TA A GL L Sbjct: 181 EGLLISIRGTGFLYNMVRIIVGTLLEIGTGKRVASEMKVILAGKSRNLAGKTAPAHGLCL 240 Query: 248 VAVDYPDRYDLPKPP 262 VDY + + P Sbjct: 241 YEVDYGQPLFVNETP 255 >UniRef50_D2RNY1 tRNA pseudouridine synthase A n=2 Tax=Acidaminococcus RepID=D2RNY1_ACIFE Length = 245 Score = 312 bits (800), Expect = 7e-84, Method: Composition-based stats. Identities = 101/244 (41%), Positives = 137/244 (56%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I + YDG++Y G+QRQ VQ+ LEKAL++V EPI + AGRTDAGVH GQ Sbjct: 2 IRTIKATVAYDGTRYQGFQRQKNGVGVQQVLEKALTEVLKEPILIKAAGRTDAGVHALGQ 61 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V+ F T++ + + +LP DIA+R + V DDFHARF A + Y+Y IY L Sbjct: 62 VISFATSSRIPPENYRRALEPHLPPDIAIREAEVVRDDFHARFDAVDKTYQYKIYYSPLP 121 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 E LD E M+RAA LLG++DFTSF+ Q +P R + + + G Sbjct: 122 DPTQRNTTWEIREKLDVEAMNRAAALLLGKHDFTSFKNQGSQDTSPVRTLTEAHWVQDGN 181 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 I + F++ MVRNIVG L+ VG E A ++AAK+R A A A+GLYL+ Sbjct: 182 LYTFTITGDGFLYRMVRNIVGCLVRVGTGQWNEEDFARVMAAKNRKQAGMAAPAQGLYLM 241 Query: 249 AVDY 252 V Y Sbjct: 242 HVSY 245 >UniRef50_Q31HH6 tRNA pseudouridine synthase A n=4 Tax=Gammaproteobacteria RepID=TRUA_THICR Length = 262 Score = 312 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 143/252 (56%), Positives = 182/252 (72%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + +A+GIEY G+ Y GWQ Q SVQ++LEKALS +A+EPI + CAGRTD GVH GQ Sbjct: 1 MTLLAIGIEYQGTAYCGWQHQKHCDSVQQQLEKALSYIADEPIGLNCAGRTDTGVHAIGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 + HFET A R D AW GVN LP DI V WVK +P+DFHARFSA AR+YRY+I+N + Sbjct: 61 IAHFETNASRPDKAWIQGVNTQLPNDIRVTWVKPMPEDFHARFSAVARQYRYVIFNRPVH 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 A+L+ VT PLD ++MH AAQ LLGENDF+SFRA CQ+ RNV ++ V+R G Sbjct: 121 SAILANRVTWENRPLDVKKMHAAAQDLLGENDFSSFRAAGCQASHANRNVQYLQVSRQGN 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 +V VDI+ANAF+HHMVRNIVG+L+EVG ++P W++ELL +DRT A TA A GLY V Sbjct: 181 FVFVDIQANAFLHHMVRNIVGTLLEVGRLDKPVEWVSELLKKQDRTQAGMTAPAAGLYFV 240 Query: 249 AVDYPDRYDLPK 260 YP+ ++LP+ Sbjct: 241 NALYPESFELPR 252 >UniRef50_A3ZQX0 Pseudouridylate synthase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQX0_9PLAN Length = 260 Score = 311 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 98/251 (39%), Positives = 143/251 (56%), Gaps = 4/251 (1%) Query: 8 PVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 P + L + YDG+ Y GWQ QN+ R++Q LE+ L ++ E I V +GRTD+GVH G Sbjct: 5 PERALQLIVSYDGTNYAGWQIQNDQRTIQGALERTLLKITGEKIRVTGSGRTDSGVHAIG 64 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QVV F + +NA LP DI V+ + +F+A A +RYRY++ R+ Sbjct: 65 QVVSFRMQSQLSPDVMRRALNAELPPDIVVQSARNAIPEFNAIDCAIKKRYRYLLQEGRI 124 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + + L+ M AAQ L+GE+DF SF +V + T R+V + V R Sbjct: 125 DDVFSRQYAWFVKKELNFAAMQAAAQHLIGEHDFASFESVGSERMTTVRHVFDVQVLRSE 184 Query: 188 ----PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 V ++++AN F+++MVR IVG+L++VG +P W+AE+LAAK RT TA A Sbjct: 185 RHEFDKVAIEVEANGFLYNMVRIIVGTLVDVGKGRRPPEWVAEVLAAKKRTAGGMTAPAH 244 Query: 244 GLYLVAVDYPD 254 GLYL+ VDYP+ Sbjct: 245 GLYLLRVDYPE 255 >UniRef50_UPI0001C37706 tRNA pseudouridine synthase A n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37706 Length = 257 Score = 311 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 83/244 (34%), Positives = 125/244 (51%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + + I Y G+ Y+G+Q QN +VQ LEK LS+V NEP+++ RTD GVH Sbjct: 1 MRNLKVTIAYRGTNYHGFQIQNNAVTVQGTLEKHLSKVLNEPVSITGCSRTDTGVHANMF 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 + +T + + GVN LP DI++ + VP DFHARF + Y Y ++ + Sbjct: 61 CFNVKTNSRISTLGFCRGVNGELPDDISILSCEEVPIDFHARFDCKGKEYIYKMHCSESK 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 H+ P D E +AAQ +G +DF+SF A T R + + G Sbjct: 121 DPFAPDMKFHYRRPFDIEAARKAAQYFVGTHDFSSFCADCTNVSTTVRTIYSFKIENSGD 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 V++ +K N F+++M+R + G+L++V + +L AKDR A TA A GLYL Sbjct: 181 TVIMLVKGNGFLYNMIRIMAGTLIDVSEKRFSPDDMPRILEAKDRLQAGRTAMAHGLYLN 240 Query: 249 AVDY 252 V Y Sbjct: 241 RVFY 244 >UniRef50_A5N4T0 tRNA pseudouridine synthase A n=25 Tax=Clostridium RepID=TRUA_CLOK5 Length = 244 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 81/244 (33%), Positives = 130/244 (53%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I L IEYDG+ Y GWQRQ ++Q++LE+A+ + E V + RTDAGVH G Sbjct: 1 MKNIKLVIEYDGTNYSGWQRQYNAITIQQRLEEAIEKATGEFSPVIGSSRTDAGVHARGF 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V +F T + + + +N LP DIAV K V FH+R+ T + Y Y I Sbjct: 61 VCNFFTASKIPTSNIKMVLNTLLPEDIAVLDSKEVDSSFHSRYFTTGKEYSYTIVTGDRP 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 P + + V +F LD E++ + + +G +DF++F+ +R+ R + + V + Sbjct: 121 PVIGRQYVYYFRRKLDIEKIKNSCEYFIGTHDFSAFKKKGSTARSSIRTIKELTVLKEKN 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + +I + F+++MVR I+G+L+EVG ++ +L +KDR A A+GL L Sbjct: 181 IIKFNIVGDGFLYNMVRIIIGTLLEVGLGRFSIEYVKYILESKDRAKAGKPVPAKGLCLE 240 Query: 249 AVDY 252 V Y Sbjct: 241 KVFY 244 >UniRef50_A0LIV1 Pseudouridylate synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LIV1_SYNFM Length = 261 Score = 310 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 95/256 (37%), Positives = 140/256 (54%), Gaps = 1/256 (0%) Query: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60 M+ P L +EYDGS Y+GWQRQ V ++QE LE L + P+ V +GRTD Sbjct: 1 MNQYDLPERKNFKLILEYDGSHYHGWQRQLGVLTIQEVLESRLEVMLQSPVGVRASGRTD 60 Query: 61 AGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRY 120 AGVH GQVV+F + G+N+ LP DI V + + FHARFSAT + Y Y Sbjct: 61 AGVHACGQVVNFHVHTRLRPEEILRGINSLLPPDIVVLHAEVAAESFHARFSATGKTYEY 120 Query: 121 IIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMH 180 I N +R A+ + H +PL+ +RM LLG +DF +F A + ++ R + Sbjct: 121 HILNRPIRSALQRRYAWHVPQPLEPQRMRECLGSLLGRHDFAAFMASGSKVKSTERTIRR 180 Query: 181 INVTR-HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAAT 239 ++ + + +AN F+ HMVRN+VG+++EVG + ++L+++DR A T Sbjct: 181 ADLDCLENGEMRLVFEANGFLRHMVRNLVGTIVEVGRGVRAPEEFLDILSSRDRKRAGMT 240 Query: 240 AKAEGLYLVAVDYPDR 255 A A GL+L AV Y + Sbjct: 241 APAHGLFLTAVHYTED 256 >UniRef50_A7NCA0 tRNA pseudouridine synthase A n=19 Tax=Francisella RepID=TRUA_FRATF Length = 258 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 121/246 (49%), Positives = 164/246 (66%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + L IEY G Y GWQRQ+ SVQE+LEKALS++AN+ I V CAGRTD GVH T Q Sbjct: 1 MKNYLLQIEYFGKNYCGWQRQSHSLSVQEELEKALSKIANQNIEVTCAGRTDTGVHATSQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 +V+F + A R +AW GVNA LP DI + V+ V ++F++RF+A R Y YIIYN Sbjct: 61 IVNFYSNAYRPLSAWQRGVNALLPQDIKILAVQQVNNNFNSRFTAINRTYNYIIYNSATS 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + ++ LD ++M++A + LLGE DF+SFR+ QCQS TP+RN+ + G Sbjct: 121 SPIFAEHCLWENRELDIDKMNQACEYLLGEQDFSSFRSSQCQSNTPFRNIQKAEFIKQGS 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 ++V ++ NAF+HHM+RN+VGSL++VG + WI +L AKDRT AA TAKA GLY V Sbjct: 181 FIVFEVVGNAFLHHMIRNLVGSLLKVGLGFESPEWIKVVLEAKDRTQAAETAKAHGLYFV 240 Query: 249 AVDYPD 254 V+YP+ Sbjct: 241 GVEYPE 246 >UniRef50_C4V5N7 Pseudouridylate synthase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V5N7_9FIRM Length = 256 Score = 308 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 101/253 (39%), Positives = 132/253 (52%), Gaps = 1/253 (0%) Query: 4 QQQPPVYKIALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVANEPITVFCAGRTDAG 62 + IAL I YDG+ Y+G+QRQ V +VQ LE AL+++ E + + AGRTDAG Sbjct: 1 MMKQRARNIALTIAYDGTNYHGFQRQTPPVLAVQNVLEGALAKICGEMVELAAAGRTDAG 60 Query: 63 VHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYII 122 VH GQVV+F T VN LP DI V P +F AR SAT + Y Y I Sbjct: 61 VHAYGQVVNFFTDGRIPTEHLPRAVNGLLPPDIVVSQAWEAPREFSARHSATGKAYVYRI 120 Query: 123 YNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHIN 182 R+ ++PLD E MH L G +D++SFRA +P R + I Sbjct: 121 EECRVPNPFTRNYAWQVFQPLDHEAMHAVLLLLKGTHDYSSFRAAGGAPMSPVRTLDEIR 180 Query: 183 VTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 +T + + + F++HMVRNIV + VG S AE+ AA+DR LA TA A Sbjct: 181 LTEEEGRLSIYVHGTGFLYHMVRNIVSTAAAVGMGRISPSRFAEIFAARDRRLAPPTAPA 240 Query: 243 EGLYLVAVDYPDR 255 GLYL+AVDY R Sbjct: 241 CGLYLLAVDYGQR 253 >UniRef50_C4Z854 Pseudouridylate synthase n=3 Tax=Clostridiales RepID=C4Z854_EUBR3 Length = 276 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 91/251 (36%), Positives = 138/251 (54%), Gaps = 1/251 (0%) Query: 3 DQQQPPVYKIALGIEYDGSKYYGWQRQNEVR-SVQEKLEKALSQVANEPITVFCAGRTDA 61 + + + YDG++Y GWQ Q ++Q KL+ LS +A +P+ V +GRTDA Sbjct: 21 NFMNTETQNYKIIVAYDGTRYKGWQVQKSTDDTIQGKLQHVLSTLAGKPVEVIGSGRTDA 80 Query: 62 GVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYI 121 GVH GQV F + +N +LP DIAV + VPD FHAR++A ++ Y Y Sbjct: 81 GVHAVGQVASFHMPKHFSKDEIFIWLNEHLPADIAVTDISNVPDRFHARYNAVSKTYVYT 140 Query: 122 IYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHI 181 I+ + K V + +PLD +RM +AA LLGE+DF +F + ++ R + I Sbjct: 141 IHTGIVSDVFRRKYVYDYDKPLDTDRMKKAAAYLLGEHDFKAFCGNRHMKKSTVRTIFSI 200 Query: 182 NVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAK 241 ++ + G +V+ + F+ +M+R I G+L+EVG + + E+LA+KDR A TA Sbjct: 201 DIEKTGADIVISYTGDGFLQNMIRIITGTLIEVGDGRKNPDAVMEILASKDRAQAGYTAP 260 Query: 242 AEGLYLVAVDY 252 A GL L VDY Sbjct: 261 ACGLRLERVDY 271 >UniRef50_Q1Q1P7 Pseudouridylate synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1P7_9BACT Length = 244 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 92/244 (37%), Positives = 137/244 (56%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + L IEY+G+ Y GWQ Q SVQE L A+ V E + + AGRTDAGVH GQ Sbjct: 1 MRNVRLTIEYEGTNYAGWQWQKNAISVQETLTHAVRTVIREEVEIHGAGRTDAGVHALGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V +F+T + +N +LP DI ++ V + + FHAR+SAT++ YRY + N LR Sbjct: 61 VANFKTYSAIPAKQLLRAINFHLPQDITIKDVADMEEGFHARYSATSKVYRYTVLNDWLR 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 ++ + PLD +M AAQ L+G +DFTSF ++ R + ++ + + G Sbjct: 121 TSLNRNFCYVYGFPLDLSKMMTAAQYLIGTHDFTSFTTKALDNKDRIRTIKNLEIQKEGK 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Y+ ++AN F++ MVR IVG+L+E+G I +LL +R A TA A+GL + Sbjct: 181 YIYFVVEANGFLYKMVRTIVGTLLEIGRGKMDVYLIRKLLETGNRDDAGPTAPAKGLCMK 240 Query: 249 AVDY 252 V Y Sbjct: 241 EVKY 244 >UniRef50_B0MNN1 Pseudouridylate synthase n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MNN1_9FIRM Length = 250 Score = 307 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 86/249 (34%), Positives = 131/249 (52%), Gaps = 2/249 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + + + Y+G+ Y+G+QRQN S+Q+ +E+ LS++ E IT+ RTD GVH Sbjct: 1 MRNLKVTMAYNGTAYHGYQRQNNANSIQQTVEEVLSKLLCEDITINGCSRTDTGVHARAF 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V + +T + G NA LP DIA + +PD FHARF + + Y Y IY +R Sbjct: 61 VFNVKTNCPIPCEGFIKGGNALLPQDIAFLSCEDMPDSFHARFDSKGKEYIYKIYTGDVR 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSR--TPWRNVMHINVTRH 186 + H+ D E+M +AA+ ++GE+DF SF + + T R V I+V + Sbjct: 121 DVFSADTALHYPYKPDIEKMRKAARLIVGEHDFASFCKAEAKEHLLTTVRTVYSIDVEQT 180 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G +V + + N F+H+MVR IVG+L+ + + E I L DR A T GLY Sbjct: 181 GDFVEIKVCGNGFLHNMVRIIVGTLIYISEGKRTEQDIINALTKPDREFAGKTVPPCGLY 240 Query: 247 LVAVDYPDR 255 L V Y + Sbjct: 241 LNKVFYEND 249 >UniRef50_UPI0001BCC844 tRNA pseudouridine synthase A n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCC844 Length = 267 Score = 306 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 96/253 (37%), Positives = 132/253 (52%), Gaps = 2/253 (0%) Query: 3 DQQQPPVYKIALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVANEPITVFCAGRTDA 61 + + +AL I YDG++Y+G+QRQ V +VQ LE AL++V E + + AGRTDA Sbjct: 7 EMMKRRARNLALKIAYDGTRYHGFQRQSPPVVAVQNALEAALAEVCGETVELAAAGRTDA 66 Query: 62 GVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYI 121 GVH GQVV+F T VN LP DIAV DF AR SA + Y Y Sbjct: 67 GVHACGQVVNFFTDGRIPTERLPRAVNGLLPPDIAVTDAWEAARDFSARHSAKGKAYVYR 126 Query: 122 IYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHI 181 + + + PLD E M A L+G +D++SFRA +P R + I Sbjct: 127 MEQCTVPNPFTRNYAWQIFRPLDVEAMRAALAMLVGTHDYSSFRAAGGAPMSPVRTIDEI 186 Query: 182 NVTRHGP-YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATA 240 + G + + N F++HMVRNI+ +++ VG AE+ AA+DR LA+ TA Sbjct: 187 RLEDEGEGRLSCYLHGNGFLYHMVRNIMSTVVSVGQERISVGRFAEIFAARDRRLASPTA 246 Query: 241 KAEGLYLVAVDYP 253 A GLYL+ VDY Sbjct: 247 PACGLYLLHVDYD 259 >UniRef50_A8ZTL2 Pseudouridylate synthase n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZTL2_DESOH Length = 252 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 93/250 (37%), Positives = 135/250 (54%), Gaps = 1/250 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 L IEYDG+ ++GWQ Q ++R+VQ ++ AL+ + + ++V +GRTDAGVH Q Sbjct: 2 KKNFRLIIEYDGACFHGWQIQKDLRTVQGEITGALASITGQAVSVIGSGRTDAGVHAMAQ 61 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V F + +N L DI + + V +FHAR+SA ++ YRY I N L Sbjct: 62 VASFICDTRLEPGTLQKALNGILAKDIVIHDCREVSLNFHARYSAKSKTYRYRILNRNLP 121 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV-TRHG 187 A+ H +PLD M A +LG +DF+SF + R+V Sbjct: 122 AALYRGYAWHIKKPLDLGAMTAALPHILGRHDFSSFEGTGSPKASSVRHVTAATFNMAED 181 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 Y+ +I A+ F+ HMVRNIVG+L+EVG + +A++LAAKDR+ A ATA GL+L Sbjct: 182 GYLAFEITADGFLKHMVRNIVGTLVEVGLGKKTPEAVADILAAKDRSRAGATAPGHGLFL 241 Query: 248 VAVDYPDRYD 257 V V+Y D Sbjct: 242 VRVNYEPSPD 251 >UniRef50_C8WTU3 Pseudouridylate synthase n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WTU3_ALIAD Length = 262 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 91/247 (36%), Positives = 129/247 (52%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 +I L + YDGS ++G+ RQ +R+VQ LE L ++ I V +GRTD GVH QV Sbjct: 5 RRIRLVLGYDGSGFHGFARQEGLRTVQGVLEDELRRMLGVDILVEGSGRTDRGVHARAQV 64 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 VHF+ + LP D+ R V + FHARFS + YRY + L Sbjct: 65 VHFDLPYGPPADRMVHVLRRRLPADLLPRDAGEVDEGFHARFSVVRKTYRYTLDLAPLPS 124 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 + H EPLD M AA+ LLGE+DFTSF A + + R R + + + G Sbjct: 125 LYWYRFSWHHPEPLDLAAMQEAARHLLGEHDFTSFCAAEARQRDKVRRIDRVEFRQDGSR 184 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 + ++ + N F+ +MVR +VG+L++VG + I +L A+DR LA TA GL L Sbjct: 185 LHIEFEGNGFLQYMVRILVGTLVKVGRGQERPDRIPLILEARDRRLAGETAPPHGLCLWN 244 Query: 250 VDYPDRY 256 V+YP Y Sbjct: 245 VEYPPEY 251 >UniRef50_A0L9F6 Pseudouridylate synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9F6_MAGSM Length = 270 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 116/257 (45%), Positives = 157/257 (61%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + + +E+DGS + GWQ Q SVQ+ LE+AL+ + NEPI V +GRTDAGVH TGQ Sbjct: 12 LQRFRITVEFDGSAFSGWQSQQNAPSVQQALEQALAPLHNEPIRVHGSGRTDAGVHATGQ 71 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V HF+ A R A + +N P IAV + V + FHAR+ A R+Y Y I ++ Sbjct: 72 VAHFDAPAHRDAATYLRILNVRTPHSIAVLACQPVAESFHARYDAYYRQYLYRINTRKIP 131 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 PA+ V H+ LDAER+ A+ LLG +DF+SFRA CQS++P + + I + G Sbjct: 132 PALERSRVWHYPYLLDAERLAEASALLLGTHDFSSFRAAGCQSKSPVKFMRLIQWQQRGD 191 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 V I ANAF+ HMVRN+VG+L+ VG + P + +AELLAA+DR A TA A GLYL Sbjct: 192 EWQVSIGANAFLQHMVRNLVGTLVLVGKGDWPVARVAELLAARDRVQAGPTAPAWGLYLT 251 Query: 249 AVDYPDRYDLPKPPMGP 265 + YP P PP+ P Sbjct: 252 HICYPGDQGEPCPPITP 268 >UniRef50_Q6FEV2 tRNA pseudouridine synthase A n=383 Tax=Proteobacteria RepID=TRUA_ACIAD Length = 271 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 129/261 (49%), Positives = 180/261 (68%), Gaps = 1/261 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQN-EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + + A+GIE+ G +Y GWQ Q V S+QE +EK LS++A+EPI + AGRTDAGVH T Sbjct: 2 MQRYAVGIEFCGIRYRGWQTQQAGVPSIQETIEKVLSKIADEPIILHGAGRTDAGVHATN 61 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 V HF+T A+R W +G N+ LP DI+++W+K + DFHARF ATARRYRY++YN Sbjct: 62 MVAHFDTNAIRPQRGWLMGANSQLPKDISIQWIKEMNTDFHARFKATARRYRYVVYNTLN 121 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 RPA+L K VTH Y+ LD ++M AA+ G ++F +FRA CQS P R++ H +TRHG Sbjct: 122 RPALLHKQVTHVYQTLDVDKMMLAARKFEGTHNFETFRAASCQSSQPVRHLSHCRLTRHG 181 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 Y+V+DI+A+ F+HHMVRNI+G L+E+G I + AA+DR A TA A+GLY Sbjct: 182 RYLVLDIQADGFLHHMVRNIMGCLLEIGQGCYEIEHIDTMFAAQDRKAAGVTAPADGLYF 241 Query: 248 VAVDYPDRYDLPKPPMGPLFL 268 + YP+ ++LP+ P+GP +L Sbjct: 242 IQAYYPEHFELPQHPLGPHWL 262 >UniRef50_C6PXV6 Pseudouridylate synthase n=2 Tax=Clostridium RepID=C6PXV6_9CLOT Length = 249 Score = 305 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 136/249 (54%), Gaps = 5/249 (2%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVR-----SVQEKLEKALSQVANEPITVFCAGRTDAGV 63 + + + I+YDGS+Y GWQ+QN ++Q+K+E LS++ E I V GRTD GV Sbjct: 1 MRNLKMLIQYDGSRYKGWQKQNHKDNNSVSTIQDKIESVLSKMTGEDIQVVGCGRTDTGV 60 Query: 64 HGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIY 123 H V +F T ++ + LP DI V+ ++ + FHAR++A ++ Y Y I Sbjct: 61 HAENYVANFHTDSILTVEDMLKYLYEFLPEDIVVKSLRDTSERFHARYNAKSKTYLYTIN 120 Query: 124 NHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV 183 N++ R K H E L+ M AA+ L G +DF SF +++ +++ R + +I++ Sbjct: 121 NNKFRNVFNRKYAYHVEENLNLSEMRDAAEVLTGTHDFQSFTSLKSNTKSTVRTINYISI 180 Query: 184 TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 T + +++ N+F+ +MVR IVG+L++VG S + ++L K R A A A+ Sbjct: 181 TEEHGMIGIEVNGNSFLLNMVRIIVGTLLDVGKGILKPSDVEKILYEKKRAEAGPMAAAK 240 Query: 244 GLYLVAVDY 252 GL L + Y Sbjct: 241 GLCLKDIQY 249 >UniRef50_B8D8Z8 tRNA pseudouridine synthase A n=6 Tax=Enterobacteriaceae RepID=TRUA_BUCA5 Length = 266 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 150/262 (57%), Positives = 192/262 (73%) Query: 7 PPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGT 66 V ALG+EYDGS Y+GWQRQ V S+QE++EKALS +AN I V CAGRTDAGVH Sbjct: 4 KNVKTFALGVEYDGSYYHGWQRQKIVPSIQEEIEKALSIIANHKIDVVCAGRTDAGVHSI 63 Query: 67 GQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 GQV+HF+TTA RK ++W++GVN+ L +I+V WVK V ++FHAR+SA R YRYIIYN+ Sbjct: 64 GQVIHFKTTANRKKSSWSIGVNSYLSENISVVWVKEVTENFHARYSAITRSYRYIIYNYS 123 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 LR A+ + H Y L+ ++MH AQ LLGE+DFTSFRA+ CQS +PWRN+ +NV R Sbjct: 124 LRSAIFQTKLNHIYRKLNVDKMHFEAQFLLGEHDFTSFRALGCQSHSPWRNITKLNVFRF 183 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 +VVVDI AN+F+HHMVRNIVGSL+EVG + E WI +LL KDR+ A ATA A+GLY Sbjct: 184 HNWVVVDITANSFLHHMVRNIVGSLIEVGISKKKEYWIKDLLEKKDRSHAGATAPAKGLY 243 Query: 247 LVAVDYPDRYDLPKPPMGPLFL 268 LV V+YP ++LP+ +F Sbjct: 244 LVYVEYPLHFNLPRSAYTSIFF 265 >UniRef50_C9KPE0 Pseudouridylate synthase n=2 Tax=Veillonellaceae RepID=C9KPE0_9FIRM Length = 264 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 92/262 (35%), Positives = 134/262 (51%), Gaps = 6/262 (2%) Query: 1 MSDQQQPPV----YKIALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVANEPITVFC 55 M + + + I L + YDG+ Y+G+QRQ + +VQ LE+ L + + I + Sbjct: 1 MKREHKAEMKARARNIVLKVAYDGTAYHGFQRQTPPIVAVQNILEEKLQTIFGDTIELAA 60 Query: 56 AGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATA 115 AGRTDAGVH GQVV+F T N+ LP DI VR DF AR SA + Sbjct: 61 AGRTDAGVHAYGQVVNFFTDGRIPVDRIARAANSLLPDDIVVRAAGEADTDFSARHSAKS 120 Query: 116 RRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPW 175 + Y Y I + + ++ + PLD M A +LG +DF++FRA +P Sbjct: 121 KTYVYRIQQGEVPDPMTARYAWYIRRPLDVAAMREALGAILGTHDFSAFRASGGAPMSPV 180 Query: 176 RNVMHINVTR-HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRT 234 R + + G ++ I + F++HMVRNI+G+L VG + E+L +DRT Sbjct: 181 RTMYEATIEEAAGQQLICRIHGSGFLYHMVRNIIGTLANVGLGVLTPARFGEILEGRDRT 240 Query: 235 LAAATAKAEGLYLVAVDYPDRY 256 A+ATA A GLYL VDY + + Sbjct: 241 KASATAPACGLYLEHVDYGEAF 262 >UniRef50_D0LWH9 Pseudouridylate synthase n=2 Tax=Deltaproteobacteria RepID=D0LWH9_HALO1 Length = 264 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 100/247 (40%), Positives = 136/247 (55%), Gaps = 1/247 (0%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 I L +EYDG+ GWQRQN +VQ +E ALS + + + A RTDAGVH GQV Sbjct: 5 RTIRLVLEYDGTGLSGWQRQNNAPTVQAHVEDALSSMLGRAVQIVGASRTDAGVHALGQV 64 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 HF T + + G+N LP IAV V DFHARF + + YRY ++ R Sbjct: 65 AHFRTGSSIPPHGFLRGLNGKLPPAIAVVACAEVRADFHARFDSRGKHYRYALHTRAARA 124 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR-HGP 188 +L + H PLD M RAAQ +LGE DF +FRA C ++T R V + ++R Sbjct: 125 PLLRERAWHCPRPLDLAAMERAAQAMLGERDFQAFRASGCTAKTSRRRVDRVALSRPAAD 184 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + +D+ NAF+ +MVR + G+L++VG I+ +L ++DRT A TA A GL LV Sbjct: 185 LIHIDVYGNAFLRNMVRIMAGTLVDVGLGRLAADEISSILDSRDRTCAGRTAPAHGLTLV 244 Query: 249 AVDYPDR 255 V YP Sbjct: 245 EVFYPAE 251 >UniRef50_A7VWN0 Pseudouridylate synthase n=2 Tax=Clostridium RepID=A7VWN0_9CLOT Length = 251 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 90/249 (36%), Positives = 135/249 (54%), Gaps = 1/249 (0%) Query: 8 PVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + L I YDG Y+GWQ Q SVQE + AL QV + V RTD+GVH Sbjct: 2 EKRNLLLTIAYDGRAYHGWQIQENALSVQEVFQGALRQVIGDDFDVKGCSRTDSGVHANQ 61 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 + +T +N LP D+AV+ ++V DFHAR+S + Y+Y+I+N + Sbjct: 62 YCISLKTGHRIPCERLVAALNRFLPMDMAVKGCRSVSLDFHARYSCKGKEYQYLIWNDPV 121 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQ-CQSRTPWRNVMHINVTRH 186 R L H++ PLD + +++AAQ +G++DFTSF + + R V +V+R Sbjct: 122 RNPFLDGRAFHYWYPLDTDMLNQAAQAFVGKHDFTSFCTLDHRERDNMERMVKCCSVSRE 181 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G V ++A+ F+++MVR +VG+L+ + PE I +L AKDR+ A TA+A GLY Sbjct: 182 GSLVTFRVEADGFLYNMVRIMVGTLLRIAQGKIPEDGIPAILEAKDRSKAGPTARACGLY 241 Query: 247 LVAVDYPDR 255 L V Y + Sbjct: 242 LNRVFYEED 250 >UniRef50_UPI0001C35668 tRNA pseudouridine synthase A n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35668 Length = 404 Score = 303 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 86/252 (34%), Positives = 128/252 (50%), Gaps = 1/252 (0%) Query: 5 QQPPVYKIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTDAGV 63 + + ++YDGS+Y GWQ+Q ++Q KLE L ++ P+ V +GRTDAGV Sbjct: 152 AKKRDKNYKIVLQYDGSRYDGWQKQGNTGNTIQGKLEGILLKLTGRPVEVHGSGRTDAGV 211 Query: 64 HGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIY 123 H Q +F + N LP DIAV V+ V D FH+R +A + Y Y I Sbjct: 212 HALAQTANFHADTGMTEDQIRAYFNQYLPEDIAVLSVEKVQDKFHSRLNAVQKTYLYRIE 271 Query: 124 NHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV 183 + K + L A+RM AA C+LGE+DF SF + ++ R + I + Sbjct: 272 MGPKKDVFERKYCYGLGKQLSADRMKEAAACVLGEHDFKSFCGNKKMKKSTVRTISDITI 331 Query: 184 TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 + G +++ N F++HMVR + G+L+E+G + + E+L DR A TA E Sbjct: 332 EKEGTKLLIRYTGNGFLYHMVRILTGTLIEIGLEERSPQEMKEILLKLDRQAAGFTAPPE 391 Query: 244 GLYLVAVDYPDR 255 GL+L V Y DR Sbjct: 392 GLFLERVMYEDR 403 >UniRef50_D2R418 tRNA pseudouridine synthase A n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R418_9PLAN Length = 285 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 96/251 (38%), Positives = 140/251 (55%), Gaps = 4/251 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + L + YDG+ + GWQ Q R+VQ++LEKA+ + +GRTDAGVH GQ Sbjct: 1 MRTFKLTLAYDGTNFGGWQWQPNRRTVQDELEKAVETITGVRSRFVASGRTDAGVHALGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V F + A G+NA +P DI + V VP FH A +RYRY++ + LR Sbjct: 61 VAAFSSETGIDPAGLLKGLNAKVPDDIFIFDVVEVPLAFHPIRDAVRKRYRYVVQDGPLR 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + H +PLD + M A++ LLGE+DF SF+ T RNV+ I+V R Sbjct: 121 DIFDRQYAWHVRQPLDEQAMLEASRLLLGEHDFASFQTSGSSRLTTERNVLDISVERVDG 180 Query: 189 ----YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 V V+++A+ F+ +MVRNIVG+L+EVG +P +W E+L ++DR A TA A+G Sbjct: 181 ARTSRVHVEVEADGFLFNMVRNIVGTLVEVGKGTRPVAWTREVLESRDRRRAGMTAPAQG 240 Query: 245 LYLVAVDYPDR 255 L+++ V Y Sbjct: 241 LFMIGVHYDAD 251 >UniRef50_Q0AUL4 tRNA pseudouridine synthase A n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=TRUA_SYNWW Length = 249 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 96/247 (38%), Positives = 143/247 (57%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + +I L +EYDGS Y+G+Q Q +VQ +LEKA+ +++ E T+ CAGRTDAGVH GQ Sbjct: 1 MSRIKLLLEYDGSNYHGFQLQKNANTVQAELEKAIYRLSGERATIVCAGRTDAGVHAWGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 VV F++ + W +N+ LP DI V + +F+ RF A + Y Y+IY + + Sbjct: 61 VVAFDSCSTIPGDRWAYALNSQLPEDIQVLESQETRAEFNPRFDALKKCYGYLIYRQKKK 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 EPL E M AA+ L G +F SF A +RT R + H ++ GP Sbjct: 121 ATFYRHYALCNTEPLKLEAMQEAAEILKGRQNFRSFCASGSSARTFEREIFHCRLSEKGP 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 +++ I A+ F+++MVR I G+L+EVG P + E++A++DRT A TA +GLYL+ Sbjct: 181 CLLLHIAADGFLYNMVRIITGTLLEVGKGKYPPQHLREIIASQDRTRAGPTAPPQGLYLL 240 Query: 249 AVDYPDR 255 V YP+ Sbjct: 241 QVFYPED 247 >UniRef50_A7VFR5 Pseudouridylate synthase n=7 Tax=Clostridiales RepID=A7VFR5_9CLOT Length = 273 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 90/249 (36%), Positives = 135/249 (54%), Gaps = 2/249 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I YDG++Y+GW+ + +V ++Q K+E LS +A E + + AGRTDAGVH Sbjct: 25 MQNYRFLIAYDGTRYHGWEHKKDVVTIQGKIESVLSLMAGEEVRINGAGRTDAGVHARAM 84 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V + +N LP DI + V + FHARF+A + YRY IY RL+ Sbjct: 85 VASGPVPTDKTPEEIRDYMNHYLPDDICILEVTPAAERFHARFNAKGKHYRYTIYRGRLK 144 Query: 129 PAVLSKGVTHFY--EPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 P K V E +D ERM +AA L+GE+DF SF + ++ R + I++ Sbjct: 145 PVFDRKYVWTLDEGETIDCERMRKAAAYLVGEHDFKSFCGNKQMKKSTVRKLFAIDIKED 204 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G YV++D F+ +MVR + G+L+EVGA +++ E+L + R LA TA +GL Sbjct: 205 GDYVILDFYGAGFLQNMVRILTGTLVEVGAGRMEPAYMEEVLTGRCRQLAGPTAPPQGLC 264 Query: 247 LVAVDYPDR 255 L+ VDY + Sbjct: 265 LMQVDYEKK 273 >UniRef50_B7K222 tRNA pseudouridine synthase A n=12 Tax=Cyanobacteria RepID=TRUA_CYAP8 Length = 293 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 100/276 (36%), Positives = 145/276 (52%), Gaps = 9/276 (3%) Query: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60 M Q ++AL I+Y GS+++GWQ Q R+VQ ++E A+++V E +T+ AGRTD Sbjct: 1 MKGTQTKEKQRVALVIQYLGSRFHGWQWQPNQRTVQAEIENAIAEVLGETVTLHGAGRTD 60 Query: 61 AGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRY 120 AGVH QV HF+ + + W +NA LP DI +R VP +HARFSA RRYRY Sbjct: 61 AGVHAAAQVAHFDMVSPIPASRWVDILNARLPEDILIRGSAQVPLTWHARFSAQWRRYRY 120 Query: 121 IIYNHRLRPAVLSKGVTHFYE-PLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVM 179 Y + + H+Y PLD M +A LLG + +F + W V Sbjct: 121 TFYTEQRPNLFVKPYSWHYYHFPLDESLMQQALNPLLGRHHLAAFHRAGSRRDHSWVEVQ 180 Query: 180 HINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAAT 239 + R GP++ ++I+AN F++ MVR +VG L+EVG+ + E+ + R Sbjct: 181 STHCHRQGPFIHLEIQANGFLYGMVRLLVGLLVEVGSGKRSLENFTEIWRKQQREAVKYA 240 Query: 240 AKAEGLYLVAVDYPDRYDLPKPP-----MGPLFLAD 270 A A+GL L+ V Y + P PP PLFL + Sbjct: 241 APAKGLCLLRVGYEE---FPFPPSLWFDSQPLFLFN 273 >UniRef50_Q0AGX7 tRNA pseudouridine synthase A n=26 Tax=Proteobacteria RepID=TRUA_NITEC Length = 277 Score = 302 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 119/250 (47%), Positives = 160/250 (64%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 KI L +EYDG Y GWQ+Q + SVQ +LE ALS++A+ I V AGRTDAGVH QVV Sbjct: 2 KIVLILEYDGRGYCGWQKQPDRISVQSRLESALSRIASSQIQVVAAGRTDAGVHALCQVV 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HFET +R AW G NA LP DI+V W V DDFHARFSAT R Y Y + + RP Sbjct: 62 HFETHVIRPLTAWVRGANALLPDDISVLWASEVNDDFHARFSATERTYLYYLLSRPARPG 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + + LD E+M AA+ L+GE+DF++FR+ +CQ++ R ++ +++++ + Sbjct: 122 IFQGKTGWTHYSLDLEKMQTAARFLIGEHDFSAFRSAECQAKNAIRKLVRLDISQSEQFF 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 V + ANAF+HHMVRNI+G+L+ +G P WI LL +DRTLAA T +GLYL V Sbjct: 182 VFEFCANAFLHHMVRNILGALIYIGQGKYPPEWIQILLGKRDRTLAAPTFSPDGLYLAGV 241 Query: 251 DYPDRYDLPK 260 Y R++LP Sbjct: 242 RYDARWNLPT 251 >UniRef50_Q1K346 Pseudouridylate synthase n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K346_DESAC Length = 251 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 100/250 (40%), Positives = 145/250 (58%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + ++ L +EYDG+ Y GWQ Q ++VQE++E AL+QV + V+ +GRTDAGVH Sbjct: 1 MPRLCLTVEYDGTSYGGWQVQPNAQTVQEQIESALAQVIGASVRVYSSGRTDAGVHAIDM 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 HF+ L +A+ GVN LP DI VR V V DDFHARF A + YRY +Y R+R Sbjct: 61 KAHFDVETLLPLSAYREGVNRFLPQDIVVRQVCRVADDFHARFDAQGKWYRYRLYRGRIR 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + H LD E M +AA L+G +DF +F+A C + T R + + + G Sbjct: 121 SPLHRLTSWHVAGGLDVEAMTQAADALVGTHDFAAFQASGCAAATTQRTLFEVLLIDEGD 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 +++D++ + F+ +MVR IVGSL+EVG +AE+LA+ R A TA A+GL L+ Sbjct: 181 ELIIDVRGSGFLKNMVRIIVGSLVEVGRAKLTAGQLAEILASGQRCRAGLTAPAQGLCLM 240 Query: 249 AVDYPDRYDL 258 V Y ++ Sbjct: 241 QVWYEKNIEI 250 >UniRef50_B9TJ99 Pseudouridylate synthase n=4 Tax=cellular organisms RepID=B9TJ99_RICCO Length = 283 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 115/250 (46%), Positives = 160/250 (64%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++ LG+EYDGS++ GWQ Q +VQ+ L+ AL+Q+A + V AGRTDAGVH QV Sbjct: 26 RVVLGLEYDGSRFCGWQSQPSGAAVQDCLQTALAQMAGHEVKVSAAGRTDAGVHALSQVA 85 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+T R AW GVNA LP + V W V +FHARFSA R Y+Y++ + PA Sbjct: 86 HFDTAVTRPQNAWVRGVNAFLPTGVRVLWASEVDVEFHARFSAERRSYQYVLQVSPVAPA 145 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 VLS V ++ PLD + M AA LLGE+DF++FRA +CQ++TP ++++ ++ + + Sbjct: 146 VLSGKVGWYHRPLDLKAMRNAASILLGEHDFSAFRASECQAKTPIKHLIQADIRQFDNVI 205 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + + A+AF+HHMVRN+VGSL+ VG P W+ LL KDR LAA T +GLYL V Sbjct: 206 LFEFTASAFLHHMVRNLVGSLVYVGKGEHPPEWMRTLLEQKDRRLAAPTFMPDGLYLTGV 265 Query: 251 DYPDRYDLPK 260 Y R++LP Sbjct: 266 HYDPRWNLPT 275 >UniRef50_UPI0001973C8C tRNA pseudouridine synthase A n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973C8C Length = 275 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 88/267 (32%), Positives = 136/267 (50%), Gaps = 21/267 (7%) Query: 10 YKIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 I + ++YDGS+Y GWQ+Q ++Q KLE L ++A EP+ + +GRTDAGVH GQ Sbjct: 3 RNIKIVLQYDGSRYDGWQKQGNTKNTIQGKLEAVLEKLAGEPVEIHGSGRTDAGVHALGQ 62 Query: 69 VVHFETTALRKDA--------------------AWTLGVNANLPGDIAVRWVKTVPDDFH 108 V +F + A +N LP DIAV VP+ FH Sbjct: 63 VANFRLEERCLEELVDKTPEKKENGGKASSVSAAVMDYLNRYLPEDIAVISAMEVPERFH 122 Query: 109 ARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQ 168 +R +A + Y Y I + K + E LD M AA+ LLG +DF +F + + Sbjct: 123 SRLNAVEKTYLYQIETAGRKNVFERKYIYGLGEELDLLAMKEAAKLLLGSHDFRAFSSAK 182 Query: 169 CQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELL 228 ++ R + I + R G V+++ N F+++MVR + G+L+E+G H + + + L Sbjct: 183 RMKKSTVRELRKIEIHRDGSRVLLEFTGNGFLYNMVRILTGTLIEIGLHRRTVDSVRKAL 242 Query: 229 AAKDRTLAAATAKAEGLYLVAVDYPDR 255 ++DR A TA AEGL L +V Y ++ Sbjct: 243 ESQDRENAGFTAPAEGLLLKSVRYDEK 269 >UniRef50_C0EKI9 Pseudouridylate synthase n=6 Tax=Neisseriaceae RepID=C0EKI9_NEIFL Length = 281 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 110/270 (40%), Positives = 161/270 (59%), Gaps = 4/270 (1%) Query: 1 MSDQQQ---PPVYKIALGIEYDGSKYYGWQRQN-EVRSVQEKLEKALSQVANEPITVFCA 56 M++Q + + AL + YDGS++YGWQ+Q ++ +VQ LE+ALS +A E I A Sbjct: 1 MTEQANTTGHLMQRWALTLSYDGSRFYGWQKQAGDLPTVQTALEQALSSIAGEQINTIVA 60 Query: 57 GRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATAR 116 GRTD GVH T QVVHF+T+ R + AW GVNA+LP +AV + V FHARF A R Sbjct: 61 GRTDTGVHATAQVVHFDTSVSRPEQAWVRGVNAHLPDGVAVLVAQKVAPHFHARFDAYGR 120 Query: 117 RYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWR 176 YRY++ + +R +L V + LD M +AA L GE+DF+SFRA +CQ+++P + Sbjct: 121 HYRYLLESSPVRSPLLVGRVGWTHLKLDLNLMRQAAALLEGEHDFSSFRAAECQAKSPVK 180 Query: 177 NVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLA 236 + ++ Y+ +D+ NAF+HHMVRNI+G+L+ VG+ + AK R A Sbjct: 181 TLYSTKISGTSRYLCLDLHGNAFLHHMVRNIMGALVYVGSGRISVDEFESVFHAKSRLKA 240 Query: 237 AATAKAEGLYLVAVDYPDRYDLPKPPMGPL 266 T ++GLYL VDYPD + + + + Sbjct: 241 PPTFMSDGLYLTGVDYPDEFGVTQLSLPEW 270 >UniRef50_B0TC90 Pseudouridylate synthase n=3 Tax=Clostridiales RepID=B0TC90_HELMI Length = 259 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 97/254 (38%), Positives = 144/254 (56%), Gaps = 4/254 (1%) Query: 10 YKIALGIEYDGSKYYGWQRQNE--VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 ++ L + YDG+ Y+G+Q Q + ++Q+ L +A+ + E + V CAGRTDAGVH G Sbjct: 4 RRLKLTVAYDGTCYHGFQTQENPALPTIQDALVRAIKVLTGEEVKVNCAGRTDAGVHARG 63 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QVV F T++ D + +NA LP D+AV KTVP FH+RF A + YRY IYNHR+ Sbjct: 64 QVVDFVTSSPIPDDRFPFAMNAILPPDVAVVAAKTVPLAFHSRFGALGKHYRYTIYNHRI 123 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + + PL E M AAQC +G +DF F A + R V ++TR Sbjct: 124 PSPFHRRYSHQVFPPLQFEAMAAAAQCFVGTHDFRGFCATGSPVKDFVRTVYRCDLTRQE 183 Query: 188 PY-VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 + +V+D+ N F+++M+R I G+L++VG I ++A++DRT A TA +GL Sbjct: 184 EHRLVLDVMGNGFLYNMIRIIAGTLIDVGKGKIALEEIPAIIASRDRTRAGMTAPPQGLC 243 Query: 247 LVAVDYPDRYDLPK 260 L+ V + D D P Sbjct: 244 LMKVWH-DPLDFPF 256 >UniRef50_UPI00016C512A tRNA pseudouridine synthase A n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C512A Length = 263 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 103/255 (40%), Positives = 151/255 (59%), Gaps = 2/255 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEP-ITVFCAGRTDAGVHGTG 67 + + L I YDG+ ++GWQ Q R+VQE +EKA++++ EP + + C+GRTD+GVH G Sbjct: 1 MRNLKLIIRYDGTDFFGWQTQPGRRTVQETVEKAIAEITREPRVRLNCSGRTDSGVHAVG 60 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QV + T + A +NA LP D+ VR V P F A A + YRY++ + RL Sbjct: 61 QVANVYTASKLSCAVLLKAINAKLPEDVGVREVTEAPQSFCANKDAVRKMYRYVVQDGRL 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + L K + L+AE M RA++CL+G +DF F T R + H++V R G Sbjct: 121 QDPFLRKYAWFVRQHLNAEAMARASRCLVGRHDFRCFETEWPNRLTSVRTITHLSVNRFG 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + +D++AN F+++MVR I GSL++VG PE+ IA++L A DR LA TA EGL+L Sbjct: 181 ECIWIDVEANGFLYNMVRAIAGSLVQVGRGFWPETQIADVLHAMDRRLAGPTAPPEGLFL 240 Query: 248 VAVDYPDRY-DLPKP 261 + V YP+ D P P Sbjct: 241 MRVTYPESGADRPAP 255 >UniRef50_Q250I7 Pseudouridylate synthase n=2 Tax=Desulfitobacterium hafniense RepID=Q250I7_DESHY Length = 271 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 89/261 (34%), Positives = 134/261 (51%), Gaps = 4/261 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQN--EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGT 66 I L + YDG+ Y+G+QRQ ++Q LE +++ E +T+ AGRTD GVH Sbjct: 4 KRNICLKVAYDGTYYHGFQRQPEFHGPTIQGTLEAVWAKLVEEEVTLNTAGRTDTGVHAA 63 Query: 67 GQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 GQVV+F T A N+ LP DI + + ++FHARFSA +RY Y I NH Sbjct: 64 GQVVNFRTGARIPVDKIPKAFNSLLPRDIRILAAQEAAENFHARFSAKWKRYDYRIDNHP 123 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 + H LD +RM + AQ L+G ++F +F A S+T R + V + Sbjct: 124 VADVFTRLYSLHEPVRLDWQRMQQGAQYLVGRHNFKAFSAAGGTSKTFERTLYLCQVAEN 183 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 ++ + + F+++MVR I G+L+ VG + I ++LA+ DR TA +GL Sbjct: 184 QGHLRITCIGDGFLYNMVRIIAGTLVYVGKNRIQPGEIPDILASLDRKRGGVTATPQGLT 243 Query: 247 LVAVDYPDRYDLPKPPMGPLF 267 L V Y + +LP+ LF Sbjct: 244 LSYVHYGE--ELPRDIFPELF 262 >UniRef50_C0X1G0 Pseudouridylate synthase n=36 Tax=Enterococcus RepID=C0X1G0_ENTFA Length = 277 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 98/246 (39%), Positives = 143/246 (58%), Gaps = 1/246 (0%) Query: 8 PVYKIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGT 66 P+ I L IEYDG +Y GWQR +++Q K+E L+Q+ EPI + +GRTDAG H Sbjct: 31 PMRNIKLTIEYDGKRYSGWQRLGNSEKTIQGKIESILTQMTGEPIEIIGSGRTDAGTHAR 90 Query: 67 GQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 GQV +F+TT+ +N LPGDI V+ V +P+ FHAR++AT ++Y Y ++N Sbjct: 91 GQVANFKTTSSLTTTEMLSFLNRYLPGDIVVKEVTEMPERFHARYNATGKQYSYYVWNSP 150 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 + A HF + LD E+M +A Q L+G +DF F A++ ++ R + I + R Sbjct: 151 IPNAFERYHSFHFPKALDQEKMEQACQKLIGTHDFIGFSALKKTKKSTTRTIEKITIERD 210 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G + N F+H MVR +VG+L+E+GA + + I EL A K R A TA A+GL+ Sbjct: 211 GEMLQFTFVGNGFLHKMVRILVGTLLEIGAGTKELAIIDELFATKVREGAGETAPAQGLF 270 Query: 247 LVAVDY 252 L V Y Sbjct: 271 LDEVYY 276 >UniRef50_Q813Z9 tRNA pseudouridine synthase A 2 n=77 Tax=Firmicutes RepID=TRUA2_BACCR Length = 245 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 82/245 (33%), Positives = 134/245 (54%), Gaps = 1/245 (0%) Query: 9 VYKIALGIEYDGSKYYGWQR-QNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 ++ L I+YDG+++ GWQR N ++Q K+E +S++ + I + RTDAGVH Sbjct: 1 MHNYKLTIQYDGARFKGWQRLGNNDNTIQGKIESVISEMVGKEIEIIGCSRTDAGVHALN 60 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QV +F++ + +N LP DI++ V+ V D FHAR+++ A+ Y Y I+N Sbjct: 61 QVANFQSDEKLVEHKVKKYLNQYLPNDISITNVEEVHDRFHARYNSKAKTYLYKIWNEEH 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + K H + L+ + M AA+ L+G +DFT+F + + ++ R V ++V Sbjct: 121 TNPFMRKYSMHVNKKLNVKSMKAAAKHLVGSHDFTAFSNAKSKKKSMVREVYTLDVMEEA 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 +V + + N F+H+MVR IVG+L+EVG I +L K R A+A GLYL Sbjct: 181 GFVQIRVSGNGFLHNMVRKIVGALIEVGLGQLDAEAIPNILEEKQRNQINCLAEASGLYL 240 Query: 248 VAVDY 252 V++ Sbjct: 241 ENVEF 245 >UniRef50_A8W1A9 Pseudouridylate synthase n=2 Tax=Bacillus RepID=A8W1A9_9BACI Length = 261 Score = 298 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 127/248 (51%), Gaps = 1/248 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN-EPITVFCAGRTDAGVHGTG 67 + ++ + IEYDGS + G+Q+Q R+VQ +LE+ALS + E +GRTD GVHG Sbjct: 1 MRRMLIRIEYDGSGFNGYQKQPNARTVQGELERALSVMHKAESWPCTSSGRTDTGVHGVR 60 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 Q VHF++ D W + +N+ LP DI V V FHAR+ + YRY + + Sbjct: 61 QPVHFDSPLTIPDERWPMALNSLLPDDIQVLGAMEVDASFHARYDTVGKVYRYRVDTAKR 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + HF +D E M AA+ L G +DFTS + + + R + +++ Sbjct: 121 QTVFRRSFAAHFPGNMDIEAMREAAKHLEGTHDFTSLSSPKTDVKDKVRTLFAVSLEERE 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 V + F++ MVR ++G+L++VG+ + P I ++ ++R A TA GLYL Sbjct: 181 DGFDVVFAGSGFLYQMVRILMGTLIKVGSGDWPPDVIPAIIEKQERQAAGPTAPGHGLYL 240 Query: 248 VAVDYPDR 255 V Y Sbjct: 241 EDVFYTKE 248 >UniRef50_Q1QY44 Pseudouridylate synthase n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QY44_CHRSD Length = 290 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 142/254 (55%), Positives = 173/254 (68%) Query: 16 IEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETT 75 +EYDGS Y GWQR SVQ LE ALS++AN P+ V C+GRTD+GVH T QVVHF+ Sbjct: 3 VEYDGSAYCGWQRLKHAASVQGTLEAALSRIANAPVQVLCSGRTDSGVHATRQVVHFDAP 62 Query: 76 ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKG 135 R AW G NANLP D+AVRWV V DDFHAR SA ARRYRY+I N RP + Sbjct: 63 VTRTQKAWLFGANANLPRDVAVRWVVPVADDFHARLSALARRYRYVILNQPSRPVLERAN 122 Query: 136 VTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIK 195 T EPLDAERMH AAQ L+GE+DF+SFRA CQS++ WR+V I V R+G VV+DI+ Sbjct: 123 ATWCREPLDAERMHAAAQALVGEHDFSSFRAAGCQSKSRWRHVHFIEVRRYGQLVVIDIQ 182 Query: 196 ANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPDR 255 ANAF+HHM+RNI G+L+ VG + ++ ELLA +DRT TA GL+ V Y +R Sbjct: 183 ANAFLHHMIRNIAGALVAVGRGDHSTGYLGELLALRDRTQGNVTAPGCGLHFVDALYDER 242 Query: 256 YDLPKPPMGPLFLA 269 + LPK P+GP LA Sbjct: 243 FVLPKEPLGPNLLA 256 >UniRef50_A6NVS7 Pseudouridylate synthase n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NVS7_9BACE Length = 249 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 129/247 (52%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + IAL + Y G+ Y+GWQ Q +V+E LEKA++ V P+ AGRTDAGVH Sbjct: 1 MRNIALKLMYVGTAYHGWQIQKNAVTVEETLEKAIASVVGHPVKCTGAGRTDAGVHAENY 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 + +F TT+ L VN LP DI V V D F+A S + Y Y IYN R+R Sbjct: 61 IANFRTTSTIPCDRLPLAVNTRLPEDIVVVKATEVHDGFNAIGSCIKKEYTYRIYNSRIR 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 A + + LD + M AA +G +DF + ++V + ++ R V + N+TR G Sbjct: 121 NAFFVNRAWFYPKHLDEKVMQAAADRFVGTHDFAAVQSVGTEVQSTVRTVHYFNMTRSGD 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + + AN F+++MVR +VG+ + P ++++L + RT A TA GLY+ Sbjct: 181 MIECRVCANGFLYNMVRAMVGTCVYAAEGKFPPEAVSDILEGRCRTAAGPTAPPGGLYMT 240 Query: 249 AVDYPDR 255 + Y + Sbjct: 241 KLWYEED 247 >UniRef50_C0GG81 Pseudouridylate synthase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GG81_9FIRM Length = 246 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 134/247 (54%), Gaps = 1/247 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I L + YDG+ Y+G+Q Q +VQ+KLE+A+ +V + + + +GRTD GVH TGQ Sbjct: 1 MPNIKLTLGYDGTGYHGFQLQKNAVTVQQKLEEAIEKVMGQKVRITASGRTDTGVHATGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V++F +NA LP DI + + V D FHARF A + Y Y I N Sbjct: 61 VINFFAQTGIPPQRIPHALNAVLPRDIVIYAAEIVSDSFHARFDAVGKTYTYTIDNGAHP 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + H PLDA M +AA L G++DFTSF A +T RN+ ++V + P Sbjct: 121 QVLSRHHAYHVRFPLDANLMKQAAATLQGKHDFTSFMASGSSVKTTVRNLYRLDVEINWP 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Y+ + A+ F+++MVR I G+L+EVG + + ++ AK+R A T A GL L Sbjct: 181 YITITAAADGFLYNMVRIIAGTLIEVGRGKRD-HNLGPVIDAKNRHRAGWTVPAHGLVLR 239 Query: 249 AVDYPDR 255 V+Y + Sbjct: 240 EVEYNKK 246 >UniRef50_Q6ANM1 tRNA pseudouridine synthase A 1 n=1 Tax=Desulfotalea psychrophila RepID=TRUA1_DESPS Length = 251 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 84/251 (33%), Positives = 129/251 (51%), Gaps = 7/251 (2%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I L I +DG+ Y GWQ+Q+ ++Q ++E L +++ + I++ AGRTDAGVH G Sbjct: 1 MRNICLLIAFDGTDYSGWQKQHHANTIQGEIEARLKRLSVKEISLHGAGRTDAGVHADGM 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 HF T + +N LPG I + V+ + DDFHARF+AT + Y Y ++ + Sbjct: 61 TAHFHTDTRLTCNDFQRALNRMLPGAIRILQVREMADDFHARFAATGKEYHYRLFTGGVI 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTP------WRNVMHIN 182 P + H +P+D E M + Q ++G +DF+SF + +T R ++ Sbjct: 121 PPQKRLYMLHQEKPIDQEAMQKCLQIIIGTHDFSSFENTGSRDKTRTGGKGAVRTILEAR 180 Query: 183 VTR-HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAK 241 + + F+ +MVRNIVGS++EVG + W + L KDR A TA Sbjct: 181 YEQFEEDSWHFVFIGDGFLRNMVRNIVGSILEVGRGKESVEWFEQALKEKDRNAAGPTAP 240 Query: 242 AEGLYLVAVDY 252 A GL L V Y Sbjct: 241 AHGLKLFQVFY 251 >UniRef50_B1I1B5 tRNA pseudouridine synthase A n=5 Tax=Clostridia RepID=TRUA_DESAP Length = 250 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 86/248 (34%), Positives = 136/248 (54%), Gaps = 3/248 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNE--VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGT 66 + + L + YDG+ Y+G+Q+Q+ + ++QE LE+ L++++ + V A RTDAGVH Sbjct: 1 MPNVRLTLAYDGTAYHGFQKQSGSGLPTIQETLERCLAELSGAALKVTGASRTDAGVHAR 60 Query: 67 GQVVHFET-TALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 GQVV+F T +N LPGDIA + VP DFHAR+SA A+ Y Y +YNH Sbjct: 61 GQVVNFVTGRWGIPTERIPAALNGVLPGDIAALDAREVPADFHARYSAVAKTYSYTLYNH 120 Query: 126 RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR 185 +R H LD M AA+ L+G +DF++F+A ++ R + ++ Sbjct: 121 PVRSPFQRLYSLHVPRALDLRAMRLAARHLMGRHDFSTFQAAGRPVQSAVRTLTRADIEA 180 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 P V + +A+ F+++MVR + G+L+EVG + +++A+ DR A T GL Sbjct: 181 QAPLVRLVFRADGFLYNMVRIMAGTLLEVGLERLDPEALPDIIASGDRARAGPTVPPHGL 240 Query: 246 YLVAVDYP 253 L V+Y Sbjct: 241 CLEEVEYD 248 >UniRef50_A1AXN3 Pseudouridylate synthase n=3 Tax=Bacteria RepID=A1AXN3_RUTMC Length = 247 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 110/243 (45%), Positives = 165/243 (67%), Gaps = 1/243 (0%) Query: 11 KIALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 KIALG+ Y G+ ++GWQ Q +R+VQ+ +E+ALS VAN P+ VFC+GRTDAGVH T QV Sbjct: 2 KIALGVAYLGTNFHGWQCQKPNIRTVQQVVEQALSSVANHPVRVFCSGRTDAGVHATCQV 61 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 +HFET R++ W G NANLP D+ WVK V D+FHARFSA AR+Y Y I+N ++R Sbjct: 62 IHFETNIKRENKVWLFGGNANLPSDVNFTWVKHVNDNFHARFSAIARQYNYKIHNTKVRC 121 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 ++++ + LD M++A++ L+G+++F++FR CQ+++ + + I + + Sbjct: 122 SIITAHSLWESKKLDIMAMNKASKYLIGKHNFSAFRGSLCQAKSSIKTIEFIKLNKCDDN 181 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 +++DIKA+AF+HHMVRNIVG+L++VG + W+ E+L K R AA A + GLY + Sbjct: 182 ILLDIKADAFLHHMVRNIVGTLLKVGKGEKSIEWVKEILDNKQRKQAAPAAPSHGLYFIK 241 Query: 250 VDY 252 Y Sbjct: 242 AFY 244 >UniRef50_Q2RNZ9 tRNA pseudouridine synthase A n=113 Tax=Alphaproteobacteria RepID=TRUA_RHORT Length = 278 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 102/259 (39%), Positives = 141/259 (54%), Gaps = 2/259 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + L +EYDG Y GWQRQ+ ++Q+ LE+A ++ V +GRTD+GVH GQ Sbjct: 1 MVRYRLTVEYDGRGYCGWQRQDNGPTIQQSLEEAAFRLCGVATRVHGSGRTDSGVHALGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANL-PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 V H + A +NA+L P IAV V +DFHARFSA R YRY I N Sbjct: 61 VAHLDLPRAYGAATVMKALNAHLRPQPIAVIDAAEVAEDFHARFSAEERSYRYRILNRIA 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 P + V P++A M AAQ L+G +DF+SFRA +CQ+ +P + + + VTR G Sbjct: 121 PPTLDQGRVWWVARPMEAAIMDEAAQVLVGRHDFSSFRAAECQADSPVKTLSELRVTRVG 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + V +A +F+HH VRN+VG+L VG + L A DR+ A TA +GLY Sbjct: 181 DEIHVFARARSFLHHQVRNMVGTLALVGDGRWTADRLRAALEACDRSAAGPTAPPDGLYF 240 Query: 248 VAVDYPDRYDLPKPPMGPL 266 + V +P P GPL Sbjct: 241 LRVRFPGETAAPA-KAGPL 258 >UniRef50_B1XV49 tRNA pseudouridine synthase A n=97 Tax=Betaproteobacteria RepID=TRUA_POLNS Length = 276 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 113/269 (42%), Positives = 163/269 (60%), Gaps = 10/269 (3%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANE------PITVFCAGRTDAGVH 64 +IALG++YDGS Y GWQ Q +VQ +LEKA+S E PI AGRTD GVH Sbjct: 2 RIALGLQYDGSPYSGWQTQVNHNTVQNELEKAISAFVGEQACVVKPINTITAGRTDTGVH 61 Query: 65 GTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYN 124 GQVVHF+T R+D +W GVN+ L I + W K V ++F ARFSA R Y Y ++ Sbjct: 62 ALGQVVHFDTNVEREDFSWVRGVNSFLSSSIVINWAKPVSEEFCARFSAYEREYIYALHA 121 Query: 125 HRLRPAVLSKGVTHF----YEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMH 180 R + + + D E M ++A+CL+GE+DF+SFR+ +CQS+TP + + Sbjct: 122 GPCRSPMAHSRAGYLMLPPSQWFDIEAMQKSAECLIGEHDFSSFRSSECQSKTPIKTIYL 181 Query: 181 INVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATA 240 I + P++ I+ NAF+HHM+RN+VG +++G Q W+AE+LAAK+R +AA T Sbjct: 182 IEIISKQPWLYFRIRGNAFLHHMIRNLVGCFLQIGQGKQTSQWMAEVLAAKNRQIAAPTF 241 Query: 241 KAEGLYLVAVDYPDRYDLPKPPMGPLFLA 269 A+GLYL + YP + +P+P + +L Sbjct: 242 MADGLYLAKITYPQEFAIPQPWLKSSWLP 270 >UniRef50_B9JQX0 tRNA pseudouridine synthase A n=19 Tax=Alphaproteobacteria RepID=TRUA_AGRVS Length = 259 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 92/252 (36%), Positives = 137/252 (54%), Gaps = 3/252 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + L +EYDG+ Y GWQRQ+ SVQ LE A+ + E + + AGRTD+GVH +GQ Sbjct: 1 MPRYKLTVEYDGTPYVGWQRQDNGPSVQGALEAAVLGLTGETVAIRGAGRTDSGVHASGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGD---IAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 V H + +NA+L I++ + VPD F ARFSA R Y Y I + Sbjct: 61 VAHVDLLRQWIPYKLRNALNAHLAQAGQAISILAAEAVPDAFDARFSALKRHYLYRIMSR 120 Query: 126 RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR 185 R A+ + +PLD E MH AAQ L+G +DFT+FR+V CQ+ +P R + ++V+R Sbjct: 121 PSRLALEANRAWWVSKPLDHEAMHAAAQMLVGNHDFTTFRSVHCQAISPVRTLDRLDVSR 180 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 +G + + A +F+H+ +R+ G+L G + L A+DR A +GL Sbjct: 181 NGDLIEIRASAQSFLHNQIRSFAGTLKMAGEGKMTPEDVRAALEARDRKACGPVAPPQGL 240 Query: 246 YLVAVDYPDRYD 257 Y + VDYP + Sbjct: 241 YFLQVDYPTDGN 252 >UniRef50_A7HKV8 tRNA pseudouridine synthase A n=11 Tax=Thermotogaceae RepID=TRUA_FERNB Length = 246 Score = 296 bits (758), Expect = 7e-79, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 134/246 (54%), Gaps = 2/246 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + ++A+ YDG+ ++G+Q QN VR+VQ +LEKAL +V I + AGRTD GVH GQ Sbjct: 1 MRRVAIEFSYDGTDFFGYQIQNNVRTVQGELEKALEKVFKIHIDTYAAGRTDTGVHANGQ 60 Query: 69 VVHFETT-ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 VV F+ + +NANLPGDI ++ V F+ R+ A R Y Y I + Sbjct: 61 VVSFDCPNDRLMENDIKNAINANLPGDIYIKKVWFTHPTFNPRYEAKRRIYHYYIDTSKS 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR-H 186 + + V F LD E+M AA+ L+GE+DF SF ++ R + ++ + Sbjct: 121 KNLFTRRYVWWFPYELDIEKMRIAAKYLIGEHDFISFSKKGEENTKTIRTINNLRIIEIK 180 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 +++ ++ +F+ MVR+IV +L+ VG + E+L +KDR+ +A A A GL+ Sbjct: 181 NGLILIRVEGISFLRGMVRSIVANLVRVGTGIWEPEKVKEVLESKDRSKSAGLAPAHGLF 240 Query: 247 LVAVDY 252 L V + Sbjct: 241 LYKVLF 246 >UniRef50_B3E0A0 tRNA pseudouridine synthase A n=1 Tax=Methylacidiphilum infernorum V4 RepID=TRUA_METI4 Length = 255 Score = 295 bits (757), Expect = 9e-79, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 133/247 (53%), Gaps = 1/247 (0%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 L + Y GS ++GWQRQ E+ +VQ LE+A++++ EPI V AGRTDAGVH GQV Sbjct: 8 YKLTLSYCGSGFHGWQRQGELPTVQRALEEAVAKIWEEPIPVEGAGRTDAGVHAKGQVAS 67 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 F + +N +LP + V + VP +F ARF A ++ Y+Y+++N + Sbjct: 68 FAAPRKLEPEVLKRALNYHLPDTVRVWDARIVPREFSARFDAVSKTYQYLLWNDPVMDPF 127 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSF-RAVQCQSRTPWRNVMHINVTRHGPYV 190 H +D E M+ AA+ LG+++F +F + P R V+ G V Sbjct: 128 YLGRAWHIPRAMDVEMMNEAARLFLGKHNFAAFVSNPGMPVKNPVRTVLDCFFLEQGSLV 187 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 ++KA+ F++ MVRN+VG+L++VG + ++ + R A A A GLYL+AV Sbjct: 188 FFNVKADGFLYRMVRNMVGALVKVGLGRLSRQELKKIFENQKRIEAFAAAPPWGLYLLAV 247 Query: 251 DYPDRYD 257 DYP + Sbjct: 248 DYPPDQE 254 >UniRef50_Q7TU07 tRNA pseudouridine synthase A n=1 Tax=Rhodopirellula baltica RepID=TRUA_RHOBA Length = 276 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 87/275 (31%), Positives = 140/275 (50%), Gaps = 15/275 (5%) Query: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTD 60 M +P L + YDG++Y GWQ Q E RS+Q +LE+ + +A P+ V +GRTD Sbjct: 1 MQANDRP--RTFHLTVAYDGTEYCGWQVQPEQRSIQSELERVIRPLAGRPVRVLGSGRTD 58 Query: 61 AGVHGTGQVVHFETTALR-KDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYR 119 AGVH GQV + A +N+ LP DI V+ V+ + FH AT ++Y+ Sbjct: 59 AGVHAIGQVARCVLPVWKADTVALQRAINSKLPNDIRVKAVRETRERFHPIADATGKQYQ 118 Query: 120 YIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVM 179 Y++ R ++ V P+D M AA +G +DF +F+ + + R + Sbjct: 119 YLVQVGGSRDPFANRFVNRVGGPIDHSAMQSAAAKFVGRHDFKAFQGTGAERPSTVRTIH 178 Query: 180 HINVTR-----------HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELL 228 G + +I F+++MVRN++G+++EVG + +WI E+L Sbjct: 179 SARWIPRVATGPTGAELEGEHWCFEIDGEGFLYNMVRNLMGTMLEVGRGKKSPNWIDEVL 238 Query: 229 AAKDRTLAAATAKAEGLYLVAVDYPDR-YDLPKPP 262 A++DR +A TA +GL+L VDYPD + + +P Sbjct: 239 ASRDRKMAGPTAPPQGLFLCRVDYPDEVFQVEEPD 273 >UniRef50_D1VSK1 Pseudouridylate synthase n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSK1_9FIRM Length = 243 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 80/242 (33%), Positives = 136/242 (56%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 I + + YDG+ Y+G+Q QN++++++ +L KA++ + ++ AGRTD GVH GQ V Sbjct: 2 NILIKVTYDGTNYHGYQVQNKLKTIEGELSKAINNTLKKETKIYSAGRTDRGVHALGQYV 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 +F T +N +LP DI+V K VP DFHARFSA + YRY++YN++ R A Sbjct: 62 NFYTDTTIDLGNLPRVINFHLPDDISVISAKEVPFDFHARFSAKEKIYRYVVYNNKYRNA 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + + LD M+ + + L+G+ DF SF + R + I V + ++ Sbjct: 122 IYHNRAYQYPFSLDLSLMNESFKYLIGQKDFKSFMGRDAIVKDTIRTIYSIKVKKDNKFI 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 D + +F+ +M+R I+G+ +E+G + ++ E+L ++R A TA + GLYL+ + Sbjct: 182 YFDFQGKSFLKNMIRIIMGTAIEIGRGKKDPIFMKEVLEKQNRKYAGPTAPSCGLYLMNI 241 Query: 251 DY 252 Y Sbjct: 242 LY 243 >UniRef50_Q45557 tRNA pseudouridine synthase A n=5 Tax=Firmicutes RepID=TRUA_BACSV Length = 244 Score = 294 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 133/245 (54%), Gaps = 2/245 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEV-RSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + L I+YDG +Y GWQR ++Q K+E LS++ I + +GRTDAGVH G Sbjct: 1 MNNYKLMIQYDGGRYKGWQRLGNGENTIQGKIETVLSEMVGRKIEIIGSGRTDAGVHALG 60 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QV + + + +N LP DI+V V VPD FH+R++A + Y Y I+N Sbjct: 61 QVANVKLSENFTVKEVKEYLNRYLPHDISVTEVTLVPDRFHSRYNAKDKTYLYKIWNEDY 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + K H + L + M +A+Q +GE+DFT+F + + +T R + I + + Sbjct: 121 THPFMRKYSLHIEKKLHIDNMVKASQLFVGEHDFTAFSNAKSKKKTNTRTIHSITIQDNQ 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 ++ + + + F+++MVR +VG+L+EVG + + +L +KDR+ A A A GLYL Sbjct: 181 GFIDIRVCGDGFLYNMVRKMVGTLIEVGLGEKEPEQVLTILESKDRSQAGF-ADATGLYL 239 Query: 248 VAVDY 252 + + Sbjct: 240 EGISF 244 >UniRef50_B9XDA1 Pseudouridylate synthase n=1 Tax=bacterium Ellin514 RepID=B9XDA1_9BACT Length = 270 Score = 294 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 84/255 (32%), Positives = 129/255 (50%), Gaps = 4/255 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 K L I YDG Y GWQ Q VQ+++E+AL+++ + + RTD GVH G V Sbjct: 5 KFKLTIAYDGKNYSGWQVQKSGIGVQQRVEEALTKLFPSVGRIHSSSRTDTGVHAIGMVA 64 Query: 71 HFETTA---LRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 H E L +NA+LP DI V + V DFHARF A ++YRY ++N Sbjct: 65 HMEIPKAEFRMTSEKLALAINAHLPEDIRVMSAQKVAADFHARFDAAGKQYRYFVWNQTA 124 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQC-QSRTPWRNVMHINVTRH 186 +L + + LD + M AA+ G++DF SF A + + + R + ++ + Sbjct: 125 MNPLLREQAWQVPKELDLKAMRSAAKLFPGKHDFRSFAASRNYEVESTVRTLARCDIKKS 184 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G + I+ + F++ M R IVG+L++VG + I ++L +DR +A TA A GL Sbjct: 185 GSLLTFIIEGDGFLYKMCRGIVGTLVQVGQGKIAAADIKKILETRDRRVAGMTAPAHGLV 244 Query: 247 LVAVDYPDRYDLPKP 261 L V Y + + P Sbjct: 245 LWKVFYKSKAKVSVP 259 >UniRef50_C5RHY1 Pseudouridylate synthase n=1 Tax=Clostridium cellulovorans 743B RepID=C5RHY1_CLOCL Length = 245 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 80/245 (32%), Positives = 128/245 (52%), Gaps = 1/245 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEV-RSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + L I+YDG Y GWQ+ ++ +++Q KLEK LS + +E + V +GRTDAGVH Sbjct: 1 MNNYKLTIQYDGKNYRGWQKLSDSDKTIQSKLEKVLSTLVDEEVNVIGSGRTDAGVHARK 60 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 Q+ +F T K LP DI V+ V + FHAR++A + Y Y I N Sbjct: 61 QIANFHTEKDLKWKDVLKHCYTYLPEDIVVKSCDKVDEKFHARYNAKKKIYTYRICNSAF 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 A K + L+ ++M A++ +G +DF SF +++ + ++ R + I++ G Sbjct: 121 GDAFERKYSYLVDKKLNIDKMLAASKYFIGIHDFKSFTSMKSKKKSTVREIYDISINCIG 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 V + F+H+M+R + G+L+EVG I ++ +R+ A TA A GL+L Sbjct: 181 DMVEITYIGEGFLHNMIRILTGTLIEVGLGKMKIDEIPTIMDGLERSDAGFTAPAHGLFL 240 Query: 248 VAVDY 252 V V Y Sbjct: 241 VDVIY 245 >UniRef50_A4BHD0 Pseudouridylate synthase n=1 Tax=Reinekea blandensis MED297 RepID=A4BHD0_9GAMM Length = 286 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 117/261 (44%), Positives = 169/261 (64%), Gaps = 2/261 (0%) Query: 10 YKIALGIEYDGSKYYGWQRQN-EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 ++I L +EY G+ ++GWQ Q V ++Q LE A+++VA+EP++ AGRTDAGVH T Q Sbjct: 14 HRIVLCLEYKGTAFHGWQIQKSGVSTIQAALEAAIAKVADEPVSTIVAGRTDAGVHATNQ 73 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 +VHF+T A R D W +G+N LP DI+V+WV V + FHARFSA R YR+II+N+ ++ Sbjct: 74 IVHFDTRAQRSDYGWKMGINGRLPDDISVKWVTQVDEHFHARFSAQERAYRFIIHNNWVK 133 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 A+L + T LD M +AA LLG +DF+SFRA +CQ+ +P R + + V R G Sbjct: 134 SALLHEVTTWEQYELDVGLMQQAANRLLGTHDFSSFRAAECQAHSPVRTLRELTVARFGE 193 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 ++V+ +A+ F+HHMVRN+VG ++ +G +P W +++L KDR TAK GLY V Sbjct: 194 FIVIQARADGFLHHMVRNLVGVMLPIGRGRKPVDWASDVLNYKDRRRGGVTAKGNGLYFV 253 Query: 249 AVDYPDRYDLPKPPMGPLFLA 269 Y + DLP GP FL+ Sbjct: 254 RASY-NVGDLPSADPGPAFLS 273 >UniRef50_Q03PY8 tRNA pseudouridine synthase A n=21 Tax=Lactobacillales RepID=TRUA_LACBA Length = 265 Score = 293 bits (750), Expect = 6e-78, Method: Composition-based stats. Identities = 85/267 (31%), Positives = 136/267 (50%), Gaps = 10/267 (3%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEP---ITVFCAGRTDAGVHG 65 + + + + YDG+ + G+QRQ R+V+ L ++++A +P I ++ +GRTDAGVH Sbjct: 1 MQRYKVTLMYDGTNFAGFQRQPNKRTVESTLTDVVNKMAKQPDPAIVIYGSGRTDAGVHA 60 Query: 66 TGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 QVVHF+ L G+N+ LP D+ V V+ V FHAR+ + ++Y+Y + Sbjct: 61 LAQVVHFDFPFLIPADNMRKGLNSMLPMDMEVLKVEEVAPTFHARYDVSGKQYQYRMDMG 120 Query: 126 RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMH--INV 183 R H+ P+D +++ A L+GE+D+TSF A Q+RT R + ++ Sbjct: 121 EFRNPFKRNYTGHWKFPVDLAKINVALADLVGEHDYTSFVASGAQTRTFVRTIYEATCHI 180 Query: 184 TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 +V + N F+++ VR +VG L+E+G+ +P + L KDR A T A Sbjct: 181 DEANHELVFEFYGNGFMYNQVRIMVGVLVEIGSGTRPVHDVLRLYEVKDRKQARRTVPAA 240 Query: 244 GLYLVAVDYPDRYDLPKPPMGPLFLAD 270 GLYL V Y P P L Sbjct: 241 GLYLKHVYYQGE-----DPQHPTKLPQ 262 >UniRef50_C1SLX8 Pseudouridylate synthase n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SLX8_9BACT Length = 245 Score = 292 bits (749), Expect = 6e-78, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 137/244 (56%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 +Y L +EY G+ + GWQ Q R+VQE+L KALS++ +TV +GRTD+GVH GQ Sbjct: 2 LYNKKLIVEYVGTDFAGWQVQPNGRTVQEELHKALSKMYKTKVTVIGSGRTDSGVHALGQ 61 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V +F T +G+N+ LP DI++ V+ VP+DFHA+ +A ++ Y Y I+ R+R Sbjct: 62 VANFRTERYIPPENVHMGLNSMLPEDISISSVEDVPEDFHAQLNAVSKTYLYRIFPSRVR 121 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 A+L+ + L+ +RM + GE+DFTSF R + +I R Sbjct: 122 SAMLAGRTWWVKDELNYKRMCELLKYFEGEHDFTSFCVQTSLRENNVRRINNIRCYREDK 181 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + ++I N F+H+MVR I G+++E + +I E + +DR+ A TA A GLYL Sbjct: 182 VICIEINGNGFLHNMVRIIAGTVVEALRKGYGDEYIKEAIEGRDRSKAGPTAHAAGLYLK 241 Query: 249 AVDY 252 V Y Sbjct: 242 KVYY 245 >UniRef50_C8NBU9 Pseudouridylate synthase n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NBU9_9GAMM Length = 265 Score = 292 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 128/263 (48%), Positives = 173/263 (65%), Gaps = 3/263 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + A+G+EYDG+ Y GWQRQ ++QE+LE ALSQVA P+ CAGRTDAGVH T Sbjct: 2 TTRYAVGLEYDGTHYAGWQRQPFFAATIQEQLECALSQVAAHPVETTCAGRTDAGVHATA 61 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QV+HF+T A R D AW G N LP DI ++W++ VP +FHAR+SA R YRY+I + Sbjct: 62 QVIHFDTGAARSDFAWLAGANRYLPADIRLQWIRAVPAEFHARYSARERHYRYLIRHRAQ 121 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 A+ ++ + LDA MH AAQ L+GE+DF++FRA +CQ+++PWR + I+V Sbjct: 122 PSALWARRCHWHKKSLDAAAMHSAAQALIGEHDFSAFRAAECQAKSPWRFIRSIDVRERH 181 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 ++ VDI NAF+HHMVRNIVG+L+ VG + +W E+LA++DR A TA A+GLY Sbjct: 182 GWIAVDICGNAFLHHMVRNIVGTLLAVGDGRRDTAWPGEVLASRDRRCAGVTAPAQGLYF 241 Query: 248 VAVDYPDRYDLPKPPMGPLFLAD 270 V YP Y LP P P ++ D Sbjct: 242 HGVAYPREYALPAFP--PAWIPD 262 >UniRef50_B0GAG0 Pseudouridylate synthase n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0GAG0_9FIRM Length = 266 Score = 292 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 81/265 (30%), Positives = 133/265 (50%), Gaps = 20/265 (7%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + +I + + YDG+ Y GWQ Q +++E L + +S++ E I + A RTD+GVH G Sbjct: 1 MRRIRIVVAYDGTNYCGWQIQPNGITIEEILNRQISKLTGEDIRIIGASRTDSGVHALGN 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSA-TARRYRYIIYNHRL 127 V F+T + + +N +P DI + V D+H R+ ++ Y Y IYN ++ Sbjct: 61 VAVFDTESRIPGDRFAYALNQKMPEDIVIVRSDEVQIDWHPRYQNEISKTYEYHIYNAKV 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT--- 184 R + ++ T LD E+M + A+ +LGE+DF SF V+ ++ R V I + Sbjct: 121 RNPLKNRYSTFVSFDLDVEKMRQGAKYILGEHDFASFCNVRTNAKDTVRTVHEITIKEIP 180 Query: 185 ----------------RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELL 228 + +V+ + N F+++MVR I G+L+ VG I ++L Sbjct: 181 MDKFQASNWGQENSNLENEKEIVIRVTGNGFLYNMVRIIAGTLIRVGRGFYEPEKIRDIL 240 Query: 229 AAKDRTLAAATAKAEGLYLVAVDYP 253 AK+ T TA GL LV++DYP Sbjct: 241 EAKEHTSEGITAPPNGLVLVSIDYP 265 >UniRef50_Q8K9U4 tRNA pseudouridine synthase A n=2 Tax=Buchnera aphidicola RepID=TRUA_BUCAP Length = 263 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 121/250 (48%), Positives = 178/250 (71%), Gaps = 1/250 (0%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 K ALG+EYDGS Y+GWQ Q + ++Q ++EKALS++AN + V CAGRTD+GVH GQV Sbjct: 7 KKFALGVEYDGSYYHGWQSQKGLSTIQSEIEKALSKIANHQVNVICAGRTDSGVHSIGQV 66 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 +HF + + R D +W +GVN+ L +I+V+W+K V ++F+AR+SA +R YRYIIYNH+ R Sbjct: 67 IHFTSISFRSDFSWIVGVNSYLSKNISVKWIKEVSENFNARYSAISRSYRYIIYNHKCRS 126 