Phyre 2 Results for P25666

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Email | l.a.kelley@imperial.ac.uk
Description | P25666
Date | Thu Jan 5 11:42:14 GMT 2012
Unique Job ID | 1724f93ca40c9247

Summary |

Top model
Image coloured by rainbow N → C terminus
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Model (left) based on template c2xsbA_
Top template information
PDB header:hydrolase Chain: A: PDB Molecule:hyaluronoglucosaminidase; PDBTitle: ogoga pugnac complex
Confidence and coverage
Confidence: | 65.2% | Coverage: | 13%
36 residues ( 13% of your sequence) have been modelled with 65.2% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | K | S | S | T | T | I | I | T | A | Y | F | D | I | G | R | G | D | W | T | A | N | K | G | F | R | E | K | L | A | R | S | V | D | V | Y | F | S | Y | F | E | R | L | A | A | L | E | N | E | M | I | I | F | T | S | P | D | L | K | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | R | V | E | A | I | R | N | G | K | P | T | T | V | I | V | I | D | I | K | K | K | F | R | Y | I | R | S | R | I | E | K | I | Q | K | D | E | S | F | T | N | R | L | E | P | R | Q | L | K | N | P | E | Y | W | S | P | E | Y | V | L | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | C | N | L | K | A | Y | F | V | N | K | A | I | N | M | G | L | V | K | T | P | L | V | A | W | I | D | F | G | Y | C | H | K | P | N | V | T | R | G | L | K | I | W | D | F | P | F | D | E | S | K | M | H | L | F | T | I | K | K | G | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | T | V | T | S | Q | Q | Q | V | F | D | F | M | I | G | N | H | V | Y | I | I | G | G | A | I | V | G | S | Q | H | K | W | K | E | F | Y | K | L | V | L | E | S | Q | K | I | T | L | N | N | N | I | V | D | D | D | Q | G | I | F | V | M
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | .
Sequence |  | C | Y | Y | K | R | P | D | L | F | N | L | N | Y | L | G | R | G | K | W | F | D | L | F | R | C | F | R | S | N | T | L | G | A | K | M | Q | A | L | R | I | F | L | S | R | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2xsbA_ |

### PDB 2xsb chain A

Region: 7 - 57
Aligned: 36
Modelled: 51
Confidence: 65.2%
Identity: 28%
PDB header:hydrolase
Chain: A: PDB Molecule:hyaluronoglucosaminidase;
PDBTitle: ogoga pugnac complex

Phyre2
2 |
| d2i4ra1 |

### PDB 2i4r chain A domain 1

Region: 42 - 95
Aligned: 54
Modelled: 53
Confidence: 44.1%
Identity: 11%
Fold: AtpF-like
Superfamily: AtpF-like
Family: AtpF-like

Phyre2
3 |
| d2cbia2 |

### PDB 2cbi chain A domain 2

Region: 15 - 57
Aligned: 30
Modelled: 30
Confidence: 35.8%
Identity: 13%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: alpha-D-glucuronidase/Hyaluronidase catalytic domain

Phyre2
4 |
| c2cbjA_ |

### PDB 2cbj chain A

Region: 7 - 80
Aligned: 57
Modelled: 74
Confidence: 20.9%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:hyaluronidase;
PDBTitle: structure of the clostridium perfringens nagj family 842 glycoside hydrolase, a homologue of human o-glcnacase in3 complex with pugnac

Phyre2
5 |
| c2k0mA_ |

### PDB 2k0m chain A

Region: 194 - 247
Aligned: 52
Modelled: 54
Confidence: 19.8%
Identity: 17%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: solution nmr structure of the uncharacterized protein from2 rhodospirillum rubrum gene locus rru_a0810. northeast3 structural genomics target rrr43

Phyre2
6 |
| c3tp9B_ |

### PDB 3tp9 chain B

Region: 13 - 53
Aligned: 41
Modelled: 41
Confidence: 19.5%
Identity: 20%
PDB header:hydrolase
Chain: B: PDB Molecule:beta-lactamase and rhodanese domain protein;
PDBTitle: crystal structure of alicyclobacillus acidocaldarius protein with2 beta-lactamase and rhodanese domains

Phyre2
7 |
| d1lzia_ |

### PDB 1lzi chain A

Region: 196 - 231
Aligned: 36
Modelled: 36
Confidence: 19.2%
Identity: 19%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: alpha-1,3-galactosyltransferase-like

Phyre2
8 |
| c1wv9B_ |

### PDB 1wv9 chain B

Region: 166 - 205
Aligned: 39
Modelled: 40
Confidence: 18.9%
Identity: 13%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:rhodanese homolog tt1651;
PDBTitle: crystal structure of rhodanese homolog tt1651 from an2 extremely thermophilic bacterium thermus thermophilus hb8

Phyre2
9 |
| c3fq6A_ |

### PDB 3fq6 chain A

Region: 29 - 77
Aligned: 48
Modelled: 49
Confidence: 16.3%
Identity: 13%
PDB header:transferase
Chain: A: PDB Molecule:methyltransferase;
PDBTitle: the crystal structure of a methyltransferase domain from bacteroides2 thetaiotaomicron vpi

