BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (752 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P43702 DNA topoisomerase 4 subunit A n=115 Tax=Bacteria... 1100 0.0 UniRef50_Q9HUK1 DNA topoisomerase 4 subunit A n=318 Tax=Proteoba... 1053 0.0 UniRef50_C8NBL7 Topoisomerase IV subunit A n=1 Tax=Cardiobacteri... 826 0.0 UniRef50_A5EV71 DNA topoisomerase IV, A subunit n=2 Tax=Gammapro... 748 0.0 UniRef50_A0Q573 DNA topoisomerase IV subunit A n=34 Tax=Bacteria... 743 0.0 UniRef50_A4JTQ2 DNA topoisomerase IV subunit A n=34 Tax=Proteoba... 628 e-178 UniRef50_P48374 DNA topoisomerase 4 subunit A n=17 Tax=Betaprote... 603 e-171 UniRef50_C5CST5 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Vari... 568 e-160 UniRef50_A1TLU5 DNA topoisomerase IV subunit A n=22 Tax=Betaprot... 567 e-160 UniRef50_A0L827 DNA topoisomerase IV subunit A n=1 Tax=Magnetoco... 546 e-153 UniRef50_Q21V46 DNA topoisomerase IV subunit A n=83 Tax=Bacteria... 545 e-153 UniRef50_Q59749 DNA topoisomerase 4 subunit A n=64 Tax=Alphaprot... 535 e-150 UniRef50_Q1RGX8 DNA topoisomerase 4 subunit A n=15 Tax=Rickettsi... 530 e-149 UniRef50_C5JAG1 DNA topoisomerase IV subunit A n=1 Tax=unculture... 528 e-148 UniRef50_C5SLW9 DNA topoisomerase IV, A subunit n=1 Tax=Asticcac... 525 e-147 UniRef50_C6XHT3 DNA topoisomerase IV subunit A n=27 Tax=Alphapro... 516 e-144 UniRef50_B4W7D2 DNA topoisomerase IV, A subunit n=1 Tax=Brevundi... 510 e-143 UniRef50_A8LLG0 DNA topoisomerase IV, A subunit n=23 Tax=Alphapr... 505 e-141 UniRef50_O54478 DNA topoisomerase 4 subunit A n=18 Tax=Alphaprot... 501 e-140 UniRef50_D0B2I0 DNA topoisomerase IV subunit A n=40 Tax=Rhizobia... 493 e-137 UniRef50_D0HVU0 Topoisomerase IV subunit A n=3 Tax=Vibrio RepID=... 470 e-131 UniRef50_Q5HJZ0 DNA gyrase subunit A n=200 Tax=Bacteria RepID=GY... 459 e-127 UniRef50_P0C0R0 DNA gyrase subunit A n=296 Tax=cellular organism... 459 e-127 UniRef50_A3VFM2 DNA topoisomerase IV, A subunit n=11 Tax=Alphapr... 447 e-124 UniRef50_D0RNU6 DNA gyrase subunit A n=1 Tax=alpha proteobacteri... 443 e-122 UniRef50_Q0W7S4 Type II DNA topoisomerase II (Gyrase), subunit A... 440 e-121 UniRef50_D1JED8 DNA gyrase subunit A n=1 Tax=uncultured archaeon... 438 e-121 UniRef50_B5Y886 DNA gyrase, A subunit n=1 Tax=Coprothermobacter ... 434 e-120 UniRef50_D1B8A6 DNA gyrase, A subunit n=1 Tax=Thermanaerovibrio ... 432 e-119 UniRef50_B8CZP0 DNA gyrase, A subunit n=5 Tax=Bacteria RepID=B8C... 427 e-118 UniRef50_P05653 DNA gyrase subunit A n=10 Tax=cellular organisms... 426 e-117 UniRef50_O33926 DNA gyrase subunit A n=8 Tax=Thermotogaceae RepI... 426 e-117 UniRef50_C9KLW4 DNA gyrase, A subunit n=1 Tax=Mitsuokella multac... 425 e-117 UniRef50_C8WIN1 DNA gyrase, A subunit n=39 Tax=Bacteria RepID=C8... 424 e-117 UniRef50_Q9ZLD9 DNA gyrase subunit A n=50 Tax=Campylobacterales ... 420 e-116 UniRef50_Q1D9G9 Type II DNA topoisomerase, A subunit n=3 Tax=Myx... 420 e-115 UniRef50_B8CXA6 DNA gyrase subunit A n=1 Tax=Halothermothrix ore... 420 e-115 UniRef50_A9F3U1 DNA gyrase subunit A n=3 Tax=Myxococcales RepID=... 417 e-115 UniRef50_Q9RT53 DNA gyrase, subunit A n=2 Tax=Bacteria RepID=Q9R... 416 e-114 UniRef50_C4UA00 DNA topoisomerase 4 subunit A n=9 Tax=Bacteria R... 414 e-114 UniRef50_C6XXU9 DNA gyrase, A subunit n=14 Tax=Bacteria RepID=C6... 414 e-114 UniRef50_P41513 DNA gyrase subunit A n=98 Tax=Bacteria RepID=GYR... 413 e-113 UniRef50_B8FW91 DNA gyrase, A subunit n=2 Tax=Desulfitobacterium... 413 e-113 UniRef50_C6HYH3 DNA gyrase, A subunit n=1 Tax=Leptospirillum fer... 412 e-113 UniRef50_D1AVF2 DNA gyrase, A subunit n=1 Tax=Streptobacillus mo... 408 e-112 UniRef50_B5RLZ1 DNA gyrase, subunit A n=5 Tax=Borrelia RepID=B5R... 407 e-111 UniRef50_Q55738 DNA gyrase subunit A n=43 Tax=cellular organisms... 406 e-111 UniRef50_C7H1V9 DNA gyrase, A subunit n=3 Tax=Clostridiales RepI... 403 e-110 UniRef50_Q1IH79 DNA gyrase subunit A n=5 Tax=Bacteria RepID=Q1IH... 403 e-110 UniRef50_P48372 DNA gyrase subunit A n=78 Tax=Bacteria RepID=GYR... 401 e-110 UniRef50_A6CC19 Type II DNA topoisomerase, A subunit n=3 Tax=Pla... 401 e-110 UniRef50_Q2IHQ4 DNA gyrase subunit A n=15 Tax=cellular organisms... 401 e-110 UniRef50_C1EGN9 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 400 e-109 UniRef50_Q2S2H4 Type II DNA topoisomerase, A subunit n=2 Tax=Rho... 399 e-109 UniRef50_C9M5P0 DNA gyrase, A subunit n=1 Tax=Jonquetella anthro... 399 e-109 UniRef50_A8UVW0 DNA gyrase A subunit n=1 Tax=Hydrogenivirga sp. ... 397 e-109 UniRef50_C0R046 DNA gyrase subunit A n=2 Tax=Brachyspira RepID=C... 396 e-108 UniRef50_D1N7T7 DNA gyrase, A subunit n=1 Tax=Victivallis vadens... 396 e-108 UniRef50_C5CCL2 DNA topoisomerase IV subunit A n=41 Tax=Actinoba... 396 e-108 UniRef50_Q7UU73 DNA gyrase subunit A n=1 Tax=Rhodopirellula balt... 396 e-108 UniRef50_Q5YLB5 DNA gyrase subunit A, chloroplastic/mitochondria... 395 e-108 UniRef50_D0SBV6 Type IIA topoisomerase n=3 Tax=Gammaproteobacter... 395 e-108 UniRef50_C6RQR3 DNA gyrase, A subunit n=3 Tax=Moraxellaceae RepI... 394 e-108 UniRef50_D1Y742 DNA gyrase, A subunit n=1 Tax=Pyramidobacter pis... 394 e-108 UniRef50_C1TNA3 DNA gyrase subunit A n=1 Tax=Dethiosulfovibrio p... 393 e-107 UniRef50_O51396 DNA gyrase subunit A n=18 Tax=Borrelia burgdorfe... 392 e-107 UniRef50_Q8DPM2 DNA gyrase subunit A n=213 Tax=Bacteria RepID=GY... 392 e-107 UniRef50_P57277 DNA gyrase subunit A n=76 Tax=Proteobacteria Rep... 392 e-107 UniRef50_Q4A7J5 DNA gyrase subunit A n=5 Tax=Mycoplasma hyopneum... 392 e-107 UniRef50_P22446 DNA gyrase subunit A n=3 Tax=Mycoplasma RepID=GY... 390 e-107 UniRef50_B0MRF5 Putative uncharacterized protein n=2 Tax=Clostri... 390 e-106 UniRef50_A7HL65 DNA gyrase, A subunit n=4 Tax=Thermotogaceae Rep... 389 e-106 UniRef50_Q114B8 DNA topoisomerase IV subunit A n=4 Tax=Cyanobact... 389 e-106 UniRef50_O67108 DNA gyrase subunit A n=2 Tax=Aquificaceae RepID=... 389 e-106 UniRef50_C8PS29 DNA gyrase, A subunit n=1 Tax=Treponema vincenti... 388 e-106 UniRef50_Q0SRA9 DNA gyrase/topoisomerase IV, A subunit family pr... 387 e-106 UniRef50_Q89AS3 DNA gyrase subunit A n=11 Tax=Proteobacteria Rep... 386 e-105 UniRef50_D2REE0 DNA gyrase, A subunit n=3 Tax=Archaeoglobaceae R... 386 e-105 UniRef50_P48371 DNA gyrase subunit A n=482 Tax=cellular organism... 385 e-105 UniRef50_Q1RID9 DNA gyrase subunit A n=218 Tax=Bacteria RepID=GY... 385 e-105 UniRef50_Q9HJB6 DNA gyrase, subunit A (GyrA) related protein n=5... 385 e-105 UniRef50_B1ZTK3 DNA gyrase, A subunit n=3 Tax=Verrucomicrobia Re... 384 e-105 UniRef50_C5B4N9 DNA gyrase subunit A n=1 Tax=Methylobacterium ex... 384 e-105 UniRef50_Q2JY71 Type II DNA topoisomerase, A subunit n=10 Tax=Cy... 383 e-104 UniRef50_B9ZEE7 DNA gyrase, A subunit n=1 Tax=Natrialba magadii ... 383 e-104 UniRef50_A9NF72 DNA topoisomerase IV, subunit A n=1 Tax=Acholepl... 382 e-104 UniRef50_A8G5D2 DNA gyrase/topoisomerase IV, subunit A n=16 Tax=... 382 e-104 UniRef50_P48354 DNA gyrase subunit A n=46 Tax=Bacteria RepID=GYR... 382 e-104 UniRef50_B0S912 DNA gyrase subunit A n=6 Tax=Leptospira RepID=B0... 382 e-104 UniRef50_Q2ST76 DNA gyrase, A subunit n=7 Tax=Mollicutes RepID=Q... 381 e-104 UniRef50_C9Z0I9 GyrA-like gyrase subunit n=9 Tax=Actinomycetales... 381 e-104 UniRef50_A1V9C1 DNA gyrase subunit A n=18 Tax=Bacteria RepID=A1V... 381 e-104 UniRef50_D1R591 Putative uncharacterized protein n=1 Tax=Parachl... 381 e-104 UniRef50_A4S991 Predicted protein n=1 Tax=Ostreococcus lucimarin... 380 e-103 UniRef50_Q5MZD4 DNA gyrase A subunit n=8 Tax=Cyanobacteria RepID... 379 e-103 UniRef50_B2RJ49 DNA gyrase A subunit n=17 Tax=Bacteria RepID=B2R... 379 e-103 UniRef50_O84192 DNA gyrase subunit A n=16 Tax=Bacteria RepID=GYR... 379 e-103 UniRef50_C6X523 DNA gyrase subunit A n=20 Tax=Bacteria RepID=C6X... 378 e-103 UniRef50_Q2NJM2 DNA gyrase subunit A n=5 Tax=Candidatus Phytopla... 377 e-103 UniRef50_C8PKZ3 DNA gyrase, A subunit n=2 Tax=Campylobacter RepI... 377 e-102 UniRef50_Q2GCH4 DNA gyrase, A subunit n=2 Tax=Neorickettsia RepI... 376 e-102 UniRef50_B7KIH9 DNA topoisomerase (ATP-hydrolyzing) n=6 Tax=Cyan... 376 e-102 UniRef50_C6XJ15 DNA gyrase, A subunit n=28 Tax=Bacteria RepID=C6... 375 e-102 UniRef50_P35810 DNA gyrase subunit A n=1 Tax=Fibrobacter succino... 373 e-101 UniRef50_P47719 DNA gyrase subunit A n=26 Tax=Bacteria RepID=GYR... 373 e-101 UniRef50_A9GW54 DNA gyrase subunit A n=2 Tax=Proteobacteria RepI... 372 e-101 UniRef50_A6DH72 DNA gyrase subunit A n=1 Tax=Lentisphaera araneo... 372 e-101 UniRef50_Q1UZ45 DNA gyrase subunit A n=2 Tax=Candidatus Pelagiba... 372 e-101 UniRef50_Q2JQA2 Type II DNA topoisomerase, A subunit n=2 Tax=Chr... 371 e-101 UniRef50_D1BTH4 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Acti... 371 e-101 UniRef50_Q7V9E4 DNA gyrase/topoisomerase IV, subunit A n=17 Tax=... 370 e-100 UniRef50_Q8CSN8 DNA topoisomerase 4 subunit A n=77 Tax=Bacteria ... 370 e-100 UniRef50_B9ZQ27 DNA gyrase, A subunit n=1 Tax=Thioalkalivibrio s... 369 e-100 UniRef50_A9KS51 DNA topoisomerase (ATP-hydrolyzing) n=4 Tax=Firm... 368 e-100 UniRef50_B5IIX4 DNA gyrase/topoisomerase IV, A subunit domain pr... 368 e-100 UniRef50_B8DTB4 DNA gyrase subunit A n=23 Tax=Actinobacteridae R... 368 e-100 UniRef50_Q2S0H7 DNA gyrase, A subunit n=1 Tax=Salinibacter ruber... 368 e-100 UniRef50_C6CYI7 DNA gyrase, A subunit n=9 Tax=Bacillales RepID=C... 366 1e-99 UniRef50_O83051 DNA gyrase subunit A n=6 Tax=Bacteria RepID=GYRA... 366 2e-99 UniRef50_C7XU56 DNA gyrase, A subunit n=16 Tax=Lactobacillales R... 365 4e-99 UniRef50_B6BPL3 DNA gyrase, A subunit n=3 Tax=Bacteria RepID=B6B... 364 6e-99 UniRef50_B8BXG7 DNA topoisomerase IV, ATP/GTP binding site n=1 T... 363 1e-98 UniRef50_Q2NAD1 Type IIA topoisomeraseA subunit n=30 Tax=Alphapr... 363 2e-98 UniRef50_UPI0001B9EC7F DNA topoisomerase IV, A subunit n=1 Tax=G... 362 3e-98 UniRef50_C7MEZ8 DNA gyrase subunit A n=21 Tax=Actinobacteridae R... 362 3e-98 UniRef50_C3CV72 DNA topoisomerase n=1 Tax=Bacillus thuringiensis... 360 9e-98 UniRef50_Q83G39 DNA gyrase subunit A-like protein n=2 Tax=Trophe... 360 9e-98 UniRef50_C5JAM2 DNA gyrase subunit A n=1 Tax=uncultured bacteriu... 359 3e-97 UniRef50_D0LNR4 DNA gyrase, A subunit n=3 Tax=Bacteria RepID=D0L... 357 1e-96 UniRef50_Q2SS33 DNA topoisomerase IV, A subunit n=5 Tax=Mollicut... 356 2e-96 UniRef50_A2BND1 DNA gyrase/topoisomerase IV, subunit A n=7 Tax=P... 355 3e-96 UniRef50_B3TAI1 Putative DNA gyrase/topoisomerase IV, subunit A ... 353 1e-95 UniRef50_P72525 DNA topoisomerase 4 subunit A n=182 Tax=Firmicut... 353 1e-95 UniRef50_P73077 DNA topoisomerase 4 subunit A n=5 Tax=Bacteria R... 352 2e-95 UniRef50_C8NZH8 DNA topoisomerase IV, A subunit n=1 Tax=Erysipel... 352 3e-95 UniRef50_B5Y5U7 Predicted protein n=1 Tax=Phaeodactylum tricornu... 352 4e-95 UniRef50_Q45066 DNA topoisomerase 4 subunit A n=136 Tax=Firmicut... 350 9e-95 UniRef50_D1C5K4 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Spha... 350 2e-94 UniRef50_D2MM14 DNA topoisomerase IV, A subunit n=2 Tax=Erysipel... 349 2e-94 UniRef50_D2QWS9 DNA gyrase, A subunit n=5 Tax=Planctomycetaceae ... 349 3e-94 UniRef50_C1N3Z1 Predicted protein n=2 Tax=cellular organisms Rep... 348 4e-94 UniRef50_D2LZG6 DNA topoisomerase IV, A subunit n=1 Tax=Bacillus... 345 4e-93 UniRef50_Q98RX7 DNA gyrase A-subunit n=2 Tax=Cryptophyta RepID=Q... 345 5e-93 UniRef50_B5ZBW2 DNA topoisomerase IV, A subunit family protein n... 343 1e-92 UniRef50_C7M119 DNA gyrase, A subunit n=1 Tax=Acidimicrobium fer... 342 3e-92 UniRef50_Q04F36 DNA topoisomerase IV subunit A n=1 Tax=Oenococcu... 341 6e-92 UniRef50_C0ZEN0 DNA topoisomerase IV subunit A n=1 Tax=Brevibaci... 337 8e-91 UniRef50_UPI00016C558B DNA gyrase subunit A n=1 Tax=Gemmata obsc... 335 6e-90 UniRef50_C4Z0V3 DNA gyrase subunit A n=29 Tax=Bacteria RepID=C4Z... 334 9e-90 UniRef50_B9SK06 DNA gyrase subunit A, chloroplast/mitochondrial,... 330 1e-88 UniRef50_Q7NB60 ParC/GyrA n=1 Tax=Mycoplasma gallisepticum RepID... 325 5e-87 UniRef50_C5J6X2 Topoisomerase IV subunit A n=1 Tax=Mycoplasma co... 323 1e-86 UniRef50_B2URM6 DNA gyrase, A subunit n=5 Tax=Verrucomicrobia Re... 322 3e-86 UniRef50_O52166 Topoisomerase IV subunit n=2 Tax=Mycoplasma homi... 322 4e-86 UniRef50_C6WIH8 DNA topoisomerase (ATP-hydrolyzing) n=15 Tax=Act... 322 4e-86 UniRef50_A7AVY4 DNA gyrase A subunit, putative n=5 Tax=cellular ... 321 6e-86 UniRef50_C7H694 DNA gyrase subunit A n=11 Tax=Bacteria RepID=C7H... 321 9e-86 UniRef50_Q98QI8 TOPOISOMERASE IV SUBUNIT A n=1 Tax=Mycoplasma pu... 320 9e-86 UniRef50_Q3QZ99 DNA gyrase C-terminal repeat, beta-propeller n=3... 319 2e-85 UniRef50_B3PLT5 Topoiosmerase IV subunit A n=1 Tax=Mycoplasma ar... 318 4e-85 UniRef50_Q4A6Z3 Topoisomerase IV subunit A n=1 Tax=Mycoplasma sy... 318 4e-85 UniRef50_A7VBP9 Putative uncharacterized protein n=2 Tax=Clostri... 313 2e-83 UniRef50_Q6KHI4 Topoisomerase IV subunit A n=1 Tax=Mycoplasma mo... 310 2e-82 UniRef50_A5IXX2 Topoisomerase IV subunit A n=2 Tax=Mycoplasma Re... 301 8e-80 UniRef50_A6TSS8 DNA topoisomerase (ATP-hydrolyzing) n=7 Tax=Clos... 299 3e-79 UniRef50_P75352 DNA topoisomerase 4 subunit A n=2 Tax=Mycoplasma... 298 7e-79 UniRef50_Q4A8X9 Topoisomerase IV subunit A n=3 Tax=Mycoplasma hy... 295 6e-78 UniRef50_Q4N468 DNA gyrase subunit A, putative n=2 Tax=Theileria... 282 3e-74 UniRef50_UPI0001976864 DNA gyrase/topoisomerase IV, subunit A n=... 278 4e-73 UniRef50_B1BBK7 DNA topoisomerase n=5 Tax=root RepID=B1BBK7_CLOBO 255 4e-66 UniRef50_A4T3N2 DNA gyrase/topoisomerase IV, subunit A n=6 Tax=M... 255 4e-66 UniRef50_Q57532 Mle gyrA intein n=207 Tax=cellular organisms Rep... 253 2e-65 UniRef50_C0QRN3 DNA gyrase subunit A n=9 Tax=cellular organisms ... 250 1e-64 UniRef50_P34030 DNA gyrase subunit A (Fragment) n=704 Tax=Bacter... 239 3e-61 UniRef50_A5K033 DNA GyrAse a-subunit, putative n=2 Tax=Plasmodiu... 238 9e-61 UniRef50_B3LCM1 Dna gyrase a-subunit, putative n=1 Tax=Plasmodiu... 236 2e-60 UniRef50_Q0QCM0 GyrA (Fragment) n=297 Tax=Bacteria RepID=Q0QCM0_... 230 2e-58 UniRef50_Q8I0X3 DNA gyrase subunit A;evidence=inferred from dire... 229 4e-58 UniRef50_UPI0001906031 DNA topoisomerase IV subunit A n=2 Tax=Rh... 198 7e-49 UniRef50_B1PL26 Topoisomerase IV (Fragment) n=184 Tax=cellular o... 186 3e-45 UniRef50_B9XEN7 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=bact... 183 2e-44 UniRef50_C9RLW5 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Fibr... 177 2e-42 UniRef50_Q00TB8 DNA gyrase A subunit (ISS) (Fragment) n=1 Tax=Os... 175 7e-42 UniRef50_B2ZYK7 Type IIA topoisomerase n=1 Tax=Ralstonia phage R... 171 7e-41 UniRef50_C6XSV0 DNA topoisomerase (ATP-hydrolyzing) n=61 Tax=Bac... 169 4e-40 UniRef50_UPI000038387A COG0188: Type IIA topoisomerase (DNA gyra... 166 2e-39 UniRef50_D2QEJ6 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Bact... 166 4e-39 UniRef50_D1QVZ0 DNA topoisomerase 4 subunit A n=2 Tax=Prevotella... 162 5e-38 UniRef50_Q73KU9 Topoisomerase IV, A subunit, putative n=2 Tax=Tr... 159 3e-37 UniRef50_C3JAA3 DNA gyrase subunit A n=3 Tax=Bacteria RepID=C3JA... 159 5e-37 UniRef50_A4CLF9 DNA topoisomerase IV subunit A n=21 Tax=Bacteria... 155 5e-36 UniRef50_D1N6B5 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Bact... 150 3e-34 UniRef50_A6DRS7 DNA topoisomerase IV subunit A n=1 Tax=Lentispha... 149 4e-34 UniRef50_B1ZME1 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Opit... 148 9e-34 UniRef50_O51066 DNA topoisomerase 4 subunit A n=20 Tax=Borrelia ... 146 3e-33 UniRef50_UPI000194EBBC PREDICTED: similar to putative DNA gyrase... 145 5e-33 UniRef50_B4D1N9 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Chth... 145 7e-33 UniRef50_Q1NV80 DNA gyrase/topoisomerase IV, subunit A n=4 Tax=D... 143 3e-32 UniRef50_A8V037 DNA gyrase, A subunit n=1 Tax=Hydrogenivirga sp.... 137 2e-30 UniRef50_C4PNH1 DNA gyrase subunit A n=8 Tax=Chlamydia trachomat... 137 2e-30 UniRef50_Q04PE8 DNA topoisomerase (ATP-hydrolyzing), subunit A n... 129 5e-28 UniRef50_C3GSY0 DNA gyrase subunit A n=3 Tax=Bacillus thuringien... 125 6e-27 UniRef50_Q252N7 DNA gyrase subunit A n=9 Tax=Chlamydiales RepID=... 124 9e-27 UniRef50_A7C399 DNA topoisomerase IV, A subunit n=1 Tax=Beggiato... 123 2e-26 UniRef50_Q76Y98 Gp52 topoisomerase II medium subunit n=1 Tax=Aer... 118 7e-25 UniRef50_P07065 DNA topoisomerase medium subunit n=8 Tax=T4-like... 112 6e-23 UniRef50_C4MZZ9 Gp52 topoisomerase II, medium subunit n=2 Tax=un... 108 8e-22 UniRef50_UPI00016B2480 DNA gyrase subunit A n=1 Tax=candidate di... 92 1e-16 UniRef50_Q6WHM1 Topoisomerase II small subunit n=1 Tax=Vibrio ph... 89 5e-16 UniRef50_Q6U961 Topoisomerase II medium subunit n=3 Tax=unclassi... 89 7e-16 UniRef50_Q56C44 Gp52 DNA topoisomerase subunit n=1 Tax=Enterobac... 87 2e-15 UniRef50_P27570 DNA topoisomerase 2 n=15 Tax=Trypanosomatidae Re... 86 6e-15 UniRef50_P72065 Mxe gyrA intein (Fragment) n=1 Tax=Mycobacterium... 83 4e-14 UniRef50_A7ANB1 DNA topoisomerase 2 n=3 Tax=Piroplasmida RepID=A... 81 1e-13 UniRef50_B9PK68 DNA topoisomerase 2 n=3 Tax=Toxoplasma gondii Re... 80 2e-13 UniRef50_C9S837 DNA topoisomerase 2 n=2 Tax=Sordariomycetes RepI... 80 3e-13 UniRef50_P41001 DNA topoisomerase 2 n=10 Tax=Eukaryota RepID=TOP... 80 3e-13 UniRef50_A5E7X7 DNA topoisomerase 2 n=4 Tax=Saccharomycetaceae R... 80 3e-13 UniRef50_D2UZM0 DNA topoisomerase II n=1 Tax=Naegleria gruberi R... 78 1e-12 UniRef50_D2V5K5 DNA topoisomerase II n=1 Tax=Naegleria gruberi R... 77 2e-12 UniRef50_Q5CQG8 DNA topoisomerase 2 n=4 Tax=Apicomplexa RepID=Q5... 76 4e-12 UniRef50_C0X5K0 Possible DNA topoisomerase IV subunit A (Fragmen... 76 5e-12 UniRef50_C5KAQ6 DNA topoisomerase 2 n=1 Tax=Perkinsus marinus AT... 75 1e-11 UniRef50_A0BK44 Chromosome undetermined scaffold_111, whole geno... 75 1e-11 UniRef50_D2XAH7 DNA topoisomerase II n=1 Tax=Marseillevirus RepI... 73 4e-11 UniRef50_A4HGT2 DNA topoisomerase 2 n=11 Tax=Trypanosomatidae Re... 73 5e-11 UniRef50_UPI0001698ACC DNA topoisomerase IV subunit A n=1 Tax=En... 73 5e-11 UniRef50_Q7YZS4 DNA topoisomerase 2 n=1 Tax=Physarum polycephalu... 72 7e-11 UniRef50_B8C981 DNA topoisomerase 2 (Fragment) n=1 Tax=Thalassio... 72 7e-11 UniRef50_A7TEE2 DNA topoisomerase 2 n=1 Tax=Vanderwaltozyma poly... 71 1e-10 UniRef50_Q6PUA3 DNA topoisomerase 2 n=4 Tax=Tetrahymena thermoph... 70 3e-10 UniRef50_P34534 Putative DNA topoisomerase 2, mitochondrial n=5 ... 70 3e-10 UniRef50_Q55BP5 Probable DNA topoisomerase 2 n=1 Tax=Dictyosteli... 70 3e-10 UniRef50_B3H4G2 DNA topoisomerase 2 n=14 Tax=Magnoliophyta RepID... 70 4e-10 UniRef50_P30182 DNA topoisomerase 2 n=6 Tax=Eukaryota RepID=TOP2... 69 5e-10 UniRef50_D1ZCL6 DNA topoisomerase 2 n=6 Tax=Sordariomyceta RepID... 69 5e-10 UniRef50_C1E5N4 DNA topoisomerase 2 n=1 Tax=Micromonas sp. RCC29... 69 8e-10 UniRef50_O41065 A583L protein n=7 Tax=Chlorovirus RepID=O41065_P... 69 9e-10 UniRef50_Q79BT3 Topoisomerase subunit ParC (Fragment) n=1 Tax=Ne... 68 1e-09 UniRef50_P06786 DNA topoisomerase 2 n=27 Tax=Fungi/Metazoa group... 68 1e-09 UniRef50_A0C0L0 DNA topoisomerase 2 n=3 Tax=Paramecium tetraurel... 67 2e-09 UniRef50_D0MV61 DNA topoisomerase 2 n=2 Tax=Eukaryota RepID=D0MV... 67 2e-09 UniRef50_C7U0P4 DNA topoisomerase II n=2 Tax=unclassified Phycod... 67 3e-09 UniRef50_B7XIW3 DNA topoisomerase 2 n=1 Tax=Enterocytozoon biene... 67 3e-09 UniRef50_P08096 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces ... 67 3e-09 UniRef50_A8PTE9 DNA topoisomerase 2 n=1 Tax=Malassezia globosa C... 67 3e-09 UniRef50_D2TEU4 Putative DNA topoisomerase n=2 Tax=dsDNA viruses... 67 3e-09 UniRef50_P90520 DNA topoisomerase 2, mitochondrial n=1 Tax=Dicty... 66 4e-09 UniRef50_Q9Y8G8 DNA topoisomerase 2 n=79 Tax=cellular organisms ... 66 5e-09 UniRef50_C6LX36 DNA topoisomerase 2 n=3 Tax=Giardia intestinalis... 66 6e-09 >UniRef50_P43702 DNA topoisomerase 4 subunit A n=115 Tax=Bacteria RepID=PARC_HAEIN Length = 747 Score = 1100 bits (2844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 520/728 (71%), Positives = 621/728 (85%), Gaps = 1/728 (0%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 E++ L FTE AYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNA+AK+KKSAR Sbjct: 10 EQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKKSAR 69 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 TVGDVLGK+HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL Sbjct: 70 TVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 129 Query: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 SK SE+LL+ELGQGT D+ PNFDGTL EP+ LPARLP+ILLNGTTGIAVGMATDIPPHN+ Sbjct: 130 SKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPPHNI 189 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245 E+A AA+ L+D PK LD +L+IVQGPD+PTEAEII+ ++EIRKIYE GRGS++MRA W Sbjct: 190 NEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMRATW 249 Query: 246 KKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNR 305 KKEDG ++ISALPHQ S ++V+ QIA QM KKLPM++D+RDE+DHENP R+V+VPRSNR Sbjct: 250 KKEDGEIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIRIVLVPRSNR 309 Query: 306 VDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYR 365 VD D +M HLFATTDLEKSYR+N+NMIGLD +PAVK LLEIL+EWL FRR TV RRL YR Sbjct: 310 VDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRTTVTRRLQYR 369 Query: 366 LEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHL 425 L+KVL RLHILEGL++AFLNIDEVIEIIR+ED+PK LM+RF L++ QA+AIL L+LRHL Sbjct: 370 LDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDEQADAILNLRLRHL 429 Query: 426 AKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREE 485 AKLEE +++ EQ ELEKER L+ IL SER++N L+KKE+Q DA+ Y + R S L EREE Sbjct: 430 AKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYANPRMSQLVEREE 489 Query: 486 AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVF 545 AK +SE DM P+EPVT++LS+MGWVR AKGHDID L+YKAGDS+ A GKSNQ VVF Sbjct: 490 AKMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSYLAHACGKSNQAVVF 549 Query: 546 VDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFV 605 +DSTGRSYA+DP++LPSAR QGEPLTGKL LP GAT+++++M S+ Q+LLMASDAGYGF+ Sbjct: 550 IDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQQELLMASDAGYGFI 609 Query: 606 CTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 665 C F DL+ARN+AGKALI+LPENA V+ P + +++ +++AIT AGRML+FP DLP LSK Sbjct: 610 CKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPVLSK 669 Query: 666 GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRG 725 GKGNK+I IP+A A + L +L ++ Q++L + GKRKI L+PE+LQK ERGR+G Sbjct: 670 GKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYSGKRKIVLKPEDLQKFRAERGRKG 729 Query: 726 -TLMRGLQ 732 TL RGL Sbjct: 730 STLPRGLH 737 >UniRef50_Q9HUK1 DNA topoisomerase 4 subunit A n=318 Tax=Proteobacteria RepID=PARC_PSEAE Length = 754 Score = 1053 bits (2723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 507/739 (68%), Positives = 610/739 (82%), Gaps = 2/739 (0%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 ER +L EFTE AYLNYSMYVIMDRALP IGDGLKPVQRRIVYAMSELGL+A +K KKSAR Sbjct: 13 ERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADSKHKKSAR 72 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 TVGDVLGK+HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE+RL Sbjct: 73 TVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTEARL 132 Query: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 S+YSE+LLSELGQGT DWVPNFDGTL EP +LPARLPN+LLNGTTGIAVGMATD+PPHNL Sbjct: 133 SRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIAVGMATDVPPHNL 192 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245 REVA A + L+DQP T+ +L + V GPD+PTEAEIIT RA+++K+YE GRGSVRMRAV+ Sbjct: 193 REVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYETGRGSVRMRAVY 252 Query: 246 KKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNR 305 + EDG +VI ALPHQVSG++VLEQIA QM+ KKLPMV DLRDESDHENPTR+VI+PRSNR Sbjct: 253 RVEDGDIVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDESDHENPTRIVIIPRSNR 312 Query: 306 VDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYR 365 VD++++M HLFATTDLE SYR+NLN+IGLDG+P VK+L ++LSEWL FR TVRRRL +R Sbjct: 313 VDVEELMTHLFATTDLETSYRVNLNIIGLDGKPQVKDLRQLLSEWLQFRIGTVRRRLQFR 372 Query: 366 LEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHL 425 L+KV +RLH+L+GLL+AFLN+DEVI IIR ED+PK LM RF L+E QA+ IL+ +LR L Sbjct: 373 LDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAVLMERFELSEVQADYILDTRLRQL 432 Query: 426 AKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREE 485 A+LEEMKIRGEQ EL KE+ +LQ +L SE K+ L+++EL DA+ YGDDRRSP+ R E Sbjct: 433 ARLEEMKIRGEQEELLKEQKRLQTLLGSEAKLKKLVREELIKDAETYGDDRRSPIVARAE 492 Query: 486 AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVF 545 A+A+SE +++P+EPVT+VLS+ GWVR AKGHDIDA GL+YKAGD FKAA G+SNQ VF Sbjct: 493 ARALSETELMPTEPVTVVLSEKGWVRCAKGHDIDAAGLSYKAGDGFKAAAPGRSNQYAVF 552 Query: 546 VDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFV 605 +DSTGRSY++ +LPSARGQGEPL+G+LT PPGA+ + +L+ DD ++ASDAGYGFV Sbjct: 553 IDSTGRSYSLPAHSLPSARGQGEPLSGRLTPPPGASFECVLLPDDDALFVIASDAGYGFV 612 Query: 606 CTFNDLVARNRAGKALITLPENAHVMPPVVIEDA-SDMLLAITQAGRMLMFPVSDLPQLS 664 DL A+N+AGKAL++LP + V+ P + D D L A+T GR+L+F VSDLPQL Sbjct: 613 VKGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQDWLAAVTTEGRLLLFKVSDLPQLG 672 Query: 665 KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRR 724 KGKGNKII IP A E+ L L VLP +TL + GKR + L+ ++L+ GERGRR Sbjct: 673 KGKGNKIIGIPGERVASREEYLTDLAVLPAGATLVLQAGKRTLSLKGDDLEHYKGERGRR 732 Query: 725 GT-LMRGLQRIDRVEIDSP 742 G L RG QR+D + +D P Sbjct: 733 GNKLPRGFQRVDSLLVDIP 751 >UniRef50_C8NBL7 Topoisomerase IV subunit A n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NBL7_9GAMM Length = 749 Score = 826 bits (2133), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/739 (54%), Positives = 530/739 (71%), Gaps = 5/739 (0%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + E+ L F E AYL+YSMYVI+DRALP IGDGLKPVQRRI+YAMSELGL+ +K KKS Sbjct: 5 LTEQQPLAGFVEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLSHQSKHKKS 64 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 ARTVGDV+GKYHPHGDSACYEAMVLMAQ F+YRYPLVDGQGNWG+ DDPKSFAAMRYTES Sbjct: 65 ARTVGDVIGKYHPHGDSACYEAMVLMAQDFAYRYPLVDGQGNWGSADDPKSFAAMRYTES 124 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 RL+ Y++ LL+EL QGT +WV NFDGTLQEP LPARLPNILLNG +GIAVGMAT++ PH Sbjct: 125 RLTGYAKTLLAELEQGTVEWVANFDGTLQEPARLPARLPNILLNGGSGIAVGMATNLLPH 184 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL EV A ALI P T D L+ + PD+PT E++++R EI +Y GRG+VR+RA Sbjct: 185 NLGEVVAACRALIADPLLTDDALMQYIPAPDFPTGGELVSAREEIAALYRTGRGAVRLRA 244 Query: 244 VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 W EDG ++I LP+QVSG++V EQIA QM+ KKL ++DLRDESDHE+P RLV+VPRS Sbjct: 245 TWHLEDGNIIIDQLPYQVSGSKVQEQIAKQMQAKKLAWLEDLRDESDHEHPIRLVLVPRS 304 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLN 363 NRVD +++M HLFATTDLEK Y +NMIGLDGRP VKNL +IL EWLV+R +TVRRRLN Sbjct: 305 NRVDHERLMQHLFATTDLEKRYSAQMNMIGLDGRPQVKNLGQILREWLVYREETVRRRLN 364 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLR 423 +RL V +RLHIL+GLL+A+LN+DE+I IIR EDEP+P LM+ F L+E QAEAIL +LR Sbjct: 365 HRLHAVNERLHILQGLLIAYLNLDEIIRIIRTEDEPRPVLMATFALSEAQAEAILNTRLR 424 Query: 424 HLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQER 483 HLA+LEE++IR EQ L E+ L +L S ++ L+ EL ADA YGD RR+ + ER Sbjct: 425 HLARLEEIQIRAEQEALAAEQQHLHELLQSRERLLTLIADELAADAATYGDARRTVIIER 484 Query: 484 EEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPV 543 E A A+ E ++ PSE VT++LS+MGW+R KGH ID L YK GD++ + G+SNQ Sbjct: 485 EAAVALDETELTPSEAVTLILSKMGWIRGGKGHAIDGAALTYKNGDAYLTQISGRSNQQA 544 Query: 544 VFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYG 603 + GRSY + LPSAR GEPL+ +++ A + + +++ L+A+D GYG Sbjct: 545 CLLADNGRSYTLALHGLPSARSYGEPLSSSMSIDASAHIIAAAIIEPERRYLIAADNGYG 604 Query: 604 FVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQL 663 F+ +L ++ ++GK LIT + + + D +LAI+ GR+ + P ++P+L Sbjct: 605 FLIPGAELTSKTKSGKTLITPGGASRAITLQALPDGETDILAISNEGRVALIPAEEIPEL 664 Query: 664 SKGKGNKIINIPSAEAARGEDG--LAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGER 721 +KGKG++ + I A+ DG LA + +P +T+H GK+K+ +R E + R Sbjct: 665 AKGKGSQTLAI--AKKTYDADGIRLAHILAVPRGRDITLHSGKQKLTIRANEREHYLTPR 722 Query: 722 GRRGTLM-RGLQRIDRVEI 739 G +G + + +RID +E+ Sbjct: 723 GHKGNWLPKNYRRIDHIEL 741 >UniRef50_A5EV71 DNA topoisomerase IV, A subunit n=2 Tax=Gammaproteobacteria RepID=A5EV71_DICNV Length = 739 Score = 748 bits (1930), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/740 (52%), Positives = 499/740 (67%), Gaps = 4/740 (0%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + E +L FTE AYL+Y+MYVI+DRALP + DGLKPVQRR+VYAMSELGL+A +K+KKS Sbjct: 3 LEEHYSLAAFTEKAYLDYAMYVILDRALPALADGLKPVQRRLVYAMSELGLSAGSKYKKS 62 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 ARTVGDVLGKYHPHGDSACYEAMVLMAQ FSYRYPL+DGQGNWG+ DDPKSFAAMRYTES Sbjct: 63 ARTVGDVLGKYHPHGDSACYEAMVLMAQNFSYRYPLIDGQGNWGSADDPKSFAAMRYTES 122 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 +L+ Y+ LL+EL T DW NFDGTLQEPK LPARLPNILLNG +GIAVGM+TDIPPH Sbjct: 123 KLTAYAHSLLAELNPETVDWTANFDGTLQEPKTLPARLPNILLNGGSGIAVGMSTDIPPH 182 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 N+ E+ A AL+ P+ + + LL IV PD+PT +I +R EI Y G GSVR+RA Sbjct: 183 NMGEIVAACQALLKNPQLSEEALLQIVPAPDFPTGGVLINTREEIAHCYRTGSGSVRLRA 242 Query: 244 VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 + E +VI LP+QVSG++V EQI Q++ KKL ++ +RDESDH+NPTRLV++PRS Sbjct: 243 SYHIEKDNIVIDELPYQVSGSKVQEQITQQIQEKKLLWLEAVRDESDHKNPTRLVLLPRS 302 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLN 363 +R+D ++M HLFATTDLEK+ RI LNMIGLDG+P +K L+ IL EWL +R TV RRL+ Sbjct: 303 HRIDKKRLMQHLFATTDLEKTVRIQLNMIGLDGKPQIKPLIVILREWLTYREQTVMRRLS 362 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLR 423 YRL + +RL IL GL +AFL +D VI+IIR D+ + ALM LT Q+EAIL ++LR Sbjct: 363 YRLHALNERLEILAGLRIAFLQLDTVIQIIREHDDAQTALMQALPLTAAQSEAILNIRLR 422 Query: 424 HLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQER 483 LAKLEE I E+ L E+ LQ ++ + + EL ADAQ Y D RR+ + Sbjct: 423 QLAKLEENAIVQEEKTLIDEQKSLQNLIDNRDARLQFIADELAADAQNYADPRRTTFIKP 482 Query: 484 EEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPV 543 + A+ PSE VT+VLS+M WVR AK H +D L YK+GD F + KS+Q Sbjct: 483 DAKTALPARAWQPSEAVTLVLSKMAWVRLAKTHQVDGRTLAYKSGDEFLLQIAAKSDQTA 542 Query: 544 VFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYG 603 + + GR YA+ + SARG GEPL+ + T+ +Q ++A++ YG Sbjct: 543 ILCGNDGRYYALSLANIASARGYGEPLSRYFSFAEKTTIVAAAALDPEQYYVLAANNAYG 602 Query: 604 FVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQ 662 FV +DLVA+ + GKA++ + + NA + P+ D +L A+ GR L+FP DLPQ Sbjct: 603 FVVKGSDLVAKTKKGKAVLNVGKANALALLPLF--DEESLLCALDNTGRTLIFPARDLPQ 660 Query: 663 LSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERG 722 SKGKGNKI+ I E +G L QL +LPPQ++ + GKR ++L + G RG Sbjct: 661 QSKGKGNKIMAITQKEWIQGVR-LKQLLILPPQASCLLTSGKRSMQLNAQNWAPYCGARG 719 Query: 723 RRGTLMRGLQRIDRVEIDSP 742 ++G + R VE+ P Sbjct: 720 QKGVYLPQPFRNADVEVIMP 739 >UniRef50_A0Q573 DNA topoisomerase IV subunit A n=34 Tax=Bacteria RepID=A0Q573_FRATN Length = 742 Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/744 (50%), Positives = 520/744 (69%), Gaps = 13/744 (1%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 S + ++ EF+E AYLNYSMYVI+DRALP I DGLKPVQRRI+YAMSE+GL+ +K+ Sbjct: 4 FSSLESTRSVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKY 63 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQ FSYRYP +DGQGNWG+ DDPKSFAAMRY Sbjct: 64 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRY 123 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TESRLSKY+ LLL EL +GT DW NFDGT+ EPK+LPA++PNILLNG GIAVGM+T I Sbjct: 124 TESRLSKYAVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYI 183 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHN+ E+ A + L+ +P +T++++L+IV+ PDYP A II+S+ EI +Y++G GS+R Sbjct: 184 PPHNITEIINACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIR 243 Query: 241 MRAVWKKED-GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 +AV++ ++ G VVI+ LPHQVS A V+EQIA +++ +K+ + +++DESD + P ++V+ Sbjct: 244 QQAVYEYDNHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVL 303 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 + + ++ ++M HL ATTDLEKS+R+N+NMIGLD RP VKNLL+IL+EWL +R+ T+R Sbjct: 304 YSATTKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLR 363 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILE 419 RRL L+KVL RLHILEGLL+AFLNIDEVI+IIRN D+P L +RF L+E QAEAIL Sbjct: 364 RRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILN 423 Query: 420 LKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSP 479 ++LR LAK+EE++I+ EQ EL+KER+ L+G L SE K NL+KKE + +GD RRS Sbjct: 424 IRLRKLAKIEEIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQILTDFGDSRRSK 483 Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKS 539 + E+A+A+ E D++PSE VTI+LS+ GW+R AKG +ID GL+YK D G S Sbjct: 484 IIVAEKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTGNS 543 Query: 540 NQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASD 599 N +VF G++Y++ LPSARG GE +T + L + + + L+AS+ Sbjct: 544 NIKLVFFSKLGKAYSMYVDKLPSARGYGEHITTYIPLDKQDQIISIAFVNAAGYFLIASE 603 Query: 600 AGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD 659 +G FV DL+ GK + + MP D +LAI+ GR+++ + Sbjct: 604 SGKAFVIPAEDLITNKITGKNIFDADDVFKFMPF----DQDHKMLAISSQGRVIIRDFAS 659 Query: 660 LPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTG 719 L KGKG II + +D L + + LT++ GKR I++ + ++ Sbjct: 660 FALLKKGKGKSIIRLDK------KDKLKFIELFRANQELTLNAGKRFIRIDSKNIETYYS 713 Query: 720 ERGRRGTLM--RGLQRIDRVEIDS 741 ++ G ++ +G ++I +++I++ Sbjct: 714 DKPSGGGVLLPQGFRKITKIDIET 737 >UniRef50_A4JTQ2 DNA topoisomerase IV subunit A n=34 Tax=Proteobacteria RepID=A4JTQ2_BURVG Length = 808 Score = 628 bits (1620), Expect = e-178, Method: Compositional matrix adjust. Identities = 328/749 (43%), Positives = 476/749 (63%), Gaps = 37/749 (4%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 R+ + + E AYL+Y+M V+ R LP + DG KPVQRR++YAM+++GL A+AK KSAR Sbjct: 56 RIPIGGWAERAYLDYAMSVVRGRTLPDVEDGQKPVQRRLLYAMNDMGLTATAKPVKSARV 115 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VGDVLGKYHPHGD + Y+A+V +AQ FS RYPL+DGQGN+G+ D + AAMRYTE+RL+ Sbjct: 116 VGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDGA-AAMRYTEARLT 174 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 +++LLL+E+ QGT D+ PN+DG +EP +LPARLP +LLNG +GIAVGMATDIP HNLR Sbjct: 175 PFADLLLAEIDQGTVDFQPNYDGAFEEPSLLPARLPVLLLNGASGIAVGMATDIPSHNLR 234 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 EVA A LI +P T ++ ++ GPDYP A+II+ A+I K+YE GRGS+R+RA W Sbjct: 235 EVADACSLLIRRPDATFGDVMSVLPGPDYPGGAQIISDIADIHKVYEGGRGSLRVRARWS 294 Query: 247 KEDGA-----VVISALPHQVSGARVLEQI------------------AAQMRNKKLPMVD 283 E A + ++ LPH VS +VLE+I M+ L ++D Sbjct: 295 LEQLARGQWQIAVTELPHGVSTQKVLEEIEELTNPKIKAGKKALTQEQGNMKALLLSVLD 354 Query: 284 DLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNL 343 +RD+SD ++P R+V P S+R +Q+MN L A T LE + +NL IGLDGRP K + Sbjct: 355 SVRDDSDEKHPVRIVFEPHSSRQTPEQLMNVLLAHTSLECNASVNLVTIGLDGRPQQKGI 414 Query: 344 LEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPAL 403 + L+EW+ FR TV RR +RL +V +R+HIL+G ++AFLNID+VI++IR DEPK L Sbjct: 415 VPALTEWVEFRYRTVTRRTEHRLAEVERRIHILDGRMIAFLNIDQVIKVIRESDEPKRDL 474 Query: 404 MSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKK 463 ++ F L+E QAE ILE++LR LA+LE +KI E ++L+ E+ LQ +LA M N + K Sbjct: 475 IATFHLSEVQAEDILEIRLRQLARLEGIKIEKELAQLQDEQRHLQSLLADRAAMTNQILK 534 Query: 464 ELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPS--EPVTIVLSQMGWVRSAKGHDIDAP 521 E++AD Q +GDDRR+ + E A+ ++ ++P+ +PVTI++S+ GW+R+ GH ID Sbjct: 535 EIEADKQKFGDDRRTLI---ESAEKVTSGAVVPTADDPVTIIVSRSGWLRARSGHGIDIS 591 Query: 522 GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGAT 581 L +KAGD A+++ +++ + D+ GR Y + +P+ RG G PLT + L G Sbjct: 592 TLTFKAGDDLLASIETRTSTSLAVFDTNGRCYNVASALIPTGRGDGVPLTSLIELQGGGR 651 Query: 582 VDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASD 641 + H+++ L+AS GYG+VC DL+ R +AGKA TL + PP I A D Sbjct: 652 LTHVIVIDQTANYLIASSGGYGYVCAGADLLTRQKAGKAFATLEPGEVMHPPAKI--AGD 709 Query: 642 MLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 + A+ GR+++FP+S++ + KGKG K++ + + E L + + S + Sbjct: 710 TVSAVCSGGRLVLFPLSEVKVMPKGKGVKLMELEARET------LVAVAIGDGASCIVST 763 Query: 702 VGKRKIKLRPEELQKVTGERGRRGTLMRG 730 + I L L K R R+G + G Sbjct: 764 TSGKPIALTGTALDKYRLHRARKGCQLPG 792 >UniRef50_P48374 DNA topoisomerase 4 subunit A n=17 Tax=Betaproteobacteria RepID=PARC_NEIGO Length = 768 Score = 603 bits (1556), Expect = e-171, Method: Compositional matrix adjust. Identities = 328/705 (46%), Positives = 445/705 (63%), Gaps = 41/705 (5%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 L L + E AYL Y+M V+ RALP + DG KPVQRRI++AM ++GL A AK KSAR V Sbjct: 15 LMLGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVV 74 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 G++LGKYHPHGDS+ YEAMV MAQ F+ RYPL+DG GN+G+ D + AAMRYTE+RL+ Sbjct: 75 GEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDGA-AAMRYTEARLTP 133 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 +ELLLSE+ QGT D++PN+DG EP LPARLP +LLNG +GIAVGMAT+IP HNL E Sbjct: 134 IAELLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNE 193 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 V QAAIAL+ +P L+ + PD+ +IIT E+R+IYE G+GSVR+RA ++ Sbjct: 194 VTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEI 253 Query: 248 EDGA-----VVISALPHQVSGARVLEQIAAQ----------------MRNKKL--PMVDD 284 E A V+++ LP + A++L +I Q + KKL ++D Sbjct: 254 EKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDR 313 Query: 285 LRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLL 344 +RDESD E+P RLV P+S+R+D D +N L A T LE + +NL M+GLD RPA KNL Sbjct: 314 VRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLK 373 Query: 345 EILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALM 404 IL EWL FR TV RRL +RL +V KRLHILEG L FL+IDEVI++IR D+PK LM Sbjct: 374 TILQEWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLM 433 Query: 405 SRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKE 464 + FGLTE QAE ILE++LR LA+LE K+ E +EL +E+ +L L E + L+ KE Sbjct: 434 AVFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLGDENEKRKLIIKE 493 Query: 465 LQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN 524 +QAD + +GD RR+ + EEA EP+T++LS+ GW+RS GH++D Sbjct: 494 MQADMKQFGDARRTLV---EEAGRAVLTQTAADEPITLILSEKGWIRSRAGHNLDLSQTA 550 Query: 525 YKAGDSFKAAVKGKSNQPVVFVDS-----TGRSYAIDPITLPSARGQGEPLTGKLTLPPG 579 +K GD K ++G P F GR+Y+ID +P RG G P++ + L G Sbjct: 551 FKEGDRLKQTLEG----PHCFTRRHPRFIRGRTYSIDAAEIPGGRGDGVPVSSLIELQNG 606 Query: 580 ATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDA 639 A ML +Q L++S GYGF+ D+V R +AGK ++T V+PPV + + Sbjct: 607 AKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYAS 666 Query: 640 SDM-----LLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEA 679 S + ++A T R L FP+ +L ++KGKG +II + + E+ Sbjct: 667 SFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGES 711 >UniRef50_C5CST5 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Variovorax paradoxus S110 RepID=C5CST5_VARPS Length = 798 Score = 568 bits (1463), Expect = e-160, Method: Compositional matrix adjust. Identities = 313/733 (42%), Positives = 457/733 (62%), Gaps = 56/733 (7%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGL------- 54 +D L L ++ + AYL Y++ V+ RALP + DG KPVQRRI+Y+MS +GL Sbjct: 14 TDGDTTLTLADYAQTAYLEYALSVVKGRALPDVSDGQKPVQRRILYSMSRMGLGFGGANG 73 Query: 55 NASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKS 114 AK KSAR VGDVLG++HPH D A Y+A+V MAQ FS RYPL DGQGN+G+ D + Sbjct: 74 TVGAKPVKSARVVGDVLGRFHPHSDQAAYDALVRMAQDFSQRYPLADGQGNFGSRDGDGA 133 Query: 115 FAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAV 174 AAMRYTE+RL++ + LLL E+ +GT D++PN+DG+ +EP++LPARLP LLNG +GIAV Sbjct: 134 -AAMRYTEARLARITSLLLDEIDEGTVDFIPNYDGSTEEPRLLPARLPFTLLNGASGIAV 192 Query: 175 GMATDIPPHNLREVAQAAIALI-DQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYE 233 G+AT+IP HNLRE+A A +ALI K + ++LL IV GPDYP A+II+ A+I Y Sbjct: 193 GLATEIPSHNLREIADACVALIKSNGKLSDEELLQIVPGPDYPGGAQIISGPADIADAYR 252 Query: 234 NGRGSVRMRAVWKKEDGA-----VVISALPHQVSGARVLEQI------------------ 270 GRGS+++RA WK ED A +V++ LP VS +VLE+I Sbjct: 253 TGRGSLKVRARWKIEDLARGQWQLVVNELPPGVSTQKVLEEIEEITNPKVKAGKKALSAD 312 Query: 271 AAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLN 330 Q++ L ++D +RDES + RLV P+++R+ D+ + L A T LE S INL Sbjct: 313 QTQLKAAMLSVLDVVRDESSKDAAVRLVFEPKTSRISQDEFITTLLAQTSLETSSPINLT 372 Query: 331 MIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVI 390 M+G+DG+P K+L ++L+EW+ FR TV +R +RL KV+ R+HILEG + LNIDEVI Sbjct: 373 MVGIDGKPTQKSLRQMLNEWIAFREVTVEKRSRFRLNKVMDRIHILEGRQLVLLNIDEVI 432 Query: 391 EIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450 IIR ++PK AL++RF L+E QAE ILE++LR LA+LE +KI+ + EL E+ +L+ I Sbjct: 433 AIIRAAEDPKAALIARFNLSEVQAEDILEIRLRQLARLEGIKIQQQLDELRTEQKKLEDI 492 Query: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510 L S + LL KE++ADA+ + D RR+ +Q E +A++E ++ EPVT+++SQ GWV Sbjct: 493 LGSPAALRRLLVKEIEADAKTFEDPRRTLIQ--AEKRAVAEVKVV-DEPVTVIVSQKGWV 549 Query: 511 RSAKGHDID--------APGLNYKAGDSFKAAVKGKS-NQPVVF---VDSTGRSYAIDPI 558 R+ KG + AP ++K+GD+ A + +S + +VF D + R Y + Sbjct: 550 RAQKGWASEKAAGNGGTAPEYSFKSGDTLYGAFECRSVDTLLVFGSAKDKSVRVYTVPVA 609 Query: 559 TLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAG 618 +LP ARG G+P+T + L G V H +L+A+ GYGF+ T ++++R R G Sbjct: 610 SLPGARGDGQPVTTLIELDAGTHVTHFFAGPVGASVLLANTGGYGFIATVENMMSRQRGG 669 Query: 619 KALITLPENAHVMPPVVIEDASDM--------LLAITQAGRMLMFPVSDLPQLSK-GKGN 669 KA I + E + P ++ AS + + GR+L F +++L L K G+G Sbjct: 670 KAFIDVGEGEQLCRPSLVGGASGAEPMPAATHVACASTGGRILTFDIAELKSLPKGGRGL 729 Query: 670 KIINIPSAEAARG 682 +I++ + + G Sbjct: 730 TLIDLDAKDTLAG 742 >UniRef50_A1TLU5 DNA topoisomerase IV subunit A n=22 Tax=Betaproteobacteria RepID=A1TLU5_ACIAC Length = 785 Score = 567 bits (1461), Expect = e-160, Method: Compositional matrix adjust. Identities = 308/711 (43%), Positives = 438/711 (61%), Gaps = 43/711 (6%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGL-------N 55 + + L L + + AYL Y++ V+ RALP + DG+KPVQRRI++AM +GL N Sbjct: 15 ESGDHLGLAGYAQRAYLEYALSVVKGRALPDVCDGMKPVQRRILFAMERMGLAYGGPTRN 74 Query: 56 ASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSF 115 AK KSAR VGDVLG++HPHGD + Y+A+V +AQ FS RYPL+DGQGN+G+ D + Sbjct: 75 VPAKPVKSARVVGDVLGRFHPHGDQSAYDALVRLAQDFSQRYPLIDGQGNFGSRDGDGA- 133 Query: 116 AAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVG 175 AAMRYTE+RL++ + LLL E+ QGT D+VPN+DG+ +EP+ LPARLP LLNG +GIAVG Sbjct: 134 AAMRYTEARLTRIASLLLDEIDQGTVDFVPNYDGSTEEPRQLPARLPFALLNGASGIAVG 193 Query: 176 MATDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENG 235 +AT+IP HNLRE+A A +AL+ PK ++L +V GPDYP +II+S +I+ Y G Sbjct: 194 LATEIPSHNLREIADACVALVKNPKLADEELAALVPGPDYPGGGQIISSPGDIQDAYRTG 253 Query: 236 RGSVRMRAVWKKEDGA-----VVISALPHQVSGARVLEQI------------------AA 272 RGS+++RA WK ED A +V++ LP VS +VLE+I Sbjct: 254 RGSLKVRARWKIEDLARGQWQMVVTELPPGVSAQKVLEEIEELTNPKVKAGKKALSQEQT 313 Query: 273 QMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMI 332 Q++ L ++D +RDES + P R+V P++ RV +++ L A T LE S INL M+ Sbjct: 314 QLKATVLGVLDVVRDESSKDAPVRIVFEPKTGRVPQQELITTLLAHTSLETSAPINLTMV 373 Query: 333 GLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEI 392 GLDG+P K+L +L EW+ FR+ T+ RR +RL KVL R+HILEG LNIDEVI I Sbjct: 374 GLDGKPVQKSLRRMLEEWIAFRQQTITRRSQHRLAKVLDRIHILEGRQTVLLNIDEVIAI 433 Query: 393 IRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILA 452 IR DEPK AL+ RF L++ QAE ILE++LR LA+LE +KI E EL +E+ +L+ ILA Sbjct: 434 IRASDEPKAALIERFRLSDRQAEDILEIRLRQLARLEAIKIEQELKELREEQGKLEDILA 493 Query: 453 SERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS 512 + + L+ KE++ADA+ + D RR+ +Q + A A + P T+V+SQ GWVR+ Sbjct: 494 NPASLRRLMVKEIEADAKQFADARRTLIQADKRATAEVKVVDEPV---TVVVSQKGWVRA 550 Query: 513 AKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTG 572 +GH DA +K+GD+ + ++ ++ S GR Y++ LP ARG G+P+T Sbjct: 551 RQGHGHDAGTFAFKSGDALYGTFECRTVDTLIAFGSNGRVYSVAVSQLPGARGDGQPITT 610 Query: 573 KLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMP 632 + L G H + LL+A GYGF+ + ARNR GKA ++L E + Sbjct: 611 LIDLEAGTQPVHYFAGPANAALLLAGSGGYGFIAAVEHMTARNRGGKAFVSLGEGEQLCR 670 Query: 633 P--VVIEDASDMLLAITQ------AGRMLMFPVSDLPQLSK-GKGNKIINI 674 P S L T GR+L F +++L Q++ G+G +I++ Sbjct: 671 PSHAAFTSGSQPLAPATHVCCASAGGRILTFEITELKQMANGGRGLMLIDL 721 >UniRef50_A0L827 DNA topoisomerase IV subunit A n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L827_MAGSM Length = 754 Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust. Identities = 291/691 (42%), Positives = 435/691 (62%), Gaps = 19/691 (2%) Query: 1 MSDMAERL---ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 57 MS+ E++ L E E+ YL Y++ I+ R+LP + DGLKPV RRI++AM L L+ + Sbjct: 1 MSNTFEQIDPCNLREELESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALRLDPN 60 Query: 58 AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 117 + +KKSAR VGDV+GKYHPHGD A Y+AMV +AQ F+ RYPLVDGQGN+G D S AA Sbjct: 61 SPYKKSARVVGDVIGKYHPHGDQAAYDAMVRLAQEFAVRYPLVDGQGNFGNIDG-DSAAA 119 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 MRYTE+RL+ ++ LL +L T D++P +DG+++EP +LPAR PN+L NG++GIAVGM+ Sbjct: 120 MRYTEARLTSVAKALLEDLEMDTVDFMPTYDGSMEEPVVLPARFPNLLANGSSGIAVGMS 179 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T++PPHN+ E+ A + LI +P ++++L+ + PD+PT ++ AE ++Y GRG Sbjct: 180 TNVPPHNVGEILDACLLLISKPNCSIEELMQHLPAPDFPTGGILMADHAERLEVYSEGRG 239 Query: 238 SVRMRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHE 292 S+R+RA W ED +V++ +P+QV +R++E+IA + ++K P + ++RDESD E Sbjct: 240 SLRLRARWAVEDLGRGLWQIVVTEIPYQVQKSRLIERIAQLVIDRKCPFLTNVRDESD-E 298 Query: 293 NPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLV 352 N R+V+ PR+ +D + +M+ LF +DLE NLN+I RP V +L IL WL Sbjct: 299 N-LRIVLEPRARTLDPELIMHFLFKHSDLESRASFNLNVIVGGHRPEVLDLKGILRHWLD 357 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTET 412 R RR +Y L+K+ +RLH+L+ L+ LNIDEVIEII+ D+P P LM+RF L E Sbjct: 358 HRFVVHTRRASYELKKIRERLHLLQAFLIVHLNIDEVIEIIKKNDDPAPVLMARFSLDEI 417 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QAEAIL ++LR+L KLEEMKIR E EL+ D L+ +LA ++ M ++ EL+A + + Sbjct: 418 QAEAILNMRLRNLRKLEEMKIRKEMEELQARADLLEAMLADDKIMWKAIRDELKATRKEF 477 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFK 532 D RR+ + E + D + EP++++LSQMGWV++ KGHD++ L +K D Sbjct: 478 ADVRRTEICGSVEDVHVRPEDFVEKEPISVILSQMGWVKANKGHDVNTEVLRFKGDDLLL 537 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQ 592 + +NQ V F+ +G+ + I LP+ +G GEPLT L G V L +Q Sbjct: 538 RSFPCYTNQSVSFISQSGKLFTILASNLPAGKGFGEPLTSMFDLDGGDRVLWALPVDPEQ 597 Query: 593 KLLMASDAGYGFVCTFNDLVARNRAGKALITLPEN---AHVMPPVVIEDASDMLLAITQA 649 + L+ + G GF DL+A R GK LITL H+ P + +I+++ Sbjct: 598 EYLLITRLGQGFRVKGVDLIANQRKGKQLITLKSGDQPLHLHPV-----KGPWVGSISRS 652 Query: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAA 680 R+L+FP+ P ++KGKG ++ + + E Sbjct: 653 RRLLIFPIEQFPLMAKGKGVRVQKLGADEVV 683 >UniRef50_Q21V46 DNA topoisomerase IV subunit A n=83 Tax=Bacteria RepID=Q21V46_RHOFD Length = 796 Score = 545 bits (1405), Expect = e-153, Method: Compositional matrix adjust. Identities = 312/713 (43%), Positives = 443/713 (62%), Gaps = 50/713 (7%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGL-------NASAKF 60 L L + + AYL Y++ V+ RALP + DG KPVQRRI+Y+MS +GL N AK Sbjct: 24 LNLATYAQRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMSRMGLGFGGPNGNTGAKP 83 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KSAR VGDVLG++HPHGDS+ Y+A V MAQ FS RYPL+DG GN+G+ D + AAMRY Sbjct: 84 VKSARIVGDVLGRFHPHGDSSVYDAAVRMAQDFSQRYPLIDGHGNFGSRDGDGA-AAMRY 142 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RL+K + LLL E+ +GT D++PN+DG+ QEP LPARLP LLNG +GIAVG+AT+I Sbjct: 143 TEARLAKITGLLLDEIDEGTVDFMPNYDGSTQEPSQLPARLPFNLLNGASGIAVGLATEI 202 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 P HNLREVA A IALI P+ + L ++ GPDYP +II+S +I + Y +GRGS++ Sbjct: 203 PSHNLREVADACIALIKSPQLSESDLFALIPGPDYPGGGQIISSAEDIAEAYRSGRGSLK 262 Query: 241 MRAVWKKEDGA-----VVISALPHQVSGARVLEQIAA------------------QMRNK 277 RA WK ED A +V++ LP VS RVLE+I Q++ Sbjct: 263 CRARWKIEDLARGQWRLVLTELPPGVSTQRVLEEIEELSNPKVKAGKKALSLEQNQLKAT 322 Query: 278 KLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR 337 L ++D +RDES + RLV P+++R+ +++ L A T LE S INL MIGLDGR Sbjct: 323 LLSVLDGVRDESSKDAAVRLVCEPKTSRISQQELITTLLAHTSLETSSPINLTMIGLDGR 382 Query: 338 PAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED 397 P K+L ++L+EW+ FR+ T+ RR +RL KVL R+HILEG + LNIDEVI IIR D Sbjct: 383 PTQKSLRQMLTEWIAFRQKTIERRSQHRLGKVLDRIHILEGRALVLLNIDEVIAIIRQAD 442 Query: 398 EPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKM 457 EPK AL++RF L++ QAE ILE++LR LA+LE +KI E + L E+ +L+ IL S + Sbjct: 443 EPKAALIARFHLSDRQAEDILEIRLRQLARLEAIKIEQELAGLRGEQQKLEEILGSPSAL 502 Query: 458 NNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHD 517 L+ KE++ADA+ + D RR+ +Q E KA+ E ++ EPVT+V+SQ GWVR+ KG Sbjct: 503 RRLMIKEIEADAKTFADPRRTLIQ--AEKKAVLEVKVV-DEPVTVVVSQKGWVRAQKGWA 559 Query: 518 ID--APGL-----NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPL 570 + A G+ ++KAGD+ + ++ ++ S GR Y++ LP ARG G+P+ Sbjct: 560 SERAANGVLPAEYSFKAGDALYDTFECRTVDTLLAFGSNGRVYSVAVALLPGARGDGQPM 619 Query: 571 TGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHV 630 T L L G + + LL++S GYGF+ + ++ +R +AGKA +T + Sbjct: 620 TSLLELEAGTQLLYYFAGPAPATLLLSSSGGYGFLASVENMTSRLKAGKAFVTCNAGEIL 679 Query: 631 MPPVVIED--------ASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINI 674 P + A+ + + GR+L F +S L ++ G+G +I++ Sbjct: 680 CRPSPVAGGSGATPWPAATHVACASAGGRILTFEISQLKTMATGGRGLMLIDL 732 >UniRef50_Q59749 DNA topoisomerase 4 subunit A n=64 Tax=Alphaproteobacteria RepID=PARC_RHIME Length = 758 Score = 535 bits (1379), Expect = e-150, Method: Compositional matrix adjust. Identities = 282/678 (41%), Positives = 422/678 (62%), Gaps = 28/678 (4%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 E YL Y++ IM RALP + DGLKPV RRI++AMSE+GL ++ FKK AR VGDV+GK+ Sbjct: 25 EERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFKKCARIVGDVIGKF 84 Query: 75 HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLS 134 HPHGD + Y+A+V +AQ FS RYP+VDGQGN+G D + AA RYTE+++++ + LLL Sbjct: 85 HPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDGDNA-AAYRYTEAKMTEVAALLLE 143 Query: 135 ELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIA 194 + Q D+ P ++ QEP +LP PN+L NG +GIAVGMAT IPPHN E+ AA+ Sbjct: 144 GIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGASGIAVGMATSIPPHNAHELCDAALH 203 Query: 195 LIDQPKTTLDQLL--------DIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 LI P T++ LL ++GPD+PT I+ SRA + + Y GRG R+RA W Sbjct: 204 LIKHPDATVEDLLFDPANPQRGGIEGPDFPTGGVIVESRASMAESYRTGRGGFRVRARWA 263 Query: 247 KEDGA-----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 ED +V++ +P+QV +R++E+IA + +KLP+++D+RDES + R+V+VP Sbjct: 264 VEDLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDESAED--VRVVLVP 321 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 +S VD + +M LF T+LE +N+N++ + P V L E+LSEWL RR+ ++RR Sbjct: 322 KSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSEWLAHRREVLQRR 381 Query: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 +RL + +RL IL G L+A+LNIDEVI IIR EDEPK ++ RFGLT+ QAEAIL ++ Sbjct: 382 SRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEPKAVMIERFGLTDVQAEAILNMR 441 Query: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD-----DR 476 LR L KLEE +IR E L KE+ +++ +LAS K + E+ + + R Sbjct: 442 LRSLRKLEEFEIRTEFDSLSKEKAEIEALLASGDKQWQAVAWEIGEVKKKFAKATELGKR 501 Query: 477 RSPLQEREEAKAMS-EHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 RS + +A + + M+ EP+T+V+S+ GW+R+ KGH D L +K GD K + Sbjct: 502 RSTFSDAPDADVEAIQQAMIEKEPITVVISEKGWIRALKGHIADTSSLQFKDGDGLKVSF 561 Query: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 ++ ++ + G++Y + LP RG GEPL + + V + +KL+ Sbjct: 562 PAQTTDKILIFTTGGKAYTLGGDKLPGGRGHGEPLRIMVDMENDQDVLTAFVHDPARKLI 621 Query: 596 MASDAGYGFVCTFNDLVARNRAGKAL--ITLPENAHVMPPVVIEDASDMLLAITQAGRML 653 ++S AG GFV T +D+VA R GK + +T+P+ A ++ PV D L + + +ML Sbjct: 622 VSSTAGNGFVVTESDIVANTRKGKQVMNVTMPDEAKLVVPV----KGDHLAVVGENRKML 677 Query: 654 MFPVSDLPQLSKGKGNKI 671 +FP+ +P++++GKG ++ Sbjct: 678 VFPLVQVPEMARGKGVRL 695 >UniRef50_Q1RGX8 DNA topoisomerase 4 subunit A n=15 Tax=Rickettsia RepID=PARC_RICBR Length = 736 Score = 530 bits (1366), Expect = e-149, Method: Compositional matrix adjust. Identities = 284/722 (39%), Positives = 446/722 (61%), Gaps = 28/722 (3%) Query: 18 YLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPH 77 YL Y++ IM R+LP + DGLKPV RR++YAM +L L ++ +KK AR VGDV+GKYHPH Sbjct: 19 YLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYKKCARVVGDVIGKYHPH 78 Query: 78 GDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELG 137 GD A Y+ +V +AQ FS RYPL+DGQGN+G+ D + AAMRYTESR+++ LL+ ++ Sbjct: 79 GDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDGDNA-AAMRYTESRMTEICTLLMEDID 137 Query: 138 QGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALID 197 + T D+ +D + EP ++PA PN+L NG+ GIAVGMAT+IPPHNL E+ A + LID Sbjct: 138 KDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIPPHNLHELCDALMHLID 197 Query: 198 QPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GAV 252 PK + +++ ++GPD+PT II I Y GRGS R+RA W+KE+ + Sbjct: 198 HPKAEISDIMNFIKGPDFPTGGIIIDKSDVITSAYMTGRGSFRVRARWEKEELNYGVYQI 257 Query: 253 VISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVM 312 V++ +P+QV ++++EQIA +++KK+P+V ++RDES + RLVI PR D VM Sbjct: 258 VVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDES--TDIIRLVIEPRDRSCDPQIVM 315 Query: 313 NHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKR 372 LF T+LE ++N+N+IG + P V N+LE+L E+L R++ + RR Y L K+ R Sbjct: 316 ESLFKLTNLESRIQLNMNVIGSNNVPKVMNILEVLQEFLSHRQNIITRRSTYLLNKIKHR 375 Query: 373 LHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMK 432 L ILEGL +A+LN+DE+I+IIR EDEPK +M RF LTE Q EAIL +LR L KLEE + Sbjct: 376 LEILEGLRIAYLNLDEIIKIIREEDEPKAIMMQRFQLTEIQVEAILNTRLRSLRKLEEQE 435 Query: 433 IRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----RRSPLQEREEAK 487 I E S L+K++ L+ IL + +++ ++KKE++A +G + RR+ ++ Sbjct: 436 IITEHSNLQKQQAILEEILNNPKELWKVVKKEIKAVQAKFGLNTTIGARRTSFEQVTLTN 495 Query: 488 AMSE-HDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFV 546 + + + EP+TI+ S+MGWVRS KGH+ D + YK GD+ K ++ + ++ + Sbjct: 496 QVVDITAFITKEPITIICSKMGWVRSLKGHNNDLSSIKYKEGDAEKFILEAYTTDKILII 555 Query: 547 DSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGAT-VDHMLMESDDQKLLMASDAGYGFV 605 S GR + + + +G GE + KL + G + +L+ D LL+AS G GFV Sbjct: 556 SSEGRFFTLLADNISKGKGTGESI--KLLVDIGNNDITEILVYKPDHLLLLASSIGKGFV 613 Query: 606 CTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 665 N+++A+ ++GK ++ +P+ + + + D + I ++ ++L+F + ++P++ K Sbjct: 614 VNSNEVMAQTKSGKQIMNVPDGHTCIACLPVN--GDSVACIGESRKLLVFNIDEIPEMKK 671 Query: 666 GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRG 725 G+G + +A+ L + + + L+ + G K+KL + + G+RG G Sbjct: 672 GQGVTLQKFKNAK-------LLDIKIFNREDGLSWNSGG-KVKLE-KNIIAFLGKRGSTG 722 Query: 726 TL 727 L Sbjct: 723 KL 724 >UniRef50_C5JAG1 DNA topoisomerase IV subunit A n=1 Tax=uncultured bacterium RepID=C5JAG1_9BACT Length = 765 Score = 528 bits (1359), Expect = e-148, Method: Compositional matrix adjust. Identities = 300/722 (41%), Positives = 437/722 (60%), Gaps = 24/722 (3%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 E+ YL Y++ I+ R+LP + DGLKPV RRI++AM L L+ + FKKSAR VGDV+GK+ Sbjct: 19 ESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALRLDPGSGFKKSARVVGDVIGKF 78 Query: 75 HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLS 134 HPHGD A Y+AMV +AQ F+ RYPLVDGQGN+G D + AAMRYTE+RL+ ++ LL Sbjct: 79 HPHGDQAAYDAMVRLAQDFAQRYPLVDGQGNFGNVDGDGA-AAMRYTEARLTPVAQALLE 137 Query: 135 ELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIA 194 +L + T D +P +DG+ +EP +LPAR PN+L NG TGIAVGM+T IPPHN EV AA+ Sbjct: 138 DLDRQTVDLIPTYDGSQEEPVVLPARFPNLLANGATGIAVGMSTAIPPHNAGEVLAAALH 197 Query: 195 LIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE-----D 249 LI P + +L+ + GPD+PT ++ E+R++Y GRG +R+RA W++E Sbjct: 198 LIRHPDCGVAELMKHLPGPDFPTGGVLVAEPEELREVYATGRGGLRLRARWEQEMVGHGT 257 Query: 250 GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMD 309 +V++ +P+ V R++E+IA + ++K P + D+RDESD + R+V+ PRS +D + Sbjct: 258 WRLVVTEIPYHVQKGRLIERIAQLILDRKCPFLSDVRDESDAK--VRIVLEPRSRGLDPE 315 Query: 310 QVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKV 369 ++M LF +DLE +NLN++ + RP V +L +L WL R RR + LE++ Sbjct: 316 KIMAFLFKNSDLEVRINVNLNVVTAEARPEVMDLKGLLRAWLDHRFQVHTRRATHDLERI 375 Query: 370 LKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLE 429 +RLH+L+ L LNID VI II+ D+P PALM RFG+ QAEA+L L+LR L +LE Sbjct: 376 RERLHLLQAYLTVHLNIDAVIAIIKAHDDPAPALMQRFGMDSEQAEAVLNLRLRALRRLE 435 Query: 430 EMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAM 489 EM IR E E E +L +LA M ++ E++ + + D RR+ + + Sbjct: 436 EMSIRKEMGEKEARAAELSAMLADPTLMWAAVQDEVKRTRKEFSDGRRTRMAGPAPEIDL 495 Query: 490 SEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDST 549 D++ EP+T VLS+ GW+++ KGHDID + +K D + AVKG S+Q V F+ ++ Sbjct: 496 RPEDLIQKEPLTAVLSRKGWIKALKGHDIDLEKIRFKEEDGLERAVKGYSHQTVTFLAAS 555 Query: 550 GRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFN 609 G+ Y++ LPS + GEPLT L PG + ML + + + + G GF Sbjct: 556 GKVYSLLGDRLPSGKRFGEPLTVLFELDPGDRILWMLAVDPEGEYFVTTRLGQGFRIRGR 615 Query: 610 DLVARNRAGKALITLPEN---AHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKG 666 DLVA R GK +++L E HV P + A+ + AI+ R+L+ + + P L +G Sbjct: 616 DLVANQRTGKQVVSLREGDQPLHVHP---VRGAA--VAAISHGRRLLICRLEEFPLLGRG 670 Query: 667 KGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGT 726 KG +I N+ RGE GL PQ+ L + GKR +L EL K G RG RG Sbjct: 671 KGVRIQNL-----GRGE-GLVDAMTFDPQAGLVLDSGKRTRQL--TELDKWQGTRGSRGA 722 Query: 727 LM 728 ++ Sbjct: 723 ML 724 >UniRef50_C5SLW9 DNA topoisomerase IV, A subunit n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SLW9_9CAUL Length = 738 Score = 525 bits (1352), Expect = e-147, Method: Compositional matrix adjust. Identities = 280/661 (42%), Positives = 414/661 (62%), Gaps = 14/661 (2%) Query: 18 YLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPH 77 YL Y++ IM RALP + DGLKPV RR++YAM + LN A +KSA+ VG+V+G +HPH Sbjct: 26 YLAYALSTIMHRALPDVRDGLKPVHRRVLYAMHNMRLNPQAAARKSAKVVGEVMGNFHPH 85 Query: 78 GDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELG 137 GD + Y+A+V MAQ F+ RYP+VDGQGN+G D S AAMRYTE +++ + LLL + Sbjct: 86 GDQSIYDALVRMAQWFAQRYPMVDGQGNFGNIDG-DSAAAMRYTECKMTTAAMLLLDGID 144 Query: 138 QGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALID 197 + D+ P +DG +EP +LPA PN+L NG TGIAVGMAT IPPHN+ E+ A LI Sbjct: 145 ENAVDFRPTYDGQDEEPVVLPAAFPNLLANGATGIAVGMATSIPPHNVAELIDACKLLIA 204 Query: 198 QPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED---GA--V 252 +P T + L+ I+ GPD+PT + R I + YE GRGSVR+RA ++ ED GA + Sbjct: 205 EPNTDTNGLMAIIPGPDFPTGGICVERREAIYEAYETGRGSVRVRARYEVEDLGRGAWRI 264 Query: 253 VISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVM 312 ++S +P+QV +R++EQ+A + KK P++ D+RDESD E RL++ P++ +D + +M Sbjct: 265 LVSEIPYQVQKSRLIEQLADLIEAKKAPLLGDVRDESDEE--VRLILEPKTRNIDPEVLM 322 Query: 313 NHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKR 372 LF +DLE + N+N++ G P V L IL+ +L RR+ + R+ +RL+K+ KR Sbjct: 323 ESLFKISDLETRFAFNMNVLDKTGTPRVMGLKTILTSFLDHRREVLIRQSQWRLDKIEKR 382 Query: 373 LHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMK 432 LH+L+GL++AFLN+DEVI IIR ++ PK LM+RF LTE Q + IL+ +LR LA+LEEM Sbjct: 383 LHVLDGLMIAFLNLDEVIRIIREDETPKQTLMARFELTEVQVDYILDTRLRQLARLEEMA 442 Query: 433 IRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSE- 491 I+GE +L KERD L +L SE+K + ++L + RR+ E + ++ Sbjct: 443 IKGEHDKLSKERDGLLSLLGSEKKQWKRIDEQLTEVRKQLLSARRTTFAEAPQGVEVAAI 502 Query: 492 HDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGR 551 LP E +T++LS+ GW+R+ KG D L +K GD+ V G + ++ + S GR Sbjct: 503 ESYLPKEALTVILSERGWIRATKGRVDDPSELKFKEGDNLGFLVPGYNTDKLLIMTSDGR 562 Query: 552 SYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 611 + + LPS RG GEPL L + + ++ M + K LM S GYGFV D Sbjct: 563 FFTLGCDKLPSGRGHGEPLQLMLEMEENTRIVNVFMFTPGAKRLMVSKNGYGFVMNEEDA 622 Query: 612 VARNRAGKALITLP-ENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNK 670 V +AGK+++ A V PV D ++ + + ++L++PVS+LP++++GKG K Sbjct: 623 VGNKKAGKSVLNADGTEAFVALPVT----GDHVVILGENNKVLVYPVSELPEMARGKGVK 678 Query: 671 I 671 + Sbjct: 679 L 679 >UniRef50_C6XHT3 DNA topoisomerase IV subunit A n=27 Tax=Alphaproteobacteria RepID=C6XHT3_LIBAP Length = 753 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 273/740 (36%), Positives = 446/740 (60%), Gaps = 29/740 (3%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 R AL E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSAR Sbjct: 23 RFALEE----RYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSARI 78 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R++ Sbjct: 79 VGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEARMT 137 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 + +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN++ Sbjct: 138 QVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHNVQ 197 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA W Sbjct: 198 EICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRARWC 257 Query: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ P Sbjct: 258 VEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVLFP 315 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 ++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + RR Sbjct: 316 KNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLFRR 375 Query: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL L+ Sbjct: 376 SSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILNLR 435 Query: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----R 476 LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + R Sbjct: 436 LRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLGRR 495 Query: 477 RSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 R+ E A KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K A+ Sbjct: 496 RTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKIAL 555 Query: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 + ++ + + G++Y + L S RG GE + + L + + KLL Sbjct: 556 HAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCKLL 615 Query: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 + S G F+ ++++A R GK + + + +V++ D + + + ++L+F Sbjct: 616 VVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKM--KLVVKVTGDHVAVVGENRKLLIF 673 Query: 656 PVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPEEL 714 + +P++S+GKG ++ + + G++ + LT I R +L Sbjct: 674 SIDQIPEMSRGKGVRL-------QSYKDGGISDVICFKICEGLTWIDSAGRSYNRSENDL 726 Query: 715 QKVTGERGRRGTLM-RGLQR 733 G+RG G+L+ +G R Sbjct: 727 LGWLGKRGGVGSLVPKGFPR 746 >UniRef50_B4W7D2 DNA topoisomerase IV, A subunit n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W7D2_9CAUL Length = 737 Score = 510 bits (1313), Expect = e-143, Method: Compositional matrix adjust. Identities = 274/663 (41%), Positives = 409/663 (61%), Gaps = 11/663 (1%) Query: 18 YLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPH 77 YL Y++ I +RALP + DG KPV RRI+YAM ++ LN A +K A+ VG+V+G YHPH Sbjct: 26 YLAYALSTITNRALPDVRDGFKPVHRRILYAMHQMRLNPQAAARKCAKVVGEVMGGYHPH 85 Query: 78 GDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELG 137 GD++ YEA+V +AQ F+ RYPLVDGQGN+G D S AAMRYTE +L+ + LLL + Sbjct: 86 GDASIYEALVRLAQDFAQRYPLVDGQGNFGNIDG-DSAAAMRYTECKLTPAAVLLLDGID 144 Query: 138 QGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALID 197 Q + D+ +D +EP +LPA PN+L NG++GIAVGMAT IPPHN+ E+ A L+D Sbjct: 145 QDSVDFRATYDDQDEEPVVLPAGFPNLLANGSSGIAVGMATSIPPHNVGELIDACQMLLD 204 Query: 198 QPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GAV 252 +P+ T +L+ +V GPD+PT + A I YE GRG VR+RA W+ ED + Sbjct: 205 RPEATTAELVQLVPGPDFPTGGVAVEGHASILDAYETGRGGVRLRARWETEDLGRGVWRI 264 Query: 253 VISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVM 312 +++ +P+QV +R++E +A + +KK P++ D+RDES + RL++ P++ ++ + +M Sbjct: 265 IVTEMPYQVQKSRLIEALADLIEHKKAPLLGDVRDESAED--IRLILEPKNRTIEPEMLM 322 Query: 313 NHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKR 372 LF +DLE + IN+N++ DG P V L L +L RR+ + RR +R+ +V KR Sbjct: 323 ESLFKLSDLEVRFPINMNVLDADGTPRVMGLKACLRAFLDHRREVLNRRSQWRIARVEKR 382 Query: 373 LHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMK 432 LH+LEGL + FLNIDEVI I+R E++PK L++RFGLTE QA+ IL+ +LR LA+LEEM Sbjct: 383 LHLLEGLRIVFLNIDEVIRIVREEEQPKAVLIARFGLTEVQADFILDTRLRQLARLEEMT 442 Query: 433 IRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKA-MSE 491 I E L +E LQ + +SE K + KEL+A +A RR+ + + + A ++ Sbjct: 443 IEKEFKALSEELAHLQALTSSEGKQWKAISKELEAVRKALISPRRTTIADAVDTSAFVAP 502 Query: 492 HDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGR 551 +P E +T++LS+ GW+R+AKG D L +K GD V + ++ S GR Sbjct: 503 EAFIPREAITVILSERGWIRAAKGKVEDPSELKFKEGDQLAYLVPAYTTDKLLVGASDGR 562 Query: 552 SYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 611 + I L S RG GEPL + L A + ++L KLL+AS AGYGF+ +D Sbjct: 563 IFTIGADKLASGRGHGEPLRLMIDLDEKAEIINVLAHQPGGKLLIASKAGYGFIAPEDDT 622 Query: 612 VARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKI 671 +A+ R GK ++ A + P +D + I + + L+FP+ +LP++ +GKG ++ Sbjct: 623 LAQKRGGKQVLNGDMLAMLRIPQT--PTADHVATIGENIKTLIFPLDELPEMGRGKGVRL 680 Query: 672 INI 674 N Sbjct: 681 QNF 683 >UniRef50_A8LLG0 DNA topoisomerase IV, A subunit n=23 Tax=Alphaproteobacteria RepID=A8LLG0_DINSH Length = 777 Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust. Identities = 292/753 (38%), Positives = 438/753 (58%), Gaps = 52/753 (6%) Query: 18 YLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPH 77 YL Y++ IM RALP DGLKPV RRI+YAM EL L+A+ F+KSA+ GDV+G YHPH Sbjct: 35 YLQYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSATGGFRKSAKISGDVMGNYHPH 94 Query: 78 GDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELG 137 GD+A Y+AM +AQ F+ RYPLVDGQGN+G D AA RYTE+RL+ +E L+ L Sbjct: 95 GDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNP-AASRYTEARLTAAAEALMEGLA 153 Query: 138 QGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALID 197 + D+ N+DGTL EP++LPA PN+L NG++GIAVGMAT+IPPHNL E+ + LI Sbjct: 154 ENAVDFRDNYDGTLTEPEVLPAAFPNLLANGSSGIAVGMATNIPPHNLHELIDGCLHLIR 213 Query: 198 QPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GAV 252 P + LL+++ GPD+PT I+ + I + Y GRG+ R+RA W +ED + Sbjct: 214 APNARDETLLEMIPGPDFPTGGVIVEPKESIAQAYATGRGAFRLRARWAREDLGRGQWQI 273 Query: 253 VISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVM 312 VI+ +P+QV ++++E+IA ++ KK+P++ D+RDES + R+++ PRS VD + +M Sbjct: 274 VITEIPYQVQKSKLIEKIADLIQTKKVPILADIRDES--ADDVRIILEPRSKNVDPEVLM 331 Query: 313 NHLFATTDLEKSYRINLNMIGLDGR-PAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLK 371 LF ++LE + +N+N++ +DGR P V +L E+L +L RRD + RR +RL K+ Sbjct: 332 GTLFRLSELETRFSLNMNVL-IDGRTPKVCSLREVLRAFLDHRRDVLGRRSRHRLAKIDH 390 Query: 372 RLHILEGLLVAFLNIDEVIEIIRNEDEPKPALM----------------------SRFGL 409 RL +LEG LVAFLN+D VI+IIR +++PK ALM L Sbjct: 391 RLEVLEGFLVAFLNLDRVIDIIRYDEDPKAALMREDWSLKHVRATDEADYKTPAPGEGEL 450 Query: 410 TETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADA 469 TE QAEAIL ++LR L +LEEM++ E+ L ER +L+ +LA E + EL+ Sbjct: 451 TEVQAEAILNMRLRSLRRLEEMELISERDALMAERAELEDLLADEALQWARIADELREVR 510 Query: 470 QAYGD-----DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN 524 + +G RR+ E +S DM+ EP+T+V S+MGW+R+ KGH L Sbjct: 511 KQFGKGTALGKRRTDFAVATEMAEVSLEDMIEREPITVVCSKMGWIRAMKGHVALDQALK 570 Query: 525 YKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDH 584 +K GD + ++ ++ + GR Y + LP RG GEP+ + LP A + Sbjct: 571 FKDGDEGRFIFHAETTDKLLAFGANGRFYTLSCAALPGGRGMGEPIRLMVDLPNEAELVD 630 Query: 585 MLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL--PENAHVMPPVVIEDASDM 642 + + ++L++ASDAG GF+ +++A+ R GK ++ + P A + PV A D Sbjct: 631 LFLHVPGRRLIVASDAGDGFIVPETEVLAQTRTGKQVLNVKSPHRALLARPV----AGDA 686 Query: 643 LLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLP-PQSTLTIH 701 + A+ + ++L+F +LP++ +GKG ++ GL+ L Q + Sbjct: 687 IAAVGENRKLLVFAADELPEMGRGKGVRLQKYKDG-------GLSDLRSFDRAQGLQWLD 739 Query: 702 VGKRKIKLRPEELQKVTGERGRRGTLM-RGLQR 733 G R + EL + +G+R G + RG R Sbjct: 740 AGGRTRTVADPELAEWSGKRAGTGRMAPRGFPR 772 >UniRef50_O54478 DNA topoisomerase 4 subunit A n=18 Tax=Alphaproteobacteria RepID=PARC_CAUCR Length = 759 Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust. Identities = 278/681 (40%), Positives = 408/681 (59%), Gaps = 25/681 (3%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 L E YL Y++ I RALP + DGLKPV RR++YAMS + LN A +K A+ VG+ Sbjct: 23 LTEALSRRYLAYALSTIGSRALPDVRDGLKPVHRRVLYAMSNMRLNPDAAARKCAKVVGE 82 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 V+G +HPHGD++ Y+A+V +AQ FS R PLV+GQGN+G D S AAMRYTE ++++ + Sbjct: 83 VMGNFHPHGDASIYDALVRLAQEFSQRIPLVEGQGNFGNIDG-DSAAAMRYTECKMTEAA 141 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 LLL + + D+ P +DG +EP +LP+ PN+L NG++GIAVGMAT IPPHN E+ Sbjct: 142 MLLLDGIDEDAVDFRPTYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPHNAAELI 201 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED 249 A L+ P T LL+ V GPD+PT I+ SRA + + YE GRG VRMRA W+KED Sbjct: 202 DACQLLLANPDATTADLLEKVPGPDFPTGGVIVESRASLLETYETGRGGVRMRAKWEKED 261 Query: 250 GA-----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 +V++ +P+QV + ++EQ+A + +KK ++ D+RDES + RLV+ P+S Sbjct: 262 TGRGTYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDESAED--IRLVLEPKSK 319 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 364 V+ + +M LF + LE + +N+N++ G P V + + L +L RR+ + RR + Sbjct: 320 NVEPEVLMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALMAFLAHRREVLTRRARH 379 Query: 365 RLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRH 424 RL K+ RLHIL+GLL+A+LN+DEVI I+R ED+PK L+ FGLT+ QA+AIL +LR Sbjct: 380 RLAKIEARLHILDGLLIAYLNLDEVIRIVRYEDKPKEKLIETFGLTDIQADAILNTRLRQ 439 Query: 425 LAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY------------ 472 LAKLEEM+IR E +EL +ERD + +LASE K L+ L A Sbjct: 440 LAKLEEMEIRREHAELVEERDGILAMLASEAKQWKLVGVGLSEVRAALLKIKHPLDKPRP 499 Query: 473 -GDDRRSPLQEREEAKAMSEHD-MLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDS 530 G RS E + A + + M+ EP+TI+LS+ GW+R+AKG D L +K GD Sbjct: 500 TGVTGRSVFGEAPQVDADAAIEAMIVREPITIILSERGWIRAAKGKIDDPSELKFKEGDK 559 Query: 531 FKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESD 590 V ++ ++ S GR + + LPSARG GEP+ + L + + Sbjct: 560 LGFLVPAETTDKLLIFSSDGRFFTLGCDKLPSARGHGEPVRMMIELDDKVKIIDVFPFKA 619 Query: 591 DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAG 650 +K ++AS GYGF+ + +A +AGK ++ + +E D L I G Sbjct: 620 GRKRILASKGGYGFLMPEEEALANRKAGKQVLNVGNEGAAF---CLEAVGDQLAVIGDNG 676 Query: 651 RMLMFPVSDLPQLSKGKGNKI 671 ++L+FP+ +LP++ +GKG K+ Sbjct: 677 KILIFPLEELPEMPRGKGVKL 697 >UniRef50_D0B2I0 DNA topoisomerase IV subunit A n=40 Tax=Rhizobiales RepID=D0B2I0_BRUME Length = 770 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 277/703 (39%), Positives = 421/703 (59%), Gaps = 46/703 (6%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 ER+ L E YL Y++ IM RALP + DGLKPV RRI++AM L LN + K AR Sbjct: 16 ERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYAKCAR 75 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 VGDV+GK+HPHGD++ Y+A+V +AQ F+ RYPLVDGQGN+G D + AAMRYTE+R+ Sbjct: 76 IVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDGDNA-AAMRYTEARM 134 Query: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 ++ + LLL + + D+ P ++ +EP +LP PN+L NG+ GIAVGMAT+IPPHN+ Sbjct: 135 TEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPPHNV 194 Query: 186 REVAQAAIALIDQPKTTLDQLLDI----------------------VQGPDYPTEAEIIT 223 E+ +A+ LI+ P +++L+ V+GPD+PT ++ Sbjct: 195 AELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGILVE 254 Query: 224 SRAEIRKIYENGRGSVRMRAVWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKK 278 I + Y GRG+ R+RA W KE+G +V++ +P+QV +R++E+IA + KK Sbjct: 255 EHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLLAKK 314 Query: 279 LPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRP 338 LP++DD+RDES + R+V+ P++ VD + +M LF T+LE +N+N++ P Sbjct: 315 LPLLDDIRDESAED--IRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKVP 372 Query: 339 AVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE 398 V +L +L EWL R++ + RR +RL ++ KRL IL G L+A+LN+DEVI IIR EDE Sbjct: 373 NVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREEDE 432 Query: 399 PKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458 PK LM F LT+ QAE+IL ++LR L KLEE +IR E +L E+ L+G+LAS + Sbjct: 433 PKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQW 492 Query: 459 NLLKKELQADAQAYGDDRRSPLQEREEAKAMS-EHD-------MLPSEPVTIVLSQMGWV 510 + E++A + +G R L +R A + HD M+ EPVTIV+S+ GW+ Sbjct: 493 KKISTEIKAVREKFGPTTR--LGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWL 550 Query: 511 RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPL 570 R+ KGH D L++K GD K A ++ ++F + G+ + I TLP RG GEP+ Sbjct: 551 RAMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPI 610 Query: 571 TGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL--PENA 628 + + + + KLL+ S G GF+ ++ VA R GK ++ + P+ A Sbjct: 611 RILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEA 670 Query: 629 HVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKI 671 + V + D + + + +ML+FP+SD+P++++GKG ++ Sbjct: 671 KLCQRV----SGDHIAVVGENRKMLVFPLSDIPEMTRGKGVRL 709 >UniRef50_D0HVU0 Topoisomerase IV subunit A n=3 Tax=Vibrio RepID=D0HVU0_VIBCH Length = 381 Score = 470 bits (1209), Expect = e-131, Method: Compositional matrix adjust. Identities = 226/368 (61%), Positives = 294/368 (79%), Gaps = 2/368 (0%) Query: 376 LEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRG 435 ++GLL+A+LN+DEVIEIIRNED+PK LM+RF LT+ QA+AIL+ KLRHLAKLEEMKIRG Sbjct: 1 MQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDIQADAILDTKLRHLAKLEEMKIRG 60 Query: 436 EQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDML 495 EQ ELEKER +L+ +L SER++NNLLKKE++ADA +GDDRRSPL EREEAKA++E D++ Sbjct: 61 EQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLM 120 Query: 496 PSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAI 555 PSE +T+VLS+ GW+R AKGHD+D LNYKAGD++ GKSNQ VF+ S GRSY++ Sbjct: 121 PSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYSL 180 Query: 556 DPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARN 615 + TLPSARGQGEP+TG+L + G T+ ++M +DQ L+ SDAGYGFVC +DL+++N Sbjct: 181 ESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKN 240 Query: 616 RAGKALITLPENAHVMPPVVIEDA-SDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINI 674 R+GKALI LPEN+ VM P VI D +D +LAIT GRML+FP+ DLPQLSKGKGNKIINI Sbjct: 241 RSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNKIINI 300 Query: 675 PSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLM-RGLQR 733 P+A+A E+ L+ L VLP +++T++ GKRK+ L+ +L GERGRRG L+ RGLQR Sbjct: 301 PAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDNFRGERGRRGALLPRGLQR 360 Query: 734 IDRVEIDS 741 + +EI++ Sbjct: 361 VTAIEIET 368 >UniRef50_Q5HJZ0 DNA gyrase subunit A n=200 Tax=Bacteria RepID=GYRA_STAAC Length = 887 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 271/691 (39%), Positives = 407/691 (58%), Gaps = 39/691 (5%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 S + ER E E ++L+Y+M VI+ RALP + DGLKPV RRI+Y ++E G+ +K Sbjct: 7 SRINERNITSEMRE-SFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYK 65 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VGDV+GKYHPHGDS+ YEAMV MAQ FSYRYPLVDGQGN+G+ D + AAMRYT Sbjct: 66 KSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGA-AAMRYT 124 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+R++K + LL ++ + T D++ N+DG +EP +LPAR PN+L NG +GIAVGMAT+IP Sbjct: 125 EARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIP 184 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNL E+ ++L P ++ +L++ ++GPD+PT A +I ++ IR+ YE GRGS++M Sbjct: 185 PHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPT-AGLILGKSGIRRAYETGRGSIQM 243 Query: 242 --RAVWKKEDGA---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 RAV ++ G +V++ +P QV+ AR++E+IA +R+KK+ + DLRDE+ R Sbjct: 244 RSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVR 303 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGL-DGRPAVKNLLEILSEWLVFRR 355 +VI R + + ++N+L+ T L+ S+ +NMI L +GRP + NL E L +L ++ Sbjct: 304 VVIDVRKD-ANASVILNNLYKQTPLQTSF--GVNMIALVNGRPKLINLKEALVHYLEHQK 360 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMS---RFGLTET 412 VRRR Y L K R HILEGL +A +IDE+I IR D K A+ S RF L+E Sbjct: 361 TVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEK 420 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QA+AIL+++LR L LE KI E +EL +L+ ILA E + L++ EL + Sbjct: 421 QAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRF 480 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV------------RSAKGHDIDA 520 GDDRR+ +Q + + + D++P E + I LS ++ R +G Sbjct: 481 GDDRRTEIQ-LGGFENLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRG----V 535 Query: 521 PGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPP 578 G+N D V ++ V+F + GR Y + +P S + +G P+ + L Sbjct: 536 QGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELEN 595 Query: 579 GATVDHML----MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPV 634 + M+ +ES+D L+ A+ G ++ NR GK I+ E+ ++ Sbjct: 596 DEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVR 655 Query: 635 VIEDASDMLLAITQAGRMLMFPVSDLPQLSK 665 + D+L+ + A ++ FP S L L + Sbjct: 656 LTSGQEDILIGTSHAS-LIRFPESTLRPLGR 685 >UniRef50_P0C0R0 DNA gyrase subunit A n=296 Tax=cellular organisms RepID=GYRA_STAES Length = 893 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 274/707 (38%), Positives = 416/707 (58%), Gaps = 32/707 (4%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 S + ER E E ++L+Y+M VI+ RALP + DGLKPV RRI+Y ++E G+ +K Sbjct: 7 SRINERNITSEMRE-SFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYK 65 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VGDV+GKYHPHGDS+ YEAMV MAQ FSYRYPLVDGQGN+G+ D + AAMRYT Sbjct: 66 KSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGA-AAMRYT 124 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+R++K + LL ++ + T D++ N+DG +EP +LPAR PN+L+NG GIAVGMAT+IP Sbjct: 125 EARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIP 184 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNL EV ++L P T+++L++ +QGPD+PT A ++ ++ IR+ YE GRGS++M Sbjct: 185 PHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPT-AGLVLGKSGIRRAYETGRGSIQM 243 Query: 242 RAVWKKEDGA-----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 R+ + E+ +V++ +P QV+ AR++E+IA +R+KK+ + DLRDE+ R Sbjct: 244 RSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVR 303 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGL-DGRPAVKNLLEILSEWLVFRR 355 +VI R + + ++N+L+ T L+ S+ +NMI L +GRP + NL E L +L ++ Sbjct: 304 VVIDVRKD-ANASVILNNLYKQTPLQTSF--GVNMIALVNGRPKLINLKEALIHYLEHQK 360 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMS---RFGLTET 412 VRRR Y L+K R HILEGL +A +IDE+I IR D K A+ S RF LTE Sbjct: 361 TVVRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTER 420 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QA+AIL+++LR L LE KI E +EL + +L+ ILA E + L++ EL + + Sbjct: 421 QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERF 480 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV--------RSAKGHDIDAPGLN 524 GD+RR+ +Q + + + D++P E + I LS ++ RS G+N Sbjct: 481 GDERRTEIQ-LGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMN 539 Query: 525 YKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATV 582 D V ++ V+F + GR Y + +P S + +G P+ + L T+ Sbjct: 540 TLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETI 599 Query: 583 DHML----MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIED 638 M+ +ES++ L+ A+ G + ++ N+ GK I E+ ++ + Sbjct: 600 STMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTG 659 Query: 639 ASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGED 684 D+L+ A ++ F S L L + G K I++ + G D Sbjct: 660 NEDILIGTAHAS-LIRFSESTLRPLGRTAAGVKGISLREGDTVVGLD 705 >UniRef50_A3VFM2 DNA topoisomerase IV, A subunit n=11 Tax=Alphaproteobacteria RepID=A3VFM2_9RHOB Length = 856 Score = 447 bits (1150), Expect = e-124, Method: Compositional matrix adjust. Identities = 270/754 (35%), Positives = 422/754 (55%), Gaps = 88/754 (11%) Query: 18 YLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPH 77 YL Y++ IM+RALP DGLKPV RRI++AM EL LN+ +F+KS++ GDV+G YHPH Sbjct: 66 YLTYALSTIMNRALPDARDGLKPVHRRILFAMRELRLNSGGRFRKSSKISGDVMGNYHPH 125 Query: 78 GDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELG 137 GD+A Y+AM +AQ F+ RYPLVDGQGN+G D AA RYTE+R++ +E LL L Sbjct: 126 GDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNP-AASRYTEARMTIVAEALLEGLD 184 Query: 138 QGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALID 197 + D+ N+DGTL+EP +LPA P++L NG GIAVGMAT+IPPHN+ E+ A + LI Sbjct: 185 EDAVDFRENYDGTLREPVVLPATFPHLLANGAAGIAVGMATNIPPHNISELVDACLHLIK 244 Query: 198 QPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GAV 252 P D LL+ + GPD+PT I+ R I + Y GRGS+R+R+ W+ ED + Sbjct: 245 TPDARDDTLLNYIPGPDFPTGGVIVEPRENIAEAYRTGRGSIRLRSKWEVEDLGRGQWQI 304 Query: 253 VISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVM 312 +++ +P+QV ++++E++A ++ KK+P++ D+RDES + R+V+ P++ V+ + +M Sbjct: 305 IVTEIPYQVQKSKLIEKLAEVIQTKKVPLLADVRDES--ADDVRIVLEPKTRNVEPEMLM 362 Query: 313 NHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRR-------LNY 364 LF +DLE + +N+N++ +DG P V +L E+L +L FRR+ + RR +++ Sbjct: 363 GLLFRNSDLEVRFSLNMNVL-IDGLTPKVCSLKEVLRAFLDFRREVLIRRSQHRMEKIDH 421 Query: 365 RLEKVLKRLHI-----------------------------------------------LE 377 RLE VL+ I L Sbjct: 422 RLE-VLEGFIIAFLNLDRVIDIIRYDDDPKAALMYEDWSRPHQDTIARATNEHDYVSPLA 480 Query: 378 GLLVAFLNIDE-----VIEIIRNED----EPKPALMSRFGLTETQAEAILELKLRHLAKL 428 G+ VA L + E EII + PK + GL++ QA+AIL ++LR L +L Sbjct: 481 GIDVASLELREDETATAPEIITDNTGSGATPKRFVGRSEGLSDVQADAILNMRLRSLRRL 540 Query: 429 EEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----RRSPLQER 483 EE+++ E+ L +ER L+ +L SE + EL+ + +G D RR+ E Sbjct: 541 EELELIRERDALMEERAGLEDLLDSEDLQWGRIGDELKDAKKKFGKDYVAGARRTQFAEA 600 Query: 484 EEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPV 543 E + M+ EPVTIV SQMGW+R+ GH +K GD + A ++ + Sbjct: 601 AEVPDVPLEAMIEREPVTIVCSQMGWIRAMSGHVDLTRDFKFKDGDGPRFAFHAETTDKI 660 Query: 544 VFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYG 603 + + GR Y + LP RG GEPL + LP + M + + D+KL++AS G G Sbjct: 661 IVFAANGRFYTLGASNLPGGRGMGEPLRLMVDLPNDVEIIDMFVHAPDRKLIVASKGGNG 720 Query: 604 FVCTFNDLVARNRAGKALITLPEN-AHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQ 662 F+ D+VA+ + GK ++ + ++ A ++ PV A D + +++ ++L+FP+++LP+ Sbjct: 721 FIVPEADVVAQTKNGKQVLNVSDDVAKLVKPV----AGDHVAVVSENRKLLVFPIAELPE 776 Query: 663 LSKGKGNKIINIPSAEAARG----EDGLAQLYVL 692 + +GKG ++ SA +G + GL+ L Sbjct: 777 MGRGKGVRLQKYGSARGRQGTLDLDGGLSDLTTF 810 >UniRef50_D0RNU6 DNA gyrase subunit A n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNU6_9RICK Length = 746 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 232/670 (34%), Positives = 389/670 (58%), Gaps = 30/670 (4%) Query: 18 YLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPH 77 YL Y++ I RALP + DGLKPV RR++YAM L L+ ++FKKSAR VGDV+GK+HPH Sbjct: 18 YLAYALSTITQRALPDVRDGLKPVHRRLIYAMYLLNLSPKSQFKKSARVVGDVIGKFHPH 77 Query: 78 GDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELG 137 GD + Y+A+V +AQ FS YPLV+GQGN+G D + AAMRYTE++L+K SE LL+++ Sbjct: 78 GDQSVYDALVRLAQDFSTHYPLVNGQGNFGNVDGDNA-AAMRYTETKLTKTSEYLLADIE 136 Query: 138 QGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALID 197 + T ++ +DG L EP++LP++ PNIL NG++GIAVGMAT IPPHN++E+ +A I L D Sbjct: 137 EETVNFKKTYDGELDEPEILPSQFPNILANGSSGIAVGMATSIPPHNVQEICEALIYLND 196 Query: 198 QPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GAV 252 P ++ LL ++GPD+PT + + EI K Y+ GRG +++ +K ED + Sbjct: 197 NPNCSIKDLLKFIKGPDFPTGGILNEDKKEIFKAYKTGRGFFEIKSKYKVEDLGRGLYQI 256 Query: 253 VISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVM 312 ++ +P+ V+ ++++E++A + NKK ++D + DESD + R+V+ P++ V+ + +M Sbjct: 257 AVTEIPYSVNKSKLIEKLAGIIINKKNKLLDHVSDESDEK--IRIVLRPKNRNVNPEDLM 314 Query: 313 NHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKR 372 N LF ++L+ +N+N++ P V NL EIL L R + ++N++L+K+ +R Sbjct: 315 NSLFEQSELKNKIFLNMNVLNEKNEPKVMNLKEILKSLLKHRYIILNNKINFKLKKIKRR 374 Query: 373 LHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMK 432 L IL+G ++ + N++++I+IIRN +PK L+ ++ T Q ++ILE++LR+L K+EE+ Sbjct: 375 LEILKGFIIVYKNLNQIIKIIRNSKDPKKELIKKYKFTLIQVDSILEMRLRNLKKIEELD 434 Query: 433 IRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----RRSPLQEREEAK 487 I+ E LE E+ +L IL S+ + E +GD+ RRS L E Sbjct: 435 IKKEFKNLELEKKRLSKILNSKTLQRKEINNEYTEVINEFGDNSTYGPRRSIL----EKF 490 Query: 488 AMSEHDMLPS-----EPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQP 542 D L S E + + L +++S KG + K D + K++ Sbjct: 491 VKFTDDELESKLEVIENINVSLINEKFLKSKKG----TYKRSEKNSDDVSLIINCKTSDQ 546 Query: 543 VVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGY 602 + + + G+SY ++ L +G ++ L L + + + + Q+++++S GY Sbjct: 547 ICLLSNIGKSYILNCSNLKFGSTKGFLISSYLKLKDEEKIVDLFVYKEKQEIILSSQNGY 606 Query: 603 GFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI----TQAGRMLMFPVS 658 GF DL ++GK + + +N +I D + + ++++F + Sbjct: 607 GFFVKSEDLFTNKKSGKKIFNIKKNDQFYGSCLINKEKDKFIVLFLKDNLKYKLIIFELK 666 Query: 659 DLPQLSKGKG 668 ++P L KG G Sbjct: 667 EVPYLQKGSG 676 >UniRef50_Q0W7S4 Type II DNA topoisomerase II (Gyrase), subunit A n=17 Tax=cellular organisms RepID=Q0W7S4_UNCMA Length = 826 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 264/722 (36%), Positives = 416/722 (57%), Gaps = 36/722 (4%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 + + E + +Y++Y+M VI+ RALP + DGLKPV RR +Y M ELG +KKSAR V Sbjct: 24 VQIEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRCLYGMYELGNTHDKPYKKSARVV 83 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 GDV+GKYHPHGD+A Y+ +V MAQ FS RY LVDGQGN+G+ D + AAMRYTE RL + Sbjct: 84 GDVMGKYHPHGDAAIYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDGA-AAMRYTEVRLER 142 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 +E +L++L + T D+ PNFD TL+EP +LPARLPN+L+NG++GIAVGMAT+IPPHNL E Sbjct: 143 IAEEILADLDKETVDFAPNFDETLKEPVVLPARLPNLLINGSSGIAVGMATNIPPHNLGE 202 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK- 246 + IA+ID P+ +LL+ V+GPD+PT A I + I++ Y GRGS+RMRA + Sbjct: 203 IVDGTIAVIDNPEIEPIELLNYVKGPDFPT-AGFIYGKEGIKEAYLTGRGSIRMRAKAEI 261 Query: 247 -KEDG--AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 E+G +++++ +P+ V+ AR++E IA +++KK+ + DLRDESD + +++ Sbjct: 262 VDENGKMSIIVTEIPYMVNKARLIESIADLVKDKKIEGISDLRDESDRDGMR--IVIELK 319 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLN 363 + + ++N LF T +E ++ +N N+ +D P +L E + ++ R++ V RR Sbjct: 320 KAANANVILNQLFKHTQMESTFGVN-NIALVDNTPMTLSLKETIGYFIKHRQEVVTRRSQ 378 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEAILEL 420 + L+K R HIL GLL+A NID+ + IIR N DE K LM ++GL++ Q+ AIL++ Sbjct: 379 FELKKAQAREHILAGLLIALTNIDDFVRIIRGSANADEAKATLMEKYGLSDEQSRAILDM 438 Query: 421 KLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPL 480 +L L LE KI E+++L KE L +LAS + + +++K EL YGD+RR+ + Sbjct: 439 RLARLTALERQKIDDERADLIKEIAHLNEVLASPQMVLDIIKAELLDMKAKYGDERRTKI 498 Query: 481 QEREEAKAMSEHDMLPSEPVTIVLSQMGWV--------RSAKGHDIDAPGLNYKAGDSFK 532 E A + + D++P E V + +S G++ R+ + + G+ K D Sbjct: 499 V--ESAGEIVDEDLIPVENVVVTISNTGYIKRMPVDTYRTQRRGGVGIVGMETKEEDFVV 556 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSA---RGQGEPLTGKLTLPPGATVDHM--LM 587 ++ ++F + G+ Y++ +P A + +G+ + + + PG ++ M + Sbjct: 557 DLFVASTHDNILFFSNKGKVYSLKVYEIPPAASRQARGKAIINLINIEPGEAINAMIPIK 616 Query: 588 ESDDQK-LLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI 646 DDQ L+M + G + G I L E+ + V + + S +L Sbjct: 617 TFDDQHFLVMCTREGTIKKTALSAFQNIRSTGIIAIGL-ESGDELISVKMTNGSQEVLIA 675 Query: 647 TQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH---VG 703 T+ G+ F S++ + G + + + +A V P QS LTI G Sbjct: 676 TRNGKCNRFSESEVRTM----GRPAMGVIGIRLTENDKVIAMEIVSPGQSVLTICENGFG 731 Query: 704 KR 705 KR Sbjct: 732 KR 733 >UniRef50_D1JED8 DNA gyrase subunit A n=1 Tax=uncultured archaeon RepID=D1JED8_9ARCH Length = 843 Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust. Identities = 241/577 (41%), Positives = 366/577 (63%), Gaps = 33/577 (5%) Query: 16 NAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYH 75 ++Y++Y+M VI+ RALP DGLKPV RRI+Y M ELG+ + KKSAR VGDVLGKYH Sbjct: 25 HSYMDYAMSVIVGRALPDARDGLKPVHRRILYGMHELGVTHNRPHKKSARIVGDVLGKYH 84 Query: 76 PHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSE 135 PHGD A Y+ MV MAQ FSYRYPLVDGQGN+G+ D + AAMRYTE+RLSK + LL + Sbjct: 85 PHGDVAVYDTMVRMAQDFSYRYPLVDGQGNFGSVDGDAA-AAMRYTEARLSKIAGELLVD 143 Query: 136 LGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIAL 195 L + T +W PNFD +L+EP++LPA+LPN+L+NG++GIAVGMAT++PPHNL EV I + Sbjct: 144 LEKDTVEWSPNFDNSLKEPQILPAKLPNLLINGSSGIAVGMATNMPPHNLTEVVDGVIRV 203 Query: 196 IDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW----KKEDGA 251 I++P+ ++++L+ I++ PD+PT I I++ YE GRGS+R+RA K + Sbjct: 204 IEEPEVSIEELMQIIKAPDFPTGGI-IIGYEGIKRAYETGRGSIRIRAKAEIEVKGKKER 262 Query: 252 VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQV 311 +VI+ +P+QV+ +R++E+IA + K+ + LRDESD + R+VI ++ + + Sbjct: 263 IVINEIPYQVNKSRLVEEIAEFAKKYKVESISGLRDESDRKG-MRIVIELKAG-ANSAII 320 Query: 312 MNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLK 371 +N L+ T LE ++ + +N+ +DG P V L E++ ++ R++ RRL Y LE+ K Sbjct: 321 LNRLYKHTQLENTFGV-INLALIDGEPRVLTLKELIECYIKHRKEVTIRRLQYELERAEK 379 Query: 372 RLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEAILELKLRHLAKL 428 RLHIL+GL++A NIDEVI +I+ + K AL++RF L+E QA+ IL+++L L+ L Sbjct: 380 RLHILKGLIIAISNIDEVIRLIKAASDTKTAKSALIARFELSEEQAKEILDMRLSRLSAL 439 Query: 429 EEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKA 488 E KI E++ELE + + L+ +L SE ++ LLK++L YGD RR+ + EE Sbjct: 440 ERDKIETERAELETKINWLKEVLGSEARIYELLKEDLIEQKDKYGDARRTNI---EEMVT 496 Query: 489 MSEHDMLPSEPVTIVLSQMGWV------------RSAKGHDIDAPGLNYKAGDSFKAAVK 536 +SE D + + V + L+Q +V R KG + + K D ++ Sbjct: 497 LSERDFVEEKEVILYLTQRDYVKRLPADIFKQQMRGGKGIAV----IEKKEDDKIVNFIR 552 Query: 537 GKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLT 571 + + ++F G++Y + +P S +G+PL Sbjct: 553 ASTRERLIFFTEFGKAYQVKTYEIPPSSRHSKGKPLV 589 >UniRef50_B5Y886 DNA gyrase, A subunit n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y886_COPPD Length = 758 Score = 434 bits (1115), Expect = e-120, Method: Compositional matrix adjust. Identities = 266/707 (37%), Positives = 409/707 (57%), Gaps = 48/707 (6%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 M+ + ER E + +Y++Y+M VI+ RALP + DGLKPVQRRI+Y+MSE G + + Sbjct: 1 MAGIHEREITEELKQ-SYIDYAMSVIVGRALPDVRDGLKPVQRRIIYSMSETGSTYNNPY 59 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 119 KKSAR VGDVLGKYHPHGD++ Y+A+V MAQ F RYPLVDG GN+G+ D DP AAMR Sbjct: 60 KKSARIVGDVLGKYHPHGDASVYDALVRMAQDFVMRYPLVDGHGNFGSMDGDPP--AAMR 117 Query: 120 YTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 179 YTE RL++ SE L+ +L + T +WVPNFDG+L+EP++LPA P +L+NG++GIAVG++T Sbjct: 118 YTEVRLTRLSEYLVQDLDKDTVNWVPNFDGSLKEPEVLPAVFPQLLVNGSSGIAVGVSTY 177 Query: 180 IPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSV 239 IPPHNL E+ A + + P+ T QL+ V+GPD+PT +II + ++ K+YE G+G + Sbjct: 178 IPPHNLGEIIDATLHFLHNPEATSRQLMRFVKGPDFPTGGQIINPQ-DLVKVYEEGKGVI 236 Query: 240 RMRAVWKKEDGA-----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENP 294 R+R K E+G +VI +P+ V+ A ++ QIA +R++KL VD++RDES+ + Sbjct: 237 RVRGRAKLEEGHGQKRRLVIYEIPYMVNKAELVSQIAQLIRDRKLSGVDEVRDESNRQGV 296 Query: 295 TRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGL-DGRPAVKNLLEILSEWLVF 353 V++ ++N L+ T LE S+ I NM+ L DG P L + ++ ++ F Sbjct: 297 R--VVLELKKGASFHHILNQLYEQTALENSFAI--NMVALKDGAPVQLTLRDYIASFVDF 352 Query: 354 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRN---EDEPKPALMSRFGLT 410 R++T+ RR Y L+K KR ++EG+L A NID VIEIIRN D+ K LMS+ GLT Sbjct: 353 RKETILRRTRYLLDKASKRREVVEGILKALDNIDLVIEIIRNAETTDQAKRRLMSQIGLT 412 Query: 411 ETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQ 470 E QAEA+LE+KLR L +E+ K+ E L K + IL SE K+ ++ +EL+ + Sbjct: 413 EVQAEAVLEIKLRSLVHMEKEKVEQELESLLKAIAEYTEILNSETKLLEVIAEELKHVKK 472 Query: 471 AYGDDRRSPL----QEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK 526 + D RR+ + Q+ E +A E I L + G +R +K Sbjct: 473 LFADQRRTLIGFSDQQTETVQA-------AEETFFIELLEYGIIRRSKTQ---------- 515 Query: 527 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHML 586 + ++ + + PV+F+ + G+ + I +P ++ +G L P G +L Sbjct: 516 --TNLVDFIEVQGSDPVMFLTNFGKIFCISAYEIPESQ-RGVALNA--LFPMGNDEKVLL 570 Query: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI 646 + + +Q+L+ S+ G G + +R G + P + M V++ S L+ I Sbjct: 571 LGTQNQELIAISEKGKGKRFRLDVEKIPSRGGYYFLLDPGD---MVSVIVPVTSKELVVI 627 Query: 647 TQAGRMLMFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVL 692 + G+ L V +P+ + G K++ + G L Q Y++ Sbjct: 628 SAQGKALRLDVESIPERGLRTGGVKVMRTYEGDRVVGATCLKQKYIV 674 >UniRef50_D1B8A6 DNA gyrase, A subunit n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B8A6_THEAS Length = 816 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 273/727 (37%), Positives = 422/727 (58%), Gaps = 48/727 (6%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 L L E +++Y++Y+M VI+ RALP DGLKPVQRRI+YAM ELGL S FKKSAR V Sbjct: 17 LPLEEEIKHSYIDYAMSVIVGRALPDARDGLKPVQRRILYAMRELGLRHSQPFKKSARVV 76 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLS 126 G+ +GKYHPHGD+A YE MV M+Q FS RYPLVDGQGN+G+ D DP AAMRYTE+RL Sbjct: 77 GETMGKYHPHGDAAIYETMVRMSQDFSMRYPLVDGQGNFGSIDGDPP--AAMRYTEARLH 134 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 E +L+++ + T DW+PNFD +L+EP +LP+R+PN+L+NG+TGIAVGMAT++PPHNLR Sbjct: 135 SLGEEMLADIDEDTVDWLPNFDESLEEPAVLPSRIPNLLVNGSTGIAVGMATNMPPHNLR 194 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 EV A L+D P + +L+ V GPD+PT +I R I Y GRG + +R + Sbjct: 195 EVVDACCTLLDNPDVEVGELMTHVPGPDFPT-GGVIMGRDGIIDAYTTGRGKIVVRGCAE 253 Query: 247 KEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 ED A+VI+ +P+ V+ + ++E I ++ +L + D+RDES+ E RLV+ Sbjct: 254 IEDAKRGKKAIVITQIPYMVNKSNLIETIVKGVQAGQLDGITDVRDESNREG-IRLVLEL 312 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 + D V+ L++ T L+ ++ + +N+ +DGRP NL +L ++ RR VRRR Sbjct: 313 HRDS-DPHLVLRQLYSRTQLQTTFGV-INLALVDGRPVELNLKGLLQIFIDHRRMVVRRR 370 Query: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP---KPALMSRFGLTETQAEAIL 418 YRL K +R HILEGL+ A ID VI +IR+ ++P K L+ G TE QA+AIL Sbjct: 371 TQYRLRKAEERAHILEGLVKALDMIDMVIALIRSSEDPLVAKGRLVEELGFTEAQAQAIL 430 Query: 419 ELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRS 478 +++L+ L LE+ K++ E +EL + + + IL ++++++++EL +AYGD+RR+ Sbjct: 431 DMRLQRLTSLEKHKLQEELAELMAQIARYRLILGDPAELDSVVREELLEVKRAYGDERRT 490 Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFK-AAVKG 537 ++ + +S D++P V + +++ G++R D + G K AAVKG Sbjct: 491 VIE--DSVDDVSYEDLIPETEVVVAMTRDGFIRRMPLQDYRC---QARGGKGVKGAAVKG 545 Query: 538 KSNQPVVFVDST----------GRSYAIDPITLPSAR-GQGEPLTGKLTLPPGATV---- 582 + +V V +T GR +++ + +P + G+G+ ++ ++L G +V Sbjct: 546 EDEVSLVAVTTTHRSLYLFTDRGRVFSLKCLAIPEPKSGRGKHVSTFISLDEGESVVTFR 605 Query: 583 DHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM 642 D L + + + + + G +L RAG+ ++ L E+ + V D Sbjct: 606 DSALEGA--RFVFLVTKMGLAKRLPVGELEGITRAGRRILGLEED-DTIARVRFTGGEDQ 662 Query: 643 LLAITQAGRMLMFPVSDL-PQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 LL T G+ L ++ PQ KG + I + + G D ++P + L I Sbjct: 663 LLLTTAKGQTLRVSETEFRPQGRAAKGVRGIKLDPDDLVVGCD-----VIMPGRQVLFIS 717 Query: 702 ---VGKR 705 +GKR Sbjct: 718 QLGMGKR 724 >UniRef50_B8CZP0 DNA gyrase, A subunit n=5 Tax=Bacteria RepID=B8CZP0_HALOH Length = 816 Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust. Identities = 234/568 (41%), Positives = 356/568 (62%), Gaps = 23/568 (4%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 + AYL+Y+M VI+ RALP + DGLKPVQRRI+YA+ +LG+ + KKSAR VG+VLGKY Sbjct: 20 KGAYLDYAMSVIVSRALPDVRDGLKPVQRRILYALHDLGITPNKPHKKSARVVGEVLGKY 79 Query: 75 HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLS 134 HPHGD+A Y+ MV MAQ FS+RYPLVDG GN+G+ D S AAMRYTE R+++ + LL Sbjct: 80 HPHGDTAVYDTMVRMAQEFSFRYPLVDGHGNFGSI-DGDSAAAMRYTEVRMARLTTELLR 138 Query: 135 ELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIA 194 ++ + T D+ PNFD +L+EP++LPARLPN+L+NG +GIAVGM+T+IPPHNL EV +A Sbjct: 139 DIDKNTVDFAPNFDESLEEPEVLPARLPNLLMNGVSGIAVGMSTNIPPHNLGEVIDGVVA 198 Query: 195 LIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED----- 249 LID P + L+ I++GPD+PT II + +I + Y+ GRG +++R + E+ Sbjct: 199 LIDNPDLEVKDLMKIIKGPDFPT-GGIIMGKDKIYQAYKTGRGRLKVRGKARIEEDKNGK 257 Query: 250 GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMD 309 ++I+ +P+QV+ AR++E+IA +R++K+ + DLRDESD R+VI + V Sbjct: 258 SKIIITEIPYQVNKARLVEKIANLVRDEKITGISDLRDESDRRG-LRIVIELKKGTVP-K 315 Query: 310 QVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKV 369 ++N L+ T L+ +Y + + + +DG P V L E+L+ +L +++ V RR Y+L+K Sbjct: 316 VILNRLYKYTQLQVTYGV-IMLALVDGMPRVLTLKELLNHYLEHQKEVVTRRTKYQLDKA 374 Query: 370 LKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEAILELKLRHLA 426 R HILEGL +A NID+++++IR + D + L+ F LTE QAEAIL ++L+ L Sbjct: 375 EARAHILEGLRIALANIDDIVQLIREAPDVDTARRGLIENFNLTEKQAEAILRMRLQRLT 434 Query: 427 KLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEA 486 LE KI E EL+++ + ILA E K+ ++K EL + + D+RR+ + +A Sbjct: 435 GLERDKIEAEYKELKEKIAYYRSILADEGKLLGIIKDELLELKEKFQDERRTEIS--IQA 492 Query: 487 KAMSEHDMLPSEPVTIVLSQMGWV--------RSAKGHDIDAPGLNYKAGDSFKAAVKGK 538 + D++P E V I L+ G++ RS + G+N K D + Sbjct: 493 VDLDVEDLIPEEQVVITLTHHGYIKRMPIDIYRSQRRGGKGIIGINTKEEDFVEHVFTTS 552 Query: 539 SNQPVVFVDSTGRSYAIDPITLPSARGQ 566 ++ +F + G+ Y + +P A Q Sbjct: 553 THHYFLFFTNKGKVYRLRVFEIPQASRQ 580 >UniRef50_P05653 DNA gyrase subunit A n=10 Tax=cellular organisms RepID=GYRA_BACSU Length = 821 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 259/732 (35%), Positives = 425/732 (58%), Gaps = 36/732 (4%) Query: 16 NAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYH 75 ++L+Y+M VI+ RALP + DGLKPV RRI+YAM++LG+ + +KKSAR VG+V+GKYH Sbjct: 20 TSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKSARIVGEVIGKYH 79 Query: 76 PHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSE 135 PHGDSA YE+MV MAQ F+YRY LVDG GN+G+ D S AAMRYTE+R+SK S +L + Sbjct: 80 PHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGD-SAAAMRYTEARMSKISMEILRD 138 Query: 136 LGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIAL 195 + + T D+ N+DG+ +EP ++P+R PN+L+NG GIAVGMAT+IPPH L E+ +A+ Sbjct: 139 ITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPHQLGEIIDGVLAV 198 Query: 196 IDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA---- 251 + P T+ +L++++ GPD+PT +I+ R+ IRK YE+GRGS+ +RA + E + Sbjct: 199 SENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRAKAEIEQTSSGKE 257 Query: 252 -VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQ 310 ++++ LP+QV+ A+++E+IA +R+KK+ + DLRDESD R+VI R + + + Sbjct: 258 RIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDR-TGMRIVIEIRRD-ANANV 315 Query: 311 VMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVL 370 ++N+L+ T L+ S+ INL + +DG+P V L + L +L ++ +RRR Y L K Sbjct: 316 ILNNLYKQTALQTSFGINLLAL-VDGQPKVLTLKQCLEHYLDHQKVVIRRRTAYELRKAE 374 Query: 371 KRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEAILELKLRHLAK 427 R HILEGL VA ++D VI +IRN + A L+ +F LTE QA+AIL+++L+ L Sbjct: 375 ARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQAILDMRLQRLTG 434 Query: 428 LEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAK 487 LE KI E L K +L+ ILA+E K+ ++++EL + + D+RR+ + + Sbjct: 435 LEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVT-SGLE 493 Query: 488 AMSEHDMLPSEPVTIVLSQMGWV--------RSAKGHDIDAPGLNYKAGDSFKAAVKGKS 539 + + D++ E + + L+ G+V RS K G+ D + + + Sbjct: 494 TIEDEDLIERENIVVTLTHNGYVKRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTST 553 Query: 540 NQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLMESD---DQKL 594 + ++F + G+ Y +P +G P+ L + G ++ ++ ++ + L Sbjct: 554 HDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIINLLEVEKGEWINAIIPVTEFNAELYL 613 Query: 595 LMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLM 654 + G + + G ++L E+ +M V + D + ++ T+ G ++ Sbjct: 614 FFTTKHGVSKRTSLSQFANIRNNGLIALSLREDDELM-GVRLTDGTKQIIIGTKNGLLIR 672 Query: 655 FPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEE 713 FP +D+ ++ + G K I + +D + + +L +S + I K K P E Sbjct: 673 FPETDVREMGRTAAGVKGITLTD------DDVVVGMEILEEESHVLIVTEKGYGKRTPAE 726 Query: 714 LQKVTGERGRRG 725 + T RG +G Sbjct: 727 EYR-TQSRGGKG 737 >UniRef50_O33926 DNA gyrase subunit A n=8 Tax=Thermotogaceae RepID=GYRA_THEMA Length = 804 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 261/766 (34%), Positives = 438/766 (57%), Gaps = 55/766 (7%) Query: 17 AYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHP 76 +YL YSM VI+ RA+P + DGLKPVQRRI+Y M ELGL ++ KKSAR VG+V+GKYHP Sbjct: 17 SYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPTKKSARIVGEVMGKYHP 76 Query: 77 HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSE 135 HGD+ Y+A+V MAQPF+ RYPL++GQGN+G+ D DP AAMRYTE+RL++ +E +L + Sbjct: 77 HGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSIDRDPP--AAMRYTEARLTRLAEEMLED 134 Query: 136 LGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIAL 195 + + T + + NFDGTL+EP++LP+++PN+++NG +GIAVGMAT+IPPHNL E A I L Sbjct: 135 IEKNTVNMIDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNIPPHNLSETVDALIYL 194 Query: 196 IDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA---- 251 ID P+ T+++L+ ++GPD+PT A ++ + +E++K+YE GRG + +R EDG Sbjct: 195 IDHPEATVEELMQFIKGPDFPTGA-VVVNASELKKVYEEGRGRIIVRGKVHVEDGKRVKR 253 Query: 252 VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQV 311 +VI+ +P+ VS A ++EQIA ++ + + ++RDESD ++ +P+ + + + Sbjct: 254 IVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRIVIEIPKD--ANEEVI 311 Query: 312 MNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLK 371 +N+L+ T L+ + + + +I RP + NL ++ +L R + +RRR Y E+ + Sbjct: 312 INNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFEVIRRRARYEYEQYTR 371 Query: 372 RLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEAILELKLRHLAKL 428 R H++EGLL A I V++I+RN + + A LM +TE QA+AIL+++L L L Sbjct: 372 RAHVVEGLLKAARAIGVVVDIVRNSKDVESARQSLMETLEITEEQAKAILDMRLSRLTSL 431 Query: 429 EEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKA 488 E ++ E S+L ++ +++ IL + K+ ++KKE Q YGD RR+ + +++ Sbjct: 432 EIENLQNEYSDLVRKISEVKEILEKDEKVKEIMKKEFLYLKQQYGDPRRTEVT--DQSIE 489 Query: 489 MSEHDMLPSEPVTIVLSQMGWVRSA----------KGHDIDAPGLNYKAGDSFKAAVKGK 538 +E +++ E V I LS G+++S G I L+ D + V K Sbjct: 490 YNEEELIVEEDVVITLSHKGYLKSTPLNSYRSQKRGGKGITVSKLS--EDDEVEFVVVAK 547 Query: 539 SNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHML-MESDDQKLL 595 + +F+ + GR+Y + L + +G +T L L + + + + + L+ Sbjct: 548 NTSSTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEKIVALASLNGEGRDLV 607 Query: 596 MASDAGYGFVCTFNDL--VARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRML 653 +A+ +G + NR +A+ P + ++ V+ + L+ T+ G + Sbjct: 608 IATKSGKIKRTALKEFENATSNRGVRAIKIEPGD-EIVSARVVNSEKETLIVATKMGMAI 666 Query: 654 MFPVSDLPQLSKGKGNKIINIPSAEAARGEDG--LAQLYVLPP---QSTLTIH---VGKR 705 FPVSD+ ++ + N +A + + G + + V+PP LT+ GKR Sbjct: 667 RFPVSDVRRMGR-------NAAGVQAIKLQPGDEVVSVDVIPPGEEGEILTVTEKGFGKR 719 Query: 706 KIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 P +L ++ + R GT +R + +++ R GD E Sbjct: 720 T----PVQLYRI---QRRGGTGLRNISDVNKTGYVVAVRYVRGDEE 758 >UniRef50_C9KLW4 DNA gyrase, A subunit n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KLW4_9FIRM Length = 808 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 263/725 (36%), Positives = 414/725 (57%), Gaps = 49/725 (6%) Query: 11 HEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDV 70 HE +N+Y++Y+M VI+ RALP + DGLKPV RRI+YAM E G+ ++ +KKSAR VG+V Sbjct: 15 HEM-KNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSNKPYKKSARIVGEV 73 Query: 71 LGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYS 129 LGKYHPHGDS+ Y+A+V MAQ FS RY L DG GN+G+ D DP AAMRYTE R+SK + Sbjct: 74 LGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDPA--AAMRYTEVRMSKIA 131 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 EL+L ++ + T D+ PN+D +L+EP++LPA+ P +L+NGT+GIAVGMAT+IPPHN+ EV Sbjct: 132 ELMLQDIDKETVDFTPNYDESLKEPEVLPAKFPQLLVNGTSGIAVGMATNIPPHNMCEVI 191 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED 249 + LID P T+D L+ +++GPD+PT A +I + IR+ Y GRG ++MRA + E Sbjct: 192 DGTLMLIDHPDATIDDLMKVIKGPDFPT-AGLILGQDGIRQAYTTGRGVIKMRANARIET 250 Query: 250 GA-----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 + ++++ LP+QV+ AR++E+IA +R+K++ + L DESD R+VI R + Sbjct: 251 LSNGKPRIIVTELPYQVNKARLVEKIAQLVRDKQIEGITALNDESDR-GGMRIVIDLRRD 309 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 364 + + ++N L+ T L+ S+ + + + +DG+P + NL E+L ++ + D + RR Y Sbjct: 310 -ANANVILNQLYKHTQLQDSFGV-IMLALVDGKPKILNLKEVLHYYIAHQEDVITRRTRY 367 Query: 365 RLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQAEAILELK 421 L+K R HILEGL +A ++D VI IR D + AL+S F L+E QA+AIL+L+ Sbjct: 368 DLKKAEARAHILEGLTIALDHLDAVITTIRESRTADIARAALISGFKLSEKQAQAILDLR 427 Query: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQ 481 L+ L LE KI E E+ K ++ + ILA E ++ ++K EL+A +GD RR+ L Sbjct: 428 LQRLTGLEREKIEEEYQEVLKAIEEYKAILADEGRILAIIKDELKAVKAKFGDARRTRLT 487 Query: 482 EREEAKAMSEHDMLPSEPVTIVLSQMGWV------------RSAKGHDIDAPGLNYKAGD 529 + + D++ E V I L+ ++ R KG G+ K D Sbjct: 488 --VDTSEIDVEDLIAEEDVVITLTHNNYIKRMALDTYRRQNRGGKG----IKGMPTKEKD 541 Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHMLM 587 + + ++ ++F + GR Y + + A +G + L L + ++ Sbjct: 542 FVENLLITTTHHTILFFTNRGRVYHLKAYEIAEASRAAKGTAIINLLQLEKDEKITAVIQ 601 Query: 588 ESD---DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLL 644 D L MA+ G + + ++ G I L ++ ++ + DM+L Sbjct: 602 VKGFNPDAYLFMATKKGIVKKTSLVEFKNLHKGGLNAINLDDDDELIGVKFTDGERDMIL 661 Query: 645 AITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHV- 702 T+ G ++F D+ + + +G K I++ + G D L+ P LT+ Sbjct: 662 G-TKWGMAIVFGEDDVRAMGRAARGVKGISLNDGDEVIGMDTLS-----PNAEVLTVTAE 715 Query: 703 --GKR 705 GKR Sbjct: 716 GYGKR 720 >UniRef50_C8WIN1 DNA gyrase, A subunit n=39 Tax=Bacteria RepID=C8WIN1_EGGLE Length = 932 Score = 424 bits (1090), Expect = e-117, Method: Compositional matrix adjust. Identities = 256/688 (37%), Positives = 396/688 (57%), Gaps = 40/688 (5%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 + ++L Y+M VI+ RALP + DGLKPV RRI+YAM+E G + KSARTVGDV+GKY Sbjct: 96 QTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSARTVGDVIGKY 155 Query: 75 HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLS 134 HPHGDSA Y+ MV +AQPFS R PLVDG GN+G+ D + AAMRYTESRL K + LL Sbjct: 156 HPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDGA-AAMRYTESRLDKVAMELLR 214 Query: 135 ELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIA 194 +L + T D+ PN+D +L+EP +LPAR PN+L+NG+ GIAVGMAT+IPPHNL E A Sbjct: 215 DLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNLGETIDATCL 274 Query: 195 LIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDG---- 250 ++D P T ++L+ + GPD+PT II + IR YE GRGS+ +RA K E+G Sbjct: 275 MLDNPDVTTEELMKALPGPDFPT-GGIIMGKKGIRDAYETGRGSLTVRAKCKVEEGKNGR 333 Query: 251 -AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMD 309 ++V++ +P+QV+ R+LE++ +R KKLP + ++ D +D +I+ Sbjct: 334 SSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGID--IIIDLKKDAIPQ 391 Query: 310 QVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKV 369 V+N L+ T L+ + + + + +DG P V +L E+L ++ + + + RR Y L K Sbjct: 392 VVLNKLYKHTQLQVGFGVIMLSL-VDGAPRVLSLKEMLHYYIAHQEEVIVRRTRYELAKA 450 Query: 370 LKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEAILELKLRHLA 426 +R HILEGL++A NIDEVI IIR+ K A + RFGLT+ Q AILE++LR L Sbjct: 451 EERAHILEGLIIALDNIDEVIHIIRSSQTDKEAAERMTERFGLTDKQTAAILEMRLRRLT 510 Query: 427 KLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEA 486 LE KI E EL ++ + +L+ ++ +++++K+EL + +G RR+ L E A Sbjct: 511 GLEHQKIEDELKELLEKIAYFKRVLSDDQLVHDIIKEELSEVKKKFGSPRRTLLS--EAA 568 Query: 487 KAMSEHDMLPSEPVTIVLSQMGWV------------RSAKGHDIDAPGLNYKAGDSFKAA 534 K + D++ E + + +++ G+V R KG G+N K D + Sbjct: 569 KDLDVEDLIAEESMVVTMTKAGYVKRLPVATYRQQKRGGKG----MSGVNLKDNDYVEHL 624 Query: 535 VKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLMESD-- 590 ++ ++F + G+ Y + LP A +G + L L G T+ ++ D Sbjct: 625 FVASTHSYMLFFSTKGKVYRLKVYELPEASRHARGTAIVNLLPLEKGETISAVIATKDFP 684 Query: 591 -DQKLLMASDAGYGFVCTFNDLVARNRA-GKALITLPENAHVMPPVVIEDASDMLLAITQ 648 D+ L+ A++ G T DL R R G I+L +N ++ + +L+ ++ Sbjct: 685 