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 A+ H Y+ L+ ++M+ AQ LLGE+DF+SFR+ CQSR+P+R + +N+ R Sbjct: 127 AIFRNRSNHVYKELNVDKMYFEAQSLLGEHDFSSFRSSGCQSRSPFRTITDLNIRRLKNL 186 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 V++DI AN+F++HMVRNIVGSL+++ + + ++I ++L KDR A T A GLYL Sbjct: 187 VIIDITANSFLYHMVRNIVGSLIQINDNTKK-NYIKKILDKKDRNYAGPTVSARGLYLFF 245 Query: 250 VDYPDRYDLP 259 V YP ++LP Sbjct: 246 VKYPMCFNLP 255 >UniRef50_A9WH95 tRNA pseudouridine synthase A n=5 Tax=Chloroflexaceae RepID=TRUA_CHLAA Length = 278 Score = 290 bits (744), Expect = 2e-77, Method: Composition-based stats. Identities = 99/250 (39%), Positives = 131/250 (52%), Gaps = 4/250 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + IAL + YDG+ + G Q Q ++R+VQ LE A + E + AGRTDAGVH TGQ Sbjct: 1 MRTIALLLAYDGTDFAGSQWQTDIRTVQGALESAWEALTQERRRIVLAGRTDAGVHATGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V H +TT G+NA+LP D+A++ V DFHARFSA R YRY+I Sbjct: 61 VAHVQTTTRHNLQTIWRGLNAHLPVDLAIQNVGEAVPDFHARFSAIQREYRYLIDCAAAP 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR--- 185 L V H+ LD M A + L G +DF +F R+ R + V Sbjct: 121 LPQLRHQVLHYAGTLDVAAMTAALKLLEGTHDFAAFTTATPAQRSTVRTMYWTRVGDYEW 180 Query: 186 -HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 + +++ ANAF+ HMVR IVG+L+ VG E+LA++DR LA TA A G Sbjct: 181 FERRLLAIEVAANAFLQHMVRMIVGTLLLVGRGRMTVDQFGEVLASRDRRLAGPTAPAHG 240 Query: 245 LYLVAVDYPD 254 L L AV YP Sbjct: 241 LTLTAVRYPP 250 >UniRef50_Q6MEE7 tRNA pseudouridine synthase A 1 n=2 Tax=Parachlamydiaceae RepID=TRUA1_PARUW Length = 256 Score = 290 bits (744), Expect = 2e-77, Method: Composition-based stats. Identities = 80/252 (31%), Positives = 136/252 (53%), Gaps = 4/252 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN-EPITVFCAGRTDAGVHGTG 67 ++ L I YDG+ Y GWQ Q S+Q+K+++AL + E + + +GRTDAGVH G Sbjct: 1 MHCYKLTIAYDGTNYSGWQIQPNASSIQQKIQEALCILLKKEKVVLVGSGRTDAGVHAKG 60 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QV HF + + +N LP DI ++ V+ V FH+++SA + Y Y ++ +++ Sbjct: 61 QVAHFHFQDYIDLSRLHVSLNGLLPRDIRIKAVEPVSPRFHSQYSAIRKEYHYYLHLNKV 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRA---VQCQSRTPWRNVMHINVT 184 HF +D + +AA G +DFTSF ++ P R + +++ Sbjct: 121 MDPFQRLYSWHFQRKIDVNILKKAAILFTGTHDFTSFANEAHRGTAAKNPVRTLYRLDIK 180 Query: 185 RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 + + ++ + + F++ MVRNIVG+LM+V +H + I ++ AAK+R A+ A EG Sbjct: 181 PNEGGLRLEFEGDGFLYKMVRNIVGTLMDVASHKRAIEEINQIFAAKNRRQASLAAPPEG 240 Query: 245 LYLVAVDYPDRY 256 L+L+ V Y + Sbjct: 241 LFLIQVFYENEN 252 >UniRef50_A5I338 Pseudouridylate synthase n=17 Tax=Firmicutes RepID=A5I338_CLOBH Length = 246 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 128/246 (52%), Gaps = 1/246 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQN-EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + I L I+YDGSKY GWQ+Q ++Q K+E LS + E I + +GRTD GVH Sbjct: 1 MTNIKLYIQYDGSKYNGWQKQKENDNTIQGKIENVLSLMTGEDINLIASGRTDTGVHANM 60 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QV +F TT LP DI V V + FH+R + ++Y Y I N + Sbjct: 61 QVANFHTTFQGSTDEILSYCYEYLPKDIVVYDAFHVDERFHSRLNVKKKKYTYKICNKKF 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 K H E LD E M A L+G +DF SF A + + ++ R + I++ + Sbjct: 121 HDVFSRKYSYHVPETLDIEAMKEACTYLVGRHDFASFTAARSKKKSTVRTLYSIDIIKKD 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 YV + + F+H M+R + G+L+E+G HN + +L A+DR A TA ++GL++ Sbjct: 181 SYVDIVYLGSGFLHKMIRILTGTLIEIGLHNLKSVDVKIILDAEDRRKAGPTAPSQGLFM 240 Query: 248 VAVDYP 253 +VDY Sbjct: 241 TSVDYE 246 >UniRef50_A8SWG9 Pseudouridylate synthase n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SWG9_9FIRM Length = 271 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 75/271 (27%), Positives = 119/271 (43%), Gaps = 26/271 (9%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQV---------------------- 46 + YDG++Y+GW+ + +V+ ++E LS++ Sbjct: 1 MTNYRFTFSYDGTRYHGWESKTNADTVEGRIEAVLSKMVDGDNGKTADVCRENMSADIRD 60 Query: 47 --ANEPITVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVP 104 + + AGRTDAGVH V R +N LP DI V Sbjct: 61 TKTPAKVDIHGAGRTDAGVHARAMVASGRLNTNRTPDEIKDYLNRYLPADICALDVTVAG 120 Query: 105 DDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEP--LDAERMHRAAQCLLGENDFT 162 D FHAR +AT + Y Y +Y +P V + LD + M +AA L+G++DF Sbjct: 121 DRFHARLNATGKIYEYTLYVGLEKPVFDRNYVWCVPQGSVLDVDAMKKAASYLVGKHDFR 180 Query: 163 SFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPES 222 SF ++ R + + + + G YV + N F+ +MVR + G+L+E+G + Sbjct: 181 SFCGNNKMKKSTVRTIYDVEIVKEGDYVRMRFHGNGFLQNMVRILTGTLVEIGYGHMDAE 240 Query: 223 WIAELLAAKDRTLAAATAKAEGLYLVAVDYP 253 + E++ DR LA TA GL L+ V+Y Sbjct: 241 HMPEIIVGMDRQLAGPTAPPHGLCLLKVEYD 271 >UniRef50_C5NXQ0 Pseudouridylate synthase n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXQ0_9BACL Length = 265 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 132/248 (53%), Gaps = 3/248 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++ L YDGS Y+G+Q Q ++QE++EK+L ++ + + ++ +GRTD+GVH GQV+ Sbjct: 2 RVVLLCRYDGSNYHGFQIQPNNNTIQEEIEKSLKKINKKDVRLYMSGRTDSGVHAYGQVL 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+T D AW +NA +P DI + + +DFH R+++T + Y Y ++ R Sbjct: 62 HFDTDLNIPDEAWVKALNATIPKDIRIVGATSASEDFHVRYNSTQKTYYYKLHIGREVDP 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH---G 187 L V + E+ A Q +GE+DF+SF + R + + + + Sbjct: 122 FLLNYVGKHSFDFNFEKAQEALQYFIGEHDFSSFCSKNSSVEDKVRTIYSLTMEKDLINP 181 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 V +I N F+++MVR I+G++ V A +++ E+L K+R A A A GLYL Sbjct: 182 NIVNFEITGNGFLYNMVRIIIGTIQNVAAGKYEANYVKEILEKKERQFAGPKADAAGLYL 241 Query: 248 VAVDYPDR 255 V Y D Sbjct: 242 KEVLYDDD 249 >UniRef50_C9LN87 Pseudouridylate synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LN87_9FIRM Length = 265 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 82/244 (33%), Positives = 122/244 (50%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I + + Y+G+ Y G+QRQ +VQE LE AL ++ T++ A RTDAGVH GQ Sbjct: 1 MRNIRITLAYEGTAYSGFQRQENSITVQEILETALQKLTGTKTTLYFAARTDAGVHAYGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 F T + + +N LP DI V + VP DF R + + Y Y++ + Sbjct: 61 ECTFYTESSIPGDRFIFALNILLPPDIRVTESREVPYDFSVRRNNYGKTYGYLLTEEKDC 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 P + LD +M +AA+ L G +DFTSFR +P R + I + + Sbjct: 121 PPFFKRYTWQTGRKLDISKMEKAAEVLSGTHDFTSFRGNNSVPASPVRTIHDIRIIKKHH 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + + + F++HMVRNI G+L + G + E+L AKDR ATA A GL L+ Sbjct: 181 FFHIFVTGEGFLYHMVRNIAGALADAGTGKLTPKDLREILEAKDRKFLGATAPAHGLCLL 240 Query: 249 AVDY 252 V + Sbjct: 241 KVYF 244 >UniRef50_A9KR47 Pseudouridylate synthase n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KR47_CLOPH Length = 264 Score = 289 bits (741), Expect = 6e-77, Method: Composition-based stats. Identities = 83/260 (31%), Positives = 123/260 (47%), Gaps = 9/260 (3%) Query: 5 QQPPVYKIALGIEYDGSKYYGWQRQN----EVRSVQEKLEKALSQVANEPITVFCAGRTD 60 + I L I YDG+ Y GWQR S+Q LE+ LS+V EPI + +GRTD Sbjct: 4 EMDRKRNIKLIISYDGTNYSGWQRIPKAANGDHSIQGLLEEFLSKVLLEPIKLIGSGRTD 63 Query: 61 AGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRY 120 GVH GQV +F + + +N LP DI + V +FH+RF A + Y+Y Sbjct: 64 TGVHALGQVANFYSRSNLDVNIIRQKMNQVLPEDIKILQANEVDLNFHSRFDAVEKIYQY 123 Query: 121 IIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMH 180 II K + LD E M +AA+ L+G D+ SF + ++ R + Sbjct: 124 IIDTKERESVFFRKYSYSCGKDLDIEAMRQAAKLLIGTMDYKSFCTDRKDGKSTIRTISE 183 Query: 181 INVT-----RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTL 235 I + R+ ++ + N F+HHM+R I G+L+EVG + + + + K R Sbjct: 184 ITIEELRQNRNQQGIIFTFRGNGFLHHMIRIISGTLLEVGTQERSVESVRQAILGKKREY 243 Query: 236 AAATAKAEGLYLVAVDYPDR 255 A T +GL+L V Y Sbjct: 244 AGITLYPQGLFLKQVIYDKN 263 >UniRef50_B9DM46 tRNA pseudouridine synthase A n=6 Tax=Staphylococcaceae RepID=TRUA_STACT Length = 267 Score = 289 bits (740), Expect = 7e-77, Method: Composition-based stats. Identities = 82/241 (34%), Positives = 125/241 (51%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +I + I Y GS + G+Q Q R+VQ++ EK L ++ + + + RTD GVH Q Sbjct: 2 RILVKISYQGSNFLGFQIQQHGRTVQQQFEKILKRMHKRHVRIHPSSRTDRGVHAIEQYF 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+T W +N+ LP DI V V V DDFH R+ +RYRY +Y + R Sbjct: 62 HFDTELNIAPDKWQYAMNSALPDDIYVNEVSIVDDDFHCRYDCVGKRYRYKVYQGKHRDV 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 +S T + + LD E+M+ AAQ +G +DFT F + + + + R + + + Sbjct: 122 FMSGLKTFYADSLDLEKMNEAAQQFIGTHDFTGFCSQKTEVESKERTLYQSEIIKTENGF 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + + F+++MVR +V L+EVG + + LL AKDR TA AEGLYL + Sbjct: 182 DYIVTGSGFLYNMVRVLVAFLIEVGKGKRQPEEVPILLEAKDRKQVPFTAPAEGLYLEKI 241 Query: 251 D 251 Sbjct: 242 Y 242 >UniRef50_UPI0000E87E98 tRNA pseudouridine synthase A n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87E98 Length = 264 Score = 289 bits (740), Expect = 8e-77, Method: Composition-based stats. Identities = 93/250 (37%), Positives = 147/250 (58%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +IA + Y+G + GWQ+Q +V+++Q +E AL+++A + + +GRTD+GVH GQ++ Sbjct: 2 RIACSVSYNGYGFSGWQKQPDVKTIQGLIESALTEIAKDTVITHASGRTDSGVHALGQII 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+TT R AW GVNA LP I VRW K + + FHAR S R Y+Y++ A Sbjct: 62 HFDTTKNRPLTAWVKGVNAFLPSSIKVRWAKNISESFHARHSVLEREYQYLLIKDTNNSA 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + Y LD + A +C G +DF+SFR+ +CQ+++P R + + G Sbjct: 122 IFHATAGWTYFDLDDYNLMAACKCFEGTHDFSSFRSSECQAKSPVRTINQFRCEQFGNTY 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + I+AN F+HH +RN++ +++ V + +I +LL+ KDRTLA T GLYL + Sbjct: 182 LFTIRANGFLHHQIRNMIAAVIHVAKNEDSVGFIDDLLSKKDRTLAPPTFMPNGLYLSNI 241 Query: 251 DYPDRYDLPK 260 Y D++ LP+ Sbjct: 242 KYDDKWKLPQ 251 >UniRef50_C1XI54 Pseudouridylate synthase n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XI54_MEIRU Length = 263 Score = 288 bits (739), Expect = 9e-77, Method: Composition-based stats. Identities = 87/250 (34%), Positives = 125/250 (50%), Gaps = 7/250 (2%) Query: 8 PVYKIALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGT 66 + +I L +EYDGS + G Q Q R+VQ++LE ALSQ+ ++ GRTDAGVH Sbjct: 11 NLRRILLTLEYDGSGFAGLQTQAQGERTVQQELEAALSQIPGARPKIWPCGRTDAGVHAL 70 Query: 67 GQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 VH++T +N LP DI + VP DFHAR S R YRY I R Sbjct: 71 AMPVHYDTLDNIPTEKIPHALNTLLPPDIRALAAQEVPADFHARKSCHWREYRYRILQRR 130 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT-- 184 + PA+ V L+ M A +CL+G +DF +F + R R + ++ Sbjct: 131 MPPALDRHRVWWIPHSLNLIPMRHALECLVGTHDFKAFAVK--EERATVREIYRAHLEVW 188 Query: 185 --RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 G + ++ + F+ VR++VG+L+E+G + S I LLA+ R A TA A Sbjct: 189 PTEGGREIWIEFVGSGFLRGQVRSMVGTLVEIGLGKRDSSSIQSLLASGSRKDAGPTAPA 248 Query: 243 EGLYLVAVDY 252 +GLY V Y Sbjct: 249 QGLYFVRAGY 258 >UniRef50_C2DZZ6 Pseudouridylate synthase n=9 Tax=Lactobacillus RepID=C2DZZ6_9LACO Length = 262 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 85/250 (34%), Positives = 135/250 (54%), Gaps = 4/250 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVA-NEPITVFCAGRTDAGVHGTG 67 + + + + YDG ++G+Q+Q R+VQ +E+AL ++A + I V +GRTDAGVH G Sbjct: 1 MPRFKMTMAYDGHLFHGFQKQPNQRTVQGTIEEALKKMAKGQRIVVHGSGRTDAGVHALG 60 Query: 68 QVVHFETT-ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 QV+HF+ L +N+ +P DI + + V +DFH ++S + YRYI+ R Sbjct: 61 QVIHFDFPNDNIPANRMVLALNSMMPTDIIFKDAEIVNEDFHVQYSTHGKWYRYIVNQDR 120 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR- 185 H+ L+ +M AA LLGE+DFTSF A Q R + ++ + + Sbjct: 121 FVDPFKRFYTGHYPYKLNVSKMQEAALDLLGEHDFTSFAASGGQIIDKVRTIYYVKIWQK 180 Query: 186 -HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 ++ D N F+++MVR +VG+L+E+G +P + ++ AKDR TA A G Sbjct: 181 SEENEIIFDFIGNGFLYNMVRIMVGALLEIGNERRPVHDLKRVILAKDRQEVRNTAPASG 240 Query: 245 LYLVAVDYPD 254 LYL V Y + Sbjct: 241 LYLYHVFYEE 250 >UniRef50_A8SNL4 Pseudouridylate synthase n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SNL4_9FIRM Length = 247 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 76/246 (30%), Positives = 128/246 (52%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I L I YDGS ++G+Q+Q V +VQ ++E AL ++ E I + AGRTD GVH Sbjct: 1 MRNIMLTISYDGSLFFGFQKQKNVVTVQGEIEDALKKITEENINIISAGRTDRGVHSLRH 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 +++F T + + +N LP + V K V ++FH+RF A + Y+YI+ + Sbjct: 61 IINFHTESNVGVLNFKTALNHFLPIGVRVLDSKEVSENFHSRFDAKMKTYKYILNLDEVM 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + +F PLD E+M RA + +G F +F + + P R + + + Sbjct: 121 DPIYYNYKANFPYPLDIEKMKRAKEYFIGRKSFKAFMGPRTGNINPIREINSFEIYKENN 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 ++ IK +F+ + VR +VG+L+++G E + +L ++DRT A T GLYL+ Sbjct: 181 DLIFLIKGQSFIRNQVRIMVGTLVDIGRGLIEEDELERILDSEDRTRAGVTLSPNGLYLM 240 Query: 249 AVDYPD 254 + Y Sbjct: 241 EILYDK 246 >UniRef50_B2IEW0 tRNA pseudouridine synthase A n=2 Tax=Alphaproteobacteria RepID=TRUA_BEII9 Length = 260 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 96/250 (38%), Positives = 134/250 (53%), Gaps = 1/250 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + L +EYDG+ + GWQRQ SVQE +E AL + P+ + AGRTDAGVH + Q Sbjct: 1 MPRYKLTVEYDGASFVGWQRQKNGLSVQEVIETALLAINGAPVGIRGAGRTDAGVHASAQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANL-PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 V H + + +NA++ P +AV + VP+ F ARFSA R Y Y I N R Sbjct: 61 VAHADLAREWRPDVLRDALNAHMRPALVAVVAAEPVPETFDARFSAIRRHYLYRIINRRA 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + LDA MH AAQ L G +DF++FRA +CQ+ +P R + ++V G Sbjct: 121 PLTFEAGRAWLVKRRLDARAMHEAAQVLTGRHDFSTFRAAECQAASPIRTLERLDVQAVG 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + + A +F+HH VR++VGSL VG+ + L A DR A A GLYL Sbjct: 181 DLIEIRASARSFLHHQVRSMVGSLEMVGSGKWSAGDLRAALEACDRRRCGMVAPAAGLYL 240 Query: 248 VAVDYPDRYD 257 VDYP+ + Sbjct: 241 TGVDYPEEGE 250 >UniRef50_C2KUD3 Pseudouridylate synthase n=1 Tax=Oribacterium sinus F0268 RepID=C2KUD3_9FIRM Length = 265 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 80/259 (30%), Positives = 135/259 (52%), Gaps = 5/259 (1%) Query: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPIT-VFCAGRT 59 M+ +++ +I L + Y+G+ Y+G+Q+Q + ++ +E+ L + + A RT Sbjct: 1 MNKRKEEMEQRIVLKLAYEGTSYHGFQKQEGLSTIAGTVEEQLRNLFPWKMENFIGASRT 60 Query: 60 DAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYR 119 D GVH G ++ F+T +N+ LP DI V +V DFH RF+ + YR Sbjct: 61 DQGVHALGNLLSFDTEGKVSGEQILRALNSYLPEDIRVMEAYSVQQDFHPRFTPHRKAYR 120 Query: 120 YIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQS----RTPW 175 Y I ++ + + H+ PLD ++ + L GE+DF SF + QS + Sbjct: 121 YSICRSKVENPLRRRTAYHYTFPLDCGKISEGMELLKGEHDFRSFANPKAQSLLQGGSSV 180 Query: 176 RNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTL 235 R + ++ G Y+ ++ N F++HM+R + G+L+E+G S + E+L KDRTL Sbjct: 181 REIYRFSMEEEGDYLHFSVEGNGFLYHMIRILAGTLLELGRGRISLSQLEEILEKKDRTL 240 Query: 236 AAATAKAEGLYLVAVDYPD 254 A TA A+GL L+ +DY D Sbjct: 241 AGPTAPAKGLCLMNLDYGD 259 >UniRef50_Q253C0 tRNA pseudouridine synthase A n=12 Tax=Chlamydiaceae RepID=TRUA_CHLFF Length = 268 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 88/257 (34%), Positives = 130/257 (50%), Gaps = 3/257 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + ++ L + Y G+ Y GWQRQ S+QE +E AL++V +PI V +GRTD+GVH GQ Sbjct: 1 MKRVVLLLAYQGTAYAGWQRQPNDLSIQEVIESALARVLGKPIVVSSSGRTDSGVHAYGQ 60 Query: 69 VVHF---ETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 V HF + + + +NA LP DI +R V +FHARFSA A+ YRY + Sbjct: 61 VAHFSQPDHPLFSQPQSIKKMLNAILPKDIVIRDVVLSDVNFHARFSAIAKEYRYSLTRS 120 Query: 126 RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR 185 + + + M + A+ LLG +DF SF + R + +++ Sbjct: 121 PKPLPWQRYFAYYPRHSIKIDLMQKGAKYLLGTHDFASFANHGRDYTSTERTLFKLDIID 180 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 + V + K N F++ MVRNIVGSL+++ P +I E+LA K R A + L Sbjct: 181 NEEIVTIICKGNGFLYKMVRNIVGSLLDISKEKYPPEYIQEILAQKSRRKGPPAAPSHAL 240 Query: 246 YLVAVDYPDRYDLPKPP 262 L V YP Y+ P Sbjct: 241 SLHHVCYPKPYNWFCTP 257 >UniRef50_A8R9F5 Pseudouridylate synthase n=2 Tax=unclassified Erysipelotrichaceae RepID=A8R9F5_9FIRM Length = 252 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 88/248 (35%), Positives = 133/248 (53%), Gaps = 2/248 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + + + YDG+ Y GWQ+Q+ RS+QE++E AL+++ E + + +GRTDA VH Q Sbjct: 1 MDRYKVTVCYDGTNYAGWQKQDNARSIQEEIECALAKINEEAVEIVASGRTDAHVHALAQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V HF+ D W N+ LP DI + V+ V D FHARF A +RY Y I N L Sbjct: 61 VFHFDAKKALSDEQWVRACNSLLPKDIRILKVEKVSDSFHARFDAVRKRYDYYITNDVL- 119 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQ-CQSRTPWRNVMHINVTRHG 187 L + + LD M A +G +DFTSF + + + ++ + + + V + Sbjct: 120 NPFLENYMGKDRKSLDVAYMQECANVFIGTHDFTSFTSSKIDERKSRIKTIYRLEVQQEA 179 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 V + + NAF+ +MVR + L+E G H + I+++L AKD+ A A GLYL Sbjct: 180 NAVHIIFEGNAFLRYMVRMLAQVLIEAGKHRLTKEAISQMLEAKDKHACRYKASANGLYL 239 Query: 248 VAVDYPDR 255 V VDY D Sbjct: 240 VRVDYQDN 247 >UniRef50_A9KLD6 Pseudouridylate synthase n=2 Tax=Clostridium RepID=A9KLD6_CLOPH Length = 248 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 86/247 (34%), Positives = 131/247 (53%), Gaps = 3/247 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNE---VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHG 65 + I L IEYDGS+Y GWQ+Q ++Q+KLE L+++ NE +TV A RT+AGVH Sbjct: 1 MRNIQLIIEYDGSRYDGWQKQAGNQKSITIQDKLEDVLNKMENETVTVIGAARTEAGVHA 60 Query: 66 TGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 QV F T + K +N LP DIAV VP+ FHA F+A + Y Y I Sbjct: 61 YKQVASFMTNSKLKVYEIKQYLNRFLPRDIAVLEALEVPERFHASFNAGSFEYEYKISIG 120 Query: 126 RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR 185 + K + ++ D +M AA+ L+G++DF +F + ++ R + + + Sbjct: 121 EVPSVFERKYNYYCFKRPDIAKMKEAAKYLVGKHDFKAFSDNKRMKKSTEREIYSLEIYG 180 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 +V+ + + F HMVR +VG+L++VG I +L +KDR A T +A+GL Sbjct: 181 DEKEIVITVHGDDFWPHMVRIMVGTLLDVGLSKIEPMDIKRILESKDRDKAGETIEAKGL 240 Query: 246 YLVAVDY 252 +L V Y Sbjct: 241 FLTEVHY 247 >UniRef50_Q7MBB9 tRNA pseudouridine synthase A n=1 Tax=Gloeobacter violaceus RepID=TRUA_GLOVI Length = 304 Score = 287 bits (735), Expect = 3e-76, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 134/246 (54%), Gaps = 1/246 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++AL ++Y G ++GWQ Q R+VQ+ LE+A ++A P+ AGRTD GVH +GQVV Sbjct: 16 RLALRVQYLGGHFFGWQWQPGQRTVQQCLEEATERIARHPVRYHAAGRTDTGVHASGQVV 75 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+T W G+N+ LP DIAVR V D +HARF+A R YRY I+N + Sbjct: 76 HFDTHKKLAPETWVRGLNSLLPDDIAVRAAAYVSDHWHARFTALWREYRYCIHNSTVPDL 135 Query: 131 VLSKGVTHFYE-PLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 + ++ PLD+E + A L G +DF +FR +V TR G Sbjct: 136 FVRAQSWYYPYCPLDSEAVAAALATLPGHHDFRAFRRAGSSRPHSLVHVYTAECTREGEQ 195 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 + + ++AN+F++ M+R ++G+L EVG+ A L A +R A +GL LV Sbjct: 196 IAIRVRANSFLYGMMRLLIGALAEVGSGRWSVERFAGLWQAGNREQVKYAAPPQGLCLVG 255 Query: 250 VDYPDR 255 V YPD Sbjct: 256 VGYPDD 261 >UniRef50_B5CS63 Pseudouridylate synthase n=6 Tax=Clostridiales RepID=B5CS63_9FIRM Length = 264 Score = 287 bits (734), Expect = 4e-76, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 120/248 (48%), Gaps = 2/248 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVR-SVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + L I YDG+ Y GWQRQ ++Q LE +S+ A + V +GRTDAGVH G Sbjct: 13 MRTYRLVIAYDGTAYQGWQRQANTEMTIQGILESCISKAAGYAVEVNGSGRTDAGVHARG 72 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 Q +D +T VN LP DI +R + FHAR SA +RY Y I Sbjct: 73 QTASVVLHGKAEDGFFTEKVNKLLPPDIRIREAGLEKNGFHARKSAVGKRYVYQIDTDEK 132 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + HF + LD M +AA+ L G ++F ++ + + R + I V G Sbjct: 133 PDVFDRRYTYHFPKKLDIAAMQQAAELLTGTHEFAAYT-DKKDETSTKRTIYAIMVGGQG 191 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + + + F++HMVR + G+L+EVG + + L AKDRT A A GL+L Sbjct: 192 GRINIQYEGTGFLYHMVRILTGTLLEVGMGTRRIESVTIALEAKDRTKVGFLAPARGLFL 251 Query: 248 VAVDYPDR 255 V Y ++ Sbjct: 252 DEVYYKEK 259 >UniRef50_Q5FPX3 tRNA pseudouridine synthase A n=1 Tax=Gluconobacter oxydans RepID=TRUA_GLUOX Length = 275 Score = 286 bits (733), Expect = 4e-76, Method: Composition-based stats. Identities = 111/249 (44%), Positives = 148/249 (59%), Gaps = 4/249 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVA-NEPITVFCAGRTDAGVHGTGQV 69 + AL IEYDG+ Y GWQ+QN+ S+Q +E A S++ N P+ AGRTDAGVH G V Sbjct: 22 RWALRIEYDGTGYLGWQKQNDGTSIQGLIEAAASKLVRNRPVPSITAGRTDAGVHAAGMV 81 Query: 70 VHFETTA--LRKDAAWTLGVNANL-PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 +H + G+ +L P + V V +++ARFSAT R YRY I N Sbjct: 82 IHLDFPDDAPIDARQIRDGMGYHLKPHRVVVLETAKVGPEWNARFSATWRSYRYTILNRP 141 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 RP ++ V H PLD + M +AA LLG +DFTSFRAV CQ+R+P R + +N+ R Sbjct: 142 ARPGLMENRVWHIKRPLDVDLMQQAANHLLGPHDFTSFRAVACQARSPIRTLDVLNIHRD 201 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G V++D KA +F+HH VRN+ G+LM +G+ P I E+L AKDR A TA EGL Sbjct: 202 GELVMIDTKARSFLHHQVRNMAGTLMMIGSRQWPVEKIIEILEAKDRCAAGQTAPPEGLC 261 Query: 247 LVAVDYPDR 255 L+ V YPD Sbjct: 262 LMDVGYPDD 270 >UniRef50_B9KIN8 tRNA pseudouridine synthase A n=5 Tax=Anaplasmataceae RepID=TRUA_ANAMF Length = 247 Score = 286 bits (733), Expect = 4e-76, Method: Composition-based stats. Identities = 99/246 (40%), Positives = 141/246 (57%), Gaps = 4/246 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNE--VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + +EYDG+ + GWQRQ RSVQE +E A+ +++ + +TVF AGRTDAGVH GQ Sbjct: 2 RYRAVVEYDGTAFIGWQRQKGVAGRSVQESIEDAIYRLSQQHVTVFAAGRTDAGVHALGQ 61 Query: 69 VVHFETTALRKDAAWTLGVNANLPGD-IAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 VVHF+ +D +N L D +++ ++ + FHARFSA R Y Y I N Sbjct: 62 VVHFDLNTSLQDYVIKNALNHYLRSDMVSILSLEEAAEGFHARFSAKKRHYMYKIVNRDA 121 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGEN-DFTSFRAVQCQSRTPWRNVMHINVTRH 186 P + + H + L+ M AA ++GE DF SFRA +CQS++ R V I+ R Sbjct: 122 PPCLDRLRMWHVPKQLNVSDMQEAASHMVGEKKDFASFRAKECQSKSSVRTVDRIDCVRE 181 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G + V + A +F+H VR IVG+L++ G P S++ E+L K+R A TA GLY Sbjct: 182 GNNIFVHVSAKSFLHKQVRIIVGTLVQCGHGAFPPSYVLEILERKNRAAAGITAPPHGLY 241 Query: 247 LVAVDY 252 LV V+Y Sbjct: 242 LVLVEY 247 >UniRef50_A7C1F2 Pseudouridylate synthase n=1 Tax=Beggiatoa sp. PS RepID=A7C1F2_9GAMM Length = 272 Score = 286 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 121/250 (48%), Positives = 162/250 (64%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +IALG+EY+G+ ++GWQ Q RSVQ ++E ALS+VAN P+ V CAGRTD GVH GQV+ Sbjct: 2 RIALGVEYNGANFFGWQFQPHARSVQGEVEIALSKVANHPVKVICAGRTDTGVHAIGQVI 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 H + T R +W LG N+NLP D+++ W ++V ++FHARFSA AR YRYII N RPA Sbjct: 62 HADVTVQRSTRSWVLGTNSNLPIDVSMLWAQSVDNNFHARFSAQARHYRYIILNRPTRPA 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 +L+K VT L+ ERM A L+G +DF + +TP R + + V+R V Sbjct: 122 LLTKQVTWERRILEVERMQIAGNYLIGTHDFHLIVPFPVKQKTPIRTISRLMVSRMDDRV 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 ++DI ANAF+HHMVRNI G L+ +GA + W +L A+DRT+ TA A GLY + Sbjct: 182 IIDISANAFLHHMVRNIAGVLITIGAGEKRPKWADTVLEAQDRTMGGITAPAAGLYFCGI 241 Query: 251 DYPDRYDLPK 260 DYP Y PK Sbjct: 242 DYPASYQFPK 251 >UniRef50_A8GUM4 tRNA pseudouridine synthase A n=19 Tax=Alphaproteobacteria RepID=TRUA_RICB8 Length = 245 Score = 285 bits (731), Expect = 7e-76, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 140/245 (57%), Gaps = 1/245 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 +Y+ + +EY G+ GWQRQ+ V SVQ+ LE+A+ + + E +T+F +GRTDAGVH GQ Sbjct: 1 MYRYKISVEYLGTNLAGWQRQSGVMSVQQILEEAIYKFSGEQVTLFGSGRTDAGVHAIGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIA-VRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 + HF+ + + +N I V + V ++FHARFSA AR Y Y I N Sbjct: 61 IAHFDLSKYFEPYKIIRAINYFTRPYIVGVCNCELVDNNFHARFSAIARHYVYRILNRPY 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + V PLD M +++ LLG+++FTSFRA CQS++P + + +++ + Sbjct: 121 PSVIDFDRVWWISVPLDVSAMQKSSLYLLGKHNFTSFRASSCQSKSPIKTLTKLDIIKEN 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + + A +F+HHMVRNIVGSL+ VG + + ++L DR A TA A GLY Sbjct: 181 EEIKLYFSAPSFLHHMVRNIVGSLVLVGKNIWQAEQMQQVLEVADRKAAGPTAPACGLYF 240 Query: 248 VAVDY 252 + DY Sbjct: 241 IKADY 245 >UniRef50_Q73KE3 tRNA pseudouridine synthase A n=1 Tax=Treponema denticola RepID=TRUA_TREDE Length = 268 Score = 285 bits (731), Expect = 8e-76, Method: Composition-based stats. Identities = 90/260 (34%), Positives = 133/260 (51%), Gaps = 8/260 (3%) Query: 10 YKIALGIEYDGSKYYGWQRQNEV-----RSVQEKLEKALSQVANEPITVFCAGRTDAGVH 64 I L I YDG+ + GWQ+Q + R+VQ +LEKAL+++ PI +GRTD+GVH Sbjct: 8 KNILLTISYDGTNFCGWQKQTKEGAETFRTVQGELEKALTKIHKHPIETNGSGRTDSGVH 67 Query: 65 GTGQVVHFETT-ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIY 123 Q V+F + + + +N+ LP DI V V HARF+A +R YRY I Sbjct: 68 AARQAVNFFCDIKSMRASNFLPALNSILPKDIRVMDAAEVSPLLHARFNALSRTYRYKIK 127 Query: 124 NHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV 183 + A H D ++ A CL GE D T+F A QS + R + Sbjct: 128 CGKTIFAHEQPYTWHIRRYPDIAALNEMASCLSGELDCTAFSAAGDQSISKSRYIKKAVF 187 Query: 184 TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 Y++ +I ANAF+ MVR+IVG+L+ + + ++L +K R A TA + Sbjct: 188 FIENDYLIFEICANAFLWKMVRSIVGTLLHLDEIGASKKDFKDILESKMREKAGPTAPPQ 247 Query: 244 GLYLVAVDYPDRYDLPKPPM 263 GL+L +++YP+ DL K P Sbjct: 248 GLFLWSIEYPE--DLLKAPP 265 >UniRef50_Q89ZY4 tRNA pseudouridine synthase A n=12 Tax=Bacteroidetes RepID=TRUA_BACTN Length = 269 Score = 285 bits (731), Expect = 8e-76, Method: Composition-based stats. Identities = 90/251 (35%), Positives = 128/251 (50%), Gaps = 5/251 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + + + YDG+ Y+GWQ Q SVQE L KALS + V AGRTDAGVH + Sbjct: 1 MQRYFIYLAYDGTNYHGWQIQPNGSSVQECLMKALSTFLRRDVEVIGAGRTDAGVHASLM 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V HF+ + +N LP DI+V V+ V D HARF ATAR Y+Y + + Sbjct: 61 VAHFDHEDVLDTVTVADKLNRLLPPDISVYRVRQVKPDAHARFDATARTYKYYVTTAKY- 119 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + Y LD ERM+ AA+ L DFTSF + +T ++ H T+ Sbjct: 120 -PFNRQYRYRVYGSLDYERMNEAARTLFEYIDFTSFSKLHTDVKTNICHISHAEWTKMEG 178 Query: 189 Y---VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 V I+A+ F+ +MVR IVG+L+EVG +++ +DR A +A L Sbjct: 179 EDTTWVFTIRADRFLRNMVRAIVGTLLEVGRGKLTVEGFRKVIEQQDRCKAGTSAPGNAL 238 Query: 246 YLVAVDYPDRY 256 +LV V+YP+ Sbjct: 239 FLVNVEYPEDI 249 >UniRef50_Q2JUJ7 Pseudouridylate synthase n=2 Tax=Synechococcus RepID=Q2JUJ7_SYNJA Length = 287 Score = 285 bits (730), Expect = 9e-76, Method: Composition-based stats. Identities = 94/262 (35%), Positives = 128/262 (48%), Gaps = 3/262 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 +IAL I+Y GS + GWQRQ R+VQ LE+A++ A P+ ++ AGRTD GVH +GQ Sbjct: 3 SRRIALKIQYLGSGFRGWQRQAGHRTVQGVLEEAIALRAGHPVALYGAGRTDTGVHASGQ 62 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V HF+TT+ W +N LP D+ V VPD +HARFSA RRYRY+I N L Sbjct: 63 VAHFDTTSGIPPTEWARVLNDCLPEDVVVLASAQVPDFWHARFSARWRRYRYLILNRELP 122 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 PL E M A LLGE+ +FR V + R G Sbjct: 123 DVFWRLFSWQVRWPLQVEPMAEALNSLLGEHSLEAFRRRGSDRPHSRVQVQEVLCQRLGD 182 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKD--RTLAAATAKAEGLY 246 + ++++A+ F++ M+R +VGSL VG L D R +A +GL Sbjct: 183 LISIEVQASGFLYRMMRLLVGSLEVVGRGEISPQQFVHLWQHNDWSRMRTRYSAPPQGLC 242 Query: 247 LVAVDY-PDRYDLPKPPMGPLF 267 LV V Y D + P + Sbjct: 243 LVDVGYAGDPFGRRFAHSPPFW 264 >UniRef50_Q031N1 tRNA pseudouridine synthase A n=66 Tax=Streptococcaceae RepID=TRUA_LACLS Length = 253 Score = 285 bits (729), Expect = 1e-75, Method: Composition-based stats. Identities = 86/253 (33%), Positives = 133/253 (52%), Gaps = 3/253 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQ-VANEPITVFCAGRTDAGVHGTG 67 + + I YDG+ + G+Q Q R+VQE++EK LS+ + EP+ + +GRTD+GVH G Sbjct: 1 MTRYKATIAYDGTDFAGFQSQTNQRTVQEEIEKVLSKLNSFEPVILQGSGRTDSGVHAFG 60 Query: 68 QVVHFETT-ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 QV+HF+ R G++ P DIAV+ V+ VPDD+HAR+ + Y Y + N Sbjct: 61 QVIHFDLNGKARDLERLRFGLDTQTPADIAVKKVELVPDDWHARYQKHEKTYEYYLENSV 120 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR- 185 R +F PL+ E M A L+G++DFT F A R + + + Sbjct: 121 TRSPFHRHSKAYFRYPLNFELMQGAMAKLVGQHDFTGFTASGSSVDDKVRTIYQAEIIQL 180 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 + N F++ VRN+VG+++++G P S I ++L +K+R A TA EGL Sbjct: 181 DKENFKFIFRGNGFLYKQVRNMVGTVIKIGNDRMPVSQIDKILTSKNRNFAGPTAAPEGL 240 Query: 246 YLVAVDYPDRYDL 258 YL V Y ++ Sbjct: 241 YLKEVKYEPINEI 253 >UniRef50_B3QUL0 Pseudouridylate synthase n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QUL0_CHLT3 Length = 265 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 82/249 (32%), Positives = 135/249 (54%), Gaps = 5/249 (2%) Query: 7 PPVYKIALGIEYDGSKYYGWQRQN---EVRSVQEKLEKALSQVANEPITVFCAGRTDAGV 63 + + +EYDG+ + GWQRQ +++Q ++E L +V EP+ + AGRTDAGV Sbjct: 16 RSRRNLKMLLEYDGTDFAGWQRQPQNLHQKTIQGEIESVLCRVLQEPVELIAAGRTDAGV 75 Query: 64 HGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIY 123 H QV +F T + +N LP I + ++ P++F+ARF A +R YRY + Sbjct: 76 HAKAQVANFLTENSLSISRLKHALNGLLPSQIKIIEIEDAPENFNARFDAKSRTYRYFLL 135 Query: 124 NHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV 183 A+LS+ + DA M+ Q +LG++DFTSF Q++T + Sbjct: 136 TR--YSALLSRFTGIYRYDFDARAMNACCQEILGQHDFTSFSKAGSQTKTRICTIEKARW 193 Query: 184 TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 + ++++I+AN F+H MVR +VG++++VG + +AKD LAA +A+ + Sbjct: 194 YQRKNGLMLEIRANRFLHSMVRLLVGTMIKVGNGELSVQDFDAIFSAKDVCLAATSAQPQ 253 Query: 244 GLYLVAVDY 252 GL+L V+Y Sbjct: 254 GLFLWHVEY 262 >UniRef50_C4XPZ9 tRNA pseudouridine synthase A n=4 Tax=Desulfovibrio RepID=TRUA_DESMR Length = 274 Score = 284 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 92/272 (33%), Positives = 128/272 (47%), Gaps = 15/272 (5%) Query: 9 VYKIALGIEYDGSKYYGWQRQN--EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGT 66 + ++ L + YDG+ + GWQ Q R+VQ LE+AL+ + +P+ V AGRTD+GVH Sbjct: 1 MARLRLTLAYDGTDFAGWQIQAAGGGRTVQGCLEEALATLCGQPVRVHGAGRTDSGVHAL 60 Query: 67 GQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 QV H + R W + A LP D+AV + V DFH+RF AT + YRY ++ Sbjct: 61 AQVAHADVPEHRAGLPWGKALTALLPKDVAVTEARLVAPDFHSRFDATGKEYRYTLWTRP 120 Query: 127 -LRPAVLSKGVTHF--YEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHIN- 182 V Y LD M A +GE+DF +F+ + R V ++ Sbjct: 121 GHVLPWRRPYVWDVGRYGTLDVAAMEACAGLFVGEHDFAAFQNAGTDVHSTVRRVWDVSR 180 Query: 183 -VTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAK 241 V F+ MVRN++G+L+ VG +A LLAA DR A TA Sbjct: 181 LAGTGPDETVWRFHGEGFLKQMVRNLMGALVAVGRGKATAEDVATLLAAGDRRRAPGTAP 240 Query: 242 AEGLYLVAVDY--------PDRYDLPKPPMGP 265 A+GL L AV+Y P D P P G Sbjct: 241 AQGLCLHAVEYGAPGVAGLPGLGDKPAEPAGS 272 >UniRef50_C1ZAN4 Pseudouridylate synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZAN4_PLALI Length = 305 Score = 284 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 132/280 (47%), Gaps = 22/280 (7%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + L I YDG+ Y GWQ Q S+Q L +A+ + E ++ AGRTDAGVH GQ Sbjct: 5 SRTLKLTIAYDGTAYCGWQTQPNGVSIQSTLMQAIQEFTAETPVLYAAGRTDAGVHAVGQ 64 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 VV F TT+ A + + LP DI +R V+ V FHA+F A + YRY+ +N + Sbjct: 65 VVSFSTTSPVPAANFRPALQRFLPDDIVIRQVEDVQPGFHAQFHARLKTYRYLFHNAPVW 124 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR--- 185 + LD + M A + ++G DF S +T R V+ +V R Sbjct: 125 SPFYRQYALWHRTRLDEQAMDFAIRQIVGTFDFRSLETQWPNRKTSVRTVIKASVQRIRN 184 Query: 186 ------------------HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAEL 227 G ++ ++I AN F+++MVR I G+L+ +G + E+ Sbjct: 185 WNLLGENGPPSEECQLDPEGEFLCMEITANGFLYNMVRTIAGTLIHIGRGKWGPEKLREI 244 Query: 228 LAAKDRTLAAATAKAEGLYLVAVDY-PDRYDLPKPPMGPL 266 + +DR A TA A GLYL VDY P LP + P Sbjct: 245 VDLQDRRRAGETAPAHGLYLWHVDYAPATQSLPTGDLPPA 284 >UniRef50_B6BU98 Pseudouridylate synthase n=1 Tax=beta proteobacterium KB13 RepID=B6BU98_9PROT Length = 258 Score = 284 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 83/248 (33%), Positives = 150/248 (60%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +IA +EY G+ Y G+Q Q + ++Q ++KALS++AN + + +GRTDAGVH GQV Sbjct: 2 RIAAIVEYLGTNYAGFQIQPNLNTIQLCIQKALSKIANHDVKIEASGRTDAGVHALGQVF 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+T + R +W G N+ LP DI+++WV V +FHARF+ R Y+Y+++ + A Sbjct: 62 HFDTESQRPLNSWKRGANSFLPQDISIKWVSEVDKNFHARFNVMEREYQYLLHCNDTPSA 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + + H+ ++ + + + + +G++DFTSFR+ +CQS+ P R + ++ + ++ Sbjct: 122 IWHQKAGHYGYEINFKLLDKVLKEFIGKHDFTSFRSSECQSKKPIRIMHDVSYQKKENFI 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + A+ F+HH +RN++ +++V + +P ++ L KDRT A+ T GLYL + Sbjct: 182 LFKFTADGFLHHQIRNMMSVILDVVSGKKPLDYVQYLFEVKDRTKASNTFSPNGLYLANI 241 Query: 251 DYPDRYDL 258 Y ++ + Sbjct: 242 KYEKKFKI 249 >UniRef50_D1BP31 Pseudouridylate synthase n=3 Tax=Veillonella RepID=D1BP31_VEIPT Length = 261 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 83/249 (33%), Positives = 130/249 (52%), Gaps = 2/249 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVR--SVQEKLEKALSQVANEPITVFCAGRTDAGVHGT 66 + I + + YDG+ G+Q+Q + +VQ LE LS++ NEPI ++ A RTDAGVH Sbjct: 1 MRNIQIIVAYDGTDLAGYQKQPNDKGLTVQGCLEYGLSRICNEPIQIYGASRTDAGVHAK 60 Query: 67 GQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 QV F+T+ + A++P DI V +P D+ R++ + Y Y I+N Sbjct: 61 FQVCTFQTSGTIPVENIPRAMIAHIPKDIVVIEAIEIPLDWKPRWNIYGKEYVYTIHNQL 120 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 + + + H +PLD +RM A L+G +DFT+ + P + +M I V Sbjct: 121 IADPLTQRYHWHVKKPLDIDRMQAAGNELVGTHDFTTLKGTNSTPADPVKTIMGIRVEAR 180 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G V + + + F++HMVRNI G L++VG + I LAAKDR + TA A+GL Sbjct: 181 GSQVTISVVGDGFLYHMVRNIAGLLVDVGLGRRKVEDIKGYLAAKDRRVIGKTAPAQGLC 240 Query: 247 LVAVDYPDR 255 L + + + Sbjct: 241 LEEIFFTEE 249 >UniRef50_Q6G7A2 tRNA pseudouridine synthase A n=59 Tax=Staphylococcus RepID=TRUA_STAAS Length = 267 Score = 283 bits (726), Expect = 3e-75, Method: Composition-based stats. Identities = 86/251 (34%), Positives = 131/251 (52%), Gaps = 1/251 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +I + I Y G+ + G+Q Q R+VQ++ EK L ++ + + + RTD GVH Q Sbjct: 2 RILVEIAYQGNNFLGFQIQQNGRTVQQQFEKLLQRMHKRHVRIHPSSRTDRGVHAIQQYF 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+T + W +N LP DI V V TV DDFH R+ +RYRY +Y + R Sbjct: 62 HFDTELNIPMSQWQYAMNRTLPDDIYVNNVVTVDDDFHCRYDCVGKRYRYKVYQAQHRDP 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 S T E LD ++M+RAAQ +G +DFT F + + + + R + + + Sbjct: 122 FQSGLKTFIPETLDLDKMNRAAQQFIGTHDFTGFCSQKTEVESKVRTLYQSEIVKTDDGF 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + + F+++MVR +V L+EVG S + +LL +K+R TA AEGLYL + Sbjct: 182 DYIVTGSGFLYNMVRVLVAFLIEVGKGRHEISDVPKLLESKNRKNVPFTATAEGLYLEKI 241 Query: 251 DYPDRYDLPKP 261 Y D +L K Sbjct: 242 -YLDENELLKD 251 >UniRef50_C5T803 Pseudouridylate synthase n=2 Tax=Comamonadaceae RepID=C5T803_ACIDE Length = 289 Score = 283 bits (726), Expect = 3e-75, Method: Composition-based stats. Identities = 120/272 (44%), Positives = 166/272 (61%), Gaps = 12/272 (4%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 ++ALG+ Y+G +Y GWQ Q +VQ+ LE AL + + ++ CAGRTDAGVHG QV Sbjct: 18 TRVALGVSYNGQRYNGWQSQPSGNTVQDHLEAALGRFTTQQVSTLCAGRTDAGVHGLMQV 77 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 VHF+TT +R DA+W G NA LP DIAV+W + VP FHAR SA ARRY Y++ +RP Sbjct: 78 VHFDTTLVRPDASWVRGTNAFLPQDIAVQWARAVPSGFHARASAVARRYAYVLLQSPVRP 137 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR---- 185 +V + V + L+ + M +AA LLGE+DFTSFRA CQ+++P + + I++TR Sbjct: 138 SVEAGRVGWVFNALNEDAMRQAALRLLGEHDFTSFRASACQAKSPVKTLQRIDITRTPCP 197 Query: 186 --------HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAA 237 Y + +ANAF+HHM+RNI+GSL+ VG +P SWI+E+L A R AA Sbjct: 198 RASAAGEFDACYWRFEFEANAFLHHMIRNIMGSLVAVGKGTKPPSWISEVLDAHSRDAAA 257 Query: 238 ATAKAEGLYLVAVDYPDRYDLPKPPMGPLFLA 269 T +GLY Y ++ LP +L Sbjct: 258 PTFSPDGLYFQGPVYAPQWGLPGRTAAYDWLP 289 >UniRef50_Q3A9U9 Pseudouridylate synthase n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3A9U9_CARHZ Length = 246 Score = 283 bits (724), Expect = 5e-75, Method: Composition-based stats. Identities = 81/243 (33%), Positives = 124/243 (51%), Gaps = 3/243 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVR-SVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 L I YDG+ + G+Q+Q ++Q LE+ L ++ EP+ V AGRTDAGVH GQV Sbjct: 6 NFKLTIAYDGTNFAGFQKQKNTPQTIQGILEEKLHKILKEPVKVIGAGRTDAGVHALGQV 65 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 V+F +N LP I V + VPDDFHAR+SA + YRY +Y Sbjct: 66 VNFSAPWKAPVDKIPEILNNTLPTAIRVLEAEIVPDDFHARYSARKKEYRYYLYYGP-PS 124 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 + + LD E++ +A + L+G +DF+ F A + P + + + G Sbjct: 125 PFYERYAWALPQKLDREKVAKALEYLIGTHDFSGFGAAGSSGKNPIKTMFEASYREDGFL 184 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 A++F++ M R + G+L+E+G + + E+L ++ LA TA A GL+LV Sbjct: 185 GYFTFVADSFLYKMARILTGTLVEIGLNGH-PERVREILTTGNKKLAGKTAPAHGLFLVK 243 Query: 250 VDY 252 V Y Sbjct: 244 VFY 246 >UniRef50_Q04BY4 tRNA pseudouridine synthase A n=79 Tax=Firmicutes RepID=TRUA_LACDB Length = 262 Score = 282 bits (723), Expect = 7e-75, Method: Composition-based stats. Identities = 87/248 (35%), Positives = 134/248 (54%), Gaps = 4/248 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVA-NEPITVFCAGRTDAGVHGTGQV 69 + L + YDG ++G+Q Q R++Q +E+ L Q+ + + VF +GRTDAGVH GQV Sbjct: 4 RYKLTLSYDGHDFHGFQSQPGQRTIQGTVEEILKQMTKGQEVRVFGSGRTDAGVHSVGQV 63 Query: 70 VHFETTAL-RKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 +HF+ A +N+ LP D+ + V DFH+RFS + YRY + Sbjct: 64 IHFDYPGREIPAANMIKALNSQLPMDMVFTDCEIVDKDFHSRFSVKGKWYRYRVSLDGFV 123 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV--TRH 186 H+ P+D E+M AA+ LLG +DFTSF A Q R++ ++NV Sbjct: 124 NPFKRFYTGHYPYPVDVEKMQEAAKDLLGRHDFTSFAASGGQIEDKVRDMYYVNVALDEE 183 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 V++D A F+++MVR +V +L+E+G +P + ++AAK+R TA+A GLY Sbjct: 184 NNEVIMDFIATGFLYNMVRILVATLLEIGNGRRPVHDLKRVIAAKNRLEVQQTAQACGLY 243 Query: 247 LVAVDYPD 254 L V Y + Sbjct: 244 LYHVFYEE 251 >UniRef50_B5ZN21 tRNA pseudouridine synthase A n=21 Tax=Alphaproteobacteria RepID=TRUA_RHILW Length = 268 Score = 282 bits (722), Expect = 9e-75, Method: Composition-based stats. Identities = 88/249 (35%), Positives = 134/249 (53%), Gaps = 3/249 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + + +EYDG Y GWQRQ SVQ +E A+ + E +++ AGRTD+GVH GQ Sbjct: 1 MPRFRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSIRGAGRTDSGVHAMGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANL---PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 V+H + + +NA+L +++ V+ V + F ARFSA R Y Y I + Sbjct: 61 VIHADLSKAWSPYQLQNALNAHLRLAGERVSILDVEAVAEFFDARFSALRRHYLYRIVSR 120 Query: 126 RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR 185 R A+ + + LD E MH AAQ L+G +DF++FRA CQ+ +P R + ++VTR Sbjct: 121 RAPLALEAGKAWWVPKVLDHEVMHAAAQRLVGRHDFSTFRAAHCQANSPVRTLDRLDVTR 180 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 G + + A +F+H+ +R+ G+L G + L A+DR A +GL Sbjct: 181 SGELIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALEARDRKACGPVAPPDGL 240 Query: 246 YLVAVDYPD 254 Y + VDYPD Sbjct: 241 YFLQVDYPD 249 >UniRef50_C6LCX6 Pseudouridylate synthase n=2 Tax=Lachnospiraceae RepID=C6LCX6_9FIRM Length = 280 Score = 282 bits (722), Expect = 9e-75, Method: Composition-based stats. Identities = 85/277 (30%), Positives = 125/277 (45%), Gaps = 33/277 (11%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVR-SVQEKLEKALSQV--------------------- 46 L + YDG++Y+GW+ + + ++Q KLE L+++ Sbjct: 2 KQNFKLTVTYDGTRYHGWEAKPGIEMTIQGKLEAVLTKMLAFPDDVPVQSLIAPAASVVS 61 Query: 47 -----------ANEPITVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDI 95 P+ V AGRTDAGVH + +N LP DI Sbjct: 62 CNPGAADGMPGCPVPVKVIGAGRTDAGVHAREMTANVHLDTAMLPGDIRDYLNRYLPEDI 121 Query: 96 AVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCL 155 VR V V D FH+R++AT + YRY + L+P K V + D M +AA L Sbjct: 122 CVREVCIVSDRFHSRYNATGKTYRYTCFTGPLKPVFDRKYVYVLDKTPDIAAMKKAAGYL 181 Query: 156 LGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVG 215 G +DF SF ++ R + I +T++ Y+ N F+ HMVR + G+L+E G Sbjct: 182 CGTHDFASFCGNPKMKKSTVRTIDSIEITQNNSYLYFMYHGNGFLQHMVRILTGTLLETG 241 Query: 216 AHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 + + ELLAA+ R LA A A+GL L+ VDY Sbjct: 242 YGRRSPESMPELLAARKRALAGFLAPAQGLCLMKVDY 278 >UniRef50_B7A9H2 Pseudouridylate synthase n=2 Tax=Thermaceae RepID=B7A9H2_THEAQ Length = 259 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 88/263 (33%), Positives = 123/263 (46%), Gaps = 10/263 (3%) Query: 9 VYKIALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + +I L EYDG+ + G QRQ +R+VQ +LEKAL + P AGRTDAGVH Sbjct: 1 MRRILLLTEYDGTHFAGLQRQRQGLRTVQGELEKALPHIGALP-KAVAAGRTDAGVHALA 59 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 H + + +N LP D+ V + V DFHAR A R YRY + Sbjct: 60 MPFHIDLQSPIPPEKVPEALNRLLPEDLKVVAAREVAPDFHARKDALWRAYRYRVLLRPH 119 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT--- 184 +L V PLD + M A LLG ++F F ++R R ++ + Sbjct: 120 PSPLLRHRVLWLRRPLDLKAMEEALPLLLGRHNFLGFAK--EETREGVRELLEARLEVLE 177 Query: 185 -RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 GP V K +F+ VR +VG+L+EVG + + +L DR LA +A A Sbjct: 178 GEMGPEVRFYFKGRSFLRGQVRGMVGTLLEVGLGRRSPESVKAILETADRRLAGQSAPAT 237 Query: 244 GLYLVAVDYPDRYDLPKPPMGPL 266 GLY + YP+ + KPP P Sbjct: 238 GLYFLEAAYPE--EKLKPPAHPN 258 >UniRef50_Q8D2P5 tRNA pseudouridine synthase A n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=TRUA_WIGBR Length = 264 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 108/252 (42%), Positives = 168/252 (66%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + K+A GI Y G+ Y GWQ Q + S+QE +E AL + + E I ++CAGRTDA VH Q Sbjct: 1 MKKLAAGISYQGNNYCGWQSQKNIISIQEYVELALFKFSGEKIKIYCAGRTDAKVHALLQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 VVHF T R W LGVN+ LP DI++ WV V ++FHAR+SA A++Y Y+I+N+ R Sbjct: 61 VVHFYTDIKRSYRQWILGVNSYLPYDISIMWVIKVHNNFHARYSAIAKKYLYLIHNNISR 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + K + + L+ M +AAQ L+G++DF+SF+ +CQS+T +R + +I + ++ Sbjct: 121 SGIFRKYCFNVFISLNINDMKKAAQKLIGKHDFSSFKGSECQSKTTYRVIYYIRINKYKE 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Y+ V+IKAN+F++HM+RNI+G+L+E+G + + W++ELL K+ + +A +GLYL Sbjct: 181 YIFVEIKANSFLNHMMRNIIGNLIEIGKGKKSKEWMSELLFLKNNKFSIFSADPKGLYLS 240 Query: 249 AVDYPDRYDLPK 260 V YP +++PK Sbjct: 241 NVYYPFYFNIPK 252 >UniRef50_C0QZT8 tRNA pseudouridine synthase A n=2 Tax=Brachyspira RepID=TRUA_BRAHW Length = 249 Score = 281 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 85/249 (34%), Positives = 143/249 (57%), Gaps = 2/249 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I + I+YDG+ +YGWQ Q +R+VQ ++ KA+ +V E IT++ GRTDAGVH GQ Sbjct: 1 MNNIKITIQYDGTDFYGWQIQPNLRTVQGEIYKAVQKVYGEKITIYGCGRTDAGVHALGQ 60 Query: 69 VVHFETTALR-KDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 V +F + + +N+ L D+ + + +PD F+AR SAT R Y YI++N Sbjct: 61 VANFRVPKMLVPINKVHIALNSYLDRDLRIIKAEEMPDSFNARASATFREYLYIVHNSST 120 Query: 128 RPAVLSKGVTHFYEP-LDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 + + + +D + ++ A+ L+GE++FTSF + + ++ + +R + + R Sbjct: 121 SFPFYERYAWFYRKNVIDEKLINEYARYLIGEHNFTSFCSTEDENDSKFRYLERVKAIRK 180 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G + I+ NAF+H+MVR IVG+L+E +P ++I ++L ++DR A TA A GLY Sbjct: 181 GDTIYFIIRGNAFLHNMVRIIVGTLVEGQKKKKPINFIEDILKSEDRAKAFVTAPAHGLY 240 Query: 247 LVAVDYPDR 255 + D Sbjct: 241 FRRAFFKDE 249 >UniRef50_Q0F2X2 Pseudouridylate synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2X2_9PROT Length = 267 Score = 280 bits (717), Expect = 3e-74, Method: Composition-based stats. Identities = 103/250 (41%), Positives = 144/250 (57%), Gaps = 3/250 (1%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 +IAL +E+DG ++GWQ+Q SVQ L+ AL V EP+TV AGRTDAGVH + Sbjct: 10 QRIALALEFDGRPFHGWQQQENATSVQACLQDALQAVEGEPLTVVAAGRTDAGVHAEALL 69 Query: 70 VHFET---TALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 VH + R A+ G N++LP +I V V+ V DFHARF+ R YRY I+N Sbjct: 70 VHADVSAARWQRSPRAYLHGCNSHLPDEIRVVGVRAVAADFHARFACRGRSYRYQIWNRN 129 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 A+ L+ E M AA LG +DF++ RA CQ+ +++ + + +H Sbjct: 130 TASALQRWRHWWMPRSLNIEAMQGAAVHCLGRHDFSALRAAGCQAAHAEKHIRSLEIVQH 189 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G + + + A+AF++HMVRN+VG+L+EVGA + A LLA++DR L AATA A GLY Sbjct: 190 GHCIHIHVSADAFLYHMVRNLVGNLVEVGAGKRSPDDFAALLASRDRQLGAATAPAHGLY 249 Query: 247 LVAVDYPDRY 256 Y D Y Sbjct: 250 FTDAWYDDFY 259 >UniRef50_B5YGE4 tRNA pseudouridine synthase A n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=TRUA_THEYD Length = 254 Score = 279 bits (715), Expect = 6e-74, Method: Composition-based stats. Identities = 76/255 (29%), Positives = 119/255 (46%), Gaps = 12/255 (4%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I + I+YDG+ Y+GWQRQ + R++Q +E+ L ++ I + AGRTDAGVH GQ Sbjct: 1 MVNIKMTIQYDGTNYFGWQRQRKGRTIQATIEECLRKIFQREIKIRGAGRTDAGVHALGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V F+ +N+ LP DI + ++ V D FH + S + Y Y + Sbjct: 61 VATFKAELKMSLDILKKVLNSLLPNDIKIIKLENVEDSFHPQHSVKRKSYIYYLCFDEEC 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHI------- 181 + + V H+ LD M A G DFT+F + R V Sbjct: 121 SCFIQRYVWHYPWKLDLSLMEEALSLFTGTKDFTAFSGS-TDVKNKIRTVHDFTMQLLTK 179 Query: 182 ----NVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAA 237 ++ +G ++ I+A+ F+ +MVRN+VG ++E+G I E + R Sbjct: 180 LCFMDMCLNGNFIKFRIEADGFLRYMVRNLVGCIIEIGKGKLRIESIQEAFESGKRPSTM 239 Query: 238 ATAKAEGLYLVAVDY 252 TA + GL+L V Y Sbjct: 240 QTAPSNGLFLEKVIY 254 >UniRef50_A9BNH5 tRNA pseudouridine synthase A n=9 Tax=cellular organisms RepID=TRUA_DELAS Length = 282 Score = 279 bits (715), Expect = 6e-74, Method: Composition-based stats. Identities = 108/281 (38%), Positives = 157/281 (55%), Gaps = 22/281 (7%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++ALG+ Y+G +Y GWQ Q ++Q+ LE AL + A + + CAGRTDAGVHG QVV Sbjct: 2 RVALGVAYNGQRYSGWQSQLSGNTIQDHLEAALGRFAAQEVHTLCAGRTDAGVHGLMQVV 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+T R +W G N LP DIAV+W + VPD FH+R ATARRY Y++ +RP+ Sbjct: 62 HFDTPLDRAPFSWVRGTNTFLPPDIAVQWAQPVPDAFHSRACATARRYAYVLLQSPVRPS 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR----- 185 V + V + LD + M AA+ LLGE+DF+SFRA CQ+++P + + +++TR Sbjct: 122 VEAGRVGWVFHALDGDAMQAAARHLLGEHDFSSFRASGCQAKSPVKTLHRLSITRRMAGD 181 Query: 186 -----------------HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELL 228 Y + + +AF+HHMVRNI+G L+ +G W+ ++L Sbjct: 182 GAQMAAASSMRPGDAAMECCYWRFEFEGSAFLHHMVRNIMGCLIAIGQGTYAPQWMQQVL 241 Query: 229 AAKDRTLAAATAKAEGLYLVAVDYPDRYDLPKPPMGPLFLA 269 A+ R AA T +GLY + Y + LP +L Sbjct: 242 DARSRDAAAPTFSPDGLYFLGPVYDPSWGLPSRSPAYDWLP 282 >UniRef50_Q88XU9 tRNA pseudouridine synthase A n=6 Tax=Lactobacillales RepID=TRUA_LACPL Length = 262 Score = 279 bits (715), Expect = 6e-74, Method: Composition-based stats. Identities = 82/252 (32%), Positives = 127/252 (50%), Gaps = 5/252 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPIT---VFCAGRTDAGVHG 65 + + + YDG+ + G+QRQ R+V++ + KA++++A +P+ ++ AGRTDAGVH Sbjct: 2 TTRYKVVLAYDGTNFAGFQRQPHQRTVEQVVTKAVNKMAKDPVEPIVIYGAGRTDAGVHA 61 Query: 66 TGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 GQ +HF+ G+N+ LP D V+ V VP+DFHAR+ +RY Y Y + Sbjct: 62 FGQTLHFDLPYEINPEGVRRGLNSMLPMDTIVKAVSIVPNDFHARYDTVGKRYWYRAYQN 121 Query: 126 RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMH--INV 183 HF D +R+ +A L G +DF++F A Q+ R + Sbjct: 122 EFVDPFKRHYTGHFKFAADIDRIQQAIGDLEGRHDFSTFVASGSQAHDHVREIYSAKAWA 181 Query: 184 TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 + + + F+++ VR +V LME+G + I LLAAKDR A TA A Sbjct: 182 LPDEREIQFEFCGSGFLYNQVRIMVAVLMEIGQGRRAVDCIPALLAAKDREQARGTAPAA 241 Query: 244 GLYLVAVDYPDR 255 GLY+ V Y Sbjct: 242 GLYMKKVYYEQN 253 >UniRef50_B9Y957 Pseudouridylate synthase n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y957_9FIRM Length = 268 Score = 279 bits (715), Expect = 7e-74, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 123/247 (49%), Gaps = 4/247 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVR--SVQEKLEKALSQVANEPITVFCAGRTDAGVHGT 66 + + + YDG Y GWQ Q R ++Q+ ++ A+S + +P+++ +GRTDA VH Sbjct: 2 MQRFKAVVSYDGFDYAGWQIQPAERGATIQQTIQDAISVICQQPVSITGSGRTDAQVHAW 61 Query: 67 GQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 GQV HF+ W +N +LP DI +R V+ V FHARF A +RY Y I Sbjct: 62 GQVFHFDVDFSLNAFQWKRAINGHLPKDIHIRSVEAVDSRFHARFDAIGKRYEYRIQLGE 121 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRA-VQCQSRTPWRNVMHINVTR 185 + L+ + M A L+GE+DF+SF A + + R + + + Sbjct: 122 -ANVFTRRYAFQSPWTLNVQAMREGAAYLIGEHDFSSFCANSRAEMPDQARTITRLELAE 180 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 + + + + F+ +MVR + G+L+EVG + +L A+D+ + AK +GL Sbjct: 181 ENDQLRLIYEGSGFLRYMVRMMTGTLIEVGRGRLAPQDVQWMLQAQDKQICHFNAKPQGL 240 Query: 246 YLVAVDY 252 LV V Y Sbjct: 241 TLVEVYY 247 >UniRef50_C4GC36 Pseudouridylate synthase n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GC36_9FIRM Length = 325 Score = 279 bits (715), Expect = 7e-74, Method: Composition-based stats. Identities = 91/299 (30%), Positives = 126/299 (42%), Gaps = 54/299 (18%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN------------EPITVFCA 56 + L I YDG++Y GW+ Q ++Q KLE+AL+++ P+ + A Sbjct: 27 MQNYRLKIAYDGTRYAGWEHQPGQETIQGKLEQALARMCGLAMDERDFMRPDTPVKLIGA 86 Query: 57 GRTDAGVHGTGQVVHF------------------------------------------ET 74 GRTDAGVH G V Sbjct: 87 GRTDAGVHARGMVASIAFEAPAYRPGPWERRESKGRDRGNQPGNMTWQAEPSAQLTRRNQ 146 Query: 75 TALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSK 134 +N LP DI+V K FHAR+ A + Y+Y ++ R++P + Sbjct: 147 PRSMTCQEMQDYLNHYLPDDISVVAFKEAAARFHARYKAVGKTYQYTAFDGRVKPVFNRR 206 Query: 135 GVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDI 194 T E LD M AA CLLGE+DF SF ++ R V I + R YV Sbjct: 207 YYTPLEEELDVSAMQEAANCLLGEHDFRSFCGNPKMKKSTVRRVDRIEIRRSKGYVYFSF 266 Query: 195 KANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYP 253 F+ +MVR +VG+LMEVG H + ++L A+DR A TA A GL L+ VDY Sbjct: 267 HGTGFLQNMVRILVGTLMEVGWHRMRPQDVEKILEARDRKAAGPTAPARGLCLIRVDYD 325 >UniRef50_D1N376 Pseudouridylate synthase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N376_9BACT Length = 272 Score = 279 bits (714), Expect = 8e-74, Method: Composition-based stats. Identities = 80/260 (30%), Positives = 127/260 (48%), Gaps = 6/260 (2%) Query: 1 MSDQQQP--PVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVA-NEPITVFCAG 57 MS ++ P P + L I YDG+ Y GWQ Q +VQ+++++ L+++ +PI + + Sbjct: 1 MSIEETPYEPYKRYLLEIAYDGTNYSGWQIQPHRVAVQQRVQEILTKMYNGQPIHLIGSS 60 Query: 58 RTDAGVHGTGQVVHFETT--ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATA 115 RTDAGVH + T VN LPGDI +R V+ VP +FHAR+ A Sbjct: 61 RTDAGVHAQRFAASYLTPVRPDIPTDKILRAVNRQLPGDIKLRTVREVPLEFHARYDALG 120 Query: 116 RRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPW 175 + Y Y++ + +D E++ A+Q L G +D++SF + Sbjct: 121 KAYTYVLNLGD-PSPFTDRYTWRPIHRMDVEKIRAASQVLTGTHDYSSFVVERSLIDEAV 179 Query: 176 RNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTL 235 R + I+V G + V N F++ M+R ++G+L GA + +L A DRT+ Sbjct: 180 RTIYRIDVQEFGQFCCVTFVGNGFLYKMIRCLMGTLEAAGAGKLSPEAVRRILEACDRTV 239 Query: 236 AAATAKAEGLYLVAVDYPDR 255 A TA GL+L+ V Y Sbjct: 240 APETAPPNGLFLMKVFYTPE 259 >UniRef50_B0N4B2 Pseudouridylate synthase n=4 Tax=Bacteria RepID=B0N4B2_9FIRM Length = 245 Score = 279 bits (714), Expect = 8e-74, Method: Composition-based stats. Identities = 87/247 (35%), Positives = 136/247 (55%), Gaps = 2/247 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + ++ + YDGSK++G+Q QN++R+VQ +++KAL + E I + +GRTDA VHGT Q Sbjct: 1 MVRVKCSVSYDGSKFHGFQVQNKLRTVQGEIQKALKNICKEEIIIHGSGRTDAKVHGTKQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V HF+TT +A W +N LP DI + V ++FH+R+SA + Y Y++ Sbjct: 61 VFHFDTTREMPEAQWKRAINHFLPNDIYILDSYFVDENFHSRYSAIKKEYHYLLSTKEY- 119 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + + + PLD E M AA+ +GE+DF SF + Q R + +++T Sbjct: 120 SPFETNYIFQYGRPLDLELMREAAKIFIGEHDFASFCSYD-QYGNTIRELYELSITNEKG 178 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + + N F +MVR+IVG L++VGA + + ELL +K AK +GLYL Sbjct: 179 IIKFILVGNGFRRYMVRHIVGGLIQVGAKRVTKERLQELLDSKGEQKCLFKAKPQGLYLH 238 Query: 249 AVDYPDR 255 V Y + Sbjct: 239 EVFYDEN 245 >UniRef50_A5FAV0 Pseudouridylate synthase n=14 Tax=Bacteroidetes RepID=A5FAV0_FLAJ1 Length = 284 Score = 278 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 86/243 (35%), Positives = 118/243 (48%), Gaps = 2/243 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + + Y+G+ Y+GWQ Q SVQE L KALS + N I V AGRTD GVH Sbjct: 42 RYFIHFAYNGTHYHGWQFQPNASSVQETLNKALSVLLNSTINVMGAGRTDTGVHAEEMYG 101 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+ +N+ LP DIAV + V DD H RF AT R Y Y I ++ Sbjct: 102 HFDLEKSIDIPVLVHKLNSYLPKDIAVYNLIPVHDDAHCRFDATKRTYEYHINT--VKNP 159 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 L + + + LD E M+ AA+ LL DF F V T + + + Sbjct: 160 FLEELSWYVTQKLDVELMNEAAKILLKHTDFQCFSKVNTDVNTFDCTIFEAYWKQENNKL 219 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 V I AN F+ +MVR IVG+L+ +G H + ++A+K+R A + A GLYL + Sbjct: 220 VFTISANRFLRNMVRAIVGTLINIGLHKITLADFENIIASKNREKAGFSVPAHGLYLTKI 279 Query: 251 DYP 253 Y Sbjct: 280 YYD 282 >UniRef50_B9KZV8 Pseudouridylate synthase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KZV8_THERP Length = 279 Score = 278 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 95/269 (35%), Positives = 124/269 (46%), Gaps = 14/269 (5%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + L Y+G+ + G QRQ +R+VQ LE+AL+++A EP+ V AGRTDAGVH GQ Sbjct: 3 RQRYRLDFGYEGTAFSGSQRQPGLRTVQGVLEEALARLAGEPVRVALAGRTDAGVHAVGQ 62 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V F+ +A + A LP D+ V V +P FHAR A R YRY I+ Sbjct: 63 VASFDLCWRHDEATLARALQAWLPEDVVVYRVARMPAGFHARRGAVDREYRYRIWQGEQP 122 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQ----CQSRTPWRNVMHINVT 184 P L + V F LD M AAQ LG +DF SF + R + Sbjct: 123 PLFLRRFVWRFAGLLDLRAMQEAAQFFLGSHDFRSFAGHGLGGPKATTPRVRTITMAEWH 182 Query: 185 ----------RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRT 234 V ++AN F+ MVR +V +L+ VG SWI+ELL DR Sbjct: 183 LLSPVVEPVGTGAQIVEFRVRANGFLPQMVRTMVSALVRVGTGAAEPSWISELLERCDRR 242 Query: 235 LAAATAKAEGLYLVAVDYPDRYDLPKPPM 263 A A GL L V YP+ L P Sbjct: 243 AAPPPAPPGGLVLWRVRYPEDIALATPAS 271 >UniRef50_Q6MQH6 tRNA pseudouridine synthase A n=1 Tax=Bdellovibrio bacteriovorus RepID=TRUA_BDEBA Length = 262 Score = 278 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 92/255 (36%), Positives = 133/255 (52%), Gaps = 6/255 (2%) Query: 9 VYKIALGIEYDGSKYYGWQRQN--EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGT 66 K+ + YDG+ + GWQ+Q + SV + +E+ALS+V NE IT+F +GRTDAGVH Sbjct: 2 TTKVRFTVAYDGTGFCGWQKQKPEDQISVAQVIEEALSKVFNEKITLFASGRTDAGVHAL 61 Query: 67 GQVVHFETTALRKDA---AWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIY 123 QV HF T +N++LP I + PDDFHA SAT + YRY+I Sbjct: 62 NQVCHFSTHRKIDPNKKWDLCWALNSHLPPSIVAKKAWIAPDDFHATLSATHKTYRYLIV 121 Query: 124 NHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV 183 N A L++ P+D E + +++ LLG DF SF++V R + + Sbjct: 122 NKPRPSAHLNRYADWVRLPIDIEHLQESSKYLLGNQDFKSFQSVGTPVPDTVREIYKADW 181 Query: 184 T-RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 R + I + F+ MVRNIVG+ + + S + E++AA+DR A A A Sbjct: 182 EWRKPGVMQFTITGSGFLKQMVRNIVGTSLFLERKGLDPSKMQEIIAAQDRMKAGPPAPA 241 Query: 243 EGLYLVAVDYPDRYD 257 +GLYL+ V YP D Sbjct: 242 QGLYLMKVYYPQDLD 256 >UniRef50_D1XYC0 Pseudouridylate synthase n=2 Tax=Prevotella RepID=D1XYC0_9BACT Length = 255 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 82/257 (31%), Positives = 118/257 (45%), Gaps = 15/257 (5%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + + + YDGSKY+GWQ Q SVQE LEKA+S + EPI + AGRTDAGVH Sbjct: 1 MQRYFITLSYDGSKYHGWQIQPNGSSVQETLEKAISVLLREPIAIIGAGRTDAGVHARMM 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V HF+ T +N LP DI+V ++ V +D HARFSA+ R Y Y ++ + Sbjct: 61 VAHFDFTGSVDCHQMVYRLNRLLPHDISVSKIEPVTNDLHARFSASRRTYHYYLHTQK-- 118 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV----- 183 + + LD + M+ AAQ L+G DF F +T + Sbjct: 119 NIYQRQYSCYMSYALDFDLMNEAAQYLIGTKDFKCFCKAGADVKTTICELTEARWVPIRA 178 Query: 184 --------TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTL 235 I AN F+ +MVR +VG+L++VG ++ R+ Sbjct: 179 ELSMPLSSKEQPTDWCFIISANRFLRNMVRAVVGTLVDVGRGKLSLEAFKAIVDGGTRSD 238 Query: 236 AAATAKAEGLYLVAVDY 252 A + L+L V Y Sbjct: 239 AGESMPGNALFLWEVIY 255 >UniRef50_C5CGS8 tRNA pseudouridine synthase A n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=TRUA_KOSOT Length = 250 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 89/248 (35%), Positives = 129/248 (52%), Gaps = 3/248 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + A + YDGS ++G+Q Q R+VQ E+AL ++ I AGRTD GVH GQ Sbjct: 1 MKRFAAVVVYDGSNFFGYQIQPNKRTVQGVFEEALERIHKAKIPTDGAGRTDTGVHAYGQ 60 Query: 69 VVHFETT-ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 V+ F + +NANLP DI VR + VP +F RF+A R Y Y I N + Sbjct: 61 VIAFTSNLDRLTPKHMKDALNANLPDDIYVRRIHEVPSNFSPRFAAKKRIYHYYILNTKE 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR-H 186 K F +D RM +A++ L+GE+DFTSFR R+ R + I + R Sbjct: 121 PDLFRRKYFWWFPYEVDLNRMRQASRYLIGEHDFTSFRT-GHDDRSTIRTITGIRILRLQ 179 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 +++ ++ +F+ MVRNIVG LM VG E+L A+DR+ ++A A GL Sbjct: 180 KNIILIRVEGISFLRRMVRNIVGLLMRVGTGGIEPKKTKEILEARDRSKLPSSAPAHGLV 239 Query: 247 LVAVDYPD 254 L V + + Sbjct: 240 LHKVIFDE 247 >UniRef50_Q72I65 tRNA pseudouridine synthase A n=2 Tax=Thermus thermophilus RepID=TRUA_THET2 Length = 253 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 85/256 (33%), Positives = 119/256 (46%), Gaps = 8/256 (3%) Query: 9 VYKIALGIEYDGSKYYGWQRQN-EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + ++ L EYDG+ + G QRQ +R+VQ +LE+AL + P AGRTDAGVH Sbjct: 1 MRRLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGIGALP-KAVAAGRTDAGVHALA 59 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 H + + +N LP D+ V + V DFHAR A R YRY I Sbjct: 60 MPFHVDVESAIPVEKVPEALNRLLPEDLKVVGAREVAPDFHARKDALWRAYRYRILVRPH 119 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT--- 184 +L PLD E M A LLG ++F F ++R R ++ + Sbjct: 120 PSPLLRHRALWVRRPLDLEAMEEALSLLLGRHNFLGFAK--EETRPGERELLEARLQVAE 177 Query: 185 -RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 G V + + +F+ VR +VG+L+EVG +P + +L DR LA TA A Sbjct: 178 GEAGLEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPESLKAILKTADRRLAGPTAPAH 237 Query: 244 GLYLVAVDYPDRYDLP 259 GLY V YP+ P Sbjct: 238 GLYFVEAAYPEEKLSP 253 >UniRef50_A5KLX7 Pseudouridylate synthase n=3 Tax=Clostridiales RepID=A5KLX7_9FIRM Length = 260 Score = 277 bits (710), Expect = 2e-73, Method: Composition-based stats. Identities = 82/261 (31%), Positives = 118/261 (45%), Gaps = 17/261 (6%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEV-RSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + L I YDG+ Y GWQRQ++ R++Q LE+ L + + +GRTDAGVH +G Sbjct: 1 MRTYKLTIAYDGTNYQGWQRQSDTDRTIQGILEETLENCIGYQVQIDGSGRTDAGVHASG 60 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 Q A +T +N LP DI + V+ V + FHAR SA + Y Y I Sbjct: 61 QTASVVLPGKVDTALFTEKMNGCLPPDIRILDVELVKNGFHARKSAVGKVYEYRIDTGIK 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH- 186 + K HF D RM AA L G + F + + +R+ R + I + Sbjct: 121 QDVFTRKYSGHFPGEPDLARMREAAGYLTGTH-FFAEYTDKKDNRSVRRTIYSIMIRDER 179 Query: 187 --------------GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKD 232 G +V+ F++HMVR + G+L+EVG + + E L D Sbjct: 180 KDFLPCGKSDQIGNGNCIVIRYDGTGFLYHMVRILTGTLLEVGMRERTAESVKEALLTGD 239 Query: 233 RTLAAATAKAEGLYLVAVDYP 253 R+ A A A GL+L V Y Sbjct: 240 RSKAGFLAPAGGLFLREVRYE 260 >UniRef50_B0S2E1 tRNA pseudouridine synthase A n=3 Tax=Bacteria RepID=TRUA_FINM2 Length = 244 Score = 277 bits (709), Expect = 3e-73, Method: Composition-based stats. Identities = 83/244 (34%), Positives = 135/244 (55%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I L ++YDGSK+YGWQ+ N++ SVQ ++EKA++++ ++P+ + AGRTD GVH GQ Sbjct: 1 MKNIKLTVQYDGSKFYGWQKLNDLPSVQLEIEKAVTKMVHQPVKINGAGRTDKGVHAKGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V +F + +GVN I + + + DFHARFSA ++ Y+YI+ N Sbjct: 61 VCNFIVDTDISANQFLMGVNHFTSDSIVIVKSEEMDLDFHARFSAKSKTYKYILCNKYYM 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + H LD + + + L+G++DFTSF + P R + I + + Sbjct: 121 EPWFNDYKGHRKYYLDFDLLLKCRDMLIGKHDFTSFVNDLEEDINPVRTIDEITIEKIDD 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 +V KA +F+ +MVR +VGS+++V + W+ L KDR A T + GLYL+ Sbjct: 181 DIVFTFKAESFLRNMVRILVGSMVDVARGRKSIDWLKNALENKDRQSAGITIEPSGLYLM 240 Query: 249 AVDY 252 ++Y Sbjct: 241 DIEY 244 >UniRef50_C0GLA2 Pseudouridylate synthase n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GLA2_9DELT Length = 247 Score = 276 bits (706), Expect = 7e-73, Method: Composition-based stats. Identities = 89/244 (36%), Positives = 125/244 (51%), Gaps = 2/244 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++ L + YDG+ Y GWQ Q + ++Q +LEKALS++ + I V +GRTDAGVH GQV Sbjct: 4 