Phyre 2 alignment of P25666 with c1syxF_

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Job Description | P25666
Confidence | 6.18% | Date | Thu Jan 5 11:42:14 GMT 2012
Rank | 27 | Aligned Residues | 34
% Identity | 21% | Template | c1syxF_
PDB info | PDB header:translation/immune system | Chain: F: PDB Molecule:cd2 antigen cytoplasmic tail-binding protein 2; | PDBTitle: the crystal structure of a binary u5 snrnp complex
Resolution | 2.35 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 134 | . | . | . | . | . | 140 | . |  | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | . | . | . | . | 160 | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | M | G | L | V | K | T | P | L | . | V | A | W | I | D | F | G | Y | C | H | K | P | N | V | . | . | . | . | . | . | . | . | . | . | T | R | G | L | K | I | W | D | F | P | F | D
Query Conservation |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | Y | G | P | F | T | S | A | Q | M | Q | T | W | V | S | E | G | Y | F | P | D | G | V | Y | C | R | K | L | D | P | P | G | G | Q | F | Y | N | S | K | R | I | D | F | D | L | Y
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |  | T | T |  |  |  |  |  |  | S | S | S | T | T |  |  |  |  |  | G | G | G |  |  | G | G | G | G
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 41 | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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