SDEYLMFATEHGM-VKKTSMDLYDRTRRDGLIAISLKDNDRLISVKRVAPGEKVLM-VSS 742 Query: 649 AGRMLMFPVSDLPQLSKGK-GNKIINIP 675 AG+ +M+ ++ + + G + +N+P Sbjct: 743 AGKAIMWDEGEVRAMGRDTMGVRGMNVP 770 >UniRef50_Q9ZLD9 DNA gyrase subunit A n=50 Tax=Campylobacterales RepID=GYRA_HELPJ Length = 828 Score = 420 bits (1080), Expect = e-116, Method: Compositional matrix adjust. Identities = 258/673 (38%), Positives = 395/673 (58%), Gaps = 30/673 (4%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 E +YL YSM VI+ RALP DGLKPV RRI+YAM ELGL + +KKSAR VGDV+GKY Sbjct: 22 EESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKKSARIVGDVIGKY 81 Query: 75 HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLS 134 HPHGD+A Y+A+V MAQ FS R LVDGQGN+G+ D + AAMRYTE+R++K SE +L Sbjct: 82 HPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNA-AAMRYTEARMTKASEEILR 140 Query: 135 ELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIA 194 ++ + T D+VPN+D TL+EP +LP+RLPN+L+NG GIAVGMAT IPPH + E+ A Sbjct: 141 DIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPHRIDEIIDALAH 200 Query: 195 LIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA---VWK-KEDG 250 ++ P LD++L+ V+GPD+PT II +A I + Y+ GRG V++RA V K K Sbjct: 201 VLGNPNAELDKILEFVKGPDFPT-GGIIYGKAGIVEAYKTGRGRVKVRAKVHVEKTKNKE 259 Query: 251 AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQ 310 +V+ +P Q + A+++EQI+ R K++ + ++RDESD E R+VI + + + + Sbjct: 260 IIVLGEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG-IRVVIELKRDAMS-EI 317 Query: 311 VMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVL 370 V+NHL+ T +E ++ I L I + P + LLE+L +L R+ + RR + LEK Sbjct: 318 VLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLRLFLNHRKTIIIRRTIFELEKAK 376 Query: 371 KRLHILEGLLVAFLNIDEVIEIIRNEDEP---KPALMSRFGLTETQAEAILELKLRHLAK 427 R HILEG L+A NIDE++ +I+ P K AL+ RF L+E Q++AILE++L+ L Sbjct: 377 ARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALIERFSLSEIQSKAILEMRLQRLTG 436 Query: 428 LEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAK 487 LE KI+ E L + D L GIL SE ++N ++K EL + + RR+ +QE E Sbjct: 437 LERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTEIQESYE-- 494 Query: 488 AMSEHDMLPSEPVTIVLSQMGWV---------RSAKGHDIDAPGLNYKAGDSFKAAVKGK 538 ++ D++ +EP+ + +S G+V R +G G Y+ D + Sbjct: 495 SIDTEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGSTYE-DDFIENFFVAN 553 Query: 539 SNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHMLME---SDDQK 593 ++ ++F+ + G+ Y + +P A G+ + ++L P + L SD++ Sbjct: 554 THDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPNEKIMATLSTKDFSDERS 613 Query: 594 LLMASDAGYGFVCTFNDLVA-RNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRM 652 L + G ++ R+ +G I L E ++ V++ + LL + G Sbjct: 614 LAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASYLGMF 673 Query: 653 LMFPVSDLPQLSK 665 + FP+ D+ ++ + Sbjct: 674 IKFPLEDVREIGR 686 >UniRef50_Q1D9G9 Type II DNA topoisomerase, A subunit n=3 Tax=Myxococcales RepID=Q1D9G9_MYXXD Length = 813 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 274/739 (37%), Positives = 423/739 (57%), Gaps = 44/739 (5%) Query: 18 YLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM-SELGLNASAKFKKSARTVGDVLGKYHP 76 Y+NY++ VI RALP + DGLKPVQRRI++ M + L AK++KSA+ VG V+G+YHP Sbjct: 68 YINYALSVITSRALPDVRDGLKPVQRRILFGMFHDHRLTHEAKYQKSAKVVGSVMGQYHP 127 Query: 77 HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSEL 136 HGD++ YEA+V MAQ FS RYPLVDG GN+G+ D + AAMRYTE RL+ S LL+EL Sbjct: 128 HGDASIYEALVRMAQDFSLRYPLVDGHGNFGSLDGDGA-AAMRYTECRLAMLSSELLTEL 186 Query: 137 GQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALI 196 G+ T + P +DGTLQEP ++PAR+P +L+NGTTGIAVGMAT+IPPH+L E+ A +ALI Sbjct: 187 GKKTVAFRPTYDGTLQEPVVIPARVPQLLMNGTTGIAVGMATNIPPHHLGELVDALVALI 246 Query: 197 DQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GA 251 + P+ LL V+GPD+PT +I+ + E+R IYE+G+GS+R+R +K ED Sbjct: 247 ENPQLLTKDLLKWVKGPDFPTGGQILNDKKELRDIYESGQGSIRIRGEYKLEDLKRGGQQ 306 Query: 252 VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQV 311 +VI+++P+ V+ + ++ + +R +KLP++ D+RDES + R+V+ + + + + V Sbjct: 307 IVITSIPYTVNKSTLVAKFGDLVRERKLPLITDVRDESTKD--VRIVLELKKD-ANPELV 363 Query: 312 MNHLFATTDLEKSYRINLN-MIGLDGRPAVK-----NLLEILSEWLVFRRDTVRRRLNYR 365 M +L+ T L+ ++ +NL ++ + +P + NL +IL +L FR D V +R + Sbjct: 364 MAYLYKQTPLQTNFGVNLTCLVPIKDKPELSTPERLNLRDILWYFLTFRFDVVTKRFEHE 423 Query: 366 LEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEAILELKL 422 L ++L+R+HILEG + +DE+I+IIR + + A L++RF L E Q +AILE+KL Sbjct: 424 LGELLRRVHILEGFEKVYDALDEMIKIIRASEGKQDAARKLIARFKLDEAQVDAILEMKL 483 Query: 423 RHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPL-Q 481 LA+LE + + E E E ++QGIL + K+ ++ EL Y D RR+ + Sbjct: 484 YKLARLEILVVEKELKEKRAEIKRIQGILKDKNKVWGTVRDELGEMKARYNDKRRTRIGG 543 Query: 482 EREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN-YKAGDSFKAAVKGKSN 540 E S + E +V+++ GWV+ + ++ P + GD+ A + G Sbjct: 544 AGSEEMEFSAEAFIADEDAHVVITRDGWVKRVR--EVKDPSTTRLREGDAVMAVLAGSLK 601 Query: 541 QPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDD------QKL 594 +V + G +Y +P++ G GEP+ G V L S D QKL Sbjct: 602 ANLVLFSNFGTAYVTRFNDVPASTGYGEPVQKFFKFDDGERVVSAL--SLDARLPRPQKL 659 Query: 595 LMASDAGYGFVCTFN-DLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRML 653 + + G G L RAG+ E ++ + D D+L +T+ L Sbjct: 660 VGVTKQGMGMRFLLEPHLEVSTRAGRRYAKTGEGDEIIGVQPVTD-RDLLAVLTEKTSAL 718 Query: 654 MFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQ--STLTIHVGK-RKIKL 709 + V+++ +L+ GKG +I + + R D LA V P Q + L K RK+ L Sbjct: 719 VCKVAEVNELAGPGKGVTVIKVDGGD--RVVDFLA---VSPAQKDAKLEFETQKGRKLHL 773 Query: 710 RPEELQKVTGERGRRGTLM 728 P + + VTG RG +G M Sbjct: 774 SPAKYE-VTG-RGGKGHEM 790 >UniRef50_B8CXA6 DNA gyrase subunit A n=1 Tax=Halothermothrix orenii H 168 RepID=B8CXA6_HALOH Length = 796 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 235/614 (38%), Positives = 368/614 (59%), Gaps = 23/614 (3%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 M++ +A+ + +++YL+YS+ VI RALP + DGLKPV RRI+YA ELGL Sbjct: 1 MAEKIRSIAIEDKMKDSYLSYSLSVIASRALPDVRDGLKPVHRRILYAARELGLTHDKPH 60 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VG+VLGKYHPHGD++ Y+AMV MAQ F+ RY L+DG GN+G+ D S AAMRY Sbjct: 61 KKSARIVGEVLGKYHPHGDASVYDAMVRMAQYFNQRYCLIDGHGNFGSIDGD-SPAAMRY 119 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RL++ +E +++++ Q T D+V NFDG+LQEP++LP ++PN+L+NG +GIAVGM+T I Sbjct: 120 TEARLTELAEDIMADITQDTVDFVDNFDGSLQEPEILPTKVPNLLINGASGIAVGMSTSI 179 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL EV A + L+ P L+ ++ + GPD+PT A+I+ + I+K Y+ G G + Sbjct: 180 PPHNLGEVVDAMVHLLKHPNAKLETIMKYIPGPDFPTGAKIV-GLSGIKKAYKTGNGKIT 238 Query: 241 MRAVWKKEDGA----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 +RA + E ++I +P+ ++ ++LE IA + K+ V DLRDESD E R Sbjct: 239 LRARTQIEKKGRKKQIIIKEIPYHLNKVKLLEDIAELINKGKIDNVSDLRDESDQEG-LR 297 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR-PAVKNLLEILSEWLVFRR 355 +V+ +S D D ++N L+ T L+ +YRI NM+ LDG+ P V +L+ IL ++ FRR Sbjct: 298 IVVELKSG-ADPDIILNQLYKFTSLQTNYRI--NMLALDGKQPRVMDLITILKNFINFRR 354 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTET 412 + RR Y+L K +R H+L+GL+ A +D VI IIR+ K A L + +TE Sbjct: 355 QVITRRTKYKLNKAKERFHLLQGLITAIDKLDLVISIIRHSKSTKEARQKLQEKLVITEK 414 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QAEAIL ++L+ L +EE K+ E + LE++ + IL ++ +++ +LKKEL Y Sbjct: 415 QAEAILRMRLQKLVGMEEEKLHQESAGLEEQIKYYKKILNNKNELDKVLKKELLDIKNKY 474 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFK 532 D R++ + E EE + + D++ E V + S ++ + G N D Sbjct: 475 ADKRKTEIIEDEEKAIIEKTDLIKKEKVFLTFSYRQNIKRTTSSEYARAGKN----DYII 530 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARG--QGEPLTGKLTLPPGATVDHMLM--- 587 + G + ++F +TG Y + +P G G+ + L +P + ++ Sbjct: 531 DTMTGTTLDTLLFFTNTGDVYTLPVHKIPEHHGLSTGDNIKDFLKIPLSKKIVKVICLNE 590 Query: 588 ESDDQKLLMASDAG 601 E+ ++ + +A+ G Sbjct: 591 ETKEKYITIATKQG 604 >UniRef50_A9F3U1 DNA gyrase subunit A n=3 Tax=Myxococcales RepID=A9F3U1_SORC5 Length = 800 Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust. Identities = 276/753 (36%), Positives = 408/753 (54%), Gaps = 50/753 (6%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM-SELGLNASAKFKKSARTV 67 +L + + YLNY++ VI RALP + DGLKPVQRRI+YAM +L L AK++KSA V Sbjct: 37 SLADEAQRRYLNYALSVITSRALPDVRDGLKPVQRRILYAMLHDLHLGPDAKYRKSAAVV 96 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 GDV+GKYHPHGD A Y+AMV +AQ F R PL+ G GN+G+ D + AAMRYTE++L Sbjct: 97 GDVMGKYHPHGDVAIYDAMVRLAQDFVMRAPLIAGHGNFGSVDG-DAPAAMRYTEAKLRP 155 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 + LLSELGQ T D+ PN+DGT EP +LP+R PN+L+NG+ GIAVGMAT IPPHNL E Sbjct: 156 LALELLSELGQRTVDFRPNYDGTRFEPIVLPSRFPNLLVNGSQGIAVGMATSIPPHNLGE 215 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 V A +ALI+ + T +LL V+GPD+PT ++ ++ E+ +Y G+GS+++R W+ Sbjct: 216 VIDACVALIENRELTTHRLLSYVKGPDFPTGGQLHATKKELEAVYTAGQGSLKLRGEWQL 275 Query: 248 EDG--------AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 E+G +VI+++P+ + ++E+IA + +KKLP + D+RDES E R+V+ Sbjct: 276 EEGDGKRGAAPQIVITSIPYGIERKAIVEKIAEVILSKKLPTLVDVRDESTGE--VRIVM 333 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLN-MIGLD----GRPAVKNLLEILSEWLVFR 354 + D VM +L+ T L + ++NL ++ D P L EIL+++L FR Sbjct: 334 ELKRG-ADAQLVMAYLYKQTPLAINVQVNLTCLVPTDNAEIAAPRRLGLHEILTKFLDFR 392 Query: 355 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTE 411 TV RRL + L ++ +R+ ILEG F +DEVI IIR + A LM RF L E Sbjct: 393 YATVTRRLEFELGELRRRITILEGFEKIFDALDEVIRIIRKSEGKADAAEKLMKRFTLNE 452 Query: 412 TQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQA 471 Q +AILELKL LA+LE + ++ + E E +++G+L S+ K +++ EL + Sbjct: 453 EQTDAILELKLYRLARLEILLVQKDLGEKRAEAKRIEGLLRSDAKRWGIVRDELVEIKGS 512 Query: 472 YGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSF 531 YG+ RR+ + + D + +E ++LS GWV+ + D + GDS Sbjct: 513 YGEKRRTKVVGSIDEPEYQAEDFIVAEDANVILSAQGWVKRVR-EVKDLASTRIREGDSV 571 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDD 591 AAV G + V F + G Y +P + G G+P+ L G + LM D Sbjct: 572 LAAVAGSTRSTVAFFSNLGACYVCRIHDVPQSTGYGDPVQKLFKLADGERL-IALMSFDP 630 Query: 592 QKL-----------------LMASDAGYGFVCTFN-DLVARNRAGKALITLPENAHVMPP 633 + L L + G GF + R+G+ L E V+ Sbjct: 631 RALDVPAQTPDSAEPEPPFALAITRGGLGFRFSLRPHRDPSTRSGRRFAKLNEGDEVLFV 690 Query: 634 VVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVL 692 + D +D +L + L V +L LS GKG+ ++ + A GE + L Sbjct: 691 HAV-DGADRVLCASSDAWALSVAVEELALLSGPGKGSVVMRV-----AEGERLVGAALAL 744 Query: 693 PPQSTLTIHVGKRKIKLRPEELQKVTGERGRRG 725 P +T+ K K K+ G+RG +G Sbjct: 745 GPSDVITVET--EKGKTLEIAASKIAGQRGTQG 775 >UniRef50_Q9RT53 DNA gyrase, subunit A n=2 Tax=Bacteria RepID=Q9RT53_DEIRA Length = 812 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 252/665 (37%), Positives = 390/665 (58%), Gaps = 32/665 (4%) Query: 18 YLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPH 77 ++NY+M VI+DRALP + DG+KPVQRRI+YAM + GL ++ K KSA VG+V+ +YHPH Sbjct: 17 FINYAMNVIVDRALPDVRDGMKPVQRRIMYAMLQEGLASNVKHAKSASVVGEVMKRYHPH 76 Query: 78 GDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELG 137 GDS+ Y+AMV + Q ++ RY LVD QGN+G+ D + AAMRYTE+R++K +E +L++L Sbjct: 77 GDSSIYDAMVRLGQWWNMRYTLVDPQGNFGSMDGDMA-AAMRYTEARMTKVAEEILADLE 135 Query: 138 QGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALID 197 + T D PN+D T EP +LP+ +PN+L+NG +GIAVGMAT+IPPHNL E++ +ALID Sbjct: 136 KETVDLKPNYDETTTEPTVLPSAVPNLLINGASGIAVGMATNIPPHNLTEISNGLLALID 195 Query: 198 QPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA-----V 252 P TLD+++ VQGPD+PT I ++ IR+ Y G +++R + E+G + Sbjct: 196 NPAITLDEMMTHVQGPDFPTGGRI--AKVGIREAYATGHAGLKVRGKARIEEGKNGRTQI 253 Query: 253 VISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQ-V 311 +IS +P+Q++ +L+ I+A + K+P + LRDESD + P R+VI + + M V Sbjct: 254 IISEIPYQLNKTNLLQTISAMYKAGKIPDIGALRDESDRKEPVRIVIELKRSAAGMGTLV 313 Query: 312 MNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLK 371 +N L+ T L+ SY + +N+ ++G P V L++ + +L RRD V RR Y L K + Sbjct: 314 LNQLYKYTQLQSSYTV-MNLSIVNGEPRVLPLIDTMRYFLDHRRDVVTRRTVYDLRKAKE 372 Query: 372 RLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQAEAILELKLRHLAKL 428 R H+LEGLL A +IDEVI +IR + E + LM+RFGL+E QA+AIL+++L+ L L Sbjct: 373 RAHVLEGLLKALDHIDEVISLIRASNTGAEARDGLMARFGLSEIQAQAILDMRLQRLVGL 432 Query: 429 EEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKA 488 E K++GE EL+K +L+ IL E+ + +KKE++ YGD RRS + E EE Sbjct: 433 EREKLQGEYDELQKTITRLESILGDEKLLWREIKKEIRDIRDRYGDARRSVITELEE--D 490 Query: 489 MSEHDMLPSEPVTIVLSQMGWV--------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSN 540 +++ D++ E + I +++ G+V R K + G + D+ G ++ Sbjct: 491 INKEDLIAVEDMVITMTRAGYVKRTNLTAYREQKRGGRGSSGGKLREEDANTGVFVGSTH 550 Query: 541 QPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHML-----MESDDQ--K 593 ++F GR + LP A G+ T L PG D + + DQ Sbjct: 551 DYLLFFTDQGRVFHEKIYDLPEA-GRDAKGTHIRNLLPGLRDDENIASVLSVSGFDQPGS 609 Query: 594 LLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRML 653 + A+ +G D AG I L ++ + +D D++LA T+ G+ + Sbjct: 610 FIFATKSGVIKKSLITDYANITSAGLIAINLQPGDELIGVDIQQDGDDVVLA-TKNGQAM 668 Query: 654 MFPVS 658 F + Sbjct: 669 RFEAT 673 >UniRef50_C4UA00 DNA topoisomerase 4 subunit A n=9 Tax=Bacteria RepID=C4UA00_YERAL Length = 265 Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust. Identities = 197/264 (74%), Positives = 231/264 (87%), Gaps = 1/264 (0%) Query: 489 MSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDS 548 MSEHD++PSEPVTIVLS+MGWVRSAKGHDID GL+YKAGDSF+AA +G SNQPVVF+DS Sbjct: 1 MSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAGDSFRAAARGMSNQPVVFIDS 60 Query: 549 TGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTF 608 TGRSYA+DP+TLPSARGQGEPLTGKLT PPGA ++ +LM DDQKLLMASDAGYGFVCTF Sbjct: 61 TGRSYALDPLTLPSARGQGEPLTGKLTPPPGAAIEQVLMAPDDQKLLMASDAGYGFVCTF 120 Query: 609 NDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKG 668 NDLVA+NRAGK +ITLPENA +PP+ I DMLL+IT AGRMLMFPV+DLP+LSKGKG Sbjct: 121 NDLVAKNRAGKTMITLPENAKALPPLEIHGPDDMLLSITAAGRMLMFPVADLPELSKGKG 180 Query: 669 NKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGT-L 727 NKI++IP+A+AA GED LA L+VLPPQ+++T+H GKRK+ LRPE+LQK ERGR+G+ L Sbjct: 181 NKIVSIPAAQAAAGEDRLAWLFVLPPQTSVTLHFGKRKLTLRPEDLQKFRAERGRKGSPL 240 Query: 728 MRGLQRIDRVEIDSPRRASSGDSE 751 RGLQRIDRV+ID+P R DSE Sbjct: 241 PRGLQRIDRVDIDAPPRVIPTDSE 264 >UniRef50_C6XXU9 DNA gyrase, A subunit n=14 Tax=Bacteria RepID=C6XXU9_PEDHD Length = 869 Score = 414 bits (1063), Expect = e-114, Method: Compositional matrix adjust. Identities = 242/682 (35%), Positives = 398/682 (58%), Gaps = 39/682 (5%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 +D R+ + E +AY++YSM VI+ RALP + DGLKPV RR++Y M +LGL + +K Sbjct: 10 NDKIIRIDIDEQMRSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMLDLGLANNKPYK 69 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VG+VLGKYHPHGD++ Y MV MAQ +S RY +V+GQGN+G+ D S AAMRYT Sbjct: 70 KSARIVGEVLGKYHPHGDASVYNTMVRMAQEWSLRYLMVEGQGNYGSI-DGDSPAAMRYT 128 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+R K +E +L+++ + T D+ NFD +LQEP +LP+++PN+L+NG++GIAVGMAT++P Sbjct: 129 EARFQKIAEDMLADINKDTVDFQLNFDDSLQEPTVLPSKVPNLLINGSSGIAVGMATNMP 188 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHN+ E A IA ID + T+ +L+ ++ PD+PT A II +++ +E GRG + M Sbjct: 189 PHNITETINATIAYIDNNEITIAELMKFIKAPDFPTGA-IIYGYTGVQEAFETGRGRIVM 247 Query: 242 RAVWK----KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 RA + K+ ++++ +P+QV+ A+++E+ A + KKL + +++DES+ + + Sbjct: 248 RAKAEIEAAKDREVIIVTEIPYQVNKAQMIERTAELVGEKKLEGISNIKDESNKDGIRIV 307 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 + R + V+N+LF T L+ S+ +N N+ + GRP + NL +++ ++ R + Sbjct: 308 YEIKRDANASI--VLNNLFKQTALQTSFSVN-NIALVKGRPQLLNLRDLIHYFVEHRHEV 364 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQA 414 V RR + L + KR HILEGLL+A ++DEVI++IR+ D P+ A LM +FGL++ QA Sbjct: 365 VVRRTKFELAEAKKRAHILEGLLIALDHLDEVIKLIRSSDTPEDARTGLMEKFGLSDIQA 424 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 AIL++ LR L LE KI+ E +EL K + LQ IL E K ++K EL + YGD Sbjct: 425 RAILDMTLRRLTGLERDKIKDEYNELMKTIEYLQSILDDESKRMQIIKDELTEMKEKYGD 484 Query: 475 DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV--------RSAKGHDIDAPGLNYK 526 +RR+ + A+ MS D + E V I +S G++ R+ + G + + Sbjct: 485 ERRTTIV--HSAEDMSMEDFIEDEEVVITISHEGYIKRTPATEYRTQGRGGKGSKGSDSR 542 Query: 527 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDH 584 D + + ++ ++F TGR + + +P +G + + +P + Sbjct: 543 NEDFIEHLLIASNHNYMLFFTETGRCFWLRVYEIPEGTRLSKGRAIQNIINIPKEEKIKA 602 Query: 585 MLMESD--DQKLLMASDAGYGFVCTFNDLVARNR---------AGKALITLPENAHVMPP 633 + + DQ+ L + Y +CT + + G I + E ++ Sbjct: 603 FIKVKNLKDQEYL---ENNYIIMCTKKGTIKKTSLEAYSRPRVNGINAININEGDQLLEA 659 Query: 634 VVIEDASDMLLAITQAGRMLMF 655 + +S++++A+ ++GR + F Sbjct: 660 SLTTGSSEIVMAL-RSGRAIRF 680 >UniRef50_P41513 DNA gyrase subunit A n=98 Tax=Bacteria RepID=GYRA_ERWCA Length = 878 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 270/752 (35%), Positives = 416/752 (55%), Gaps = 77/752 (10%) Query: 1 MSDMAERLA---LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 57 MSD+A + + E +++YL+Y+M VI+ RALP + DGLKPV RR++YAMS LG + + Sbjct: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWN 60 Query: 58 AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 117 +KKSAR VGDV+GKYHPHGDSA YE +V MAQPFS RY LVDGQGN+G+ D S AA Sbjct: 61 KPYKKSARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAA 119 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 MRYTE R+SK + LL++L + T D+VPN+DGT Q P ++P R+PN+L+NG++GIAVGMA Sbjct: 120 MRYTEIRMSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMA 179 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T+IPPHNL EV +A ID +L+ L++ ++GPD+PT A II R I + Y GRG Sbjct: 180 TNIPPHNLTEVVNGCLAYIDDENISLEGLMEHIKGPDFPT-AAIINGRRGIEEAYRTGRG 238 Query: 238 SVRMRAVWKKEDGA------VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDH 291 + +RA + E A +++ +P+QV+ AR++E+IA +++K++ + LRDESD Sbjct: 239 KIYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDK 298 Query: 292 ENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGL-DGRPAVKNLLEILSEW 350 + R+VI + + V + V+N+L++ T L+ S+ +NM+ L G+P + L +IL + Sbjct: 299 DG-MRIVIEIKRDAVG-EVVLNNLYSQTQLQTSF--GINMVALHQGQPKIMPLKDILVAF 354 Query: 351 LVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMS----- 405 + RR+ V RR + L K R HILEGL +A NID +IE+IR P A S Sbjct: 355 VRHRREVVTRRTIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQA 414 Query: 406 --------------------------------RFGLTETQAEAILELKLRHLAKLEEMKI 433 R+ LTE QA+AIL+L+L+ L +E K+ Sbjct: 415 WELGSVATMLERAGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKL 474 Query: 434 RGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHD 493 E EL E +L IL S ++ ++++EL+A Y D+RR+ + ++ D Sbjct: 475 LDEYKELLAEIAELLYILNSPERLMEVIREELEAFKTQYSDERRTEIT--ANTADINIED 532 Query: 494 MLPSEPVTIVLSQMGWVRSAKGHDIDA--------PGLNYKAGDSFKAAVKGKSNQPVVF 545 ++ E V + LS G+V+ D +A K D + ++ ++ Sbjct: 533 LINQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILC 592 Query: 546 VDSTGRSYAIDPITLPSA-RG-QGEPLTGKLTLPPGATVDHML---MESDDQKLLMASDA 600 S GR Y + LP A RG +G P+ L L + +L + + + MA+ + Sbjct: 593 FSSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGRHIFMATAS 652 Query: 601 GYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDL 660 G + +R+ +G + L E ++ V + D SD + + G+++ F + Sbjct: 653 GTVKKTALTEF-SRHVSGIIAVNLNEGDELI-GVDLTDGSDEAMLFSAEGKVVRFSEQAV 710 Query: 661 PQLSK-GKGNKIINIPSAEAARGEDGLAQLYV 691 + + G + IN+ +GED + L + Sbjct: 711 RSMGRTATGVRGINL------QGEDRVVSLII 736 >UniRef50_B8FW91 DNA gyrase, A subunit n=2 Tax=Desulfitobacterium hafniense RepID=B8FW91_DESHD Length = 808 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 233/562 (41%), Positives = 342/562 (60%), Gaps = 25/562 (4%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 +L E +YL YS +VI+ RA+P + DGLKPV RRI+YAM ELG+ + KSAR VG Sbjct: 12 SLEEVLPESYLGYSKHVILQRAVPDVRDGLKPVHRRIIYAMDELGMTPDKPYSKSARLVG 71 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 D +GKYHPHGDS+ Y+A V MAQP++ RYPL+DGQGN+G+ D + AAMRYTE R++ Sbjct: 72 DCMGKYHPHGDSSIYDAAVRMAQPWATRYPLIDGQGNFGSIDGDGA-AAMRYTEMRMTHL 130 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 S+L+ ++ + + PN+D +EP +LP+ PN+L+NG +GIAVGMA++IPPHNLREV Sbjct: 131 SQLMTQDIEKDVIPFKPNYDQREKEPIVLPSPFPNLLVNGGSGIAVGMASNIPPHNLREV 190 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248 A I ID P TL+QL++ V+GPD+PT II S+ + Y +GRG V MR E Sbjct: 191 VAALILQIDNPHVTLEQLMEKVKGPDFPTGGLIIGSQG-FTEAYRSGRGKVTMRGKAIIE 249 Query: 249 DGA-----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 G +VI+ +P QVS + + +I AQ N K+ + ++RDESD E RLV+ + Sbjct: 250 SGKNGKSLIVITEIPFQVSKSTLAAKIEAQSENGKIEGISEVRDESDREG-IRLVVECKK 308 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLN 363 + D +++ L+ T L++++ I +I +G P V L EI +L RR+ V RR Sbjct: 309 D-ADPKRILKLLYKYTQLQETFGIINLVISEEGTPRVLGLKEINHSYLQHRREVVLRRTE 367 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP---KPALMSRFGLTETQAEAILEL 420 Y L K R HILEGL++A N+DEV++IIR+ P K L++RF +E QA+AIL++ Sbjct: 368 YELAKAKARAHILEGLVIAINNLDEVLQIIRSSKTPALAKAGLITRFEFSEVQAQAILDM 427 Query: 421 KLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRS-- 478 KL+HL LE IR E +E+ K +L+ ILA K+ ++K EL+ A YGD+RR+ Sbjct: 428 KLQHLTNLELDGIRKEYAEILKLIAELESILADINKVYTIIKNELKQIADQYGDERRTLI 487 Query: 479 ---PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS----AKGHDIDAPGLNYKAGDSF 531 + + + A E P +P+ ++L++ G+++ + I+A +K GD Sbjct: 488 LPEDVGDEVDYSAFEE----PEKPMEVLLTRKGFIKQIPTPTRRSQINAIAFAFKDGDVL 543 Query: 532 KAAVKGKSNQPVVFVDSTGRSY 553 V S + F +G+ Y Sbjct: 544 LEHVSCTSKDTLYFFTHSGKYY 565 >UniRef50_C6HYH3 DNA gyrase, A subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYH3_9BACT Length = 854 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 266/686 (38%), Positives = 391/686 (56%), Gaps = 52/686 (7%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 +++ E AYLNYSM VI+ RALP DGLKPVQRR+++AM E+G+ ++KSAR V Sbjct: 15 VSIDEEIRTAYLNYSMSVIVGRALPDARDGLKPVQRRVLFAMHEMGVRPGTAYRKSARIV 74 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 GDV+GKYHPHGD+A Y+ V + QPF+ RYPL+DGQGN+G+ D + AAMRYTE RL++ Sbjct: 75 GDVIGKYHPHGDTAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDG-DAPAAMRYTEIRLTR 133 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 +E +++EL + T DW PN+D +L+EP++LPA LP +LLNG++GIAVGMAT+IPPHN+ E Sbjct: 134 LAEEMMAELDEETVDWSPNYDESLEEPRVLPASLPLLLLNGSSGIAVGMATNIPPHNITE 193 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 V A + L+D P+ T L+ V GPD+PT +I R+ I Y GRGS+ MR V + Sbjct: 194 VLNALLHLMDNPEATDSDLMTFVTGPDFPT-GGVILGRSGIESAYRTGRGSIVMRGVVEV 252 Query: 248 EDG------AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI-- 299 ED +VI +P+ V+ AR++E+IA +R KK+ + D+RDESD + R+V+ Sbjct: 253 EDSTRSDRQCLVIREIPYLVNKARLIEKIAELVREKKIEHIADIRDESDRDG-MRIVVEL 311 Query: 300 ----VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 +PR +MN LF T L+ S+ N I ++GRP +L + L +L FR+ Sbjct: 312 KREAIPRI-------IMNQLFLLTPLQSSFGYNAVSI-VNGRPETLSLSQTLRVFLGFRK 363 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTET 412 D V RR +RL K +R HILEGL A IDE+I +IR P+ A L+S F +E Sbjct: 364 DVVTRRTLFRLRKARERFHILEGLRRAIDLIDEIIALIRRSGSPEEARNGLVSTFAFSEL 423 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QA+AIL+L+L+ L LE KI E E+ L+ ILAS + ++++E + + + Sbjct: 424 QAQAILDLRLQRLTGLEREKIEAEYREVAALIASLEAILASREALLEVIRQETRVLLERF 483 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV------------RSAKGHDIDA 520 GD RR+ + E ++ ++P EP + LS G++ R KG Sbjct: 484 GDGRRTVIVPDE--GELTPEALIPDEPYIVTLSYEGYIKRMPDAVLPTQRRGGKGR---- 537 Query: 521 PGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPP 578 G+ K D A + +++ ++F G+ Y + LP A+ +G+ L L+L P Sbjct: 538 IGVTLKEDDCLIATLNARAHDTLLFFTDLGKVYRLKTYELPEAQRTARGKHLLSLLSLSP 597 Query: 579 GATVDHML----MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPV 634 V +L E D+ LL + GY F T A R G + T+ E + V Sbjct: 598 DERVAAILPVRSFEGDNL-LLFGTVKGY-FKKTRLSEYANIRQGGLIATVLEEGDRLARV 655 Query: 635 VIEDASDMLLAITQAGRMLMFPVSDL 660 ++ LL T+ G + F ++ Sbjct: 656 LVLHPDRRLLVATRGGMSIRFEADNI 681 >UniRef50_D1AVF2 DNA gyrase, A subunit n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AVF2_STRM9 Length = 870 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 257/726 (35%), Positives = 410/726 (56%), Gaps = 49/726 (6%) Query: 17 AYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHP 76 +YL+YSM VI+ RALP + DGLKPV RRI+YAM EL +N ++ +KKSAR VG+VLGKYHP Sbjct: 52 SYLDYSMSVIVSRALPDVRDGLKPVHRRILYAMDELKMNHNSPYKKSARLVGEVLGKYHP 111 Query: 77 HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSEL 136 HGDSA Y +MV MAQ F+ RY LVDG GN+G+ D S AAMRYTE+R+SK +E +L ++ Sbjct: 112 HGDSAVYNSMVRMAQDFNTRYMLVDGHGNFGSID-GDSAAAMRYTEARMSKIAEEMLIDI 170 Query: 137 GQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALI 196 + T DW NFD +L EP +LPARLPN+LLNGTTGIAVGMAT+IPPHNL E++ IALI Sbjct: 171 NKDTIDWRKNFDESLDEPTVLPARLPNLLLNGTTGIAVGMATNIPPHNLGELSDGIIALI 230 Query: 197 DQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA-----VWKKEDGA 251 D ++D+L+ ++GPD+PT II ++ I Y+ GRG VR+ A KK + Sbjct: 231 DNRDISIDELITHIKGPDFPT-GGIIYGKSGIYSAYKTGRGKVRVSAKTEIITDKKGRQS 289 Query: 252 VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQV 311 +VI+ LP+QV+ A ++++I +++K + + DL D S+ E ++ + + ++ V Sbjct: 290 IVITELPYQVNKANLIKRIGELVKDKIIVGISDLADLSNLEGIRIVIDIKKGEEAEI--V 347 Query: 312 MNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLK 371 +N L TDL+ ++ I + + ++ P + NL EIL ++L R D + R+ + L K Sbjct: 348 LNKLLKFTDLQTTFGI-IMLALVNNAPKILNLKEILEKYLEHRYDVITRKTIFDLNKAKD 406 Query: 372 RLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAEAILELKLRHLAKL 428 R HILEGL A +IDE+I IIR K +L+++F TE Q +AIL+++L L L Sbjct: 407 RAHILEGLRKALDHIDEIISIIRGSKTRALAKESLIAKFEFTEIQTDAILDMRLHRLTGL 466 Query: 429 EEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQ-EREEAK 487 +I E +L L+ ILA + + ++K+E+ Q YGD RR+ ++ +R E Sbjct: 467 AREEIDTEYDKLMLFITDLEDILAKDERKYAIIKEEVLELKQKYGDARRTSIENDRYE-- 524 Query: 488 AMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAG-----------DSFKAAVK 536 ++ D++ +E V + +++ G+ AK +D+ + G D K Sbjct: 525 -INIEDLIKNEDVIVTITKRGY---AKRMSLDSYKAQKRGGKGVSNTTTIEDDVLKDLFT 580 Query: 537 GKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHML----MESD 590 K+ ++ G+ Y+I +P S + +G+ + + L + ++ +E+D Sbjct: 581 AKTLDTLMVFSDKGKVYSIKVYEIPEVSKQARGKLIGNIIELDENEKISVIIPVDEIEND 640 Query: 591 DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDAS--DMLLAITQ 648 ++ L+ + G ++ NR GK I+ ++ + V I S D + T+ Sbjct: 641 NRDLIFITRNGIAKKTKISEFKTINRNGKIAISFKDDEDEVKFVGITSGSEKDEIFISTK 700 Query: 649 AGRMLMFPVSDLPQLSKG-------KGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 G + F D+ + + K N + SA+ ++ + ++ VL S ++ Sbjct: 701 GGMAVRFKEEDIRSMGRTAAGVRAIKLNSNDEVVSADVIYTDNNVDEMSVL---SVTSLG 757 Query: 702 VGKRKI 707 +GK+ + Sbjct: 758 IGKKTL 763 >UniRef50_B5RLZ1 DNA gyrase, subunit A n=5 Tax=Borrelia RepID=B5RLZ1_BORDL Length = 815 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 260/745 (34%), Positives = 420/745 (56%), Gaps = 63/745 (8%) Query: 17 AYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHP 76 +YLNY+M VI+ RALP + DGLKPV RRI+Y+M E+GL + FKK+ R VGDVLGKYHP Sbjct: 27 SYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSDKSFKKAGRIVGDVLGKYHP 86 Query: 77 HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSE 135 HGD + YEA+V +AQ FS RYP+V GQGN+G+ D DP AAMRYTE+R++K +E L+ + Sbjct: 87 HGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPP--AAMRYTEARMAKIAEELVID 144 Query: 136 LGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIAL 195 + + T ++ PN+D +L EP++LPA P +L+NG++GIAVGMAT++ PHNLREV A I + Sbjct: 145 IDKQTVNFKPNYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATNMAPHNLREVCDAIIYM 204 Query: 196 IDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW----KKEDG- 250 ++ ++ L+ I++GPD+PT AEII + I K Y G+GSV +RA + K ED Sbjct: 205 LEHDDVSIYDLIAIIKGPDFPTYAEIIYNENLI-KAYTTGKGSVVIRARYHIEEKSEDNI 263 Query: 251 AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQ 310 +++I+ +P+ V+ + +L +IA ++ +KL V D+RDESD E R+V+ + D Sbjct: 264 SIIITQIPYAVNKSSLLMKIALLIKEEKLEGVSDIRDESDREG-IRIVLEIKKG-FDPHV 321 Query: 311 VMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVL 370 VMN L+ T+L +++ IN N+ ++G P NL E++SE++ R++ +RRR+ + L++ Sbjct: 322 VMNLLYEYTELRRNFSIN-NLALVNGIPKQLNLRELISEFIEHRKNILRRRVEFDLKRAQ 380 Query: 371 KRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQAEAILELKLRHLAK 427 ++ HILEGL +A NID VIEIIR + + +M F L+E QA +IL++KL+ L Sbjct: 381 EKAHILEGLNIALRNIDRVIEIIRFSRLVKDARECIMREFQLSEIQANSILDMKLQKLTS 440 Query: 428 LEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAK 487 LE KI + + + IL S ++ N++++E+ + +GDDRR+ + EE Sbjct: 441 LEVAKIEEDFQVVLALIKDYEDILISPSRIVNMIREEIINLSLKFGDDRRTKIIYDEEVL 500 Query: 488 AMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSF--------KAAVKGKS 539 S D++ E V ++L++ G+++ + G+ K SF A+ + Sbjct: 501 KTSMSDLMQRENVIVILTKQGFIKRVLQDEYKLQGIGGKGLGSFDLQDSDQVNVALCVNT 560 Query: 540 NQPVVFVDSTGRSYAIDPITLP----SARGQG----------EPLTGKLTLPPGATVDHM 585 + ++ + + G+ Y I+ + ++RGQ E + + +++ Sbjct: 561 HDFLLMISNEGKLYVINAYGIKDSSRTSRGQNIRELINLGEKEEILAIKNCSELSVDNYL 620 Query: 586 LMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLA 645 L+ + + K+ G+ V ++R G ++ L + V ++ D ++ Sbjct: 621 LITTANGKIARIETEGFKTV--------KSR-GVIIMKLDDKDFVTSAEIVS-RDDKIIC 670 Query: 646 ITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH---- 701 I++ G F +D+ +G S R D L + + S L I Sbjct: 671 ISKKGNAFAFSSNDIRLTHRGTQG-----VSGMKVREGDMLIKALAIKQGSHLLIMSENG 725 Query: 702 VGKRKIKLRPEELQKVTG-ERGRRG 725 GKR E+ KVTG +RG G Sbjct: 726 YGKRL------EVSKVTGLKRGSTG 744 >UniRef50_Q55738 DNA gyrase subunit A n=43 Tax=cellular organisms RepID=GYRA_SYNY3 Length = 860 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 269/743 (36%), Positives = 412/743 (55%), Gaps = 62/743 (8%) Query: 1 MSDMAERLA---LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 57 M+D +RL L +YL Y+M VI+ RALP DGLKPV RRI+YAM ELGL Sbjct: 1 MTDSPDRLIATDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPD 60 Query: 58 AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFA 116 F+K AR VG+VLGKYHPHGD+A Y+A+V MAQ FS R PL+DG GN+G+ D DP A Sbjct: 61 RPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMREPLIDGHGNFGSVDNDPP--A 118 Query: 117 AMRYTESRLSKYS-ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVG 175 AMRYTESRL S LL ++ T D++ NFDG+ QEP +LPAR+P +L+NG++GIAVG Sbjct: 119 AMRYTESRLRPLSTNSLLRDIEAETVDFIDNFDGSQQEPTVLPARIPQLLINGSSGIAVG 178 Query: 176 MATDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENG 235 MAT+IPPHNL EV AIALI P+ T +L+ I+ GPD+PT A+I+ R+ IR+ Y G Sbjct: 179 MATNIPPHNLGEVIDGAIALIRNPEITEQELMQIIPGPDFPTGAQIL-GRSGIREAYLTG 237 Query: 236 RGSVRMRAVWKKED---------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLR 286 RGS+ MR V E A++++ LP+Q + A ++E+IA + +KK+ + D+R Sbjct: 238 RGSITMRGVASIETMEHPGRPDRDAIIVTELPYQTNKAALIERIADLVNDKKIDGIADIR 297 Query: 287 DESDHENPTRLVIVPRSN---RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNL 343 DESD + R+VI + + RV V+N+L+ T ++ ++ NL + ++G P V + Sbjct: 298 DESDRDG-MRIVIELKRDAYARV----VLNNLYKQTPIQSNFGANLLAL-VNGTPEVLTI 351 Query: 344 LEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPK 400 + L+ + FR +T+ RR Y L K +R H+L+GLL+A N+D VI +IR + K Sbjct: 352 KKFLTVFWEFRIETITRRTRYELRKAEERDHLLQGLLIALDNLDAVIRLIRGAADTASAK 411 Query: 401 PALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNL 460 L+ F L+E QA+AIL+++LR L LE KI E EL+ + Q ILA ++N + Sbjct: 412 TELVEGFSLSEVQADAILQMQLRRLTALEADKITAEHDELQTKIADFQDILARRERVNAI 471 Query: 461 LKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV---------- 510 +++EL+ + RR+ + +E + + D++ ++ I+L++ G++ Sbjct: 472 IEEELEQIKAIHATPRRTVIV--QEDGELIDTDLIANDQALILLTEQGYIKRMPASTFGT 529 Query: 511 --RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQ 566 R+ +G K D + + + V+F G Y+++ +P S + Sbjct: 530 QNRATRGK----AAAKIKDDDGVEHFLSCCDHDKVLFFSDRGVVYSLNAYQIPIASRTAR 585 Query: 567 GEPLTGKLTLPPGATVDHMLMES---DDQKLLMASDAGY---GFVCTFNDLVARNRAGKA 620 G P+ L +P + ++ S DD +M + GY + F+++ A G Sbjct: 586 GVPIVQMLPIPKDEKITSLVSVSEFDDDTYFIMLTKQGYIKKTALSAFSNIRAN---GLI 642 Query: 621 LITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAA 680 I+L E + V + A D ++ +Q G + F + G+ + + + Sbjct: 643 AISLVEGDQ-LRWVRLAKAEDSVIIGSQKGMAIHFKADQDELRALGRATRGVK---SMRL 698 Query: 681 RGEDGLAQLYVLPPQSTLTIHVG 703 R D L + +LP Q I VG Sbjct: 699 RSGDALISMDILPSQVVANIAVG 721 >UniRef50_C7H1V9 DNA gyrase, A subunit n=3 Tax=Clostridiales RepID=C7H1V9_9FIRM Length = 854 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 254/699 (36%), Positives = 394/699 (56%), Gaps = 45/699 (6%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 E A+L+YSM VI+ RALP + DGLKPV RRI+Y M E G + S ++KSA TVG VLG Y Sbjct: 25 ETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHAYRKSADTVGAVLGSY 84 Query: 75 HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133 HPHGD++ Y+AMV +AQ FS RYPLVDGQGN+G+ D DP AA RYTE+R+S+ + +L Sbjct: 85 HPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPP--AAYRYTEARMSRMAVEML 142 Query: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193 +++ + T DW PNFD T +EP +LP R PN+L+NG+ GIAVGMAT+IPPHNL EV + Sbjct: 143 TDIDKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVIDGCV 202 Query: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA---VWKKEDG 250 A I+ P L L++ ++GPD+PT A II R+ IR Y GRG + +R + +K++G Sbjct: 203 AYIEDPDIDLPGLMEHIKGPDFPT-AGIIMGRSGIRAAYATGRGKITLRGRATIEEKKNG 261 Query: 251 --AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308 ++++ +P+ V+ AR++E IA ++ K++ + DL DE++ + R+VI R + + Sbjct: 262 RAQIIVTEIPYMVNKARLIENIADLVKEKRIEGISDLNDETNRKG-MRIVIDVRKD-ANP 319 Query: 309 DQVMNHLFATTDLEKSYRINLNMIGLDGR-PAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367 V+N L+ T L+ + + + M+ +D + P V L +++ +++ F+ + VRRR Y L+ Sbjct: 320 QVVLNQLYQYTQLQDT--VGVIMLAIDHKVPKVMTLKQMIQKYVEFQDEVVRRRTQYDLK 377 Query: 368 KVLKRLHILEGLLVAFLNIDEVIEIIR----NEDEPKPALMSRFGLTETQAEAILELKLR 423 K +R HILEGL A +DE+I IR E K A+M +FG + QA+AI++L+L Sbjct: 378 KARERAHILEGLKKATDIVDELIATIRACKGGMSEAKAAIMEQFGFDDPQADAIVKLQLG 437 Query: 424 HLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQER 483 LA LE +KI E L + + ILA + ++ ++K EL + +GDDRR+ ++ Sbjct: 438 RLAGLEILKIEEELGSLNAKIRDWEEILADDARVLEIVKSELLEMKRRFGDDRRTEIE-- 495 Query: 484 EEAKAMSEHDMLPSEPVTIVLSQMGWVR--------SAKGHDIDAPGLNYKAGDSFKAAV 535 + D++ E L++ G+++ + K G+ K D + Sbjct: 496 TVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQKRGGRGISGMTRKEEDIVQEMF 555 Query: 536 KGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHMLMESDDQK 593 G ++ V+FV GR + I T+ S +G + L L G V +ML +S D Sbjct: 556 VGSTHDYVLFVTDKGRLFRIKGYTIAEGSRTSKGTNIVNLLQLAEGEKVTNMLCQSKD-- 613 Query: 594 LLMASDAGYGFVCTFNDLVARN---------RAGKALITLPENAHVMPPVVIEDASDMLL 644 A++ G+ + T L+ R ++G I L E + + DML+ Sbjct: 614 --TANEGGFVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNE-GDALAWTRLTSGHDMLI 670 Query: 645 AITQAGRMLMFPVSDL-PQLSKGKGNKIINIPSAEAARG 682 T+ G+ + F D P G G + I + + G Sbjct: 671 VATRNGQAIRFNEEDARPMGRSGHGVRAIKLAEGDEVVG 709 >UniRef50_Q1IH79 DNA gyrase subunit A n=5 Tax=Bacteria RepID=Q1IH79_ACIBL Length = 865 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 239/652 (36%), Positives = 386/652 (59%), Gaps = 53/652 (8%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 + + E + +YL+YSM VI+ RALP + DGLKPV RRI+YAM ++GL + K K A+ V Sbjct: 26 INIEEEMKRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMHDMGLLHNRKHVKCAKVV 85 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLS 126 G+VLGKYHPHGDSA Y+AMV MAQ FS RYPLVDGQGN+G+ D DP AA RYTE+R++ Sbjct: 86 GEVLGKYHPHGDSAVYDAMVRMAQDFSLRYPLVDGQGNFGSVDGDPP--AAYRYTEARMT 143 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 +E LL+++ + T D+V NFD T EP +LP ++PN+L+NG+ GIAVGMAT+IPPHNL Sbjct: 144 AIAEELLADIDKDTVDFVANFDDTSAEPLLLPTKVPNLLINGSNGIAVGMATNIPPHNLT 203 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 E+ A I +++ PK+TLD +L VQGPD+PT I + I+ Y+NGRG MRA Sbjct: 204 EIVDACITIVNNPKSTLDDVLKFVQGPDFPT-GGFIHGKGGIKNAYQNGRGRFMMRAKVA 262 Query: 247 KE----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 E A+V++ +P+QV+ + ++++IA + +K + + D+RDESD + ++ + R Sbjct: 263 VEHLPNKDAIVVTEIPYQVNKSTLIKKIADLVNDKTIDEISDVRDESDRDGMRIVIELKR 322 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRL 362 S + ++ V+N L+ T +++S+ + + + ++ +P L++ L+ ++ R D VRRR Sbjct: 323 SAQPEI--VLNQLYKHTQMQESFSM-IFLAVVNNQPKEMGLVQALNHFIDHRIDVVRRRT 379 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFG----------- 408 Y L+K R HILEG L+A ++D VI IIR N + + L++ F Sbjct: 380 FYLLQKAKDREHILEGYLMALDHLDNVIAIIRGSSNRADARENLVAYFTGKKITINTTGK 439 Query: 409 ---------LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNN 459 + QA+AILEL+L L +L +I E ++ + + + ILASE+K+ + Sbjct: 440 APKVDPEKPFSTRQADAILELQLHRLTRLSIDEITSELKDVRERIAEYESILASEKKLRS 499 Query: 460 LLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV--------R 511 ++ KEL+ + YGD+RR+ +Q +EA +S D++ E V + +S G++ R Sbjct: 500 VIVKELEQIRKDYGDERRTIIQ--DEAAELSLEDLIADEQVAVTVSHSGYLKRTPISTYR 557 Query: 512 SAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEP 569 + G++ + D + ++ ++ +TGR Y + +P +A G+G+ Sbjct: 558 QQRRGGTGRKGMSTRDEDFVEMMFVASTHAYLLIFTNTGRVYWLKVYEVPEIAAAGKGKH 617 Query: 570 LTGKLTLPPGATVDHML----MESDDQKLLMASDAGY---GFVCTFNDLVAR 614 + + L PG +V +L +E + + + + G + F++++AR Sbjct: 618 IGNLVALQPGESVRAILPVKSLEEESRYVFFTTRKGTVKKTALVDFSNVMAR 669 >UniRef50_P48372 DNA gyrase subunit A n=78 Tax=Bacteria RepID=GYRA_PSEAE Length = 923 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 246/628 (39%), Positives = 364/628 (57%), Gaps = 65/628 (10%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 + +YL+Y+M VI+ RALP DGLKPV RR++YAMSELG + + +KKSAR VGDV+GKY Sbjct: 18 KQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPYKKSARVVGDVIGKY 77 Query: 75 HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLS 134 HPHGD+A Y+ +V MAQPFS RY LVDGQGN+G+ D + AAMRYTE R++K + LL+ Sbjct: 78 HPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNA-AAMRYTEVRMAKLAHELLA 136 Query: 135 ELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIA 194 +L + T DWVPN+DGT Q P ++P ++PN+L+NG++GIAVGMAT+IPPHNL EV +A Sbjct: 137 DLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNIPPHNLGEVIDGCLA 196 Query: 195 LIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA---VWKKEDGA 251 L+D P T+D+L+ + GPD+PT A II RA I + Y GRG + +RA V + E G Sbjct: 197 LMDNPDLTVDELMQYIPGPDFPT-AGIINGRAGIIEAYRTGRGRIYIRARAVVEEMEKGG 255 Query: 252 ----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVD 307 ++I+ LP+Q++ AR++E+IA ++ KK+ + +LRDESD + R+VI R V Sbjct: 256 GREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDG-MRVVIELRRGEVG 314 Query: 308 MDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367 + V+N+L+A T L+ + IN+ + +DG+P NL ++L ++ RR+ V RR Y L Sbjct: 315 -EVVLNNLYAQTQLQSVFGINVVAL-VDGQPRTLNLKDMLEVFVRHRREVVTRRTVYELR 372 Query: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK----------------PALMSRFG--- 408 K +R HILEG VA NID VIE+I++ P A++ R G Sbjct: 373 KARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSAVEAMVERAGADA 432 Query: 409 ------------------LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450 L+ QA+AILEL+L L LE K+ E E+ +L I Sbjct: 433 CRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSEYQEILNLIGELIRI 492 Query: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510 L + ++ ++++EL+A +GD RR+ + + ++ D++ E + +S G+ Sbjct: 493 LTNPARLMEVIREELEAVKAEFGDARRTEIVASQVDLTIA--DLITEEDRVVTISHGGYA 550 Query: 511 RSA----------KGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITL 560 +S G A G+ K D + + S+ ++ S G+ Y + + Sbjct: 551 KSQPLAAYQAQRRGGKGKSATGM--KDEDYIEHLLVANSHATLLLFSSKGKVYWLRTFEI 608 Query: 561 PSAR--GQGEPLTGKLTLPPGATVDHML 586 P A +G PL L L G + ML Sbjct: 609 PEASRTARGRPLVNLLPLDEGERITAML 636 >UniRef50_A6CC19 Type II DNA topoisomerase, A subunit n=3 Tax=Planctomycetaceae RepID=A6CC19_9PLAN Length = 802 Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust. Identities = 253/718 (35%), Positives = 402/718 (55%), Gaps = 40/718 (5%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM-SELGLNASAKF 60 SD E + + + T YLNY+M VI RALP + DGLKPVQRRI+Y M +L L A+AK Sbjct: 21 SDRIEYVPISDVTRRRYLNYAMSVITSRALPDVRDGLKPVQRRILYVMYHDLRLMANAKP 80 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 +K A+ GD G YHPHGD++ Y+A+V +AQ F+ R PL++GQGN+G+ + AA RY Sbjct: 81 RKCAKICGDTTGNYHPHGDASVYDALVRLAQDFNLRSPLINGQGNFGSIMGLPA-AAARY 139 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RL+ +E L++EL T + PN+DGT EP +LPAR PN+L+NG GIAVGMAT+I Sbjct: 140 TEARLTGIAEHLMNELRYQTVEMRPNYDGTRDEPVVLPARFPNLLVNGVHGIAVGMATNI 199 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL EV +A + LI T+ QL+ ++GPD+P I+T + + +Y+ GRG V+ Sbjct: 200 PPHNLGEVIKACVHLIHHDDATVAQLMKHIKGPDFPMGGRIVTDKRSLTAVYKEGRGPVK 259 Query: 241 MRAVWKKEDGA-------VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHEN 293 +R WK E G +V+ ++P+ V +L +I + ++KLP + D+ DE+D +N Sbjct: 260 VRGEWKPEPGTRTKGVQRLVVYSVPYGVETGSLLSEIGGIVESRKLPQLVDVADETDDKN 319 Query: 294 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR----PAVKNLLEILSE 349 ++V+ + + D + VM L+ T+LE+++ +N+ + D P +L E+L Sbjct: 320 GLKIVLEIKPD-ADPETVMAFLYKHTNLEQNFSVNMTCLVPDESEVLVPRRCDLKEMLQY 378 Query: 350 WLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR 406 +L FR +VR+R Y+L+ + +R+HIL+G + F ++D+ +++IR + A LM+ Sbjct: 379 FLDFRFISVRKRFEYQLQLLERRIHILKGFAIIFNDLDKALKLIRASSGKQDAAKKLMAN 438 Query: 407 FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ 466 F L E Q AILEL+L ++KLE IR E +E E E ++++ ILAS++++ +++ EL+ Sbjct: 439 FPLDEIQTMAILELQLYRISKLEINTIREELAEKEAEAEKIRKILASDKRLWKVVENELK 498 Query: 467 ADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVR-----SAKGHDIDAP 521 A + + R++ L EE + E +V+S+ GW++ K + Sbjct: 499 ELADEFPEKRQTKLGSSEEITEFDPQAYIVRENTNVVVSREGWIKRVGRLKTKEGTQELA 558 Query: 522 GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGA- 580 + GDS A G + VVF S G +Y + +P + G GEPL+ + GA Sbjct: 559 KTRTREGDSVLAVAPGSTLDHVVFFSSDGVAYTLPIEQVPVSSGYGEPLSKHARMSDGAV 618 Query: 581 -----TVDHMLMESDDQ---------KLLMASDAGYGFVCTFNDL-VARNRAGKALITLP 625 T D D +L+ ++ G +F+ A +AG+ L Sbjct: 619 LVAAVTTDSRFTPEDKATKKQPLPTPHVLIVTEKGQFMRISFSLFRTASTKAGRKYCRLG 678 Query: 626 ENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARG 682 ++ V+ ++E+A M +A TQ R+L + + LS GKG K I + + G Sbjct: 679 KDDRVVYAGLVEEAETMFIA-TQDARVLHCEIEEAALLSNAGKGVKGIRLEKGDQVIG 735 >UniRef50_Q2IHQ4 DNA gyrase subunit A n=15 Tax=cellular organisms RepID=Q2IHQ4_ANADE Length = 907 Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust. Identities = 238/592 (40%), Positives = 366/592 (61%), Gaps = 30/592 (5%) Query: 16 NAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYH 75 +YL+YSM VI+ RALP + DGLKPV RR++YAM GL+ + ++ K A VG+VL KYH Sbjct: 36 KSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHYNKRYSKCAGVVGEVLKKYH 95 Query: 76 PHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLS 134 PHGD++ Y+A+V +AQ ++ RYPL+DGQGN+G+ D DP AA RYTE RL + S+ LL+ Sbjct: 96 PHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDPA--AAYRYTECRLERLSDHLLA 153 Query: 135 ELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIA 194 ++ + T DW PNFD ++ EP++LP R PN+L+NG+ GIAVGMAT+IPPHN+ EV AA+ Sbjct: 154 DIDKDTVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMGEVIDAAVH 213 Query: 195 LIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW------KKE 248 LI+ PK T+ L+ + GPD+PT A II R IR YE GRG++++RA K E Sbjct: 214 LIENPKATVLDLMRFIPGPDFPT-AGIIRGRDGIRAAYEKGRGTIQVRARTVVEIHPKTE 272 Query: 249 DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308 +V++ +P+QV+ A+++E IA +R K++ + DLRDES E R+VI + + + Sbjct: 273 RETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREG-MRIVIELKRDAL-A 330 Query: 309 DQVMNHLFATTDLEKSYRINLNMIGLD-GRPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367 V+N+L+A T ++ + + M+ +D G+P V L E+L ++ RRD V RR Y L Sbjct: 331 QVVLNNLYAHTQMQMGF--GVIMLAIDGGQPRVLTLKEMLERFVAHRRDVVTRRTRYELR 388 Query: 368 KVLKRLHILEGLLVAFLNIDEVIEII---RNEDEPKPALMSRFGLTETQAEAILELKLRH 424 K +R HIL G +A +IDE+IE+I ++ D + +M+RF L+E QA+AILE++L+ Sbjct: 389 KAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMARFALSELQAKAILEMQLQR 448 Query: 425 LAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQERE 484 L LE KI E +E++K +L+ ILASE+ + L+ EL+ Q + D+RR+ +Q Sbjct: 449 LTGLERQKILDELAEVQKLITRLKEILASEKVLMELIVGELREVKQLFADERRTEIQ--G 506 Query: 485 EAKAMSEHDMLPSEPVTIVLSQMGWV--------RSAKGHDIDAPGLNYKAGDSFKAAVK 536 EA +S D++ E + + +S +G+V R+ K G + D ++ Sbjct: 507 EATDLSTEDLIAEEEMVVTVSHLGYVKRNPVSLYRAQKRGGRGKTGAATRDEDFLESLFV 566 Query: 537 GKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHML 586 ++ ++ G+ Y + +P A +G+P+ + L PG V +L Sbjct: 567 ASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGKPIVNLVQLAPGEKVAAIL 618 >UniRef50_C1EGN9 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EGN9_9CHLO Length = 963 Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust. Identities = 245/615 (39%), Positives = 357/615 (58%), Gaps = 47/615 (7%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 L LH +YL+Y+M VI+ RALP + DGLKPV RRI+YAM ELGL++ FKK AR V Sbjct: 112 LELHLEASQSYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDSKKPFKKCARVV 171 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLS 126 G+VLGK+HPHGD + Y+A+V MAQ FS LVDG GN+G+ D DP AAMRYTE RL Sbjct: 172 GEVLGKFHPHGDQSVYDALVRMAQDFSMSSALVDGHGNFGSLDADPP--AAMRYTECRLK 229 Query: 127 KYSE-LLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 +E +LL+++G D+ FDG+ EP +LPARLPN+L+NG+TGIAVGMAT IPPHNL Sbjct: 230 PAAEAMLLADIGLDAVDFTETFDGSQTEPAVLPARLPNLLINGSTGIAVGMATSIPPHNL 289 Query: 186 REVAQAAIALIDQP-KTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR-- 242 REVA A + P + TL+ LL+++ PD+PT I+ R +++Y G+G V +R Sbjct: 290 REVANALVRFASDPERCTLEDLLEVMPAPDFPTGGIIVQQRGGFKEMYRTGKGGVNLRGA 349 Query: 243 AVWKKEDG---------AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHEN 293 A +K G AVVI+++P+Q + A + EQIA + ++ + V D+RDESD + Sbjct: 350 ATVEKVSGGGRNGQARDAVVITSIPYQTNKASLCEQIADLVNSRTIEGVSDVRDESDRDG 409 Query: 294 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR-PAVKNLLEILSEWLV 352 +V + R D + V++ L+A T L+ R+++N++GL GR P V +L+EI+ E+L Sbjct: 410 MRVVVEIRRG--ADANFVLDQLYARTKLQT--RVSVNLVGLVGREPKVLSLMEIMREFLA 465 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR-NEDEP--KPALMSR-FG 408 FR D V RR + L+K RLH++EG L D V+ IR +D P + AL + F Sbjct: 466 FRCDAVERRARHELQKASGRLHVVEGYLAVQAAPDAVVAAIRAAKDGPTAQAALQEKPFW 525 Query: 409 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 L+E QAEA+L + LR L LE K++ E++EL + L G+L ++ + +E + Sbjct: 526 LSEKQAEAVLAMPLRRLTGLEHDKLKTEEAELTARVEDLTGLLGDRSRVIATVAREAKEL 585 Query: 469 AQAYGDDRRSPLQEREE--AKAMS-EHDMLPSEPVTIVLSQMGWV------------RSA 513 +G DRR+ + + AK M+ DML S P ++++ G++ R+ Sbjct: 586 RDTFGVDRRTDIDTDAQIHAKKMNVTLDMLNS-PSLVIMTNRGYIKRIDPAVFSKQNRAT 644 Query: 514 KGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLT 571 +G ++ + GD V+F GR +A+ +P A G P T Sbjct: 645 RGRNMG----KMRGGDEVTKVTHCNGLDTVLFFTDRGRVHAVRAFNIPQASTSALGTPFT 700 Query: 572 GKLTLPPGATVDHML 586 L L G ++ ML Sbjct: 701 RVLKLAEGESITAML 715 >UniRef50_Q2S2H4 Type II DNA topoisomerase, A subunit n=2 Tax=Rhodothermaceae RepID=Q2S2H4_SALRD Length = 777 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 237/591 (40%), Positives = 343/591 (58%), Gaps = 18/591 (3%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSE-LGLNASAKFKK 62 + E + LHE YLNY++ VI RALP I DGLKPVQRRI++AM + L L S + +K Sbjct: 3 VTETIPLHETARERYLNYALSVITSRALPDIRDGLKPVQRRILFAMFDSLNLYPSKRHRK 62 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SA VG+ +GKYHPHGD A Y+AMV MAQ FS R PLVDG GN+G+ D S AAMRYTE Sbjct: 63 SATVVGETMGKYHPHGDKAIYDAMVRMAQSFSLRAPLVDGHGNFGSLDG-DSAAAMRYTE 121 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 ++L + +L L T D+ NFDG+L+EP +LPAR+PN+L+NG +GIAVGMAT+IPP Sbjct: 122 AKLQPLAMEMLEGLRDETVDYRDNFDGSLEEPVVLPARVPNLLVNGASGIAVGMATNIPP 181 Query: 183 HNLREVAQAAIALIDQPKTTLDQLL-DIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 HNL EV AA+ +I++P+ L+ D +QGPD+PT I+ ++ E+ +IYE G G++ M Sbjct: 182 HNLGEVVDAALHMIEEPEVDTSTLVRDHIQGPDFPTGGRILNTQDELAEIYETGSGTIEM 241 Query: 242 RAVWK-KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 R ++ K +I ++P+ V ++++E+IA + + +P + ++RDES + R+V+ Sbjct: 242 RGAYRTKGKTRAIIESVPYGVDKSKIVEEIADHIAEENVPQLSNVRDES--TDDVRIVLE 299 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK-----NLLEILSEWLVFRR 355 + D + M +LF T L+K + +NL + VK +L IL +L FR Sbjct: 300 LKRGS-DTEAAMAYLFKHTKLQKRFHVNLTCLVPTESTDVKAPKQVDLRTILRYFLDFRL 358 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTET 412 D V RRL L ++ R+HILEG F +DE IEIIR N+ + LM RF L E Sbjct: 359 DVVTRRLQNELAELEARIHILEGFETIFDALDEAIEIIRASKNKADAAQRLMHRFQLDEE 418 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 Q +AILE +L L+++E IR E E + ++ +L E ++K ELQ Y Sbjct: 419 QTDAILETQLYKLSQMEIEAIRDELGEKRARAEGIRRLLDDEDARWGIVKDELQDIRDEY 478 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-RSAKGHDIDAPGLNYKAGDSF 531 D+RRS L +E D + E V +++++ GWV R D+DA + + GD Sbjct: 479 TDERRSTLVGPGADMEYTEEDYIVDEDVHVIVTRDGWVKRQGTYSDLDA--IRTRDGDEV 536 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATV 582 A+ G + V F + G Y +PS G G+P+ + G V Sbjct: 537 GWALAGSTRATVGFFTNYGTCYTTRITEIPSTTGYGDPVQKLFSFDDGEHV 587 >UniRef50_C9M5P0 DNA gyrase, A subunit n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M5P0_9BACT Length = 836 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 247/666 (37%), Positives = 381/666 (57%), Gaps = 28/666 (4%) Query: 7 RLALHEFTE---NAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 R+ +H E ++YL+Y+M VI+ RALP DGLKPVQRRI+YAM LG+ + +KKS Sbjct: 10 RVTVHPLVEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRILYAMMGLGIKHNQPYKKS 69 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VG+ +GKYHPHGDSA YE MV +AQ +S RYPLVDGQGN+G+ D S AAMRYTE+ Sbjct: 70 ARVVGETMGKYHPHGDSAIYETMVRLAQEWSMRYPLVDGQGNFGSIDG-DSAAAMRYTEA 128 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 R ++ EL+L+++ + T DW PNFD +L+EP LP+ LPN+L+NG+TGIAVGMAT++ PH Sbjct: 129 RFAETGELMLADIDEDTVDWGPNFDESLKEPLTLPSALPNLLINGSTGIAVGMATNMAPH 188 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL EV A LI +P LD L+ + GPD+PT II R I Y GRG + +R Sbjct: 189 NLGEVVDALRLLIRRPDAELDDLMSCLPGPDFPT-GGIIMGREGILDAYRTGRGKIILRG 247 Query: 244 VWKKEDGA-----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 E + VVI+ +P+ ++ ++E I ++ K++ V D+RDESD + RLV Sbjct: 248 KCHVEQKSRSKTNVVITEIPYMINKTTLIESIVKGVQGKQIDGVSDIRDESDRKG-LRLV 306 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 V + D + V L++ T L+ ++ I +N+ +D +P NL ++L +L +RR V Sbjct: 307 -VELTREADAELVQRQLYSRTSLQSTFGI-INLALVDNKPVELNLKQLLETFLNYRRSVV 364 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAE 415 RRR +RL+K R HI+EGL A ID+VI IIR D+ K L+ T+ QA+ Sbjct: 365 RRRTQFRLDKAEARRHIVEGLCKALDVIDQVIAIIRGAQTADDAKAGLIGELAFTDLQAQ 424 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 AIL+++L+ L LE K+ E ++L + ++ + IL + ++ ++ EL + + D+ Sbjct: 425 AILDMRLQRLTGLEREKLLAELAQLLADIERYRSILDNPSVLDGVINDELGELRRKFADE 484 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSA--KGHDIDAPGLNYKAG----- 528 RR+ L + S D+LP E + + LS+ G++R + + +++ G + G Sbjct: 485 RRTELSAALPTEGDSLEDLLPEEDILVTLSKDGFLRRSPLENYNLQNRGGKGRLGAVLKD 544 Query: 529 -DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR-GQGEPLTGKLTLPPGATVDHM- 585 D ++ + S GR +AI +P + G+G ++ ++L V M Sbjct: 545 DDEVGQMAVTSTHSDIFLFTSRGRVFAIRGHMIPETKTGKGRAVSKFVSLTDDERVVAMR 604 Query: 586 --LMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDML 643 L E+ LL + G G +L RAG+ +++L + + + + S +L Sbjct: 605 GTLEETATSHLLFITKRGIGKRMDAEELENLTRAGRRVLSLDDGDEIAAIIDTDGNSKVL 664 Query: 644 LAITQA 649 L ++A Sbjct: 665 LVTSKA 670 >UniRef50_A8UVW0 DNA gyrase A subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UVW0_9AQUI Length = 781 Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust. Identities = 206/474 (43%), Positives = 319/474 (67%), Gaps = 15/474 (3%) Query: 14 TENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGK 73 + +Y++Y+M VI+ RA+P + DGLKPVQRRI+YAM E+GL FKKSAR VG+VLGK Sbjct: 12 VKQSYIDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEMGLMPEKPFKKSARVVGEVLGK 71 Query: 74 YHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELL 132 +HPHGD A Y+A+V MAQ FS RYPL+ GQGN+G+ D DP A MRYTE++LSK + L Sbjct: 72 FHPHGDQAVYDALVRMAQDFSMRYPLIIGQGNYGSVDGDPP--AQMRYTEAKLSKVAVEL 129 Query: 133 LSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAA 192 L ++ + T D++PNFD +L EP +LP++ PN+L NGT GIAVG+AT IPPHNLREV +A Sbjct: 130 LEDIDKDTVDFIPNFDESLMEPAVLPSKFPNLLCNGTAGIAVGLATSIPPHNLREVGKAL 189 Query: 193 IALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA---VWKKED 249 + L P + +++L+IV+GPD+PT +I + +I++IYE GRG V+++A V K + Sbjct: 190 VELAKNPNMSTEEILEIVKGPDFPT-GGVIENYKDIKEIYETGRGIVQVKAKAHVEKVQG 248 Query: 250 G--AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVD 307 G +++S +P+QV+ A ++++IA +R+ +L + D+RDESD + +++ Sbjct: 249 GREQIIVSEIPYQVNKAELIKKIADNVRSGRLKEISDIRDESDKDGIR--IVIELKREAK 306 Query: 308 MDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367 ++V+ LF T L K + +NL ++ ++G P + + E+L E++ R + RR + L+ Sbjct: 307 GEKVLKKLFKYTQLRKGFPVNL-VVLINGEPKLVGIKELLREFIKHRLSIILRRTRFFLK 365 Query: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQAEAILELKLRH 424 K RLH+++GLL+A N+DEVIE IR E + L +RFGLTE QA+A+L+L+L Sbjct: 366 KAEDRLHVVQGLLIALNNLDEVIEGIRRSKDVQEAREMLQARFGLTERQAQAVLDLRLHR 425 Query: 425 LAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRS 478 L LE K+R E+++L ++ + + ++ SE + + +E + + +GD RR+ Sbjct: 426 LTSLERDKLRQEEADLLQKIEYYRKVVGSEEERIKIFVEETENLVKKFGDPRRT 479 >UniRef50_C0R046 DNA gyrase subunit A n=2 Tax=Brachyspira RepID=C0R046_BRAHW Length = 834 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 239/665 (35%), Positives = 376/665 (56%), Gaps = 40/665 (6%) Query: 17 AYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHP 76 +YL Y+M VI+ RALP + DGLKPV RRI+YAM + L +KKSA TVG+VL +YHP Sbjct: 39 SYLTYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKKSAATVGEVLARYHP 98 Query: 77 HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSEL 136 HGD+A Y MV MAQ FS RY LVDGQGN+G+ DD AAMRYTE+R+++++E +L+++ Sbjct: 99 HGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSIDDDPP-AAMRYTEARMTRFAEEMLNDI 157 Query: 137 GQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALI 196 + T +VPNFD + EP +LPA +P +L+NG+ GIA+GMAT++PPHNL+EV A + I Sbjct: 158 EKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPPHNLKEVVNAIVYYI 217 Query: 197 DQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW-----KKEDGA 251 D + L+ VQGPD+PT A II + I++ Y G+G +++RA K++ A Sbjct: 218 DHQDAEIKDLMRYVQGPDFPT-AGIIYGKEGIKEAYTTGKGRIKLRARLEVEETKRDREA 276 Query: 252 VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQV 311 +V+ LP+ V + E+IA ++ K+ V D+RDES + RL+I + V V Sbjct: 277 IVVKELPYGVVKTTLHEKIADLVKQGKIEGVADIRDESSNRAGIRLIIELKKG-VATQIV 335 Query: 312 MNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLK 371 +N L+ TDLE ++ I +N+ ++G P V NL E++ ++ R + + +R Y L + Sbjct: 336 LNQLWKHTDLETTFGI-INLALVNGEPKVLNLKELIKYFVDHRVEVITKRTEYDLNQAKA 394 Query: 372 RLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEAILELKLRHLAKL 428 + HILEGLL+A NI+EVI IIR N D + LM+RF L+E QA+AIL++ L+ L L Sbjct: 395 KAHILEGLLIAQANIEEVIRIIRESENTDAARTTLMNRFKLSEKQAQAILDMPLKRLTAL 454 Query: 429 EEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKA 488 E++KI E +L + + +LA K+ ++K EL+ ++ YGDDRRS + + Sbjct: 455 EKLKIEQELQQLREFIAYCEDLLAHPEKILAVIKDELKKISEKYGDDRRSEIIGKTNDTE 514 Query: 489 MSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKA--------------GDSFKAA 534 + E D++ E V + ++ G+++ P +Y+ G+ + Sbjct: 515 IDEEDLIHDEDVAVSITTQGFIKR-------VPASSYRTQGRGGVGVQGGKSQGEHYIEH 567 Query: 535 VKGKSNQPVVFVDST-GRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHMLMESD- 590 + S + +F+ + G+++ + +P S QG+ + L L P + S+ Sbjct: 568 LFVASTKDYLFIFTDRGKAFWMKVHEIPALSKISQGKSIKFILNLAPEEKITSYFTVSEF 627 Query: 591 --DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQ 648 Q ++M + G L + G +TL N ++ ++ D ++ T Sbjct: 628 DPKQSIIMVTKMGTIKKMELKHLENAKKRGILALTLENNDELVAVSPVQTGDDFIMT-TA 686 Query: 649 AGRML 653 AG L Sbjct: 687 AGLAL 691 >UniRef50_D1N7T7 DNA gyrase, A subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7T7_9BACT Length = 885 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 247/694 (35%), Positives = 388/694 (55%), Gaps = 51/694 (7%) Query: 1 MSDMAER---LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 57 MSD+ R + + + AYL YS+ V + RA+P + DGLKPV RRI+YAM +LGL S Sbjct: 1 MSDLGTRDFQVNIEDIMHTAYLQYSLSVNVGRAIPDVRDGLKPVNRRILYAMRQLGLGKS 60 Query: 58 AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFA 116 K AR VG+V+GKYHPHGD+A Y+A+V +AQ FS R PL++GQGN+G D DP A Sbjct: 61 HATVKCARVVGEVMGKYHPHGDAAIYDALVRLAQDFSMRNPLIEGQGNFGNIDGDPA--A 118 Query: 117 AMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGM 176 A RYTE R+ + +E LL+++ + T + +PNFD + EP++LPAR P +L+NGTTGI VGM Sbjct: 119 ASRYTECRMERLAEELLADIEKDTVNMIPNFDESETEPEVLPARYPQLLVNGTTGIGVGM 178 Query: 177 ATDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR 236 AT IPPHNL EV A I L+D PK T+D+L++ + GPD+PT A II R +R+ Y+ G Sbjct: 179 ATSIPPHNLGEVIDATICLLDNPKATVDELMEYLPGPDFPTGA-IIRGRYSMRQFYQTGH 237 Query: 237 GSVRMRA----VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHE 292 GS+++RA + K +++S +P+ + +++++IA + +K++ + LRDES Sbjct: 238 GSIKIRAKADIIEKDGREQIIVSEIPYAICKEQLVKKIAELVNDKRITGISGLRDESSKR 297 Query: 293 NPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLD-GRPAVKNLLEILSEWL 351 R+VI + + V+N LFA T LE + I M+ +D RP NL+++L ++ Sbjct: 298 TGMRIVIEIKRGAMG-SVVLNQLFAHTMLETT--IGCTMLVVDHNRPRTMNLVQVLQAYI 354 Query: 352 VFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFG 408 R + + RR + L+K R HILEGL+ A NI++V++IIR + A L++RF Sbjct: 355 DHRLEVIVRRTLFELKKAQARAHILEGLMKALANINDVVQIIRESRSRQDAAANLIARFE 414 Query: 409 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 T+ Q +AIL+++L L L + E EL+K + L + AS ++K EL+ Sbjct: 415 FTQIQVDAILDMRLHQLTGLAIETLTAEYEELKKRIEYLTALAASREMQLGVIKDELKEI 474 Query: 469 AQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV------------RSAKGH 516 + Y D RR+ + + ++ D++P I +S G++ R KG Sbjct: 475 REKYADPRRTEITIDDTDLNIA--DLIPRHSCVITVSNTGYIKRVPADTYRTQHRGGKG- 531 Query: 517 DIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKL 574 G+ K D + S+ + F G Y ++ +P S G+G +T + Sbjct: 532 ---IIGMETKEEDHVEHLFNADSHDIIFFFTDRGFMYWLNVYEIPEGSRTGKGRAITNMI 588 Query: 575 TLPPGATVDHMLM----ESDD--QKLLMASDAGY---GFVCTFNDLVARNRAGKALITLP 625 + PG + ML E DD + ++MAS G+ + F +L R G + + Sbjct: 589 KVEPGEKICAMLTVRQEEFDDPNKYIVMASRRGFIKKSELALFKNL---RRVGLRALVIE 645 Query: 626 ENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD 659 E+ ++ + E+ +++LL+ T+ G +F D Sbjct: 646 EDDDLIGAGISENGNEILLS-TKFGMACLFDQDD 678 >UniRef50_C5CCL2 DNA topoisomerase IV subunit A n=41 Tax=Actinobacteria (class) RepID=C5CCL2_MICLC Length = 868 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 275/743 (37%), Positives = 401/743 (53%), Gaps = 50/743 (6%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 + E E ++L Y+ VI RALP DGLKPVQRRI++ MS +GL KSAR VG+ Sbjct: 31 VSEEMEASFLEYAYSVIYSRALPDARDGLKPVQRRILFMMSRMGLRPDRGHVKSARVVGE 90 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 V+GK HPHGD+A Y+AMV +AQPFS R P+VDG GN+G+ DD AA RYTE+R++ + Sbjct: 91 VMGKLHPHGDAAIYDAMVRLAQPFSLRLPVVDGHGNFGSLDD--GPAAPRYTEARMAPAA 148 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 L ++L +GT D+VPN+D Q+P +LPA PN+L+NGTTGIAVGMAT++ PHNLREV Sbjct: 149 LALTADLDEGTVDFVPNYDNQFQQPAVLPAAYPNLLVNGTTGIAVGMATNMAPHNLREVV 208 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED 249 A L+ P+ L+ ++ + GPD P+ I+ +R Y GRG+ RMRA E Sbjct: 209 AGARHLLADPEAGLEAIMAHIPGPDLPSGGRIVGLDG-VRDAYATGRGTFRMRAAVAVEQ 267 Query: 250 -----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 +V++ LP+ V +V+E+I A + KKL + D+ D +D +N RL I +S Sbjct: 268 VSARRTGLVVTELPYGVGPEKVIERIKAGVDAKKLSGIADVVDLTDRKNGLRLQIELKSG 327 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 364 + V+ L+ T LE+++ IN N+ +DG+P LL +L ++ R D VRRR + Sbjct: 328 -FNPQAVLAALYRHTPLEETFGIN-NVALVDGQPQTLGLLPLLRVYVDHRLDVVRRRTGH 385 Query: 365 RLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEAILELK 421 RL K RLH++EGLL+A ++IDEVIEIIR+ D+ A LM F LT+ QA+ ILEL+ Sbjct: 386 RLGKHRDRLHLVEGLLLALVDIDEVIEIIRSSDDTAAARTRLMGVFDLTQVQADHILELR 445 Query: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQ 481 LR L K ++++ E+ EL+ +L+ ILAS+ ++ ++ ELQA A +GDDRR+ L Sbjct: 446 LRQLTKFSRIELQAERDELQAAIAELEAILASDARLREVVSAELQAVADEHGDDRRTVLL 505 Query: 482 EREEAKAMSEHD-----------------MLPSEPVTIVLSQMG-WVRSAKGHDIDAPGL 523 E E A A + M+P +LS G +R+A I AP Sbjct: 506 EAETAAAPAAGPAPSGPTPAGAAEAGVDLMVPDTACWALLSTSGRLLRTADRTPI-APQG 564 Query: 524 NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTG---KLTLPPGA 580 + D+F + V + + + S G + + + LP A GEP LP Sbjct: 565 RRRKHDAFASVVPTTARGEIGALTSAGALHRLQAVDLPVA---GEPSAAPAMTAALPAAE 621 Query: 581 TV----DHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVI 636 V L+ +MA +G V NR + L + V+ Sbjct: 622 LVPLAKGETLVALVPLDTVMALGTAHGVVKRVRPEWPLNRQVVDAVALKDGDAVVGAAPA 681 Query: 637 EDASDMLLAITQAGRMLMFPVSDL-PQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQ 695 D +D L+ +T+ G++L + S + PQ G G I + A G+ LA + + P Sbjct: 682 PDEADQLVFLTRTGQLLRYAASAVRPQGPAGGGVAGIRL-----AAGDTVLA--FGVAPA 734 Query: 696 STLTIHVGKRKIKLRPEELQKVT 718 ++LT RP + VT Sbjct: 735 ASLTETGADAAAHPRPAVVVTVT 757 >UniRef50_Q7UU73 DNA gyrase subunit A n=1 Tax=Rhodopirellula baltica RepID=Q7UU73_RHOBA Length = 825 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 261/738 (35%), Positives = 401/738 (54%), Gaps = 67/738 (9%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 + + L ++ YLNYS+ VI RALP + DGLKPVQRR++Y MS L L++SAK K A+ Sbjct: 32 QNIPLRFAAQDRYLNYSLSVITSRALPDVRDGLKPVQRRVLYTMSLLRLDSSAKHSKCAK 91 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 VGDV+GKYHPHGDS+ YEA+V M+Q FS R P++DG GN+G+ D + AAMRYTE R+ Sbjct: 92 VVGDVMGKYHPHGDSSIYEALVRMSQSFSLRMPMIDGSGNFGSIDGDNA-AAMRYTECRM 150 Query: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 + + +L++L T + PN+DGT +EP +LP+R+P++L+NG TGIAVGMAT+IPPHNL Sbjct: 151 TPIASEVLADLSSRTVAFKPNYDGTREEPVVLPSRVPSLLVNGATGIAVGMATNIPPHNL 210 Query: 186 REVAQAAIALIDQPKTTLDQLL--DIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 +EV A + L+ P+ QL+ D +QGPD+PT I ++ E+R+IY G G++++R Sbjct: 211 KEVCNALLKLLANPEIKDYQLVAGDAIQGPDFPTGGHITNTKEELREIYATGTGTIKLRG 270 Query: 244 VW----KKEDGAVV-ISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 V K G + I+ +P V+ A ++E+IA + + KLP+V ++RD S + R+ Sbjct: 271 VAEVAEKSRTGDTLRITEIPFGVNKAAMVERIAELVYSSKLPLVQEVRDLSTED--IRVD 328 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK-----NLLEILSEWLVF 353 ++ + N D D+V+ +L+ T L+ ++ +NL + P V L EIL +L F Sbjct: 329 LLLKKN-ADADKVLAYLYKHTPLQTNFNVNLTCLTPTENPEVGAPKRLGLKEILWYFLHF 387 Query: 354 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRF--- 407 R D + RL L + KR+HILEGL + F +DE+I+IIR+ + A +M RF Sbjct: 388 RLDVLTARLTNELRALEKRIHILEGLALIFDALDEIIKIIRSSEGKADAAEKIMKRFPVK 447 Query: 408 ---------------GLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILA 452 GL Q +AILELKL LA+LE + E + K D++ +LA Sbjct: 448 ELTPAQARRKTRASNGLDAEQTDAILELKLYRLARLEINVVLDELKKKRKRVDEINKLLA 507 Query: 453 SERKMNN------LLKKELQADAQAYGDD----RRSPLQEREEAKAMSEHDMLPSEPVTI 502 +R ++K+ELQ+ YG+ RRS + E +E D + +E + Sbjct: 508 DDRDDYTSSGRWAIIKEELQSLISDYGNTPAGRRRSTIVVPTEEVEYTEEDFIVAEDCHV 567 Query: 503 VLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562 +++ GWV+ K D + GD+ A V G + + F S G Y I +P+ Sbjct: 568 MVTVDGWVKRQK-QIADPSKSRLRQGDAVLACVAGNTRTTLAFFSSLGVCYTARMIDIPA 626 Query: 563 ARGQGEPLTGKLTLPPGATVDHML-ME-------SDDQK--------LLMASDAGYGFVC 606 + G GEP+ G + L M+ S+D K L AS GY Sbjct: 627 STGFGEPIQKLFKFKDGERIIAALSMDPRILGDISEDPKGNYYPATHALAASTDGYALRF 686 Query: 607 TFNDLVA-RNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS- 664 RAG+ + A ++ V I ++ +LA++ R ++ P ++ LS Sbjct: 687 GLQPFAEPSTRAGRKFARVKPGASIVDVVPIA-GTETVLAVSADARAMVCPADEINYLSG 745 Query: 665 KGKGNKIINIPSAEAARG 682 GKG ++ + +++ G Sbjct: 746 AGKGVLLLKLAASDKLLG 763 >UniRef50_Q5YLB5 DNA gyrase subunit A, chloroplastic/mitochondrial n=14 Tax=cellular organisms RepID=GYRA_NICBE Length = 935 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 248/683 (36%), Positives = 391/683 (57%), Gaps = 37/683 (5%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 LH+ AY++Y+M V++ RALP + DGLKPV RRI+YAM ELGL++ +KK AR VG+ Sbjct: 95 LHKEATEAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHELGLSSKKPYKKCARVVGE 154 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKY 128 VLGK+HPHGD+A Y+++V MAQ FS R PL+ G GN+G+ D DP AAMRYTE RL Sbjct: 155 VLGKFHPHGDTAVYDSLVRMAQDFSLRSPLIRGHGNFGSIDADPP--AAMRYTECRLEAL 212 Query: 129 SE-LLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 +E +LL++L Q T D+VPNFD + +EP +LPAR+PN+LLNG +GIAVGMAT+IPPHNL E Sbjct: 213 TESMLLADLEQNTVDFVPNFDNSQKEPSLLPARVPNLLLNGASGIAVGMATNIPPHNLGE 272 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW-- 245 + A ALI P+ TL +LL+ + GPD+PT I+ + + + + GRG V +R Sbjct: 273 LVDALSALIHNPEATLQELLEYMPGPDFPTGGIIMGNIGIL-EAFRTGRGRVVIRGKTDI 331 Query: 246 -----KKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 K + A++I +P+Q + A ++E+IA + NK L V D+RDESD ++ + Sbjct: 332 ELLDSKTKRAAIIIQEIPYQTNKASLVEKIADLVENKILEGVSDIRDESDRSGMRIVIEL 391 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIG-LDGRPAVKNLLEILSEWLVFRRDTVR 359 R + D V+N+L+ T L+ S+ + NM+G L+G+P + L E+L +L FR V Sbjct: 392 KRGS--DPAIVLNNLYRLTALQSSF--SCNMVGILNGQPKLMGLKELLQAFLDFRCSVVE 447 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALM---SRFGLTETQAEA 416 RR ++L + +R HI+EG++V N+DEVI IR A F L+E QAEA Sbjct: 448 RRARFKLSQAQERNHIVEGIIVGLDNLDEVINTIRKASSNALAAASLRKEFELSEKQAEA 507 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDR 476 IL++ LR L LE K E L + +L+ +L+S++++ L+++E + + R Sbjct: 508 ILDISLRRLTALERNKFVEEGKSLRTQISKLEELLSSKKQILQLIEEEAIEIKNKFFNPR 567 Query: 477 RSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGL--------NYKAG 528 RS L++ + + + D++P+E + + +S+ G+V+ K + + Sbjct: 568 RSMLEDTDSGD-LEDIDVIPNEEMLLAISEKGYVKRMKPDTFNLQNRGTIGKSVGKLRVN 626 Query: 529 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHML 586 D+ + +++ V++ G Y+ +P S G PL L+L G + ++ Sbjct: 627 DAMSDFLVCRAHDKVLYFSDKGTVYSSPAYKIPECSRTAAGTPLVQILSLSDGERITSII 686 Query: 587 MESD---DQKLLMASDAGYGFVCTFNDLVARNRAGKALITL-PENAHVMPPVVIEDASDM 642 S+ DQ L+M + GY + N + G I L P++ + V +D Sbjct: 687 PVSEFAADQYLVMLTVNGYIKKVSLNYFASIRCTGIIAIQLVPDDE--LKWVKCCSNNDF 744 Query: 643 LLAITQAGRMLMFPVSDLPQLSK 665 + +Q G +++ P +++ L + Sbjct: 745 VAMASQNGMVILTPCANIRALGR 767 >UniRef50_D0SBV6 Type IIA topoisomerase n=3 Tax=Gammaproteobacteria RepID=D0SBV6_ACIJO Length = 993 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 235/638 (36%), Positives = 359/638 (56%), Gaps = 67/638 (10%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 +A+ + +N+YL+Y+M VI+ RALP + DGLKPV RR++YAM ELG + + +KKSAR V Sbjct: 9 IAIEDELKNSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSARVV 68 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 GDV+GKYHPHGDSA YE +V MAQ FS RY LVDGQGN+G+ D S AAMRYTE R+ K Sbjct: 69 GDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSV-DGDSAAAMRYTEVRMRK 127 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 + +L++L + T DW N+DG+ + P+++P R+PN+L+NGTTGIAVGMAT++ PHN+ E Sbjct: 128 LTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPHNMTE 187 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 V A +A + P +++ L++ + GPD+PT II +A I Y G+G + +R + Sbjct: 188 VVNACLAYAENPNISIEGLMEYISGPDFPT-GGIIYGKAGIVDAYRTGKGRLHIRGKYHF 246 Query: 248 EDG------AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 E+ +V + +P+QV+ A+ +E+IA ++ KKL + +LRDESD + + + Sbjct: 247 EEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKDGMRIAIDLK 306 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLD-GRPAVKNLLEILSEWLVFRRDTVRR 360 R ++ V+N+LF T LE S+ I NM+ LD G+P + NL +I++ ++ R++ V R Sbjct: 307 RGENAEV--VVNNLFQNTQLENSFSI--NMVCLDNGQPKLMNLKDIVAAFIRHRQEVVTR 362 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKP----------------ALM 404 R + L K +R HILEGL VA NID +IE I+ P AL+ Sbjct: 363 RTMFELRKARERGHILEGLTVALANIDAIIETIKTSANPAEARERLQAGEWAAGNVIALL 422 Query: 405 SRFG--------------------------LTETQAEAILELKLRHLAKLEEMKIRGEQS 438 + G L+ Q AILEL+L L LE+ K++ E + Sbjct: 423 EKAGSVSVRPDEIEGEDPSRPFGLDGQIYRLSPAQVGAILELRLHRLTGLEQDKLQAEYT 482 Query: 439 ELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSE 498 E+ + +L IL + ++K+EL Q YGD RR+ + E S D++P E Sbjct: 483 EILGQIAELTAILNDFNLLMAVIKEELALILQQYGDARRTAIVESR--IDFSREDLIPEE 540 Query: 499 PVTIVLSQMGWVRSAKGHDIDA--------PGLNYKAGDSFKAAVKGKSNQPVVFVDSTG 550 V + +S+ G+ ++ D A + K D + + ++ V+ + G Sbjct: 541 QVVLTVSKTGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVTSNHATVLCFTNVG 600 Query: 551 RSYAIDPITLPSA-RG-QGEPLTGKLTLPPGATVDHML 586 + Y + +P A RG +G P+ L L T+ +L Sbjct: 601 KVYRLRVFEVPQASRGSKGRPMVNLLPLDADETITAIL 638 >UniRef50_C6RQR3 DNA gyrase, A subunit n=3 Tax=Moraxellaceae RepID=C6RQR3_ACIRA Length = 985 Score = 394 bits (1012), Expect = e-108, Method: Compositional matrix adjust. Identities = 236/638 (36%), Positives = 358/638 (56%), Gaps = 67/638 (10%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 +A+ + +++YL+Y+M VI+ RALP + DGLKPV RR++YAM ELG + + +KKSAR V Sbjct: 9 IAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSARVV 68 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 GDV+GKYHPHGDSA YE +V MAQ FS RY LVDGQGN+G+ D S AAMRYTE R+ K Sbjct: 69 GDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDG-DSAAAMRYTEVRMRK 127 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 + +L++L + T DW N+DG+ + P+++P R+PN+L+NG GIAVGMAT++ PHN+ E Sbjct: 128 LTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGAAGIAVGMATNMAPHNMTE 187 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 V A +A D +++ L++ + GPD+PT II ++ I Y G+G + +R + Sbjct: 188 VVNACLAYADNTNISVEGLMEYISGPDFPT-GGIIYGKSGIVDAYRTGKGRLHIRGKYHF 246 Query: 248 ED------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 E+ +V + +P+QV+ ARV+E+IA ++ KKL + +LRDESD + + + Sbjct: 247 EEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAIDLK 306 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLD-GRPAVKNLLEILSEWLVFRRDTVRR 360 R ++ V+N+LF T LE S+ I NM+ LD G+P + NL +I++ ++ R++ V R Sbjct: 307 RGENAEV--VVNNLFLNTQLENSFSI--NMVCLDNGQPKLMNLKDIIAAFIRHRQEVVTR 362 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKP----------------ALM 404 R Y L K +R HILEGL VA NID++I+ I+ P A++ Sbjct: 363 RTMYELRKARERGHILEGLTVALANIDDIIDAIKTSANPAEARERLLAADWAAGGVGAML 422 Query: 405 SRFG--------------------------LTETQAEAILELKLRHLAKLEEMKIRGEQS 438 R G L+ TQ AILEL+L L LE+ K+ E S Sbjct: 423 ERAGSVSIRPDEIEGEDPSRPFGLDRDIYRLSPTQVAAILELRLNRLTGLEQDKLHAEYS 482 Query: 439 ELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSE 498 E+ + +L IL + ++K+EL Q YGD RR+ + E S D++P E Sbjct: 483 EILGQITELTAILNDFNLLMAVIKEELVLVLQQYGDARRTEIVESR--IDFSREDLIPEE 540 Query: 499 PVTIVLSQMGWVRSAKGHDIDA--------PGLNYKAGDSFKAAVKGKSNQPVVFVDSTG 550 V + +SQ G+ ++ D A + K D + + ++ V+ + G Sbjct: 541 QVVLTVSQSGYAKTQPLSDYAAQRRGGRGKSATSMKEDDFIQHLIVTSNHATVLCFTNVG 600 Query: 551 RSYAIDPITLPSA-RG-QGEPLTGKLTLPPGATVDHML 586 + Y + +P A RG +G P+ L L T+ +L Sbjct: 601 KVYRLRVFEVPQASRGSRGRPMINLLPLDANETITAIL 638 >UniRef50_D1Y742 DNA gyrase, A subunit n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y742_9BACT Length = 871 Score = 394 bits (1011), Expect = e-108, Method: Compositional matrix adjust. Identities = 249/656 (37%), Positives = 380/656 (57%), Gaps = 26/656 (3%) Query: 17 AYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHP 76 +YL+Y+M VI+ RALP DGLKPVQRR++Y M LG+ + +KKSAR VG+V+GKYHP Sbjct: 21 SYLDYAMSVIVGRALPDARDGLKPVQRRVLYGMLGLGIRHNQAYKKSARVVGEVMGKYHP 80 Query: 77 HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSEL 136 HGD++ Y+ MV +AQP++ RYPLVDGQGN+G+ D + AAMRYTE+R ++ EL+L ++ Sbjct: 81 HGDASIYDTMVRLAQPWNLRYPLVDGQGNFGSVDGDGA-AAMRYTEARFAELGELMLQDI 139 Query: 137 GQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALI 196 + T DW PNFD +L+EP LP+ +PN+L+NG+TGIAVGMAT++PPHNL EV A LI Sbjct: 140 DEDTVDWGPNFDESLKEPLTLPSLVPNLLVNGSTGIAVGMATNMPPHNLGEVIDALCCLI 199 Query: 197 DQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDG----AV 252 D P+ L +L++ + GPD+PT II R I Y GRG + +R E+G +V Sbjct: 200 DHPEAELGELMNYLPGPDFPT-GGIIMGREGIVDAYRTGRGKIIVRGRCVVEEGKRRTSV 258 Query: 253 VISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNR-VDMDQV 311 VI+ +P+ V+ ++E IA ++ + V DLRDESD + L IV NR D + V Sbjct: 259 VITEIPYMVNKTTLIEGIAKCVQEHTIDGVSDLRDESDRQG---LRIVLDLNRDGDPELV 315 Query: 312 MNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLK 371 L+ T ++ ++ + +N+ +D RP L +L +L +RRD VRRR +RL K + Sbjct: 316 QRQLYNRTLMQSTFGV-INLTLVDQRPVELGLKSMLEVFLDYRRDVVRRRTAFRLAKAQE 374 Query: 372 RLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEAILELKLRHLAKL 428 R HI+EGL A IDEVI IIR +E L + +E QA+AIL+++L+ L L Sbjct: 375 REHIIEGLCRALDMIDEVIRIIRGAQTAEEASHGLTEQLQFSEKQAQAILDMRLQRLTGL 434 Query: 429 EEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKA 488 E K+ E ++L + + Q ILA + ++ +++ EL +GD RR+ +Q E+ + Sbjct: 435 ERDKLTAEMAQLLADIARYQEILADAKTLDGVIRDELAELRHKFGDKRRTEIQLHVESTS 494 Query: 489 MSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GLNYKAGDSFKAAVKGKSN 540 S D++P E + I LS+ G++R + D + G N D V ++ Sbjct: 495 DSYEDLMPEENIVITLSKDGYLRRSLLKDYNVQNRGGKGRRGANLHEEDQVAGMVVTTTH 554 Query: 541 QPVVFVDSTGRSYAIDPITLPSAR-GQGEPLTGKLTLPPGATVDHMLMESDDQ--KLLMA 597 V+ S GR +AI +P + G+G + ++L G TV +L D +++ Sbjct: 555 NDVLLFTSRGRVFAIKGHMVPETKSGKGRKVEQFISLSEGETVVEILGRFPDNCSTVVLI 614 Query: 598 SDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRML 653 + G ++L RAG+ ++TL ++ + + + D L ++ GR L Sbjct: 615 TRRGIAKRMDKSELQNLTRAGRQIMTL-DDGDDIARIRCTNGLDDLFLVSAMGRGL 669 >UniRef50_C1TNA3 DNA gyrase subunit A n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TNA3_9BACT Length = 814 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 253/680 (37%), Positives = 396/680 (58%), Gaps = 53/680 (7%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 R L E + +YL+Y+M VI+ RALP DGLKPVQRRI++AM ELGL + +KKSAR Sbjct: 12 RHPLVEEIKRSYLDYAMSVIVGRALPDARDGLKPVQRRILFAMQELGLRHNQSYKKSARV 71 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VG+ +GKYHPHGDSA Y+ MV +AQ FS RY LVDGQGN+G+ D S AAMRYTE+RL Sbjct: 72 VGETMGKYHPHGDSAIYDTMVRLAQNFSMRYTLVDGQGNFGSI-DGDSAAAMRYTEARLQ 130 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 + EL+L ++ + T +W PNFD +L+EP +LP+++PN+L+NG+TGIAVGMAT++PPHNL Sbjct: 131 ELGELMLQDIDEDTVEWGPNFDESLKEPMVLPSQVPNLLVNGSTGIAVGMATNMPPHNLG 190 Query: 187 EVAQAAIALIDQ-PKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245 EV A LI+ + +L+ + GPD+PT +I + I Y GRG + ++ + Sbjct: 191 EVVDAICYLIEAGDQADFGELMARMPGPDFPT-GGVILGKDGIIDAYRTGRGRLVVQGLV 249 Query: 246 KKEDGA-----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 E+G VVI+ +P+ V+ ++E IA+ ++NK + V D+RDESD + V++ Sbjct: 250 HVEEGKRGKSNVVITEIPYMVNKTTMIETIASCVQNKTIDGVTDIRDESDRKGLR--VVL 307 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360 S VD D V+ L+ + L+ ++ + +N+ +DGRP +L ++L+ +L RR VRR Sbjct: 308 EVSRDVDPDLVIRQLYRRSQLQNTFGV-INLALVDGRPVELSLTDMLNVFLGHRRTVVRR 366 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAEAI 417 R +RL+K R HILEGL+ A ID VI +IR D K L++ +E QA+AI Sbjct: 367 RTEFRLKKAEARAHILEGLVKALDVIDRVIALIRGSDNAALAKERLVAELDFSEIQAQAI 426 Query: 418 LELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRR 477 L++KL+ L LE K+ E + L + + + IL SE+ ++ ++ +EL A YGDDRR Sbjct: 427 LDMKLQRLTGLERDKLNDEFAGLLADIQRYRSILDSEKVLDGVIVEELVALKGKYGDDRR 486 Query: 478 SPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSA--KGHDIDAPGLNYKAG------D 529 + + +R + S+ D++P E + ++LS+ G++R + + + A G + G D Sbjct: 487 TKIVDR-VGQDCSDEDLIPREDIVVMLSRDGYLRRVPLEDYSLQAKGGKGRRGARLREED 545 Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589 ++ + + GR +AI + +R L GK ++ +E+ Sbjct: 546 EVSLMGVSTTHDDIFLFTTKGRVFAIKGYIISESRTGKGKLIGK----------YISLEN 595 Query: 590 DDQKLLMAS----DAGYGFVCTFNDLVAR---------NRAGKALITLPEN---AHVMPP 633 D++ + M + ++G+ F T + R RAG+ ++TL E A ++P Sbjct: 596 DERVVSMKTRRGQESGFLFFLTRRGIAKRLPSSELDNLTRAGRRVVTLDEGDEIAQILPT 655 Query: 634 VVIEDASDMLLAITQAGRML 653 ++D LL ++ G+ L Sbjct: 656 SGMDD----LLLVSAMGQAL 671 >UniRef50_O51396 DNA gyrase subunit A n=18 Tax=Borrelia burgdorferi group RepID=GYRA_BORBU Length = 810 Score = 392 bits (1008), Expect = e-107, Method: Compositional matrix adjust. Identities = 230/675 (34%), Positives = 394/675 (58%), Gaps = 31/675 (4%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 + +YLNY+M VI+ RALP + DGLKPV RRI+Y+M E+GL + FKK+ R VGDVLGKY Sbjct: 20 KTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFKKAGRIVGDVLGKY 79 Query: 75 HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133 HPHGD + Y+A+V +AQ FS RYP++ GQGN+G+ D DP AAMRYTE+++ K +E ++ Sbjct: 80 HPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPP--AAMRYTEAKMEKITEYIV 137 Query: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193 ++ + T ++ N+D +L EP+++P+ P +L+NG++GIAVGMAT++ PHNLRE+ A + Sbjct: 138 KDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAPHNLREICDAIV 197 Query: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED---- 249 ++D ++ LL IV+GPD+PT EI+ + I K Y+ G+GSV +RA + E+ Sbjct: 198 YMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLI-KAYKTGKGSVVIRARYHIEERAED 256 Query: 250 -GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308 A++++ +P+ V+ + +L ++A + +KL + D+RDESD E ++ V R D Sbjct: 257 RNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRIVLEVKRG--FDP 314 Query: 309 DQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEK 368 +MN L+ T+ +K + IN N+ ++G P NL E+L E++ R++ + RR+ + L K Sbjct: 315 HVIMNLLYEYTEFKKHFSIN-NLALVNGIPKQLNLEELLFEFIEHRKNIIERRIEFDLRK 373 Query: 369 VLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEAILELKLRHL 425 ++ H+LEGL +A NIDEVI+II++ K A L+S FGL+E QA ++L+++L+ L Sbjct: 374 AKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDARERLVSNFGLSEIQANSVLDMRLQKL 433 Query: 426 AKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREE 485 LE K+ E + L + IL + ++ N++++E +GD+RR+ + EE Sbjct: 434 TALEIFKLEEELNILLSLIKDYEDILLNPVRIINIIREETINLGLKFGDERRTKIIYDEE 493 Query: 486 AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKA--------GDSFKAAVKG 537 S D++ E + ++L++ G+++ ++ G K GD A+ Sbjct: 494 VLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCV 553 Query: 538 KSNQPVVFVDSTGRSYAIDPITL--PSARGQGEPLTGKLTLPPGA---TVDHMLMESDDQ 592 ++ + + + G+ Y I+ + S +G+ ++ + L T+ + +DD Sbjct: 554 NTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNSKDLTDDA 613 Query: 593 KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPP-VVIEDASDMLLAITQAGR 651 LL+ + +G D A G +I L + V +V +D + ++ +++ G Sbjct: 614 YLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKD--EKVICLSKKGS 671 Query: 652 MLMFPVSDLPQLSKG 666 +F D+ ++G Sbjct: 672 AFIFNSRDVRLTNRG 686 >UniRef50_Q8DPM2 DNA gyrase subunit A n=213 Tax=Bacteria RepID=GYRA_STRR6 Length = 822 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 243/695 (34%), Positives = 390/695 (56%), Gaps = 42/695 (6%) Query: 17 AYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHP 76 ++++Y+M VI+ RALP + DGLKPV RRI+Y M+ELG+ KKSAR GDV+GKYHP Sbjct: 18 SFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARITGDVMGKYHP 77 Query: 77 HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSEL 136 HGDS+ YEAMV MAQ +SYRY LVDG GN+G+ D S AA RYTE+R+SK + +L ++ Sbjct: 78 HGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSM-DGDSAAAQRYTEARMSKIALEMLRDI 136 Query: 137 GQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALI 196 + T D+V N+D +EP +LPAR PN+L+NG TGIAVGMAT+IPPHNL E A ++ Sbjct: 137 NKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPPHNLGETIDAVKLVM 196 Query: 197 DQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA----- 251 D P+ T L++++ GPD+PT A ++ ++ I K YE G+GS+ +R+ + E Sbjct: 197 DNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIVLRSRTEIETTKTGRER 255 Query: 252 VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQV 311 +V++ P+ V+ +V E I ++ K++ + +RDES+ E ++ V R ++ + Sbjct: 256 IVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVIEVKRDASANV--I 313 Query: 312 MNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLK 371 +N+LF T ++ ++ N+ I +G P + +L +IL ++ +++ V RR + EK Sbjct: 314 LNNLFKMTQMQTNFGFNMLAIQ-NGIPKILSLRQILDAYIEHQKEVVVRRTRFDKEKAEA 372 Query: 372 RLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEAILELKLRHLAKL 428 R HILEGLL+A +IDEVI IIR + E + LMS+F L+E Q++AIL+++LR L L Sbjct: 373 RAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQAILDMRLRRLTGL 432 Query: 429 EEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKA 488 E KI+ E +L L ILA +++ ++K EL + + D RR+ L + + Sbjct: 433 ERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRTELM-VGQVLS 491 Query: 489 MSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDA--------PGLNYKAGDSFKAAVKGKSN 540 + + D++ V I LS G+++ + A G K D + V ++ Sbjct: 492 LEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTH 551 Query: 541 QPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHML-MESDDQKLLMA 597 ++F + GR Y + +P +G P+ L L ++ ++ +ESD Sbjct: 552 DHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESD------R 605 Query: 598 SDAGYGFVCTFNDLVARN---------RAGKALITLPENAHVMPPVVIEDASDMLLAITQ 648 SD Y F T + +V R + G + L + ++ ++ E D+++ T+ Sbjct: 606 SDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIG-TK 664 Query: 649 AGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARG 682 G + F S + +S+ G K +N+ + G Sbjct: 665 FGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVG 699 >UniRef50_P57277 DNA gyrase subunit A n=76 Tax=Proteobacteria RepID=GYRA_BUCAI Length = 830 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 247/687 (35%), Positives = 394/687 (57%), Gaps = 47/687 (6%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 ++ + E +++YL+YSM VI+ RALP + DGLKPV RRI++AM L + + +KKSAR Sbjct: 10 QVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYKKSARI 69 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VGDV+GKYHPHGDSA Y+A+V MAQ FS RY L+DGQGN+G+ D S AAMRYTE R+S Sbjct: 70 VGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGD-SAAAMRYTEVRMS 128 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 K + LL++L + T +++PN+DGT P++LPA++PN+L+NG++GIAVGMAT+IPPHNL Sbjct: 129 KIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIPPHNLN 188 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA--- 243 EV +A ID TL++L+ + GPD+PT A II ++ I + Y G+G + +RA Sbjct: 189 EVINGCLAYIDNNDITLEELIKHIPGPDFPT-AAIINGKSGIEEAYRTGKGKIYIRAQNQ 247 Query: 244 ---VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 K + ++V + +P+QV+ +R++E+IA ++ K++ + LRDESD ++ R+VI Sbjct: 248 IEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESD-KDGMRIVIE 306 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGL-DGRPAVKNLLEILSEWLVFRRDTVR 359 + + + ++N L++ T L+ S+ I NM+ L G+P +L EIL +L R++ + Sbjct: 307 IKREAI-AEVILNQLYSLTQLQISFGI--NMVALCQGQPKTLSLKEILKNFLSHRQEIII 363 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFL--------------NID-EVIEIIRNEDEPKPALM 404 RR + L KV R+HILEGL +A + +ID + I I +N K + Sbjct: 364 RRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEKINYL 423 Query: 405 SR---FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLL 461 ++ + +E QA+AIL+L+L + LE+ KI E ++L K+ +L+ IL + +KM ++ Sbjct: 424 AKKHEYYFSEKQAQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENPKKMFEVI 483 Query: 462 KKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDA- 520 K EL + + D RR+ + E M D++ E V + LS G+V+ D +A Sbjct: 484 KSELLSIQNNFSDKRRTKITENHSDINM--EDLINQEDVVVTLSHSGYVKYQPLSDYNAQ 541 Query: 521 -------PGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLT 571 K D ++ V ++ ++ S G Y + LP S +G P+ Sbjct: 542 RRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPESSRHARGRPIV 601 Query: 572 GKLTLPPGATVDHML---MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENA 628 L L P + +L D+ + M + G + + AG I L N Sbjct: 602 NLLPLSPKERITAILPVHKYQDNLNIFMTTAHGIVKKSSLSQFKKPRFAGIIAINLHAND 661 Query: 629 HVMPPVVIEDASDMLLAITQAGRMLMF 655 ++ V + D ++ ++ TQ G+++ F Sbjct: 662 ELI-GVALTDGNNNIMLFTQNGKVVQF 687 >UniRef50_Q4A7J5 DNA gyrase subunit A n=5 Tax=Mycoplasma hyopneumoniae RepID=Q4A7J5_MYCH7 Length = 853 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 227/651 (34%), Positives = 375/651 (57%), Gaps = 28/651 (4%) Query: 17 AYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHP 76 ++L+YSM VI+ RALP + DGLKPV RRI+Y M+ELG+ + +KKSAR VGDVLGKYHP Sbjct: 58 SFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSYKKSARIVGDVLGKYHP 117 Query: 77 HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSEL 136 HGD++ YE+MV MAQPFS RYPLVDG GN+G+ D ++ AAMRYTE+RLSK S ++ L Sbjct: 118 HGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDEA-AAMRYTEARLSKISNKMIEGL 176 Query: 137 GQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALI 196 + T D+ PN+D + EP++LPA+ PN+L++G +GIAVGM T IPPHNL E+ + I Sbjct: 177 KKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKIPPHNLGEIIHSFIIFA 236 Query: 197 DQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GA 251 PK +++L+ + GPD+PT A I + I + Y G+GS +RA K E+ Sbjct: 237 KNPKIEINELISSLPGPDFPTGATIYGKKG-INQAYLTGKGSFIIRAKAKIENLNSGRSR 295 Query: 252 VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQV 311 ++ +P++V ++E++A +RNKK+ + D+RDES + + + ++ + Sbjct: 296 IIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIRVVFEIKKGFSPEI--I 353 Query: 312 MNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLK 371 +N L+ +TDL+ +Y IN+ + ++G P + NL +I + +L +++ R LN+ LEK + Sbjct: 354 LNKLYHSTDLQINYSINM-LALVNGVPKLMNLAQIFNYYLEHQKEINLRSLNFDLEKATE 412 Query: 372 RLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEAILELKLRHLAKL 428 +L++LEG+ VA NIDEVI+II++ + A L + L Q +AI+E++L L L Sbjct: 413 KLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNPGQTKAIIEMRLGRLTSL 472 Query: 429 EEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKA 488 K+ E EL+ E +++ I+ S +K+ +L+ ++ + +GD RRS + E Sbjct: 473 AIEKLNNEIEELKVEISEIKSIIDSPKKLIDLIIEQHKNVVAQFGDPRRSEII--PEIDC 530 Query: 489 MSEHDMLPSEPVTIVLSQMGWVRSAKGHD--------IDAPGLNYKAGDSFKAAVKGKSN 540 + E D++ E V I L+Q +V+ + I N+ D K+ + Sbjct: 531 LDEEDLIADEQVIISLTQNNYVKKMALDEYRLQNRGGIGTLASNHYKDDELKSLCITNTL 590 Query: 541 QPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHML---MESDDQKLL 595 ++ + S+ + + + +P S +G+G P+ + L ++ +++ E D+ L+ Sbjct: 591 SDLLIISSSAKIFKLRAHQIPDGSKQGKGIPILNLIKLEKNESISNLIPWNQEYDNHWLI 650 Query: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI 646 S G + + GK + L EN +++ + + D+ + I Sbjct: 651 TVSAFGNIKKTALSAFRNITKNGKIALKLAENDYLVSAFIAPNNPDLNILI 701 >UniRef50_P22446 DNA gyrase subunit A n=3 Tax=Mycoplasma RepID=GYRA_MYCPN Length = 839 Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust. Identities = 250/708 (35%), Positives = 388/708 (54%), Gaps = 49/708 (6%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 + ++L E +++ Y+M VI+ RALP DGLKPV RR++Y G++ FKKSAR Sbjct: 21 KNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHDRPFKKSAR 80 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 VGDV+ K+HPHGD A Y+ M MAQ FS RY L+DG GN+G+ D + AA RYTE+RL Sbjct: 81 IVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRP-AAQRYTEARL 139 Query: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 SK + LL ++ + T D+V N+DG QEP +LPA PN+L NG++GIAVGM+T IP HNL Sbjct: 140 SKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIAVGMSTSIPSHNL 199 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245 E+ Q I LID P T++ LL +++GPD+PT A II ++ I +E G+G+V +R+ Sbjct: 200 SELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTKG-IESYFETGKGNVVIRSKV 258 Query: 246 KKED----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 E A+V++ +P+ V+ ++E+I ++ +++ + D+RDES E RLVI Sbjct: 259 SIEQLPTRAALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESSREG-IRLVIEV 317 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGL-DGRPAVKNLLEILSEWLVFRRDTVRR 360 + + V + ++N LF +T L+ R +NM+ L G P + N+ + L+ +L + D + R Sbjct: 318 KRDTVP-EVLLNQLFKSTRLQ--VRFPVNMLALVKGAPKLLNMKQALTVYLEHQLDVLIR 374 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEAI 417 + + L+K +R HIL GLL+A LNIDEVI II+ N AL RFGL E QA A+ Sbjct: 375 KTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHERFGLDEIQARAV 434 Query: 418 LELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRR 477 L+++LR L+ LE K++ EQ EL+ + Q +LA ++ L+K++L + +GD RR Sbjct: 435 LDMRLRSLSVLEVNKLQTEQQELKALIEFCQQVLADKQLQLKLIKEQLTKINEQFGDPRR 494 Query: 478 SPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAG--------- 528 S + ++ + + D++ E V I +S G+++ +DA L ++ G Sbjct: 495 SEIL-YGISEDIDDEDLITQENVVITMSTNGYLKRI---GVDAYNLQHRGGVGVKGLTTY 550 Query: 529 --DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDH 584 DS + ++ ++F G+ Y I +P +G P + + + Sbjct: 551 TDDSISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPPGFRTNKGIPAVNLIKIDKDEKICA 610 Query: 585 MLMESDDQKLLMASDAGYGFVCTFNDLVARN---------RAGKALITLPENAHVMPPVV 635 ++ +D Q GY F CT N + R GK I EN V+ V+ Sbjct: 611 LISVNDYQN-------GYFFFCTKNGTIKRTSLSEFANILSIGKRAILFKEN-DVLFSVI 662 Query: 636 IEDASDMLLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARG 682 D + + AG ++ F + LS+ G IN+ E G Sbjct: 663 RTSGQDDIFIGSTAGFVVRFHEDTVRPLSRAAMGVLGINLNQCEFVNG 710 >UniRef50_B0MRF5 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MRF5_9FIRM Length = 878 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 232/691 (33%), Positives = 383/691 (55%), Gaps = 66/691 (9%) Query: 17 AYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHP 76 ++L YSM V++ RALP + DG+KPV RRI+Y M+E +S ++K A TVG+VLGKYHP Sbjct: 27 SFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSSKPYRKCAYTVGEVLGKYHP 86 Query: 77 HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSE 135 HGD++ Y+A+V +AQ FS RYPL+DG GN+G+ D DP AA RYTE+R++K + LL + Sbjct: 87 HGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPP--AAYRYTEARMAKIASELLKD 144 Query: 136 LGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIAL 195 + + T DW N+D L EP +LP + PN+L+NG+ GIAVGMAT+IPPHNL EV A +A Sbjct: 145 IKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMATNIPPHNLNEVCDAIVAR 204 Query: 196 IDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA----VWKKEDGA 251 +D P+ +++++L ++GPD+PT II + IR Y GRG + +R V + Sbjct: 205 MDNPECSIEEILQYIKGPDFPT-GGIIMGYSGIRSAYYTGRGKITLRGKAEIVEEGNHSR 263 Query: 252 VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQV 311 ++++ +P+ V+ +++LE MR+K++ + +LRDESD ++ R+V + + V+ V Sbjct: 264 IIVTEIPYMVNKSKLLETTGQLMRDKRIEGISNLRDESD-KDGMRIVYELKRD-VNAQVV 321 Query: 312 MNHLFATTDLEKSYRINLNMIGL-DGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVL 370 +N L++ T L+ + + + MI L +G P LLEIL ++ F++ + RR + L+K Sbjct: 322 LNKLYSFTQLQDT--VGVIMIALVNGEPKQLTLLEILDNYIAFQKQIITRRTAFDLKKAR 379 Query: 371 KRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRF-------------------- 407 +R HIL+G L+A NIDEVI I+R+ E K LM RF Sbjct: 380 ERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMERFKEDDLAKLLQRAMGENYKDV 439 Query: 408 ------GLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLL 461 GL+E QA+AI++++L L LE K+ E +E+ ++ + IL+S+ ++ ++ Sbjct: 440 HFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIMEKINDFLDILSSDERVKEII 499 Query: 462 KKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV----------- 510 K+E+ A + YGD+RR+ ++ + + D++P E + + +G++ Sbjct: 500 KEEITAIKEKYGDERRTAIEPV--SGEVDIEDLIPEEECVLTYTNIGYIKRQPVDVYNLQ 557 Query: 511 -RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQG 567 R KG G+ + D + ++ ++F+ + G Y + +P S + +G Sbjct: 558 KRGGKG----VSGMKQREEDFVEDMFISSTHDNILFITNYGNMYKLKCYEVPEGSKQSRG 613 Query: 568 EPLTGKLTLPPGATVDHMLMESD---DQKLLMASDAGYGFVCTFNDLVARNRAGKALITL 624 + L L G + M+ SD ++ + + G D + G ITL Sbjct: 614 TNIVNLLQLDEGERIAAMMKTSDFAENKYFICVTKYGKIKRTPLYDFRNVRKNGLRAITL 673 Query: 625 PENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 E + + E S +++A T G + F Sbjct: 674 AEGDEIAAAHLTEGDSSIIVA-THLGMAIHF 703 >UniRef50_A7HL65 DNA gyrase, A subunit n=4 Tax=Thermotogaceae RepID=A7HL65_FERNB Length = 823 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 243/687 (35%), Positives = 407/687 (59%), Gaps = 33/687 (4%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 +++ ER+ E + +YL+YSM VI+ RA+P + DGLKPVQRRI+Y+M ELGL + FK Sbjct: 19 NNVFERVLEDELVK-SYLSYSMSVIIGRAIPDVRDGLKPVQRRIIYSMYELGLFHNKPFK 77 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRY 120 K+AR VG+V+GKYHPHGDS+ YEA+V MAQP+ RY LV+GQGN+G+ D DP AAMRY Sbjct: 78 KTARIVGEVMGKYHPHGDSSIYEALVRMAQPWLMRYSLVEGQGNFGSIDRDPP--AAMRY 135 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RL K +E ++ ++ + T + NFDG+LQEP +LPA++PN+LLNG +GIAVGMAT+I Sbjct: 136 TEARLHKIAEEMVEDIDKQTVKMLDNFDGSLQEPDVLPAKVPNLLLNGASGIAVGMATNI 195 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG--S 238 P HNL +V A IA I ++++L+DI++GPD+PT I ++ IR++Y G+G + Sbjct: 196 PTHNLNDVVDATIAYIKNRDISVEELIDIIKGPDFPTGGI-IIGKSGIREMYITGKGGFT 254 Query: 239 VRMRAVWK--KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 +R +A K K+ +++I+ +P+ +S A +++QIA ++ +++P V DLRDESD + Sbjct: 255 IRGKAEIKHEKKKKSIIITEIPYGISKAELIKQIADYLQEEEIP-VKDLRDESDKDGLRV 313 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 ++ P V + ++N+L+ T+L+ + N +I D +P + NL +++ ++ R + Sbjct: 314 VIEFPED--VKEEVILNNLYQKTNLQTRFNANFLVIDGDKQPRLMNLKQLIEAYVKHRFE 371 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQ 413 VR+R Y ++ KR HI+EGL+ A ID V+ IIR+ + A L+ ++E Q Sbjct: 372 VVRKRTQYAYQQDSKRAHIVEGLIKASKAIDTVVSIIRSSKDSSEALSQLVDILQMSEEQ 431 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 A+A+L+++L L LE ++ E +L ++ + +L ++ K+ ++ +EL+ + YG Sbjct: 432 AKAVLDMRLGRLTNLETQNLQQEYRDLLVRLEKEKELLMNDDKVYEVIIEELEEIKKKYG 491 Query: 474 DDRRSPLQEREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDA-----------P 521 D R++ + + EE A + D++P++ + I L++ G++ K DIDA Sbjct: 492 DPRKTEITDLEETATKFDKKDLIPNKDIVITLTKKGFL---KLMDIDAFRTQRRNGKGVI 548 Query: 522 GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITL-PSARG-QGEPLTGKLTLPPG 579 G N D + K + +F S G+ Y I+ + + S RG +G+P+ + L G Sbjct: 549 GANLMEDDIISQIIYSKLHSKTLFFTSLGKVYEIENLDIEESNRGTKGKPINKYIKLENG 608 Query: 580 ATVDHMLMESDD-QKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIED 638 V M+ +D +L + G + D G IT + ++ + I Sbjct: 609 ERVLAMVDITDYVGELFFVTKKGVVKRTSLEDFKNITSKGIRAITFKDGDELVSVLRINS 668 Query: 639 ASDMLLAITQAGRMLMFPVSDLPQLSK 665 S+ +L T+ G + F + ++ + + Sbjct: 669 ESNTVLISTKLGMSIRFGIEEVRTMGR 695 >UniRef50_Q114B8 DNA topoisomerase IV subunit A n=4 Tax=Cyanobacteria RepID=Q114B8_TRIEI Length = 873 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 262/737 (35%), Positives = 389/737 (52%), Gaps = 96/737 (13%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 +LH + +YL Y+M VI+ RALP + DG KPV RRI+YAM ELGL F+K AR VG Sbjct: 16 SLHTEMQQSYLEYAMSVIVGRALPDVRDGQKPVHRRIIYAMHELGLTPDRPFRKCARVVG 75 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSK 127 DVLGKYHPHGD A Y+AMV M Q FS RYPL+DG GN+G+ D DP AAMRYTESRL+ Sbjct: 76 DVLGKYHPHGDQAVYDAMVRMIQNFSSRYPLLDGHGNFGSIDNDPA--AAMRYTESRLAS 133 Query: 128 Y-SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 +E LL+++ + D+ NFDG+ QEPK+LPA+LP +LLNG++GIAVGMAT++PPHNL Sbjct: 134 IGNEGLLTQISEAIVDFTNNFDGSQQEPKVLPAQLPFLLLNGSSGIAVGMATNVPPHNLG 193 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV-- 244 EV IALID P + +L +++ GPD+PT EI+++ I Y GRGS+ MR V Sbjct: 194 EVVDGLIALIDNPNISDQKLFELIPGPDFPTGGEIVSTDG-IIDTYTKGRGSIPMRGVAT 252 Query: 245 --------WKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 ++ A+V++ LP QV+ A +E+ A + K+ + DLRDESD Sbjct: 253 IEQVPTGRGRRTKTAIVVTELPFQVNKAGWIEKTADLVNAGKIEGIADLRDESDRSGIR- 311 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSY-RINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 V++ D V++HL+ TDL + I L ++ +G+P +L +L E+L FR Sbjct: 312 -VVIELKREADPSVVLHHLYRNTDLLSKFGAIMLALV--NGQPQQLSLRTLLQEFLNFRE 368 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTET 412 +T+ R + L+ R HI+ GLL A +D VI+I+RN + K + GL+E Sbjct: 369 ETLTRHYTHELQIAQARSHIVAGLLTALKELDRVIDILRNAPDGNTAKVSFQESLGLSEN 428 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QA+AIL + +R L LE+ K+ E +L + +L+ +L ++ LKKEL+ + Y Sbjct: 429 QADAILAMPMRRLTGLEKQKLEEEHEQLMGKIQELENLLGDRHQLLKALKKELRTLKRKY 488 Query: 473 GDDRRS------PLQEREEAKAMSEHDML------------------------------- 495 D RR+ L+ ++ ++S+ Sbjct: 489 NDPRRTRIIDQIKLKNADDFASISQQKKYLEAGNKEIDIKTKGRVIKSKNITVKSPILTL 548 Query: 496 -----PSEPVTIVLSQMGWVRS--AKG---HDIDAPG-LNYKAGDSFKA-AVKGKSNQPV 543 P+E V I S G+VR AKG + ID + + + F ++ +++ + Sbjct: 549 EAAPPPTEKVVIEFSHRGYVRRIPAKGFEKYKIDKKSHITMENSEDFTTNIIEATTDKTL 608 Query: 544 VFVDSTGRSYAIDPITLPSA--------RGQGEPLTGKLTLPPGATVD------------ 583 V + TG++Y + +PSA +G PL LPP AT + Sbjct: 609 VLLTRTGKAYPLKVNNIPSASNRSTIRNENKGVPLV--TLLPPSATKEITDARKEIIIGQ 666 Query: 584 HMLMESDDQK-LLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM 642 +L E+ + K L+M + G +DL G +I L E+ + + + + Sbjct: 667 FILNEAKENKDLIMLTQNGKIKRLCLSDLSDMRNRGVTVIKLKEDDELRYVSLGKTGEQV 726 Query: 643 LLAITQAGRMLMFPVSD 659 +LA T GR+L + D Sbjct: 727 VLA-TSGGRLLRLQIDD 742 >UniRef50_O67108 DNA gyrase subunit A n=2 Tax=Aquificaceae RepID=GYRA_AQUAE Length = 744 Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust. Identities = 264/744 (35%), Positives = 425/744 (57%), Gaps = 66/744 (8%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 + + E + AY++Y+M VI+ RA+P + DGLKPVQRRI+Y+M E+GL FKKSAR V Sbjct: 10 IPIEEEVKQAYIDYAMSVIVGRAIPDVRDGLKPVQRRILYSMYEMGLLPDKPFKKSARIV 69 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLS 126 G+ LGKYHPHGD A YEA+V MAQ F+ RYPL+ GQGN+G+ D DP A MRYTE++LS Sbjct: 70 GETLGKYHPHGDQAVYEALVRMAQDFTMRYPLIIGQGNFGSIDGDPA--AQMRYTEAKLS 127 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 + +L+++ + T D+ PNFD TL EP++LP++ PN+L NGT+GIAVG+AT IPPHNL Sbjct: 128 PLAVEMLTDIDKDTVDFQPNFDDTLMEPEVLPSKFPNLLCNGTSGIAVGLATSIPPHNLT 187 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA--- 243 EV A + L P+ ++D++++I++GPD+PT +I + A++++IY+ GRG ++++ Sbjct: 188 EVGNALVKLAQNPQISVDEIMEILKGPDFPT-GGVIENFAQVKEIYKTGRGIIKVKGKAH 246 Query: 244 VWKKEDG--AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 V K + G +VI+ +P+QV+ A ++++IA +RN K+ + D+RDE+D E +V + Sbjct: 247 VEKVQGGRERIVITEIPYQVNKAELIKKIADNVRNGKIKEISDIRDETDKEGIRIVVELK 306 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 R + ++V+ L+ T LEK + +NL ++ +D P + ++ +L E++ R + + RR Sbjct: 307 RDAK--GEEVLKKLYKYTPLEKGFPVNL-VVLIDKEPKLVDIKTLLREFIKHRLEVILRR 363 Query: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEAIL 418 Y L+KV RLHI+EGLL A ID++IE IR + E + LM FGL+E QA+A+L Sbjct: 364 SKYFLKKVQDRLHIVEGLLKAINFIDDIIERIRRSKDASEARNYLMEEFGLSEKQAQAVL 423 Query: 419 ELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRS 478 +L+L+ L LE K+ E+ EL ++ + + ++ASE + + +E + + YGD RR+ Sbjct: 424 DLRLQRLTSLEREKLLEEEKELREKIEYYKKLVASEGERIKVFIEETEELVKKYGDKRRT 483 Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDID-APGLNYKAGDSFKAAVKG 537 + +E K S +T+ + Q G + + ++ AP +N ++ Sbjct: 484 FIGGVKEVKEGS---------ITVAVLQDGSIIPVEELPLEKAPVVN---------ILRV 525 Query: 538 KSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMA 597 + + V + GR Y I S QG ++ L V + E +LL+A Sbjct: 526 PFTEGLFLVSNRGRVYWI----AGSQALQGSKVS--LKSREEKIVGAFIREKFGNRLLLA 579 Query: 598 SDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPV 657 + GY + + + G +I L E V+ D + +LL T+ GR+ F V Sbjct: 580 TKKGYVKKIPLAEFEYKAQ-GMPIIKLTEGDEVVSIASSVDETHILL-FTKKGRVARFSV 637 Query: 658 SDLPQLSKGKGNKIINIPSAEAARGEDGL--------AQLYVLPPQSTLTIHVGKRKI-K 708 ++P PS ARG G+ + L + + L + K ++ K Sbjct: 638 REVP-------------PSTPGARGVQGIKLEKNDETSGLRIWNGEPYLLVITAKGRVKK 684 Query: 709 LRPEELQKVTGERGRRGTLMRGLQ 732 + EE+ K RG +GT + G + Sbjct: 685 ISHEEIPKTN--RGVKGTEVSGTK 706 >UniRef50_C8PS29 DNA gyrase, A subunit n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PS29_9SPIO Length = 838 Score = 388 bits (997), Expect = e-106, Method: Compositional matrix adjust. Identities = 232/669 (34%), Positives = 379/669 (56%), Gaps = 31/669 (4%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 +++ + AY++YSM VI+ RALP + DGLKPV RRI+Y+M E L S +K A+ V Sbjct: 15 ISIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKNLRYSGPTRKCAKIV 74 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA-PDDPKSFAAMRYTESRLS 126 GDVLG YHPHGD++ Y+A+V + Q FS RYP++ QGN+G DP AA RYTE++++ Sbjct: 75 GDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDPP--AAYRYTEAKMA 132 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 + +E ++ ++ + T D++PNFD + QEP +LP + P +L NG++GIAVGMAT++PPHNLR Sbjct: 133 RLAESMVEDIKKDTVDFIPNFDDSTQEPTVLPGKFPFLLANGSSGIAVGMATNMPPHNLR 192 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA--- 243 E+AQA A ID P T+D+L ++GPD+PT II + IR+ ++ GRG + +R Sbjct: 193 EIAQAVSAYIDNPDITIDELAKYIKGPDFPT-GGIIFGKKGIRQAFKTGRGKILVRGRFN 251 Query: 244 --VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 V KK ++ + +P+QV+ ++ +I R K + + + DE+ RLVI Sbjct: 252 IEVDKKGKETIIFTEVPYQVNTTALVSKIGELAREKVIEGIAAVNDETSDRAGLRLVIEL 311 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYR-INLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360 + + V+N LF+ T L+ S+ INL ++G GRP L +++ ++ R++ V R Sbjct: 312 KRGAI-AKVVLNQLFSKTALQSSFGVINLALVG--GRPQTLTLKQLVGYFVAHRQEVVTR 368 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAEAI 417 R+ + L+K +R HIL L+VA NIDEVI+IIR + K ALM RF + QA+AI Sbjct: 369 RVRFDLKKAEERAHILRALIVAIDNIDEVIKIIRGSRDTASAKNALMERFSFDDVQAQAI 428 Query: 418 LELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRR 477 ++++L+ L LE +R E ELE + L+ +LA K+ L+K+E A+ +GDDRR Sbjct: 429 VDMQLKRLTSLEIEDLRKELQELEVLIEHLKDLLAHPEKILALIKQETNELAEKFGDDRR 488 Query: 478 SPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVR-----SAKGHDIDAPGLNYKA---GD 529 + + +E + ++ D++ E + +++S +G+++ + K + G N A D Sbjct: 489 TDIVS-DEVEEINIEDLIKKEQMVVLVSNLGYIKRVPVTAYKRQNRGGKGSNSAALVEDD 547 Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPG---ATVDH 584 ++ ++F+ + G++Y + +P A +G + L + T+ Sbjct: 548 FIDQIFTASTHDYIMFITNEGKAYWVKVHEIPEASRTSRGSHIKSLLAVSSDEEITTIVS 607 Query: 585 MLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLL 644 + S D LLMA+ G + G I L E ++ ++ D L+ Sbjct: 608 LKEFSSDTYLLMATAGGIVKKVQTDSFQNAKTRGIIAIKLDEGDKLVSA-ILTTGKDELM 666 Query: 645 AITQAGRML 653 +T+ G+ L Sbjct: 667 LVTRQGQAL 675 >UniRef50_Q0SRA9 DNA gyrase/topoisomerase IV, A subunit family protein n=37 Tax=Clostridium RepID=Q0SRA9_CLOPS Length = 979 Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust. Identities = 227/568 (39%), Positives = 331/568 (58%), Gaps = 23/568 (4%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 R+ L E + YL Y++ V DRALP + DGLKPV RRI+Y L + KSAR Sbjct: 16 RMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYYKSARI 75 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VGD+LGKYHPHGDS+ Y+AMV++AQ FS R PL+DG GNWG+ D + AAMRYTE+RLS Sbjct: 76 VGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDGA-AAMRYTEARLS 134 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 S +L ++ + D VPN+ + EPK+LPAR PN+L+NGT GIAVG++T+IPPHNLR Sbjct: 135 SISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIPPHNLR 194 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 EV +A ID + T +L++ ++GPD PT +I + + YE G G V +RA K Sbjct: 195 EVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLIGEKT-LLSAYETGEGKVTLRAKAK 253 Query: 247 K---EDG--AVVISALPHQVSGARVLEQIAAQMRNKK----LPMVDDLRDESDHENPTRL 297 E+G +VI+ P++ + AR+L+ I+ +K+ L + D+RDESD + Sbjct: 254 IETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTGIRAV 313 Query: 298 VIVPRSNRVDM-DQVMNHLFATTDLEKSYRINLNMIGL-DGRPAVKNLLEILSEWLVFRR 355 + ++ DM D+V+ +L+ TDL+ + I+ NM+ L DG+P L I+S ++ ++ Sbjct: 314 IEFKKAVDHDMADKVLKYLYKKTDLQGN--ISFNMVALADGKPETMGLKTIISHYVNHQK 371 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTET 412 D V RR LE KR HI+EG + A +DEVI IR K A L+ +FG T+ Sbjct: 372 DVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENLVLKFGFTDL 431 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QAEAILEL L L LE + E EL K+ L+ IL +E + ++K EL+ A+ Y Sbjct: 432 QAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKDELKEVAEVY 491 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-----RSAKGHDIDAPGLNYKA 527 GD+RR+ L E E + +++ +E V + LS G++ ++ ++D + Y+ Sbjct: 492 GDERRTALIEDESEAKIDLEELIVAEDVMVTLSNEGFIKKIPLKTYNRSNVDENEIEYRE 551 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAI 555 GD K +K + + G Y I Sbjct: 552 GDYLKFLIKSNTKDTLAIFTDKGTVYQI 579 >UniRef50_Q89AS3 DNA gyrase subunit A n=11 Tax=Proteobacteria RepID=GYRA_BUCBP Length = 847 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 242/701 (34%), Positives = 378/701 (53%), Gaps = 72/701 (10%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 +N+YL+Y+M VI+ RALP + DGLKPV RRI++AM L + + +KKSAR VGDV+GKY Sbjct: 18 KNSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKVLNNDWNKTYKKSARIVGDVIGKY 77 Query: 75 HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLS 134 HPHGD+A Y+A+V MAQPFS RY L+DGQGN+G+ D S AAMRYTE R+SK + LL+ Sbjct: 78 HPHGDTAVYDAIVRMAQPFSLRYVLIDGQGNFGSIDGD-SAAAMRYTEIRMSKIAYELLN 136 Query: 135 ELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIA 194 +L + T + N+DGT + P++LPA++PN+L+NG++GIAVGMAT+IPPHN++EV +A Sbjct: 137 DLDKNTVSFFSNYDGTEKIPEVLPAKIPNLLINGSSGIAVGMATNIPPHNIKEVINGCLA 196 Query: 195 LIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGAVVI 254 ID TL +L++ + GPD+PT A +I + I K Y+ G+G + +RA E Sbjct: 197 FIDDQNITLKKLMEHIPGPDFPT-AGLINGKRGIEKAYKTGKGKIYIRAKSIIEIQKKTK 255 Query: 255 SA------LPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308 LP+QV+ ARV++ IA ++ KK+ + LRDESD E ++ + + + ++ Sbjct: 256 KKSIIIYELPYQVNKARVIKGIANLVKEKKIEGITTLRDESDKEGMRIVIEIKKETKAEI 315 Query: 309 DQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEK 368 ++N L++ T LE S+ IN+ + + G+P V L EIL+ ++ RR + RR + L K Sbjct: 316 --ILNQLYSLTQLEISFGINMVAL-IHGQPKVMTLKEILNAFINHRRKIIMRRSLFELNK 372 Query: 369 VLKRLHILEGLLVAFLNIDEVIEIIRN--------------------------------- 395 + K++HILEGL+++ NID +I +I+ Sbjct: 373 IRKKIHILEGLIISLDNIDLIINLIKKSSTLEEAKNKLKTYHWYSKHAQYTQILKKNAHS 432 Query: 396 ----EDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451 + + +P +F LT Q +AILEL+L+ L LE K+ E +L K + L+ IL Sbjct: 433 LTPYDKKLRPIDTQKFFLTPEQIQAILELRLQKLTHLEHKKLISEYKQLFKTSNNLENIL 492 Query: 452 ASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVR 511 + + ++K EL +GD RR+ + ++ D++ E V I LS G+V+ Sbjct: 493 KNNNILTKIMKDELIKIRDNFGDKRRTKIN--VNYSDINTSDLINKENVVITLSYSGYVK 550 Query: 512 SAKGHDIDAPGLNYKAGDSFKAAVKGK------------SNQPVVFVDSTGRSYAIDPIT 559 +A K G K AVK K ++ ++ S G Y + Sbjct: 551 YQLLSSYEAQ----KRGGKGKLAVKTKEEDFIENLLVANTHDIILCFSSKGILYWMKVYQ 606 Query: 560 LPSA--RGQGEPLTGKLTLPPGATVDHMLMES---DDQKLLMASDAGYGFVCTFNDLVAR 614 LP A +G P+ L L + +L S D + MA+ G + + Sbjct: 607 LPEASRHARGRPIVNLLPLSSNERITAILPISEYKDSINIFMATSKGMVKKTSLYEFKKP 666 Query: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 G I L + ++ V + + ++ ++ T G+ + F Sbjct: 667 RTKGIIAINLKADDELI-GVSLTNGNNTIMLFTAQGKAVHF 706 >UniRef50_D2REE0 DNA gyrase, A subunit n=3 Tax=Archaeoglobaceae RepID=D2REE0_ARCPR Length = 738 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 211/495 (42%), Positives = 322/495 (65%), Gaps = 19/495 (3%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + D+AE L ++AYL+Y+M VI+ RALP + DGLKPVQRRI+YAM E+GL Sbjct: 6 IRDIAEEL------KDAYLDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGLTHDKPH 59 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 K AR VG VLG YHPHGD+ YEA+V MAQ FS RYPL+DGQGN+G+ D + AAMRY Sbjct: 60 VKCARVVGHVLGHYHPHGDAPVYEALVRMAQDFSMRYPLIDGQGNFGSIDGDEP-AAMRY 118 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE RL++ +E +L ++ + T D+ PNFD + QEP +LPA++PN+L+NG TGIAVGM T+I Sbjct: 119 TECRLTEIAEKMLEDIDKNTVDFQPNFDASKQEPVVLPAKIPNLLINGCTGIAVGMMTNI 178 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHN+REV IA I P ++++L++ ++GPD+PT +I R I + Y G+G + Sbjct: 179 PPHNIREVCDGIIAYIKNPNISIEELMNFIKGPDFPT-GGVIVGRDGIIEAYRTGKGKII 237 Query: 241 MRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 +R E+ ++I +P+ V+ A+++E+IA ++ KL + +RDESD E R+VI Sbjct: 238 LRGKVDVEEDKIIIREIPYMVNKAKLVEKIADLIKKDKL-LAKTVRDESDREG-IRVVIE 295 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGL-DGRPAVKNLLEILSEWLVFRRDTVR 359 + D + L+ T L+ ++ N+ M+ L + P + NL E+++ ++ RR+ VR Sbjct: 296 LKE---DPYSALKKLYDHTPLKVTF--NVVMLALVNNEPKLLNLKELIAHYVNHRREVVR 350 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEA 416 R+ Y L+K +R HI+EGL+ A +DEVI +I+ D K A LM +TE QAEA Sbjct: 351 RKAEYELKKAEERNHIVEGLIRAIEKLDEVINLIKQSDSTKNAKEGLMKLLRITEKQAEA 410 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDR 476 IL+L+L+ L +LE + E +EL+ D+L+ ILA ++++ ++ +EL+ + +GD+R Sbjct: 411 ILQLRLQMLTRLEYESLMKEFNELKGRIDELKSILADPKRVDEIIVEELREVKRKFGDNR 470 Query: 477 RSPLQEREEAKAMSE 