Phyre2
10 |
| c2choA_ |

### PDB 2cho chain A

Region: 15 - 57
Aligned: 30
Modelled: 29
Confidence: 13.6%
Identity: 20%
PDB header:hydrolase
Chain: A: PDB Molecule:glucosaminidase;
PDBTitle: bacteroides thetaiotaomicron hexosaminidase with o-2 glcnacase activity

Phyre2
11 |
| c2xe4A_ |

### PDB 2xe4 chain A

Region: 218 - 257
Aligned: 40
Modelled: 40
Confidence: 12.4%
Identity: 28%
PDB header:hydrolase/inhibitor
Chain: A: PDB Molecule:oligopeptidase b;
PDBTitle: structure of oligopeptidase b from leishmania major

Phyre2
12 |
| d1jaka1 |

### PDB 1jak chain A domain 1

Region: 11 - 78
Aligned: 56
Modelled: 56
Confidence: 10.6%
Identity: 29%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: beta-N-acetylhexosaminidase catalytic domain

Phyre2
13 |
| d1i0ea1 |

### PDB 1i0e chain A domain 1

Region: 187 - 218
Aligned: 32
Modelled: 32
Confidence: 10.5%
Identity: 22%
Fold: Guanido kinase N-terminal domain
Superfamily: Guanido kinase N-terminal domain
Family: Guanido kinase N-terminal domain

Phyre2
14 |
| c1ph4A_ |

### PDB 1ph4 chain A

Region: 11 - 56
Aligned: 35
Modelled: 46
Confidence: 10.4%
Identity: 14%
PDB header:dna binding protein/dna
Chain: A: PDB Molecule:telomere-binding protein alpha subunit;
PDBTitle: crystal structure of the oxytricha nova telomere end-binding protein2 complexed with noncognate ssdna ggggttttggcg

Phyre2
15 |
| c1jb7A_ |

### PDB 1jb7 chain A

Region: 11 - 56
Aligned: 35
Modelled: 46
Confidence: 10.4%
Identity: 14%
PDB header:dna-binding protein/dna
Chain: A: PDB Molecule:telomere-binding protein alpha subunit;
PDBTitle: dna g-quartets in a 1.86 a resolution structure of an oxytricha nova2 telomeric protein-dna complex

Phyre2
16 |
| c1qfmA_ |

### PDB 1qfm chain A

Region: 218 - 257
Aligned: 40
Modelled: 40
Confidence: 9.3%
Identity: 20%
PDB header:hydrolase
Chain: A: PDB Molecule:protein (prolyl oligopeptidase);
PDBTitle: prolyl oligopeptidase from porcine muscle

Phyre2
17 |
| d1r8se_ |

### PDB 1r8s chain E

Region: 209 - 284
Aligned: 73
Modelled: 76
Confidence: 8.5%
Identity: 21%
Fold: alpha-alpha superhelix
Superfamily: Sec7 domain
Family: Sec7 domain

Phyre2
18 |
| d1bc9a_ |

### PDB 1bc9 chain A

Region: 209 - 284
Aligned: 73
Modelled: 76
Confidence: 8.1%
Identity: 22%
Fold: alpha-alpha superhelix
Superfamily: Sec7 domain
Family: Sec7 domain

Phyre2
19 |
| c1yr2A_ |

### PDB 1yr2 chain A

Region: 218 - 257
Aligned: 40
Modelled: 40
Confidence: 7.1%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:prolyl oligopeptidase;
PDBTitle: structural and mechanistic analysis of two prolyl endopeptidases: role2 of inter-domain dynamics in catalysis and specificity

Phyre2
20 |
| d1g0wa1 |

### PDB 1g0w chain A domain 1

Region: 187 - 225
Aligned: 39
Modelled: 39
Confidence: 6.9%
Identity: 15%
Fold: Guanido kinase N-terminal domain
Superfamily: Guanido kinase N-terminal domain
Family: Guanido kinase N-terminal domain