RVRLTLAYDGTGYNGWQIQKDGLTIQGELEKALSRICSASIRVHGSGRTDAGVHALGQVA 63 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+ + W +NA LP I V FHARFSA A++Y Y ++ Sbjct: 64 HFDPPPKFLNVPWNRALNAVLPPGIRVLDFARTDRKFHARFSARAKQYSYTLWTQGAFFY 123 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH--GP 188 + PLD E M A CL G +DF F + R V +I + Sbjct: 124 PQRRNFVWNTGPLDLEAMQEATTCLTGSHDFNCFMNKGTEITDTIRTVRNILLAPGFTPQ 183 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 VV I+A+ F+ M RNIV +L++VG ++ + ++ +DR LA ATA A GL L Sbjct: 184 ETVVWIQADGFLKQMARNIVSALVQVGRKKLSQAELKSIIQGRDRALAPATAPARGLCLE 243 Query: 249 AVDY 252 V Y Sbjct: 244 HVTY 247 >UniRef50_A6LDA7 tRNA pseudouridine synthase A n=46 Tax=Bacteria RepID=TRUA_PARD8 Length = 252 Score = 276 bits (706), Expect = 7e-73, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 123/248 (49%), Gaps = 3/248 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + + + Y+G + GWQ Q +VQ+ +E+AL+ + P+ + AGRTDAGVH Sbjct: 1 MRRYFIYLGYNGKNFRGWQIQPNGMTVQQSIEEALAILMRTPVPIVGAGRTDAGVHAHLM 60 Query: 69 VVHFETTALR-KDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 + HF+ +N LP DIAV + V + HARF AT+R Y+Y + + Sbjct: 61 IAHFDWEEPIGDLVFLAEKLNRLLPKDIAVYKIVPVVPEAHARFDATSRTYKYYVTTKK- 119 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + V LD E M+ A + L DFTSF + +T ++ H T+ G Sbjct: 120 -DPFNHELVYKLPGRLDFEAMNEACKVLFDYIDFTSFSKLHTDVKTNNCHIQHAGWTQEG 178 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 V I+A+ F+ +MVR IVG+L+EVG ++ AKDR A + L+L Sbjct: 179 DIWVFTIRADRFLRNMVRAIVGTLLEVGRGRLTIDGFRNVIEAKDRCKAGTSVPGHALFL 238 Query: 248 VAVDYPDR 255 V V YP+ Sbjct: 239 VDVTYPEE 246 >UniRef50_A9B439 Pseudouridylate synthase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B439_HERA2 Length = 272 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 92/262 (35%), Positives = 125/262 (47%), Gaps = 12/262 (4%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 +AL EY G+ + G Q Q R+VQ +LE A ++ +E AGRTDAGVH Q Sbjct: 2 SRTLALCFEYLGTAFCGSQWQPGGRAVQTELETAWQRLTSETGRWIFAGRTDAGVHALAQ 61 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V H + R +NA P DI+V +P FHARFSA R YRY+ + Sbjct: 62 VAHIVSDTPRSLDTIAKAINAITPPDISVHEAWEMPTGFHARFSARQRTYRYVFDSAPAP 121 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG- 187 A LS V LD M A L+G +DF +F + R M + Sbjct: 122 SATLSGRVLRLDHQLDWAAMQAALDTLIGTHDFAAFAGAG-HEGSTTRTCMLAQLRPAEW 180 Query: 188 ---PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 P V+ ++ANAF+ HMVRNIVG+L+ VG ++A++DR A TA +G Sbjct: 181 LGRPVTVLHLQANAFLKHMVRNIVGTLLMVGDGRLSLEAWQAIIASRDRRNAGPTAPPQG 240 Query: 245 LYLVAVDYPDRYDLPKPPMGPL 266 LYL ++ Y P + PL Sbjct: 241 LYLESIGYD-------PALQPL 255 >UniRef50_Q11XU3 Pseudouridylate synthase n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11XU3_CYTH3 Length = 248 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 126/245 (51%), Gaps = 3/245 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + L I Y G+ Y+GWQ Q +VQ L+KALS V I + +GRTD GVH + Q+V Sbjct: 2 RYFLDISYRGANYHGWQIQENAVTVQGVLQKALSNVLGAKIDILGSGRTDTGVHASSQIV 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 H ++ A +N LP DI ++ + V DD HARF A +R Y Y I ++ Sbjct: 62 HLDSPKEIDA-ALIFRINGYLPKDICIKSARLVQDDAHARFDALSRAYVYRITL--VKNP 118 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 +FY P++ +RM++AA LL DF SF V + H R+G + Sbjct: 119 FEIGLAYYFYPPIEIDRMNKAAAILLQYEDFESFSKVHTDVTNFNCTIFHAYWERNGDML 178 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 +KAN F+ MVR +VG+++EVG +++ AKDR A +A E LYL V Sbjct: 179 YFHVKANRFLRGMVRTLVGTMLEVGKGRMSLDDFVQIILAKDRKRAGISAPPEALYLSEV 238 Query: 251 DYPDR 255 +YP Sbjct: 239 EYPAE 243 >UniRef50_D1B5U1 Pseudouridylate synthase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B5U1_THEAS Length = 251 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 87/251 (34%), Positives = 126/251 (50%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 +++ A + Y GS + G+QRQ + +VQ LE++LS +A E +T AGRTDAGVH GQ Sbjct: 1 MFRYAAQVSYVGSCFAGFQRQPNLVTVQGALEESLSALAGEGVTCTGAGRTDAGVHARGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 VVHF+ + L + A LP + V + VP DFHARF A R YRY+++N R Sbjct: 61 VVHFDMPSRWDLERLRLAIRARLPRGLEVIRLAEVPGDFHARFDARWREYRYLVWNARWC 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + V LD + A LG DF +F + R +M +V R G Sbjct: 121 YPHMEPYVWPVRRHLDLGVLRELAGMCLGRRDFGAFCRSADRPDDSVRTMMRCSVRRFGH 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 +V +A+ F+ +M+R +VG+++EV A A LL R+ A T +GL+ Sbjct: 181 LLVFTFRADGFLTNMIRILVGTMLEVEAGRMSRERFASLLEGGHRSRAGRTCPPQGLFFW 240 Query: 249 AVDYPDRYDLP 259 V Y P Sbjct: 241 RVGYDPSPWGP 251 >UniRef50_D0RR37 Pseudouridylate synthase n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RR37_9RICK Length = 245 Score = 274 bits (701), Expect = 2e-72, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 135/245 (55%), Gaps = 1/245 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 +++ +EY+G+ + GWQ Q +VQ+ +EK+ ++ +F +GRTD+GVH TGQ Sbjct: 1 MHRYKAVVEYNGTDFEGWQSQPSGNTVQQIIEKSFLEIQLNKTKIFGSGRTDSGVHATGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPG-DIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 V HF+ LG+N L +I+V + ++F +R A R Y Y I N Sbjct: 61 VFHFDYEDKLDCKKILLGLNHFLKKKNISVLSLDFTNNNFDSRRDAKLRTYTYKILNRIA 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 P +L V H + LD + M +A+Q LG +DFT+FRA C++ +P R +++ + ++ Sbjct: 121 SPVILENQVWHVIKNLDFKLMQKASQIFLGSHDFTTFRASSCEATSPIREIIYSELKKNN 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 ++ +K+ +F+ H VR++VG++ VG + E L +K+R A A A GLYL Sbjct: 181 DQIIYIVKSRSFLQHQVRSMVGAIKFVGEKKWSLKDLDEALKSKNRNNCATPAPACGLYL 240 Query: 248 VAVDY 252 V+Y Sbjct: 241 ENVEY 245 >UniRef50_A8S765 Pseudouridylate synthase n=4 Tax=Ruminococcaceae RepID=A8S765_9FIRM Length = 254 Score = 274 bits (701), Expect = 2e-72, Method: Composition-based stats. Identities = 86/250 (34%), Positives = 128/250 (51%), Gaps = 3/250 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 L + YDG+ Y G+Q Q RSV + AL V + RTDAGVH G + Sbjct: 2 NFLLTLAYDGTNYCGFQVQPNGRSVAATFQDALEAVLGSRPDIKGCSRTDAGVHALGFRL 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 +F L +N +LP DI V +TVP+DFHAR++A + Y Y I+NH + Sbjct: 62 NFHADTRIPPQKLPLALNQHLPPDIRVLAAQTVPEDFHARYAAHTKTYLYRIHNHPIDSP 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDF---TSFRAVQCQSRTPWRNVMHINVTRHG 187 + T LD M AAQ +G +DF + + R + +VTR G Sbjct: 122 FDAAYYTRVPRRLDEAAMQAAAQQFVGTHDFLALCAAGSSAAAHGDTVRTITDCHVTRRG 181 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 V +++ A+ ++++MVR + G+L EVGA + I +LA++DR+ A T A+GL+L Sbjct: 182 DEVDIEVTADGYLYNMVRILAGTLCEVGAGRLRAADIPAILASRDRSRAGPTLPAKGLFL 241 Query: 248 VAVDYPDRYD 257 VDYP+R + Sbjct: 242 KCVDYPERKE 251 >UniRef50_Q28LN3 tRNA pseudouridine synthase A n=16 Tax=Rhodobacterales RepID=TRUA_JANSC Length = 261 Score = 273 bits (700), Expect = 3e-72, Method: Composition-based stats. Identities = 89/252 (35%), Positives = 126/252 (50%), Gaps = 5/252 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + A IEYDG + GWQRQ ++ SVQ +E AL+++ + T+ AGRTD GVH GQ Sbjct: 1 MPRYAFRIEYDGHPFKGWQRQTDLPSVQGAVEAALAKLEADVPTIAAAGRTDTGVHALGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANL-PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 V H + +N +L P +A+ DDFHARFSAT R Y Y + R Sbjct: 61 VAHADMQRDWDPFRLAEALNYHLKPAPVAITACARAHDDFHARFSATWRSYTYRMICRRA 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR-- 185 LD M A+ L+G++DFT+FRA CQ+ +P + + I V Sbjct: 121 PLVHARGHAWAVRGTLDVTAMAEGARHLIGKHDFTTFRATHCQALSPIKTMDEIRVEEVS 180 Query: 186 --HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 G + +KA +F+H+ VR+IVGSL VG+ + L A DR A + Sbjct: 181 LPAGTEIRFHLKAQSFLHNQVRSIVGSLEHVGSGAWAPDDMRRALEACDRAECGTVAPPD 240 Query: 244 GLYLVAVDYPDR 255 GLY+ V Y + Sbjct: 241 GLYMTGVGYDED 252 >UniRef50_A1A6J3 Pseudouridylate synthase n=14 Tax=Magnoliophyta RepID=A1A6J3_ARATH Length = 323 Score = 273 bits (699), Expect = 4e-72, Method: Composition-based stats. Identities = 87/265 (32%), Positives = 134/265 (50%), Gaps = 11/265 (4%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKAL---SQVANEPITVFCAGRTDAGVHGT 66 YK L I YDG+++ GWQ Q ++Q LEKAL +++ + + + AGRTDAGVH Sbjct: 41 YKWRLVIAYDGTRFAGWQYQESPPTIQSMLEKALIQITELGRKELQLIGAGRTDAGVHAW 100 Query: 67 GQVVHFETTALR-KDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 GQV HF T ++ +N LP DI VR + +FHARFSA+++ YRY IYN Sbjct: 101 GQVAHFVTPFNYTSLDSFHAALNGLLPKDIRVRELSAAVPEFHARFSASSKVYRYQIYND 160 Query: 126 RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQS--RTPWRNVMHINV 183 H L+A +M AA +G++DF++F + P + + +V Sbjct: 161 TFMDPFQRHWAYHCAYKLNASKMREAANLFVGKHDFSAFANATREDGVPDPLKTISRFDV 220 Query: 184 TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAA----T 239 + G + ++++ + F++ VRN+V L+++G + +L KDR + A Sbjct: 221 IQMGSLLQLEVEGSGFLYRQVRNMVALLIQIGKEALDSDIVPMILETKDRRVLAKYTSLP 280 Query: 240 AKAEGLYLVAVDY-PDRYDLPKPPM 263 A GL LV+V Y D LP Sbjct: 281 ASPHGLCLVSVKYKEDHLKLPLDCP 305 >UniRef50_Q1GE00 tRNA pseudouridine synthase A n=2 Tax=Ruegeria RepID=TRUA_SILST Length = 259 Score = 273 bits (698), Expect = 5e-72, Method: Composition-based stats. Identities = 90/252 (35%), Positives = 126/252 (50%), Gaps = 5/252 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + AL +EY G + GWQRQ + SVQ +E AL+++ T+ AGRTD GVHG GQ Sbjct: 1 MPRFALKVEYHGKPFAGWQRQKDQPSVQGAIEAALARIEPGEHTIAAAGRTDTGVHGLGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANL-PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 V H + + +N +L P +A+ V D++HARFSA R+Y + I R Sbjct: 61 VAHCDLEKNWDPFRLSEALNYHLKPAPVAIVDAALVDDEWHARFSAVERQYLFRILMRRA 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR-- 185 V LD M A LLG +DFT+FR+ CQ+ +P + + + V R Sbjct: 121 PATHDEGQVWQIKHDLDVAAMQAGANMLLGNHDFTTFRSSICQAASPVKTLDELRVERVQ 180 Query: 186 --HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 GP V ++A +F+H+ VR+ VG+L VG + L AKDR Sbjct: 181 GLSGPEVHFHVRARSFLHNQVRSFVGTLERVGTGAWSPEDVKHALEAKDRAACGPVCPGH 240 Query: 244 GLYLVAVDYPDR 255 GLYL V YPD Sbjct: 241 GLYLARVGYPDP 252 >UniRef50_C8X4C1 Pseudouridylate synthase n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X4C1_DESRD Length = 254 Score = 272 bits (697), Expect = 6e-72, Method: Composition-based stats. Identities = 86/248 (34%), Positives = 120/248 (48%), Gaps = 2/248 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + ++ L + Y G+ + GWQ Q R+VQ LE A + + P+ V AGRTD+GVH GQ Sbjct: 1 MPRLKLVVAYTGTHFAGWQLQPRDRTVQGCLEDAFATLCQHPLRVHGAGRTDSGVHAVGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V H + + W +NA LP DIAV V DDFHARFSA A+ Y Y I+ Sbjct: 61 VCHCDIPPEKNHIPWQKALNAILPKDIAVCEAAYVRDDFHARFSAQAKEYAYTIWTEPRY 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH-- 186 + + +D +M AA+ L G DF +F+ R V H+ Sbjct: 121 VLPQRRPLVWSVGRVDEHKMAVAARMLTGTFDFAAFQNTGTPVSHTVRTVYHLAPEPGAA 180 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G A+ F+ MVRNI+G L+ VG + + LL + R +A ATA +GL Sbjct: 181 GNESTWLFHADGFLKQMVRNIMGCLVAVGRNKISVDEVKILLEGQKREMAPATAPPQGLC 240 Query: 247 LVAVDYPD 254 L V Y + Sbjct: 241 LRKVKYGE 248 >UniRef50_Q6MDE3 tRNA pseudouridine synthase A 2 n=2 Tax=Parachlamydiaceae RepID=TRUA2_PARUW Length = 262 Score = 272 bits (697), Expect = 7e-72, Method: Composition-based stats. Identities = 82/251 (32%), Positives = 126/251 (50%), Gaps = 4/251 (1%) Query: 6 QPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHG 65 + I L I YDG Y+GWQ+ SV++ L+ +L Q+ I++ A RTD GVH Sbjct: 12 SKSMQNIKLKIAYDGQAYFGWQKTPAGPSVEKTLQNSLEQILQHTISLQAASRTDKGVHA 71 Query: 66 TGQVVHFETTALRKD-AAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYN 124 GQ+V+F TT D + L +N+ LP D+ + + +P FH + A+ Y Y I Sbjct: 72 RGQIVNFLTTKSITDLQKFILSLNSLLPTDLRILSAEKMPSTFHPTLNCVAKEYCYYICY 131 Query: 125 HRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFR--AVQCQSRTPWRNVMHIN 182 ++ H PL +M +A L+GE+DF++F R V I+ Sbjct: 132 DFVQLPEYRPYSWHCPFPLMLGKMTQAISVLIGEHDFSAFCNFKKNVNYTDYIRRVQAIH 191 Query: 183 VTR-HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAK 241 + + + + IK N F++ MVRNIVG+L+ +G I +L ++DR +A TA Sbjct: 192 LEVLNHKRLCIRIKGNHFLYKMVRNIVGTLIYIGKGKLMVEDIPSILQSQDRKMAGVTAP 251 Query: 242 AEGLYLVAVDY 252 A GL+L V Y Sbjct: 252 AHGLFLQTVLY 262 >UniRef50_B7AQ15 Pseudouridylate synthase n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7AQ15_9BACE Length = 256 Score = 272 bits (697), Expect = 8e-72, Method: Composition-based stats. Identities = 72/254 (28%), Positives = 118/254 (46%), Gaps = 10/254 (3%) Query: 9 VYKIALGIEYDGSKYYGWQR-QNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + L I+YDGS+Y GWQR + ++++ L A+ + E + +GRTDAGVH Sbjct: 1 MNNYRLTIQYDGSRYNGWQRLNDTDNTIEQILTDAIIKSTGEKTKLIGSGRTDAGVHALA 60 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 Q +F + +T +N+ LP DI V K VP DFH+R SAT + Y Y I Sbjct: 61 QTANFRCRQRLDEMHFTEELNSMLPEDIRVNLTKRVPPDFHSRHSATGKYYVYRIEISEP 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV---- 183 + D + M AAQ ++GE+DF +F + V IN+ Sbjct: 121 ANPFRRRYSWKPDGIPDVKLMCEAAQRMIGEHDFKAFCTDAKLMPYTVKTVYDINIHKDY 180 Query: 184 -----TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAA 238 + ++ + F+++MVR + G++++ G + I +L R+++ Sbjct: 181 SCLWNREEPGIIELEFHGSGFLYNMVRIMAGTIVDAGLGRFSPADIDAMLNGGTRSMSGQ 240 Query: 239 TAKAEGLYLVAVDY 252 A A GL+L +Y Sbjct: 241 LAPARGLFLKKAEY 254 >UniRef50_B2A4Q5 tRNA pseudouridine synthase A n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=TRUA_NATTJ Length = 253 Score = 271 bits (694), Expect = 1e-71, Method: Composition-based stats. Identities = 85/253 (33%), Positives = 130/253 (51%), Gaps = 8/253 (3%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQ-VANEPITVFCAGRTDAGVHGTG 67 + I L I YDGS Y+G+Q Q +VQEKLEKAL+ IT + A RTD+GVH G Sbjct: 1 MDNIKLTIAYDGSNYHGYQLQENAVTVQEKLEKALNTVYYPYKITPYSASRTDSGVHAKG 60 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QV +F L +N NLP DIA+ + V +F AR A + YRY +Y+ Sbjct: 61 QVANFFAPKQIPIHKIPLALNTNLPNDIAIINAEVVGSNFRARRDAIKKEYRYYVYHAPY 120 Query: 128 RPAVLSKGVTHFYEP-LDAERMHRAAQCLLGENDFTSFRAVQCQSRT--PWRNVMHINVT 184 H+ E LD ++ +AA +G++DF+ FRA+Q + + P + + ++ Sbjct: 121 MDPFWRNYALHYREQNLDYTKLQQAANDFIGKHDFSPFRAIQGSNPSIDPVKEIYEFDID 180 Query: 185 ----RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATA 240 G ++ + NAF++ MVR +VG+L+++G + + + L DR TA Sbjct: 181 VNAGEDGNLIIFKVIGNAFLYKMVRILVGTLLQIGNGKLEINAVKKALQTGDRLFVGPTA 240 Query: 241 KAEGLYLVAVDYP 253 +GL L + YP Sbjct: 241 SPQGLVLQQIWYP 253 >UniRef50_B5JG47 Pseudouridylate synthase n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JG47_9BACT Length = 243 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 122/243 (50%), Gaps = 2/243 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + YDG+ Y GWQ+Q+ SVQ+ +E+ L Q+ E + + +GRTDAGVH QV Sbjct: 2 RWKCSCSYDGTNYAGWQKQSGQISVQQVIEEVLEQLLKEKVAIHGSGRTDAGVHALEQVF 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+ + +++ LP +I V V ++FHARFSA ++RY+Y + Sbjct: 62 HFDYDWRHGGESLVKALHSKLPKEIRVESATEVGEEFHARFSAVSKRYQYRLALGE-ANP 120 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRA-VQCQSRTPWRNVMHINVTRHGPY 189 LD + A +G +DF +F A + + R ++ V++ Y Sbjct: 121 FQWAYCWPVSRKLDLNLVKEAMDRFVGTHDFGAFAANRGIEYESTERKMLATGVSQDTEY 180 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 V + +A+ F++ MVR++VG+++ VG S I LL + R+ A A+GL+L Sbjct: 181 VGLSFQADGFMYKMVRSLVGAVVNVGLGRMQVSEIERLLESAVRSPMVQAAPAKGLFLEK 240 Query: 250 VDY 252 V Y Sbjct: 241 VFY 243 >UniRef50_Q2LWJ8 Pseudouridylate synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LWJ8_SYNAS Length = 328 Score = 271 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 86/259 (33%), Positives = 122/259 (47%), Gaps = 4/259 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 K L +EYDG+ Y GWQ Q +S+Q L + + P+ + AGRTDAGVH QV Sbjct: 66 KYRLTLEYDGTGYSGWQMQKNAKSIQGTLLRVAEDLLGGPVDIQGAGRTDAGVHALAQVA 125 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 H ETT G+N LP I + V+ P FHAR SA R Y Y+I R A Sbjct: 126 HLETTRRMPPRKLLEGLNDALPSSINILRVEEAPPLFHARHSAQLRSYLYVI--SGHRTA 183 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWR-NVMHINVTRHGPY 189 + V + L+ ++M A++ G +DF+SF + + P R V + G Sbjct: 184 FGKRYVWWIRDHLELKKMQAASRLFAGFHDFSSFADKRMDKQAPTRVKVEATELHASGDL 243 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 + + + F+ MVR +VG ++EVG S + ++L + A TA GLYL Sbjct: 244 IFFRVTGSHFLWKMVRRMVGVMVEVGREKLDISDVRQMLKSYSPEPARLTAPPSGLYLER 303 Query: 250 VDYP-DRYDLPKPPMGPLF 267 V Y D P+ P F Sbjct: 304 VLYEGDSLQSLTLPLVPWF 322 >UniRef50_A5CET3 tRNA pseudouridine synthase A n=2 Tax=Orientia tsutsugamushi RepID=TRUA_ORITB Length = 284 Score = 270 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 95/284 (33%), Positives = 136/284 (47%), Gaps = 40/284 (14%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + +EYDG+ + GWQRQ S+Q+ LE +S + + + AGRTDAGVH GQ Sbjct: 1 MLRYKAIVEYDGTNFVGWQRQQNGLSIQQLLEDKISTFTKQTVNLIAAGRTDAGVHALGQ 60 Query: 69 VVHFET--------------------------------------TALRKDAAWTLGVNAN 90 VVHF+ VN Sbjct: 61 VVHFDLIAPNNSKDLACINKETDNKEVSKQNNTTTTIDSLKKMLPCRYNAYKLMSAVNYL 120 Query: 91 L-PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMH 149 L P I + + FHARFSA AR Y+Y I N + + PL+ M Sbjct: 121 LKPHRIILTSCEITTLQFHARFSAKARHYKYRIINRTVPSVIEQNRTWWIKPPLNVIDMI 180 Query: 150 RAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV-TRHGPYVVVDIKANAFVHHMVRNIV 208 A+Q L+G++DFTSFR+ CQ+++P + + I V T + P + + A +F+HHMVRNIV Sbjct: 181 DASQHLIGKHDFTSFRSSACQAKSPLKTLTKIEVDTTNYPEIQIYFSAPSFLHHMVRNIV 240 Query: 209 GSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 G+L+ +G + I +L AK+R +A TA + GLY V VDY Sbjct: 241 GTLVYIGLCKISPAAIKTILFAKNRAMAGPTAPSSGLYFVKVDY 284 >UniRef50_C1TLE9 Pseudouridylate synthase n=3 Tax=Synergistaceae RepID=C1TLE9_9BACT Length = 247 Score = 270 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 84/245 (34%), Positives = 122/245 (49%), Gaps = 1/245 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 K AL + Y+G+ + GWQ Q + +VQE LE+AL+ + P+ V AGRTD+GVH GQV Sbjct: 2 KYALELSYEGNHFSGWQLQPDSITVQEVLEEALTVLEGAPVKVSGAGRTDSGVHARGQVA 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 FE + TL VNANLP ++V VPDDF AR SA R Y Y +++ Sbjct: 62 SFELSKTWDPYRLTLAVNANLPEHVSVMRASAVPDDFDARRSALWREYAYFVWHGPSCFP 121 Query: 131 VLSKGVTHF-YEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 + V + D + + + L+GE+DF +F + R + + R G Sbjct: 122 HVRDMVWWRKRDDWDMDAVDGCCRALVGEHDFGAFCRLSECPENAVRTLFSVRHIRRGRL 181 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 + I+ F+ +MVR I+G++ V + W LL R +A TA A GL+ Sbjct: 182 SIFRIRGKGFLTNMVRIILGNIDAVATGKKRLEWFERLLLGGTRVDSATTAPASGLFFWR 241 Query: 250 VDYPD 254 V Y D Sbjct: 242 VGYDD 246 >UniRef50_D1AG36 Pseudouridylate synthase n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AG36_SEBTE Length = 244 Score = 270 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 74/244 (30%), Positives = 117/244 (47%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I + EYDGSK+ G+QRQ ++VQ +E+ + NE + + +GRTD GVH GQ Sbjct: 1 MKNIKIVYEYDGSKFSGFQRQLNKKTVQGSIEEVIKNYFNEEVNLLSSGRTDKGVHALGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V +F +N L G I V K DFHARFSA R Y YI+ Sbjct: 61 VSNFFMEKSISPDIIKGILNRALSGKIRVTDAKEADSDFHARFSAKTRTYLYIMKLKDEI 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 S V+ + E++ + + +G ++F SFR ++ P R + +I Sbjct: 121 TPFESSYVSALDGKIIPEKLQKIMEPFIGRHNFDSFRKKDKDNKNPEREINNIRCYEEDK 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + ++I+ +F+ M+R ++GS + V + +I + L D A +EGLYL Sbjct: 181 RLFIEIEGKSFLKTMIRIMIGSALAVYFEKRNPDYICDKLDNPDSDGEKILAPSEGLYLY 240 Query: 249 AVDY 252 V+Y Sbjct: 241 KVNY 244 >UniRef50_C0QUR7 Pseudouridylate synthase n=4 Tax=Hydrogenothermaceae RepID=C0QUR7_PERMH Length = 244 Score = 270 bits (691), Expect = 3e-71, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 123/247 (49%), Gaps = 3/247 (1%) Query: 6 QPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHG 65 + L I Y G Y+GWQ+Q + R+VQ LE+ L + E I + +GRTDAGVH Sbjct: 1 MKKNHNYKLVIMYIGKNYHGWQKQPKHRTVQGVLEEKLKVLFKEDIVLIGSGRTDAGVHA 60 Query: 66 TGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 GQV +F+T + RK +NA LP DI+V+ V+ VP FHARFSA + Y Y IY Sbjct: 61 LGQVANFKTISYRKPEEIYRYLNATLPRDISVKSVEEVPLSFHARFSAKGKTYIYRIYTK 120 Query: 126 RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR 185 L + + LD + M A + + D S R + +++T Sbjct: 121 P--DPFLHGFGWYISKKLDLKGMLEALEIVKKSKDLRSLSKKGEYLREDV-EIRELSMTY 177 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 G + + I A+ F+ +MVR IVG ++++G + ++ AKD T A EGL Sbjct: 178 DGKIIEIQITASHFLRYMVRKIVGHVVQIGLGSLSIQEFENIIEAKDPTKGLFIAPPEGL 237 Query: 246 YLVAVDY 252 +L V Y Sbjct: 238 FLKEVYY 244 >UniRef50_B5YDX5 tRNA pseudouridine synthase A n=2 Tax=Dictyoglomus RepID=TRUA_DICT6 Length = 245 Score = 269 bits (689), Expect = 5e-71, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 128/246 (52%), Gaps = 3/246 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + + Y G ++G+Q+Q R+VQ +LEK L + +E I V AGRTDAGVH GQ Sbjct: 1 MINWKVELSYIGKDFWGFQKQPGKRTVQGELEKVLKLLFDEDIKVIGAGRTDAGVHALGQ 60 Query: 69 VVHFET--TALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 VV+F+T + +N LPGDI ++ V+ V D+FHAR+SA R Y Y+IYN+ Sbjct: 61 VVNFKTKESKNFSCDKLYKVLNKLLPGDIKIKKVEIVDDNFHARYSAKRRWYIYVIYNNE 120 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 + L +PLD + ++ +A G +DF +F ++ T + Sbjct: 121 EKNLFLRDYCWWINKPLDKDLLNLSANLFKGIHDFRNFCVIENYDNTNV-EIYESFWYFK 179 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 ++ + A F+ MVR IVGS++EVG + + + L + ++ A A GLY Sbjct: 180 EDLLIYFVSAPFFLRKMVRFIVGSMVEVGLKKKELEDLEKYLKDRKEERFSSPAPASGLY 239 Query: 247 LVAVDY 252 L +DY Sbjct: 240 LFKIDY 245 >UniRef50_UPI0001BC54DA tRNA pseudouridine synthase A n=2 Tax=Fusobacterium RepID=UPI0001BC54DA Length = 251 Score = 269 bits (688), Expect = 8e-71, Method: Composition-based stats. Identities = 73/248 (29%), Positives = 123/248 (49%), Gaps = 7/248 (2%) Query: 11 KIALGIEYDGSKYYGWQRQNEV---RSVQEKLEKALSQVA---NEPITVFCAGRTDAGVH 64 + IEY+G++Y GWQR E +++Q K+E+ L+++ E ++V +GRTDAGVH Sbjct: 5 NLRFSIEYEGTRYLGWQRLGEKQREKTIQGKIEQVLARLFALNPEEVSVIASGRTDAGVH 64 Query: 65 GTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYN 124 Q+ + + + N LP DI + V + FH+RF A + Y Y I Sbjct: 65 AKEQIANVHLPSGKSPQEIEEYCNQYLPEDIRIFHAHFVEELFHSRFHAKTKEYHYEISL 124 Query: 125 HRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT 184 + + LD E+M ++Q LGE+DF +F +++ ++ R + I + Sbjct: 125 QK-PSVFHRNVTWYCPMQLDIEKMKESSQYFLGEHDFIAFSSLKKTKKSTIRRIDRIEIQ 183 Query: 185 RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 ++ N F+ +M+R +VG+L+EVG + + I + +K R A A A+G Sbjct: 184 ETESGLLFRFVGNGFLQNMIRILVGTLIEVGEGKKTKEDIISIFQSKTRQKAGFLAPAKG 243 Query: 245 LYLVAVDY 252 L L V Y Sbjct: 244 LTLYKVYY 251 >UniRef50_Q3Z951 Pseudouridylate synthase n=5 Tax=Dehalococcoides RepID=Q3Z951_DEHE1 Length = 248 Score = 269 bits (688), Expect = 8e-71, Method: Composition-based stats. Identities = 83/246 (33%), Positives = 129/246 (52%), Gaps = 1/246 (0%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 + L IEY+G++Y G+Q Q++ ++Q +LE A+ ++ +E V +GRTDAGVH QVV Sbjct: 1 MLLVIEYEGTRYSGFQVQDKGATIQGELETAIRKLTSEQTRVSGSGRTDAGVHAAYQVVS 60 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 + + + G+N LP DIAV+ V V + F R A +R Y Y I N + R + Sbjct: 61 YLSESSLGLDKIKGGLNFYLPPDIAVKEVHFVAESFDVRRRAISREYSYQILNSKTRSPL 120 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAV-QCQSRTPWRNVMHINVTRHGPYV 190 LD + M +A + L GE+DF +F + + + R V + + Sbjct: 121 ARLQAWQVPYKLDIKLMEQAFKMLEGEHDFIAFASSLGPEIKKTVRRVNWTRLGIREDRL 180 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + +I+AN+F+ H VRN +G+L+E+G S L AK LA A A GL LV V Sbjct: 181 IFNIEANSFLTHQVRNTIGTLVELGRGTMSMSEFEALFEAKTPGLAGPAAPACGLSLVRV 240 Query: 251 DYPDRY 256 +Y + + Sbjct: 241 NYREPF 246 >UniRef50_B0SC03 tRNA pseudouridine synthase A n=2 Tax=Leptospira biflexa serovar Patoc RepID=TRUA_LEPBA Length = 264 Score = 269 bits (688), Expect = 8e-71, Method: Composition-based stats. Identities = 84/255 (32%), Positives = 130/255 (50%), Gaps = 5/255 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEP--ITVFCAGRTDAGVHGT 66 + AL +EYDG+ + GWQ+Q + +VQ +E AL + + AGRTD GVH Sbjct: 1 MPNYALLVEYDGTHFNGWQKQKNLPTVQSSIESALGIILRRNPASRLSVAGRTDTGVHAL 60 Query: 67 GQVVHFETTALRKDAA-WTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 G V +F+T + + +NA P ++V+ V VP DFHARFS T R Y Y +Y Sbjct: 61 GMVCNFKTEHPIPNFHKLLVSLNALTPTGVSVKNVVEVPSDFHARFSCTGREYIYKLYYS 120 Query: 126 RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQS-RTPWRNVMHINVT 184 + + + +D ER+ + Q L+GE DF SF + + + R ++ I + Sbjct: 121 KYESSFVEGRAFWVKGHIDWERVKKQLQVLVGEKDFRSFTKAKSMAGKRAVREILAIQLE 180 Query: 185 R-HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 + + I+AN F+H+MVR VG+L+++G I +L K+RT A T + Sbjct: 181 NLSPEWYQIRIRANGFMHNMVRITVGTLLDIGKGRWESRSIDSILEEKNRTQAGVTLPPD 240 Query: 244 GLYLVAVDYPDRYDL 258 GLY V Y D ++ Sbjct: 241 GLYFVRAYYEDHPEI 255 >UniRef50_A6GZH6 Pseudouridylate synthase n=2 Tax=Bacteroidetes RepID=A6GZH6_FLAPJ Length = 250 Score = 268 bits (687), Expect = 9e-71, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 119/243 (48%), Gaps = 2/243 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + + Y+G++Y+GWQ Q SVQE L K S + E I + AGRTDAGVH Sbjct: 2 RYFIEFAYNGTQYHGWQYQPNATSVQETLNKVFSTLLQEKIDIMGAGRTDAGVHAKQMYG 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+T +A + N+ LP DI + + V + HARF AT+R Y Y I ++ Sbjct: 62 HFDTDISIDNAKFIHKANSFLPKDIVIFNIIPVHNQAHARFDATSRTYNYHISTYK--NV 119 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + + + +D M+ AA+ LL DF F T + + + Sbjct: 120 FTNNLAWYSSKKIDVIAMNEAAKVLLKFTDFKCFSKTNTDVNTYNCKITEAFWSIEKEQL 179 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + I A+ F+ +MVR IVG+L+ +G H +++ +++R A + A GL+L + Sbjct: 180 IFTITADRFLRNMVRAIVGTLINIGLHKITIENFIQIIESQNRENAGFSVPAHGLFLTNI 239 Query: 251 DYP 253 +YP Sbjct: 240 EYP 242 >UniRef50_Q7TU31 tRNA pseudouridine synthase A n=7 Tax=Prochlorococcus marinus RepID=TRUA_PROMP Length = 268 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 87/249 (34%), Positives = 132/249 (53%), Gaps = 1/249 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + ++AL I+YDGS + GWQRQ SVQE +E L +++N+ I F +GRTDAGVH +GQ Sbjct: 1 MKRVALVIQYDGSYFSGWQRQKNAISVQETIENCLFKISNQIIKTFASGRTDAGVHASGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V+HF+ L + +N+ LP I + V +HA +SA R YRY+I N+++ Sbjct: 61 VIHFDIDFLIPIDRYADVLNSRLPHTIRILESVEVKSSWHACYSAVYRHYRYVINNNKIP 120 Query: 129 PAVLSKGVTHFYEP-LDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 L+K H Y+ LD M A ++GE+DF +F+ T + I + R Sbjct: 121 NLFLNKWSWHRYQKYLDEVSMSIALDGMIGEHDFFAFQKSGSNRSTSVTTIKDIKLERTE 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 +++DIKA F++ MVR+IVG L+ VG + K + +A A+GL Sbjct: 181 DLILIDIKATGFLYGMVRSIVGQLVLVGEKKITPDIFKDRWVLKKKHDVRESAPAKGLCF 240 Query: 248 VAVDYPDRY 256 V Y + Sbjct: 241 VNSVYEENI 249 >UniRef50_C8P3N2 Pseudouridylate synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3N2_ERYRH Length = 245 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 74/245 (30%), Positives = 121/245 (49%), Gaps = 2/245 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + ++YDGS + GWQ+Q R VQ ++E L+++ EPI + +GRTDAGVH GQ Sbjct: 1 MMRFKATVQYDGSMFKGWQKQPFGRCVQTEIESVLTRINKEPIHISGSGRTDAGVHALGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V HF+ + +N LP DI + + V +FHARF ++ Y Y + Sbjct: 61 VFHFDNVVDMDEKQLFRALNTLLPNDIVITDIHPVEPNFHARFDVVSKTYEYRLNMGAY- 119 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQ-CQSRTPWRNVMHINVTRHG 187 V + + LD + + A + +G +DFTSF A + R + + ++ Sbjct: 120 NLFERNYVYQYNKALDLQAIRDAMESFVGTHDFTSFNATGLDEIENQVRTITNFDLIVSD 179 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 ++ I + F+ +MVR IV + + G+ IA++L A D+ + A GLYL Sbjct: 180 DHLNFVIIGDGFLRYMVRMIVATCVACGSGKCDAHEIAQMLKAADKNSISYNIDACGLYL 239 Query: 248 VAVDY 252 V+Y Sbjct: 240 KKVNY 244 >UniRef50_Q5HBA4 tRNA pseudouridine synthase A n=13 Tax=Rickettsiales RepID=TRUA_EHRRW Length = 246 Score = 268 bits (686), Expect = 1e-70, Method: Composition-based stats. Identities = 99/244 (40%), Positives = 143/244 (58%), Gaps = 2/244 (0%) Query: 11 KIALGIEYDGSKYYGWQRQN-EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 + + IEYDGS + GWQ+QN S+QE LEKA+ + + + + V+ AGRTDAGVH GQV Sbjct: 2 RYKIVIEYDGSDFIGWQKQNHNSNSIQEILEKAIFKFSKQHVIVYGAGRTDAGVHALGQV 61 Query: 70 VHFETTALRKDAAWTLGVNANL-PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 HF+ T + +N +L IAV V+ DFHARFSA R Y Y I N Sbjct: 62 AHFDLTTDFETYIVRNAINYHLISHAIAVVHVEKTDTDFHARFSAKRRYYLYKIVNRYSP 121 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + + PL+ E M +A + G ++F+SFRA CQS++P + V ++++T + P Sbjct: 122 LTIDRNRAWLVHTPLNVENMIKAVCYIKGNHNFSSFRAKCCQSKSPIKTVDNLSITYNHP 181 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 Y+ ++I A +F+HH VR IVG+L+E G P I ++ A +R+ A TA + GLY V Sbjct: 182 YIDINISAISFLHHQVRIIVGTLVECGKGYFPPEHIKTIMEANNRSYAGTTAPSYGLYFV 241 Query: 249 AVDY 252 VDY Sbjct: 242 KVDY 245 >UniRef50_D1PV12 Pseudouridylate synthase n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PV12_9BACT Length = 244 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 86/244 (35%), Positives = 124/244 (50%), Gaps = 3/244 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + + I +DG+ Y+GWQ Q SVQEKL++ L+ + +PI V AGRTDAGVH Sbjct: 2 RYFVWISFDGTAYHGWQIQPNGMSVQEKLQQGLTTLLRQPIEVTGAGRTDAGVHARRMAA 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+ +N LP DI+ V V D+ HARFSAT R YRY I+ R Sbjct: 62 HFDIDRELNCEQLAYRLNRILPRDISCEKVVRVNDEMHARFSATKRTYRYFIHTQ--RNP 119 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP-Y 189 LD E+M++AA LL +DF +F ++T V + GP Sbjct: 120 FERFFSVEMNWQLDFEQMNQAAAILLETDDFKAFCKAHADNKTTLCKVTTARWVQTGPAT 179 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 +I AN F+ +MVR +VG+L++VG HN +E++ R+ A + GL+L Sbjct: 180 YYFEISANRFLRNMVRAVVGTLIDVGRHNITLQQFSEIVEKGSRSDAGQSMPPHGLFLWD 239 Query: 250 VDYP 253 ++Y Sbjct: 240 IEYE 243 >UniRef50_O66953 tRNA pseudouridine synthase A n=2 Tax=Aquificaceae RepID=TRUA_AQUAE Length = 241 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 122/242 (50%), Gaps = 3/242 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + L + + G+ +YGWQ Q +R+VQ +++KALSQ+ E + V RTD+GVH Sbjct: 1 MPNYLLRLAFVGTNFYGWQVQPNLRTVQGEIQKALSQILCEDVKVTGCCRTDSGVHALDY 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 + +F+T + +N LP D+ V VK V ++F+AR+S + Y Y I+N +R Sbjct: 61 IANFKTQKDFPEEKLLKALNGILPKDVGVYAVKKVSEEFNARYSVKGKVYLYKIWNSEVR 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 L ++ E + + G +DF + + + R N+ +++ P Sbjct: 121 NPFLYPFSWQVKREINTEVLRNILKKFEGTHDFRALTKL-EEERNTVINLEEVSLNVEYP 179 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + + +KA+ F+ +MVR IVG+ +++ E + ELL K + TA +GL+L Sbjct: 180 