491 R+ + ++E K + E Sbjct: 471 RTEIIDKEILKEVVE 485 >UniRef50_P48371 DNA gyrase subunit A n=482 Tax=cellular organisms RepID=GYRA_NEIGO Length = 916 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 248/709 (34%), Positives = 389/709 (54%), Gaps = 71/709 (10%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 ++L + +YL+Y+M VI+ RALP + DGLKPV RR++YAM EL N +A +KKSAR V Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 GDV+GKYHPHGDSA Y+ +V MAQ F+ RY L+DGQGN+G+ D + AAMRYTE R++K Sbjct: 79 GDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAA-AAMRYTEIRMAK 137 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 S +L+++ + T ++ PN+DG+ EP +LP R P +L+NG++GIAVGMAT+IPPHNL + Sbjct: 138 ISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLTD 197 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA---- 243 A + L+D+PKT +D+L+DI+Q PD+PT A I +R+ Y+ GRG V MR Sbjct: 198 TINACLRLLDEPKTEIDELIDIIQAPDFPTGA-TIYGLGGVREGYKTGRGRVVMRGKTHI 256 Query: 244 --VWKK-EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 + K E +VI +P+QV+ A+++E+I +R K L + +LRDESD ++ R+VI Sbjct: 257 EPIGKNGERERIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESD-KSGMRVVIE 315 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360 + N + + V+N L+ T L+ S+ IN+ ++ +DG+P + NL +ILSE+L RR+ V R Sbjct: 316 LKRNE-NAEVVLNQLYKLTPLQDSFGINM-VVLVDGQPRLLNLKQILSEFLRHRREVVTR 373 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSR----------- 406 R +RL+K HI E VA NIDE+I++I+ N E K L++R Sbjct: 374 RTLFRLKKARHEGHIAERKAVALSNIDEIIKLIKESPNAAEAKEKLLARPWASSLVEEML 433 Query: 407 -------------------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELE 441 + L+E QA+AIL + LR+L L++ +I L Sbjct: 434 TRSGLDLEMMRPEGLVANIGLKKQGYYLSEIQADAILRMSLRNLTGLDQKEIIESYKNLM 493 Query: 442 KERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVT 501 + IL+ ++ +++ EL+ YGD+RRS + +++ D++P + Sbjct: 494 GKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEINPF--GGDIADEDLIPQREMV 551 Query: 502 IVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDST----------GR 551 + L+ G++++ D A + + AA K + +FV +T G+ Sbjct: 552 VTLTHGGYIKTQPTTDYQAQRRGGRGKQA--AATKDEDFIETLFVANTHDYLMCFTNLGK 609 Query: 552 SYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLMES---DDQKLLMASDAGYGFVC 606 + I LP +G P+ + L G V +L +DQ + A+ G Sbjct: 610 CHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKV 669 Query: 607 TFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 + G I L E +++ A D++L + G+ + F Sbjct: 670 QLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIML-FSNLGKAIRF 717 >UniRef50_Q1RID9 DNA gyrase subunit A n=218 Tax=Bacteria RepID=GYRA_RICBR Length = 905 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 242/698 (34%), Positives = 388/698 (55%), Gaps = 67/698 (9%) Query: 17 AYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHP 76 +YL+Y+M VI+ RA+P + DGLKPV RRI+Y+M E G +A+ ++KSAR VGDV+GKYHP Sbjct: 21 SYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHANRAYRKSARIVGDVMGKYHP 80 Query: 77 HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSEL 136 HGDSA Y+++V MAQ FS R PLVDGQGN+G+ D + AAMRYTESR++K + L+ ++ Sbjct: 81 HGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSLDGDAA-AAMRYTESRMAKVAHKLIEDI 139 Query: 137 GQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALI 196 + T + PN+DG+ +EP +LP+ PN+L+NG+ GIAVGMAT+IPPHNL EV A + Sbjct: 140 DKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSGGIAVGMATNIPPHNLGEVIDACCLYV 199 Query: 197 DQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----GA 251 D + LL++V+GPD+PT II I+ Y GRGS+ +R + E+ A Sbjct: 200 DNNDIEILDLLEVVKGPDFPTSG-IILGVNGIKSAYLTGRGSIAIRGRAEIENLGNGRQA 258 Query: 252 VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQV 311 ++I+ +P+ V+ AR++E+IA ++ K++ + DLRDES ++N R+ I + + V + V Sbjct: 259 IIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDES-NKNGIRIYIELKKDIV-AEVV 316 Query: 312 MNHLFATTDLEKSYRINLNMIGL-DGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVL 370 +N +++ T L+ S+ + M+ L DG P V NL E+++ ++ FR + R Y L K Sbjct: 317 LNQIYSCTQLQTSF--GVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTIYLLNKAR 374 Query: 371 KRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR--------------------- 406 + HIL GL +A NIDE+I II+ +P A LM+R Sbjct: 375 DKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMARSWDALNILPLVKLVDDKAMLN 434 Query: 407 ----FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLK 462 TE QA+AILE++L+ L +E+ K+ + L E + IL S ++ +LK Sbjct: 435 EEGKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLNILGSRERLLEILK 494 Query: 463 KELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV------------ 510 +EL + + R + ++ E + + D++ E + + ++ G++ Sbjct: 495 EELIKVKEEFATPRLTSIEFGEFDQDI--EDLIQREEMVVTVTLGGYIKRVPLSSYRAQK 552 Query: 511 RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGE 568 R KG GL+ + D G ++ P++F + G+ Y++ LP + +G+G Sbjct: 553 RGGKGR----SGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQGKGR 608 Query: 569 PLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALI 622 P+ L L + +++ E D+ ++ A+ G D GK I Sbjct: 609 PMVNILPLKGDEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQSNGKIAI 668 Query: 623 TLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDL 660 L E+ ++ ++ +LLA T++G+ L FPV L Sbjct: 669 RLDEDDKLIDVKPCKEDEHILLA-TKSGKALRFPVESL 705 >UniRef50_Q9HJB6 DNA gyrase, subunit A (GyrA) related protein n=5 Tax=Thermoplasmatales RepID=Q9HJB6_THEAC Length = 796 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 245/712 (34%), Positives = 397/712 (55%), Gaps = 34/712 (4%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + E+ A+ +YL Y+M VI+ RA+P + DGLKPVQRR++Y+M ELG+ +KK Sbjct: 3 IMEKRAVEVEIRKSYLEYAMSVIVSRAIPDVRDGLKPVQRRVLYSMRELGVTHDKPYKKC 62 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VG+ +GKYHPHGD A Y+A+V MAQ FS RYPLVDGQGN+G+ D S AAMRYTE+ Sbjct: 63 ARIVGETMGKYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSI-DGDSPAAMRYTEA 121 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 RL++ +E ++ ++ + T + NFDGTL EP+ LP+++PN+L+NG++GIAVGMAT++ PH Sbjct: 122 RLTQIAEDMMDDIDENTVPFRLNFDGTLSEPEYLPSKIPNLLINGSSGIAVGMATNMVPH 181 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL E+ A + +D + +D LL V+GPD+P I+ ++ + Y GRG V ++ Sbjct: 182 NLTEICDAILYEVDHRDSPVDDLLKYVKGPDFPG-GGIVFYGKDLIEAYRTGRGKVIVQG 240 Query: 244 -VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 V ED ++I ++P+ V+ A +++ IA +N+ + + D++DESD N R+VI R Sbjct: 241 EVDATEDRRLIIKSIPYGVNKADLVQSIADLAKNEVIKDITDIKDESDR-NGIRIVIKVR 299 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRL 362 + + V+N L+ T LE S I +N++ + +P + NL +++ ++ R D + RR Sbjct: 300 DDDIK-PLVLNQLYEHTALESSIGI-INLVLVGNQPKLMNLKDLIDSFIDHRLDVILRRS 357 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQAEAILE 419 +RL++ +RL +L G+L A +ID V+EI+++ DE L + F L + Q +AILE Sbjct: 358 QFRLDRKKERLDVLTGILTAVEHIDRVVEILKSSKDADEASSKLRNEFDLNDRQIKAILE 417 Query: 420 LKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSP 479 ++L+ L E+ +R E ++++ E L+ I+ SE + + KKE+ + YGD RRS Sbjct: 418 MRLQRLVNTEQESVRSEIAQIQAEIKDLEEIILSEDRRIDEFKKEITEIQKKYGDKRRSR 477 Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDA-----PGLN--YKAGDSFK 532 ++ R + E D++P+E I+LS G V+ + + + G+N K DS K Sbjct: 478 IKFRGITERTME-DLIPNEESLIMLSYGGLVKRVQADEYRSQRRGGKGVNTSMKTSDSIK 536 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHMLMESD 590 + + S+ V + +TGR + +P S G L L G V +M++ Sbjct: 537 SMIHCFSHDTVYYFTNTGRVFKSKAYEIPKKSRTSLGVSAAAFLKLAQGERVTE-IMKAP 595 Query: 591 DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAG 650 +K GY + D + A + + + + +ED +++ AG Sbjct: 596 PEK-------GYYLILVTRDGSVKKTAADPV--FDSKSSGLKIITLEDDDELVSVSYTAG 646 Query: 651 RMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHV 702 MF +S SKGK + E R G+ + + + LT V Sbjct: 647 DKNMFVLS-----SKGKASVFNTSEIRETGRTSMGVRSMRLNEGDTILTAFV 693 >UniRef50_B1ZTK3 DNA gyrase, A subunit n=3 Tax=Verrucomicrobia RepID=B1ZTK3_OPITP Length = 830 Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust. Identities = 255/677 (37%), Positives = 382/677 (56%), Gaps = 39/677 (5%) Query: 1 MSDMAERLA---LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 57 M +E+L+ + + + AY++YSM VI+ RALP DGLKPVQRR++YAM GL + Sbjct: 1 MYTASEKLSSANITDIMQTAYIDYSMSVIISRALPDARDGLKPVQRRVLYAMLREGLLHN 60 Query: 58 AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFA 116 F K A VG+VL YHPHGDS+ Y+ +V MAQP+ RYPL+D QGN+G+ D DP A Sbjct: 61 RAFDKCAGVVGEVLKNYHPHGDSSVYDTLVRMAQPWVMRYPLIDPQGNFGSVDGDPA--A 118 Query: 117 AMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGM 176 A RYTE RL+ +E LL ++ + T D+ PN+ + EP +LPA LPN+L+NG+TGIAVGM Sbjct: 119 AYRYTECRLNAIAEDLLRDIEEDTVDFAPNYKESTTEPTVLPAALPNLLMNGSTGIAVGM 178 Query: 177 ATDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR 236 T+IPPHNL E+ A A+ID P+ ++D+L IVQGPD+PT +I R I + G+ Sbjct: 179 TTNIPPHNLAEIIDATCAIIDNPRISVDELCTIVQGPDFPT-GGVIAGREGILSYLKTGK 237 Query: 237 GSVRMRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDH 291 G VR R E+ +V++ +P+ V+ A ++ +IA + +K++ + DLRDESD Sbjct: 238 GIVRTRGKAHTEEMKGGMEQIVVTEIPYNVNRATLVTRIAELVGDKQIDGIRDLRDESD- 296 Query: 292 ENPTRLVI-VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLD-GRPAVKNLLEILSE 349 EN TR+VI + R + + V+N LF T LE S+ + L + LD RP N+ E++ Sbjct: 297 EN-TRIVIELKRGEQSKV--VINQLFQKTALESSFGVTL--LALDKKRPKQMNIKELIEC 351 Query: 350 WLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSR 406 ++ RR+ V RR +RL++ R HILEG ++A N+D+ ++IIR N +E K LM++ Sbjct: 352 YIEHRREVVTRRTRFRLKQAEDRAHILEGYIIALDNLDDFVKIIRASQNREEAKVRLMAK 411 Query: 407 FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ 466 + L+E Q +AILEL+L L LE KI E EL K ++L+GIL SE K+ L+KKEL Sbjct: 412 YPLSERQTDAILELRLYQLTGLERGKIEAEYLELMKLIEELRGILESEPKLLALIKKELA 471 Query: 467 ADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV--------RSAKGHDI 518 + Y RR+ + A D++P+E I +S +G++ RS + Sbjct: 472 EMKEKYTSPRRTEII--AAAGEFRMEDVIPNEGCVITVSHLGFIKRTPVAEYRSQRRGGK 529 Query: 519 DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTL 576 G D ++ ++F S G+ +A +P +G+ ++ L L Sbjct: 530 GVIGAETYEEDFVANLFTASTHDYILFFTSIGQCHAKKVYDIPEGTRASKGKSVSSFLRL 589 Query: 577 PPGATVDHMLMESD---DQKLLMASDAGYGFVCTFNDLVARNRAGKAL-ITLPENAHVMP 632 G + ML D D+ L+ A+ G +D R G + I L E V+ Sbjct: 590 AEGEKIAAMLCVKDFAEDRYLVTATKRGIIKKSALSDYANATREGGLIGINLQEADSVIG 649 Query: 633 PVVIEDASDMLLAITQA 649 V+ ++++L Q Sbjct: 650 TVLTTGENELILVSHQG 666 >UniRef50_C5B4N9 DNA gyrase subunit A n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4N9_METEA Length = 894 Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust. Identities = 250/731 (34%), Positives = 394/731 (53%), Gaps = 71/731 (9%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 +R + E E++YL+Y M + RALP + DG+KPV RRI+++M+E A K KSA+ Sbjct: 19 KRTSFTEEMEDSYLSYMMSTVTARALPDVRDGMKPVHRRIMFSMAESNFTADRKHVKSAK 78 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124 VGDV+G+YHPHGD+A Y+AMV M Q +S RYPL+D QGN+G+ D DP AAMRYTESR Sbjct: 79 VVGDVMGQYHPHGDTAIYDAMVRMGQHWSLRYPLIDPQGNFGSIDNDPP--AAMRYTESR 136 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 L + + L+++LG+G D+ PN+D + +EP +LPAR PN+L+NG GIAVGMAT+IPPH+ Sbjct: 137 LERLAGHLVADLGEGVVDFRPNYDSSCKEPVVLPARFPNLLVNGGIGIAVGMATNIPPHH 196 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 L E +A + + P TLD+++ ++ GPD PT +I R+ IR+ + GRG++R+ V Sbjct: 197 LGETIEACLLRLANPAVTLDEIMRVMPGPDLPT-GGVIHGRSGIRQAFATGRGAIRVSGV 255 Query: 245 WKKEDGA-----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 E+G +VI+ LP+ V A +E++A + KK+ + D+RDES + R+VI Sbjct: 256 ASVEEGKAGRRRIVIAQLPYLVVKAEFVEKLAELVEEKKIEGISDIRDESSDKAGIRIVI 315 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 R + D V+N L TD + +N+ + GRP +L++L E++ FRR+ VR Sbjct: 316 DVRKD-ADPAVVLNRLREKTDFVTNLNVNMTCLDSRGRPRTMGVLQVLGEFVDFRREVVR 374 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMS----------- 405 RR +RLEK + LH GL A L IDE++ +IR+ DE + AL++ Sbjct: 375 RRTMHRLEKTREDLHRQIGLYAATLRIDEIVALIRSSHDIDEARAALLALDFDTSGEFAQ 434 Query: 406 -------------RFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILA 452 F L++ Q AILE++L L LE KI EL E IL Sbjct: 435 LLFEVDPDVPVGDTFRLSDAQVRAILEMRLSRLTGLERDKIAERARELSVEIGGHLEILN 494 Query: 453 SERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS 512 + ++ ++++EL+ A+ D RR+ +++ A+S+ D++ + + + ++ G+V Sbjct: 495 VKAVLDGVVRRELEEIKAAFPDGRRTAIED-SALDALSDEDLVELKDIVVTVTAGGYV-- 551 Query: 513 AKGHDIDAPGLNYKAGDS-----FKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RG 565 K D+ A KA D + + P++F + G ++A LP A Sbjct: 552 -KRTDLPAYMGRQKAADEAVEDPVATTIVCTTKTPLLFFTNRGLAHAEVAHKLPEAAPNV 610 Query: 566 QGEPLTGKLTLPPGATVDHMLMESDDQ------KLLMASDAGYGFVCTFNDLVARNRAGK 619 +G L L L TV ++ DD+ L+ +D G +D N+ GK Sbjct: 611 RGRALVNFLELKAEETVQAIVALPDDRAAIEKLSLIFVTDFGTIRRNDASDFARVNKGGK 670 Query: 620 ALITLPE-----NAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDL-----------PQL 663 I L + ++ +++ D+ LA ++ G F V+DL + Sbjct: 671 VAIKLEDENGEPQGKLVSVLLVSPEDDVALA-SRDGLCCRFNVADLRVMKSRDSVGVAGI 729 Query: 664 SKGKGNKIINI 674 S G+ +K+I++ Sbjct: 730 SLGRKDKVISV 740 >UniRef50_Q2JY71 Type II DNA topoisomerase, A subunit n=10 Tax=Cyanobacteria RepID=Q2JY71_SYNJA Length = 849 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 255/729 (34%), Positives = 392/729 (53%), Gaps = 62/729 (8%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 + +YL Y+M VI+ RALP + DGLKPV RRI+YAM ELGL ++K AR VGDVLGKY Sbjct: 33 QRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCARVVGDVLGKY 92 Query: 75 HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSEL-LL 133 HPHGD A Y+A+V MAQ FS RYPLV G GN+G+ DD AAMRYTE RL++ S LL Sbjct: 93 HPHGDQAVYDALVRMAQDFSSRYPLVAGHGNFGSVDDDPP-AAMRYTECRLAELSHTALL 151 Query: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193 + + D++PNFDG+ EP +LPARLP +LLNG+ GIAVGMAT+IPPHNL EV + Sbjct: 152 QGISEAIVDFMPNFDGSQAEPTVLPARLPILLLNGSAGIAVGMATNIPPHNLGEVVDGLL 211 Query: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED---- 249 ALID+P + ++LL + GPD+PT +I+ + IR+ Y GRGS+ +R V + E+ Sbjct: 212 ALIDEPDLSPEELLRWIPGPDFPTGGQIVDGQG-IREAYLTGRGSITLRGVARFEEIQPG 270 Query: 250 ------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 A++IS P+QV+ A LE++A + +L + DLRDESD V+V Sbjct: 271 RGRHRRPALIISEFPYQVNKAAWLEKVAELVAQDRLSGIADLRDESDRSG--MRVVVELK 328 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLN 363 + V+ L+ T L+ ++ + L + ++G+P +L +IL +L FR T++R Sbjct: 329 REANPQAVLQQLYKLTPLQSTFGVILLAL-VEGKPQQLSLKQILQHFLQFREATLKRMFR 387 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAEAILEL 420 L++V ++ + G+++A +++ VI+++R + K L +R G T QAE IL + Sbjct: 388 AELQQVQRKAEEVAGMVLALADLEGVIDLLRQAPDSATAKAQLQTRLGCTSQQAETILAM 447 Query: 421 KLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPL 480 LR L LE ++ EQ+EL+ +LQG+L RK+ N LKKEL+ + + D RR+ + Sbjct: 448 PLRRLTTLERERLYQEQAELQARIAELQGLLQDRRKLLNYLKKELRHLKKTFADPRRTQI 507 Query: 481 QEREEAKAMSEHDMLPS------EPVTIVLSQMGWVRSAKGHDIDAPGLNYKAG------ 528 E +A E +P + L++ G+VR + PG ++ Sbjct: 508 LSASELEA--EAAQIPGGEAGEDSRFLLQLTRKGYVRR-----LPLPGPRSRSNPAQREL 560 Query: 529 --DSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPSARG--------QGEPLTGKL 574 D+ + Q ++ + ++GR++ + P++ S+RG EP+ Sbjct: 561 GEDTLVSLECVTPEQAILVLTASGRAFTVPIEGIPLSTGSSRGVPLVTLLPNPEPIVAAF 620 Query: 575 TLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPV 634 L P V + L++ S G +LV ++ G A++ L E + Sbjct: 621 PLDP-VRVSGAEHSPGEASLVVLSRQGRIKRVALAELVGLSQRGAAVLKLKEGDELGWAA 679 Query: 635 VI---EDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYV 691 + ++LA T GR+L +P + G + P+ R E + + + Sbjct: 680 LWHPGHQGYSVVLA-TSGGRVLRLDAEQIPLM----GRAAMGSPALRLGRTEQ-IVGMAL 733 Query: 692 LPPQSTLTI 700 LPPQ L + Sbjct: 734 LPPQGILVL 742 >UniRef50_B9ZEE7 DNA gyrase, A subunit n=1 Tax=Natrialba magadii ATCC 43099 RepID=B9ZEE7_NATMA Length = 861 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 248/704 (35%), Positives = 393/704 (55%), Gaps = 41/704 (5%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 E + + + E +Y++Y+M VI RALP + DGLKPV RRI+YAM E+G+ + + +KS+ Sbjct: 32 ENVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVTSRSSHRKSSS 91 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124 VG+ +G YHPHGDSA Y+ +V MAQ FS RYPLVDGQGN+G+ D DP AA RYTE+R Sbjct: 92 IVGETMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGSMDGDPA--AAPRYTEAR 149 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 ++ SE LL ++ + T D+ N+D LQEP +LP+ PN+L+NG++GIAVGM+T+IPPHN Sbjct: 150 MAAVSEELLEDIDKDTVDFSSNYDDRLQEPDVLPSAFPNLLVNGSSGIAVGMSTNIPPHN 209 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA- 243 L EV A I LID P T++ L++ V+GPD+PT A I+ R I Y+ GRG +R+RA Sbjct: 210 LGEVIDATIELIDDPDATVEDLMEHVKGPDFPTGANIV-GRDAIYSAYKTGRGRIRVRAE 268 Query: 244 ----VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 WK +VI+ LP+Q + AR++E+IA + + + DLRDESD + +V Sbjct: 269 FEVEEWKNGRERIVITELPYQENKARLVERIAEDVNEGDIEGISDLRDESDRDGVRIVVE 328 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 R V++ V N L LEK++ + +N+ +DG+P V +L E L E++ RR+ VR Sbjct: 329 CKRGANVEV--VKNKLLENH-LEKTFGV-INLALVDGQPQVLSLKETLEEYIAHRREVVR 384 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQAEA 416 RR Y L + R HILEG L A N ++V+++IRN D+ K AL + + QA Sbjct: 385 RRSEYDLAEAEDRAHILEGRLKAVENAEDVVDLIRNSETRDDAKAALQEAYDFSAEQATH 444 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDR 476 I+ ++L L +E +I E +++ E ++L IL SE+++ ++K EL Y DDR Sbjct: 445 IVRMQLGSLTSMEAAEIEDEYEDVQAEIERLTSILESEQELLAVIKDELSEIKDEYDDDR 504 Query: 477 RSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV------------RSAKGHDIDAPGLN 524 R+ + E+ ++ D++P E V +V+++ +V R KG G + Sbjct: 505 RTSII--EDQGTVTHEDLIPEEEVFVVMTEDDYVKRMPISQFDPQGRGGKG----IIGAD 558 Query: 525 YKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATV 582 K D + ++ ++ + G+ Y + +P +G+ L L PG + Sbjct: 559 VKEDDRVATVFRANTHDYLLCFTNQGKVYQLKTYEIPEMGRTARGKSAVNILDLDPGEDI 618 Query: 583 DHMLMES---DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDA 639 ++ DD+ + MA+ GY ++ G L E ++ V + Sbjct: 619 TAIVDTDAFGDDEFVTMATRHGYVKRTAGSEFDNIRSTGIIAADLQEGDELVDVEVTDGT 678 Query: 640 SDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARG 682 D+++A ++ G + F ++ + + +G I++ +A G Sbjct: 679 KDLVIA-SENGMTIRFDEDEVRAMGRNARGVNGIDLQGDDAVAG 721 >UniRef50_A9NF72 DNA topoisomerase IV, subunit A n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NF72_ACHLI Length = 857 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 264/751 (35%), Positives = 403/751 (53%), Gaps = 39/751 (5%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 E++ L + + + YS Y+I DRALP DGLKPVQRRI+YAM ++GL + +KKSAR Sbjct: 17 EKVLLEDIMSSRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMGQMGLAFNKSYKKSAR 76 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 G+V+GKYHPHGDS+ YEAMV M+Q F R PLVD GN G+ D S AAMRYTE+RL Sbjct: 77 IAGEVMGKYHPHGDSSIYEAMVRMSQDFKMRVPLVDMHGNNGSIDGD-SAAAMRYTEARL 135 Query: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 SK +E LL ++ + T ++VPNFD QEP +LPAR PN+L+NG GI+ G AT IPPHNL Sbjct: 136 SKEAEFLLKDIDKRTVNFVPNFDDEEQEPTVLPARFPNLLVNGAMGISAGYATKIPPHNL 195 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245 EV A IALID P T D++L ++GPD+PT I+ +A I++ G G + +RA Sbjct: 196 NEVIDATIALIDNPNITNDEILKYIKGPDFPT-GGIVQGKAGIKEALTTGSGKIIIRAKM 254 Query: 246 KKEDGA-----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 E+ + +VI+ +P++V+ A ++ QI N + + ++RDE+D E R+ I Sbjct: 255 NVEEMSKSQDRIVITEIPYEVNKADLVRQIDNLRINNNIEDILEIRDETDQEG-LRIAID 313 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIG-LDGRPAVKNLLEILSEWLVFRRDTVR 359 + D + N+L ++DL+ +Y N NM+ L RP + E+L +L +++ V Sbjct: 314 LKKG-ADAQFIQNYLLKSSDLQVNY--NYNMVAILKHRPVLSGAFELLKVYLEHQKEVVT 370 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEA 416 R NY LE+ KR HI++GL+ + EVIE IR N+ + K + RFG +E QAEA Sbjct: 371 NRSNYELERATKRNHIVDGLIQMTSVVSEVIEEIRKSKNKADSKENIQKRFGFSELQAEA 430 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDR 476 I+ L+L L+ + + E+ L KE +L+ IL++ER + +K ELQ R Sbjct: 431 IVMLQLYRLSTTDIQALLDEKDTLYKEITRLEQILSNERILLKTIKSELQEVQTLLPSPR 490 Query: 477 RSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG-LNYKAGDSFKAAV 535 R+ L+ E + E D++ E + +++ G+V+ A + A + K D+ Sbjct: 491 RTELEAEIETIKIDEKDLISDEQTYVAITKDGYVKRASLRSVVASKEVGLKENDAMLYEE 550 Query: 536 KGKSNQPVVFVDSTGRSYAIDP---ITLPSARGQGEPLTGKLTLPPGATVDHMLMESD-- 590 + + ++ + G+ Y P I R G + + G T+ +L SD Sbjct: 551 ELNTLDTLLLFTNLGQ-YIYLPVYKIEEQKWRDLGVYINNIVPTSKGETIIRVLKVSDFS 609 Query: 591 -DQKLLMASDAGYGFVCTFNDL-VAR-NRAGKALITLPENAHVMPPVVIEDASDMLLAIT 647 DQK+L+ + G D V+R NR +A+ L ++ ++ V + D ++AI+ Sbjct: 610 IDQKILLTTKQGQMKQVNLADFEVSRYNRPLRAM-KLSKDDELVS--VDYNQLDNIVAIS 666 Query: 648 QAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKI 707 + G +L F +LP G + S A G++ Y + I Sbjct: 667 KHGYVLRFDTEELPVYGLTAG----GVKSMALAEGDEVAVAFYAKESDDFYFLTSRGHII 722 Query: 708 KLRPEELQKVTGERGRRGTLMRGLQRIDRVE 738 K EL K R RRG ++ +DR++ Sbjct: 723 KDTVLELPKYA--RNRRGIIL-----VDRIK 746 >UniRef50_A8G5D2 DNA gyrase/topoisomerase IV, subunit A n=16 Tax=Cyanobacteria RepID=A8G5D2_PROM2 Length = 865 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 227/613 (37%), Positives = 362/613 (59%), Gaps = 35/613 (5%) Query: 17 AYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHP 76 +YL Y+M VI+ RALP DGLKPV RRI+YAM ELGL + ++K AR VG+VLGKYHP Sbjct: 31 SYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSGRPYRKCARVVGEVLGKYHP 90 Query: 77 HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYS-ELLLS 134 HGD+A Y+A+V MAQ FS R PL+DG GN+G+ D DP AAMRYTESRL + E LL Sbjct: 91 HGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPP--AAMRYTESRLQSLTDESLLE 148 Query: 135 ELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIA 194 ++ T D+ NFDG+ QEP +LPAR+P +LLNG++GIAVGMAT+IPPHNL E+ + Sbjct: 149 DIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNIPPHNLGELINGLKS 208 Query: 195 LIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV---------W 245 +I P +L +I++GPD+PT +I+ R IR+ ++ G+GS+ MR V Sbjct: 209 IIKNPSIEDRELFEIIKGPDFPTGGQIL-GREGIRETFKTGKGSITMRGVANIEQIKSIG 267 Query: 246 KKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNR 305 + E AV+I+ LP Q + A ++E+IA + KKL + D+RDESD + ++ + R + Sbjct: 268 RAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGISDIRDESDRDGMRIVIELKRDSY 327 Query: 306 VDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYR 365 + V+N+LF T L+ ++ N+ + + G P +L ++L +L FR +T+RRR + Sbjct: 328 PQV--VLNNLFKLTPLQNNFSANILAL-VKGEPTTLSLRKMLDVFLDFRVETIRRRTAFL 384 Query: 366 LEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEAILELKL 422 L+K +R HI++GLL+A +DE+I +IR+ + A L + L+ Q++AIL+++L Sbjct: 385 LKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSISAREKLQNEHKLSSIQSDAILQMQL 444 Query: 423 RHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQE 482 R L LE KI+ E +EL ++ + Q IL S+ ++ ++ +EL + R++ + + Sbjct: 445 RRLTALEADKIKEEHNELTRKINLYQQILNSKERIFEIILEELNQIDGKFSSPRKTEILD 504 Query: 483 REEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDA--------PGLNYKAGDSFKAA 534 + + D++ ++ ++L++ G+++ +D ++ G K D K Sbjct: 505 L--GGGLDDIDLIANDRSVVLLTEAGYLKRMPVNDFESTSRGSRGKAGTKTKEDDDVKLF 562 Query: 535 VKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHMLMES--- 589 + + ++ G +YA+ +P S +G P L +P + ++ Sbjct: 563 ISCNDHDTLLLFSDRGVAYALPAYRVPMSSRTAKGTPSVQLLPIPREEKITSLVAVDSFV 622 Query: 590 DDQKLLMASDAGY 602 DD+ LLM + AG+ Sbjct: 623 DDRYLLMLTKAGF 635 >UniRef50_P48354 DNA gyrase subunit A n=46 Tax=Bacteria RepID=GYRA_MYCS2 Length = 842 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 237/691 (34%), Positives = 387/691 (56%), Gaps = 50/691 (7%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 D E + + + + +Y++Y+M VI+ RALP + DGLKPV RR++YAM + G K Sbjct: 14 DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAK 73 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP-DDPKSFAAMRYT 121 SAR+V + +G YHPHGD++ Y+ +V MAQP+S RYPLVDGQGN+G+P +DP AAMRYT Sbjct: 74 SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP--AAMRYT 131 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+RL+ + +L E+ + T D++PN+DG +QEP +LP+R PN+L NG+ GIAVGMAT+IP Sbjct: 132 EARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIP 191 Query: 182 PHNLREVAQAAIALIDQ----PKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 PHNL E+A+A ++ + T + +++ V+GPD+PT I+ ++ I Y+ GRG Sbjct: 192 PHNLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIVGTQG-IEDTYKTGRG 250 Query: 238 SVRMRAVWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHE 292 S++MR V + E+ ++VI+ LP+QV+ + IA Q+R+ KL + ++ D+S Sbjct: 251 SIKMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDR 310 Query: 293 NPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLV 352 R+V+ + + V V+N+L+ T L+ S+ N+ I +DG P L +++ ++ Sbjct: 311 VGLRIVVELKRDAV-AKVVLNNLYKHTQLQTSFGANMLSI-VDGVPRTLRLDQLIRLYVD 368 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGL 409 + D + RR YRL K +R HIL GL+ A +DEVI +IR D + L+ + Sbjct: 369 HQLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARAGLIELLDI 428 Query: 410 TETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADA 469 + QA+AIL+++LR LA LE KI + +++E E L+ ILA + +++ EL+ Sbjct: 429 DDIQAQAILDMQLRRLAALERQKIVDDLAKIEAEIADLEDILAKPERQRGIVRDELKEIV 488 Query: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAK----------GHDID 519 +GD RR+ + + +S+ D++ E V + +++ G+ + K G + Sbjct: 489 DKHGDARRTRIVPAD--GEVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGGKGVQ 546 Query: 520 APGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLP 577 GL K D ++ ++F + GR Y LP A +G+ + L Sbjct: 547 GAGL--KQDDMVNHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVANLLAFQ 604 Query: 578 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVAR--------NRAGKAL-ITLPENA 628 P + ++ ++ DA Y + T N LV + NR+G + I L E Sbjct: 605 PEERIAQVI------QIKSYEDAPYLVLATRNGLVKKSKLSDFDSNRSGGIVAINLREGD 658 Query: 629 HVMPPVVIEDASDMLLAITQAGRMLMFPVSD 659 ++ V+ A D LL ++ G+ + F +D Sbjct: 659 ELVGAVLCS-AEDDLLLVSANGQSIRFSATD 688 >UniRef50_B0S912 DNA gyrase subunit A n=6 Tax=Leptospira RepID=B0S912_LEPBA Length = 843 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 235/650 (36%), Positives = 362/650 (55%), Gaps = 26/650 (4%) Query: 17 AYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHP 76 AYL+Y+M VI+ RALP + DGLKPV RR+++AM+E + + KSA+ VG+V+G YHP Sbjct: 47 AYLDYAMSVIVGRALPDVRDGLKPVHRRVLHAMNERAWRSDRPYVKSAKIVGEVIGNYHP 106 Query: 77 HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSEL 136 HGDSA YE MV MAQ FS R L+DGQGN+G+ D + AA RYTE+RL+K +E LL ++ Sbjct: 107 HGDSAVYETMVRMAQTFSMRETLIDGQGNFGSVDGDNA-AAYRYTEARLTKLAEELLKDI 165 Query: 137 GQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALI 196 + T + PNFD T Q+P +LPA PNIL+NG+TGIAVGMAT+IPPHNL+E A IALI Sbjct: 166 EKNTVSFSPNFDDTRQQPDVLPANFPNILVNGSTGIAVGMATNIPPHNLKEAVNAVIALI 225 Query: 197 DQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA---VWKKEDG--A 251 P TL +L+ I+ GPD+PT I + + Y G+GS+R+R+ + + G Sbjct: 226 QNPDITLPELMKILPGPDFPTGGT-IIGGEGLYQAYATGKGSIRIRSKVDIIENNKGREI 284 Query: 252 VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQV 311 +VI +P+QV+ +LE+I + K + + ++ D SD + + V + + + Sbjct: 285 IVIHEIPYQVNKKNMLEKIGDLVNEKIIEGISEILDLSDRKGIRVEIHVKKDANAQV--I 342 Query: 312 MNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLK 371 +N LF T L+ SY I + I LD RP + +L EIL + RR+ V +R + L+K K Sbjct: 343 LNQLFKLTQLQVSYGITMLAI-LDNRPKIFSLKEILKSYAEHRREVVVKRTEFDLDKAQK 401 Query: 372 RLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQAEAILELKLRHLAKL 428 R HILEGL +A NIDEVI IIR E + +LM+ F L+E QA+AILE++L+ L L Sbjct: 402 RAHILEGLRIALENIDEVIRIIRASKDVREAQSSLMATFSLSELQADAILEMRLQRLTSL 461 Query: 429 EEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQ-EREEAK 487 E KI E ++ L+ IL+ ++ +++ EL +Q++G+ R + + E E+ Sbjct: 462 EVQKIIDELEQVRILIADLEDILSKPDRVKSIICDELGKVSQSFGNTRTTEISLESLESS 521 Query: 488 AMSEHDMLPSEPVTIVLSQ--------MGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKS 539 + D++ E V + LS+ M R K G++ K D K + Sbjct: 522 TFNAEDLIADEEVVVQLSEDMFIKRLPMDTFRRQKRGGKGVQGISTKREDFVKKLSSAMT 581 Query: 540 NQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLM--ESDDQKLL 595 + ++ + GR++ + LP A +G+ L + L + + D+ LL Sbjct: 582 HDNLMLFSNKGRAFLLKVYELPIATKEARGKSLKAVINLNDDEIITSLFTFRNFDESYLL 641 Query: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLA 645 M + G+ ++ ++G I L + ++ + + D+ + Sbjct: 642 MVTREGFVKKIQLDEFTNTKKSGIIAIGLRDGDELIDVIANPNNYDVFIG 691 >UniRef50_Q2ST76 DNA gyrase, A subunit n=7 Tax=Mollicutes RepID=Q2ST76_MYCCT Length = 795 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 251/734 (34%), Positives = 410/734 (55%), Gaps = 36/734 (4%) Query: 23 MYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSAC 82 M VI+ RALP + DGLKPV RRI+YAM++LG+ + KKSAR VG+V+GKYHPHGDSA Sbjct: 1 MSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSARIVGEVIGKYHPHGDSAV 60 Query: 83 YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTAD 142 YE MV MAQ FSYRYPL+DG GN+G+ D + AAMRYTE+RL+K S L+ ++ T Sbjct: 61 YETMVRMAQEFSYRYPLIDGHGNFGSIDGDGA-AAMRYTEARLAKISNYLIKDIDMDTVP 119 Query: 143 WVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTT 202 ++ N+D + EP L LPN+L+NGT GIAVGMAT IPPHNL+EV A A ID T Sbjct: 120 FIDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNLKEVVSAINAYIDNNDIT 179 Query: 203 LDQLLDI-VQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA----VVISAL 257 +D++LD + GPD+PT A ++T+ +++R+ Y+ GRGSV +RA E+ V++ + Sbjct: 180 IDEILDNHILGPDFPTGA-LMTNGSKMREGYKTGRGSVIIRAKIDFEENKKHDRFVVTEI 238 Query: 258 PHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFA 317 P+Q + A+++E+IA +++K + + D+RDES++E R++I + + + D V++ L+ Sbjct: 239 PYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEG-IRIIIELKKD-ANPDVVLSKLYK 296 Query: 318 TTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILE 377 T L+ S+ I + + P + +L I+ ++ F+ + + +R + K+ KR HILE Sbjct: 297 YTALQSSFSI-NLLTLNNNLPVLLDLKTIIKNYVEFQVNVIIKRSIFEKNKLTKRYHILE 355 Query: 378 GLLVAFLNIDEVIEIIRN---EDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIR 434 L +A N+D+VI II+N +E K L +++ E Q +AIL+++L+ L LE KI Sbjct: 356 ALHIALDNVDDVINIIKNSKTSEEAKIQLTNKYNFDEEQNKAILDMRLQRLVGLERDKIT 415 Query: 435 GEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDM 494 E + +++ L ++ ++ + NN+LK +L A +GD+RR+ L + EE + + ++ Sbjct: 416 LEMTNIKERLTYLDILINTKEEQNNVLKNQLNEIADKFGDNRRTELID-EELINIEDEEL 474 Query: 495 LPSEPVTIVLSQMGWVRSAKGHDI-------DAPGLNYKAGDSFKAAVKGKSNQPVVFVD 547 +P I+LSQ G++R + +N + D A GK+ V+F Sbjct: 475 IPDLKWMILLSQEGYIRRINPDEFRIQKRGGRGVSVNAEPNDPIDIATMGKAKDWVLFFT 534 Query: 548 STGRSY--AIDPITLPSARGQGEPLTGKLT-LPPGATVDHML-MESDDQK---LLMASDA 600 ++G+ Y + I S +G P+ L L + +L + ++ +K L + Sbjct: 535 NSGKVYRTKLYNIRSYSRTARGLPIVNFLNDLTSEDKITAILPLRNNKEKFNYLTFVTQK 594 Query: 601 GYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDL 660 G ++ NR GK I L EN ++ V D + ++G+++ S + Sbjct: 595 GMIKRTKISEFENINRNGKKAINLRENDQLV-SVFATTGQDTIFIANESGKVIRIKESVV 653 Query: 661 -PQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTG 719 PQ G G + + + + + G +L + +T K K P + +++G Sbjct: 654 NPQSRVGSGVRALKLETNDVVVGAISSFKL------THITTVSNKGLFKKTPIDDYRISG 707 Query: 720 ERGRRGTLMRGLQR 733 G+ +M QR Sbjct: 708 RNGKGIKVMNLNQR 721 >UniRef50_C9Z0I9 GyrA-like gyrase subunit n=9 Tax=Actinomycetales RepID=C9Z0I9_STRSW Length = 818 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 253/697 (36%), Positives = 379/697 (54%), Gaps = 38/697 (5%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 + ++L Y+ VI RALP DGLKPV RRIVY M+E+GL + K AR VG+V+GK Sbjct: 29 QGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPDRGYVKCARVVGEVMGKL 88 Query: 75 HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA--PDDPKSFAAMRYTESRLSKYSELL 132 HPHGDS+ Y+A+V +AQPFS R PLVDG GN+G+ DDP AAMRYTE R++ + L+ Sbjct: 89 HPHGDSSIYDALVRLAQPFSMRLPLVDGHGNFGSLGNDDPP--AAMRYTECRMADATSLM 146 Query: 133 LSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAA 192 + + T D+ PN+DG QEP LPA PN+L+NG +GIAVGMAT++PPHNL EV AA Sbjct: 147 TESIEENTVDFSPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMATNMPPHNLGEVIAAA 206 Query: 193 IALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED--- 249 LI P LD L+ V GPD PT I+ + IR Y GRG+ ++RA ++ Sbjct: 207 RHLIRYPNADLDTLMKHVPGPDLPTGGRIV-GLSGIRDAYATGRGTFKIRATVTVDNVTA 265 Query: 250 --GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVD 307 ++++ LP V +V+ +I + KKL + D++D +D + RLVI ++ V Sbjct: 266 RRKGLIVTELPFTVGPEKVIAKIKDLVGAKKLQGIADVKDLTDRAHGLRLVIEIKNGFVP 325 Query: 308 MDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367 + V+ L+ T +E+S+ IN N+ +DG+P L E+L +L R + VRRR +R Sbjct: 326 -EAVLEQLYKLTPMEESFGIN-NVALVDGQPLTLGLKELLEVYLDHRFEVVRRRSEFRRG 383 Query: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQAEAILELKLRH 424 K RLH++EGLL A ++IDEVI +IR+ D + K L+ RF L++ Q + IL+ LR Sbjct: 384 KRRDRLHLVEGLLTALVDIDEVIRLIRSSDNSAQAKERLIERFALSDIQTQYILDTPLRR 443 Query: 425 LAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQERE 484 L + + +++ E+ +L E +L IL S+ ++ L+ EL A A+ +G +RR+ L E Sbjct: 444 LTRFDRIELESEKEKLNTEIAELTRILESDAELRKLVSGELAAVAKKFGTERRTVLLESS 503 Query: 485 EAKAMSEHDMLPSEPVTIVLSQMGWV---RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQ 541 + + + +P ++LS G + SA+ D G K D +AV + Sbjct: 504 GTQVAAVPLQVADDPCRVLLSSTGLLARTASAEPFTADEDGRRTKH-DVIVSAVPATARG 562 Query: 542 PVVFVDSTGRSYAIDPITLP-----SAR---GQGEPLTGKLTLPPGATVDHMLMESDDQK 593 V V STGR ++ + LP SA G PL LTL G T+ LM D+ Sbjct: 563 EVGAVTSTGRLLRLNVVDLPQLPDTSAAPNLSGGAPLAEFLTLQDGETL-VCLMTLDESS 621 Query: 594 LLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRML 653 +A G V N+ +I+L E ++ V + + L+ IT ++L Sbjct: 622 PGLAIGTEQGVVKRVVPDYPSNKEELEVISLKEGDRIVGAVELRTGEEDLIFITDDAQLL 681 Query: 654 MF----------PVSDLPQLSKGKGNKIINIPSAEAA 680 + P + + +G K+I+ + + A Sbjct: 682 RYQAAQVRPQGRPAGGMAGIKLTEGAKVISFTAIDPA 718 >UniRef50_A1V9C1 DNA gyrase subunit A n=18 Tax=Bacteria RepID=A1V9C1_DESVV Length = 856 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 216/514 (42%), Positives = 330/514 (64%), Gaps = 14/514 (2%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 +++++ + +YL YS+ VI+ RA+P + DGLKPV RRI++A ELG + KKSAR Sbjct: 24 QQISIEKELRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNAYNRPHKKSAR 83 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 VGDV+GKYHPHGDSA Y+A+V MAQ FS R PLVDGQGN+G+ D + AAMRYTE R+ Sbjct: 84 IVGDVIGKYHPHGDSAVYDAIVRMAQEFSMRDPLVDGQGNFGSIDGDAA-AAMRYTEVRM 142 Query: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 S+ + ++++ + T D+ PN+D TL EP +LP R+PN+LLNG+TGIAVGMAT+IPPHNL Sbjct: 143 SRLAGEFIADIEKETVDFRPNYDNTLLEPVVLPTRVPNLLLNGSTGIAVGMATNIPPHNL 202 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA-- 243 E+ A + L+D T+D L+D V+GPD+PT + + + Y GRG+V++R Sbjct: 203 GELCNALLHLLDDDACTIDDLMDHVKGPDFPTGGFVYAGQGLV-DAYTTGRGTVKVRGKV 261 Query: 244 -VWKKEDG--AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 + +++ G A+VI +P+ ++ + ++E+IAA + +++ V DLRDESD + ++ + Sbjct: 262 EIEERKKGFQAIVIREIPYGLNKSSLVEKIAALVNERRIDGVADLRDESDRKGIRVVIDL 321 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360 R D+ V+N L+ T LE SY IN+ + +D RP + +L LS +L RR+ + R Sbjct: 322 KRGTIPDI--VVNALYKYTPLESSYGINMLAV-VDNRPQLLDLKSALSHFLEHRREIIIR 378 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEAI 417 R Y L K R HILEGL +A NIDEV+ +IR P+ A LM RFGL+E Q++AI Sbjct: 379 RTRYDLRKAEARAHILEGLRIALDNIDEVVALIRASATPQEAKDRLMQRFGLSEAQSQAI 438 Query: 418 LELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRR 477 L+++L+ L LE K+ E EL K+ + + IL + + ++++E Y RR Sbjct: 439 LDMRLQRLTNLEHEKLLDEYRELLKKIEYFRSILENIEVLRQVMREEFTEIRDTYATKRR 498 Query: 478 SPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVR 511 + + +E + ++ D++P + V I LS+ G+++ Sbjct: 499 TEVL-MDELEGIAIEDLIPDDDVVITLSRRGYIK 531 >UniRef50_D1R591 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R591_9CHLA Length = 865 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 233/667 (34%), Positives = 378/667 (56%), Gaps = 35/667 (5%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 +++YL YSM VI+ RALP DGLKP QRRI+YAM +L L+ K +K A+ GD G Y Sbjct: 19 KDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGGKHRKCAKISGDTSGDY 78 Query: 75 HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLS 134 HPHG+ Y +V MAQ + RYPLVDGQGN+G+ D + AAMRYTE+RL+ S L+ Sbjct: 79 HPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQP-AAMRYTEARLTHASVQLME 137 Query: 135 ELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIA 194 +L + T + VPN+D T +EP + PA+ PN+L NG++GIAVGMAT+IPPHNL E+ QA + Sbjct: 138 DLDKNTVEMVPNYDETKKEPTVFPAKFPNLLCNGSSGIAVGMATNIPPHNLNELIQATLL 197 Query: 195 LIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA--- 251 ++ P ++D+++ ++ PD+PT I R I++ + GRG + +RAV + E+ Sbjct: 198 VLQNPAVSIDEIMGVMPAPDFPTGGIICGYRG-IKEAFHTGRGRLLLRAVIRVEENEENP 256 Query: 252 ----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVD 307 +++ +P+ V+ +R++EQIA + +K + + DLRDESD + L+ + R V+ Sbjct: 257 DKQRLIVDEIPYNVNKSRLIEQIADLINSKTITGIADLRDESDKDGMRILIELKRGEIVE 316 Query: 308 MDQVMNHLFATTDLEKSYRINLNMIGLD-GRPAVKNLLEILSEWLVFRRDTVRRRLNYRL 366 + ++N LF +DL+ ++ NM+ LD G P V N+ ++++ W+ R + VRRR + L Sbjct: 317 V--ILNQLFKYSDLQITF--GCNMLALDKGLPKVMNVKQLIAAWVDHRIEVVRRRTRFEL 372 Query: 367 EKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEAILELKLR 423 K R HILEG L A ++DEV+ +IR N +E + L+ RF LTE QA A+L+LKL Sbjct: 373 NKAEARAHILEGYLKAIQHMDEVVRVIRASNNREEARDELIQRFDLTERQANAVLDLKLY 432 Query: 424 HLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQER 483 L LE KI E EL ++ D L+ +LASE + +++++EL + + R++ + Sbjct: 433 QLTGLEYEKINEEYRELLQKIDYLRAVLASEAMVRDIIREELLEIQKNHRSGRKTQIIAA 492 Query: 484 EEAKAMSEHDMLPSEPVTIVLSQMGWV--------RSAKGHDIDAPGLNYK-AGDSFKAA 534 E M D++ +E V I +S+ ++ R + G++ K D+ K Sbjct: 493 ESEVNM--EDLIANESVIITISEDDYIKRMPVDTFREQRRGGQGIAGMHLKREEDAIKGL 550 Query: 535 VKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLT-LPPGATVDHMLMESDD 591 ++ ++ + GR Y + +P + +G+PL L + P + +L S+ Sbjct: 551 YVASTHDYLLIFTNLGRCYWLKVWQIPETGRKSKGKPLINLLEDIRPDEKIATVLRVSNF 610 Query: 592 QK---LLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQ 648 ++ +LMA+ G ++ R G + + E V+ ++ D+ ++L T Sbjct: 611 EQQAYILMATKKGIVKKTELSEFSHPRRKGIWALDIVEGDEVVTARLVSDSQQIML-FTY 669 Query: 649 AGRMLMF 655 G + F Sbjct: 670 HGMAVRF 676 >UniRef50_A4S991 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S991_OSTLU Length = 897 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 241/670 (35%), Positives = 373/670 (55%), Gaps = 44/670 (6%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 + +YL+Y+M VI+ RALP DGLKPV RRI+Y M ELGL A +K AR VGDVLGKY Sbjct: 45 KTSYLSYAMSVIVGRALPDARDGLKPVHRRILYGMHELGLRADKPHRKCARVVGDVLGKY 104 Query: 75 HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSEL-LL 133 HPHGD + YEA+V +AQ FS PLVDG GN+G+ DD AAMRYTE RL+K +E LL Sbjct: 105 HPHGDGSVYEALVRLAQDFSMSAPLVDGHGNFGSLDDDPP-AAMRYTECRLNKLAEKGLL 163 Query: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193 +++G ++ FDG+ EP++LPAR+PN+L+NG++GIAV +AT++ PHNL E A Sbjct: 164 ADIGNECVNFTETFDGSQTEPEVLPARVPNLLINGSSGIAVAVATNMAPHNLGESVDALC 223 Query: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR----------A 243 AL P +LD+L+ ++ PD+PT ++T+++ +++IYE G+G V +R A Sbjct: 224 ALAKNPDCSLDELMALLPAPDFPT-GGVVTNKSGMKEIYETGKGGVTLRGRATIERVSAA 282 Query: 244 VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 + AVVIS +P+Q + AR++EQIA + + + + D+RDESD + ++ + R Sbjct: 283 RGSLDKDAVVISEIPYQTNKARLVEQIADHVNGRTIDGISDIRDESDRDGMRVVIEIKRG 342 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLN 363 D V+ L+A T LE + +N N+ +D +P V L +IL E++ FR DT+ RR Sbjct: 343 --YDAASVLEELYAKTKLEVKFFVN-NVALIDNKPTVMPLRQILDEFIKFRVDTIERRTR 399 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEIIR-NEDEPKPA--LMSRFGLTETQAEAILEL 420 + L K R H++EG + + D V++IIR ++D P + L GL++ QA++IL + Sbjct: 400 FMLSKAQDRKHLVEGFSIVLADADGVVKIIRKSKDGPSASKKLRESHGLSDIQADSILAM 459 Query: 421 KLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPL 480 LR L LE K+ E EL ++ QG+L+++ K+ ++L +E +A+ RR+ + Sbjct: 460 PLRRLTGLEADKLDAELKELNEQIAHFQGLLSNKSKVIDVLVQEAMEAKEAFARPRRTSV 519 Query: 481 QEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG--------LNYKAGDSFK 532 ++ E + E D P + + + LS+ G+V+ + A +A D Sbjct: 520 EQIESLSGV-EDDSPPKDNI-LTLSERGYVKRICPKNFGAQNRGTRGKRMSKLRANDELS 577 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTL--PPGATVDHMLME 588 A+ K + ++F GR + +P + G P T L V ML Sbjct: 578 KAMHCKDSDQILFFSDRGRVQKLSAKAIPQSELNTIGVPATSLLNTFAKRNQNVTAMLST 637 Query: 589 -------SDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASD 641 +DDQ ++M + G V + ++ GK +ITL + + V+ SD Sbjct: 638 NMKQGEVADDQVVVMLTSQGKVSVASAASMLGHK--GKKVITL-DKGDRLQQVMFARTSD 694 Query: 642 MLLAITQAGR 651 L IT G+ Sbjct: 695 HLF-ITGTGK 703 >UniRef50_Q5MZD4 DNA gyrase A subunit n=8 Tax=Cyanobacteria RepID=Q5MZD4_SYNP6 Length = 858 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 223/509 (43%), Positives = 321/509 (63%), Gaps = 22/509 (4%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 ALH+ + +YL Y+M VI+ RALP DGLKPVQRRI+YAM ELGL F+KSAR VG Sbjct: 17 ALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPDRPFRKSARVVG 76 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSK 127 DVLGKYHPHGD A Y+A+V + Q FS RYPL+ G GN+G+ D DP AAMRYTE+RL+ Sbjct: 77 DVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSIDNDPP--AAMRYTETRLAP 134 Query: 128 YSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 S + LL E+G+ T D+V NFD + QEP +LPA+LP +LLNG +GIAVGMAT+IPPHNL Sbjct: 135 VSHVALLEEIGEETVDFVANFDNSQQEPSVLPAQLPFLLLNGCSGIAVGMATNIPPHNLG 194 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 E+ A IALID+P+ + LL V GPD+PT E+I S+ I Y GRGS+ +R + + Sbjct: 195 EIVDALIALIDRPQLSDRDLLRYVPGPDFPTGGEVIGSQG-ILDAYLEGRGSIPVRGIAR 253 Query: 247 KED----------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 E+ ++++ LP+QVS A +E++A + + KL + D+RDESD E R Sbjct: 254 IEEIQPGKGRHRRPVIIVTELPYQVSKAGWIEKVADLVNDGKLQGIADIRDESDREG-MR 312 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 +VI R + D+V+ L+ T L+ ++ L I ++G+P +L ++L ++L FR Sbjct: 313 VVIELRRD-AQADKVLEQLYKRTALQSNFGAILLAI-VEGQPQQLSLKQLLEQFLSFREG 370 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQ 413 T+RRR + LE+ +RL ILEGLL + ++D +IEI+R + A L F L E Q Sbjct: 371 TLRRRYGHELEQTERRLMILEGLLRSLSDLDGLIEILRQSPDGGTARARLQVHFDLNERQ 430 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 A+A+L + +R + LE+ +++ E + L +++ +LQ +L + LKK+L+ + +G Sbjct: 431 ADAVLSMPMRRITSLEQEQLQQEAANLREQQARLQTLLGDRPTLLKALKKDLRDLKRRFG 490 Query: 474 DDRRSPLQE-REEAKAMSEHDMLPSEPVT 501 R+ L E EA A P P++ Sbjct: 491 SPHRTRLPEIPPEAIAAPRQVTAPVAPIS 519 >UniRef50_B2RJ49 DNA gyrase A subunit n=17 Tax=Bacteria RepID=B2RJ49_PORG3 Length = 859 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 239/689 (34%), Positives = 385/689 (55%), Gaps = 46/689 (6%) Query: 1 MSDMAERL---ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 57 M+D +R+ ++ E + AY++YSM VI+ RALP + DG KPV RR++YAM+E G + Sbjct: 1 MTDREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYT 60 Query: 58 AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 117 +K A VG+VLG YHPHGDS+ Y A+V MAQP+S RYPLVDGQGN+G+ D S AA Sbjct: 61 NPTRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSV-DGDSPAA 119 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 MRYTESRLS+ + +L ++ + T D+ NFD T QEP +LP R+PN+L+NG +GIAVGMA Sbjct: 120 MRYTESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMA 179 Query: 178 TDIPPHNLREVAQAAIALID-QPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR 236 T++PPHNL E +A I+ ++ L+ V+ PD+PT I + +++ +E GR Sbjct: 180 TNMPPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPT-GGFIYGYSGVKEAFETGR 238 Query: 237 GSV--RMRAVWKKEDGA--VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHE 292 G V R RA ++ + ++I+ +P+ V+ A ++ IA + K+L + ++ DES+ + Sbjct: 239 GRVVIRSRAEIEQHNNHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRK 298 Query: 293 NPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLV 352 +V + R + V+N L+ T L+ S+ +N N+ + GRP + NL +++ E++ Sbjct: 299 GMRIVVEIKRDANASV--VLNKLYKMTALQSSFSVN-NIALVKGRPRLLNLKDLIGEFVD 355 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGL 409 R++ V RR + L K +R HILEGLL+A NIDEVI IIR+ + A L+ RF L Sbjct: 356 HRQEVVTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIERFDL 415 Query: 410 TETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADA 469 ++ QA +I++++LR L LE K+R E E+ + L+ +LA + L+K EL Sbjct: 416 SDIQARSIVDMRLRALTGLERDKLRAEFEEIMASINHLEALLADRALLMELVKSELLEIK 475 Query: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVR---------SAKGHDIDA 520 + YGD R+S + E + D + + I LS MG+++ A+G + A Sbjct: 476 EKYGDTRKSEIIYASE--EFNPEDFYADDDMIITLSHMGYIKRTPLSEFRTQARG-GVGA 532 Query: 521 PGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPP 578 G + + D + + ++ + GR Y + +P + +G + L + P Sbjct: 533 KGSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPEGAKNAKGRAIQNLLNIDP 592 Query: 579 GATVDHMLMESD---DQKLLMASDAGYGFVCTFNDLV--------ARNRA-GKALITLPE 626 V+ + + D++ + ++ Y CT ++ +R RA G I L + Sbjct: 593 DDKVNAFIRIKNLTTDKEFV---NSHYLLFCTKRGIIKKTLLEAFSRPRANGVIAIDLRD 649 Query: 627 NAHVMPPVVIEDASDMLLAITQAGRMLMF 655 N ++ + DM++A + GR + F Sbjct: 650 NDGLVSVRLTNGKCDMVIA-NRGGRAIRF 677 >UniRef50_O84192 DNA gyrase subunit A n=16 Tax=Bacteria RepID=GYRA_CHLTR Length = 836 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 236/673 (35%), Positives = 370/673 (54%), Gaps = 34/673 (5%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 L E + +YL YSM VI+ RALP DGLKP QRRI+YAM +L L K +K A+ GD Sbjct: 13 LEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHRKCAKICGD 72 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKY 128 G YHPHG+S Y +V MAQ ++ RYPLVDGQGN+G+ D DP AAMRYTE+RL+ Sbjct: 73 TSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPA--AAMRYTEARLTHS 130 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 + LL +L + T D VPN+D T EP + P++ PN+L NG++GIAVGMAT+IPPHNL E+ Sbjct: 131 AIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPPHNLGEL 190 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248 +A + ++ +T+++ +L+++ GPD+PT II IR Y GRG +R+RA E Sbjct: 191 IEATLLVLANSQTSIEDILEVMPGPDFPT-GGIICGTEGIRSTYYTGRGKLRLRARMHVE 249 Query: 249 DGA------VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 + + ++++ +P+ V+ +R++EQIA + K L + D+RDESD + R+V+ + Sbjct: 250 ENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDG-IRVVLELK 308 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR-PAVKNLLEILSEWLVFRRDTVRRR 361 + V+N L+ TD++ ++ NM+ LD P N+ ++S W+ R D ++RR Sbjct: 309 KGE-SSEVVINRLYKFTDVQVTF--GANMLALDKNLPRTMNIHRMISAWIRHRMDVIQRR 365 Query: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEAIL 418 Y L K R HILEG L A +DEV++ IR N++ K L+ F +E QA AIL Sbjct: 366 TRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQALAIL 425 Query: 419 ELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRS 478 EL+L L LE K++ E SEL ++ + +LA E + +++++ELQ + + RR+ Sbjct: 426 ELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTPRRT 485 Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV--------RSAKGHDIDAPGLNYKAGDS 530 + E + D++ E V I +S +V R K G + K G Sbjct: 486 RI-EMDAGDVRDIEDIISDESVIITISGDDYVKRMPVKVFREQKRGGQGVTGFDMKKGSD 544 Query: 531 FKAAVKGKSNQPVVFVDST-GRSYAIDPITLPSA--RGQGEPLTGKLT-LPPGATVDHML 586 F AV S + + + + G+ Y + LP R +G+P+ L + PG V +L Sbjct: 545 FLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPEGERRAKGKPIINFLEGIRPGEQVAAVL 604 Query: 587 ---MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDML 643 + L +A+ G + + + + G + + + ++ I + + + Sbjct: 605 NVKRFEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIAARHIANDEEKV 664 Query: 644 LAITQAGRMLMFP 656 + T+ G + FP Sbjct: 665 MLFTRLGMAVRFP 677 >UniRef50_C6X523 DNA gyrase subunit A n=20 Tax=Bacteria RepID=C6X523_FLAB3 Length = 884 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 230/671 (34%), Positives = 378/671 (56%), Gaps = 38/671 (5%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 +++Y++YSM VI+ RALP + DGLKPV RR++Y M L + ++ K KSAR VGDVLGKY Sbjct: 18 KSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLNVFSNRKHLKSARIVGDVLGKY 77 Query: 75 HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133 HPHGDS+ Y+AMV MAQP+S RYP VDGQGN+G+ D DP AAMRYTE++L K S+ +L Sbjct: 78 HPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPP--AAMRYTEAKLKKISDEIL 135 Query: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193 ++L + T D+ NFD ++ EP ++P ++P +L+NGT+GIAVGMAT++ PHNL E A + Sbjct: 136 ADLDKDTVDFQNNFDDSMTEPTVMPTKIPTLLVNGTSGIAVGMATNMAPHNLSESIDAIV 195 Query: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED---- 249 A ID + T+D+L+ + PD+PT II +R + GRG + +RA E+ Sbjct: 196 AYIDNKEITIDELMKHIIAPDFPT-GGIIYGYDGVRDAFHTGRGRIVLRAKINFEEVGNR 254 Query: 250 GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMD 309 A++++ +P+QV+ A ++ + A ++++K+P + ++RDESD + R+V + + + + Sbjct: 255 SAIIVTEIPYQVNKAEMIARTAELVKDEKIPGIYEIRDESDRQG-LRIVYELKHDAIP-N 312 Query: 310 QVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKV 369 V+N L+ T L+ S+ +N N+ + GRP NL I+ ++ R + V RR + L+K Sbjct: 313 VVLNMLYKYTSLQTSFSVN-NIALVKGRPEQLNLKNIIHHFVDHRHEVVIRRTEFELKKA 371 Query: 370 LKRLHILEGLLVAFL---NIDEVIEIIRNEDEP---KPALMSRFGLTETQAEAILELKLR 423 +R HILEG + ++D+ I IIR+ P K LM F L++ QA+AIL+L+L Sbjct: 372 KERAHILEGFMKVIGTQDDLDKAIAIIRHSSNPAEAKDGLMKEFDLSDLQAQAILDLRLA 431 Query: 424 HLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQER 483 L +E KIR E E+ + ILA+E + ++K EL + YGD+RRS + Sbjct: 432 RLTGMELDKIRAEYDEIMNLIRDFEDILANESRRFEIIKAELIEMKEKYGDERRSEID-- 489 Query: 484 EEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP---GLNYKAG-----DSFKAAV 535 MS D++P E V + +S G+++ + G+ +A D + V Sbjct: 490 YSGGEMSIEDLIPDEKVVLTISHAGYIKRTSLSEYKVQTRGGVGNRAATTRDEDFLEYIV 549 Query: 536 KGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHMLMESD--- 590 ++Q ++F G+ + + +P S +G + + + P + + +D Sbjct: 550 AATNHQYMLFFTEKGKCFWLRVFEIPEGSKISKGRAVQNLINIEPDDKIKAYIRTNDLKD 609 Query: 591 -----DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLA 645 ++M + G + G I + +N ++ + S++++A Sbjct: 610 AEYINQMNVVMVTKNGTIKKTSLEAYSRPRTNGVNAIEIRDNDQLLGARLTSGDSEIMIA 669 Query: 646 ITQAGRMLMFP 656 T+ G+ + FP Sbjct: 670 -TKNGKCIRFP 679 >UniRef50_Q2NJM2 DNA gyrase subunit A n=5 Tax=Candidatus Phytoplasma RepID=Q2NJM2_AYWBP Length = 835 Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust. Identities = 201/523 (38%), Positives = 330/523 (63%), Gaps = 18/523 (3%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 + + L E + ++L+Y+M VI+ RALP I DGLKPVQRRI+Y+M ELG+ + A +KK+AR Sbjct: 23 QEVNLSEEMKKSFLSYAMSVIVSRALPDIKDGLKPVQRRILYSMKELGVYSHASYKKAAR 82 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 VGDV+GKYHPHGDS+ YEAMV MAQ FSYRYPLVDG GN+G+ D K+ AAMRYTE ++ Sbjct: 83 VVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGHGNFGSIDGDKA-AAMRYTEVKM 141 Query: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 +K + L+ + + T D+V N+DGT +EP +LP LPN+L+NG TGIAVGMAT IP HNL Sbjct: 142 AKMAMELIKNIDKETIDFVDNYDGTEKEPLVLPTALPNLLINGATGIAVGMATKIPTHNL 201 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA-- 243 EV I I+ ++D+L+ ++GPD+PT E++ ++ ++ Y G+G+V ++A Sbjct: 202 GEVIDGLINYINNKDISIDELMQHIKGPDFPTGGELLGLQS-LKSAYHTGQGAVILKAKS 260 Query: 244 --VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 + ++ +++++ +P+QV ++E+IA ++NK + + DLRDES + ++ + Sbjct: 261 HVLEERGKTSIIVTEIPYQVKKTDLIEKIAFLVKNKIVEGITDLRDESSRKGMKIVIELK 320 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR-PAVKNLLEILSEWLVFRRDTVRR 360 R + ++N L+ + L S+ I NM+ L G+ P + +L +IL + FR + + R Sbjct: 321 RDANAKI--ILNKLYKHSQLRISFGI--NMVALVGKTPQLVSLKQILEAFFNFRIEVINR 376 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEAI 417 + ++ L+K R H++ L+ +I+ I++I+ + K A LM ++ E Q++AI Sbjct: 377 QKSFELKKASARKHLVTALITILEDIEIAIKLIKTSTDVKEAQRKLMQKYNFDEIQSKAI 436 Query: 418 LELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRR 477 LE+ L+ L+ E K+ E+ L +E + + I+ S++K +L+KEL + Y DDR+ Sbjct: 437 LEMSLQRLSNQETQKLITEEKNLTQEILECKSIIDSQKKKERILEKELLEMKKKYQDDRK 496 Query: 478 SPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDA 520 + L + + D++ +P+ I ++ G+++S DID Sbjct: 497 TTLN-FDAPLNFEDEDLIEKKPIIITITNKGYIKSM---DIDT 535 >UniRef50_C8PKZ3 DNA gyrase, A subunit n=2 Tax=Campylobacter RepID=C8PKZ3_9PROT Length = 914 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 228/570 (40%), Positives = 351/570 (61%), Gaps = 29/570 (5%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 + + E + +YL+YSM VI+ RALP DGLKPV RRI+YAM++LG+ + +KKSAR V Sbjct: 14 IDVEESIKTSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRQPYKKSARIV 73 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 GDV+GKYHPHGD+A Y+A+V MAQ FS R P VDGQGN+G+ D + AAMRYTE+R++ Sbjct: 74 GDVIGKYHPHGDTAVYDALVRMAQSFSMRIPSVDGQGNFGSIDGDGA-AAMRYTEARMTP 132 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 +E LL +L + T D+VPN+D +L EP +LPAR+PN+LLNG++GIAVGMAT+IPPH+L E Sbjct: 133 LAEELLKDLDKETVDFVPNYDESLNEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLDE 192 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 + + L++ +L++++ ++GPD+PT II + I + Y+ GRG V++RA Sbjct: 193 LVGGLLILLENKNASLEEIMGEIKGPDFPT-GGIIYGKKGIIEAYKTGRGRVKIRAKTHI 251 Query: 248 EDGA----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 E A +VI LP+Q + AR++EQIA ++ K++ + ++RDESD + R+VI + Sbjct: 252 EKKASKDVIVIDELPYQTNKARLIEQIADLVKEKQIEGISEVRDESDRDG-IRVVIELKR 310 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR-PAVKNLLEILSEWLVFRRDTVRRRL 362 + + + V+N+LF T +E ++ + M+ +DG+ P + L+E+L +L R+ + RR Sbjct: 311 DAMS-EIVLNNLFKQTTMEATF--GVIMLAIDGKEPKIFTLIELLKLFLNHRKTVIIRRT 367 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEAILE 419 + L+K R HILEGL +A NIDEVI++IRN + A LMSRF L+E Q+ AIL+ Sbjct: 368 IFELQKARARAHILEGLKIALDNIDEVIDVIRNSADTNVARENLMSRFDLSEAQSGAILD 427 Query: 420 LKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSP 479 ++L L LE KI E E+ E +L IL SE + ++K EL + R + Sbjct: 428 MRLSRLTGLEREKIEEELKEILAEIKRLDAILKSEELIEGIIKDELLEIKDKFKCPRITE 487 Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNY---KAGDSFKAAVK 536 + + E + + ++ +E + + ++ G+++ P Y K G + AV Sbjct: 488 IVDDYEDIDIED--LIANENMVVTITHRGYIKR-------VPSKTYEKQKRGGKGRVAVT 538 Query: 537 GKSNQPVVFVDSTGRSYAIDPITLPSARGQ 566 + F++S S D + + RGQ Sbjct: 539 TYDDD---FIESFFTSNTHDTLMFITDRGQ 565 >UniRef50_Q2GCH4 DNA gyrase, A subunit n=2 Tax=Neorickettsia RepID=Q2GCH4_NEOSM Length = 869 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 238/706 (33%), Positives = 382/706 (54%), Gaps = 68/706 (9%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 L + +++YL+Y+M VI++RA+P + DGLKPV RRI+Y+M+EL + ++KSAR +G+ Sbjct: 9 LEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRKSARVIGE 68 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKY 128 V+GKYHPHGDSA Y+A+V MAQ FS PL+DGQGN+G+ D DP AAMRYTE RL Sbjct: 69 VIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDGDPA--AAMRYTEVRLEYI 126 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 S+ LL +L + + D+ N+D + EP +LPA+ PNIL+NGT G+AVGMAT++P HNL EV Sbjct: 127 SKFLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTHNLSEV 186 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248 +A ++ T D+LL +++GPD+PT II I+ +E+GRGS+ +R+ E Sbjct: 187 IEACKLYLENNNVTTDELLKVIKGPDFPTGGLIIGEEG-IKASFESGRGSIIIRSKTHFE 245 Query: 249 DG----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 + A+++ LP+QV+ A+++E IA ++ K+L + DLRDES+ E ++ + R Sbjct: 246 ETEAGKAIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEGIRVVIELKRG- 304 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLN 363 + V+N LF T L+ SY + NM+ LD RP + +L +IL+ ++ R++ + RR Sbjct: 305 -ASFEVVLNQLFQMTQLQTSY--STNMVLLDNMRPTLMSLRDILAAFIAHRKEVISRRTE 361 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA--------------------- 402 +RL K ++ ++L L VA LNIDEV+ I+++ + + A Sbjct: 362 FRLAKAREKANVLVALYVAILNIDEVVHILKSSGDNEAAIKALSAKHWAIDEELELLVET 421 Query: 403 -----LMSR-FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERD---QLQGILAS 453 L++R + L+ Q++AILE+K++ + E+ ++ +E+ E D + IL S Sbjct: 422 ISNIKLLNREYKLSTAQSKAILEMKMQRITNTEKGQL---VAEIHAEMDIVKECASILGS 478 Query: 454 ERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV--- 510 E + N++ +EL Y R+S + + A +E D++ E V + + G++ Sbjct: 479 EAVLTNVIVRELNEIKAKYPQARKSIILKNVNA-VYAEEDLIEREQVVVTATYSGYIKRV 537 Query: 511 ---------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP 561 R KG N K+ D ++ ++F S G+ Y + LP Sbjct: 538 HISNYRVQRRGGKGR----IAQNIKSEDQLAQIFVLSTHDEILFFSSRGKVYKLKAYKLP 593 Query: 562 SARGQ--GEPLTGKLTLPPGATVDHM--LMESDDQKLLMASDAGYGFVCTFNDLVARNRA 617 Q G L L ++ + L SD + L+ + G + +D Sbjct: 594 IGEPQSRGRALVNIFDLADDESITSILPLKSSDAENLIFLTAQGKVKRNSMSDFAYVPAN 653 Query: 618 GKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQL 663 GK I L +N + V D + T+ G+ + F V DL L Sbjct: 654 GKVAIRLNDN-DALISVKTAQNEDCVFISTRDGKCIRFLVGDLRVL 698 >UniRef50_B7KIH9 DNA topoisomerase (ATP-hydrolyzing) n=6 Tax=Cyanobacteria RepID=B7KIH9_CYAP7 Length = 848 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 206/486 (42%), Positives = 307/486 (63%), Gaps = 22/486 (4%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 ALH+ E +YL Y+M VI+ RALP + DG+KPV RRIVYAM ELGL A ++K AR VG Sbjct: 17 ALHQEMERSYLEYAMSVIVGRALPDVRDGMKPVHRRIVYAMHELGLTADRPYRKCARVVG 76 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSK 127 DVLGKYHPHGD A Y+A+V M Q FS RYPL+ G GN+G+ D DP AAMRYTE+RL+ Sbjct: 77 DVLGKYHPHGDQAVYDALVRMVQEFSSRYPLLAGHGNFGSVDNDPP--AAMRYTETRLAP 134 Query: 128 Y-SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 E +L + + D+ NFD + QEP +LPA+LP +LLNG +GIAVGMAT+IPPHNL Sbjct: 135 IGQEAVLGNISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCSGIAVGMATNIPPHNLG 194 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 E+ IALID+P+ +QL +I+ GPD+PT +II + I++ Y G+G + ++ V Sbjct: 195 EIVDGLIALIDRPQLKDEQLWEIIPGPDFPTGGKIIDTEG-IKEAYRTGKGIIPVQGVTH 253 Query: 247 -----------KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 KE A+V++ LP+QV+ + +E++A + +L + D+RDESD + Sbjct: 254 VETISLEGRRPKERTAIVVTELPYQVNKSGWIEKVADLVNQGRLEGIADIRDESDRQG-- 311 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 V++ +V+ L+ T L+ ++ + L + +D +P +L E+L E+L FR Sbjct: 312 MRVVIELKREFKTKKVLEDLYKQTALQSNFGVILLAL-VDNKPCQLSLRELLEEFLNFRE 370 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTET 412 T+ R+ + L + RLH+LEGLL+A N+D+VI I+RN + K ++E Sbjct: 371 QTLTRQYRHELTQAQTRLHLLEGLLIALRNLDQVINILRNAPDGTTAKQKFQEELTISEE 430 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QA++IL + +R L LE+ K++ E +L++ +QLQ +L ++ LKK+L+A + + Sbjct: 431 QADSILAMPMRRLTGLEQQKLQTEYEDLQQRINQLQVLLNDRIELMKSLKKDLRALKRKF 490 Query: 473 GDDRRS 478 GD+RR+ Sbjct: 491 GDERRT 496 >UniRef50_C6XJ15 DNA gyrase, A subunit n=28 Tax=Bacteria RepID=C6XJ15_HIRBI Length = 981 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 258/704 (36%), Positives = 380/704 (53%), Gaps = 72/704 (10%) Query: 17 AYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHP 76 +YL+Y+M VI+ RALP + DGLKPV RRI+++MSE G +KKSAR VGDV+GKYHP Sbjct: 55 SYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMSEQGYTFDKAYKKSARVVGDVIGKYHP 114 Query: 77 HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSE 135 HGD + Y+A+V MAQ FS PL+DGQGN+G+ D DP AAMRYTE +L K + LL++ Sbjct: 115 HGDQSVYDALVRMAQNFSMGLPLLDGQGNFGSMDGDPA--AAMRYTEVKLKKVANHLLAD 172 Query: 136 LGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIAL 195 + + T ++ N+DG+ +EP +LPAR PN+L+NG GIAVGMAT+IPPHNL EV A IA+ Sbjct: 173 IDKDTVNFQENYDGSEKEPIVLPARFPNLLVNGGGGIAVGMATNIPPHNLGEVIDATIAM 232 Query: 196 IDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-----G 250 I+ P + LL+IV GPD+PT A +I RA R GRGSV MR+ E+ Sbjct: 233 IEDPNIDDEALLEIVPGPDFPTGA-LIIGRAGSRSGLMTGRGSVIMRSKSSIEELKNGRE 291 Query: 251 AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQ 310 A+V + +P+QV+ A ++E+IA +R+K++ + D+RDESD + +V V R ++ Sbjct: 292 ALVFTEIPYQVNKASMIEKIAELVRDKRIEGIADMRDESDRDGVRVVVEVKRDASPEV-- 349 Query: 311 VMNHLFATTDLEKSYRINLNMIGLD-GRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKV 369 V+N LF T L+ S+ +NM+ L+ GRP + +L IL +++FR + V RR + L K Sbjct: 350 VLNQLFRYTQLQTSF--GMNMLALNSGRPELLSLKAILQAFIIFREEVVARRTKFELNKA 407 Query: 370 LKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR-------------------- 406 R H+L GL +A NIDEVI+IIR+ +P A LM R Sbjct: 408 RARAHLLVGLALAVANIDEVIKIIRHSPDPSTAREKLMDRAWPAQDMLSLINLIADRRTV 467 Query: 407 ------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNL 460 L+E QA AIL+L+L+ L L +I E L IL+S ++ + Sbjct: 468 ANEVGEIRLSEEQARAILDLRLQRLTGLGRDEIGDEARGLADRIADYLDILSSRPRVMEI 527 Query: 461 LKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV--------RS 512 + +EL+ + + RRS E E M + + E + ++ + G+ R+ Sbjct: 528 ITEELRVVREEFAIPRRSQFIEAE--LDMDDEAFIEKEDMVVMFTHGGYAKRTALSIYRT 585 Query: 513 AKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID----PITLPSARGQGE 568 G+ K D+ ++ V+F STG Y P+ P +RG+ Sbjct: 586 QHRGGRGRSGMGTKEEDAVTRFFVANTHTEVLFFSSTGMVYKTKVWRMPLGTPQSRGKA- 644 Query: 569 PLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARNRAGKALI 622 L L L G T+ ++ +D++ +L A+ +G +D NR GK + Sbjct: 645 -LVNLLPLDKGETITSVMPLPEDEEERANMNILFATRSGGVRRNKLSDFTQVNRNGKIAM 703 Query: 623 TLPENAHV------MPPVVIEDASDMLLAITQAGRMLMFPVSDL 660 L E A V + V I D ++ T G+ + F V D+ Sbjct: 704 KLDE-AQVAGSDDGIVGVQICSPDDDVMLTTALGQCIRFKVEDV 746 >UniRef50_P35810 DNA gyrase subunit A n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=GYRA_FIBSS Length = 903 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 227/593 (38%), Positives = 344/593 (58%), Gaps = 32/593 (5%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 ++ YL YSM VI+ RALP DG KPV RR++Y+M +LG+ + KSAR VGDV+GKY Sbjct: 20 QDCYLRYSMSVIVARALPDARDGFKPVHRRVMYSMHKLGVVPNKGTVKSARIVGDVIGKY 79 Query: 75 HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLS 134 HPHGD A Y+ + MAQ FS RYPLV GQGN+G+ D S AAMRYTE++++ L+L Sbjct: 80 HPHGDVAVYDTLARMAQDFSLRYPLVFGQGNFGSID-GDSPAAMRYTEAKMNNLGALMLE 138 Query: 135 ELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIA 194 +L + T D PN+D +L+EP +LP+ LPN+++NGT+GIAVGMAT++ PHNLREV A A Sbjct: 139 DLEKETVDMGPNYDESLEEPLVLPSALPNMIVNGTSGIAVGMATNMAPHNLREVGAAIHA 198 Query: 195 LIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA--- 251 L + P T + L++ V+GPD+PT A I+ R+ IR+ Y G G VR+RA + E A Sbjct: 199 LAENPDLTGEDLMEYVKGPDFPTGA-IVCGRSGIREAYLTGHGRVRVRARTEIETDAKGK 257 Query: 252 --VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMD 309 ++++ +P+ V+ A + ++IA +R+K++ + D+RDES + R+VI R + V + Sbjct: 258 PRIIVTEIPYMVNKAELCKKIADLVRDKRIDGITDIRDESSRD--IRIVIELRRDAVG-E 314 Query: 310 QVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKV 369 V+N+LF T L+ ++ I N+ ++ P + L ++L ++ R D + R + L+K Sbjct: 315 VVLNNLFKYTQLQTTFSI-YNLALVNNLPKLLTLKDLLQVYIDHRLDVITRATQFDLKKA 373 Query: 370 LKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAEAILELKLRHLA 426 RLHI+EGL +A NIDEV++IIR K +L RF L E Q++AI++++L L Sbjct: 374 AARLHIIEGLRIATQNIDEVVKIIRQSKTTEIAKQSLQDRFSLDEIQSQAIVDMRLAQLV 433 Query: 427 KLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEA 486 L K+ E +EL L+ IL + ++ ++L A YGD+RR+ + E + Sbjct: 434 GLNIEKLEAEYNELIATVADLKDILEKRERRVAIMLQKLDAVVDKYGDERRTTIGEAIDD 493 Query: 487 KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDS-FKAAVKGKSNQPVVF 545 + D++ E I LS+ G++R ID + G A +K + N +F Sbjct: 494 S--DDEDLIAEEEQVITLSKEGYIRRLP---IDTFKAQNRGGKGIIGAGLKDEDNVEQIF 548 Query: 546 VDST----------GRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHML 586 ST GR Y LP G+G P+ + L G V ++ Sbjct: 549 TASTHSYLLVFTNKGRVYWTKVYRLPEGARNGKGRPIVNFVALTEGEKVQAIV 601 >UniRef50_P47719 DNA gyrase subunit A n=26 Tax=Bacteria RepID=GYRA_MYCGA Length = 846 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 233/672 (34%), Positives = 387/672 (57%), Gaps = 49/672 (7%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 E +++ Y+M VI+ RALP DGLKPV RR++Y GL ++KSA+ VG V+GKY Sbjct: 28 ETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSAQIVGHVMGKY 87 Query: 75 HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLS 134 HPH DSA YE MV MAQPFS RY L+DG GN+G+ D S AAMRYTE+RLSK S +L Sbjct: 88 HPHSDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDGD-SAAAMRYTEARLSKISAEMLR 146 Query: 135 ELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIA 194 + + T D+V N+D + QEP +LP+ PN+L NG++GIAVGMAT+IPPHNL E+ Sbjct: 147 NIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANGSSGIAVGMATNIPPHNLSELIGGIKH 206 Query: 195 LIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA--- 251 L+ T+++L + ++GPD+PT AEI+ I + + GRGSV +RA + E+ A Sbjct: 207 LLVNENATIEELKEFIKGPDFPTAAEILGETG-INEYFNTGRGSVSVRAKSEIEELANNK 265 Query: 252 --VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMD 309 +VI+ +P+ V+ A ++ +IA ++ +++ + DLRDES+ E R+VI + + + + Sbjct: 266 SNIVITQIPYMVNKANLINKIAELVKTEQIQGIADLRDESNREG-IRIVIETKRDVIP-E 323 Query: 310 QVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKV 369 ++N L+ +T L+ ++ + + + ++ +P V NL E L ++ + D + R+ N+ L+K Sbjct: 324 VLLNQLYKSTQLQTNFSVAM-LALVNNQPKVLNLKEALQIYIDHQFDILLRKTNFELKKA 382 Query: 370 LKRLHILEGLLVAFLNIDEVIEIIRN---EDEPKPALMSRFGLTETQAEAILELKLRHLA 426 HI+EGL++A NID+VIE I+N ++ K LM+++ L++ QA+AIL+++LR L+ Sbjct: 383 KASAHIVEGLVIATNNIDDVIETIKNAKDNEDAKNTLMTKYELSDLQAKAILDMRLRSLS 442 Query: 427 KLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEA 486 LE ++ E ++L++ L+ IL ++ + ++ +L +GD+RR+ + + Sbjct: 443 GLERENLQKELAKLKELIKDLEEILQNKERRIKIISDQLDEIDHKFGDERRTKICYGLNS 502 Query: 487 KAMSEHDMLPSEPVTIVLSQMGWVR---------SAKGHDIDAPGLNYKAGDSFKAAVKG 537 +E ++P E V I S G+++ +G + G+N D ++ + Sbjct: 503 TIDNEQ-LIPVETVVITRSSKGYLKRIPISAYKVQHRG-GVGVKGMNTYEDDDVESLIVC 560 Query: 538 KSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMA 597 ++ ++F + G+ Y I R PL +++ A ++ + +E D++ + + Sbjct: 561 STHSDLLFFTNYGKVYRI--------RAHQVPLGSRISKGIPA-INLISIEKDEKLMSLL 611 Query: 598 S----DAGYGFVCTFNDLVARNRA---------GKALITLPENAHVMPPVVIEDASDMLL 644 S D+GY F T LV R +A GK I L EN + VI+ A D + Sbjct: 612 SINDYDSGYFFFSTKKGLVKRVKASEFSRIQNNGKIAIKLTENDSLFK--VIKTAGDEEI 669 Query: 645 AI-TQAGRMLMF 655 I +G ++ F Sbjct: 670 YIGVSSGLLVRF 681 >UniRef50_A9GW54 DNA gyrase subunit A n=2 Tax=Proteobacteria RepID=A9GW54_SORC5 Length = 873 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 223/621 (35%), Positives = 348/621 (56%), Gaps = 53/621 (8%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 +++ + +YL+Y+M VI+ RA+P + DGLKPV RRI+Y+M+E + + KK AR V Sbjct: 13 VSIQDELRTSYLDYAMSVIIGRAIPDVRDGLKPVHRRILYSMNEQKIGPTGAHKKCARVV 72 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 GDVLGKYHPHGD A Y+A+V M Q FS RYPL+DGQGN+G+ D S AAMRYTESRLS+ Sbjct: 73 GDVLGKYHPHGDLAVYDALVRMGQTFSLRYPLIDGQGNYGSVDG-DSPAAMRYTESRLSR 131 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 + LL++L + T D+VPN+D + EP +LPA+ P +L+NG+ GIAVGMAT+IPPHNL E Sbjct: 132 MAVELLADLDKDTVDFVPNYDDSELEPSVLPAKFPQLLVNGSGGIAVGMATNIPPHNLGE 191 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA---- 243 + A IA+I P TL++LL +V GPD+PT +I ++ I + Y GRGS+ MR Sbjct: 192 IIDATIAIIRNPDVTLEELLHLVPGPDFPT-GGLIYGKSGIVQAYTTGRGSITMRGRSQV 250 Query: 244 --VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 K + +V + +P+QV+ AR++ +IA M+ K++ + ++RDESD E R+V+ Sbjct: 251 EKTMKGDREQLVFTEIPYQVNKARLVAKIAECMKEKRIEGISEVRDESDREG-MRIVVEL 309 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 + + + V+N L+ TDL+ ++ + +N+ +GRPAV +L + LS ++ RR+ V RR Sbjct: 310 KKD-IFPQVVLNQLYRLTDLQATFGV-INLSIANGRPAVLSLKDTLSHFIEHRREVVTRR 367 Query: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA--------------LMSRF 407 + L + + ++EGL +A +ID ++ IR +P A + R Sbjct: 368 CRFELRQAESQRELVEGLGMATSDIDRIVATIRASSDPDDARENLQKLPLRGLGEFLRRA 427 Query: 408 G----------------LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451 G L+E QA+AILE++L L LE K+ E EL + ++L+ IL Sbjct: 428 GRPEPECAEADTRGDYFLSERQAKAILEMRLSRLTGLEREKLAKEYGELSQTIERLRAIL 487 Query: 452 ASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVR 511 A + N++ EL+ +GD RR+ + E M D++ E + + +S G+++ Sbjct: 488 ADMGLLMNVIVMELEEIKARFGDKRRTEIVPAEAEIQM--EDLIQEEDMVVTISHAGYLK 545 Query: 512 SAKGHDIDAP--------GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA 563 A G+ + D ++ V F G+ + +P A Sbjct: 546 RTPTSTYRAQRRGGKGMVGMEAREEDWVSQLFVASTHSYVFFFSDKGKVFVKKVYEIPQA 605 Query: 564 --RGQGEPLTGKLTLPPGATV 582 +G + + + PG V Sbjct: 606 PRNAKGRAIVNFVGMEPGEKV 626 >UniRef50_A6DH72 DNA gyrase subunit A n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DH72_9BACT Length = 859 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 225/619 (36%), Positives = 349/619 (56%), Gaps = 37/619 (5%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 + + +AYL YSM V + RA+P + DGLKP RR+++AM +L L + + K AR VG Sbjct: 15 GIEKLLSDAYLQYSMSVNVGRAIPDVRDGLKPGMRRVLFAMDKLNLRKGSSYMKCARVVG 74 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 DV+GKYHPHGD + Y+ MV MAQ FS R L+DGQGN+G+ D S AA RYTE R+ + Sbjct: 75 DVIGKYHPHGDGSVYDTMVRMAQDFSMRGMLIDGQGNFGSID-GDSAAAYRYTECRMERL 133 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 +E LL++L + T D P FDG+ EP +LPAR PN+L+NGTTGI VGMAT IPPHNL EV Sbjct: 134 AEELLTDLDKNTVDMQPTFDGSQNEPTVLPARYPNLLVNGTTGIGVGMATSIPPHNLGEV 193 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA----V 244 A +AL+DQP T+++++ + GPD+PT A I IR++YE GRG V +R + Sbjct: 194 INATVALLDQPSITIEEMMQHLPGPDFPT-AGISIGFDGIRRLYETGRGGVHLRGRAEII 252 Query: 245 WKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 K +VI+ +P+ V+ ++++IA + NK + + L DES R+V+ ++N Sbjct: 253 EKNGREQIVITEIPYAVNKENMVKKIAELVNNKVITGISSLNDESSSRVGIRVVVGIKTN 312 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR-PAVKNLLEILSEWLVFRRDTVRRRLN 363 + V+N L+ T L S I + +D + P NL ++L +L R + + RR+ Sbjct: 313 AM-ATVVINQLYKHTQLAVS--IGCQFLVVDNKQPKTLNLKQLLQAYLDHRLEVITRRIK 369 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEAILEL 420 + LEK +R HILEGLL A +IDEVI+IIR N ++ L RF L+ QA+AIL++ Sbjct: 370 FELEKAERRAHILEGLLKAVDHIDEVIKIIRASTNREDAHNQLKERFELSNEQAKAILDM 429 Query: 421 KLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPL 480 +L L L ++ E EL K + +LA+ + +++K+EL + D+RR+ + Sbjct: 430 RLSQLTGLAIDELTAEYEELMKRIAHYRELLANRQMRLDVVKEELIEVRDKFADERRTEM 489 Query: 481 QEREEAKAMSEHDMLPSEPVTIVLSQMGWV------------RSAKGHDIDAPGLNYKAG 528 + E + ++ D++ TI +S G++ R KG G+ K Sbjct: 490 RPGE--RDINYEDLIARASATITISNEGYIKRVPTEIYRTQNRGGKG----VKGMETKDD 543 Query: 529 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHML 586 D K ++ ++F + GR + + +P A +G+ + L G V M+ Sbjct: 544 DFVKQLTTACTHDYIMFFTNFGRMHWLKVYDIPEATRVSKGKAMVNLLEFEKGEYVRAMI 603 Query: 587 ----MESDDQKLLMASDAG 601 ++ +D+ ++M++ G Sbjct: 604 SVDKVDDEDRFIMMSTRNG 622 >UniRef50_Q1UZ45 DNA gyrase subunit A n=2 Tax=Candidatus Pelagibacter ubique RepID=Q1UZ45_PELUB Length = 849 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 245/720 (34%), Positives = 405/720 (56%), Gaps = 77/720 (10%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 +++H+ ++YL+Y+M VI+ RALP + DGLKPV RRI++AM + G + S +F+KSAR V Sbjct: 15 ISMHDEMSSSYLSYAMSVIVSRALPDVRDGLKPVHRRILFAMYKGGYDWSKQFRKSARIV 74 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLS 126 GDV+GKYHPHGD + Y+A+V M Q FS PLV GQGN+G+ D DP AAMRYTE+RL+ Sbjct: 75 GDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDPA--AAMRYTETRLA 132 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 K S+ L+ ++ + T ++ N+D T +EP +LPA+ PN+L+NG GIAVGMAT IPPHNL Sbjct: 133 KVSQYLIDDIEKDTIEYKSNYDETEKEPSVLPAQYPNLLVNGAGGIAVGMATSIPPHNLG 192 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR---A 243 E+ +ALI+ + +L+ + GPD+PT +I + I+ Y GRGS ++R + Sbjct: 193 EIIDGTLALIENKDIKIKELMKHIPGPDFPT-GGVIIGKEIIKAGYNVGRGSFKIRGEIS 251 Query: 244 VWKKEDG--AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 V +++G +VI+++P+QV+ + + E+IA +R KK+ + D+RDES+ E R+ I Sbjct: 252 VEAQKNGRERLVITSVPYQVNKSVLNERIAQLVREKKIEGIKDIRDESNREG-IRVAIDL 310 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 R N V+ + + L+ T +E S+ N I +DG+P + +L E L+ +L FR D V ++ Sbjct: 311 R-NGVEPETIKRLLYKNTSIESSFGFNTLAI-VDGKPKICDLKEFLTNFLTFREDVVIKK 368 Query: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSR------------ 406 + L+K R HIL GL V+ N+D++I+IIR+ D+ K +L++ Sbjct: 369 TKFDLKKAEDRAHILIGLSVSVENLDKIIKIIRSSKTPDDAKKSLLNTKWKINKSLKLIS 428 Query: 407 ----------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQG---ILAS 453 + L++ Q AILEL+L+ KL + I + E++K D ++G I+ S Sbjct: 429 LVEDKKEKNLYSLSDPQVIAILELRLQ---KLTALGINEIEVEIKKLADLIKGYKKIINS 485 Query: 454 ERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDM---LPSEPVTIVLSQMGWV 510 ++++ N++ +EL+ + + RR+ + + A+ +D+ + E V I ++ G++ Sbjct: 486 KKELLNVISEELKTIKEKFAVPRRTKIID-----AILNYDIEETIQKESVIITVTLQGYI 540 Query: 511 ------------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPI 558 R KG G+ + DS + ++ V+F + G Y I Sbjct: 541 KRGALSSVKQQKRGGKGK----SGITTRDEDSVVQTLSVNTHTSVLFFSTEGLVYKIKAW 596 Query: 559 TLP--SARGQGEPLTGKLTLPPGATVDHML----MESDDQKLLMASDAGYGFV--CTFND 610 +P S +G+ L L L ++ ++ ESD + L + G V + D Sbjct: 597 KIPEGSTTSKGKSLFNILPLKNHQSISSIMPFPDEESDTKNLQIVFATAKGKVRKNSLED 656 Query: 611 LVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNK 670 + N AGK I L N ++ + +D D++L+ T+ G+ + F L ++ KG+ +K Sbjct: 657 FSSINSAGKIAIKLDPNDKIVGVEICKDDQDVMLS-TKNGKCIRFESKKL-RIFKGRSSK 714 >UniRef50_Q2JQA2 Type II DNA topoisomerase, A subunit n=2 Tax=Chroococcales RepID=Q2JQA2_SYNJB Length = 819 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 209/488 (42%), Positives = 301/488 (61%), Gaps = 19/488 (3%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 + +YL Y+M VI+ RALP + DGLKPV RRI+YAM ELGL ++K AR VGDVLGKY Sbjct: 11 QRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCARVVGDVLGKY 70 Query: 75 HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSEL-LL 133 HPHGD A Y+A+V M Q FS RYPLV G GN+G+ DD AAMRYTE RL++ S LL Sbjct: 71 HPHGDQAVYDALVRMVQDFSSRYPLVAGHGNFGSVDDDPP-AAMRYTECRLAELSHTALL 129 Query: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193 ++ + D++PNFDG+ EP +LPARLP +LLNG++GIAVGMAT+IPPHNL EV + Sbjct: 130 EQVSEEIVDFMPNFDGSQAEPTVLPARLPILLLNGSSGIAVGMATNIPPHNLGEVVDGLL 189 Query: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED---- 249 ALID P + ++LL + GPD+PT +I+ ++ IR Y GRGS+ +R V + E+ Sbjct: 190 ALIDHPDLSPEELLRWIPGPDFPTGGQILDTQG-IRAAYLTGRGSITLRGVARFEEIQPG 248 Query: 250 ------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 A+VIS P+QV+ A +E++A ++ + DLRDESD V+V Sbjct: 249 KGRHRRPALVISEFPYQVNKAAWIEKVAELANQDRISGIADLRDESDRSGIR--VVVELK 306 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLN 363 + V+ L+ T L+ ++ L + ++G P +L EIL +L FR T+ R Sbjct: 307 REANPQAVLQQLYKLTPLQSNFGAILLAL-VNGEPRQLSLKEILQHFLQFREATLNRMFR 365 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAEAILEL 420 L++V ++ + G+L+A +++ VIE++R + K L +R G T QAE IL + Sbjct: 366 AELQQVQRKAEEVAGMLLALADLEGVIELLRQAPDGTTAKAQLQTRLGCTPQQAETILAM 425 Query: 421 KLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPL 480 LR L LE ++ E ++L+ ++LQG+L+ RK+ N LKKEL+ + +GD RR+ + Sbjct: 426 PLRRLTGLERERLHQEHAQLQTRIEELQGLLSDRRKLLNYLKKELRHLKKTFGDPRRTQI 485 Query: 481 QEREEAKA 488 E +A Sbjct: 486 LSASELEA 493 >UniRef50_D1BTH4 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Actinomycetales RepID=D1BTH4_XYLCX Length = 855 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 207/474 (43%), Positives = 302/474 (63%), Gaps = 13/474 (2%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 E+++L Y+ VI RALP DGLKPVQRRI+Y M+++GL + KS+R +G+V+GK Sbjct: 27 ESSFLEYAYSVIYARALPDARDGLKPVQRRILYMMADMGLRPDRPYVKSSRVIGEVMGKL 86 Query: 75 HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLS 134 HPHGD A Y+A+V +AQ FS R PLVDG GN+G+ DD AA RYTE+RL+ S + + Sbjct: 87 HPHGDQAIYDALVRLAQDFSLRLPLVDGHGNFGSLDD--GPAAPRYTEARLAPPSTAMTA 144 Query: 135 ELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIA 194 L + D+VPN+D L +P++LP+ +PN+L+NG +GIAVGMAT++ PHNL EV A Sbjct: 145 GLDEDVVDFVPNYDNKLTQPEVLPSAIPNLLVNGASGIAVGMATNMAPHNLVEVVAAGQH 204 Query: 195 LIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED----- 249 L+ P TL+ ++ V GPD PT +I+ IR Y +GRG+ R RA + E+ Sbjct: 205 LLANPAATLEDVMRFVPGPDLPTGGKIVGLDG-IRDAYRSGRGTFRTRATARIENITPRR 263 Query: 250 GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMD 309 + I+ LP+ V +V+E+IA ++ KK+ V +++D +D + RLV+ ++ D + Sbjct: 264 RGITITELPYLVGPEKVVEKIADGVKAKKIQGVANVQDLTDRTHGMRLVVEVKTG-FDPE 322 Query: 310 QVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKV 369 V+ L+ TT LE S+ IN N+ + G+P LLE+L W+ R + VRRR YRL K Sbjct: 323 AVLEQLYRTTPLEDSFGIN-NVALVGGQPRTLGLLELLRVWVEHRIEVVRRRTAYRLGKR 381 Query: 370 LKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEAILELKLRHLA 426 +RLH++EGLL+A ++IDEVI++IR+ D+ A LM F L+E QA IL+L+LR L Sbjct: 382 KERLHLVEGLLLAIVDIDEVIQVIRSSDDAGIARARLMDVFDLSEPQATYILDLQLRRLT 441 Query: 427 KLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPL 480 K +++ EQSELEKE L+ IL S+ + ++ E+ A YG RR+ L Sbjct: 442 KFSRIELEKEQSELEKEIAALEEILGSDAVLRRVVSTEMGDVAATYGTPRRTVL 495 >UniRef50_Q7V9E4 DNA gyrase/topoisomerase IV, subunit A n=17 Tax=cellular organisms RepID=Q7V9E4_PROMM Length = 829 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 212/489 (43%), Positives = 309/489 (63%), Gaps = 19/489 (3%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 +ALH+ + +YL Y+M VI+ RALP DGLKPVQRRI++AM ELGL ++K AR V Sbjct: 9 IALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPYRKCARVV 68 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 GDVLGKYHPHGD A Y+A+V + Q FS R+P++DG GN+G+ DD AAMRYTE+RL+ Sbjct: 69 GDVLGKYHPHGDQAVYDALVRLVQNFSSRFPVLDGHGNFGSVDDDPP-AAMRYTETRLAS 127 Query: 128 YSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 + + LL E+G+ T D+ NFDG+ QEP +LPA+LP +LLNG +GIAVGMAT IPPHNL Sbjct: 128 IAHMALLDEIGEETVDFTANFDGSQQEPSVLPAQLPFLLLNGCSGIAVGMATSIPPHNLG 187 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 EV IALI +P + D+LL ++ GPD+PT EI+ I + Y GRGS+ MR V Sbjct: 188 EVVDGLIALIRKPDLSDDKLLGLIPGPDFPTGGEILLGTG-IHETYLKGRGSIPMRGVAH 246 Query: 247 KED----------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 E+ AVV++ LP+Q+S A +E++A + N K+ + D+RDESD E R Sbjct: 247 VEEIQPGKGRHRRSAVVVTELPYQLSKAGWIEKLADLVNNGKIGGIADIRDESDREG-MR 305 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 +V+ R + + + V+ L T L+ ++ L + ++G+P +L ++L +L +R Sbjct: 306 IVVELRRD-ANPENVLGDLHRRTSLQSNFGAILLAL-VNGQPQQLSLRKLLQTFLEYREL 363 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRN---EDEPKPALMSRFGLTETQ 413 TV RR N+ LEK RL ++EGL+ A + VI +I+ + LM + L E Q Sbjct: 364 TVIRRTNHALEKTKARLEVVEGLITALNALQAVIAMIQEAADAAAARARLMVQLDLNEKQ 423 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 A+A+L + LR L LE+ +R E EL+++++QLQ +L + M +L +EL+ + + Sbjct: 424 ADAVLAMPLRRLTSLEQSSLRQEAKELQEKQEQLQFLLENRESMLEVLIQELRQLKKRFN 483 Query: 474 DDRRSPLQE 482 + RR+ L E Sbjct: 484 NPRRTRLVE 492 >UniRef50_Q8CSN8 DNA topoisomerase 4 subunit A n=77 Tax=Bacteria RepID=PARC_STAES Length = 800 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 236/699 (33%), Positives = 390/699 (55%), Gaps = 38/699 (5%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 MS++ + L+L + + + YS Y+I +RALP + DGLKPVQRRI++AM G F Sbjct: 1 MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNF 60 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 119 +KSA+TVGDV+G+YHPHGDS+ Y+AMV ++Q + R+ L++ GN G+ D DP AAMR Sbjct: 61 RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPP--AAMR 118 Query: 120 YTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 179 YTE++LS+ SE LL ++ + T ++PN+D T EP +LPAR PN+L+NG+TGI+ G ATD Sbjct: 119 YTEAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATD 178 Query: 180 IPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSV 239 IPPHNL EV Q + IDQP T++QL+ ++GPD+PT I I+K YE G+G V Sbjct: 179 IPPHNLAEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGI-IQGIEGIKKAYETGKGKV 237 Query: 240 RMRAVWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENP 294 +R+ +E ++++ +P++V+ + ++++I +KK+ + ++RDE+D Sbjct: 238 VVRSRVDEEPLRSGRKQLIVTEIPYEVNKSSLVKKIDELRADKKVDGIVEVRDETDR-TG 296 Query: 295 TRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGL-DGRPAVKNLLEILSEWLVF 353 R+ I + + + + + N+L+ +DL+ SY N NM+ + +GRP + L EI+ +L Sbjct: 297 LRIAIELKKD-ANSESIKNYLYKNSDLQISY--NFNMVAISEGRPKLMGLREIIESYLNH 353 Query: 354 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLT 410 + + V R Y LE+ KR+HI+EGL+ A +DEVI +IRN K A L++ + T Sbjct: 354 QIEVVTNRTRYDLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEYDFT 413 Query: 411 ETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQ 470 E QAEAI+ L+L L + ++ E ELE +L+ IL + + ++K EL + Sbjct: 414 EAQAEAIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHEALLAVIKDELNEIKK 473 Query: 471 AYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG---LNYKA 527 + DR S ++ + + M+PSE V + L+Q G+++ +A G + K Sbjct: 474 KFKVDRLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGLKD 533 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHM 585 GD + V+ + GR I L R + G+ ++ + + V ++ Sbjct: 534 GDRLLKHESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVNV 593 Query: 586 LMESDDQKLLMASDAGYGFVCTFNDLVARN--------RAGKALITLP-ENAHVMPPVVI 636 E D ++A Y + T N ++ ++ R K LI + ++ + VV Sbjct: 594 YNEKD-----FKNEAFY-IMATKNGMIKKSSASQFKTTRFNKPLINMKVKDKDELINVVR 647 Query: 637 EDASDMLLAITQAGRMLMFPVSDLPQLS-KGKGNKIINI 674 ++ ++ +T G L + ++L + G K IN+ Sbjct: 648 LESDQLITVLTHKGMSLTYSTNELSDTGLRAAGVKSINL 686 >UniRef50_B9ZQ27 DNA gyrase, A subunit n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQ27_9GAMM Length = 823 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 213/570 (37%), Positives = 328/570 (57%), Gaps = 23/570 (4%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 L + +++ +Y+M VI DRALP DGLKPV RRI+Y+M +LG+ KKSAR V Sbjct: 18 LEIGNVMRSSFADYAMSVITDRALPDARDGLKPVHRRILYSMHQLGITHMVAHKKSARVV 77 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 GDVLGKYHPHGDSACY++ V MAQ ++ R+PL+DGQGN+G+ D + AAMRYTE RLSK Sbjct: 78 GDVLGKYHPHGDSACYDSAVRMAQHWAMRHPLIDGQGNFGSIDGDNA-AAMRYTEMRLSK 136 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 L +++ + T D+ NFDGT +EP++LP PN+L+NG+ GIAVGMAT +PPHNLRE Sbjct: 137 LGTRLFADIQKNTVDFRDNFDGTEREPEVLPLTYPNLLVNGSEGIAVGMATSVPPHNLRE 196 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 A A +A +D P+ T ++ + GPD+PT + I+ + + GRG+V++R+ W Sbjct: 197 TADAFLAWLDNPEITTREIAQHMPGPDFPTGGILHDLDGYIQAL-DTGRGAVKLRSQWTV 255 Query: 248 ED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 ED +VI +P+ V+ A+++EQIA +R KK+ V DLRDES+ + ++ + R Sbjct: 256 EDRPRGGSRLVIDQIPYAVNKAKLVEQIAELVREKKIEGVADLRDESNKKGIRIVLEIKR 315 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRL 362 + + + L T LE S R N+ M + P + ++ + R + ++RR Sbjct: 316 E--FEAEAIAFQLVTMTQLETSVRYNI-MALVGQTPMQLGVRDLFEHFRAHRIEVIQRRT 372 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEAILE 419 + L++ L RLHILEGLL+A +DE I IR + DE + L+ G+ TQA+AIL+ Sbjct: 373 QFDLDRALDRLHILEGLLMALDRLDETIATIRASADADEARGGLIDLLGIDVTQAQAILD 432 Query: 420 LKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSP 479 +KL+ L L+ IR E L E L+ ILA + +++ EL + ++R + Sbjct: 433 MKLQKLTGLQIQDIRDEHDRLTAEVADLRDILARSERQVEIMRTELLDLCDQHANERCTE 492 Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKA--------GDSF 531 + +S D++P E V ++ +Q G+++ D++ K D Sbjct: 493 ID--TSLSKVSAADLIPEEDVMLIGTQQGYLKRIAAKDMNRQNRGTKGRSIMSVGEDDLV 550 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLP 561 G S+ ++ + +G+ +AI +P Sbjct: 551 TTFHAGHSHDTLIALTDSGQVHAIKAYDIP 580 >UniRef50_A9KS51 DNA topoisomerase (ATP-hydrolyzing) n=4 Tax=Firmicutes RepID=A9KS51_CLOPH Length = 748 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 252/757 (33%), Positives = 404/757 (53%), Gaps = 83/757 (10%) Query: 1 MSDMAERLALHEFTE---NAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 57 M AE + +F+E ++ NY+M VIM RA+P + DGLKPVQRRI+Y+M ELGL+ Sbjct: 1 MKKEAENIIQLDFSEEMKTSFRNYAMSVIMARAIPDVRDGLKPVQRRILYSMIELGLDPK 60 Query: 58 AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 117 +KSAR VGD +GKYHPHGDS+ Y+A+V M +P+S + PLVDG GN+G+ D + AA Sbjct: 61 KPHRKSARIVGDTMGKYHPHGDSSIYDALVHMTEPYSMQIPLVDGHGNFGSIDGDGA-AA 119 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 MRYTE+RLS + LL L +G ++VPNFD + +EP +LPA LPN+L+NGTTGIAVGMA Sbjct: 120 MRYTEARLSDGAMTLLDHLDKGLVEFVPNFDESEKEPSVLPAMLPNLLINGTTGIAVGMA 179 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T++PPHN EV + IA ID P T + L+ + GPD+PT II S +IR IYE G G Sbjct: 180 TNMPPHNPSEVIEGVIAYIDNPDITTEGLMKYIPGPDFPTGGTIINSE-DIRNIYETGEG 238 Query: 238 SVRMRA---VWKKEDG--AVVISALPHQVSG--ARVLEQIAAQMRNKKLPMVDDLRDESD 290 +++RA + ++G +VI+ +P+ V+G +++E + M++K + D+RDES Sbjct: 239 RLKVRAKTEIEASDNGRKNIVITEIPYTVAGNKTKLVESLVDLMKDKVFDEIFDVRDESS 298 Query: 291 HENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEW 350 E R+VI + +R D++ ++N L+ T +E +Y +NL + D +P V L ++ E+ Sbjct: 299 KEG-IRVVIEVKKDR-DIENLLNGLYKKTSMEDTYGVNLLAVK-DQQPIVFKLKNLVGEF 355 Query: 351 LVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA-------- 402 + F+ + + + L+K KRL I++GL+ A ID +IEI+R K A Sbjct: 356 VSFQEELYTKEYEHLLDKANKRLEIVDGLIRATDVIDLIIEILRGSSSIKQAKDCLIHGN 415 Query: 403 -------------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQG 449 ++ TE QA+AIL + L L LE +++ E L +Q Q Sbjct: 416 TTEINFKTEASRKKAAKLDFTERQADAILAMPLSKLIGLEILRLHEENQSLLDSIEQYQS 475 Query: 450 ILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGW 509 IL +++++ ++K L+ + + R + L E A+ + E + E + I++ + G+ Sbjct: 476 ILGNKKELFKVIKSNLKEYKKQFNVPRHTVLANMEIAEYVEE---VKVEDIYILIDKFGY 532 Query: 510 VRSAKGHDIDAPGLNYKAGDSFK---AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ 566 +S +D ++ + D+ K VK K+ + + G Y + +P Sbjct: 533 TKS-----VDNTSISRVSEDNLKDFVHIVKMKNTDRLCLFTAQGNMYQVKAEKIP----- 582 Query: 567 GEPLTGKLTLPPGATVDHMLMESDDQKLLM--------ASDAGYGFVCTFNDLVA----- 613 K + T+ H L + D +++L+ S + F LV+ Sbjct: 583 ------KCKIKDKGTLIHNLCKVDKEEILLYIAFEDLFESQLLFTTKNGFIKLVSGIEFE 636 Query: 614 RNRAGKALITLPENAHVMPPVV-----IEDASDMLLAITQAGRMLMFPVSDLPQLSK-GK 667 NRA + L E HV+ + I + ++ +T+ L FP++++ +L K K Sbjct: 637 TNRAMISATKLEEADHVVSVLCLSAHTISNPDSKVILLTEDSLSLGFPLTEVSELKKTSK 696 Query: 668 GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGK 704 G K I + +D +A V P++ + GK Sbjct: 697 GVKGITLEK------KDKVAFATVALPETEFFEYQGK 727 >UniRef50_B5IIX4 DNA gyrase/topoisomerase IV, A subunit domain protein n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IIX4_9CHRO Length = 834 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 215/489 (43%), Positives = 306/489 (62%), Gaps = 19/489 (3%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 +ALH+ + +YL Y+M VI+ RALP DGLKPVQRRI++AM ELGL ++K AR V Sbjct: 23 IALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPYRKCARVV 82 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 GDVLGKYHPHGD A Y+A+V + Q F+ R+PL+DG GN+G+ DD AAMRYTE+RL+ Sbjct: 83 GDVLGKYHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPP-AAMRYTETRLAP 141 Query: 128 YS-ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 + E LL E+G T D+ PNFDG+ QEP +LPA+LP +LLNG TGIAVGMAT+IPPHNL Sbjct: 142 IAHEGLLDEIGNDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCTGIAVGMATNIPPHNLG 201 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 EV A IALI +P + ++L +V GPD+PT E++ S +R Y GRGS+ MR V Sbjct: 202 EVVDAMIALIRKPDLSDEKLFALVPGPDFPTGGEVLLSSG-VRDTYRLGRGSIPMRGVAH 260 Query: 247 KED----------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 E+ AVVI+ LP+Q+S A +E++A Q+ + K+ + D+RDESD E R Sbjct: 261 IEEVQPGKGRHRRSAVVITELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDESDREG-MR 319 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 +V+ R + + D V+ L T L+ ++ L + ++G+P +L +L E+L +R Sbjct: 320 VVVELRRD-ANADTVLAELQRRTALQSNFGAILLAL-VNGQPVQLSLRRLLQEFLDYREL 377 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEII---RNEDEPKPALMSRFGLTETQ 413 T+ RR + L + RL ++EGL+ A + EVI +I + + +L R L+E Q Sbjct: 378 TLIRRTRHALRRCEDRLEVVEGLIKALDALQEVIAMITAAADAASARASLQVRLDLSERQ 437 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 A+A+L + LR L LE+ +R E EL ER +L+ +L + + E +A + YG Sbjct: 438 ADAVLAMPLRRLTGLEQESLRQESEELRTERTRLRHLLDDRDSLLEAMVAEFRALKKRYG 497 Query: 474 DDRRSPLQE 482 RR+ L E Sbjct: 498 TPRRTRLVE 506 >UniRef50_B8DTB4 DNA gyrase subunit A n=23 Tax=Actinobacteridae RepID=B8DTB4_BIFA0 Length = 982 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 208/479 (43%), Positives = 300/479 (62%), Gaps = 13/479 (2%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 L E ++L Y+ VI RALP DG+KPVQRRIVY M ++ L + + KSAR VG+ Sbjct: 25 LAEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLLPTRPYMKSARVVGE 84 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 V+GK HPHGDSA YEAMV +AQPF+ R PLVDG GN+G+ DD AA RYTE+RL+ + Sbjct: 85 VMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLDDGP--AASRYTEARLAPAA 142 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 + +++ + T D+VPN+D L+EP +LP+ +PN+L+NG +GIAVGMAT++ HNL EV Sbjct: 143 LGMNADIDEDTVDFVPNYDNKLKEPTVLPSAIPNLLVNGASGIAVGMATNMATHNLGEVV 202 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED 249 AA ++ P TLD L+ V GPD+P I R IR YE GRG V R+ E+ Sbjct: 203 AAAKYVMKHPDATLDDLMQYVPGPDWPGGGI-IIGRQGIRDAYETGRGVVTTRSATHVEN 261 Query: 250 -----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 A+V++ LP+ V RVLE+I+ ++N KL + D +D N TR+VI ++ Sbjct: 262 LTARKKAIVVTQLPYMVGPERVLERISEGVKNHKLDGISGAIDLTDRHNGTRIVIELKTG 321 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 364 D V+ LF T L++++ IN N+ ++GRP L +L W+ RR +RRR + Sbjct: 322 -FDPAAVLAQLFKHTPLQENFAIN-NVALVNGRPHTLGLRSLLDVWIEHRRGVIRRRSEF 379 Query: 365 RLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEAILELK 421 R +K L RLH++EGLL+A ++IDEVI +IR+ D+ + A LMSRF L + QA+ IL+L+ Sbjct: 380 RRQKALDRLHLVEGLLLALVDIDEVIRVIRSSDDAEAAKNGLMSRFSLDDIQAQYILDLR 439 Query: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPL 480 LR L K+ +++ E+ EL+ +L+ IL S ++ ++ E+ YG RR+ L Sbjct: 440 LRRLTKMSRIELESERDELQSSITELERILGSAALLDGVVIDEMDKAVATYGTPRRTVL 498 >UniRef50_Q2S0H7 DNA gyrase, A subunit n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S0H7_SALRD Length = 910 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 223/616 (36%), Positives = 340/616 (55%), Gaps = 70/616 (11%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 + + E +++Y++YSM VI+ RALP + DGLKPV RR++Y M ELGL A +KKSAR V Sbjct: 11 INIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLTQGANYKKSARIV 70 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 G+VLGKYHPHGDS+ Y+ +V MAQ FS RYPL DGQGN+G+ D S AAMRYTE+R+++ Sbjct: 71 GEVLGKYHPHGDSSVYDTLVRMAQHFSMRYPLADGQGNFGSV-DGDSAAAMRYTEARMTR 129 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 +E +L+++G+ T D NFDGT++EP +LPA PN+L+NG GIAVGMAT IPPHNL E Sbjct: 130 IAEQMLTDIGKETVDTQENFDGTMEEPTVLPAAFPNMLVNGADGIAVGMATKIPPHNLGE 189 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 A +A ID P +D L+D + PD+PT II A + + Y GRG V MRA + Sbjct: 190 TIDATVAYIDDPDIEIDNLMDHLPAPDFPT-GGIIYGYAGVYEAYHTGRGRVVMRAKMHE 248 Query: 248 ED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 E+ A+V++ LP+QV+ +R +E+IA ++R +++ + DLRDESD + R+VI + Sbjct: 249 EEVRSGRDALVVTELPYQVNKSREVERIADRVRQERIEGIADLRDESDRDG-LRIVIELK 307 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRL 362 + + V N ++ + L+ ++ +N+ + + GRP V L + + ++ R + V RR Sbjct: 308 QG-ANAEIVKNQVYKHSRLQDTFGVNMVAL-VGGRPQVVTLKDAIRHYVDHRHEIVVRRT 365 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE-------------------------- 396 Y L + R HILEGL +A ++D VI IIR+ Sbjct: 366 EYDLAQAQDRAHILEGLTLALDHLDAVIAIIRHSPDTGTARQNLRAGRYPDALSDDDLRT 425 Query: 397 -----------DEPKPALMSRFG---------------LTETQAEAILELKLRHLAKLEE 430 DE + + + G LTE QA AIL L+L L LE Sbjct: 426 INVPLTPPGEADEEQDTVQALLGDEYEELVQQPDEGDWLTEAQANAILRLRLSRLTGLER 485 Query: 431 MKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMS 490 KI GE ++ ++ + Q IL S + L+K+EL + + D+RR+ + + Sbjct: 486 EKIIGEYEDIIEQIREYQRILNSRDRRMALIKEELLTVKERFDDERRTEIDYTGGDDIII 545 Query: 491 EHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTG 550 E D++ + V + ++ G + P Y+ ++G + F++ Sbjct: 546 E-DLIERQHVVVTITNQGLTKR-------TPIDTYRTQGRGGVGMRGTGKREDDFIEHLY 597 Query: 551 RSYAIDPITLPSARGQ 566 ++ D + L + +GQ Sbjct: 598 VCHSHDVLLLFTDKGQ 613 >UniRef50_C6CYI7 DNA gyrase, A subunit n=9 Tax=Bacillales RepID=C6CYI7_PAESJ Length = 817 Score = 366 bits (940), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 211/568 (37%), Positives = 336/568 (59%), Gaps = 24/568 (4%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 L E + + YS Y+I DRA+P + DGLKPVQRRI+YAM + ++KSA+TVGD Sbjct: 12 LEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSNNTPDKPYRKSAKTVGD 71 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 V+G YHPHGDS+ YE MV MAQP+ + L+DG GNWG+ DD + AAMRYTE+RLS + Sbjct: 72 VMGNYHPHGDSSIYEGMVRMAQPWKMGHVLIDGHGNWGSMDDDPA-AAMRYTEARLSPIA 130 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 +L ++ + T + NFD T +EP +LP+R PN+L+NGT+GI+ G AT+IPPH+LRE Sbjct: 131 MEILRDIDKRTVQFKDNFDNTTKEPVVLPSRYPNLLVNGTSGISAGFATEIPPHSLRETI 190 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED 249 A IA++ +P+ T+++L+ IV+GPD+PT II IR+ Y G+G + +R+ + ED Sbjct: 191 DACIAVMARPEMTVEELMGIVKGPDFPT-GGIIMGEEGIREAYTTGKGRIYIRSKVEIED 249 Query: 250 -----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 + I+ +P+QV +R++ + KK+ + ++RDES N R+V V Sbjct: 250 VRGGRQQITITEIPYQVVKSRLVSAMENIRLEKKVEGISEVRDESGR-NGLRIV-VELKK 307 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR-PAVKNLLEILSEWLVFRRDTVRRRLN 363 D + ++ +L TDL+ +Y N NM+ + + P + +IL+ ++ +++ V R Sbjct: 308 EADANGILAYLLKKTDLQVTY--NFNMVAIVNKAPQQLGIKQILNAYINHQKEVVTHRTQ 365 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEII---RNEDEPKPALMSRFGLTETQAEAILEL 420 Y LEK +R H++EGL+ A +DEVI I +N + + L++++G +E QA+AIL L Sbjct: 366 YELEKAEERAHVVEGLVKALNILDEVIATIKASKNRADAQNNLVAKYGFSERQADAILTL 425 Query: 421 KLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPL 480 +L L LE + E E +K+ L+ IL SE+K+ ++K EL + YG DRRS + Sbjct: 426 QLYRLTNLEITSLEKEWKETQKKIAYLRSILESEKKLLGVIKDELTEIREKYGIDRRSSI 485 Query: 481 QEREEAKAMSEHDMLPSEPVTIVLSQMGWVR-------SAKGHDIDAPGLNYKAGDSFKA 533 + E ++ M+ SE V + LS+ G+++ + G D+ G+ K GD+ + Sbjct: 486 RGEVEELKVNLEVMVQSEDVIVTLSEEGYMKRTSMLSFTRSGGDLQTAGV--KEGDAISS 543 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLP 561 + + ++ G+ Y + +P Sbjct: 544 VYEVNTIDNLLLFTRKGQYYMLPVHQIP 571 >UniRef50_O83051 DNA gyrase subunit A n=6 Tax=Bacteria RepID=GYRA_TREPA Length = 813 Score = 366 bits (939), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 239/765 (31%), Positives = 409/765 (53%), Gaps = 54/765 (7%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 +++ + AY++YSM VI+ RALP + DGLKPV RRI+YAM E GL S +K A+ V Sbjct: 15 ISIETEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYAMEEKGLRFSGPTRKCAKIV 74 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGA-PDDPKSFAAMRYTESRLS 126 GDVLG +HPHGD++ Y+A+V + Q FS RYP++ QGN+G DP AA RYTE++++ Sbjct: 75 GDVLGSFHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTIGGDPP--AAYRYTEAKMA 132 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 + +E ++ ++ + T +VPNFD + EP +LP R P +L NG++GIAVGM T++PPHNLR Sbjct: 133 RIAESMVEDIKKETVSFVPNFDDSDVEPTVLPGRFPFLLANGSSGIAVGMTTNMPPHNLR 192 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 E+A A A I+ P ++ +L D + GPD+PT II + IR+ YE GRG + +RA + Sbjct: 193 EIAAAISAYIENPNLSIQELCDCINGPDFPT-GGIIFGKNGIRQSYETGRGKIVVRARFT 251 Query: 247 KEDGA-----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 E + ++ + +P+QV+ ++ +I R K + + ++ DE+ R+V+ Sbjct: 252 IETDSKGRDTIIFTEVPYQVNTTMLVMRIGELARAKVIEGIANVNDETSDRTGLRIVVEL 311 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 + V+NHLFA T L+ S+ + +N+ ++GRP + L +++ ++ R D V RR Sbjct: 312 KKG-TPAQVVLNHLFAKTPLQSSFNV-INLALVEGRPRMLTLKDLVRYFVEHRVDVVTRR 369 Query: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEAIL 418 ++ L K +R+H++ L+ A ID++I +IR N + K L +F QA+AI+ Sbjct: 370 AHFELRKAQERIHLVRALIRALDAIDKIITLIRHSQNTELAKQRLREQFDFDNVQAQAIV 429 Query: 419 ELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRS 478 +++++ L LE +R E +L + L+ +L S +K+ ++KKE + A +GDDRR+ Sbjct: 430 DMQMKRLTGLEVESLRTELKDLTELISSLEELLTSPQKVLGVVKKETRDIADMFGDDRRT 489 Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV------------RSAKGHDIDAPGLNYK 526 + E + + D + E + I++S +G++ R KG + N Sbjct: 490 DIVS-NEIEYLDVEDFIQKEEMVILISHLGYIKRVPVSAYRNQNRGGKG----SSSANLA 544 Query: 527 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-SARG-QGEPLTGKLTLPPGATVDH 584 A D ++ V+FV S GR+Y + +P S R +G + L + + Sbjct: 545 AHDFISQIFTASTHDYVMFVTSRGRAYWLKVYGIPESGRANRGSHIKSLLMVATDEEITA 604 Query: 585 MLM---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASD 641 ++ S+ + MA+ G T ++ V G + L ++ V+++D + Sbjct: 605 IVSLREFSNKSYVFMATARGVVKKVTTDNFVNAKTRGIIALKLSGGDTLVSAVLVQDEDE 664 Query: 642 MLLAITQAGRMLMFPVSDLPQLSKGKGNKI-INIPSAEAARGEDGLAQLYVLPPQSTLTI 700 ++L IT+ G+ L ++ ++ + I I + S ED +A + + Q + I Sbjct: 665 VML-ITRQGKALRMSGREVREMGRNSSGVIGIKLTS------EDLVAGVLRVSEQRKVLI 717 Query: 701 HV----GKR------KIKLRPEELQKVTGERGRRGTLMRGLQRID 735 GKR + R QK+ + R+G ++ L +D Sbjct: 718 MTENGYGKRVSFSEFSVHGRGTAGQKIYTQTDRKGAIIGALAVLD 762 >UniRef50_C7XU56 DNA gyrase, A subunit n=16 Tax=Lactobacillales RepID=C7XU56_9LACO Length = 843 Score = 365 bits (937), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 253/758 (33%), Positives = 406/758 (53%), Gaps = 48/758 (6%) Query: 1 MSD-MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK 59 MSD E L L + + YS +I +RALP I DGLKPVQRRI++AM++ G Sbjct: 1 MSDNKIEELTLEQLMGERFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 60 Query: 60 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAM 118 F+KSA++VG+V+G +HPHGDS+ YEA+V ++Q + R PL++ GN G+ D DP AAM Sbjct: 61 FRKSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPA--AAM 118 Query: 119 RYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMAT 178 RYTE+RLSK + L+L ++ + T + NFD T +EP +LPAR+PN+ +NG TGI+ G AT Sbjct: 119 RYTEARLSKIAGLMLRDIDKDTVEMTLNFDDTEKEPTVLPARIPNLFVNGATGISAGYAT 178 Query: 179 DIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGS 238 +IPPHNLRE+ QA I L+ P+ LD L+ V GPD+PT II IRK YE GRG Sbjct: 179 EIPPHNLRELIQALIYLLKHPEAFLDDLMTYVPGPDFPT-GGIIQGVDGIRKAYETGRGR 237 Query: 239 VRMRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHEN 293 V +RA E+ ++++ +P+ V+ A+++++I NKK+ + + RDE+D Sbjct: 238 VILRANTTIEELRGGRQQIIVTEIPYGVNKAQLVKRINDLRLNKKVEGISEARDETDRSG 297 Query: 294 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLV 352 R+ I + N D + ++N+L TDL+ +Y N NM+ +D RP L L +L Sbjct: 298 -LRIAIELKRN-ADANGILNYLLKNTDLQINY--NFNMVAIDNQRPMRVGLKHYLKSYLA 353 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGL 409 F+++ + RR + L K RLHI+EGL+ A +D+VI+ IR N + L++ + Sbjct: 354 FQQEIITRRTQFNLHKAQTRLHIVEGLIKALSILDQVIKTIRASKNRKDATQNLVNEYQF 413 Query: 410 TETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADA 469 T+ QAEAI+ L+L L + +R EQ L + IL + ++N +L KE +A Sbjct: 414 TQPQAEAIVALQLYRLTNTDVTDLRDEQQRLNDSIAEYNKILNDQNELNRVLVKEFKAID 473 Query: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-----RSAKGHDIDAPGLN 524 + +G DR++ +++ + + +P E V +++S G++ RS K ++ GL Sbjct: 474 KQFGSDRKTQIEKHIQKLTVDTKVTVPDEEVVVLVSHAGYIKRTSLRSFKASVLEENGLR 533 Query: 525 YKAGDSFKAAVKGKS--NQPVVFVDSTGRSYA-IDPITLPSARGQGEPLTGKLTLPPGAT 581 D + ++ S N +F + Y + +T + GE ++ + L Sbjct: 534 ---EDDYPLLIQRASTLNHLFMFTNQGHVIYRPVHELTDAKWKETGEHISQSIGLADDEE 590 Query: 582 VDHMLMESDDQ---KLLMASDAGYGFVCTFNDLV----ARNRAGKALITLPENAHVMPPV 634 + L+ + + ++ ++ G T DL ++RA + +A ++ Sbjct: 591 IIKALIFENLELPGTMIFSTSDGQVKQTTIQDLKPGSRYKSRASVVMKLKDASARMINAE 650 Query: 635 VIEDASD--MLLAITQAGRMLMFPVSDLP-QLSKGKGNKIINIPSAEAARGEDGLAQLYV 691 E + L AI++ G L F V+++P Q ++ G + IN+ + +D L L Sbjct: 651 YYEPQAQNVSLTAISKHGYGLRFDVAEVPTQGTRTAGVRAINL------KDDDELVNLVQ 704 Query: 692 LPPQSTLTIHVGKRKIK-LRPEELQKVTGERGRRGTLM 728 L I + K +R EL+ G R RRG L+ Sbjct: 705 TADDDRLAIMTQRGAFKEMRANELE--VGSRARRGVLV 740 >UniRef50_B6BPL3 DNA gyrase, A subunit n=3 Tax=Bacteria RepID=B6BPL3_9RICK Length = 859 Score = 364 bits (935), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 243/717 (33%), Positives = 401/717 (55%), Gaps = 71/717 (9%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 +++H+ ++YL+Y+M VI+ RALP I DGLKPV RRI+YAM + G + S +F+KSAR V Sbjct: 15 ISMHDEMSSSYLSYAMSVIVSRALPDIRDGLKPVHRRILYAMYKGGYDWSKQFRKSARIV 74 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLS 126 GDV+GKYHPHGD + Y+A+V M Q FS PLV GQGN+G+ D DP AAMRYTE+RLS Sbjct: 75 GDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDPA--AAMRYTETRLS 132 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 K S+ L+ ++ + T + N+D T +EP +LPA+ PN+L+NG GIAVGMAT IPPHNL Sbjct: 133 KVSQYLIDDIEKNTISFKSNYDETEKEPTVLPAQYPNLLVNGAGGIAVGMATSIPPHNLG 192 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR---A 243 E+ +ALID + +L+ V GPD+PT +I + I+ Y NGRGS ++R + Sbjct: 193 EIINGTLALIDNKDIKIRELMKYVPGPDFPT-GGVIIGKDIIKHGYNNGRGSFKIRGEVS 251 Query: 244 VWKKEDG--AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 V ++G +VI+++P+QV+ + + E+IA +R KK+ + D+RDES+ E R+ I Sbjct: 252 VESLKNGRERLVITSIPYQVNKSVLNERIAQLVREKKIEGIKDIRDESNREG-IRVAIDL 310 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 R N V+ + + L+ T +E S+ N I + G+P L + LS +L FR D V ++ Sbjct: 311 R-NGVEPETIKRQLYKNTQIESSFGFNTLAI-VQGKPKTCTLKDFLSNFLSFREDIVIKK 368 Query: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------LMS 405 + L+K +R HIL GL V+ N+D++I+IIR+ P+ A L+S Sbjct: 369 TKFDLQKAEERAHILIGLSVSVENLDKIIKIIRSSKTPEDAKQAILKTKWKINKSQKLIS 428 Query: 406 ---------RFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERK 456 + L+E Q AILEL+L+ L L +I E +L + + + I++S+++ Sbjct: 429 LVEGKKGKGLYSLSEPQVIAILELRLQKLTALGINEIEVEIKKLAELIARYKKIISSKKE 488 Query: 457 MNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDM---LPSEPVTIVLSQMGWV--- 510 + ++ +EL+ + + RR+ + + A+ +D+ + + V I ++ G++ Sbjct: 489 LLKVISEELKNIKEKFAVPRRTKIID-----AVLNYDIEETIQKQSVIITVTLQGYIKRG 543 Query: 511 ---------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP 561 R KG G+ + DS + ++ V+F + G Y + +P Sbjct: 544 SLDGVKQQKRGGKGK----SGITTRDQDSVVQTLSVNTHTSVLFFSTEGLVYKVKAWKIP 599 Query: 562 --SARGQGEPLTGKLTLPPGATVDHML----MESD--DQKLLMASDAGYGFVCTFNDLVA 613 S+ +G+ L L L ++ ++ E+D + +++ A+ G + D + Sbjct: 600 EGSSSSKGKSLFNILPLKSHQSISSIMPMPENETDLKNYQIIFATAQGKVRKNSLEDFSS 659 Query: 614 RNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNK 670 N +GK + L N ++ + +D D++L+ T+ G+ + F L ++ KG+ +K Sbjct: 660 INASGKIAMKLDNNDKIVGVKICQDDQDIILS-TKFGKCIRFEAKKL-RVFKGRSSK 714 >UniRef50_B8BXG7 DNA topoisomerase IV, ATP/GTP binding site n=1 Tax=Thalassiosira pseudonana RepID=B8BXG7_THAPS Length = 820 Score = 363 bits (933), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 260/762 (34%), Positives = 408/762 (53%), Gaps = 77/762 (10%) Query: 19 LNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHG 78 + Y++ +I+ RALP DG+KPV RRI+YAM+ LGL+ S ++K AR VG+VLGKYHPHG Sbjct: 1 MQYALSIILGRALPDARDGMKPVHRRILYAMNGLGLSPSGSYRKCARVVGEVLGKYHPHG 60 Query: 79 DSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKY-SELLLSEL 136 D+A Y+A+V +AQPFS PL+DG GN+G+ D DP AAMRYTE RL++ +E LL ++ Sbjct: 61 DTAVYDALVRLAQPFSTNIPLIDGHGNFGSIDNDPA--AAMRYTECRLTRIAAETLLDDI 118 Query: 137 GQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALI 196 T +++PNFDG+ EP +LPA++P +LLNG GIAVGMAT++PPHNL E+ A +AL Sbjct: 119 LMDTVEFLPNFDGSEYEPSVLPAKVPILLLNGGAGIAVGMATNVPPHNLGELMDACVALT 178 Query: 197 D-----QPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED-- 249 + T +LL I+ PD+PT A II ++ R +Y G G V MRAV E+ Sbjct: 179 KGRNEGGEEVTDGKLLQIIPAPDFPTGACII-GKSGSRSLYTTGNGGVVMRAVMHLEEVP 237 Query: 250 ----------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 A++++ LP+QV+ A +LE+IA + KKL + DLRDESD + R+VI Sbjct: 238 TSSGKKKSTRNAIIVTELPYQVNKAALLERIAILVNEKKLEGIADLRDESDRDG-IRMVI 296 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRIN-LNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + + V V N+L T L+ ++ N L + G P L E L +L FR T+ Sbjct: 297 ELKRDAV-AAVVQNNLLKKTSLQTTFSGNFLALFGGGTNPQRFTLREALDCFLDFRFQTI 355 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRN---EDEPKPALMS----RFGLTE 411 R + ++L+KV R HI+ GLL+A + DEVI I+RN + + ALMS + GL+ Sbjct: 356 RNKCAFQLDKVENRAHIVAGLLIALESTDEVIAIVRNAPDQASARAALMSTDNPKLGLSS 415 Query: 412 TQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQA 471 QA+A+L+L+L L +L K+ E+ L++ + L+ +L ++ + + + +E A + Sbjct: 416 AQADAVLKLQLGQLTRLNGDKLNDEKKTLDESQTNLRNLLTNDAAVRDTMLEEFMAMKKR 475 Query: 472 YGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSA--KGHDIDAPGLNYKAGD 529 +G R++ + EE KA + D++ +E IV+++ G+++ K + G K G Sbjct: 476 FGTPRKTKILPDEEDKA--DIDLVQNERSVIVVTRGGYIKRMPLKTFESQNRGTRGKRGT 533 Query: 530 S--------FKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPG 579 S + V+ +G +Y + +P +G P+ L + Sbjct: 534 SNTISDDNAVAHCFTCNDHDTVLMTTQSGVAYGLRAYQVPEGGRTARGAPIPSVLPVKSD 593 Query: 580 ATVDHMLMESDDQK---LLMASDAGYGFV-----CTFNDLVARNRAGKALITLPENAHVM 631 + +L S+ K +++A++ YG++ F L R G + TL + + Sbjct: 594 DVITSVLPVSEFSKNEFIVLATE--YGWIKKTPLAAFEKLTQR---GLIIATLADGDRLN 648 Query: 632 PPVVIEDASDMLLAITQAGRMLMFPVSDL-PQLSKGKGNKIINIPSAEAARGEDGLAQLY 690 D D+L+ T+ G+ F +DL P +G K + + D +A + Sbjct: 649 WCEKCTDNDDILVGSTR-GQATRFKAADLRPTARTSRGVKSMTLKKG------DTIADMN 701 Query: 691 VLPPQSTLTIHV-----GKRKIKLRPEELQKVTGERGRRGTL 727 VL + + V GKR + EE + T RG G + Sbjct: 702 VLRKEDKFVLVVTTEGYGKRVLT---EEFR--TTARGGSGVI 738 >UniRef50_Q2NAD1 Type IIA topoisomeraseA subunit n=30 Tax=Alphaproteobacteria RepID=Q2NAD1_ERYLH Length = 931 Score = 363 bits (931), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 239/715 (33%), Positives = 373/715 (52%), Gaps = 77/715 (10%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 ER+ + + + +YL+Y+M VI+ RALP + DGLKPV RRI++A E G A ++KSA+ Sbjct: 5 ERIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASKEGGFVAGRPYRKSAK 64 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 VGDV+G YHPHGDSA Y+A+ M Q +S R PL+DGQGN+G+ D P A+MRYTE+RL Sbjct: 65 IVGDVMGNYHPHGDSAIYDALARMTQDWSLRVPLIDGQGNFGSMD-PDPPASMRYTEARL 123 Query: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 +K + LL +L + T D+ N+DG+L+EP++LPAR PN+L+NG GIAVGMAT++PPHNL Sbjct: 124 AKVANALLDDLDKDTVDFSDNYDGSLKEPQVLPARFPNLLVNGAGGIAVGMATNVPPHNL 183 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245 EV +A I P T ++L+ + GPD+PT A +I +A R Y GRGSV MRA Sbjct: 184 GEVIDGCLAFIANPAITSEELMQYIPGPDFPT-APLILGQAGARAAYTTGRGSVLMRARH 242 Query: 246 KKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 + E+ ++V +++P+QV + ++E+IA + K++ + D+RDES E +V + Sbjct: 243 EIEEKRGDRKSIVFTSIPYQVGKSGLVEKIADAAKEKRIEGISDIRDESSREGVRVVVDL 302 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360 R ++ V+N ++ T + S+ N+ I GRP V L +I+ ++ FR + + R Sbjct: 303 KRDASPEV--VLNQIWRYTPAQASFPANMLAIK-GGRPEVLTLRDIVQAFVSFREEVITR 359 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSR----------- 406 R + L K +R H+L GL+VA N+DEV+ +IR P+ A L ++ Sbjct: 360 RTKFELNKARERAHVLLGLVVAVSNLDEVVAMIRGSSNPQIAREKLRAKLWPIGDIAQYI 419 Query: 407 ----------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450 + L+E Q +AIL+L+L L L +I E EL E ++ I Sbjct: 420 QLIEAIEPTADQEGGTYQLSERQVKAILDLRLHRLTALGRDEIGDELKELASEIEEYLSI 479 Query: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510 LA K+ +L+ EL Y R S + + + + D++ E + + ++ G++ Sbjct: 480 LADRGKLFGVLQDELVEIKDEYATPRVSEIAPAWD--GLEDEDLIAREDMVVTVTHGGYI 537 Query: 511 ------------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPI 558 R KG G+ K D+ ++ PV+F + GR Y + Sbjct: 538 KRTPLATFRAQARGGKGRS----GMATKDEDAVVELFVTSTHNPVLFFTNLGRVYRMKVW 593 Query: 559 TLP--SARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNR 616 LP S +G P+ L L V ++L +D++ S A V + R Sbjct: 594 KLPEGSPTTKGRPMVNLLPLGDDERVTNVLSLPEDEE----SWAALNIVFATEQGMVRRN 649 Query: 617 AGKALITLPENAHVMPPVVIEDASDMLLAI------------TQAGRMLMFPVSD 659 + A +P V E D L+ + + AG+ + F +D Sbjct: 650 SMDAFTNVPTGGKYAMGFV-EGTGDRLIGVELLSEDQEIFLASDAGKAIRFAATD 703 >UniRef50_UPI0001B9EC7F DNA topoisomerase IV, A subunit n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9EC7F Length = 819 Score = 362 bits (929), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 234/707 (33%), Positives = 387/707 (54%), Gaps = 41/707 (5%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 L E + + YS Y+I DRA+P + DGLKPVQRRI+YAM + G ++KSA+TVGD Sbjct: 12 LEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGD 71 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 V+G YHPHGDS+ YE MV MAQP+ + LVDG GNWG+ DD + AAMRYTE+RLS + Sbjct: 72 VMGNYHPHGDSSIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDPA-AAMRYTEARLSPIA 130 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 LL ++ + T + NFD T +EP +LP+R PN+L+NG +GI+ G AT+IPPHNLREV Sbjct: 131 MELLRDIEKRTVLFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIPPHNLREVI 190 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA--VWKK 247 A IA++ +P+ LD+++ ++GPD+PT I+ + Y G+G V +R+ V + Sbjct: 191 DACIAVMQKPEIELDEIMTFIKGPDFPTGGIIMGGEGIL-DAYRTGKGRVYLRSKTVIES 249 Query: 248 EDGA---VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 G +VI+ +P+QV +R++ + KK+ + ++RDES E ++V Sbjct: 250 LRGGKQQIVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLR--IVVELKK 