297 c1vmaA_ Probab=98.06   E-value=3e-05  Score=55.05  Aligned_columns=139  Identities=22%

Q ss_pred             HCCCEEEEECCCCCCHHHHHHHHH------CCCCCCCCCCC-----------------------CCCCCEEEEEEE----
Q ss_conf             128779998398799989999985------68743305768-----------------------773220699999----
Q batch____       214 REGMKVVIAGRPNAGKSSLLNALA------GREAAIVTDIA-----------------------GTTRDVLREHIH----  260 (454)
Q Consensus       214 ~~gi~I~ivG~pnaGKSSLiN~L~------~~~~a~Vs~~~-----------------------gtT~d~~~~~~~----  260 (454)
                      ..+-.|+++|+||+||||.+-.|+      |..+..++--+                       .+..|+...-.+    
T Consensus        90 ~~~~vi~~~Gp~G~GKTTt~aklA~~~~~~g~~v~li~~D~~R~gA~eQL~~~a~~~~v~~~~~~~~~~~~~~~~~~~~~  169 (294)
T c1vmaA_          90 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH  169 (294)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHH
T ss_conf             89669999806887602489999999996799489997587686479999999976198289748836989999999999


Q ss_pred             --ECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH-----CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             --89989999975883566405889999999998853-----89899998489858988899889988752028968999
Q batch____       261 --IDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ-----ADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVV  333 (454)
Q Consensus       261 --~~g~~i~l~DTpG~~~~~~~~e~~~~~~~~~~~~~-----aDlil~VvDas~~~~~~~~~~~~~~~~~~~~~~piIiV  333 (454)
                        ..++.+.|+|||| +...+.....-..........     .|.+++|+|++...     ............-.+.-++
T Consensus       170 ~~~~~~d~IlIDTaG-r~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~-----~~~~~~~~~~~~~~~~~iI  243 (294)
T c1vmaA_         170 ALARNKDVVIIDTAG-RLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ-----NGLVQAKIFKEAVNVTGII  243 (294)
T ss_dssp             HHHTTCSEEEEEECC-CCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH-----HHHHHHHHHHHHSCCCEEE
T ss_pred             HHHCCCCEEEECCCC-CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCH-----HHHHHHHHHHHCCCCCEEE
T ss_conf             997799899981888-9878579999999999996303566885399981146878-----9999999996308997699


Q ss_pred             EECCC---CCCHHHHHHHHCCCCEEEEE
Q ss_conf             87677---78857766630799789986
Q batch____       334 RNKAD---ITGETLGMSEVNGHALIRLS  358 (454)
Q Consensus       334 ~NK~D---l~~~~~~~~~~~~~~~i~iS  358 (454)
                      +||.|   ....-..+....+.|+.+++
T Consensus       244 lTKlDe~~~~G~~l~~~~~~~~Pi~~i~  271 (294)
T c1vmaA_         244 LTKLDGTAKGGITLAIARELGIPIKFIG  271 (294)
T ss_dssp             EECGGGCSCTTHHHHHHHHHCCCEEEEE
T ss_pred             EECCCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf             9744478855799999998579889996