LIEIRLKASHFLRYMVRRIVGTAVKISLGLYSEEVLEELLQGK--GNSPYTAPPQGLHLE 237 Query: 249 AV 250 V Sbjct: 238 KV 239 >UniRef50_Q1AU61 Pseudouridylate synthase n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AU61_RUBXD Length = 257 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 122/242 (50%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++A +EYDG+ + GW RQ R+V+ +L +AL V P+ + AGRTDAGVH +GQVV Sbjct: 2 RLAGLVEYDGAGFSGWARQPGRRTVEGELSRALETVLRHPVRLTAAGRTDAGVHASGQVV 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 F+ +A L D+A+R P F AR A +R Y Y I N +R Sbjct: 62 SFDARDGTDPGTLAYKASAVLSEDVALRRCVAAPPGFDARRDAASRSYEYRIVNAPVRSP 121 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + + H LD + AA+ +LG +DF +F + R V R G + Sbjct: 122 LRRRRAVHVGYRLDERLLGEAARRVLGVHDFRAFTPAKSHHVRFERAVSESRWERCGDLL 181 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 V I A+AF+++MVR +VG+++EV + + ELL R TA A GL LV V Sbjct: 182 VYRITADAFLYNMVRALVGTMLEVARGRRDLASFEELLGGARRAEGGPTAPARGLTLVRV 241 Query: 251 DY 252 Y Sbjct: 242 RY 243 >UniRef50_B0VGH4 Pseudouridylate synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGH4_9BACT Length = 274 Score = 266 bits (680), Expect = 6e-70, Method: Composition-based stats. Identities = 83/250 (33%), Positives = 127/250 (50%), Gaps = 4/250 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + + I YDG+ Y GWQ+Q ++QE +EK L A + ++ AGRTDAGVH GQ Sbjct: 3 MARYLIKICYDGTGYCGWQKQKNGLAIQEVMEKMLEIFAGKKTSLIAAGRTDAGVHSLGQ 62 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 HF+ + ++ L N LP I V + V +AR+ A R YRY + + + Sbjct: 63 YAHFDYSGSMQEKQLFLAFNRYLPDSIKVLEIMKVSPCLNARYQAYERSYRYRL--AKEK 120 Query: 129 PAVLSKGVTHFYE-PLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 F L+ E+M A Q LLG++DF++F + + HI+++ Sbjct: 121 TPFNRNYSGFFPHLHLNLEKMQSAVQYLLGKHDFSTFGKSNPEVPNRICELKHISISETE 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKD-RTLAAATAKAEGLY 246 Y V D A+ F+H+MVR IVG+L + + P + E+L + R TA A GLY Sbjct: 181 RYFVFDFTADRFLHNMVRRIVGTLANISHLHLPPETVLEILENRCPRQNLVITAPASGLY 240 Query: 247 LVAVDYPDRY 256 L+ V YP ++ Sbjct: 241 LMDVKYPAKF 250 >UniRef50_C2MC62 Pseudouridylate synthase n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MC62_9PORP Length = 262 Score = 265 bits (679), Expect = 9e-70, Method: Composition-based stats. Identities = 93/253 (36%), Positives = 129/253 (50%), Gaps = 8/253 (3%) Query: 8 PVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 P+ ++ L + YDG+ Y GWQ Q SVQ +LE+ALS + +PI+V AGRTDAGVH Sbjct: 4 PIQRVFLEVAYDGTNYCGWQVQPRGVSVQSELERALSMLFRQPISVTGAGRTDAGVHAYS 63 Query: 68 QVVHFETTALRKD-AAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 + H + A G+ L G I+VR V V HARF AT+RRY Y I Sbjct: 64 MMAHADLPIPHPPLAQIQRGLCGILRGGISVRSVTPVIPTAHARFDATSRRYHYYI--SA 121 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 D E M+ A + +GE+DFTSF + Q++ V + + Sbjct: 122 CSNPFWGDYCWERRTLPDMELMNEACRHFIGEHDFTSFSKLHTQTKHNRCTVYTAHWEQV 181 Query: 187 G-----PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAK 241 + ++ AN F+H MVR +VG+L+EVG + IAEL+ +DRTLA + A Sbjct: 182 EMPGLWDAMRYEVCANRFLHGMVRTMVGTLLEVGYGQRTPDSIAELIQREDRTLAGSAAP 241 Query: 242 AEGLYLVAVDYPD 254 A L+ V YPD Sbjct: 242 ARALFFVEATYPD 254 >UniRef50_A4EA88 Pseudouridylate synthase n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4EA88_9ACTN Length = 274 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 92/267 (34%), Positives = 123/267 (46%), Gaps = 13/267 (4%) Query: 1 MSDQQQPPVY-----KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFC 55 M+ + + + YDGS Y G+ Q +V +L +A+ + PI + C Sbjct: 1 MTAPSDFNLTPELDATLVFRVAYDGSSYSGFAEQPGQATVAGELRRAIETLLRRPIDLTC 60 Query: 56 AGRTDAGVHGTGQVVHF---ETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFS 112 AGRTDAGVH Q + + W ++A LP DIA+ V F ARF Sbjct: 61 AGRTDAGVHAVAQYISVPVTDAELALTRRRWLRAMDALLPKDIAINEVYRARKGFSARFD 120 Query: 113 ATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQ-S 171 A +R Y Y I + RP + V PLD E M A LLGE DF SF V Sbjct: 121 ARSRTYTYRIADRDARPVLSRGAVWWHRYPLDVEAMSAACPALLGEQDFKSFCKVASAVG 180 Query: 172 RTPWRNVMHINVTRH----GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAEL 227 + R VM + I+ NAF+H MVR IVG+L+E+G H + W+ E+ Sbjct: 181 KPTHRCVMRAEFGHEVAFGEDILTFTIEGNAFLHSMVRTIVGTLVEIGMHRRKPEWMREV 240 Query: 228 LAAKDRTLAAATAKAEGLYLVAVDYPD 254 + A DRT A TA A GL + VDY Sbjct: 241 IDACDRTAAGPTAPACGLTFMGVDYDP 267 >UniRef50_D0WG96 Pseudouridylate synthase n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WG96_9ACTN Length = 331 Score = 265 bits (677), Expect = 1e-69, Method: Composition-based stats. Identities = 103/266 (38%), Positives = 142/266 (53%), Gaps = 17/266 (6%) Query: 4 QQQPPVYKIALGIEYDGSKYYGWQRQN--EVRSVQEKLEKALSQVANEPITVFCAGRTDA 61 + +ALG+ YDG+ + G+ RQ V +VQ +LE+ LS + + CAGRTDA Sbjct: 66 ETSRLSRCVALGVAYDGAPFAGFARQAESHVTTVQGELERVLSVLYRRAVDTVCAGRTDA 125 Query: 62 GVHGTGQVVHFETTAL----RKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARR 117 GVH GQVV F+ T R +NA + I V + P F ARF AT+R Sbjct: 126 GVHALGQVVSFDLTEEEFASRPLRTLMKSMNALVDERITVTCAEERPAGFSARFDATSRE 185 Query: 118 YRYIIYNHRLRPAVLSKGVTHFYE-PLDAERMHRAAQCLLGENDFTSFRAVQC------Q 170 YRY I RP ++++ V H PLD + M+ AA+ L+GE+DF SF + Sbjct: 186 YRYFIATGNARPVLIARSVWHLRGAPLDVDAMNTAARFLVGEHDFKSFCVASSALHLEGE 245 Query: 171 SRTPWRNVMHINVTRHG----PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAE 226 R+ R V+ +V P V V I NAF+H M+R IVG+L+ VG + SW+A+ Sbjct: 246 GRSTCRRVIEADVRSTHVMGTPVVEVRIVGNAFLHSMIRIIVGTLVAVGQGRRDASWVAD 305 Query: 227 LLAAKDRTLAAATAKAEGLYLVAVDY 252 +LAA+DRT A TA A GL +V Y Sbjct: 306 VLAARDRTAAGETAPACGLTFWSVRY 331 >UniRef50_B2UNB6 tRNA pseudouridine synthase A n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=TRUA_AKKM8 Length = 265 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 76/256 (29%), Positives = 112/256 (43%), Gaps = 9/256 (3%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + +I YDG Y GWQ Q R+VQ+ LE+A S + + +GRTDAGVH GQ Sbjct: 1 MTRIRFTAAYDGRPYLGWQSQPGGRTVQDVLERAFSGLFGTTCRIHGSGRTDAGVHALGQ 60 Query: 69 VVHFETT--ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 V H + W +N LP I + + VP FHARFSAT + YRY I Sbjct: 61 VFHADAPDTHRIPADKWPAALNTRLPRTIRITHAEYVPPGFHARFSATGKTYRYCISRAP 120 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPW------RNVMH 180 + + H + + +A G +DFT+F A++ P R + Sbjct: 121 ILNPFDAGLAWHRPLAWSVDILEQAVHLFRGTHDFTAFAALRGNEPRPIPEGYFRRTITQ 180 Query: 181 INVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAA-T 239 V + G +V + F++ MVR + G+ E +A L+ A + Sbjct: 181 TQVAQTGEHVFITFTGTGFLYKMVRLMTGAAHEAARGKITLEELARLINAPLPDDKSPFC 240 Query: 240 AKAEGLYLVAVDYPDR 255 A +GL L+ V YP+ Sbjct: 241 APPDGLTLMRVHYPEE 256 >UniRef50_Q01WL4 tRNA pseudouridine synthase A n=3 Tax=Acidobacteria RepID=TRUA_SOLUE Length = 240 Score = 263 bits (674), Expect = 3e-69, Method: Composition-based stats. Identities = 83/247 (33%), Positives = 125/247 (50%), Gaps = 10/247 (4%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + +I + + YDG ++GWQ Q + ++Q LE+ + + +P+ V +GRTDAGVH Q Sbjct: 1 MRRIRIYLAYDGGPFHGWQVQPGLATIQGILEEIVGGMEGKPVHVAGSGRTDAGVHALAQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V F VN LP I + + V DFH RF A A+ Y Y ++ + Sbjct: 61 VAAFSIENPIPVENLRRAVNRLLPPAIRILCAEEVQADFHPRFDAVAKTYEYRMFRDEVC 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAV---QCQSRTPWRNVMHINVTR 185 V H PLD RM A+ GE+DFT F A + ++ R + + R Sbjct: 121 SPFEWPYVYHHPYPLDEARMATLARAFEGEHDFTPFAASDARDAEGKSKVRTIFSSTLDR 180 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 +V ++ + F+ HMVRNIVG+L+E G N IA+L + R+ A TA A+GL Sbjct: 181 TPQRLVYRVRGSGFLKHMVRNIVGTLIEAGRGN-----IADLNSLPARSGA--TAPAKGL 233 Query: 246 YLVAVDY 252 + V+V+Y Sbjct: 234 FQVSVEY 240 >UniRef50_Q2JFE6 tRNA pseudouridine synthase A n=44 Tax=Actinomycetales RepID=TRUA_FRASC Length = 274 Score = 263 bits (674), Expect = 3e-69, Method: Composition-based stats. Identities = 91/253 (35%), Positives = 129/253 (50%), Gaps = 4/253 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEP-ITVFCAGRTDAGVHGTGQV 69 ++ L + YDG+ + GW RQ R+VQ +E AL +VA P + + AGRTD+GVH GQV Sbjct: 7 RLRLDLSYDGTPFAGWARQPGQRTVQGDVEDALMRVARLPAVRLTVAGRTDSGVHAVGQV 66 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL-R 128 H + +N L + + + P F ARFSA +RRY Y I + Sbjct: 67 AHVDLPDDVPLGGLARRLNGVLDRAVRIIGLAPAPPGFDARFSALSRRYVYRITDAPYGA 126 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + + PLD M AA L+GE+DF +F + + T R ++ ++V R Sbjct: 127 EPLRRFDTLAWPRPLDVPAMAAAALFLVGEHDFAAFCRRR-EGATTVRTLLRLDVLRRPE 185 Query: 189 YVVV-DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 VVV D++A+AF H MVR +VG+L+ VG +P W A +L R A A A GL L Sbjct: 186 GVVVADVEADAFCHSMVRALVGALLAVGEGRKPPQWPAAVLHRGVRDPAVTVAPAHGLTL 245 Query: 248 VAVDYPDRYDLPK 260 V V YP +L Sbjct: 246 VDVRYPPDPELAA 258 >UniRef50_C7RE26 Pseudouridylate synthase n=3 Tax=Anaerococcus RepID=C7RE26_ANAPD Length = 246 Score = 263 bits (674), Expect = 3e-69, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 118/245 (48%), Gaps = 1/245 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + L YDG+ + G+Q Q + RSV+E+L A+ +V E + GRTD+GVH Sbjct: 2 IRNVLLETAYDGTNFAGFQYQKDERSVEEELRNAIRKVTGEDNRIVSCGRTDSGVHARSH 61 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V+F T + A++ + +LP DI K V DFHARFS ++ Y+Y+IY RL Sbjct: 62 FVNFLTASNISPKAFSFHIQPHLPDDILALSSKEVSLDFHARFSCKSKLYKYVIYRGRLM 121 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSR-TPWRNVMHINVTRHG 187 V PLD +R+ + + L GE+DF F + + R + G Sbjct: 122 YPVFRNYKEEISYPLDLKRLDQGLKILEGEHDFRLFMREDKKLKINTVRKIDEAYFEEEG 181 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + + K +F+H+ VR +VGSL+E+ + + A A+GLYL Sbjct: 182 DDLAIYFKGESFLHNQVRIMVGSLIELSRGRLSLDDYRKFFDKDNNKRANPALGAQGLYL 241 Query: 248 VAVDY 252 V++ Sbjct: 242 RRVEF 246 >UniRef50_A4CM73 Pseudouridylate synthase n=2 Tax=Flavobacteriales RepID=A4CM73_9FLAO Length = 253 Score = 262 bits (671), Expect = 8e-69, Method: Composition-based stats. Identities = 83/245 (33%), Positives = 124/245 (50%), Gaps = 4/245 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN-EPITVFCAGRTDAGVHGTGQV 69 + L I Y G+ Y+GWQ+Q ++QE LE + ++ PI + AGRTDAGVH Sbjct: 2 RFFLEISYLGTAYHGWQKQPNALAIQEILEDRMGKLLGNGPIDLVGAGRTDAGVHARQLF 61 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 HF+ A + + +NA LP DIAV+ V V + HARF AT R Y Y + R + Sbjct: 62 AHFDRDAALP-SGFVHRLNAFLPADIAVKGVYEVAPNAHARFDATGRTYEYHLV--REKD 118 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 F LD M+RAA +LG +F +F + +T ++ Sbjct: 119 PFREGLAYQFQGELDFGAMNRAAASMLGYGNFKAFSRSKSDVKTYNCDLREARWEEGDGV 178 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 V I A+ F+ +MVR +VG+L+EVG + ++ ++DR+ A + A+GLYL Sbjct: 179 WVFTISADRFLRNMVRAVVGTLLEVGKGRLDAEGVKTIIKSQDRSEAGVSVPAKGLYLTR 238 Query: 250 VDYPD 254 + YPD Sbjct: 239 ITYPD 243 >UniRef50_C4F9Q5 Pseudouridylate synthase n=3 Tax=Coriobacteriaceae RepID=C4F9Q5_9ACTN Length = 292 Score = 262 bits (670), Expect = 9e-69, Method: Composition-based stats. Identities = 93/253 (36%), Positives = 127/253 (50%), Gaps = 9/253 (3%) Query: 11 KIALGIEYDGSKYYGWQRQN-EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 + + YDG+ + G+ Q +R+V ++ +AL + P+ + CAGRTDAGVH Q Sbjct: 33 TLVFRLGYDGAAFSGFAEQPEGLRTVAGEVRRALETILRRPVDLTCAGRTDAGVHAVSQY 92 Query: 70 VHFET---TALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 V A W + A LP DIA+ V F ARF A +R Y Y I Sbjct: 93 VSIPAHADELAITHARWMRAMAALLPSDIALNAVYHARPGFSARFDARSRTYTYRIVTGD 152 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQ-SRTPWRNVMHINVTR 185 RP + PLD + M RAA CL+GE+DF SF + RNV+ ++ R Sbjct: 153 ARPLLTRSVTWWHRLPLDMDAMERAAACLVGEHDFKSFCKTSSAIDKPTCRNVIAVSFER 212 Query: 186 ----HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAK 241 ++ I NAF+H MVR IVGSL+EVGA + E W+++ LAA DR A TA Sbjct: 213 ASALGEEHIAFTITGNAFLHSMVRTIVGSLVEVGAGRRDERWLSDALAACDRRAAGPTAP 272 Query: 242 AEGLYLVAVDYPD 254 A GL + V Y + Sbjct: 273 ARGLCFMDVAYDE 285 >UniRef50_C8W7W7 Pseudouridylate synthase n=4 Tax=Coriobacteriaceae RepID=C8W7W7_ATOPD Length = 294 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 94/258 (36%), Positives = 131/258 (50%), Gaps = 8/258 (3%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + + + Y G+ + G+ Q RSV L +AL V + + CAGRTDAGVH Q V Sbjct: 37 TLVIKLGYRGAAFCGFAEQPTQRSVAGDLRRALETVLRREVELTCAGRTDAGVHAQVQYV 96 Query: 71 HF---ETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 + + A DI++R + P F ARF A AR YRY I Sbjct: 97 SLPVYDADLSFSGEKLVRSLTALTDDDISIRQLFRAPQGFSARFDAQARSYRYRICADSA 156 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAV-QCQSRTPWRNVMHINVTRH 186 RP + V + LDA+ M +AAQ L+GE+DF SF + + R V ++V Sbjct: 157 RPILGWDHVWWYNGHLDADLMDKAAQALVGEHDFKSFCKAISAEGKPTHRFVERLSVEEI 216 Query: 187 GP----YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 + VDI NAF+H+MVR IVG+L+E+G ++P WI E+LAAK+R A + A A Sbjct: 217 EEAGEKLIAVDITGNAFLHNMVRTIVGTLVEIGRGHRPVEWIDEVLAAKNRIAAGSCAPA 276 Query: 243 EGLYLVAVDYPDRYDLPK 260 +GL V V YP+ P Sbjct: 277 QGLTFVNVRYPEGILQPW 294 >UniRef50_C7ND49 Pseudouridylate synthase n=3 Tax=Leptotrichia RepID=C7ND49_LEPBD Length = 251 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 71/249 (28%), Positives = 121/249 (48%), Gaps = 4/249 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + +YDGSK+ G+QRQ +++VQ ++EK +S+ + I + +GRTD GVH Q Sbjct: 3 KRNVKIVYQYDGSKFCGFQRQMGIKTVQGEIEKVISKTFFQNINMISSGRTDKGVHAIEQ 62 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V +F A +N L G+I + ++ + + F++RF A R Y YI+ Sbjct: 63 VSNFMIDQNIPLNAIKRQLNKRLKGEIKILDIEEMDEKFNSRFDAQNRTYLYIMKVEDEI 122 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + +T E +D ++ + +G++DF+SF R P R + IN Sbjct: 123 TPFETNYITGIKEMIDIDKFQKIMLEFIGKHDFSSFMKKDKAYRNPVREIFFINCYYDKN 182 Query: 189 ----YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 + ++I N F+ MVR ++GS + V + +++I + L D A +EG Sbjct: 183 GKEKQINIEICGNGFLKTMVRIMIGSALAVYFGKEEKNYIKKKLENPDADGKKILAGSEG 242 Query: 245 LYLVAVDYP 253 LYL V Y Sbjct: 243 LYLYKVSYE 251 >UniRef50_D2MMG6 tRNA pseudouridine synthase A n=1 Tax=Bulleidia extructa W1219 RepID=D2MMG6_9FIRM Length = 320 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 72/245 (29%), Positives = 112/245 (45%), Gaps = 2/245 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + Y G+ Y GWQ Q + S+QEK+E LSQ+ E TV +GRTDA V+ GQ Sbjct: 1 MRYFKAIVAYVGANYCGWQSQKKGNSIQEKIEAVLSQINQEKTTVIASGRTDAKVNALGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 F++ W ++ LP DI V+ V+ V + FHARF + Y Y I+ Sbjct: 61 CFQFQSEKNIDSYRWLGIFHSFLPKDIYVKQVEEVDETFHARFLVEQKTYLYRIHLGDY- 119 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSF-RAVQCQSRTPWRNVMHINVTRHG 187 E L+ + M + + G + F SF + + R + + + Sbjct: 120 DVFQKDDSFQLREDLNLKEMRKCWKLFEGTHSFLSFNTSSLSEYPNQVRTIFRTELRKIS 179 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 ++ ++I N ++ HMVR +VG+ +EVG + +L R A A A+GL L Sbjct: 180 DHLELEISGNGYLRHMVRILVGTCLEVGRGKLTIEEVQRMLNDPSRHYATKKAPAQGLCL 239 Query: 248 VAVDY 252 V Y Sbjct: 240 KEVSY 244 >UniRef50_C0VZ39 Pseudouridylate synthase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VZ39_9ACTO Length = 302 Score = 259 bits (663), Expect = 6e-68, Method: Composition-based stats. Identities = 92/265 (34%), Positives = 136/265 (51%), Gaps = 22/265 (8%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + L Y G+ + GW +Q +R+VQ LE+AL+ V EP+ + AGRTDAGVH + Q Sbjct: 2 RFRLECAYRGTFFRGWAKQPGLRTVQGTLEEALALVLREPVELTVAGRTDAGVHASAQTA 61 Query: 71 HFET------------TALRKDAAWTLGVNANLP---------GDIAVRWVKTVPDDFHA 109 HF+ + A T +N + D+ V ++ V D F A Sbjct: 62 HFDVCADRLMQVTKQAEVVHACEALTRRLNRLIRRADSNASGLPDVVVYSIEPVADVFDA 121 Query: 110 RFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQC 169 RF+A R Y Y + + R + ++ V EPL M AA+ L+GE+DF SF + Sbjct: 122 RFAALRRHYVYRVADVAGRNPLYAESVWWVEEPLQIHLMREAARALVGEHDFLSFCKPR- 180 Query: 170 QSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLA 229 + + R + +++ + V + A+AF H MVR+IVG+L+EVG +P +WIA+L+A Sbjct: 181 EGASTIRTLEAVDLVETDTGLEVRLSADAFCHSMVRSIVGALVEVGRGRKPVTWIADLVA 240 Query: 230 AKDRTLAAATAKAEGLYLVAVDYPD 254 R AA A GL L AVDYP Sbjct: 241 FPSREQAAPLAPPHGLTLRAVDYPP 265 >UniRef50_C5RIE6 Pseudouridylate synthase n=1 Tax=Clostridium cellulovorans 743B RepID=C5RIE6_CLOCL Length = 245 Score = 259 bits (662), Expect = 8e-68, Method: Composition-based stats. Identities = 79/245 (32%), Positives = 134/245 (54%), Gaps = 1/245 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVR-SVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + + L IE+DGS+Y GWQ Q + +VQ K+E LS++ E I V R D G H G Sbjct: 1 MRNLKLTIEFDGSRYKGWQNQKDKEQTVQGKIETVLSKMTGEEIEVIGCERIDTGAHADG 60 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 + +F+T A ++ + LP DI V++++ V + FHAR++A A+ Y Y+I N+ L Sbjct: 61 YIANFKTNCELSCTAISIYLYEFLPEDILVKFIEEVDERFHARYNAKAKVYEYVINNNNL 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 R K H L+ E M +AA+ G++DF +F ++ +++ R V I + + Sbjct: 121 RNVFNRKYSYHIDIDLNIEEMLKAAEAFKGKHDFKAFTNLKSSAKSTVRTVEDILIKKDN 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + +++ A+ F+ +M R IVG+L+EVG N + + ++L + A+A+ L+L Sbjct: 181 GLIKIELIADDFLLNMERIIVGTLIEVGKGNVKATNVFKMLKDGKKIETIPMAQAKALFL 240 Query: 248 VAVDY 252 V Y Sbjct: 241 KKVIY 245 >UniRef50_Q30XU3 tRNA pseudouridine synthase A n=5 Tax=Desulfovibrionales RepID=TRUA_DESDG Length = 278 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 90/276 (32%), Positives = 127/276 (46%), Gaps = 25/276 (9%) Query: 9 VYKIALGIEYDGSKYYGWQRQ---------NEVRSVQEKLEKALSQVANEPITVFCAGRT 59 + ++ L I Y G++Y GWQ Q + +VQ+ +E A + + V AGRT Sbjct: 1 MARLKLIIAYAGTRYAGWQIQCLPAGRPHAVQQPTVQQAVEDAAKAILGSAVRVHGAGRT 60 Query: 60 DAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYR 119 D+GVH GQV H + + W +NA LP DI+V VPD FHARF A +RY Sbjct: 61 DSGVHAEGQVAHLDIPDAKAAVDWRRALNAKLPEDISVLQAAVVPDGFHARFDAVKKRYT 120 Query: 120 YIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVM 179 Y I+ R + H PLD M AA + G +DF SF+ + T R V Sbjct: 121 YRIWLTRAFVLPQRRPFVHMTGPLDIAAMDAAAAFMTGTHDFASFQNAGTELATTVRTVY 180 Query: 180 HI---------NVTRHGP-------YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESW 223 I + R + +A+ F+ MVRN++G L+ G Sbjct: 181 SITRTPGLAPDDFPRSHDTTPRAPLELAWHFEADGFLKQMVRNMMGLLLWTGTGRCAPED 240 Query: 224 IAELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDLP 259 + ++AA+DR L+A TA A GL + V YPD P Sbjct: 241 VPAIIAARDRRLSAPTAPACGLTMERVFYPDECCPP 276 >UniRef50_B5HPZ6 Pseudouridylate synthase n=1 Tax=Streptomyces sviceus ATCC 29083 RepID=B5HPZ6_9ACTO Length = 289 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 88/268 (32%), Positives = 132/268 (49%), Gaps = 10/268 (3%) Query: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVR-SVQEKLEKALSQVANEP---ITVFCA 56 MSD+ QP ++ L + YDGS + GW +Q R +VQ ++E AL V + A Sbjct: 1 MSDEVQPGDVRVRLDLSYDGSDFSGWAKQAGGRRTVQGEIEDALRTVTRSKDVTYELTVA 60 Query: 57 GRTDAGVHGTGQVVHFETTALRKDAA---WTLGVNANLPGDIAVRWVKTVPDDFHARFSA 113 GRTDAGVH GQV H + + LP D+ V ++ P F+ARF+A Sbjct: 61 GRTDAGVHARGQVAHVDLPEGLWAEHRDKLLKRLAGRLPKDVRVWSLREAPAGFNARFAA 120 Query: 114 TARRYRYIIYNHRLR-PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSR 172 RRY Y + + +L V LD M AA+ L+GE+DF ++ + + Sbjct: 121 LWRRYVYRVGDQPGGVDPLLRNHVLWHDWELDVAVMDAAAKSLVGEHDFAAYAKRR-EGA 179 Query: 173 TPWRNVMHINVTRHGPYVV-VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAK 231 T R ++ V R VV ++++A+AF H+ VR++VG+L+ VG ++ W ++L A Sbjct: 180 TTIREILDFGVRRRADGVVEIEVRADAFCHNQVRSMVGALLFVGDGHRGVEWPRKVLDAG 239 Query: 232 DRTLAAATAKAEGLYLVAVDYPDRYDLP 259 R A + GL L V YP L Sbjct: 240 VRDSAVHVVRPHGLTLEEVAYPADDQLA 267 >UniRef50_UPI00016BFD9D tRNA pseudouridine synthase A n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016BFD9D Length = 259 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 75/252 (29%), Positives = 126/252 (50%), Gaps = 14/252 (5%) Query: 13 ALGIEYDGSKYYGWQRQNEVR-------SVQEKLEKALSQVANEPITVFCAGRTDAGVHG 65 + Y G++Y G+ RQ + ++ +LE A+ ++ + + + AGRTDAGVH Sbjct: 10 KFIVAYKGTRYNGFARQAGDKVVGSGIQTISAELELAIEKITQQQVRIVGAGRTDAGVHA 69 Query: 66 TGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 QV ++ L +N LP DI ++ ++ + FH FS + YRY I N Sbjct: 70 LAQVCIANIDTQIGNSGLLLALNNKLPVDIVIKSIEDAEEGFHPTFSGKRKMYRYQILNT 129 Query: 126 RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQ----SRTPWRNVMHI 181 + +++ V HF LD E M AA L+G +DF +F A + + R + I Sbjct: 130 TVSCPFVAEFVYHFPHKLDVEEMKVAAXELVGTHDFRAFCAAKSNVLKKGSSTVRTIFDI 189 Query: 182 NVTRHGPYVV-VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATA 240 V R ++ +D+ + F+++MVR I G+L++ G IA++L ++R A TA Sbjct: 190 VVARGDDEIIKIDVTGDGFLYNMVRIIAGTLIDKGLGRGMP--IAKILEMRERKNAGKTA 247 Query: 241 KAEGLYLVAVDY 252 A GL ++ V+Y Sbjct: 248 PASGLTMIGVEY 259 >UniRef50_Q72DL8 tRNA pseudouridine synthase A n=4 Tax=Desulfovibrio vulgaris RepID=TRUA_DESVH Length = 297 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 92/291 (31%), Positives = 128/291 (43%), Gaps = 46/291 (15%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEV-----RSVQEKLEKALSQVANEPITVFCAGRTDAGV 63 + ++ L I Y G+ +GWQ Q R+VQ LE +S++A E + + AGRTDAGV Sbjct: 1 MARLRLTIAYKGTDLHGWQVQEHATRPRPRTVQGVLEPIVSRMAGEQVRLHAAGRTDAGV 60 Query: 64 HGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIY 123 H GQV H + + W +NA LP DI + V+ DDFHARF A +RY Y ++ Sbjct: 61 HADGQVAHVDIPDHKLGVDWQKAINAQLPDDICILDVRRAADDFHARFDALGKRYTYRLW 120 Query: 124 -NHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHIN 182 R P L V PLD M RAA+ L G +DF +F+ + R V I Sbjct: 121 LTRRFIPPKLHGQVWA-TGPLDVYAMDRAARHLAGTHDFAAFQNQGTDVTSTVRTVHAIR 179 Query: 183 ---------------------------------------VTRHGPYVVVDIKANAFVHHM 203 + G +V + + F+ M Sbjct: 180 RCPSGTLPAGALLTCSEPYTSWRCTGTHPDQPPATAGHPLAGIGLELVWSFEGDGFLKQM 239 Query: 204 VRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPD 254 VRN++G L+ VG + ++A DR+ A ATA A GL L V YP Sbjct: 240 VRNMMGLLVAVGRGALAADDVPGIMATLDRSRAPATAPACGLTLSEVYYPP 290 >UniRef50_C7HSK8 Pseudouridylate synthase n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HSK8_9FIRM Length = 252 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 71/245 (28%), Positives = 119/245 (48%), Gaps = 1/245 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I L I+YDGS + G+Q Q R+VQ++LE A+ +V E + +GRTD+GVH Sbjct: 3 IQNILLKIQYDGSLFEGFQIQKNKRTVQKELEDAIRKVTGEENRIIASGRTDSGVHANEM 62 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 ++F T + + + + LP DI K V +FHARFS + Y+Y+I ++ Sbjct: 63 YINFLTAKIIRADKFHFHLKKYLPDDILALESKKVDKNFHARFSVKTKTYKYVISLDKIL 122 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFR-AVQCQSRTPWRNVMHINVTRHG 187 + + LD +++ + + L GE+DF +F + + R + + Sbjct: 123 HPIYRNYMEQITYKLDFDKLKQGMEILKGEHDFKAFMLSEKNDIINTIRKIDDCYFVLNE 182 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + + KA +F+H+ VR + GSL+E+ + A T KA GLYL Sbjct: 183 NRLYLYFKAESFLHNQVRIMAGSLIELSRGKISLDDFKYYFNKNNTRRANPTLKAGGLYL 242 Query: 248 VAVDY 252 ++DY Sbjct: 243 DSIDY 247 >UniRef50_B1W3X8 tRNA pseudouridine synthase A n=16 Tax=Actinomycetales RepID=TRUA_STRGG Length = 284 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 86/261 (32%), Positives = 129/261 (49%), Gaps = 9/261 (3%) Query: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITV--FCAGR 58 MSDQ +P ++ L + YDG + GW +Q R+VQ ++E AL V +T AGR Sbjct: 1 MSDQAEPGFVRVRLDLSYDGKDFSGWAKQTSRRTVQGEIEDALRTVTRSSVTYDLTVAGR 60 Query: 59 TDAGVHGTGQVVHFETTALRK---DAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATA 115 TDAGVH GQV H + + + LP D+ + P F+ARFSA Sbjct: 61 TDAGVHARGQVAHVDLPEAVWAEHEEKLLRRLAGRLPLDVRIWRAAPAPAGFNARFSALW 120 Query: 116 RRYRYIIYNHRLR-PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTP 174 RRY Y + + + V PLD + M+ AA ++GE+DF ++ + + T Sbjct: 121 RRYAYRVGDRPGGVDPLTRGHVLWHDRPLDLDAMNEAAALMVGEHDFAAYCKKR-EGATT 179 Query: 175 WRNVMHINVTRH--GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKD 232 R + + R + ++A+AF H+MVR ++G+ + VG +P +W AE+LAAK Sbjct: 180 IRTLQKLRWVRDPATGVLTATVQADAFCHNMVRALIGAALFVGDGRRPAAWPAEVLAAKV 239 Query: 233 RTLAAATAKAEGLYLVAVDYP 253 R + GL L V YP Sbjct: 240 RDPGVHVVRPHGLTLEEVAYP 260 >UniRef50_Q9RS37 tRNA pseudouridine synthase A n=3 Tax=Deinococcus RepID=TRUA_DEIRA Length = 280 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 84/249 (33%), Positives = 125/249 (50%), Gaps = 5/249 (2%) Query: 7 PPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANE-PITVFCAGRTDAGVHG 65 P ++ L + +DG Y GWQ Q SVQE L+ AL + E + AGRTDAGVH Sbjct: 13 PGFTRLRLTVAWDGRDYAGWQEQRNAVSVQETLQTALHALGGEGALRPVSAGRTDAGVHA 72 Query: 66 TGQVVHFETTALR--KDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIY 123 +H++ +NA LP ++V + P FHARFS T RRY Y ++ Sbjct: 73 EAMPLHWDVPTTFRVPLVQLPRALNAWLPASVSVLSAEVAPAGFHARFSCTERRYVYRLW 132 Query: 124 NHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV 183 R + + H PLDAE M+RAAQ L+G +DF +F + R R+++ + V Sbjct: 133 VAPQRHPLWAGRALHVPGPLDAEAMNRAAQSLIGLHDFAAFATR--EDRQTVRDLLRLEV 190 Query: 184 TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 G + + +F+ HMVR +VG+L+ VG + + +LA+++R A A Sbjct: 191 QPQGELWDIHVAGESFLRHMVRGLVGTLLLVGQGKLGAAEVEGILASRERARAGANVPPG 250 Query: 244 GLYLVAVDY 252 GLY +Y Sbjct: 251 GLYFAGAEY 259 >UniRef50_A6DH96 Pseudouridylate synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DH96_9BACT Length = 276 Score = 257 bits (657), Expect = 3e-67, Method: Composition-based stats. Identities = 79/248 (31%), Positives = 122/248 (49%), Gaps = 4/248 (1%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN-EPITVFCAGRTDAGVHGTGQVV 70 L I++DG+ ++GWQ QN+ +VQE++EKAL+ + N I + +GRTDAGVH G Sbjct: 4 YKLSIQFDGTTWFGWQSQNDFEAVQEQIEKALNTLYNCSEIKIDGSGRTDAGVHAFGLCA 63 Query: 71 HFETT--ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 F + G+NA LP I +R DFHARFS + Y Y I N Sbjct: 64 TFTEPKISKFTSDTLRKGLNALLPVSIRIRSALQCETDFHARFSCIGKTYVYFIDNSTTS 123 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQ-SRTPWRNVMHINVTRHG 187 +L+ H + L+ E+M ++ Q L G++DF++F + R V + G Sbjct: 124 SPILAPYSWHMRKKLNREKMRQSLQHLEGKHDFSAFTVDRKNLQGHAIRTVFKAELIEIG 183 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 V + + F++ MVR++ G ++ VG Q + L + R+ A TA A+GL+L Sbjct: 184 HIVALLFTGDGFLYRMVRSMAGEVVNVGMEFQNPQHTLDALESHQRSEAGVTAPAKGLFL 243 Query: 248 VAVDYPDR 255 Y Sbjct: 244 GQCYYSKE 251 >UniRef50_A9RTE3 Pseudouridylate synthase n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RTE3_PHYPA Length = 299 Score = 256 bits (654), Expect = 6e-67, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 124/248 (50%), Gaps = 9/248 (3%) Query: 26 WQRQNEVRSVQEKLEKALSQVAN---EPITVFCAGRTDAGVHGTGQVVHFETTAL-RKDA 81 WQ Q S+QEK+E ALS+ + + + AGRTDAGVH GQV HF T Sbjct: 36 WQIQKNYVSIQEKVEDALSKFTRLPRDELKLVGAGRTDAGVHAWGQVAHFTTPTCFCDLE 95 Query: 82 AWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYE 141 +N LP DI + V +V DFHAR+SA + Y+Y Y + H Sbjct: 96 PLHTSLNGILPPDIRILEVSSVQPDFHARYSACRKTYQYKAYVSPVMDPFQHAYAYHIKN 155 Query: 142 PLDAERMHRAAQCLLGENDFTSFR--AVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAF 199 ++ M AA +G ++F++F + SR R+++ V+ GP ++ +++ +F Sbjct: 156 SVNIAAMEEAASYFVGTHNFSAFANHSADTASRDTLRDLLSFTVSSIGPQLLFEVEGKSF 215 Query: 200 VHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRT---LAAATAKAEGLYLVAVDYPDRY 256 ++ VRN+VG L++VG P S + +L +DR + A A GLYL++V Y D+ Sbjct: 216 MYKQVRNMVGLLVQVGKELVPPSMVRTILLTEDRRELAKISPVAPAHGLYLMSVGYDDKV 275 Query: 257 DLPKPPMG 264 P P Sbjct: 276 LRPVPNAP 283 >UniRef50_B4D9U5 Pseudouridylate synthase n=2 Tax=Verrucomicrobia RepID=B4D9U5_9BACT Length = 251 Score = 256 bits (654), Expect = 6e-67, Method: Composition-based stats. Identities = 82/246 (33%), Positives = 122/246 (49%), Gaps = 4/246 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++ + I YDG + GWQ Q +VQ+ +E A ++ + V +GRTDAGVH Q+ Sbjct: 6 RLKMLIAYDGRPFRGWQSQATKDAVQDHMEAAFAKTIGGRVVVHGSGRTDAGVHALAQIA 65 Query: 71 HFETTA-LRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 H + A + +AW +N LP +I V V DFHARF A + Y Y ++N Sbjct: 66 HADVPAARLEVSAWRGALNNFLPPEIRVLRVSRAAPDFHARFHARGKIYTYRMWNASYLH 125 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSF---RAVQCQSRTPWRNVMHINVTRH 186 + H LD + + + AQ L G++DF F RA + R + HI +TR Sbjct: 126 PLEIGRAWHMPSKLDLDILRQGAQMLEGKHDFAGFAANRAPGYAAEDTVRTIQHICLTRR 185 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G + + + N F++ MVR + G+L+ ++I ELLA K + A AEGLY Sbjct: 186 GDLLNLRFEGNGFLYKMVRLLTGTLVRCAQGRAELTFIKELLAGKGAKKTSFAAPAEGLY 245 Query: 247 LVAVDY 252 L V Y Sbjct: 246 LTRVLY 251 >UniRef50_C3JAB4 Pseudouridylate synthase (Fragment) n=2 Tax=Bacteria RepID=C3JAB4_9PORP Length = 264 Score = 256 bits (654), Expect = 7e-67, Method: Composition-based stats. Identities = 92/263 (34%), Positives = 133/263 (50%), Gaps = 10/263 (3%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + L I +DGS Y GWQRQ +VQ+ +E+ALS + PI++ AGRTDAGV+ Sbjct: 1 MPRYFLDIAFDGSSYCGWQRQPNGLAVQQVIEEALSLLFRTPISIVGAGRTDAGVNAYSL 60 Query: 69 VVHFETTALRK--DAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 H + K W +N LP +I +R ++ V HARF A +RRY Y I Sbjct: 61 PAHVDIPETAKGTPYRWRKSLNGILPHNINIRSIRPVQPSAHARFDAISRRYLYFI--AE 118 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 R + V D E+M++AAQ LLG +DFTSF + + T + + Sbjct: 119 ERDPFNRQWVLPVRPFPDIEKMNQAAQYLLGTHDFTSFSRLHTDTHTNICTIQEAFWSPS 178 Query: 187 G--PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 I AN F+ +MVR IVG+L+EVGA I E++ A+DR A A+ + E Sbjct: 179 SYPSTWQFSITANRFLRNMVRAIVGTLLEVGASTLAPEDIIEIIRAQDRNRAGASVRGEA 238 Query: 245 LYLVAVDYPDRY----DLPKPPM 263 L+L V+YP ++P+ Sbjct: 239 LFLAHVEYPKEIYLDSNIPQTDS 261 >UniRef50_Q0SPF2 tRNA pseudouridine synthase A n=21 Tax=Borrelia RepID=TRUA_BORAP Length = 246 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 76/246 (30%), Positives = 135/246 (54%), Gaps = 1/246 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + KI I YDGS Y+G+Q Q ++Q ++EKAL ++ + I + +GRTD GVH Q Sbjct: 1 MKKILAEIAYDGSMYHGFQIQPTKPTIQGEIEKALMKINKKKIKIHSSGRTDKGVHAKRQ 60 Query: 69 VVHFETTALRKDAAWTLGVNA-NLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 ++ F+ + +NA L I + +K V + FH RF+A R+Y Y I N Sbjct: 61 IITFDININIQLNNLKKALNAILLKPGIKILKLKHVKNSFHPRFNAQKRKYSYCILNSDN 120 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 S + + L+ +++ A+ L+G +DFT+F ++ +S++ +R++ + G Sbjct: 121 YYPWESYQAYYVNKKLNINNLNQMAKILIGNHDFTTFSCIKDKSKSKFRHIHSAKFKKKG 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 Y++ +I ++F+ MVR+I+G+++++ N+ S +L +K+R LA TA A L+L Sbjct: 181 KYIIFEIIGSSFLWKMVRSIIGTMLDIEIKNESISTFETILKSKNRNLARTTAPANALFL 240 Query: 248 VAVDYP 253 V Y Sbjct: 241 DKVYYE 246 >UniRef50_C6WLZ4 Pseudouridylate synthase n=4 Tax=Actinomycetales RepID=C6WLZ4_ACTMD Length = 314 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 85/253 (33%), Positives = 123/253 (48%), Gaps = 2/253 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 ++ L + YDG+++ GW RQ R+V LE +S V E + + AGRTDAGVH GQ Sbjct: 36 