307 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR-PAVKNLLEILSEWLVFRRDTVRRRLN 363 D + ++ +LF TDL+ +Y N NM+ + + P L +LS ++ +R+ V R Sbjct: 308 DADANGILAYLFKKTDLQITY--NFNMVAIVNKTPQQLGLKAMLSAYIDHQREVVTHRTQ 365 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEII---RNEDEPKPALMSRFGLTETQAEAILEL 420 + LEK R H+LEGL+ A +DEVI I +N + + L FG TE QA++IL L Sbjct: 366 FELEKAEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLQWMFGFTERQADSILTL 425 Query: 421 KLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPL 480 +L L LE ++ E EL K+ + L+ IL S++K+ +++KEL + YG DRRS + Sbjct: 426 QLYRLTNLEIHSLQKELDELTKKIEGLRAILDSDKKLIGVIRKELIEIREKYGIDRRSVI 485 Query: 481 QEREEAKAMSEHDMLPSEPVTIVLSQMGWVR-------SAKGHDIDAPGLNYKAGDSFKA 533 QE E ++ ++ +E V + LS G+++ + G ++++ G+ K GD Sbjct: 486 QEEVEEIKVNLEVLVNAEDVLVTLSNEGYIKRTSMLSFTRSGGELESSGV--KEGDYITR 543 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHML----- 586 + + + ++ S G+ + + +P + + G + + +P DH++ Sbjct: 544 LFEVNTLENLLIFTSRGQYFLLPVHQVPEYKWKDAGTAIVNVIQVPKE---DHIVSVIPV 600 Query: 587 --MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLL 644 + + L+ S G + V + R+G + VV+ D++ ++ Sbjct: 601 SNFDEAGKSLVFVSRKGQVKRTDLKEYVTK-RSGAVAAAKVAAEDSIIQVVMSDSNKDIV 659 Query: 645 AITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYV 691 I++ G + F ++ + + G + + G++ +A L+V Sbjct: 660 LISKEGMSIRFNEQEVNAMGRVSG----GVRGIQLRDGDEVVAALWV 702 >UniRef50_C7MEZ8 DNA gyrase subunit A n=21 Tax=Actinobacteridae RepID=C7MEZ8_BRAFD Length = 943 Score = 362 bits (929), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 242/728 (33%), Positives = 386/728 (53%), Gaps = 46/728 (6%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 D ++ L+ + +YL+Y+M VI+ RALP + DGLKPV RRIVYAM + G F K Sbjct: 68 DRITQIDLNHEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRIVYAMFDGGYRPDRSFSK 127 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 A+ VG+V+G YHPHGDSA Y+AMV + QP+S RYPL+ GQGN+G+ D + AA RYTE Sbjct: 128 CAKVVGEVMGNYHPHGDSAIYDAMVRLVQPWSMRYPLILGQGNFGSAGDDGA-AAPRYTE 186 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +++ + L+ ++ Q T D N+D T+ EP +LPAR PN+L+NG+ GIAVGMAT+IPP Sbjct: 187 CKMAPLALELVRDIEQDTVDMQGNYDNTVDEPTVLPARFPNLLVNGSAGIAVGMATNIPP 246 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDI----VQGPDYPTEAEIITSRAEIRKIYENGRGS 238 HNLREVA A L+ + T +LL+ ++GPD+P+ A I+ + I Y GRGS Sbjct: 247 HNLREVADAVQWLLKNHEATKPELLEACLQRIKGPDFPSGATIVGTSG-IEDAYRTGRGS 305 Query: 239 VRMRAVWKKED----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENP 294 + RAV E+ ++V++ LP+QV+ + +IA ++ K+ + D+ DE+ Sbjct: 306 ITQRAVVSTEEINGRMSLVVTELPYQVNPDTLARKIAEMVKLGKIQGIADITDETSGRTG 365 Query: 295 TRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGL-DGRPAVKNLLEILSEWLVF 353 RLVI + + V V+N+L+ T L++++ + NM+ L +G P ++ + EW Sbjct: 366 QRLVITLKRDAV-AKVVLNNLYKHTQLQENF--SANMLALANGVPRTLSIDSFVREWTKH 422 Query: 354 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLT 410 + D + RR +RL K +++HI G L A +DEVI +IR DE + LM + Sbjct: 423 QIDVIVRRTKFRLRKAEEQIHIFRGYLKALDALDEVIALIRRSPDVDEARTGLMDLLEID 482 Query: 411 ETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQ 470 E QA AIL ++LR LA LE KI E L+ ++ ILA ++ +++ +EL Sbjct: 483 EIQANAILAMQLRRLAALERQKIIEEHDRLQALIEEYTAILADPQRQRDIVSEELAEIVD 542 Query: 471 AYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------G 522 +GDDRR+ + A M D++P E + + +++ G+V+ + A G Sbjct: 543 RFGDDRRTEILPF--AGDMEMEDLIPEEDMVVTITRGGYVKRTREDQYRAQKRGGKGVRG 600 Query: 523 LNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGA 580 + + D + +++ ++F + GR Y LP A +G+ + + P Sbjct: 601 ASLREDDVVEHFFTTTTHRWLLFFTNQGRVYRAKGYELPEAPRDAKGQHVANLMAFQPDE 660 Query: 581 TVDHMLM---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL-----PENAHVMP 632 + +L D Q L++A+++G + G I L PE P Sbjct: 661 NIASVLAIDSYEDAQHLVLATESGLVKKTPMPAFDSSRTGGIIAINLRDIDGPEGPQ--P 718 Query: 633 PVVIE----DASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQ 688 VI ++ D +L +++ G+ + FP D G+ + + R +D L Sbjct: 719 DRVISARAVNSDDEILLVSRNGQSVRFPADDGTLRPTGRATSGV---TGMKFRHQDTLLA 775 Query: 689 LYVLPPQS 696 + V+ P S Sbjct: 776 MDVIRPDS 783 >UniRef50_C3CV72 DNA topoisomerase n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CV72_BACTU Length = 740 Score = 360 bits (925), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 233/755 (30%), Positives = 407/755 (53%), Gaps = 51/755 (6%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 M E ++ + ++++++Y++ V+ DRALP + DGLKPV RRI+YAM +LG+ + Sbjct: 1 MGGKIETISYSKEMKSSFIDYALTVVTDRALPDVRDGLKPVHRRILYAMGDLGMYPDKAY 60 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VG+V+GKYHPHGDSA YE+MV AQ F PL+DG GN+G+ D S AAMRY Sbjct: 61 KKSARIVGEVIGKYHPHGDSAVYESMVKQAQDFVKNAPLIDGHGNFGSVDGD-SAAAMRY 119 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RLS + ++ +L +G D+ NFD + +EP +LPA++PN+L+NG GIAVGMA Sbjct: 120 TEARLSPVAMEMIQDLSKGVVDFRDNFDASEREPVVLPAKVPNLLVNGGVGIAVGMAYKT 179 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPH + V IA D+ ++ L+DI++ PDYP+ IIT++ E+R +Y G G Sbjct: 180 PPHGVNSVVDTLIAYADKQDIDIESLIDIIEAPDYPS-GGIITNKNELRDLYRTGIGKAV 238 Query: 241 MRAVWKKEDGA-----VVISALPHQVSGAR--VLEQIAAQMRNKKLPMVDDLRDESDHEN 293 +RA ED +V+ +P+ SG++ + ++ + KKL + ++ DESD + Sbjct: 239 IRAKIDIEDAGYGRKNLVVKEIPYPYSGSKTNLTYKLITMVIEKKLEEIVNVTDESDKDG 298 Query: 294 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVF 353 R+V+ + VD+D ++N L++ T L+ S ++ ++G P NL + + F Sbjct: 299 -IRIVLEVKKG-VDIDNLLNKLYSKTPLQSSESYQY-LVLVNGVPTTINLKDYCKHYFDF 355 Query: 354 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------- 402 +++ R+R Y L K R ILEGL+ A +D +IE++R + K A Sbjct: 356 QKEITRKRYEYLLSKAQVRKEILEGLVKAEEMMDTIIEMLRGAKKSKEAKVCLMEGNTES 415 Query: 403 ----------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILA 452 + +F TE QA+AIL+++L+ L LE ++ E E+ E ++ + +L Sbjct: 416 ISFKTKKHENIAKKFAFTEKQAQAILDMRLQKLIGLEVEQLNQEYKEVLAEMEEYELVLG 475 Query: 453 SERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS 512 SE++M ++KK L+ + +G +RR+ +QE++ + + E + E V +++ + G+ +S Sbjct: 476 SEKEMLKVIKKYLRGFKKDFGRERRTEIQEKKTIEYVEE---IKEEDVWVLIDKFGYTKS 532 Query: 513 AKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPL 570 I + + +K + K+ + + GR Y I +P + +G P+ Sbjct: 533 V--DTISVERSSEETLSEYKQEILTKNTSKLSVFTNQGRLYQIKLADIPKVKIKDKGVPI 590 Query: 571 T--GKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENA 628 GK+ E + ++++M + G ++L++ +R+ L E+ Sbjct: 591 QRLGKMKKNEYPLYITTNTELETERVIMLTKTGLIKQTLCSELIS-SRSVVVATKLEEDD 649 Query: 629 HVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLA 687 V+ I + + +L ++ G +L F ++++P L K KG K +++ ED + Sbjct: 650 EVIQITPINEVDEDVLVFSKKGYILRFSINEIPVLRKNAKGVKAVSLME------EDVIE 703 Query: 688 QLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERG 722 +Y+L + + ++I+L E +K G++G Sbjct: 704 GVYILNENNKDVKQLNGKQIELSKVE-RKTRGKKG 737 >UniRef50_Q83G39 DNA gyrase subunit A-like protein n=2 Tax=Tropheryma whipplei RepID=Q83G39_TROWT Length = 824 Score = 360 bits (925), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 198/509 (38%), Positives = 315/509 (61%), Gaps = 19/509 (3%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 LH+ ++++L Y+ VI RALP DGLKPVQRRI+Y MS +GL+ K AR G+ Sbjct: 27 LHQM-QDSFLEYAYSVIHSRALPDARDGLKPVQRRILYTMSRMGLSPDKAHVKCARVTGE 85 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 V+GK HPHGD+A Y+ +V M+Q F+ R PL+DG GN+G+ +D AA RYTE+RLS+ + Sbjct: 86 VMGKLHPHGDAAIYDTLVRMSQDFTMRIPLIDGHGNFGSLNDGP--AASRYTEARLSRAA 143 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 ++++L D+VPN+D +P++LPA LPN+++NG++GIAVGMAT IPPHNL+E Sbjct: 144 VAMINDLESNVVDFVPNYDNQFTQPEVLPALLPNLIVNGSSGIAVGMATSIPPHNLQETV 203 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED 249 +AAI L+ +++L+Q++ I+ GPD+PT II + ++IY G+GS ++RA + Sbjct: 204 RAAIYLVRNRQSSLEQIMKILPGPDFPT-GSIIVGKEAFKEIYATGKGSFKIRAKISIDY 262 Query: 250 GAV-----VISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 + VI+ LP+ V RV+E+I + ++ + D+ D SD +N +LVI + N Sbjct: 263 AGIGHTNLVITELPYMVGSERVIEKIKQGVNAHRIDGILDVTDLSDRKNGLKLVIGIKPN 322 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 364 ++VM++L+ T LE+S+ +N ++ +DG+P +L++L ++ R + RR + Sbjct: 323 -FSPNEVMDNLYRHTPLEESFSVN-SVALIDGKPKTLGMLDMLKVFIDHRVCVITRRSKF 380 Query: 365 RLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQAEAILELK 421 L KRLH+++GLL+A ++ID+ I IIRN + E + LM +T QAE IL+++ Sbjct: 381 YLATHKKRLHMIDGLLLALVDIDKTISIIRNSEGIKEARKNLMKCLNVTRDQAEYILDIR 440 Query: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQ 481 L L KL +K++ EQ EL K L+ IL+ K++ +L EL+ AQ RR+ L+ Sbjct: 441 LNMLTKLSTIKLQSEQEELRKTTQDLEEILSDPNKIDAILIDELKKVAQRLPSPRRTILE 500 Query: 482 EREEAKAMSEHDMLPSEPVTIVLSQMGWV 510 ++K P +VL+ G++ Sbjct: 501 SSVKSKKQKT-----DYPRQVVLTTNGFI 524 >UniRef50_C5JAM2 DNA gyrase subunit A n=1 Tax=uncultured bacterium RepID=C5JAM2_9BACT Length = 890 Score = 359 bits (921), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 217/617 (35%), Positives = 344/617 (55%), Gaps = 65/617 (10%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + D +R+ L E + +YL+Y+M VI+ RALP + DG K V RRI+Y + LG + + Sbjct: 6 LFDDIKRIPLEEEMKQSYLDYAMSVIVARALPDVRDGFKTVHRRILYVLKRLGFDHTKPH 65 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 +KSA VG+V+GKYHPHGDSA YE MV MAQ FS PL+DGQGN+G+ D S AAMRY Sbjct: 66 RKSALIVGEVMGKYHPHGDSAIYETMVRMAQDFSMSIPLIDGQGNFGSIDG-DSAAAMRY 124 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TESR++K S+ +L++L T + PN+DG+LQEP +LP R+P++LLNGT+GIAVGMAT+I Sbjct: 125 TESRMAKISKEILADLDCNTVAFRPNYDGSLQEPTVLPTRVPSMLLNGTSGIAVGMATNI 184 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL E+ A AL++ P L ++++ V+GPD+PT +I+ + I + GRGS+ Sbjct: 185 PPHNLGELLDACCALVENPLMELPEIMEFVKGPDFPTGGQILGTSG-ILNAFRTGRGSIV 243 Query: 241 MRAV-----WKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 MR K + A+V++ +P+QV+ A+++E+I R+K + + ++RDES+ Sbjct: 244 MRGKASVEELKGDKEAIVVTEIPYQVNKAKLVEKIGELSRDKVVDGIGEIRDESNRHGIR 303 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 ++ + R + ++N L+ T L+ ++ N+ + + G P L L+ +L FR Sbjct: 304 IVIEIKRDGNSQV--ILNQLYKHTQLQMNFSANVLAL-VKGVPQTLGLKASLTCFLEFRY 360 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMS---------- 405 D + RR Y LEK + HIL G +A +ID+VI +I+ + K AL + Sbjct: 361 DVIVRRTRYFLEKARDKAHILLGFALALSHIDQVITLIKAATDRKSALATLMHENWDAAS 420 Query: 406 -----------------RFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQ 448 + L+E QA AIL+L+L L +E+ +I+ S+L+ D +Q Sbjct: 421 IKSYLALLQGPQAESGPYYRLSEIQANAILDLRLHKLTGMEQEEIK---SDLQSTMDAIQ 477 Query: 449 ---GILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLS 505 IL ++ ++ E + Y RRS + E+ + + D++PSE + + +S Sbjct: 478 EYIDILGKPERVRKIMTDEFKTIKADYPTPRRSEILPAED--DIEDEDLIPSEEMVVTIS 535 Query: 506 QMGWV------------RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSY 553 G++ R KG G+ K D + + ++ ++F + G+ Y Sbjct: 536 FGGYIKRVPLSTYRAQLRGGKGR----SGMTMKEEDYVQDIIVANTHDRLLFFTNIGQVY 591 Query: 554 AID----PITLPSARGQ 566 I PI P A+G+ Sbjct: 592 RIPVHQLPIGTPQAKGR 608 >UniRef50_D0LNR4 DNA gyrase, A subunit n=3 Tax=Bacteria RepID=D0LNR4_HALO1 Length = 891 Score = 357 bits (915), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 245/656 (37%), Positives = 363/656 (55%), Gaps = 66/656 (10%) Query: 1 MSDMAER--LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASA 58 MSD+A +A+ + +++++Y+M VI+ RALP DGLKPV RRI++A L + Sbjct: 1 MSDIANVTPVAIEKEMRSSFMDYAMSVIISRALPDARDGLKPVHRRILFAQKGLSNYWNR 60 Query: 59 KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAA 117 + K AR VGDV+GKYHPHGDS+ Y+A+V MAQ FS RY LVDGQGN+G+ D DP AA Sbjct: 61 PYLKCARIVGDVIGKYHPHGDSSVYDALVRMAQDFSMRYELVDGQGNFGSIDGDPP--AA 118 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 MRYTE R+++ + LL++L + T DW PN+D EP +LP ++PN+LLNG +GIAVGMA Sbjct: 119 MRYTECRMARLASDLLADLDKETVDWQPNYDDKELEPTVLPTKVPNLLLNGASGIAVGMA 178 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T+IPPHNL E+ A +AL++ P ++L +IV GPD+PT I IR + GRG Sbjct: 179 TNIPPHNLGEILDATMALMEDPDLPEEELAEIVPGPDFPTGGIIHGR-GGIRAAHTLGRG 237 Query: 238 SVRMRA-----VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHE 292 +V +R +KE A+V++ +P V+ +R +E A +R+K++ + D+RDESD + Sbjct: 238 AVVIRGRTQFETVRKERKAIVVTEMPFMVNKSRWIETTAHLVRDKRIDGISDIRDESDRK 297 Query: 293 NPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLV 352 R+V + + + V+N+LF T L+ S+ +N+ I +DGRP V +L L ++ Sbjct: 298 G-IRVVFELKRD-ANEQVVLNNLFKMTALQTSFNVNMLAI-VDGRPQVLSLRSALQVFIE 354 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMS---- 405 RR VRRR + L + +R I+EGL +A + ID VIEIIR + DE K LMS Sbjct: 355 HRRTVVRRRCLFELRQARERREIVEGLGLAVMQIDRVIEIIRTSKDTDEAKARLMSERMM 414 Query: 406 -------RFG----------------LTETQAEAILELKLRHLAKLEEMKIRGEQSELEK 442 R G L+ QA+AIL+++L L LE K+ E EL + Sbjct: 415 GLDGFLERAGRPADEVEAVRTAGFVHLSARQAQAILDMRLGRLTGLEREKVEAEYRELWE 474 Query: 443 ERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTI 502 D L+GIL + K+ ++ EL+ Y D RR+ + + +E + + E ++ E + + Sbjct: 475 ITDYLEGILGDDVKLRGVIVDELREMRDQYADPRRTEIVD-QEGEILDEQ-LIKVEDMVV 532 Query: 503 VLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPV-VFVDST----------GR 551 ++ G+V+ + A G + G + A G + +FV ST GR Sbjct: 533 TRTRRGYVKRTALDEYSAQG---RGGKGVRGAASGDDDFVADMFVASTHDHLLMFTNIGR 589 Query: 552 SYAIDPITLPSAR--GQGEPLTGKL-TLPPGATVDHML---MESDDQKLLMASDAG 601 Y LPS +G P + L P V ML +DD MA+ G Sbjct: 590 VYQKKVYELPSGSRISKGRPFVNVIEALQPDEYVVGMLPVKEFTDDLSAFMATRMG 645 >UniRef50_Q2SS33 DNA topoisomerase IV, A subunit n=5 Tax=Mollicutes RepID=Q2SS33_MYCCT Length = 899 Score = 356 bits (913), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 223/691 (32%), Positives = 384/691 (55%), Gaps = 23/691 (3%) Query: 1 MSDMAERLA--LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASA 58 MSD +E + L E N + Y+ Y+I +RALP + DGLKPVQRRI+YAM++L L Sbjct: 1 MSDKSEIILYPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDK 60 Query: 59 KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 118 +KKSAR VG+V+GKYHPHGDS+ Y+AMV M+Q + PLVD QGN G+ D S AAM Sbjct: 61 PYKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSID-GDSAAAM 119 Query: 119 RYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMAT 178 RYTE+RL+K S LLL +L + T + PNFD + EP +LP+ PNIL+NG TGIA G AT Sbjct: 120 RYTEARLTKISNLLLEDLEKDTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYAT 179 Query: 179 DIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGS 238 ++PPHNL E+ A I +I P T+DQ+L IV+GPD+PT A II ++ IR+ + G+G Sbjct: 180 NMPPHNLSEIIDATIDIIKNPNITIDQILKIVKGPDFPTGA-IIQNKQGIREAFLTGKGK 238 Query: 239 VRMRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 V + + W +E +VI +P++V ++++I + N + ++RDE+D + + Sbjct: 239 VIISSKWHQEKNNIVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLR--I 296 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 ++ + + +++ V LF +T L SY N N+I +D +P L++I+ ++ ++ Sbjct: 297 VIELNEKANLETVRKFLFKSTWLSVSYNYN-NIIIVDKQPKQLGLIDIIKAYISHYKEVF 355 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAE 415 +R + L K RL I++GL+ A +DEVI++IR + A L+ F T Q+ Sbjct: 356 IKRTEFNLNKTNLRLEIVKGLIKALSILDEVIKVIRKSENRIDAINNLVISFNFTTNQST 415 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 AI++++L L + K+ E++EL + + Q IL ++N + L+ + +G Sbjct: 416 AIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEILNDNLVLDNEIISRLEEVKKQFGIK 475 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNY---KAGDSFK 532 R+S +++ E + + +++ + + + +S+ G+++ + ++ L+ K D + Sbjct: 476 RKSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSSFGKKPNDMWI 535 Query: 533 AAVKGKSNQPVVFVDSTGRSYAID--PITLPSARGQGEPLTGKLTLPPGATVDHMLMESD 590 + + ++ + Y+I I+ + QG + T P T+ + L+ + Sbjct: 536 SQGVCSNLDHLILISDQANYYSIPLYKISTSKWKEQGVHINSVATTQPNETIINALVIKE 595 Query: 591 ----DQKLLMASDAGYGFVCTFNDLVAR--NRAGKALITLPENAHVMPPVVIEDASDMLL 644 Q LL+ + G +DL + N++ K ++ + ++ ++ +I + Sbjct: 596 FINSTQHLLLVTKNGLIKRTQISDLETKIFNKSFK-IMKISDDDSLVYADLISSKTSYCC 654 Query: 645 AITQAGRMLMFPVSDLP-QLSKGKGNKIINI 674 +T+ G + + + D+P Q + KG K N+ Sbjct: 655 IVTKNGYAVRYNIEDIPIQSTISKGVKAANL 685 >UniRef50_A2BND1 DNA gyrase/topoisomerase IV, subunit A n=7 Tax=Prochlorococcus marinus RepID=A2BND1_PROMS Length = 813 Score = 355 bits (912), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 248/731 (33%), Positives = 397/731 (54%), Gaps = 63/731 (8%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 ++L E + +YL Y+M VI+ RALP DGLKPVQRRI++AM ELGL F+K AR V Sbjct: 9 ISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRIIFAMYELGLTPDKPFRKCARVV 68 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLS 126 GDVLGKYHPHGD A Y+A+V + Q FS +YP +DG GN+G+ D DP AAMRYTE+RL+ Sbjct: 69 GDVLGKYHPHGDQAVYDALVKLVQNFSTKYPTLDGHGNFGSIDNDPP--AAMRYTETRLA 126 Query: 127 KYSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 + L E+G T ++ NFDG+ +EP +LPA+LP +LLNG+TGIAVGMAT+IPPHNL Sbjct: 127 PIAHKGFLEEIGSETVNFSNNFDGSQKEPDVLPAQLPFLLLNGSTGIAVGMATNIPPHNL 186 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245 E+ + L+ + +L +I++GPD+PT E+I SRA I ++Y+ G+GS+ +R V Sbjct: 187 GEIVDGLVTLVKNKDISDKKLFNIIKGPDFPTGGELIYSRA-IEELYQTGKGSITIRGVI 245 Query: 246 KKED----------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 E+ A++I LP+Q++ A +E++A + K+ + D+RDESD + Sbjct: 246 NTEEVNLGKGKHKKNAIIIKELPYQINKAGWIEKLAELVNAGKIIGISDIRDESDRD-GM 304 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSY-RINLNMIGLDGRPAVKNLLEILSEWLVFR 354 R+VI + + + + V+++L+ T L+ ++ I L +I G+P NL + L+ +L FR Sbjct: 305 RIVIELKKDS-NSELVISNLYKKTTLQTNFGAIFLALI--KGKPVQLNLKKYLNYFLEFR 361 Query: 355 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEII---RNEDEPKPALMSRFGLTE 411 +T+R+R Y L+ L +L I EGL A +I +VI II N + + L+ +F L+E Sbjct: 362 EETIRKRTFYFLKNTLDKLEISEGLSKATKDIKKVIAIIEESENSVQARSKLVEKFFLSE 421 Query: 412 TQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQA 471 QA ++L++ L+ L LE+ +I E L ++++ Q +L + LL +EL + Sbjct: 422 KQANSVLDMPLKKLTNLEKNQIDNEIKNLAEKKNYFQKLLNERELLLKLLIEELLILKKK 481 Query: 472 YGDDRRSP----LQEREEAKAMSEH---DMLPSEPVTIV-----LSQMGWVRSAKGHDID 519 Y R++ L + EE + ++ D + + + L +M K + Sbjct: 482 YNVIRKTKIIKNLNQNEELETLNNQILEDFINKKTKLYIDNRLYLKRMILSNYKKSFEGV 541 Query: 520 APGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKL--TLP 577 ++ K F + + N ++ + +TGR + ID S+ + L K+ + Sbjct: 542 NKIIDNKNIQKFICNI--EKNTKLIGITNTGRVFNID---WESSINKDYKLDNKILGNIH 596 Query: 578 PGATVDHMLMESDDQKLL--MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVV 635 P ++ ++ + + L + SD + V D++ NR+ IT +N Sbjct: 597 PSEIINFHSIKKETRNYLCILNSDGRFKKVLFDKDMIKSNRS--FTITKLKNNLKTVDSF 654 Query: 636 IEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQ 695 I + S L+ +T GR+ F +S NK + S ++ GL +LP + Sbjct: 655 ISNESKNLIILTSIGRIFKFNLS----------NKFLTATSKQSK----GLIIAKLLPTE 700 Query: 696 ---STLTIHVG 703 S T H G Sbjct: 701 KIVSCCTFHDG 711 >UniRef50_B3TAI1 Putative DNA gyrase/topoisomerase IV, subunit A n=1 Tax=uncultured marine microorganism HF4000_APKG8D23 RepID=B3TAI1_9ZZZZ Length = 898 Score = 353 bits (907), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 235/624 (37%), Positives = 340/624 (54%), Gaps = 70/624 (11%) Query: 4 MAERLALHEFT---ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 MAE L + + E +Y+NY+M VI+ RALP + DGLKPV RRI++ M + G + Sbjct: 1 MAENLLRRDISDEMEESYINYAMSVIIGRALPDVRDGLKPVHRRILWGMHQAGHTHDKGY 60 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 119 KSAR+VG+V+GKYHPHGD A Y+ MV MAQ FS RYPL+DGQGN+G+ D DP AAMR Sbjct: 61 SKSARSVGEVMGKYHPHGDQALYDTMVRMAQDFSLRYPLIDGQGNFGSIDGDPP--AAMR 118 Query: 120 YTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 179 YTESRL + S+ +L ++ + T D PNFD T EP +LPARLPN+LLNG+ GIAVGMAT Sbjct: 119 YTESRLDRLSQHMLDDINKDTIDMEPNFDDTETEPTVLPARLPNLLLNGSDGIAVGMATK 178 Query: 180 IPPHNLREVAQA-------------AIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRA 226 IPPHNL EVA A I L + PK + ++ ++GPD+PT A I Sbjct: 179 IPPHNLNEVAAAIKFHVEKVVEQNRKIGLDNPPKIDASEYMEYLKGPDFPTGATIHGVDG 238 Query: 227 EIRKIYENGRGSVRMRA-VWKKEDG---AVVISALPHQVSGARVLEQIAAQMRNKKLPMV 282 I +Y G G ++R+ V +ED +V+ ++P+QV A +L+ IA +R + + Sbjct: 239 -ILDMYRTGNGRFQIRSDVEVQEDSRGKRLVVHSIPYQVKKAGMLQGIAELVRKDIIKGI 297 Query: 283 DDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIG-LDGRPAVK 341 D+RDES E R+VI + N D V+N L+ ++ L++SY + NM+G L+G P Sbjct: 298 RDIRDESSKEG-IRVVIEIKQN-ADPHAVLNQLYQSSRLQESY--SANMMGILNGEPVQL 353 Query: 342 NLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---- 397 +L IL ++ R V RR + +K R HIL GLL A + E+IE+ R+ D Sbjct: 354 DLRTILHTYVRHRESVVERRTQFEFDKAEARAHILHGLLRAQKRMGEIIEVGRSSDSRDQ 413 Query: 398 -------EPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450 + K + RF ++ QA+AI E +L L KL ++ E +L+ Q I Sbjct: 414 FEQYLRGDEKYPKIRRFDFSDKQAKAIAERRLYQLTKLNVQEVADELKKLKGAIKDYQNI 473 Query: 451 LASERKMNNLLKKELQADAQAYGDDRRS-----PLQEREEAKAMSEHDMLPSEPVTIVLS 505 L S + N++ EL +GD+RRS PL +M D++ + + I L+ Sbjct: 474 LGSRIRRLNIIISELDEVVDRHGDERRSRIDPMPL-------SMDREDLVAEQAIVISLT 526 Query: 506 QMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQP------------VVFVDSTGRSY 553 + ++R +++ L + G K V + + P ++F D GR Y Sbjct: 527 RDNYIRHLP---VESFRLQNRGGKGLKGVVTKEEDAPSKIVTCFSKDRLLIFTD-MGRVY 582 Query: 554 AIDPITLPSAR--GQGEPLTGKLT 575 + PSA G+G + LT Sbjct: 583 GLRAWETPSASRYGRGSHIRNLLT 606 >UniRef50_P72525 DNA topoisomerase 4 subunit A n=182 Tax=Firmicutes RepID=PARC_STRPN Length = 823 Score = 353 bits (907), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 203/521 (38%), Positives = 324/521 (62%), Gaps = 18/521 (3%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 MS++ + ++L + + YS Y+I DRALP I DGLKPVQRRI+Y+M++ + Sbjct: 1 MSNI-QNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSY 59 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMR 119 +KSA++VG+++G +HPHGDS+ Y+AMV M+Q + R LV+ GN G+ D DP AAMR Sbjct: 60 RKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPP--AAMR 117 Query: 120 YTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 179 YTE+RLS+ + LL ++ + T + NFD T +EP +LPA PN+L+NG+TGI+ G ATD Sbjct: 118 YTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATD 177 Query: 180 IPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSV 239 IPPHNL EV AA+ +ID P +D+L++ + GPD+PT A II R EI+K YE G+G V Sbjct: 178 IPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRV 236 Query: 240 RMRA---VWKKEDGA--VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENP 294 +R+ + K + G +VI +P++++ A ++++I N K+ + ++RDESD + Sbjct: 237 VVRSKTEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDG- 295 Query: 295 TRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVF 353 R+ I + + + + V+N+LF TDL+ +Y N NM+ +D P ++ ILS ++ Sbjct: 296 LRIAIELKKD-ANTELVLNYLFKYTDLQINY--NFNMVAIDNFTPRQVGIVPILSSYIAH 352 Query: 354 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLT 410 RR+ + R + EK KRLHI+EGL+ +DEVI +IR N+ + K L + T Sbjct: 353 RREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFT 412 Query: 411 ETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQ 470 E QAEAI+ L+L L + + ++ E++EL ++ L I+ ER M NL+KKEL+ + Sbjct: 413 EEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKK 472 Query: 471 AYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVR 511 + R S L++ +A + ++ E + +++ G+++ Sbjct: 473 KFATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIK 513 >UniRef50_P73077 DNA topoisomerase 4 subunit A n=5 Tax=Bacteria RepID=PARC_SYNY3 Length = 920 Score = 352 bits (904), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 212/532 (39%), Positives = 317/532 (59%), Gaps = 30/532 (5%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 LHE E +YL Y+M VI+ RALP + DGLKPV RRI+YAM ELGL F+K AR VGD Sbjct: 16 LHEEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPFRKCARVVGD 75 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKY 128 VLGKYHPHGD + Y+A+V M Q FS RYPL+ G GN+G+ D DP AAMRYTE+RL+ Sbjct: 76 VLGKYHPHGDQSVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPP--AAMRYTETRLAPI 133 Query: 129 S-ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 + +L + + D+ NFD + +EP ++PA+LP +LLNG +GIAVGMAT IPPHNL E Sbjct: 134 AMGAMLEGISEAIVDFTGNFDNSQEEPTVVPAQLPLLLLNGCSGIAVGMATSIPPHNLGE 193 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 V I LI++P + +L ++ GPD+PT I+ S I + Y+ GRG + +R V Sbjct: 194 VVDGLIGLINKPDLSDQELFKLIPGPDFPTGGHILDSEG-ILQAYQTGRGLIPVRGVSHI 252 Query: 248 ED-----------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 E A+VI+ LP QV+ A +E+IA+ + + KL + DLRDESD R Sbjct: 253 ETIRGEKKRSHNRTAIVITELPFQVNKAAWIEKIASLVNDGKLDGISDLRDESDRTG-MR 311 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 +VI + + + + ++ L+ T L+ ++ + + + ++ +P +L +IL E+L FR D Sbjct: 312 VVIELKRD-AEPNAILQKLYRMTPLQSNFGV-IFLALVNNQPVQMSLRQILQEFLQFRED 369 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQ 413 T+ R+ L + +RL +L GLL+ N+D +IEI+R + K L R G++ Q Sbjct: 370 TLLRQYENELGENRRRLELLTGLLIGLENLDALIEILRFAADGTTAKIQLQERLGISLQQ 429 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 +AIL + +R + LE K++ E ++L + +QL+ ++ ++ LKKEL+ + + Sbjct: 430 GDAILGMPMRRITGLEREKLQQEHTDLAQRIEQLETLIGDRQERLKALKKELRGLKKKFA 489 Query: 474 DDRRSPLQEREEAKAMS---EHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG 522 D+RR+ + + AK D LP + V SQ SA ++D+PG Sbjct: 490 DERRTKILQGMPAKIEPLPVNQDPLPEATIPPVESQ-----SAPEEELDSPG 536 >UniRef50_C8NZH8 DNA topoisomerase IV, A subunit n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZH8_ERYRH Length = 822 Score = 352 bits (903), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 218/563 (38%), Positives = 327/563 (58%), Gaps = 28/563 (4%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 +L + + + YS Y+I +RALP + DGLKPVQRRI+YAM ++KSA+T Sbjct: 8 KLPIEDIVGERFGRYSKYIIQERALPDVRDGLKPVQRRILYAMFHDKNFYDKPYRKSAKT 67 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VG V+G YHPHGDS+ YEAMV M+Q + PL+D QGN G+ DD + AAMRYTE+R+S Sbjct: 68 VGLVIGNYHPHGDSSVYEAMVRMSQSWKMNMPLIDMQGNNGSIDDDPA-AAMRYTEARIS 126 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 K S+ LL + + +V NFD EP +LPAR PN+L+NG+TGIA G AT+IPP NL Sbjct: 127 KLSQKLLENIDEEVVPFVLNFDDMTTEPSVLPARYPNLLVNGSTGIAAGYATNIPPFNLN 186 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA--- 243 E+ A+I + P ++++++ +VQGPD+PT A II + I I G+G + +RA Sbjct: 187 EIMDASIYRLHNPNCSVEEIMTMVQGPDFPTGA-IIQGQEGIEDIIRKGKGRIVVRAKAE 245 Query: 244 -VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKK----LPMVDDLRDESDHENPTRLV 298 V K +VI+ LP++V + V+ +I ++R K V D+RDESD T L Sbjct: 246 IVENKSMKQIVITELPYEVIKSNVVRKI-DELRFTKASEGFGDVMDVRDESDR---TGLR 301 Query: 299 IVPRSNR-VDMDQVMNHLFATTDLEKSYRINLNMIGL-DGRPAVKNLLEILSEWLVFRRD 356 IV R +++ ++N + T+L+ Y N NM+ + D RP V LLE+L +L FR++ Sbjct: 302 IVIDCKRDANVESILNLFYKYTELQVYY--NANMVAIVDQRPKVCGLLEVLDAYLKFRQE 359 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQ 413 V R YR E+ KRLHILEGL+ A N+DE+I +IR N E + +M+ FG TE Q Sbjct: 360 VVLNRSKYRYEQKEKRLHILEGLMKATSNLDEIIAVIRSSNNRSESRNNIMAEFGFTEAQ 419 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 A AI++L+L L+ + +R E ++L E + L ++ + +NN++ KE +A+ Sbjct: 420 ATAIVDLQLYRLSSTDINALRDEFAKLANELEYLDLVINNIDMLNNMIVKEFMEIKEAFD 479 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGW-----VRSAKGHDIDAPGLNYKAG 528 RRS ++ + ++ +E V + +S+ G+ +RS D L + Sbjct: 480 TPRRSVIEAEISELEVDHLSLITNEAVMVTVSRDGYLKKVSLRSYGSSQKDVIALMDEDM 539 Query: 529 DSFKAAVKGKSNQPVVFVDSTGR 551 F + V ++ +VFV S GR Sbjct: 540 PVFSSEV--ETTDYLVFVTSRGR 560 >UniRef50_B5Y5U7 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B5Y5U7_PHATR Length = 818 Score = 352 bits (902), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 204/520 (39%), Positives = 318/520 (61%), Gaps = 33/520 (6%) Query: 19 LNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHG 78 + Y++ +IM RA+P DGLKPV RRI+YAM +L L + +K AR VG+VLGK+HPHG Sbjct: 1 MQYALSIIMGRAIPDARDGLKPVHRRILYAMDQLSLYPNTGHRKCARVVGEVLGKFHPHG 60 Query: 79 DSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSE-LLLSEL 136 D A Y+A+V +AQ FS YPL+DG GN+G+ D DP AAMRYTE RL+K S+ LL +L Sbjct: 61 DMAVYDALVRLAQHFSTAYPLIDGHGNFGSIDADPA--AAMRYTECRLTKLSQAALLEDL 118 Query: 137 GQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALI 196 T D++PNFDG EP +LPA+LP +LLNG++GIAVGMAT+IPPHNL E+ A AL+ Sbjct: 119 QDDTVDFLPNFDGNEIEPAVLPAKLPILLLNGSSGIAVGMATNIPPHNLNEIMTACTALV 178 Query: 197 DQPK----TTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED--- 249 + T +LL +V GPD+PT A I+ S K+Y G G + MRAV K E Sbjct: 179 KARQGGAAVTDKKLLQMVPGPDFPTGASIL-STGGTEKLYTTGNGGIVMRAVTKIEKITT 237 Query: 250 --------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 A++++ LP+QV+ A +LE+IA + KKL + DLRDESD + R+VI Sbjct: 238 GRKSSITRTAIIVTELPYQVNKAALLEKIAGLVNEKKLDGIADLRDESDRDG-IRVVIEL 296 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLL-------EILSEWLVFR 354 + + V V+N+L+ T L+ ++ N + R + +L+ + + +L FR Sbjct: 297 KRDAV-AAVVLNNLYKKTPLQTTFSGNFLALMTANRDSSSSLVPQRFTLRQAMDCFLDFR 355 Query: 355 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTE 411 +T+RR+ ++L KV R HI+ GLL+A +D VI+I+R ++ + AL G + Sbjct: 356 FETIRRKSQFQLTKVNARSHIVAGLLMALDKVDMVIQIVRASADQQAAREALYIELGTSS 415 Query: 412 TQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQA 471 Q +AIL+L+L L +L + K+ E+++LE+ R+ L +L + + +++++E + Sbjct: 416 EQTDAILKLQLGQLTRLNKGKLESEKADLEESRESLTHLLEVDDAVYDVMREEFIDMMKR 475 Query: 472 YGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVR 511 +G +R+S + ++ + D++ + IV+++ G+++ Sbjct: 476 FGGERKSSIIVEDDGD-FCDMDLIENSRSVIVVTRGGYIK 514 >UniRef50_Q45066 DNA topoisomerase 4 subunit A n=136 Tax=Firmicutes RepID=PARC_BACSU Length = 806 Score = 350 bits (899), Expect = 9e-95, Method: Compositional matrix adjust. Identities = 215/590 (36%), Positives = 346/590 (58%), Gaps = 22/590 (3%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 L L E + + YS Y+I DRALP DGLKPVQRRI+YAM G F+K+A+TV Sbjct: 10 LPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRKAAKTV 69 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLS 126 G+V+G YHPHGDS+ YEAMV M+Q + R L++ GN G+ D DP AAMRYTE+RLS Sbjct: 70 GNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPP--AAMRYTEARLS 127 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 + LL ++ + T ++VPNFD T +EP +LPA PN+L+NG+TGI+ G ATDIPPH+L Sbjct: 128 PIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPPHHLG 187 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 EV A I I P ++D+L+++++GPD+PT II IRK YE G+G + +R + Sbjct: 188 EVIDAVIKRIQMPSCSVDELMEVIKGPDFPT-GGIIQGVDGIRKAYETGKGKIIIRGKAE 246 Query: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 E +VI+ +P +V+ A +++++ +KK+ + ++RDE+D V++ Sbjct: 247 IETIRGGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLR--VVIE 304 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRR 360 D ++N L+ TDL+ +Y N NM+ + RP + +L IL ++ +++ V Sbjct: 305 LKKEADAKGILNFLYKNTDLQITY--NFNMVAIHNRRPMLMSLPSILDAYIGHQKEVVTN 362 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEAI 417 R Y L+K R HI+EGL+ A +DEVI IR+ + + A L++++ TE QAEAI Sbjct: 363 RSVYELQKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAKYEFTEPQAEAI 422 Query: 418 LELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRR 477 + L+L L + ++ E EL K+ ++L+ IL++++K+ ++ L+A + Y D RR Sbjct: 423 VSLQLYRLTNTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKKYADTRR 482 Query: 478 SPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP-GLNYKAGDSFKAAVK 536 S ++E+ E ++ M+ SE V + +++ G+++ A G ++ D+ + + Sbjct: 483 SVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFGMKDTDRMLHQ 542 Query: 537 GKSNQPVVFVDSTGR-SYAIDPI-TLPSARGQ--GEPLTGKLTLPPGATV 582 + N V + T + SY P+ LP R + G+ + +T+ T+ Sbjct: 543 FEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDETI 592 >UniRef50_D1C5K4 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5K4_SPHTD Length = 813 Score = 350 bits (897), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 214/530 (40%), Positives = 321/530 (60%), Gaps = 34/530 (6%) Query: 6 ERLALHEFT---ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 E + EF+ E+A++ Y++ V+ RALP DGLKPVQRRI++ M E G ++ K Sbjct: 12 ETIETEEFSTLFEDAFVQYALAVVTSRALPDARDGLKPVQRRILWCMYENGHRSNRPTVK 71 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SA VGDVL YHPHGDSA Y+A V MAQ F+ RYPL++GQGN+G+ D + AA RYTE Sbjct: 72 SASVVGDVLKSYHPHGDSAVYDAAVRMAQDFTMRYPLIEGQGNFGSIDGDAA-AAYRYTE 130 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQ-----EPKMLPARLPNILLNGTTGIAVGMA 177 RLS ELLL ++ Q T VP LQ +P LPAR+P I N ++GIAVG++ Sbjct: 131 MRLSPIGELLLRDIEQET---VPFEQTYLQMPNVVQPVYLPARIPPI-CNPSSGIAVGLS 186 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 TDIPPHNLRE +AAIAL+D P+ T+D+L+ I+ GPD+PT II + IR E+G+G Sbjct: 187 TDIPPHNLREAIRAAIALLDNPEMTVDELMKILPGPDFPTGGRIIGTDG-IRAYLESGKG 245 Query: 238 SVRMRAVWKKEDG----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHEN 293 + +R + E+ +V++ +P +S +R++ I + + K+ V D+R+ESD E Sbjct: 246 RLVIRGEVRLEEELRQRNLVVTEIP-PISRSRLVRSIINAVNDGKVTGVTDVRNESDDEK 304 Query: 294 PTRLVI-VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDG-------RPAVKNLLE 345 TR+V+ + RS ++ V+N L+ TDL+ + +N+NM+ L G +P +L+ Sbjct: 305 GTRIVVELERSATPEV--VLNQLYRFTDLQTA--VNVNMVFLFGDPGQPARQPRRTGMLD 360 Query: 346 ILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEII---RNEDEPKPA 402 +L W + D + RR Y+L K +RLH++EGL++ + DE++ I R+ + K Sbjct: 361 LLRYWNRHQIDVITRRAEYQLRKAQERLHVVEGLIIGAAHADEIVRIFQKARDRNVAKEK 420 Query: 403 LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLK 462 + ++ LT+ QA+ I + L + +L+ K E+ EL K +LQ +LASE K LLK Sbjct: 421 IKVKYNLTDIQADVIANMTLAQVTRLDAAKYAEEKKELTKRIKELQALLASEAKKVALLK 480 Query: 463 KELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS 512 +EL A AQ +GDDRR+ + + + S ++ P+ IV SQ G V++ Sbjct: 481 EELTAIAQEHGDDRRTRIDREGQEEIASVASLIEERPILIVASQSGRVKA 530 >UniRef50_D2MM14 DNA topoisomerase IV, A subunit n=2 Tax=Erysipelotrichaceae RepID=D2MM14_9FIRM Length = 830 Score = 349 bits (896), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 204/550 (37%), Positives = 330/550 (60%), Gaps = 20/550 (3%) Query: 21 YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDS 80 Y+ Y+I +RALP + DGLKPVQRRI+YAM G ++KSA+TVG V+G YHPHGDS Sbjct: 29 YAKYIIQERALPDVRDGLKPVQRRILYAMYNDGNTHDKPYRKSAKTVGLVIGNYHPHGDS 88 Query: 81 ACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGT 140 + Y+AMV M+Q + R P +D GN G+ DD + AAMRYTE+RL+K ++++ +L + T Sbjct: 89 SVYDAMVRMSQDWKVRMPFIDMHGNNGSIDDDPA-AAMRYTEARLAKVTQVMEEDLDKDT 147 Query: 141 ADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPK 200 + PNFD T EP +LP P +L+NG TGIA G AT++PPHN+ EV A I I + Sbjct: 148 VEMSPNFDDTDIEPTVLPVSFPVMLVNGATGIAAGYATNMPPHNINEVIDATIYRIQNAE 207 Query: 201 TTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA----VWKKEDGAVVISA 256 +L+ ++DI+ GPD+PT I+ IR+ + G+G + +RA + +K +VI+ Sbjct: 208 CSLNDVMDILPGPDFPT-GGIVQGEEGIREAFTTGKGRIVVRAKTEIIQEKNLQQIVITE 266 Query: 257 LPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLF 316 +P++V +++++ ++++ + D+RDESD N R+VI R + VD + ++ + F Sbjct: 267 IPYEVVKGNLVKKMDEIRISREVDGLIDVRDESDR-NGLRIVIDVRKD-VDANLILQYFF 324 Query: 317 ATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHIL 376 TDL+ Y N N+ + RP LL +L ++ FR++ V RR + L K+ R+HI+ Sbjct: 325 KNTDLQVYYNYN-NVAIMRERPVQVGLLGLLDAFIDFRKEVVLRRSRFELNKMEARVHII 383 Query: 377 EGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKI 433 EGL+ A +DEVI IIR ++ + K L+ FG E QAEAI+ L+L L+ + + + Sbjct: 384 EGLIKAVSVLDEVIAIIRASKDKADAKFRLIENFGFDEVQAEAIVTLRLYRLSNTDIVSL 443 Query: 434 RGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHD 493 R E ++L + ++ + IL +E + +L+ +EL+ + YGD RR+ ++ + + +S+ Sbjct: 444 RNEFAQLVNQIEETKSILENESVLRHLMVQELRQVKENYGDARRTKIEAKIDEINISKEA 503 Query: 494 MLPSEPVTIVLSQMGWVRSAKGHDIDA-----PGLNYKAGDSFKAAVKGKSNQPVVFVDS 548 M+PSE V I +S+ G+++ +A GL K GD + + ++ S Sbjct: 504 MIPSEQVMITVSKDGYLKRVSLRSFNAVRDQETGL--KTGDQLIGQREVNTLDTLLLFTS 561 Query: 549 TGRSYAIDPI 558 G +YA+ P+ Sbjct: 562 KG-NYAMVPV 570 >UniRef50_D2QWS9 DNA gyrase, A subunit n=5 Tax=Planctomycetaceae RepID=D2QWS9_9PLAN Length = 938 Score = 349 bits (895), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 263/743 (35%), Positives = 388/743 (52%), Gaps = 79/743 (10%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 + +YL Y+M VI+ RALP + DGLKP QRRI+ AM++L L A K A+ GD G Y Sbjct: 35 KESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLTPGAPRVKCAKISGDTSGNY 94 Query: 75 HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLS 134 HPHG+S Y +V MAQ ++ R+ L+D QGN+G+ AAMRYTE+RLS + ++L Sbjct: 95 HPHGESVIYPTLVRMAQEWNMRHILIDKQGNFGSIAGLPP-AAMRYTEARLSPVASMMLE 153 Query: 135 ELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIA 194 +L T D+VP +D QEP +LP R PN+L+NG GIAVGMAT IPPHNL EV +A + Sbjct: 154 DLNLDTVDFVPTYDERNQEPTVLPCRFPNLLVNGAQGIAVGMATSIPPHNLGEVCEALVK 213 Query: 195 LIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV-----WKKED 249 +ID P+ TL +L +I++GPD+PT I RA IR+ Y +GR ++ +RA KK+ Sbjct: 214 VIDDPEVTLGELCEIIKGPDFPT-GGTICGRAGIRRGYRDGRSTIVLRAKTRIEEHKKDR 272 Query: 250 GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMD 309 ++I+ +P+Q + RV+E+IA + +++ + + D SD + P LVI + + D Sbjct: 273 YRIIITEIPYQQARDRVVEKIAELVNEERIKGISGITDLSDLKEPVHLVIDIKRD-ADPY 331 Query: 310 QVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKV 369 V+N L+ + L+ S I L + +DG+P +L E+L E+L R +RRR + L K Sbjct: 332 VVLNQLYQFSPLQDSISIILLAL-VDGKPRELSLKELLEEFLRHRVTVIRRRTQFLLSKA 390 Query: 370 LKRLHILEGLLVAFLNIDEVIEII---RNEDEPKPALMS--------------------- 405 +R H +EGLL+A NIDE+I II R + E K LM Sbjct: 391 RRRKHTVEGLLLALANIDEIIRIIRASRTQAEAKVGLMGVECPAAMMQRALGEEGFAMFQ 450 Query: 406 -------RFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458 + LT Q+EAIL + L L LE+ ++ GE +EL KE + ILA E + Sbjct: 451 SERGASDTYRLTAVQSEAILRMTLGQLVNLEQERLGGEHAELLKEIAEYLRILADENIIR 510 Query: 459 NLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI 518 ++K+EL A A YGD+RR+ + EE ++ D++ E + + +S G+++ Sbjct: 511 AMIKEELIAIAAKYGDERRTEISG-EEIGDVNLEDLITEETMVVSISHRGYIKR------ 563 Query: 519 DAPGLNYKA----GDSFKAAVKGKSNQPV--VFVDST----------GRSYAIDPITLP- 561 P Y+A G K A K + P+ +FV ST GR Y LP Sbjct: 564 -TPASTYRAQRRGGKGLKGA-KTEDEDPIAHLFVASTHAYLLFFTNLGRVYWQKVYDLPE 621 Query: 562 -SARGQGEPLTGKLTLPPGATVDHMLMESD-DQK---LLMASDAGYGFVCTFNDLVARNR 616 S +G + L L G + + D DQ+ L+MA+ G D + Sbjct: 622 LSRESRGRAIVNLLNLSEGEKIAECIAIRDFDQQGHFLMMATRKGLVKKSPLEDYSRPKK 681 Query: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDL-PQLSKGKGNKIINIP 675 G I L E+ V+ VV + +++L+ T G + F SD P G K I++ Sbjct: 682 GGIIAIKLREDDEVVDVVVTKPGDEVVLS-TSTGMAIRFSESDARPMGRNTSGVKGISLA 740 Query: 676 SAEAARGEDGLAQLYVLPPQSTL 698 S D L + V P +TL Sbjct: 741 SG------DSLVGMVVADPDATL 757 >UniRef50_C1N3Z1 Predicted protein n=2 Tax=cellular organisms RepID=C1N3Z1_9CHLO Length = 1082 Score = 348 bits (893), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 264/764 (34%), Positives = 385/764 (50%), Gaps = 105/764 (13%) Query: 17 AYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHP 76 +YL Y+M VI+ RALP + DGLKPV RRI+YAM ELGL++ FKK AR VG+VLGK+HP Sbjct: 74 SYLAYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDSKKPFKKCARVVGEVLGKFHP 133 Query: 77 HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSE-LLLS 134 HGD + Y+A+V MAQ FS LVDG GN+G+ D DP AAMRYTE RL +E +LL+ Sbjct: 134 HGDQSVYDALVRMAQDFSMSAQLVDGHGNFGSLDADPP--AAMRYTECRLRSVAEAMLLA 191 Query: 135 ELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQA-AI 193 ++ D+ FDG+ EP +LPARLPNIL+NG+TGIAVGMAT IPPHNLREVA A A+ Sbjct: 192 DIDADAVDFTETFDGSQNEPSVLPARLPNILINGSTGIAVGMATSIPPHNLREVADALAV 251 Query: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSR--AEIRKIYENGRGSVRMRAVWKKED-- 249 D TLD LL ++ PD+PT I+ + R +Y G+GSV +R E+ Sbjct: 252 YAADPDGCTLDDLLKVMPAPDFPTSGIIMAPKEGKGFRDMYATGKGSVTLRGAAHIEEIK 311 Query: 250 -----------GAVVISALPHQ-----------------VSGARVLEQIAAQMRNKKLPM 281 AV+I+++P+Q + A + QIA + +++L Sbjct: 312 TSVRGKNATTKNAVIITSIPYQARSIHWSPYDRVGVVNATNKASLCGQIADLVNSRQLDG 371 Query: 282 VDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR-PAV 340 V D+RDESD + +V + RS D + V L+ T L+ R+++N++GL GR P V Sbjct: 372 VVDVRDESDRDGMRVVVEIRRSG--DPNFVREQLYTRTRLQ--VRVSVNLVGLIGREPKV 427 Query: 341 KNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRN-EDEP 399 L++I+ E+L FR +++ RR + L K RLH++EG L D V+ IR +D P Sbjct: 428 LTLMDIMREFLEFRCESIERRARHELSKASSRLHVVEGYLAVQAAPDAVVAAIRAAKDGP 487 Query: 400 ---KPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERK 456 K + F L++ Q+EA+L + LR L LE K+R E+++L + +QL +L+ Sbjct: 488 EAQKTLQEAPFSLSKEQSEAVLAMPLRRLTGLEHDKLRAEEADLTAKVEQLNALLSDRAL 547 Query: 457 MNNLLKKELQADAQAYGDDR--------------------RSP-----------LQEREE 485 + + E + YG +R RSP + ERE Sbjct: 548 VIAAVASEAKELRDKYGVERKTLIDHSAAKLAAEVAEARRRSPPSGDGGEDVGNVAEREM 607 Query: 486 AKA--MSEHDMLPSEPVT----IVLSQMGWV---------RSAKGHDIDAPGLNYKAGDS 530 A A ++ +P + + IV++ G++ R KG I G + GD Sbjct: 608 AAAALYAKRMNIPLDSLDADNLIVMTGKGYIKRIDPKIFSRQNKGT-IGKKGGRMRGGDQ 666 Query: 531 FKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHML-- 586 V+F GR YA+ +P S G P T L L G T+ ML Sbjct: 667 VTKVTHCNGLDTVLFFTDRGRVYAVRAYDIPQSSTTALGTPFTRVLKLAEGETITAMLPV 726 Query: 587 ------MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDAS 640 + + L+M + G ++ NRAGK + L + + ++ D Sbjct: 727 DTASRRGSNVGEHLVMLTARGVVKKTPISEFANINRAGKRALGLQKGDRLKHVELVRDGD 786 Query: 641 DMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGE 683 +++A G +L F + + S+ G G K + A A E Sbjct: 787 GIMVAGVD-GMVLHFSMDSIRAQSRIGSGVKAMKFREASAGATE 829 >UniRef50_D2LZG6 DNA topoisomerase IV, A subunit n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZG6_BACS4 Length = 834 Score = 345 bits (885), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 232/700 (33%), Positives = 384/700 (54%), Gaps = 54/700 (7%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 L L + + + YS Y+I DRALP DGLKPVQRRI+YAM + F+K+A+TV Sbjct: 10 LPLEDVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYTDRNTSDKPFRKAAKTV 69 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLS 126 G+V+G YHPHGDS+ Y+AM+ +Q + R+ LV GN G+ D DP AAMRYTE+RLS Sbjct: 70 GNVIGNYHPHGDSSVYDAMIRQSQDWKMRHLLVQMHGNNGSIDGDPP--AAMRYTEARLS 127 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 S LL ++ + T D++ NFD +L+EP +LP+R PN+L+NG+TGI+ G ATDIPPH+L Sbjct: 128 AISAELLKDIEKDTVDFMLNFDDSLEEPVVLPSRFPNLLVNGSTGISSGYATDIPPHHLG 187 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 EV AAI ++ P +T+D L+ ++GPD+PT I ++K YE G+G + +R + Sbjct: 188 EVIDAAIHHMEHPDSTVDDLMKHIKGPDFPT-GGTIQGVDGLKKAYETGKGKIVLRGKAE 246 Query: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 ED +VI+ +P++V+ A +++++ +KK+ + ++RD++D ++V Sbjct: 247 IEDVRGGKQQIVITEIPYEVNKANLVKRMDELRIDKKVDGIAEVRDDTDRTGLR--IVVE 304 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR-PAVKNLLEILSEWLVFRRDTVRR 360 D ++++L+ TDL+ SY N NM+ + + P + L +L ++ +++ V R Sbjct: 305 LKKEADSKGILHYLYKNTDLQVSY--NFNMVAIFNKTPKLLGLKHMLEAYINHQKEVVTR 362 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEAI 417 R + L K +R HI+EGL+ A +DEVI+ IR + K A L + TE QAEAI Sbjct: 363 RTKFDLNKAKERAHIVEGLIKAISILDEVIQTIRASKDKKDAKDRLQDMYQFTEPQAEAI 422 Query: 418 LELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRR 477 + L+L L + + E SEL+K ++L+ IL+SE+ + N +K+EL+ + Y + RR Sbjct: 423 VTLQLYRLTNTDVTTLEEEASELKKLIEKLEAILSSEKNLINEIKRELKEIKKKYAEARR 482 Query: 478 SPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV-----RSAKGHDIDAPGLNYKAGDSFK 532 + +++ E ++ ++PSE V + +++ G+V RS + + PG+ K D Sbjct: 483 TVIEQEIEDLKINLEVVIPSEDVRVTVTKEGYVKRSSLRSYAASNGEPPGM--KETDRLL 540 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPI-TLPSARGQGEPLTGKLTLPPGATVDHMLMESDD 591 +++ + ++ G S+ P+ LP R + G V +++ +D Sbjct: 541 YSLEINTTDTLLLFTRKG-SFLFLPVHQLPEIRWKD----------SGQHVANLVAMDND 589 Query: 592 QKLLMA------SDAGYGFVCTFNDLVARN--------RAGKAL--ITLPENAHVMPPVV 635 +L A +D+ Y T +V + R KAL + L ++ V+ + Sbjct: 590 DDILTAIPVKEFNDSEYVLFATKLGMVKKTVLSEYKAQRNSKALMAVKLKKDDEVISVTL 649 Query: 636 IEDASDMLLAITQAGRMLMFPVSDLPQL-SKGKGNKIINI 674 + D+ A T G L F ++ + G K IN+ Sbjct: 650 SDGTHDIFFA-THTGYGLWFTEEEVSATGQRTAGVKAINL 688 >UniRef50_Q98RX7 DNA gyrase A-subunit n=2 Tax=Cryptophyta RepID=Q98RX7_GUITH Length = 877 Score = 345 bits (884), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 246/752 (32%), Positives = 408/752 (54%), Gaps = 69/752 (9%) Query: 17 AYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHP 76 +Y+ Y++ VI RALP I DGLKPV RRI++AM EL L A ++K AR VG+VLGKYHP Sbjct: 77 SYMEYALSVIYGRALPDIRDGLKPVHRRILFAMYELNLVPEAPYRKCARVVGEVLGKYHP 136 Query: 77 HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYS-ELLLS 134 HGD+A Y+++V M+Q FS R L+ G GN+G+ D DP AAMRYTE +LS S + LL Sbjct: 137 HGDTAVYDSLVRMSQEFSMRKVLILGHGNFGSIDHDPP--AAMRYTECKLSNLSVDTLLK 194 Query: 135 ELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIA 194 EL T ++V NFDG+ EP ++P+ +P+ILLNG++GIAVGMAT IPPHNL E+ ++ +A Sbjct: 195 ELDFKTVEYVYNFDGSSIEPSIMPSVIPSILLNGSSGIAVGMATSIPPHNLGEIVRSCLA 254 Query: 195 LIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR---------AVW 245 LID T +L+ + PD+PT II + + + +YE G S+ +R +V Sbjct: 255 LIDNYNITNQELIKYLPCPDFPTGGLIIGNNS-CKDLYEKGISSIILRGKINVEFSKSVK 313 Query: 246 KKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNR 305 K ++I+ +P Q++ + ++ ++A + +K + + D+RDESD + R+VI + + Sbjct: 314 KVSKYNLIITEIPFQINKSMLIAKLADLVNSKIIQGISDIRDESDRKG-IRIVIEIKRD- 371 Query: 306 VDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYR 365 D +++ + + L+ ++ + I +D +P + NL EILS +L FRR +R+ + + Sbjct: 372 YDPIKIVKIILKKSSLQITFSSYMLCI-VDKQPILVNLKEILSLFLHFRRKIIRKNIKFE 430 Query: 366 LEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEAILELKL 422 L+ +LK+ +IL+G+ ++ ID IE I+ N E K LM FGL++ Q+EAIL L+L Sbjct: 431 LKNILKKKNILKGISISLEKIDLTIEKIKKSINNLEAKCILM-EFGLSQEQSEAILNLQL 489 Query: 423 RHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQE 482 R L KLE KI + + ++L+ IL+S ++ ++K +++ ++ YG R++ L Sbjct: 490 RRLTKLESKKIDNDFEITKSSLNELKCILSSNILIDGIIKNQIKNISEIYGFPRKTLLIN 549 Query: 483 REEAKAMSEHDMLPSEPVTIVLSQM-----------GWVRSAKGHDIDAPGLNYKAGDSF 531 + E + + + I+++Q R KG GL GD Sbjct: 550 SINENIIEELETIENYESVIMITQYYIKKMFLESFESQTRGTKGK----RGLIISDGDEI 605 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHMLMES 589 + ++ + S G +Y I +P ++ +G P+ L + ++ S Sbjct: 606 SHFFSCNNRDDLIAISSGGIAYKIKVSRIPISKRNSKGTPILSILKGLENNQISSIIATS 665 Query: 590 D---DQKLLMASDAGY---GFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDML 643 + ++ L++ + G + FN++ +R G ++TL EN + V D + Sbjct: 666 NCETEKFLVLLTQKGLIKRTSISNFNNISSR---GLIILTLDENDS-LKWVRKCYNDDSV 721 Query: 644 LAITQAGRMLMFPVSDLPQLSKG---KGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI 700 + T+ G++L F S S G KG K I++ S D ++ ++P Q+ Sbjct: 722 IISTKKGKLLRFNASQKELKSTGRTSKGIKSIDLDS------NDIISDFDIIPSQAITNF 775 Query: 701 HV-------GKRKIKLRPEELQKVTGERGRRG 725 + GKR IK+ ++QK RG++G Sbjct: 776 IILLTEMGYGKR-IKVTELKIQK----RGKKG 802 >UniRef50_B5ZBW2 DNA topoisomerase IV, A subunit family protein n=22 Tax=Ureaplasma RepID=B5ZBW2_UREU1 Length = 855 Score = 343 bits (880), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 229/701 (32%), Positives = 383/701 (54%), Gaps = 38/701 (5%) Query: 17 AYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHP 76 +Y Y+ Y+I DRALP I DGLKPVQRRI+YAMSELG+ +KKSARTVG+V+GKYHP Sbjct: 20 SYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPYKKSARTVGEVIGKYHP 79 Query: 77 HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSEL 136 HGDS+ YEAMV M+Q + L+D GN G+ D + AAMRYTE+RLSK + ++L+ L Sbjct: 80 HGDSSIYEAMVRMSQDWKNNLCLLDIHGNKGSIDGDNA-AAMRYTETRLSKIASVMLTNL 138 Query: 137 GQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALI 196 + + PNFD + +EP +LP+ PN+L+NG TGIA G AT IPPHN EV A I I Sbjct: 139 KKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATSIPPHNPNEVFDALIYRI 198 Query: 197 DQPKTTLDQLLDIVQGPDYPTEAEI--ITSRAEIRKIYENGRGSVRMRAVWKKEDGA--- 251 D P ++++L+ I PD+PT EI + A K E G+ +R +K + Sbjct: 199 DHPDCSIEKLIKICPAPDFPTGGEIHDLNGCANAHKTGE-GKFVIRASIEFKTSEAKINQ 257 Query: 252 VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQV 311 ++I+++P++ + A ++++I + NK++ + ++RDESD + + +I+ V+++ V Sbjct: 258 IIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVS--IIIDTKKDVNLENV 315 Query: 312 MNHLFATTDLEKSYRINLNMIGLDGR-PAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVL 370 N+L+ T LE SY N I + R P + +L L + D + + Y L KVL Sbjct: 316 KNYLYKKTSLEISY--NTKFIAIVHRTPTLVSLSTYLDAQINHSLDVINKVDLYDLNKVL 373 Query: 371 KRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQAEAILELKLRHLAK 427 R+ I+EGL+ IDE+I+IIR D + K AL+ F T QAEAI+ ++L +L + Sbjct: 374 LRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQAEAIIMMRLHNLTR 433 Query: 428 LEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAK 487 + +R E L+++ L+ + S + N LK+++ + +G R++ L + Sbjct: 434 TDIFDLRNEWESLQQQAKILKERIKSLQVRKNYLKQKMIEFKKEFGYQRKTKLFDEFIKA 493 Query: 488 AMSEHDMLPSEPVTIVLSQMGWV-----RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQP 542 ++E M+ + + +V+S+ G++ +S + D GL K D S+ Sbjct: 494 EVNEDQMIEKQSLNLVISRDGYIKIVSKKSFESSKYDELGL--KTNDLLFYHNVINSHDR 551 Query: 543 VVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLM-----ESDDQKLL 595 ++ + S + + + R + GE L V + + + D+ +L+ Sbjct: 552 ILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKVVAVYVCNEQFKVDEHQLV 611 Query: 596 MASDAGYGFVCTFNDL-VARNRAGKALITLPENAHVMPPVVI-EDASDMLLAITQAGRML 653 + S N+L + +N +++ L EN ++ +I +D + ++AI++ G +L Sbjct: 612 LGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLIKKDHNQFVVAISKLGLVL 671 Query: 654 MFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLP 693 MF V ++ L++ KG KI+ + + D ++ + ++P Sbjct: 672 MFLVHEINCLNRLAKGIKIMKL------KPNDEISSILIVP 706 >UniRef50_C7M119 DNA gyrase, A subunit n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M119_ACIFD Length = 816 Score = 342 bits (878), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 237/686 (34%), Positives = 368/686 (53%), Gaps = 48/686 (6%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 E + L E E ++L YS+ VI+ RALP DGLKPV RRI+Y+M + G K A+ Sbjct: 13 ELIELQEEMERSFLEYSLSVIIARALPDARDGLKPVHRRILYSMYDAGYRPDRPHVKCAK 72 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 VGDV+ ++HPHGD+A Y+A+V MAQ FS +PL+DG GN+G+PD AA RYTE RL Sbjct: 73 VVGDVMSRFHPHGDAAIYDALVRMAQDFSLLHPLIDGHGNFGSPDPSTGPAASRYTECRL 132 Query: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 + + LL+ + + T D+VPN+D EP +LPAR PN+L+NG+ GIAVGMAT IP HNL Sbjct: 133 APIALELLAGIDEDTVDFVPNYDSQTVEPSVLPARFPNLLVNGSQGIAVGMATQIPSHNL 192 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245 EV A LID P+ T+D+L+ V GPD+PT II R IR Y GRGSV++RAV Sbjct: 193 GEVVDAIAYLIDHPEATVDELMRFVPGPDFPT-GGIILGRDGIRDAYRTGRGSVKLRAVA 251 Query: 246 KKEDG----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 E+ +V++ +P Q S + ++I + K L + D+++ S + TR VI Sbjct: 252 TIEEARSGYQIVVTEIPFQTSVEVIADKIRHLVEEKLLEGIRDMKNFS-AGSETRFVIEL 310 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 + + + + V+N+L+ T L+ S+ I + + +DG P NLL + ++ +R+ +RRR Sbjct: 311 KRD-ANPNVVLNNLYRLTPLQTSFPIQMLAL-VDGAPRTLNLLGLCQIYVDHQREVIRRR 368 Query: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSR----FGLTETQAEAI 417 +RL K +RLHI+EGLL +D VI IR ++ A + FG +E QA I Sbjct: 369 SEFRLGKARERLHIVEGLLSCIDQLDAVIATIRASEDRAAARAALMAEPFGFSELQANHI 428 Query: 418 LELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRR 477 L++ L L +L ++ E + L +L+ ILA ++++ ++K E+ A Y RR Sbjct: 429 LDMTLGRLTRLGREELEEEAATLRATIAELEAILADAQRLSAVVKDEMLAATAEYRQARR 488 Query: 478 SPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDA--------PGLNYKAGD 529 + + + + D++ EP+ +++S+ G++++ A G K D Sbjct: 489 TRFE--VDPGDFAAEDLIEDEPIVVLISRSGYIKAVPESSFKAQGRGGRGVVGARVKDED 546 Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP----SARGQGEPLTGKLTLPPGATVDHM 585 + ++ S GR Y + LP SARG T + L P A + + Sbjct: 547 EIAHVISSSMLSRLLVFSSRGRVYQLRGYELPKLERSARG-----TALVNLVPLADDERI 601 Query: 586 --LMESDDQKLLMASDAGYGFVCTFNDLVARN---------RAGKALITLPENAHVMPPV 634 +M + D DA F T N +V R R G I + + ++ V Sbjct: 602 TSVMGTKD----FPEDADLVFF-TRNGMVKRTAMAEYARSRRDGIIAIDVRGDDELVSVV 656 Query: 635 VIEDASDMLLAITQAGRMLMFPVSDL 660 V + D ++ T+ G++L FP++++ Sbjct: 657 VATEEHDGVV-FTKRGQVLRFPLAEV 681 >UniRef50_Q04F36 DNA topoisomerase IV subunit A n=1 Tax=Oenococcus oeni PSU-1 RepID=Q04F36_OENOB Length = 811 Score = 341 bits (875), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 228/696 (32%), Positives = 370/696 (53%), Gaps = 48/696 (6%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 + L+L + + YS Y+I +RALP I DGLKPVQRRI++AM+E G ++KSA+ Sbjct: 8 QELSLEDVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYQHAYRKSAK 67 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESR 124 VG+V+G YHPHGDS+ Y+A+V M+Q + R PL+D GN G+ D DP AAMRYTE+R Sbjct: 68 AVGNVMGNYHPHGDSSIYDALVRMSQNWKMREPLIDMNGNNGSIDNDPP--AAMRYTEAR 125 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 LS + +L++L Q D V NFD T EP +LP+R+PN+L+NG +GI+ G AT+IPPHN Sbjct: 126 LSMIAGDMLTDLDQQAVDMVLNFDDTRYEPTVLPSRIPNLLVNGASGISAGYATEIPPHN 185 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA- 243 L EV A I L+ P +L+ L+ V GPD+PT II I+ Y GRG V +RA Sbjct: 186 LGEVINALIYLLSHPAASLEDLMKYVSGPDFPT-GGIIQGLDGIKNAYTTGRGKVYLRAK 244 Query: 244 -------VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 KK+ + I+ LP++V+ + ++ +I NK + + ++RD++ E Sbjct: 245 TEIKQLRAGKKQ---IEITELPYEVNKSELVARIDEIRLNKDVNGITEVRDDTSREG--L 299 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 L+ + S + + ++++LF TDL+ +Y N+ I RP L + LS +L FR++ Sbjct: 300 LIAIELSKDANAEGILDYLFKKTDLQIAYNFNMTAIN-KQRPVSVGLKQALSAFLDFRKE 358 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQ 413 +RRR + L+K R I+EGL+ +DEV+ IR + K A L+ +F ++ Q Sbjct: 359 VIRRRTEFELKKAQARQEIVEGLIKMLSILDEVVATIRGSESRKNAKENLIKKFQFSDPQ 418 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 AEAI+ L+L L + + ++ E L K+ + IL +++N +L+ EL+ + Y Sbjct: 419 AEAIVTLQLYRLTNTDVVALQNEHDRLTKQISEFNSILKETKELNKVLRNELKEIEKKYS 478 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKA 533 + RRS +Q + M+ +E V + +++ G+ + A A N D + Sbjct: 479 NPRRSQIQTEVSQLKIDTAVMIANEDVIVQITKNGYAKRASFRSYKATDDNGLTDDDYPV 538 Query: 534 AVKGKSNQPVVFV-DSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLMESD 590 + + +F+ + G L + + GE L+ +++ G D ++++ Sbjct: 539 YLAKVNTLSSLFIFTNKGNLIYRQVYELADTKWKDVGEHLSQEIS---GLAEDEIVIKVF 595 Query: 591 DQKLLMASDAGYGFVCTFNDLVARN--------------RAGKALITLPENAHVMPPVVI 636 D K L + FV T +D + RA KA+ +N V+ V Sbjct: 596 DFKDLKQTGT---FVFTSSDAFVKQVDKNALNPTKYYKKRASKAIAIKGKN--VLVSVAF 650 Query: 637 EDASDMLLAI-TQAGRMLMFPVSDLPQLS-KGKGNK 670 + + L+ + TQ G + FP+ ++ ++ K G K Sbjct: 651 AASQNHLVVMATQKGYLYKFPIGEIALMTAKSSGAK 686 >UniRef50_C0ZEN0 DNA topoisomerase IV subunit A n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZEN0_BREBN Length = 847 Score = 337 bits (865), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 194/555 (34%), Positives = 318/555 (57%), Gaps = 22/555 (3%) Query: 18 YLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPH 77 + +Y+ VI+ RA+P DGLKPVQRRI+YAM + G ++KSA+TVG V+G YHPH Sbjct: 19 FGDYANLVILSRAIPDARDGLKPVQRRILYAMYQEGNTNDKPYRKSAKTVGYVMGTYHPH 78 Query: 78 GDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSEL 136 GDSA YE MV MAQ + R L+ G GN+G+ D DP AAMRYTESRLS + LL ++ Sbjct: 79 GDSAIYETMVRMAQWWKMRQVLIQGHGNFGSLDADPP--AAMRYTESRLSALANELLRDI 136 Query: 137 GQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALI 196 + T ++PN+D + Q+P +LP+R PN+L+NG GIAVG ATDIP HNL EV AA+A + Sbjct: 137 EKDTVTFIPNYDNSAQQPAVLPSRFPNLLVNGAAGIAVGFATDIPTHNLGEVIDAAVAQM 196 Query: 197 DQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED------G 250 P +LD+L+ V+GPD+PT I+ + IRK +E GRG +R E+ Sbjct: 197 KNPNISLDELMQHVKGPDFPT-GGIVQGLSGIRKAFETGRGQFIIRGKTHVEEPKGGKIK 255 Query: 251 AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDES---DHENPTRLVIVPRSNRVD 307 +V+S +P++V ++++ QI + +K+ +RDE+ + E ++V D Sbjct: 256 KIVVSEIPYEVVKSKLVGQIDELVMERKIEGALAVRDETGRKEAEQKKVRIVVDIRKEAD 315 Query: 308 MDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367 ++N+L+ TDL+ Y N+N+I +G L +L ++ +++ V R Y L+ Sbjct: 316 EQAILNYLYKNTDLQIYYNYNMNVIH-EGTIRQMGLKALLGAYIDHQKEVVTNRCQYDLD 374 Query: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQAEAILELKLRH 424 + R HI+EGL+ A + ++++ I + + + K +M ++G T+ QA+AIL ++L Sbjct: 375 RKQSREHIVEGLIRAKSILRQIVDTIMDSEDRADAKKNIMEKYGFTDNQADAILSIQLAS 434 Query: 425 LAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQERE 484 L +L+ +K+ E + L KE ++L+ ILASE+K+ ++ EL + Y ++R + +Q Sbjct: 435 LTRLDIVKLEKELATLAKEIEELKSILASEKKLIQVITGELNEIKKKYAEERLTEIQGEI 494 Query: 485 EAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG-----LNYKAGDSFKAAVKGKS 539 E + + +E + L+ G+++ + G K GD + ++ + Sbjct: 495 EEIKIDIAMQINAEDCIVTLTNEGYIKRTSPRSFKSVGGTLETCGVKEGDRVRYFMETNT 554 Query: 540 NQPVVFVDSTGRSYA 554 + +F G+ +A Sbjct: 555 SHTALFFTQDGKYFA 569 >UniRef50_UPI00016C558B DNA gyrase subunit A n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C558B Length = 883 Score = 335 bits (858), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 232/695 (33%), Positives = 378/695 (54%), Gaps = 66/695 (9%) Query: 16 NAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYH 75 ++YL Y+ VI+ RALP + DGLKP QRRI+ AM++LGL ++ K A +G+ + +YH Sbjct: 34 DSYLTYAQSVIISRALPDVRDGLKPSQRRILVAMNDLGLGPASSTSKCAGIIGETMKRYH 93 Query: 76 PHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSE 135 PHGD++ Y+++V MAQ ++ RY LV GQGN+G+ AA RYTE+RL+ + LL + Sbjct: 94 PHGDASIYDSLVRMAQDWNLRYRLVHGQGNFGSIAGLPP-AAHRYTEARLTPAAGELLED 152 Query: 136 LGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIAL 195 L + T D++ N+DG +EP +LP + PN+L+NG+ GIAVGMAT IPPHNLREV +A + L Sbjct: 153 LERDTVDFIDNYDGKYREPLVLPGKFPNLLVNGSDGIAVGMATHIPPHNLREVCKALVLL 212 Query: 196 IDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA---VWKKEDG-- 250 +D P TL L+ I+ GPD+PT II R + + Y G G + +RA V ++ G Sbjct: 213 LDNPGATLADLIQIIPGPDFPT-GGIIMGRQGLLEAYARGAGKITLRARAQVMEEVKGRS 271 Query: 251 -AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHEN--PTRLVIVPRSNRVD 307 +++IS +P QV+ ++E+IA ++ +++P V +RDES N P RL++ + + D Sbjct: 272 PSILISEVPFQVTRNAIVEEIAHLVKEERIPDVSGVRDESSARNGEPVRLIVEIKRGK-D 330 Query: 308 MDQVMNHLFATTDLEKSYRINLNMIGL-DGRPAVKNLLEILSEWLVFRRDTVRRRLNYRL 366 V+N L+ T L+K+ +++ M+ L DGRP L E+L ++L R +RRR + L Sbjct: 331 PHLVLNQLYQYTKLQKT--VSIIMLALVDGRPRELTLKEMLQKFLDHRVHVIRRRTEFLL 388 Query: 367 EKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPK---------PALMSR-------- 406 + KR H+LEG L+A +I++VI+I R N E K ALM R Sbjct: 389 REAKKRGHVLEGQLIAIADIEQVIQICRTSPNRAEAKARLQGLAVPAALMQRAIGEGAFA 448 Query: 407 -----------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASER 455 + +TE QAEA++ L+L LA LE +I E +L + + +L+ + Sbjct: 449 ALQRELGAVAEYRMTEQQAEAVVNLRLGQLAALESEEILKEYLQLRELIRGYETLLSDDA 508 Query: 456 KMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVR---- 511 ++ +++++L+ A YGDDR++ + ++ + D++ EP + +S G+V+ Sbjct: 509 NIHAVIREDLERMAAKYGDDRKTEVS--DDGGDVDMEDLIVDEPNVVTISHEGFVKRMAL 566 Query: 512 ---SAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQ 566 +G + D + + ++ +TGR Y + +P+A Sbjct: 567 TEYRVQGRGGKGVQGGLRDNDFVEHFFVASTKAYLLCFANTGRMYWLKVYRIPTAGRTSP 626 Query: 567 GEPLTGKLTLPPGATVDHMLMES---DDQKLLMASDAGYGFVCTFNDLVARN---RAGKA 620 G + L+L G + ++ + LLMA+ G DL+A + + G Sbjct: 627 GRAIANVLSLAEGEKISSIVPVREFVEGAHLLMATRQG---TVKKTDLMAYSNVRQGGII 683 Query: 621 LITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 ITL E ++ V + A+D ++ TQ G + F Sbjct: 684 GITLDEGDELI-NVALTRANDEVVLSTQKGMAIRF 717 >UniRef50_C4Z0V3 DNA gyrase subunit A n=29 Tax=Bacteria RepID=C4Z0V3_EUBE2 Length = 769 Score = 334 bits (856), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 195/544 (35%), Positives = 312/544 (57%), Gaps = 42/544 (7%) Query: 4 MAERLALHEFTE---NAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 MAE++ E++E +Y++YSM VI RALP + DGLKPVQRR++YAM LGLN Sbjct: 1 MAEKIIRTEYSEVMQKSYIDYSMSVITARALPDVRDGLKPVQRRVLYAMDRLGLNYDKPH 60 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 +KSAR VGD +GKYHPHGDS+ YE +V+++Q F LVDG GN+G+ + + AAMRY Sbjct: 61 RKSARIVGDTMGKYHPHGDSSIYETLVVLSQDFKKGMALVDGHGNFGSIEGDGA-AAMRY 119 Query: 121 TESRLSKYSE-LLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 179 TE++L K+++ + L++L + D+VPNFD T +EP++LP R+PN+L+NG GIAVGM T+ Sbjct: 120 TEAKLKKFTQDVYLADLDKNVVDFVPNFDETEKEPEVLPVRVPNLLVNGADGIAVGMTTN 179 Query: 180 IPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSV 239 IPPHNL EV A A +D T D+L+ + GPD+PT I+ +++E+ IYE G G + Sbjct: 180 IPPHNLSEVVDAVCAYMDNEDITTDELMQLCPGPDFPT-GGIVINKSELGAIYETGTGKI 238 Query: 240 RMR-------AVWKKEDGAVVISALPHQVSGARV---LEQIAAQMRNKKLPMVDDLRDES 289 ++R A + E +VI+ +P+ + GA + + + + + KK + D+ +ES Sbjct: 239 KLRGKVIFEPAKNRSEKDKLVITEIPYTMIGANIGKFISDVVSLIETKKTTDIVDISNES 298 Query: 290 DHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSE 349 E R+V+ + N D+ + N L+ T LE ++ +N+ I +DGRP + +I+ Sbjct: 299 SKEG-IRIVLELKKN-ADVKNLENLLYKKTKLEDTFGVNMLAI-VDGRPETLGIKDIIKH 355 Query: 350 WLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLN---------------------IDE 388 + F+ + R+ LEK I EGL+ A ++ Sbjct: 356 HINFQYELATRKYTTLLEKEKANREIKEGLIRACDIIDLIIEILRGSANLKMAKDCLVNG 415 Query: 389 VIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQ 448 +E I+ + E + TE QA AILE++L L LE + ++ E E K+ ++ + Sbjct: 416 NVEGIKFKSEQSKKQAAGLDFTERQAGAILEMRLYKLIGLEILNLQKEYDECVKKIEKYE 475 Query: 449 GILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMG 508 IL S ++M ++K +L + YG +RR+ +++ E A+ E +P V ++ + G Sbjct: 476 KILGSRKEMAKVIKADLLNIKKEYGVERRTVIEDGE--AAVFEEKKIPEMEVMFIMDRFG 533 Query: 509 WVRS 512 + R+ Sbjct: 534 YART 537 >UniRef50_B9SK06 DNA gyrase subunit A, chloroplast/mitochondrial, putative n=5 Tax=Magnoliophyta RepID=B9SK06_RICCO Length = 540 Score = 330 bits (847), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 184/395 (46%), Positives = 257/395 (65%), Gaps = 18/395 (4%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 LH+ AY+ Y+M V++ RALP + DGLKPV RRI++AM ELGL++ FKK AR VG+ Sbjct: 114 LHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARVVGE 173 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKY 128 VLGK+HPHGDSA Y+A+V MAQ FS R PL+ G GN+G+ D DP AAMRYTE RL Sbjct: 174 VLGKFHPHGDSAVYDALVRMAQDFSLRSPLIQGHGNFGSIDADPP--AAMRYTECRLEAL 231 Query: 129 SE-LLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 +E +LL++L T D+VPNFD + +EP +LPARLP +LLNG++GIAVGMAT+IPPHNL E Sbjct: 232 TEAVLLADLELDTVDFVPNFDDSQKEPSLLPARLPTLLLNGSSGIAVGMATNIPPHNLGE 291 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 + ALI P+ TL +LL+ + GPD+PT +I I + Y GRG + +R + Sbjct: 292 LVDVLCALIHNPEATLQELLEYMPGPDFPT-GGLIMGNLGILEAYRTGRGRIIVRGKTEV 350 Query: 248 ED-------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 E AV+I +P+Q + A ++E+IA + NK L V D+RDESD ++ V Sbjct: 351 ESLDSKTKRTAVIIKEIPYQTNKASLVEKIAELVENKNLDGVSDIRDESDRSGMRIVIEV 410 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIG-LDGRPAVKNLLEILSEWLVFRRDTVR 359 R + D V+N+L+ T L+ S+ + NM+G LDG+P L ++L + FR V Sbjct: 411 KRGS--DPSIVLNNLYRLTPLQSSF--SCNMVGILDGQPKQMGLKDLL-QASYFRCSVVE 465 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR 394 RR ++L + +R HI+EG+++ N+D VI II+ Sbjct: 466 RRARFKLLQAQERRHIVEGIVIGLDNLDGVIRIIK 500 >UniRef50_Q7NB60 ParC/GyrA n=1 Tax=Mycoplasma gallisepticum RepID=Q7NB60_MYCGA Length = 797 Score = 325 bits (832), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 207/653 (31%), Positives = 359/653 (54%), Gaps = 19/653 (2%) Query: 21 YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDS 80 Y+ Y+I +RALP I DGLKPVQRR++Y M LGL + ++KSA TVG+V+GK+HPHGDS Sbjct: 23 YAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKSYRKSAATVGEVIGKFHPHGDS 82 Query: 81 ACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGT 140 + YEA+V M Q + PL+D QGN G+ D + AAMRYTE+RLS Y L+L + + T Sbjct: 83 SIYEALVRMTQSWKNNIPLIDMQGNNGSIDGDNA-AAMRYTEARLSHYGNLMLENINKET 141 Query: 141 ADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPK 200 ++V NFD + EP +LP+ LPN+L+NG+TGIA G AT+IPP NL+E+ I ID P Sbjct: 142 VNFVNNFDDSEVEPTILPSLLPNLLVNGSTGIAAGYATNIPPFNLKELIDVIIHRIDSPN 201 Query: 201 TTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGAVVISALPHQ 260 L+ +L ++ GPD+PT II I+ Y G+G + +RA E+ +V++ +P + Sbjct: 202 CKLESILKLMPGPDFPT-GGIILDDDGIKNAYLTGKGKIVIRAKIVNENDQLVVTDIPFE 260 Query: 261 VSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVD---MDQVMNHLFA 317 + A ++ I + KLP ++++RDESD + +V ++N D + + N+L+ Sbjct: 261 TNKASIIRSIEEILEANKLPQLEEVRDESDR---FGIRVVLQTNTKDEKVLATIKNYLYK 317 Query: 318 TTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILE 377 T L+ +Y N N++ +P ++ L +L +R +++ L+K KRL ++ Sbjct: 318 YTQLQINYSFN-NVVIDQKKPIQMSIFNYLDSYLNHAYTILRNAISFDLKKDQKRLEVIN 376 Query: 378 GLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEAILELKLRHLAKLEEMKIR 434 GL+ A ID++I II+ + + A L++++ + QAEAI+ L+L L + + ++ Sbjct: 377 GLIKATSIIDQIILIIKKSKDKQDAINNLINKYQFSAIQAEAIVSLRLYRLTNTDILALK 436 Query: 435 GEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDM 494 E+ L+ Q Q +L + +N+ LK+ L++ + + RRS + E ++E + Sbjct: 437 EEKKSLDTNIKQYQLLLKDQNALNDHLKEILRSYKKLFNTKRRSTIGGNIEKLVINEASI 496 Query: 495 LPSEPVTIVLSQMGWVRSA---KGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGR 551 + + + +V S G +++ + ++ L K D +K S V F+ + G Sbjct: 497 IEKKELYLVSSVDGLIKTIAYDQNKQLNPTSLKIKQDDYLSDLIKVSSLNKVAFITNYGN 556 Query: 552 SYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLMESD-DQKLLMASDAGYGFVCTF 608 I+ + A R G + T+ + ++ SD + ++++ S G + Sbjct: 557 VVVINAHKIKQAKPREIGMDINELTTIKDNEKIVKLVELSDQNDRIVLVSKYGMIKQISV 616 Query: 609 NDLV-ARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDL 660 NDLV ++ ++L ++ ++ +I D + L+ IT+ L F ++++ Sbjct: 617 NDLVNIKSTKPTTCMSLKDDDELVCANLISDPNAELIIITKNAYALRFFINEV 669 >UniRef50_C5J6X2 Topoisomerase IV subunit A n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J6X2_MYCCR Length = 864 Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 183/511 (35%), Positives = 289/511 (56%), Gaps = 13/511 (2%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 +L ++ Y+ YVI +RA+P + DGLKPVQRRI+Y+M LGL +KKSAR VG Sbjct: 12 SLDNIVAEKFIRYAKYVIQNRAIPDVRDGLKPVQRRILYSMWMLGLKKEKAYKKSARVVG 71 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 DV+GKYHPHGDS+ Y+A+V M+Q + PLVD GN G+ DD + AAMRYTE RL + Sbjct: 72 DVIGKYHPHGDSSIYDALVRMSQEWKINIPLVDMHGNKGSIDDDPA-AAMRYTEVRLEEI 130 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 S L+L L + W PNFD + +EP +LP +PN+L+NG GIA G AT+IPPHNL EV Sbjct: 131 SALMLELLNKNVISWAPNFDDSEKEPTVLPTIVPNLLVNGAIGIASGFATEIPPHNLSEV 190 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA----V 244 AIA+I K T +L I+ GPD+PT I+ I + G+G + + A V Sbjct: 191 IDGAIAMIKNEKITNSELQSIIPGPDFPT-GGIVYDNGGISDAFSKGKGRISLVAKYEIV 249 Query: 245 WKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 K +D ++ IS +P+ ++ A ++ QI +K+ + ++ D+SD L+ + Sbjct: 250 NKNKDISIQISQIPYGIAKANLIRQIDDIRFEEKVYGIKEVIDQSDRNGI--LISIDLEA 307 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 364 ++D V+N+L TD++ Y N I + P + +L E++ +L ++ + ++Y Sbjct: 308 DANVDLVVNYLLQKTDMQIYYSYNSVAI-CNNSPKLVSLSEMIKYYLDHLKNIKLKEIDY 366 Query: 365 RLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----LMSRFGLTETQAEAILEL 420 L K KR I++G L DEVI++IR D K L++ FG T+ QAEAI ++ Sbjct: 367 DLFKSQKRYEIIQGFLKVADITDEVIKVIRASDNSKIGVIKDLIAHFGFTQIQAEAIAQM 426 Query: 421 KLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPL 480 +L L+K+++ E ELE + + L + L K L+ +G R++ + Sbjct: 427 RLYRLSKIDQENFLSESKELENKIELLNNLKNDSTAFKKFLIKTLKQVQNNFGQPRKTQI 486 Query: 481 QEREEAKAMSEHDMLPSEPVTIVLSQMGWVR 511 +++ + ++ D++ E + ++Q G+ + Sbjct: 487 LKKDFSIKINHEDLIKDENIYFGITQQGYYK 517 >UniRef50_B2URM6 DNA gyrase, A subunit n=5 Tax=Verrucomicrobia RepID=B2URM6_AKKM8 Length = 873 Score = 322 bits (826), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 240/759 (31%), Positives = 377/759 (49%), Gaps = 88/759 (11%) Query: 17 AYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHP 76 ++L+YSM VI+ RALP + DGLKP QRRI+YAM EL L+ K +K ++ VGD +G YHP Sbjct: 18 SFLDYSMSVIISRALPDVRDGLKPSQRRILYAMKELNLSPGGKTRKCSKIVGDTMGNYHP 77 Query: 77 HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSE 135 HGD+A Y +V MAQ +S R LV GQGN+G PD DP AA RYTE++LS L+++ Sbjct: 78 HGDAAIYGTLVNMAQDWSMRDILVIGQGNFGTPDGDPP--AAARYTEAKLSGMGVALMAD 135 Query: 136 LGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIAL 195 L + T D+VP +D EP + P+ PN+L+NG TGIAVGMAT++PPHNL EV A+ Sbjct: 136 LDKDTVDFVPTYDNEHTEPTVFPSAFPNLLVNGGTGIAVGMATNMPPHNLGEVVDGICAV 195 Query: 196 IDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA-----VWKKEDG 250 ID P T+++L ++GPD+PT +++ + I + GRGSVR+R V Sbjct: 196 IDNPHMTVEELRQYIKGPDFPTGGDVL-GFSGIDNYFRTGRGSVRIRGKIDMEVTDSGKD 254 Query: 251 AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQ 310 ++I +P+ V+ A + E+IA ++K L + +RD SD + + + R R + Sbjct: 255 LLIIREVPYGVNRAALQERIAELYKDKILTDISGIRDLSDEKTCIEIEL-KRDARPQV-- 311 Query: 311 VMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVL 370 VMN L+ T +E S+ +N+ I D RP +++ ++ ++ RR+ V RR Y L Sbjct: 312 VMNQLYKLTSMETSFAVNMLAIH-DNRPKTLAMMDAINFYIEHRREVVVRRTRYLLGDAE 370 Query: 371 KRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMS---------------------- 405 K LE L+A ++D+ I IIR N DE + L + Sbjct: 371 KDAERLEAFLLALHHMDDFISIIRDSKNRDEARERLQNYTFSTQTAESLGILIRSQASIQ 430 Query: 406 --RFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKK 463 R+ TE Q +IL+L+L L LE KI GE +EL ILA+E ++ ++K Sbjct: 431 GDRYVFTERQVNSILDLRLYQLTALENDKISGEYAELLVRIKDYLDILANESRVLGIVKD 490 Query: 464 ELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGL 523 EL+A Y R + + + M+ D++P++ + + ++ G+++ + + Sbjct: 491 ELKAIKDKYATPRVTRIIPF--SGDMAIEDLIPNDTMIVTITHSGYIKRTNSAEYR---V 545 Query: 524 NYKAGDSFKAAVK-----------------GKSNQPVVFVDSTGRSYA--IDPITLPSAR 564 + G KAA +++ ++F +TGR Y + I + Sbjct: 546 QARGGKGVKAATTRGAKKDAEADFIEHLFAAQNHDYLMFFTNTGRVYVDRVYEIDEAARS 605 Query: 565 GQGEPLTGKLTLPPGATVDHML-----MESDDQKLLMASDAGYGFVCT---------FND 610 QG + L L P + +L ++ + A +G T ND Sbjct: 606 AQGRNIKNLLDLQPEEAIAAILRLERRVDEKGNDITFAEGSGNVVFATKDGTVKKTSLND 665 Query: 611 LVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNK 670 +AG I L E ++ + A +++L +T G + FP DL + +G Sbjct: 666 FANYRKAGIIAINLEEGNSLVNAELTSGADEIVL-VTHDGMSIRFPEEDL----RTQGRN 720 Query: 671 IINIPSAEAARGEDGLAQLYVLPPQSTLTIH----VGKR 705 I + R D + L ++ PQ TL + +GKR Sbjct: 721 TIGVRGIR-PRAGDYVVALAIVDPQKTLLVASENGLGKR 758 >UniRef50_O52166 Topoisomerase IV subunit n=2 Tax=Mycoplasma hominis RepID=O52166_MYCHO Length = 933 Score = 322 bits (825), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 200/552 (36%), Positives = 311/552 (56%), Gaps = 22/552 (3%) Query: 21 YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDS 80 YS Y+I RA+P DGLKPVQRRI+Y+M L L S FKKSAR VGDV+G+YHPHGDS Sbjct: 32 YSKYIIQQRAIPDARDGLKPVQRRILYSMWNLHLKNSEPFKKSARIVGDVIGRYHPHGDS 91 Query: 81 ACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGT 140 + YEA+V MAQ + +PL++ GN G+ DD + AAMRYTESRL K SEL+L +L + Sbjct: 92 SIYEALVRMAQDWKSNFPLIEMHGNKGSIDDDPA-AAMRYTESRLEKISELMLKDLDRKV 150 Query: 141 ADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPK 200 PNFD + EP +LPA PN+L+NG GIA G AT+IPPHNL EV A IALI P Sbjct: 151 VKMAPNFDDSEYEPIVLPALFPNLLVNGAKGIAAGFATEIPPHNLGEVIDATIALIKNPT 210 Query: 201 TTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG----SVRMRAVWKKEDGA----V 252 ++++L +IV+GPD+PT A II EI+K +G+G S + V+ K+D + + Sbjct: 211 ISIEELSEIVKGPDFPTGA-IINGINEIKKALSSGQGRITISSKYHYVYDKKDESKIIGI 269 Query: 253 VISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVM 312 I +P V ++++ I A +KK+ + ++ D++D + + + + + D ++ Sbjct: 270 EIIEIPFGVVKSKLVADIDAIAIDKKISGIKEVLDQTDRNGIS--IFIQLEDGANADAII 327 Query: 313 NHLFATTDLEKSYRINLNMIGLD-GRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLK 371 +L T+L SY + NM+ +D RP + NL L +L ++ +NY L+K Sbjct: 328 AYLMNKTELSISY--SYNMVAIDNNRPVILNLYSALIAYLSHLKEVNINGINYDLKKFKL 385 Query: 372 RLHILEGLLVAFLNIDEVIEIIRNEDEPKP----ALMSRFGLTETQAEAILELKLRHLAK 427 RL I+EG + DEVI +I+ D K ALM++F +E QA AI EL+L L++ Sbjct: 386 RLEIVEGFIKVAEISDEVIHLIKESDNSKKGVILALMNKFKFSELQATAIAELRLYKLSR 445 Query: 428 LEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAK 487 +++++ + E+ LE + + +L + + N L K+L Y R + + +++ K Sbjct: 446 MDQIEFQEEKKNLEIQIENCNKLLNDKWEFNQYLIKQLLEIKNQYSKPRLTEISDQKIDK 505 Query: 488 AMSEHDMLPSEPVTIVLSQMGWVR--SAKGHDIDA-PGLNYKAGDSFKAAVKGKSNQPVV 544 + + +E + +++ G+ + S K + + K D+ K S ++ Sbjct: 506 EIDHKLLTKNEDFYLYITKDGYYKKISLKVYTSNELSTFKLKEEDNVFYFDKVNSLSKIL 565 Query: 545 FVDSTGRSYAID 556 F + G + ID Sbjct: 566 FFTNLGNYFIID 577 >UniRef50_C6WIH8 DNA topoisomerase (ATP-hydrolyzing) n=15 Tax=Actinomycetales RepID=C6WIH8_ACTMD Length = 1143 Score = 322 bits (824), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 227/652 (34%), Positives = 348/652 (53%), Gaps = 46/652 (7%) Query: 60 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 119 F V + +GKYHPHGD+A Y+AMV +AQ FS PL+DG GN+G+PDD AA R Sbjct: 395 FVVDGLVVHNCMGKYHPHGDTAIYDAMVRLAQDFSLNTPLIDGHGNFGSPDDGP--AASR 452 Query: 120 YTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 179 YTE+R+S + LL+ EL + T ++ PN+DG+L EP +LPA PN+L+NGT+GIAVGMAT+ Sbjct: 453 YTEARMSGAAMLLVGELDEDTVEFRPNYDGSLTEPAVLPAAFPNLLVNGTSGIAVGMATN 512 Query: 180 IPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSV 239 + PHNL EV AA L+ P L++L++ + GPD PT ++ E+RK YE GRG V Sbjct: 513 MIPHNLGEVVAAARHLVKHPDADLEKLMEFIPGPDLPT-GGMLLGLDEVRKAYETGRGVV 571 Query: 240 RMRAV-------WKKEDGAVVISALPHQVSGARVLEQIAAQM-RNKKLPMVDDLRDESDH 291 RMRA + A+ ++ LP+ V +++E+I ++ ++K+L + D++D +D Sbjct: 572 RMRATVTTGPLEGSRGRQAITVTELPYGVGPEKIIEKITDEVNKSKRLTGIADVKDLTDR 631 Query: 292 ENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWL 351 EN RLVI + V+ ++ L+ T LE+S+ IN N++ +DG+P L +L +L Sbjct: 632 ENGIRLVIECKVG-VNPQALLADLYRLTPLEQSFGIN-NLVLVDGQPQTLGLKALLEVFL 689 Query: 352 VFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFG 408 R + V RR +R K RLH+++GLL A ++ID+VI++IR N K L+S F Sbjct: 690 AHRYEVVTRRTRFRRRKREDRLHLVDGLLKALIDIDKVIKLIRRSENAQAAKEGLVSTFA 749 Query: 409 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 L+ETQA IL+ LR L + + +++ GEQ L E +L IL ++ + ++ EL Sbjct: 750 LSETQAAYILDTPLRRLTRFDSVELEGEQERLRGEIAELSTILDDDKVLRRVVSNELGKV 809 Query: 469 AQAYGDDRRSP-----LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGL 523 A+ +RR+ L+E A S + +P +VLS G V +A Sbjct: 810 AKDLSAERRTTLLDGDLKEVLAASRTSGPLEVADDPCQVVLSATGLVARTAAESEEAVEG 869 Query: 524 NYKAG----DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPG 579 ++G D+ A V + V+ V S GR++ D + LP QGE G L+L G Sbjct: 870 RKRSGRAKHDAVAATVHTTARGQVLLVTSRGRAFKTDVLPLP-VLPQGE---GTLSLSGG 925 Query: 580 ATVDHM--------------LMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP 625 V + L E+D L + + G VC V + +I L Sbjct: 926 VPVRELVGLEAGERVVGIAPLGETDSPGLALGTKQGVVKVCAPEWPVRSDEF--EVIGLK 983 Query: 626 ENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDL-PQLSKGKGNKIINIPS 676 V+ + D + L+ ++ +L + S + PQ +G G I +P Sbjct: 984 AGDEVVGAQWLADGQEALVFVSSEASLLRYAASLVRPQGLRGGGMAGITLPG 1035 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 12/82 (14%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 E++YL Y+ VI RALP DGLKPV RRI+++M+E ++ + KS+R VGD Sbjct: 33 EDSYLEYAYSVIHSRALPDARDGLKPVHRRILFSMNEQNHRPTSPYVKSSRVVGD----- 87 Query: 75 HPHGDSACYEAMVLMAQPFSYR 96 C+ L++ P R Sbjct: 88 -------CFVRGALVSTPSGVR 102 >UniRef50_A7AVY4 DNA gyrase A subunit, putative n=5 Tax=cellular organisms RepID=A7AVY4_BABBO Length = 1051 Score = 321 bits (823), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 192/504 (38%), Positives = 294/504 (58%), Gaps = 51/504 (10%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 L L + +++ Y++ +I+ RALP DGLK V RRI++AM + L AS ++K A+ V Sbjct: 101 LELCDELSQSFMKYALSIILGRALPDARDGLKIVHRRILWAMQVMKLGASTPYRKCAKVV 160 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 GDVLGKYHPH D + Y+A+ ++Q F R PLVDG GN+G+ DDP AAMRYTE RLS Sbjct: 161 GDVLGKYHPHSDKSVYDALCRLSQLFMMRVPLVDGHGNFGSTDDPP--AAMRYTECRLSP 218 Query: 128 YSE-LLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 +SE LLL+E+G+ T D +PNFD T EP +LP+++P +L+NG++GIAVG+AT+IPPHN Sbjct: 219 FSEKLLLAEMGKNTVDMLPNFDSTEMEPTVLPSKVPLLLINGSSGIAVGLATNIPPHNPE 278 Query: 187 EVAQAAIALIDQPKTTLD--QLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 E+ +AA +L+ + +D +LL+IV+GPD+PT I+TS +RKIY G+GS+ ++A Sbjct: 279 EILKAA-SLMAKNHGNVDTEELLNIVRGPDFPTGGHIVTSIDALRKIYTTGKGSIMLQAK 337 Query: 245 W-----------KKEDGAVV--------------------ISALPHQVSGARVLEQIAAQ 273 + K+E VV + LP+ V + V+ I+ Sbjct: 338 YIYEERIKPRNSKRESDVVVNTYSDPSHLSFTSGSRVSIIVKELPYNVRLSDVMLAISKA 397 Query: 274 MRNKKLPMVDDLRDESDHENPTRLVIVPR---SNRVDMDQVMNHLFATTDLEKSYRINLN 330 + L + DLRDESD RLVI + + ++++++M L + L ++ N Sbjct: 398 VETGALRGISDLRDESD-RGGLRLVIELKKHITTHLEVEEIMQKLKKMSGLCSFFKCNF- 455 Query: 331 MIGLDG---RPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNID 387 I LD +P +L L WL FR TVR+R+ + E+ +RL+I++G +AF ID Sbjct: 456 -IALDSSGTKPVRLSLYSALKIWLEFRVQTVRKRIERQREQAKERLNIVKGFAIAFNKID 514 Query: 388 EVIEIIRNEDEPKPALM----SRF-GLTETQAEAILELKLRHLAKLEEMKIRGEQSELEK 442 +++ ++RN A+ R+ GL QA A+L + L L+++E KI E+ EL + Sbjct: 515 DIVHMVRNSSSSAEAMRMLSEKRYGGLNAEQASAVLRMSLSQLSRIERDKIDLEEKELSE 574 Query: 443 ERDQLQGILASERKMNNLLKKELQ 466 + IL E + +L+ EL+ Sbjct: 575 SIKRYNHILGDESHIYSLIYSELE 598 >UniRef50_C7H694 DNA gyrase subunit A n=11 Tax=Bacteria RepID=C7H694_9FIRM Length = 749 Score = 321 bits (822), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 211/598 (35%), Positives = 324/598 (54%), Gaps = 20/598 (3%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 E Y+ Y+M VI+ RALP I DG KP R+++Y M +GL A+ KSA VG + Sbjct: 39 ETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYGMGLLKGAR-TKSANIVGSTM-HL 95 Query: 75 HPHGDSACYEAMVLMAQPF-SYRYPLVDGQGNWG-APDDPKSFAAMRYTESRLSKYSELL 132 +PHGD+A Y+ MV M + S P VD +GN+G A S AA RYTE++L E L Sbjct: 96 NPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAAARYTEAKLEGVCEEL 155 Query: 133 LSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAA 192 ++ + T D+VPN+DGT EP +LP P IL N T GIAVGMA +I NL E+ Sbjct: 156 FRDIDKETVDFVPNYDGTTTEPTLLPVTFPTILANNTLGIAVGMACNICSFNLAELCATT 215 Query: 193 IALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDG-- 250 +AL+ PK + + PD+ +I+ A++R++YENGRGS+++RA + G Sbjct: 216 VALMKDPKHDISTTM---PAPDFVGGGQILYDEAQMREVYENGRGSIKVRARYNVVPGEN 272 Query: 251 AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQ 310 + I+ +P + ++++IA ++ K+ + D+RDE+D + + R VD ++ Sbjct: 273 MLEITQIPPTTTVEAIMDKIAELVKAGKIKEISDMRDETDLNGLKLTLDLKRG--VDPEK 330 Query: 311 VMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVL 370 +M L+ TT LE S+ N N++ + G+P V + EIL EW FR + VRRR Y L Sbjct: 331 LMAKLYKTTPLEDSFSCNFNVL-VSGQPRVMGVREILQEWTAFRMECVRRRTYYDLHGKE 389 Query: 371 KRLHILEGLLVAFLNIDEVIEIIRN---EDEPKPALMSRFGLTETQAEAILELKLRHLAK 427 KRLH+L+GL L+ID+ I IIR E E P LM FG+ E QA+ + E+KLRHL + Sbjct: 390 KRLHLLKGLAAILLDIDKAIHIIRTTEEETEVVPNLMIGFGIDEVQADYVAEIKLRHLNR 449 Query: 428 LEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSP-LQEREEA 486 +K GE +LEK+ L ILA ++ ++ EL A+ Y RRS L + E Sbjct: 450 EYILKRTGEIEQLEKDIADLNDILAKPARIRRIIINELNDVAKKYAQPRRSEILYDLPEE 509 Query: 487 KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN-YKAGDSFKAAVKGKSNQPVVF 545 ++ +E +++P PVT+ ++ G+++ + G + K GD V+ ++N +F Sbjct: 510 ESGAEEEVIPDYPVTVFFTREGYLKKIPPQSLRTAGAHKLKEGDEIIHQVETRNNVEALF 569 Query: 546 VDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAG 601 + Y + L + G L G+L + G + M++ D ++ AG Sbjct: 570 FTDKQQVYKVRLNELEDGKVAQMGIYLPGRLGMDEGENILAMVITGDYSGYVLFFFAG 627 >UniRef50_Q98QI8 TOPOISOMERASE IV SUBUNIT A n=1 Tax=Mycoplasma pulmonis RepID=Q98QI8_MYCPU Length = 939 Score = 320 bits (821), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 217/693 (31%), Positives = 366/693 (52%), Gaps = 34/693 (4%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 +L + + + YS Y+I RALP DGLKPVQRRI+Y+M +L L FKKSAR VG Sbjct: 20 SLDQIMSDRFGRYSKYIIQQRALPDARDGLKPVQRRILYSMMDLKLWNDKPFKKSARIVG 79 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 DV+GKYHPHGDS+ YEAMV MAQ + PL+ GN G+ DD + AAMRYTESRL++ Sbjct: 80 DVIGKYHPHGDSSIYEAMVRMAQDWKMNIPLIQMHGNIGSIDDDPA-AAMRYTESRLAEI 138 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 S L+L + + + PNFD + +EP +LPA +PN+LLNG GIA G AT++PPHNL E+ Sbjct: 139 SNLMLEGIEKNVVSFAPNFDDSEKEPTVLPALIPNLLLNGARGIAAGFATEMPPHNLGEI 198 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK- 247 AAIA I ++ L+ ++GPD+PT +I + I + ++ GRG + + ++ Sbjct: 199 LDAAIAKIRISSLKVEDLIKYIKGPDFPT-GGVIHGLSGIVQAFKEGRGRISLTCKYEHI 257 Query: 248 ---EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 + ++I+ +P+ ++++ I + N+K+ + ++ D+SD + + + + Sbjct: 258 NLPDKNEILITQIPYGSVKSKIVRDIDEIIVNQKIDGIKEVLDQSDRDGIS--IAIKLEK 315 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 364 + + + +M +LF+ T+L+ Y N N+ +G P + NL E+L ++ + + L + Sbjct: 316 KANHESIMKYLFSKTELQVFYNYN-NIAIKNGSPTLLNLNELLDIYIEHLKTINVKILEF 374 Query: 365 RLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----LMSRFGLTETQAEAILEL 420 L K RL ++EG L D++I IR ++ K L+ F ++ QA AI EL Sbjct: 375 DLNKARLRLEVVEGFLRVAQITDQIIATIRASNDGKKGVIEDLIRIFAFSQRQATAIAEL 434 Query: 421 KLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPL 480 +L L++ + + E+ EL K+ + + IL S+ ++ L L+ + Y R++ + Sbjct: 435 RLYRLSQTDFYLYQNEKEELIKQINDFEKILNSDNELKTYLVNILKKIKKTYPTPRKTQI 494 Query: 481 QEREEAKAMSEHDMLPSEPVTIVLSQMGWV-----RSAKGHDIDAPGLNYKAGDSF--KA 533 + E + +++ E + LSQ G++ ++ K +D + GL SF KA Sbjct: 495 IDEELKRNYDIEELVVDEKCYVSLSQDGYLKRVSSKTFKTNDFASFGLKENDNLSFLSKA 554 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITL---PSARGQGEPLTGKLTLPPGATVDHMLME-- 588 K K + + S +YAI PI ++ G + + + ++L+ Sbjct: 555 TTKDK-----LLIFSDHGNYAIIPIYKIEEQKSKSFGVHINDFVYFNSYEKIIYVLVVNE 609 Query: 589 -SDDQKLLMASDAGYGFVCTFND-LVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI 646 S D + + + G G + N L+ R ITL ++ ++ V + +++L Sbjct: 610 FSQDYYISLVTQKGLGKRVSLNKFLITRQSKISNAITLKDDDRLVDVRVSKGKQNIIL-F 668 Query: 647 TQAGRMLMFPVSDLPQLS-KGKGNKIINIPSAE 678 T ++ F LP +S KG+GNK+I + E Sbjct: 669 TNFNNVVKFSEDALPVISTKGQGNKMIQLSEGE 701 >UniRef50_Q3QZ99 DNA gyrase C-terminal repeat, beta-propeller n=3 Tax=Gammaproteobacteria RepID=Q3QZ99_XYLFA Length = 352 Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 163/353 (46%), Positives = 234/353 (66%), Gaps = 4/353 (1%) Query: 389 VIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQ 448 +I IIRNEDEPKP L++RFGL++ Q E IL+ KLR LA+LEEM IR EQ L KERD++ Sbjct: 1 MIHIIRNEDEPKPVLIARFGLSDAQTEYILDTKLRQLARLEEMAIRSEQDALTKERDEIN 60 Query: 449 GILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMG 508 IL S+ ++ L+K EL ADA+ +GD RR+PL R+ A+A+ E +++ SEP+T+VLS+ G Sbjct: 61 VILDSDVQLKKLIKDELLADAKTFGDARRAPLVARQAAQAIDESELVASEPMTVVLSEKG 120 Query: 509 WVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568 W+R+AKGHD+D G++Y+ GD AAV+ +S V F+DS GR+Y+ TLPSARG GE Sbjct: 121 WIRAAKGHDVDPSGMSYREGDRLLAAVRTRSTHQVSFLDSEGRAYSTLVHTLPSARGNGE 180 Query: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENA 628 PLTG+ + PGA+ M +D+ ++AS GYGF+ F +L RN+AGKA+I L A Sbjct: 181 PLTGRFSPAPGASFQAMASADNDKLFVLASSHGYGFITRFENLTGRNKAGKAMIHLTPGA 240 Query: 629 HVMPPVVIEDAS-DMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLA 687 VM + D D ++A+T AG +L S+LP+L KGKGNK+I+IP + A + L Sbjct: 241 QVMGLAPLTDVQHDRIVAVTSAGNLLAIAASELPELDKGKGNKLIDIPKTKLA--TERLV 298 Query: 688 QLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLM-RGLQRIDRVEI 739 + + TL ++ G+R + L ++L+ RG RG L+ R +ID ++I Sbjct: 299 AVIAVASSHTLLLYSGERTMHLSFKDLEAYLDTRGSRGQLLPRSWHKIDTLDI 351 >UniRef50_B3PLT5 Topoiosmerase IV subunit A n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PLT5_MYCA5 Length = 949 Score = 318 bits (816), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 195/556 (35%), Positives = 311/556 (55%), Gaps = 22/556 (3%) Query: 21 YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDS 80 YS Y+I RA+P DGLKPVQRRI+Y+M L L + F+KSA+ VG+V+G+YHPHGDS Sbjct: 32 YSKYIIQQRAIPDARDGLKPVQRRILYSMYGLKLYNNQAFRKSAKIVGEVMGRYHPHGDS 91 Query: 81 ACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGT 140 + YEA+V M+Q + +PL++ GN G+ DD + AAMRYTESRL K SEL+L +L + Sbjct: 92 SIYEALVRMSQEWKSNFPLIEMHGNKGSIDDDPA-AAMRYTESRLEKISELILKDLDRKV 150 Query: 141 ADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPK 200 PNFD T EP +LP+ +PN+L+NG+ GIA G AT+IPPHNL EV A I LI P Sbjct: 151 VAMAPNFDDTEYEPVVLPSLIPNLLINGSKGIAAGFATEIPPHNLSEVIDATIKLIKNPL 210 Query: 201 TTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSV----RMRAVWKKEDGAVVIS- 255 +L++L IVQGPD+PT +I I + +E G+G + R R V+ + + +I Sbjct: 211 ISLEELKQIVQGPDFPT-GGVIHGIEGIAQAFETGQGKINISSRYRFVYAENKPSKIIGI 269 Query: 256 ---ALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVM 312 P V ++++ I + +K + V ++RD+S+ E + + + + + + ++ Sbjct: 270 EIYETPFGVIKSKLVADIDFLVIDKTINGVKEVRDQSNREGIS--IYLELEDEANAEAII 327 Query: 313 NHLFATTDLEKSYRINLNMIGL-DGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLK 371 N+L + TDL SY N NM+ + + P + NL +L +L +D + + + L+K Sbjct: 328 NYLMSKTDLRISY--NYNMVAIHENSPKLMNLQMLLFTYLSHLKDINTKGIEFDLKKYEI 385 Query: 372 RLHILEGLLVAFLNIDEVIEIIRNEDEPKP----ALMSRFGLTETQAEAILELKLRHLAK 427 RL I++G + DEVI +I+N D K AL FG T QA AI EL+L L+K Sbjct: 386 RLEIVQGFIKVSEISDEVIRVIKNSDNSKKGVIEALEKTFGFTNIQATAIAELRLYKLSK 445 Query: 428 LEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAK 487 +++++ + E EL + + + +L + + + + ++L+ + Y R S + + + Sbjct: 446 MDQLEFQNEAKELAIKIARCKELLENPNEFDKFIIEQLKDIKKEYAKPRFSEISQDKIRT 505 Query: 488 AMSEHDMLPSEPVTIVLSQMGWVR--SAKGHDIDA-PGLNYKAGDSFKAAVKGKSNQPVV 544 ++ + +E LS+ G+++ S K + G K D+ K S ++ Sbjct: 506 EINTKLLAKNEDFYFFLSKEGYIKRISKKAFSSNGFSGFKLKDNDAIFYYDKINSLSKLI 565 Query: 545 FVDSTGRSYAIDPITL 560 F + G + ID TL Sbjct: 566 FFTNLGNYFIIDAHTL 581 >UniRef50_Q4A6Z3 Topoisomerase IV subunit A n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A6Z3_MYCS5 Length = 860 Score = 318 bits (816), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 173/515 (33%), Positives = 302/515 (58%), Gaps = 18/515 (3%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 ++ + E + YS YVI +RA+P + DGLKPV RRI+Y+M LGL+ KFKKSAR VG Sbjct: 14 SVDKIMEERFETYSKYVISNRAIPDVRDGLKPVHRRILYSMYALGLDFDKKFKKSARIVG 73 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 DV+GKYHPHGD++ Y AM+ +AQ + PL+ GN G+ DD K AAMRYTE +L+K Sbjct: 74 DVIGKYHPHGDTSVYNAMINLAQWWKMNIPLLSMHGNIGSIDDDKQ-AAMRYTEVKLAKI 132 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 + ++ ++ + T ++PNFD + EP +LP+ PN+L+NG+ GIA+GMAT++PPHNL E+ Sbjct: 133 ANYIIGDIKKKTVKFIPNFDDSETEPIVLPSMFPNLLVNGSRGIAIGMATEMPPHNLGEI 192 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGS-------VRM 241 A + I PK + +L + V GPD+PT +I I + ENGR + Sbjct: 193 IDACVYKIKHPKASYSELSNFVLGPDFPT-GGVIKGTKGIAEALENGRNEKNKIKLFCKY 251 Query: 242 RAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 K ++ + I+ +P+ V +++ +I ++NK + + +++D SD + L+ + Sbjct: 252 EIYTKGKNKFIEITEIPYGVVKVKLVYEIDLIIQNKLIDGIIEIKDRSDRDGINILITLD 311 Query: 302 -RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360 SN + ++N+LF+ T ++ +Y N N++ + P + NL ++S ++ ++ Sbjct: 312 INSNE---ESILNYLFSKTQMQITYSYN-NIVIDNNSPTLMNLENLISSYIAHIKNVKTL 367 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----LMSRFGLTETQAEA 416 LNY L K RL I+ G + +VIE+IR K L+ F T+ QAE+ Sbjct: 368 SLNYDLNKAKVRLEIINGFIKVSEITSQVIELIRKTQGSKMGVVNNLIQVFNFTKLQAES 427 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDR 476 I EL+L L++ ++ E+ E+++ + ++ +L +E++ NN L E++A + + R Sbjct: 428 IAELRLYKLSQTDKEIYLKEKVEVKETINIIENLLNNEKEFNNFLINEIKAIKKEFSVPR 487 Query: 477 RSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVR 511 ++ ++E++ + ++ D++ E + + +S+ G+++ Sbjct: 488 KTQIEEKDFEVSYNKLDLVKEEIINVSISKNGFIK 522 >UniRef50_A7VBP9 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A7VBP9_9CLOT Length = 759 Score = 313 bits (802), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 225/717 (31%), Positives = 369/717 (51%), Gaps = 77/717 (10%) Query: 17 AYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK-FKKSARTVGDVLGKYH 75 +Y++YSM VI +RALP + DGLKPVQRRI+Y+++ GL S K +K AR VGD +GKYH Sbjct: 17 SYVDYSMSVITERALPDVRDGLKPVQRRILYSLN--GLAGSDKPHRKCARIVGDTMGKYH 74 Query: 76 PHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSE-LLLS 134 PHGDS+ YE +V MAQ + PLVD GN+G+ D + AAMRYTE+R+SKY+E + + Sbjct: 75 PHGDSSIYEGLVNMAQNWKLPIPLVDPHGNFGSVDGSGA-AAMRYTEARISKYTEDVCMK 133 Query: 135 ELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIA 194 +L ++PNFDGT EP LP ++PNIL++G+TGIAVGMAT+IP HNL EV A + Sbjct: 134 DLSFFKDQFIPNFDGTETEPTFLPFQVPNILVSGSTGIAVGMATNIPTHNLGEVIDATVM 193 Query: 195 LIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED----- 249 ++ P+ L+ LLD+++GPD+ T I S+ ++ ++YE G G +++R + D Sbjct: 194 YLNDPEVPLENLLDVMKGPDFATGGIINASKEDLMQVYETGLGRIKVRGKVEIRDIGHGR 253 Query: 250 GAVVISALPHQVSG--ARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR-SNRV 306 ++ ++ +P + G A+ L+ +A RN++LP V D+ D D + V + + Sbjct: 254 KSICVTEIPFTMIGGTAKFLDTVAELTRNRELPAVVDIADRGDKNGECLCIDVKKGTTDE 313 Query: 307 DMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRL 366 ++ ++N L+ LE ++ +N+N I DG+P V L ILS + F+ + L Sbjct: 314 EIRNIINILYKKAGLEDTFGVNINCI-YDGKPEVMGLRRILSIYTDFKYGLYNTKYTKLL 372 Query: 367 EKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMS--------RF-------- 407 E ++ I GLL A ID +IEI+R + K LM RF Sbjct: 373 ENQMEVREIKTGLLTAVDCIDLIIEILRGSKKVADAKACLMHGDTSNITFRFKGSEADAK 432 Query: 408 --GLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKEL 465 TE QA+AIL ++L+ L LE ++ E + EK + +L S+ M + ++ Sbjct: 433 FLCFTEKQADAILAMRLQKLIGLEVNALKKELEDAEKLIKKYSKLLESKSNMKKQMIADM 492 Query: 466 QADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNY 525 + Y R++ + + E + + + +E V ++L + +++ + D Sbjct: 493 LEIKEKYAIPRKTVIADCGEV-VVKKAQAVETE-VAVLLDRFYYIKVVDANLYDKN--KA 548 Query: 526 KAGDSFKAAVKGKSNQPV-VFVDSTGRSYAI---DPITLPS-----ARGQGEPLTGKLTL 576 + ++ + K K+ + V VF D+ + Y I D I L + +G G L G+L+ Sbjct: 549 QIDKDYRFSFKCKNTERVGVFADNN-QMYMIKVADIIKLQAKKNTGKKGNGSGLIGRLSD 607 Query: 577 PPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARN-----RAGKALITLPENAHVM 631 + M ++ L M C ++ +N + G+A + N V+ Sbjct: 608 KGIQIFEFCNMNGNENILYM---------CCLEQIIDKNLLFVTKHGQAKLVPGNNYDVL 658 Query: 632 PPVV-----------IEDA--SDMLLAITQAGRMLMFPVSDLPQLSKGKGN-KIINI 674 ++ I DA D ++ + G +S++P KG G +++NI Sbjct: 659 RKMIAASKQEEDIIFIHDAEMEDFIVVKSMLGYYARIQISEIPVKGKGAGCIRLVNI 715 >UniRef50_Q6KHI4 Topoisomerase IV subunit A n=1 Tax=Mycoplasma mobile RepID=Q6KHI4_MYCMO Length = 858 Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 188/508 (37%), Positives = 296/508 (58%), Gaps = 11/508 (2%) Query: 16 NAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYH 75 N Y Y+ Y+I RALP + DGLKPVQRRI+Y+M ELGL + FKKSAR VGDV+GKYH Sbjct: 21 NRYGVYAKYIIQQRALPDVRDGLKPVQRRILYSMHELGLTSEKPFKKSARVVGDVIGKYH 80 Query: 76 PHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSE 135 PHGDS+ YEAMV M+Q + PL+ GN G+ DD + AAMRYTE+RLSK S LLLS+ Sbjct: 81 PHGDSSIYEAMVRMSQEWKMNVPLIQMHGNIGSIDDDPA-AAMRYTEARLSKISSLLLSD 139 Query: 136 LGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIAL 195 + T + NFD + +EP +LPA PN+L+NG GIA G AT+IPPHNL EV IA Sbjct: 140 IKSDTVSFSLNFDDSEKEPTVLPAFFPNLLVNGARGIAAGFATEIPPHNLGEVIDGIIAK 199 Query: 196 IDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGAVVIS 255 I P ++ L I++GPD+PT I + +GRG + + + ++ +VI+ Sbjct: 200 IKNPNIKIETLNTIIKGPDFPTGGIIYGIDGIKEAAF-SGRGRITITSKYEVHKNQIVIT 258 Query: 256 ALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHL 315 +P+ V ++++ QI +K + ++++RDE++ + +++ D ++M L Sbjct: 259 EIPYGVVKSKLVRQIDEINLDKNIGGMNEVRDETNRDGIK--IVIDLEAGADASKIMKFL 316 Query: 316 FATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHI 375 T+L+ Y N N+ + P + NL +++ +L + ++N+ LEK+ KRL I Sbjct: 317 MQKTELQLYYSYN-NIAIHNNAPVLMNLHDLIQAFLDHVKVIQTNKINFELEKLSKRLEI 375 Query: 376 LEGLLVAFLNIDEVIEIIRNEDEPKPA----LMSRFGLTETQAEAILELKLRHLAKLEEM 431 +EG + D+VIE+IR + K L+ F +E QAE+I L+L L+K + Sbjct: 376 IEGFIKLTEISDQVIEMIRKSEGSKVGVVENLIKIFNFSEIQAESIANLRLYRLSKTDVE 435 Query: 432 KIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSE 491 + E+ ELE + L+ +L+SE + N L K + + Y R++ ++++ +S Sbjct: 436 EFIKEKQELETRINFLKTLLSSESEFNAELIKIFKDIKKTYATPRKTEIKDQALKLDVSL 495 Query: 492 HDMLPSEPVTIVLSQMGWVR--SAKGHD 517 D++ +E + +S+ G+++ + K HD Sbjct: 496 SDLIQAEETFVGISRDGYIKRFNQKIHD 523 >UniRef50_A5IXX2 Topoisomerase IV subunit A n=2 Tax=Mycoplasma RepID=A5IXX2_MYCAP Length = 861 Score = 301 bits (770), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 176/499 (35%), Positives = 287/499 (57%), Gaps = 13/499 (2%) Query: 21 YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDS 80 YS YVI RALP + DGLKPVQRRI+Y+M +LGL + FKKSAR VGDV+GKYHPHGD+ Sbjct: 32 YSKYVIQQRALPDVRDGLKPVQRRILYSMYDLGLQNNKPFKKSARVVGDVIGKYHPHGDT 91 Query: 81 ACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGT 140 + Y+AMV M Q + + LV+ GN G+ DD + AAMRYTE RLS+ + ++ ++ + T Sbjct: 92 SIYDAMVRMGQEWKMGHTLVEMHGNVGSIDDDPA-AAMRYTEVRLSEIANYVIGDIRKNT 150 Query: 141 ADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPK 200 + PNFD + +EP ++P +PN+L+NG+TGIA G AT++PPHNL E+ AAIA + P Sbjct: 151 VKFAPNFDDSEKEPVVMPVLIPNLLINGSTGIASGFATEMPPHNLNEILDAAIAKVKNPA 210 Query: 201 TTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSV----RMRAVWKKEDGAVVISA 256 L +L I+QGPD+PT II I + +E G+G + R + + I+ Sbjct: 211 IELTKLAKIIQGPDFPT-GGIIYGTEGIHEAFERGKGRITLASRYNVYTDSKYKYIEITE 269 Query: 257 LPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLF 316 +P+ V ++++ +I + ++++ + +++D++D L+ + + D + ++N+LF Sbjct: 270 IPYGVVKSKLVHEIDLIVDSEEVAGLLEVKDQTDRNGINILITLDK--EADENVIVNYLF 327 Query: 317 ATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHIL 376 T + Y N N++ + P + +L +L +D + + + L K RL I+ Sbjct: 328 LKTQMRIYYNYN-NVVIDNYTPKTLGISALLDAYLKHVKDIKIKTIEFDLIKHKARLEIV 386 Query: 377 EGLLVAFLNIDEVIEIIRNEDEPKPA----LMSRFGLTETQAEAILELKLRHLAKLEEMK 432 G L D+VIE+IR + K LMS F T QA AI EL+L L+K +E Sbjct: 387 IGFLKVAKITDKVIEVIRKSENSKQGVIDNLMSAFDFTLNQATAIAELRLYKLSKTDEHA 446 Query: 433 IRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEH 492 E+ ELE++ Q + +L + N L + +G RR+ ++ + ++++ Sbjct: 447 FLIEKEELEEKIKQCELLLNDSDEFNKYLIALFKDLKSKFGRARRTSIENEQIKASINQE 506 Query: 493 DMLPSEPVTIVLSQMGWVR 511 D++ E V + +S+ G+++ Sbjct: 507 DLVKEEQVFLGISKFGYIK 525 >UniRef50_A6TSS8 DNA topoisomerase (ATP-hydrolyzing) n=7 Tax=Clostridiaceae RepID=A6TSS8_ALKMQ Length = 930 Score = 299 bits (765), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 193/601 (32%), Positives = 324/601 (53%), Gaps = 22/601 (3%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 E+ Y+ Y+M VI+ RALP I DG KP R+++Y MS++GL + KSA VG + K Sbjct: 18 ESNYMPYAMSVIVSRALPEI-DGFKPSHRKLLYTMSQMGLLTKGR-SKSANIVGTTM-KL 74 Query: 75 HPHGDSACYEAMVLMAQPFS-YRYPLVDGQGNWGA--PDDPKSFAAMRYTESRLSKYSEL 131 +PHGD A YE MV M + + VD +GN+G D + A+ RYTE++L K+++ Sbjct: 75 NPHGDQAIYETMVKMTRGHQGLLHAYVDSKGNFGKVYSRDMRE-ASARYTEAKLEKFTQE 133 Query: 132 LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQA 191 + S + + D+V N+D T +EP +LP PNIL+ GIAVGMA IP NL+EV +A Sbjct: 134 IFSNIDKNVVDFVDNYDSTTKEPTLLPTTFPNILVKYNKGIAVGMAEHIPSFNLKEVCEA 193 Query: 192 AIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK--KED 249 IA + + LL+ ++ PD+ T E+I + ++++Y GRG+ ++R ++ K D Sbjct: 194 TIAYLKDKEI---DLLEYLKAPDFSTGGELIFNEVTMKQVYHTGRGTFKVRGKYRYVKAD 250 Query: 250 GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMD 309 A+ I +P+ S ++E I ++ K+ + D+RDE+D + + R V+ D Sbjct: 251 NAIEIYEIPYTTSIEAIIESIIELVKKGKIKEITDIRDETDKNGLKITIDLKRG--VNPD 308 Query: 310 QVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKV 369 +M F T LE S+ N N++ ++G P V + EIL W+ FR ++R++ + ++K+ Sbjct: 309 DLMVKFFKWTKLEDSFGCNFNIL-INGHPKVMGVKEILDHWIAFRLSCLKRQVQFEIDKL 367 Query: 370 LKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEAILELKLRHLA 426 ++L++L+GL LNI EV+++I+N + K LM +F L QAE I E+KLR L Sbjct: 368 EEKLNLLKGLEKIQLNIHEVVDVIQNTKKDKDVIANLMEQFDLNLAQAEYIAEIKLRSLN 427 Query: 427 KLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEA 486 + +K E S +EKE +L +LA E K N ++ +L+ ++AYG R++ + E Sbjct: 428 QELILKKIKEISAIEKELKRLGMVLARESKQNEIIVNDLKRISEAYGIPRKTDIINENEV 487 Query: 487 KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG-LNYKAGDSFKAAVKGKSNQPVVF 545 + +SE ++ + + + L+ G+++ + + G K D + G + V+ Sbjct: 488 EVLSEEILIENYNMKLFLTNEGYIKKISLASLRSSGDHKLKDNDYIVQEIDGTNRGEVLL 547 Query: 546 VDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLMESDDQ-KLLMASDAGY 602 + Y I L ++ G+ L L L + H++ D Q +L + G Sbjct: 548 FSNKETVYKIKAYELEDSKASNLGQYLNNVLGLSSDEIILHIVCTEDYQGHMLFFFENGK 607 Query: 603 G 603 G Sbjct: 608 G 608 >UniRef50_P75352 DNA topoisomerase 4 subunit A n=2 Tax=Mycoplasma RepID=PARC_MYCPN Length = 789 Score = 298 bits (762), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 169/507 (33%), Positives = 283/507 (55%), Gaps = 12/507 (2%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 A+ + ++ Y+ Y+I DRALP + DGLKPVQRRI+Y M ++GL ++ +KKSAR VG Sbjct: 12 AIEDVFAFSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMYQMGLKPTSPYKKSARAVG 71 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 +++GKYHPHGD++ Y+A+V M+Q + + GN G+ D + AAMRYTE+RLS Y Sbjct: 72 EIMGKYHPHGDASIYDAIVRMSQAWKNNLTTISIHGNNGSIDGDNA-AAMRYTEARLSPY 130 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 LL ++ + +V NFD + EP +LP LPN+ +NGT+GIA G AT+I PHN+ E+ Sbjct: 131 GFELLKDIEKQLVPFVNNFDDSEVEPSVLPTLLPNLFINGTSGIAAGYATNIAPHNVGEL 190 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248 I+ P L +L IV+GPD+PT ++ E+ IY+ G+G ++A ++ Sbjct: 191 LDGLSYRIENPDCDLKAILKIVKGPDFPT-GGLVYFEQELANIYQTGKGKFVIQAKYETN 249 Query: 249 ----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 +VI+ +P++ A +++QI + + KL ++ + D SD +I+ + Sbjct: 250 TAFGQNQIVITEIPYETVKANIVKQIEELISDNKLSALESVIDSSDRSGIR--IIINHKD 307 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 364 + D++M LF T L+ ++ +N N + + P LL ++L F + + Y Sbjct: 308 FLSADKIMAFLFKHTQLQVNFNLN-NTVIANRCPVRVGLLAYFDQFLAFAHELIINSAKY 366 Query: 365 RLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEAILELK 421 L KRL I++GL+ A IDE+I +IR ++ + K L+ ++ T QAEAI+ L+ Sbjct: 367 DLALANKRLEIIKGLIKAVSMIDEIIRLIRRATDKQDAKTKLIDKYAFTLNQAEAIVSLR 426 Query: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQ 481 L L + + EQ ELE+ + ++A + N LL+ + + + RR+ + Sbjct: 427 LYQLTNTDIKVLFAEQKELEQTIQTAERLIAKPQARNQLLQAQFFQYKKQFNQPRRAQIV 486 Query: 482 EREEAKAMSEHDMLPSEPVTIVLSQMG 508 E + + + D + + V +++S G Sbjct: 487 GLIEKQKVQDSDFIEHKEVGLLISHDG 513 >UniRef50_Q4A8X9 Topoisomerase IV subunit A n=3 Tax=Mycoplasma hyopneumoniae RepID=Q4A8X9_MYCH7 Length = 846 Score = 295 bits (754), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 203/663 (30%), Positives = 348/663 (52%), Gaps = 27/663 (4%) Query: 18 YLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPH 77 ++ YS YVI RA+P + DGLKPVQRRI+Y+M +LGL S +KKSAR VGDV+GKYHPH Sbjct: 21 FIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWQLGLKNSKNYKKSARVVGDVIGKYHPH 80 Query: 78 GDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELG 137 GD + Y+A+V +AQ + PLV+ GN G+ DD AAMRYTE RL++ SE LL + Sbjct: 81 GDFSIYDALVRLAQEWKMNSPLVEMHGNKGSIDDDPP-AAMRYTEVRLAEISEHLLELIS 139 Query: 138 QGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALID 197 + + PNFD + +EP +LPA PN+L+NG GIA G AT+IPPHNL EV A I +I Sbjct: 140 KNVVSFCPNFDDSEKEPTILPAIFPNLLINGAIGIASGFATEIPPHNLGEVIDATILMIK 199 Query: 198 QPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK--KEDGAVV-- 253 P T++++ I+ GPD+PT I+ ++ I ++ G+G +++ + +K +++G V Sbjct: 200 NPGITIEEISTIILGPDFPT-GGIVYGKSGIFDAFKTGKGKIKISSDYKIFEKNGQNVIE 258 Query: 254 ISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMN 313 I+++P +S + ++E+I + K+ + ++ D+SD + L+ + + D+ ++N Sbjct: 259 ITSIPFGISKSSLIEEIDDIRFDAKIYGIKNVIDQSDQNGVSILIELEQDGNPDL--IIN 316 Query: 314 HLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRL 373 +L T L+ Y N I D P + ++ E++ +L R N+ L K KRL Sbjct: 317 YLLQKTHLQIHYSYNSVAI-CDNSPKLLSIKEMIFYYLEHLRKIKLAEFNFELYKNKKRL 375 Query: 374 HILEGLLVAFLNIDEVIEIIRNEDEPKPALMSR----FGLTETQAEAILELKLRHLAKLE 429 I+ G L DEVI++IR D K ++S F ++TQAEAI ++L L+K+E Sbjct: 376 EIITGFLKVADITDEVIKVIRASDNSKVGVVSDLIKFFNFSQTQAEAIASMRLYRLSKIE 435 Query: 430 EMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAM 489 + E LEK + + ++ ++ + + L L + +G R++ + + + + Sbjct: 436 QQIYLEESKNLEKNIARFKKLIENKDEFDKNLINMLTDFKKHHGKPRKTKIIDSDIKIKI 495 Query: 490 SEHDMLPSEPVTIVLSQMGW-----VRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVV 544 ++ +++ E +++ G ++++ +I+ L GD F Q V Sbjct: 496 NKDELVKDEFFYFWITKSGLYKKLDIKNSLPDEIEKTQL--PNGDFFIFQGIINQKQKAV 553 Query: 545 FVDSTGRSYAIDPITLPSARGQGEPLTGKLTL--PPGATVDHMLME---SDDQKLLMASD 599 F+ + G + +P + P K+TL P + + Q L+ S Sbjct: 554 FLTNKGEIAILAVHQIPELNLKNSPNNLKITLGIPNNQQILSVFFADSFESSQFLIFISK 613 Query: 600 AGYGFVCTFNDLVA-RNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVS 658 + + L+ + + + + E ++ V +E+ ++ IT R L +S Sbjct: 614 FSFAKRMNLDQLMKIKQKKLQNIFRFKEGDELI-SVFLEEKLKNIVLITTQNRALKMSIS 672 Query: 659 DLP 661 ++P Sbjct: 673 EIP 675 >UniRef50_Q4N468 DNA gyrase subunit A, putative n=2 Tax=Theileria RepID=Q4N468_THEPA Length = 1014 Score = 282 bits (722), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 177/524 (33%), Positives = 296/524 (56%), Gaps = 56/524 (10%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 E L L+++ +++L Y++ +I+ RALP DGLK V RRI++AM L L+ + +++K A+ Sbjct: 100 EYLKLNDYMCSSFLKYALSIILGRALPDSRDGLKVVHRRIIWAMHMLKLDPNGQYRKCAK 159 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 VGDVLG YHPH D + Y+A+ ++Q F + PL+DG GN+G+ +DP AAMRYTE RL Sbjct: 160 VVGDVLGNYHPHSDKSVYDALCRLSQDFIMKVPLIDGHGNFGSNNDPP--AAMRYTECRL 217 Query: 126 SKYSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 + +S++ +L+++ T D++PNFD T EP +LP RLPNIL+NG++GIAVG+AT+IPPHN Sbjct: 218 TNFSKMIMLNDINFNTIDYIPNFDNTNIEPMVLPCRLPNILINGSSGIAVGLATNIPPHN 277 Query: 185 LREVAQAAIALID-------------QPKTTLD--------QLLDIVQGPDYPTEAEIIT 223 EV A I I + TT+D ++++ V GPD+PT I T Sbjct: 278 PTEVINATIQFIKSHLNTTTETTAETRSDTTVDGLKDDKNVEIVNEVMGPDFPTGGVIRT 337 Query: 224 SRAEIRKIYENGRGSVRMRAVWKKEDG----------------------AVVISALPHQV 261 +R +RKIYE+G+G+V +++ + E+ ++VI+ +P+ Sbjct: 338 TREAMRKIYESGKGTVLIQSKFVFEEKFRDVINVYNNFKDIKFKHNSRISIVINQIPYNT 397 Query: 262 SGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN---RVDMDQVMNHLFAT 318 ++E I ++N + V+D++DESD N TR+V+ + N +++ ++M L Sbjct: 398 RINDIIENINRNIKNNNIIGVNDVKDESD-RNGTRIVVELKRNISSVIEIQEIMAKLQRL 456 Query: 319 TDLEKSYRINLNMIGLD-GRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILE 377 T+ Y N I LD +P NL IL WL FR ++R+ + L K+ K L I+ Sbjct: 457 TE----YNYKCNFITLDQDKPIRFNLYTILKIWLDFRLKVLKRKYKHLLLKLKKNLDIIN 512 Query: 378 GLLVAFLNIDEVIEIIRNEDE-PKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGE 436 ++ +LNI+ +I +N + L F L + Q ++++ L LR L +L ++ + Sbjct: 513 AYIIIYLNINTIINSFQNHQKGVYKVLKEEFKLNDDQMKSVMRLTLRQLNQLNIDNLKEK 572 Query: 437 QSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPL 480 E K+ + + +L ++ + N + +L + + +R+ L Sbjct: 573 SGEYTKQIEFYENVLNNDTNLYNEIISDLTELKDHFKNIKRNTL 616 >UniRef50_UPI0001976864 DNA gyrase/topoisomerase IV, subunit A n=1 Tax=Bacillus subtilis subsp. subtilis str. NCIB 3610 RepID=UPI0001976864 Length = 664 Score = 278 bits (712), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 163/510 (31%), Positives = 287/510 (56%), Gaps = 19/510 (3%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 + + EN + YS Y+++DRALP + DGLKPV RRI+Y+M L + KF KSA G Sbjct: 8 IEQIIENNMMEYSAYILLDRALPDLRDGLKPVHRRILYSMY---LQKAFKFTKSANVAGQ 64 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSF-AAMRYTESRLSKY 128 V+ K HPHG S Y +MV M Q + P+++G+GN+G AA RY+E +LS+ Sbjct: 65 VM-KLHPHGSS--YGSMVGMVQKDRHIIPMLEGKGNFGQYTSRDLMPAADRYSEVKLSEI 121 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 S ++ + D++ N+DGT++ P++LP + P+IL +GI VG ++ IP NL+E+ Sbjct: 122 SIDMMQNFDKNVVDFIDNYDGTMKMPEVLPVKFPSILAYSNSGIGVGFSSSIPSFNLKEL 181 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248 +A + I+ + T V PD+ T I+ R++ E GRG+V++R + Sbjct: 182 TEAIVKYIETGEKT-------VLVPDFATGGLIVKEDNVFRQLNEEGRGTVKIRGKAEIV 234 Query: 249 DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308 + I+ +P+ + ++E+I + KL V D++D + + L+ + DM Sbjct: 235 KNEIHITEIPYSTTREAIIEKIVELNKAGKLKEVTDVKDLTGLKG--MLITITARRNTDM 292 Query: 309 DQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEK 368 + ++ L+ T L+ ++ N+NM+ +D P V + + + +WL +R ++R L++ +E Sbjct: 293 NVLLEKLYKFTPLQSTFSANMNML-VDDLPKVLGVWQTIDKWLEWRTTCIKRGLSHDIET 351 Query: 369 VLKRLHILEGLLVAFLNIDEVIEIIR--NEDEPKPALMSRFGLTETQAEAILELKLRHLA 426 + ++LH+L+GL L+IDE IEIIR ++D+ +P L FG+ QA+ + +KLR++ Sbjct: 352 MTRKLHLLQGLEKVLLDIDEAIEIIRRSSQDQIEPNLQKHFGIDFEQAKEVANMKLRNIN 411 Query: 427 KLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEA 486 + +K + + EK + + I+ S+ K+N ++ K L + YG +RR+ + E E Sbjct: 412 REYIIKKIEDIDKFEKTIENYKMIVKSQDKINQIIIKGLNETKEKYGKERRTKIVELTEV 471 Query: 487 KAMSEHDMLPSEPVTIVLSQMGWVRSAKGH 516 K + + +P+ VTI L++ G+ KG+ Sbjct: 472 KPVRLVEEVPNYAVTIYLTKEGYCYKFKGN 501 >UniRef50_B1BBK7 DNA topoisomerase n=5 Tax=root RepID=B1BBK7_CLOBO Length = 1417 Score = 255 bits (652), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 159/504 (31%), Positives = 276/504 (54%), Gaps = 20/504 (3%) Query: 18 YLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPH 77 YL Y++ VI +RA+ I DG KP R++++ + E L K KSA VG + + H Sbjct: 680 YLPYAIEVIKERAIISI-DGFKPAHRKLLWTLHESNL--YNKRTKSAHIVGSNMS-LNVH 735 Query: 78 GDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSF--AAMRYTESRLSKYSELLLSE 135 GD + YE +V MAQ + YP V+G+GN+G KS A MRYTE+ S ++ Sbjct: 736 GDGSIYETLVRMAQKDTLLYPYVNGKGNFGQHT-SKSLQNAHMRYTEAGASNINKEFFHG 794 Query: 136 LGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIAL 195 + + D+VPNFDG +EP +LP PN+L+N GIAVGMA+ P NL+EV IA Sbjct: 795 INKNAVDFVPNFDGEKEEPILLPTTFPNVLVNANKGIAVGMASATPSFNLKEVCDLTIAY 854 Query: 196 IDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGAVVIS 255 I K T + D + PD+ T I+ ++ +IYE G+GSV +RA ++ +D ++++ Sbjct: 855 I---KDTNIVVSDYLLCPDFATGGFIVRDVDKLNQIYETGQGSVTLRAKYEVKDNEIIVT 911 Query: 256 ALPHQVSGARVLEQIAAQMRNKKLPMVDDLR---DESDHENPTRLVIVPRSNRVDMDQVM 312 +P+ + +++ I R K ++ ++ D +D + + + + ++ +++ +M Sbjct: 912 EIPYTTNRESIVKDIKTLCRESKDNIIRNITNVIDSTDRKGMSITIKIKKNTNIEL--LM 969 Query: 313 NHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKR 372 L+A T L+ SY +N+N++ LD P V ++ IL EWL FRR + R NY + + Sbjct: 970 EKLYANTKLQDSYSLNMNIVCLDKIPRVLSIKRILDEWLKFRRMCISRVSNYDKKDKEHK 1029 Query: 373 LHILEGLLVAFLNIDEVIEIIRN---EDEPKPALMSRFGLTETQAEAILELKLRHLAKLE 429 LH+L + +ID ++ I RN +D+ L F + + QAE + +KL+ L K Sbjct: 1030 LHLLNAFKIILTDIDALVHITRNAIDDDDMIKQLQLYFKIDQEQAEYVSNIKLKKLNKNN 1089 Query: 430 EMKIRGEQ-SELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKA 488 ++I +Q + L++E L+ I E ++NN++ ++LQ Y R++ + E+ + Sbjct: 1090 IIEITEQQITALQQEISDLKNIQNDETRINNIIIQQLQNIRDKYKIPRKTEIINVEDIPS 1149 Query: 489 MSEHDM-LPSEPVTIVLSQMGWVR 511 ++ D+ + T+VL++ +++ Sbjct: 1150 VTLEDIKIEDFNPTLVLTEQQYIK 1173 >UniRef50_A4T3N2 DNA gyrase/topoisomerase IV, subunit A n=6 Tax=Mycobacterium RepID=A4T3N2_MYCGI Length = 716 Score = 255 bits (652), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 163/477 (34%), Positives = 252/477 (52%), Gaps = 14/477 (2%) Query: 12 EFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVL 71 E+ + L +++Y + DRA+P DGLKP QRR++Y M E L K +KS++ V Sbjct: 19 EYWNHYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHESRLLPGNKPQKSSKICSAVT 78 Query: 72 GKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWG--APDDPKSFAAMRYTESRLSKYS 129 G HPHG ++ Y A LMA F R ++DGQG + D P AA RYTE RLS Sbjct: 79 GNLHPHGGASMYGAAALMAADFQ-RVKVIDGQGAFPRIQGDIP---AADRYTEMRLSAPG 134 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 L +EL V FDG EP +LPA+ P +L NG GIA G AT +P HN REV Sbjct: 135 AALTAELDSHAVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAEGWATKVPAHNPREVM 194 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED 249 A AL+ P T D+L+ ++ GPD+ A +I + +R+ GRG +R + Sbjct: 195 AACRALLKTPNMTDDRLVKLIPGPDWGCGASVIGTDG-LREYITTGRGLFTVRGTVSVDG 253 Query: 250 GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMD 309 +I+ LP V+ V ++I A + + ++ V D+ D +D N R+V+ + + Sbjct: 254 KNCIITELPPGVASGTVQDRIRALVESGEMAGVADMSDLTDRRNGLRIVVTAKRGH-SAE 312 Query: 310 QVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKV 369 Q+ + L A T LE S+ +L + + P ++ E+++ +L R V R YRLEKV Sbjct: 313 QIRDQLLALTPLESSFAASLVALDENRVPRWWSVRELIAAFLSLRDSVVLHRSEYRLEKV 372 Query: 370 LKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQAEAILELKLRHLA 426 R H++ GL+ L+ID + IIR D+ + L RF + QA+ +L L+LR L Sbjct: 373 TARRHLVAGLMTIHLDIDTAVAIIRASDTVDDARLGLQERFAIDAVQADYVLALQLRRLT 432 Query: 427 KLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD---DRRSPL 480 KL+ ++++ E +L+ E L ++++ ++ +EL A+ + DRR+ L Sbjct: 433 KLDVIELQAEAEKLDAEFAALTELVSNPDARRKVIDQELVETAKLFKGPEYDRRTVL 489 >UniRef50_Q57532 Mle gyrA intein n=207 Tax=cellular organisms RepID=GYRA_MYCLE Length = 1273 Score = 253 bits (645), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 174/566 (30%), Positives = 296/566 (52%), Gaps = 35/566 (6%) Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RL+ + +L E+ + T D++ N+DG +QEP +LP+R PN+L NG+ GIAVGMAT+I Sbjct: 551 TEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATNI 610 Query: 181 