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2xsbA_ |
|  | 65.2 | 28 | PDB header:hydrolase Chain: A: PDB Molecule:hyaluronoglucosaminidase; PDBTitle: ogoga pugnac complex
2 | d2i4ra1 |
|  | 44.1 | 11 | Fold:AtpF-like Superfamily:AtpF-like Family:AtpF-like
3 | d2cbia2 |
|  | 35.8 | 13 | Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:alpha-D-glucuronidase/Hyaluronidase catalytic domain
4 | c2cbjA_ |
|  | 20.9 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:hyaluronidase; PDBTitle: structure of the clostridium perfringens nagj family 842 glycoside hydrolase, a homologue of human o-glcnacase in3 complex with pugnac
5 | c2k0mA_ |
|  | 19.8 | 17 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of the uncharacterized protein from2 rhodospirillum rubrum gene locus rru_a0810. northeast3 structural genomics target rrr43
6 | c3tp9B_ |
|  | 19.5 | 20 | PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase and rhodanese domain protein; PDBTitle: crystal structure of alicyclobacillus acidocaldarius protein with2 beta-lactamase and rhodanese domains
7 | d1lzia_ |
|  | 19.2 | 19 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:alpha-1,3-galactosyltransferase-like
8 | c1wv9B_ |
|  | 18.9 | 13 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:rhodanese homolog tt1651; PDBTitle: crystal structure of rhodanese homolog tt1651 from an2 extremely thermophilic bacterium thermus thermophilus hb8
9 | c3fq6A_ |
|  | 16.3 | 13 | PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: the crystal structure of a methyltransferase domain from bacteroides2 thetaiotaomicron vpi
10 | c2choA_ |
|  | 13.6 | 20 | PDB header:hydrolase Chain: A: PDB Molecule:glucosaminidase; PDBTitle: bacteroides thetaiotaomicron hexosaminidase with o-2 glcnacase activity
11 | c2xe4A_ |
|  | 12.4 | 28 | PDB header:hydrolase/inhibitor Chain: A: PDB Molecule:oligopeptidase b; PDBTitle: structure of oligopeptidase b from leishmania major
12 | d1jaka1 |
|  | 10.6 | 29 | Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-N-acetylhexosaminidase catalytic domain
13 | d1i0ea1 |
|  | 10.5 | 22 | Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain
14 | c1ph4A_ |
|  | 10.4 | 14 | PDB header:dna binding protein/dna Chain: A: PDB Molecule:telomere-binding protein alpha subunit; PDBTitle: crystal structure of the oxytricha nova telomere end-binding protein2 complexed with noncognate ssdna ggggttttggcg
15 | c1jb7A_ |
|  | 10.4 | 14 | PDB header:dna-binding protein/dna Chain: A: PDB Molecule:telomere-binding protein alpha subunit; PDBTitle: dna g-quartets in a 1.86 a resolution structure of an oxytricha nova2 telomeric protein-dna complex
16 | c1qfmA_ |
|  | 9.3 | 20 | PDB header:hydrolase Chain: A: PDB Molecule:protein (prolyl oligopeptidase); PDBTitle: prolyl oligopeptidase from porcine muscle
17 | d1r8se_ |
|  | 8.5 | 21 | Fold:alpha-alpha superhelix Superfamily:Sec7 domain Family:Sec7 domain
18 | d1bc9a_ |
|  | 8.1 | 22 | Fold:alpha-alpha superhelix Superfamily:Sec7 domain Family:Sec7 domain
19 | c1yr2A_ |
|  | 7.1 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:prolyl oligopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl endopeptidases: role2 of inter-domain dynamics in catalysis and specificity
20 | d1g0wa1 |
|  | 6.9 | 15 | Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain
21 | c2dcqA_ |
| not modelled | 6.8 | 14 | PDB header:unknown function Chain: A: PDB Molecule:putative protein at4g01050; PDBTitle: fully automated nmr structure determination of the2 rhodanese homology domain at4g01050(175-295) from3 arabidopsis thaliana
22 | d1u6ra1 |
| not modelled | 6.7 | 13 | Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain
23 | d1okta2 |
| not modelled | 6.6 | 33 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione S-transferase (GST), N-terminal domain
24 | d2choa2 |
| not modelled | 6.4 | 19 | Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:alpha-D-glucuronidase/Hyaluronidase catalytic domain
25 | d1qh4a1 |
| not modelled | 6.2 | 13 | Fold:Guanido kinase N-terminal domain Superfamily:Guanido kinase N-terminal domain Family:Guanido kinase N-terminal domain
26 | d1syxb1 |
| not modelled | 6.2 | 21 | Fold:GYF/BRK domain-like Superfamily:GYF domain Family:GYF domain
27 | c1syxF_ |
| not modelled | 6.2 | 21 | PDB header:translation/immune system Chain: F: PDB Molecule:cd2 antigen cytoplasmic tail-binding protein 2; PDBTitle: the crystal structure of a binary u5 snrnp complex
28 | d2r09a1 |
| not modelled | 6.2 | 22 | Fold:alpha-alpha superhelix Superfamily:Sec7 domain Family:Sec7 domain
29 | d2i09a2 |
| not modelled | 5.9 | 50 | Fold:DeoB insert domain-like Superfamily:DeoB insert domain-like Family:DeoB insert domain-like
30 | d1e7ua4 |
| not modelled | 5.5 | 25 | Fold:Protein kinase-like (PK-like) Superfamily:Protein kinase-like (PK-like) Family:Phoshoinositide 3-kinase (PI3K), catalytic domain
31 | c3ktsA_ |
| not modelled | 5.4 | 14 | PDB header:transcriptional regulator Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein; PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365
32 | d1or7a2 |
| not modelled | 5.3 | 14 | Fold:Sigma2 domain of RNA polymerase sigma factors Superfamily:Sigma2 domain of RNA polymerase sigma factors Family:Sigma2 domain of RNA polymerase sigma factors
33 | d2gjxa1 |
| not modelled | 5.2 | 20 | Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-N-acetylhexosaminidase catalytic domain

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0