RVRVRLDLAYDGTEFSGWARQPNRRTVCGVLEDTMSTVLREDVVLTVAGRTDAGVHAAGQ 95 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL- 127 V H + A + LP D+ V + VP F ARF+A R Y Y + + Sbjct: 96 VAHVDLPEAADVAGLPKRLARALPADVRVFSARVVPAAFDARFAALRRHYEYRVTDAPFG 155 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + + LD M+ A+ +LGE DF ++ + + T R + + R G Sbjct: 156 AHPLRRLDTLAWPRQLDVAAMNAASGLMLGERDFCAYCRRR-EGATTIRELQRLEWVREG 214 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + + A+AF H MVR++VG+L+ VG +P W A LL+ R+ A GL L Sbjct: 215 DLLTAFVSADAFCHSMVRSLVGALLAVGEGRKPVEWPASLLSLHSRSSEVTVAPPHGLSL 274 Query: 248 VAVDYPDRYDLPK 260 V VDYP DL Sbjct: 275 VRVDYPADEDLAA 287 >UniRef50_D2QH82 tRNA pseudouridine synthase A n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QH82_9SPHI Length = 252 Score = 255 bits (651), Expect = 1e-66, Method: Composition-based stats. Identities = 85/247 (34%), Positives = 121/247 (48%), Gaps = 4/247 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + + + Y G+ Y+GWQ Q S+Q LE ALSQ +P+ + +GRTDAGVH Q Sbjct: 2 RYFIELSYRGTAYHGWQTQANGISIQITLEAALSQRLGKPVYIMGSGRTDAGVHAKQQFA 61 Query: 71 HFETTALRK-DAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 HF++ + +N LP DIA+ + V D HARFSA +R Y+Y I R + Sbjct: 62 HFDSEEPLDITESLIYSLNCMLPEDIAIHAIFPVSDKTHARFSAISRYYQYHIT--RQKD 119 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG-P 188 A HF L+ +RM+ A LL +F SF + + Sbjct: 120 AFQGTLTYHFRPQLNVDRMNEACTLLLRHTNFQSFSKARANVTHFHCQLEFAYWRYTNVD 179 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + IKAN F+ MVR IVG+++E+G +++ A+DR +A A A GLYLV Sbjct: 180 CLTFHIKANRFLWGMVRTIVGTMLEIGQERMSLEQFEKIILARDRKIAGRAAPANGLYLV 239 Query: 249 AVDYPDR 255 V YP Sbjct: 240 EVGYPAE 246 >UniRef50_B6YQE4 tRNA pseudouridine synthase A n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=TRUA_AZOPC Length = 249 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 129/246 (52%), Gaps = 2/246 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + + + Y+G Y GWQ Q +VQ+++++ LS + + +T+ AGRTDAGVH Sbjct: 1 MNRYFIYLAYNGRNYCGWQIQPNGITVQQRIQQCLSILLRKSVTIIGAGRTDAGVHANLM 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 HF+ + + T +N LP DI + + V + HARF A +R+Y+Y I + Sbjct: 61 TAHFDWEEILSTTSLTKRLNGILPCDILIYKIIPVKKNAHARFDAISRKYKYYITYQK-- 118 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 ++ + +PL+ M+ A+ L +DFTSF + +RT + Sbjct: 119 NPFRNEQLFRLKQPLNKHLMNEASNILSEYSDFTSFCKLHSNTRTNVCRISKAEWNTVQG 178 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + IKA+ F+ +MVR+IVG+++++G + + +++ +K+ + ++ A L+L Sbjct: 179 IDIFTIKADRFLRNMVRSIVGTMIDIGKNKLSITDFRKIIESKNHIMLKSSVPAHALFLT 238 Query: 249 AVDYPD 254 ++YP+ Sbjct: 239 DIEYPN 244 >UniRef50_C3WLS9 Pseudouridylate synthase n=2 Tax=Fusobacterium RepID=C3WLS9_9FUSO Length = 246 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 81/246 (32%), Positives = 125/246 (50%), Gaps = 3/246 (1%) Query: 8 PVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 I + YDGS+YYG+QRQ +VQ ++EK L V E I + AGRTD GVH Sbjct: 2 ERKNIKIEFRYDGSRYYGFQRQPNKETVQGEIEKILKIVTKEDINLISAGRTDRGVHANH 61 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QV +F T++ + + LP DI + V+ V + F+AR A R Y YII Sbjct: 62 QVSNFYTSSTIPVEKYKYLLTRALPKDIDILSVEEVDEKFNARHDAKMREYVYII--SWE 119 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR-H 186 + ++ + +DAER+ + LG +DF +FR C S+ R + I+V Sbjct: 120 KNPFEARYCKFVKDKIDAERLEKIFSSFLGIHDFRNFRLSDCMSKVTVREIYSIDVKYFS 179 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 + + I+ +AF+ VR +VG+ +EV N P++ I +L + + +AEGLY Sbjct: 180 ENKLKICIRGSAFLKSQVRIMVGTALEVYYKNLPKNHIDLMLNDFSKEYKKSLVEAEGLY 239 Query: 247 LVAVDY 252 L ++Y Sbjct: 240 LNRINY 245 >UniRef50_A9HKQ8 Pseudouridylate synthase n=4 Tax=Alphaproteobacteria RepID=A9HKQ8_GLUDA Length = 258 Score = 253 bits (648), Expect = 3e-66, Method: Composition-based stats. Identities = 105/253 (41%), Positives = 139/253 (54%), Gaps = 4/253 (1%) Query: 7 PPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQ-VANEPITVFCAGRTDAGVHG 65 P + + A+ IEYDG + GWQRQ SVQ+ LE+A S+ + + AGRTDAGVH Sbjct: 4 PSLQRWAVRIEYDGRPFVGWQRQITGLSVQQVLEEAASRLASGRVVPSITAGRTDAGVHA 63 Query: 66 TGQVVHFETTA--LRKDAAWTLGVNANL-PGDIAVRWVKTVPDDFHARFSATARRYRYII 122 TGQ H + D+ +N ++ P +AV V ++ ARFSA R YRY I Sbjct: 64 TGQAAHLDFPGDVRLNDSTVRDALNFHMKPYPVAVLRACPVDTEWSARFSAIRRSYRYRI 123 Query: 123 YNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHIN 182 N R RP + V LD M RAA+ LLG +DFTSFRA CQ+R+P R + + Sbjct: 124 LNRRSRPTLDDGRVWLVKRTLDEAAMARAARLLLGRHDFTSFRASACQARSPLRTLDRLG 183 Query: 183 VTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 V R G +V++ +A +F+HH VRN+VG+L VG +A LAA DR A TA Sbjct: 184 VVRQGEEIVIEAEARSFLHHQVRNMVGTLKLVGEGLWAPDRVAAALAACDRRAAGPTAPP 243 Query: 243 EGLYLVAVDYPDR 255 +GLYL V Y Sbjct: 244 DGLYLTGVGYDPD 256 >UniRef50_A4SAH5 Pseudouridylate synthase n=4 Tax=Mamiellales RepID=A4SAH5_OSTLU Length = 286 Score = 253 bits (648), Expect = 4e-66, Method: Composition-based stats. Identities = 78/259 (30%), Positives = 121/259 (46%), Gaps = 14/259 (5%) Query: 11 KIALGIEYDGSKYYGWQRQ-NEVRSVQEKLEKALSQVAN---EPITVFCAGRTDAGVHGT 66 AL I YDG +Y G+Q Q +V ++Q +LE+AL+++ E + + AGRTDAGVH Sbjct: 17 TYALKISYDGERYNGFQYQGEDVPTIQRELERALAKLTGIDRERLRLGAAGRTDAGVHAR 76 Query: 67 GQVVHFETTALRKDA--AWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYN 124 GQV HF + +N LP DI V FH+RF A+ + Y Y + Sbjct: 77 GQVAHFYCEKSLGEDLTRCQKAMNGMLPKDIRVDAFWEPHPLFHSRFHASGKTYHYYVDA 136 Query: 125 HRLRPAVLSKGVTHFY-EPLDAERMHRAAQCLLGENDFTSFRA----VQCQSRTPWRNVM 179 K P D E + +AAQ +G D+ F + R R + Sbjct: 137 RATSSPFTRKYAHQVGWRPCDVELLRQAAQLFVGTMDYKGFCNTSRDKSNEDRNTTRTIR 196 Query: 180 HINVTRH---GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLA 236 +V + ++++ + F++ VRN+VG+L+ V + +++ L+ KDR+ A Sbjct: 197 RFDVFEDAADDGLIRLEVEGDGFLYRQVRNMVGALLVVASGKHDLAYLRTLIETKDRSRA 256 Query: 237 AATAKAEGLYLVAVDYPDR 255 A A GL+L V YP Sbjct: 257 PMGAPARGLFLHEVFYPTE 275 >UniRef50_Q7NAQ9 tRNA pseudouridine synthase A n=1 Tax=Mycoplasma gallisepticum RepID=TRUA_MYCGA Length = 262 Score = 253 bits (647), Expect = 5e-66, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 110/244 (45%), Gaps = 3/244 (1%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 + + I Y G+K++G+ QN+ +VQ KL+ AL+ + I V +GRTD GVH Q Sbjct: 22 KNVLINISYHGTKFHGYAVQNDYETVQSKLQDALAWIYESKIYVNASGRTDKGVHAINQY 81 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 + F +N ++W+K V +FHARFSA A+ Y Y+I ++ Sbjct: 82 ISFYIDDRISLEKLREILNRYGQNKWYIKWIKEVDRNFHARFSAKAKTYLYLI-DYCANN 140 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPY 189 + LD + +A L G ++F SF R + I++ + Sbjct: 141 PLFYDHAWIVNFQLDFNLIEKAIPILEGTHNFWSFSTADKDK--GLRTIHKIDLKQEDNK 198 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 V + I + F+ MVR IVG+L +G + + LL + A A A GLYL Sbjct: 199 VYIYITGDGFLRSMVRMIVGALYNIGIKKYDLNHLKWLLDNPKKGRAITKAPASGLYLYE 258 Query: 250 VDYP 253 V Y Sbjct: 259 VYYE 262 >UniRef50_Q8R601 tRNA pseudouridine synthase A n=14 Tax=Fusobacterium RepID=TRUA_FUSNN Length = 247 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 79/246 (32%), Positives = 122/246 (49%), Gaps = 3/246 (1%) Query: 8 PVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 I + YDGS YYG+QRQ +VQ ++EK L V E I + AGRTD GVH Sbjct: 4 RRKNIKIEFRYDGSSYYGFQRQPNKITVQGEIEKVLRIVTKEEINLISAGRTDRGVHANH 63 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QV +F T++ + + LP DI + V+ V ++F+AR +A R Y YII Sbjct: 64 QVSNFYTSSNIPIEKYKYLLTRALPNDIDILSVEEVDENFNARHNAKMREYIYII--SWE 121 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 + ++ E + AE++ + +G +DF +FR C S+ R + I V G Sbjct: 122 KNPFEARYCKFVKEKIVAEKLEKIFSDFIGVHDFKNFRLSDCVSKVTVREIYQIEVKYFG 181 Query: 188 P-YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 + + IK +AF+ VR +VG+ +E+ E+ I +L + +AEGLY Sbjct: 182 ENKIKIYIKGSAFLKSQVRIMVGTALEIYYGRLLENHIRLMLNDFTKEYKKNLVEAEGLY 241 Query: 247 LVAVDY 252 L ++Y Sbjct: 242 LNKIEY 247 >UniRef50_Q3AW68 tRNA pseudouridine synthase A n=39 Tax=cellular organisms RepID=TRUA_SYNS9 Length = 300 Score = 251 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 95/268 (35%), Positives = 136/268 (50%), Gaps = 4/268 (1%) Query: 4 QQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN-EPITVFCAGRTDAG 62 +QP + +IAL ++Y+GS + GWQRQN RSVQ LE A++Q+ PI F AGRTDAG Sbjct: 10 PEQPILRRIALSLQYEGSDFCGWQRQNNARSVQAVLETAIAQLDPLRPIQSFAAGRTDAG 69 Query: 63 VHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYII 122 VH QVVHF+ + A W +N LP I VR P D+HA +SA RRYRYII Sbjct: 70 VHAAAQVVHFDCSGPIPAAKWAPALNGRLPASIRVRESVERPRDWHACYSAVYRRYRYII 129 Query: 123 YNHRLRPAVLSKGVTH-FYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHI 181 +N R L+ H ++ L+ E M A + ++G +DF +F + + + Sbjct: 130 HNGRRPNLFLTPWTWHRYHHRLNEENMRVALEGMIGLHDFAAFMRAGSRRPHSRTTIQDV 189 Query: 182 NVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAK 241 V R G + V+I+A+ F++ MVR ++ L+ VG H + + R A Sbjct: 190 LVEREGDLIRVEIQASGFLYGMVRLLMAQLVAVGEHRLSVKAFEQRWRDRRRDQVREAAP 249 Query: 242 AEGLYLVAVDYPDRYDLPKPPM--GPLF 267 A GL L+ Y + P F Sbjct: 250 ARGLCLLRAGYAEPIFSEAGWYDCQPWF 277 >UniRef50_B4U9D9 tRNA pseudouridine synthase A n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=TRUA_HYDS0 Length = 247 Score = 251 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 109/250 (43%), Gaps = 9/250 (3%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKAL------SQVANEPITVFCAGRTDAG 62 + I + G+ Y GWQ Q V ++Q ++E+ L + + I RTD G Sbjct: 1 MKNYKFTISFVGTNYSGWQYQPNVPTIQNEVEEKLYYIVNKKKPIKQKIRAIGCSRTDKG 60 Query: 63 VHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYII 122 VH V + + + +N+ LP DI + ++ VP +F++RF A + Y Y + Sbjct: 61 VHAIEFVFNVKMEFDKDLNFLRKALNSALPKDIKIHNIEEVPLEFNSRFDALKKTYIYKL 120 Query: 123 YNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHIN 182 + Y+P D +M + LG DF F + + +V +I Sbjct: 121 FFDEKNSPFFQDRAMLVYKPTDLGKMMEISHLFLGYKDFRGFTKE-LEDENGYCSVENIT 179 Query: 183 VTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 P V + I AN F+ +MVR +VG+++ + + L AK ++ TAKA Sbjct: 180 FKVDYPLVEISITANRFLRYMVRRMVGTMLSYAQGLISIDDVNDFLKAK--RVSNHTAKA 237 Query: 243 EGLYLVAVDY 252 GLYL V Y Sbjct: 238 HGLYLKKVYY 247 >UniRef50_Q4FNF9 tRNA pseudouridine synthase A n=5 Tax=Bacteria RepID=TRUA_PELUB Length = 246 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 77/246 (31%), Positives = 132/246 (53%), Gaps = 2/246 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 +++ + IEY G+ + GWQ Q++ +S+Q++++ LS+ E + + +GRTDAGVH Q Sbjct: 1 MFRYQVLIEYIGTNFVGWQIQSKGKSIQKEIQVKLSKFLKEKVVLIGSGRTDAGVHAIEQ 60 Query: 69 VVHFETTALR-KDAAWTLGVNANLPGD-IAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 HF+ +N + I+V +K FHAR SA R Y+YII+N Sbjct: 61 SAHFDCKKEIQNLDKLLKSINHFINDKGISVLAIKKRSLKFHARHSAKQRIYKYIIFNRL 120 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 +P++ + H + LD E M + ++ LLG DF++FRA C +++P + + +N+ Sbjct: 121 SKPSLEKERGWHIIKKLDIELMKKGSKKLLGTKDFSTFRASSCNAKSPIKTMKSVNIKSK 180 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 + + K+ +F+ VR++VGSL + + ++ +K R L A A AEGL+ Sbjct: 181 DGRIEIQFKSQSFLQQQVRSMVGSLKYLAENKWDLKKFEFVIKSKKRILCAPPAPAEGLF 240 Query: 247 LVAVDY 252 L V Y Sbjct: 241 LEKVIY 246 >UniRef50_B0G612 Pseudouridylate synthase n=7 Tax=Bacteria RepID=B0G612_9FIRM Length = 310 Score = 251 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 72/248 (29%), Positives = 125/248 (50%), Gaps = 7/248 (2%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEV---RSVQEKLEKALSQVANEP-ITVFCAGRTDAGVH 64 + I + IEYDGS+Y GW R + ++ K+ L ++ E I + C RT+ GVH Sbjct: 66 MRNIKITIEYDGSRYQGWTRLGKDESNNTISAKIIDVLGKMTGEKNIELNCGCRTEVGVH 125 Query: 65 GTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYN 124 QV +F+T++ +N LP DIA+ V+ VPD FHA+ +A ++ Y Y + Sbjct: 126 AYAQVANFKTSSNLSTKDIQHYLNRYLPMDIAITEVEEVPDRFHAQLNAVSKTYVYRMTI 185 Query: 125 HRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT 184 + K H ++ D + M +AA +GE+DF +F + S+ R V I++ Sbjct: 186 MDVPSVFERKHTYHCFKTPDKKAMQQAALLFIGEHDFRNFSTAKK-SKNTTREVYDIDIY 244 Query: 185 RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEG 244 + + I+A+ F+H+M R ++G+L+++G + + I + + +G Sbjct: 245 GDNEEMQILIQADDFLHNMARLMIGTLLDIGFGLRKKEDIEAIFNGE--KAVGNPCDPKG 302 Query: 245 LYLVAVDY 252 LYL V+Y Sbjct: 303 LYLQEVEY 310 >UniRef50_A9NEH2 Pseudouridylate synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEH2_ACHLI Length = 240 Score = 250 bits (639), Expect = 4e-65, Method: Composition-based stats. Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 3/242 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + YDG+ Y G+Q+Q +Q +EKA + I F A RTD GVH QV+ Sbjct: 2 RYKAIFSYDGTNYSGYQKQINQLGIQTVIEKAFRLMTQIDIETFAASRTDKGVHALHQVL 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF++ W +N LP DI + V V D+FHAR SA ++RY Y I + Sbjct: 62 HFDSDIELTSDQWVDALNKRLPTDIRLMKVTPVKDNFHARHSAKSKRYIYKI--AKQPST 119 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 V + + D + + ++G +DF+ F + P + + + + Sbjct: 120 VFRGNHELYVKHFDIDLVKDHLHTIVGTHDFSGFSPNKEHKP-PIKTIYSFDYKETKTHY 178 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 + I N+F+ +MVR I+G+++ V + +P++ + LL K+R L+A TA A+GLYL + Sbjct: 179 IFSIHGNSFLRYMVRIIMGNVIAVATNKKPQNQLEILLETKNRELSAKTADAKGLYLKHI 238 Query: 251 DY 252 Y Sbjct: 239 YY 240 >UniRef50_C1A3U6 Pseudouridylate synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A3U6_GEMAT Length = 259 Score = 250 bits (638), Expect = 5e-65, Method: Composition-based stats. Identities = 87/248 (35%), Positives = 119/248 (47%), Gaps = 4/248 (1%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANE-PITVFCAGRTDAGVHGTGQ 68 I L +YDG ++ GWQRQ +VR+VQ +E+ L +++ + AGRTDAGVH GQ Sbjct: 4 RPILLVTQYDGGRFAGWQRQPDVRTVQGDMERVLGRLSGGLYVPAVGAGRTDAGVHAHGQ 63 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL- 127 V +NA LP DI V + +FH R+SATARRY Y+I L Sbjct: 64 GVGVRMPPQWTAPRLRRAMNALLPDDIWVAAAYQMEPEFHPRYSATARRYGYLIGTDELA 123 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQ--SRTPWRNVMHINVTR 185 + + PLD E +H A LLGE+ F +F + H Sbjct: 124 SSPFRRRHEWALHRPLDVEALHGEAAELLGEHTFRAFAIAHTAPVDDHHRCIIHHAAWVP 183 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 V ++ AN F+HHMVR +VG++++V +P IA LL D + A A GL Sbjct: 184 REGGWVFEVSANRFLHHMVRFLVGTMVDVALGRRPRGTIARLLVTPDNADTSPPAPAHGL 243 Query: 246 YLVAVDYP 253 L V YP Sbjct: 244 SLREVTYP 251 >UniRef50_A0LRQ0 Pseudouridylate synthase n=2 Tax=Actinomycetales RepID=A0LRQ0_ACIC1 Length = 297 Score = 249 bits (636), Expect = 8e-65, Method: Composition-based stats. Identities = 95/260 (36%), Positives = 135/260 (51%), Gaps = 18/260 (6%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQ--VANEPITVFCAGRTDAGVHGTGQ 68 ++ + + YDG+ + G+ RQ +R+VQ ++E+AL+ EP V AGRTDAGVH GQ Sbjct: 20 RLRIDLGYDGTDFAGFARQPGLRTVQAEVERALAVVLRLPEPPPVTAAGRTDAGVHARGQ 79 Query: 69 VVHFETT-------------ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATA 115 V+H + A A +N LP DIAV V P F ARFSA A Sbjct: 80 VLHVDVPIDALRVVGAAETGAADAVAQLAARLNGVLPDDIAVHAVGLAPPGFDARFSALA 139 Query: 116 RRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPW 175 RRY Y + + R + + + PLD M+ A LLGE+DF +F + ++ T Sbjct: 140 RRYSYRVADRRW-DPLRRRDTLRWPRPLDETAMNAAGAALLGEHDFAAFCRRR-ENATTI 197 Query: 176 RNVMHINVTRHGP-YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRT 234 R ++ R G +V ++A+AF H MVR +VG+++ VGA +P W AE+LAA+ R Sbjct: 198 RRLLRFEWLRDGDGVLVAQVEADAFCHSMVRALVGAVLAVGAGRRPVGWPAEVLAARARD 257 Query: 235 LAAATAKAEGLYLVAVDYPD 254 A GL L V YP Sbjct: 258 PAVTVVPPHGLTLEEVCYPP 277 >UniRef50_C2D958 Pseudouridylate synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D958_9ACTN Length = 311 Score = 249 bits (636), Expect = 8e-65, Method: Composition-based stats. Identities = 96/275 (34%), Positives = 134/275 (48%), Gaps = 16/275 (5%) Query: 2 SDQQQPPVYKIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTD 60 + + P V + + Y G+ + G+ QNE VRSV+ L +ALS IT+ CAGRTD Sbjct: 34 TSEFDPFVATLVIRFGYVGTHFCGYAAQNESVRSVEGCLTRALSTFLRRNITLTCAGRTD 93 Query: 61 AGVHGTGQVVHFETTAL---RKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARR 117 AGVH Q V F T ++ P DI++R + P DF ARFSA R Sbjct: 94 AGVHAHAQYVSFPITQSELGMSKHKIMSALSGLCPDDISIRTLYRAPLDFSARFSACERS 153 Query: 118 YRYIIYNHRLRPAVLSKGVTHFY--EPLDAERMHRAAQCLLGENDFTSFRAVQC------ 169 Y Y I L+P + + V + + M+ A + L GE++F SF Sbjct: 154 YTYRIALGPLKPILTHEFVWWVKNIPHVCMDDMNAAGEYLAGEHNFKSFCKASSAQLLEE 213 Query: 170 QSRTPWRNVMHINVTRH----GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIA 225 Q + R + I V+R + +DI NAF+H+MVR I SL+EVG + WI Sbjct: 214 QGLSLNRCLTSIKVSRDYIVGEQILRLDITGNAFLHNMVRIITASLLEVGRGARQPDWIQ 273 Query: 226 ELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDLPK 260 ++L + RT AA TA A+GL L V YP +P Sbjct: 274 DVLRQQTRTAAAMTAPAQGLTLERVGYPAGLLVPW 308 >UniRef50_C4Z454 Pseudouridylate synthase n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z454_EUBE2 Length = 245 Score = 249 bits (636), Expect = 9e-65, Method: Composition-based stats. Identities = 66/247 (26%), Positives = 125/247 (50%), Gaps = 5/247 (2%) Query: 9 VYKIALGIEYDGSKYYGWQRQNE---VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHG 65 +Y + IEYDG +Y GWQR + +++ +L + ++++ E + ++ RT+ GVH Sbjct: 1 MYNYRIEIEYDGGRYDGWQRLGKDASTNTIESRLCEIIARMTGETVDMYAGSRTEKGVHA 60 Query: 66 TGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 Q +F+ K +N LP DIAV V + FH++ +A ++ Y Y + Sbjct: 61 LCQTANFKLEKEVKAIEIKNYLNRYLPRDIAVMSVTEADERFHSQLNAKSKIYEYRLDTG 120 Query: 126 RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR 185 + K H ++ D + M +AA G++DF +F + S++ + + I+V Sbjct: 121 NVANVFRRKYAYHTFDKPDFDAMRKAAGYFEGKHDFKAFTTAKK-SKSTEKTIKKISVEY 179 Query: 186 HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 G + I+A+ F+H+M R I+G +++VG + + L ++ ++ A++ GL Sbjct: 180 EGARAYIRIEADDFLHNMARYIIGMMLDVGNGIKKPEDVKRCLDGENIQMSLP-AESYGL 238 Query: 246 YLVAVDY 252 +LV V Y Sbjct: 239 FLVKVVY 245 >UniRef50_A1BFF0 tRNA pseudouridine synthase A n=10 Tax=Chlorobiaceae RepID=TRUA_CHLPD Length = 258 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 115/248 (46%), Gaps = 3/248 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEV-RSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + I + IEYDG+ Y GWQRQ +VQ ++E+ LSQ+ E I + AGRTD GVH Sbjct: 9 MKNIRITIEYDGTGYAGWQRQAGSFCTVQGEIERILSQILQEDIRLAGAGRTDKGVHARA 68 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 Q+ F++ + +NA LP I + VP+ FHAR SA R YRY + Sbjct: 69 QIATFKSRSSLGPDRMVHSMNALLPNTIRISDPLVVPEGFHARHSAKEREYRYFV--REE 126 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHG 187 AVL + Y LD M+R A +LGE+DF+ F V+ R Sbjct: 127 PSAVLGRFSGCSYGSLDLMSMNRVASYVLGEHDFSVFSKETRDRTGCLCRVISCKWFRQR 186 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + V+ I AN F+ MVR + +++ G E++ + T A GL+L Sbjct: 187 EFFVLRISANRFLRSMVRYLAALMIDSGKGLLSPEEAREMIESGILTRQLVPAAPNGLFL 246 Query: 248 VAVDYPDR 255 + Y Sbjct: 247 WKITYGSD 254 >UniRef50_C4DMY7 Pseudouridylate synthase n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DMY7_9ACTO Length = 300 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 81/250 (32%), Positives = 128/250 (51%), Gaps = 6/250 (2%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 ++ L I YDG+ + GW Q R+V ++ ALS + +P + AGRTDAGVH TGQV Sbjct: 23 RLRLDICYDGTDFAGWAFQPGQRTVAGEVFTALSALFGQPEGLTVAGRTDAGVHATGQVA 82 Query: 71 HFETTALRKDAAWTL---GVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 H + A + LP D+ + + V +F+ARFSA +RRY Y + + Sbjct: 83 HVDVPAAAWARYRDRPLWRLRGILPPDVRITAITEVSSEFNARFSALSRRYVYRVADTVW 142 Query: 128 R-PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 + + P+D + M+ AA L+GE+DF +F + + T R + + R Sbjct: 143 GVNPLRRLDTVAWPRPVDLDVMNAAATVLVGEHDFAAFCKRR-EGATTVRALRTVRWDRD 201 Query: 187 GPYV-VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 + + A+AF H MVR++VG+++ VG + +W+A LL +R+ A A GL Sbjct: 202 ADGIARATVVADAFCHSMVRSLVGAMLAVGEGRRDAAWLAALLTRGERSGEVLVAPANGL 261 Query: 246 YLVAVDYPDR 255 LV V++P Sbjct: 262 TLVEVEFPAD 271 >UniRef50_B3EU82 Pseudouridylate synthase n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3EU82_AMOA5 Length = 253 Score = 246 bits (629), Expect = 6e-64, Method: Composition-based stats. Identities = 81/249 (32%), Positives = 114/249 (45%), Gaps = 7/249 (2%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + L I Y G+ Y+GWQ Q SVQ ++K L+Q+ + I + + RTD GVH Q Sbjct: 2 RYFLEIAYQGTHYHGWQIQQNATSVQAVIQKKLTQLLSTNIEIVGSSRTDTGVHAQQQFA 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 H + +N +P DIA+ + V H+RF A +R Y Y I + Sbjct: 62 HVDMPFTIDIDKLKYKLNLIVPSDIAILGIHPVLPTAHSRFDALSRTYVYKI--SCTKNP 119 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRT----PWRNVMHINVTRH 186 + F LD E+M+ AA L +F SF V + N++ + + Sbjct: 120 FMQATTYVFRRVLDLEKMNEAAAILKIYKNFESFSKVGSITDHTLYPNLCNIIEAHWSTG 179 Query: 187 -GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGL 245 ++ I AN F+ MVR IVG+L+EVG L KDR LAA+ A GL Sbjct: 180 SNDQLIFQITANRFLRGMVRAIVGNLLEVGLGKCSVKDFEYTLVQKDRNLAASLVPACGL 239 Query: 246 YLVAVDYPD 254 LV V YPD Sbjct: 240 TLVNVTYPD 248 >UniRef50_Q6A6S8 tRNA pseudouridine synthase A n=6 Tax=Actinomycetales RepID=TRUA_PROAC Length = 279 Score = 246 bits (629), Expect = 6e-64, Method: Composition-based stats. Identities = 85/262 (32%), Positives = 129/262 (49%), Gaps = 7/262 (2%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVAN--EPITVFCAGRTDAGVHGT 66 + + L I YDG+ + GW Q + R+VQ +LE + +V +P + AGRTDAGVH Sbjct: 1 MTRWRLDIAYDGANFSGWATQPDRRTVQGELETWIPRVLRLDQPTPLTVAGRTDAGVHAR 60 Query: 67 GQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYN-H 125 GQV H + +A ++ L D+ V+ V+ VP F ARFSA RRY Y +++ Sbjct: 61 GQVAHVDLPDNVDTSAMLRRLSRVLTPDVVVKSVRPVPSTFDARFSALWRRYVYRLWDES 120 Query: 126 RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR 185 V V LD +R++ A LLG DF +F + + T R ++ + R Sbjct: 121 SRPDPVTRFHVAPVRGHLDLDRLNTAGTSLLGLRDFAAFCKHR-EGATTIRTLLDCHAKR 179 Query: 186 HGP---YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA 242 V V ++A+AF H MVR++VG+L V + + + W+ + A+ R + A Sbjct: 180 LDDPCGTVEVTVRADAFCHSMVRSLVGALTAVASGRRSQDWLDNVAASTSRASSVLVMPA 239 Query: 243 EGLYLVAVDYPDRYDLPKPPMG 264 GL L V YP DL + Sbjct: 240 CGLTLEEVGYPSDEDLAQRAAQ 261 >UniRef50_O28544 tRNA pseudouridine synthase A n=2 Tax=Archaeoglobus RepID=TRUA_ARCFU Length = 265 Score = 246 bits (628), Expect = 8e-64, Method: Composition-based stats. Identities = 72/251 (28%), Positives = 119/251 (47%), Gaps = 22/251 (8%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + K A I Y G ++G Q Q + R+V+ ++ AL ++ E + AGRTDAGVH GQ Sbjct: 1 MMKFAFKIAYFGDNFHGSQFQPDQRTVEGEVINALRRLGVENPRLRSAGRTDAGVHAYGQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V+ F + + +NA LP DI V +DF R A +R Y Y++Y Sbjct: 61 VISFYSEDKI----FPRMLNAELPEDITAWAWAKVSEDFDPRR-AKSRVYTYVMYGSDY- 114 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 D M +A + L+G +DF++F + + R ++ ++ Sbjct: 115 ---------------DISAMRKAVKELIGVHDFSNFTKKFGEGESCVREIISADIRADRE 159 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 +++ +I+ NAF +MVR IV ++ME+G ++ W +LL + A GL L Sbjct: 160 FIIFEIEGNAFTWNMVRCIVTAIMEIGKQHRSIEWFRDLLNPEKHKERVEPAPPYGLILK 219 Query: 249 AVDYPD-RYDL 258 V Y D +++ Sbjct: 220 DVKYDDVEFEI 230 >UniRef50_C2KS13 Pseudouridylate synthase n=2 Tax=Mobiluncus mulieris RepID=C2KS13_9ACTO Length = 326 Score = 246 bits (628), Expect = 8e-64, Method: Composition-based stats. Identities = 94/307 (30%), Positives = 137/307 (44%), Gaps = 62/307 (20%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + +I I YDG ++GW RQ + +VQ LE AL+ + +P+T+ AGRTDAGVH TGQ Sbjct: 1 MTRIRFDIRYDGRPFHGWARQPGLPTVQGALETALTVLFRQPVTLTVAGRTDAGVHATGQ 60 Query: 69 VVHFET-----------------------------TALRKDAAWTLGVNANL-------- 91 V HF+ + + G++ L Sbjct: 61 VAHFDLPDQFSGDWLRDAHDTEFAASLGAIVAASNPPGIANFQLSTGLHRRLESVLRLVT 120 Query: 92 ------------------PGD----IAVRWVKTVPDDFHARFSATARRYRYIIYNHRL-R 128 P + I V + VPD F ARFSA AR Y Y++ + R Sbjct: 121 SGNTPTIPGLNLDDQPIYPPEANGAIVVTAARPVPDAFDARFSALARHYEYLVIDEPTAR 180 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTR-HG 187 + + PL+ RMH A+ LLG +DF +F + + T R + + V+R Sbjct: 181 NPLTRNTCWWYGAPLNVARMHEASAGLLGTHDFAAFCKPR-EGATTIRTLKQLGVSRLAP 239 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + D+ A+AF H MVR++VG+L EVG + W+ + L + R A A+GL L Sbjct: 240 GEIRFDVAADAFCHSMVRSLVGALTEVGRGKRDADWLEQALHSAVRIPEIPLAPAQGLTL 299 Query: 248 VAVDYPD 254 V VDYP Sbjct: 300 VRVDYPQ 306 >UniRef50_Q2NIY3 tRNA pseudouridine synthase A n=4 Tax=Candidatus Phytoplasma RepID=TRUA_AYWBP Length = 243 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 121/241 (50%), Gaps = 3/241 (1%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVH 71 L + YDG+ Y G+Q+Q + ++VQ+ EKAL ++ ++ I F A RTD GVH GQ +H Sbjct: 6 YKLILSYDGTFYCGYQKQPQKKTVQQTFEKALKKMTHQNIPTFAASRTDKGVHSQGQTLH 65 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 F+TT K + +N LP DI VR + +FHAR+SA ++ Y+Y+ L A Sbjct: 66 FQTTFSLKPKHFQKTLNYLLPPDIRVRQMHFATPNFHARYSAKSKIYQYVFSKKPL-NAF 124 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVV 191 F + D ++ +A + + G ++F +F + Q + + + ++ + Sbjct: 125 NHHFQ-IFADKFDFVKITKALKFIEGTHNFFAFTSE-TQPKNFSKTIFQASLKETVHKYI 182 Query: 192 VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVD 251 + N F+ +M+R +VGSL+E+G + +L A A A+ L L + Sbjct: 183 LVFHGNGFLKYMIRFLVGSLIEIGKNKFSLEQFQAMLLGNKTKKATLLAPAKALVLKKIF 242 Query: 252 Y 252 Y Sbjct: 243 Y 243 >UniRef50_A6FXP9 Pseudouridylate synthase n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6FXP9_9DELT Length = 285 Score = 245 bits (625), Expect = 1e-63, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 134/281 (47%), Gaps = 32/281 (11%) Query: 12 IALGIEYDGSKYYGWQRQNEV----RSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 + L + YDG+ ++G+ RQ+ R++Q LE+ALS + +PI A RTDAGVH G Sbjct: 3 MLLRVAYDGTDFHGFARQDNGGQPLRTIQGCLEQALSTLYKQPIRTRGASRTDAGVHARG 62 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVP----DDFHARFSATARRYRYIIY 123 Q+V F+ LG+ ANLP DI + + RF + YRY + Sbjct: 63 QLVAFDPPFAIPARGLLLGLAANLPADIIASAAWLAEDVEGEPLNPRFHTRGKLYRYRLR 122 Query: 124 NHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINV 183 LR + ++ H P+D M AA G +DF FRA CQ+++ R V + V Sbjct: 123 PVSLRDPLSARYEWHLPRPIDVAAMQAAAPRFAGTHDFAGFRASDCQAKSTTRRVRSVIV 182 Query: 184 TRHG--------------------PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESW 223 V +D++ +AF+ +MVR +VG+L+ VG Sbjct: 183 NVETLAELDPLAGQRGRIEGPAAPARVTIDVRGDAFLKNMVRIMVGTLVGVGRGQFGAER 242 Query: 224 IAELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDLPKPPMG 264 I E+LA+ DRT A TA A GL LV V +P+ P PP G Sbjct: 243 IDEVLASGDRTRAGVTAPACGLTLVEVLWPE----PWPPSG 279 >UniRef50_D2VLE9 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VLE9_NAEGR Length = 430 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 66/271 (24%), Positives = 99/271 (36%), Gaps = 35/271 (12%) Query: 3 DQQQPPVYKIALGIEYDGSKYYGWQRQNEVR-SVQEKLEKALSQVANEP----ITVFCAG 57 D IAL I Y G Y G +Q +++ L +AL + G Sbjct: 61 DWSTQTYRHIALKIAYLGFNYQGLSKQLHTPNTIEHHLFEALKTLKLIEHEDNCEFTKCG 120 Query: 58 RTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARR 117 RTD GV GQVV F K + +N+ LP DI V V DF ARF R Sbjct: 121 RTDKGVSALGQVVSFNCRYNPKKNDYVRLINSLLPDDIRVLAWCPVSKDFDARFGCLQRT 180 Query: 118 YRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRN 177 Y+Y + L+ E+M +AA +GE+DF +F + + R Sbjct: 181 YKYYF----------------IRQNLNIEKMKQAAAHFVGEHDFRNFCKINEEVTNFRRR 224 Query: 178 VMHINVTRHG------------PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIA 225 ++ + + + + + +F+ H VR + L +G + S I Sbjct: 225 ILSMEIIKSDLLHQQHGNDEYFEIYEIVVCGTSFLWHQVRCMTAILFLIGEGKEEPSVIP 284 Query: 226 ELLAAKDRTLAA--ATAKAEGLYLVAVDYPD 254 ELL + A L L + D Sbjct: 285 ELLDIEKYKARPVYHIASEFPLVLYDCVFED 315 >UniRef50_C2BS51 Pseudouridylate synthase n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BS51_9ACTO Length = 297 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 92/273 (33%), Positives = 132/273 (48%), Gaps = 30/273 (10%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 +I L I YDG+ ++GW Q + +VQ LE AL+ + + + + AGRTDAGVH +GQV Sbjct: 2 RIRLDIRYDGTPFHGWAAQPGLPTVQGALESALTVIYRQTVELTVAGRTDAGVHASGQVA 61 Query: 71 HFETT----ALRKDAAWTLGVNANL-------------------PGD----IAVRWVKTV 103 HF + + A L P + + V V Sbjct: 62 HFTVPEVGDRIVSPDTLAPRLGAVLRAVLSGNLASPLPDSPAAYPPNAIDALVVTAATVV 121 Query: 104 PDDFHARFSATARRYRYIIYNH-RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFT 162 P+ F ARFSA AR Y Y I + R + + LDA M+ +A LLGE+DF Sbjct: 122 PETFDARFSALARHYVYRIVDDLAARNPLSRNCCWWYPTQLDAAAMNTSAAVLLGEHDFA 181 Query: 163 SFRAVQCQSRTPWRNVMHINVTRHGP-YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPE 221 +F + + T R + + R P + + ++A+AF H MVR++VG+L EVG + Sbjct: 182 AFCKPR-EGATTIRTLQQLETLRTAPGMMEIRVRADAFCHSMVRSLVGALTEVGRAKRDT 240 Query: 222 SWIAELLAAKDRTLAAATAKAEGLYLVAVDYPD 254 +W+A+ LAAK R A A GL L VDYP Sbjct: 241 AWLADALAAKARIPEIPVAPALGLTLTQVDYPQ 273 >UniRef50_C6HVK9 Pseudouridylate synthase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVK9_9BACT Length = 294 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 78/271 (28%), Positives = 108/271 (39%), Gaps = 12/271 (4%) Query: 1 MSDQQQPP--VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGR 58 M PP +IAL + YDG + GWQ Q +VQ L +AL+ + P+ V +GR Sbjct: 1 MEGPLSPPATSRRIALLLAYDGRDFSGWQVQPNRWTVQGTLGEALATLCRAPVGVTGSGR 60 Query: 59 TDAGVHGTGQVVHFETTA--LRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATAR 116 TDAGV GQV H + +N LPG + V ++V FHAR SA + Sbjct: 61 TDAGVSAWGQVAHADLPEGFSIPVDRLPRILNTRLPGSLRVLDCRSVSSSFHARHSARGK 120 Query: 117 RYRYII---YNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRT 173 YRY+ + + R A+ LG +DF F Sbjct: 121 IYRYVFRHLPASLSHHPLATPFSAPLPPNFFLPRAREASTFFLGTHDFRHFSVASSLPDD 180 Query: 174 PWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLA--AK 231 R + I +++ + F+H MVR I G L+E G +P I LL A Sbjct: 181 STRRIDGILWEERCAELILWVTGPGFLHKMVRMIGGYLLEAGEGRRPLEEIPALLRKGAP 240 Query: 232 DRTLAAATAKAEGLYLVAVDYPDRYDLPKPP 262 A +GL L V Y + P P Sbjct: 241 PPFRAVEPLPPDGLALARVLYDND---PFDP 268 >UniRef50_B3EQM8 Pseudouridylate synthase n=1 Tax=Chlorobium phaeobacteroides BS1 RepID=B3EQM8_CHLPB Length = 233 Score = 243 bits (620), Expect = 6e-63, Method: Composition-based stats. Identities = 81/240 (33%), Positives = 119/240 (49%), Gaps = 8/240 (3%) Query: 14 LGIEYDGSKYYGWQRQN-EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHF 72 + IEYDG+ + GWQ+Q V +VQ LE LS++ E + + AGRTD GVH GQV +F Sbjct: 1 MTIEYDGTDFSGWQKQPEGVVTVQGVLETTLSRIVQEEVVMTAAGRTDRGVHARGQVANF 60 Query: 73 ETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVL 132 T + +NA LP + +R ++ VPD FHAR+SA R YRY A+ Sbjct: 61 RTASCLSTGRLLHSLNALLPSTVCIRDMQEVPDSFHARYSALFREYRYFFL--EKPSALG 118 Query: 133 SKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV 192 + + LD +R++R A L+G +DF+++ Q+ + + V + R VV Sbjct: 119 KRYAGVYGGRLDVDRLNRCAGELVGRHDFSAYAKEDAQNGSTFCTVFGASWGRQDEKVVF 178 Query: 193 DIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVDY 252 I AN F+ MVR +V + +E G E L + A GL+L V Y Sbjct: 179 RIAANRFLRTMVRFLVSAQLEAGPGELT-----ERLRRGNVLKNIVPADPAGLFLWKVLY 233 >UniRef50_Q6AD25 tRNA pseudouridine synthase A n=9 Tax=Bacteria RepID=TRUA_LEIXX Length = 288 Score = 242 bits (619), Expect = 8e-63, Method: Composition-based stats. Identities = 91/280 (32%), Positives = 128/280 (45%), Gaps = 27/280 (9%) Query: 1 MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALS---QVANEPITVFCAG 57 M+DQ + L I Y G+ + GW RQ ++R+VQ LE+AL+ + + EP ++ AG Sbjct: 1 MTDQA----TRFRLDIAYQGTDFAGWARQPDLRTVQGTLEEALATIFRCSGEPPSLTVAG 56 Query: 58 RTDAGVHGTGQVVHFET---------------TALRKDAAWTLGVNANLPG--DIAVRWV 100 RTDAGVH TGQV H + A VN L D+ V Sbjct: 57 RTDAGVHATGQVAHVDLSPEQVALLRRPHGKREPQLAHDALKRRVNGVLGPVPDVLVSRA 116 Query: 101 KTVPDDFHARFSATARRYRYIIYNH-RLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGEN 159 P F ARFSA RRY Y + + LR + LD + M R A +LG + Sbjct: 117 TEAPAGFDARFSALWRRYEYRVADRIALRDPLQRHRTAWVPNTLDVDAMDRGAHGMLGLH 176 Query: 160 DFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVV-DIKANAFVHHMVRNIVGSLMEVGAHN 218 DF S+ + + T R + + R V++ ++ A+AF H MVR +VG+ +EVG Sbjct: 177 DFASYCKAR-EGATTIRTLQAFSWRRDAEGVLLGEVAADAFCHSMVRALVGACVEVGEGK 235 Query: 219 QPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDL 258 + L + RT A A GL L V YP +L Sbjct: 236 LRPGDLVTLRDERQRTSAFKVMPARGLTLREVGYPVDAEL 275 >UniRef50_B8JBC1 Pseudouridylate synthase n=4 Tax=Anaeromyxobacter RepID=B8JBC1_ANAD2 Length = 272 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 90/260 (34%), Positives = 115/260 (44%), Gaps = 18/260 (6%) Query: 8 PVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTG 67 AL + YDG ++ G+QRQ + +VQ+ LE+AL + + A RTDAGVH Sbjct: 2 ERRSYALRLAYDGGRFRGFQRQPGLPTVQQALEEALER-LGVRAQLHVAARTDAGVHALA 60 Query: 68 QVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 QVV F A A G+N LP I V V FHAR SA AR Y Y++ Sbjct: 61 QVVSFSARAALDPVALRGGLNEGLPEGILVLDAARVGPSFHARGSAIARTYVYLV--GAP 118 Query: 128 RPAVLSKGVTHFYE-----------PLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWR 176 P L + PLDA M A +GE+DF F Q T R Sbjct: 119 PPVGLRPYAWTLPDARAFPDLAEVPPLDAAAMREALGHAVGEHDFVGFARPGEQRGT-VR 177 Query: 177 NVMHINVTRHG--PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRT 234 ++ V G P V V ++ F+ MVRN+VG+ + G P I LLA + R Sbjct: 178 TLLRAEVIEAGWAPLVAVVLEGKGFLRAMVRNLVGTAVAAGLGRAPPDVIRTLLATRGRY 237 Query: 235 LAAATAKAEGLYLVAVDYPD 254 A GL L AV YPD Sbjct: 238 R-GVRAPGWGLTLAAVRYPD 256 >UniRef50_UPI0001C30ED3 tRNA pseudouridine synthase A n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C30ED3 Length = 261 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 83/242 (34%), Positives = 115/242 (47%), Gaps = 6/242 (2%) Query: 13 ALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEP-ITVFCAGRTDAGVHGTGQVVH 71 L +EYDG + GW RQ R+V++ LE+AL+ V + + AGRTDAGVH Q Sbjct: 9 RLTLEYDGRDFAGWARQPGRRTVEDALERALATVLRRDAVGLTVAGRTDAGVHAWAQEAS 68 Query: 72 FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAV 131 +E +NA LP D+AV + P F AR AT+R YRY + R R A Sbjct: 69 YEGPPAAP-----HRLNALLPDDVAVIDARPAPPGFSARHDATSRAYRYRVLVRRSRSAH 123 Query: 132 LSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVV 191 + LD + + A L G +DFT+F + R VMH + G + Sbjct: 124 ERGRALWWPHRLDRDALDACAAALAGTHDFTAFTPTETDHVRFQREVMHASWRADGDMLQ 183 Query: 192 VDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAVD 251 I+A+AF+ +M R +VG+++EV + LL R A TA GLYL V Sbjct: 184 FSIEADAFMRNMNRVLVGTMLEVAGERRSVEQFTALLDGAPRDRAGVTAPPHGLYLAGVG 243 Query: 252 YP 253 Y Sbjct: 244 YD 245 >UniRef50_A6Q408 Pseudouridylate synthase n=2 Tax=unclassified Epsilonproteobacteria RepID=A6Q408_NITSB Length = 241 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 71/244 (29%), Positives = 111/244 (45%), Gaps = 6/244 (2%) Query: 11 KIALGIEYDGSKYYGWQRQNE-VRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 +I I YDGS++ G+Q Q +V L AL +V + +GRTD GVH T QV Sbjct: 2 RIKAVISYDGSRFDGFQIQKHTANTVMHHLYNALQRV-GIESKIVGSGRTDKGVHATAQV 60 Query: 70 VHFETTALRKD-AAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 +HF+ + +N +L I ++ V VP +FHAR+SA R YRY++ Sbjct: 61 IHFDLPPFWSELERLQNLLNESLRPYIQIKRVVKVPKEFHARYSAKRRAYRYLLKKSE-P 119 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + + H LD E + R G +DF F +++ R + + Sbjct: 120 SVFENAYLHHVS-NLDIEIIKRNISLFEGRHDFRYFMKTGSDTKSSVRRIFKTALYEKDD 178 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 V+ + + F+ +R IVG+L+++G I + LA K R + A GLYL Sbjct: 179 LYVLYFEGDGFLRAQIRLIVGALIKLGKGELKPEQIIDQLACKARY-TSTLAPPNGLYLC 237 Query: 249 AVDY 252 + Y Sbjct: 238 KIIY 241 >UniRef50_B6H2I9 Pc13g14530 protein n=1 Tax=Penicillium chrysogenum Wisconsin 54-1255 RepID=B6H2I9_PENCW Length = 548 Score = 240 bits (613), Expect = 4e-62, Method: Composition-based stats. Identities = 76/300 (25%), Positives = 102/300 (34%), Gaps = 50/300 (16%) Query: 3 DQQQPPVYKIALGIEYDGSKYYGWQRQNE----VRSVQEKLEKALSQVANEP-------- 50 D + IAL Y G Y G + N + +V+E L KAL + Sbjct: 108 DPSKYSTRFIALKFAYLGQAYNGLEHTNGNTTPLPTVEEVLWKALRRTRLISPETTSDLE 167 Query: 51 -------------------ITVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANL 91 AGRTD GV GQV+ + + +N L Sbjct: 168 PSDRAERVPMRPYHLYWDGCEYSKAGRTDKGVSAFGQVIGLRVRT--DEMNYINVLNRVL 225 Query: 92 PGDIAVRWVKT-VPDDFHARFSATARRYRYIIYNHRLRPAVLS------------KGVTH 138 P DI V P F ARFS RRY+Y N P S Sbjct: 226 PEDIRVLAWCPNPPPGFDARFSCRERRYKYFFTNPAFSPTPGSIGFQNRAQNGNGPRAEF 285 Query: 139 FYEPLDAERMHRAAQCLLGENDFTSFRAVQC--QSRTPWRNVMHINVTRHGPYVVVDIKA 196 LD E M AA+ G +DF +F + Q R + H ++ Sbjct: 286 REGWLDIEAMREAAKHFEGSHDFRNFCKLDTNKQIDNFERIIHHSISQSIPQVYSFNLHG 345 Query: 197 NAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE--GLYLVAVDYPD 254 +AF+ H VR++V L VG + S + ELL A A+ L L +PD Sbjct: 346 SAFLWHQVRHMVAILFLVGQGLESPSIVPELLDVAKNPRKPTYAMADDAPLVLWDCIFPD 405 >UniRef50_D1C2N5 Pseudouridylate synthase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C2N5_SPHTD Length = 271 Score = 240 bits (612), Expect = 6e-62, Method: Composition-based stats. Identities = 94/262 (35%), Positives = 123/262 (46%), Gaps = 15/262 (5%) Query: 10 YKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQV 69 + + YDGS ++G QRQ VR+VQ LE A ++A EP V AGRTD GVH GQV Sbjct: 8 RTFRVDLGYDGSAFFGSQRQPGVRTVQGALESAAERLAGEPTRVALAGRTDRGVHAVGQV 67 Query: 70 VHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRP 129 R + A P D+ V + V + FHARFSA R YRY ++ + P Sbjct: 68 ASLRIRWARSADELARALMALTPDDLVVYGAREVDERFHARFSARWREYRYFVWEGPV-P 126 Query: 130 AVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSR----TPWRNVMHINVT- 184 ++ V PL+ M+ AA +G DF + R V Sbjct: 127 TLMRGRVWVVRTPLNLAAMNAAADAFIGRRDFAAVAGAGVGVPWSGIDTTRTVSLARWRI 186 Query: 185 ---------RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTL 235 R G + I+A+ F+ HMVRNIVGSL+ VG ++P W ELLA +DR Sbjct: 187 VDQPFERHDRSGRLLEFRIRADGFLPHMVRNIVGSLVAVGRGDRPIGWTEELLAGRDRRR 246 Query: 236 AAATAKAEGLYLVAVDYPDRYD 257 A A A+GL L V Y D D Sbjct: 247 GEAPAPAQGLVLWRVAYDDDPD 268 >UniRef50_Q6NKP7 Pseudouridylate synthase n=14 Tax=Embryophyta RepID=Q6NKP7_ARATH Length = 372 Score = 239 bits (611), Expect = 6e-62, Method: Composition-based stats. Identities = 83/323 (25%), Positives = 131/323 (40%), Gaps = 72/323 (22%) Query: 3 DQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAG 62 + P V + + IEY G+++ G Q+Q + R+V L++A + +P+ +FC+ RTDAG Sbjct: 48 NPVNPRVQRYLVAIEYIGTRFSGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAG 107 Query: 63 VHGTGQVVHFETTA-----------LRKDAAWTLGVNANLP---GDIAVRWVKTVPDDFH 108 VH V H + + VN L GD+ V V+ VP ++H Sbjct: 108 VHALSNVCHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYH 167 Query: 109 ARFSATARRYRYIIYNHRLR-PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAV 167 AR+ A R Y Y + + + H E L+ M A + L+G +DF+SFRA Sbjct: 168 ARYKAQERTYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQEACRVLVGSHDFSSFRAA 227 Query: 168 QCQSRTPWRNVMHINVTRHGPYVVV----------------------------------- 192 CQ+++P R++ +N+T Sbjct: 228 GCQAKSPMRSLDELNITEVPSTPYFPSITERTLSNLNNGDPLACSNQPKSETAGVTTNVG 287 Query: 193 DIKAN----------------------AFVHHMVRNIVGSLMEVGAHNQPESWIAELLAA 230 +++ + F++H VR IVG+L VG S + +L A Sbjct: 288 EVEGSTGGDSFGRRRRHRCYVVTARSRGFLYHQVRLIVGALKCVGTGELTVSDVERILEA 347 Query: 231 KDRTLAAATAKAEGLYLVAVDYP 253 K + A A A GLYL V Y Sbjct: 348 KTVSAAKPMAPASGLYLARVRYE 370 >UniRef50_D1AVW7 Pseudouridylate synthase n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AVW7_STRM9 Length = 244 Score = 239 bits (611), Expect = 7e-62, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 108/243 (44%), Gaps = 1/243 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I + +YDGS +YG QRQ + +VQ +E L NE + + +GRTD GVH Q Sbjct: 1 MNNIKIIYQYDGSAFYGSQRQKDKVTVQGTIEDILINSFNEKVNMISSGRTDRGVHAKMQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V +F K + I + ++ V +++RF R Y +I+ N Sbjct: 61 VSNFIINKDIKLDIIKSKIEKYSNYAIKILSIEKVDIKYNSRFDCMERTYEFILSNRENI 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAV-QCQSRTPWRNVMHINVTRHG 187 K +T +D E+++ + +G+++F++F ++ P R + + Sbjct: 121 TPFNRKYITSINYEIDVEKLNDILKQFIGKHNFSNFSKKENKANKNPIREIYECYSIKKD 180 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 + + IK N+F+ MVR I+G+ + + + + +I E + GLYL Sbjct: 181 KNIHIYIKGNSFLKSMVRIIIGTTLAIYSGKISKHFIKEAFDNPNPNTKKYILDGNGLYL 240 Query: 248 VAV 250 V Sbjct: 241 YHV 243 >UniRef50_A0B7V0 tRNA pseudouridine synthase A n=1 Tax=Methanosaeta thermophila PT RepID=TRUA_METTP Length = 267 Score = 238 bits (608), Expect = 1e-61, Method: Composition-based stats. Identities = 86/244 (35%), Positives = 119/244 (48%), Gaps = 20/244 (8%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 KIAL I Y G +YYG+QRQ +R+V+ + AL ++ AGRTD GV GQV+ Sbjct: 2 KIALKIAYLGDRYYGFQRQPGLRTVESVMRDALLRIGVANGDFCYAGRTDRGVSALGQVI 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 F R A+ +N+ LP D+ P F AR+SA R YRY + Sbjct: 62 DFWIEEDRAYLAFPRVINSLLPSDVWAWARAVAPVGFSARWSALWREYRYFL-------- 113 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 F +D + AA L+G +DF +F + + R ++ I+V H V Sbjct: 114 --------FSPDIDLSAVREAAGHLVGTHDFRNFSMSKVDT---VRRIISIDVNAHCGIV 162 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 V D++A F+ +MVR IVG+L +G +P WI ELL A TA EGL L+ V Sbjct: 163 VFDVRAEGFIWNMVRRIVGALELIGIGEKPVDWILELLD-PSTPHGAPTAPPEGLMLMDV 221 Query: 251 DYPD 254 Y D Sbjct: 222 GYSD 225 >UniRef50_C9RMQ6 Pseudouridylate synthase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMQ6_FIBSS Length = 250 Score = 238 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 82/252 (32%), Positives = 116/252 (46%), Gaps = 10/252 (3%) Query: 11 KIALGIEYDGSKYYGWQRQN-----EVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHG 65 + EY GS +YGWQ QN +VQ LE+ALS PI V +GRTD GVH Sbjct: 2 RYRFRCEYLGSAFYGWQEQNCGGKLRFVTVQSTLEEALSTALRAPIRVVGSGRTDTGVHA 61 Query: 66 TGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNH 125 GQ VHF+ VN I +R ++ DF+AR+ A R Y+Y I+ Sbjct: 62 RGQCVHFDFDGELDPQKVVRSVNGLTKRLIRIRDLEPCASDFNARYDAVLRYYQYTIFTR 121 Query: 126 RLRPAVLSKGVTHFYE-PLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT 184 + A++ LD E M R AQ LGE+DF F + ++ + + Sbjct: 122 PV--ALMRDFGWECGSLNLDIEAMGREAQSFLGEHDFIDFCIPRNDGKSTLCTLSEFRLE 179 Query: 185 RHGPY-VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAE 243 R + + IK N F+H VR +VG+L +VG PE + ++ K+ A + Sbjct: 180 RLNDWSCMFHIKGNRFLHRQVRAMVGTLFDVGRGRYPEGTVNQIFE-KNFKGERTWAPPQ 238 Query: 244 GLYLVAVDYPDR 255 GL L V+Y D Sbjct: 239 GLVLENVEYRDY 250 >UniRef50_C5WYL0 Pseudouridylate synthase n=3 Tax=Andropogoneae RepID=C5WYL0_SORBI Length = 459 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 67/276 (24%), Positives = 108/276 (39%), Gaps = 42/276 (15%) Query: 5 QQPPVYKIALGIEYDGSKYYGWQRQNEV-RSVQEKLEKALSQV-----ANEPITVFCAGR 58 P +AL + Y G ++YG+ + +V+ ++ KAL + + + GR Sbjct: 117 SHCPKRLVALKVMYFGQRFYGFSSEGNTEPTVESEIFKALERAKLMVGSRKESCYSRCGR 176 Query: 59 TDAGVHGTGQVVHFETTALRK-----------DAAWTLGVNANLPGDIAVRWVKTVPDDF 107 TD GV TGQV+ + K + + +N LP DI V VP DF Sbjct: 177 TDKGVSATGQVISLYLRSNIKDVGGDMLDERSEIDYVKVLNRILPRDIRVLGWCPVPADF 236 Query: 108 HARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAV 167 HARF+ +R Y+Y+ + LD M +AA +GE+DF +F + Sbjct: 237 HARFTCLSREYKYLFW----------------KGDLDILEMQKAASKFIGEHDFRNFCKM 280 Query: 168 Q-CQSRTPWRNVMHINV------TRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQP 220 R + + + + + IK +AF+ H VR +V L +G + Sbjct: 281 DAANVSNYRRRITEFTISACDRRSNNDELCSMMIKGSAFLWHQVRCMVAVLFLIGQGLES 340 Query: 221 ESWIAELLAAKD--RTLAAATAKAEGLYLVAVDYPD 254 S + LL R A L L + + Sbjct: 341 PSVVDSLLDITKTPRKPQYKMAPELPLILRSCLFDK 376 >UniRef50_B6WBX6 Pseudouridylate synthase n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6WBX6_9FIRM Length = 242 Score = 236 bits (603), Expect = 6e-61, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 106/222 (47%), Gaps = 1/222 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + I L I+YDGS + G+Q Q + R+VQ++LE+A+ +V E + +GRTD+GVH Sbjct: 3 IQNILLKIQYDGSLFEGFQIQKDKRTVQKELEEAIRKVTGEKNRIIASGRTDSGVHANEM 62 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V+F T + + + LP DI K V +FHARFS + Y+Y+I ++ Sbjct: 63 YVNFLTAKDIRADKFHFHLKKYLPADILALSSKKVDKNFHARFSVKTKTYKYVISLEKIL 122 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFR-AVQCQSRTPWRNVMHINVTRHG 187 + + LD +++ + + L GE+DF +F + + R + Sbjct: 123 HPIYRNYMEQITYKLDFDKLKQGMEILKGEHDFRAFMLSEKNDIINTIRKIDDCYYILDN 182 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLA 229 + + KA +F+H+ VR + GSL+E+ Sbjct: 183 NILFLYFKAESFLHNQVRIMAGSLIELSRGKISLDDFKFYFD 224 >UniRef50_D1YY68 Pseudouridylate synthase n=1 Tax=Methanocella paludicola SANAE RepID=D1YY68_METPS Length = 279 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 85/245 (34%), Positives = 126/245 (51%), Gaps = 21/245 (8%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKAL--SQVANEPITVFCAGRTDAGVHGTGQ 68 K+A + Y G+ + G Q Q R+V+ +L K L + E V +GRTDAGVH GQ Sbjct: 14 KVAFKLAYVGTDFSGSQSQPGRRTVEGELRKGLVEKGIIGEKTKVEFSGRTDAGVHALGQ 73 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 V+ F +N+ LP D+ V VPDDF R A +R YRY++Y Sbjct: 74 VIAFV--PKNDKLTEPRIINSVLPADMWVYAKAVVPDDFDPRRHAVSRTYRYLLY---AP 128 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 + + VT+ +Q G +DFT+F +V+ + P R V I+VT+ G Sbjct: 129 DVIERRIVTY-------------SQLFPGTHDFTNFSSVEPN-KNPVRTVKSISVTKRGD 174 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 V+DI+A++F+ +MVR IV L VG++ +P WI ++L + A A GLYL+ Sbjct: 175 MYVIDIEADSFLWNMVRKIVTGLRLVGSNKRPAQWIEQMLKPDEYREGIPPALAAGLYLM 234 Query: 249 AVDYP 253 V+YP Sbjct: 235 KVEYP 239 >UniRef50_B5Y955 tRNA pseudouridine synthase A n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=TRUA_COPPD Length = 259 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 74/252 (29%), Positives = 117/252 (46%), Gaps = 2/252 (0%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + K A +++ G+ Y G+QRQ ++Q LE LSQ+ N V +GRTDAGVH G Sbjct: 1 MVKYAGLLQFKGTNYAGFQRQKNGTAIQNVLESTLSQINNRATVVRYSGRTDAGVHAWGM 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 F W +N LP D+ V V +F + SA A++Y Y RL Sbjct: 61 PFVFWGREDLSADKWMFILNRMLPKDMRVISVVRTSPEFDPQLSAVAKQYLYCATQERLG 120 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 P ++ + AA+ L+GE+DF F ++ R + ++V Sbjct: 121 PLWDDFFAYLPNLSIETSAVISAARKLVGEHDFKGFSKKGSSVKSTRRKLYEVSVMFTHS 180 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + N F++ MVR +VG+L+++G Q ++I E+L+ +A +A A+GL+LV Sbjct: 181 RMYFSFVGNGFLYGMVRLMVGTLLQIGWGKQDVNFIDEVLSG--NAVANYSAPAQGLHLV 238 Query: 249 AVDYPDRYDLPK 260 V L Sbjct: 239 KVWLEPDPFLES 250 >UniRef50_B1ZVD8 Pseudouridylate synthase n=2 Tax=Opitutaceae RepID=B1ZVD8_OPITP Length = 268 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 78/243 (32%), Positives = 119/243 (48%), Gaps = 2/243 (0%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + YDG + GWQ Q SVQ+ +E L ++ + + +GRTDAGVH GQV Sbjct: 10 RWKCVCAYDGGHFAGWQSQVSGASVQDAIEARLREMFGREVRIHGSGRTDAGVHALGQVF 69 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+ + A LP I ++ V V +FHARF A+ +RY Y ++ Sbjct: 70 HFDAHWRHGPEKLLAALRARLPSAIQIKTVCAVTPEFHARFQASGKRYTYRLHLGD-ADP 128 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRA-VQCQSRTPWRNVMHINVTRHGPY 189 + PLD M+ AA L G +DF +F A R++ ++V R G Sbjct: 129 FTRPYSWPVFRPLDLAAMNAAAAVLRGRHDFRAFTALNGPARVDTVRDLRRLDVRRRGRV 188 Query: 190 VVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVA 249 + + +A+ F++ MVR++VG L+ VG + +LA++ RT TA +GL+LV Sbjct: 189 IRIIAEADGFLYKMVRSLVGVLVAVGEGKLTVHDVRAILASRQRTAVVQTAPPQGLFLVR 248 Query: 250 VDY 252 V Y Sbjct: 249 VFY 251 >UniRef50_C7PRM5 Pseudouridylate synthase n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PRM5_CHIPD Length = 250 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 114/244 (46%), Gaps = 3/244 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + + + Y G+ + G+Q Q+ V +VQ ++ A+S + I + RTDAGVH + Sbjct: 2 RYFIEVAYKGTSFGGFQIQDNVETVQSVIDHAISTLMRGAIVTTGSSRTDAGVHARQNFL 61 Query: 71 HFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPA 130 HF+ VNA LP D+ +R + V DD H+RF+A +R Y Y +Y + Sbjct: 62 HFDMEQPLHPQFL-YKVNAILPPDVVMRNIYRVADDAHSRFAALSRSYEYTLYMEK--DP 118 Query: 131 VLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYV 190 + F L E +H AA L +F +F Q +T N+M + Sbjct: 119 FMRDRGYFFPYTLHPELLHEAASVLREYENFMTFSKRNTQVKTYNCNIMSSEWEVGEDRI 178 Query: 191 VVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLVAV 250 V + AN F+ MVR +VG+++ VG E + +++ A +GL+L+ V Sbjct: 179 VYRVTANRFLRGMVRGMVGTMLRVGRGKLTMDGFREAIESRNCVNADFAVPPQGLFLMKV 238 Query: 251 DYPD 254 YP+ Sbjct: 239 AYPE 242 >UniRef50_Q12VJ7 tRNA pseudouridine synthase A n=5 Tax=Archaea RepID=TRUA_METBU Length = 275 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 125/247 (50%), Gaps = 23/247 (9%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVA----NEPITVFCAGRTDAGVHGT 66 ++AL I Y GS ++G Q Q +V+ +L K L ++ +GRTD+GVH Sbjct: 2 RVALKIAYIGSNFHGSQVQLNDPTVEGELFKVLKELGIMEDPRTANFISSGRTDSGVHAM 61 Query: 67 GQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHR 126 GQVV F+T A + A +N+ LPG I VP++F R A +R YRYI+ Sbjct: 62 GQVVAFDTDA--PNLAMPRVINSKLPGTIWAWAHAIVPENFDPRRHALSRSYRYIL---- 115 Query: 127 LRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH 186 + E D ++ A++ LLG +DF++F + +T R V I++ Sbjct: 116 ------------YGEQFDISKIRSASKLLLGSHDFSNFSTSRGSKKT-VRIVKRIDIRVS 162 Query: 187 GPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 246 G +D++AN+F+ +MVR IV +LM VG+ + E W+ +L + A GL Sbjct: 163 GNLTRIDVEANSFLWNMVRKIVAALMMVGSGVRDEEWLGHMLDPESYEEGLEPAHGYGLV 222 Query: 247 LVAVDYP 253 L+ V+YP Sbjct: 223 LMDVNYP 229 >UniRef50_Q9BZE2 tRNA pseudouridine synthase 3 n=20 Tax=Eukaryota RepID=PUS3_HUMAN Length = 481 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 63/292 (21%), Positives = 99/292 (33%), Gaps = 56/292 (19%) Query: 3 DQQQPPVYKIALGIEYDGSKYYGWQRQNEVR-SVQEKLEKALSQV----ANEPITVFCAG 57 D +AL I Y G Y G+ Q +++EKL +AL++ + + G Sbjct: 56 DFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCG 115 Query: 58 RTDAGVHGTGQVVHFETTALRK-------------------DAAWTLGVNANLPGDIAVR 98 RTD GV GQV+ + + + +T +N LP DI + Sbjct: 116 RTDKGVSAFGQVISLDLRSQFPRGRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRIL 175 Query: 99 WVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGE 158 V F ARFS R YRY LD M AAQ +G Sbjct: 176 AWAPVEPSFSARFSCLERTYRYFFPRA----------------DLDIVTMDYAAQKYVGT 219 Query: 159 NDFTSFRAVQCQS--RTPWRNVMHI------------NVTRHGPYVVVDIKANAFVHHMV 204 +DF + + + R ++ ++ AF++H V Sbjct: 220 HDFRNLCKMDVANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQV 279 Query: 205 RNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKA--EGLYLVAVDYPD 254 R ++ L +G + I ELL + + A L L + + Sbjct: 280 RCMMAILFLIGQGMEKPEIIDELLNIEKNPQKPQYSMAVEFPLVLYDCKFEN 331 >UniRef50_P47428 tRNA pseudouridine synthase A n=2 Tax=Mycoplasma RepID=TRUA_MYCGE Length = 244 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 101/247 (40%), Gaps = 4/247 (1%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQ 68 + + + YDGS + GW Q + ++Q LE++ S + I V +GRTD GVH Q Sbjct: 1 MARYLGIVSYDGSYFKGWAIQPNLATIQGLLEQSFSLIIGRKIKVIGSGRTDKGVHAINQ 60 Query: 69 VVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 H + +N + V+ + V D FHARF + Y Y+I L Sbjct: 61 TFHVDINGEINLNLLIRKINQLIKPHCIVKTLVLVNDSFHARFQVKTKVYEYLINCGNL- 119 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRH-G 187 + V + LD E++ A LG+ +F SF + R + I + + Sbjct: 120 NPLQFNYVWQLNQQLDLEKLKADATLFLGKKNFLSFSS--SIHTDSIRTISKITIQKETN 177 Query: 188 PYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYL 247 V + + F+ VR IV L+ + + +A+L + A + GLYL Sbjct: 178 QLVRLTFFGSGFLRSQVRMIVACLVNLNTNKMALETVAKLFEHPKKGSCVVKAPSCGLYL 237 Query: 248 VAVDYPD 254 V Y Sbjct: 238 KTVVYEK 244 >UniRef50_Q2FT01 Pseudouridylate synthase n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FT01_METHJ Length = 276 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 66/265 (24%), Positives = 107/265 (40%), Gaps = 26/265 (9%) Query: 2 SDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFC----AG 57 D + ++A I Y G+ ++G Q Q + R+V+ ++E A + +G Sbjct: 3 EDPGKTSQVRLAFRIGYIGTSFFGSQYQPDQRTVEGEIEAACLRAGIITSRQVSRLALSG 62 Query: 58 RTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARR 117 RTD GVH Q++ + +N LP DI V P+ F+ R+ R Sbjct: 63 RTDRGVHAKCQILAL---STHNPDLAVRALNGQLPPDIWVSAWAYAPESFYPRYDVIIRT 119 Query: 118 YRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRN 177 YRY P D M AA LG +DF F ++ ++P + Sbjct: 120 YRYYFS----------------RPPSDINAMRDAAGLFLGTHDFRCFARIEP-GKSPVKT 162 Query: 178 VMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAA 237 + I V +++ A +F+ HMVR + GSL +V + + L + + Sbjct: 163 IDRIEVISDENGCRLEVTAQSFLWHMVRCMAGSLYQVSEGEMAIRDLTQYLKGECKNKVK 222 Query: 238 ATAKAEGLYLVAVDYP-DRYDLPKP 261 A EGL L V D +++P P Sbjct: 223 P-APPEGLILWDVQADLDWHEIPAP 246 >UniRef50_A2QE34 Catalytic activity: tRNA uridine <=> tRNA pseudouridine n=1 Tax=Aspergillus niger CBS 513.88 RepID=A2QE34_ASPNC Length = 517 Score = 234 bits (598), Expect = 2e-60, Method: Composition-based stats. Identities = 73/283 (25%), Positives = 108/283 (38%), Gaps = 33/283 (11%) Query: 3 DQQQPPVYKIALGIEYDGSKYYGWQRQNE----VRSVQEKLEKALSQVANEP-------- 50 D + IAL Y G +Y G + N + +++E++ KAL + Sbjct: 100 DPSRYNTRFIALKFAYLGQRYNGLEHANGNATPLPTIEEEMYKALRKTRETKPYYINWDG 159 Query: 51 ITVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKT-VPDDFHA 109 AGRTD GV GQV+ + +N LP DI V P+ F A Sbjct: 160 CEYSKAGRTDRGVSAFGQVIGIRVRNELP---YVSMLNKVLPEDIRVLAWCPRPPEGFDA 216 Query: 110 RFSATARRYRYIIYNHRLRPAVLS----------KGVTHFYEPLDAERMHRAAQCLLGEN 159 RFS R Y+Y P + K LD E M +AA+ G + Sbjct: 217 RFSCGERHYKYFFTQPAFSPTPGASGFVPRDGTGKPPKLREGWLDIEAMRKAAKYFEGTH 276 Query: 160 DFTSFRA--VQCQSRTPWRNVMHINVTR---HGPYVVVDIKANAFVHHMVRNIVGSLMEV 214 DF +F V Q + +R++ + V ++ +AF+ H VR++V L V Sbjct: 277 DFRNFCKLDVTKQIESFYRDIFQSSAAPLPTAAQVYVFHLEGSAFLWHQVRHMVNVLFLV 336 Query: 215 GAHNQPESWIAELLAAKD--RTLAAATAKAEGLYLVAVDYPDR 255 G + S + +LL R A L L YPD+ Sbjct: 337 GQGLEEPSIVQDLLDVTKNPRKPTYEMASDAPLVLWDCIYPDK 379 >UniRef50_A8IW91 Pseudouridylate synthase (Fragment) n=1 Tax=Chlamydomonas reinhardtii RepID=A8IW91_CHLRE Length = 239 Score = 234 bits (598), Expect = 2e-60, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 106/235 (45%), Gaps = 14/235 (5%) Query: 12 IALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFC---AGRTDAGVHGTGQ 68 L + YDG+ Y GWQ Q +VQ KLE AL V E V AGRTD+GVH GQ Sbjct: 5 YRLILAYDGTDYCGWQLQPAAPTVQAKLEAALGTVLREDRGVLGVRAAGRTDSGVHARGQ 64 Query: 69 VVH-FETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRL 127 V +NA LP DI V V+ DF S + Y Y I N Sbjct: 65 VRTGLTGRGGLPVDKLAYKLNAVLPPDIRVMGVRRTAPDFSVTCSPIGKTYHYNITNSEA 124 Query: 128 RPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQ-----SRTPWRNVMHIN 182 + + H +PLD M AA L+G +DFT F + + R P + + ++ Sbjct: 125 HDPLRHRYAYHVRKPLDLAGMRAAAALLVGTHDFTQFSNIGEEGGRPRKRNPVKTLRRMD 184 Query: 183 VTRHGP-----YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKD 232 V P V ++++ N F++ MVR+I G L+ VG P ++E+L D Sbjct: 185 VVELDPAAFPGGVRIEVEGNGFLYKMVRHISGVLVAVGERKLPPGIVSEMLEVGD 239 >UniRef50_B2B096 Predicted CDS Pa_3_8390 n=1 Tax=Podospora anserina RepID=B2B096_PODAN Length = 635 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 75/334 (22%), Positives = 116/334 (34%), Gaps = 80/334 (23%) Query: 3 DQQQPPVYKIALGIEYDGSKYYGWQRQN--EVRSVQEKLEKALSQVANE----------- 49 D + IAL + Y G Y G++ V S++E+L KAL + Sbjct: 124 DPSRYSTRLIALKLSYLGKNYGGFEHSGYSNVPSIEEELWKALVKGCLITPADPSKIDFA 183 Query: 50 PITVFCAGRTDAGVHGTGQVVHFETTALRKDA---------------------------- 81 P GRTD GV GQV+ + R + Sbjct: 184 PFEYSKCGRTDRGVSAFGQVISIRVRSNRPPSKSEQPAEEDVVMEGTPEQNNTPQLPGKK 243 Query: 82 ----------------AWTLGVNANLPGDIAVRWVKTV-PDDFHARFSATARRYRYIIYN 124 + +N LP DI V P+ F ARFS R+YRY N Sbjct: 244 QQQNPQKEWEDIVDEINYPKVLNRLLPPDIKVLAWAPTLPEGFSARFSCYERQYRYFFTN 303 Query: 125 HRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAV--QCQSRTPWRNVMHIN 182 + P +L+ G LD M +AA+ G +DF +F V Q + R + + Sbjct: 304 PSMAPTLLAPGEK--SGWLDIAAMKKAAKYFEGLHDFRNFCKVDGGKQITSFQRRIFECD 361 Query: 183 VTR----------------HGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAE 226 + G ++ +AF+ H +R++V + VG + + E Sbjct: 362 IEEVEGQDLGVVNFWGGEKKGKVYYFHVRGSAFLWHQIRHMVAIVFNVGQGLERPEVVRE 421 Query: 227 LLAAKD--RTLAAATAKAEGLYLVAVDYPDRYDL 258 LL + R A+ L L +P R ++ Sbjct: 422 LLDVERNGRKPGYIMAEEVPLVLWDCVFPKRPEI 455 >UniRef50_Q2NHB4 tRNA pseudouridine synthase A n=1 Tax=Methanosphaera stadtmanae DSM 3091 RepID=TRUA_METST Length = 274 Score = 233 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 74/252 (29%), Positives = 113/252 (44%), Gaps = 24/252 (9%) Query: 9 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFC----AGRTDAGVH 64 + ++AL I Y GS ++G+QRQ R+V+ +L + + T AGRTD GVH Sbjct: 1 MRRVALKIAYIGSNFHGYQRQPNYRTVEGELLRVFKETNIIEDTWTAHYSVAGRTDKGVH 60 Query: 65 GTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYN 124 TG V+ F T +N LP DI + VP F RF R Y YI Sbjct: 61 STGNVISFITDEDIH----INQLNGLLPDDIKIIGEARVPYGFKVRF-PLTRTYTYIQPI 115 Query: 125 HRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVT 184 + LD +MH A + +G+++F +F + P R ++ +N+ Sbjct: 116 SPFE-----------KKNLDITKMHVAMESFIGKHNFRNFSKR--NEKNPNRKIIDVNLE 162 Query: 185 RHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAA--ATAKA 242 ++ I +F+ +MVR +V S+MEVG + I ELL K+ A A Sbjct: 163 VDEDVLIFTIVGESFLWNMVRKMVTSIMEVGYGKLDINDINELLKPKELRQFIRLQPAPA 222 Query: 243 EGLYLVAVDYPD 254 GL L ++Y + Sbjct: 223 NGLILSDMEYKN 234 >UniRef50_B0E7N4 Pseudouridylate synthase n=2 Tax=Entamoeba RepID=B0E7N4_ENTDI Length = 366 Score = 233 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 73/281 (25%), Positives = 96/281 (34%), Gaps = 47/281 (16%) Query: 3 DQQQPPVYKIALGIEYDGSKYYGWQRQ-------------NEVRSVQEKLEKALSQ---- 45 + IA+ + Y G Y G Q +++ +L KAL + Sbjct: 29 NFNNYKTRHIAIHLTYIGIDYNGIQCTLLNDVTDSTFDSVVNDGTIEYQLFKALFKTRLI 88 Query: 46 VANEPITVFCAGRTDAGVHGTGQVVHFETTALRKDAAWT-----------LGVNANLPGD 94 + GRTD GV GQVV + KD +N LP D Sbjct: 89 QNTKDCKYNRCGRTDKGVSAFGQVVDLWVRSNLKDETILYTKREGELDYCRMLNGLLPID 148 Query: 95 IAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQC 154 I VPDDF++RFS +R Y Y D +M AAQ Sbjct: 149 IRCLGWCGVPDDFNSRFSCQSRTYHYYFD----------------PSSYDVPKMKEAAQL 192 Query: 155 LLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEV 214 LGE+DFT+F R V V + AFV H VR +VG+L + Sbjct: 193 FLGEHDFTNFCKKDPAVPHCIRRVNSFEVEEINGLSRFVVCGTAFVWHQVRYMVGALFAI 252 Query: 215 GAHNQPESWIAELLAAKDRTLA--AATAKAEGLYLVAVDYP 253 G I +LL + T A A L L Y Sbjct: 253 GQG-ANPESIKQLLDVEHYTKPNYFKYAPAYPLVLYECKYD 292 >UniRef50_A8Z5T1 Pseudouridylate synthase n=4 Tax=Flavobacteriales RepID=A8Z5T1_SULMW Length = 250 Score = 233 bits (594), Expect = 6e-60, Method: Composition-based stats. Identities = 75/245 (30%), Positives = 122/245 (49%), Gaps = 4/245 (1%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + L I Y G+ +YGWQ Q + SVQE +E LS + + I + AGRTD GVH Sbjct: 2 RFFLEISYHGASFYGWQIQKKNISVQETIENCLSFLLKKSIKIIGAGRTDTGVHAIQMFA 61 Query: 71 HFETT--ALRKDAAWTLGVNANLPGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLR 128 HFE + + N+ LP +I + + TV HARF+A +R Y Y I + Sbjct: 62 HFEFYEKKILLYRNFLFKFNSFLPLNIKIINIFTVKKKIHARFTAISRVYEYRISLGKNP 121 Query: 129 PAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRAVQCQSRTPWRNVMHINVTRHGP 188 ++ + + +++ A+ L D++SF +C +T N+ + Sbjct: 122 FSLDISWQWLSKKKIKLNPLNKGAKILKKYKDYSSFCKKKCNYKTYICNIFNAKWHIKNN 181 Query: 189 YVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLYLV 248 + +I+AN ++ +MVR+IVG+L+E+G +L AKDR +A A+GL+L Sbjct: 182 ILYFNIEANRYLRNMVRSIVGTLIELGIGKITIKDFINILYAKDR--NIISAPAKGLFLT 239 Query: 249 AVDYP 253 ++YP Sbjct: 240 KINYP 244 >UniRef50_C7LK25 Pseudouridylate synthase n=2 Tax=Candidatus Sulcia muelleri RepID=C7LK25_SULMS Length = 270 Score = 233 bits (594), Expect = 7e-60, Method: Composition-based stats. Identities = 71/267 (26%), Positives = 121/267 (45%), Gaps = 26/267 (9%) Query: 11 KIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVV 70 + + I Y GS +GWQ Q + S+QE +E LS + + I + AGRTD GVH Sbjct: 2 RFFIEISYKGSSLFGWQIQKKNLSIQETIETCLSFLLKKKIKIIGAGRTDTGVHAIQMFA 61 Query: 71 HFETTALRK------------------------DAAWTLGVNANLPGDIAVRWVKTVPDD 106 HF+ T + + +N+ LP +I + + +V + Sbjct: 62 HFDLTFDLTFDLTFDLTFDLTFDLTFDLTKNHINNHFKSKLNSFLPLNIKIINIFSVKKN 121 Query: 107 FHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRA 166 HARF+A +R Y Y I + + ++ + + + A L DF+SF Sbjct: 122 IHARFNAISRVYEYRISLSKDPFLFQTSWQWLSKNQIELKILKKGANILKKYKDFSSFCK 181 Query: 167 VQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAE 226 + + + + I+AN F+ +MVR++VG+L+E+G + Sbjct: 182 EKSKK--NLCEISTAKWILKKNILYFRIEANRFLRNMVRSLVGTLIELGIKKITIKDFIK 239 Query: 227 LLAAKDRTLAAATAKAEGLYLVAVDYP 253 ++ AK+R LA TA A+GL+L+ ++YP Sbjct: 240 IIEAKNRNLAGITAPAKGLFLIKINYP 266 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.164 0.523 Lambda K H 0.267 0.0502 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,987,522,485 Number of Sequences: 3077464 Number of extensions: 90583019 Number of successful extensions: 218317 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1427 Number of HSP's successfully gapped in prelim test: 222 Number of HSP's that attempted gapping in prelim test: 212148 Number of HSP's gapped (non-prelim): 2080 length of query: 270 length of database: 1,040,396,356 effective HSP length: 126 effective length of query: 144 effective length of database: 652,635,892 effective search space: 93979568448 effective search space used: 93979568448 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 93 (40.1 bits)