PPHNLREVAQAAIALIDQ----PKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR 236 PPHNL E+A A ++ +T L +++ V+GPD+PT I+ S+ I Y+ GR Sbjct: 611 PPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGSQG-IADAYKTGR 669 Query: 237 GSVRMRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDH 291 GS+R+R V + E+ ++VI+ LP+QV+ + IA Q+R +L + ++ D+ Sbjct: 670 GSIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSD 729 Query: 292 ENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWL 351 R+VI + + V V+N+L+ T L+ S+ N+ I +DG P L +++ ++ Sbjct: 730 RVGVRIVIEIKRDAV-AKVVLNNLYKHTQLQTSFGANMLSI-VDGVPRTLRLDQMICYYV 787 Query: 352 VFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFG 408 + D + RR YRL K +R HIL GL+ A +DEVI +IR D + ++ Sbjct: 788 EHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIARVGVVELLD 847 Query: 409 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 + + QA+AIL+++LR LA LE +I + +++E E L ILA + +++ EL Sbjct: 848 IDDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEIADLGDILAKPERRRGIIRNELTEI 907 Query: 469 AQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAK----------GHDI 518 A+ YGDDRR+ + + +++ D++ E V + +++ G+ + K G + Sbjct: 908 AEKYGDDRRTRIIAVD--GDVNDEDLIAREEVVVTITETGYAKRTKTDLYRSQKRGGKGV 965 Query: 519 DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTL 576 GL K D + ++ ++F + GR Y LP A +G+ + L Sbjct: 966 QGAGL--KQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVANLLAF 1023 Query: 577 PPG---ATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPP 633 P A V + D L++A+ AG D + G I L +N ++ Sbjct: 1024 QPEERIAQVIQIRSYEDAPYLVLATRAGLVKKSKLTDFDSNRSGGIVAINLRDNDELVGA 1083 Query: 634 VVIEDASDMLLAITQAGRMLMFPVSD 659 V+ D+LL ++ G+ + F +D Sbjct: 1084 VLCAADGDLLL-VSANGQSIRFSATD 1108 Score = 129 bits (324), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 60/110 (54%), Positives = 81/110 (73%), Gaps = 3/110 (2%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 + +Y++Y+M VI+ RALP + DGLKPV RR++YAM + G KSAR+V + +G Y Sbjct: 26 QRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMLDSGFRPDRSHAKSARSVAETMGNY 85 Query: 75 HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP-DDPKSFAAMRYTES 123 HPHGD++ Y+ +V MAQP+S RYPLVDGQGN+G+P +DP AAMRY S Sbjct: 86 HPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPP--AAMRYCVS 133 >UniRef50_C0QRN3 DNA gyrase subunit A n=9 Tax=cellular organisms RepID=C0QRN3_PERMH Length = 1217 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 174/577 (30%), Positives = 312/577 (54%), Gaps = 27/577 (4%) Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RL+K + +L+++ + T D NFD +L EP++LPA+ PN++ NG +GIAVG++T+I Sbjct: 534 TEARLTKLAMEMLADIDKNTVDMKENFDASLMEPEVLPAKFPNLICNGASGIAVGLSTNI 593 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHN EVA+A L + P T+++L ++GPD+PT +IT EI KIY +GRGSV Sbjct: 594 PPHNFSEVAEALKYLAEFPNATVEELCQFIKGPDFPTGGILITPFEEIVKIYTDGRGSVT 653 Query: 241 MRAVWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 ++ + E ++I +P+QV+ ++++IA +R + + DLRDESD + Sbjct: 654 VKGKARIERLPGNRHRIIIYEIPYQVNKVELIKRIAELVRKGQEKGISDLRDESDRDGIR 713 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 ++V D ++V+ L+ T L+KS INL ++ + +P +L +L E++ R Sbjct: 714 --IVVELKREADPEKVLKKLYRRTQLQKSIPINLTVL-VGKQPKTVDLKGLLQEFIKHRV 770 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTET 412 D + RR + LEK RLHI+EGLL A N D VI+I+R+ + A L+ F L++T Sbjct: 771 DVITRRTLFDLEKAENRLHIVEGLLKALENADRVIDIVRSSKDVSSARSQLVEEFELSDT 830 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QA+AIL+++L LE K+ E +L + ++ Q IL+SE + + +E+ + + Sbjct: 831 QAQAILDMRLSRFTALEGDKLYQEADDLRLKIEEYQRILSSEEEKIRVFIEEIDELLEKF 890 Query: 473 GDDRRSPLQEREEAK-AMSEHDMLPSEPVTIVLSQMGWVRSAKGHD----IDAPGLNYKA 527 GD+R++ + E +EA EH +L +L++ + K ++ + K Sbjct: 891 GDERKTVIVEEKEAGLTFEEHYILAVLSSGRILNRRIDDDADKKDIFQKVMNEVVSSVKP 950 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLM 587 G+ + + +S+ P+ F+ G++Y LP +GE G++ + G V Sbjct: 951 GEKLISVQEVESSIPIAFITDKGKAYWSLVADLP----KGE---GRINIDEGEIVGTAFK 1003 Query: 588 -ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI 646 E ++ +L + + G ++ D+ +++ ++I L E+ V+ +D ++ Sbjct: 1004 GEGEEDRLFILTKNGIIKRMSYEDIFYKSQ-NHSIIPLAEDDCVVTAFA-DDHPSLIGVY 1061 Query: 647 TQAGRMLMFPVSDLPQLS-KGKGNKIINIPSAEAARG 682 T+ G +L+F + + K KG + I++ + G Sbjct: 1062 TRKGDLLLFERNQVRVTGDKAKGVEAIDLDEGDTVAG 1098 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 69/113 (61%), Positives = 90/113 (79%), Gaps = 3/113 (2%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 + E ++AYL+Y+M VI+ RA+P + DGLKPVQRRI+YAM+ELGL + +KKSAR VG+ Sbjct: 9 IEEEVKSAYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMNELGLYPNKPYKKSARVVGE 68 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 121 VLGKYHPHGD++ Y+A+V MAQ F+ RYPL+ GQGN+G+ D DP AAMRY Sbjct: 69 VLGKYHPHGDTSVYDALVRMAQDFTLRYPLIQGQGNFGSIDGDPP--AAMRYC 119 >UniRef50_P34030 DNA gyrase subunit A (Fragment) n=704 Tax=Bacteria RepID=GYRA_SPICI Length = 227 Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 111/204 (54%), Positives = 153/204 (75%), Gaps = 3/204 (1%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 +N +L+Y+M VI+ RA+P + DGLKPV RRI+YAM +L + + KKSAR VG+V+GKY Sbjct: 25 KNGFLDYAMSVIVSRAIPDVRDGLKPVHRRIIYAMWDLKMTYEKQHKKSARIVGEVIGKY 84 Query: 75 HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLL 133 HPHGD+A YEAMV MAQ FSYRYPL+DG GN+G+ D DP AAMRYTE+++SK + ++ Sbjct: 85 HPHGDTAVYEAMVRMAQDFSYRYPLIDGHGNFGSMDGDPP--AAMRYTEAKMSKIAGEII 142 Query: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193 ++ + T ++ N+DG+ +EP LP PN+L+NG +GIAVGMAT+IPPHNL EV I Sbjct: 143 KDIEKETTIFIDNYDGSEEEPTFLPGYFPNLLVNGASGIAVGMATNIPPHNLNEVIDGVI 202 Query: 194 ALIDQPKTTLDQLLDIVQGPDYPT 217 A+ P+ T +L+ I++GPD+PT Sbjct: 203 AVTKNPEITTVELMKIIKGPDFPT 226 >UniRef50_A5K033 DNA GyrAse a-subunit, putative n=2 Tax=Plasmodium RepID=A5K033_PLAVI Length = 1263 Score = 238 bits (606), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 153/501 (30%), Positives = 263/501 (52%), Gaps = 44/501 (8%) Query: 12 EFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK-FKKSARTVGDV 70 E +L+Y+ ++I++R L DGLK VQRRI+++M E+ A + +KK AR VG+V Sbjct: 157 ELLSKNFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGAEKRSYKKCARIVGEV 216 Query: 71 LGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS- 129 +GKYHPHGD + Y+A+V +AQ L++G GN+G+ + + AAMRYTE+++S + Sbjct: 217 IGKYHPHGDKSVYDALVRLAQRHHNSNVLINGYGNFGSVE--YNAAAMRYTEAKISNFCY 274 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 ++LL E+ + ++V NFDG EPK+ +++P +L+NG +GIAV + ++IP HNL +V Sbjct: 275 DVLLDEINEENVEYVRNFDGNEIEPKVFCSKVPLLLINGCSGIAVSILSNIPCHNLVDVI 334 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV----W 245 I+ + P D L I++GPD+ T II+ E++ +Y GRGS+ +R+ + Sbjct: 335 NCTISFLLNPSIREDHLSAIIKGPDFTTGGIIISKPNELQNVYHTGRGSIEIRSNVFLEY 394 Query: 246 KKED-----------------------GAVVISALPHQVSGARVLE---QIAAQMRNKKL 279 K+D +VI LP V ++E I + +N+ Sbjct: 395 TKDDKQYVTHVNNLANLHPEDIDSRGSKKLVIKNLPPNVKPNELIENMINILNEKKNEHE 454 Query: 280 PMVDDLRDESDHENPTRLVIVPRSNRV--DMDQVMNHLFATTDLEKSYRINLNMIGLDGR 337 ++ +RDES+ E+ R+V+ R N ++ ++ +F T ++ +Y N IG Sbjct: 455 NILQKIRDESEKED-MRIVLELRKNTQVEQINDFLSFIFKYTQMQTTYHCNFVCIGHQNS 513 Query: 338 PAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEII---R 394 +L L W R +R L + + + K LHI++ ++ I E+I + + Sbjct: 514 YTQFSLKSFLQLWCENRIKFIRNNLTIKNKNLQKELHIIDLYILIQKKILEIISFLQKNQ 573 Query: 395 NEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSE--LEKERDQLQGILA 452 N +E K F L + Q + IL +K++ L ++ + G E L + RD + ++A Sbjct: 574 NIEEIKNFFKKNFQLNDYQIQHILSMKIQKLVNIKNVHF-GPHKEKILTRMRDN-RDLIA 631 Query: 453 SERKMNNLLKKELQADAQAYG 473 ++ L+ +EL YG Sbjct: 632 DVDRIKRLIIEELAYIKNKYG 652 >UniRef50_B3LCM1 Dna gyrase a-subunit, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3LCM1_PLAKH Length = 1173 Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 143/493 (29%), Positives = 263/493 (53%), Gaps = 40/493 (8%) Query: 18 YLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNA-SAKFKKSARTVGDVLGKYHP 76 +L+Y+ ++I++R L DGLK VQRRI+++M E+ A + +KK AR VG+V+GKYHP Sbjct: 186 FLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGAEKSSYKKCARIVGEVIGKYHP 245 Query: 77 HGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS-ELLLSE 135 HGD + Y+A+V +AQ L++G GN+G+ + + AAMRYTE+++S + ++LL E Sbjct: 246 HGDKSVYDALVRLAQKHHNNNLLINGYGNFGSVE--YNAAAMRYTEAKVSNFCYDILLDE 303 Query: 136 LGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIAL 195 + ++V NFDG EPK+L +++P +L+NG +GIAV + ++IP HNL +V I+ Sbjct: 304 INDENIEYVRNFDGNEVEPKVLCSKVPLLLINGCSGIAVSILSNIPCHNLVDVINCTISF 363 Query: 196 IDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV----WKKEDGA 251 + D+L I++GPD+ T II+ ++++ +Y+ G+G++ +R+ + K D Sbjct: 364 LLDANIRDDELAAIIKGPDFSTGGIIISKASQLQNVYQTGKGNIEIRSNVFLEYTKNDKV 423 Query: 252 -----------------------VVISALPHQVSGARVLE---QIAAQMRNKKLPMVDDL 285 +VI LP V ++E I + +N+ ++ + Sbjct: 424 QVIHVNDLPNVNAEDIDTRGSKKLVIKNLPPNVKPNELIENMINILNEKKNEHENILQKI 483 Query: 286 RDESDHENPTRLVIVPRSNRV--DMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNL 343 RDES+ E+ R+V+ R N ++ ++ +F T ++ +Y N IG +L Sbjct: 484 RDESEKED-MRIVLELRKNSQVEQINDFVSFIFKYTQMQITYHCNFVCIGHQNSYTQFSL 542 Query: 344 LEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEII---RNEDEPK 400 L W R + +++ L + + + K LHI++ ++ I E+I + +N +E K Sbjct: 543 KSFLQLWCENRINFIKKNLTIKNQNLQKELHIIDLYILIQKKILEIISFLQKNQNIEEIK 602 Query: 401 PALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNL 460 F L + Q IL +K++ L ++ + + ++ +Q + ++++ K+ L Sbjct: 603 NFFKENFKLNDYQIHHILSMKIQKLVNIKNVDFCTHKEQILARMEQNRDLISNVDKIKRL 662 Query: 461 LKKELQADAQAYG 473 + +L YG Sbjct: 663 IIDQLTYIKNKYG 675 >UniRef50_Q0QCM0 GyrA (Fragment) n=297 Tax=Bacteria RepID=Q0QCM0_ECOLX Length = 211 Score = 230 bits (586), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 112/211 (53%), Positives = 157/211 (74%), Gaps = 4/211 (1%) Query: 1 MSDMAERLA---LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 57 MSD+A + + E +++YL+Y+M VI+ RALP + DGLKPV RR++YAM+ LG + + Sbjct: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 Query: 58 AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 117 +KKSAR VGDV+GKYHPHGD A Y+ +V MAQPFS RY LVDGQGN+G+ D S AA Sbjct: 61 KAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAA 119 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 MRYTE RL+K + L+++L + T D+V N+DGT + P ++P ++PN+L+NG++GIAVGMA Sbjct: 120 MRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 179 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLD 208 T+IPPHNL EV +A ID +++ L++ Sbjct: 180 TNIPPHNLTEVINGCLAYIDDEDISIEGLME 210 >UniRef50_Q8I0X3 DNA gyrase subunit A;evidence=inferred from direct assay n=9 Tax=Plasmodium RepID=Q8I0X3_PLAF7 Length = 1222 Score = 229 bits (583), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 143/502 (28%), Positives = 265/502 (52%), Gaps = 38/502 (7%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK-FKKSART 66 + + E ++L+Y+ ++I++R L DGLK VQRRI+++M E+ K +KK AR Sbjct: 175 VEICEILSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGIDKKGYKKCARI 234 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VG+V+GKYHPHGD + Y+A+V +AQ L+ G GN+G+ + + AAMRYTE+++S Sbjct: 235 VGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLIKGYGNFGSVE--YNAAAMRYTEAKIS 292 Query: 127 KYS-ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 + ++LL E+ +++ NFDG +EPK+L +++P +L+NG +GIAV + + IP HNL Sbjct: 293 SFCYDILLDEINDENVEYIKNFDGNEREPKVLCSKIPLLLINGCSGIAVSILSSIPCHNL 352 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV- 244 +VA I + D+L I++GPD+ T II+ ++ IY +G+G+ +R+ Sbjct: 353 IDVANCCINFLINENIRDDELFHIIKGPDFSTGGIIISKYDILKNIYNSGKGNFEIRSNV 412 Query: 245 ---WKKEDGAV-----------------------VISALPHQVSGARVLEQIAAQMRNKK 278 + K D V +I LP V ++E I + +KK Sbjct: 413 FFEYIKNDKKVITKHINDLSSIENSDIDKLTKKIIIKNLPPNVKPNELIENIINLLNDKK 472 Query: 279 LPMVDDL---RDESDHENPTRLVIVPRSNRVD-MDQVMNHLFATTDLEKSYRINLNMIGL 334 + L RDES+ E+ ++ + + ++++ + +++LF T+++ SY N IG Sbjct: 473 NEHDNILLRIRDESEKEDMRIVLELKKHSQIEQIHNFLSYLFKYTNMQISYHCNFVCIGY 532 Query: 335 DGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEII- 393 + +L + W R ++ + + + K+L+I++ L+ I ++I Sbjct: 533 ENTYTQFSLKSFIKLWCNNRIKFIKTNYEIKNKNLQKQLNIIDLYLIIQNKILDIITFFQ 592 Query: 394 --RNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451 +N ++ + L + F L Q + IL +KL+ L ++ + +++++ + I+ Sbjct: 593 KNQNIEQIQLYLKNNFKLNPEQIKYILSIKLQKLINIKNIDFISQRNKIMHQIKLNDEII 652 Query: 452 ASERKMNNLLKKELQADAQAYG 473 + + + NL+ +EL YG Sbjct: 653 NNVQNIKNLIIQELIYIKNKYG 674 >UniRef50_UPI0001906031 DNA topoisomerase IV subunit A n=2 Tax=Rhizobium etli RepID=UPI0001906031 Length = 455 Score = 198 bits (503), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 108/304 (35%), Positives = 176/304 (57%), Gaps = 12/304 (3%) Query: 376 LEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRG 435 L GLL+A+LNIDEVI IIR EDEPKP +++R+ LT+ Q EAIL ++LR L KLEE +IR Sbjct: 1 LGGLLIAYLNIDEVIRIIREEDEPKPVMVARWDLTDNQVEAILNMRLRSLRKLEEFEIRK 60 Query: 436 EQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD-----DRRSPLQEREEAKAMS 490 E EL KE+ +++ +LAS+ K + E+ + + RR+ + EA + Sbjct: 61 EFDELTKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFADAPEADEEA 120 Query: 491 -EHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDST 549 + M+ EP+T+V+S+ GW+R+ KGH D L +K GD K A ++ ++ V + Sbjct: 121 IQQAMIEKEPITVVISEKGWIRALKGHIADTATLTFKEGDGLKVAFPAQTTDKILIVTTG 180 Query: 550 GRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFN 609 G+++ + LP RG GEPL + + V + +K L+ S AG GFV Sbjct: 181 GKAFTLGGDKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDPSRKQLIVSTAGNGFVVAEA 240 Query: 610 DLVARNRAGKAL--ITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGK 667 +L+A R GK + + LPE ++ PV + D + + + ++L+FP++ +P++++GK Sbjct: 241 ELIANTRKGKQIMNVALPEETQLLVPV----SGDHVAVVGENRKLLVFPLAQVPEMTRGK 296 Query: 668 GNKI 671 G ++ Sbjct: 297 GVRL 300 >UniRef50_B1PL26 Topoisomerase IV (Fragment) n=184 Tax=cellular organisms RepID=B1PL26_ECOLX Length = 88 Score = 186 bits (472), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 87/88 (98%), Positives = 87/88 (98%) Query: 47 YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 106 YAMSELGLNASAKFKKSARTVGDVLGKYHPHGD ACYEAMVLMAQPFSYRYPLVDGQGNW Sbjct: 1 YAMSELGLNASAKFKKSARTVGDVLGKYHPHGDIACYEAMVLMAQPFSYRYPLVDGQGNW 60 Query: 107 GAPDDPKSFAAMRYTESRLSKYSELLLS 134 GAPDDPKSFAAMRYTESRLSKYSELLLS Sbjct: 61 GAPDDPKSFAAMRYTESRLSKYSELLLS 88 >UniRef50_B9XEN7 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=bacterium Ellin514 RepID=B9XEN7_9BACT Length = 701 Score = 183 bits (465), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 147/481 (30%), Positives = 247/481 (51%), Gaps = 55/481 (11%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 LH+ + ++L Y+ YVI DRA+P + DGLKPVQRRI++++ E +F K A T+ Sbjct: 60 LHKRMDFSFLEYASYVIRDRAIPNLADGLKPVQRRILWSLHE---KDDGRFIKVA-TISG 115 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 +YHPHG++A +A+V++ RY L++GQGN+G AA RY E RL++ + Sbjct: 116 HCAQYHPHGEAAIGDALVVITNK---RY-LIEGQGNFGNIYTGDPAAAPRYIECRLTELA 171 Query: 130 --ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 EL EL ++VP++DG +EP LP++LP +L+ GT GIAVGM+ I PHN E Sbjct: 172 RNELFNDEL----TEFVPSYDGRNKEPVTLPSKLPTLLMLGTEGIAVGMSCKILPHNFPE 227 Query: 188 VAQAAIALI-DQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 + +A IA++ QP L PD+PT ++ +R Y +G+GS+++RA K Sbjct: 228 LLEAQIAILKKQPFKVL---------PDFPT-GGLMDARE-----YADGKGSIKVRAKIK 272 Query: 247 -KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPM--VDDLRDESDHENPTRLVIVPRS 303 K++ VVI +P + ++ I R K+ + ++D E + + Sbjct: 273 AKDESTVVIKEIPPMTTTDSLIGSIEDASRKGKIKIKSINDFTSEEAE------IEIKAP 326 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLN 363 + V DQ+++ L+A TD E S + +I + RP + E+L E DT++R L Sbjct: 327 SGVSADQLIDALYAFTDCEMSISSRIIVI-RNNRPVEMTVSEVLRENTAQLVDTLKRELE 385 Query: 364 YRLEKVLKRLHILEGLLVAFLN--IDEVIEIIRNEDEPKPALMSRF---------GLTET 412 + +K+ + LH + L+ F+ I + IE + + A+ F L +T Sbjct: 386 LKEKKLQEELH-FKTLVRIFIENRIYKKIEQCKTNEAVYEAVYDGFKPFRKEMIRDLVDT 444 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 E +L +++R ++ + I + E++K + L + + L+A + Y Sbjct: 445 DVEMLLGVRIRRISLFD---INKHREEIDKIKADLSETAKHLKNLTKYAIGRLEALLEKY 501 Query: 473 G 473 G Sbjct: 502 G 502 >UniRef50_C9RLW5 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLW5_FIBSS Length = 846 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 147/519 (28%), Positives = 248/519 (47%), Gaps = 70/519 (13%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 L + +L+Y+ YVI+DRA+P+ DGLKPVQRRI+++M E N +++K A VG Sbjct: 18 LERLYDGWFLDYASYVILDRAVPYFEDGLKPVQRRILHSMFE---NHDGRYQKVATIVGR 74 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 + YHPHGD++ +A+V + Q + L+D QGNWG P AA RY E RL+ ++ Sbjct: 75 TMA-YHPHGDASIGDALVGLGQ----KNLLIDTQGNWGNPYTGDRAAAPRYIEGRLTPFA 129 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 ++ T +W+P++DG +EP LP + P +L G GIAVG++T I PHN RE+ Sbjct: 130 VDVV--FNPETTEWIPSYDGRSEEPVTLPVKFPLLLAQGVDGIAVGLSTSILPHNFRELC 187 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR--GSVRMRAVWKK 247 +A+IA + K TL PD+ T I S Y +G+ G V++RA +K Sbjct: 188 EASIACLRGKKFTL--------YPDFFTGGIIDVSD------YNDGQRGGKVKVRAKIEK 233 Query: 248 EDG-AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRV 306 D + I +P+ + ++E I K+ ++ D+ + ++V Sbjct: 234 VDNKTLAIREIPYGTTTVSLIESIVKANDKGKIK----IKHVDDNTSQGVEILVHLQPGT 289 Query: 307 DMDQVMNHLFATTDLEKSYRINLNMIGLDGRP---AVKNLLEILSEWLVFRRDTVRRRLN 363 D ++ L+A TD EKS +I +D P V ++L++ +E V + L Sbjct: 290 DPQVAIDALYAFTDCEKSLSPCTCVI-IDKHPKFVGVSDILKLNTEHTV-------KLLE 341 Query: 364 YRLEKVLKRLH------ILEGLLV---------AFLNIDEVIEIIRNEDEPKPALMSRFG 408 + L LK L LE + + + +++I ++R P + R Sbjct: 342 WELANELKHLEDKWHMTTLEKIFIEKEVYEVIKKAKDREQIIRLVREGLTPYLKRLHRQT 401 Query: 409 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEK-----ERDQLQGILASERKMNNLLKK 463 +T+ + ++E+ +R ++ + K ELE+ + +Q I + N+LKK Sbjct: 402 VTDEEIGKLIEIPIRRISHYDREKADQLLQELEENIAKCKYNQEHIIDYAVNHFKNILKK 461 Query: 464 ELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTI 502 YG+ + Q E K + H L ++ + + Sbjct: 462 --------YGEGKERRTQIAEFGKVNAVHVALANQKLYV 492 >UniRef50_Q00TB8 DNA gyrase A subunit (ISS) (Fragment) n=1 Tax=Ostreococcus tauri RepID=Q00TB8_OSTTA Length = 475 Score = 175 bits (443), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 84/151 (55%), Positives = 110/151 (72%), Gaps = 2/151 (1%) Query: 38 LKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRY 97 +KPV RRI++ M ELGL + +K AR VGDVLGK+HPHGD A YEA+V +AQ FS Sbjct: 31 VKPVHRRILFGMHELGLRSDKPHRKCARVVGDVLGKFHPHGDGAVYEALVRLAQDFSMSA 90 Query: 98 PLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSE-LLLSELGQGTADWVPNFDGTLQEPKM 156 PLVDG GN+G+ DD AAMRYTE RL+K SE LL+++ + FDG+ EP++ Sbjct: 91 PLVDGHGNFGSLDDDPP-AAMRYTECRLNKVSEKALLADIASECVGFTETFDGSQTEPEV 149 Query: 157 LPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 LPAR+PN+L+NG++GIAV +AT++ PHNL E Sbjct: 150 LPARVPNLLINGSSGIAVAVATNMAPHNLGE 180 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/208 (32%), Positives = 116/208 (55%), Gaps = 5/208 (2%) Query: 307 DMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRL 366 D V+ L+ T LE +Y +N N+ + +P V L ++L E++ FR DT+ RR + L Sbjct: 217 DASTVLAELYKKTRLEVNYNVN-NVALVGNKPTVMPLRDMLDEFIKFRVDTIERRTRFML 275 Query: 367 EKVLKRLHILEGLLVAFLNIDEVIEIIR-NEDEPKPA--LMSRFGLTETQAEAILELKLR 423 K R H++EG + D V++IIR ++D P A L + GL+E Q++AIL + LR Sbjct: 276 GKAQDRKHLVEGFAFVLTDADGVVKIIRGSKDGPSAAKKLREKHGLSEIQSDAILAMPLR 335 Query: 424 HLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQER 483 L LE K+ E +L + + QG+L + K+ ++L +E Q A+ +RR+ L++ Sbjct: 336 RLTGLEADKLDAELKDLNGQIEYYQGLLNDKSKVIDVLIQEAQEAKTAFARERRTTLEQT 395 Query: 484 EEAKAMSEHDMLPSEPVTIVLSQMGWVR 511 + + E + P + + I LS+ G+V+ Sbjct: 396 GPSDGVIEDEGPPKDNI-ITLSERGYVK 422 >UniRef50_B2ZYK7 Type IIA topoisomerase n=1 Tax=Ralstonia phage RSL1 RepID=B2ZYK7_9CAUD Length = 514 Score = 171 bits (434), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 144/495 (29%), Positives = 236/495 (47%), Gaps = 40/495 (8%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 +L +F Y V +DR++P + DGLKPVQRRI+++ S++ +F+KSAR G Sbjct: 25 SLKDFGRRNMTIYGTTVNLDRSVPDLYDGLKPVQRRILWSASQV---CRTQFEKSARLTG 81 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 +G YHPHG+SA Y A V M Q S P + G+GN+G+ D AA RYT RLS Y Sbjct: 82 HCMGAYHPHGNSAIYSAAVNMVQHPS---PTLLGKGNFGSMTD--GAAAERYTNVRLSHY 136 Query: 129 SELLLSE--LGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 + + T +VPN+D EP LPA+LPN+LLNG GI VG+ T +P Sbjct: 137 GQTFFDSDYINAETTSFVPNYDDKDVEPVTLPAQLPNVLLNGGEGIGVGITTKLPTFTPE 196 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTE--AEIITSR---AEIRKIYENGRGSVRM 241 V + + K Q +D + Y + +++ S+ A+ ++++ +++ Sbjct: 197 SVLEVLNRMFKGEKL---QAVDFAKTLKYHHKWGGQLVRSKENQAQWKQMFVGSMANLQF 253 Query: 242 RAV--WKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 AV ++ + IS+ P + ++++ A +P + S ++ Sbjct: 254 EAVLDLDRDHKRMTISSWPPGTNLETFMKKVRA------MPECHKCFN-SKGTTTYQIEC 306 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLN---MIGLDGRPAVKNLLEILS------EW 350 P N D+ + + T ++++IN+ +DG K LS +W Sbjct: 307 KPGFNYDQFDKFVEKVRKATMQRQAFKINVTRREAKTVDGVTTFKTEFLALSVPDLILQW 366 Query: 351 LVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLT 410 R + L YR++K + + L+ A +D + + +R D P +L +T Sbjct: 367 CRMRVALELKSLAYRIKKQEAAIAYSKLLIYAVDKLDLIFKALRQSD-PDASLQKLLKIT 425 Query: 411 ETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQ 470 QA+ IL+L++R L+KL++ K++G E+E QLQ A K LL +L A Q Sbjct: 426 AEQAKQILDLQVRKLSKLDQSKLKGTLKTQEQELKQLQTWQAKP-KAQVLL--DLAAVQQ 482 Query: 471 AYGDDRRSPLQEREE 485 A DR L+E + Sbjct: 483 ALDKDRNFKLKESTQ 497 >UniRef50_C6XSV0 DNA topoisomerase (ATP-hydrolyzing) n=61 Tax=Bacteria RepID=C6XSV0_PEDHD Length = 977 Score = 169 bits (428), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 123/406 (30%), Positives = 209/406 (51%), Gaps = 46/406 (11%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 EN +L+Y+ YVI+DRA+P I DGLKPVQRRI++++ E+ +F K+A +G+ + KY Sbjct: 25 ENWFLDYASYVILDRAVPHINDGLKPVQRRIMHSLKEMD---DGRFNKAANVIGNTM-KY 80 Query: 75 HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLS 134 HPHGD++ +AMV + Q + L+D QGNWG P + AA RY E+RLSK++ ++ Sbjct: 81 HPHGDASIGDAMVQIGQ----KDLLIDCQGNWGDPITGDNAAAPRYIEARLSKFANEVV- 135 Query: 135 ELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIA 194 T W ++DG EP LP + P +L G GIAVG+AT + PHN E+ A+I Sbjct: 136 -FNGDTTIWQLSYDGRNNEPVTLPVKFPLLLAQGAEGIAVGLATKVMPHNFIELLDASIE 194 Query: 195 LIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGS-VRMRA-VWKKEDGAV 252 + + + PD+ T A+ E RG +R+RA + +K+ + Sbjct: 195 ALQGHRPNI--------LPDFFT-----GGMADFSAYNEGMRGGRIRVRAKITEKDKKTL 241 Query: 253 VISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVM 312 VI+ +P+ + V++ I + K+ + + + H +++ + + D + Sbjct: 242 VITEIPYSTTTGSVIDSILSANDKGKIKIKKIEDNTAAHVE----IVIQLAPGISPDVTI 297 Query: 313 NHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKR 372 + L+A T E S N +I D +P ++ +IL E + + +++ L +L ++ ++ Sbjct: 298 DALYAFTSCEVSISPNTCIIK-DEKPQFLSVNDILIENSMHTKALLKKELEIKLHELQEK 356 Query: 373 LHILEGLLVAFL--------------NIDEVIEIIRNEDEP-KPAL 403 + LL F+ N + V+E++ EP KP L Sbjct: 357 I-FFSSLLKIFIQEGMYKNAEYENSVNFEMVVEVLNRLFEPFKPGL 401 >UniRef50_UPI000038387A COG0188: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI000038387A Length = 363 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 129/371 (34%), Positives = 199/371 (53%), Gaps = 31/371 (8%) Query: 264 ARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEK 323 AR++E++A ++ KKLP++ D+RDES + R+V+ PRS VD +M LF ++LE Sbjct: 4 ARLIEKLADLLQEKKLPLLADVRDESAED--VRVVLEPRSRSVDPVMLMESLFRLSELEA 61 Query: 324 SYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAF 383 +NLN++ P V L E L EW+ RR ++RR YRL ++ +RL IL GLL+ + Sbjct: 62 RVPLNLNVLVGGVVPRVIGLAEALREWVDHRRVVLQRRSTYRLGQIERRLEILGGLLIVY 121 Query: 384 LNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKE 443 L++DEVI IIR EDEPK ALM+RF LT+ QA AIL+ +LR L KLEEM+++ E EL KE Sbjct: 122 LDLDEVIRIIREEDEPKAALMARFELTDVQANAILDTRLRSLRKLEEMELKREFDELTKE 181 Query: 444 RDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIV 503 + ++ +L SE+ + K+++A + +G E K L + P T Sbjct: 182 KQGIEELLGSEKLQWADITKQIRAVKKTFG----------PETKLGKRRTTLENPPDTAG 231 Query: 504 L---SQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV----KGKSN-QPVVFVDSTGRSYA- 554 + ++ G R+ G + GL+ +A + V +G+ + + VV G+ A Sbjct: 232 IDFTARHGRARADHGDPVRE-GLDPRAEGARHRPVGRLLQGRRHAEGVVPQRDDGQDPAA 290 Query: 555 ------IDPITLPSAR---GQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFV 605 + P + +AR G G+P+ + L G + L + KLL A G GF+ Sbjct: 291 RLERQGLHPRGVEAARAGPGFGDPVRLMVDLDDGTEIVAALPYKPESKLLFAGSDGRGFI 350 Query: 606 CTFNDLVARNR 616 + L A R Sbjct: 351 APSDALFANTR 361 >UniRef50_D2QEJ6 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Bacteroidetes RepID=D2QEJ6_9SPHI Length = 904 Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 143/487 (29%), Positives = 234/487 (48%), Gaps = 48/487 (9%) Query: 15 ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 EN +L+Y+ YVI++RA+P + DGLKPVQRRI++A+ E+ +F K A +G + ++ Sbjct: 57 ENYFLDYASYVILERAVPAVEDGLKPVQRRILHALKEMD---DGRFNKVANVIGQTM-QF 112 Query: 75 HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLS 134 HPHGD++ EA+V + Q + L D QG+WG AA RY E RLSK+++ + Sbjct: 113 HPHGDASIGEALVNIGQ----KELLFDTQGSWGDVRTGDGAAAPRYIEVRLSKFAQDAI- 167 Query: 135 ELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIA 194 T +W ++DG +EP LP + P +L G GIAVG++T I PHN E+ A+I Sbjct: 168 -YNDKTTEWQLSYDGRKREPITLPVKFPLLLAQGVEGIAVGLSTKILPHNFNELIDASIN 226 Query: 195 LI-DQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR--GSVRMRAVWKKEDGA 251 ++ D+P + PD+ T I S Y +G G VR+RA ++ D Sbjct: 227 ILKDKPVSLF---------PDFQTGGLIDVSN------YNDGHRGGKVRVRAKIEEVDKK 271 Query: 252 VV-ISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDES---DHENPTRLVIVPRSNRVD 307 ++ I +P+ V+ +++++ I K+ + R+ + D+ ++V V Sbjct: 272 ILAIRDVPYGVTTSQLIDSIVKAAELGKIRIKAPSRNVAAVVDNTAKDVEILVHLQPGVS 331 Query: 308 MDQVMNHLFATTDLEKSYRINLNMIGLDG----------RPAVKNLLEILSEWLVFRRDT 357 D ++ L+A TD E S N +I D R + +L L RR Sbjct: 332 PDVTIDALYAFTDCEVSISPNACVIIGDKPHFVSVTDILRVNTHQTVHLLQRELEIRRSE 391 Query: 358 VRRRLNY-RLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEA 416 + RL Y LEK+ I + + V+E I +P L R +T+ Sbjct: 392 LMERLLYSSLEKIFIENRIYRKIEEC-ETFEAVLEAIDKALKPHKKLFYRV-ITQDDLIR 449 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDR 476 + E+K++ ++K + K LE+E + + LA+ + K+LQ + YG R Sbjct: 450 LTEIKIKRISKYDGFKAEELMRRLEQELAETEDNLANITRFAIAYYKDLQ---KKYGKGR 506 Query: 477 RSPLQER 483 + R Sbjct: 507 ERKTEIR 513 >UniRef50_D1QVZ0 DNA topoisomerase 4 subunit A n=2 Tax=Prevotella RepID=D1QVZ0_9BACT Length = 978 Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 123/390 (31%), Positives = 200/390 (51%), Gaps = 43/390 (11%) Query: 2 SDMAERLALHEFT---ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASA 58 +D + A+H + +N +L+Y+ YVI++RA+P I DGLKPVQRRI+++M + Sbjct: 103 ADRFDASAVHHLSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DG 159 Query: 59 KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 118 ++ K A VG + ++HPHGD++ +A+V M Q + L+D QGNWG AA Sbjct: 160 RYNKVANIVGHTM-QFHPHGDASIGDALVQMGQ----KDLLIDCQGNWGNILTGDRAAAP 214 Query: 119 RYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMAT 178 RY E+RLSK++ L T DW ++DG +EP LP + P +L G GIAVG+++ Sbjct: 215 RYIEARLSKFA--LDVVFNPKTTDWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSS 272 Query: 179 DIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR-- 236 + PHNL E+ AAI + D PD+PT I S+ Y +G+ Sbjct: 273 KLLPHNLNEICDAAIKYLRGE--------DFQLYPDFPTGGAIDVSK------YNDGQRG 318 Query: 237 GSVRMRA-VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 G +++RA + K ++ +VI +P + +++ I + K+ + D + E Sbjct: 319 GVLKVRAKIEKLDNKTLVIREIPFSKTTTTLIDSILKAIDKGKIK-AKRVDDNTAAEVEI 377 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 ++ + P V D+ M+ L+A +D E + N +I D +P + ++L R Sbjct: 378 QVHLAP---GVSSDKTMDALYAFSDCEINISPNCCVIE-DNKPCFLTVSDVL-------R 426 Query: 356 DTVRRRLN-YRLEKVLKRLHILEGLLVAFL 384 V R + R E ++R +LE L A L Sbjct: 427 HGVDRTMGLLRKELQIRRGELLEQLFFASL 456 >UniRef50_Q73KU9 Topoisomerase IV, A subunit, putative n=2 Tax=Treponema RepID=Q73KU9_TREDE Length = 703 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 138/460 (30%), Positives = 224/460 (48%), Gaps = 61/460 (13%) Query: 13 FTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLG 72 F +N +L Y+ YVI DRA+P + DGLKPVQRRI++++ E+ KF K A +G + Sbjct: 8 FNKN-FLEYASYVIRDRAIPDLEDGLKPVQRRILHSLFEMD---DGKFHKVANVIGHCM- 62 Query: 73 KYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELL 132 KYHPHGD++ A+V++A + +D QGN+G +A RY E R++++++ + Sbjct: 63 KYHPHGDASIGNALVVLAS----KELFIDTQGNFGNIFTGDEASAPRYIECRVNEFAKTI 118 Query: 133 LSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAA 192 D+ ++DG +EP A+LP IL G GIAVGM+T I PHN+ E+ +A Sbjct: 119 F--YNPHITDYTVSYDGRNKEPLAFRAKLPVILAIGAEGIAVGMSTKILPHNILEIIEAE 176 Query: 193 IALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA- 251 A + L PD+PT I S YE+G G V +RA D Sbjct: 177 KAFLSGKSFAL--------FPDFPTGGLIDVSE------YEDGLGKVLVRAKLDTSDEKR 222 Query: 252 VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQV 311 +VI LP + ++ I A + K+ + ++ D + EN + +PR V V Sbjct: 223 IVIRELPFGSTTESMINSIEAASKAGKVK-ISEISDYTG-ENVEIELKLPRG--VYSADV 278 Query: 312 MNHLFATTDLEKSYRINLNMIGLDGRPA-----------VKNLLEILSEWLVFRRDTVRR 360 ++ L+A T+ E+S NL +I D P K L++IL + L + R + Sbjct: 279 VDALYAFTECEQSIPCNLLVIK-DNLPVQITVTDIIKYHAKQLMQILKDELEYERAMLTE 337 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRF---------GLTE 411 RL+ R L+R+ I E I + IE ++ + A++ F +TE Sbjct: 338 RLHLR---TLERIFIEE-------RIYKKIETMKTAEGVINAVIKGFVPFKKELIRDVTE 387 Query: 412 TQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451 + +L++ +R ++ + K R E E+ ++ +L Sbjct: 388 DDVDKLLKIPIRRISLYDINKNREEVREINNRLKEIAKLL 427 >UniRef50_C3JAA3 DNA gyrase subunit A n=3 Tax=Bacteria RepID=C3JAA3_9PORP Length = 899 Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 118/373 (31%), Positives = 188/373 (50%), Gaps = 36/373 (9%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 +D+ +L + +L+Y+ YVI++RA+P I DGLKPVQRRI+YAM L + Sbjct: 40 TDVVRLHSLPQMYRTWFLDYASYVILERAVPHIEDGLKPVQRRILYAMQ---LFENGHLH 96 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K A+ VG + +HPHGD++ +A+V + Q + L+D QGNWG AA RY Sbjct: 97 KVAKIVGQTMA-FHPHGDASINDALVQLGQ----KGFLIDTQGNWGNTLTGDEAAAGRYI 151 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E++LS + +L +W +DGT EP LP R P +L G GIAVG+++ I Sbjct: 152 EAKLSSLALEVL--FDSKLTEWKRTYDGTADEPVALPVRFPLLLAQGAEGIAVGLSSRIY 209 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR--GSV 239 PHN +E+ +AAIA + L PD+PT + + Y +G G++ Sbjct: 210 PHNPKELLEAAIAYLRGESFEL--------YPDFPTGGLLDVDK------YNDGHRGGAL 255 Query: 240 RMRA-VWKKEDGAVVISALPHQVSGARVLEQI--AAQMRNKKLPMVDDLRDESDHENPTR 296 + RA + K +D + I+ LP + ++E I A + K+ +DD+ T Sbjct: 256 KCRAKIEKIDDRVLSITELPFGKTTTSLIESILKANEKGKIKIKHIDDM------TAATA 309 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 + + V D+ ++ L+A TD E N +I +G P + ++L ++ Sbjct: 310 DIRIQLPAGVSTDKTIDGLYAFTDCEVGLSPNACVIK-EGTPVFLGVSDLLKYSADRTKE 368 Query: 357 TVRRRLNYRLEKV 369 + +LNYRL +V Sbjct: 369 LLVAQLNYRLGEV 381 >UniRef50_A4CLF9 DNA topoisomerase IV subunit A n=21 Tax=Bacteria RepID=A4CLF9_9FLAO Length = 907 Score = 155 bits (392), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 123/383 (32%), Positives = 195/383 (50%), Gaps = 48/383 (12%) Query: 5 AERLALHEFT---ENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 AE+ AL T ++ +L+Y+ YVI++RA+P I DG KPVQRRI++A+ E+ ++ Sbjct: 15 AEQEALTRVTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHALKEMD---DGRYN 71 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K A VG + +YHPHGD++ +AMV + Q + L+D QGNWG AA RY Sbjct: 72 KVANVVGQTM-QYHPHGDASIADAMVQIGQ----KDLLIDTQGNWGNILTGDGAAASRYI 126 Query: 122 ESRLSKYS-ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 E+RLSK++ E++ S +W ++DG +EP LP + P +L G GIAVG++T I Sbjct: 127 EARLSKFALEVVFS---PKITEWQLSYDGRKKEPVHLPVKFPLLLAQGAEGIAVGLSTKI 183 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR--GS 238 PHN E+ A+I + + L PD+PT I Y +G G Sbjct: 184 LPHNFIELIDASIKHLQGKRFKL--------YPDFPTAGIIDIGN------YNDGERGGK 229 Query: 239 VRMRA-VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 VR+RA + +++ +VIS +P+ + + +++ I N K + +++ L Sbjct: 230 VRVRARIAQQDKNTLVISEIPYGTNTSSLIDSILKA--NDKGKIKIKKIEDNTAAEVEIL 287 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 V +P + D+ ++ L+A T E S L I D +P + E+L Sbjct: 288 VHLPSG--ISPDKTIDALYAFTACETSIS-PLGCIIEDNKPVFMGVSEML---------- 334 Query: 358 VRRRLNYRLEKVLKRLHILEGLL 380 RR ++ +E + L IL G L Sbjct: 335 -RRSTDHTVELLQAELEILLGEL 356 >UniRef50_D1N6B5 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Bacteria RepID=D1N6B5_9BACT Length = 877 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 139/484 (28%), Positives = 236/484 (48%), Gaps = 52/484 (10%) Query: 18 YLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPH 77 +L Y+ YVI DRA+P + DGLKPVQRR+++A+ ++ + K A VG+ + YHPH Sbjct: 56 FLEYASYVIKDRAIPDVDDGLKPVQRRVLWALYQV---YDGRTHKVANVVGNTM-HYHPH 111 Query: 78 GDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELG 137 G+++ +A+V++A Y + QGN+G AA RY E LS +L Sbjct: 112 GNASIEDALVVLANKEYY----ITRQGNFGNILTGSPAAAGRYIECSLSPLGHEVL--FN 165 Query: 138 QGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALID 197 ++V +DG EP LPA++P++L+ G+ GIAVGMAT I PHN E+ +A IA++ Sbjct: 166 NDITEFVDTYDGRGVEPVTLPAKVPSLLMLGSDGIAVGMATKIMPHNFNELLEAEIAVLR 225 Query: 198 QPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGAVVISAL 257 + L D QG ++R+ Y +G G + +RA + ++I + Sbjct: 226 GEEFEL--YPDFQQG-----------GLMDVRE-YNDGNGKITLRAKIEIVGRDLIIREI 271 Query: 258 PHQVSGARVLEQI--AAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHL 315 P S ++ I AA+ K+ V+D + + +VP + D ++ M L Sbjct: 272 PATTSTETLVASIEKAAEKNKIKISSVNDYTTDK-----VEIKVVP-TRGYDPEKTMQGL 325 Query: 316 FATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHI 375 + TD S +N+ +I + RP ++ E+L + ++R L L K H Sbjct: 326 YMYTDCSVSISVNMTVI-RENRPVQMSVSEVLRRNADKLLEYLKRELEIDLAKQEDLFHA 384 Query: 376 LEGLLVAFLN-IDEVIEIIRNEDE----------PKPALMSRFGLTETQAEAILELKLRH 424 + F N I + IE ++E E P L+ R +T+ + +L L +R Sbjct: 385 KTLAQIFFENRIYKKIEECKSEKEEYTEVHAGLAPFRHLLRR-DVTDQDIDKLLALPVRR 443 Query: 425 LAKLEEMKIRGEQSELEKERDQLQGILASERKMN-NLLKKELQADAQAYGDD--RRSPLQ 481 +++ + K + E +E+ + ++++ L S +K N L+K L YG D RR+ ++ Sbjct: 444 ISRFDIEKNQRELAEVLAKMEEIKKNLGSLKKYAINYLRKLL----DKYGKDFPRRTEIE 499 Query: 482 EREE 485 E+ Sbjct: 500 HFEK 503 >UniRef50_A6DRS7 DNA topoisomerase IV subunit A n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DRS7_9BACT Length = 808 Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 111/331 (33%), Positives = 174/331 (52%), Gaps = 30/331 (9%) Query: 18 YLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPH 77 +++Y+ YVI DRA+P + DGLKPVQRRI++ + + KF K A VG + YHPH Sbjct: 41 FIDYASYVIKDRAIPDVDDGLKPVQRRILHTLFKAD---DGKFHKVANIVGACMA-YHPH 96 Query: 78 GDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELG 137 GDS+ Y A+V +A + ++ QGN+G + +A RY E RLS + L Sbjct: 97 GDSSIYGALVTVAN----KEYFIEKQGNFGNILTGDNASAARYIECRLSPLARETL--FN 150 Query: 138 QGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALID 197 T ++V ++DG +EP LPA++P +L+ GT GIAVGMAT I PHN E+ +A I ++ Sbjct: 151 TETTEFVDSYDGRNKEPVCLPAKVPALLMMGTEGIAVGMATRILPHNFNELLKAQIKILR 210 Query: 198 QPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA-VWKKEDGAVVISA 256 Q +I PD+ + S+ Y+ GRG V +RA + + +VI Sbjct: 211 ------GQRFEIY--PDFLCGGIMDISQ------YDFGRGKVTVRAKIDILNNKTLVIKQ 256 Query: 257 LPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLF 316 + + ++ I +N K+ + ++D + E+ + +PR V D +N L+ Sbjct: 257 VAPGTTTESLMSSIEEAAKNGKIKIA-SIQDYT-AEHVEIEINLPRG--VQADWALNALY 312 Query: 317 ATTDLEKSYRINLNMIGLDGRPAVKNLLEIL 347 A T E S N+ +I GRP ++ E+L Sbjct: 313 AFTQCEVSLSPNITVIQ-RGRPKEIHVGEVL 342 >UniRef50_B1ZME1 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Opitutaceae RepID=B1ZME1_OPITP Length = 708 Score = 148 bits (373), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 120/364 (32%), Positives = 192/364 (52%), Gaps = 36/364 (9%) Query: 16 NAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYH 75 N +L+Y+ YVI+DRA+P I DGLKPVQRRI++ M E+ +F K A VG + ++H Sbjct: 72 NWFLDYASYVILDRAVPHIDDGLKPVQRRILHTMWEM---EDGRFHKLANIVGATM-RFH 127 Query: 76 PHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSE 135 PHGD++ A+V + Q R LV+ QGN+G AA RY E+RL+ +++ +L Sbjct: 128 PHGDASIGAALVGLGQ----RGFLVEPQGNFGNLLTGDDAAAPRYIEARLTAFAKDVL-- 181 Query: 136 LGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIAL 195 T W ++DG +EP LPA+ P +LL G GIAVG+AT I PHN ++ +AAI Sbjct: 182 FNPKTTPWQLSYDGRAREPVTLPAKFPIVLLEGAEGIAVGLATKILPHNFNDLCRAAINH 241 Query: 196 IDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR--GSVRMRA-VWKKEDGAV 252 + Q KT PD+PT + +E Y +G G V++RA + + + Sbjct: 242 L-QGKT-------FRIYPDFPTGG--VADFSE----YNDGERGGKVKIRAKIEIRSKYLL 287 Query: 253 VISALPHQVSGARVLEQI-AAQMRNK-KLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQ 310 I+ LP + ++E I AA + K K+ VDD + + LV +P+ + D ++ Sbjct: 288 AITELPFGSTTESLIESILAANAKGKIKIRHVDD----NTADAVEILVHLPQGS--DPEK 341 Query: 311 VMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVL 370 ++ L+ T + + +I D +P + EIL + + ++R L R ++ Sbjct: 342 LIQQLYVFTACQTNLSPAACVIE-DDKPHFLGVREILKRSVDKTKALLKRELEIRQAELE 400 Query: 371 KRLH 374 ++ H Sbjct: 401 QQWH 404 >UniRef50_O51066 DNA topoisomerase 4 subunit A n=20 Tax=Borrelia RepID=PARC_BORBU Length = 626 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 111/359 (30%), Positives = 181/359 (50%), Gaps = 34/359 (9%) Query: 18 YLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPH 77 +L YS YVI DRA+ + DG KPVQRRI++++ E+ F K A VG+ + KYHPH Sbjct: 11 FLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEMH---DGNFHKVANVVGNTM-KYHPH 66 Query: 78 GDSACYEAMVLMAQPFSYRYPLVDGQGNWG--APDDPKSFAAMRYTESRLSKYSELLLSE 135 GD++ YEA+V +A + ++ QGN+G DP S A RY E RL+ + +L Sbjct: 67 GDTSIYEALVNIAN----KDLFIEKQGNFGNLFTGDPAS--ASRYIECRLTPLAFDVL-- 118 Query: 136 LGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIAL 195 + + ++DG EP + PA++P IL+ G+ GIAVGMA I PHN E+ A Sbjct: 119 YSKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNEILNAV--- 175 Query: 196 IDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA-VWKKEDGAVVI 254 L + DI PD+PT + + Y +G G V +RA + ++ +VI Sbjct: 176 ---KSELLGESYDIY--PDFPTGGIVDVNE------YADGNGKVLVRAKIETIDEKTIVI 224 Query: 255 SALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNH 314 LP + ++ I +R K V + D + EN + +PR V +V+ Sbjct: 225 RELPFGETTESLISSIEKAIR-KNYIKVSSINDFT-AENVAIELSLPRG--VYASEVIEK 280 Query: 315 LFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRL 373 L+ T+ + S +NL ++ + P V + +++ + ++ L + K+L+++ Sbjct: 281 LYHYTNCQISISVNLLLLS-ERYPVVYTIKDLIKFHAAHLQKILKMELELQKSKILEKI 338 >UniRef50_UPI000194EBBC PREDICTED: similar to putative DNA gyrase subunit A; 1114-7603, partial n=1 Tax=Taeniopygia guttata RepID=UPI000194EBBC Length = 424 Score = 145 bits (367), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 118/372 (31%), Positives = 184/372 (49%), Gaps = 54/372 (14%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 R L ++ +L+Y+ YVI++RA+P I DGLKPVQRRI+++M L +F K A Sbjct: 44 RHQLRGMYQSWFLDYASYVILERAVPNIEDGLKPVQRRILHSMKLLD---DGRFNKVANI 100 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VG+ + ++HPHGD++ YEA+V + Q + LV+ QGNWG AA RY E+RLS Sbjct: 101 VGNTM-QFHPHGDASIYEALVQLGQ----KELLVETQGNWGNTLTGAGAAAGRYIEARLS 155 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 +++ D V N PK+ L GIAVG+++ I PHN Sbjct: 156 QFA-----------LDVVYN-------PKVTEWTL------SAEGIAVGLSSKILPHNFN 191 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR--GSVRMRA- 243 E+ AAI+ + TL PD+ T I SR Y +G G V++RA Sbjct: 192 EIIDAAISYLRGEPFTL--------YPDFFTGGSIDVSR------YNDGERGGVVKIRAK 237 Query: 244 VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 + K ++ + I+ +P+ + A ++E I K+ +R D+ T VIV Sbjct: 238 IEKIDNKTLAITEIPYGKTTATLIESIVKAQEAGKIK----IRSVVDNTAQTANVIVYLL 293 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLN 363 D+ ++ L+A TD E S N +I D +P + ++L + RD + + L Sbjct: 294 PGTSSDKTIDALYAFTDCEVSVSPNCCVIS-DNKPHFIGVSDVLRHNVDRTRDILGQELR 352 Query: 364 YRLEKVLKRLHI 375 +L +V ++LH Sbjct: 353 IQLGEVREQLHF 364 >UniRef50_B4D1N9 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1N9_9BACT Length = 745 Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 102/274 (37%), Positives = 155/274 (56%), Gaps = 29/274 (10%) Query: 16 NAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYH 75 N +L Y+ YVI+DRA+P I DGLKPVQRR+++ + ++ +F K A VG + K H Sbjct: 78 NWFLEYASYVILDRAVPHIDDGLKPVQRRVLHTLWDMD---DGRFHKVANVVGATM-KLH 133 Query: 76 PHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSE 135 PHGD++ A+V + Q R L++ QGN+G + AA RY E+RL+ ++ +L Sbjct: 134 PHGDASIEAALVAIGQ----RGWLIEPQGNYGNTLTGDAAAAARYIEARLTPFARDVL-- 187 Query: 136 LGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIAL 195 T W ++DG +EP LPA+ P +LL G GIAVG++T I PHN ++ +AAI Sbjct: 188 FNPKTTVWQQSYDGRTKEPVTLPAKFPIVLLEGAEGIAVGLSTKILPHNFNDLCRAAINH 247 Query: 196 IDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR--GSVRMRAVWKKEDGAV- 252 + Q KT ++L PD+PT + Y +G G V++RA ++ +V Sbjct: 248 L-QGKTF--RIL-----PDFPTGGTGDFTD------YNDGERGGKVKVRARIEEHSKSVL 293 Query: 253 VISALPHQVSGARVLEQI-AAQMRNK-KLPMVDD 284 I+ LP+ V+ ++E I AA + K K+ VDD Sbjct: 294 CITELPYGVTTESLIESILAANAKGKIKIKHVDD 327 >UniRef50_Q1NV80 DNA gyrase/topoisomerase IV, subunit A n=4 Tax=Deltaproteobacteria RepID=Q1NV80_9DELT Length = 711 Score = 143 bits (360), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 139/485 (28%), Positives = 234/485 (48%), Gaps = 75/485 (15%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 LH + +L+Y+ YVI +RA+P + DGLKPVQRRI+ + + +F K A VG+ Sbjct: 58 LHRLFDENFLDYTSYVIRERAIPDLADGLKPVQRRILQTLHNMD---DGRFHKVANVVGE 114 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 + K HPHGD++ + A+V +A + L+D QGN+G +A RY E RLS + Sbjct: 115 TM-KLHPHGDASIFSALVNLAN----KGYLIDRQGNFGNVHTGDGASAPRYIECRLSPLA 169 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 + + +++ ++DG ++EP LPARLP +LL G GIAVGMAT I PHN E+ Sbjct: 170 RETM--FNKELTEFIDSYDGRMKEPVSLPARLPLLLLQGADGIAVGMATKIMPHNFGELL 227 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA-VWKKE 248 A+ ++ + L PD+P + S YE+G G +R RA + ++ Sbjct: 228 TASKQILREEPFEL--------FPDFPQGGLLDASG------YEDGNGRLRCRARIETRD 273 Query: 249 DGAVVISALPHQVSGARVLEQIAAQMRNKKLPM--VDDLRDESDHENPTRLVIVPRSNRV 306 D +VI +P+ + ++E + R K + +DD E D E +L + Sbjct: 274 DKTIVIRDIPYGTTTQSLIESVEKAARAGKFKILSIDDYTAE-DVEIEIKL-----ARGF 327 Query: 307 DMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT--------- 357 ++ + L+A TD E N +I + PA+ + E+L E R Sbjct: 328 KAEETIKALYAFTDCEIPISPNFTVI-REQTPAIMTVSEVLRENTARLRQLLKKELELDL 386 Query: 358 --VRRRLNYRL-------EKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFG 408 +R +L RL E++ K++ L V ID+ + +P A + R Sbjct: 387 ARLREKLQARLLEQIFIEERLYKQIEECPSLAVVLTTIDKAL-------KPFAAELVR-P 438 Query: 409 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 ++ E +LE++++ +++ ++E+++ +++GI RK ++K L AD Sbjct: 439 VSREDLERLLEIRIKRISRY----------DIERQKKEIKGI----RKDIVAVEKNL-AD 483 Query: 469 AQAYG 473 AY Sbjct: 484 LTAYA 488 >UniRef50_A8V037 DNA gyrase, A subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V037_9AQUI Length = 331 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 67/113 (59%), Positives = 87/113 (76%), Gaps = 3/113 (2%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 + E ++AYL+Y+M VI+ RA+P + DGLKPVQRRI+YAM E + + +KKSARTVG+ Sbjct: 9 IEEEVKSAYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEENMYPNRPYKKSARTVGN 68 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPD-DPKSFAAMRYT 121 V+ KYHPHGDS+ Y+A+V MAQ F+ RYPLV GQGN+G+ D DP AAMRY Sbjct: 69 VIAKYHPHGDSSVYDALVRMAQDFTLRYPLVQGQGNFGSIDGDPP--AAMRYC 119 >UniRef50_C4PNH1 DNA gyrase subunit A n=8 Tax=Chlamydia trachomatis RepID=C4PNH1_CHLTZ Length = 490 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 136/245 (55%), Gaps = 32/245 (13%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 MS++++ H FT+ Y+ YVI++RA+P + DGLKPVQRR+++ + + K Sbjct: 1 MSNLSDLFKTH-FTQ-----YASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKM 51 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 K A G + HPHGD+ EA+V++A + L++ QGN+G P AA RY Sbjct: 52 HKVANIAGRTMA-LHPHGDAPIVEALVVLAN----KGFLIETQGNFGNPLTGDPHAAARY 106 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 E+RLS ++ +L + ++DG QEP +L A++P +LL+G GIAVGM T I Sbjct: 107 IEARLSPLAKEVL--FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKI 164 Query: 181 PPHNLREVAQAAIALI-DQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSV 239 PHN ++ +A IA++ DQP + L PD+P + S Y++G GS+ Sbjct: 165 FPHNFCDLLEAQIAILNDQPFSLL---------PDFPPGGTMDASD------YQDGLGSI 209 Query: 240 RMRAV 244 +RA Sbjct: 210 VLRAT 214 >UniRef50_Q04PE8 DNA topoisomerase (ATP-hydrolyzing), subunit A n=6 Tax=Leptospira RepID=Q04PE8_LEPBJ Length = 462 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 125/473 (26%), Positives = 210/473 (44%), Gaps = 77/473 (16%) Query: 21 YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDS 80 YS YV RA+P DGLKPVQRRI++AM +A ++ K+ + G +G YHPHGD Sbjct: 29 YSRYVCDSRAIPHEIDGLKPVQRRILWAM--WNSDARNRYTKTVKVAGLAMG-YHPHGDK 85 Query: 81 ACYEAMVLMAQPFSY--RYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQ 138 + +A+ MAQ F++ PLV G+G +G DP + A+ RYTE +LS + + L Sbjct: 86 SIQDALSQMAQDFTFANNIPLVSGEGTFGDVLDPSAIASPRYTEVKLSDFVKDLGFFESL 145 Query: 139 GTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQ 198 D+V N+D T EP ++P +LLN GIA G IP H L ++ ++ I + Sbjct: 146 PDIDYVKNYDETEDEPIHFVGKVPIVLLNNIQGIATGFRCFIPGHRLADIVKSQINYLKT 205 Query: 199 PKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGAVVISALP 258 K ++ Y++ G V+M E G + +S Sbjct: 206 KKP------------------------LSLKPWYKDFNGEVKMAET---ETGNITMSTTF 238 Query: 259 HQVSGARVLEQIAAQM---RNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMD------ 309 +L + M R K + ++DD+ + D + ++ R+++ Sbjct: 239 AFKWEGDILYLTDSPMNWNREKVISLLDDILERKDSWLKEYVDYSSQTFRIELQYKKGEK 298 Query: 310 ----QVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLL--EILSEWLVFRRDTVRRRLN 363 ++M LF D++ + +N+I DG+ +KN EI+ + FR+ + RR Sbjct: 299 PSQKEIM-ALFNKEDIQ---TLAMNVITYDGK--LKNFKPEEIIKRFCDFRKTHLIRR-- 350 Query: 364 YRLEKVLKRLHILE-------GLLVAFLN---IDEVIEIIRNEDEPKPALMSRFGLTETQ 413 KRL LE L+ F+ ++VI I +D S+F E Sbjct: 351 ------FKRLSGLEEEKIERNSELIRFIKEKWNEKVIGIKSKKDFEDKLKASKFKYFEWL 404 Query: 414 AEA-ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKEL 465 + + + + + K EE I + + + QG++ ++K+ + + EL Sbjct: 405 STIPVYRMTIEEVKKCEEAIIEAKTT-----LARYQGLVKEDKKLTDYMITEL 452 >UniRef50_C3GSY0 DNA gyrase subunit A n=3 Tax=Bacillus thuringiensis RepID=C3GSY0_BACTU Length = 745 Score = 125 bits (314), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 103/382 (26%), Positives = 180/382 (47%), Gaps = 25/382 (6%) Query: 17 AYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHP 76 Y++Y+ V+ +RAL I DGLKPVQR +Y M AK + VG + KYHP Sbjct: 51 GYIDYAREVLTNRALEDIRDGLKPVQRYALYWM----FKEKAKDMIKSEQVGAGVLKYHP 106 Query: 77 HGDSACYEAMVLMAQPFSYRY-PLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSE 135 H + YE++ M + Y PL+ G+G G S AA RYT + + ++ + + Sbjct: 107 HNADSAYESLTKMVESNGTFYVPLLIGKGELGKKFSNGSPAASRYTSVKFHENAKEMFTA 166 Query: 136 LGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIAL 195 + D V NFD T + P++LPA +P IL+ GIAVG +T P ++V Sbjct: 167 MDG--IDMVWNFDDTERVPEVLPASVPYILMKYADGIAVGFSTKSPSFLPQDVTNLVREY 224 Query: 196 IDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGAVVIS 255 I K + + PD+ T I + E+ K+ + G+GS R + +V++ Sbjct: 225 IRDGKCS------TMIVPDFSTGGFISYTEKELEKLMKTGKGSFMTRGKVFIDGKNIVVT 278 Query: 256 ALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHL 315 +P V+ +++++I P + D + + + NRV +V+ L Sbjct: 279 EVPQGVTVEKIMKEIEKAEIQGITP--NGYSDLTGKDGCYFEITCRAKNRV--QEVLMEL 334 Query: 316 FATTDLEKSYRINLNMIGLDGRP-AVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLH 374 + T L+K + N N++ ++ + + + I+ W+ +RR + R+ L K+++ Sbjct: 335 YTKTSLQK--KFNSNLLAVESKKLVITGVWGIIDRWVKWRRKVLTRQTRLDLAKLVESAK 392 Query: 375 ILEGLLVAFLNI----DEVIEI 392 +G + L I DE++E+ Sbjct: 393 YTKG-FIDLLAIEGARDEIVEL 413 >UniRef50_Q252N7 DNA gyrase subunit A n=9 Tax=Chlamydiales RepID=Q252N7_CHLFF Length = 479 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 90/254 (35%), Positives = 139/254 (54%), Gaps = 30/254 (11%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 M D+++ H +++Y+ YVI++RA+P I DGLKPVQRR+++ + + K Sbjct: 1 MQDVSDLFKTH------FMHYASYVILERAIPHILDGLKPVQRRLLWTLFRMD---DGKM 51 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 K A G + HPHGD+ EA+V++A + L+D QGN+G P AA RY Sbjct: 52 HKVANIAGRTMA-LHPHGDAPIVEALVVLAN----KGYLIDTQGNFGNPLTGDPHAAARY 106 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 E+RLS ++ +L + ++DG +EP +LPA+LP +LL+G GIAVGM T I Sbjct: 107 IEARLSPLAKDIL--FNTDLMSFHDSYDGREKEPDILPAKLPLLLLHGVEGIAVGMTTKI 164 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PHNL E+ +A IA+++ TL PD+ + + S Y++G GS+ Sbjct: 165 FPHNLYELIEAQIAILNNRTFTL--------LPDFYSGGVMDASE------YQDGLGSIT 210 Query: 241 MRAVWKKEDGAVVI 254 +RA + D +I Sbjct: 211 IRASIQIVDSKTLI 224 >UniRef50_A7C399 DNA topoisomerase IV, A subunit n=1 Tax=Beggiatoa sp. PS RepID=A7C399_9GAMM Length = 173 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 65/162 (40%), Positives = 106/162 (65%), Gaps = 4/162 (2%) Query: 584 HMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVI-EDASDM 642 H+L+ + L+ASDAGYGF+ DL +N+AGKA++TLP +A ++ P+ I E ++ Sbjct: 2 HVLLGDAEVSFLLASDAGYGFLINLEDLYTKNKAGKAILTLPPDAKILRPLPIAEPETEY 61 Query: 643 LLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQ-STLTIH 701 +T AG + + PV +LP+L KGKG K++ IP A++ + ++ + L +L P+ LT++ Sbjct: 62 YAVVTSAGYLSIVPVLELPRLPKGKGVKLLGIP-AKSKKDKESVVALTLLNPEIDILTLY 120 Query: 702 VGKRKIKLRPEELQKVTGERGRRG-TLMRGLQRIDRVEIDSP 742 VGKR + L+ +++ T ER RRG L RG Q++DR+E+ P Sbjct: 121 VGKRHLTLKERDIEAYTMERSRRGQKLPRGFQKVDRIEVIHP 162 >UniRef50_Q76Y98 Gp52 topoisomerase II medium subunit n=1 Tax=Aeromonas phage Aeh1 RepID=Q76Y98_9CAUD Length = 438 Score = 118 bits (296), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 110/438 (25%), Positives = 214/438 (48%), Gaps = 51/438 (11%) Query: 21 YSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY-HPHGD 79 ++MY I +RALP + DGLKPVQR I++++ + NA +FKK+A G V+ +Y + HG+ Sbjct: 19 FAMYTIEERALPSMVDGLKPVQRYILFSVLK---NAGREFKKNAAVAG-VISEYGYNHGE 74 Query: 80 SACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELL--LSELG 137 A +A LMA ++ +P++ G+GN+G + AA S+ ++ + + L Sbjct: 75 MAAMDAACLMASTWNNNFPVIQGRGNFGCRAVQEGAAARYIFCSKHERFESMFKDMELLE 134 Query: 138 QGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALI- 196 + TA DG++ LP LP +LLNG +GIA G AT I PH+++ VA+ ++ Sbjct: 135 ESTA------DGSILPRYYLPI-LPTVLLNGVSGIATGFATKIMPHSVQSVAKCVEQVLK 187 Query: 197 ----DQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYE-NGRGSVRMRAVWKKEDGA 251 D+P+ + G E E T ++ YE +G+ + + + K D Sbjct: 188 SGKCDEPEIQFPKFF----GKILSIEGE--TQSWKVEGDYELSGKTKLIINELPPKYDRL 241 Query: 252 VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESD--HENPTRLVIVPRSNRVDMD 309 ++ L V +++ ++M++++ L+ + D HEN ++ + Sbjct: 242 KYVTHLNKLVETDKIVGYDESKMKDREFCFKVTLKRDFDVSHENIIKV--------FKLS 293 Query: 310 QVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKV 369 Q ++ D N N+ D N +++ +++ FR + +++R++ + Sbjct: 294 QNVSQYIRVIDQ------NGNLKPYD------NASDLIVDFVNFRFNVLQKRIDNAIIAT 341 Query: 370 LKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPAL--MSRFGLTETQAEAILELKLRHLAK 427 ++L + V F+ + +I+ N K + ++ F +T A+ ++++ L H+ + Sbjct: 342 REKLDFAQA-KVDFIKLVLADKIVFNRQTRKQVIEQINAFDELKTYADQLVQMNLYHMTE 400 Query: 428 LEEMKIRGEQSELEKERD 445 E K+ + +EL+KE D Sbjct: 401 DEVAKLEKQVAELQKEHD 418 >UniRef50_P07065 DNA topoisomerase medium subunit n=8 Tax=T4-like viruses RepID=TOP5_BPT4 Length = 442 Score = 112 bits (279), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 81/254 (31%), Positives = 126/254 (49%), Gaps = 20/254 (7%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 L +N L Y+MY + +RA+P + DG KPVQR ++ +L KF K A G Sbjct: 8 LKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASIAGG 67 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK-- 127 V + HG+++ +A LMA ++ +PL+DGQGN+G+ K+ AA RY +R+SK Sbjct: 68 VADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQKA-AASRYIFARVSKNF 126 Query: 128 ---YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 Y + + + Q P F LP +P +LLNG +GIA G AT I PH+ Sbjct: 127 YNVYKDTEYAPVHQDKEHIPPAF--------YLPI-IPTVLLNGVSGIATGYATYILPHS 177 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYE-NGRGSVRMRA 243 + V +A + + K T + V+ P++ E I + EIR Y+ R + + Sbjct: 178 VSSVKKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIRGTYKFTSRTQMHITE 233 Query: 244 VWKKEDGAVVISAL 257 + K D +S + Sbjct: 234 IPYKYDRETYVSKI 247 >UniRef50_C4MZZ9 Gp52 topoisomerase II, medium subunit n=2 Tax=unclassified T4-like viruses RepID=C4MZZ9_9CAUD Length = 459 Score = 108 bits (270), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 91/363 (25%), Positives = 173/363 (47%), Gaps = 32/363 (8%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 L +N L Y+MY + +RA+P + DG KPVQR +V ++ KF K A G Sbjct: 25 LKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVARCLDMARGNKEKFHKLASIAGG 84 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 V + HG+ + EA LMA ++ +PL+DGQGN+G+ K+ AA RY +R+ Sbjct: 85 VADLGYHHGEGSAQEAGALMANTWNNNFPLLDGQGNFGSRLVQKA-AASRYIFARIGTNF 143 Query: 130 ELLLSELGQGTADWVP-NFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 + + ++ P + D + P +P +LLNG +GIA G AT+I PH+ V Sbjct: 144 AKVYKD-----TEYAPVHADVEHKPPAFYLPIIPTVLLNGISGIATGYATNILPHSFDSV 198 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK-K 247 +A + ++ + + T + V P++ R ++ +I GS +R +K Sbjct: 199 KKAVLQVLQEKRVTKPK----VAYPEF---------RGDVVEI---EPGSYELRGTYKFT 242 Query: 248 EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL---VIVPRSN 304 + I+ +P++ + ++ + +K DD DE+ ++ +P Sbjct: 243 SRTQMHITEIPYKYDRETYVAKVLDPLEDKGYITYDDDCDENGFGFKVKIRKEYELPTEE 302 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAV-KNLLEILSEWLVFRRDTVRRRLN 363 +++M L + NL +I G+ V ++++E++ +++ R+ V++R++ Sbjct: 303 NKKHEKIMKDF----GLIERRSQNLTVINEKGKLKVYEDVVELIRDFVEVRKTFVQKRID 358 Query: 364 YRL 366 ++ Sbjct: 359 GKI 361 >UniRef50_UPI00016B2480 DNA gyrase subunit A n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B2480 Length = 417 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/284 (25%), Positives = 133/284 (46%), Gaps = 24/284 (8%) Query: 394 RNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILAS 453 + ++E + +L++RFGL+E QA+AIL ++LR L LE I E EL ++L+GILA Sbjct: 1 KTQEEAEKSLIARFGLSEIQAKAILAMQLRRLTGLEREAIENELRELLALIEKLKGILAD 60 Query: 454 ERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSA 513 E+++ N++K EL + YGD RRS + E K S+ +++P E ++L+ +++ Sbjct: 61 EQEILNIIKNELIEMKEKYGDQRRSKMINHELGK-FSDEELIPEEDSVVLLTSENYIKRT 119 Query: 514 KGHDIDAP--------GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA-- 563 D G+ K D + + ++ ++F + GR + + +P+A Sbjct: 120 LASDYRKQNRGGKGKRGMTTKETDVIEHMIPAGTHDWLLFFTNRGRVFRLKAYEVPAASL 179 Query: 564 RGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVAR-------NR 616 + +G L L P + ++ D A D GY F+ T + + N Sbjct: 180 QAKGVAAVNLLQLQPEEKITAIIKFEKD-----AKDDGYLFMATVKGTIKKTPVKDYANI 234 Query: 617 AGKALITLP-ENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD 659 LI + ++ + + +D +L T AG+ + F D Sbjct: 235 RTNGLIAIKLDDGDELRWIKRSSGNDDILISTSAGQAIRFNEKD 278 >UniRef50_Q6WHM1 Topoisomerase II small subunit n=1 Tax=Vibrio phage KVP40 RepID=Q6WHM1_BPKV4 Length = 428 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 91/366 (24%), Positives = 162/366 (44%), Gaps = 55/366 (15%) Query: 19 LNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHG 78 L Y+MY I +RAL DGLKPVQR ++Y + + +AS F K A V + HG Sbjct: 14 LEYAMYTIENRALANGIDGLKPVQRFVLYNVIK---DASTSFDKVAALGSSVSKIGYNHG 70 Query: 79 DSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELG- 137 +++ +A+ LMA + P+V G+GN+G+ +S A+ RY ++L +L ++ Sbjct: 71 ETSAQDALALMAAEWQNNVPIVQGRGNFGSRMVKES-ASARYVYAKLHDNFDLYFKDIHL 129 Query: 138 ---QGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIA 194 + VP P+ LP IL+NG GIA G A +I PH+ V +A + Sbjct: 130 SPEHKDLEHVP--------PQFYVPVLPMILMNGVQGIATGFACNILPHDPEWVKKAVLE 181 Query: 195 L-----IDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED 249 I +P + ++ ++ A+I G+V + + Sbjct: 182 YLAGKEISEPVVKFPEFYGKIEKLEHNKYAQI---------------GTVEISGL----- 221 Query: 250 GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMD 309 V++ +P A+ + ++ + K + DE+ R V R ++ + Sbjct: 222 -TAVVTEIPTGFDHAKYIIELDKLVEKGK---ISSYVDETSETFQFR-VRFKRGAKMTEE 276 Query: 310 QVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEI--LSEWLV-FRRDTVRRRLNYRL 366 V+ T L+ ++ N+N+I D +++ ++ L +W V FR + +R+ Sbjct: 277 SVIK----TLKLQSTFTQNINVI--DENYQIRHFDDVRELVKWFVDFRMSFLPKRIQDST 330 Query: 367 EKVLKR 372 E+ KR Sbjct: 331 ERTEKR 336 >UniRef50_Q6U961 Topoisomerase II medium subunit n=3 Tax=unclassified T4-like viruses RepID=Q6U961_9CAUD Length = 555 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 68/237 (28%), Positives = 116/237 (48%), Gaps = 32/237 (13%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 +L + L ++MY + +RA+P + DGLKPVQR +Y E +KF K A G Sbjct: 114 SLQSIINHEALEFAMYTVEERAIPSLIDGLKPVQRFFMYRALEYAKQNRSKFNKVAALAG 173 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK- 127 V + HG+ + A L+A ++ P+++G GN+G+ ++ AA RY R+ + Sbjct: 174 GVSEAGYHHGEGSAAGAGQLIANTWNNNIPILEGDGNFGSRMVQQA-AAPRYVFCRVHQN 232 Query: 128 ----YSELLLSELGQGTADWVPNFDGTLQEPKMLPAR-----LPNILLNGTTGIAVGMAT 178 Y ++ L+ + EP+ LP R +P +L NG GIA G AT Sbjct: 233 FWDIYRDIELAPVH--------------PEPEHLPPRYYLPVIPMVLANGVKGIATGYAT 278 Query: 179 DIPPHNLREVAQAAIALID-QPKTTLDQLLDIVQGPDYPTEAEIITSRA-EIRKIYE 233 +I PH+ + + + A I+ +P L+ VQ P++ ++++ E+ +YE Sbjct: 279 NIFPHSYKSLIKCTKAAIEGKPIPRLE-----VQFPEFSGVIRRVSAKTIEVEGLYE 330 >UniRef50_Q56C44 Gp52 DNA topoisomerase subunit n=1 Tax=Enterobacteria phage RB43 RepID=Q56C44_9CAUD Length = 387 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 96/202 (47%), Gaps = 14/202 (6%) Query: 19 LNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHG 78 L +++Y I RA+P + DG KPV R V++ ++ G + F+K A G V + HG Sbjct: 14 LTFALYTIYSRAIPHLVDGFKPVHRFFVHSAAKGG----SGFQKVASIAGGVAIYGYHHG 69 Query: 79 DSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQ 138 +++ EA+ LMA + PL D G +G+ K A RY +LS L + Sbjct: 70 ETSVEEALSLMAAHWCNNIPLFDRDGFFGSRLVKKP-GAPRYIYCKLSP----LFKAIYM 124 Query: 139 GTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQ 198 +P+ D P +P +L+NG GIA G AT+IPPH+ V ++ ++ Sbjct: 125 DEDLTIPHEDPEHLPPAYYLPIIPMVLVNGFRGIAKGYATNIPPHDPVSVLNGCVSYLNG 184 Query: 199 PKTTLDQLL-----DIVQGPDY 215 TLD DIV G Y Sbjct: 185 KDFTLDLKYPQFKGDIVDGTMY 206 >UniRef50_P27570 DNA topoisomerase 2 n=15 Tax=Trypanosomatidae RepID=TOP2_CRIFA Length = 1239 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 105/193 (54%), Gaps = 7/193 (3%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 L + +F +++++ V RA+P DGLKP QR+I++AM + + +AK + + + Sbjct: 663 LTIGDFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWAMLKRHSSEAAKVAQLSGYI 721 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFS--YRYPLVDGQGNWGAPDD-PKSFAAMRYTESR 124 +V +H HG+++ E +V MAQ F+ L+ +G +G+ AA RY ++ Sbjct: 722 SEV-SSFH-HGEASLQETIVKMAQNFTGGNNINLLVPEGQFGSRQQLGNDHAAPRYIFTK 779 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 LS+++ LL E D++ +GT+ EP LP +L NG GI G AT+IP + Sbjct: 780 LSRFARLLFPEDDDPLLDYIDE-EGTMVEPNHYVPILPLLLCNGAVGIGFGFATNIPSFH 838 Query: 185 LREVAQAAIALID 197 +V+ A A+I+ Sbjct: 839 PLDVSAAVRAMIN 851 >UniRef50_P72065 Mxe gyrA intein (Fragment) n=1 Tax=Mycobacterium xenopi RepID=GYRA_MYCXE Length = 327 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 38/61 (62%), Positives = 49/61 (80%), Gaps = 3/61 (4%) Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAP-DDPKSFAAMRY 120 KSAR+V + +G YHPHGD++ Y+ +V MAQP+S RYPLVDGQGN+G+P +DP AAMRY Sbjct: 8 KSARSVAETMGNYHPHGDASIYDTLVRMAQPWSMRYPLVDGQGNFGSPGNDPP--AAMRY 65 Query: 121 T 121 Sbjct: 66 C 66 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 35/64 (54%), Positives = 50/64 (78%) Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+ L+ + +L E+ + T D++PN+DG +QEP +LP+R PN+L NG+ GIAVGMAT+I Sbjct: 264 TEAPLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 323 Query: 181 PPHN 184 PPHN Sbjct: 324 PPHN 327 >UniRef50_A7ANB1 DNA topoisomerase 2 n=3 Tax=Piroplasmida RepID=A7ANB1_BABBO Length = 1437 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 120/517 (23%), Positives = 219/517 (42%), Gaps = 76/517 (14%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 ++L +F + +S+Y +R++P + DG KP QR++++ + L K + Sbjct: 658 KKLRYTDFINKELIQFSIY-DTERSIPSVVDGWKPGQRKVLFGCLKRNLVGECKVAQLTG 716 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGA-PDDPKSFAAMRYTE 122 V + YH HG+++ + ++ MAQ F S +++ G +G+ + K +A RY Sbjct: 717 YVAE-HSAYH-HGEASLQQTIINMAQNFVGSNNINVLEPCGQFGSRKEGGKDASAARYIF 774 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 ++L+ + L+ E ++ N +G EP +P +L+NG+ GI G ++ IP Sbjct: 775 TKLNPITRLIFVEEDDNILEY-QNEEGQTIEPMYYIPTIPMVLVNGSEGIGTGFSSQIPN 833 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM- 241 +N + +ID K L+ ++ P P + +I N +G Sbjct: 834 YN-------PLDIIDNLKRYLN---NVDMKPMVPWYHKFTG------EIEPNDKGGFDCL 877 Query: 242 -RAVWKKEDGAVVISALP--HQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 W E+G + I+ LP RV + Q N K P++ D S HE+ + Sbjct: 878 GNYQWLDENGLLEITELPIRKWTHDYRVFLESLEQGVNGKEPLILGFVDNSTHESVHFTL 937 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRI-----NLNMIGLDGRPAVK---NLLEILSEW 350 V N +++V+N ++K +++ NM D +K N LEI+ ++ Sbjct: 938 NV---NPECIEEVINE-----GVDKVFKLRTSIATTNMTLFDANKKLKRYSNELEIIRDF 989 Query: 351 LVFRRDTVRRRLNY----------RLEKVLKRLH-ILEGLLVAF-------------LNI 386 R T +R Y R+ ++ +H ++ LV F L Sbjct: 990 AAVRLATYEKRKTYLINNLKLLLRRISNQVRFIHMVVNEELVLFKKAKATLVAELRDLGF 1049 Query: 387 DEVIEIIRNEDEP----KPALMSRFGLTETQAEA----ILELKLRHLAKLEEMKIRGEQS 438 D +I++ +EP +P SR T+ A +L + L L + K+ E + Sbjct: 1050 DSNTDILKGSEEPSTLNEPVTPSRRSGTQDAPGADYNYLLNMPLWSLTLEQVQKLNEEHA 1109 Query: 439 ELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 + E + L A++ M++L K E+ A AY D Sbjct: 1110 QKENQLRILLETTATDMWMDDLNKVEV-AIKMAYQQD 1145 >UniRef50_B9PK68 DNA topoisomerase 2 n=3 Tax=Toxoplasma gondii RepID=B9PK68_TOXGO Length = 1688 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 104/407 (25%), Positives = 171/407 (42%), Gaps = 43/407 (10%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 A L+ +F + +S Y +R++P + DG KP QR++++A + + K + A Sbjct: 772 ASSLSYSDFVNKELILFSRY-DTERSIPQLVDGWKPGQRKVLFACIKKNMKHELKVAQLA 830 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGA-PDDPKSFAAMRYT 121 V +V YH HG+++ + +V MAQ F S ++ G +G+ + K +A RY Sbjct: 831 GYVSEV-SAYH-HGEASLQQTIVTMAQRFVGSNNLNFLEPVGQFGSRKEGGKDASAARYI 888 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 +RL+ Y+ L+ E ++ +G EPKM +P +L+NG+ GI G ++ +P Sbjct: 889 FTRLAFYTRLVFHEADDPILEYEYE-EGQRIEPKMYVPVIPTVLINGSEGIGTGWSSFVP 947 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYEN--GRGSV 239 +N R+V + ID + P Y R +I EN G G Sbjct: 948 NYNPRDVIENLRRYIDGEEMQR-------MTPWY---------RGFRGRIEENAAGTGFE 991 Query: 240 RMRAVWKKEDGAVVISALPHQVSGARVLEQIAAQM--RNKKLPMVDDLRDESDHENPTRL 297 + V + + + I+ LP + E + + K+ ++ D RD S HE Sbjct: 992 TIGLVRRCGEDSYEITELPIKRWTQDYKEWLEENLPTAEKRDTLIADYRDCSSHEEIHFT 1051 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRI-------NLNMIGLDGR-PAVKNLLEILSE 349 V V LEK +++ NL + GR N LEI+ E Sbjct: 1052 VKVGEERVERP--------EREGLEKYFKLKSSLSITNLTLFDPHGRVQRYANELEIIKE 1103 Query: 350 WLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE 396 + R + RR Y L + K IL L L + II N+ Sbjct: 1104 FAPIRLEFYHRRKAYCLAMLEKARRILSNRLRFILAVVNGELIINNK 1150 >UniRef50_C9S837 DNA topoisomerase 2 n=2 Tax=Sordariomycetes RepID=C9S837_VERA1 Length = 1688 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 91/380 (23%), Positives = 165/380 (43%), Gaps = 46/380 (12%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 + +F + +SM M R++P + DGLKP QR++++A + L K + A V Sbjct: 732 ITYDDFVNRELILFSMADNM-RSIPSVLDGLKPGQRKVMFACFKRNLTKDQKVVELAGYV 790 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPDDPKSFAAM-RYTESR 124 + YH HG+ + + ++ +AQ F S ++ GN+G+ S AA RY +R Sbjct: 791 SEKAA-YH-HGEMSLQQTIIGLAQNFVGSNNVNCLEPSGNFGSRLAGGSDAASPRYIHTR 848 Query: 125 LSKYSELLLSELGQGTADWVPNF-----DGTLQEPKMLPARLPNILLNGTTGIAVGMATD 179 LS ++ + S L + PN DG EPK+ +P +L NG GI G +T Sbjct: 849 LSPFARKIFSVLDE------PNLEVQMEDGKPIEPKVYAPIIPMVLCNGADGIGTGWSTS 902 Query: 180 IPPHNLREVAQAA---IALID------QPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRK 230 IP ++ E+ +A + +D +P T+ +G P E + R + Sbjct: 903 IPNYHPMEIVRAIKRRMGRLDSDDTEGKPFETMMPWFRGWKGTPEPAEKD----RYKFNG 958 Query: 231 IYENGRGSVRMRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLP-MVDDLRDES 289 IYE + G ++I LP ++ ++ + K P + D ++ + Sbjct: 959 IYETDDKT-----------GEIIIKELPIRMWTDDFKAKLEEVISGAKGPAWIKDYKEFN 1007 Query: 290 DHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK---NLLEI 346 DH+N ++ + + D+ + + L K + N++ D ++ + +I Sbjct: 1008 DHKNVNFVIQLDEKHYKDIHKTHEGIMDRFKLNKQVATS-NLVAFDSTGRIRKYEKVEDI 1066 Query: 347 LSEWLVFRRDTVRRRLNYRL 366 L E+ V+R D R + L Sbjct: 1067 LEEFYVYRLDMYSARKKHWL 1086 >UniRef50_P41001 DNA topoisomerase 2 n=10 Tax=Eukaryota RepID=TOP2_PLAFK Length = 1398 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 132/292 (45%), Gaps = 27/292 (9%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 L+ ++F + YS Y +R++P I DG KP QR+++Y + L K A+ V Sbjct: 717 LSYYDFVNKELIYYSRYD-TERSIPNIMDGWKPGQRKVLYGCFKRNLRNECKV---AQLV 772 Query: 68 GDVL--GKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGA-PDDPKSFAAMRYTE 122 G + YH HG+S+ + ++ MAQ F S ++ G +G+ + K +A RY Sbjct: 773 GYIAEHSAYHHHGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARYIF 832 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 ++L+ + + +E ++ N +G EP+ +P IL+NG GI G ++ IP Sbjct: 833 TKLASSTRSIFNEYDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFIPN 891 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 +N +++ ID K +++ I P Y R E NG+ Sbjct: 892 YNYKDI-------IDNIKRYINKEPLIPMVPWYKD----FKGRIE-----SNGKTGYETI 935 Query: 243 AVWKKEDGAVV-ISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHEN 293 + K D + I+ LP + E + + ++K ++ D D S HE+ Sbjct: 936 GIINKIDNDTLEITELPIKKWTQDYKEFLEELLTDEKHQLILDYIDNSSHED 987 >UniRef50_A5E7X7 DNA topoisomerase 2 n=4 Tax=Saccharomycetaceae RepID=A5E7X7_LODEL Length = 1492 Score = 80.1 bits (196), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 93/359 (25%), Positives = 162/359 (45%), Gaps = 42/359 (11%) Query: 29 RALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVL 88 R++P + DGLKP QR+I+Y + L K + A V DV YH HG+ + + ++ Sbjct: 769 RSIPSMLDGLKPGQRKILYGCFKRKLKNEIKVAQLAAYVADV-SSYH-HGEQSLVQTIIA 826 Query: 89 MAQPF--SYRYPLVDGQGNWGA-PDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVP 145 MAQ F S L+ G +G+ K AA RY + L++ + + +E +++ Sbjct: 827 MAQNFVGSNNINLLKPNGAFGSRATGGKDAAAARYIFTELNEITRTIFNEADDPLLNYLQ 886 Query: 146 NFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN-LREVAQAAIALIDQPKTTLD 204 + + T++ LP LP IL+NG GI G +T+IP +N L VA + +P ++ Sbjct: 887 DDESTVEPQWYLPV-LPMILVNGADGIGTGWSTNIPSYNPLDIVANLRRLMRGEPMEEMN 945 Query: 205 QLLDIVQGPDYPTEAEIITSRAEIRKIY-ENGRGSVRMRAVWKKEDGAVVISALPHQVSG 263 G +I K+ + + S R+ + +D + IS +P + Sbjct: 946 PWYKGWYG--------------DIEKVGPQKFKISGRIEQI---DDNTIEISEVPVKTWT 988 Query: 264 ARVLEQIAAQMRNKK-LPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLE 322 V E + A + N+K + + D+ E H R V+ D M + LE Sbjct: 989 NTVKEFLLAGLGNEKTVQWIKDM--EEQHTTSIRFVVKLS------DAEMAKALSVGLLE 1040 Query: 323 KSYRINL----NMIGLDGRPAVK---NLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLH 374 K ++ NM+ D +K ++L+I+ ++ R + +R N+ LE +L+ H Sbjct: 1041 KFKLVSTISLANMVAFDPHGRIKKYLDVLDIVKDFYFVRLEYYEKRKNHMLE-ILQHKH 1098 >UniRef50_D2UZM0 DNA topoisomerase II n=1 Tax=Naegleria gruberi RepID=D2UZM0_NAEGR Length = 1457 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 94/371 (25%), Positives = 167/371 (45%), Gaps = 31/371 (8%) Query: 29 RALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVL 88 R++P I DGLKP QR+I+++ + L K + A V + YH HG+ + +V Sbjct: 714 RSIPSIVDGLKPGQRKILFSCFKRNLKKEIKVAQLAGYVSE-QSAYH-HGEDSLNGTVVN 771 Query: 89 MAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVP 145 MAQ F S L+ G +G K A+ RY ++LS+ + + + +++ Sbjct: 772 MAQNFVGSNNINLLYPGGMFGTRLQGGKDSASPRYIFTKLSEITRYIFPKADDPVLEYLD 831 Query: 146 NFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQ 205 + DG EP+ LP +L+NG+ GI +T+I +N ++ + ALI + + Sbjct: 832 D-DGQSIEPRFYVPILPMVLVNGSEGIGTAWSTNIETYNPVDIVEGLKALIKGEEAK--E 888 Query: 206 LLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGAVVISALPHQVSGAR 265 +G D E + ++ + + + E K +D + IS LP ++ Sbjct: 889 FHPWYKGFDGIIE-RLAPTKWQTKGVIE------------KIDDNTLDISELPIRIWTES 935 Query: 266 VLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSY 325 E++ M ++ VDD R+ +H + T V +++ D L+ L K + Sbjct: 936 FKERLEKMMEAQQ---VDDFRE--NHTDVTVSFTVKMTDKQMKDAEDAGLYDYFKLFKKF 990 Query: 326 RINLNMIGLDGRPAVK---NLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVA 382 + NM+ +K +L+IL E+ R +R Y LEK+ K L IL + Sbjct: 991 STS-NMVLFSEEGGIKEYETVLDILKEFYPIRLKFYGKRKEYMLEKMKKELEILSNKVRF 1049 Query: 383 FLN-IDEVIEI 392 + I+E I++ Sbjct: 1050 IMEVINETIQV 1060 >UniRef50_D2V5K5 DNA topoisomerase II n=1 Tax=Naegleria gruberi RepID=D2V5K5_NAEGR Length = 1135 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 99/395 (25%), Positives = 171/395 (43%), Gaps = 42/395 (10%) Query: 29 RALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVL 88 R++P I DGLKP QR+I++A + L K + A V + YH HG+ + Y + Sbjct: 688 RSIPSIVDGLKPSQRKILFACLKRDLKDEIKVAQLAGYVSE-HSAYH-HGEQSLYGTITS 745 Query: 89 MAQPF--SYRYPLVDGQGNWGA----PDDPKSFAAMRYTESRLSKYSELLLSELGQGTAD 142 MAQ F + PL+ G +G DD A+ RY +RL+K + L+ + D Sbjct: 746 MAQDFVGANNIPLLYPSGQFGTRLQGGDDA---ASARYIYTRLNKLTRLIFLKEDDQILD 802 Query: 143 WVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTT 202 + DG + EPK +P +L+NG G+ G +T IP N I LID Sbjct: 803 YQEE-DGMIIEPKFYLPIIPMLLVNGAEGMGTGWSTSIPSFN-------PIDLIDSLNIL 854 Query: 203 LDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK-KEDGAVV---ISALP 258 LD + + P+ + +R KI N G + ++K K G + IS LP Sbjct: 855 LDSNAENIGNVKLPSLD--MWARGFKGKIEMNDSGKFISKGIFKMKSRGDSIEFDISELP 912 Query: 259 HQVSGARVLEQIAAQMRN-KKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFA 317 E + +++ K ++ E + EN I D D+ Sbjct: 913 ----IGEWTENYKSHLQSLVKKGLIKSKITERNTENSVGFTIAIN----DPDEFSESQLK 964 Query: 318 TTDLEKSYRINLNMIGLDGRPAVK--NLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHI 375 LEKS+ ++ + + ++ N+ +I+ ++ + R +R ++ ++++ K++ I Sbjct: 965 KLKLEKSFSLSNMTVFSENFDIIQFSNVNDIIKQFYLVRLSYYHQRKSHLMKQLEKQIRI 1024 Query: 376 LEGLLVAFLNI-----DEVIEIIRNEDEPKPALMS 405 L V FLN + I+ + E P+ ++ Sbjct: 1025 LSN-KVKFLNFITSNESNLNTFIKTKKENIPSFLT 1058 >UniRef50_Q5CQG8 DNA topoisomerase 2 n=4 Tax=Apicomplexa RepID=Q5CQG8_CRYPV Length = 1797 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 98/191 (51%), Gaps = 7/191 (3%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 +++ L +F + +S Y R++P + DGLKP QR++++A + LN K Sbjct: 803 INNQCRNLRYFDFIHKELVLFSRYDTT-RSIPNLLDGLKPGQRKVLFATFKKKLNNELKV 861 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGA-PDDPKSFAA 117 + A V + YH HG+S+ +V MAQ F S L++ G +G+ + K +A Sbjct: 862 AQLAGYVAE-HSAYH-HGESSLQSTIVNMAQNFVGSNNLNLLEPCGQFGSRKEGGKDASA 919 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY ++LSK++ + E ++ + DG EP +P IL+NGT GI G + Sbjct: 920 ARYIFTKLSKWTRYIFPEADDPLLTYLYD-DGQQIEPLYYVPIIPMILVNGTDGIGTGWS 978 Query: 178 TDIPPHNLREV 188 + +P +N +++ Sbjct: 979 SSVPNYNPKDI 989 >UniRef50_C0X5K0 Possible DNA topoisomerase IV subunit A (Fragment) n=2 Tax=Enterococcus faecalis RepID=C0X5K0_ENTFA Length = 465 Score = 76.3 bits (186), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 91/163 (55%), Gaps = 3/163 (1%) Query: 354 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLT 410 R+ + R + L+K KR HI+ GL+ A +D+VI IR + K A L+S + T Sbjct: 1 RKSVIINRCQFELDKARKREHIVAGLIKALSILDKVIATIRGSKDKKDAKKNLVSDYAFT 60 Query: 411 ETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQ 470 E QAEAI+ L+L L + ++ E LE++ +L IL +E+++ +++KKEL+ + Sbjct: 61 EEQAEAIVTLQLYRLTNTDITDLQEEAKTLEQQIAELLNILNNEKELFSVMKKELREVKK 120 Query: 471 AYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSA 513 YG+ R + ++E + + ++ E V + ++ G+++ + Sbjct: 121 QYGNPRLTQIEEEIQEIKIETAVLVAQEDVVVTVTHEGYIKRS 163 >UniRef50_C5KAQ6 DNA topoisomerase 2 n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KAQ6_9ALVE Length = 1579 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 93/190 (48%), Gaps = 11/190 (5%) Query: 12 EFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVL 71 +F + +S Y +M R++P + DG KP QR++++ + L + K A+ VG V Sbjct: 690 DFINKELVQFSKYDVM-RSIPSMVDGFKPSQRKVLFCALKRNLKSDTKV---AQFVGYVS 745 Query: 72 --GKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGA-PDDPKSFAAMRYTESRLS 126 YH HG+ + +V MAQ F S L+ G +G K A+ RY +RLS Sbjct: 746 EHSAYH-HGEQSLESCIVGMAQDFTGSNNLNLLFPSGQFGTRQQGGKDAASGRYIYTRLS 804 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 KY+ + +++ +G EPK +P +L+NG GI G +T++ ++ R Sbjct: 805 KYTRTIFHPDDDDVLEYLTE-EGQSIEPKWYCPIIPMVLVNGAEGIGTGWSTNVLSYDPR 863 Query: 187 EVAQAAIALI 196 E+ ALI Sbjct: 864 EIIHLLRALI 873 >UniRef50_A0BK44 Chromosome undetermined scaffold_111, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BK44_PARTE Length = 1196 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 22/188 (11%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 LA+H ++N R++P DGLKP QR+I++ + LN S + K + Sbjct: 355 LAMHSISDNL-----------RSIPSSIDGLKPTQRKIIHTL----LNHSKQEYKVSSLS 399 Query: 68 GDV--LGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 122 G V +YH HG+ + + +V MAQ F S L+ G +G K A RY Sbjct: 400 GLVTTYAQYH-HGEQSLQQTVVAMAQNFTGSNNINLLLPIGQFGTRSMGGKDAAQARYIS 458 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 ++LS + L +E T +++ +G EP LP +L+NG GI G +T +P Sbjct: 459 TKLSSLTTKLFNEDDLHTLNYLDE-EGYTVEPFWFTPILPLVLINGAEGIGTGWSTQVPN 517 Query: 183 HNLREVAQ 190 N RE+ Q Sbjct: 518 FNPREICQ 525 >UniRef50_D2XAH7 DNA topoisomerase II n=1 Tax=Marseillevirus RepID=D2XAH7_9VIRU Length = 1089 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 8/179 (4%) Query: 29 RALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDV--LGKYHPHGDSACYEAM 86 R++P + DGLKP QR+++YA + K K R G+V + YH HG+ + E + Sbjct: 666 RSIPSVFDGLKPSQRKVLYACFSSNIIGKNKKKHVDRLTGEVASVAGYH-HGEKSLTETI 724 Query: 87 VLMAQPF---SYRYPLVDGQGNWGAP-DDPKSFAAMRYTESRLSKYSELLLSELGQGTAD 142 + MAQ F L++ G++G K +A RY S + K + ++ + Sbjct: 725 IGMAQDFVGCGNNVRLLNPDGSFGTRLRGGKDHSASRYLSSFVEKIARVVFPPEDDDLYE 784 Query: 143 WVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKT 201 V D EP +P I++NG GI G +T+IPPHN EV +++ +T Sbjct: 785 KVFE-DNEYNEPINYIPIIPLIVVNGACGIGTGHSTEIPPHNPLEVCHWIRCWLEEQET 842 >UniRef50_A4HGT2 DNA topoisomerase 2 n=11 Tax=Trypanosomatidae RepID=A4HGT2_LEIBR Length = 1501 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 100/389 (25%), Positives = 167/389 (42%), Gaps = 35/389 (8%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 +++ +F + + +S+ +R++P DG KP QR+I+++ + L S K + A Sbjct: 658 QVSYRDFVDKELILFSI-ADCERSIPSAIDGFKPGQRKILFSCFKRNLVNSIKVVQLAGY 716 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTES 123 V + YH HG+ + + +V MAQ F S PL+ G +G K AA RY + Sbjct: 717 VSE-HSAYH-HGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHGGKDHAAGRYIFT 774 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 RL + + ++ + DG EP +P +L+NGTTGI G +T IP + Sbjct: 775 RLMHVARAIFHPADDFVVEYKDD-DGLSVEPFYYIPVIPMVLVNGTTGIGTGFSTSIPNY 833 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 N EV + L+ + Q P Y + + E K +GR VR Sbjct: 834 NPLEVIRNLERLMRGEEVHKMQ-------PWYFGFTGTMEEK-EPGKFISHGRYEVR--- 882 Query: 244 VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR- 302 DG V I+ LP V + ++ MR K+L +V +D + + P+ Sbjct: 883 ----PDGVVCITELPIGV-WTQTYKKFLEDMREKEL-VVQYREHTTDVTVDFEVFLHPQV 936 Query: 303 -SNRVDMDQVMNHLFATTDLEKSYRINLNMIG-----LDGRPAVKNLLEILSEWLVFRRD 356 V D V L + + I N G D +K+ + ++ R+D Sbjct: 937 LEQWVAQDVVEERLQLKEYVHATNIIAFNKEGQITKYWDAESVLKDFYLVRLDYYAKRKD 996 Query: 357 TV---RRRLNYRLEKVLKRL-HILEGLLV 381 + RRL +LE +++ + ++EG LV Sbjct: 997 YLLGELRRLTSKLENMVRFVREVVEGTLV 1025 >UniRef50_UPI0001698ACC DNA topoisomerase IV subunit A n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698ACC Length = 73 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 36/59 (61%), Positives = 43/59 (72%) Query: 521 PGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPG 579 PG KAGD + AA + +SNQ VF+DS+GRSYA+ TLPSAR QGEPLTG+L P G Sbjct: 6 PGSATKAGDHYLAAAQLRSNQAAVFLDSSGRSYALPAHTLPSARSQGEPLTGRLAPPAG 64 >UniRef50_Q7YZS4 DNA topoisomerase 2 n=1 Tax=Physarum polycephalum RepID=Q7YZS4_PHYPO Length = 1498 Score = 72.4 bits (176), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 87/364 (23%), Positives = 153/364 (42%), Gaps = 48/364 (13%) Query: 29 RALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVL 88 RA+P + DGLKP QR+++YA + GL K + A V + YH HG+ + + +V Sbjct: 1029 RAIPSVVDGLKPGQRKVLYASFKRGLTQEMKVAQLAGYVAEHTA-YH-HGEESLHGTIVN 1086 Query: 89 MAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVP 145 MAQ F + PL+ G +G K A+ RY ++L+ + + +L +++ Sbjct: 1087 MAQDFVGANNLPLLLPSGQFGTRLQGGKDAASARYIFTKLAPLTRTIFPDLDDPVLNYLE 1146 Query: 146 NFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQ 205 DG +P+ +P +L+NG+ G+ +G T IP +N P +D Sbjct: 1147 G-DGDRIQPEFFAPIIPMVLVNGSEGLGMGWRTSIPMYN--------------PTNLIDN 1191 Query: 206 LLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGAVV----------IS 255 LL ++ + P E + Y+ +GSV + + + V+ IS Sbjct: 1192 LLRLLH--NEPMEP--------LTPWYKGFKGSVELTPPFTFKTYGVIEPTKKEHIFKIS 1241 Query: 256 ALPHQVSGARVLEQIAAQMRNKK-LPMVDDLRDESDHENPTRLVIVPRSNRVD-MDQVMN 313 LP + E + ++ +K P + D + + + V PR + Q Sbjct: 1242 ELPVRKWTNDYKELLTTYVKPEKGKPTLKDFSEYNTDQKVDFEVTFPRGAEAKPIPQNAQ 1301 Query: 314 HLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRL 373 L LE ++ + M+ D A+K ++ L RD R+ Y ++ R Sbjct: 1302 DLLKLLRLESTFF--MKMVLFDRHGAIKEYMDPLD----IIRDFFEVRMEYYAKRKAARE 1355 Query: 374 HILE 377 +LE Sbjct: 1356 KVLE 1359 >UniRef50_B8C981 DNA topoisomerase 2 (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C981_THAPS Length = 1179 Score = 72.0 bits (175), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 97/198 (48%), Gaps = 19/198 (9%) Query: 12 EFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVL 71 +F +N +++S + R+LP + DGLKP QR+++YA + L K + A + Sbjct: 700 DFVDNELIHFSNANNI-RSLPNVVDGLKPSQRKVLYACFKRNLKDEIKVAQLAGYCAEHT 758 Query: 72 GKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWG----APDDPKSFAAMRYTESRL 125 YH HG+++ + ++ MAQ F S L+ G +G +D A+ RY + L Sbjct: 759 A-YH-HGEASLHSTIIGMAQDFCGSNNINLLTPSGQFGTRLMGGNDA---ASPRYIFTHL 813 Query: 126 SKYSELLLSELGQGTADWVPNF---DGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 S S LL D + N+ DG + EP+ +P +L+NG GI G +T IP Sbjct: 814 SPLSRLLFPV----DDDMLLNYKEEDGQMIEPEYFCPIIPLLLVNGCQGIGTGWSTFIPQ 869 Query: 183 HNLREVAQAAIALIDQPK 200 HN +V A +D+ K Sbjct: 870 HNPLDVLNYIRAKLDETK 887 >UniRef50_A7TEE2 DNA topoisomerase 2 n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TEE2_VANPO Length = 1404 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 80/359 (22%), Positives = 156/359 (43%), Gaps = 50/359 (13%) Query: 29 RALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVL 88 R++P + DG KP QR++++ ++ L K A V + YH HG+ + + +V Sbjct: 689 RSIPSVLDGFKPGQRKVLFCCFKINLTYEIKVGTLAAKVSEKTS-YH-HGEESLQQTIVG 746 Query: 89 MAQPF--SYRYPLVDGQGNWGA-PDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVP 145 +AQ F + L+ G++G+ K AA RY ++L+K + + +++ Sbjct: 747 LAQNFVGTNNIYLLKPAGSFGSRATGGKDAAAARYIHTQLNKVARSIFHPSDDALFNYLE 806 Query: 146 NFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQ 205 + DG+ EP+ +P +L+NG GI G +T+IP N ++ + L++ D+ Sbjct: 807 D-DGSPIEPEWYLPIIPMVLVNGAEGIGTGWSTNIPSFNPLDIIKNIRHLMN------DE 859 Query: 206 LLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSV------RMRAVWKKED---GAVVISA 256 ++D E+ Y +G V R R K E + I+ Sbjct: 860 VMD------------------EMYPWYRGWKGVVEKVDDHRFRLYGKVEQVGPNVLEITE 901 Query: 257 LPHQVSGARVLEQIAAQM--RNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNH 314 +P + + + E + + K P + D+ E H N R +I + + + Sbjct: 902 VPARTWTSSIKEYLLLGLSGNEKTKPWIKDM--EEQHTNDIRFIITLTPEEMAKTKKIG- 958 Query: 315 LFATTDLEKSYRINL-NMIGLDGRPAVK---NLLEILSEWLVFRRDTVRRRLNYRLEKV 369 + ++NL NM+ D ++ +L+IL+E+ R + ++R +Y +K+ Sbjct: 959 --VYDRFKLVSQVNLKNMVAFDAHGKIRKYDTVLDILTEFYYVRLEFYQKRKDYMSQKL 1015 >UniRef50_Q6PUA3 DNA topoisomerase 2 n=4 Tax=Tetrahymena thermophila RepID=Q6PUA3_TETTH Length = 1662 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 107/466 (22%), Positives = 198/466 (42%), Gaps = 76/466 (16%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 + L +F +N+S R++P + DGLKP QR+I++A + L K + + Sbjct: 650 KHLTYKDFVNKELINFSNSDNA-RSIPSLCDGLKPGQRKILFACFKRNLKNEIKVAQLSG 708 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPF------SYRYPLVDGQGNWGAPD-DPKSFAAM 118 V + YH HG+ + +V MAQ F +Y P+ G +G+ + K A+ Sbjct: 709 YVAE-HSAYH-HGEQSLESTIVGMAQSFVGTNNINYLMPI----GQFGSRNMGGKEAASA 762 Query: 119 RYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMAT 178 RY + L+K + + E ++ + +G EP +P LLNG GI G +T Sbjct: 763 RYIHTCLNKITRCVFPEPDDHILYYLED-EGQQVEPIYYLPIIPTALLNGADGIGTGWST 821 Query: 179 DIPPHNLREVAQA-AIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 IP +N RE+ + ++ P T L G E IT + + E Sbjct: 822 SIPCYNPRELVDSIEKRMMGVPFTDLLPWYKGFTGEISNNEKSQITVSGKYHLVNET--- 878 Query: 238 SVRMRAVWKKEDGAVVISALPHQV---SGARVLEQIAAQMRNKKLPMVDDLRDESDHENP 294 + I+ LP + LE+ ++K P ++D++ ++ Sbjct: 879 -------------TIEITELPIKKWIRDYKNFLEEKLESTKDKD-PEIEDIK---EYHAG 921 Query: 295 TRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRI-------NLNMIGLDGR-PAVKNLLEI 346 R+ V + + M++V ++K +++ N+ + +G+ N+ EI Sbjct: 922 NRVHFVVKMSEKQMEKVQRE-----GIDKYFKLQSTIPTTNMVLFNHEGKLTRYANICEI 976 Query: 347 LSEWLVFRRDTVRRRLNYRLEKVLKRLHILEG---LLVAFLNIDEVIEIIRNEDEPKPAL 403 + E+ R + +RR Y + K+ + L IL ++A +N E IR + + L Sbjct: 977 MEEFYEVRLNAYKRRKEYLVSKIERDLEILSNKKRFILAVIN-----ESIRVRNAKRKDL 1031 Query: 404 MSRFGLTETQAEAILELKLRHLAKLEEM-KIRGEQ--SELEKERDQ 446 I EL ++ ++++M KI+ + S+LE+E++Q Sbjct: 1032 -------------IKELSVQGYVQMKDMPKIKSSKLTSQLEQEQNQ 1064 >UniRef50_P34534 Putative DNA topoisomerase 2, mitochondrial n=5 Tax=Caenorhabditis RepID=TOP2M_CAEEL Length = 1054 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 120/506 (23%), Positives = 224/506 (44%), Gaps = 60/506 (11%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 D ++ EF + + + M V + R++P + DGLKP QR+I++ + ++ S + K Sbjct: 579 DGKTEISYQEFVDGQLMQFGM-VDLKRSIPSLIDGLKPSQRKILWTLLN-NMDESTEIKV 636 Query: 63 SARTVGDVLGK--YHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPDDPKSFAA- 117 S + G V + YH HG+ + ++ M Q F S PL+ G +G + + AA Sbjct: 637 S-QLAGAVAHRQSYH-HGEESLVRTIIRMGQTFCGSSNLPLLQPIGQFGTRHEGGNDAAS 694 Query: 118 MRYTESRLSKYSELLL----SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIA 173 RY + L+ + LL +L Q + +G + EP L +P IL+NGT GI Sbjct: 695 ARYIFTALAPTTRLLFPQADDDLLQKNVE-----EGMVVEPTWLCPIVPLILINGTEGIG 749 Query: 174 VGMATDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEA----EIITSRAEIR 229 G +T I N I +ID + +D + + P + E E++T I Sbjct: 750 TGWSTKIANRN-------PIDIIDMIRRKIDSISTEYEIPPFYEEFRGKLEVVTPTKFI- 801 Query: 230 KIYENGRGSVRMRAVWKKEDG--AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRD 287 G +++ +K ++ I LP + ++ E+++ + + LP+++ Sbjct: 802 -----SSGKIQLIRPERKNASTFSIEIVELPIGIWTSKYKEKLSKIV--ETLPVLEFSER 854 Query: 288 ESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR-PAVKNLLEI 346 ++ R+ + + + + + + L L S N + +G N+ EI Sbjct: 855 HTEKRVHFRITLDRKKSSRFLQKSNSDLLNYFKLRTSLTENRVLFDRNGELKEFGNISEI 914 Query: 347 LSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNI--DEVIEII---RNEDEPKP 401 +E+ RRD +RL + E+ +L +E L F+ + + IEI RN+ E K Sbjct: 915 AAEFFEVRRDLYEKRLKIQKEECEAKLIYVENQL-NFIEMVTNGTIEIRSMGRNQLEEKL 973 Query: 402 ALMS-RFGLTETQAE--------AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILA 452 M R T A+ +LE+ + L E ++ +S + R +L+ + Sbjct: 974 QEMGFRVDPMATIAKNSKKANYGYLLEMPVSRLTSDEMKRLEERKS---RRRTELEAAES 1030 Query: 453 SERKMNNLLKKELQADAQAYGDDRRS 478 ++ K ++ + EL A+A G++R+S Sbjct: 1031 ADWK--SVWRSELDKLAEAVGNNRKS 1054 >UniRef50_Q55BP5 Probable DNA topoisomerase 2 n=1 Tax=Dictyostelium discoideum RepID=TOP2_DICDI Length = 1521 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 96/201 (47%), Gaps = 14/201 (6%) Query: 6 ERLALHEFTENAYLNYSMYVI----MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 E+ + + T + ++N + + +R++P I DGLK R+ +Y+ + L K Sbjct: 742 EQFGVKKLTYSDFINKELVLFSIADCERSIPNIVDGLKTSHRKTLYSCFKRNLKKEIKV- 800 Query: 62 KSARTVGDVL--GKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFA 116 A+ +G V YH HG+++ Y +V MAQ F S L++ G++G K + Sbjct: 801 --AQLIGYVSEHSAYH-HGEASLYSTIVGMAQEFVGSNNINLLNPAGSYGTRIAGGKDCS 857 Query: 117 AMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGM 176 + RY +RL+ + + V + DG +PK +P IL+NG GI G Sbjct: 858 SARYIHTRLNDIARAVYHADDDPILSCVVD-DGKKVQPKFYIPVIPMILVNGCVGIGTGW 916 Query: 177 ATDIPPHNLREVAQAAIALID 197 ++ IP +N R++ Q ID Sbjct: 917 SSTIPNYNPRDLIQNMRLAID 937 >UniRef50_B3H4G2 DNA topoisomerase 2 n=14 Tax=Magnoliophyta RepID=B3H4G2_ARATH Length = 1438 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 92/187 (49%), Gaps = 11/187 (5%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 ++ +F + +SM + R++P + DGLKP QR+I++ + + K K A+ Sbjct: 681 KVTYSDFVNKELILFSM-ADLQRSIPSMVDGLKPGQRKILFVAFK---KIARKEMKVAQL 736 Query: 67 VGDV--LGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGA-PDDPKSFAAMRYT 121 VG V L YH HG+ + A++ MAQ + S L+ G +G K A+ RY Sbjct: 737 VGYVSLLSAYH-HGEQSLASAIIGMAQDYVGSNNINLLLPNGQFGTRTSGGKDSASARYI 795 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 ++LS + +L + D N DG EP +P +L+NG GI G +T IP Sbjct: 796 FTKLSPVTRILFPKDDDLLLD-YLNEDGQRIEPTWYMPIIPTVLVNGAEGIGTGWSTFIP 854 Query: 182 PHNLREV 188 +N RE+ Sbjct: 855 NYNPREI 861 >UniRef50_P30182 DNA topoisomerase 2 n=6 Tax=Eukaryota RepID=TOP2_ARATH Length = 1473 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 92/187 (49%), Gaps = 11/187 (5%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 ++ +F + +SM + R++P + DGLKP QR+I++ + + K K A+ Sbjct: 681 KVTYSDFVNKELILFSM-ADLQRSIPSMVDGLKPGQRKILFVAFK---KIARKEMKVAQL 736 Query: 67 VGDV--LGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGA-PDDPKSFAAMRYT 121 VG V L YH HG+ + A++ MAQ + S L+ G +G K A+ RY Sbjct: 737 VGYVSLLSAYH-HGEQSLASAIIGMAQDYVGSNNINLLLPNGQFGTRTSGGKDSASARYI 795 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 ++LS + +L + D N DG EP +P +L+NG GI G +T IP Sbjct: 796 FTKLSPVTRILFPKDDDLLLD-YLNEDGQRIEPTWYMPIIPTVLVNGAEGIGTGWSTFIP 854 Query: 182 PHNLREV 188 +N RE+ Sbjct: 855 NYNPREI 861 >UniRef50_D1ZCL6 DNA topoisomerase 2 n=6 Tax=Sordariomyceta RepID=D1ZCL6_SORMA Length = 1915 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 55/182 (30%), Positives = 93/182 (51%), Gaps = 7/182 (3%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 E+++ +F + +SM + R++P + DGLKP QR++++ + L K + A Sbjct: 790 EKISYTDFVNRELILFSMADNI-RSIPSMVDGLKPGQRKVLFGCFKQNLIHDQKVVELAG 848 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPDDPKSFAA-MRYTE 122 V YH HG+ + + +V +AQ F S ++ GN+G+ S AA RY Sbjct: 849 YVSKEAA-YH-HGEQSLQQTIVGLAQNFVGSNNINCLEPSGNFGSRLSGGSDAASARYIH 906 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +RLS + + L + ++ + DG L EPK+ LP +L+NG GI G +T IP Sbjct: 907 TRLSPLARKIFHPLDEPNLEFQFD-DGKLIEPKVYAPILPMVLVNGADGIGTGWSTSIPN 965 Query: 183 HN 184 ++ Sbjct: 966 YH 967 >UniRef50_C1E5N4 DNA topoisomerase 2 n=1 Tax=Micromonas sp. RCC299 RepID=C1E5N4_9CHLO Length = 1459 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 6/176 (3%) Query: 29 RALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVL 88 R++P + DG KP QR+++++ + L + K + + V + YH HG+++ +V Sbjct: 724 RSIPSVVDGFKPSQRKVLFSCFKRKLKSDIKVAQLSGYVSE-HSAYH-HGEASLASTIVG 781 Query: 89 MAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVP 145 +AQ F S L+ G +G K A+ RY +RL+ ++ E D++ Sbjct: 782 LAQDFVGSNNVNLLVPSGQFGTRLQGGKDHASPRYIFTRLAPICRVIFPECDDALLDYLD 841 Query: 146 NFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKT 201 DG + EP+ LP +L+NG GI G +T IP N R++ ++D T Sbjct: 842 E-DGQVIEPEHYLPILPLVLVNGADGIGTGWSTSIPNFNPRDIVANIRRILDDECT 896 >UniRef50_O41065 A583L protein n=7 Tax=Chlorovirus RepID=O41065_PBCV1 Length = 1061 Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 102/464 (21%), Positives = 194/464 (41%), Gaps = 55/464 (11%) Query: 12 EFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVL 71 +F + + +S Y ++R++P + DG KP QR+++Y + L + K + + V + Sbjct: 635 DFIDKELILFSRY-DLERSIPSVVDGFKPSQRKVLYCAFKRNLTSDVKVAQFSGYVAE-H 692 Query: 72 GKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDP--------KSFAAMRYTES 123 YH HG+ + +V +AQ + + NW P+ K A+ RY + Sbjct: 693 SAYH-HGEVSLQGTIVNLAQDY-----VGSNNINWLLPEGQFGSRLQGGKDHASARYIFT 746 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 +L+ + + + ++ + DG EP+ +P+IL+NG++GI G +T+IP + Sbjct: 747 KLNPKTRQVFVDTDDNLLKYLYD-DGDKIEPECYVPIIPSILVNGSSGIGTGSSTNIPSY 805 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIR-KIYENGRGSVRMR 242 N PK +D + ++ G D E+ + KI E G + Sbjct: 806 N--------------PKDIVDNVKRLISGEDL---VEMKPWYKGFKGKIMETSPGVYVTK 848 Query: 243 AVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 ++ +V+S LP E + + K + + ++D V+ Sbjct: 849 GLYMPNGKTIVVSELPVGKWTHDYKEHLDGLLEKKIISYFREKHSDTD-------VL--- 898 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNL---LEILSEWLVFRRDTVR 359 ++D V N LE + R + NM D +K L+I+ +W R+D Sbjct: 899 ---FEIDFVGNPNIDILKLETTIR-STNMHAFDPSGKIKKYDTPLDIIRDWFEVRKDLYV 954 Query: 360 RRLNYRLEKVLKRLHILEGL--LVAFLNIDEVIEIIRNEDEPKPALMS-RFGLTETQAEA 416 +R Y LE + R +I + + +N DE+I ++E L F + + + Sbjct: 955 KRKAYLLEDLTHRTNIAQNKHRFITMVNNDEIIINKKHESVISAELEKLNFYKVDGKYDY 1014 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNL 460 +L +++ L ++ E +L KE D L ++ N+L Sbjct: 1015 LLNMRISSLTLERATELEREAVKLNKELDDLSKTTETDMWNNDL 1058 >UniRef50_Q79BT3 Topoisomerase subunit ParC (Fragment) n=1 Tax=Neisseria gonorrhoeae RepID=Q79BT3_NEIGO Length = 155 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 5/94 (5%) Query: 591 DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM-----LLA 645 +Q L++S GYGF+ D+V R +AGK ++T V+PPV + +S + ++A Sbjct: 5 EQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFINPDCKIIA 64 Query: 646 ITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEA 679 T R L FP+ +L ++KGKG +II + + E+ Sbjct: 65 ATSQNRALAFPIGELKIMAKGKGLQIIGLNAGES 98 >UniRef50_P06786 DNA topoisomerase 2 n=27 Tax=Fungi/Metazoa group RepID=TOP2_YEAST Length = 1428 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 85/361 (23%), Positives = 155/361 (42%), Gaps = 49/361 (13%) Query: 29 RALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVL 88 R++P + DG KP QR+++Y + L + K + A V + YH HG+ + + ++ Sbjct: 690 RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA-YH-HGEQSLAQTIIG 747 Query: 89 MAQPF--SYRYPLVDGQGNWGA-PDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVP 145 +AQ F S L+ G +G K AA RY + L+K + + ++ Sbjct: 748 LAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ 807 Query: 146 NFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQ 205 + T++ LP LP IL+NG GI G +T IPP N E+ + L++ + L+Q Sbjct: 808 EDEKTVEPEWYLPI-LPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEE--LEQ 864 Query: 206 LLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGAVVISALPHQVSGAR 265 + +G E EI + G + D + I+ LP + + Sbjct: 865 MHPWFRGWTGTIE--------EIEPLRYRMYGRIEQIG-----DNVLEITELPARTWTST 911 Query: 266 VLEQIAAQM--RNKKLPMVDDLRDESDHENPTRLVI------VPRSNRVDMDQVMNHLFA 317 + E + + +K P + D+ E H++ + +I + ++ ++ + L + Sbjct: 912 IKEYLLLGLSGNDKIKPWIKDM--EEQHDDNIKFIITLSPEEMAKTRKIGFYERFK-LIS 968 Query: 318 TTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEWLVF-------RRDTVRRRLNYRLE 367 L +NM+ D +K ++ EILSE+ R+D + RL + +E Sbjct: 969 PISL-------MNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVE 1021 Query: 368 K 368 K Sbjct: 1022 K 1022 >UniRef50_A0C0L0 DNA topoisomerase 2 n=3 Tax=Paramecium tetraurelia RepID=A0C0L0_PARTE Length = 1274 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 14/200 (7%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 L EF +++SM + R++P + DGLKP QR++++A + L K + + Sbjct: 653 LGYSEFIHKELIHFSMADNI-RSIPSLMDGLKPGQRKVLFACFKRNLKQEIKVVQLGGYI 711 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGA-PDDPKSFAAMRYTESR 124 + YH HGD + ++ MAQ F S L+ +G +G+ K A+ RY + Sbjct: 712 AE-HSAYH-HGDLSLVSTIIGMAQNFVGSNNINLLLPKGQFGSRAMGGKDHASARYISTA 769 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 L+K + + E + + DG + EP+ +P L+NG GI G +T I +N Sbjct: 770 LNKITRYIFPEQDDHLLKYQED-DGQMVEPEYYVPIIPMSLVNGAEGIGTGWSTSIQNYN 828 Query: 185 LREVAQAAIALIDQPKTTLD 204 I L++Q K LD Sbjct: 829 -------PIELVNQIKNRLD 841 >UniRef50_D0MV61 DNA topoisomerase 2 n=2 Tax=Eukaryota RepID=D0MV61_PHYIN Length = 1329 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 6/172 (3%) Query: 29 RALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVL 88 R+LP + DGLK QR++++A + L + K + A + YH HG+++ + +V Sbjct: 686 RSLPSVVDGLKISQRKVLFACMKRKLTSEVKVAQLAGYCSEHTA-YH-HGEASLHSTIVN 743 Query: 89 MAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVP 145 MAQ F S PL+ G +G K A+ RY + L K++ L+ E + Sbjct: 744 MAQDFVGSKNLPLLFPSGQFGTRLQGGKDAASPRYIFTLLQKHTRLVFPEEDDALLRYAD 803 Query: 146 NFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALID 197 + DG EP +P +L+NG GI G ++ IP H+ V + L+D Sbjct: 804 D-DGFPVEPVFYVPIIPMLLVNGAEGIGTGWSSSIPCHHPVLVIDNLLKLLD 854 >UniRef50_C7U0P4 DNA topoisomerase II n=2 Tax=unclassified Phycodnaviridae RepID=C7U0P4_9PHYC Length = 1072 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/189 (26%), Positives = 91/189 (48%), Gaps = 7/189 (3%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 + L++ F +N+S+ + R++ + DGLKP QR+++YA L K + A Sbjct: 640 VKNLSITHFVRKDLVNFSL-ADLKRSIAHMADGLKPSQRKVMYACFHKNLKDEMKVAQLA 698 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYT 121 V D YH HG+ + + +V +A + S L++ G +G K + RY Sbjct: 699 AYVADK-SAYH-HGEVSLADTIVKLANDYMGSNNINLLEPCGQFGTRLMGGKDASQTRYI 756 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 ++L+K + + +++ + DG EP LP +L+NGT GI G + +P Sbjct: 757 FTKLTKDARKIFDPRDDPVLNYLDD-DGRAIEPDFYMPTLPMVLVNGTEGIGTGFSCYVP 815 Query: 182 PHNLREVAQ 190 P N +++ + Sbjct: 816 PFNPKDIKE 824 >UniRef50_B7XIW3 DNA topoisomerase 2 n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XIW3_ENTBH Length = 1159 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 112/478 (23%), Positives = 206/478 (43%), Gaps = 98/478 (20%) Query: 29 RALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVL--GKYHPHGDSACYEAM 86 R++P + DGLKP QR+++++ + L K A+ VG V YH HG+++ + Sbjct: 665 RSIPSVIDGLKPGQRKVIFSCFKRNLKTEIKV---AQLVGYVSEHSAYH-HGEASLAATI 720 Query: 87 VLMAQPF--SYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSELGQGTADW 143 + +A F S L+ G +G+ K A+ RY + L+ S L+ E Sbjct: 721 INLAHDFVGSNNINLLLPLGQFGSRLLGGKDSASPRYIFTNLNPLSRLIFHEHD------ 774 Query: 144 VPNFDGTLQ-----EPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQ 198 +P + ++ EP +P +L+NGT GI G +T+IP HN + LI Sbjct: 775 IPILESQIEDNLVIEPTYYVPIIPMVLVNGTDGIGTGWSTNIPNHN-------PLDLIKN 827 Query: 199 PKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGAVVISALP 258 K L+ Q P+ E+ Y N +G++ I+A Sbjct: 828 IKRLLNN-----QEPE------------EMIPYYRNYKGTITK------------INAGK 858 Query: 259 HQVSGARVLEQIAAQMRN-KKLPM------VDDLRDESDHENPTRLVIVPRSNR-VDMDQ 310 + +S +V E I + N +LP+ + D++ +N + +++ +D+ Sbjct: 859 Y-ISCGKVFENINKKEINVVELPIGVWTQAYKEYLDQAIADNVIKSFKDYSTDKTIDILI 917 Query: 311 VMNHLFATTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEWLVFRRDTVRRRLNYRLE 367 MN+ ++ L S N NM+ D +K N LEIL ++ R + +R YRL+ Sbjct: 918 HMNNNEFSSKLTTSISTN-NMVCFDRNGKIKKYHNTLEILKDFYEVRLEFYNKRKIYRLK 976 Query: 368 -------KVLKRLHILEGLLVAFLNIDE------VIEIIRNEDEPKPALMSRFGLTETQA 414 K+ ++ +EG++ + I + ++E+ R E +R+ Sbjct: 977 LLADELNKLKNKVRFIEGVITGSIIITQRPLNEIILELERKE-------FTRYD----NY 1025 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 E +L++K+ L K + K+R E + E ++L+ + + NL ++L + Y Sbjct: 1026 EYLLDMKISSLTKEKINKLREEYNNKNIEYNELKN-----KSIKNLWFEDLDKFEKEY 1078 >UniRef50_P08096 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces pombe RepID=TOP2_SCHPO Length = 1485 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 92/186 (49%), Gaps = 7/186 (3%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 ++ + +F + +SM + R++P + DGLKP QR++VY + L K + A Sbjct: 722 QIPIDDFINRELIQFSMADNI-RSIPSVVDGLKPGQRKVVYYCFKRNLVHETKVSRLAGY 780 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGA-PDDPKSFAAMRYTES 123 V YH HG+ + + +V +AQ F S L+ G +G + K+ +A RY + Sbjct: 781 VASETA-YH-HGEVSMEQTIVNLAQNFVGSNNINLLMPNGQFGTRSEGGKNASASRYLNT 838 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 LS + +L + ++ N +G EP+ LP +L+NG GI G +T IP + Sbjct: 839 ALSPLARVLFNSNDDQLLNY-QNDEGQWIEPEYYVPILPMVLVNGAEGIGTGWSTFIPNY 897 Query: 184 NLREVA 189 N +++ Sbjct: 898 NPKDIT 903 >UniRef50_A8PTE9 DNA topoisomerase 2 n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PTE9_MALGO Length = 1376 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 6/163 (3%) Query: 29 RALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVL 88 R++P + DGLKP QR+++++ + L K + V + YH HGD A +V Sbjct: 671 RSIPSVVDGLKPGQRKVIFSCFKRKLKTEIKVHQLQGYVSE-HSAYH-HGDQALTMTIVG 728 Query: 89 MAQPF--SYRYPLVDGQGNWGAPD-DPKSFAAMRYTESRLSKYSELLLSELGQGTADWVP 145 +AQ F S L+ G +G+ K A+ RY + + + + L+ + +++ Sbjct: 729 LAQDFCGSNNVNLLMPNGQFGSRSMGGKDAASARYIFTAVPRITRLMFHADDEPLLNYLE 788 Query: 146 NFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 + DG EP+ +P +LLNG GI G +T +P +N REV Sbjct: 789 D-DGQSIEPEWYAPVVPQVLLNGAEGIGTGWSTFVPNYNPREV 830 >UniRef50_D2TEU4 Putative DNA topoisomerase n=2 Tax=dsDNA viruses, no RNA stage RepID=D2TEU4_9VIRU Length = 1103 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 94/192 (48%), Gaps = 10/192 (5%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIV-YAMSELGLNASAKFKKS 63 A+ + F + +++S Y + R++P + DG K QR++V YA++ +G N AK + Sbjct: 641 AQSTTIERFIYDDLMHFSNYDNI-RSIPKMLDGQKAGQRKVVFYALNHVGKN-EAKVAQM 698 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 A T V +YH HG+ + ++ MA + S+ PL+ G +G+ S AA RY Sbjct: 699 AGTAAQVT-QYH-HGEVSLANTIIGMAATYTGSHNLPLLYPSGQFGSRHAKNSAAAPRYI 756 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQ-EPKMLPARLPNILLNGTTGIAVGMATDI 180 + +S + L+ + N D + EP + +P +L+NG GI G D+ Sbjct: 757 FTHISSFLPRLIKSEDNDVLTY--NVDENKKVEPTVYIPVIPIVLVNGANGIGTGWKCDV 814 Query: 181 PPHNLREVAQAA 192 P +N EV A Sbjct: 815 PQYNPLEVIDAC 826 >UniRef50_P90520 DNA topoisomerase 2, mitochondrial n=1 Tax=Dictyostelium discoideum RepID=TOP2M_DICDI Length = 1284 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 7/173 (4%) Query: 12 EFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVL 71 +F ++YS + R++P + DGLKP QR+I++A + L K + + V + Sbjct: 792 DFINKELIHYSWAANL-RSIPSLIDGLKPGQRKILFASFKRRLTNEIKVSQLSGYVAEQT 850 Query: 72 GKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPDDPKS-FAAMRYTESRLSKY 128 YH HG+ + +V MA F S PL+ G +G S A+ RY ++L Sbjct: 851 S-YH-HGEQSLNSTIVKMAHNFVGSNNLPLLTPSGQFGTRLQGGSDSASARYIFTKLEPV 908 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 + L +EL +++ ++Q +P +P +L+NG+ GI VGM+T IP Sbjct: 909 ARYLFNELDDPLLNYLEEEGESIQPDYYIPI-IPMLLVNGSEGIGVGMSTSIP 960 >UniRef50_Q9Y8G8 DNA topoisomerase 2 n=79 Tax=cellular organisms RepID=TOP2_PENCH Length = 1587 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 81/383 (21%), Positives = 161/383 (42%), Gaps = 40/383 (10%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 +++ +F + +SM + R++P + DGLKP QR+++Y L K + A Sbjct: 719 DKITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTCFRRNLKKDMKVVELAG 777 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTE 122 V + HG+ + + +V +AQ F S ++ GN+G+ A+ RY Sbjct: 778 HVSGTTA--YQHGEGSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGADCASARYIY 835 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +RL ++ + + + DG E ++ +P IL+NG GI G ++ P Sbjct: 836 TRLWPFARRVFHNHDDPLLTYNED-DGAKIEQEVYVPVVPMILINGADGIGTGWSSSTPN 894 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQG-PDYPTEAEIITSRAEIRKIYENGRGSVRM 241 +N P+ ++ L ++ G P P + E+ + G+ + Sbjct: 895 YN--------------PEDIVENLKRMMDGEPLKPMQPWFRGFTGEVTAV---GQDRFKF 937 Query: 242 RAVWKKE-DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 + K+ D V I+ LP + +++ ++ +K P ++D D+ T++ V Sbjct: 938 SGIIKETGDKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSF--IKDYKDYNTHTKVHFV 995 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRIN-----LNMIGLDGRPAVK--NLLEILSEWLVF 353 + MD+ LE+ ++++ N++ D K ++ +I+ E+ Sbjct: 996 -----IQMDEKHMKTAIAEGLEEKFKLSKTMTTTNLVAFDPERITKYASVEDIMKEFYAV 1050 Query: 354 RRDTVRRRLNYRLEKVLKRLHIL 376 R RR Y+L ++ K L L Sbjct: 1051 RLKYYERRKQYQLSEMQKELDKL 1073 >UniRef50_C6LX36 DNA topoisomerase 2 n=3 Tax=Giardia intestinalis RepID=C6LX36_GIALA Length = 1492 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 77/156 (49%), Gaps = 6/156 (3%) Query: 29 RALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVL 88 RA+P + DGLKP QR+++YA + L + K + + V D YH HG+++ +V Sbjct: 756 RAIPSLMDGLKPGQRKVLYACFKRNLKSKLKVSQLSGYVSDK-AAYH-HGEASLNGTIVN 813 Query: 89 MAQPF--SYRYPLVDGQGNWGA-PDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVP 145 MAQ F S L+ G +G+ K +A RY + L + L E + Sbjct: 814 MAQSFTGSNNIALLYPAGIFGSRARGGKDSSAPRYISTYLDPLARYLFPEPDDAIMQYKE 873 Query: 146 NFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 + DG + EP LP +L+NG+ GI G +T IP Sbjct: 874 D-DGKVIEPFYYAPILPMVLINGSDGIGTGFSTTIP 908 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q9HUK1 DNA topoisomerase 4 subunit A n=318 Tax=Proteoba... 930 0.0 UniRef50_P43702 DNA topoisomerase 4 subunit A n=115 Tax=Bacteria... 905 0.0 UniRef50_P05653 DNA gyrase subunit A n=10 Tax=cellular organisms... 848 0.0 UniRef50_C8NBL7 Topoisomerase IV subunit A n=1 Tax=Cardiobacteri... 845 0.0 UniRef50_A0L827 DNA topoisomerase IV subunit A n=1 Tax=Magnetoco... 839 0.0 UniRef50_Q0W7S4 Type II DNA topoisomerase II (Gyrase), subunit A... 838 0.0 UniRef50_C9KLW4 DNA gyrase, A subunit n=1 Tax=Mitsuokella multac... 832 0.0 UniRef50_P0C0R0 DNA gyrase subunit A n=296 Tax=cellular organism... 832 0.0 UniRef50_Q5HJZ0 DNA gyrase subunit A n=200 Tax=Bacteria RepID=GY... 822 0.0 UniRef50_C8WIN1 DNA gyrase, A subunit n=39 Tax=Bacteria RepID=C8... 821 0.0 UniRef50_D1B8A6 DNA gyrase, A subunit n=1 Tax=Thermanaerovibrio ... 820 0.0 UniRef50_Q8DPM2 DNA gyrase subunit A n=213 Tax=Bacteria RepID=GY... 819 0.0 UniRef50_P48354 DNA gyrase subunit A n=46 Tax=Bacteria RepID=GYR... 817 0.0 UniRef50_A5EV71 DNA topoisomerase IV, A subunit n=2 Tax=Gammapro... 817 0.0 UniRef50_B8CZP0 DNA gyrase, A subunit n=5 Tax=Bacteria RepID=B8C... 812 0.0 UniRef50_P41513 DNA gyrase subunit A n=98 Tax=Bacteria RepID=GYR... 811 0.0 UniRef50_Q2IHQ4 DNA gyrase subunit A n=15 Tax=cellular organisms... 807 0.0 UniRef50_Q55738 DNA gyrase subunit A n=43 Tax=cellular organisms... 805 0.0 UniRef50_C6XXU9 DNA gyrase, A subunit n=14 Tax=Bacteria RepID=C6... 804 0.0 UniRef50_Q1IH79 DNA gyrase subunit A n=5 Tax=Bacteria RepID=Q1IH... 804 0.0 UniRef50_B4W7D2 DNA topoisomerase IV, A subunit n=1 Tax=Brevundi... 801 0.0 UniRef50_B2RJ49 DNA gyrase A subunit n=17 Tax=Bacteria RepID=B2R... 799 0.0 UniRef50_A8LLG0 DNA topoisomerase IV, A subunit n=23 Tax=Alphapr... 799 0.0 UniRef50_O33926 DNA gyrase subunit A n=8 Tax=Thermotogaceae RepI... 799 0.0 UniRef50_C5SLW9 DNA topoisomerase IV, A subunit n=1 Tax=Asticcac... 798 0.0 UniRef50_C7H1V9 DNA gyrase, A subunit n=3 Tax=Clostridiales RepI... 798 0.0 UniRef50_C5JAG1 DNA topoisomerase IV subunit A n=1 Tax=unculture... 798 0.0 UniRef50_P48372 DNA gyrase subunit A n=78 Tax=Bacteria RepID=GYR... 796 0.0 UniRef50_A1V9C1 DNA gyrase subunit A n=18 Tax=Bacteria RepID=A1V... 795 0.0 UniRef50_Q59749 DNA topoisomerase 4 subunit A n=64 Tax=Alphaprot... 794 0.0 UniRef50_A4JTQ2 DNA topoisomerase IV subunit A n=34 Tax=Proteoba... 790 0.0 UniRef50_Q1RGX8 DNA topoisomerase 4 subunit A n=15 Tax=Rickettsi... 789 0.0 UniRef50_C7MEZ8 DNA gyrase subunit A n=21 Tax=Actinobacteridae R... 788 0.0 UniRef50_C6X523 DNA gyrase subunit A n=20 Tax=Bacteria RepID=C6X... 787 0.0 UniRef50_A9GW54 DNA gyrase subunit A n=2 Tax=Proteobacteria RepI... 786 0.0 UniRef50_C8PS29 DNA gyrase, A subunit n=1 Tax=Treponema vincenti... 782 0.0 UniRef50_C9M5P0 DNA gyrase, A subunit n=1 Tax=Jonquetella anthro... 781 0.0 UniRef50_O54478 DNA topoisomerase 4 subunit A n=18 Tax=Alphaprot... 780 0.0 UniRef50_D1R591 Putative uncharacterized protein n=1 Tax=Parachl... 780 0.0 UniRef50_B0MRF5 Putative uncharacterized protein n=2 Tax=Clostri... 780 0.0 UniRef50_A6DH72 DNA gyrase subunit A n=1 Tax=Lentisphaera araneo... 779 0.0 UniRef50_D1Y742 DNA gyrase, A subunit n=1 Tax=Pyramidobacter pis... 777 0.0 UniRef50_B9ZEE7 DNA gyrase, A subunit n=1 Tax=Natrialba magadii ... 777 0.0 UniRef50_C0R046 DNA gyrase subunit A n=2 Tax=Brachyspira RepID=C... 777 0.0 UniRef50_Q9RT53 DNA gyrase, subunit A n=2 Tax=Bacteria RepID=Q9R... 776 0.0 UniRef50_O84192 DNA gyrase subunit A n=16 Tax=Bacteria RepID=GYR... 776 0.0 UniRef50_P22446 DNA gyrase subunit A n=3 Tax=Mycoplasma RepID=GY... 774 0.0 UniRef50_O83051 DNA gyrase subunit A n=6 Tax=Bacteria RepID=GYRA... 774 0.0 UniRef50_A8G5D2 DNA gyrase/topoisomerase IV, subunit A n=16 Tax=... 773 0.0 UniRef50_D0B2I0 DNA topoisomerase IV subunit A n=40 Tax=Rhizobia... 772 0.0 UniRef50_P48371 DNA gyrase subunit A n=482 Tax=cellular organism... 771 0.0 UniRef50_Q9ZLD9 DNA gyrase subunit A n=50 Tax=Campylobacterales ... 771 0.0 UniRef50_D1N7T7 DNA gyrase, A subunit n=1 Tax=Victivallis vadens... 771 0.0 UniRef50_C6XJ15 DNA gyrase, A subunit n=28 Tax=Bacteria RepID=C6... 769 0.0 UniRef50_Q2S0H7 DNA gyrase, A subunit n=1 Tax=Salinibacter ruber... 768 0.0 UniRef50_A0Q573 DNA topoisomerase IV subunit A n=34 Tax=Bacteria... 768 0.0 UniRef50_Q1RID9 DNA gyrase subunit A n=218 Tax=Bacteria RepID=GY... 766 0.0 UniRef50_D0LNR4 DNA gyrase, A subunit n=3 Tax=Bacteria RepID=D0L... 765 0.0 UniRef50_D1AVF2 DNA gyrase, A subunit n=1 Tax=Streptobacillus mo... 765 0.0 UniRef50_P47719 DNA gyrase subunit A n=26 Tax=Bacteria RepID=GYR... 764 0.0 UniRef50_C6XHT3 DNA topoisomerase IV subunit A n=27 Tax=Alphapro... 763 0.0 UniRef50_C6CYI7 DNA gyrase, A subunit n=9 Tax=Bacillales RepID=C... 760 0.0 UniRef50_P57277 DNA gyrase subunit A n=76 Tax=Proteobacteria Rep... 760 0.0 UniRef50_B8FW91 DNA gyrase, A subunit n=2 Tax=Desulfitobacterium... 759 0.0 UniRef50_Q2NAD1 Type IIA topoisomeraseA subunit n=30 Tax=Alphapr... 759 0.0 UniRef50_Q5YLB5 DNA gyrase subunit A, chloroplastic/mitochondria... 758 0.0 UniRef50_C6HYH3 DNA gyrase, A subunit n=1 Tax=Leptospirillum fer... 758 0.0 UniRef50_C5JAM2 DNA gyrase subunit A n=1 Tax=uncultured bacteriu... 758 0.0 UniRef50_C1TNA3 DNA gyrase subunit A n=1 Tax=Dethiosulfovibrio p... 757 0.0 UniRef50_P35810 DNA gyrase subunit A n=1 Tax=Fibrobacter succino... 757 0.0 UniRef50_B0S912 DNA gyrase subunit A n=6 Tax=Leptospira RepID=B0... 757 0.0 UniRef50_B1ZTK3 DNA gyrase, A subunit n=3 Tax=Verrucomicrobia Re... 756 0.0 UniRef50_A1TLU5 DNA topoisomerase IV subunit A n=22 Tax=Betaprot... 755 0.0 UniRef50_Q1D9G9 Type II DNA topoisomerase, A subunit n=3 Tax=Myx... 750 0.0 UniRef50_P48374 DNA topoisomerase 4 subunit A n=17 Tax=Betaprote... 750 0.0 UniRef50_C7M119 DNA gyrase, A subunit n=1 Tax=Acidimicrobium fer... 750 0.0 UniRef50_B5RLZ1 DNA gyrase, subunit A n=5 Tax=Borrelia RepID=B5R... 749 0.0 UniRef50_D1JED8 DNA gyrase subunit A n=1 Tax=uncultured archaeon... 747 0.0 UniRef50_Q2JY71 Type II DNA topoisomerase, A subunit n=10 Tax=Cy... 745 0.0 UniRef50_Q2JQA2 Type II DNA topoisomerase, A subunit n=2 Tax=Chr... 745 0.0 UniRef50_UPI0001B9EC7F DNA topoisomerase IV, A subunit n=1 Tax=G... 742 0.0 UniRef50_Q45066 DNA topoisomerase 4 subunit A n=136 Tax=Firmicut... 740 0.0 UniRef50_C5CST5 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Vari... 740 0.0 UniRef50_Q89AS3 DNA gyrase subunit A n=11 Tax=Proteobacteria Rep... 739 0.0 UniRef50_B8CXA6 DNA gyrase subunit A n=1 Tax=Halothermothrix ore... 737 0.0 UniRef50_D2LZG6 DNA topoisomerase IV, A subunit n=1 Tax=Bacillus... 737 0.0 UniRef50_Q21V46 DNA topoisomerase IV subunit A n=83 Tax=Bacteria... 737 0.0 UniRef50_D2QWS9 DNA gyrase, A subunit n=5 Tax=Planctomycetaceae ... 