Phyre 2 alignment of P25666 with c2ld7B_

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Job Description | P25666
Confidence | 3.07% | Date | Thu Jan 5 11:42:14 GMT 2012
Rank | 85 | Aligned Residues | 41
% Identity | 27% | Template | c2ld7B_
PDB info | PDB header:transcription | Chain: B: PDB Molecule:paired amphipathic helix protein sin3a; | PDBTitle: solution structure of the msin3a pah3-sap30 sid complex
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 215 | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 |  | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | Y | K | L | V | L | E | S | Q | K | I | T | L | N | N | N | I | . | V | D | D | D | Q | G | I | F | V | M | C | Y | Y | K | R | P | D | L | F | N | L | N | Y | L | G | R | G | K | W | F | D | L | F
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |
Template Sequence |  | Y | E | N | F | L | R | C | L | V | I | F | N | Q | E | V | I | S | R | A | E | L | V | Q | L | V | S | P | F | L | G | K | F | P | E | L | F | . | . | . | . | . | . | . | . | N | W | F | K | N | F
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |  | S |  |  |  |  |  |  |  |  | T |  |  |  |  | T | T |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 481 | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . |  |  |  |  |  |  |  |  | . | . | . | 520 | . | .

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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