737 0.0 UniRef50_UPI00016C558B DNA gyrase subunit A n=1 Tax=Gemmata obsc... 735 0.0 UniRef50_Q9HJB6 DNA gyrase, subunit A (GyrA) related protein n=5... 735 0.0 UniRef50_O51396 DNA gyrase subunit A n=18 Tax=Borrelia burgdorfe... 734 0.0 UniRef50_A7HL65 DNA gyrase, A subunit n=4 Tax=Thermotogaceae Rep... 732 0.0 UniRef50_A9F3U1 DNA gyrase subunit A n=3 Tax=Myxococcales RepID=... 732 0.0 UniRef50_C0ZEN0 DNA topoisomerase IV subunit A n=1 Tax=Brevibaci... 731 0.0 UniRef50_C8PKZ3 DNA gyrase, A subunit n=2 Tax=Campylobacter RepI... 730 0.0 UniRef50_B2URM6 DNA gyrase, A subunit n=5 Tax=Verrucomicrobia Re... 729 0.0 UniRef50_Q2NJM2 DNA gyrase subunit A n=5 Tax=Candidatus Phytopla... 728 0.0 UniRef50_B8BXG7 DNA topoisomerase IV, ATP/GTP binding site n=1 T... 726 0.0 UniRef50_C9Z0I9 GyrA-like gyrase subunit n=9 Tax=Actinomycetales... 725 0.0 UniRef50_Q1UZ45 DNA gyrase subunit A n=2 Tax=Candidatus Pelagiba... 725 0.0 UniRef50_Q2S2H4 Type II DNA topoisomerase, A subunit n=2 Tax=Rho... 722 0.0 UniRef50_C7XU56 DNA gyrase, A subunit n=16 Tax=Lactobacillales R... 719 0.0 UniRef50_Q8CSN8 DNA topoisomerase 4 subunit A n=77 Tax=Bacteria ... 719 0.0 UniRef50_A9NF72 DNA topoisomerase IV, subunit A n=1 Tax=Acholepl... 718 0.0 UniRef50_Q2GCH4 DNA gyrase, A subunit n=2 Tax=Neorickettsia RepI... 717 0.0 UniRef50_B6BPL3 DNA gyrase, A subunit n=3 Tax=Bacteria RepID=B6B... 716 0.0 UniRef50_B5Y886 DNA gyrase, A subunit n=1 Tax=Coprothermobacter ... 715 0.0 UniRef50_B5Y5U7 Predicted protein n=1 Tax=Phaeodactylum tricornu... 714 0.0 UniRef50_B9ZQ27 DNA gyrase, A subunit n=1 Tax=Thioalkalivibrio s... 713 0.0 UniRef50_Q114B8 DNA topoisomerase IV subunit A n=4 Tax=Cyanobact... 712 0.0 UniRef50_C6RQR3 DNA gyrase, A subunit n=3 Tax=Moraxellaceae RepI... 712 0.0 UniRef50_D0SBV6 Type IIA topoisomerase n=3 Tax=Gammaproteobacter... 711 0.0 UniRef50_C5CCL2 DNA topoisomerase IV subunit A n=41 Tax=Actinoba... 710 0.0 UniRef50_A6CC19 Type II DNA topoisomerase, A subunit n=3 Tax=Pla... 709 0.0 UniRef50_C5B4N9 DNA gyrase subunit A n=1 Tax=Methylobacterium ex... 708 0.0 UniRef50_Q7UU73 DNA gyrase subunit A n=1 Tax=Rhodopirellula balt... 708 0.0 UniRef50_C1EGN9 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 708 0.0 UniRef50_Q4A7J5 DNA gyrase subunit A n=5 Tax=Mycoplasma hyopneum... 707 0.0 UniRef50_P72525 DNA topoisomerase 4 subunit A n=182 Tax=Firmicut... 705 0.0 UniRef50_O67108 DNA gyrase subunit A n=2 Tax=Aquificaceae RepID=... 700 0.0 UniRef50_D2MM14 DNA topoisomerase IV, A subunit n=2 Tax=Erysipel... 700 0.0 UniRef50_Q2ST76 DNA gyrase, A subunit n=7 Tax=Mollicutes RepID=Q... 699 0.0 UniRef50_D2REE0 DNA gyrase, A subunit n=3 Tax=Archaeoglobaceae R... 693 0.0 UniRef50_B7KIH9 DNA topoisomerase (ATP-hydrolyzing) n=6 Tax=Cyan... 693 0.0 UniRef50_A4S991 Predicted protein n=1 Tax=Ostreococcus lucimarin... 691 0.0 UniRef50_B3TAI1 Putative DNA gyrase/topoisomerase IV, subunit A ... 691 0.0 UniRef50_C8NZH8 DNA topoisomerase IV, A subunit n=1 Tax=Erysipel... 688 0.0 UniRef50_Q2SS33 DNA topoisomerase IV, A subunit n=5 Tax=Mollicut... 688 0.0 UniRef50_C1N3Z1 Predicted protein n=2 Tax=cellular organisms Rep... 683 0.0 UniRef50_A9KS51 DNA topoisomerase (ATP-hydrolyzing) n=4 Tax=Firm... 683 0.0 UniRef50_D1BTH4 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Acti... 682 0.0 UniRef50_Q04F36 DNA topoisomerase IV subunit A n=1 Tax=Oenococcu... 682 0.0 UniRef50_A8UVW0 DNA gyrase A subunit n=1 Tax=Hydrogenivirga sp. ... 670 0.0 UniRef50_D1C5K4 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Spha... 666 0.0 UniRef50_D0RNU6 DNA gyrase subunit A n=1 Tax=alpha proteobacteri... 665 0.0 UniRef50_Q0SRA9 DNA gyrase/topoisomerase IV, A subunit family pr... 665 0.0 UniRef50_B5IIX4 DNA gyrase/topoisomerase IV, A subunit domain pr... 665 0.0 UniRef50_Q98QI8 TOPOISOMERASE IV SUBUNIT A n=1 Tax=Mycoplasma pu... 656 0.0 UniRef50_Q5MZD4 DNA gyrase A subunit n=8 Tax=Cyanobacteria RepID... 656 0.0 UniRef50_B8DTB4 DNA gyrase subunit A n=23 Tax=Actinobacteridae R... 656 0.0 UniRef50_Q98RX7 DNA gyrase A-subunit n=2 Tax=Cryptophyta RepID=Q... 653 0.0 UniRef50_C3CV72 DNA topoisomerase n=1 Tax=Bacillus thuringiensis... 652 0.0 UniRef50_Q7NB60 ParC/GyrA n=1 Tax=Mycoplasma gallisepticum RepID... 651 0.0 UniRef50_B5ZBW2 DNA topoisomerase IV, A subunit family protein n... 647 0.0 UniRef50_P73077 DNA topoisomerase 4 subunit A n=5 Tax=Bacteria R... 642 0.0 UniRef50_Q7V9E4 DNA gyrase/topoisomerase IV, subunit A n=17 Tax=... 640 0.0 UniRef50_C4Z0V3 DNA gyrase subunit A n=29 Tax=Bacteria RepID=C4Z... 640 0.0 UniRef50_Q83G39 DNA gyrase subunit A-like protein n=2 Tax=Trophe... 638 0.0 UniRef50_Q6KHI4 Topoisomerase IV subunit A n=1 Tax=Mycoplasma mo... 634 e-180 UniRef50_A5IXX2 Topoisomerase IV subunit A n=2 Tax=Mycoplasma Re... 629 e-179 UniRef50_B3PLT5 Topoiosmerase IV subunit A n=1 Tax=Mycoplasma ar... 628 e-178 UniRef50_O52166 Topoisomerase IV subunit n=2 Tax=Mycoplasma homi... 625 e-177 UniRef50_C5J6X2 Topoisomerase IV subunit A n=1 Tax=Mycoplasma co... 620 e-176 UniRef50_Q57532 Mle gyrA intein n=207 Tax=cellular organisms Rep... 618 e-175 UniRef50_Q4A6Z3 Topoisomerase IV subunit A n=1 Tax=Mycoplasma sy... 609 e-173 UniRef50_A2BND1 DNA gyrase/topoisomerase IV, subunit A n=7 Tax=P... 607 e-172 UniRef50_Q4A8X9 Topoisomerase IV subunit A n=3 Tax=Mycoplasma hy... 606 e-171 UniRef50_P75352 DNA topoisomerase 4 subunit A n=2 Tax=Mycoplasma... 606 e-171 UniRef50_C6WIH8 DNA topoisomerase (ATP-hydrolyzing) n=15 Tax=Act... 605 e-171 UniRef50_C7H694 DNA gyrase subunit A n=11 Tax=Bacteria RepID=C7H... 601 e-170 UniRef50_A7VBP9 Putative uncharacterized protein n=2 Tax=Clostri... 595 e-168 UniRef50_A6TSS8 DNA topoisomerase (ATP-hydrolyzing) n=7 Tax=Clos... 563 e-158 UniRef50_A3VFM2 DNA topoisomerase IV, A subunit n=11 Tax=Alphapr... 553 e-155 UniRef50_B1BBK7 DNA topoisomerase n=5 Tax=root RepID=B1BBK7_CLOBO 543 e-153 UniRef50_B9SK06 DNA gyrase subunit A, chloroplast/mitochondrial,... 540 e-152 UniRef50_A7AVY4 DNA gyrase A subunit, putative n=5 Tax=cellular ... 520 e-145 UniRef50_UPI0001976864 DNA gyrase/topoisomerase IV, subunit A n=... 517 e-145 UniRef50_C0QRN3 DNA gyrase subunit A n=9 Tax=cellular organisms ... 516 e-144 UniRef50_A4T3N2 DNA gyrase/topoisomerase IV, subunit A n=6 Tax=M... 501 e-140 UniRef50_Q4N468 DNA gyrase subunit A, putative n=2 Tax=Theileria... 451 e-125 UniRef50_A5K033 DNA GyrAse a-subunit, putative n=2 Tax=Plasmodiu... 444 e-123 UniRef50_B3LCM1 Dna gyrase a-subunit, putative n=1 Tax=Plasmodiu... 440 e-121 UniRef50_Q8I0X3 DNA gyrase subunit A;evidence=inferred from dire... 428 e-118 UniRef50_D1N6B5 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Bact... 410 e-112 UniRef50_C9RLW5 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Fibr... 398 e-109 UniRef50_D0HVU0 Topoisomerase IV subunit A n=3 Tax=Vibrio RepID=... 388 e-106 UniRef50_B1ZME1 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Opit... 384 e-105 UniRef50_B9XEN7 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=bact... 382 e-104 UniRef50_A4CLF9 DNA topoisomerase IV subunit A n=21 Tax=Bacteria... 378 e-103 UniRef50_D1QVZ0 DNA topoisomerase 4 subunit A n=2 Tax=Prevotella... 376 e-102 UniRef50_A6DRS7 DNA topoisomerase IV subunit A n=1 Tax=Lentispha... 366 1e-99 UniRef50_C3JAA3 DNA gyrase subunit A n=3 Tax=Bacteria RepID=C3JA... 365 3e-99 UniRef50_Q73KU9 Topoisomerase IV, A subunit, putative n=2 Tax=Tr... 364 7e-99 UniRef50_B4D1N9 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Chth... 362 3e-98 UniRef50_Q1NV80 DNA gyrase/topoisomerase IV, subunit A n=4 Tax=D... 360 1e-97 UniRef50_C6XSV0 DNA topoisomerase (ATP-hydrolyzing) n=61 Tax=Bac... 359 2e-97 UniRef50_D2QEJ6 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Bact... 358 7e-97 UniRef50_C3GSY0 DNA gyrase subunit A n=3 Tax=Bacillus thuringien... 356 1e-96 UniRef50_P34030 DNA gyrase subunit A (Fragment) n=704 Tax=Bacter... 351 5e-95 UniRef50_A7ANB1 DNA topoisomerase 2 n=3 Tax=Piroplasmida RepID=A... 347 1e-93 UniRef50_B9PK68 DNA topoisomerase 2 n=3 Tax=Toxoplasma gondii Re... 342 4e-92 UniRef50_P41001 DNA topoisomerase 2 n=10 Tax=Eukaryota RepID=TOP... 341 8e-92 UniRef50_B7XIW3 DNA topoisomerase 2 n=1 Tax=Enterocytozoon biene... 340 2e-91 UniRef50_C9S837 DNA topoisomerase 2 n=2 Tax=Sordariomycetes RepI... 339 3e-91 UniRef50_O51066 DNA topoisomerase 4 subunit A n=20 Tax=Borrelia ... 338 7e-91 UniRef50_Q0QCM0 GyrA (Fragment) n=297 Tax=Bacteria RepID=Q0QCM0_... 336 2e-90 UniRef50_D0NA12 DNA topoisomerase 2 n=1 Tax=Phytophthora infesta... 336 2e-90 UniRef50_Q9Y8G8 DNA topoisomerase 2 n=79 Tax=cellular organisms ... 336 3e-90 UniRef50_P11388 DNA topoisomerase 2-alpha n=47 Tax=Eukaryota Rep... 333 2e-89 UniRef50_A5E7X7 DNA topoisomerase 2 n=4 Tax=Saccharomycetaceae R... 332 3e-89 UniRef50_Q02880 DNA topoisomerase 2-beta n=175 Tax=Eukaryota Rep... 332 3e-89 UniRef50_D1ZCL6 DNA topoisomerase 2 n=6 Tax=Sordariomyceta RepID... 330 1e-88 UniRef50_Q4RIW2 DNA topoisomerase 2 (Fragment) n=1 Tax=Tetraodon... 329 2e-88 UniRef50_Q6PUA3 DNA topoisomerase 2 n=4 Tax=Tetrahymena thermoph... 329 3e-88 UniRef50_C1E5N4 DNA topoisomerase 2 n=1 Tax=Micromonas sp. RCC29... 329 3e-88 UniRef50_Q8SS63 DNA topoisomerase 2 n=1 Tax=Encephalitozoon cuni... 328 4e-88 UniRef50_D2UZM0 DNA topoisomerase II n=1 Tax=Naegleria gruberi R... 327 6e-88 UniRef50_B2ZYK7 Type IIA topoisomerase n=1 Tax=Ralstonia phage R... 327 1e-87 UniRef50_O41065 A583L protein n=7 Tax=Chlorovirus RepID=O41065_P... 325 5e-87 UniRef50_Q3QZ99 DNA gyrase C-terminal repeat, beta-propeller n=3... 322 2e-86 UniRef50_D2V5K5 DNA topoisomerase II n=1 Tax=Naegleria gruberi R... 321 4e-86 UniRef50_A8PTE9 DNA topoisomerase 2 n=1 Tax=Malassezia globosa C... 321 1e-85 UniRef50_P06786 DNA topoisomerase 2 n=27 Tax=Fungi/Metazoa group... 320 2e-85 UniRef50_B6K4K4 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces ... 319 3e-85 UniRef50_P08096 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces ... 319 3e-85 UniRef50_Q7YZS4 DNA topoisomerase 2 n=1 Tax=Physarum polycephalu... 319 3e-85 UniRef50_A7TEE2 DNA topoisomerase 2 n=1 Tax=Vanderwaltozyma poly... 315 4e-84 UniRef50_A4HGT2 DNA topoisomerase 2 n=11 Tax=Trypanosomatidae Re... 314 8e-84 UniRef50_C4PNH1 DNA gyrase subunit A n=8 Tax=Chlamydia trachomat... 312 5e-83 UniRef50_C3YYJ6 Putative uncharacterized protein n=1 Tax=Branchi... 311 5e-83 UniRef50_B0EP10 DNA topoisomerase 2 n=3 Tax=Entamoeba RepID=B0EP... 311 9e-83 UniRef50_Q04PE8 DNA topoisomerase (ATP-hydrolyzing), subunit A n... 311 1e-82 UniRef50_P34534 Putative DNA topoisomerase 2, mitochondrial n=5 ... 309 2e-82 UniRef50_Q5CQG8 DNA topoisomerase 2 n=4 Tax=Apicomplexa RepID=Q5... 309 2e-82 UniRef50_B8C981 DNA topoisomerase 2 (Fragment) n=1 Tax=Thalassio... 307 7e-82 UniRef50_C4UA00 DNA topoisomerase 4 subunit A n=9 Tax=Bacteria R... 307 1e-81 UniRef50_P90520 DNA topoisomerase 2, mitochondrial n=1 Tax=Dicty... 305 4e-81 UniRef50_UPI000194EBBC PREDICTED: similar to putative DNA gyrase... 305 5e-81 UniRef50_B7G2K9 DNA topoisomerase 2 (Fragment) n=1 Tax=Phaeodact... 302 3e-80 UniRef50_C5KAQ6 DNA topoisomerase 2 n=1 Tax=Perkinsus marinus AT... 302 3e-80 UniRef50_Q5KSK9 DNA topoisomerase 2 n=5 Tax=Basidiomycota RepID=... 301 8e-80 UniRef50_D0MV61 DNA topoisomerase 2 n=2 Tax=Eukaryota RepID=D0MV... 301 8e-80 UniRef50_P30182 DNA topoisomerase 2 n=6 Tax=Eukaryota RepID=TOP2... 301 9e-80 UniRef50_B3H4G2 DNA topoisomerase 2 n=14 Tax=Magnoliophyta RepID... 301 1e-79 UniRef50_A0C0L0 DNA topoisomerase 2 n=3 Tax=Paramecium tetraurel... 299 3e-79 UniRef50_C7U0P4 DNA topoisomerase II n=2 Tax=unclassified Phycod... 297 8e-79 UniRef50_Q252N7 DNA gyrase subunit A n=9 Tax=Chlamydiales RepID=... 295 4e-78 UniRef50_UPI0001906031 DNA topoisomerase IV subunit A n=2 Tax=Rh... 294 6e-78 UniRef50_A8Q6X4 DNA topoisomerase 2 n=1 Tax=Brugia malayi RepID=... 291 6e-77 UniRef50_Q6WHM1 Topoisomerase II small subunit n=1 Tax=Vibrio ph... 290 2e-76 UniRef50_Q27537 Chromosome instability 4 n=3 Tax=Chromadorea Rep... 290 2e-76 UniRef50_C4MZZ9 Gp52 topoisomerase II, medium subunit n=2 Tax=un... 287 1e-75 UniRef50_O24308 DNA topoisomerase 2 n=3 Tax=fabids RepID=TOP2_PEA 286 2e-75 UniRef50_UPI00016B2480 DNA gyrase subunit A n=1 Tax=candidate di... 285 5e-75 UniRef50_UPI0001924D0A PREDICTED: similar to DNA topoisomerase 2... 284 8e-75 UniRef50_P27570 DNA topoisomerase 2 n=15 Tax=Trypanosomatidae Re... 283 1e-74 UniRef50_Q76Y98 Gp52 topoisomerase II medium subunit n=1 Tax=Aer... 281 8e-74 UniRef50_P07065 DNA topoisomerase medium subunit n=8 Tax=T4-like... 273 2e-71 UniRef50_Q55BP5 Probable DNA topoisomerase 2 n=1 Tax=Dictyosteli... 272 4e-71 UniRef50_A0BK44 Chromosome undetermined scaffold_111, whole geno... 271 5e-71 Sequences not found previously or not previously below threshold: >UniRef50_Q9HUK1 DNA topoisomerase 4 subunit A n=318 Tax=Proteobacteria RepID=PARC_PSEAE Length = 754 Score = 930 bits (2405), Expect = 0.0, Method: Composition-based stats. Identities = 507/744 (68%), Positives = 612/744 (82%), Gaps = 2/744 (0%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + ER +L EFTE AYLNYSMYVIMDRALP IGDGLKPVQRRIVYAMSELGL+A +K KK Sbjct: 10 EGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADSKHKK 69 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SARTVGDVLGK+HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE Sbjct: 70 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 129 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +RLS+YSE+LLSELGQGT DWVPNFDGTL EP +LPARLPN+LLNGTTGIAVGMATD+PP Sbjct: 130 ARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIAVGMATDVPP 189 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HNLREVA A + L+DQP T+ +L + V GPD+PTEAEIIT RA+++K+YE GRGSVRMR Sbjct: 190 HNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYETGRGSVRMR 249 Query: 243 AVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 AV++ EDG +VI ALPHQVSG++VLEQIA QM+ KKLPMV DLRDESDHENPTR+VI+PR Sbjct: 250 AVYRVEDGDIVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDESDHENPTRIVIIPR 309 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRL 362 SNRVD++++M HLFATTDLE SYR+NLN+IGLDG+P VK+L ++LSEWL FR TVRRRL Sbjct: 310 SNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPQVKDLRQLLSEWLQFRIGTVRRRL 369 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKL 422 +RL+KV +RLH+L+GLL+AFLN+DEVI IIR ED+PK LM RF L+E QA+ IL+ +L Sbjct: 370 QFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAVLMERFELSEVQADYILDTRL 429 Query: 423 RHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQE 482 R LA+LEEMKIRGEQ EL KE+ +LQ +L SE K+ L+++EL DA+ YGDDRRSP+ Sbjct: 430 RQLARLEEMKIRGEQEELLKEQKRLQTLLGSEAKLKKLVREELIKDAETYGDDRRSPIVA 489 Query: 483 REEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQP 542 R EA+A+SE +++P+EPVT+VLS+ GWVR AKGHDIDA GL+YKAGD FKAA G+SNQ Sbjct: 490 RAEARALSETELMPTEPVTVVLSEKGWVRCAKGHDIDAAGLSYKAGDGFKAAAPGRSNQY 549 Query: 543 VVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGY 602 VF+DSTGRSY++ +LPSARGQGEPL+G+LT PPGA+ + +L+ DD ++ASDAGY Sbjct: 550 AVFIDSTGRSYSLPAHSLPSARGQGEPLSGRLTPPPGASFECVLLPDDDALFVIASDAGY 609 Query: 603 GFVCTFNDLVARNRAGKALITLPENAHVMPPVVIED-ASDMLLAITQAGRMLMFPVSDLP 661 GFV DL A+N+AGKAL++LP + V+ P + D D L A+T GR+L+F VSDLP Sbjct: 610 GFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQDWLAAVTTEGRLLLFKVSDLP 669 Query: 662 QLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGER 721 QL KGKGNKII IP A E+ L L VLP +TL + GKR + L+ ++L+ GER Sbjct: 670 QLGKGKGNKIIGIPGERVASREEYLTDLAVLPAGATLVLQAGKRTLSLKGDDLEHYKGER 729 Query: 722 GRRG-TLMRGLQRIDRVEIDSPRR 744 GRRG L RG QR+D + +D P + Sbjct: 730 GRRGNKLPRGFQRVDSLLVDIPPQ 753 >UniRef50_P43702 DNA topoisomerase 4 subunit A n=115 Tax=Bacteria RepID=PARC_HAEIN Length = 747 Score = 905 bits (2338), Expect = 0.0, Method: Composition-based stats. Identities = 521/741 (70%), Positives = 625/741 (84%), Gaps = 1/741 (0%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + E++ L FTE AYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNA+AK+KK Sbjct: 7 EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SARTVGDVLGK+HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE Sbjct: 67 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 SRLSK SE+LL+ELGQGT D+ PNFDGTL EP+ LPARLP+ILLNGTTGIAVGMATDIPP Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HN+ E+A AA+ L+D PK LD +L+IVQGPD+PTEAEII+ ++EIRKIYE GRGS++MR Sbjct: 187 HNINEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246 Query: 243 AVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 A WKKEDG ++ISALPHQ S ++V+ QIA QM KKLPM++D+RDE+DHENP R+V+VPR Sbjct: 247 ATWKKEDGEIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIRIVLVPR 306 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRL 362 SNRVD D +M HLFATTDLEKSYR+N+NMIGLD +PAVK LLEIL+EWL FRR TV RRL Sbjct: 307 SNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRTTVTRRL 366 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKL 422 YRL+KVL RLHILEGL++AFLNIDEVIEIIR+ED+PK LM+RF L++ QA+AIL L+L Sbjct: 367 QYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDEQADAILNLRL 426 Query: 423 RHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQE 482 RHLAKLEE +++ EQ ELEKER L+ IL SER++N L+KKE+Q DA+ Y + R S L E Sbjct: 427 RHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYANPRMSQLVE 486 Query: 483 REEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQP 542 REEAK +SE DM P+EPVT++LS+MGWVR AKGHDID L+YKAGDS+ A GKSNQ Sbjct: 487 REEAKMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSYLAHACGKSNQA 546 Query: 543 VVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGY 602 VVF+DSTGRSYA+DP++LPSAR QGEPLTGKL LP GAT+++++M S+ Q+LLMASDAGY Sbjct: 547 VVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQQELLMASDAGY 606 Query: 603 GFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQ 662 GF+C F DL+ARN+AGKALI+LPENA V+ P + +++ +++AIT AGRML+FP DLP Sbjct: 607 GFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPV 666 Query: 663 LSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERG 722 LSKGKGNK+I IP+A A + L +L ++ Q++L + GKRKI L+PE+LQK ERG Sbjct: 667 LSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYSGKRKIVLKPEDLQKFRAERG 726 Query: 723 RRG-TLMRGLQRIDRVEIDSP 742 R+G TL RGL + + P Sbjct: 727 RKGSTLPRGLHTNLEIMVIEP 747 >UniRef50_P05653 DNA gyrase subunit A n=10 Tax=cellular organisms RepID=GYRA_BACSU Length = 821 Score = 848 bits (2192), Expect = 0.0, Method: Composition-based stats. Identities = 258/770 (33%), Positives = 435/770 (56%), Gaps = 38/770 (4%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + + + ++L+Y+M VI+ RALP + DGLKPV RRI+YAM++LG+ + +KKS Sbjct: 8 QVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKS 67 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VG+V+GKYHPHGDSA YE+MV MAQ F+YRY LVDG GN+G+ D S AAMRYTE+ Sbjct: 68 ARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDG-DSAAAMRYTEA 126 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 R+SK S +L ++ + T D+ N+DG+ +EP ++P+R PN+L+NG GIAVGMAT+IPPH Sbjct: 127 RMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPH 186 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 L E+ +A+ + P T+ +L++++ GPD+PT +I+ R+ IRK YE+GRGS+ +RA Sbjct: 187 QLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRA 245 Query: 244 VWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + E ++++ LP+QV+ A+++E+IA +R+KK+ + DLRDESD R+V Sbjct: 246 KAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTG-MRIV 304 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 I R + + + ++N+L+ T L+ S+ INL + +DG+P V L + L +L ++ + Sbjct: 305 IEIRRD-ANANVILNNLYKQTALQTSFGINL-LALVDGQPKVLTLKQCLEHYLDHQKVVI 362 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAE 415 RRR Y L K R HILEGL VA ++D VI +IRN + L+ +F LTE QA+ Sbjct: 363 RRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQ 422 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 AIL+++L+ L LE KI E L K +L+ ILA+E K+ ++++EL + + D+ Sbjct: 423 AILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDE 482 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS--------AKGHDIDAPGLNYKA 527 RR+ + + + + D++ E + + L+ G+V+ K G+ Sbjct: 483 RRTEIVTSG-LETIEDEDLIERENIVVTLTHNGYVKRLPASTYRSQKRGGKGVQGMGTNE 541 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS--ARGQGEPLTGKLTLPPGATVDHM 585 D + + ++ ++F + G+ Y +P +G P+ L + G ++ + Sbjct: 542 DDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIINLLEVEKGEWINAI 601 Query: 586 LMESD---DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM 642 + ++ + L + G + + G ++L E+ +M V + D + Sbjct: 602 IPVTEFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALSLREDDELMG-VRLTDGTKQ 660 Query: 643 LLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 ++ T+ G ++ FP +D+ ++ + G K I + +D + + +L +S + I Sbjct: 661 IIIGTKNGLLIRFPETDVREMGRTAAGVKGITLT------DDDVVVGMEILEEESHVLIV 714 Query: 702 VGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K K P E + T RG +G ++ + + +A+ G+ + Sbjct: 715 TEKGYGKRTPAEEYR-TQSRGGKG--LKTAKITENNGQLVAVKATKGEED 761 Score = 73.0 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 65/193 (33%), Gaps = 14/193 (7%) Query: 505 SQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPI 558 ++ G + L+ + D + ++ G Sbjct: 617 TKHGVSKRTSLSQFANIRNNGLIALSLREDDELMGVRLTDGTKQIIIGTKNGLLIRFPET 676 Query: 559 TLPSARGQGEPLTGK--LTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNR 616 + R G G +TL V M + ++ +L+ ++ GYG + ++R Sbjct: 677 DV---REMGRTAAGVKGITLTDDDVVVGMEILEEESHVLIVTEKGYGKRTPAEEYRTQSR 733 Query: 617 AGK--ALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIIN 673 GK + EN + V + L+ IT +G ++ ++D+ + +G ++I Sbjct: 734 GGKGLKTAKITENNGQLVAVKATKGEEDLMIITASGVLIRMDINDISITGRVTQGVRLIR 793 Query: 674 IPSAEAARGEDGL 686 + E + Sbjct: 794 MAEEEHVATVALV 806 >UniRef50_C8NBL7 Topoisomerase IV subunit A n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NBL7_9GAMM Length = 749 Score = 845 bits (2184), Expect = 0.0, Method: Composition-based stats. Identities = 402/737 (54%), Positives = 525/737 (71%), Gaps = 1/737 (0%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + E+ L F E AYL+YSMYVI+DRALP IGDGLKPVQRRI+YAMSELGL+ +K KKS Sbjct: 5 LTEQQPLAGFVEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLSHQSKHKKS 64 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 ARTVGDV+GKYHPHGDSACYEAMVLMAQ F+YRYPLVDGQGNWG+ DDPKSFAAMRYTES Sbjct: 65 ARTVGDVIGKYHPHGDSACYEAMVLMAQDFAYRYPLVDGQGNWGSADDPKSFAAMRYTES 124 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 RL+ Y++ LL+EL QGT +WV NFDGTLQEP LPARLPNILLNG +GIAVGMAT++ PH Sbjct: 125 RLTGYAKTLLAELEQGTVEWVANFDGTLQEPARLPARLPNILLNGGSGIAVGMATNLLPH 184 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL EV A ALI P T D L+ + PD+PT E++++R EI +Y GRG+VR+RA Sbjct: 185 NLGEVVAACRALIADPLLTDDALMQYIPAPDFPTGGELVSAREEIAALYRTGRGAVRLRA 244 Query: 244 VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 W EDG ++I LP+QVSG++V EQIA QM+ KKL ++DLRDESDHE+P RLV+VPRS Sbjct: 245 TWHLEDGNIIIDQLPYQVSGSKVQEQIAKQMQAKKLAWLEDLRDESDHEHPIRLVLVPRS 304 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLN 363 NRVD +++M HLFATTDLEK Y +NMIGLDGRP VKNL +IL EWLV+R +TVRRRLN Sbjct: 305 NRVDHERLMQHLFATTDLEKRYSAQMNMIGLDGRPQVKNLGQILREWLVYREETVRRRLN 364 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLR 423 +RL V +RLHIL+GLL+A+LN+DE+I IIR EDEP+P LM+ F L+E QAEAIL +LR Sbjct: 365 HRLHAVNERLHILQGLLIAYLNLDEIIRIIRTEDEPRPVLMATFALSEAQAEAILNTRLR 424 Query: 424 HLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQER 483 HLA+LEE++IR EQ L E+ L +L S ++ L+ EL ADA YGD RR+ + ER Sbjct: 425 HLARLEEIQIRAEQEALAAEQQHLHELLQSRERLLTLIADELAADAATYGDARRTVIIER 484 Query: 484 EEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPV 543 E A A+ E ++ PSE VT++LS+MGW+R KGH ID L YK GD++ + G+SNQ Sbjct: 485 EAAVALDETELTPSEAVTLILSKMGWIRGGKGHAIDGAALTYKNGDAYLTQISGRSNQQA 544 Query: 544 VFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYG 603 + GRSY + LPSAR GEPL+ +++ A + + +++ L+A+D GYG Sbjct: 545 CLLADNGRSYTLALHGLPSARSYGEPLSSSMSIDASAHIIAAAIIEPERRYLIAADNGYG 604 Query: 604 FVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQL 663 F+ +L ++ ++GK LIT + + + D +LAI+ GR+ + P ++P+L Sbjct: 605 FLIPGAELTSKTKSGKTLITPGGASRAITLQALPDGETDILAISNEGRVALIPAEEIPEL 664 Query: 664 SKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGR 723 +KGKG++ + I LA + +P +T+H GK+K+ +R E + RG Sbjct: 665 AKGKGSQTLAIAKKTYDADGIRLAHILAVPRGRDITLHSGKQKLTIRANEREHYLTPRGH 724 Query: 724 RGTLMR-GLQRIDRVEI 739 +G + +RID +E+ Sbjct: 725 KGNWLPKNYRRIDHIEL 741 >UniRef50_A0L827 DNA topoisomerase IV subunit A n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L827_MAGSM Length = 754 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 292/737 (39%), Positives = 450/737 (61%), Gaps = 21/737 (2%) Query: 1 MSDMAERL---ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 57 MS+ E++ L E E+ YL Y++ I+ R+LP + DGLKPV RRI++AM L L+ + Sbjct: 1 MSNTFEQIDPCNLREELESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALRLDPN 60 Query: 58 AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 117 + +KKSAR VGDV+GKYHPHGD A Y+AMV +AQ F+ RYPLVDGQGN+G D S AA Sbjct: 61 SPYKKSARVVGDVIGKYHPHGDQAAYDAMVRLAQEFAVRYPLVDGQGNFGNIDG-DSAAA 119 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 MRYTE+RL+ ++ LL +L T D++P +DG+++EP +LPAR PN+L NG++GIAVGM+ Sbjct: 120 MRYTEARLTSVAKALLEDLEMDTVDFMPTYDGSMEEPVVLPARFPNLLANGSSGIAVGMS 179 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T++PPHN+ E+ A + LI +P ++++L+ + PD+PT ++ AE ++Y GRG Sbjct: 180 TNVPPHNVGEILDACLLLISKPNCSIEELMQHLPAPDFPTGGILMADHAERLEVYSEGRG 239 Query: 238 SVRMRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHE 292 S+R+RA W ED +V++ +P+QV +R++E+IA + ++K P + ++RDESD Sbjct: 240 SLRLRARWAVEDLGRGLWQIVVTEIPYQVQKSRLIERIAQLVIDRKCPFLTNVRDESDEN 299 Query: 293 NPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLV 352 R+V+ PR+ +D + +M+ LF +DLE NLN+I RP V +L IL WL Sbjct: 300 --LRIVLEPRARTLDPELIMHFLFKHSDLESRASFNLNVIVGGHRPEVLDLKGILRHWLD 357 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTET 412 R RR +Y L+K+ +RLH+L+ L+ LNIDEVIEII+ D+P P LM+RF L E Sbjct: 358 HRFVVHTRRASYELKKIRERLHLLQAFLIVHLNIDEVIEIIKKNDDPAPVLMARFSLDEI 417 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QAEAIL ++LR+L KLEEMKIR E EL+ D L+ +LA ++ M ++ EL+A + + Sbjct: 418 QAEAILNMRLRNLRKLEEMKIRKEMEELQARADLLEAMLADDKIMWKAIRDELKATRKEF 477 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFK 532 D RR+ + E + D + EP++++LSQMGWV++ KGHD++ L +K D Sbjct: 478 ADVRRTEICGSVEDVHVRPEDFVEKEPISVILSQMGWVKANKGHDVNTEVLRFKGDDLLL 537 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQ 592 + +NQ V F+ +G+ + I LP+ +G GEPLT L G V L +Q Sbjct: 538 RSFPCYTNQSVSFISQSGKLFTILASNLPAGKGFGEPLTSMFDLDGGDRVLWALPVDPEQ 597 Query: 593 KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRM 652 + L+ + G GF DL+A R GK LITL + ++ + +I+++ R+ Sbjct: 598 EYLLITRLGQGFRVKGVDLIANQRKGKQLITLKSGDQPLHLHPVKGP--WVGSISRSRRL 655 Query: 653 LMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPE 712 L+FP+ P ++KGKG ++ + + ++ + + + + GK+ + Sbjct: 656 LIFPIEQFPLMAKGKGVRVQKLGA------DEVVVDVTTFTDEEGFVLDSGKKTKHVT-- 707 Query: 713 ELQKVTGERGRRGTLMR 729 + + G R RG ++ Sbjct: 708 DYDQWHGNRAGRGAMLP 724 >UniRef50_Q0W7S4 Type II DNA topoisomerase II (Gyrase), subunit A n=17 Tax=cellular organisms RepID=Q0W7S4_UNCMA Length = 826 Score = 838 bits (2165), Expect = 0.0, Method: Composition-based stats. Identities = 262/742 (35%), Positives = 414/742 (55%), Gaps = 37/742 (4%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 + + E + +Y++Y+M VI+ RALP + DGLKPV RR +Y M ELG +KKSAR V Sbjct: 24 VQIEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRCLYGMYELGNTHDKPYKKSARVV 83 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 GDV+GKYHPHGD+A Y+ +V MAQ FS RY LVDGQGN+G+ D AAMRYTE RL + Sbjct: 84 GDVMGKYHPHGDAAIYDTIVRMAQDFSLRYTLVDGQGNFGSIDGDG-AAAMRYTEVRLER 142 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 +E +L++L + T D+ PNFD TL+EP +LPARLPN+L+NG++GIAVGMAT+IPPHNL E Sbjct: 143 IAEEILADLDKETVDFAPNFDETLKEPVVLPARLPNLLINGSSGIAVGMATNIPPHNLGE 202 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 + IA+ID P+ +LL+ V+GPD+PT I + I++ Y GRGS+RMRA + Sbjct: 203 IVDGTIAVIDNPEIEPIELLNYVKGPDFPTAGFI-YGKEGIKEAYLTGRGSIRMRAKAEI 261 Query: 248 EDGA----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 D ++++ +P+ V+ AR++E IA +++KK+ + DLRDESD + ++ + + Sbjct: 262 VDENGKMSIIVTEIPYMVNKARLIESIADLVKDKKIEGISDLRDESDRDGMRIVIELKK- 320 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLN 363 + + ++N LF T +E ++ +N N+ +D P +L E + ++ R++ V RR Sbjct: 321 -AANANVILNQLFKHTQMESTFGVN-NIALVDNTPMTLSLKETIGYFIKHRQEVVTRRSQ 378 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEAILEL 420 + L+K R HIL GLL+A NID+ + IIR N DE K LM ++GL++ Q+ AIL++ Sbjct: 379 FELKKAQAREHILAGLLIALTNIDDFVRIIRGSANADEAKATLMEKYGLSDEQSRAILDM 438 Query: 421 KLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPL 480 +L L LE KI E+++L KE L +LAS + + +++K EL YGD+RR+ + Sbjct: 439 RLARLTALERQKIDDERADLIKEIAHLNEVLASPQMVLDIIKAELLDMKAKYGDERRTKI 498 Query: 481 QEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS--------AKGHDIDAPGLNYKAGDSFK 532 E A + + D++P E V + +S G+++ + + G+ K D Sbjct: 499 VES--AGEIVDEDLIPVENVVVTISNTGYIKRMPVDTYRTQRRGGVGIVGMETKEEDFVV 556 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLP---SARGQGEPLTGKLTLPPGATVDHMLM-- 587 ++ ++F + G+ Y++ +P S + +G+ + + + PG ++ M+ Sbjct: 557 DLFVASTHDNILFFSNKGKVYSLKVYEIPPAASRQARGKAIINLINIEPGEAINAMIPIK 616 Query: 588 -ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI 646 D L+M + G + G I L ++ V + + S +L Sbjct: 617 TFDDQHFLVMCTREGTIKKTALSAFQNIRSTGIIAIGLESGDELIS-VKMTNGSQEVLIA 675 Query: 647 TQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKR 705 T+ G+ F S++ + + G I + + +A V P QS LTI Sbjct: 676 TRNGKCNRFSESEVRTMGRPAMGVIGIRLTENDKV-----IAMEIVSPGQSVLTICENG- 729 Query: 706 KIKLRPEELQKVTGERGRRGTL 727 K P E RG +G + Sbjct: 730 FGKRTPIEEYT-AHHRGGQGMI 750 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 81/221 (36%), Gaps = 16/221 (7%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKA 533 ++ E AM + ++ ++ G ++ + ++GD + Sbjct: 603 IEPGEAINAMIPIKTFDDQHFLVMCTREGTIKKTALSAFQNIRSTGIIAIGLESGDELIS 662 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLT--LPPGATVDHMLMESDD 591 +Q V+ G+ + R G P G + L V M + S Sbjct: 663 VKMTNGSQEVLIATRNGKCNRFSESEV---RTMGRPAMGVIGIRLTENDKVIAMEIVSPG 719 Query: 592 QKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE---NAHVMPPVVIEDASDMLLAITQ 648 Q +L + G+G + A +R G+ +I + N V+ + + D ++ ++ Sbjct: 720 QSVLTICENGFGKRTPIEEYTAHHRGGQGMINIKTTLRNGAVVAVISVMP-DDQIVIASK 778 Query: 649 AGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQ 688 G M V+D+P++ + +G +++ + ++ L Sbjct: 779 EGMMTRMNVTDIPEIGRNTQGVRVMKMRPEDSVVAVARLVS 819 >UniRef50_C9KLW4 DNA gyrase, A subunit n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KLW4_9FIRM Length = 808 Score = 832 bits (2151), Expect = 0.0, Method: Composition-based stats. Identities = 259/766 (33%), Positives = 418/766 (54%), Gaps = 39/766 (5%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 + L +N+Y++Y+M VI+ RALP + DGLKPV RRI+YAM E G+ ++ +KKSAR V Sbjct: 11 VNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSNKPYKKSARIV 70 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 G+VLGKYHPHGDS+ Y+A+V MAQ FS RY L DG GN+G+ D AAMRYTE R+SK Sbjct: 71 GEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDGDP-AAAMRYTEVRMSK 129 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 +EL+L ++ + T D+ PN+D +L+EP++LPA+ P +L+NGT+GIAVGMAT+IPPHN+ E Sbjct: 130 IAELMLQDIDKETVDFTPNYDESLKEPEVLPAKFPQLLVNGTSGIAVGMATNIPPHNMCE 189 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 V + LID P T+D L+ +++GPD+PT I+ + IR+ Y GRG ++MRA + Sbjct: 190 VIDGTLMLIDHPDATIDDLMKVIKGPDFPTAGLIL-GQDGIRQAYTTGRGVIKMRANARI 248 Query: 248 E-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 E ++++ LP+QV+ AR++E+IA +R+K++ + L DESD R+VI R Sbjct: 249 ETLSNGKPRIIVTELPYQVNKARLVEKIAQLVRDKQIEGITALNDESDR-GGMRIVIDLR 307 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRL 362 + + + ++N L+ T L+ S+ + + + +DG+P + NL E+L ++ + D + RR Sbjct: 308 RD-ANANVILNQLYKHTQLQDSFGVIM-LALVDGKPKILNLKEVLHYYIAHQEDVITRRT 365 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQAEAILE 419 Y L+K R HILEGL +A ++D VI IR D + AL+S F L+E QA+AIL+ Sbjct: 366 RYDLKKAEARAHILEGLTIALDHLDAVITTIRESRTADIARAALISGFKLSEKQAQAILD 425 Query: 420 LKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSP 479 L+L+ L LE KI E E+ K ++ + ILA E ++ ++K EL+A +GD RR+ Sbjct: 426 LRLQRLTGLEREKIEEEYQEVLKAIEEYKAILADEGRILAIIKDELKAVKAKFGDARRTR 485 Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWV--------RSAKGHDIDAPGLNYKAGDSF 531 L + + D++ E V I L+ ++ R G+ K D Sbjct: 486 L--TVDTSEIDVEDLIAEEDVVITLTHNNYIKRMALDTYRRQNRGGKGIKGMPTKEKDFV 543 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHMLMES 589 + + ++ ++F + GR Y + + A +G + L L + ++ Sbjct: 544 ENLLITTTHHTILFFTNRGRVYHLKAYEIAEASRAAKGTAIINLLQLEKDEKITAVIQVK 603 Query: 590 ---DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI 646 D L MA+ G + + ++ G I L ++ ++ + DM+L Sbjct: 604 GFNPDAYLFMATKKGIVKKTSLVEFKNLHKGGLNAINLDDDDELIGVKFTDGERDMILG- 662 Query: 647 TQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKR 705 T+ G ++F D+ + + +G K I++ + G D L+ P + + + Sbjct: 663 TKWGMAIVFGEDDVRAMGRAARGVKGISLNDGDEVIGMDTLS------PNAEVLTVTAEG 716 Query: 706 KIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K + + R G + L+ ++ R D E Sbjct: 717 YGKRTETSEYR---AQNRGGKGLINLKVTEKTGDVIGLRVVHPDQE 759 Score = 68.0 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 85/228 (37%), Gaps = 22/228 (9%) Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKG------HDIDAPGLNYKAGDSFK 532 L++ E+ A+ + + + ++ G V+ H +N D Sbjct: 589 QLEKDEKITAVIQVKGFNPDAYLFMATKKGIVKKTSLVEFKNLHKGGLNAINLDDDDELI 648 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLMESD 590 + ++ G + + R G G ++L G V M S Sbjct: 649 GVKFTDGERDMILGTKWGMAIVFGEDDV---RAMGRAARGVKGISLNDGDEVIGMDTLSP 705 Query: 591 DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP---ENAHVMPPVVIEDASDMLLAIT 647 + ++L + GYG ++ A+NR GK LI L + V+ V+ L+ IT Sbjct: 706 NAEVLTVTAEGYGKRTETSEYRAQNRGGKGLINLKVTEKTGDVIGLRVVHP-DQELMLIT 764 Query: 648 QAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPP 694 G ++ +SD+ +S+ +G K+++ D +A + V+ Sbjct: 765 TEGIVIRTNISDISVISRNTQGVKLMSTGE------NDIVASMAVMDQ 806 >UniRef50_P0C0R0 DNA gyrase subunit A n=296 Tax=cellular organisms RepID=GYRA_STAES Length = 893 Score = 832 bits (2150), Expect = 0.0, Method: Composition-based stats. Identities = 267/747 (35%), Positives = 414/747 (55%), Gaps = 34/747 (4%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 + ++L+Y+M VI+ RALP + DGLKPV RRI+Y ++E G+ +K Sbjct: 6 QSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYK 65 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VGDV+GKYHPHGDS+ YEAMV MAQ FSYRYPLVDGQGN+G+ D AAMRYT Sbjct: 66 KSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDG-AAAMRYT 124 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+R++K + LL ++ + T D++ N+DG +EP +LPAR PN+L+NG GIAVGMAT+IP Sbjct: 125 EARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIP 184 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNL EV ++L P T+++L++ +QGPD+PT ++ ++ IR+ YE GRGS++M Sbjct: 185 PHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAG-LVLGKSGIRRAYETGRGSIQM 243 Query: 242 RAVWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 R+ + E+ +V++ +P QV+ AR++E+IA +R+KK+ + DLRDE+ R Sbjct: 244 RSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVR 303 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 +VI R + + ++N+L+ T L+ S+ +N+ + ++GRP + NL E L +L ++ Sbjct: 304 VVIDVRKD-ANASVILNNLYKQTPLQTSFGVNM-IALVNGRPKLINLKEALIHYLEHQKT 361 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQ 413 VRRR Y L+K R HILEGL +A +IDE+I IR D K A L RF LTE Q Sbjct: 362 VVRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQ 421 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 A+AIL+++LR L LE KI E +EL + +L+ ILA E + L++ EL + +G Sbjct: 422 AQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFG 481 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAK--------GHDIDAPGLNY 525 D+RR+ +Q + + + D++P E + I LS +++ G+N Sbjct: 482 DERRTEIQ-LGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNT 540 Query: 526 KAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVD 583 D V ++ V+F + GR Y + +P S + +G P+ + L T+ Sbjct: 541 LDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETIS 600 Query: 584 HMLMESD----DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDA 639 M+ D + L+ A+ G + ++ N+ GK I E+ ++ + Sbjct: 601 TMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGN 660 Query: 640 SDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTL 698 D+L+ T ++ F S L L + G K I++ + G D + + Sbjct: 661 EDILIG-TAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVADS----ESEDEV 715 Query: 699 TIHVGKRKIKLRPEELQKVTGERGRRG 725 + K P + RG +G Sbjct: 716 LVVTENGYGKRTPVSEYR-LSNRGGKG 741 Score = 73.0 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 83/219 (37%), Gaps = 18/219 (8%) Query: 482 EREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAV 535 + + ++ D+ E + ++ G V+ + + +N+K D A Sbjct: 596 DETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVR 655 Query: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSA-RGQGEPLTGK--LTLPPGATVDH--MLMESD 590 N+ ++ G ++A S R G G ++L G TV + Sbjct: 656 LTTGNEDILI----GTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVADSES 711 Query: 591 DQKLLMASDAGYGFVCTFNDLVARNRAGKAL--ITLPENAHVMPPVVIEDASDMLLAITQ 648 + ++L+ ++ GYG ++ NR GK + T+ E + + + L+ +T Sbjct: 712 EDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIVCITTVTGEEDLMVVTN 771 Query: 649 AGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGL 686 AG ++ V D+ Q + G +++ + + + Sbjct: 772 AGVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKV 810 >UniRef50_Q5HJZ0 DNA gyrase subunit A n=200 Tax=Bacteria RepID=GYRA_STAAC Length = 887 Score = 822 bits (2124), Expect = 0.0, Method: Composition-based stats. Identities = 268/747 (35%), Positives = 407/747 (54%), Gaps = 34/747 (4%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 + ++L+Y+M VI+ RALP + DGLKPV RRI+Y ++E G+ +K Sbjct: 6 QSRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYK 65 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VGDV+GKYHPHGDS+ YEAMV MAQ FSYRYPLVDGQGN+G+ D AAMRYT Sbjct: 66 KSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDG-AAAMRYT 124 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+R++K + LL ++ + T D++ N+DG +EP +LPAR PN+L NG +GIAVGMAT+IP Sbjct: 125 EARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIP 184 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNL E+ ++L P ++ +L++ ++GPD+PT I+ ++ IR+ YE GRGS++M Sbjct: 185 PHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQM 243 Query: 242 RAVWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 R+ E+ +V++ +P QV+ AR++E+IA +R+KK+ + DLRDE+ R Sbjct: 244 RSRAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVR 303 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 +VI R + + ++N+L+ T L+ S+ +N+ + ++GRP + NL E L +L ++ Sbjct: 304 VVIDVRKD-ANASVILNNLYKQTPLQTSFGVNM-IALVNGRPKLINLKEALVHYLEHQKT 361 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQ 413 VRRR Y L K R HILEGL +A +IDE+I IR D K A L RF L+E Q Sbjct: 362 VVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQ 421 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 A+AIL+++LR L LE KI E +EL +L+ ILA E + L++ EL +G Sbjct: 422 AQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFG 481 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAK--------GHDIDAPGLNY 525 DDRR+ +Q + + D++P E + I LS +++ G+N Sbjct: 482 DDRRTEIQLGGFE-NLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNT 540 Query: 526 KAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVD 583 D V ++ V+F + GR Y + +P S + +G P+ + L + Sbjct: 541 LEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVIS 600 Query: 584 HMLMESD----DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDA 639 M+ D D L+ A+ G ++ NR GK I+ E+ ++ V + Sbjct: 601 TMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELI-AVRLTSG 659 Query: 640 SDMLLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTL 698 + +L T ++ FP S L L + G K I + + G D V + Sbjct: 660 QEDILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSV----DEV 715 Query: 699 TIHVGKRKIKLRPEELQKVTGERGRRG 725 + K P + RG +G Sbjct: 716 LVVTENGYGKRTPVNDYR-LSNRGGKG 741 Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 83/221 (37%), Gaps = 20/221 (9%) Query: 482 EREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAV 535 + + ++ D+ + + ++ G V+ + + ++++ D A Sbjct: 596 DEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVR 655 Query: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGK--LTLPPGATVDHMLMESDD 591 + ++ S I P + + G TG +TL G V + + + Sbjct: 656 LTSGQEDILIGTS-----HASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHAN 710 Query: 592 Q--KLLMASDAGYGFVCTFNDLVARNRAGKAL--ITLPENAHVMPPVVIEDASDMLLAIT 647 ++L+ ++ GYG ND NR GK + T+ E + + + L+ +T Sbjct: 711 SVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVT 770 Query: 648 QAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLA 687 AG ++ V+D+ Q + G ++I + + + Sbjct: 771 NAGVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 811 >UniRef50_C8WIN1 DNA gyrase, A subunit n=39 Tax=Bacteria RepID=C8WIN1_EGGLE Length = 932 Score = 821 bits (2121), Expect = 0.0, Method: Composition-based stats. Identities = 259/739 (35%), Positives = 409/739 (55%), Gaps = 37/739 (5%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 L + + ++L Y+M VI+ RALP + DGLKPV RRI+YAM+E G + KSARTVGD Sbjct: 91 LGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSARTVGD 150 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 V+GKYHPHGDSA Y+ MV +AQPFS R PLVDG GN+G+ D AAMRYTESRL K + Sbjct: 151 VIGKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDGDG-AAAMRYTESRLDKVA 209 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 LL +L + T D+ PN+D +L+EP +LPAR PN+L+NG+ GIAVGMAT+IPPHNL E Sbjct: 210 MELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNLGETI 269 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED 249 A ++D P T ++L+ + GPD+PT II + IR YE GRGS+ +RA K E+ Sbjct: 270 DATCLMLDNPDVTTEELMKALPGPDFPTGG-IIMGKKGIRDAYETGRGSLTVRAKCKVEE 328 Query: 250 G-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 G ++V++ +P+QV+ R+LE++ +R KKLP + ++ D +D ++ + + Sbjct: 329 GKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDLKK-- 386 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 364 V+N L+ T L+ + + + + +DG P V +L E+L ++ + + + RR Y Sbjct: 387 DAIPQVVLNKLYKHTQLQVGFGVIM-LSLVDGAPRVLSLKEMLHYYIAHQEEVIVRRTRY 445 Query: 365 RLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEAILELK 421 L K +R HILEGL++A NIDEVI IIR+ K A + RFGLT+ Q AILE++ Sbjct: 446 ELAKAEERAHILEGLIIALDNIDEVIHIIRSSQTDKEAAERMTERFGLTDKQTAAILEMR 505 Query: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQ 481 LR L LE KI E EL ++ + +L+ ++ +++++K+EL + +G RR+ L Sbjct: 506 LRRLTGLEHQKIEDELKELLEKIAYFKRVLSDDQLVHDIIKEELSEVKKKFGSPRRTLL- 564 Query: 482 EREEAKAMSEHDMLPSEPVTIVLSQMGWVRS--------AKGHDIDAPGLNYKAGDSFKA 533 E AK + D++ E + + +++ G+V+ K G+N K D + Sbjct: 565 -SEAAKDLDVEDLIAEESMVVTMTKAGYVKRLPVATYRQQKRGGKGMSGVNLKDNDYVEH 623 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLMESD- 590 ++ ++F + G+ Y + LP A +G + L L G T+ ++ D Sbjct: 624 LFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARGTAIVNLLPLEKGETISAVIATKDF 683 Query: 591 --DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQ 648 D+ L+ A++ G + + R G I+L +N ++ + + +L ++ Sbjct: 684 PSDEYLMFATEHGMVKKTSMDLYDRTRRDGLIAISLKDNDRLISVKRVAPG-EKVLMVSS 742 Query: 649 AGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKI 707 AG+ +M+ ++ + + G + +N+P G + + P + L + K Sbjct: 743 AGKAIMWDEGEVRAMGRDTMGVRGMNVPPIAKVLG------MEIAQPDTDLFVITEKGYG 796 Query: 708 KLRPEELQKVTGERGRRGT 726 K P RG +G Sbjct: 797 KRTPIAEYP-EHHRGGQGV 814 Score = 73.0 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 37/210 (17%), Positives = 79/210 (37%), Gaps = 15/210 (7%) Query: 482 EREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG------LNYKAGDSFKAAV 535 + ++ D E + ++ G V+ D ++ K D + Sbjct: 671 GETISAVIATKDFPSDEYLMFA-TEHGMVKKTSMDLYDRTRRDGLIAISLKDNDRLISVK 729 Query: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLMESDDQK 593 + + V+ V S G++ R G G + +PP A V M + D Sbjct: 730 RVAPGEKVLMVSSAGKAIM---WDEGEVRAMGRDTMGVRGMNVPPIAKVLGMEIAQPDTD 786 Query: 594 LLMASDAGYGFVCTFNDLVARNRAGKAL--ITLPENAHVMPPVVIEDASDMLLAITQAGR 651 L + ++ GYG + +R G+ + IT+ E ++ + I D ++ +++ G Sbjct: 787 LFVITEKGYGKRTPIAEYPEHHRGGQGVFTITMTEKKGLLAVMKIVAEDDEIMIMSEEGV 846 Query: 652 MLMFPVSDLPQLSK-GKGNKIINIPSAEAA 680 + PVS + +L + +G ++ + Sbjct: 847 CVRTPVSGISELGRSTQGVCVMKTADKDRV 876 >UniRef50_D1B8A6 DNA gyrase, A subunit n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B8A6_THEAS Length = 816 Score = 820 bits (2119), Expect = 0.0, Method: Composition-based stats. Identities = 268/763 (35%), Positives = 420/763 (55%), Gaps = 42/763 (5%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 L L E +++Y++Y+M VI+ RALP DGLKPVQRRI+YAM ELGL S FKKSAR V Sbjct: 17 LPLEEEIKHSYIDYAMSVIVGRALPDARDGLKPVQRRILYAMRELGLRHSQPFKKSARVV 76 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 G+ +GKYHPHGD+A YE MV M+Q FS RYPLVDGQGN+G+ D AAMRYTE+RL Sbjct: 77 GETMGKYHPHGDAAIYETMVRMSQDFSMRYPLVDGQGNFGSIDGDPP-AAMRYTEARLHS 135 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 E +L+++ + T DW+PNFD +L+EP +LP+R+PN+L+NG+TGIAVGMAT++PPHNLRE Sbjct: 136 LGEEMLADIDEDTVDWLPNFDESLEEPAVLPSRIPNLLVNGSTGIAVGMATNMPPHNLRE 195 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 V A L+D P + +L+ V GPD+PT I+ R I Y GRG + +R + Sbjct: 196 VVDACCTLLDNPDVEVGELMTHVPGPDFPTGGVIM-GRDGIIDAYTTGRGKIVVRGCAEI 254 Query: 248 ED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 ED A+VI+ +P+ V+ + ++E I ++ +L + D+RDES+ E RLV+ Sbjct: 255 EDAKRGKKAIVITQIPYMVNKSNLIETIVKGVQAGQLDGITDVRDESNREG-IRLVLELH 313 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRL 362 + D V+ L++ T L+ ++ + +N+ +DGRP NL +L ++ RR VRRR Sbjct: 314 RDS-DPHLVLRQLYSRTQLQTTFGV-INLALVDGRPVELNLKGLLQIFIDHRRMVVRRRT 371 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP---KPALMSRFGLTETQAEAILE 419 YRL K +R HILEGL+ A ID VI +IR+ ++P K L+ G TE QA+AIL+ Sbjct: 372 QYRLRKAEERAHILEGLVKALDMIDMVIALIRSSEDPLVAKGRLVEELGFTEAQAQAILD 431 Query: 420 LKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSP 479 ++L+ L LE+ K++ E +EL + + + IL ++++++++EL +AYGD+RR+ Sbjct: 432 MRLQRLTSLEKHKLQEELAELMAQIARYRLILGDPAELDSVVREELLEVKRAYGDERRTV 491 Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI--------DAPGLNYKAGDSF 531 +++ + +S D++P V + +++ G++R D G K D Sbjct: 492 IEDSVD--DVSYEDLIPETEVVVAMTRDGFIRRMPLQDYRCQARGGKGVKGAAVKGEDEV 549 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR-GQGEPLTGKLTLPPGATVDHM--LME 588 +++ + GR +++ + +P + G+G+ ++ ++L G +V Sbjct: 550 SLVAVTTTHRSLYLFTDRGRVFSLKCLAIPEPKSGRGKHVSTFISLDEGESVVTFRDSAL 609 Query: 589 SDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQ 648 + + + + G +L RAG+ ++ L E+ + V D LL T Sbjct: 610 EGARFVFLVTKMGLAKRLPVGELEGITRAGRRILGLEEDDT-IARVRFTGGEDQLLLTTA 668 Query: 649 AGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH---VGK 704 G+ L ++ + KG + I + + G D ++P + L I +GK Sbjct: 669 KGQTLRVSETEFRPQGRAAKGVRGIKLDPDDLVVGCDV-----IMPGRQVLFISQLGMGK 723 Query: 705 RK----IKLRPEELQKVTGER--GRRGTLMRGLQRIDRVEIDS 741 R + V R R G L+ D EI Sbjct: 724 RTRYEEFTVHHRGGMGVRAMRLGERTGHLVGAWGVADDDEIMV 766 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 73/217 (33%), Gaps = 16/217 (7%) Query: 482 EREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK------AGDSFKAAV 535 + E+ L ++++MG + +++ + D+ Sbjct: 596 DEGESVVTFRDSALEGARFVFLVTKMGLAKRLPVGELEGITRAGRRILGLEEDDTIARVR 655 Query: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLMESDDQK 593 ++ + G+ + R QG G + L P V + ++ Sbjct: 656 FTGGEDQLLLTTAKGQ--TLRVSET-EFRPQGRAAKGVRGIKLDPDDLVVGCDVIMPGRQ 712 Query: 594 LLMASDAGYGFVCTFNDLVARNRAG--KALITLPEN-AHVMPPVVIEDASDMLLAITQAG 650 +L S G G + + +R G + L E H++ + D D ++ IT G Sbjct: 713 VLFISQLGMGKRTRYEEFTVHHRGGMGVRAMRLGERTGHLVGAWGVAD-DDEIMVITSRG 771 Query: 651 RMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGL 686 R++ F D+ LS+ G ++ + + + Sbjct: 772 RVVRFSARDVSSLSRSAMGLTLVRLDEGDQVADVTVI 808 >UniRef50_Q8DPM2 DNA gyrase subunit A n=213 Tax=Bacteria RepID=GYRA_STRR6 Length = 822 Score = 819 bits (2116), Expect = 0.0, Method: Composition-based stats. Identities = 249/768 (32%), Positives = 406/768 (52%), Gaps = 39/768 (5%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 + L + + ++++Y+M VI+ RALP + DGLKPV RRI+Y M+ELG+ KKSAR Sbjct: 8 NVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARI 67 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 GDV+GKYHPHGDS+ YEAMV MAQ +SYRY LVDG GN+G+ D S AA RYTE+R+S Sbjct: 68 TGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDG-DSAAAQRYTEARMS 126 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 K + +L ++ + T D+V N+D +EP +LPAR PN+L+NG TGIAVGMAT+IPPHNL Sbjct: 127 KIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPPHNLG 186 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 E A ++D P+ T L++++ GPD+PT A ++ ++ I K YE G+GS+ +R+ + Sbjct: 187 ETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIVLRSRTE 245 Query: 247 KE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 E +V++ P+ V+ +V E I ++ K++ + +RDES+ E ++ V Sbjct: 246 IETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVIEVK 305 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 R + ++N+LF T ++ ++ N+ I +G P + +L +IL ++ +++ V RR Sbjct: 306 R--DASANVILNNLFKMTQMQTNFGFNMLAIQ-NGIPKILSLRQILDAYIEHQKEVVVRR 362 Query: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQAEAIL 418 + EK R HILEGLL+A +IDEVI IIR + E + LMS+F L+E Q++AIL Sbjct: 363 TRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQAIL 422 Query: 419 ELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRS 478 +++LR L LE KI+ E +L L ILA +++ ++K EL + + D RR+ Sbjct: 423 DMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRT 482 Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS--------AKGHDIDAPGLNYKAGDS 530 L + ++ + D++ V I LS G+++ K G K D Sbjct: 483 ELM-VGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDF 541 Query: 531 FKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS--ARGQGEPLTGKLTLPPGATVDHMLME 588 + V ++ ++F + GR Y + +P +G P+ L L ++ ++ Sbjct: 542 VRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV 601 Query: 589 ----SDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLL 644 SDD L + G + + + G + L + ++ ++ E D ++ Sbjct: 602 ESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMD-II 660 Query: 645 AITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVG 703 T+ G + F S + +S+ G K +N+ + G + Q + I Sbjct: 661 IGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASLITD------QDEVLIITE 714 Query: 704 KRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K K +GR G M+ + ++ + + GD + Sbjct: 715 KGYGKRTVATEYPT---KGRGGKGMQTAKITEKNGLLAGLMTVQGDED 759 Score = 74.1 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 74/220 (33%), Gaps = 18/220 (8%) Query: 481 QEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAA 534 ++ ++ + ++ G V+ + LN K D Sbjct: 591 EDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINV 650 Query: 535 VKGKSNQPVVFVDSTGRSYAIDPITLP----SARGQGEPLTGKLTLPPGATVDHMLMESD 590 + + + ++ G YA+ S G L G TV + +D Sbjct: 651 LLAEGDMDIIIGTKFG--YAVRFNQSAVRGMSRIATGVKGVN---LREGDTVVGASLITD 705 Query: 591 DQKLLMASDAGYGFVCTFNDLVARNRAGK--ALITLPENAHVMPPVVIEDASDMLLAITQ 648 ++L+ ++ GYG + + R GK + E ++ ++ + L+ IT Sbjct: 706 QDEVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITD 765 Query: 649 AGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLA 687 G M+ ++++ Q + G K++ + +A Sbjct: 766 TGVMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVA 805 >UniRef50_P48354 DNA gyrase subunit A n=46 Tax=Bacteria RepID=GYRA_MYCS2 Length = 842 Score = 817 bits (2112), Expect = 0.0, Method: Composition-based stats. Identities = 244/759 (32%), Positives = 401/759 (52%), Gaps = 42/759 (5%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 D E + + + + +Y++Y+M VI+ RALP + DGLKPV RR++YAM + G K Sbjct: 14 DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAK 73 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SAR+V + +G YHPHGD++ Y+ +V MAQP+S RYPLVDGQGN+G+P AAMRYTE Sbjct: 74 SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP-GNDPPAAMRYTE 132 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +RL+ + +L E+ + T D++PN+DG +QEP +LP+R PN+L NG+ GIAVGMAT+IPP Sbjct: 133 ARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPP 192 Query: 183 HNLREVAQAAIALIDQ----PKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGS 238 HNL E+A+A ++ + T + +++ V+GPD+PT I+ ++ I Y+ GRGS Sbjct: 193 HNLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIVGTQ-GIEDTYKTGRGS 251 Query: 239 VRMRAVWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHEN 293 ++MR V + E+ ++VI+ LP+QV+ + IA Q+R+ KL + ++ D+S Sbjct: 252 IKMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRV 311 Query: 294 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVF 353 R+V+ + + V V+N+L+ T L+ S+ N+ I +DG P L +++ ++ Sbjct: 312 GLRIVVELKRDAV-AKVVLNNLYKHTQLQTSFGANMLSI-VDGVPRTLRLDQLIRLYVDH 369 Query: 354 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLT 410 + D + RR YRL K +R HIL GL+ A +DEVI +IR + L+ + Sbjct: 370 QLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARAGLIELLDID 429 Query: 411 ETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQ 470 + QA+AIL+++LR LA LE KI + +++E E L+ ILA + +++ EL+ Sbjct: 430 DIQAQAILDMQLRRLAALERQKIVDDLAKIEAEIADLEDILAKPERQRGIVRDELKEIVD 489 Query: 471 AYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS--------AKGHDIDAPG 522 +GD RR+ + + +S+ D++ E V + +++ G+ + K G Sbjct: 490 KHGDARRTRIVPAD--GEVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGGKGVQG 547 Query: 523 LNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGA 580 K D ++ ++F + GR Y LP A +G+ + L P Sbjct: 548 AGLKQDDMVNHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVANLLAFQPEE 607 Query: 581 TVDHML---MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIE 637 + ++ D L++A+ G +D + G I L E ++ V+ Sbjct: 608 RIAQVIQIKSYEDAPYLVLATRNGLVKKSKLSDFDSNRSGGIVAINLREGDELVGAVLCS 667 Query: 638 DASDMLLAITQAGRMLMFPVSD--LPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVLPP 694 A D LL ++ G+ + F +D L + + G + + +D L L V+ P Sbjct: 668 -AEDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNE------DDRLLSLNVVRP 720 Query: 695 QSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQR 733 + L + K + V G RG +G L R Sbjct: 721 DTYLLVATSGGYAKRTSIDEYSVQG-RGGKGILTIQYDR 758 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 88/212 (41%), Gaps = 14/212 (6%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG------LNYKAGDSFKA 533 Q E + + P ++ ++ G V+ +K D D+ +N + GD Sbjct: 603 FQPEERIAQVIQIKSYEDAPYLVLATRNGLVKKSKLSDFDSNRSGGIVAINLREGDELVG 662 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLMESDD 591 AV + ++ V + G+S + R G +G + + + + D Sbjct: 663 AVLCSAEDDLLLVSANGQSIRFSATD-EALRPMGRATSGVQGMRFNEDDRLLSLNVVRPD 721 Query: 592 QKLLMASDAGYGFVCTFNDLVARNRAGKALITL---PENAHVMPPVVIEDASDMLLAITQ 648 LL+A+ GY + ++ + R GK ++T+ + ++ ++++D ++ L AIT Sbjct: 722 TYLLVATSGGYAKRTSIDEYSVQGRGGKGILTIQYDRKRGSLVGALIVDDDTE-LYAITS 780 Query: 649 AGRMLMFPVSDLPQLSK-GKGNKIINIPSAEA 679 G ++ + + + KG +++N+ + Sbjct: 781 TGGVIRTAARQVRKAGRQTKGVRLMNLAEGDT 812 >UniRef50_A5EV71 DNA topoisomerase IV, A subunit n=2 Tax=Gammaproteobacteria RepID=A5EV71_DICNV Length = 739 Score = 817 bits (2111), Expect = 0.0, Method: Composition-based stats. Identities = 383/739 (51%), Positives = 499/739 (67%), Gaps = 2/739 (0%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + E +L FTE AYL+Y+MYVI+DRALP + DGLKPVQRR+VYAMSELGL+A +K+KKS Sbjct: 3 LEEHYSLAAFTEKAYLDYAMYVILDRALPALADGLKPVQRRLVYAMSELGLSAGSKYKKS 62 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 ARTVGDVLGKYHPHGDSACYEAMVLMAQ FSYRYPL+DGQGNWG+ DDPKSFAAMRYTES Sbjct: 63 ARTVGDVLGKYHPHGDSACYEAMVLMAQNFSYRYPLIDGQGNWGSADDPKSFAAMRYTES 122 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 +L+ Y+ LL+EL T DW NFDGTLQEPK LPARLPNILLNG +GIAVGM+TDIPPH Sbjct: 123 KLTAYAHSLLAELNPETVDWTANFDGTLQEPKTLPARLPNILLNGGSGIAVGMSTDIPPH 182 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 N+ E+ A AL+ P+ + + LL IV PD+PT +I +R EI Y G GSVR+RA Sbjct: 183 NMGEIVAACQALLKNPQLSEEALLQIVPAPDFPTGGVLINTREEIAHCYRTGSGSVRLRA 242 Query: 244 VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 + E +VI LP+QVSG++V EQI Q++ KKL ++ +RDESDH+NPTRLV++PRS Sbjct: 243 SYHIEKDNIVIDELPYQVSGSKVQEQITQQIQEKKLLWLEAVRDESDHKNPTRLVLLPRS 302 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLN 363 +R+D ++M HLFATTDLEK+ RI LNMIGLDG+P +K L+ IL EWL +R TV RRL+ Sbjct: 303 HRIDKKRLMQHLFATTDLEKTVRIQLNMIGLDGKPQIKPLIVILREWLTYREQTVMRRLS 362 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLR 423 YRL + +RL IL GL +AFL +D VI+IIR D+ + ALM LT Q+EAIL ++LR Sbjct: 363 YRLHALNERLEILAGLRIAFLQLDTVIQIIREHDDAQTALMQALPLTAAQSEAILNIRLR 422 Query: 424 HLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQER 483 LAKLEE I E+ L E+ LQ ++ + + EL ADAQ Y D RR+ + Sbjct: 423 QLAKLEENAIVQEEKTLIDEQKSLQNLIDNRDARLQFIADELAADAQNYADPRRTTFIKP 482 Query: 484 EEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPV 543 + A+ PSE VT+VLS+M WVR AK H +D L YK+GD F + KS+Q Sbjct: 483 DAKTALPARAWQPSEAVTLVLSKMAWVRLAKTHQVDGRTLAYKSGDEFLLQIAAKSDQTA 542 Query: 544 VFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYG 603 + + GR YA+ + SARG GEPL+ + T+ +Q ++A++ YG Sbjct: 543 ILCGNDGRYYALSLANIASARGYGEPLSRYFSFAEKTTIVAAAALDPEQYYVLAANNAYG 602 Query: 604 FVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQL 663 FV +DLVA+ + GKA++ + + A+ + + + D +L A+ GR L+FP DLPQ Sbjct: 603 FVVKGSDLVAKTKKGKAVLNVGK-ANALALLPLFDEESLLCALDNTGRTLIFPARDLPQQ 661 Query: 664 SKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGR 723 SKGKGNKI+ I E +G L QL +LPPQ++ + GKR ++L + G RG+ Sbjct: 662 SKGKGNKIMAITQKEWIQGVR-LKQLLILPPQASCLLTSGKRSMQLNAQNWAPYCGARGQ 720 Query: 724 RGTLMRGLQRIDRVEIDSP 742 +G + R VE+ P Sbjct: 721 KGVYLPQPFRNADVEVIMP 739 >UniRef50_B8CZP0 DNA gyrase, A subunit n=5 Tax=Bacteria RepID=B8CZP0_HALOH Length = 816 Score = 812 bits (2097), Expect = 0.0, Method: Composition-based stats. Identities = 260/772 (33%), Positives = 426/772 (55%), Gaps = 40/772 (5%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 + + + + AYL+Y+M VI+ RALP + DGLKPVQRRI+YA+ +LG+ + K Sbjct: 7 NGKVLEVDIENEMKGAYLDYAMSVIVSRALPDVRDGLKPVQRRILYALHDLGITPNKPHK 66 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VG+VLGKYHPHGD+A Y+ MV MAQ FS+RYPLVDG GN+G+ D S AAMRYT Sbjct: 67 KSARVVGEVLGKYHPHGDTAVYDTMVRMAQEFSFRYPLVDGHGNFGSIDG-DSAAAMRYT 125 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E R+++ + LL ++ + T D+ PNFD +L+EP++LPARLPN+L+NG +GIAVGM+T+IP Sbjct: 126 EVRMARLTTELLRDIDKNTVDFAPNFDESLEEPEVLPARLPNLLMNGVSGIAVGMSTNIP 185 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNL EV +ALID P + L+ I++GPD+PT II + +I + Y+ GRG +++ Sbjct: 186 PHNLGEVIDGVVALIDNPDLEVKDLMKIIKGPDFPTGG-IIMGKDKIYQAYKTGRGRLKV 244 Query: 242 RAVWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 R + E+ ++I+ +P+QV+ AR++E+IA +R++K+ + DLRDESD R Sbjct: 245 RGKARIEEDKNGKSKIIITEIPYQVNKARLVEKIANLVRDEKITGISDLRDESDRRG-LR 303 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 +VI + V ++N L+ T L+ +Y + + + +DG P V L E+L+ +L +++ Sbjct: 304 IVIELKKGTV-PKVILNRLYKYTQLQVTYGVIM-LALVDGMPRVLTLKELLNHYLEHQKE 361 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQ 413 V RR Y+L+K R HILEGL +A NID+++++IR D + L+ F LTE Q Sbjct: 362 VVTRRTKYQLDKAEARAHILEGLRIALANIDDIVQLIREAPDVDTARRGLIENFNLTEKQ 421 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 AEAIL ++L+ L LE KI E EL+++ + ILA E K+ ++K EL + + Sbjct: 422 AEAILRMRLQRLTGLERDKIEAEYKELKEKIAYYRSILADEGKLLGIIKDELLELKEKFQ 481 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GLNY 525 D+RR+ + +A + D++P E V I L+ G+++ + G+N Sbjct: 482 DERRTEI--SIQAVDLDVEDLIPEEQVVITLTHHGYIKRMPIDIYRSQRRGGKGIIGINT 539 Query: 526 KAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVD 583 K D + ++ +F + G+ Y + +P S + +G + L L + Sbjct: 540 KEEDFVEHVFTTSTHHYFLFFTNKGKVYRLRVFEIPQASRQARGTAIVNLLELEEEERIT 599 Query: 584 HMLM---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDAS 640 ++ +++ L+M + G + +R G +TL + ++ V D + Sbjct: 600 TVIPIREFDEERYLVMVTRNGMIKKTPLAEYESR-YTGLIGLTLRDEDELID-VKYTDGN 657 Query: 641 DMLLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLT 699 ++ +T G+ + F +++ + + G K I + D + + V L Sbjct: 658 QSVIIVTHRGKAIHFKENEVRSMGRTAMGVKAITLEDG------DYVVGMGVDSEGDDLL 711 Query: 700 IHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 + K K P E + RG +G + + ++ + + D + Sbjct: 712 VITEKGYGKRTPLEEYR-LQSRGGKGLITANI--TEKNGNLAGVKVVREDHD 760 Score = 87.2 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 76/195 (38%), Gaps = 13/195 (6%) Query: 497 SEPVTIVLSQMGWVRSAKGHDIDAP-----GLNYKAGDSFKAAVKGKSNQPVVFVDSTGR 551 E +++++ G ++ + ++ GL + D NQ V+ V G+ Sbjct: 609 EERYLVMVTRNGMIKKTPLAEYESRYTGLIGLTLRDEDELIDVKYTDGNQSVIIVTHRGK 668 Query: 552 SYAIDPITLPSARGQGEPL--TGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFN 609 + + R G +TL G V M ++S+ LL+ ++ GYG Sbjct: 669 AIHFKENEV---RSMGRTAMGVKAITLEDGDYVVGMGVDSEGDDLLVITEKGYGKRTPLE 725 Query: 610 DLVARNRAGKALI--TLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGK 667 + ++R GK LI + E + V + L+ IT G ++ V + +L + Sbjct: 726 EYRLQSRGGKGLITANITEKNGNLAGVKVVREDHDLILITSEGIIIRTRVEGISRLGRNT 785 Query: 668 -GNKIINIPSAEAAR 681 G K+I + + Sbjct: 786 LGVKVIRLEEGDRVV 800 Score = 57.6 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 59/177 (33%), Gaps = 17/177 (9%) Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGW--------VRSAKGHDIDAPGLNYKAGDS 530 L++ +E + D I+++ G VRS + + + GD Sbjct: 641 TLRDEDELIDVKYTD---GNQSVIIVTHRGKAIHFKENEVRSMGRTAMGVKAITLEDGDY 697 Query: 531 FKAAVKGKSNQPVVFVDSTG--RSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLME 588 ++ + G + ++ L S G+G +T +T G + + + Sbjct: 698 VVGMGVDSEGDDLLVITEKGYGKRTPLEEYRLQSRGGKGL-ITANITEKNG-NLAGVKVV 755 Query: 589 SDDQKLLMASDAGYGFVCTFNDLVA--RNRAGKALITLPENAHVMPPVVIEDASDML 643 +D L++ + G + RN G +I L E V+ I + Sbjct: 756 REDHDLILITSEGIIIRTRVEGISRLGRNTLGVKVIRLEEGDRVVSLARISPEEKDI 812 >UniRef50_P41513 DNA gyrase subunit A n=98 Tax=Bacteria RepID=GYRA_ERWCA Length = 878 Score = 811 bits (2095), Expect = 0.0, Method: Composition-based stats. Identities = 270/787 (34%), Positives = 423/787 (53%), Gaps = 76/787 (9%) Query: 1 MSDMAERLA---LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 57 MSD+A + + E +++YL+Y+M VI+ RALP + DGLKPV RR++YAMS LG + + Sbjct: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWN 60 Query: 58 AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 117 +KKSAR VGDV+GKYHPHGDSA YE +V MAQPFS RY LVDGQGN+G+ D S AA Sbjct: 61 KPYKKSARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAA 119 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 MRYTE R+SK + LL++L + T D+VPN+DGT Q P ++P R+PN+L+NG++GIAVGMA Sbjct: 120 MRYTEIRMSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMA 179 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T+IPPHNL EV +A ID +L+ L++ ++GPD+PT A II R I + Y GRG Sbjct: 180 TNIPPHNLTEVVNGCLAYIDDENISLEGLMEHIKGPDFPT-AAIINGRRGIEEAYRTGRG 238 Query: 238 SVRMRAVWKKE------DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDH 291 + +RA + E +++ +P+QV+ AR++E+IA +++K++ + LRDESD Sbjct: 239 KIYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDK 298 Query: 292 ENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWL 351 + R+VI + + V + V+N+L++ T L+ S+ IN+ + G+P + L +IL ++ Sbjct: 299 DG-MRIVIEIKRDAVG-EVVLNNLYSQTQLQTSFGINM-VALHQGQPKIMPLKDILVAFV 355 Query: 352 VFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMS--- 405 RR+ V RR + L K R HILEGL +A NID +IE+IR E K +L++ Sbjct: 356 RHRREVVTRRTIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAW 415 Query: 406 -------------------------------RFGLTETQAEAILELKLRHLAKLEEMKIR 434 R+ LTE QA+AIL+L+L+ L +E K+ Sbjct: 416 ELGSVATMLERAGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLL 475 Query: 435 GEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDM 494 E EL E +L IL S ++ ++++EL+A Y D+RR+ + ++ D+ Sbjct: 476 DEYKELLAEIAELLYILNSPERLMEVIREELEAFKTQYSDERRTEITA--NTADINIEDL 533 Query: 495 LPSEPVTIVLSQMGWVRSAKGHDIDAPG--------LNYKAGDSFKAAVKGKSNQPVVFV 546 + E V + LS G+V+ D +A K D + ++ ++ Sbjct: 534 INQEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCF 593 Query: 547 DSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHMLM---ESDDQKLLMASDAG 601 S GR Y + LP A +G P+ L L + +L + + + MA+ +G Sbjct: 594 SSRGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGRHIFMATASG 653 Query: 602 YGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLP 661 + +R+ +G + L E ++ V + D SD + + G+++ F + Sbjct: 654 TVKKTALTEF-SRHVSGIIAVNLNEGDELIG-VDLTDGSDEAMLFSAEGKVVRFSEQAVR 711 Query: 662 QLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGE 720 + + G + IN+ +GED + L + + + K T Sbjct: 712 SMGRTATGVRGINL------QGEDRVVSLIIPRGEGDILTVTQNGFGKRTAVSEYP-TKS 764 Query: 721 RGRRGTL 727 R +G + Sbjct: 765 RATKGVI 771 Score = 78.8 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 82/226 (36%), Gaps = 24/226 (10%) Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSA-----KGHDIDAPGLNYKA 527 D+R + + E + + + G V+ H +N Sbjct: 627 ADERITAILPVREYEEGRH---------IFMATASGTVKKTALTEFSRHVSGIIAVNLNE 677 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHM 585 GD + + + G+ + + R G TG + L V + Sbjct: 678 GDELIGVDLTDGSDEAMLFSAEGKVVR---FSEQAVRSMGRTATGVRGINLQGEDRVVSL 734 Query: 586 LMESDDQKLLMASDAGYGFVCTFNDLVARNRA--GKALITLPE-NAHVMPPVVIEDASDM 642 ++ + +L + G+G ++ ++RA G I + E N V+ V + DA+D Sbjct: 735 IIPRGEGDILTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERNGKVVGAVQV-DAADQ 793 Query: 643 LLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLA 687 ++ IT AG ++ VS++ + + +G +I E G +A Sbjct: 794 IMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVA 839 >UniRef50_Q2IHQ4 DNA gyrase subunit A n=15 Tax=cellular organisms RepID=Q2IHQ4_ANADE Length = 907 Score = 807 bits (2086), Expect = 0.0, Method: Composition-based stats. Identities = 260/797 (32%), Positives = 415/797 (52%), Gaps = 64/797 (8%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 ++ + + +YL+YSM VI+ RALP + DGLKPV RR++YAM GL+ + ++ K A Sbjct: 27 QVNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHYNKRYSKCAGV 86 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VG+VL KYHPHGD++ Y+A+V +AQ ++ RYPL+DGQGN+G+ D AA RYTE RL Sbjct: 87 VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDGDP-AAAYRYTECRLE 145 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 + S+ LL+++ + T DW PNFD ++ EP++LP R PN+L+NG+ GIAVGMAT+IPPHN+ Sbjct: 146 RLSDHLLADIDKDTVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMG 205 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW- 245 EV AA+ LI+ PK T+ L+ + GPD+PT II R IR YE GRG++++RA Sbjct: 206 EVIDAAVHLIENPKATVLDLMRFIPGPDFPTAG-IIRGRDGIRAAYEKGRGTIQVRARTV 264 Query: 246 -----KKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 K E +V++ +P+QV+ A+++E IA +R K++ + DLRDES E R+VI Sbjct: 265 VEIHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREG-MRIVIE 323 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360 + + + V+N+L+A T ++ + + + I G+P V L E+L ++ RRD V R Sbjct: 324 LKRDAL-AQVVLNNLYAHTQMQMGFGVIMLAID-GGQPRVLTLKEMLERFVAHRRDVVTR 381 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAEAI 417 R Y L K +R HIL G +A +IDE+IE+I+ + + +M+RF L+E QA+AI Sbjct: 382 RTRYELRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMARFALSELQAKAI 441 Query: 418 LELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRR 477 LE++L+ L LE KI E +E++K +L+ ILASE+ + L+ EL+ Q + D+RR Sbjct: 442 LEMQLQRLTGLERQKILDELAEVQKLITRLKEILASEKVLMELIVGELREVKQLFADERR 501 Query: 478 SPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS--------AKGHDIDAPGLNYKAGD 529 + +Q EA +S D++ E + + +S +G+V+ K G + D Sbjct: 502 TEIQG--EATDLSTEDLIAEEEMVVTVSHLGYVKRNPVSLYRAQKRGGRGKTGAATRDED 559 Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLM 587 ++ ++ ++ G+ Y + +P A +G+P+ + L PG V +L Sbjct: 560 FLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGKPIVNLVQLAPGEKVAAILP 619 Query: 588 E------------------------------SDDQKLLMASDAGYGFVCTFNDLVARNRA 617 + M + G A Sbjct: 620 VRRLPEPAGAAEETPEAEGAEAEKAEEATAEGPPAFVFMVTRKGLIKKTRLEQFARPRAA 679 Query: 618 GKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPS 676 G + + E ++ + D +L T G + F SD+ + + G K I + Sbjct: 680 GIIGLGIEEGDELITARL-TDGGGHILLSTARGMAIRFEESDVRPMGRTAYGVKGITLEE 738 Query: 677 AEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTL-MRGLQRID 735 + + T+ K +V RG +G + ++ +R Sbjct: 739 GDEVVAGAAIPAAAEGEQAHTVLTVTANGYGKRTELAEYRVQT-RGGKGLITIKTTERNG 797 Query: 736 RVEIDSPRRASSGDSEE 752 V +P GD+EE Sbjct: 798 PVVAAAPV----GDAEE 810 Score = 71.8 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 72/197 (36%), Gaps = 22/197 (11%) Query: 500 VTIVLSQMGWVRSAKGHDIDAP------GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSY 553 ++++ G ++ + P GL + GD A ++ + G + Sbjct: 655 FVFMVTRKGLIKKTRLEQFARPRAAGIIGLGIEEGDELITARLTDGGGHILLSTARGMAI 714 Query: 554 AIDPITL-PSAR-GQGEPLTGKLTLPPGATVDHMLMES------DDQKLLMASDAGYGFV 605 + + P R G +TL G V +L + GYG Sbjct: 715 RFEESDVRPMGRTAYG---VKGITLEEGDEVVAGAAIPAAAEGEQAHTVLTVTANGYGKR 771 Query: 606 CTFNDLVARNRAGKALITLPE---NAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQ 662 + + R GK LIT+ N V+ + DA + ++ IT AG ++ P + Sbjct: 772 TELAEYRVQTRGGKGLITIKTTERNGPVVAAAPVGDAEE-VMLITNAGMLIRMPARGISV 830 Query: 663 LSK-GKGNKIINIPSAE 678 + + +G ++I + S E Sbjct: 831 IGRNTQGVRLITLESKE 847 >UniRef50_Q55738 DNA gyrase subunit A n=43 Tax=cellular organisms RepID=GYRA_SYNY3 Length = 860 Score = 805 bits (2080), Expect = 0.0, Method: Composition-based stats. Identities = 262/735 (35%), Positives = 402/735 (54%), Gaps = 46/735 (6%) Query: 1 MSDMAERL---ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 57 M+D +RL L +YL Y+M VI+ RALP DGLKPV RRI+YAM ELGL Sbjct: 1 MTDSPDRLIATDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPD 60 Query: 58 AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 117 F+K AR VG+VLGKYHPHGD+A Y+A+V MAQ FS R PL+DG GN+G+ D+ AA Sbjct: 61 RPFRKCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMREPLIDGHGNFGSVDNDPP-AA 119 Query: 118 MRYTESRLSKY-SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGM 176 MRYTESRL + LL ++ T D++ NFDG+ QEP +LPAR+P +L+NG++GIAVGM Sbjct: 120 MRYTESRLRPLSTNSLLRDIEAETVDFIDNFDGSQQEPTVLPARIPQLLINGSSGIAVGM 179 Query: 177 ATDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR 236 AT+IPPHNL EV AIALI P+ T +L+ I+ GPD+PT A+I+ R+ IR+ Y GR Sbjct: 180 ATNIPPHNLGEVIDGAIALIRNPEITEQELMQIIPGPDFPTGAQIL-GRSGIREAYLTGR 238 Query: 237 GSVRMRAVWKKE---------DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRD 287 GS+ MR V E A++++ LP+Q + A ++E+IA + +KK+ + D+RD Sbjct: 239 GSITMRGVASIETMEHPGRPDRDAIIVTELPYQTNKAALIERIADLVNDKKIDGIADIRD 298 Query: 288 ESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEIL 347 ESD + R+VI + + V+N+L+ T ++ ++ NL + ++G P V + + L Sbjct: 299 ESDRDG-MRIVIELKRD-AYARVVLNNLYKQTPIQSNFGANL-LALVNGTPEVLTIKKFL 355 Query: 348 SEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALM 404 + + FR +T+ RR Y L K +R H+L+GLL+A N+D VI +IR + K L+ Sbjct: 356 TVFWEFRIETITRRTRYELRKAEERDHLLQGLLIALDNLDAVIRLIRGAADTASAKTELV 415 Query: 405 SRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKE 464 F L+E QA+AIL+++LR L LE KI E EL+ + Q ILA ++N ++++E Sbjct: 416 EGFSLSEVQADAILQMQLRRLTALEADKITAEHDELQTKIADFQDILARRERVNAIIEEE 475 Query: 465 LQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG-- 522 L+ + RR+ + + E + + D++ ++ I+L++ G+++ Sbjct: 476 LEQIKAIHATPRRTVIVQ--EDGELIDTDLIANDQALILLTEQGYIKRMPASTFGTQNRA 533 Query: 523 ------LNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKL 574 K D + + + V+F G Y+++ +P S +G P+ L Sbjct: 534 TRGKAAAKIKDDDGVEHFLSCCDHDKVLFFSDRGVVYSLNAYQIPIASRTARGVPIVQML 593 Query: 575 TLPPGATVD---HMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVM 631 +P + + DD +M + GY + G I+L E + Sbjct: 594 PIPKDEKITSLVSVSEFDDDTYFIMLTKQGYIKKTALSAFSNIRANGLIAISLVEGDQL- 652 Query: 632 PPVVIEDASDMLLAITQAGRMLMFPV--SDLPQLSKG-KGNKIINIPSAEAARGEDGLAQ 688 V + A D ++ +Q G + F +L L + +G K + + S D L Sbjct: 653 RWVRLAKAEDSVIIGSQKGMAIHFKADQDELRALGRATRGVKSMRLRSG------DALIS 706 Query: 689 LYVLPPQSTLTIHVG 703 + +LP Q I VG Sbjct: 707 MDILPSQVVANIAVG 721 Score = 61.4 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 77/233 (33%), Gaps = 44/233 (18%) Query: 497 SEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTG 550 + I+L++ G+++ ++ GD + K+ V+ G Sbjct: 612 DDTYFIMLTKQGYIKKTALSAFSNIRANGLIAISLVEGDQLRWVRLAKAEDSVIIGSQKG 671 Query: 551 RSYAIDPIT------------LPSARGQ-GEPLTGKLTLPPGATVDHMLMESDDQ----- 592 + + S R + G+ L + P V ++ + S+D+ Sbjct: 672 MAIHFKADQDELRALGRATRGVKSMRLRSGDALISM-DILPSQVVANIAVGSEDEPDEDL 730 Query: 593 ----------------KLLMASDAGYGFVCTFNDLVARNRA--GKALITLPENAHVMPPV 634 LL + G+G ++RA G I + + Sbjct: 731 GGDTDAILEESDNPGPWLLGVTMKGFGKRVPIGQFRLQHRAGLGVKAIRFKSKDDQLVAL 790 Query: 635 VIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGL 686 + +A D L+ +T G ++ V+D+ S+ G ++ + + +A + Sbjct: 791 HVVNADDELMIVTNRGIIIRQSVNDISPQSRSATGVRVQRLDADDAIAAVALV 843 >UniRef50_C6XXU9 DNA gyrase, A subunit n=14 Tax=Bacteria RepID=C6XXU9_PEDHD Length = 869 Score = 804 bits (2078), Expect = 0.0, Method: Composition-based stats. Identities = 248/771 (32%), Positives = 425/771 (55%), Gaps = 41/771 (5%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 +D R+ + E +AY++YSM VI+ RALP + DGLKPV RR++Y M +LGL + +K Sbjct: 10 NDKIIRIDIDEQMRSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMLDLGLANNKPYK 69 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VG+VLGKYHPHGD++ Y MV MAQ +S RY +V+GQGN+G+ D S AAMRYT Sbjct: 70 KSARIVGEVLGKYHPHGDASVYNTMVRMAQEWSLRYLMVEGQGNYGSIDG-DSPAAMRYT 128 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+R K +E +L+++ + T D+ NFD +LQEP +LP+++PN+L+NG++GIAVGMAT++P Sbjct: 129 EARFQKIAEDMLADINKDTVDFQLNFDDSLQEPTVLPSKVPNLLINGSSGIAVGMATNMP 188 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHN+ E A IA ID + T+ +L+ ++ PD+PT A II +++ +E GRG + M Sbjct: 189 PHNITETINATIAYIDNNEITIAELMKFIKAPDFPTGA-IIYGYTGVQEAFETGRGRIVM 247 Query: 242 RAVWKKE----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 RA + E ++++ +P+QV+ A+++E+ A + KKL + +++DES+ + R+ Sbjct: 248 RAKAEIEAAKDREVIIVTEIPYQVNKAQMIERTAELVGEKKLEGISNIKDESNKDG-IRI 306 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 V + + + V+N+LF T L+ S+ +N N+ + GRP + NL +++ ++ R + Sbjct: 307 VYEIKRD-ANASIVLNNLFKQTALQTSFSVN-NIALVKGRPQLLNLRDLIHYFVEHRHEV 364 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQA 414 V RR + L + KR HILEGLL+A ++DEVI++IR+ D + + LM +FGL++ QA Sbjct: 365 VVRRTKFELAEAKKRAHILEGLLIALDHLDEVIKLIRSSDTPEDARTGLMEKFGLSDIQA 424 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 AIL++ LR L LE KI+ E +EL K + LQ IL E K ++K EL + YGD Sbjct: 425 RAILDMTLRRLTGLERDKIKDEYNELMKTIEYLQSILDDESKRMQIIKDELTEMKEKYGD 484 Query: 475 DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GLNYK 526 +RR+ + E MS D + E V I +S G+++ + G + + Sbjct: 485 ERRTTIVHSAE--DMSMEDFIEDEEVVITISHEGYIKRTPATEYRTQGRGGKGSKGSDSR 542 Query: 527 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDH 584 D + + ++ ++F TGR + + +P +G + + +P + Sbjct: 543 NEDFIEHLLIASNHNYMLFFTETGRCFWLRVYEIPEGTRLSKGRAIQNIINIPKEEKIKA 602 Query: 585 MLMES--------DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVI 636 + ++ ++M + G + G I + E ++ + Sbjct: 603 FIKVKNLKDQEYLENNYIIMCTKKGTIKKTSLEAYSRPRVNGINAININEGDQLLEASLT 662 Query: 637 EDASDMLLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQ 695 +S++++A+ ++GR + F + + + G + + + + ++ + + V P Sbjct: 663 TGSSEIVMAL-RSGRAIRFNEEKVRPMGRTATGVRGVTLAHEK----DEVVGMIAVDDPG 717 Query: 696 STLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRAS 746 +T+ + K K E +VT R G ++ + D+ ++ Sbjct: 718 ATILVVSEKGYGKRTDIEDYRVT---NRGGKGVKTINVTDKTGNLVAIKSV 765 Score = 79.2 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 85/229 (37%), Gaps = 17/229 (7%) Query: 466 QADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------D 519 +A + ++ + K + + + L + I+ ++ G ++ Sbjct: 586 RAIQNIINIPKEEKIKAFIKVKNLKDQEYLEN-NYIIMCTKKGTIKKTSLEAYSRPRVNG 644 Query: 520 APGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK----LT 575 +N GD A + +V +GR+ + + R G TG L Sbjct: 645 INAININEGDQLLEASLTTGSSEIVMALRSGRAIRFNEEKV---RPMGRTATGVRGVTLA 701 Query: 576 LPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKAL--ITLPENAHVMPP 633 V + ++ +L+ S+ GYG D NR GK + I + + + Sbjct: 702 HEKDEVVGMIAVDDPGATILVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVTDKTGNLVA 761 Query: 634 VVIEDASDMLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAAR 681 + +D L+ I ++G ++ VS+L + + +G ++IN+ + Sbjct: 762 IKSVTDADDLMIINKSGIVIRIVVSELRVMGRATQGVRLINLKGNDEIA 810 >UniRef50_Q1IH79 DNA gyrase subunit A n=5 Tax=Bacteria RepID=Q1IH79_ACIBL Length = 865 Score = 804 bits (2077), Expect = 0.0, Method: Composition-based stats. Identities = 252/801 (31%), Positives = 426/801 (53%), Gaps = 71/801 (8%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 + + + E + +YL+YSM VI+ RALP + DGLKPV RRI+YAM ++GL + K K A Sbjct: 23 IQPINIEEEMKRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMHDMGLLHNRKHVKCA 82 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 + VG+VLGKYHPHGDSA Y+AMV MAQ FS RYPLVDGQGN+G+ D AA RYTE+R Sbjct: 83 KVVGEVLGKYHPHGDSAVYDAMVRMAQDFSLRYPLVDGQGNFGSVDGDPP-AAYRYTEAR 141 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 ++ +E LL+++ + T D+V NFD T EP +LP ++PN+L+NG+ GIAVGMAT+IPPHN Sbjct: 142 MTAIAEELLADIDKDTVDFVANFDDTSAEPLLLPTKVPNLLINGSNGIAVGMATNIPPHN 201 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 L E+ A I +++ PK+TLD +L VQGPD+PT I + I+ Y+NGRG MRA Sbjct: 202 LTEIVDACITIVNNPKSTLDDVLKFVQGPDFPTGGFI-HGKGGIKNAYQNGRGRFMMRAK 260 Query: 245 WKKE----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 E A+V++ +P+QV+ + ++++IA + +K + + D+RDESD + R+VI Sbjct: 261 VAVEHLPNKDAIVVTEIPYQVNKSTLIKKIADLVNDKTIDEISDVRDESDRDG-MRIVIE 319 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360 + + + V+N L+ T +++S+ + + ++ +P L++ L+ ++ R D VRR Sbjct: 320 LKRS-AQPEIVLNQLYKHTQMQESFSMIFLAV-VNNQPKEMGLVQALNHFIDHRIDVVRR 377 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRF---------- 407 R Y L+K R HILEG L+A ++D VI IIR N + + L++ F Sbjct: 378 RTFYLLQKAKDREHILEGYLMALDHLDNVIAIIRGSSNRADARENLVAYFTGKKITINTT 437 Query: 408 ----------GLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKM 457 + QA+AILEL+L L +L +I E ++ + + + ILASE+K+ Sbjct: 438 GKAPKVDPEKPFSTRQADAILELQLHRLTRLSIDEITSELKDVRERIAEYESILASEKKL 497 Query: 458 NNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS----- 512 +++ KEL+ + YGD+RR+ +Q+ EA +S D++ E V + +S G+++ Sbjct: 498 RSVIVKELEQIRKDYGDERRTIIQD--EAAELSLEDLIADEQVAVTVSHSGYLKRTPIST 555 Query: 513 ---AKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS--ARGQG 567 + G++ + D + ++ ++ +TGR Y + +P A G+G Sbjct: 556 YRQQRRGGTGRKGMSTRDEDFVEMMFVASTHAYLLIFTNTGRVYWLKVYEVPEIAAAGKG 615 Query: 568 EPLTGKLTLPPGATVDHMLM----ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALIT 623 + + + L PG +V +L E + + + + G D G I Sbjct: 616 KHIGNLVALQPGESVRAILPVKSLEEESRYVFFTTRKGTVKKTALVDFSNVMARGIIAIG 675 Query: 624 LPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARG 682 + ++ ++ + D++ ++ + G + F +D+ + + G + ++I + Sbjct: 676 IDKDDELVAAQL-TDSNQIVFLASHEGLAIRFDEADVRIMGRPAYGVRGMDIGA------ 728 Query: 683 EDGLAQLYVLPPQST------------LTIHVGKRKIKLRPEELQKVTGERGRRGTLMRG 730 +D + + + P + + K + + RG +G + Sbjct: 729 KDYIVGMAITPKERKKGKNGGADTANLILSVTENGYGKRTDVDEYR-LQTRGGKGVI--N 785 Query: 731 LQRIDRVEIDSPRRASSGDSE 751 ++ +R + D+E Sbjct: 786 VKTTERNGKVVAIMLVTEDAE 806 Score = 66.8 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 42/245 (17%), Positives = 88/245 (35%), Gaps = 29/245 (11%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLS-QMGWVRSAKGHDI------DAPGLNYKAGDSFK 532 LQ E +A+ L E + + + G V+ D + D Sbjct: 624 LQPGESVRAILPVKSLEEESRYVFFTTRKGTVKKTALVDFSNVMARGIIAIGIDKDDELV 683 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGAT--VDHMLMESD 590 AA SNQ V G + D + R G P G + GA + M + Sbjct: 684 AAQLTDSNQIVFLASHEGLAIRFDEADV---RIMGRPAYGVRGMDIGAKDYIVGMAITPK 740 Query: 591 DQK------------LLMASDAGYGFVCTFNDLVARNRAGKALITLPE---NAHVMPPVV 635 ++K +L ++ GYG ++ + R GK +I + N V+ ++ Sbjct: 741 ERKKGKNGGADTANLILSVTENGYGKRTDVDEYRLQTRGGKGVINVKTTERNGKVVAIML 800 Query: 636 IEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPP 694 + + ++ + I+Q G+++ + + + +G +++++ + + Sbjct: 801 VTEDAEA-MVISQYGKIIRTSTDSIREAGRSTQGVRLLHLEPGDKVAAAVVIPDDEKAEA 859 Query: 695 QSTLT 699 + TL Sbjct: 860 EPTLL 864 >UniRef50_B4W7D2 DNA topoisomerase IV, A subunit n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W7D2_9CAUL Length = 737 Score = 801 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 285/733 (38%), Positives = 431/733 (58%), Gaps = 22/733 (3%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 + YL Y++ I +RALP + DG KPV RRI+YAM ++ LN A +K A+ VG Sbjct: 17 PMETALSRRYLAYALSTITNRALPDVRDGFKPVHRRILYAMHQMRLNPQAAARKCAKVVG 76 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 +V+G YHPHGD++ YEA+V +AQ F+ RYPLVDGQGN+G D S AAMRYTE +L+ Sbjct: 77 EVMGGYHPHGDASIYEALVRLAQDFAQRYPLVDGQGNFGNIDG-DSAAAMRYTECKLTPA 135 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 + LLL + Q + D+ +D +EP +LPA PN+L NG++GIAVGMAT IPPHN+ E+ Sbjct: 136 AVLLLDGIDQDSVDFRATYDDQDEEPVVLPAGFPNLLANGSSGIAVGMATSIPPHNVGEL 195 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248 A L+D+P+ T +L+ +V GPD+PT + A I YE GRG VR+RA W+ E Sbjct: 196 IDACQMLLDRPEATTAELVQLVPGPDFPTGGVAVEGHASILDAYETGRGGVRLRARWETE 255 Query: 249 D-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 D ++++ +P+QV +R++E +A + +KK P++ D+RDES + RL++ P++ Sbjct: 256 DLGRGVWRIIVTEMPYQVQKSRLIEALADLIEHKKAPLLGDVRDESAED--IRLILEPKN 313 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLN 363 ++ + +M LF +DLE + IN+N++ DG P V L L +L RR+ + RR Sbjct: 314 RTIEPEMLMESLFKLSDLEVRFPINMNVLDADGTPRVMGLKACLRAFLDHRREVLNRRSQ 373 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLR 423 +R+ +V KRLH+LEGL + FLNIDEVI I+R E++PK L++RFGLTE QA+ IL+ +LR Sbjct: 374 WRIARVEKRLHLLEGLRIVFLNIDEVIRIVREEEQPKAVLIARFGLTEVQADFILDTRLR 433 Query: 424 HLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQER 483 LA+LEEM I E L +E LQ + +SE K + KEL+A +A RR+ + + Sbjct: 434 QLARLEEMTIEKEFKALSEELAHLQALTSSEGKQWKAISKELEAVRKALISPRRTTIADA 493 Query: 484 EEAKA-MSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQP 542 + A ++ +P E +T++LS+ GW+R+AKG D L +K GD V + Sbjct: 494 VDTSAFVAPEAFIPREAITVILSERGWIRAAKGKVEDPSELKFKEGDQLAYLVPAYTTDK 553 Query: 543 VVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGY 602 ++ S GR + I L S RG GEPL + L A + ++L KLL+AS AGY Sbjct: 554 LLVGASDGRIFTIGADKLASGRGHGEPLRLMIDLDEKAEIINVLAHQPGGKLLIASKAGY 613 Query: 603 GFVCTFNDLVARNRAGKALITLPENAHV-MPPVVIEDASDMLLAITQAGRMLMFPVSDLP 661 GF+ +D +A+ R GK ++ + M + +D + I + + L+FP+ +LP Sbjct: 614 GFIAPEDDTLAQKRGGKQVLN---GDMLAMLRIPQTPTADHVATIGENIKTLIFPLDELP 670 Query: 662 QLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGER 721 ++ +GKG ++ N GLA + V + G + + P + + G+R Sbjct: 671 EMGRGKGVRLQNFKQG-------GLADVTVFNAEQGPEWADGGGRRRNWP-DWKDWLGKR 722 Query: 722 GRRGTL-MRGLQR 733 G RGL++ Sbjct: 723 AGAGRQGPRGLRK 735 >UniRef50_B2RJ49 DNA gyrase A subunit n=17 Tax=Bacteria RepID=B2RJ49_PORG3 Length = 859 Score = 799 bits (2065), Expect = 0.0, Method: Composition-based stats. Identities = 248/779 (31%), Positives = 402/779 (51%), Gaps = 48/779 (6%) Query: 1 MSDMAERL---ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 57 M+D +R+ ++ E + AY++YSM VI+ RALP + DG KPV RR++YAM+E G + Sbjct: 1 MTDREDRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYT 60 Query: 58 AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 117 +K A VG+VLG YHPHGDS+ Y A+V MAQP+S RYPLVDGQGN+G+ D S AA Sbjct: 61 NPTRKCANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDG-DSPAA 119 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 MRYTESRLS+ + +L ++ + T D+ NFD T QEP +LP R+PN+L+NG +GIAVGMA Sbjct: 120 MRYTESRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMA 179 Query: 178 TDIPPHNLREVAQAAIALID-QPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR 236 T++PPHNL E +A I+ ++ L+ V+ PD+PT I + +++ +E GR Sbjct: 180 TNMPPHNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFI-YGYSGVKEAFETGR 238 Query: 237 GSVRMRAVWKKED----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHE 292 G V +R+ + E ++I+ +P+ V+ A ++ IA + K+L + ++ DES+ + Sbjct: 239 GRVVIRSRAEIEQHNNHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRK 298 Query: 293 NPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLV 352 +V + R + V+N L+ T L+ S+ +N N+ + GRP + NL +++ E++ Sbjct: 299 GMRIVVEIKR--DANASVVLNKLYKMTALQSSFSVN-NIALVKGRPRLLNLKDLIGEFVD 355 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGL 409 R++ V RR + L K +R HILEGLL+A NIDEVI IIR+ + A L+ RF L Sbjct: 356 HRQEVVTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIERFDL 415 Query: 410 TETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADA 469 ++ QA +I++++LR L LE K+R E E+ + L+ +LA + L+K EL Sbjct: 416 SDIQARSIVDMRLRALTGLERDKLRAEFEEIMASINHLEALLADRALLMELVKSELLEIK 475 Query: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAK--------GHDIDAP 521 + YGD R+S + E + D + + I LS MG+++ + A Sbjct: 476 EKYGDTRKSEIIYASE--EFNPEDFYADDDMIITLSHMGYIKRTPLSEFRTQARGGVGAK 533 Query: 522 GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPG 579 G + + D + + ++ + GR Y + +P +G + L + P Sbjct: 534 GSDTREEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPEGAKNAKGRAIQNLLNIDPD 593 Query: 580 ATVDHMLMES---------DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHV 630 V+ + + LL + G G I L +N + Sbjct: 594 DKVNAFIRIKNLTTDKEFVNSHYLLFCTKRGIIKKTLLEAFSRPRANGVIAIDLRDNDGL 653 Query: 631 MPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQL 689 + + DM++A + GR + F S + + G K + + GED + + Sbjct: 654 VSVRLTNGKCDMVIA-NRGGRAIRFHESVVRPSGRTAMGVKGMTLDDD----GEDEVVGM 708 Query: 690 YVL--PPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRAS 746 + P + T+ + K K + ++T R G ++ L ++ RA Sbjct: 709 ISIKHPEEETILVVSEKGYGKRSNIDDYRIT---NRGGKGVKTLNITEKTGKLVDIRAV 764 >UniRef50_A8LLG0 DNA topoisomerase IV, A subunit n=23 Tax=Alphaproteobacteria RepID=A8LLG0_DINSH Length = 777 Score = 799 bits (2065), Expect = 0.0, Method: Composition-based stats. Identities = 285/762 (37%), Positives = 434/762 (56%), Gaps = 46/762 (6%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 L YL Y++ IM RALP DGLKPV RRI+YAM EL L+A+ F+KSA+ G Sbjct: 26 PLRRAIGARYLQYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSATGGFRKSAKISG 85 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 DV+G YHPHGD+A Y+AM +AQ F+ RYPLVDGQGN+G D + AA RYTE+RL+ Sbjct: 86 DVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG-DNPAASRYTEARLTAA 144 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 +E L+ L + D+ N+DGTL EP++LPA PN+L NG++GIAVGMAT+IPPHNL E+ Sbjct: 145 AEALMEGLAENAVDFRDNYDGTLTEPEVLPAAFPNLLANGSSGIAVGMATNIPPHNLHEL 204 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248 + LI P + LL+++ GPD+PT I+ + I + Y GRG+ R+RA W +E Sbjct: 205 IDGCLHLIRAPNARDETLLEMIPGPDFPTGGVIVEPKESIAQAYATGRGAFRLRARWARE 264 Query: 249 D-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 D +VI+ +P+QV ++++E+IA ++ KK+P++ D+RDES + R+++ PRS Sbjct: 265 DLGRGQWQIVITEIPYQVQKSKLIEKIADLIQTKKVPILADIRDESADD--VRIILEPRS 322 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLN 363 VD + +M LF ++LE + +N+N++ P V +L E+L +L RRD + RR Sbjct: 323 KNVDPEVLMGTLFRLSELETRFSLNMNVLIDGRTPKVCSLREVLRAFLDHRRDVLGRRSR 382 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMS------------------ 405 +RL K+ RL +LEG LVAFLN+D VI+IIR +++PK ALM Sbjct: 383 HRLAKIDHRLEVLEGFLVAFLNLDRVIDIIRYDEDPKAALMREDWSLKHVRATDEADYKT 442 Query: 406 ----RFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLL 461 LTE QAEAIL ++LR L +LEEM++ E+ L ER +L+ +LA E + Sbjct: 443 PAPGEGELTEVQAEAILNMRLRSLRRLEEMELISERDALMAERAELEDLLADEALQWARI 502 Query: 462 KKELQADAQAYGD-----DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGH 516 EL+ + +G RR+ E +S DM+ EP+T+V S+MGW+R+ KGH Sbjct: 503 ADELREVRKQFGKGTALGKRRTDFAVATEMAEVSLEDMIEREPITVVCSKMGWIRAMKGH 562 Query: 517 DIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTL 576 L +K GD + ++ ++ + GR Y + LP RG GEP+ + L Sbjct: 563 VALDQALKFKDGDEGRFIFHAETTDKLLAFGANGRFYTLSCAALPGGRGMGEPIRLMVDL 622 Query: 577 PPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVI 636 P A + + + ++L++ASDAG GF+ +++A+ R GK ++ + + + Sbjct: 623 PNEAELVDLFLHVPGRRLIVASDAGDGFIVPETEVLAQTRTGKQVLNVKSPHRALLARPV 682 Query: 637 EDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQS 696 D + A+ + ++L+F +LP++ +GKG ++ GL+ L Sbjct: 683 AG--DAIAAVGENRKLLVFAADELPEMGRGKGVRLQKYKDG-------GLSDLRSFDRAQ 733 Query: 697 TL-TIHVGKRKIKLRPEELQKVTGERGRRGTL-MRGLQRIDR 736 L + G R + EL + +G+R G + RG R ++ Sbjct: 734 GLQWLDAGGRTRTVADPELAEWSGKRAGTGRMAPRGFPRDNK 775 >UniRef50_O33926 DNA gyrase subunit A n=8 Tax=Thermotogaceae RepID=GYRA_THEMA Length = 804 Score = 799 bits (2063), Expect = 0.0, Method: Composition-based stats. Identities = 251/773 (32%), Positives = 431/773 (55%), Gaps = 37/773 (4%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 M ++ + + +YL YSM VI+ RA+P + DGLKPVQRRI+Y M ELGL ++ Sbjct: 1 MPEILINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPT 60 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VG+V+GKYHPHGD+ Y+A+V MAQPF+ RYPL++GQGN+G+ D AAMRY Sbjct: 61 KKSARIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSID-RDPPAAMRY 119 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RL++ +E +L ++ + T + + NFDGTL+EP++LP+++PN+++NG +GIAVGMAT+I Sbjct: 120 TEARLTRLAEEMLEDIEKNTVNMIDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNI 179 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL E A I LID P+ T+++L+ ++GPD+PT A ++ + +E++K+YE GRG + Sbjct: 180 PPHNLSETVDALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNA-SELKKVYEEGRGRII 238 Query: 241 MRAVWKKED----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 +R ED +VI+ +P+ VS A ++EQIA ++ + + ++RDESD Sbjct: 239 VRGKVHVEDGKRVKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRI 298 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 ++ +P+ + + ++N+L+ T L+ + + + +I RP + NL ++ +L R + Sbjct: 299 VIEIPK--DANEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFE 356 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQ 413 +RRR Y E+ +R H++EGLL A I V++I+RN + + +LM +TE Q Sbjct: 357 VIRRRARYEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESARQSLMETLEITEEQ 416 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 A+AIL+++L L LE ++ E S+L ++ +++ IL + K+ ++KKE Q YG Sbjct: 417 AKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKDEKVKEIMKKEFLYLKQQYG 476 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK------- 526 D RR+ + + ++ +E +++ E V I LS G+++S + + K Sbjct: 477 DPRRTEVTD--QSIEYNEEELIVEEDVVITLSHKGYLKSTPLNSYRSQKRGGKGITVSKL 534 Query: 527 -AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS--ARGQGEPLTGKLTLPPGATVD 583 D + V K+ +F+ + GR+Y + L + +G +T L L + Sbjct: 535 SEDDEVEFVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEKIV 594 Query: 584 H-MLMESDDQKLLMASDAGYGFVCTFNDLVARNRA-GKALITLPENAHVMPPVVIEDASD 641 + + + L++A+ +G + G I + ++ V+ + Sbjct: 595 ALASLNGEGRDLVIATKSGKIKRTALKEFENATSNRGVRAIKIEPGDEIVSARVVNSEKE 654 Query: 642 MLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPP--QSTL 698 L+ T+ G + FPVSD+ ++ + G + I + D + + V+PP + + Sbjct: 655 TLIVATKMGMAIRFPVSDVRRMGRNAAGVQAIKLQPG------DEVVSVDVIPPGEEGEI 708 Query: 699 TIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K K P +L ++ + R GT +R + +++ R GD E Sbjct: 709 LTVTEKGFGKRTPVQLYRI---QRRGGTGLRNISDVNKTGYVVAVRYVRGDEE 758 Score = 79.5 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 89/231 (38%), Gaps = 22/231 (9%) Query: 478 SPLQEREEAKAMSEHDMLPSEPVTIVL-SQMGWVRSAKGHDID-------APGLNYKAGD 529 + E+ + + L E +V+ ++ G ++ + + + + GD Sbjct: 582 TAFLNLEDTEKIVALASLNGEGRDLVIATKSGKIKRTALKEFENATSNRGVRAIKIEPGD 641 Query: 530 SFKAAVKGKS-NQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHM--L 586 +A S + ++ G + + G+ + L PG V + + Sbjct: 642 EIVSARVVNSEKETLIVATKMGMAIRFPVSDV-RRMGRNAAGVQAIKLQPGDEVVSVDVI 700 Query: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAH--VMPPVVIEDASDMLL 644 ++ ++L ++ G+G + R G L + + + V + ++ Sbjct: 701 PPGEEGEILTVTEKGFGKRTPVQLYRIQRRGGTGLRNISDVNKTGYVVAVRYVRGDEEIV 760 Query: 645 AITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPP 694 +T+ G M+ FPVS++ + + KG K+I + G+D ++++ V+ Sbjct: 761 VVTRNGMMIRFPVSEIGVIGRVTKGVKLIEL-------GDDTISKVAVVKD 804 >UniRef50_C5SLW9 DNA topoisomerase IV, A subunit n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SLW9_9CAUL Length = 738 Score = 798 bits (2062), Expect = 0.0, Method: Composition-based stats. Identities = 284/733 (38%), Positives = 435/733 (59%), Gaps = 21/733 (2%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 + E YL Y++ IM RALP + DGLKPV RR++YAM + LN A +KSA+ VG Sbjct: 17 PMGEALSRRYLAYALSTIMHRALPDVRDGLKPVHRRVLYAMHNMRLNPQAAARKSAKVVG 76 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 +V+G +HPHGD + Y+A+V MAQ F+ RYP+VDGQGN+G D S AAMRYTE +++ Sbjct: 77 EVMGNFHPHGDQSIYDALVRMAQWFAQRYPMVDGQGNFGNIDG-DSAAAMRYTECKMTTA 135 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 + LLL + + D+ P +DG +EP +LPA PN+L NG TGIAVGMAT IPPHN+ E+ Sbjct: 136 AMLLLDGIDENAVDFRPTYDGQDEEPVVLPAAFPNLLANGATGIAVGMATSIPPHNVAEL 195 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248 A LI +P T + L+ I+ GPD+PT + R I + YE GRGSVR+RA ++ E Sbjct: 196 IDACKLLIAEPNTDTNGLMAIIPGPDFPTGGICVERREAIYEAYETGRGSVRVRARYEVE 255 Query: 249 D-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 D +++S +P+QV +R++EQ+A + KK P++ D+RDESD E RL++ P++ Sbjct: 256 DLGRGAWRILVSEIPYQVQKSRLIEQLADLIEAKKAPLLGDVRDESDEE--VRLILEPKT 313 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLN 363 +D + +M LF +DLE + N+N++ G P V L IL+ +L RR+ + R+ Sbjct: 314 RNIDPEVLMESLFKISDLETRFAFNMNVLDKTGTPRVMGLKTILTSFLDHRREVLIRQSQ 373 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLR 423 +RL+K+ KRLH+L+GL++AFLN+DEVI IIR ++ PK LM+RF LTE Q + IL+ +LR Sbjct: 374 WRLDKIEKRLHVLDGLMIAFLNLDEVIRIIREDETPKQTLMARFELTEVQVDYILDTRLR 433 Query: 424 HLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQER 483 LA+LEEM I+GE +L KERD L +L SE+K + ++L + RR+ E Sbjct: 434 QLARLEEMAIKGEHDKLSKERDGLLSLLGSEKKQWKRIDEQLTEVRKQLLSARRTTFAEA 493 Query: 484 EEAKAMSE-HDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQP 542 + ++ LP E +T++LS+ GW+R+ KG D L +K GD+ V G + Sbjct: 494 PQGVEVAAIESYLPKEALTVILSERGWIRATKGRVDDPSELKFKEGDNLGFLVPGYNTDK 553 Query: 543 VVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGY 602 ++ + S GR + + LPS RG GEPL L + + ++ M + K LM S GY Sbjct: 554 LLIMTSDGRFFTLGCDKLPSGRGHGEPLQLMLEMEENTRIVNVFMFTPGAKRLMVSKNGY 613 Query: 603 GFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQ 662 GFV D V +AGK+++ + + + D ++ + + ++L++PVS+LP+ Sbjct: 614 GFVMNEEDAVGNKKAGKSVLN-ADGTEAFVALPVTG--DHVVILGENNKVLVYPVSELPE 670 Query: 663 LSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERG 722 +++GKG K+ G+ + + + G K + ++ + G+R Sbjct: 671 MARGKGVKLQGYKDG-------GVKDIAIFDQAGPVQWFDGSGKAR-DFKDWKDFVGKRA 722 Query: 723 RRGTL-MRGLQRI 734 G + RGL+++ Sbjct: 723 SVGKMAPRGLRKL 735 >UniRef50_C7H1V9 DNA gyrase, A subunit n=3 Tax=Clostridiales RepID=C7H1V9_9FIRM Length = 854 Score = 798 bits (2062), Expect = 0.0, Method: Composition-based stats. Identities = 247/741 (33%), Positives = 391/741 (52%), Gaps = 40/741 (5%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 + + E A+L+YSM VI+ RALP + DGLKPV RRI+Y M E G + S ++KSA TVG Sbjct: 20 VKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHAYRKSADTVGA 79 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 VLG YHPHGD++ Y+AMV +AQ FS RYPLVDGQGN+G+ D AA RYTE+R+S+ + Sbjct: 80 VLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDGDPP-AAYRYTEARMSRMA 138 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 +L+++ + T DW PNFD T +EP +LP R PN+L+NG+ GIAVGMAT+IPPHNL EV Sbjct: 139 VEMLTDIDKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEVI 198 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED 249 +A I+ P L L++ ++GPD+PT II R+ IR Y GRG + +R E+ Sbjct: 199 DGCVAYIEDPDIDLPGLMEHIKGPDFPTAG-IIMGRSGIRAAYATGRGKITLRGRATIEE 257 Query: 250 G-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 ++++ +P+ V+ AR++E IA ++ K++ + DL DE++ + ++ V + Sbjct: 258 KKNGRAQIIVTEIPYMVNKARLIENIADLVKEKRIEGISDLNDETNRKGMRIVIDVRK-- 315 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 364 + V+N L+ T L+ + + + I P V L +++ +++ F+ + VRRR Y Sbjct: 316 DANPQVVLNQLYQYTQLQDTVGVIMLAIDHK-VPKVMTLKQMIQKYVEFQDEVVRRRTQY 374 Query: 365 RLEKVLKRLHILEGLLVAFLNIDEVIEIIR----NEDEPKPALMSRFGLTETQAEAILEL 420 L+K +R HILEGL A +DE+I IR E K A+M +FG + QA+AI++L Sbjct: 375 DLKKARERAHILEGLKKATDIVDELIATIRACKGGMSEAKAAIMEQFGFDDPQADAIVKL 434 Query: 421 KLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPL 480 +L LA LE +KI E L + + ILA + ++ ++K EL + +GDDRR+ + Sbjct: 435 QLGRLAGLEILKIEEELGSLNAKIRDWEEILADDARVLEIVKSELLEMKRRFGDDRRTEI 494 Query: 481 QEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS--------AKGHDIDAPGLNYKAGDSFK 532 + + D++ E L++ G+++ K G+ K D + Sbjct: 495 E--TVTGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQKRGGRGISGMTRKEEDIVQ 552 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLMESD 590 G ++ V+FV GR + I T+ +G + L L G V +ML +S Sbjct: 553 EMFVGSTHDYVLFVTDKGRLFRIKGYTIAEGSRTSKGTNIVNLLQLAEGEKVTNMLCQSK 612 Query: 591 D-----QKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLA 645 D + M + G ++G I L E + + DML+ Sbjct: 613 DTANEGGFVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNEGDAL-AWTRLTSGHDMLIV 671 Query: 646 ITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGK 704 T+ G+ + F D + + G G + I + D + + + +T+ Sbjct: 672 ATRNGQAIRFNEEDARPMGRSGHGVRAIKLAEG------DEVVGVCICRENATILTVTEN 725 Query: 705 RKIKLRPEELQKVTGERGRRG 725 K + + ++T RG +G Sbjct: 726 GKGRRSDIDTYRIT-ARGGKG 745 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 66/190 (34%), Gaps = 12/190 (6%) Query: 500 VTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSY 553 ++++ G ++ G+ GD+ + ++ G++ Sbjct: 620 FVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDMLIVATRNGQAI 679 Query: 554 AIDPITLPSARGQGE--PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 611 AR G + L G V + + ++ +L ++ G G + Sbjct: 680 R---FNEEDARPMGRSGHGVRAIKLAEGDEVVGVCICRENATILTVTENGKGRRSDIDTY 736 Query: 612 VARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNK 670 R GK + + + V I D D +L +Q G ++ +++P S+ G G + Sbjct: 737 RITARGGKGIRNYDASKDKVAAVKIVDDVDDVLLSSQEGIIIRLHANEIPVQSRYGSGVR 796 Query: 671 IINIPSAEAA 680 ++ + + Sbjct: 797 VMRLGENDKV 806 Score = 52.2 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 19/187 (10%) Query: 470 QAYGDDRRSPLQE--REEAKAMSEHDMLPSEPVTIVLSQMG--------WVRSAKGHDID 519 + Y + R+S L E A++ + + IV ++ G R Sbjct: 636 EQYANIRKSGLIGIALNEGDALAWTRLTSGHDMLIVATRNGQAIRFNEEDARPMGRSGHG 695 Query: 520 APGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYA--IDPITLPSARGQGEPLTGKLTLP 577 + GD + N ++ V G+ ID + + G+G + Sbjct: 696 VRAIKLAEGDEVVGVCICRENATILTVTENGKGRRSDIDTYRITARGGKG--IRNY--DA 751 Query: 578 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNR--AGKALITLPENAHVMPPVV 635 V + + D +L++S G N++ ++R +G ++ L EN VM + Sbjct: 752 SKDKVAAVKIVDDVDDVLLSSQEGIIIRLHANEIPVQSRYGSGVRVMRLGENDKVM-VLA 810 Query: 636 IEDASDM 642 D D Sbjct: 811 RTDHDDE 817 >UniRef50_C5JAG1 DNA topoisomerase IV subunit A n=1 Tax=uncultured bacterium RepID=C5JAG1_9BACT Length = 765 Score = 798 bits (2061), Expect = 0.0, Method: Composition-based stats. Identities = 297/733 (40%), Positives = 437/733 (59%), Gaps = 18/733 (2%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 ++ E A+ E+ YL Y++ I+ R+LP + DGLKPV RRI++AM L L+ + FK Sbjct: 6 AEKIEPAAIRGELESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALRLDPGSGFK 65 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VGDV+GK+HPHGD A Y+AMV +AQ F+ RYPLVDGQGN+G D AAMRYT Sbjct: 66 KSARVVGDVIGKFHPHGDQAAYDAMVRLAQDFAQRYPLVDGQGNFGNVDGDG-AAAMRYT 124 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+RL+ ++ LL +L + T D +P +DG+ +EP +LPAR PN+L NG TGIAVGM+T IP Sbjct: 125 EARLTPVAQALLEDLDRQTVDLIPTYDGSQEEPVVLPARFPNLLANGATGIAVGMSTAIP 184 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHN EV AA+ LI P + +L+ + GPD+PT ++ E+R++Y GRG +R+ Sbjct: 185 PHNAGEVLAAALHLIRHPDCGVAELMKHLPGPDFPTGGVLVAEPEELREVYATGRGGLRL 244 Query: 242 RAVWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 RA W++E +V++ +P+ V R++E+IA + ++K P + D+RDESD + R Sbjct: 245 RARWEQEMVGHGTWRLVVTEIPYHVQKGRLIERIAQLILDRKCPFLSDVRDESDAK--VR 302 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 +V+ PRS +D +++M LF +DLE +NLN++ + RP V +L +L WL R Sbjct: 303 IVLEPRSRGLDPEKIMAFLFKNSDLEVRINVNLNVVTAEARPEVMDLKGLLRAWLDHRFQ 362 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEA 416 RR + LE++ +RLH+L+ L LNID VI II+ D+P PALM RFG+ QAEA Sbjct: 363 VHTRRATHDLERIRERLHLLQAYLTVHLNIDAVIAIIKAHDDPAPALMQRFGMDSEQAEA 422 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDR 476 +L L+LR L +LEEM IR E E E +L +LA M ++ E++ + + D R Sbjct: 423 VLNLRLRALRRLEEMSIRKEMGEKEARAAELSAMLADPTLMWAAVQDEVKRTRKEFSDGR 482 Query: 477 RSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVK 536 R+ + + D++ EP+T VLS+ GW+++ KGHDID + +K D + AVK Sbjct: 483 RTRMAGPAPEIDLRPEDLIQKEPLTAVLSRKGWIKALKGHDIDLEKIRFKEEDGLERAVK 542 Query: 537 GKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLM 596 G S+Q V F+ ++G+ Y++ LPS + GEPLT L PG + ML + + + Sbjct: 543 GYSHQTVTFLAASGKVYSLLGDRLPSGKRFGEPLTVLFELDPGDRILWMLAVDPEGEYFV 602 Query: 597 ASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFP 656 + G GF DLVA R GK +++L E + + A+ + AI+ R+L+ Sbjct: 603 TTRLGQGFRIRGRDLVANQRTGKQVVSLREGDQPLHVHPVRGAA--VAAISHGRRLLICR 660 Query: 657 VSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQK 716 + + P L +GKG +I N+ E GL PQ+ L + GKR +L EL K Sbjct: 661 LEEFPLLGRGKGVRIQNLGRGE------GLVDAMTFDPQAGLVLDSGKRTRQLT--ELDK 712 Query: 717 VTGERGRRGTLMR 729 G RG RG ++ Sbjct: 713 WQGTRGSRGAMLP 725 >UniRef50_P48372 DNA gyrase subunit A n=78 Tax=Bacteria RepID=GYRA_PSEAE Length = 923 Score = 796 bits (2055), Expect = 0.0, Method: Composition-based stats. Identities = 266/855 (31%), Positives = 424/855 (49%), Gaps = 122/855 (14%) Query: 1 MSDMAERL---ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 57 M ++A+ + + + + +YL+Y+M VI+ RALP DGLKPV RR++YAMSELG + + Sbjct: 1 MGELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWN 60 Query: 58 AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 117 +KKSAR VGDV+GKYHPHGD+A Y+ +V MAQPFS RY LVDGQGN+G+ D + AA Sbjct: 61 KPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG-DNAAA 119 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 MRYTE R++K + LL++L + T DWVPN+DGT Q P ++P ++PN+L+NG++GIAVGMA Sbjct: 120 MRYTEVRMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMA 179 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T+IPPHNL EV +AL+D P T+D+L+ + GPD+PT II RA I + Y GRG Sbjct: 180 TNIPPHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAG-IINGRAGIIEAYRTGRG 238 Query: 238 SVRMRAVWKKED-------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESD 290 + +RA E+ ++I+ LP+Q++ AR++E+IA ++ KK+ + +LRDESD Sbjct: 239 RIYIRARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESD 298 Query: 291 HENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEW 350 + R+VI R V + V+N+L+A T L+ + IN+ + +DG+P NL ++L + Sbjct: 299 KDG-MRVVIELRRGEVG-EVVLNNLYAQTQLQSVFGINV-VALVDGQPRTLNLKDMLEVF 355 Query: 351 LVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMS-- 405 + RR+ V RR Y L K +R HILEG VA NID VIE+I++ E K L++ Sbjct: 356 VRHRREVVTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATA 415 Query: 406 --------------------------------RFGLTETQAEAILELKLRHLAKLEEMKI 433 ++ L+ QA+AILEL+L L LE K+ Sbjct: 416 WESSAVEAMVERAGADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKL 475 Query: 434 RGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHD 493 E E+ +L IL + ++ ++++EL+A +GD RR+ + + ++ D Sbjct: 476 LSEYQEILNLIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVASQ--VDLTIAD 533 Query: 494 MLPSEPVTIVLSQMGWVRSAK--------GHDIDAPGLNYKAGDSFKAAVKGKSNQPVVF 545 ++ E + +S G+ +S K D + + S+ ++ Sbjct: 534 LITEEDRVVTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLL 593 Query: 546 VDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHML----------------- 586 S G+ Y + +P A +G PL L L G + ML Sbjct: 594 FSSKGKVYWLRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDL 653 Query: 587 -----------------------------MESDDQKLLMASDAGYGFVCTFNDLVARNRA 617 E + MA+ G + Sbjct: 654 DEAEGAVLEGEVVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSS 713 Query: 618 GKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPS 676 G + L E ++ I D + ++ + AG+++ F S + + + +G + + + Sbjct: 714 GLIALKLEEGDTLIAA-AITDGAKEVMLFSSAGKVIRFAESVVRIMGRNARGVRGMRLGK 772 Query: 677 AEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDR 736 + L + + + + + K P L K RGR G + + +R Sbjct: 773 GQQ------LISMLIPESGAQILTASERGFGKRTP--LSKF-PRRGRGGQGVIAMVTNER 823 Query: 737 VE-IDSPRRASSGDS 750 + + + G+ Sbjct: 824 NGALIAAVQVQEGEE 838 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 73/179 (40%), Gaps = 10/179 (5%) Query: 514 KGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRS--YAIDPITLPSARGQGEPLT 571 + L + GD+ AA + V+ S G+ +A + + +G Sbjct: 709 RPRSSGLIALKLEEGDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIMGRNARG---V 765 Query: 572 GKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAH-- 629 + L G + ML+ ++L AS+ G+G + R R G+ +I + N Sbjct: 766 RGMRLGKGQQLISMLIPESGAQILTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERNG 825 Query: 630 -VMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGL 686 ++ V +++ + ++ I+ G ++ V ++ + +G +I + S E G + + Sbjct: 826 ALIAAVQVQEGEE-IMLISDQGTLVRTRVDEVSLSGRNTQGVTLIKLASDEVLVGLERV 883 >UniRef50_A1V9C1 DNA gyrase subunit A n=18 Tax=Bacteria RepID=A1V9C1_DESVV Length = 856 Score = 795 bits (2053), Expect = 0.0, Method: Composition-based stats. Identities = 254/770 (32%), Positives = 408/770 (52%), Gaps = 41/770 (5%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 +++++ + +YL YS+ VI+ RA+P + DGLKPV RRI++A ELG + KKSAR Sbjct: 24 QQISIEKELRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNAYNRPHKKSAR 83 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 VGDV+GKYHPHGDSA Y+A+V MAQ FS R PLVDGQGN+G+ D + AAMRYTE R+ Sbjct: 84 IVGDVIGKYHPHGDSAVYDAIVRMAQEFSMRDPLVDGQGNFGSIDG-DAAAAMRYTEVRM 142 Query: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 S+ + ++++ + T D+ PN+D TL EP +LP R+PN+LLNG+TGIAVGMAT+IPPHNL Sbjct: 143 SRLAGEFIADIEKETVDFRPNYDNTLLEPVVLPTRVPNLLLNGSTGIAVGMATNIPPHNL 202 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245 E+ A + L+D T+D L+D V+GPD+PT + + + Y GRG+V++R Sbjct: 203 GELCNALLHLLDDDACTIDDLMDHVKGPDFPTGGFVYAGQ-GLVDAYTTGRGTVKVRGKV 261 Query: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 + E+ A+VI +P+ ++ + ++E+IAA + +++ V DLRDESD + R+VI Sbjct: 262 EIEERKKGFQAIVIREIPYGLNKSSLVEKIAALVNERRIDGVADLRDESDRKG-IRVVID 320 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360 + + D V+N L+ T LE SY IN+ + +D RP + +L LS +L RR+ + R Sbjct: 321 LKRGTI-PDIVVNALYKYTPLESSYGINMLAV-VDNRPQLLDLKSALSHFLEHRREIIIR 378 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQAEAI 417 R Y L K R HILEGL +A NIDEV+ +IR E K LM RFGL+E Q++AI Sbjct: 379 RTRYDLRKAEARAHILEGLRIALDNIDEVVALIRASATPQEAKDRLMQRFGLSEAQSQAI 438 Query: 418 LELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRR 477 L+++L+ L LE K+ E EL K+ + + IL + + ++++E Y RR Sbjct: 439 LDMRLQRLTNLEHEKLLDEYRELLKKIEYFRSILENIEVLRQVMREEFTEIRDTYATKRR 498 Query: 478 SPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK--------AGD 529 + + +E + ++ D++P + V I LS+ G+++ + K D Sbjct: 499 TEVL-MDELEGIAIEDLIPDDDVVITLSRRGYIKRTTLDNYQQQRRGGKGIAGLHTSDDD 557 Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLM 587 + + ++Q ++ + G+ + + + +G + L L V +L Sbjct: 558 FVQEFLTTTNHQYLLLFTNHGKMHQLKVHQVAEGSRTAKGVHIANLLPLEKDEWVTTVLS 617 Query: 588 ---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLL 644 ++D+ L + G + + + G + L ++ ++ I + D ++ Sbjct: 618 VREFAEDRFFLFVTKRGMVKRSSASLYARARKGGLIAVGLRDDDELIMVREIHN-DDHVV 676 Query: 645 AITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI--- 700 T G + F D+ + + G K + + G+D + VLP T T Sbjct: 677 LTTGGGMAIRFACPDVRPMGRSATGVKGVALS------GDDRVVACAVLPGDDTSTEIMS 730 Query: 701 HVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDS 750 K EL + RG +G ++ + + D Sbjct: 731 ISSNGYGKRTRIELYR-LQSRGGKG--VKNFRVTPKTGDVIGAMPVRDDE 777 Score = 79.9 bits (196), Expect = 4e-13, Method: Composition-based stats. Identities = 32/216 (14%), Positives = 74/216 (34%), Gaps = 19/216 (8%) Query: 496 PSEPVTIVLSQMGWVRS------AKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDST 549 + + +++ G V+ A+ + + D + ++ VV Sbjct: 622 AEDRFFLFVTKRGMVKRSSASLYARARKGGLIAVGLRDDDELIMVREIHNDDHVVLTTGG 681 Query: 550 GRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLMESDDQ---KLLMASDAGYGF 604 G + P R G TG + L V + D +++ S GYG Sbjct: 682 GMAIRFAC---PDVRPMGRSATGVKGVALSGDDRVVACAVLPGDDTSTEIMSISSNGYGK 738 Query: 605 VCTFNDLVARNRAGKALITL---PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLP 661 ++R GK + P+ V+ + + D + L+ +T +++ V ++ Sbjct: 739 RTRIELYRLQSRGGKGVKNFRVTPKTGDVIGAMPVRD-DEALVLLTSTNKIIRMSVDEVR 797 Query: 662 QLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQS 696 + + G ++ + G D + + V+ + Sbjct: 798 SVGRATMGVMLVRLDEGAIVVGFDRVDEREVVEESA 833 >UniRef50_Q59749 DNA topoisomerase 4 subunit A n=64 Tax=Alphaproteobacteria RepID=PARC_RHIME Length = 758 Score = 794 bits (2050), Expect = 0.0, Method: Composition-based stats. Identities = 291/752 (38%), Positives = 440/752 (58%), Gaps = 33/752 (4%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 D + + L E YL Y++ IM RALP + DGLKPV RRI++AMSE+GL ++ FKK Sbjct: 13 DNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFKK 72 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 AR VGDV+GK+HPHGD + Y+A+V +AQ FS RYP+VDGQGN+G D + AA RYTE Sbjct: 73 CARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDG-DNAAAYRYTE 131 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +++++ + LLL + Q D+ P ++ QEP +LP PN+L NG +GIAVGMAT IPP Sbjct: 132 AKMTEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGASGIAVGMATSIPP 191 Query: 183 HNLREVAQAAIALIDQPKTTLDQLL--------DIVQGPDYPTEAEIITSRAEIRKIYEN 234 HN E+ AA+ LI P T++ LL ++GPD+PT I+ SRA + + Y Sbjct: 192 HNAHELCDAALHLIKHPDATVEDLLFDPANPQRGGIEGPDFPTGGVIVESRASMAESYRT 251 Query: 235 GRGSVRMRAVWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDES 289 GRG R+RA W ED +V++ +P+QV +R++E+IA + +KLP+++D+RDES Sbjct: 252 GRGGFRVRARWAVEDLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDES 311 Query: 290 DHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSE 349 + R+V+VP+S VD + +M LF T+LE +N+N++ + P V L E+LSE Sbjct: 312 AED--VRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLSE 369 Query: 350 WLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGL 409 WL RR+ ++RR +RL + +RL IL G L+A+LNIDEVI IIR EDEPK ++ RFGL Sbjct: 370 WLAHRREVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEPKAVMIERFGL 429 Query: 410 TETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADA 469 T+ QAEAIL ++LR L KLEE +IR E L KE+ +++ +LAS K + E+ Sbjct: 430 TDVQAEAILNMRLRSLRKLEEFEIRTEFDSLSKEKAEIEALLASGDKQWQAVAWEIGEVK 489 Query: 470 QAYGD-----DRRSPLQEREEAKAMS-EHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGL 523 + + RRS + +A + + M+ EP+T+V+S+ GW+R+ KGH D L Sbjct: 490 KKFAKATELGKRRSTFSDAPDADVEAIQQAMIEKEPITVVISEKGWIRALKGHIADTSSL 549 Query: 524 NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVD 583 +K GD K + ++ ++ + G++Y + LP RG GEPL + + V Sbjct: 550 QFKDGDGLKVSFPAQTTDKILIFTTGGKAYTLGGDKLPGGRGHGEPLRIMVDMENDQDVL 609 Query: 584 HMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDML 643 + +KL+++S AG GFV T +D+VA R GK ++ + V ++ D L Sbjct: 610 TAFVHDPARKLIVSSTAGNGFVVTESDIVANTRKGKQVMNVTMPDEAKLVVPVKG--DHL 667 Query: 644 LAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-HV 702 + + +ML+FP+ +P++++GKG ++ G++ + LT Sbjct: 668 AVVGENRKMLVFPLVQVPEMARGKGVRLQRYKDG-------GVSDIRSFAIAEGLTWEDS 720 Query: 703 GKRKIKLRPEELQKVTGERGRRG-TLMRGLQR 733 R +EL + G+R G + +G R Sbjct: 721 AGRVFTKTRDELIEWMGDRAGAGRVVPKGFPR 752 >UniRef50_A4JTQ2 DNA topoisomerase IV subunit A n=34 Tax=Proteobacteria RepID=A4JTQ2_BURVG Length = 808 Score = 790 bits (2040), Expect = 0.0, Method: Composition-based stats. Identities = 324/750 (43%), Positives = 471/750 (62%), Gaps = 33/750 (4%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 R+ + + E AYL+Y+M V+ R LP + DG KPVQRR++YAM+++GL A+AK KSAR Sbjct: 56 RIPIGGWAERAYLDYAMSVVRGRTLPDVEDGQKPVQRRLLYAMNDMGLTATAKPVKSARV 115 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VGDVLGKYHPHGD + Y+A+V +AQ FS RYPL+DGQGN+G+ D AAMRYTE+RL+ Sbjct: 116 VGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDGDG-AAAMRYTEARLT 174 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 +++LLL+E+ QGT D+ PN+DG +EP +LPARLP +LLNG +GIAVGMATDIP HNLR Sbjct: 175 PFADLLLAEIDQGTVDFQPNYDGAFEEPSLLPARLPVLLLNGASGIAVGMATDIPSHNLR 234 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 EVA A LI +P T ++ ++ GPDYP A+II+ A+I K+YE GRGS+R+RA W Sbjct: 235 EVADACSLLIRRPDATFGDVMSVLPGPDYPGGAQIISDIADIHKVYEGGRGSLRVRARWS 294 Query: 247 KED-----GAVVISALPHQVSGARVLEQIAAQ----MRNKK--------------LPMVD 283 E + ++ LPH VS +VLE+I ++ K L ++D Sbjct: 295 LEQLARGQWQIAVTELPHGVSTQKVLEEIEELTNPKIKAGKKALTQEQGNMKALLLSVLD 354 Query: 284 DLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNL 343 +RD+SD ++P R+V P S+R +Q+MN L A T LE + +NL IGLDGRP K + Sbjct: 355 SVRDDSDEKHPVRIVFEPHSSRQTPEQLMNVLLAHTSLECNASVNLVTIGLDGRPQQKGI 414 Query: 344 LEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPAL 403 + L+EW+ FR TV RR +RL +V +R+HIL+G ++AFLNID+VI++IR DEPK L Sbjct: 415 VPALTEWVEFRYRTVTRRTEHRLAEVERRIHILDGRMIAFLNIDQVIKVIRESDEPKRDL 474 Query: 404 MSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKK 463 ++ F L+E QAE ILE++LR LA+LE +KI E ++L+ E+ LQ +LA M N + K Sbjct: 475 IATFHLSEVQAEDILEIRLRQLARLEGIKIEKELAQLQDEQRHLQSLLADRAAMTNQILK 534 Query: 464 ELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGL 523 E++AD Q +GDDRR+ ++ E+ + + +PVTI++S+ GW+R+ GH ID L Sbjct: 535 EIEADKQKFGDDRRTLIESAEKVTSGAVVPT-ADDPVTIIVSRSGWLRARSGHGIDISTL 593 Query: 524 NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVD 583 +KAGD A+++ +++ + D+ GR Y + +P+ RG G PLT + L G + Sbjct: 594 TFKAGDDLLASIETRTSTSLAVFDTNGRCYNVASALIPTGRGDGVPLTSLIELQGGGRLT 653 Query: 584 HMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDML 643 H+++ L+AS GYG+VC DL+ R +AGKA TL + PP I D + Sbjct: 654 HVIVIDQTANYLIASSGGYGYVCAGADLLTRQKAGKAFATLEPGEVMHPPAKIAG--DTV 711 Query: 644 LAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVG 703 A+ GR+++FP+S++ + KGKG K++ + + E L + + S + Sbjct: 712 SAVCSGGRLVLFPLSEVKVMPKGKGVKLMELEARET------LVAVAIGDGASCIVSTTS 765 Query: 704 KRKIKLRPEELQKVTGERGRRGTLMRGLQR 733 + I L L K R R+G + G + Sbjct: 766 GKPIALTGTALDKYRLHRARKGCQLPGKAK 795 >UniRef50_Q1RGX8 DNA topoisomerase 4 subunit A n=15 Tax=Rickettsia RepID=PARC_RICBR Length = 736 Score = 789 bits (2037), Expect = 0.0, Method: Composition-based stats. Identities = 281/745 (37%), Positives = 446/745 (59%), Gaps = 27/745 (3%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 E + YL Y++ IM R+LP + DGLKPV RR++YAM +L L ++ +KK Sbjct: 5 KIENIDFGSALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYKKC 64 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VGDV+GKYHPHGD A Y+ +V +AQ FS RYPL+DGQGN+G+ D + AAMRYTES Sbjct: 65 ARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDG-DNAAAMRYTES 123 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 R+++ LL+ ++ + T D+ +D + EP ++PA PN+L NG+ GIAVGMAT+IPPH Sbjct: 124 RMTEICTLLMEDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIPPH 183 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL E+ A + LID PK + +++ ++GPD+PT II I Y GRGS R+RA Sbjct: 184 NLHELCDALMHLIDHPKAEISDIMNFIKGPDFPTGGIIIDKSDVITSAYMTGRGSFRVRA 243 Query: 244 VWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 W+KE+ +V++ +P+QV ++++EQIA +++KK+P+V ++RDES + RLV Sbjct: 244 RWEKEELNYGVYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDES--TDIIRLV 301 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 I PR D VM LF T+LE ++N+N+IG + P V N+LE+L E+L R++ + Sbjct: 302 IEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPKVMNILEVLQEFLSHRQNII 361 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAIL 418 RR Y L K+ RL ILEGL +A+LN+DE+I+IIR EDEPK +M RF LTE Q EAIL Sbjct: 362 TRRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAIMMQRFQLTEIQVEAIL 421 Query: 419 ELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG----- 473 +LR L KLEE +I E S L+K++ L+ IL + +++ ++KKE++A +G Sbjct: 422 NTRLRSLRKLEEQEIITEHSNLQKQQAILEEILNNPKELWKVVKKEIKAVQAKFGLNTTI 481 Query: 474 DDRRSPLQEREEA-KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFK 532 RR+ ++ + + + EP+TI+ S+MGWVRS KGH+ D + YK GD+ K Sbjct: 482 GARRTSFEQVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNNDLSSIKYKEGDAEK 541 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQ 592 ++ + ++ + S GR + + + +G GE + + + + +L+ D Sbjct: 542 FILEAYTTDKILIISSEGRFFTLLADNISKGKGTGESIKLLVDIGNND-ITEILVYKPDH 600 Query: 593 KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRM 652 LL+AS G GFV N+++A+ ++GK ++ +P+ + + + D + I ++ ++ Sbjct: 601 LLLLASSIGKGFVVNSNEVMAQTKSGKQIMNVPDGHTCIACLPVNG--DSVACIGESRKL 658 Query: 653 LMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPE 712 L+F + ++P++ KG+G + +A+ L + + + L+ + G + + Sbjct: 659 LVFNIDEIPEMKKGQGVTLQKFKNAK-------LLDIKIFNREDGLSWNSGGKV--KLEK 709 Query: 713 ELQKVTGERGRRGTLMR-GLQRIDR 736 + G+RG G L G + +R Sbjct: 710 NIIAFLGKRGSTGKLPPMGFPKNNR 734 >UniRef50_C7MEZ8 DNA gyrase subunit A n=21 Tax=Actinobacteridae RepID=C7MEZ8_BRAFD Length = 943 Score = 788 bits (2036), Expect = 0.0, Method: Composition-based stats. Identities = 244/780 (31%), Positives = 395/780 (50%), Gaps = 44/780 (5%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 D ++ L+ + +YL+Y+M VI+ RALP + DGLKPV RRIVYAM + G F K Sbjct: 68 DRITQIDLNHEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRIVYAMFDGGYRPDRSFSK 127 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 A+ VG+V+G YHPHGDSA Y+AMV + QP+S RYPL+ GQGN+G+ AA RYTE Sbjct: 128 CAKVVGEVMGNYHPHGDSAIYDAMVRLVQPWSMRYPLILGQGNFGS-AGDDGAAAPRYTE 186 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +++ + L+ ++ Q T D N+D T+ EP +LPAR PN+L+NG+ GIAVGMAT+IPP Sbjct: 187 CKMAPLALELVRDIEQDTVDMQGNYDNTVDEPTVLPARFPNLLVNGSAGIAVGMATNIPP 246 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLD----IVQGPDYPTEAEIITSRAEIRKIYENGRGS 238 HNLREVA A L+ + T +LL+ ++GPD+P+ A I+ + I Y GRGS Sbjct: 247 HNLREVADAVQWLLKNHEATKPELLEACLQRIKGPDFPSGATIV-GTSGIEDAYRTGRGS 305 Query: 239 VRMRAVWKKED----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENP 294 + RAV E+ ++V++ LP+QV+ + +IA ++ K+ + D+ DE+ Sbjct: 306 ITQRAVVSTEEINGRMSLVVTELPYQVNPDTLARKIAEMVKLGKIQGIADITDETSGRTG 365 Query: 295 TRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFR 354 RLVI + + V V+N+L+ T L++++ N+ + +G P ++ + EW + Sbjct: 366 QRLVITLKRDAV-AKVVLNNLYKHTQLQENFSANMLALA-NGVPRTLSIDSFVREWTKHQ 423 Query: 355 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTE 411 D + RR +RL K +++HI G L A +DEVI +IR DE + LM + E Sbjct: 424 IDVIVRRTKFRLRKAEEQIHIFRGYLKALDALDEVIALIRRSPDVDEARTGLMDLLEIDE 483 Query: 412 TQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQA 471 QA AIL ++LR LA LE KI E L+ ++ ILA ++ +++ +EL Sbjct: 484 IQANAILAMQLRRLAALERQKIIEEHDRLQALIEEYTAILADPQRQRDIVSEELAEIVDR 543 Query: 472 YGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GL 523 +GDDRR+ + A M D++P E + + +++ G+V+ + A G Sbjct: 544 FGDDRRTEIL--PFAGDMEMEDLIPEEDMVVTITRGGYVKRTREDQYRAQKRGGKGVRGA 601 Query: 524 NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGAT 581 + + D + +++ ++F + GR Y LP A +G+ + + P Sbjct: 602 SLREDDVVEHFFTTTTHRWLLFFTNQGRVYRAKGYELPEAPRDAKGQHVANLMAFQPDEN 661 Query: 582 VDHMLM---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE--------NAHV 630 + +L D Q L++A+++G + G I L + V Sbjct: 662 IASVLAIDSYEDAQHLVLATESGLVKKTPMPAFDSSRTGGIIAINLRDIDGPEGPQPDRV 721 Query: 631 MPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLY 690 + + ++ D +L +++ G+ + FP D G+ + R +D L + Sbjct: 722 ISARAV-NSDDEILLVSRNGQSVRFPADDGTLRPTGRATSGVT---GMKFRHQDTLLAMD 777 Query: 691 VLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDS 750 V+ P S + K + ++ G RG G + L DR + D Sbjct: 778 VIRPDSFVITVTDGGFAKRTTVDEYRLQG-RGGLGIRVAKLPD-DRGHLVGAAVVEETDE 835 Score = 69.1 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 81/221 (36%), Gaps = 22/221 (9%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG------LNYKAGD---- 529 Q E ++ D ++ ++ G V+ D+ +N + D Sbjct: 656 FQPDENIASVLAIDSYEDAQHLVLATESGLVKKTPMPAFDSSRTGGIIAINLRDIDGPEG 715 Query: 530 ----SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVD 583 +A S+ ++ V G+S + R G +G + T+ Sbjct: 716 PQPDRVISARAVNSDDEILLVSRNGQSVRFPADD-GTLRPTGRATSGVTGMKFRHQDTLL 774 Query: 584 HMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAG--KALITLPEN-AHVMPPVVIEDAS 640 M + D ++ +D G+ T ++ + R G + LP++ H++ V+E+ Sbjct: 775 AMDVIRPDSFVITVTDGGFAKRTTVDEYRLQGRGGLGIRVAKLPDDRGHLVGAAVVEETD 834 Query: 641 DMLLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAA 680 ++L+ + + GR++ V+++P + G + Sbjct: 835 ELLVVM-ERGRVVRSKVAEVPAKGRTTMGVVFAKPDKGDRI 874 >UniRef50_C6X523 DNA gyrase subunit A n=20 Tax=Bacteria RepID=C6X523_FLAB3 Length = 884 Score = 787 bits (2034), Expect = 0.0, Method: Composition-based stats. Identities = 236/749 (31%), Positives = 397/749 (53%), Gaps = 42/749 (5%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 + + + +++Y++YSM VI+ RALP + DGLKPV RR++Y M L + ++ K KSAR V Sbjct: 11 INIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLNVFSNRKHLKSARIV 70 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 GDVLGKYHPHGDS+ Y+AMV MAQP+S RYP VDGQGN+G+ D AAMRYTE++L K Sbjct: 71 GDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDGDPP-AAMRYTEAKLKK 129 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 S+ +L++L + T D+ NFD ++ EP ++P ++P +L+NGT+GIAVGMAT++ PHNL E Sbjct: 130 ISDEILADLDKDTVDFQNNFDDSMTEPTVMPTKIPTLLVNGTSGIAVGMATNMAPHNLSE 189 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 A +A ID + T+D+L+ + PD+PT II +R + GRG + +RA Sbjct: 190 SIDAIVAYIDNKEITIDELMKHIIAPDFPTGG-IIYGYDGVRDAFHTGRGRIVLRAKINF 248 Query: 248 ED----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 E+ A++++ +P+QV+ A ++ + A ++++K+P + ++RDESD + R+V + Sbjct: 249 EEVGNRSAIIVTEIPYQVNKAEMIARTAELVKDEKIPGIYEIRDESDRQG-LRIVYELKH 307 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLN 363 + + + V+N L+ T L+ S+ +N N+ + GRP NL I+ ++ R + V RR Sbjct: 308 DAI-PNVVLNMLYKYTSLQTSFSVN-NIALVKGRPEQLNLKNIIHHFVDHRHEVVIRRTE 365 Query: 364 YRLEKVLKRLHILEGLLVAF---LNIDEVIEIIRNED---EPKPALMSRFGLTETQAEAI 417 + L+K +R HILEG + ++D+ I IIR+ E K LM F L++ QA+AI Sbjct: 366 FELKKAKERAHILEGFMKVIGTQDDLDKAIAIIRHSSNPAEAKDGLMKEFDLSDLQAQAI 425 Query: 418 LELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRR 477 L+L+L L +E KIR E E+ + ILA+E + ++K EL + YGD+RR Sbjct: 426 LDLRLARLTGMELDKIRAEYDEIMNLIRDFEDILANESRRFEIIKAELIEMKEKYGDERR 485 Query: 478 SPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAK--------GHDIDAPGLNYKAGD 529 S + MS D++P E V + +S G+++ + + D Sbjct: 486 SEIDYS--GGEMSIEDLIPDEKVVLTISHAGYIKRTSLSEYKVQTRGGVGNRAATTRDED 543 Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHMLM 587 + V ++Q ++F G+ + + +P +G + + + P + + Sbjct: 544 FLEYIVAATNHQYMLFFTEKGKCFWLRVFEIPEGSKISKGRAVQNLINIEPDDKIKAYIR 603 Query: 588 ESD--------DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDA 639 +D ++M + G + G I + +N ++ + Sbjct: 604 TNDLKDAEYINQMNVVMVTKNGTIKKTSLEAYSRPRTNGVNAIEIRDNDQLLGARL-TSG 662 Query: 640 SDMLLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTL 698 ++ T+ G+ + FP + +G G + I++ + G + + T+ Sbjct: 663 DSEIMIATKNGKCIRFPEEKARAVGRGSIGVRGISLEDDDEVIGMIVVNDV----ENETV 718 Query: 699 TIHVGKRKIKLRPEELQKVTGERGRRGTL 727 + K K E +VT RG +G + Sbjct: 719 LVVSEKGYGKRTAVEDYRVT-NRGGKGVI 746 Score = 90.3 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 84/214 (39%), Gaps = 13/214 (6%) Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNY------KAGDSFK 532 ++ + + + + V +++++ G ++ P N + D Sbjct: 597 KIKAYIRTNDLKDAEYINQMNV-VMVTKNGTIKKTSLEAYSRPRTNGVNAIEIRDNDQLL 655 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESD-- 590 A + ++ G+ P A G+G ++L V M++ +D Sbjct: 656 GARLTSGDSEIMIATKNGKCIRF-PEEKARAVGRGSIGVRGISLEDDDEVIGMIVVNDVE 714 Query: 591 DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP--ENAHVMPPVVIEDASDMLLAITQ 648 ++ +L+ S+ GYG D NR GK +ITL E + + D L+ I + Sbjct: 715 NETVLVVSEKGYGKRTAVEDYRVTNRGGKGVITLNITEKTGNLIAIQNVTDEDGLMIINK 774 Query: 649 AGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAAR 681 +G + ++++ + + +G K+IN+ ++ Sbjct: 775 SGVAIRMSMNEMRVMGRNTQGVKVINLKGNDSIA 808 >UniRef50_A9GW54 DNA gyrase subunit A n=2 Tax=Proteobacteria RepID=A9GW54_SORC5 Length = 873 Score = 786 bits (2031), Expect = 0.0, Method: Composition-based stats. Identities = 240/771 (31%), Positives = 393/771 (50%), Gaps = 64/771 (8%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 +++ + +YL+Y+M VI+ RA+P + DGLKPV RRI+Y+M+E + + KK AR V Sbjct: 13 VSIQDELRTSYLDYAMSVIIGRAIPDVRDGLKPVHRRILYSMNEQKIGPTGAHKKCARVV 72 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 GDVLGKYHPHGD A Y+A+V M Q FS RYPL+DGQGN+G+ D S AAMRYTESRLS+ Sbjct: 73 GDVLGKYHPHGDLAVYDALVRMGQTFSLRYPLIDGQGNYGSVDG-DSPAAMRYTESRLSR 131 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 + LL++L + T D+VPN+D + EP +LPA+ P +L+NG+ GIAVGMAT+IPPHNL E Sbjct: 132 MAVELLADLDKDTVDFVPNYDDSELEPSVLPAKFPQLLVNGSGGIAVGMATNIPPHNLGE 191 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 + A IA+I P TL++LL +V GPD+PT +I ++ I + Y GRGS+ MR + Sbjct: 192 IIDATIAIIRNPDVTLEELLHLVPGPDFPTGG-LIYGKSGIVQAYTTGRGSITMRGRSQV 250 Query: 248 E------DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 E +V + +P+QV+ AR++ +IA M+ K++ + ++RDESD E +V + Sbjct: 251 EKTMKGDREQLVFTEIPYQVNKARLVAKIAECMKEKRIEGISEVRDESDREGMRIVVELK 310 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 + + V+N L+ TDL+ ++ + +N+ +GRPAV +L + LS ++ RR+ V RR Sbjct: 311 K--DIFPQVVLNQLYRLTDLQATFGV-INLSIANGRPAVLSLKDTLSHFIEHRREVVTRR 367 Query: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSR------------ 406 + L + + ++EGL +A +ID ++ IR D+ + L Sbjct: 368 CRFELRQAESQRELVEGLGMATSDIDRIVATIRASSDPDDARENLQKLPLRGLGEFLRRA 427 Query: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451 + L+E QA+AILE++L L LE K+ E EL + ++L+ IL Sbjct: 428 GRPEPECAEADTRGDYFLSERQAKAILEMRLSRLTGLEREKLAKEYGELSQTIERLRAIL 487 Query: 452 ASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVR 511 A + N++ EL+ +GD RR+ + E + D++ E + + +S G+++ Sbjct: 488 ADMGLLMNVIVMELEEIKARFGDKRRTEIVPAE--AEIQMEDLIQEEDMVVTISHAGYLK 545 Query: 512 SAKGHDIDAP--------GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA 563 A G+ + D ++ V F G+ + +P A Sbjct: 546 RTPTSTYRAQRRGGKGMVGMEAREEDWVSQLFVASTHSYVFFFSDKGKVFVKKVYEIPQA 605 Query: 564 --RGQGEPLTGKLTLPPGATVDHMLMESD---DQKLLMASDAGYGFVCTFNDLVARNRAG 618 +G + + + PG V + + ++ + G N+ G Sbjct: 606 PRNAKGRAIVNFVGMEPGEKVAAITPVPSFDGETFVVTLTRRGQIKKTALNEYENYRDKG 665 Query: 619 KALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSA 677 + + E + + D L+ T++G + FP + + G K I + Sbjct: 666 IIGVRIEEGDQLFTA-ALTDGKRELVIATRSGMSIRFPEDQVRPTGRATMGVKGIELDEG 724 Query: 678 EAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLM 728 + G G++ + + + K P E + RG +G ++ Sbjct: 725 DVVVGL-GVSG----DGRDRVLAVCERGYGKQTPLEEFR-LQSRGGKGVIL 769 Score = 83.0 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 87/218 (39%), Gaps = 24/218 (11%) Query: 480 LQEREEAKAMSEHDMLPS---EPVTIVLSQMGWVRSAKGHDIDAP------GLNYKAGDS 530 E + ++ +PS E + L++ G ++ ++ + G+ + GD Sbjct: 617 FVGMEPGEKVAAITPVPSFDGETFVVTLTRRGQIKKTALNEYENYRDKGIIGVRIEEGDQ 676 Query: 531 FKAAVKGKSNQPVVFVDSTGRSYAIDPITL-PSARG----QGEPLTGKLTLPPGATVDHM 585 A + +V +G S + P+ R +G + L G V + Sbjct: 677 LFTAALTDGKRELVIATRSGMSIRFPEDQVRPTGRATMGVKG------IELDEGDVVVGL 730 Query: 586 LMESDDQKLLMAS-DAGYGFVCTFNDLVARNRAGKALITLPENAH--VMPPVVIEDASDM 642 + D + ++A + GYG + ++R GK +I + + + V + SD Sbjct: 731 GVSGDGRDRVLAVCERGYGKQTPLEEFRLQSRGGKGVILIDASERNGPVVGVAMVSPSDE 790 Query: 643 LLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEA 679 +L +T G+M+ S++ + + +G +I+++ E Sbjct: 791 VLIVTDRGQMIRTKTSEIRETGRNAQGVRIMHVGQDER 828 >UniRef50_C8PS29 DNA gyrase, A subunit n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PS29_9SPIO Length = 838 Score = 782 bits (2020), Expect = 0.0, Method: Composition-based stats. Identities = 238/764 (31%), Positives = 398/764 (52%), Gaps = 43/764 (5%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 +++ + AY++YSM VI+ RALP + DGLKPV RRI+Y+M E L S +K A+ V Sbjct: 15 ISIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKNLRYSGPTRKCAKIV 74 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 GDVLG YHPHGD++ Y+A+V + Q FS RYP++ QGN+G AA RYTE+++++ Sbjct: 75 GDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTI-GGDPPAAYRYTEAKMAR 133 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 +E ++ ++ + T D++PNFD + QEP +LP + P +L NG++GIAVGMAT++PPHNLRE Sbjct: 134 LAESMVEDIKKDTVDFIPNFDDSTQEPTVLPGKFPFLLANGSSGIAVGMATNMPPHNLRE 193 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 +AQA A ID P T+D+L ++GPD+PT II + IR+ ++ GRG + +R + Sbjct: 194 IAQAVSAYIDNPDITIDELAKYIKGPDFPTGG-IIFGKKGIRQAFKTGRGKILVRGRFNI 252 Query: 248 E-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 E ++ + +P+QV+ ++ +I R K + + + DE+ RLVI + Sbjct: 253 EVDKKGKETIIFTEVPYQVNTTALVSKIGELAREKVIEGIAAVNDETSDRAGLRLVIELK 312 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRL 362 + V+N LF+ T L+ S+ + +N+ + GRP L +++ ++ R++ V RR+ Sbjct: 313 RGAI-AKVVLNQLFSKTALQSSFGV-INLALVGGRPQTLTLKQLVGYFVAHRQEVVTRRV 370 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAEAILE 419 + L+K +R HIL L+VA NIDEVI+IIR + K ALM RF + QA+AI++ Sbjct: 371 RFDLKKAEERAHILRALIVAIDNIDEVIKIIRGSRDTASAKNALMERFSFDDVQAQAIVD 430 Query: 420 LKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSP 479 ++L+ L LE +R E ELE + L+ +LA K+ L+K+E A+ +GDDRR+ Sbjct: 431 MQLKRLTSLEIEDLRKELQELEVLIEHLKDLLAHPEKILALIKQETNELAEKFGDDRRTD 490 Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK--------AGDSF 531 + +E + ++ D++ E + +++S +G+++ K D Sbjct: 491 IV-SDEVEEINIEDLIKKEQMVVLVSNLGYIKRVPVTAYKRQNRGGKGSNSAALVEDDFI 549 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLMES 589 ++ ++F+ + G++Y + +P A +G + L + + ++ Sbjct: 550 DQIFTASTHDYIMFITNEGKAYWVKVHEIPEASRTSRGSHIKSLLAVSSDEEITTIVSLK 609 Query: 590 D---DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI 646 + D LLMA+ G + G I L E ++ ++ D L+ + Sbjct: 610 EFSSDTYLLMATAGGIVKKVQTDSFQNAKTRGIIAIKLDEGDKLVSAILTT-GKDELMLV 668 Query: 647 TQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH---V 702 T+ G+ L +++ + G I + G D L + L + Sbjct: 669 TRQGQALRVSEAEIRDQGRASHGVIGIRLS------GGDELTGALRINNGKLLVMSENGY 722 Query: 703 GKR------KIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEID 740 GKR R QKV + G ++ L D EI Sbjct: 723 GKRVDFSEFSPHGRGTGGQKVYTVTEKTGEVVGLLAVADDDEIV 766 Score = 83.0 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 86/217 (39%), Gaps = 14/217 (6%) Query: 497 SEPVTIVLSQMGWVRSAKGHDIDAPG------LNYKAGDSFKAAVKGKSNQPVVFVDSTG 550 S+ ++ + G V+ + + GD +A+ ++ V G Sbjct: 613 SDTYLLMATAGGIVKKVQTDSFQNAKTRGIIAIKLDEGDKLVSAILTTGKDELMLVTRQG 672 Query: 551 RSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFND 610 ++ + + +G+ + L G + L ++ + L+M S+ GYG F++ Sbjct: 673 QALRVSEAEI-RDQGRASHGVIGIRLSGGDELTGALRINNGKLLVM-SENGYGKRVDFSE 730 Query: 611 LVARNRA--GKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGK- 667 R G+ + T+ E + ++ D ++ IT G+ + VS + + + Sbjct: 731 FSPHGRGTGGQKVYTVTEKTGEVVGLLAVADDDEIVCITGQGKTIRVQVSSINVMGRAAQ 790 Query: 668 GNKIINIPSAEAARGEDGLAQLY---VLPPQSTLTIH 701 G +I++I S + G D +A+ + P S T + Sbjct: 791 GVRILDIESPDQLIGLDVVAREDEESITPAASETTFN 827 >UniRef50_C9M5P0 DNA gyrase, A subunit n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M5P0_9BACT Length = 836 Score = 781 bits (2018), Expect = 0.0, Method: Composition-based stats. Identities = 251/744 (33%), Positives = 396/744 (53%), Gaps = 34/744 (4%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 L E +++YL+Y+M VI+ RALP DGLKPVQRRI+YAM LG+ + +KKS Sbjct: 10 RVTVHPLVEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRILYAMMGLGIKHNQPYKKS 69 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VG+ +GKYHPHGDSA YE MV +AQ +S RYPLVDGQGN+G+ D S AAMRYTE+ Sbjct: 70 ARVVGETMGKYHPHGDSAIYETMVRLAQEWSMRYPLVDGQGNFGSIDG-DSAAAMRYTEA 128 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 R ++ EL+L+++ + T DW PNFD +L+EP LP+ LPN+L+NG+TGIAVGMAT++ PH Sbjct: 129 RFAETGELMLADIDEDTVDWGPNFDESLKEPLTLPSALPNLLINGSTGIAVGMATNMAPH 188 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL EV A LI +P LD L+ + GPD+PT II R I Y GRG + +R Sbjct: 189 NLGEVVDALRLLIRRPDAELDDLMSCLPGPDFPTGG-IIMGREGILDAYRTGRGKIILRG 247 Query: 244 VWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 E VVI+ +P+ ++ ++E I ++ K++ V D+RDESD + +V Sbjct: 248 KCHVEQKSRSKTNVVITEIPYMINKTTLIESIVKGVQGKQIDGVSDIRDESDRKGLRLVV 307 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + + D + V L++ T L+ ++ I +N+ +D +P NL ++L +L +RR V Sbjct: 308 EL--TREADAELVQRQLYSRTSLQSTFGI-INLALVDNKPVELNLKQLLETFLNYRRSVV 364 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEII---RNEDEPKPALMSRFGLTETQAE 415 RRR +RL+K R HI+EGL A ID+VI II + D+ K L+ T+ QA+ Sbjct: 365 RRRTQFRLDKAEARRHIVEGLCKALDVIDQVIAIIRGAQTADDAKAGLIGELAFTDLQAQ 424 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 AIL+++L+ L LE K+ E ++L + ++ + IL + ++ ++ EL + + D+ Sbjct: 425 AILDMRLQRLTGLEREKLLAELAQLLADIERYRSILDNPSVLDGVINDELGELRRKFADE 484 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN--------YKA 527 RR+ L + S D+LP E + + LS+ G++R + + + K Sbjct: 485 RRTELSAALPTEGDSLEDLLPEEDILVTLSKDGFLRRSPLENYNLQNRGGKGRLGAVLKD 544 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR-GQGEPLTGKLTLPPGATVDHM- 585 D ++ + S GR +AI +P + G+G ++ ++L V M Sbjct: 545 DDEVGQMAVTSTHSDIFLFTSRGRVFAIRGHMIPETKTGKGRAVSKFVSLTDDERVVAMR 604 Query: 586 --LMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDML 643 L E+ LL + G G +L RAG+ +++L + + ++ D + + Sbjct: 605 GTLEETATSHLLFITKRGIGKRMDAEELENLTRAGRRVLSLDDGDE-IAAIIDTDGNSKV 663 Query: 644 LAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHV 702 L +T + S+ + + +G K + + +D + + + P L + Sbjct: 664 LLVTSKAKAAHVDESEFRPMGRAARGVKAMKL------APDDRIIAAWTVAPDENLLLVS 717 Query: 703 GKRKIKLRPEELQKVTGERGRRGT 726 K E + RG G Sbjct: 718 ETGIGKRTKPEEFPIH-HRGSGGV 740 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 78/204 (38%), Gaps = 20/204 (9%) Query: 502 IVLSQMGWVRSAKGHDIDAPGLNYK------AGDSFKAAVKGKSNQPVVFVDSTGRSYAI 555 + +++ G + +++ + GD A + N V+ V S ++ + Sbjct: 616 LFITKRGIGKRMDAEELENLTRAGRRVLSLDDGDEIAAIIDTDGNSKVLLVTSKAKAAHV 675 Query: 556 DPITLPSARGQGEPLTGK--LTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVA 613 D R G G + L P + + D+ LL+ S+ G G + Sbjct: 676 DESEF---RPMGRAARGVKAMKLAPDDRIIAAWTVAPDENLLLVSETGIGKRTKPEEFPI 732 Query: 614 RNRA--GKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGK-GNK 670 +R G + L + V +SD + +T+ GRM+ SD+P LS+ G+ Sbjct: 733 HHRGSGGVQAMHLGARTGRLAAAVGVASSDEVGLMTEKGRMIRLSASDIPLLSRTATGSI 792 Query: 671 IINIPSAEAARGEDGLAQLYVLPP 694 ++ + D LA + V+P Sbjct: 793 VLRLNDG------DLLASVSVIPA 810 >UniRef50_O54478 DNA topoisomerase 4 subunit A n=18 Tax=Alphaproteobacteria RepID=PARC_CAUCR Length = 759 Score = 780 bits (2016), Expect = 0.0, Method: Composition-based stats. Identities = 285/741 (38%), Positives = 421/741 (56%), Gaps = 35/741 (4%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 L E YL Y++ I RALP + DGLKPV RR++YAMS + LN A +K A+ VG Sbjct: 22 PLTEALSRRYLAYALSTIGSRALPDVRDGLKPVHRRVLYAMSNMRLNPDAAARKCAKVVG 81 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 +V+G +HPHGD++ Y+A+V +AQ FS R PLV+GQGN+G D S AAMRYTE ++++ Sbjct: 82 EVMGNFHPHGDASIYDALVRLAQEFSQRIPLVEGQGNFGNIDG-DSAAAMRYTECKMTEA 140 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 + LLL + + D+ P +DG +EP +LP+ PN+L NG++GIAVGMAT IPPHN E+ Sbjct: 141 AMLLLDGIDEDAVDFRPTYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPHNAAEL 200 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248 A L+ P T LL+ V GPD+PT I+ SRA + + YE GRG VRMRA W+KE Sbjct: 201 IDACQLLLANPDATTADLLEKVPGPDFPTGGVIVESRASLLETYETGRGGVRMRAKWEKE 260 Query: 249 DG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 D +V++ +P+QV + ++EQ+A + +KK ++ D+RDES + RLV+ P+S Sbjct: 261 DTGRGTYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDESAED--IRLVLEPKS 318 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLN 363 V+ + +M LF + LE + +N+N++ G P V + + L +L RR+ + RR Sbjct: 319 KNVEPEVLMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALMAFLAHRREVLTRRAR 378 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLR 423 +RL K+ RLHIL+GLL+A+LN+DEVI I+R ED+PK L+ FGLT+ QA+AIL +LR Sbjct: 379 HRLAKIEARLHILDGLLIAYLNLDEVIRIVRYEDKPKEKLIETFGLTDIQADAILNTRLR 438 Query: 424 HLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNL-------LKKELQADAQAYGDDR 476 LAKLEEM+IR E +EL +ERD + +LASE K L ++ L R Sbjct: 439 QLAKLEEMEIRREHAELVEERDGILAMLASEAKQWKLVGVGLSEVRAALLKIKHPLDKPR 498 Query: 477 ------RSPLQEREEAK-AMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529 RS E + + M+ EP+TI+LS+ GW+R+AKG D L +K GD Sbjct: 499 PTGVTGRSVFGEAPQVDADAAIEAMIVREPITIILSERGWIRAAKGKIDDPSELKFKEGD 558 Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589 V ++ ++ S GR + + LPSARG GEP+ + L + + Sbjct: 559 KLGFLVPAETTDKLLIFSSDGRFFTLGCDKLPSARGHGEPVRMMIELDDKVKIIDVFPFK 618 Query: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649 +K ++AS GYGF+ + +A +AGK ++ + +E D L I Sbjct: 619 AGRKRILASKGGYGFLMPEEEALANRKAGKQVLNVGNEG---AAFCLEAVGDQLAVIGDN 675 Query: 650 GRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQST-LTIHVGKRKIK 708 G++L+FP+ +LP++ +GKG K+ GL ++ I R + Sbjct: 676 GKILIFPLEELPEMPRGKGVKLQAYREG-------GLRDGLSFNAETGAYWIDTAGR--R 726 Query: 709 LRPEELQKVTGERGRRGTLMR 729 E ++ G R G L+ Sbjct: 727 RDWAEWKEWVGRRAGAGKLVP 747 >UniRef50_D1R591 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R591_9CHLA Length = 865 Score = 780 bits (2015), Expect = 0.0, Method: Composition-based stats. Identities = 234/744 (31%), Positives = 391/744 (52%), Gaps = 40/744 (5%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 + + +++YL YSM VI+ RALP DGLKP QRRI+YAM +L L+ K +K A+ G Sbjct: 13 NVEDEMKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGGKHRKCAKISG 72 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 D G YHPHG+ Y +V MAQ + RYPLVDGQGN+G+ D + AAMRYTE+RL+ Sbjct: 73 DTSGDYHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQP-AAMRYTEARLTHA 131 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 S L+ +L + T + VPN+D T +EP + PA+ PN+L NG++GIAVGMAT+IPPHNL E+ Sbjct: 132 SVQLMEDLDKNTVEMVPNYDETKKEPTVFPAKFPNLLCNGSSGIAVGMATNIPPHNLNEL 191 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248 QA + ++ P ++D+++ ++ PD+PT II I++ + GRG + +RAV + E Sbjct: 192 IQATLLVLQNPAVSIDEIMGVMPAPDFPTGG-IICGYRGIKEAFHTGRGRLLLRAVIRVE 250 Query: 249 DGA-------VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 + +++ +P+ V+ +R++EQIA + +K + + DLRDESD + L+ + Sbjct: 251 ENEENPDKQRLIVDEIPYNVNKSRLIEQIADLINSKTITGIADLRDESDKDGMRILIELK 310 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 R V + ++N LF +DL+ ++ N+ + G P V N+ ++++ W+ R + VRRR Sbjct: 311 RGEIV--EVILNQLFKYSDLQITFGCNMLALD-KGLPKVMNVKQLIAAWVDHRIEVVRRR 367 Query: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEII---RNEDEPKPALMSRFGLTETQAEAIL 418 + L K R HILEG L A ++DEV+ +I N +E + L+ RF LTE QA A+L Sbjct: 368 TRFELNKAEARAHILEGYLKAIQHMDEVVRVIRASNNREEARDELIQRFDLTERQANAVL 427 Query: 419 ELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRS 478 +LKL L LE KI E EL ++ D L+ +LASE + +++++EL + + R++ Sbjct: 428 DLKLYQLTGLEYEKINEEYRELLQKIDYLRAVLASEAMVRDIIREELLEIQKNHRSGRKT 487 Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNY---------KAGD 529 + E ++ D++ +E V I +S+ +++ + D Sbjct: 488 QIIAAES--EVNMEDLIANESVIITISEDDYIKRMPVDTFREQRRGGQGIAGMHLKREED 545 Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS--ARGQGEPLTGKL-TLPPGATVDHML 586 + K ++ ++ + GR Y + +P + +G+PL L + P + +L Sbjct: 546 AIKGLYVASTHDYLLIFTNLGRCYWLKVWQIPETGRKSKGKPLINLLEDIRPDEKIATVL 605 Query: 587 MESDDQ---KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDML 643 S+ + +LMA+ G ++ R G + + E V+ ++ D+ + Sbjct: 606 RVSNFEQQAYILMATKKGIVKKTELSEFSHPRRKGIWALDIVEGDEVVTARLVSDSQQ-I 664 Query: 644 LAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHV 702 + T G + F + + + +G K + + D + + T+ I Sbjct: 665 MLFTYHGMAVRFDQGKVRPMGRTARGVKGVTLKD-----DTDYVVGCEAVNGTETILIVC 719 Query: 703 GKRKIKLRPEELQKVTGERGRRGT 726 K E + RG G Sbjct: 720 ENGFGKRSNVEDFR-QTNRGGVGV 742 Score = 74.9 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 72/465 (15%), Positives = 149/465 (32%), Gaps = 63/465 (13%) Query: 286 RDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLE---KSYRINLNMIGLDGRPAVKN 342 R+E+ E R + R +D L+ T LE + + +D AV Sbjct: 405 REEARDELIQRFDLTERQANAVLDL---KLYQLTGLEYEKINEEYRELLQKIDYLRAVLA 461 Query: 343 ----LLEILSEWL-----VFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEII 393 + +I+ E L R R+ + + + + VI I Sbjct: 462 SEAMVRDIIREELLEIQKNHRSG---RKTQIIAAESEVNME-------DLIANESVIITI 511 Query: 394 RNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILAS 453 +D K + F + I + L+ EE I+G I + Sbjct: 512 SEDDYIKRMPVDTFREQRRGGQGIAGMHLKR----EEDAIKGLY---VASTHDYLLIFTN 564 Query: 454 ERKMNNLLKKELQADAQAYGDDRRSP----------LQEREEAKAMSEHDMLPSEPVTIV 503 + L ++ R+S ++ E+ + + ++ Sbjct: 565 LGRCYWLKVWQIPE------TGRKSKGKPLINLLEDIRPDEKIATVLRVSNFEQQAYILM 618 Query: 504 LSQMGWVRSAKGHDIDAPG------LNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDP 557 ++ G V+ + + P L+ GD A +Q ++ G + D Sbjct: 619 ATKKGIVKKTELSEFSHPRRKGIWALDIVEGDEVVTARLVSDSQQIMLFTYHGMAVRFDQ 678 Query: 558 ITL-PSAR-GQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARN 615 + P R +G V + + +L+ + G+G D N Sbjct: 679 GKVRPMGRTARGVKGVTL--KDDTDYVVGCEAVNGTETILIVCENGFGKRSNVEDFRQTN 736 Query: 616 RAG---KALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKI 671 R G +++IT N +V+ + + D D ++ ++ G+ + + DL + + +G K+ Sbjct: 737 RGGVGVRSIITSERNGNVVGALCVTD-EDGMVMMSAQGQTVRITMKDLRVMGRNTQGVKL 795 Query: 672 INIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQK 716 N+ + L + T +K +L++ Sbjct: 796 ANLKEGDYLVAIQKLEVSDDVDNAKVDTQPSAPPLVKEEGSDLEE 840 >UniRef50_B0MRF5 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MRF5_9FIRM Length = 878 Score = 780 bits (2015), Expect = 0.0, Method: Composition-based stats. Identities = 231/792 (29%), Positives = 405/792 (51%), Gaps = 63/792 (7%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 ++ + + ++L YSM V++ RALP + DG+KPV RRI+Y M+E +S ++K A T Sbjct: 17 QVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSSKPYRKCAYT 76 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VG+VLGKYHPHGD++ Y+A+V +AQ FS RYPL+DG GN+G+ D AA RYTE+R++ Sbjct: 77 VGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDGDPP-AAYRYTEARMA 135 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 K + LL ++ + T DW N+D L EP +LP + PN+L+NG+ GIAVGMAT+IPPHNL Sbjct: 136 KIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMATNIPPHNLN 195 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 EV A +A +D P+ +++++L ++GPD+PT II + IR Y GRG + +R + Sbjct: 196 EVCDAIVARMDNPECSIEEILQYIKGPDFPTGG-IIMGYSGIRSAYYTGRGKITLRGKAE 254 Query: 247 KEDG----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 + ++++ +P+ V+ +++LE MR+K++ + +LRDESD + R+V + Sbjct: 255 IVEEGNHSRIIVTEIPYMVNKSKLLETTGQLMRDKRIEGISNLRDESDKDG-MRIVYELK 313 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRL 362 + V+ V+N L++ T L+ + + + + ++G P LLEIL ++ F++ + RR Sbjct: 314 RD-VNAQVVLNKLYSFTQLQDTVGVIM-IALVNGEPKQLTLLEILDNYIAFQKQIITRRT 371 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRF------------ 407 + L+K +R HIL+G L+A NIDEVI I+R+ E K LM RF Sbjct: 372 AFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMERFKEDDLAKLLQRA 431 Query: 408 --------------GLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILAS 453 GL+E QA+AI++++L L LE K+ E +E+ ++ + IL+S Sbjct: 432 MGENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIMEKINDFLDILSS 491 Query: 454 ERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS- 512 + ++ ++K+E+ A + YGD+RR+ ++ + + D++P E + + +G+++ Sbjct: 492 DERVKEIIKEEITAIKEKYGDERRTAIEPV--SGEVDIEDLIPEEECVLTYTNIGYIKRQ 549 Query: 513 -------AKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA-- 563 K G+ + D + ++ ++F+ + G Y + +P Sbjct: 550 PVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYKLKCYEVPEGSK 609 Query: 564 RGQGEPLTGKLTLPPGATVDHMLMESD---DQKLLMASDAGYGFVCTFNDLVARNRAGKA 620 + +G + L L G + M+ SD ++ + + G D + G Sbjct: 610 QSRGTNIVNLLQLDEGERIAAMMKTSDFAENKYFICVTKYGKIKRTPLYDFRNVRKNGLR 669 Query: 621 LITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEA 679 ITL E + + + ++ T G + F + + + G + I + + Sbjct: 670 AITLAEGDE-IAAAHLTEGDSSIIVATHLGMAIHFSEDKIRSMGRLAAGVRAIKLREDDY 728 Query: 680 ARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEI 739 G V + K +L ++ + R G ++ + D Sbjct: 729 IVG-----AAKVYSDDMRILTVTDKGYGRLSALSDYRM---QNRGGNGLKNYKIRDDRGY 780 Query: 740 DSPRRASSGDSE 751 R+ D + Sbjct: 781 VCGIRSIQADDD 792 Score = 76.1 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 38/216 (17%), Positives = 79/216 (36%), Gaps = 15/216 (6%) Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDA------PGLNYKAGDSFK 532 L E E AM + I +++ G ++ +D + GD Sbjct: 621 QLDEGERIAAMMKTSDFAENKYFICVTKYGKIKRTPLYDFRNVRKNGLRAITLAEGDEIA 680 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVD-HMLMES 589 AA + + ++ G + + R G G + L + + S Sbjct: 681 AAHLTEGDSSIIVATHLGMAIHFSEDKI---RSMGRLAAGVRAIKLREDDYIVGAAKVYS 737 Query: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALIT--LPENAHVMPPVVIEDASDMLLAIT 647 DD ++L +D GYG + +D +NR G L + ++ + + A D ++ I+ Sbjct: 738 DDMRILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKIRDDRGYVCGIRSIQADDDVILIS 797 Query: 648 QAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARG 682 G ++ +DL + + G G +++ + + Sbjct: 798 TDGVIIRIRANDLRVMRRTGLGVRVMKLSDEDRVVT 833 >UniRef50_A6DH72 DNA gyrase subunit A n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DH72_9BACT Length = 859 Score = 779 bits (2011), Expect = 0.0, Method: Composition-based stats. Identities = 239/754 (31%), Positives = 392/754 (51%), Gaps = 42/754 (5%) Query: 1 MSDMAERLA------LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGL 54 MSD + + + + +AYL YSM V + RA+P + DGLKP RR+++AM +L L Sbjct: 1 MSDNQQDFSTVTPQGIEKLLSDAYLQYSMSVNVGRAIPDVRDGLKPGMRRVLFAMDKLNL 60 Query: 55 NASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKS 114 + + K AR VGDV+GKYHPHGD + Y+ MV MAQ FS R L+DGQGN+G+ D S Sbjct: 61 RKGSSYMKCARVVGDVIGKYHPHGDGSVYDTMVRMAQDFSMRGMLIDGQGNFGSIDG-DS 119 Query: 115 FAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAV 174 AA RYTE R+ + +E LL++L + T D P FDG+ EP +LPAR PN+L+NGTTGI V Sbjct: 120 AAAYRYTECRMERLAEELLTDLDKNTVDMQPTFDGSQNEPTVLPARYPNLLVNGTTGIGV 179 Query: 175 GMATDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYEN 234 GMAT IPPHNL EV A +AL+DQP T+++++ + GPD+PT I IR++YE Sbjct: 180 GMATSIPPHNLGEVINATVALLDQPSITIEEMMQHLPGPDFPTAG-ISIGFDGIRRLYET 238 Query: 235 GRGSVRMRAVWKKEDG----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESD 290 GRG V +R + + +VI+ +P+ V+ ++++IA + NK + + L DES Sbjct: 239 GRGGVHLRGRAEIIEKNGREQIVITEIPYAVNKENMVKKIAELVNNKVITGISSLNDESS 298 Query: 291 HENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEW 350 R+V+ ++N + V+N L+ T L S ++ + +P NL ++L + Sbjct: 299 SRVGIRVVVGIKTNAM-ATVVINQLYKHTQLAVSIGCQFLVVD-NKQPKTLNLKQLLQAY 356 Query: 351 LVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRF 407 L R + + RR+ + LEK +R HILEGLL A +IDEVI+IIR N ++ L RF Sbjct: 357 LDHRLEVITRRIKFELEKAERRAHILEGLLKAVDHIDEVIKIIRASTNREDAHNQLKERF 416 Query: 408 GLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQA 467 L+ QA+AIL+++L L L ++ E EL K + +LA+ + +++K+EL Sbjct: 417 ELSNEQAKAILDMRLSQLTGLAIDELTAEYEELMKRIAHYRELLANRQMRLDVVKEELIE 476 Query: 468 DAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP------ 521 + D+RR+ ++ E + ++ D++ TI +S G+++ Sbjct: 477 VRDKFADERRTEMRPGE--RDINYEDLIARASATITISNEGYIKRVPTEIYRTQNRGGKG 534 Query: 522 --GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLP 577 G+ K D K ++ ++F + GR + + +P A +G+ + L Sbjct: 535 VKGMETKDDDFVKQLTTACTHDYIMFFTNFGRMHWLKVYDIPEATRVSKGKAMVNLLEFE 594 Query: 578 PGATVDHML----MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPP 633 G V M+ ++ +D+ ++M++ G + I L E+ ++ Sbjct: 595 KGEYVRAMISVDKVDDEDRFIMMSTRNGVVKKTALAAFKNMRKKPIKAIVLDEDDDLIEA 654 Query: 634 VVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVL 692 + D + ++ T+ G F SD + +G + I + D + + ++ Sbjct: 655 -KLTDGNKKIILSTREGIACHFKESDCRTQGRVTRGCRGIRLSE------SDQVVAMSIV 707 Query: 693 PPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGT 726 + + K K + ++T +RG +G Sbjct: 708 EESEDILVVTAKGMGKRSCVDDYRLT-KRGAKGV 740 Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 44/212 (20%), Positives = 73/212 (34%), Gaps = 18/212 (8%) Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLS-QMGWVRSAKGHDIDAPGLN------YKAGDSF 531 ++ E +AM D + E I++S + G V+ D Sbjct: 592 EFEKGEYVRAMISVDKVDDEDRFIMMSTRNGVVKKTALAAFKNMRKKPIKAIVLDEDDDL 651 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA-RGQGEPLTGK--LTLPPGATVDHMLME 588 A N+ ++ G I S R QG G + L V M + Sbjct: 652 IEAKLTDGNKKIILSTREG----IACHFKESDCRTQGRVTRGCRGIRLSESDQVVAMSIV 707 Query: 589 SDDQKLLMASDAGYGFVCTFND--LVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI 646 + + +L+ + G G +D L R G I L E +V+ ++IED D ++ Sbjct: 708 EESEDILVVTAKGMGKRSCVDDYRLTKRGAKGVRNIKLKEGDYVVEVMMIEDT-DEIIMT 766 Query: 647 TQAGRMLMFPVSDLPQLSKGK-GNKIINIPSA 677 T G M+ + L + G I+ A Sbjct: 767 TMEGLMVRISAEPIRSLGRASQGVTIMKFKKA 798 >UniRef50_D1Y742 DNA gyrase, A subunit n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y742_9BACT Length = 871 Score = 777 bits (2008), Expect = 0.0, Method: Composition-based stats. Identities = 260/762 (34%), Positives = 411/762 (53%), Gaps = 34/762 (4%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 L + +YL+Y+M VI+ RALP DGLKPVQRR++Y M LG+ + +KKSAR VG Sbjct: 13 PLVPEIKRSYLDYAMSVIVGRALPDARDGLKPVQRRVLYGMLGLGIRHNQAYKKSARVVG 72 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 +V+GKYHPHGD++ Y+ MV +AQP++ RYPLVDGQGN+G+ D AAMRYTE+R ++ Sbjct: 73 EVMGKYHPHGDASIYDTMVRLAQPWNLRYPLVDGQGNFGSVDGDG-AAAMRYTEARFAEL 131 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 EL+L ++ + T DW PNFD +L+EP LP+ +PN+L+NG+TGIAVGMAT++PPHNL EV Sbjct: 132 GELMLQDIDEDTVDWGPNFDESLKEPLTLPSLVPNLLVNGSTGIAVGMATNMPPHNLGEV 191 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248 A LID P+ L +L++ + GPD+PT II R I Y GRG + +R E Sbjct: 192 IDALCCLIDHPEAELGELMNYLPGPDFPTGG-IIMGREGIVDAYRTGRGKIIVRGRCVVE 250 Query: 249 DG----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 +G +VVI+ +P+ V+ ++E IA ++ + V DLRDESD + R+V+ + Sbjct: 251 EGKRRTSVVITEIPYMVNKTTLIEGIAKCVQEHTIDGVSDLRDESDRQG-LRIVLDLNRD 309 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 364 D + V L+ T ++ ++ + +N+ +D RP L +L +L +RRD VRRR + Sbjct: 310 G-DPELVQRQLYNRTLMQSTFGV-INLTLVDQRPVELGLKSMLEVFLDYRRDVVRRRTAF 367 Query: 365 RLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEAILELK 421 RL K +R HI+EGL A IDEVI IIR + A L + +E QA+AIL+++ Sbjct: 368 RLAKAQEREHIIEGLCRALDMIDEVIRIIRGAQTAEEASHGLTEQLQFSEKQAQAILDMR 427 Query: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQ 481 L+ L LE K+ E ++L + + Q ILA + ++ +++ EL +GD RR+ +Q Sbjct: 428 LQRLTGLERDKLTAEMAQLLADIARYQEILADAKTLDGVIRDELAELRHKFGDKRRTEIQ 487 Query: 482 EREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK--------AGDSFKA 533 E+ + S D++P E + I LS+ G++R + D + K D Sbjct: 488 LHVESTSDSYEDLMPEENIVITLSKDGYLRRSLLKDYNVQNRGGKGRRGANLHEEDQVAG 547 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSAR-GQGEPLTGKLTLPPGATVDHMLMESDDQ 592 V ++ V+ S GR +AI +P + G+G + ++L G TV +L D Sbjct: 548 MVVTTTHNDVLLFTSRGRVFAIKGHMVPETKSGKGRKVEQFISLSEGETVVEILGRFPDN 607 Query: 593 --KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAG 650 +++ + G ++L RAG+ ++TL + + + + D L ++ G Sbjct: 608 CSTVVLITRRGIAKRMDKSELQNLTRAGRQIMTLDDGDD-IARIRCTNGLDDLFLVSAMG 666 Query: 651 RMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKL 709 R L ++ + + +G K + + +D + V+ S + + + K+ Sbjct: 667 RGLRISEDEIRTMGRSARGVKAMKLGK------DDEIISCEVIAGDSRILLVSQRGIGKI 720 Query: 710 RPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 + V R G R ++ DR + D E Sbjct: 721 TSYDEFSVH-HRATGGQ--RAMRIGDRTGRLAVANTVFPDDE 759 Score = 82.2 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 28/206 (13%), Positives = 72/206 (34%), Gaps = 14/206 (6%) Query: 501 TIVLSQMGWVRSAKGHDIDAPGLNYK------AGDSFKAAVKGKSNQPVVFVDSTGRSYA 554 +++++ G + ++ + GD + V + GR Sbjct: 611 VVLITRRGIAKRMDKSELQNLTRAGRQIMTLDDGDDIARIRCTNGLDDLFLVSAMGRGLR 670 Query: 555 IDPITLPSARGQGEPLTGK--LTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLV 612 I + R G G + L + + + D ++L+ S G G + ++++ Sbjct: 671 ISEDEI---RTMGRSARGVKAMKLGKDDEIISCEVIAGDSRILLVSQRGIGKITSYDEFS 727 Query: 613 ARNRA--GKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGN 669 +RA G+ + + + + D + +T G ++ V +PQL + G+ Sbjct: 728 VHHRATGGQRAMRIGDRTGRLAVANTVFPDDEVALMTAGGNIIRLAVDSIPQLGRDAAGS 787 Query: 670 KIINIPSAEAARGEDGLAQLYVLPPQ 695 +I + + + + ++ Sbjct: 788 ILIRPENGDEVANVSLIHKEDLVQSG 813 >UniRef50_B9ZEE7 DNA gyrase, A subunit n=1 Tax=Natrialba magadii ATCC 43099 RepID=B9ZEE7_NATMA Length = 861 Score = 777 bits (2007), Expect = 0.0, Method: Composition-based stats. Identities = 253/769 (32%), Positives = 412/769 (53%), Gaps = 38/769 (4%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 E + + + E +Y++Y+M VI RALP + DGLKPV RRI+YAM E+G+ + + +KS+ Sbjct: 31 VENVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVTSRSSHRKSS 90 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 VG+ +G YHPHGDSA Y+ +V MAQ FS RYPLVDGQGN+G+ D AA RYTE+R Sbjct: 91 SIVGETMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGSMDGDP-AAAPRYTEAR 149 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 ++ SE LL ++ + T D+ N+D LQEP +LP+ PN+L+NG++GIAVGM+T+IPPHN Sbjct: 150 MAAVSEELLEDIDKDTVDFSSNYDDRLQEPDVLPSAFPNLLVNGSSGIAVGMSTNIPPHN 209 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 L EV A I LID P T++ L++ V+GPD+PT A I+ R I Y+ GRG +R+RA Sbjct: 210 LGEVIDATIELIDDPDATVEDLMEHVKGPDFPTGANIV-GRDAIYSAYKTGRGRIRVRAE 268 Query: 245 WKKEDGA-----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 ++ E+ +VI+ LP+Q + AR++E+IA + + + DLRDESD + +V Sbjct: 269 FEVEEWKNGRERIVITELPYQENKARLVERIAEDVNEGDIEGISDLRDESDRDGVRIVVE 328 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 R +++ V N L LEK++ + +N+ +DG+P V +L E L E++ RR+ VR Sbjct: 329 CKRG--ANVEVVKNKLLEN-HLEKTFGV-INLALVDGQPQVLSLKETLEEYIAHRREVVR 384 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQAEA 416 RR Y L + R HILEG L A N ++V+++IRN D+ K AL + + QA Sbjct: 385 RRSEYDLAEAEDRAHILEGRLKAVENAEDVVDLIRNSETRDDAKAALQEAYDFSAEQATH 444 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDR 476 I+ ++L L +E +I E +++ E ++L IL SE+++ ++K EL Y DDR Sbjct: 445 IVRMQLGSLTSMEAAEIEDEYEDVQAEIERLTSILESEQELLAVIKDELSEIKDEYDDDR 504 Query: 477 RSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GLNYKAG 528 R+ + E+ ++ D++P E V +V+++ +V+ D G + K Sbjct: 505 RTSII--EDQGTVTHEDLIPEEEVFVVMTEDDYVKRMPISQFDPQGRGGKGIIGADVKED 562 Query: 529 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS--ARGQGEPLTGKLTLPPGATVDHML 586 D + ++ ++ + G+ Y + +P +G+ L L PG + ++ Sbjct: 563 DRVATVFRANTHDYLLCFTNQGKVYQLKTYEIPEMGRTARGKSAVNILDLDPGEDITAIV 622 Query: 587 MES---DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDML 643 DD+ + MA+ GY ++ G L E ++ + D + L Sbjct: 623 DTDAFGDDEFVTMATRHGYVKRTAGSEFDNIRSTGIIAADLQEGDELVDVE-VTDGTKDL 681 Query: 644 LAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHV 702 + ++ G + F ++ + + +G I++ +A G L Q LT+ Sbjct: 682 VIASENGMTIRFDEDEVRAMGRNARGVNGIDLQGDDAVAG---LVATDEGDEQDLLTVTQ 738 Query: 703 GKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K P + + R G + ++ +R + +A S D + Sbjct: 739 NG-YGKRTPLSEYRT---QSRYGKGLIDIKTGERNGPVTTAKAVSADDQ 783 Score = 85.7 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 81/224 (36%), Gaps = 16/224 (7%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGL------NYKAGDSFKA 533 L E+ A+ + D + + ++ G+V+ G + D + + GD Sbjct: 612 LDPGEDITAIVDTDAFGDDEFVTMATRHGYVKRTAGSEFDNIRSTGIIAADLQEGDELVD 671 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPL--TGKLTLPPGATVDHMLMES-- 589 + +V G + D + R G + L V ++ Sbjct: 672 VEVTDGTKDLVIASENGMTIRFDEDEV---RAMGRNARGVNGIDLQGDDAVAGLVATDEG 728 Query: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAH--VMPPVVIEDASDMLLAIT 647 D+Q LL + GYG ++ ++R GK LI + + A D L+ ++ Sbjct: 729 DEQDLLTVTQNGYGKRTPLSEYRTQSRYGKGLIDIKTGERNGPVTTAKAVSADDQLVMMS 788 Query: 648 QAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLY 690 + G+++ V ++ + + G ++++ +A D + Sbjct: 789 ERGQIVRTRVDEISTVGRNTMGVIVMDVDDGDAVASVDVVPAAV 832 Score = 52.2 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 63/188 (33%), Gaps = 24/188 (12%) Query: 471 AYGDDRRSPLQERE--EAKAMSEHDMLPSEPVTIVLSQMGW--------VRSAKGHDIDA 520 + + R + + + E + + ++ ++ S+ G VR+ + Sbjct: 649 EFDNIRSTGIIAADLQEGDELVDVEVTDGTKDLVIASENGMTIRFDEDEVRAMGRNARGV 708 Query: 521 PGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYA----IDPITLPSARGQGEPLTGKLTL 576 G++ + D+ V + T Y + S G+G + + Sbjct: 709 NGIDLQGDDAVAGLVATDEGDEQDLLTVTQNGYGKRTPLSEYRTQSRYGKG-----LIDI 763 Query: 577 PPGAT---VDHMLMESDDQKLLMASDAGYGFVCTFNDL--VARNRAGKALITLPENAHVM 631 G V S D +L+M S+ G +++ V RN G ++ + + V Sbjct: 764 KTGERNGPVTTAKAVSADDQLVMMSERGQIVRTRVDEISTVGRNTMGVIVMDVDDGDAVA 823 Query: 632 PPVVIEDA 639 V+ A Sbjct: 824 SVDVVPAA 831 >UniRef50_C0R046 DNA gyrase subunit A n=2 Tax=Brachyspira RepID=C0R046_BRAHW Length = 834 Score = 777 bits (2006), Expect = 0.0, Method: Composition-based stats. Identities = 247/771 (32%), Positives = 401/771 (52%), Gaps = 37/771 (4%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + +++ +YL Y+M VI+ RALP + DGLKPV RRI+YAM + L +KKS Sbjct: 26 RVDHISIENELRESYLTYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKKS 85 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 A TVG+VL +YHPHGD+A Y MV MAQ FS RY LVDGQGN+G+ DD AAMRYTE+ Sbjct: 86 AATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSIDDDPP-AAMRYTEA 144 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 R+++++E +L+++ + T +VPNFD + EP +LPA +P +L+NG+ GIA+GMAT++PPH Sbjct: 145 RMTRFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPPH 204 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL+EV A + ID + L+ VQGPD+PT II + I++ Y G+G +++RA Sbjct: 205 NLKEVVNAIVYYIDHQDAEIKDLMRYVQGPDFPTAG-IIYGKEGIKEAYTTGKGRIKLRA 263 Query: 244 VWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + E+ A+V+ LP+ V + E+IA ++ K+ V D+RDES + RL+ Sbjct: 264 RLEVEETKRDREAIVVKELPYGVVKTTLHEKIADLVKQGKIEGVADIRDESSNRAGIRLI 323 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 I + V V+N L+ TDLE ++ I +N+ ++G P V NL E++ ++ R + + Sbjct: 324 IELKK-GVATQIVLNQLWKHTDLETTFGI-INLALVNGEPKVLNLKELIKYFVDHRVEVI 381 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAE 415 +R Y L + + HILEGLL+A NI+EVI IIR N D + LM+RF L+E QA+ Sbjct: 382 TKRTEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRESENTDAARTTLMNRFKLSEKQAQ 441 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 AIL++ L+ L LE++KI E +L + + +LA K+ ++K EL+ ++ YGDD Sbjct: 442 AILDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLAHPEKILAVIKDELKKISEKYGDD 501 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDA--------PGLNYKA 527 RRS + + + E D++ E V + ++ G+++ G + Sbjct: 502 RRSEIIGKTNDTEIDEEDLIHDEDVAVSITTQGFIKRVPASSYRTQGRGGVGVQGGKSQG 561 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHM 585 + + + G+++ + +P S QG+ + L L P + Sbjct: 562 EHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALSKISQGKSIKFILNLAPEEKITSY 621 Query: 586 LM---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM 642 Q ++M + G L + G +TL N ++ ++ D Sbjct: 622 FTVSEFDPKQSIIMVTKMGTIKKMELKHLENAKKRGILALTLENNDELVAVSPVQTGDDF 681 Query: 643 LLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 ++ T AG L + ++ + G K I++ +D + +L + Sbjct: 682 IM-TTAAGLALRITEEKIRKMGRAAAGVKGISLD------DDDICVSGNAIHKGESLIVI 734 Query: 702 VGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSEE 752 K + V G RG +G + ++ ++ + GD +E Sbjct: 735 TENGIGKRLSSKQFNVKG-RGGKGQIY--IKPDNKTGNVVSVKTV-GDKDE 781 Score = 72.6 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 78/226 (34%), Gaps = 21/226 (9%) Query: 482 EREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG------LNYKAGDSFKAAV 535 E + + + P + + I++++MG ++ + ++ L + D A Sbjct: 615 EEKITSYFTVSEFDPKQSI-IMVTKMGTIKKMELKHLENAKKRGILALTLENNDELVAVS 673 Query: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLMESDDQK 593 ++ + + G + I + R G G ++L + Sbjct: 674 PVQTGDDFIMTTAAGLALRITEEKI---RKMGRAAAGVKGISLDDDDICVSGNAIHKGES 730 Query: 594 LLMASDAGYGFVCTFNDLVARNRAGK--ALITLPENAHVMPPVVIEDASDMLLAITQAGR 651 L++ ++ G G + + R GK I + V D ++ +T Sbjct: 731 LIVITENGIGKRLSSKQFNVKGRGGKGQIYIKPDNKTGNVVSVKTVGDKDEIMVVTTDDM 790 Query: 652 MLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQS 696 + +P+L + KG KI+NI ++ L V+P + Sbjct: 791 TIKIKADSIPELGRNAKGVKIVNISDGAR------VSDLAVVPADN 830 >UniRef50_Q9RT53 DNA gyrase, subunit A n=2 Tax=Bacteria RepID=Q9RT53_DEIRA Length = 812 Score = 776 bits (2004), Expect = 0.0, Method: Composition-based stats. Identities = 259/775 (33%), Positives = 414/775 (53%), Gaps = 43/775 (5%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + + + + ++NY+M VI+DRALP + DG+KPVQRRI+YAM + GL ++ K KS Sbjct: 3 GIQPVDITSEVKTNFINYAMNVIVDRALPDVRDGMKPVQRRIMYAMLQEGLASNVKHAKS 62 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 A VG+V+ +YHPHGDS+ Y+AMV + Q ++ RY LVD QGN+G+ D AAMRYTE+ Sbjct: 63 ASVVGEVMKRYHPHGDSSIYDAMVRLGQWWNMRYTLVDPQGNFGSMDGDM-AAAMRYTEA 121 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 R++K +E +L++L + T D PN+D T EP +LP+ +PN+L+NG +GIAVGMAT+IPPH Sbjct: 122 RMTKVAEEILADLEKETVDLKPNYDETTTEPTVLPSAVPNLLINGASGIAVGMATNIPPH 181 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL E++ +ALID P TLD+++ VQGPD+PT I ++ IR+ Y G +++R Sbjct: 182 NLTEISNGLLALIDNPAITLDEMMTHVQGPDFPTGGRI--AKVGIREAYATGHAGLKVRG 239 Query: 244 VWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + E+G ++IS +P+Q++ +L+ I+A + K+P + LRDESD + P R+V Sbjct: 240 KARIEEGKNGRTQIIISEIPYQLNKTNLLQTISAMYKAGKIPDIGALRDESDRKEPVRIV 299 Query: 299 IVPRSNRVDM-DQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 I + + M V+N L+ T L+ SY + +N+ ++G P V L++ + +L RRD Sbjct: 300 IELKRSAAGMGTLVLNQLYKYTQLQSSYTV-MNLSIVNGEPRVLPLIDTMRYFLDHRRDV 358 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQA 414 V RR Y L K +R H+LEGLL A +IDEVI +IR + E + LM+RFGL+E QA Sbjct: 359 VTRRTVYDLRKAKERAHVLEGLLKALDHIDEVISLIRASNTGAEARDGLMARFGLSEIQA 418 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 +AIL+++L+ L LE K++GE EL+K +L+ IL E+ + +KKE++ YGD Sbjct: 419 QAILDMRLQRLVGLEREKLQGEYDELQKTITRLESILGDEKLLWREIKKEIRDIRDRYGD 478 Query: 475 DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GLNYK 526 RRS + E EE +++ D++ E + I +++ G+V+ G + Sbjct: 479 ARRSVITELEE--DINKEDLIAVEDMVITMTRAGYVKRTNLTAYREQKRGGRGSSGGKLR 536 Query: 527 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLT-LPPGATVD 583 D+ G ++ ++F GR + LP A +G + L L + Sbjct: 537 EEDANTGVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAGRDAKGTHIRNLLPGLRDDENIA 596 Query: 584 HMLM---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDAS 640 +L + A+ +G D AG I L ++ + +D Sbjct: 597 SVLSVSGFDQPGSFIFATKSGVIKKSLITDYANITSAGLIAINLQPGDELIGVDIQQDGD 656 Query: 641 DMLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVLPPQS--- 696 D++LA T+ G+ + F + + + +G I + D + + ++P Sbjct: 657 DVVLA-TKNGQAMRFEATLVRDTGRATQGVIGIRLREG------DEVVSMALVPGNDEEG 709 Query: 697 TLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 L K +GR G + L D+ +G+ E Sbjct: 710 ELLAISECGLGKRTKVSDYP---SKGRGGLGVITLDVTDKTGKLVTLAHVAGNEE 761 Score = 67.2 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 73/195 (37%), Gaps = 17/195 (8%) Query: 502 IVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAI 555 I ++ G ++ + D +N + GD + VV G++ Sbjct: 611 IFATKSGVIKKSLITDYANITSAGLIAINLQPGDELIGVDIQQDGDDVVLATKNGQAMRF 670 Query: 556 DPITLPSARGQGEPLTGKLT--LPPGATVDHMLME---SDDQKLLMASDAGYGFVCTFND 610 + + R G G + L G V M + ++ +LL S+ G G +D Sbjct: 671 EATLV---RDTGRATQGVIGIRLREGDEVVSMALVPGNDEEGELLAISECGLGKRTKVSD 727 Query: 611 LVARNRAGKALITLPENAHVMPPVVIED--ASDMLLAITQAGRMLMFPVSDLPQLSK-GK 667 ++ R G +ITL V + ++ L+ +T+ G ++ V ++ + + Sbjct: 728 YPSKGRGGLGVITLDVTDKTGKLVTLAHVAGNEELMVLTEKGTVIRTRVEEVRVTGRNAQ 787 Query: 668 GNKIINIPSAEAARG 682 G K+INI + Sbjct: 788 GVKVINIGDKDRVID 802 >UniRef50_O84192 DNA gyrase subunit A n=16 Tax=Bacteria RepID=GYRA_CHLTR Length = 836 Score = 776 bits (2004), Expect = 0.0, Method: Composition-based stats. Identities = 241/746 (32%), Positives = 391/746 (52%), Gaps = 43/746 (5%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 L E + +YL YSM VI+ RALP DGLKP QRRI+YAM +L L K +K A+ G Sbjct: 12 NLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHRKCAKICG 71 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 D G YHPHG+S Y +V MAQ ++ RYPLVDGQGN+G+ D AAMRYTE+RL+ Sbjct: 72 DTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDP-AAAMRYTEARLTHS 130 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 + LL +L + T D VPN+D T EP + P++ PN+L NG++GIAVGMAT+IPPHNL E+ Sbjct: 131 AIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPPHNLGEL 190 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248 +A + ++ +T+++ +L+++ GPD+PT II IR Y GRG +R+RA E Sbjct: 191 IEATLLVLANSQTSIEDILEVMPGPDFPTGG-IICGTEGIRSTYYTGRGKLRLRARMHVE 249 Query: 249 DG------AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 + ++++ +P+ V+ +R++EQIA + K L + D+RDESD + R+V+ + Sbjct: 250 ENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDG-IRVVLELK 308 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRL 362 + V+N L+ TD++ ++ N+ + P N+ ++S W+ R D ++RR Sbjct: 309 KGE-SSEVVINRLYKFTDVQVTFGANMLALD-KNLPRTMNIHRMISAWIRHRMDVIQRRT 366 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEAILE 419 Y L K R HILEG L A +DEV++ IR N++ K L+ F +E QA AILE Sbjct: 367 RYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQALAILE 426 Query: 420 LKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSP 479 L+L L LE K++ E SEL ++ + +LA E + +++++ELQ + + RR+ Sbjct: 427 LRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHKTPRRTR 486 Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS--------AKGHDIDAPGLNYKAG-DS 530 + E + D++ E V I +S +V+ K G + K G D Sbjct: 487 I-EMDAGDVRDIEDIISDESVIITISGDDYVKRMPVKVFREQKRGGQGVTGFDMKKGSDF 545 Query: 531 FKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLT-LPPGATVDHML- 586 KA + ++ + G+ Y + LP R +G+P+ L + PG V +L Sbjct: 546 LKAVYSASTKDYLLIFTNFGQCYWLKVWRLPEGERRAKGKPIINFLEGIRPGEQVAAVLN 605 Query: 587 --MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLL 644 + L +A+ G + + + + G + + + ++ I + + ++ Sbjct: 606 VKRFEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIAARHIANDEEKVM 665 Query: 645 AITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH-- 701 T+ G + FP + + + +G + +++ + + + ++ V QS L + Sbjct: 666 LFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQ----DFVVSCQVVTEDQSVLVVCDN 721 Query: 702 -VGKRKIKLRPEELQKVTGERGRRGT 726 GKR + E RG G Sbjct: 722 GFGKRSLVCDFRE-----TNRGSVGV 742 Score = 78.4 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 72/453 (15%), Positives = 146/453 (32%), Gaps = 78/453 (17%) Query: 280 PMVDDLRDESDHENPTR-LVIVPRSNRVDMDQVMN-HLFATTDLEKSYRINLNMIGLDGR 337 +V +R+ S+ E+ + LV + + ++ L+ T LE Sbjct: 392 EVVKTIRESSNKEHAKQQLVELFSFSEAQALAILELRLYQLTGLEA-------------D 438 Query: 338 PAVKNLLEILSEWLVFRR---------DTVRRRLNYRLEKVLK-----RLHILEGLLVAF 383 K E+L + +R+ D +R L L KV K R+ + G + Sbjct: 439 KVQKEYSELLEKITYYRKVLAEEELVKDIIREELQ-ELHKVHKTPRRTRIEMDAGDVRDI 497 Query: 384 LNI---DEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSEL 440 +I + VI I +D K + F + + + + K + Sbjct: 498 EDIISDESVIITISGDDYVKRMPVKVFREQKRGGQGV--------TGFDMKKGSDFLKAV 549 Query: 441 -EKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSP----------LQEREEAKAM 489 I + + L L +RR+ ++ E+ A+ Sbjct: 550 YSASTKDYLLIFTNFGQCYWLKVWRLPE------GERRAKGKPIINFLEGIRPGEQVAAV 603 Query: 490 SEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG------LNYKAGDSFKAA-VKGKSNQP 542 + ++ G V+ +P L GD AA + Sbjct: 604 LNVKRFEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIAARHIANDEEK 663 Query: 543 VVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGAT-VDHMLMESDDQKLLMASD 599 V+ G + + R G G ++L V + ++DQ +L+ D Sbjct: 664 VMLFTRLGMAVRFPHDKV---RPMGRAARGVRGVSLKNEQDFVVSCQVVTEDQSVLVVCD 720 Query: 600 AGYGFVCTFNDLVARNRAGK----ALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 G+G D NR +I V+ + + D D +L ++ G+ + Sbjct: 721 NGFGKRSLVCDFRETNRGSVGVRSIVINQRNGD-VLGAISVTD-CDSILLMSAQGQAIRI 778 Query: 656 PVSDLPQLSKG-KGNKIINIPSAEAARGEDGLA 687 + D+ + + +G +++N+ + + L+ Sbjct: 779 NMQDVRVMGRATQGVRLVNLREGDTLVAMEKLS 811 >UniRef50_P22446 DNA gyrase subunit A n=3 Tax=Mycoplasma RepID=GYRA_MYCPN Length = 839 Score = 774 bits (2000), Expect = 0.0, Method: Composition-based stats. Identities = 247/742 (33%), Positives = 392/742 (52%), Gaps = 34/742 (4%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 + ++L E +++ Y+M VI+ RALP DGLKPV RR++Y G++ FKKSA Sbjct: 20 IKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHDRPFKKSA 79 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 R VGDV+ K+HPHGD A Y+ M MAQ FS RY L+DG GN+G+ D + AA RYTE+R Sbjct: 80 RIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDGDRP-AAQRYTEAR 138 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 LSK + LL ++ + T D+V N+DG QEP +LPA PN+L NG++GIAVGM+T IP HN Sbjct: 139 LSKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIAVGMSTSIPSHN 198 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 L E+ Q I LID P T++ LL +++GPD+PT A II ++ I +E G+G+V +R+ Sbjct: 199 LSELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTK-GIESYFETGKGNVVIRSK 257 Query: 245 WKKE----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 E A+V++ +P+ V+ ++E+I ++ +++ + D+RDES E RLVI Sbjct: 258 VSIEQLPTRAALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESSREG-IRLVIE 316 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360 + + V + ++N LF +T L+ + +N+ + + G P + N+ + L+ +L + D + R Sbjct: 317 VKRDTV-PEVLLNQLFKSTRLQVRFPVNM-LALVKGAPKLLNMKQALTVYLEHQLDVLIR 374 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEAI 417 + + L+K +R HIL GLL+A LNIDEVI II+ N AL RFGL E QA A+ Sbjct: 375 KTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHERFGLDEIQARAV 434 Query: 418 LELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRR 477 L+++LR L+ LE K++ EQ EL+ + Q +LA ++ L+K++L + +GD RR Sbjct: 435 LDMRLRSLSVLEVNKLQTEQQELKALIEFCQQVLADKQLQLKLIKEQLTKINEQFGDPRR 494 Query: 478 SPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS--------AKGHDIDAPGLNYKAGD 529 S + + + D++ E V I +S G+++ + GL D Sbjct: 495 SEILYGISE-DIDDEDLITQENVVITMSTNGYLKRIGVDAYNLQHRGGVGVKGLTTYTDD 553 Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLM 587 S + ++ ++F G+ Y I +P +G P + + + ++ Sbjct: 554 SISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPPGFRTNKGIPAVNLIKIDKDEKICALIS 613 Query: 588 ESDDQ--KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLA 645 +D Q + G + ++ GK I EN V+ V+ D + Sbjct: 614 VNDYQNGYFFFCTKNGTIKRTSLSEFANILSIGKRAILFKEND-VLFSVIRTSGQDDIFI 672 Query: 646 ITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGK 704 + AG ++ F + LS+ G IN+ E G L S L Sbjct: 673 GSTAGFVVRFHEDTVRPLSRAAMGVLGINLNQCEFVNG------LSTSSNGSLLLSVGQN 726 Query: 705 RKIKLRPEELQKVTGERGRRGT 726 KL + ++T +R +G Sbjct: 727 GIGKLTSIDKYRLT-KRNAKGV 747 >UniRef50_O83051 DNA gyrase subunit A n=6 Tax=Bacteria RepID=GYRA_TREPA Length = 813 Score = 774 bits (1998), Expect = 0.0, Method: Composition-based stats. Identities = 231/763 (30%), Positives = 400/763 (52%), Gaps = 44/763 (5%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 +++ + AY++YSM VI+ RALP + DGLKPV RRI+YAM E GL S +K A+ V Sbjct: 15 ISIETEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYAMEEKGLRFSGPTRKCAKIV 74 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 GDVLG +HPHGD++ Y+A+V + Q FS RYP++ QGN+G AA RYTE+++++ Sbjct: 75 GDVLGSFHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTI-GGDPPAAYRYTEAKMAR 133 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 +E ++ ++ + T +VPNFD + EP +LP R P +L NG++GIAVGM T++PPHNLRE Sbjct: 134 IAESMVEDIKKETVSFVPNFDDSDVEPTVLPGRFPFLLANGSSGIAVGMTTNMPPHNLRE 193 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 +A A A I+ P ++ +L D + GPD+PT II + IR+ YE GRG + +RA + Sbjct: 194 IAAAISAYIENPNLSIQELCDCINGPDFPTGG-IIFGKNGIRQSYETGRGKIVVRARFTI 252 Query: 248 E-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 E ++ + +P+QV+ ++ +I R K + + ++ DE+ R+V+ + Sbjct: 253 ETDSKGRDTIIFTEVPYQVNTTMLVMRIGELARAKVIEGIANVNDETSDRTGLRIVVELK 312 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRL 362 V+NHLFA T L+ S+ + +N+ ++GRP + L +++ ++ R D V RR Sbjct: 313 KGTP-AQVVLNHLFAKTPLQSSFNV-INLALVEGRPRMLTLKDLVRYFVEHRVDVVTRRA 370 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAEAILE 419 ++ L K +R+H++ L+ A ID++I +IR+ K L +F QA+AI++ Sbjct: 371 HFELRKAQERIHLVRALIRALDAIDKIITLIRHSQNTELAKQRLREQFDFDNVQAQAIVD 430 Query: 420 LKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSP 479 ++++ L LE +R E +L + L+ +L S +K+ ++KKE + A +GDDRR+ Sbjct: 431 MQMKRLTGLEVESLRTELKDLTELISSLEELLTSPQKVLGVVKKETRDIADMFGDDRRTD 490 Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKA--------GDSF 531 + E + + D + E + I++S +G+++ K D Sbjct: 491 IV-SNEIEYLDVEDFIQKEEMVILISHLGYIKRVPVSAYRNQNRGGKGSSSANLAAHDFI 549 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLM-- 587 ++ V+FV S GR+Y + +P + +G + L + + ++ Sbjct: 550 SQIFTASTHDYVMFVTSRGRAYWLKVYGIPESGRANRGSHIKSLLMVATDEEITAIVSLR 609 Query: 588 -ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI 646 S+ + MA+ G T ++ V G + L ++ V+++D D ++ I Sbjct: 610 EFSNKSYVFMATARGVVKKVTTDNFVNAKTRGIIALKLSGGDTLVSAVLVQD-EDEVMLI 668 Query: 647 TQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHV--- 702 T+ G+ L ++ ++ + G I + S ED +A + + Q + I Sbjct: 669 TRQGKALRMSGREVREMGRNSSGVIGIKLTS------EDLVAGVLRVSEQRKVLIMTENG 722 Query: 703 -GKR------KIKLRPEELQKVTGERGRRGTLMRGLQRIDRVE 738 GKR + R QK+ + R+G ++ L +D E Sbjct: 723 YGKRVSFSEFSVHGRGTAGQKIYTQTDRKGAIIGALAVLDTDE 765 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 81/201 (40%), Gaps = 14/201 (6%) Query: 497 SEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTG 550 ++ + + G V+ + L GD+ +AV + V+ + G Sbjct: 613 NKSYVFMATARGVVKKVTTDNFVNAKTRGIIALKLSGGDTLVSAVLVQDEDEVMLITRQG 672 Query: 551 RSYAIDPITLPSARGQGEPLTGKL--TLPPGATVDHMLMESDDQKLLMASDAGYGFVCTF 608 ++ + + R G +G + L V +L S+ +K+L+ ++ GYG +F Sbjct: 673 KALRMSGREV---REMGRNSSGVIGIKLTSEDLVAGVLRVSEQRKVLIMTENGYGKRVSF 729 Query: 609 NDLVARNR--AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKG 666 ++ R AG+ + T + + + +D + IT G+ + V + L +G Sbjct: 730 SEFSVHGRGTAGQKIYTQTDRKGAIIGALAVLDTDECMCITGQGKTIRVDVCAISVLGRG 789 Query: 667 K-GNKIINIPSAEAARGEDGL 686 G ++++I ++ G + Sbjct: 790 AQGVRVLDIEPSDLVVGLSCV 810 >UniRef50_A8G5D2 DNA gyrase/topoisomerase IV, subunit A n=16 Tax=Cyanobacteria RepID=A8G5D2_PROM2 Length = 865 Score = 773 bits (1997), Expect = 0.0, Method: Composition-based stats. Identities = 243/719 (33%), Positives = 396/719 (55%), Gaps = 37/719 (5%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 +D + L +YL Y+M VI+ RALP DGLKPV RRI+YAM ELGL + ++ Sbjct: 16 NDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSGRPYR 75 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K AR VG+VLGKYHPHGD+A Y+A+V MAQ FS R PL+DG GN+G+ D+ AAMRYT Sbjct: 76 KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVDNDPP-AAMRYT 134 Query: 122 ESRLSKYSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 ESRL ++ LL ++ T D+ NFDG+ QEP +LPAR+P +LLNG++GIAVGMAT+I Sbjct: 135 ESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNI 194 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL E+ ++I P +L +I++GPD+PT +I+ R IR+ ++ G+GS+ Sbjct: 195 PPHNLGELINGLKSIIKNPSIEDRELFEIIKGPDFPTGGQIL-GREGIRETFKTGKGSIT 253 Query: 241 MRAVWKK---------EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDH 291 MR V E AV+I+ LP Q + A ++E+IA + KKL + D+RDESD Sbjct: 254 MRGVANIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGISDIRDESDR 313 Query: 292 ENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWL 351 + R+VI + + V+N+LF T L+ ++ N+ + + G P +L ++L +L Sbjct: 314 DG-MRIVIELKRDSY-PQVVLNNLFKLTPLQNNFSANI-LALVKGEPTTLSLRKMLDVFL 370 Query: 352 VFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFG 408 FR +T+RRR + L+K +R HI++GLL+A +DE+I +IR+ + + L + Sbjct: 371 DFRVETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSISAREKLQNEHK 430 Query: 409 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 L+ Q++AIL+++LR L LE KI+ E +EL ++ + Q IL S+ ++ ++ +EL Sbjct: 431 LSSIQSDAILQMQLRRLTALEADKIKEEHNELTRKINLYQQILNSKERIFEIILEELNQI 490 Query: 469 AQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP------- 521 + R++ + + + + D++ ++ ++L++ G+++ +D ++ Sbjct: 491 DGKFSSPRKTEILDL--GGGLDDIDLIANDRSVVLLTEAGYLKRMPVNDFESTSRGSRGK 548 Query: 522 -GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPP 578 G K D K + + ++ G +YA+ +P S +G P L +P Sbjct: 549 AGTKTKEDDDVKLFISCNDHDTLLLFSDRGVAYALPAYRVPMSSRTAKGTPSVQLLPIPR 608 Query: 579 GATVDHMLMES---DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVV 635 + ++ DD+ LLM + AG+ + G I L + + V Sbjct: 609 EEKITSLVAVDSFVDDRYLLMLTKAGFIKRTALSAFSKIRSNGLIAINLEDGDAL-TWVR 667 Query: 636 IEDASDMLLAITQAGRMLMF--PVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYV 691 + D +L ++ G + F +++L L + +G K +N+ + D L V Sbjct: 668 LSKEGDSVLIGSKTGIAIHFRLDINELRPLGRTARGVKSMNLREGDNLVSMDVLTSNLV 726 Score = 66.1 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 40/254 (15%), Positives = 82/254 (32%), Gaps = 42/254 (16%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSA------KGHDIDAPGLNYKAGDSFKA 533 + E+ ++ D + ++L++ G+++ K +N + GD+ Sbjct: 606 IPREEKITSLVAVDSFVDDRYLLMLTKAGFIKRTALSAFSKIRSNGLIAINLEDGDALTW 665 Query: 534 AVKGKSNQPVVFVDSTGRS--YAIDPITL-PSAR-GQGEPLTGKL--------------- 574 K V+ TG + + +D L P R +G Sbjct: 666 VRLSKEGDSVLIGSKTGIAIHFRLDINELRPLGRTARGVKSMNLREGDNLVSMDVLTSNL 725 Query: 575 --------TLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRA--GKALITL 624 L + SD +L+AS G G + RA G I Sbjct: 726 VDQLAKIEDLTEDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAIKF 785 Query: 625 PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGE 683 + + + + LL +T+ G ++ + Q S+ G K+ + Sbjct: 786 RIKDDQLVCLKVLGEGEELLLVTEKGVIVRTNADKISQQSRAATGVKLQRLDDG------ 839 Query: 684 DGLAQLYVLPPQST 697 D L+++ ++P + Sbjct: 840 DHLSEVVLVPREQI 853 >UniRef50_D0B2I0 DNA topoisomerase IV subunit A n=40 Tax=Rhizobiales RepID=D0B2I0_BRUME Length = 770 Score = 772 bits (1993), Expect = 0.0, Method: Composition-based stats. Identities = 282/764 (36%), Positives = 428/764 (56%), Gaps = 47/764 (6%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 ER+ L E YL Y++ IM RALP + DGLKPV RRI++AM L LN + K A Sbjct: 15 IERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYAKCA 74 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 R VGDV+GK+HPHGD++ Y+A+V +AQ F+ RYPLVDGQGN+G D + AAMRYTE+R Sbjct: 75 RIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDG-DNAAAMRYTEAR 133 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 +++ + LLL + + D+ P ++ +EP +LP PN+L NG+ GIAVGMAT+IPPHN Sbjct: 134 MTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPPHN 193 Query: 185 LREVAQAAIALIDQPKTTLDQLLD----------------------IVQGPDYPTEAEII 222 + E+ +A+ LI+ P +++L+ V+GPD+PT ++ Sbjct: 194 VAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGILV 253 Query: 223 TSRAEIRKIYENGRGSVRMRAVWKKEDGA-----VVISALPHQVSGARVLEQIAAQMRNK 277 I + Y GRG+ R+RA W KE+G +V++ +P+QV +R++E+IA + K Sbjct: 254 EEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLLAK 313 Query: 278 KLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR 337 KLP++DD+RDES + R+V+ P++ VD + +M LF T+LE +N+N++ Sbjct: 314 KLPLLDDIRDESAED--IRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHGKV 371 Query: 338 PAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED 397 P V +L +L EWL R++ + RR +RL ++ KRL IL G L+A+LN+DEVI IIR ED Sbjct: 372 PNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIREED 431 Query: 398 EPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKM 457 EPK LM F LT+ QAE+IL ++LR L KLEE +IR E +L E+ L+G+LAS + Sbjct: 432 EPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGTRQ 491 Query: 458 NNLLKKELQADAQAYG-----DDRRSPLQEREE-AKAMSEHDMLPSEPVTIVLSQMGWVR 511 + E++A + +G RR+ M+ EPVTIV+S+ GW+R Sbjct: 492 WKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGWLR 551 Query: 512 SAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLT 571 + KGH D L++K GD K A ++ ++F + G+ + I TLP RG GEP+ Sbjct: 552 AMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEPIR 611 Query: 572 GKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVM 631 + + + + KLL+ S G GF+ ++ VA R GK ++ + Sbjct: 612 ILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDEAK 671 Query: 632 PPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYV 691 + D + + + +ML+FP+SD+P++++GKG ++ G+ + Sbjct: 672 LCQRVSG--DHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDG-------GVCDVRT 722 Query: 692 LPPQSTLTI-HVGKRKIKLRPEELQKVTGERGRRGTL-MRGLQR 733 L+ R EEL + G R G L +G R Sbjct: 723 FAIADGLSWQDSADRTFNRSKEELVEWIGARASAGRLVPKGFPR 766 >UniRef50_P48371 DNA gyrase subunit A n=482 Tax=cellular organisms RepID=GYRA_NEIGO Length = 916 Score = 771 bits (1992), Expect = 0.0, Method: Composition-based stats. Identities = 241/709 (33%), Positives = 381/709 (53%), Gaps = 67/709 (9%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 ++L + +YL+Y+M VI+ RALP + DGLKPV RR++YAM EL N +A +KKSAR V Sbjct: 19 VSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARIV 78 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 GDV+GKYHPHGDSA Y+ +V MAQ F+ RY L+DGQGN+G+ D + AAMRYTE R++K Sbjct: 79 GDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGL-AAAAMRYTEIRMAK 137 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 S +L+++ + T ++ PN+DG+ EP +LP R P +L+NG++GIAVGMAT+IPPHNL + Sbjct: 138 ISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLTD 197 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 A + L+D+PKT +D+L+DI+Q PD+PT A I +R+ Y+ GRG V MR Sbjct: 198 TINACLRLLDEPKTEIDELIDIIQAPDFPTGATI-YGLGGVREGYKTGRGRVVMRGKTHI 256 Query: 248 -------EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 E +VI +P+QV+ A+++E+I +R K L + +LRDESD R+VI Sbjct: 257 EPIGKNGERERIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSG-MRVVIE 315 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360 + N + + V+N L+ T L+ S+ IN+ ++ +DG+P + NL +ILSE+L RR+ V R Sbjct: 316 LKRNE-NAEVVLNQLYKLTPLQDSFGINM-VVLVDGQPRLLNLKQILSEFLRHRREVVTR 373 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSR----------- 406 R +RL+K HI E VA NIDE+I++I+ N E K L++R Sbjct: 374 RTLFRLKKARHEGHIAERKAVALSNIDEIIKLIKESPNAAEAKEKLLARPWASSLVEEML 433 Query: 407 -------------------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELE 441 + L+E QA+AIL + LR+L L++ +I L Sbjct: 434 TRSGLDLEMMRPEGLVANIGLKKQGYYLSEIQADAILRMSLRNLTGLDQKEIIESYKNLM 493 Query: 442 KERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVT 501 + IL+ ++ +++ EL+ YGD+RRS + +++ D++P + Sbjct: 494 GKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEI--NPFGGDIADEDLIPQREMV 551 Query: 502 IVLSQMGWVRSAKGHDIDAPGLN--------YKAGDSFKAAVKGKSNQPVVFVDSTGRSY 553 + L+ G++++ D A K D + ++ ++ + G+ + Sbjct: 552 VTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLGKCH 611 Query: 554 AIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLM---ESDDQKLLMASDAGYGFVCTF 608 I LP +G P+ + L G V +L +DQ + A+ G Sbjct: 612 WIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQL 671 Query: 609 NDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPV 657 + G I L E +++ +D ++ + G+ + F Sbjct: 672 SAFKNVRAQGIKAIALKEGDYLVGAAQ-TGGADDIMLFSNLGKAIRFNE 719 Score = 83.0 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 42/261 (16%), Positives = 85/261 (32%), Gaps = 53/261 (20%) Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFK 532 L+E E+ A+ P + + G V+ + + K GD Sbjct: 635 QLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLV 694 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPI-------------------------------TLP 561 A + ++ + G++ + TLP Sbjct: 695 GAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTLP 754 Query: 562 SARGQGEPLTGK------LTLPPGATVDHMLMESDDQK-----LLMASDAGYGFVCTFND 610 S + P + LP + ++ + + + +L A+ GYG D Sbjct: 755 SGKNGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIAD 814 Query: 611 LVARNRAGK--ALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-G 666 +N+ G+ I E N ++ ++ +D L+ IT G ++ V + + + Sbjct: 815 YSRKNKGGQGSIAINTGERNGDLVAATLV-GETDDLMLITSGGVLIRTKVEQIRETGRAA 873 Query: 667 KGNKIINIPSAEAARGEDGLA 687 G K+IN+ E + +A Sbjct: 874 AGVKLINLDEGETLVSLERVA 894 Score = 44.1 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 34/103 (33%), Gaps = 12/103 (11%) Query: 501 TIVLSQMGWVRSAK----------GHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTG 550 + + G+ + G A + GD A + G+++ ++ + S G Sbjct: 798 VLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVAATLVGETDD-LMLITSGG 856 Query: 551 RSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQK 593 + G+ + L G T+ + ++D+ Sbjct: 857 VLIRTKVEQIRE-TGRAAAGVKLINLDEGETLVSLERVAEDES 898 >UniRef50_Q9ZLD9 DNA gyrase subunit A n=50 Tax=Campylobacterales RepID=GYRA_HELPJ Length = 828 Score = 771 bits (1992), Expect = 0.0, Method: Composition-based stats. Identities = 262/743 (35%), Positives = 410/743 (55%), Gaps = 35/743 (4%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 + + E +YL YSM VI+ RALP DGLKPV RRI+YAM ELGL + +KKSAR Sbjct: 14 EVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKKSARI 73 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VGDV+GKYHPHGD+A Y+A+V MAQ FS R LVDGQGN+G+ D + AAMRYTE+R++ Sbjct: 74 VGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDG-DNAAAMRYTEARMT 132 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 K SE +L ++ + T D+VPN+D TL+EP +LP+RLPN+L+NG GIAVGMAT IPPH + Sbjct: 133 KASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPHRID 192 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 E+ A ++ P LD++L+ V+GPD+PT II +A I + Y+ GRG V++RA Sbjct: 193 EIIDALAHVLGNPNAELDKILEFVKGPDFPTGG-IIYGKAGIVEAYKTGRGRVKVRAKVH 251 Query: 247 KEDGA----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 E +V+ +P Q + A+++EQI+ R K++ + ++RDESD E R+VI + Sbjct: 252 VEKTKNKEIIVLGEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG-IRVVIELK 310 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRL 362 + + + V+NHL+ T +E ++ I L I + P + LLE+L +L R+ + RR Sbjct: 311 RDAMS-EIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLRLFLNHRKTIIIRRT 368 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP---KPALMSRFGLTETQAEAILE 419 + LEK R HILEG L+A NIDE++ +I+ P K AL+ RF L+E Q++AILE Sbjct: 369 IFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALIERFSLSEIQSKAILE 428 Query: 420 LKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSP 479 ++L+ L LE KI+ E L + D L GIL SE ++N ++K EL + + RR+ Sbjct: 429 MRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRRTE 488 Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK--------AGDSF 531 +QE E+ + D++ +EP+ + +S G+V+ + K D Sbjct: 489 IQESYES--IDTEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGSTYEDDFI 546 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHMLME- 588 + ++ ++F+ + G+ Y + +P A G+ + ++L P + L Sbjct: 547 ENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPNEKIMATLSTK 606 Query: 589 --SDDQKLLMASDAGYGFVCTFNDL-VARNRAGKALITLPENAHVMPPVVIEDASDMLLA 645 SD++ L + G ++ R+ +G I L E ++ V++ + LL Sbjct: 607 DFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLI 666 Query: 646 ITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGK 704 + G + FP+ D+ ++ + +G I + + G + + + L Sbjct: 667 ASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVG-----AVVISDDSNKLLSVSEN 721 Query: 705 RKIKLRPEELQKVTGERGRRGTL 727 K E + RG +G + Sbjct: 722 GLGKQTLAEAYR-EQSRGGKGVI 743 >UniRef50_D1N7T7 DNA gyrase, A subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7T7_9BACT Length = 885 Score = 771 bits (1991), Expect = 0.0, Method: Composition-based stats. Identities = 233/723 (32%), Positives = 382/723 (52%), Gaps = 41/723 (5%) Query: 1 MSDMAER---LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 57 MSD+ R + + + AYL YS+ V + RA+P + DGLKPV RRI+YAM +LGL S Sbjct: 1 MSDLGTRDFQVNIEDIMHTAYLQYSLSVNVGRAIPDVRDGLKPVNRRILYAMRQLGLGKS 60 Query: 58 AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 117 K AR VG+V+GKYHPHGD+A Y+A+V +AQ FS R PL++GQGN+G D AA Sbjct: 61 HATVKCARVVGEVMGKYHPHGDAAIYDALVRLAQDFSMRNPLIEGQGNFGNIDGDP-AAA 119 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RYTE R+ + +E LL+++ + T + +PNFD + EP++LPAR P +L+NGTTGI VGMA Sbjct: 120 SRYTECRMERLAEELLADIEKDTVNMIPNFDESETEPEVLPARYPQLLVNGTTGIGVGMA 179 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T IPPHNL EV A I L+D PK T+D+L++ + GPD+PT A II R +R+ Y+ G G Sbjct: 180 TSIPPHNLGEVIDATICLLDNPKATVDELMEYLPGPDFPTGA-IIRGRYSMRQFYQTGHG 238 Query: 238 SVRMRAVWKKEDG----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHEN 293 S+++RA + +++S +P+ + +++++IA + +K++ + LRDES Sbjct: 239 SIKIRAKADIIEKDGREQIIVSEIPYAICKEQLVKKIAELVNDKRITGISGLRDESSKRT 298 Query: 294 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVF 353 R+VI + + V+N LFA T LE + + ++ RP NL+++L ++ Sbjct: 299 GMRIVIEIKRGAMG-SVVLNQLFAHTMLETTIGCTMLVVDH-NRPRTMNLVQVLQAYIDH 356 Query: 354 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLT 410 R + + RR + L+K R HILEGL+ A NI++V++IIR + L++RF T Sbjct: 357 RLEVIVRRTLFELKKAQARAHILEGLMKALANINDVVQIIRESRSRQDAAANLIARFEFT 416 Query: 411 ETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQ 470 + Q +AIL+++L L L + E EL+K + L + AS ++K EL+ + Sbjct: 417 QIQVDAILDMRLHQLTGLAIETLTAEYEELKKRIEYLTALAASREMQLGVIKDELKEIRE 476 Query: 471 AYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------G 522 Y D RR+ + + ++ D++P I +S G+++ G Sbjct: 477 KYADPRRTEI--TIDDTDLNIADLIPRHSCVITVSNTGYIKRVPADTYRTQHRGGKGIIG 534 Query: 523 LNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGA 580 + K D + S+ + F G Y ++ +P G+G +T + + PG Sbjct: 535 METKEEDHVEHLFNADSHDIIFFFTDRGFMYWLNVYEIPEGSRTGKGRAITNMIKVEPGE 594 Query: 581 TVDHMLME------SDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPV 634 + ML ++ ++MAS G+ R G + + E+ ++ Sbjct: 595 KICAMLTVRQEEFDDPNKYIVMASRRGFIKKSELALFKNLRRVGLRALVIEEDDDLIGAG 654 Query: 635 VIEDASDMLLAITQAGRMLMFPVSD--LPQLSK-GKGNKIINIPSAEAARGEDGLAQLYV 691 + E+ ++ +L T+ G +F D + + + +G + D + L + Sbjct: 655 ISENGNE-ILLSTKFGMACLFDQDDDQIRPMGRTARGVTGMRFK-----IEGDSVVSLEI 708 Query: 692 LPP 694 + Sbjct: 709 IRE 711 Score = 67.2 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 4/102 (3%) Query: 593 KLLMASDAGYGFVCTFNDLVARNR--AGKALITLPENAHVMPPVVIEDASDMLLAITQAG 650 ++L+ +D G G + R G I L E V+ V I D +L T+ G Sbjct: 744 EVLVVTDGGMGKRSYVSTYRKTKRGAKGVVNIKLREGETVLSVVQIT-EEDEILLTTERG 802 Query: 651 RMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYV 691 +++ P ++ ++ + G +I+N+ S + G L ++ V Sbjct: 803 QLVRIPAHEIRRVGRASYGVRIMNLNSGDRITGVAKLVEVDV 844 >UniRef50_C6XJ15 DNA gyrase, A subunit n=28 Tax=Bacteria RepID=C6XJ15_HIRBI Length = 981 Score = 769 bits (1987), Expect = 0.0, Method: Composition-based stats. Identities = 254/751 (33%), Positives = 388/751 (51%), Gaps = 64/751 (8%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 D + + + + +YL+Y+M VI+ RALP + DGLKPV RRI+++MSE G +KK Sbjct: 41 DGVSPINISDEMKKSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMSEQGYTFDKAYKK 100 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SAR VGDV+GKYHPHGD + Y+A+V MAQ FS PL+DGQGN+G+ D AAMRYTE Sbjct: 101 SARVVGDVIGKYHPHGDQSVYDALVRMAQNFSMGLPLLDGQGNFGSMDGDP-AAAMRYTE 159 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +L K + LL+++ + T ++ N+DG+ +EP +LPAR PN+L+NG GIAVGMAT+IPP Sbjct: 160 VKLKKVANHLLADIDKDTVNFQENYDGSEKEPIVLPARFPNLLVNGGGGIAVGMATNIPP 219 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HNL EV A IA+I+ P + LL+IV GPD+PT A II RA R GRGSV MR Sbjct: 220 HNLGEVIDATIAMIEDPNIDDEALLEIVPGPDFPTGALII-GRAGSRSGLMTGRGSVIMR 278 Query: 243 AVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 + E+ A+V + +P+QV+ A ++E+IA +R+K++ + D+RDESD + + Sbjct: 279 SKSSIEELKNGREALVFTEIPYQVNKASMIEKIAELVRDKRIEGIADMRDESDRDGVRVV 338 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 V V R + V+N LF T L+ S+ +N+ + GRP + +L IL +++FR + Sbjct: 339 VEVKR--DASPEVVLNQLFRYTQLQTSFGMNMLALNS-GRPELLSLKAILQAFIIFREEV 395 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP---KPALMSR-------- 406 V RR + L K R H+L GL +A NIDEVI+IIR+ +P + LM R Sbjct: 396 VARRTKFELNKARARAHLLVGLALAVANIDEVIKIIRHSPDPSTAREKLMDRAWPAQDML 455 Query: 407 ------------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQ 448 L+E QA AIL+L+L+ L L +I E L Sbjct: 456 SLINLIADRRTVANEVGEIRLSEEQARAILDLRLQRLTGLGRDEIGDEARGLADRIADYL 515 Query: 449 GILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMG 508 IL+S ++ ++ +EL+ + + RRS E E M + + E + ++ + G Sbjct: 516 DILSSRPRVMEIITEELRVVREEFAIPRRSQFIEAE--LDMDDEAFIEKEDMVVMFTHGG 573 Query: 509 WVRSAKGHDIDAP--------GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITL 560 + + G+ K D+ ++ V+F STG Y + Sbjct: 574 YAKRTALSIYRTQHRGGRGRSGMGTKEEDAVTRFFVANTHTEVLFFSSTGMVYKTKVWRM 633 Query: 561 P--SARGQGEPLTGKLTLPPGATVDHMLMESDDQ------KLLMASDAGYGFVCTFNDLV 612 P + + +G+ L L L G T+ ++ +D+ +L A+ +G +D Sbjct: 634 PLGTPQSRGKALVNLLPLDKGETITSVMPLPEDEEERANMNILFATRSGGVRRNKLSDFT 693 Query: 613 ARNRAGKALITLPEN-----AHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQ--LSK 665 NR GK + L E + V I D ++ T G+ + F V D+ Sbjct: 694 QVNRNGKIAMKLDEAQVAGSDDGIVGVQICSPDDDVMLTTALGQCIRFKVEDVRVFTGRT 753 Query: 666 GKGNKIINIPSAEAARGEDGLAQLYVLPPQS 696 G + I + + + L + + P++ Sbjct: 754 STGVRGIRLANGDEVISMLVLRHMDITSPEA 784 Score = 65.7 bits (159), Expect = 6e-09, Method: Composition-based stats. Identities = 44/271 (16%), Positives = 76/271 (28%), Gaps = 76/271 (28%) Query: 492 HDMLPSEPVTIVL-SQMGWVRSAKGHDIDAPGLNYK------------AGDSFKAAVKGK 538 D + I+ ++ G VR K D N K + D Sbjct: 665 EDEEERANMNILFATRSGGVRRNKLSDFTQVNRNGKIAMKLDEAQVAGSDDGIVGVQICS 724 Query: 539 SNQPVVFVDSTGRSYAIDPITL-----------------------------------PSA 563 + V+ + G+ + P A Sbjct: 725 PDDDVMLTTALGQCIRFKVEDVRVFTGRTSTGVRGIRLANGDEVISMLVLRHMDITSPEA 784 Query: 564 RGQGEPLTGK---LTLPPGATVDHMLMESD---------------------DQKLLMASD 599 R + + L G T ++ E D ++ LL ++ Sbjct: 785 RAYLKHASAMRRALGEEEGDTEIDVVSEPDADDEGDEAALSPERIAELGAAEEFLLTITE 844 Query: 600 AGYGFVCTFNDLVARNRAGKALI--TLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPV 657 G G + D R GK LI L + IED D ++ +T AG+++ P Sbjct: 845 DGMGKRASAYDYRVTGRGGKGLIAHKLNAGRRLAAAFPIEDG-DEIMLVTDAGQLIRTPA 903 Query: 658 SDLPQLSKG-KGNKIINIPSAEAARGEDGLA 687 + + +G K++ E + LA Sbjct: 904 KQIRIAGRATQGVKVLRTSGEERVVSVERLA 934 >UniRef50_Q2S0H7 DNA gyrase, A subunit n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S0H7_SALRD Length = 910 Score = 768 bits (1983), Expect = 0.0, Method: Composition-based stats. Identities = 250/826 (30%), Positives = 400/826 (48%), Gaps = 98/826 (11%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 + + E +++Y++YSM VI+ RALP + DGLKPV RR++Y M ELGL A +KKSAR V Sbjct: 11 INIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLTQGANYKKSARIV 70 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 G+VLGKYHPHGDS+ Y+ +V MAQ FS RYPL DGQGN+G+ D S AAMRYTE+R+++ Sbjct: 71 GEVLGKYHPHGDSSVYDTLVRMAQHFSMRYPLADGQGNFGSVDG-DSAAAMRYTEARMTR 129 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 +E +L+++G+ T D NFDGT++EP +LPA PN+L+NG GIAVGMAT IPPHNL E Sbjct: 130 IAEQMLTDIGKETVDTQENFDGTMEEPTVLPAAFPNMLVNGADGIAVGMATKIPPHNLGE 189 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 A +A ID P +D L+D + PD+PT II A + + Y GRG V MRA + Sbjct: 190 TIDATVAYIDDPDIEIDNLMDHLPAPDFPTGG-IIYGYAGVYEAYHTGRGRVVMRAKMHE 248 Query: 248 ED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 E+ A+V++ LP+QV+ +R +E+IA ++R +++ + DLRDESD + R+VI + Sbjct: 249 EEVRSGRDALVVTELPYQVNKSREVERIADRVRQERIEGIADLRDESDRDG-LRIVIELK 307 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRL 362 + + V N ++ + L+ ++ +N+ + + GRP V L + + ++ R + V RR Sbjct: 308 QG-ANAEIVKNQVYKHSRLQDTFGVNM-VALVGGRPQVVTLKDAIRHYVDHRHEIVVRRT 365 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMS-RFG---------- 408 Y L + R HILEGL +A ++D VI IIR+ + + L + R+ Sbjct: 366 EYDLAQAQDRAHILEGLTLALDHLDAVIAIIRHSPDTGTARQNLRAGRYPDALSDDDLRT 425 Query: 409 --------------------------------------LTETQAEAILELKLRHLAKLEE 430 LTE QA AIL L+L L LE Sbjct: 426 INVPLTPPGEADEEQDTVQALLGDEYEELVQQPDEGDWLTEAQANAILRLRLSRLTGLER 485 Query: 431 MKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMS 490 KI GE ++ ++ + Q IL S + L+K+EL + + D+RR+ + + + Sbjct: 486 EKIIGEYEDIIEQIREYQRILNSRDRRMALIKEELLTVKERFDDERRTEI-DYTGGDDII 544 Query: 491 EHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNY--------KAGDSFKAAVKGKSNQP 542 D++ + V + ++ G + G + D + S+ Sbjct: 545 IEDLIERQHVVVTITNQGLTKRTPIDTYRTQGRGGVGMRGTGKREDDFIEHLYVCHSHDV 604 Query: 543 VVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLMESDD--------- 591 ++ G+ + + P +P +G + + + P V ++ S + Sbjct: 605 LLLFTDKGQCFWLRPFEIPEGGRTAKGRSIRQLIDIDPDDRVRAVISVSKENFEDEAFLN 664 Query: 592 -QKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAG 650 +L A+ G G I + E ++ + + ++ + G Sbjct: 665 SHYVLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEGDQLIEASL-TGGDNTVVVASSGG 723 Query: 651 RMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQST----LTIHVGKR 705 R + F D + + +G + + +P G+ L + +PP + Sbjct: 724 RAVHFDEGDARPMGRNTRGVRGMELP------GDQELVGMISVPPAMHDDLDVLAIAEHG 777 Query: 706 KIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K +V +GR G + L R DR + GD + Sbjct: 778 YGKRTALSDYRV---QGRGGKGLITLNRTDRTGALVSIKGVLGDED 820 Score = 74.9 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 87/231 (37%), Gaps = 22/231 (9%) Query: 474 DDR-RSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSA------KGHDIDAPGLNYK 526 DDR R+ + +E + L + + ++ G V+ + G+ Sbjct: 643 DDRVRAVISVSKE--NFEDEAFL-NSHYVLAATRQGQVKKTALEAYSRPRSNGIIGIKID 699 Query: 527 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDH 584 GD A + VV S GR+ AR G G + LP + Sbjct: 700 EGDQLIEASLTGGDNTVVVASSGGRAVH---FDEGDARPMGRNTRGVRGMELPGDQELVG 756 Query: 585 MLMES----DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIED-- 638 M+ DD +L ++ GYG +D + R GK LITL V I+ Sbjct: 757 MISVPPAMHDDLDVLAIAEHGYGKRTALSDYRVQGRGGKGLITLNRTDRTGALVSIKGVL 816 Query: 639 ASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQ 688 + L+ IT+ G M+ V ++ + + +G ++I++ +A +A Sbjct: 817 GDEDLMVITEGGIMIRTRVGEISTMGRNTQGVQVIDLKDGDAIADVTRVAD 867 >UniRef50_A0Q573 DNA topoisomerase IV subunit A n=34 Tax=Bacteria RepID=A0Q573_FRATN Length = 742 Score = 768 bits (1983), Expect = 0.0, Method: Composition-based stats. Identities = 375/744 (50%), Positives = 519/744 (69%), Gaps = 13/744 (1%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 S + ++ EF+E AYLNYSMYVI+DRALP I DGLKPVQRRI+YAMSE+GL+ +K+ Sbjct: 4 FSSLESTRSVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKY 63 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQ FSYRYP +DGQGNWG+ DDPKSFAAMRY Sbjct: 64 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRY 123 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TESRLSKY+ LLL EL +GT DW NFDGT+ EPK+LPA++PNILLNG GIAVGM+T I Sbjct: 124 TESRLSKYAVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYI 183 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHN+ E+ A + L+ +P +T++++L+IV+ PDYP A II+S+ EI +Y++G GS+R Sbjct: 184 PPHNITEIINACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIR 243 Query: 241 MRAVWKKED-GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 +AV++ ++ G VVI+ LPHQVS A V+EQIA +++ +K+ + +++DESD + P ++V+ Sbjct: 244 QQAVYEYDNHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVL 303 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 + + ++ ++M HL ATTDLEKS+R+N+NMIGLD RP VKNLL+IL+EWL +R+ T+R Sbjct: 304 YSATTKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLR 363 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILE 419 RRL L+KVL RLHILEGLL+AFLNIDEVI+IIRN D+P L +RF L+E QAEAIL Sbjct: 364 RRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILN 423 Query: 420 LKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSP 479 ++LR LAK+EE++I+ EQ EL+KER+ L+G L SE K NL+KKE + +GD RRS Sbjct: 424 IRLRKLAKIEEIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQILTDFGDSRRSK 483 Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKS 539 + E+A+A+ E D++PSE VTI+LS+ GW+R AKG +ID GL+YK D G S Sbjct: 484 IIVAEKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTGNS 543 Query: 540 NQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASD 599 N +VF G++Y++ LPSARG GE +T + L + + + L+AS+ Sbjct: 544 NIKLVFFSKLGKAYSMYVDKLPSARGYGEHITTYIPLDKQDQIISIAFVNAAGYFLIASE 603 Query: 600 AGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD 659 +G FV DL+ GK + + V + D +LAI+ GR+++ + Sbjct: 604 SGKAFVIPAEDLITNKITGKNIF---DADDVFKFMPF-DQDHKMLAISSQGRVIIRDFAS 659 Query: 660 LPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTG 719 L KGKG II + +D L + + LT++ GKR I++ + ++ Sbjct: 660 FALLKKGKGKSIIRLDK------KDKLKFIELFRANQELTLNAGKRFIRIDSKNIETYYS 713 Query: 720 ERGRRGT--LMRGLQRIDRVEIDS 741 ++ G L +G ++I +++I++ Sbjct: 714 DKPSGGGVLLPQGFRKITKIDIET 737 >UniRef50_Q1RID9 DNA gyrase subunit A n=218 Tax=Bacteria RepID=GYRA_RICBR Length = 905 Score = 766 bits (1979), Expect = 0.0, Method: Composition-based stats. Identities = 242/760 (31%), Positives = 404/760 (53%), Gaps = 61/760 (8%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 + + + + +YL+Y+M VI+ RA+P + DGLKPV RRI+Y+M E G +A+ ++KSAR V Sbjct: 12 VNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHANRAYRKSARIV 71 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 GDV+GKYHPHGDSA Y+++V MAQ FS R PLVDGQGN+G+ D + AAMRYTESR++K Sbjct: 72 GDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSLDG-DAAAAMRYTESRMAK 130 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 + L+ ++ + T + PN+DG+ +EP +LP+ PN+L+NG+ GIAVGMAT+IPPHNL E Sbjct: 131 VAHKLIEDIDKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSGGIAVGMATNIPPHNLGE 190 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 V A +D + LL++V+GPD+PT II I+ Y GRGS+ +R + Sbjct: 191 VIDACCLYVDNNDIEILDLLEVVKGPDFPTSG-IILGVNGIKSAYLTGRGSIAIRGRAEI 249 Query: 248 ED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 E+ A++I+ +P+ V+ AR++E+IA ++ K++ + DLRDES+ R+ I + Sbjct: 250 ENLGNGRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNG-IRIYIELK 308 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRL 362 + V + V+N +++ T L+ S+ + + + DG P V NL E+++ ++ FR + R Sbjct: 309 KDIV-AEVVLNQIYSCTQLQTSFGVIMLALK-DGLPKVMNLKEVIAAFVSFREVVITNRT 366 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP---KPALMSR------------- 406 Y L K + HIL GL +A NIDE+I II+ +P K LM+R Sbjct: 367 IYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMARSWDALNILPLVKL 426 Query: 407 ------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASE 454 TE QA+AILE++L+ L +E+ K+ + L E + IL S Sbjct: 427 VDDKAMLNEEGKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYLNILGSR 486 Query: 455 RKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS-- 512 ++ +LK+EL + + R + ++ E + + D++ E + + ++ G+++ Sbjct: 487 ERLLEILKEELIKVKEEFATPRLTSIEFGEFDQDI--EDLIQREEMVVTVTLGGYIKRVP 544 Query: 513 ------AKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR-- 564 K GL+ + D G ++ P++F + G+ Y++ LP + Sbjct: 545 LSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKLPLSNPQ 604 Query: 565 GQGEPLTGKLTLPPGATVDHMLM------ESDDQKLLMASDAGYGFVCTFNDLVARNRAG 618 G+G P+ L L + +++ E D+ ++ A+ G D G Sbjct: 605 GKGRPMVNILPLKGDEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFKKIQSNG 664 Query: 619 KALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQL--SKGKGNKIINIPS 676 K I L E+ ++ + + +L T++G+ L FPV L + G + + + Sbjct: 665 KIAIRLDEDDKLIDVKPCK-EDEHILLATKSGKALRFPVESLRVIKSRTSDGVRGMRLAE 723 Query: 677 AEAARGEDGLAQLYVLPPQ--STLTIHVGKRKIKLRPEEL 714 ++ L + + + L++ KR + EE Sbjct: 724 DDSVISMTVLKGIKATREERDAYLSVSWEKRLEIAKGEEF 763 Score = 60.3 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 33/273 (12%), Positives = 81/273 (29%), Gaps = 65/273 (23%) Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVL-SQMGWVRSAKGHDIDAPGLNYK----- 526 GD+ + + E + + + I+ + G +R + D N K Sbjct: 618 GDEHITNIMPLPENQD-------EWDNLNIMFATAKGNIRRSDLLDFKKIQSNGKIAIRL 670 Query: 527 -AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPIT---LPSARGQGE---------PLTGK 573 D K ++ ++ +G++ + + S G + Sbjct: 671 DEDDKLIDVKPCKEDEHILLATKSGKALRFPVESLRVIKSRTSDGVRGMRLAEDDSVISM 730 Query: 574 ------------------------LTLPPGATVDH------------MLMESDDQKLLMA 597 L + G + + M + ++ +L Sbjct: 731 TVLKGIKATREERDAYLSVSWEKRLEIAKGEEFNSEELGVDLTAESILEMANSEEFILTV 790 Query: 598 SDAGYGFVCTFNDLVARNRAGKALITLPENAH--VMPPVVIEDASDMLLAITQAGRMLMF 655 ++ G+G + +R G +I + N ++ V+ D L+ IT +G+++ Sbjct: 791 TENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVKMDDELMLITNSGKLIRC 850 Query: 656 PVSDLPQLSK-GKGNKIINIPSAEAARGEDGLA 687 + + + G + + E +A Sbjct: 851 KLETVRITGRNTSGVTLFRLDDGEKVVSASLIA 883 >UniRef50_D0LNR4 DNA gyrase, A subunit n=3 Tax=Bacteria RepID=D0LNR4_HALO1 Length = 891 Score = 765 bits (1977), Expect = 0.0, Method: Composition-based stats. Identities = 262/808 (32%), Positives = 407/808 (50%), Gaps = 79/808 (9%) Query: 1 MSDMA--ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASA 58 MSD+A +A+ + +++++Y+M VI+ RALP DGLKPV RRI++A L + Sbjct: 1 MSDIANVTPVAIEKEMRSSFMDYAMSVIISRALPDARDGLKPVHRRILFAQKGLSNYWNR 60 Query: 59 KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 118 + K AR VGDV+GKYHPHGDS+ Y+A+V MAQ FS RY LVDGQGN+G+ D AAM Sbjct: 61 PYLKCARIVGDVIGKYHPHGDSSVYDALVRMAQDFSMRYELVDGQGNFGSIDGDPP-AAM 119 Query: 119 RYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMAT 178 RYTE R+++ + LL++L + T DW PN+D EP +LP ++PN+LLNG +GIAVGMAT Sbjct: 120 RYTECRMARLASDLLADLDKETVDWQPNYDDKELEPTVLPTKVPNLLLNGASGIAVGMAT 179 Query: 179 DIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGS 238 +IPPHNL E+ A +AL++ P ++L +IV GPD+PT II R IR + GRG+ Sbjct: 180 NIPPHNLGEILDATMALMEDPDLPEEELAEIVPGPDFPTG-GIIHGRGGIRAAHTLGRGA 238 Query: 239 VRMRAV-----WKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHEN 293 V +R +KE A+V++ +P V+ +R +E A +R+K++ + D+RDESD + Sbjct: 239 VVIRGRTQFETVRKERKAIVVTEMPFMVNKSRWIETTAHLVRDKRIDGISDIRDESDRKG 298 Query: 294 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVF 353 R+V + + + V+N+LF T L+ S+ +N+ I +DGRP V +L L ++ Sbjct: 299 -IRVVFELKRD-ANEQVVLNNLFKMTALQTSFNVNMLAI-VDGRPQVLSLRSALQVFIEH 355 Query: 354 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSR---- 406 RR VRRR + L + +R I+EGL +A + ID VIEIIR + DE K LMS Sbjct: 356 RRTVVRRRCLFELRQARERREIVEGLGLAVMQIDRVIEIIRTSKDTDEAKARLMSERMMG 415 Query: 407 -----------------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKE 443 L+ QA+AIL+++L L LE K+ E EL + Sbjct: 416 LDGFLERAGRPADEVEAVRTAGFVHLSARQAQAILDMRLGRLTGLEREKVEAEYRELWEI 475 Query: 444 RDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIV 503 D L+GIL + K+ ++ EL+ Y D RR+ + ++E + + ++ E + + Sbjct: 476 TDYLEGILGDDVKLRGVIVDELREMRDQYADPRRTEIVDQE--GEILDEQLIKVEDMVVT 533 Query: 504 LSQMGWVRSAKGHDIDAPGLNYK--------AGDSFKAAVKGKSNQPVVFVDSTGRSYAI 555 ++ G+V+ + A G K D ++ ++ + GR Y Sbjct: 534 RTRRGYVKRTALDEYSAQGRGGKGVRGAASGDDDFVADMFVASTHDHLLMFTNIGRVYQK 593 Query: 556 DPITLPSAR--GQGEPLTGKLT-LPPGATVDHMLMES---DDQKLLMASDAGYGFVCTFN 609 LPS +G P + L P V ML DD MA+ G Sbjct: 594 KVYELPSGSRISKGRPFVNVIEALQPDEYVVGMLPVKEFTDDLSAFMATRMGTVKKTVAA 653 Query: 610 DLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKG 668 G I + + ++ + D +L +T+ G+ + F + + + +G Sbjct: 654 AFSRIRVTGIKAIGIDDGDELVEVRLTRPDMD-VLLVTKRGQSIRFQEDQVRPMGREARG 712 Query: 669 NKIINIPSAEAARGEDGLAQLYVLP---PQSTLTIH---VGKRKIKLRPEELQKVTGERG 722 + I + G D + + V + LT+ GKR + L + + G Sbjct: 713 VRGIGL------AGGDAVVGMSVFERDCEDAILTVCENGYGKRTL------LSAYSTQ-G 759 Query: 723 RRGTLMRGLQRIDRVEIDSPRRASSGDS 750 R G + ++ +R S R D Sbjct: 760 RGGKGLITIKTTERNGPVSGVRLVGEDD 787 Score = 74.9 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 74/196 (37%), Gaps = 16/196 (8%) Query: 505 SQMGWVRSA------KGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPI 558 ++MG V+ + + GD + + V+ V G+S Sbjct: 642 TRMGTVKKTVAAAFSRIRVTGIKAIGIDDGDELVEVRLTRPDMDVLLVTKRGQSIRFQED 701 Query: 559 TLPSARGQGEPLTGK--LTLPPGATVDHMLMESDDQKLLMAS--DAGYGFVCTFNDLVAR 614 + R G G + L G V M + D + + + + GYG + + Sbjct: 702 QV---RPMGREARGVRGIGLAGGDAVVGMSVFERDCEDAILTVCENGYGKRTLLSAYSTQ 758 Query: 615 NRAGKALITLP--ENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKG-KGNKI 671 R GK LIT+ E + V + D ++ I+ G+++ V D+P S+ +G ++ Sbjct: 759 GRGGKGLITIKTTERNGPVSGVRLVGEDDHVIMISSTGKLIRMRVRDIPVQSRATQGVRL 818 Query: 672 INIPSAEAARGEDGLA 687 + + E + LA Sbjct: 819 MRLDPGEQVASLERLA 834 >UniRef50_D1AVF2 DNA gyrase, A subunit n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AVF2_STRM9 Length = 870 Score = 765 bits (1975), Expect = 0.0, Method: Composition-based stats. Identities = 261/769 (33%), Positives = 420/769 (54%), Gaps = 41/769 (5%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 MS+ E + + + + +YL+YSM VI+ RALP + DGLKPV RRI+YAM EL +N ++ + Sbjct: 37 MSN-EELIYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILYAMDELKMNHNSPY 95 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VG+VLGKYHPHGDSA Y +MV MAQ F+ RY LVDG GN+G+ D S AAMRY Sbjct: 96 KKSARLVGEVLGKYHPHGDSAVYNSMVRMAQDFNTRYMLVDGHGNFGSIDG-DSAAAMRY 154 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+R+SK +E +L ++ + T DW NFD +L EP +LPARLPN+LLNGTTGIAVGMAT+I Sbjct: 155 TEARMSKIAEEMLIDINKDTIDWRKNFDESLDEPTVLPARLPNLLLNGTTGIAVGMATNI 214 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL E++ IALID ++D+L+ ++GPD+PT II ++ I Y+ GRG VR Sbjct: 215 PPHNLGELSDGIIALIDNRDISIDELITHIKGPDFPTGG-IIYGKSGIYSAYKTGRGKVR 273 Query: 241 MRAVWKK-----EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 + A + ++VI+ LP+QV+ A ++++I +++K + + DL D S+ E Sbjct: 274 VSAKTEIITDKKGRQSIVITELPYQVNKANLIKRIGELVKDKIIVGISDLADLSNLEGIR 333 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 ++ + + + + V+N L TDL+ ++ I + + ++ P + NL EIL ++L R Sbjct: 334 IVIDIKKGE--EAEIVLNKLLKFTDLQTTFGIIM-LALVNNAPKILNLKEILEKYLEHRY 390 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTET 412 D + R+ + L K R HILEGL A +IDE+I IIR K +L+++F TE Sbjct: 391 DVITRKTIFDLNKAKDRAHILEGLRKALDHIDEIISIIRGSKTRALAKESLIAKFEFTEI 450 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 Q +AIL+++L L L +I E +L L+ ILA + + ++K+E+ Q Y Sbjct: 451 QTDAILDMRLHRLTGLAREEIDTEYDKLMLFITDLEDILAKDERKYAIIKEEVLELKQKY 510 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK------ 526 GD RR+ ++ + ++ D++ +E V + +++ G+ + A K Sbjct: 511 GDARRTSIEN--DRYEINIEDLIKNEDVIVTITKRGYAKRMSLDSYKAQKRGGKGVSNTT 568 Query: 527 --AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATV 582 D K K+ ++ G+ Y+I +P S + +G+ + + L + Sbjct: 569 TIEDDVLKDLFTAKTLDTLMVFSDKGKVYSIKVYEIPEVSKQARGKLIGNIIELDENEKI 628 Query: 583 DHML----MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIED 638 ++ +E+D++ L+ + G ++ NR GK I+ ++ + V I Sbjct: 629 SVIIPVDEIENDNRDLIFITRNGIAKKTKISEFKTINRNGKIAISFKDDEDEVKFVGITS 688 Query: 639 AS--DMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQ 695 S D + T+ G + F D+ + + G + I + S + D + + Sbjct: 689 GSEKDEIFISTKGGMAVRFKEEDIRSMGRTAAGVRAIKLNSNDEVVSADVIYTDNNVDEM 748 Query: 696 STLTIHV---GKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDS 741 S L++ GK+ + L + K RG +G L+R + E + Sbjct: 749 SVLSVTSLGIGKKTL-LSEYNIIK----RGGKGVKNYNLERRSKEESEH 792 Score = 63.0 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 82/241 (34%), Gaps = 33/241 (13%) Query: 479 PLQEREEAKAMSEHDMLPSEPV-TIVLSQMGWVRSAKGHDIDAPGLNYK-------AGDS 530 L E E+ + D + ++ I +++ G + K + N K D Sbjct: 621 ELDENEKISVIIPVDEIENDNRDLIFITRNGIAKKTKISEFKTINRNGKIAISFKDDEDE 680 Query: 531 FKAAVKGKSNQPV-VFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLM 587 K ++ +F+ + G R G G + L V + Sbjct: 681 VKFVGITSGSEKDEIFISTKGGMAVR--FKEEDIRSMGRTAAGVRAIKLNSNDEVVSADV 738 Query: 588 -----ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP---------ENAHVMPP 633 D+ +L + G G ++ R GK + E+ +V+ Sbjct: 739 IYTDNNVDEMSVLSVTSLGIGKKTLLSEYNIIKRGGKGVKNYNLERRSKEESEHHYVVYS 798 Query: 634 VVIEDASD-----MLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLA 687 +I+ + + L+AI+ G ++ + DLP + + KG KI ++ E D +A Sbjct: 799 TIIDPSDENSENMELVAISTTGTVIRIKIKDLPVVGRNSKGVKIQSLKYKEYLVSADRVA 858 Query: 688 Q 688 Sbjct: 859 A 859 >UniRef50_P47719 DNA gyrase subunit A n=26 Tax=Bacteria RepID=GYRA_MYCGA Length = 846 Score = 764 bits (1973), Expect = 0.0, Method: Composition-based stats. Identities = 229/768 (29%), Positives = 406/768 (52%), Gaps = 34/768 (4%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + + ++ + E +++ Y+M VI+ RALP DGLKPV RR++Y GL ++KS Sbjct: 17 VVKEASITKELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKS 76 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 A+ VG V+GKYHPH DSA YE MV MAQPFS RY L+DG GN+G+ D S AAMRYTE+ Sbjct: 77 AQIVGHVMGKYHPHSDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDG-DSAAAMRYTEA 135 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 RLSK S +L + + T D+V N+D + QEP +LP+ PN+L NG++GIAVGMAT+IPPH Sbjct: 136 RLSKISAEMLRNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANGSSGIAVGMATNIPPH 195 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL E+ L+ T+++L + ++GPD+PT AEI+ I + + GRGSV +RA Sbjct: 196 NLSELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEIL-GETGINEYFNTGRGSVSVRA 254 Query: 244 VWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + E+ +VI+ +P+ V+ A ++ +IA ++ +++ + DLRDES+ E R+V Sbjct: 255 KSEIEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIADLRDESNREG-IRIV 313 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 I + + + + ++N L+ +T L+ ++ + + + ++ +P V NL E L ++ + D + Sbjct: 314 IETKRDVI-PEVLLNQLYKSTQLQTNFSVAM-LALVNNQPKVLNLKEALQIYIDHQFDIL 371 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQAE 415 R+ N+ L+K HI+EGL++A NID+VIE I+N ++ K LM+++ L++ QA+ Sbjct: 372 LRKTNFELKKAKASAHIVEGLVIATNNIDDVIETIKNAKDNEDAKNTLMTKYELSDLQAK 431 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 AIL+++LR L+ LE ++ E ++L++ L+ IL ++ + ++ +L +GD+ Sbjct: 432 AILDMRLRSLSGLERENLQKELAKLKELIKDLEEILQNKERRIKIISDQLDEIDHKFGDE 491 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS--------AKGHDIDAPGLNYKA 527 RR+ + + + ++P E V I S G+++ + G+N Sbjct: 492 RRTKICYGLNST-IDNEQLIPVETVVITRSSKGYLKRIPISAYKVQHRGGVGVKGMNTYE 550 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHM 585 D ++ + ++ ++F + G+ Y I +P S +G P +++ + + Sbjct: 551 DDDVESLIVCSTHSDLLFFTNYGKVYRIRAHQVPLGSRISKGIPAINLISIEKDEKLMSL 610 Query: 586 LMESDDQ--KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDML 643 L +D ++ G ++ GK I L EN + + ++ Sbjct: 611 LSINDYDSGYFFFSTKKGLVKRVKASEFSRIQNNGKIAIKLTENDSLFKVIKTAGDEEIY 670 Query: 644 LAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVG 703 + ++ G ++ F + + + + + D + L S L Sbjct: 671 IGVSS-GLLVRFKEDVVRSMGRT----AQGVIGVKFKNPNDEVIGLSSSHEGSLLLAVCE 725 Query: 704 KRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K K+ E ++T RG +G + ++ + + +G+ E Sbjct: 726 KGVGKMTDREEYRMT-NRGSKGVI--TIKVTPKTGNIINTQLVNGNEE 770 Score = 64.5 bits (156), Expect = 2e-08, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 69/189 (36%), Gaps = 15/189 (7%) Query: 505 SQMGWVRSAKGHDIDAPGLNYK------AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPI 558 ++ G V+ K + N K DS +K ++ + S+G Sbjct: 625 TKKGLVKRVKASEFSRIQNNGKIAIKLTENDSLFKVIKTAGDEEIYIGVSSGLLVRFKED 684 Query: 559 TLPSARGQGEPLTGKLTLP---PGATVDHMLMESDDQKLLMASDAGYGFVCTFND--LVA 613 + R G G + + P V + + LL + G G + + + Sbjct: 685 VV---RSMGRTAQGVIGVKFKNPNDEVIGLSSSHEGSLLLAVCEKGVGKMTDREEYRMTN 741 Query: 614 RNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKII 672 R G I + + + + ++ LL I+ G+++ P++++ + + G K+I Sbjct: 742 RGSKGVITIKVTPKTGNIINTQLVNGNEELLMISSTGKIVRVPLAEVSEQGRNTSGVKLI 801 Query: 673 NIPSAEAAR 681 ++ E + Sbjct: 802 SLNEKETLQ 810 >UniRef50_C6XHT3 DNA topoisomerase IV subunit A n=27 Tax=Alphaproteobacteria RepID=C6XHT3_LIBAP Length = 753 Score = 763 bits (1971), Expect = 0.0, Method: Composition-based stats. Identities = 270/742 (36%), Positives = 442/742 (59%), Gaps = 25/742 (3%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 + ++L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKKSA Sbjct: 17 VKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKKSA 76 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 R VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE+R Sbjct: 77 RIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTEAR 135 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 +++ +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP HN Sbjct: 136 MTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPSHN 195 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 ++E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+RA Sbjct: 196 VQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVRAR 255 Query: 245 WKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 W E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+V+ Sbjct: 256 WCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRIVL 313 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 P++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ + Sbjct: 314 FPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREVLF 373 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILE 419 RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AIL Sbjct: 374 RRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAILN 433 Query: 420 LKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD---- 475 L+LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + Sbjct: 434 LRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTDLG 493 Query: 476 -RRSPLQE-REEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKA 533 RR+ E KA + M+ EP+T+V+S GW+RS K H +D L++K GDS K Sbjct: 494 RRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSLKI 553 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQK 593 A+ + ++ + + G++Y + L S RG GE + + L + + K Sbjct: 554 ALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDSTCK 613 Query: 594 LLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRML 653 LL+ S G F+ ++++A R GK + + + V + D + + + ++L Sbjct: 614 LLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRKLL 671 Query: 654 MFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT-IHVGKRKIKLRPE 712 +F + +P++S+GKG ++ + G++ + LT I R Sbjct: 672 IFSIDQIPEMSRGKGVRLQSYKDG-------GISDVICFKICEGLTWIDSAGRSYNRSEN 724 Query: 713 ELQKVTGERGRRGTL-MRGLQR 733 +L G+RG G+L +G R Sbjct: 725 DLLGWLGKRGGVGSLVPKGFPR 746 >UniRef50_C6CYI7 DNA gyrase, A subunit n=9 Tax=Bacillales RepID=C6CYI7_PAESJ Length = 817 Score = 760 bits (1962), Expect = 0.0, Method: Composition-based stats. Identities = 227/749 (30%), Positives = 390/749 (52%), Gaps = 32/749 (4%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 L E + + YS Y+I DRA+P + DGLKPVQRRI+YAM + ++KSA+TVGD Sbjct: 12 LEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSNNTPDKPYRKSAKTVGD 71 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 V+G YHPHGDS+ YE MV MAQP+ + L+DG GNWG+ DD AAMRYTE+RLS + Sbjct: 72 VMGNYHPHGDSSIYEGMVRMAQPWKMGHVLIDGHGNWGSMDDDP-AAAMRYTEARLSPIA 130 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 +L ++ + T + NFD T +EP +LP+R PN+L+NGT+GI+ G AT+IPPH+LRE Sbjct: 131 MEILRDIDKRTVQFKDNFDNTTKEPVVLPSRYPNLLVNGTSGISAGFATEIPPHSLRETI 190 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED 249 A IA++ +P+ T+++L+ IV+GPD+PT II IR+ Y G+G + +R+ + ED Sbjct: 191 DACIAVMARPEMTVEELMGIVKGPDFPTGG-IIMGEEGIREAYTTGKGRIYIRSKVEIED 249 Query: 250 -----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 + I+ +P+QV +R++ + KK+ + ++RDES +V + + Sbjct: 250 VRGGRQQITITEIPYQVVKSRLVSAMENIRLEKKVEGISEVRDESGRNGLRIVVELKK-- 307 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 364 D + ++ +L TDL+ +Y N+ I ++ P + +IL+ ++ +++ V R Y Sbjct: 308 EADANGILAYLLKKTDLQVTYNFNMVAI-VNKAPQQLGIKQILNAYINHQKEVVTHRTQY 366 Query: 365 RLEKVLKRLHILEGLLVAFLNIDEVIEII---RNEDEPKPALMSRFGLTETQAEAILELK 421 LEK +R H++EGL+ A +DEVI I +N + + L++++G +E QA+AIL L+ Sbjct: 367 ELEKAEERAHVVEGLVKALNILDEVIATIKASKNRADAQNNLVAKYGFSERQADAILTLQ 426 Query: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQ 481 L L LE + E E +K+ L+ IL SE+K+ ++K EL + YG DRRS ++ Sbjct: 427 LYRLTNLEITSLEKEWKETQKKIAYLRSILESEKKLLGVIKDELTEIREKYGIDRRSSIR 486 Query: 482 EREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAK-----GHDIDAPGLNYKAGDSFKAAVK 536 E ++ M+ SE V + LS+ G+++ D K GD+ + + Sbjct: 487 GEVEELKVNLEVMVQSEDVIVTLSEEGYMKRTSMLSFTRSGGDLQTAGVKEGDAISSVYE 546 Query: 537 GKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLMESD---- 590 + ++ G+ Y + +P + + G + + +P ++ ++ D Sbjct: 547 VNTIDNLLLFTRKGQYYMLPVHQIPEFKWKDTGTAVVNIVPIPKDDSIVAIIPVKDFNLP 606 Query: 591 DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAG 650 L+ + + + A + E V+ V + + + LL +++ G Sbjct: 607 GASLVFVTKRAQVKRTELKEYMTTRSTAIAAAKVAEGDEVIR-VTLSEGTKQLLLVSKLG 665 Query: 651 RMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKL 709 + F ++ + + G + + + + + +A +V + + + K Sbjct: 666 MSIRFSEQEVNAMGRVAAGVRGMQLREDD-----ELIAAEWVADDEGEVLVVTDLGYAKR 720 Query: 710 RPEELQKVTGERGRRGTLMRGLQRIDRVE 738 + G RG +G + RV+ Sbjct: 721 TLLLDYPLQG-RGGKGVQTFEFKEGKRVK 748 >UniRef50_P57277 DNA gyrase subunit A n=76 Tax=Proteobacteria RepID=GYRA_BUCAI Length = 830 Score = 760 bits (1962), Expect = 0.0, Method: Composition-based stats. Identities = 256/764 (33%), Positives = 416/764 (54%), Gaps = 53/764 (6%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 S ++ + E +++YL+YSM VI+ RALP + DGLKPV RRI++AM L + + +K Sbjct: 5 SREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYK 64 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VGDV+GKYHPHGDSA Y+A+V MAQ FS RY L+DGQGN+G+ D S AAMRYT Sbjct: 65 KSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDG-DSAAAMRYT 123 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E R+SK + LL++L + T +++PN+DGT P++LPA++PN+L+NG++GIAVGMAT+IP Sbjct: 124 EVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIP 183 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNL EV +A ID TL++L+ + GPD+PT A II ++ I + Y G+G + + Sbjct: 184 PHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAA-IINGKSGIEEAYRTGKGKIYI 242 Query: 242 RAVWKK------EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 RA + + ++V + +P+QV+ +R++E+IA ++ K++ + LRDESD + Sbjct: 243 RAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDG-M 301 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 R+VI + + + ++N L++ T L+ S+ IN+ + G+P +L EIL +L R+ Sbjct: 302 RIVIEIKREAI-AEVILNQLYSLTQLQISFGINMVALC-QGQPKTLSLKEILKNFLSHRQ 359 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLN--------------ID-EVIEIIRNEDEPK 400 + + RR + L KV R+HILEGL +A +N ID + I I +N K Sbjct: 360 EIIIRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEK 419 Query: 401 PALMSR---FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKM 457 +++ + +E QA+AIL+L+L + LE+ KI E ++L K+ +L+ IL + +KM Sbjct: 420 INYLAKKHEYYFSEKQAQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENPKKM 479 Query: 458 NNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHD 517 ++K EL + + D RR+ + E ++ D++ E V + LS G+V+ D Sbjct: 480 FEVIKSELLSIQNNFSDKRRTKITENHS--DINMEDLINQEDVVVTLSHSGYVKYQPLSD 537 Query: 518 IDAPG--------LNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQG 567 +A K D ++ V ++ ++ S G Y + LP S +G Sbjct: 538 YNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPESSRHARG 597 Query: 568 EPLTGKLTLPPGATVDHMLM---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL 624 P+ L L P + +L D+ + M + G + + AG I L Sbjct: 598 RPIVNLLPLSPKERITAILPVHKYQDNLNIFMTTAHGIVKKSSLSQFKKPRFAGIIAINL 657 Query: 625 PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGE 683 N ++ V + D ++ ++ TQ G+++ F + + + + G K I I Sbjct: 658 HANDELIG-VALTDGNNNIMLFTQNGKVVQFLENSVRTMGRTASGVKGIKIKK------N 710 Query: 684 DGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTL 727 D + L V + ++ I K + R +G + Sbjct: 711 DKVVSLIVPKNKGSILIATKNGYGKRTKISDFPIK-SRATQGVI 753 Score = 74.9 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 67/185 (36%), Gaps = 10/185 (5%) Query: 513 AKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTG 572 K +N A D N ++ G+ S R G +G Sbjct: 645 KKPRFAGIIAINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLEN---SVRTMGRTASG 701 Query: 573 K--LTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRA--GKALITL-PEN 627 + + V +++ + +L+A+ GYG +D ++RA G I + +N Sbjct: 702 VKGIKIKKNDKVVSLIVPKNKGSILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKN 761 Query: 628 AHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGL 686 ++ + + D ++ IT AG ++ VS++ L + +G +I E + Sbjct: 762 GKIIGAIQVI-EKDQIMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKI 820 Query: 687 AQLYV 691 + Sbjct: 821 VDPMI 825 >UniRef50_B8FW91 DNA gyrase, A subunit n=2 Tax=Desulfitobacterium hafniense RepID=B8FW91_DESHD Length = 808 Score = 759 bits (1961), Expect = 0.0, Method: Composition-based stats. Identities = 253/744 (34%), Positives = 394/744 (52%), Gaps = 27/744 (3%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 + +L E +YL YS +VI+ RA+P + DGLKPV RRI+YAM ELG+ + KSA Sbjct: 8 ITQRSLEEVLPESYLGYSKHVILQRAVPDVRDGLKPVHRRIIYAMDELGMTPDKPYSKSA 67 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 R VGD +GKYHPHGDS+ Y+A V MAQP++ RYPL+DGQGN+G+ D AAMRYTE R Sbjct: 68 RLVGDCMGKYHPHGDSSIYDAAVRMAQPWATRYPLIDGQGNFGSIDGDG-AAAMRYTEMR 126 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 ++ S+L+ ++ + + PN+D +EP +LP+ PN+L+NG +GIAVGMA++IPPHN Sbjct: 127 MTHLSQLMTQDIEKDVIPFKPNYDQREKEPIVLPSPFPNLLVNGGSGIAVGMASNIPPHN 186 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 LREV A I ID P TL+QL++ V+GPD+PT II S+ + Y +GRG V MR Sbjct: 187 LREVVAALILQIDNPHVTLEQLMEKVKGPDFPTGGLIIGSQ-GFTEAYRSGRGKVTMRGK 245 Query: 245 WKKEDGA-----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 E G +VI+ +P QVS + + +I AQ N K+ + ++RDESD E +V Sbjct: 246 AIIESGKNGKSLIVITEIPFQVSKSTLAAKIEAQSENGKIEGISEVRDESDREGIRLVVE 305 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 + D +++ L+ T L++++ I +I +G P V L EI +L RR+ V Sbjct: 306 CKK--DADPKRILKLLYKYTQLQETFGIINLVISEEGTPRVLGLKEINHSYLQHRREVVL 363 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP---KPALMSRFGLTETQAEA 416 RR Y L K R HILEGL++A N+DEV++IIR+ P K L++RF +E QA+A Sbjct: 364 RRTEYELAKAKARAHILEGLVIAINNLDEVLQIIRSSKTPALAKAGLITRFEFSEVQAQA 423 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDR 476 IL++KL+HL LE IR E +E+ K +L+ ILA K+ ++K EL+ A YGD+R Sbjct: 424 ILDMKLQHLTNLELDGIRKEYAEILKLIAELESILADINKVYTIIKNELKQIADQYGDER 483 Query: 477 RSPLQEREEAKAMSEHDM-LPSEPVTIVLSQMGWVRS----AKGHDIDAPGLNYKAGDSF 531 R+ + + + P +P+ ++L++ G+++ + I+A +K GD Sbjct: 484 RTLILPEDVGDEVDYSAFEEPEKPMEVLLTRKGFIKQIPTPTRRSQINAIAFAFKDGDVL 543 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPS--ARGQGEPLTGKLTLPPGATVDHMLM-- 587 V S + F +G+ Y + A+ +G + LP + M+ Sbjct: 544 LEHVSCTSKDTLYFFTHSGKYYDAKAKLVAEAGAKEKGRAVNNLFPLPEEERIVAMVSLR 603 Query: 588 -ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI 646 E + Q + + G D + A + L E ++ + + L Sbjct: 604 EEKEGQYFVFVTKDGQVMRSPVKDFLNARTA--EAMGLKEQDEIVKVFLSAGEGE-LFLA 660 Query: 647 TQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKR 705 + G+ + F +++ + + +G K + + + + +T+ Sbjct: 661 SLQGQAIRFAEAEVNPMGRKSRGVKGMTLNEGDYVVDALLIQPGADGETGDLITVTEQG- 719 Query: 706 KIKLRPEELQKVTGERGRRGTLMR 729 +K E K G GR + + Sbjct: 720 YVKRTSLEEYKPQGRAGRGIAIAK 743 Score = 49.1 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 33/228 (14%), Positives = 73/228 (32%), Gaps = 33/228 (14%) Query: 483 REEAKAMSEHDMLPSEP--VTIVLSQMGWVRSAKGHDI----DAPGLNYKAGDSFKAAVK 536 EE + ++ + + + +++ G V + D A + K D Sbjct: 591 PEEERIVAMVSLREEKEGQYFVFVTKDGQVMRSPVKDFLNARTAEAMGLKEQDEIVKVFL 650 Query: 537 GKSNQPVVFVDSTGRSYAIDPITL-P-SARGQGEPLTGKLTLPPGATVDHMLME-----S 589 + G++ + P + +G +TL G V L+ Sbjct: 651 SAGEGELFLASLQGQAIRFAEAEVNPMGRKSRG---VKGMTLNEGDYVVDALLIQPGADG 707 Query: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAH----VMPPVVIEDASDMLLA 645 + L+ ++ GY + + + RAG+ + +A ++ + + D LL Sbjct: 708 ETGDLITVTEQGYVKRTSLEEYKPQGRAGRGIAIAKIDAEKTGYLVSLIQVGPKEDKLLH 767 Query: 646 ITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLP 693 I QAG + G + ++ + GL + + Sbjct: 768 IIQAGGAV-------------TGVEAQSLKRESRVKSGAGLVNVIIND 802 >UniRef50_Q2NAD1 Type IIA topoisomeraseA subunit n=30 Tax=Alphaproteobacteria RepID=Q2NAD1_ERYLH Length = 931 Score = 759 bits (1959), Expect = 0.0, Method: Composition-based stats. Identities = 232/736 (31%), Positives = 374/736 (50%), Gaps = 63/736 (8%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 ER+ + + + +YL+Y+M VI+ RALP + DGLKPV RRI++A E G A ++KSA+ Sbjct: 5 ERIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASKEGGFVAGRPYRKSAK 64 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 VGDV+G YHPHGDSA Y+A+ M Q +S R PL+DGQGN+G+ DP A+MRYTE+RL Sbjct: 65 IVGDVMGNYHPHGDSAIYDALARMTQDWSLRVPLIDGQGNFGS-MDPDPPASMRYTEARL 123 Query: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 +K + LL +L + T D+ N+DG+L+EP++LPAR PN+L+NG GIAVGMAT++PPHNL Sbjct: 124 AKVANALLDDLDKDTVDFSDNYDGSLKEPQVLPARFPNLLVNGAGGIAVGMATNVPPHNL 183 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245 EV +A I P T ++L+ + GPD+PT I+ +A R Y GRGSV MRA Sbjct: 184 GEVIDGCLAFIANPAITSEELMQYIPGPDFPTAPLIL-GQAGARAAYTTGRGSVLMRARH 242 Query: 246 KKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 + E+ ++V +++P+QV + ++E+IA + K++ + D+RDES E +V + Sbjct: 243 EIEEKRGDRKSIVFTSIPYQVGKSGLVEKIADAAKEKRIEGISDIRDESSREGVRVVVDL 302 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360 R + V+N ++ T + S+ N+ I GRP V L +I+ ++ FR + + R Sbjct: 303 KR--DASPEVVLNQIWRYTPAQASFPANMLAIK-GGRPEVLTLRDIVQAFVSFREEVITR 359 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA------------------ 402 R + L K +R H+L GL+VA N+DEV+ +IR P+ A Sbjct: 360 RTKFELNKARERAHVLLGLVVAVSNLDEVVAMIRGSSNPQIAREKLRAKLWPIGDIAQYI 419 Query: 403 -LMS-----------RFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450 L+ + L+E Q +AIL+L+L L L +I E EL E ++ I Sbjct: 420 QLIEAIEPTADQEGGTYQLSERQVKAILDLRLHRLTALGRDEIGDELKELASEIEEYLSI 479 Query: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510 LA K+ +L+ EL Y R S + + + D++ E + + ++ G++ Sbjct: 480 LADRGKLFGVLQDELVEIKDEYATPRVSEIAPAWDGLE--DEDLIAREDMVVTVTHGGYI 537 Query: 511 RSAK--------GHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562 + G+ K D+ ++ PV+F + GR Y + LP Sbjct: 538 KRTPLATFRAQARGGKGRSGMATKDEDAVVELFVTSTHNPVLFFTNLGRVYRMKVWKLPE 597 Query: 563 A--RGQGEPLTGKLTLPPGATVDHMLMESDDQ------KLLMASDAGYGFVCTFNDLVAR 614 +G P+ L L V ++L +D+ ++ A++ G + + Sbjct: 598 GSPTTKGRPMVNLLPLGDDERVTNVLSLPEDEESWAALNIVFATEQGMVRRNSMDAFTNV 657 Query: 615 NRAGKALITLPE--NAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQL--SKGKGNK 670 GK + E ++ ++ + + AG+ + F +D + G G + Sbjct: 658 PTGGKYAMGFVEGTGDRLIGVELLS-EDQEIFLASDAGKAIRFAATDARETKSRTGIGVR 716 Query: 671 IINIPSAEAARGEDGL 686 + + L Sbjct: 717 GMTLKDDAKVVSMAVL 732 >UniRef50_Q5YLB5 DNA gyrase subunit A, chloroplastic/mitochondrial n=14 Tax=cellular organisms RepID=GYRA_NICBE Length = 935 Score = 758 bits (1958), Expect = 0.0, Method: Composition-based stats. Identities = 250/718 (34%), Positives = 395/718 (55%), Gaps = 32/718 (4%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 LH+ AY++Y+M V++ RALP + DGLKPV RRI+YAM ELGL++ +KK AR VG Sbjct: 94 ELHKEATEAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHELGLSSKKPYKKCARVVG 153 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 +VLGK+HPHGD+A Y+++V MAQ FS R PL+ G GN+G+ D AAMRYTE RL Sbjct: 154 EVLGKFHPHGDTAVYDSLVRMAQDFSLRSPLIRGHGNFGSIDADPP-AAMRYTECRLEAL 212 Query: 129 SE-LLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 +E +LL++L Q T D+VPNFD + +EP +LPAR+PN+LLNG +GIAVGMAT+IPPHNL E Sbjct: 213 TESMLLADLEQNTVDFVPNFDNSQKEPSLLPARVPNLLLNGASGIAVGMATNIPPHNLGE 272 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 + A ALI P+ TL +LL+ + GPD+PT I+ + + + + GRG V +R Sbjct: 273 LVDALSALIHNPEATLQELLEYMPGPDFPTGGIIMGNIGIL-EAFRTGRGRVVIRGKTDI 331 Query: 248 E-------DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 E A++I +P+Q + A ++E+IA + NK L V D+RDESD R+VI Sbjct: 332 ELLDSKTKRAAIIIQEIPYQTNKASLVEKIADLVENKILEGVSDIRDESDRSG-MRIVIE 390 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360 + D V+N+L+ T L+ S+ N+ I L+G+P + L E+L +L FR V R Sbjct: 391 LKRGS-DPAIVLNNLYRLTALQSSFSCNMVGI-LNGQPKLMGLKELLQAFLDFRCSVVER 448 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALM---SRFGLTETQAEAI 417 R ++L + +R HI+EG++V N+DEVI IR A F L+E QAEAI Sbjct: 449 RARFKLSQAQERNHIVEGIIVGLDNLDEVINTIRKASSNALAAASLRKEFELSEKQAEAI 508 Query: 418 LELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRR 477 L++ LR L LE K E L + +L+ +L+S++++ L+++E + + RR Sbjct: 509 LDISLRRLTALERNKFVEEGKSLRTQISKLEELLSSKKQILQLIEEEAIEIKNKFFNPRR 568 Query: 478 SPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGL--------NYKAGD 529 S L++ + + + D++P+E + + +S+ G+V+ K + + D Sbjct: 569 SMLEDTDSG-DLEDIDVIPNEEMLLAISEKGYVKRMKPDTFNLQNRGTIGKSVGKLRVND 627 Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHMLM 587 + + +++ V++ G Y+ +P S G PL L+L G + ++ Sbjct: 628 AMSDFLVCRAHDKVLYFSDKGTVYSSPAYKIPECSRTAAGTPLVQILSLSDGERITSIIP 687 Query: 588 ESD---DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLL 644 S+ DQ L+M + GY + N + G I L + + V +D + Sbjct: 688 VSEFAADQYLVMLTVNGYIKKVSLNYFASIRCTGIIAIQLVPDDEL-KWVKCCSNNDFVA 746 Query: 645 AITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 +Q G +++ P +++ L + +G+ + + + D + TL + Sbjct: 747 MASQNGMVILTPCANIRALGRNTRGSVAMRLKEGDKVASMDIIPDALQKELDKTLEVQ 804 Score = 65.3 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 37/268 (13%), Positives = 76/268 (28%), Gaps = 51/268 (19%) Query: 475 DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAG 528 +R + + E A + ++L+ G+++ + + Sbjct: 680 ERITSIIPVSEFAA---------DQYLVMLTVNGYIKKVSLNYFASIRCTGIIAIQLVPD 730 Query: 529 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLT--LPPGATVDHML 586 D K +N V G + R G G + L G V M Sbjct: 731 DELKWVKCCSNNDFVAMASQNGMVILTPCANI---RALGRNTRGSVAMRLKEGDKVASMD 787 Query: 587 MESD---------------------DQKLLMASDAGYGFVCTFNDLVAR--NRAGKALIT 623 + D LL S++GYG + NR G Sbjct: 788 IIPDALQKELDKTLEVQQRQYRSMKGPWLLFVSESGYGKRVPVSRFRTSPLNRVGLFGYK 847 Query: 624 LPENAHVMPPVVI-------EDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIP 675 + V+ ++ + ++ ++Q+G + V D+ S+ +G ++ + Sbjct: 848 FSSEDCLAAVFVVGFSLGEDGESDEQVVLVSQSGTVNRIKVRDISIQSRYARGVILMRLE 907 Query: 676 SAEAARGEDGLAQLYVLPPQSTLTIHVG 703 A + ++ P T Sbjct: 908 HAGKIQSASLISAADADPEDEDATAVAA 935 >UniRef50_C6HYH3 DNA gyrase, A subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYH3_9BACT Length = 854 Score = 758 bits (1958), Expect = 0.0, Method: Composition-based stats. Identities = 271/787 (34%), Positives = 418/787 (53%), Gaps = 54/787 (6%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 +++ E AYLNYSM VI+ RALP DGLKPVQRR+++AM E+G+ ++KS Sbjct: 11 RETTVSIDEEIRTAYLNYSMSVIVGRALPDARDGLKPVQRRVLFAMHEMGVRPGTAYRKS 70 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VGDV+GKYHPHGD+A Y+ V + QPF+ RYPL+DGQGN+G+ D + AAMRYTE Sbjct: 71 ARIVGDVIGKYHPHGDTAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDG-DAPAAMRYTEI 129 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 RL++ +E +++EL + T DW PN+D +L+EP++LPA LP +LLNG++GIAVGMAT+IPPH Sbjct: 130 RLTRLAEEMMAELDEETVDWSPNYDESLEEPRVLPASLPLLLLNGSSGIAVGMATNIPPH 189 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 N+ EV A + L+D P+ T L+ V GPD+PT I+ R+ I Y GRGS+ MR Sbjct: 190 NITEVLNALLHLMDNPEATDSDLMTFVTGPDFPTGGVIL-GRSGIESAYRTGRGSIVMRG 248 Query: 244 VWKKEDGA------VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 V + ED +VI +P+ V+ AR++E+IA +R KK+ + D+RDESD + R+ Sbjct: 249 VVEVEDSTRSDRQCLVIREIPYLVNKARLIEKIAELVREKKIEHIADIRDESDRDG-MRI 307 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 V+ + + +MN LF T L+ S+ N I ++GRP +L + L +L FR+D Sbjct: 308 VVELKREAI-PRIIMNQLFLLTPLQSSFGYNAVSI-VNGRPETLSLSQTLRVFLGFRKDV 365 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQA 414 V RR +RL K +R HILEGL A IDE+I +IR +E + L+S F +E QA Sbjct: 366 VTRRTLFRLRKARERFHILEGLRRAIDLIDEIIALIRRSGSPEEARNGLVSTFAFSELQA 425 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 +AIL+L+L+ L LE KI E E+ L+ ILAS + ++++E + + +GD Sbjct: 426 QAILDLRLQRLTGLEREKIEAEYREVAALIASLEAILASREALLEVIRQETRVLLERFGD 485 Query: 475 DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS--------AKGHDIDAPGLNYK 526 RR+ + E ++ ++P EP + LS G+++ + G+ K Sbjct: 486 GRRTVIVPDE--GELTPEALIPDEPYIVTLSYEGYIKRMPDAVLPTQRRGGKGRIGVTLK 543 Query: 527 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDH 584 D A + +++ ++F G+ Y + LP A +G+ L L+L P V Sbjct: 544 EDDCLIATLNARAHDTLLFFTDLGKVYRLKTYELPEAQRTARGKHLLSLLSLSPDERVAA 603 Query: 585 MLM---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASD 641 +L D LL + GY ++ + G L E + +V+ Sbjct: 604 ILPVRSFEGDNLLLFGTVKGYFKKTRLSEYANIRQGGLIATVLEEGDRLARVLVLHP-DR 662 Query: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI 700 LL T+ G + F ++ + +G + I + +D + + L + Sbjct: 663 RLLVATRGGMSIRFEADNIRPTGRATRGVRAIRLS------PDDSVVSFEEVSDSDLLLV 716 Query: 701 HVGKRKIKLRPEELQKVTGERGRRGT--------------LMRGLQRIDRVEIDSPR-RA 745 K K L + +RG +G +++ +R D +++ + R Sbjct: 717 TTEKGFGKRVDTNLFR-LQKRGGKGVRIAKVTPETGAVVAILKVTER-DDIDVVTDTGRV 774 Query: 746 SSGDSEE 752 SEE Sbjct: 775 IRIPSEE 781 Score = 78.4 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 38/241 (15%), Positives = 88/241 (36%), Gaps = 28/241 (11%) Query: 496 PSEPVTIVLSQMGWVRSAKGHDIDAPGLN------YKAGDSFKAAVKGKSNQPVVFVDST 549 + + + + G+ + + + + GD + ++ ++ Sbjct: 611 EGDNLLLFGTVKGYFKKTRLSEYANIRQGGLIATVLEEGDRLARVLVLHPDRRLLVATRG 670 Query: 550 GRSYAIDPITL-PSARG-QGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCT 607 G S + + P+ R +G + L P +V SD LL+ ++ G+G Sbjct: 671 GMSIRFEADNIRPTGRATRG---VRAIRLSPDDSVVSFEEVSDSDLLLVTTEKGFGKRVD 727 Query: 608 FNDLVARNRAGK--ALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 665 N + R GK + + + ++ D + +T GR++ P ++ ++ + Sbjct: 728 TNLFRLQKRGGKGVRIAKVTPETGAVVAILKVTERDDIDVVTDTGRVIRIPSEEIRKVGR 787 Query: 666 G-KGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRR 724 G KG K++++ + ++ + + P KR+ L+K R R Sbjct: 788 GAKGVKLVSLSDSP----QETIVCAAINP----------KREPTPLEAYLEKEPTGRESR 833 Query: 725 G 725 G Sbjct: 834 G 834 >UniRef50_C5JAM2 DNA gyrase subunit A n=1 Tax=uncultured bacterium RepID=C5JAM2_9BACT Length = 890 Score = 758 bits (1957), Expect = 0.0, Method: Composition-based stats. Identities = 234/748 (31%), Positives = 381/748 (50%), Gaps = 56/748 (7%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + D +R+ L E + +YL+Y+M VI+ RALP + DG K V RRI+Y + LG + + Sbjct: 6 LFDDIKRIPLEEEMKQSYLDYAMSVIVARALPDVRDGFKTVHRRILYVLKRLGFDHTKPH 65 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 +KSA VG+V+GKYHPHGDSA YE MV MAQ FS PL+DGQGN+G+ D S AAMRY Sbjct: 66 RKSALIVGEVMGKYHPHGDSAIYETMVRMAQDFSMSIPLIDGQGNFGSIDG-DSAAAMRY 124 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TESR++K S+ +L++L T + PN+DG+LQEP +LP R+P++LLNGT+GIAVGMAT+I Sbjct: 125 TESRMAKISKEILADLDCNTVAFRPNYDGSLQEPTVLPTRVPSMLLNGTSGIAVGMATNI 184 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL E+ A AL++ P L ++++ V+GPD+PT +I+ + I + GRGS+ Sbjct: 185 PPHNLGELLDACCALVENPLMELPEIMEFVKGPDFPTGGQIL-GTSGILNAFRTGRGSIV 243 Query: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 MR E+ A+V++ +P+QV+ A+++E+I R+K + + ++RDES+ Sbjct: 244 MRGKASVEELKGDKEAIVVTEIPYQVNKAKLVEKIGELSRDKVVDGIGEIRDESNRHG-I 302 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 R+VI + + + ++N L+ T L+ ++ N+ + + G P L L+ +L FR Sbjct: 303 RIVIEIKRDG-NSQVILNQLYKHTQLQMNFSANV-LALVKGVPQTLGLKASLTCFLEFRY 360 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMS---------- 405 D + RR Y LEK + HIL G +A +ID+VI +I+ + K AL + Sbjct: 361 DVIVRRTRYFLEKARDKAHILLGFALALSHIDQVITLIKAATDRKSALATLMHENWDAAS 420 Query: 406 -----------------RFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQ 448 + L+E QA AIL+L+L L +E+ +I+ + + Sbjct: 421 IKSYLALLQGPQAESGPYYRLSEIQANAILDLRLHKLTGMEQEEIKSDLQSTMDAIQEYI 480 Query: 449 GILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMG 508 IL ++ ++ E + Y RRS + E+ + + D++PSE + + +S G Sbjct: 481 DILGKPERVRKIMTDEFKTIKADYPTPRRSEILPAED--DIEDEDLIPSEEMVVTISFGG 538 Query: 509 WVRSAKGHDIDAP--------GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITL 560 +++ A G+ K D + + ++ ++F + G+ Y I L Sbjct: 539 YIKRVPLSTYRAQLRGGKGRSGMTMKEEDYVQDIIVANTHDRLLFFTNIGQVYRIPVHQL 598 Query: 561 PSAR--GQGEPLTGKLTLPPGATVDHMLMES----DDQKLLMASDAGYGFVCTFNDLVAR 614 P +G + L + + +L S D LL + G +D Sbjct: 599 PIGTPQAKGRAIINVLPIEKDEKITSILDVSKEMDDASTLLFITSKGQVRRNAVSDFERI 658 Query: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQ--LSKGKGNKII 672 GK + L + ++ V + +L T+ G + F +D+ G + I Sbjct: 659 QSNGKRAMVLEDGETLI-AVKTCRNDNTVLLNTRKGLFIRFDATDVRVFSGRTSTGVRGI 717 Query: 673 NIPSAEAARGEDGLAQLYVLPPQSTLTI 700 + + L V P + L + Sbjct: 718 KLAHDDTIISASVLEGFNVDPAERALYL 745 Score = 55.7 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 37/270 (13%), Positives = 78/270 (28%), Gaps = 66/270 (24%) Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK------A 527 D++ + + + + + ++ G VR D + N K Sbjct: 619 DEKITSILDVSKEMD--------DASTLLFITSKGQVRRNAVSDFERIQSNGKRAMVLED 670 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLM 587 G++ A +++ V+ G D + G+ + L T+ + Sbjct: 671 GETLIAVKTCRNDNTVLLNTRKGLFIRFDATDVRVFSGRTSTGVRGIKLAHDDTIISASV 730 Query: 588 ESD-----------------------------------------------DQKLLMASDA 600 +Q +L +D Sbjct: 731 LEGFNVDPAERALYLRARAAERGIQGETEDQDTTVEGALSDERLLELQEHEQYILTITDL 790 Query: 601 GYGFVCTFNDLVARNRAGKAL--ITLP-ENAHVMPPVVIEDASDMLLAITQAGRMLMFPV 657 G+G + + R G I L +N HV+ + D ++ IT GR+L V Sbjct: 791 GFGKRTSGYEYRTTGRGGLGANGILLSAKNGHVVNAFPVIP-QDQIMLITNKGRLLRCGV 849 Query: 658 SDLP-QLSKGKGNKIINIPSAEAARGEDGL 686 +D+ + +G ++ + E + Sbjct: 850 NDIRIAGRRTQGVILMRLEKDERVVNVTRI 879 >UniRef50_C1TNA3 DNA gyrase subunit A n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TNA3_9BACT Length = 814 Score = 757 bits (1956), Expect = 0.0, Method: Composition-based stats. Identities = 262/766 (34%), Positives = 414/766 (54%), Gaps = 37/766 (4%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 R L E + +YL+Y+M VI+ RALP DGLKPVQRRI++AM ELGL + +KKSAR Sbjct: 12 RHPLVEEIKRSYLDYAMSVIVGRALPDARDGLKPVQRRILFAMQELGLRHNQSYKKSARV 71 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VG+ +GKYHPHGDSA Y+ MV +AQ FS RY LVDGQGN+G+ D S AAMRYTE+RL Sbjct: 72 VGETMGKYHPHGDSAIYDTMVRLAQNFSMRYTLVDGQGNFGSIDG-DSAAAMRYTEARLQ 130 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 + EL+L ++ + T +W PNFD +L+EP +LP+++PN+L+NG+TGIAVGMAT++PPHNL Sbjct: 131 ELGELMLQDIDEDTVEWGPNFDESLKEPMVLPSQVPNLLVNGSTGIAVGMATNMPPHNLG 190 Query: 187 EVAQAAIALIDQPK-TTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245 EV A LI+ +L+ + GPD+PT I+ + I Y GRG + ++ + Sbjct: 191 EVVDAICYLIEAGDQADFGELMARMPGPDFPTGGVIL-GKDGIIDAYRTGRGRLVVQGLV 249 Query: 246 KKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 E+G VVI+ +P+ V+ ++E IA+ ++NK + V D+RDESD + R+V+ Sbjct: 250 HVEEGKRGKSNVVITEIPYMVNKTTMIETIASCVQNKTIDGVTDIRDESDRKG-LRVVLE 308 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360 + VD D V+ L+ + L+ ++ + +N+ +DGRP +L ++L+ +L RR VRR Sbjct: 309 VSRD-VDPDLVIRQLYRRSQLQNTFGV-INLALVDGRPVELSLTDMLNVFLGHRRTVVRR 366 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAEAI 417 R +RL+K R HILEGL+ A ID VI +IR D K L++ +E QA+AI Sbjct: 367 RTEFRLKKAEARAHILEGLVKALDVIDRVIALIRGSDNAALAKERLVAELDFSEIQAQAI 426 Query: 418 LELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRR 477 L++KL+ L LE K+ E + L + + + IL SE+ ++ ++ +EL A YGDDRR Sbjct: 427 LDMKLQRLTGLERDKLNDEFAGLLADIQRYRSILDSEKVLDGVIVEELVALKGKYGDDRR 486 Query: 478 SPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI--------DAPGLNYKAGD 529 + + +R + S+ D++P E + ++LS+ G++R D G + D Sbjct: 487 TKIVDRV-GQDCSDEDLIPREDIVVMLSRDGYLRRVPLEDYSLQAKGGKGRRGARLREED 545 Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR-GQGEPLTGKLTLPPGATVDHMLM- 587 ++ + + GR +AI + +R G+G+ + ++L V M Sbjct: 546 EVSLMGVSTTHDDIFLFTTKGRVFAIKGYIISESRTGKGKLIGKYISLENDERVVSMKTR 605 Query: 588 -ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI 646 + L + G ++L RAG+ ++TL E + ++ D LL + Sbjct: 606 RGQESGFLFFLTRRGIAKRLPSSELDNLTRAGRRVVTLDEGDE-IAQILPTSGMDDLLLV 664 Query: 647 TQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKR 705 + G+ L + + + +G K + + + + + + + L G Sbjct: 665 SAMGQALRVSEDEFRPMGRSARGVKAMRLKDGDRIISGEVVTE----DRRPILVSETG-- 718 Query: 706 KIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 I R RG G M+ + R + + + S D E Sbjct: 719 -IGKRTNFEDFTVHHRGGGG--MKVMSINSRTGLLAAATSVSEDDE 761 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 71/198 (35%), Gaps = 14/198 (7%) Query: 500 VTIVLSQMGWVRSAKGHDIDAPGLNYK------AGDSFKAAVKGKSNQPVVFVDSTGRSY 553 L++ G + ++D + GD + ++ V + G++ Sbjct: 612 FLFFLTRRGIAKRLPSSELDNLTRAGRRVVTLDEGDEIAQILPTSGMDDLLLVSAMGQAL 671 Query: 554 AIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 611 + R G G + L G + + ++D++ ++ S+ G G F D Sbjct: 672 RVSEDEF---RPMGRSARGVKAMRLKDGDRIISGEVVTEDRRPILVSETGIGKRTNFEDF 728 Query: 612 VARNRAG--KALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKG 668 +R G ++++ ++ D ++ +T GRM+ ++ L + G Sbjct: 729 TVHHRGGGGMKVMSINSRTGLLAAATSVSEDDEIIVMTAKGRMIRVAAKEIRVLGRTAAG 788 Query: 669 NKIINIPSAEAARGEDGL 686 + ++ + ++ + Sbjct: 789 SIVVRLDGGDSVVDLSVV 806 >UniRef50_P35810 DNA gyrase subunit A n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=GYRA_FIBSS Length = 903 Score = 757 bits (1955), Expect = 0.0, Method: Composition-based stats. Identities = 256/812 (31%), Positives = 406/812 (50%), Gaps = 89/812 (10%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 + + ++ YL YSM VI+ RALP DG KPV RR++Y+M +LG+ + KSAR VGD Sbjct: 15 VEQDMQDCYLRYSMSVIVARALPDARDGFKPVHRRVMYSMHKLGVVPNKGTVKSARIVGD 74 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 V+GKYHPHGD A Y+ + MAQ FS RYPLV GQGN+G+ D S AAMRYTE++++ Sbjct: 75 VIGKYHPHGDVAVYDTLARMAQDFSLRYPLVFGQGNFGSIDG-DSPAAMRYTEAKMNNLG 133 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 L+L +L + T D PN+D +L+EP +LP+ LPN+++NGT+GIAVGMAT++ PHNLREV Sbjct: 134 ALMLEDLEKETVDMGPNYDESLEEPLVLPSALPNMIVNGTSGIAVGMATNMAPHNLREVG 193 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED 249 A AL + P T + L++ V+GPD+PT A I+ R+ IR+ Y G G VR+RA + E Sbjct: 194 AAIHALAENPDLTGEDLMEYVKGPDFPTGA-IVCGRSGIREAYLTGHGRVRVRARTEIET 252 Query: 250 GA-----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 A ++++ +P+ V+ A + ++IA +R+K++ + D+RDES + R+VI R + Sbjct: 253 DAKGKPRIIVTEIPYMVNKAELCKKIADLVRDKRIDGITDIRDESSRD--IRIVIELRRD 310 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 364 V + V+N+LF T L+ ++ I N+ ++ P + L ++L ++ R D + R + Sbjct: 311 AVG-EVVLNNLFKYTQLQTTFSI-YNLALVNNLPKLLTLKDLLQVYIDHRLDVITRATQF 368 Query: 365 RLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAEAILELK 421 L+K RLHI+EGL +A NIDEV++IIR K +L RF L E Q++AI++++ Sbjct: 369 DLKKAAARLHIIEGLRIATQNIDEVVKIIRQSKTTEIAKQSLQDRFSLDEIQSQAIVDMR 428 Query: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQ 481 L L L K+ E +EL L+ IL + ++ ++L A YGD+RR+ + Sbjct: 429 LAQLVGLNIEKLEAEYNELIATVADLKDILEKRERRVAIMLQKLDAVVDKYGDERRTTIG 488 Query: 482 EREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GLNYKAGDSFKA 533 E + + D++ E I LS+ G++R A G K D+ + Sbjct: 489 EAIDDSD--DEDLIAEEEQVITLSKEGYIRRLPIDTFKAQNRGGKGIIGAGLKDEDNVEQ 546 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLMESD- 590 ++ ++ + GR Y LP G+G P+ + L G V ++ Sbjct: 547 IFTASTHSYLLVFTNKGRVYWTKVYRLPEGARNGKGRPIVNFVALTEGEKVQAIVPVRKF 606 Query: 591 --DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVI------------ 636 L+ A+ G +AG I+L E+ ++ ++ Sbjct: 607 GGYFCLVFATKKGIINKMDLTLFSRPRKAGVNAISLDEDDELVKVQLVGMSAEEYEASKN 666 Query: 637 -EDAS-------------------------------------DMLLAITQAGRMLMFPVS 658 D D+L+ T+ G+ + FP+S Sbjct: 667 ASDDDSAEAVENAAEAQAAEAAIAEESESGDAEDFANRPIPKDLLMIATKNGQAVTFPIS 726 Query: 659 DLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKV 717 + +G G K I + D + L L + + K K +V Sbjct: 727 CFRAMGRGTHGVKGITLAEG------DEVISLLWLKAGNKILTITEKGYGKRSEPGSYRV 780 Query: 718 TGERGRRGTLMRGLQRIDRVEIDSPRRASSGD 749 T RG +G +R L D++ + + D Sbjct: 781 T-RRGSKG--VRNLNVTDKIGAAVFVESVADD 809 Score = 76.1 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 8/162 (4%) Query: 540 NQPVVFVDSTGRS--YAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMA 597 ++ G++ + I A G+G +TL G V +L K+L Sbjct: 708 KDLLMIATKNGQAVTFPISCFR---AMGRGTHGVKGITLAEGDEVISLLWLKAGNKILTI 764 Query: 598 SDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASD--MLLAITQAGRMLMF 655 ++ GYG R K + L + V +E +D L+ ++ G+++ Sbjct: 765 TEKGYGKRSEPGSYRVTRRGSKGVRNLNVTDKIGAAVFVESVADDYDLIITSKDGQVIRI 824 Query: 656 PVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQS 696 +D+ + +G K I + + + L + + S Sbjct: 825 KAADIRLTGRNAQGVKAITLRDGDVVKDATALPSVEDIEQDS 866 >UniRef50_B0S912 DNA gyrase subunit A n=6 Tax=Leptospira RepID=B0S912_LEPBA Length = 843 Score = 757 bits (1954), Expect = 0.0, Method: Composition-based stats. Identities = 246/740 (33%), Positives = 392/740 (52%), Gaps = 35/740 (4%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 + + + + AYL+Y+M VI+ RALP + DGLKPV RR+++AM+E + + KSA+ V Sbjct: 38 VEIEDQMKEAYLDYAMSVIVGRALPDVRDGLKPVHRRVLHAMNERAWRSDRPYVKSAKIV 97 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 G+V+G YHPHGDSA YE MV MAQ FS R L+DGQGN+G+ D + AA RYTE+RL+K Sbjct: 98 GEVIGNYHPHGDSAVYETMVRMAQTFSMRETLIDGQGNFGSVDG-DNAAAYRYTEARLTK 156 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 +E LL ++ + T + PNFD T Q+P +LPA PNIL+NG+TGIAVGMAT+IPPHNL+E Sbjct: 157 LAEELLKDIEKNTVSFSPNFDDTRQQPDVLPANFPNILVNGSTGIAVGMATNIPPHNLKE 216 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 A IALI P TL +L+ I+ GPD+PT I + + Y G+GS+R+R+ Sbjct: 217 AVNAVIALIQNPDITLPELMKILPGPDFPTG-GTIIGGEGLYQAYATGKGSIRIRSKVDI 275 Query: 248 EDGA-----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 + +VI +P+QV+ +LE+I + K + + ++ D SD + + V + Sbjct: 276 IENNKGREIIVIHEIPYQVNKKNMLEKIGDLVNEKIIEGISEILDLSDRKGIRVEIHVKK 335 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRL 362 + ++N LF T L+ SY I + I LD RP + +L EIL + RR+ V +R Sbjct: 336 --DANAQVILNQLFKLTQLQVSYGITMLAI-LDNRPKIFSLKEILKSYAEHRREVVVKRT 392 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEAILE 419 + L+K KR HILEGL +A NIDEVI IIR + + A LM+ F L+E QA+AILE Sbjct: 393 EFDLDKAQKRAHILEGLRIALENIDEVIRIIRASKDVREAQSSLMATFSLSELQADAILE 452 Query: 420 LKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSP 479 ++L+ L LE KI E ++ L+ IL+ ++ +++ EL +Q++G+ R + Sbjct: 453 MRLQRLTSLEVQKIIDELEQVRILIADLEDILSKPDRVKSIICDELGKVSQSFGNTRTTE 512 Query: 480 L-QEREEAKAMSEHDMLPSEPVTIVLSQMGWV--------RSAKGHDIDAPGLNYKAGDS 530 + E E+ + D++ E V + LS+ ++ R K G++ K D Sbjct: 513 ISLESLESSTFNAEDLIADEEVVVQLSEDMFIKRLPMDTFRRQKRGGKGVQGISTKREDF 572 Query: 531 FKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHMLME 588 K ++ ++ + GR++ + LP A +G+ L + L + + Sbjct: 573 VKKLSSAMTHDNLMLFSNKGRAFLLKVYELPIATKEARGKSLKAVINLNDDEIITSLFTF 632 Query: 589 --SDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI 646 D+ LLM + G+ ++ ++G I L + ++ + + D + Sbjct: 633 RNFDESYLLMVTREGFVKKIQLDEFTNTKKSGIIAIGLRDGDELIDVIANPNNYD-VFIG 691 Query: 647 TQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKR 705 ++ G + +++L + G + + +D +A + + P + L Sbjct: 692 SKNGLAIRMNLNELRSQGRTASGVTAMKLE------DDDSIAGITKVEPNTNLFCISENG 745 Query: 706 KIKLRPEELQKVTGERGRRG 725 K E G RG +G Sbjct: 746 FGKRTDFEEFSTKG-RGGKG 764 Score = 86.1 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 41/213 (19%), Positives = 79/213 (37%), Gaps = 22/213 (10%) Query: 497 SEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDST- 549 E +++++ G+V+ + + + + GD + N VF+ S Sbjct: 636 DESYLLMVTREGFVKKIQLDEFTNTKKSGIIAIGLRDGDELIDVI-ANPNNYDVFIGSKN 694 Query: 550 GRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLMESDDQKLLMASDAGYGFVCT 607 G + ++ L R QG +G + L ++ + + L S+ G+G Sbjct: 695 GLAIRMNLNEL---RSQGRTASGVTAMKLEDDDSIAGITKVEPNTNLFCISENGFGKRTD 751 Query: 608 FNDLVARNRAGKALITLPENAHVMPPVVIED--ASDMLLAITQAGRMLMFPVSDLPQLSK 665 F + + R GK + L V I D LL ITQ+G + V + + + Sbjct: 752 FEEFSTKGRGGKGMTYLKIGEKNGRAVGISSVKEEDELLVITQSGMAIRVEVKTISMVGR 811 Query: 666 GK-GNKIINIPSAEAARGEDGLAQLYVLPPQST 697 G K++N + ED + V+ + Sbjct: 812 SAMGVKVVN------TKDEDFVKDFAVVRESDS 838 >UniRef50_B1ZTK3 DNA gyrase, A subunit n=3 Tax=Verrucomicrobia RepID=B1ZTK3_OPITP Length = 830 Score = 756 bits (1952), Expect = 0.0, Method: Composition-based stats. Identities = 257/778 (33%), Positives = 399/778 (51%), Gaps = 38/778 (4%) Query: 1 MSDMAERLA---LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 57 M +E+L+ + + + AY++YSM VI+ RALP DGLKPVQRR++YAM GL + Sbjct: 1 MYTASEKLSSANITDIMQTAYIDYSMSVIISRALPDARDGLKPVQRRVLYAMLREGLLHN 60 Query: 58 AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 117 F K A VG+VL YHPHGDS+ Y+ +V MAQP+ RYPL+D QGN+G+ D AA Sbjct: 61 RAFDKCAGVVGEVLKNYHPHGDSSVYDTLVRMAQPWVMRYPLIDPQGNFGSVDGDP-AAA 119 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RYTE RL+ +E LL ++ + T D+ PN+ + EP +LPA LPN+L+NG+TGIAVGM Sbjct: 120 YRYTECRLNAIAEDLLRDIEEDTVDFAPNYKESTTEPTVLPAALPNLLMNGSTGIAVGMT 179 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T+IPPHNL E+ A A+ID P+ ++D+L IVQGPD+PT +I R I + G+G Sbjct: 180 TNIPPHNLAEIIDATCAIIDNPRISVDELCTIVQGPDFPTGG-VIAGREGILSYLKTGKG 238 Query: 238 SVRMRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHE 292 VR R E+ +V++ +P+ V+ A ++ +IA + +K++ + DLRDESD Sbjct: 239 IVRTRGKAHTEEMKGGMEQIVVTEIPYNVNRATLVTRIAELVGDKQIDGIRDLRDESDEN 298 Query: 293 NPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLV 352 R+VI + V+N LF T LE S+ + L + RP N+ E++ ++ Sbjct: 299 T--RIVIELKRGE-QSKVVINQLFQKTALESSFGVTLLALD-KKRPKQMNIKELIECYIE 354 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEII---RNEDEPKPALMSRFGL 409 RR+ V RR +RL++ R HILEG ++A N+D+ ++II +N +E K LM+++ L Sbjct: 355 HRREVVTRRTRFRLKQAEDRAHILEGYIIALDNLDDFVKIIRASQNREEAKVRLMAKYPL 414 Query: 410 TETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADA 469 +E Q +AILEL+L L LE KI E EL K ++L+GIL SE K+ L+KKEL Sbjct: 415 SERQTDAILELRLYQLTGLERGKIEAEYLELMKLIEELRGILESEPKLLALIKKELAEMK 474 Query: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK--- 526 + Y RR+ + A D++P+E I +S +G+++ + + K Sbjct: 475 EKYTSPRRTEIIAA--AGEFRMEDVIPNEGCVITVSHLGFIKRTPVAEYRSQRRGGKGVI 532 Query: 527 -----AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPG 579 D ++ ++F S G+ +A +P +G+ ++ L L G Sbjct: 533 GAETYEEDFVANLFTASTHDYILFFTSIGQCHAKKVYDIPEGTRASKGKSVSSFLRLAEG 592 Query: 580 ATVDHMLMESD---DQKLLMASDAGYGFVCTFNDLVARNR-AGKALITLPENAHVMPPVV 635 + ML D D+ L+ A+ G +D R G I L E V+ V+ Sbjct: 593 EKIAAMLCVKDFAEDRYLVTATKRGIIKKSALSDYANATREGGLIGINLQEADSVIGTVL 652 Query: 636 IEDASDMLLAITQAGRMLMFPVSD---LPQLSKGKGNKIINIPSAEAARGEDGLAQLYVL 692 ++ L+ ++ G + F D +L + G + D L + V+ Sbjct: 653 TTGENE-LILVSHQGLAVRFRERDPESGEELFRATGRATGGVTGMRFKLKSDYLDVIEVV 711 Query: 693 PPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDS 750 ++ + E ++ RG G L +++ D Sbjct: 712 DHEAKFLVASEAGLGVRTRFEDYRLI-NRGGSGVWAIDLPEDGSIKLAGALSVREDDE 768 Score = 82.2 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 83/219 (37%), Gaps = 18/219 (8%) Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI-------DAPGLNYKAGDSF 531 L E E+ AM + + ++ G ++ + D G+N + DS Sbjct: 588 RLAEGEKIAAMLCVKDFAEDRYLVTATKRGIIKKSALSDYANATREGGLIGINLQEADSV 647 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA----RGQGEPLTGKLTLP---PGATVDH 584 V ++ V G + S R G G + +D Sbjct: 648 IGTVLTTGENELILVSHQGLAVRFRERDPESGEELFRATGRATGGVTGMRFKLKSDYLDV 707 Query: 585 MLMESDDQKLLMASDAGYGFVCTFNDLVARNR--AGKALITLPENAHV-MPPVVIEDASD 641 + + + K L+AS+AG G F D NR +G I LPE+ + + + D Sbjct: 708 IEVVDHEAKFLVASEAGLGVRTRFEDYRLINRGGSGVWAIDLPEDGSIKLAGALSVREDD 767 Query: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEA 679 ++ +T G+ + PV D+ + ++G KG +++ + + Sbjct: 768 EVMLLTAKGQSIRCPVKDIRETNRGAKGVRLVTLEPGDK 806 >UniRef50_A1TLU5 DNA topoisomerase IV subunit A n=22 Tax=Betaproteobacteria RepID=A1TLU5_ACIAC Length = 785 Score = 755 bits (1951), Expect = 0.0, Method: Composition-based stats. Identities = 314/764 (41%), Positives = 450/764 (58%), Gaps = 48/764 (6%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK- 61 + + L L + + AYL Y++ V+ RALP + DG+KPVQRRI++AM +GL + Sbjct: 15 ESGDHLGLAGYAQRAYLEYALSVVKGRALPDVCDGMKPVQRRILFAMERMGLAYGGPTRN 74 Query: 62 ------KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSF 115 KSAR VGDVLG++HPHGD + Y+A+V +AQ FS RYPL+DGQGN+G+ D Sbjct: 75 VPAKPVKSARVVGDVLGRFHPHGDQSAYDALVRLAQDFSQRYPLIDGQGNFGSRDGDG-A 133 Query: 116 AAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVG 175 AAMRYTE+RL++ + LLL E+ QGT D+VPN+DG+ +EP+ LPARLP LLNG +GIAVG Sbjct: 134 AAMRYTEARLTRIASLLLDEIDQGTVDFVPNYDGSTEEPRQLPARLPFALLNGASGIAVG 193 Query: 176 MATDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENG 235 +AT+IP HNLRE+A A +AL+ PK ++L +V GPDYP +II+S +I+ Y G Sbjct: 194 LATEIPSHNLREIADACVALVKNPKLADEELAALVPGPDYPGGGQIISSPGDIQDAYRTG 253 Query: 236 RGSVRMRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQ----MRNKK-------- 278 RGS+++RA WK ED +V++ LP VS +VLE+I ++ K Sbjct: 254 RGSLKVRARWKIEDLARGQWQMVVTELPPGVSAQKVLEEIEELTNPKVKAGKKALSQEQT 313 Query: 279 ------LPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMI 332 L ++D +RDES + P R+V P++ RV +++ L A T LE S INL M+ Sbjct: 314 QLKATVLGVLDVVRDESSKDAPVRIVFEPKTGRVPQQELITTLLAHTSLETSAPINLTMV 373 Query: 333 GLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEI 392 GLDG+P K+L +L EW+ FR+ T+ RR +RL KVL R+HILEG LNIDEVI I Sbjct: 374 GLDGKPVQKSLRRMLEEWIAFRQQTITRRSQHRLAKVLDRIHILEGRQTVLLNIDEVIAI 433 Query: 393 IRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILA 452 IR DEPK AL+ RF L++ QAE ILE++LR LA+LE +KI E EL +E+ +L+ ILA Sbjct: 434 IRASDEPKAALIERFRLSDRQAEDILEIRLRQLARLEAIKIEQELKELREEQGKLEDILA 493 Query: 453 SERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS 512 + + L+ KE++ADA+ + D RR+ +Q + A A + EPVT+V+SQ GWVR+ Sbjct: 494 NPASLRRLMVKEIEADAKQFADARRTLIQADKRATA---EVKVVDEPVTVVVSQKGWVRA 550 Query: 513 AKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTG 572 +GH DA +K+GD+ + ++ ++ S GR Y++ LP ARG G+P+T Sbjct: 551 RQGHGHDAGTFAFKSGDALYGTFECRTVDTLIAFGSNGRVYSVAVSQLPGARGDGQPITT 610 Query: 573 KLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMP 632 + L G H + LL+A GYGF+ + ARNR GKA ++L E + Sbjct: 611 LIDLEAGTQPVHYFAGPANAALLLAGSGGYGFIAAVEHMTARNRGGKAFVSLGEGEQLCR 670 Query: 633 P--VVIEDASD------MLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGE 683 P S + + GR+L F +++L Q++ G+G +I++ + G Sbjct: 671 PSHAAFTSGSQPLAPATHVCCASAGGRILTFEITELKQMANGGRGLMLIDLEPKDTLAGA 730 Query: 684 DGLAQLYVLPPQSTLTIHVGK-RKIKLRPEELQKVTGERGRRGT 726 + + GK R L L RGR+G Sbjct: 731 AAYTRSVRIAGVGR----GGKERDETLEIRSLNNARFPRGRKGK 770 >UniRef50_Q1D9G9 Type II DNA topoisomerase, A subunit n=3 Tax=Myxococcales RepID=Q1D9G9_MYXXD Length = 813 Score = 750 bits (1938), Expect = 0.0, Method: Composition-based stats. Identities = 268/769 (34%), Positives = 415/769 (53%), Gaps = 40/769 (5%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMS-ELGLNASAKFKKSARTV 67 +L + Y+NY++ VI RALP + DGLKPVQRRI++ M + L AK++KSA+ V Sbjct: 59 SLADEARRRYINYALSVITSRALPDVRDGLKPVQRRILFGMFHDHRLTHEAKYQKSAKVV 118 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 G V+G+YHPHGD++ YEA+V MAQ FS RYPLVDG GN+G+ D AAMRYTE RL+ Sbjct: 119 GSVMGQYHPHGDASIYEALVRMAQDFSLRYPLVDGHGNFGSLDGDG-AAAMRYTECRLAM 177 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 S LL+ELG+ T + P +DGTLQEP ++PAR+P +L+NGTTGIAVGMAT+IPPH+L E Sbjct: 178 LSSELLTELGKKTVAFRPTYDGTLQEPVVIPARVPQLLMNGTTGIAVGMATNIPPHHLGE 237 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 + A +ALI+ P+ LL V+GPD+PT +I+ + E+R IYE+G+GS+R+R +K Sbjct: 238 LVDALVALIENPQLLTKDLLKWVKGPDFPTGGQILNDKKELRDIYESGQGSIRIRGEYKL 297 Query: 248 ED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 ED +VI+++P+ V+ + ++ + +R +KLP++ D+RDES + R+V+ + Sbjct: 298 EDLKRGGQQIVITSIPYTVNKSTLVAKFGDLVRERKLPLITDVRDESTKD--VRIVLELK 355 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDG------RPAVKNLLEILSEWLVFRRD 356 + + + VM +L+ T L+ ++ +NL + P NL +IL +L FR D Sbjct: 356 KD-ANPELVMAYLYKQTPLQTNFGVNLTCLVPIKDKPELSTPERLNLRDILWYFLTFRFD 414 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQ 413 V +R + L ++L+R+HILEG + +DE+I+IIR + + L++RF L E Q Sbjct: 415 VVTKRFEHELGELLRRVHILEGFEKVYDALDEMIKIIRASEGKQDAARKLIARFKLDEAQ 474 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 +AILE+KL LA+LE + + E E E ++QGIL + K+ ++ EL Y Sbjct: 475 VDAILEMKLYKLARLEILVVEKELKEKRAEIKRIQGILKDKNKVWGTVRDELGEMKARYN 534 Query: 474 DDRRSPLQER-EEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFK 532 D RR+ + E S + E +V+++ GWV+ D + GD+ Sbjct: 535 DKRRTRIGGAGSEEMEFSAEAFIADEDAHVVITRDGWVKRV-REVKDPSTTRLREGDAVM 593 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESD-- 590 A + G +V + G +Y +P++ G GEP+ G V L Sbjct: 594 AVLAGSLKANLVLFSNFGTAYVTRFNDVPASTGYGEPVQKFFKFDDGERVVSALSLDARL 653 Query: 591 --DQKLLMASDAGYGFVCTFN-DLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAIT 647 QKL+ + G G L RAG+ E ++ + D D+L +T Sbjct: 654 PRPQKLVGVTKQGMGMRFLLEPHLEVSTRAGRRYAKTGEGDEIIGVQPVTD-RDLLAVLT 712 Query: 648 QAGRMLMFPVSDLPQL-SKGKGNKIINIPSAEAARGEDGLAQLYVLPPQ--STLTIHVGK 704 + L+ V+++ +L GKG +I + + + L V P Q + L K Sbjct: 713 EKTSALVCKVAEVNELAGPGKGVTVIKVDGGDRV-----VDFLAVSPAQKDAKLEFETQK 767 Query: 705 -RKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSEE 752 RK+ L P + + RG +G M +R E+ ++ Sbjct: 768 GRKLHLSPAKYE--VTGRGGKGHEMS--KRDAVKEVARAVTFIPLPEKK 812 >UniRef50_P48374 DNA topoisomerase 4 subunit A n=17 Tax=Betaproteobacteria RepID=PARC_NEIGO Length = 768 Score = 750 bits (1937), Expect = 0.0, Method: Composition-based stats. Identities = 328/758 (43%), Positives = 457/758 (60%), Gaps = 46/758 (6%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 + L L + E AYL Y+M V+ RALP + DG KPVQRRI++AM ++GL A AK KSA Sbjct: 12 SNTLMLGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSA 71 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 R VG++LGKYHPHGDS+ YEAMV MAQ F+ RYPL+DG GN+G+ D AAMRYTE+R Sbjct: 72 RVVGEILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDGDG-AAAMRYTEAR 130 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 L+ +ELLLSE+ QGT D++PN+DG EP LPARLP +LLNG +GIAVGMAT+IP HN Sbjct: 131 LTPIAELLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHN 190 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 L EV QAAIAL+ +P L+ + PD+ +IIT E+R+IYE G+GSVR+RA Sbjct: 191 LNEVTQAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRAR 250 Query: 245 WKKED-----GAVVISALPHQVSGARVLEQIAAQMRNK------------------KLPM 281 ++ E V+++ LP + A++L +I Q K L + Sbjct: 251 YEIEKLARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDL 310 Query: 282 VDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK 341 +D +RDESD E+P RLV P+S+R+D D +N L A T LE + +NL M+GLD RPA K Sbjct: 311 IDRVRDESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQK 370 Query: 342 NLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKP 401 NL IL EWL FR TV RRL +RL +V KRLHILEG L FL+IDEVI++IR D+PK Sbjct: 371 NLKTILQEWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKA 430 Query: 402 ALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLL 461 LM+ FGLTE QAE ILE++LR LA+LE K+ E +EL +E+ +L L E + L+ Sbjct: 431 DLMAVFGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLGDENEKRKLI 490 Query: 462 KKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP 521 KE+QAD + +GD RR+ ++E A EP+T++LS+ GW+RS GH++D Sbjct: 491 IKEMQADMKQFGDARRTLVEEAGRAVLTQTA---ADEPITLILSEKGWIRSRAGHNLDLS 547 Query: 522 GLNYKAGDSFKAAVK---GKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPP 578 +K GD K ++ + + F+ GR+Y+ID +P RG G P++ + L Sbjct: 548 QTAFKEGDRLKQTLEGPHCFTRRHPRFI--RGRTYSIDAAEIPGGRGDGVPVSSLIELQN 605 Query: 579 GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIE- 637 GA ML +Q L++S GYGF+ D+V R +AGK ++T V+PPV + Sbjct: 606 GAKPVAMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYA 665 Query: 638 ----DASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLP 693 + ++A T R L FP+ +L ++KGKG +II + + E+ + Sbjct: 666 SSFINPDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESMTH-------TAVS 718 Query: 694 PQSTLTIHVGKRKI--KLRPEELQKVTGERGRRGTLMR 729 + + I R+ + + +RG++G L+ Sbjct: 719 SEPEILIESEGRRGAAHKDRLPVALIEAKRGKKGRLLP 756 >UniRef50_C7M119 DNA gyrase, A subunit n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M119_ACIFD Length = 816 Score = 750 bits (1936), Expect = 0.0, Method: Composition-based stats. Identities = 229/731 (31%), Positives = 369/731 (50%), Gaps = 35/731 (4%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 E + L E E ++L YS+ VI+ RALP DGLKPV RRI+Y+M + G K A Sbjct: 12 VELIELQEEMERSFLEYSLSVIIARALPDARDGLKPVHRRILYSMYDAGYRPDRPHVKCA 71 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 + VGDV+ ++HPHGD+A Y+A+V MAQ FS +PL+DG GN+G+PD AA RYTE R Sbjct: 72 KVVGDVMSRFHPHGDAAIYDALVRMAQDFSLLHPLIDGHGNFGSPDPSTGPAASRYTECR 131 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 L+ + LL+ + + T D+VPN+D EP +LPAR PN+L+NG+ GIAVGMAT IP HN Sbjct: 132 LAPIALELLAGIDEDTVDFVPNYDSQTVEPSVLPARFPNLLVNGSQGIAVGMATQIPSHN 191 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 L EV A LID P+ T+D+L+ V GPD+PT II R IR Y GRGSV++RAV Sbjct: 192 LGEVVDAIAYLIDHPEATVDELMRFVPGPDFPTGG-IILGRDGIRDAYRTGRGSVKLRAV 250 Query: 245 WKKED----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 E+ +V++ +P Q S + ++I + K L + D+++ S + TR VI Sbjct: 251 ATIEEARSGYQIVVTEIPFQTSVEVIADKIRHLVEEKLLEGIRDMKNFS-AGSETRFVIE 309 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360 + + + + V+N+L+ T L+ S+ I + + +DG P NLL + ++ +R+ +RR Sbjct: 310 LKRD-ANPNVVLNNLYRLTPLQTSFPIQM-LALVDGAPRTLNLLGLCQIYVDHQREVIRR 367 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEII----RNEDEPKPALMSRFGLTETQAEA 416 R +RL K +RLHI+EGLL +D VI I + FG +E QA Sbjct: 368 RSEFRLGKARERLHIVEGLLSCIDQLDAVIATIRASEDRAAARAALMAEPFGFSELQANH 427 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDR 476 IL++ L L +L ++ E + L +L+ ILA ++++ ++K E+ A Y R Sbjct: 428 ILDMTLGRLTRLGREELEEEAATLRATIAELEAILADAQRLSAVVKDEMLAATAEYRQAR 487 Query: 477 RSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GLNYKAG 528 R+ + + D++ EP+ +++S+ G++++ A G K Sbjct: 488 RTRFEVDP--GDFAAEDLIEDEPIVVLISRSGYIKAVPESSFKAQGRGGRGVVGARVKDE 545 Query: 529 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHML 586 D + ++ S GR Y + LP +G L + L + ++ Sbjct: 546 DEIAHVISSSMLSRLLVFSSRGRVYQLRGYELPKLERSARGTALVNLVPLADDERITSVM 605 Query: 587 MESD---DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDML 643 D D L+ + G + R G I + + ++ VV + D + Sbjct: 606 GTKDFPEDADLVFFTRNGMVKRTAMAEYARSRRDGIIAIDVRGDDELVSVVVATEEHDGV 665 Query: 644 LAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHV 702 T+ G++L FP++++ + + G + I + + ++ + + Sbjct: 666 -VFTKRGQVLRFPLAEVRRTGRATAGVRSIRRADGDW------IVAGGLIEDGVEVLLVT 718 Query: 703 GKRKIKLRPEE 713 + K P + Sbjct: 719 SRGYGKRTPLD 729 Score = 76.5 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 29/216 (13%), Positives = 70/216 (32%), Gaps = 10/216 (4%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKA 533 L + E ++ P + + ++ G V+ + ++ + D + Sbjct: 595 LADDERITSVMGTKDFPEDADLVFFTRNGMVKRTAMAEYARSRRDGIIAIDVRGDDELVS 654 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQK 593 V V G+ + G+ + G + + D + Sbjct: 655 VVVATEEHDGVVFTKRGQVLRFPLAEV-RRTGRATAGVRSIRRADGDWIVAGGLIEDGVE 713 Query: 594 LLMASDAGYGFVCTFNDLVARNRAGKALIT--LPENAHVMPPVVIEDASDMLLAITQAGR 651 +L+ + GYG + +R G + L E + D +L ++ G+ Sbjct: 714 VLLVTSRGYGKRTPLDSFPVHHRGGAGIRGIGLTERKGELVAAAFVRPEDEVLIVSSQGQ 773 Query: 652 MLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGL 686 M+ + D+ + G K+I++ + E+ + Sbjct: 774 MIRVRIGDISNQGRYATGVKLISLQAEESVASVGVV 809 >UniRef50_B5RLZ1 DNA gyrase, subunit A n=5 Tax=Borrelia RepID=B5RLZ1_BORDL Length = 815 Score = 749 bits (1934), Expect = 0.0, Method: Composition-based stats. Identities = 253/767 (32%), Positives = 417/767 (54%), Gaps = 37/767 (4%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 + + + +YLNY+M VI+ RALP + DGLKPV RRI+Y+M E+GL + FKK+ R Sbjct: 17 NIKIEDEVRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSDKSFKKAGRI 76 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VGDVLGKYHPHGD + YEA+V +AQ FS RYP+V GQGN+G+ D AAMRYTE+R++ Sbjct: 77 VGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDGDPP-AAMRYTEARMA 135 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 K +E L+ ++ + T ++ PN+D +L EP++LPA P +L+NG++GIAVGMAT++ PHNLR Sbjct: 136 KIAEELVIDIDKQTVNFKPNYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATNMAPHNLR 195 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 EV A I +++ ++ L+ I++GPD+PT AEII + I+ Y G+GSV +RA + Sbjct: 196 EVCDAIIYMLEHDDVSIYDLIAIIKGPDFPTYAEIIYNENLIK-AYTTGKGSVVIRARYH 254 Query: 247 KEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 E+ +++I+ +P+ V+ + +L +IA ++ +KL V D+RDESD E R+V+ Sbjct: 255 IEEKSEDNISIIITQIPYAVNKSSLLMKIALLIKEEKLEGVSDIRDESDREG-IRIVLEI 313 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 + D VMN L+ T+L +++ IN N+ ++G P NL E++SE++ R++ +RRR Sbjct: 314 KK-GFDPHVVMNLLYEYTELRRNFSIN-NLALVNGIPKQLNLRELISEFIEHRKNILRRR 371 Query: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQAEAIL 418 + + L++ ++ HILEGL +A NID VIEIIR + + +M F L+E QA +IL Sbjct: 372 VEFDLKRAQEKAHILEGLNIALRNIDRVIEIIRFSRLVKDARECIMREFQLSEIQANSIL 431 Query: 419 ELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRS 478 ++KL+ L LE KI + + + IL S ++ N++++E+ + +GDDRR+ Sbjct: 432 DMKLQKLTSLEVAKIEEDFQVVLALIKDYEDILISPSRIVNMIREEIINLSLKFGDDRRT 491 Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK--------AGDS 530 + EE S D++ E V ++L++ G+++ + G+ K D Sbjct: 492 KIIYDEEVLKTSMSDLMQRENVIVILTKQGFIKRVLQDEYKLQGIGGKGLGSFDLQDSDQ 551 Query: 531 FKAAVKGKSNQPVVFVDSTGRSYAIDPITL--PSARGQGEPLTGKLTLPPGATVDHMLME 588 A+ ++ ++ + + G+ Y I+ + S +G+ + + L + + Sbjct: 552 VNVALCVNTHDFLLMISNEGKLYVINAYGIKDSSRTSRGQNIRELINLGEKEEILAIKNC 611 Query: 589 SD---DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLA 645 S+ D LL+ + G G ++ L + V ++ D ++ Sbjct: 612 SELSVDNYLLITTANGKIARIETEGFKTVKSRGVIIMKLDDKDFVTSAEIVS-RDDKIIC 670 Query: 646 ITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGK 704 I++ G F +D+ +G +G + + D L + + S L I Sbjct: 671 ISKKGNAFAFSSNDIRLTHRGTQGVSGMKVREG------DMLIKALAIKQGSHLLIMSEN 724 Query: 705 RKIKLRPEELQKVTG-ERGRRGTLMRGLQRIDRVEIDSPRRASSGDS 750 K E+ KVTG +RG G E+ S D Sbjct: 725 GYGKR--LEVSKVTGLKRGSTGYTCYKKSDEKAGEVVDAITVSQDDE 769 Score = 61.4 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 61/458 (13%), Positives = 155/458 (33%), Gaps = 57/458 (12%) Query: 263 GARVLE--QIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMN-HLFATT 319 A +LE IA + ++ + ++ R D ++ + + + + +++ L T Sbjct: 382 KAHILEGLNIALRNIDRVIEIIRFSRLVKDAREC--IMREFQLSEIQANSILDMKLQKLT 439 Query: 320 DLEKS-----YRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY---RLEKVLK 371 LE + +++ + + D + + I++ + R + + L + R K++ Sbjct: 440 SLEVAKIEEDFQV-VLALIKDYEDILISPSRIVN---MIREEIINLSLKFGDDRRTKIIY 495 Query: 372 RLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEM 431 +L+ + + + VI I+ + K L + L + L + Sbjct: 496 DEEVLKTSMSDLMQRENVIVILTKQGFIKRVLQDEYKLQGIGGK--------GLGSFDLQ 547 Query: 432 KIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG--DDRRSP---------- 479 L ++++E K+ + AYG D R+ Sbjct: 548 DSDQVNVALCVNTHDFLLMISNEGKLYVI---------NAYGIKDSSRTSRGQNIRELIN 598 Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG------LNYKAGDSFKA 533 L E+EE A+ L + ++ + G + + + D + Sbjct: 599 LGEKEEILAIKNCSELSVDNYLLITTANGKIARIETEGFKTVKSRGVIIMKLDDKDFVTS 658 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQK 593 A + ++ + G ++A + +G + + G + L Sbjct: 659 AEIVSRDDKIICISKKGNAFAFSSNDI-RLTHRGTQGVSGMKVREGDMLIKALAIKQGSH 717 Query: 594 LLMASDAGYGFVCTFNDLVARNRAGKALITLPENAH---VMPPVVIEDASDMLLAITQAG 650 LL+ S+ GYG + + R ++ + + D +L I+++ Sbjct: 718 LLIMSENGYGKRLEVSKVTGLKRGSTGYTCYKKSDEKAGEVVDAITVSQDDEILLISKSS 777 Query: 651 RMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLA 687 ++L V + + K +G +++++ + + Sbjct: 778 KVLRTLVDKISEQGKDARGMQVLSLDEDKLVAVSKFIK 815 >UniRef50_D1JED8 DNA gyrase subunit A n=1 Tax=uncultured archaeon RepID=D1JED8_9ARCH Length = 843 Score = 747 bits (1929), Expect = 0.0, Method: Composition-based stats. Identities = 261/767 (34%), Positives = 425/767 (55%), Gaps = 52/767 (6%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + +++ + ++Y++Y+M VI+ RALP DGLKPV RRI+Y M ELG+ + KK Sbjct: 12 ERVIEVSVEDEMTHSYMDYAMSVIVGRALPDARDGLKPVHRRILYGMHELGVTHNRPHKK 71 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SAR VGDVLGKYHPHGD A Y+ MV MAQ FSYRYPLVDGQGN+G+ D + AAMRYTE Sbjct: 72 SARIVGDVLGKYHPHGDVAVYDTMVRMAQDFSYRYPLVDGQGNFGSVDG-DAAAAMRYTE 130 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +RLSK + LL +L + T +W PNFD +L+EP++LPA+LPN+L+NG++GIAVGMAT++PP Sbjct: 131 ARLSKIAGELLVDLEKDTVEWSPNFDNSLKEPQILPAKLPNLLINGSSGIAVGMATNMPP 190 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HNL EV I +I++P+ ++++L+ I++ PD+PT II I++ YE GRGS+R+R Sbjct: 191 HNLTEVVDGVIRVIEEPEVSIEELMQIIKAPDFPTG-GIIIGYEGIKRAYETGRGSIRIR 249 Query: 243 AVWKKE----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 A + E +VI+ +P+QV+ +R++E+IA + K+ + LRDESD + R+V Sbjct: 250 AKAEIEVKGKKERIVINEIPYQVNKSRLVEEIAEFAKKYKVESISGLRDESDRKG-MRIV 308 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 I + + ++N L+ T LE ++ + +N+ +DG P V L E++ ++ R++ Sbjct: 309 IELK-AGANSAIILNRLYKHTQLENTFGV-INLALIDGEPRVLTLKELIECYIKHRKEVT 366 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAE 415 RRL Y LE+ KRLHIL+GL++A NIDEVI +I+ + K AL++RF L+E QA+ Sbjct: 367 IRRLQYELERAEKRLHILKGLIIAISNIDEVIRLIKAASDTKTAKSALIARFELSEEQAK 426 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 IL+++L L+ LE KI E++ELE + + L+ +L SE ++ LLK++L YGD Sbjct: 427 EILDMRLSRLSALERDKIETERAELETKINWLKEVLGSEARIYELLKEDLIEQKDKYGDA 486 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG--------LNYKA 527 RR+ + EE +SE D + + V + L+Q +V+ + K Sbjct: 487 RRTNI---EEMVTLSERDFVEEKEVILYLTQRDYVKRLPADIFKQQMRGGKGIAVIEKKE 543 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGK----LTLPPGAT 581 D ++ + + ++F G++Y + +P S +G+PL ++ Sbjct: 544 DDKIVNFIRASTRERLIFFTEFGKAYQVKTYEIPPSSRHSKGKPLVNIPGLSISTEEREK 603 Query: 582 VDHMLMESDD-----------QKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHV 630 + ++ L+ A+ G + L A G + + + Sbjct: 604 FVTAVAIPEEVDKGIETNTEGAYLVFATKRGVVKRSSLAKLKAIRSTGVVAVRTTKGDSL 663 Query: 631 MPPVVIEDASDM---------LLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAA 680 V+I+ + D ++ ++ G+ + F +L ++ + G + + + + Sbjct: 664 ADVVLIKPSLDSQDRGAGQNGIILSSKNGKAIFFHEEELREMGRYAAGVRGMRLEKDDEI 723 Query: 681 RGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTL 727 + L + V +S K K + + T RG +G + Sbjct: 724 ASVEAL-DVGVSKEKSRAVTITEKGYGKRTKLDAYRET-HRGGKGVI 768 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 37/245 (15%), Positives = 75/245 (30%), Gaps = 40/245 (16%) Query: 481 QEREEAKAMSEHDMLPSE-----------PVTIVLSQMGWVRSAKG------HDIDAPGL 523 EE + +P E + ++ G V+ + + Sbjct: 596 ISTEEREKFVTAVAIPEEVDKGIETNTEGAYLVFATKRGVVKRSSLAKLKAIRSTGVVAV 655 Query: 524 NYKAGDSFKAAV----------KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK 573 GDS V +G ++ G++ L R G G Sbjct: 656 RTTKGDSLADVVLIKPSLDSQDRGAGQNGIILSSKNGKAIFFHEEEL---REMGRYAAGV 712 Query: 574 --LTLPPGATVDHML-----MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE 626 + L + + + + + + ++ GYG + +R GK +I++ Sbjct: 713 RGMRLEKDDEIASVEALDVGVSKEKSRAVTITEKGYGKRTKLDAYRETHRGGKGVISIKT 772 Query: 627 NAHVMPPVVIED--ASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGE 683 V I+ +D L+ T G + V + + +G +I+N+ E Sbjct: 773 GERNGKVVCIKQVKNTDELMVATSDGMVTKISVRSISVQGRNTQGVRIMNVKKGERVVAV 832 Query: 684 DGLAQ 688 D L+ Sbjct: 833 DILSA 837 >UniRef50_Q2JY71 Type II DNA topoisomerase, A subunit n=10 Tax=Cyanobacteria RepID=Q2JY71_SYNJA Length = 849 Score = 745 bits (1924), Expect = 0.0, Method: Composition-based stats. Identities = 252/755 (33%), Positives = 394/755 (52%), Gaps = 53/755 (7%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 L + +YL Y+M VI+ RALP + DGLKPV RRI+YAM ELGL ++K AR VGD Sbjct: 28 LQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCARVVGD 87 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 VLGKYHPHGD A Y+A+V MAQ FS RYPLV G GN+G+ DD AAMRYTE RL++ S Sbjct: 88 VLGKYHPHGDQAVYDALVRMAQDFSSRYPLVAGHGNFGSVDDDPP-AAMRYTECRLAELS 146 Query: 130 EL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 LL + + D++PNFDG+ EP +LPARLP +LLNG+ GIAVGMAT+IPPHNL EV Sbjct: 147 HTALLQGISEAIVDFMPNFDGSQAEPTVLPARLPILLLNGSAGIAVGMATNIPPHNLGEV 206 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248 +ALID+P + ++LL + GPD+PT +I+ + IR+ Y GRGS+ +R V + E Sbjct: 207 VDGLLALIDEPDLSPEELLRWIPGPDFPTGGQIVDGQ-GIREAYLTGRGSITLRGVARFE 265 Query: 249 D----------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + A++IS P+QV+ A LE++A + +L + DLRDESD +V Sbjct: 266 EIQPGRGRHRRPALIISEFPYQVNKAAWLEKVAELVAQDRLSGIADLRDESDRSGMRVVV 325 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + R + V+ L+ T L+ ++ + + + ++G+P +L +IL +L FR T+ Sbjct: 326 ELKR--EANPQAVLQQLYKLTPLQSTFGV-ILLALVEGKPQQLSLKQILQHFLQFREATL 382 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAE 415 +R L++V ++ + G+++A +++ VI+++R + K L +R G T QAE Sbjct: 383 KRMFRAELQQVQRKAEEVAGMVLALADLEGVIDLLRQAPDSATAKAQLQTRLGCTSQQAE 442 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 IL + LR L LE ++ EQ+EL+ +LQG+L RK+ N LKKEL+ + + D Sbjct: 443 TILAMPLRRLTTLERERLYQEQAELQARIAELQGLLQDRRKLLNYLKKELRHLKKTFADP 502 Query: 476 RRSPLQEREEAKAMSEHDMLP------SEPVTIVLSQMGWVRSAK---GHDIDAPGLNYK 526 RR+ + E +A + +P + L++ G+VR P Sbjct: 503 RRTQILSASELEAEAAQ--IPGGEAGEDSRFLLQLTRKGYVRRLPLPGPRSRSNPAQREL 560 Query: 527 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDH 584 D+ + Q ++ + ++GR++ + +P + +G PL LP + Sbjct: 561 GEDTLVSLECVTPEQAILVLTASGRAFTVPIEGIPLSTGSSRGVPLVTL--LPNPEPIVA 618 Query: 585 MLMESD-----------DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPP 633 + L++ S G +LV ++ G A++ L E + Sbjct: 619 AFPLDPVRVSGAEHSPGEASLVVLSRQGRIKRVALAELVGLSQRGAAVLKLKEGDELGWA 678 Query: 634 VVIEDASD--MLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYV 691 + ++ T GR+L +P + + + P+ R E + + + Sbjct: 679 ALWHPGHQGYSVVLATSGGRVLRLDAEQIPLMGRA----AMGSPALRLGRTEQ-IVGMAL 733 Query: 692 LPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGT 726 LPPQ L + +K P + E+G+ G Sbjct: 734 LPPQGILVLASRSGYLKRLPLGEIPIL-EQGKVGV 767 >UniRef50_Q2JQA2 Type II DNA topoisomerase, A subunit n=2 Tax=Chroococcales RepID=Q2JQA2_SYNJB Length = 819 Score = 745 bits (1923), Expect = 0.0, Method: Composition-based stats. Identities = 250/760 (32%), Positives = 390/760 (51%), Gaps = 43/760 (5%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 L + +YL Y+M VI+ RALP + DGLKPV RRI+YAM ELGL ++K AR VGD Sbjct: 6 LQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCARVVGD 65 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 VLGKYHPHGD A Y+A+V M Q FS RYPLV G GN+G+ DD AAMRYTE RL++ S Sbjct: 66 VLGKYHPHGDQAVYDALVRMVQDFSSRYPLVAGHGNFGSVDDDPP-AAMRYTECRLAELS 124 Query: 130 EL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 LL ++ + D++PNFDG+ EP +LPARLP +LLNG++GIAVGMAT+IPPHNL EV Sbjct: 125 HTALLEQVSEEIVDFMPNFDGSQAEPTVLPARLPILLLNGSSGIAVGMATNIPPHNLGEV 184 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248 +ALID P + ++LL + GPD+PT +I+ ++ IR Y GRGS+ +R V + E Sbjct: 185 VDGLLALIDHPDLSPEELLRWIPGPDFPTGGQILDTQ-GIRAAYLTGRGSITLRGVARFE 243 Query: 249 D----------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + A+VIS P+QV+ A +E++A ++ + DLRDESD +V Sbjct: 244 EIQPGKGRHRRPALVISEFPYQVNKAAWIEKVAELANQDRISGIADLRDESDRSGIRVVV 303 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + R + V+ L+ T L+ ++ + + ++G P +L EIL +L FR T+ Sbjct: 304 ELKR--EANPQAVLQQLYKLTPLQSNFGA-ILLALVNGEPRQLSLKEILQHFLQFREATL 360 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAE 415 R L++V ++ + G+L+A +++ VIE++R + K L +R G T QAE Sbjct: 361 NRMFRAELQQVQRKAEEVAGMLLALADLEGVIELLRQAPDGTTAKAQLQTRLGCTPQQAE 420 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 IL + LR L LE ++ E ++L+ ++LQG+L+ RK+ N LKKEL+ + +GD Sbjct: 421 TILAMPLRRLTGLERERLHQEHAQLQTRIEELQGLLSDRRKLLNYLKKELRHLKKTFGDP 480 Query: 476 RRSPLQEREEAKA----MSEHDMLPSEPVTIVLSQMGWVRSAK---GHDIDAPGLNYKAG 528 RR+ + E +A + + + ++ G+VR P Sbjct: 481 RRTQILSASELEAEVAQIPSGEETEETHFLLQFTRKGYVRRLPLPSRRSRSNPAQRELGE 540 Query: 529 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHML 586 D Q ++ + + G+++ + +P + +G PL LP + Sbjct: 541 DVLVGLECVTLEQEILVLTAGGKAFTLPIAGIPLSTGSSRGVPLVTL--LPNPEPIVATF 598 Query: 587 MESDD---QKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASD-- 641 D L++ S G +L+ + G ++ L E + + + Sbjct: 599 TLDPDPGKASLVVLSRQGRIKRLALAELMGLTQRGSTVLKLKEGDELGWAALWDPDHQGY 658 Query: 642 MLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 ++ T GR+L V +P + + + P+ R E + + ++P Q L + Sbjct: 659 SVVLATSGGRVLRLDVQQIPLMGRA----AMGSPALRLGRTER-IVGMALVPSQGILVLA 713 Query: 702 VGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDS 741 +K E + ERG+ G DR ++ Sbjct: 714 SRLGYLKRLSLEEIPIL-ERGQVGA--PAFHFSDRGDVLV 750 Score = 75.7 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 80/223 (35%), Gaps = 24/223 (10%) Query: 478 SPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSF 531 + L E A D P + +VLS+ G ++ ++ + L K GD Sbjct: 586 TLLPNPEPIVATFTLDPDPGKASLVVLSRQGRIKRLALAELMGLTQRGSTVLKLKEGDEL 645 Query: 532 K-AAVKGKSNQ--PVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHML 586 AA+ +Q VV S GR +D +P G P L L + M Sbjct: 646 GWAALWDPDHQGYSVVLATSGGRVLRLDVQQIPLMGRAAMGSPA---LRLGRTERIVGMA 702 Query: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRA--GKALITLPE-NAHVMPPVVIEDASD-- 641 + L++AS GY + ++ R G + ++ V + + Sbjct: 703 LVPSQGILVLASRLGYLKRLSLEEIPILERGQVGAPAFHFSDRGDVLVGLVGLPPELERP 762 Query: 642 ---MLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAAR 681 L IT++ ++ F +++P S+ G + + E R Sbjct: 763 SHLQLDVITESEQVYSFSPAEIPLQSRSGGGSL--LVKGERVR 803 >UniRef50_UPI0001B9EC7F DNA topoisomerase IV, A subunit n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9EC7F Length = 819 Score = 742 bits (1915), Expect = 0.0, Method: Composition-based stats. Identities = 240/740 (32%), Positives = 390/740 (52%), Gaps = 40/740 (5%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 L E + + YS Y+I DRA+P + DGLKPVQRRI+YAM + G ++KSA+TVGD Sbjct: 12 LEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPYRKSAKTVGD 71 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 V+G YHPHGDS+ YE MV MAQP+ + LVDG GNWG+ DD AAMRYTE+RLS + Sbjct: 72 VMGNYHPHGDSSIYEGMVRMAQPWKMGHVLVDGHGNWGSQDDDP-AAAMRYTEARLSPIA 130 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 LL ++ + T + NFD T +EP +LP+R PN+L+NG +GI+ G AT+IPPHNLREV Sbjct: 131 MELLRDIEKRTVLFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEIPPHNLREVI 190 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE- 248 A IA++ +P+ LD+++ ++GPD+PT I+ + Y G+G V +R+ E Sbjct: 191 DACIAVMQKPEIELDEIMTFIKGPDFPTGGIIMGGEGIL-DAYRTGKGRVYLRSKTVIES 249 Query: 249 ----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 +VI+ +P+QV +R++ + KK+ + ++RDES E +V + + Sbjct: 250 LRGGKQQIVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLRIVVELKK-- 307 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 364 D + ++ +LF TDL+ +Y N+ I ++ P L +LS ++ +R+ V R + Sbjct: 308 DADANGILAYLFKKTDLQITYNFNMVAI-VNKTPQQLGLKAMLSAYIDHQREVVTHRTQF 366 Query: 365 RLEKVLKRLHILEGLLVAFLNIDEVIEII---RNEDEPKPALMSRFGLTETQAEAILELK 421 LEK R H+LEGL+ A +DEVI I +N + + L FG TE QA++IL L+ Sbjct: 367 ELEKAEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLQWMFGFTERQADSILTLQ 426 Query: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQ 481 L L LE ++ E EL K+ + L+ IL S++K+ +++KEL + YG DRRS +Q Sbjct: 427 LYRLTNLEIHSLQKELDELTKKIEGLRAILDSDKKLIGVIRKELIEIREKYGIDRRSVIQ 486 Query: 482 EREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAK-----GHDIDAPGLNYKAGDSFKAAVK 536 E E ++ ++ +E V + LS G+++ + K GD + Sbjct: 487 EEVEEIKVNLEVLVNAEDVLVTLSNEGYIKRTSMLSFTRSGGELESSGVKEGDYITRLFE 546 Query: 537 GKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLMESD---- 590 + + ++ S G+ + + +P + + G + + +P + ++ S+ Sbjct: 547 VNTLENLLIFTSRGQYFLLPVHQVPEYKWKDAGTAIVNVIQVPKEDHIVSVIPVSNFDEA 606 Query: 591 DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAG 650 + L+ S G + V + R+G + VV+ D++ ++ I++ G Sbjct: 607 GKSLVFVSRKGQVKRTDLKEYVTK-RSGAVAAAKVAAEDSIIQVVMSDSNKDIVLISKEG 665 Query: 651 RMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYV-LPPQSTLTIH---VGKR 705 + F ++ + + G + I + G++ +A L+V LTI GKR Sbjct: 666 MSIRFNEQEVNAMGRVSGGVRGIQLRD-----GDEVVAALWVENDEGEILTITDLGYGKR 720 Query: 706 KIKLRPEELQKVTGERGRRG 725 + L RG +G Sbjct: 721 SLLLDYPA-----QSRGGKG 735 Score = 55.3 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 62/181 (34%), Gaps = 20/181 (11%) Query: 502 IVLSQMGWVRSAKGHDIDAPGLNYKA------GDSFKAAVKGKSNQPVVFVDSTGRSYAI 555 + +S+ G V+ + A DS V SN+ +V + G S Sbjct: 611 VFVSRKGQVKRTDLKEYVTKRSGAVAAAKVAAEDSIIQVVMSDSNKDIVLISKEGMSIR- 669 Query: 556 DPITLPSARGQGEPLTGK--LTLPPGATVDHML-MESDDQKLLMASDAGYGFVCTFNDLV 612 G G + L G V L +E+D+ ++L +D GYG D Sbjct: 670 --FNEQEVNAMGRVSGGVRGIQLRDGDEVVAALWVENDEGEILTITDLGYGKRSLLLDYP 727 Query: 613 ARNRAGKALIT--------LPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS 664 A++R GK + T + N + + A ++ G+ +P + Sbjct: 728 AQSRGGKGMATFEFKEGKRVKPNGSAIVGAFYCREPLQINAYSEDGQAFPIHTEKVPIME 787 Query: 665 K 665 + Sbjct: 788 R 788 >UniRef50_Q45066 DNA topoisomerase 4 subunit A n=136 Tax=Firmicutes RepID=PARC_BACSU Length = 806 Score = 740 bits (1912), Expect = 0.0, Method: Composition-based stats. Identities = 231/745 (31%), Positives = 386/745 (51%), Gaps = 33/745 (4%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 ++ L L E + + YS Y+I DRALP DGLKPVQRRI+YAM G F+K Sbjct: 5 ELFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRK 64 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 +A+TVG+V+G YHPHGDS+ YEAMV M+Q + R L++ GN G+ D AAMRYTE Sbjct: 65 AAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPP-AAMRYTE 123 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +RLS + LL ++ + T ++VPNFD T +EP +LPA PN+L+NG+TGI+ G ATDIPP Sbjct: 124 ARLSPIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPP 183 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 H+L EV A I I P ++D+L+++++GPD+PT II IRK YE G+G + +R Sbjct: 184 HHLGEVIDAVIKRIQMPSCSVDELMEVIKGPDFPTGG-IIQGVDGIRKAYETGKGKIIIR 242 Query: 243 AVWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 + E +VI+ +P +V+ A +++++ +KK+ + ++RDE+D R+ Sbjct: 243 GKAEIETIRGGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTG-LRV 301 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 VI + D ++N L+ TDL+ +Y N+ I + RP + +L IL ++ +++ Sbjct: 302 VIELKK-EADAKGILNFLYKNTDLQITYNFNMVAI-HNRRPMLMSLPSILDAYIGHQKEV 359 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQA 414 V R Y L+K R HI+EGL+ A +DEVI IR+ + K L++++ TE QA Sbjct: 360 VTNRSVYELQKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAKYEFTEPQA 419 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 EAI+ L+L L + ++ E EL K+ ++L+ IL++++K+ ++ L+A + Y D Sbjct: 420 EAIVSLQLYRLTNTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKKYAD 479 Query: 475 DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI---DAPGLNYKAGDSF 531 RRS ++E+ E ++ M+ SE V + +++ G+++ + K D Sbjct: 480 TRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFGMKDTDRM 539 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLM-- 587 + + ++ + G LP R + G+ + +T+ T+ + Sbjct: 540 LHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDETIVKAIPIK 599 Query: 588 -ESDDQKLLMASDAGYGFVCTFNDLVARN-RAGKALITLPENAHVMPPVVIEDASDMLLA 645 LL + G A+ + L ++ V + + + Sbjct: 600 EFDPSAYLLFFTKNGMVKKTELTHYKAQRYSKALVALNLKGEDELID-VHVTNGESQIFM 658 Query: 646 ITQAGRMLMFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGK 704 T G L F ++ + + G K IN+ +D + +L ++ + + Sbjct: 659 ATHLGYGLWFGEDEVNVVGARAAGVKGINLKE------DDFVVSGEILQQSDSIVLFTQR 712 Query: 705 RKIK-LRPEELQKVTGERGRRGTLM 728 +K + E +K R +RG +M Sbjct: 713 GAVKRMSLSEFEK--TSRAKRGVVM 735 >UniRef50_C5CST5 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Variovorax paradoxus S110 RepID=C5CST5_VARPS Length = 798 Score = 740 bits (1910), Expect = 0.0, Method: Composition-based stats. Identities = 318/778 (40%), Positives = 461/778 (59%), Gaps = 61/778 (7%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGL------- 54 +D L L ++ + AYL Y++ V+ RALP + DG KPVQRRI+Y+MS +GL Sbjct: 14 TDGDTTLTLADYAQTAYLEYALSVVKGRALPDVSDGQKPVQRRILYSMSRMGLGFGGANG 73 Query: 55 NASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKS 114 AK KSAR VGDVLG++HPH D A Y+A+V MAQ FS RYPL DGQGN+G+ D Sbjct: 74 TVGAKPVKSARVVGDVLGRFHPHSDQAAYDALVRMAQDFSQRYPLADGQGNFGSRDGDG- 132 Query: 115 FAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAV 174 AAMRYTE+RL++ + LLL E+ +GT D++PN+DG+ +EP++LPARLP LLNG +GIAV Sbjct: 133 AAAMRYTEARLARITSLLLDEIDEGTVDFIPNYDGSTEEPRLLPARLPFTLLNGASGIAV 192 Query: 175 GMATDIPPHNLREVAQAAIALID-QPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYE 233 G+AT+IP HNLRE+A A +ALI K + ++LL IV GPDYP A+II+ A+I Y Sbjct: 193 GLATEIPSHNLREIADACVALIKSNGKLSDEELLQIVPGPDYPGGAQIISGPADIADAYR 252 Query: 234 NGRGSVRMRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQ----MRNKK------ 278 GRGS+++RA WK ED +V++ LP VS +VLE+I ++ K Sbjct: 253 TGRGSLKVRARWKIEDLARGQWQLVVNELPPGVSTQKVLEEIEEITNPKVKAGKKALSAD 312 Query: 279 --------LPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLN 330 L ++D +RDES + RLV P+++R+ D+ + L A T LE S INL Sbjct: 313 QTQLKAAMLSVLDVVRDESSKDAAVRLVFEPKTSRISQDEFITTLLAQTSLETSSPINLT 372 Query: 331 MIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVI 390 M+G+DG+P K+L ++L+EW+ FR TV +R +RL KV+ R+HILEG + LNIDEVI Sbjct: 373 MVGIDGKPTQKSLRQMLNEWIAFREVTVEKRSRFRLNKVMDRIHILEGRQLVLLNIDEVI 432 Query: 391 EIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450 IIR ++PK AL++RF L+E QAE ILE++LR LA+LE +KI+ + EL E+ +L+ I Sbjct: 433 AIIRAAEDPKAALIARFNLSEVQAEDILEIRLRQLARLEGIKIQQQLDELRTEQKKLEDI 492 Query: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510 L S + LL KE++ADA+ + D RR+ +Q + A A + EPVT+++SQ GWV Sbjct: 493 LGSPAALRRLLVKEIEADAKTFEDPRRTLIQAEKRAVA---EVKVVDEPVTVIVSQKGWV 549 Query: 511 RSAK--------GHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDS----TGRSYAIDPI 558 R+ K G+ AP ++K+GD+ A + +S ++ S + R Y + Sbjct: 550 RAQKGWASEKAAGNGGTAPEYSFKSGDTLYGAFECRSVDTLLVFGSAKDKSVRVYTVPVA 609 Query: 559 TLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAG 618 +LP ARG G+P+T + L G V H +L+A+ GYGF+ T ++++R R G Sbjct: 610 SLPGARGDGQPVTTLIELDAGTHVTHFFAGPVGASVLLANTGGYGFIATVENMMSRQRGG 669 Query: 619 KALITLPENAHVMPPVVIEDAS--------DMLLAITQAGRMLMFPVSDLPQLSK-GKGN 669 KA I + E + P ++ AS + + GR+L F +++L L K G+G Sbjct: 670 KAFIDVGEGEQLCRPSLVGGASGAEPMPAATHVACASTGGRILTFDIAELKSLPKGGRGL 729 Query: 670 KIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGK-RKIKLRPEELQKVTGERGRRGT 726 +I++ + + G + + GK R L L G R R+G Sbjct: 730 TLIDLDAKDTLAGAAAYTRSVKIEGIGR----GGKERDETLEIRTLNNARGSRARKGK 783 >UniRef50_Q89AS3 DNA gyrase subunit A n=11 Tax=Proteobacteria RepID=GYRA_BUCBP Length = 847 Score = 739 bits (1909), Expect = 0.0, Method: Composition-based stats. Identities = 248/790 (31%), Positives = 406/790 (51%), Gaps = 72/790 (9%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 ++ + + +N+YL+Y+M VI+ RALP + DGLKPV RRI++AM L + + +KKSAR Sbjct: 10 KIDIEDELKNSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKVLNNDWNKTYKKSARI 69 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VGDV+GKYHPHGD+A Y+A+V MAQPFS RY L+DGQGN+G+ D S AAMRYTE R+S Sbjct: 70 VGDVIGKYHPHGDTAVYDAIVRMAQPFSLRYVLIDGQGNFGSIDG-DSAAAMRYTEIRMS 128 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 K + LL++L + T + N+DGT + P++LPA++PN+L+NG++GIAVGMAT+IPPHN++ Sbjct: 129 KIAYELLNDLDKNTVSFFSNYDGTEKIPEVLPAKIPNLLINGSSGIAVGMATNIPPHNIK 188 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 EV +A ID TL +L++ + GPD+PT +I + I K Y+ G+G + +RA Sbjct: 189 EVINGCLAFIDDQNITLKKLMEHIPGPDFPTAG-LINGKRGIEKAYKTGKGKIYIRAKSI 247 Query: 247 KE------DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 E +++I LP+QV+ ARV++ IA ++ KK+ + LRDESD E ++ + Sbjct: 248 IEIQKKTKKKSIIIYELPYQVNKARVIKGIANLVKEKKIEGITTLRDESDKEGMRIVIEI 307 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360 + + ++ ++N L++ T LE S+ IN+ + + G+P V L EIL+ ++ RR + R Sbjct: 308 KKETKAEI--ILNQLYSLTQLEISFGINM-VALIHGQPKVMTLKEILNAFINHRRKIIMR 364 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALM------------- 404 R + L K+ K++HILEGL+++ NID +I +I+ +E K L Sbjct: 365 RSLFELNKIRKKIHILEGLIISLDNIDLIINLIKKSSTLEEAKNKLKTYHWYSKHAQYTQ 424 Query: 405 ---------------------SRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKE 443 +F LT Q +AILEL+L+ L LE K+ E +L K Sbjct: 425 ILKKNAHSLTPYDKKLRPIDTQKFFLTPEQIQAILELRLQKLTHLEHKKLISEYKQLFKT 484 Query: 444 RDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIV 503 + L+ IL + + ++K EL +GD RR+ + ++ D++ E V I Sbjct: 485 SNNLENILKNNNILTKIMKDELIKIRDNFGDKRRTKI--NVNYSDINTSDLINKENVVIT 542 Query: 504 LSQMGWVR--------SAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAI 555 LS G+V+ + K + K D + + ++ ++ S G Y + Sbjct: 543 LSYSGYVKYQLLSSYEAQKRGGKGKLAVKTKEEDFIENLLVANTHDIILCFSSKGILYWM 602 Query: 556 DPITLPSA--RGQGEPLTGKLTLPPGATVDHMLM---ESDDQKLLMASDAGYGFVCTFND 610 LP A +G P+ L L + +L D + MA+ G + + Sbjct: 603 KVYQLPEASRHARGRPIVNLLPLSSNERITAILPISEYKDSINIFMATSKGMVKKTSLYE 662 Query: 611 LVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGK-GN 669 G I L + ++ + + ++ ++ T G+ + F + + + G Sbjct: 663 FKKPRTKGIIAINLKADDELIGVSL-TNGNNTIMLFTAQGKAVHFSEILVRKTGRTAIGV 721 Query: 670 KIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMR 729 + I I D + L V + + K + R +GT+ Sbjct: 722 QGIKIKK------SDKVVSLVVPKKHGNILLITEHGYGKRTEIHEFPIK-SRATQGTIAM 774 Query: 730 GLQRIDRVEI 739 + + + + I Sbjct: 775 KITKKNGIVI 784 Score = 70.3 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 29/196 (14%), Positives = 71/196 (36%), Gaps = 13/196 (6%) Query: 497 SEPVTIVL-SQMGWVRSA------KGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDST 549 + + I + + G V+ K +N KA D N ++ + Sbjct: 641 KDSINIFMATSKGMVKKTSLYEFKKPRTKGIIAINLKADDELIGVSLTNGNNTIMLFTAQ 700 Query: 550 GRSYAIDPITLPSARGQGEPL-TGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTF 608 G++ + + + + + + V +++ +L+ ++ GYG Sbjct: 701 GKA--VHFSEILVRKTGRTAIGVQGIKIKKSDKVVSLVVPKKHGNILLITEHGYGKRTEI 758 Query: 609 NDLVARNRA--GKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK- 665 ++ ++RA G + + + ++ + D ++ IT AG ++ V ++ L + Sbjct: 759 HEFPIKSRATQGTIAMKITKKNGIVIGTMQVVNQDQIIIITNAGTLVRTRVLEIGILGRN 818 Query: 666 GKGNKIINIPSAEAAR 681 +G II E Sbjct: 819 TQGVIIIRTSKKEKVV 834 >UniRef50_B8CXA6 DNA gyrase subunit A n=1 Tax=Halothermothrix orenii H 168 RepID=B8CXA6_HALOH Length = 796 Score = 737 bits (1904), Expect = 0.0, Method: Composition-based stats. Identities = 247/738 (33%), Positives = 401/738 (54%), Gaps = 32/738 (4%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 M++ +A+ + +++YL+YS+ VI RALP + DGLKPV RRI+YA ELGL Sbjct: 1 MAEKIRSIAIEDKMKDSYLSYSLSVIASRALPDVRDGLKPVHRRILYAARELGLTHDKPH 60 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VG+VLGKYHPHGD++ Y+AMV MAQ F+ RY L+DG GN+G+ D S AAMRY Sbjct: 61 KKSARIVGEVLGKYHPHGDASVYDAMVRMAQYFNQRYCLIDGHGNFGSIDG-DSPAAMRY 119 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RL++ +E +++++ Q T D+V NFDG+LQEP++LP ++PN+L+NG +GIAVGM+T I Sbjct: 120 TEARLTELAEDIMADITQDTVDFVDNFDGSLQEPEILPTKVPNLLINGASGIAVGMSTSI 179 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL EV A + L+ P L+ ++ + GPD+PT A+I+ + I+K Y+ G G + Sbjct: 180 PPHNLGEVVDAMVHLLKHPNAKLETIMKYIPGPDFPTGAKIV-GLSGIKKAYKTGNGKIT 238 Query: 241 MRAVWKKE----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 +RA + E ++I +P+ ++ ++LE IA + K+ V DLRDESD E Sbjct: 239 LRARTQIEKKGRKKQIIIKEIPYHLNKVKLLEDIAELINKGKIDNVSDLRDESDQEGLRI 298 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR-PAVKNLLEILSEWLVFRR 355 +V + + D D ++N L+ T L+ +YRIN M+ LDG+ P V +L+ IL ++ FRR Sbjct: 299 VVEL--KSGADPDIILNQLYKFTSLQTNYRIN--MLALDGKQPRVMDLITILKNFINFRR 354 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTET 412 + RR Y+L K +R H+L+GL+ A +D VI IIR+ E + L + +TE Sbjct: 355 QVITRRTKYKLNKAKERFHLLQGLITAIDKLDLVISIIRHSKSTKEARQKLQEKLVITEK 414 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QAEAIL ++L+ L +EE K+ E + LE++ + IL ++ +++ +LKKEL Y Sbjct: 415 QAEAILRMRLQKLVGMEEEKLHQESAGLEEQIKYYKKILNNKNELDKVLKKELLDIKNKY 474 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFK 532 D R++ + E EE + + D++ E V + S ++ + G D Sbjct: 475 ADKRKTEIIEDEEKAIIEKTDLIKKEKVFLTFSYRQNIKRTTSSEYARAG----KNDYII 530 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARG--QGEPLTGKLTLPPGATVDHMLM--- 587 + G + ++F +TG Y + +P G G+ + L +P + ++ Sbjct: 531 DTMTGTTLDTLLFFTNTGDVYTLPVHKIPEHHGLSTGDNIKDFLKIPLSKKIVKVICLNE 590 Query: 588 ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAIT 647 E+ ++ + +A+ G T + I L + V+ I D + +L T Sbjct: 591 ETKEKYITIATKQGMVKK-TIGGEYQTTYSRIKAIKLNKGDEVVGVE-ITDGNQEILLGT 648 Query: 648 QAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRK 706 + + + F + + G+ I + D + ++ +++ + Sbjct: 649 KKAKTIRFEEDSVSDTGRNTIGSIGIKLAKG------DEVVSFNLVNNNTSVVSISKTGR 702 Query: 707 IKLRPEELQKVTGERGRR 724 K P E G+ Sbjct: 703 GKRSPIEEYNPQNRNGKG 720 Score = 62.6 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 76/196 (38%), Gaps = 7/196 (3%) Query: 497 SEPVTIVLSQMGWVRSAKGHDIDAPGLNYKA-----GDSFKAAVKGKSNQPVVFVDSTGR 551 E + ++ G V+ G + KA GD NQ ++ + Sbjct: 593 KEKYITIATKQGMVKKTIGGEYQTTYSRIKAIKLNKGDEVVGVEITDGNQEILLGTKKAK 652 Query: 552 SYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 611 + + ++ S G+ + + L G V + +++ ++ S G G + Sbjct: 653 TIRFEEDSV-SDTGRNTIGSIGIKLAKGDEVVSFNLVNNNTSVVSISKTGRGKRSPIEEY 711 Query: 612 VARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGN-K 670 +NR GK L T + + M V+ + D +L T ++ V+DL + S+ + Sbjct: 712 NPQNRNGKGLKTCGSSIYKMAGVICANPDDYILITTGNEKLYTVKVNDLTETSRTGNMYE 771 Query: 671 IINIPSAEAARGEDGL 686 ++++ + + G + L Sbjct: 772 VVSLKNDDKITGVEKL 787 >UniRef50_D2LZG6 DNA topoisomerase IV, A subunit n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZG6_BACS4 Length = 834 Score = 737 bits (1903), Expect = 0.0, Method: Composition-based stats. Identities = 226/744 (30%), Positives = 390/744 (52%), Gaps = 28/744 (3%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 L L + + + YS Y+I DRALP DGLKPVQRRI+YAM + F+K+A+TV Sbjct: 10 LPLEDVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYTDRNTSDKPFRKAAKTV 69 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 G+V+G YHPHGDS+ Y+AM+ +Q + R+ LV GN G+ D AAMRYTE+RLS Sbjct: 70 GNVIGNYHPHGDSSVYDAMIRQSQDWKMRHLLVQMHGNNGSIDGDPP-AAMRYTEARLSA 128 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 S LL ++ + T D++ NFD +L+EP +LP+R PN+L+NG+TGI+ G ATDIPPH+L E Sbjct: 129 ISAELLKDIEKDTVDFMLNFDDSLEEPVVLPSRFPNLLVNGSTGISSGYATDIPPHHLGE 188 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 V AAI ++ P +T+D L+ ++GPD+PT I ++K YE G+G + +R + Sbjct: 189 VIDAAIHHMEHPDSTVDDLMKHIKGPDFPTGGTI-QGVDGLKKAYETGKGKIVLRGKAEI 247 Query: 248 ED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 ED +VI+ +P++V+ A +++++ +KK+ + ++RD++D +V + + Sbjct: 248 EDVRGGKQQIVITEIPYEVNKANLVKRMDELRIDKKVDGIAEVRDDTDRTGLRIVVELKK 307 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRL 362 D ++++L+ TDL+ SY N+ I + P + L +L ++ +++ V RR Sbjct: 308 --EADSKGILHYLYKNTDLQVSYNFNMVAI-FNKTPKLLGLKHMLEAYINHQKEVVTRRT 364 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEAILE 419 + L K +R HI+EGL+ A +DEVI+ IR ++ + K L + TE QAEAI+ Sbjct: 365 KFDLNKAKERAHIVEGLIKAISILDEVIQTIRASKDKKDAKDRLQDMYQFTEPQAEAIVT 424 Query: 420 LKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSP 479 L+L L + + E SEL+K ++L+ IL+SE+ + N +K+EL+ + Y + RR+ Sbjct: 425 LQLYRLTNTDVTTLEEEASELKKLIEKLEAILSSEKNLINEIKRELKEIKKKYAEARRTV 484 Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGL---NYKAGDSFKAAVK 536 +++ E ++ ++PSE V + +++ G+V+ + A K D +++ Sbjct: 485 IEQEIEDLKINLEVVIPSEDVRVTVTKEGYVKRSSLRSYAASNGEPPGMKETDRLLYSLE 544 Query: 537 GKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLMES---DD 591 + ++ G + LP R + G+ + + + + + D Sbjct: 545 INTTDTLLLFTRKGSFLFLPVHQLPEIRWKDSGQHVANLVAMDNDDDILTAIPVKEFNDS 604 Query: 592 QKLLMASDAGYGFVCTFNDLVA-RNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAG 650 + +L A+ G ++ A RN + L ++ V+ V + D + + T G Sbjct: 605 EYVLFATKLGMVKKTVLSEYKAQRNSKALMAVKLKKDDEVIS-VTLSDGTHDIFFATHTG 663 Query: 651 RMLMFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKL 709 L F ++ + G K IN+ + + PP L + + K Sbjct: 664 YGLWFTEEEVSATGQRTAGVKAINLKKDDFVVSCMSFKEES--PPD--LFLVTQRAAYKK 719 Query: 710 RPEELQKVTGERGRRGTLMRGLQR 733 + + T R +++ L+R Sbjct: 720 MKLNVFEKTSRAKRGLVMLKELKR 743 >UniRef50_Q21V46 DNA topoisomerase IV subunit A n=83 Tax=Bacteria RepID=Q21V46_RHOFD Length = 796 Score = 737 bits (1903), Expect = 0.0, Method: Composition-based stats. Identities = 316/767 (41%), Positives = 448/767 (58%), Gaps = 55/767 (7%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGL-------NASAKF 60 L L + + AYL Y++ V+ RALP + DG KPVQRRI+Y+MS +GL N AK Sbjct: 24 LNLATYAQRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMSRMGLGFGGPNGNTGAKP 83 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KSAR VGDVLG++HPHGDS+ Y+A V MAQ FS RYPL+DG GN+G+ D AAMRY Sbjct: 84 VKSARIVGDVLGRFHPHGDSSVYDAAVRMAQDFSQRYPLIDGHGNFGSRDGDG-AAAMRY 142 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RL+K + LLL E+ +GT D++PN+DG+ QEP LPARLP LLNG +GIAVG+AT+I Sbjct: 143 TEARLAKITGLLLDEIDEGTVDFMPNYDGSTQEPSQLPARLPFNLLNGASGIAVGLATEI 202 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 P HNLREVA A IALI P+ + L ++ GPDYP +II+S +I + Y +GRGS++ Sbjct: 203 PSHNLREVADACIALIKSPQLSESDLFALIPGPDYPGGGQIISSAEDIAEAYRSGRGSLK 262 Query: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQ----MRNKK------------- 278 RA WK ED +V++ LP VS RVLE+I ++ K Sbjct: 263 CRARWKIEDLARGQWRLVLTELPPGVSTQRVLEEIEELSNPKVKAGKKALSLEQNQLKAT 322 Query: 279 -LPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR 337 L ++D +RDES + RLV P+++R+ +++ L A T LE S INL MIGLDGR Sbjct: 323 LLSVLDGVRDESSKDAAVRLVCEPKTSRISQQELITTLLAHTSLETSSPINLTMIGLDGR 382 Query: 338 PAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED 397 P K+L ++L+EW+ FR+ T+ RR +RL KVL R+HILEG + LNIDEVI IIR D Sbjct: 383 PTQKSLRQMLTEWIAFRQKTIERRSQHRLGKVLDRIHILEGRALVLLNIDEVIAIIRQAD 442 Query: 398 EPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKM 457 EPK AL++RF L++ QAE ILE++LR LA+LE +KI E + L E+ +L+ IL S + Sbjct: 443 EPKAALIARFHLSDRQAEDILEIRLRQLARLEAIKIEQELAGLRGEQQKLEEILGSPSAL 502 Query: 458 NNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKG-- 515 L+ KE++ADA+ + D RR+ +Q K + EPVT+V+SQ GWVR+ KG Sbjct: 503 RRLMIKEIEADAKTFADPRRTLIQ---AEKKAVLEVKVVDEPVTVVVSQKGWVRAQKGWA 559 Query: 516 -----HDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPL 570 + + ++KAGD+ + ++ ++ S GR Y++ LP ARG G+P+ Sbjct: 560 SERAANGVLPAEYSFKAGDALYDTFECRTVDTLLAFGSNGRVYSVAVALLPGARGDGQPM 619 Query: 571 TGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHV 630 T L L G + + LL++S GYGF+ + ++ +R +AGKA +T + Sbjct: 620 TSLLELEAGTQLLYYFAGPAPATLLLSSSGGYGFLASVENMTSRLKAGKAFVTCNAGEIL 679 Query: 631 MPPVVIEDAS--------DMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAAR 681 P + S + + GR+L F +S L ++ G+G +I++ + Sbjct: 680 CRPSPVAGGSGATPWPAATHVACASAGGRILTFEISQLKTMATGGRGLMLIDLEDKDRLA 739 Query: 682 GEDGLAQLYVLPPQSTLTIHVGK-RKIKLRPEELQKVTGERGRRGTL 727 G + + GK R L L RGR+G + Sbjct: 740 GACAYTRSVKIEGLGR----GGKPRDETLEIRSLNNARALRGRKGKV 782 >UniRef50_D2QWS9 DNA gyrase, A subunit n=5 Tax=Planctomycetaceae RepID=D2QWS9_9PLAN Length = 938 Score = 737 bits (1902), Expect = 0.0, Method: Composition-based stats. Identities = 253/753 (33%), Positives = 382/753 (50%), Gaps = 67/753 (8%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 + + + +YL Y+M VI+ RALP + DGLKP QRRI+ AM++L L A K A+ G Sbjct: 29 PIEDELKESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLTPGAPRVKCAKISG 88 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 D G YHPHG+S Y +V MAQ ++ R+ L+D QGN+G+ AAMRYTE+RLS Sbjct: 89 DTSGNYHPHGESVIYPTLVRMAQEWNMRHILIDKQGNFGSIAGLPP-AAMRYTEARLSPV 147 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 + ++L +L T D+VP +D QEP +LP R PN+L+NG GIAVGMAT IPPHNL EV Sbjct: 148 ASMMLEDLNLDTVDFVPTYDERNQEPTVLPCRFPNLLVNGAQGIAVGMATSIPPHNLGEV 207 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248 +A + +ID P+ TL +L +I++GPD+PT I RA IR+ Y +GR ++ +RA + E Sbjct: 208 CEALVKVIDDPEVTLGELCEIIKGPDFPTGGTI-CGRAGIRRGYRDGRSTIVLRAKTRIE 266 Query: 249 D-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 + ++I+ +P+Q + RV+E+IA + +++ + + D SD + P LVI + Sbjct: 267 EHKKDRYRIIITEIPYQQARDRVVEKIAELVNEERIKGISGITDLSDLKEPVHLVIDIKR 326 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLN 363 + D V+N L+ + L+ S I + + +DG+P +L E+L E+L R +RRR Sbjct: 327 D-ADPYVVLNQLYQFSPLQDSISI-ILLALVDGKPRELSLKELLEEFLRHRVTVIRRRTQ 384 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALM---------------- 404 + L K +R H +EGLL+A NIDE+I IIR E K LM Sbjct: 385 FLLSKARRRKHTVEGLLLALANIDEIIRIIRASRTQAEAKVGLMGVECPAAMMQRALGEE 444 Query: 405 ------------SRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILA 452 + LT Q+EAIL + L L LE+ ++ GE +EL KE + ILA Sbjct: 445 GFAMFQSERGASDTYRLTAVQSEAILRMTLGQLVNLEQERLGGEHAELLKEIAEYLRILA 504 Query: 453 SERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS 512 E + ++K+EL A A YGD+RR+ + EE ++ D++ E + + +S G+++ Sbjct: 505 DENIIRAMIKEELIAIAAKYGDERRTEISG-EEIGDVNLEDLITEETMVVSISHRGYIKR 563 Query: 513 AKGHDIDAP--------GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--S 562 A G + D ++ ++F + GR Y LP S Sbjct: 564 TPASTYRAQRRGGKGLKGAKTEDEDPIAHLFVASTHAYLLFFTNLGRVYWQKVYDLPELS 623 Query: 563 ARGQGEPLTGKLTLPPGATVDHMLMESD----DQKLLMASDAGYGFVCTFNDLVARNRAG 618 +G + L L G + + D L+MA+ G D + G Sbjct: 624 RESRGRAIVNLLNLSEGEKIAECIAIRDFDQQGHFLMMATRKGLVKKSPLEDYSRPKKGG 683 Query: 619 KALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSA 677 I L E+ V+ VV + D ++ T G + F SD + + G K I++ S Sbjct: 684 IIAIKLREDDEVVDVVVTKPG-DEVVLSTSTGMAIRFSESDARPMGRNTSGVKGISLASG 742 Query: 678 EAARGEDGLAQLYVLPPQSTLTIH----VGKRK 706 D L + V P +TL GKR Sbjct: 743 ------DSLVGMVVADPDATLLTVCENGYGKRT 769 Score = 44.9 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 2/79 (2%) Query: 567 GEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL--VARNRAGKALITL 624 G+ L T TV + D +++LM + G ++ + RN G +++L Sbjct: 837 GKGLRDIKTTTRNGTVIAVARVDDTEEVLMMTARGKLQRIAAREIKTIGRNTQGVRIMSL 896 Query: 625 PENAHVMPPVVIEDASDML 643 ++ ++ V + + Sbjct: 897 DDDDKLVAVVRVPRDEAEV 915 >UniRef50_UPI00016C558B DNA gyrase subunit A n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C558B Length = 883 Score = 735 bits (1899), Expect = 0.0, Method: Composition-based stats. Identities = 232/756 (30%), Positives = 386/756 (51%), Gaps = 65/756 (8%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 L + + ++YL Y+ VI+ RALP + DGLKP QRRI+ AM++LGL ++ K A + Sbjct: 26 LDIVDELRDSYLTYAQSVIISRALPDVRDGLKPSQRRILVAMNDLGLGPASSTSKCAGII 85 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 G+ + +YHPHGD++ Y+++V MAQ ++ RY LV GQGN+G+ AA RYTE+RL+ Sbjct: 86 GETMKRYHPHGDASIYDSLVRMAQDWNLRYRLVHGQGNFGSIAGLPP-AAHRYTEARLTP 144 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 + LL +L + T D++ N+DG +EP +LP + PN+L+NG+ GIAVGMAT IPPHNLRE Sbjct: 145 AAGELLEDLERDTVDFIDNYDGKYREPLVLPGKFPNLLVNGSDGIAVGMATHIPPHNLRE 204 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 V +A + L+D P TL L+ I+ GPD+PT II R + + Y G G + +RA + Sbjct: 205 VCKALVLLLDNPGATLADLIQIIPGPDFPTGG-IIMGRQGLLEAYARGAGKITLRARAQV 263 Query: 248 EDG------AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENP--TRLVI 299 + +++IS +P QV+ ++E+IA ++ +++P V +RDES N RL++ Sbjct: 264 MEEVKGRSPSILISEVPFQVTRNAIVEEIAHLVKEERIPDVSGVRDESSARNGEPVRLIV 323 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 + + D V+N L+ T L+K+ I + + +DGRP L E+L ++L R +R Sbjct: 324 EIKRGK-DPHLVLNQLYQYTKLQKTVSIIM-LALVDGRPRELTLKEMLQKFLDHRVHVIR 381 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALM------------ 404 RR + L + KR H+LEG L+A +I++VI+I R N E K L Sbjct: 382 RRTEFLLREAKKRGHVLEGQLIAIADIEQVIQICRTSPNRAEAKARLQGLAVPAALMQRA 441 Query: 405 ----------------SRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQ 448 + + +TE QAEA++ L+L LA LE +I E +L + + Sbjct: 442 IGEGAFAALQRELGAVAEYRMTEQQAEAVVNLRLGQLAALESEEILKEYLQLRELIRGYE 501 Query: 449 GILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMG 508 +L+ + ++ +++++L+ A YGDDR++ + ++ + D++ EP + +S G Sbjct: 502 TLLSDDANIHAVIREDLERMAAKYGDDRKTEV--SDDGGDVDMEDLIVDEPNVVTISHEG 559 Query: 509 WVRSAKGHDIDAP-------GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP 561 +V+ + + D + + ++ +TGR Y + +P Sbjct: 560 FVKRMALTEYRVQGRGGKGVQGGLRDNDFVEHFFVASTKAYLLCFANTGRMYWLKVYRIP 619 Query: 562 SA--RGQGEPLTGKLTLPPGATVDHMLM---ESDDQKLLMASDAGYGFVCTFNDLVARNR 616 +A G + L+L G + ++ + LLMA+ G + Sbjct: 620 TAGRTSPGRAIANVLSLAEGEKISSIVPVREFVEGAHLLMATRQGTVKKTDLMAYSNVRQ 679 Query: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIP 675 G ITL E ++ V + A+D ++ TQ G + F S + + + +G + I + Sbjct: 680 GGIIGITLDEGDELIN-VALTRANDEVVLSTQKGMAIRFRESAIRPMGRTARGVRGIKLG 738 Query: 676 SAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRP 711 +D L + V P L K P Sbjct: 739 K------DDALVGMVVADPDGLLLTVCENGYGKRTP 768 >UniRef50_Q9HJB6 DNA gyrase, subunit A (GyrA) related protein n=5 Tax=Thermoplasmatales RepID=Q9HJB6_THEAC Length = 796 Score = 735 bits (1897), Expect = 0.0, Method: Composition-based stats. Identities = 241/766 (31%), Positives = 409/766 (53%), Gaps = 35/766 (4%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + E+ A+ +YL Y+M VI+ RA+P + DGLKPVQRR++Y+M ELG+ +KK Sbjct: 3 IMEKRAVEVEIRKSYLEYAMSVIVSRAIPDVRDGLKPVQRRVLYSMRELGVTHDKPYKKC 62 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VG+ +GKYHPHGD A Y+A+V MAQ FS RYPLVDGQGN+G+ D S AAMRYTE+ Sbjct: 63 ARIVGETMGKYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDG-DSPAAMRYTEA 121 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 RL++ +E ++ ++ + T + NFDGTL EP+ LP+++PN+L+NG++GIAVGMAT++ PH Sbjct: 122 RLTQIAEDMMDDIDENTVPFRLNFDGTLSEPEYLPSKIPNLLINGSSGIAVGMATNMVPH 181 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL E+ A + +D + +D LL V+GPD+P + + I + Y GRG V ++ Sbjct: 182 NLTEICDAILYEVDHRDSPVDDLLKYVKGPDFPGGGIVFYGKDLI-EAYRTGRGKVIVQG 240 Query: 244 VWK-KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 ED ++I ++P+ V+ A +++ IA +N+ + + D++DESD R+VI R Sbjct: 241 EVDATEDRRLIIKSIPYGVNKADLVQSIADLAKNEVIKDITDIKDESDRNG-IRIVIKVR 299 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRL 362 + + V+N L+ T LE S I +N++ + +P + NL +++ ++ R D + RR Sbjct: 300 DDDIKP-LVLNQLYEHTALESSIGI-INLVLVGNQPKLMNLKDLIDSFIDHRLDVILRRS 357 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEAILE 419 +RL++ +RL +L G+L A +ID V+EI+++ + A L + F L + Q +AILE Sbjct: 358 QFRLDRKKERLDVLTGILTAVEHIDRVVEILKSSKDADEASSKLRNEFDLNDRQIKAILE 417 Query: 420 LKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSP 479 ++L+ L E+ +R E ++++ E L+ I+ SE + + KKE+ + YGD RRS Sbjct: 418 MRLQRLVNTEQESVRSEIAQIQAEIKDLEEIILSEDRRIDEFKKEITEIQKKYGDKRRSR 477 Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP-------GLNYKAGDSFK 532 ++ R + D++P+E I+LS G V+ + + + + K DS K Sbjct: 478 IKFRGIT-ERTMEDLIPNEESLIMLSYGGLVKRVQADEYRSQRRGGKGVNTSMKTSDSIK 536 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHMLMESD 590 + + S+ V + +TGR + +P S G L L G V ++ Sbjct: 537 SMIHCFSHDTVYYFTNTGRVFKSKAYEIPKKSRTSLGVSAAAFLKLAQGERVTEIMKAPP 596 Query: 591 DQ--KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQ 648 ++ L++ + G + + +G +ITL ++ ++ + ++ Sbjct: 597 EKGYYLILVTRDGSVKKTAADPVFDSKSSGLKIITLEDDDELVSVSYTA-GDKNMFVLSS 655 Query: 649 AGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKI 707 G+ +F S++ + + G + + + D + +V+ + K Sbjct: 656 KGKASVFNTSEIRETGRTSMGVRSMRLNEG------DTILTAFVVNSDEDILSISEKGYG 709 Query: 708 KLRPEELQKVTGERGRRGTLM-RGLQRIDRVEIDSPRRASSGDSEE 752 K + RG G ++ R +R RV P R D +E Sbjct: 710 KRTNISEFPIH-HRGSSGVMVYRDTERTGRVSHAIPVR----DEDE 750 Score = 73.0 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 30/225 (13%), Positives = 79/225 (35%), Gaps = 26/225 (11%) Query: 475 DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAG 528 +R + + + K I++++ G V+ + + + Sbjct: 586 ERVTEIMKAPPEKGY----------YLILVTRDGSVKKTAADPVFDSKSSGLKIITLEDD 635 Query: 529 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHML 586 D + ++ + + S G++ R G G + L G T+ Sbjct: 636 DELVSVSYTAGDKNMFVLSSKGKA---SVFNTSEIRETGRTSMGVRSMRLNEGDTILTAF 692 Query: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAH---VMPPVVIEDASDML 643 + + D+ +L S+ GYG ++ +R ++ + V + + D D + Sbjct: 693 VVNSDEDILSISEKGYGKRTNISEFPIHHRGSSGVMVYRDTERTGRVSHAIPVRD-EDEV 751 Query: 644 LAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLA 687 + ++ + + S++P+ S+ G K+++I + + Sbjct: 752 ILVSMNEKTIRIKASEIPETSRVTSGVKLMDIDGDDRVIAAAVIK 796 >UniRef50_O51396 DNA gyrase subunit A n=18 Tax=Borrelia burgdorferi group RepID=GYRA_BORBU Length = 810 Score = 734 bits (1896), Expect = 0.0, Method: Composition-based stats. Identities = 234/745 (31%), Positives = 412/745 (55%), Gaps = 43/745 (5%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 + + + + +YLNY+M VI+ RALP + DGLKPV RRI+Y+M E+GL + FKK+ R Sbjct: 12 NVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFKKAGRI 71 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VGDVLGKYHPHGD + Y+A+V +AQ FS RYP++ GQGN+G+ D AAMRYTE+++ Sbjct: 72 VGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDGDPP-AAMRYTEAKME 130 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 K +E ++ ++ + T ++ N+D +L EP+++P+ P +L+NG++GIAVGMAT++ PHNLR Sbjct: 131 KITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMAPHNLR 190 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 E+ A + ++D ++ LL IV+GPD+PT EI+ + I+ Y+ G+GSV +RA + Sbjct: 191 EICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLIK-AYKTGKGSVVIRARYH 249 Query: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 E+ A++++ +P+ V+ + +L ++A + +KL + D+RDESD E R+V+ Sbjct: 250 IEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREG-IRIVLEV 308 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 + D +MN L+ T+ +K + IN N+ ++G P NL E+L E++ R++ + RR Sbjct: 309 KR-GFDPHVIMNLLYEYTEFKKHFSIN-NLALVNGIPKQLNLEELLFEFIEHRKNIIERR 366 Query: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQAEAIL 418 + + L K ++ H+LEGL +A NIDEVI+II++ + + L+S FGL+E QA ++L Sbjct: 367 IEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDARERLVSNFGLSEIQANSVL 426 Query: 419 ELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRS 478 +++L+ L LE K+ E + L + IL + ++ N++++E +GD+RR+ Sbjct: 427 DMRLQKLTALEIFKLEEELNILLSLIKDYEDILLNPVRIINIIREETINLGLKFGDERRT 486 Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK--------AGDS 530 + EE S D++ E + ++L++ G+++ ++ G K GD Sbjct: 487 KIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDE 546 Query: 531 FKAAVKGKSNQPVVFVDSTGRSYAIDPITL--PSARGQGEPLTGKLTLPPGATVDHMLME 588 A+ ++ + + + G+ Y I+ + S +G+ ++ + L + + Sbjct: 547 IVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEILTIKNS 606 Query: 589 S---DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLA 645 DD LL+ + +G D A G +I L + V ++ + ++ Sbjct: 607 KDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVF-KDEKVIC 665 Query: 646 ITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHV-- 702 +++ G +F D+ ++G +G + + D ++ + L I Sbjct: 666 LSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEG------DLFVKVLSVKENPYLLIVSEN 719 Query: 703 --GKRKIKLRPEELQKVTGERGRRG 725 GKR + EL +RG G Sbjct: 720 GYGKRLNMSKISEL-----KRGATG 739 Score = 58.4 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 74/218 (33%), Gaps = 11/218 (5%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG------LNYKAGDSFKA 533 L ++EE + L + ++ + G + + D A + D + Sbjct: 594 LGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTS 653 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQK 593 A ++ V+ + G ++ + + +G + L G +L ++ Sbjct: 654 AEIVFKDEKVICLSKKGSAFIFNSRDV-RLTNRGTQGVCGMKLKEGDLFVKVLSVKENPY 712 Query: 594 LLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIE---DASDMLLAITQAG 650 LL+ S+ GYG + + R + ++ VV D +L +++ Sbjct: 713 LLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRS 772 Query: 651 RMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLA 687 + L + + K +G +++ + + + Sbjct: 773 KALRTVAGKVSEQGKDARGIQVLFLDNDSLVSVSKFIK 810 >UniRef50_A7HL65 DNA gyrase, A subunit n=4 Tax=Thermotogaceae RepID=A7HL65_FERNB Length = 823 Score = 732 bits (1891), Expect = 0.0, Method: Composition-based stats. Identities = 243/770 (31%), Positives = 427/770 (55%), Gaps = 34/770 (4%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 +++ ER+ L + +YL+YSM VI+ RA+P + DGLKPVQRRI+Y+M ELGL + FK Sbjct: 19 NNVFERV-LEDELVKSYLSYSMSVIIGRAIPDVRDGLKPVQRRIIYSMYELGLFHNKPFK 77 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K+AR VG+V+GKYHPHGDS+ YEA+V MAQP+ RY LV+GQGN+G+ D AAMRYT Sbjct: 78 KTARIVGEVMGKYHPHGDSSIYEALVRMAQPWLMRYSLVEGQGNFGSID-RDPPAAMRYT 136 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+RL K +E ++ ++ + T + NFDG+LQEP +LPA++PN+LLNG +GIAVGMAT+IP Sbjct: 137 EARLHKIAEEMVEDIDKQTVKMLDNFDGSLQEPDVLPAKVPNLLLNGASGIAVGMATNIP 196 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 HNL +V A IA I ++++L+DI++GPD+PT II ++ IR++Y G+G + Sbjct: 197 THNLNDVVDATIAYIKNRDISVEELIDIIKGPDFPTG-GIIIGKSGIREMYITGKGGFTI 255 Query: 242 RAVWKK----EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 R + + +++I+ +P+ +S A +++QIA ++ +++P V DLRDESD + + Sbjct: 256 RGKAEIKHEKKKKSIIITEIPYGISKAELIKQIADYLQEEEIP-VKDLRDESDKDGLRVV 314 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 + P V + ++N+L+ T+L+ + N +I D +P + NL +++ ++ R + Sbjct: 315 IEFP--EDVKEEVILNNLYQKTNLQTRFNANFLVIDGDKQPRLMNLKQLIEAYVKHRFEV 372 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQA 414 VR+R Y ++ KR HI+EGL+ A ID V+ IIR+ + A L+ ++E QA Sbjct: 373 VRKRTQYAYQQDSKRAHIVEGLIKASKAIDTVVSIIRSSKDSSEALSQLVDILQMSEEQA 432 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 +A+L+++L L LE ++ E +L ++ + +L ++ K+ ++ +EL+ + YGD Sbjct: 433 KAVLDMRLGRLTNLETQNLQQEYRDLLVRLEKEKELLMNDDKVYEVIIEELEEIKKKYGD 492 Query: 475 DRRSPLQEREE-AKAMSEHDMLPSEPVTIVLSQMGWV--------RSAKGHDIDAPGLNY 525 R++ + + EE A + D++P++ + I L++ G++ R+ + + G N Sbjct: 493 PRKTEITDLEETATKFDKKDLIPNKDIVITLTKKGFLKLMDIDAFRTQRRNGKGVIGANL 552 Query: 526 KAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVD 583 D + K + +F S G+ Y I+ + + + +G+P+ + L G V Sbjct: 553 MEDDIISQIIYSKLHSKTLFFTSLGKVYEIENLDIEESNRGTKGKPINKYIKLENGERVL 612 Query: 584 HMLMESDD-QKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM 642 M+ +D +L + G + D G IT + ++ + I S+ Sbjct: 613 AMVDITDYVGELFFVTKKGVVKRTSLEDFKNITSKGIRAITFKDGDELVSVLRINSESNT 672 Query: 643 LLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 +L T+ G + F + ++ + + G + I + G++ ++ + + Sbjct: 673 VLISTKLGMSIRFGIEEVRTMGRNAAGVRGIRLRE-----GDEVISSTVLENDNGYILTI 727 Query: 702 VGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 KL + ++ R G ++ + I++ +GD E Sbjct: 728 TENGYGKLTEVSDYR---KQSRDGLGIKNIGEIEKTGPIVGVAYVNGDEE 774 Score = 84.2 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 75/192 (39%), Gaps = 16/192 (8%) Query: 504 LSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDST-GRSYAID 556 +++ G V+ D + +K GD + ++ S V + + G S Sbjct: 627 VTKKGVVKRTSLEDFKNITSKGIRAITFKDGDELVSVLRINSESNTVLISTKLGMSIR-- 684 Query: 557 PITLPSARGQGEPLTGKLTL---PPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVA 613 + R G G + + ++E+D+ +L ++ GYG + +D Sbjct: 685 -FGIEEVRTMGRNAAGVRGIRLREGDEVISSTVLENDNGYILTITENGYGKLTEVSDYRK 743 Query: 614 RNRAGKALITLPENAHV--MPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGK-GNK 670 ++R G + + E + V + + ++ T+ G + F VSD+P S+ G K Sbjct: 744 QSRDGLGIKNIGEIEKTGPIVGVAYVNGDEEIVLFTKDGASIKFKVSDIPTRSRTAQGVK 803 Query: 671 IINIPSAEAARG 682 ++N+ + Sbjct: 804 VMNLADGDIVAD 815 Score = 49.1 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 35/251 (13%), Positives = 87/251 (34%), Gaps = 36/251 (14%) Query: 421 KLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNL----LKKELQADAQAYGDDR 476 K+ + L+ + K ++ + ER + + EL + G + Sbjct: 578 KVYEIENLDIE--ESNRGTKGKPINKYIKLENGERVLAMVDITDYVGELFFVTKK-GVVK 634 Query: 477 RSPLQERE-------------EAKAMSEHDMLPSEPVTIVLS-------QMGW--VRSAK 514 R+ L++ + + + + SE T+++S + G VR+ Sbjct: 635 RTSLEDFKNITSKGIRAITFKDGDELVSVLRINSESNTVLISTKLGMSIRFGIEEVRTMG 694 Query: 515 GHDIDAPGLNYKAGDSFKAAVKGKS-NQPVVFVDSTG--RSYAIDPITLPSARGQGEPLT 571 + G+ + GD ++ ++ N ++ + G + + S G G + Sbjct: 695 RNAAGVRGIRLREGDEVISSTVLENDNGYILTITENGYGKLTEVSDYRKQSRDGLG--IK 752 Query: 572 GKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRA--GKALITLPENAH 629 + + + + D+++++ + G +D+ R+R G ++ L + Sbjct: 753 NIGEIEKTGPIVGVAYVNGDEEIVLFTKDGASIKFKVSDIPTRSRTAQGVKVMNLADGDI 812 Query: 630 VMPPVVIEDAS 640 V VI Sbjct: 813 VADFAVIGGEE 823 >UniRef50_A9F3U1 DNA gyrase subunit A n=3 Tax=Myxococcales RepID=A9F3U1_SORC5 Length = 800 Score = 732 bits (1890), Expect = 0.0, Method: Composition-based stats. Identities = 270/752 (35%), Positives = 403/752 (53%), Gaps = 48/752 (6%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM-SELGLNASAKFKKSARTV 67 +L + + YLNY++ VI RALP + DGLKPVQRRI+YAM +L L AK++KSA V Sbjct: 37 SLADEAQRRYLNYALSVITSRALPDVRDGLKPVQRRILYAMLHDLHLGPDAKYRKSAAVV 96 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 GDV+GKYHPHGD A Y+AMV +AQ F R PL+ G GN+G+ D + AAMRYTE++L Sbjct: 97 GDVMGKYHPHGDVAIYDAMVRLAQDFVMRAPLIAGHGNFGSVDG-DAPAAMRYTEAKLRP 155 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 + LLSELGQ T D+ PN+DGT EP +LP+R PN+L+NG+ GIAVGMAT IPPHNL E Sbjct: 156 LALELLSELGQRTVDFRPNYDGTRFEPIVLPSRFPNLLVNGSQGIAVGMATSIPPHNLGE 215 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 V A +ALI+ + T +LL V+GPD+PT ++ ++ E+ +Y G+GS+++R W+ Sbjct: 216 VIDACVALIENRELTTHRLLSYVKGPDFPTGGQLHATKKELEAVYTAGQGSLKLRGEWQL 275 Query: 248 EDG--------AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 E+G +VI+++P+ + ++E+IA + +KKLP + D+RDES R+V+ Sbjct: 276 EEGDGKRGAAPQIVITSIPYGIERKAIVEKIAEVILSKKLPTLVDVRDES--TGEVRIVM 333 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINL-NMIGLDG----RPAVKNLLEILSEWLVFR 354 + D VM +L+ T L + ++NL ++ D P L EIL+++L FR Sbjct: 334 ELKRG-ADAQLVMAYLYKQTPLAINVQVNLTCLVPTDNAEIAAPRRLGLHEILTKFLDFR 392 Query: 355 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTE 411 TV RRL + L ++ +R+ ILEG F +DEVI IIR + + LM RF L E Sbjct: 393 YATVTRRLEFELGELRRRITILEGFEKIFDALDEVIRIIRKSEGKADAAEKLMKRFTLNE 452 Query: 412 TQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQA 471 Q +AILELKL LA+LE + ++ + E E +++G+L S+ K +++ EL + Sbjct: 453 EQTDAILELKLYRLARLEILLVQKDLGEKRAEAKRIEGLLRSDAKRWGIVRDELVEIKGS 512 Query: 472 YGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSF 531 YG+ RR+ + + D + +E ++LS GWV+ D + GDS Sbjct: 513 YGEKRRTKVVGSIDEPEYQAEDFIVAEDANVILSAQGWVKRV-REVKDLASTRIREGDSV 571 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHML----- 586 AAV G + V F + G Y +P + G G+P+ L G + ++ Sbjct: 572 LAAVAGSTRSTVAFFSNLGACYVCRIHDVPQSTGYGDPVQKLFKLADGERLIALMSFDPR 631 Query: 587 -----------MESDDQKLLMASDAGYGFVCTFN-DLVARNRAGKALITLPENAHVMPPV 634 E + L + G GF + R+G+ L E V+ Sbjct: 632 ALDVPAQTPDSAEPEPPFALAITRGGLGFRFSLRPHRDPSTRSGRRFAKLNEGDEVLFVH 691 Query: 635 VIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLP 693 + D +D +L + L V +L LS GKG+ ++ + E G L Sbjct: 692 AV-DGADRVLCASSDAWALSVAVEELALLSGPGKGSVVMRVAEGERLVG-----AALALG 745 Query: 694 PQSTLTIHVGKRKIKLRPEELQKVTGERGRRG 725 P +T+ K K K+ G+RG +G Sbjct: 746 PSDVITVETEKG--KTLEIAASKIAGQRGTQG 775 >UniRef50_C0ZEN0 DNA topoisomerase IV subunit A n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZEN0_BREBN Length = 847 Score = 731 bits (1888), Expect = 0.0, Method: Composition-based stats. Identities = 222/766 (28%), Positives = 383/766 (50%), Gaps = 35/766 (4%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 +S+ + E + +Y+ VI+ RA+P DGLKPVQRRI+YAM + G + Sbjct: 2 LSNQIINQSFAEIMGKRFGDYANLVILSRAIPDARDGLKPVQRRILYAMYQEGNTNDKPY 61 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 +KSA+TVG V+G YHPHGDSA YE MV MAQ + R L+ G GN+G+ D AAMRY Sbjct: 62 RKSAKTVGYVMGTYHPHGDSAIYETMVRMAQWWKMRQVLIQGHGNFGSLDADPP-AAMRY 120 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TESRLS + LL ++ + T ++PN+D + Q+P +LP+R PN+L+NG GIAVG ATDI Sbjct: 121 TESRLSALANELLRDIEKDTVTFIPNYDNSAQQPAVLPSRFPNLLVNGAAGIAVGFATDI 180 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 P HNL EV AA+A + P +LD+L+ V+GPD+PT I+ + IRK +E GRG Sbjct: 181 PTHNLGEVIDAAVAQMKNPNISLDELMQHVKGPDFPTGG-IVQGLSGIRKAFETGRGQFI 239 Query: 241 MRAVWKKED------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHEN- 293 +R E+ +V+S +P++V ++++ QI + +K+ +RDE+ + Sbjct: 240 IRGKTHVEEPKGGKIKKIVVSEIPYEVVKSKLVGQIDELVMERKIEGALAVRDETGRKEA 299 Query: 294 ---PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEW 350 R+V+ R D ++N+L+ TDL+ Y N+N+I +G L +L + Sbjct: 300 EQKKVRIVVDIRK-EADEQAILNYLYKNTDLQIYYNYNMNVI-HEGTIRQMGLKALLGAY 357 Query: 351 LVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRF 407 + +++ V R Y L++ R HI+EGL+ A + ++++ I + + + K +M ++ Sbjct: 358 IDHQKEVVTNRCQYDLDRKQSREHIVEGLIRAKSILRQIVDTIMDSEDRADAKKNIMEKY 417 Query: 408 GLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQA 467 G T+ QA+AIL ++L L +L+ +K+ E + L KE ++L+ ILASE+K+ ++ EL Sbjct: 418 GFTDNQADAILSIQLASLTRLDIVKLEKELATLAKEIEELKSILASEKKLIQVITGELNE 477 Query: 468 DAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNY-- 525 + Y ++R + +Q E + + +E + L+ G+++ + G Sbjct: 478 IKKKYAEERLTEIQGEIEEIKIDIAMQINAEDCIVTLTNEGYIKRTSPRSFKSVGGTLET 537 Query: 526 ---KAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGA 580 K GD + ++ ++ +F G+ +A P + + G L + L Sbjct: 538 CGVKEGDRVRYFMETNTSHTALFFTQDGKYFATLVNAFPDDKWKDIGSALVNIIPLEKNQ 597 Query: 581 TVDHMLMESDDQKLLM---ASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIE 637 + + + ++ L S G ++ + L V + Sbjct: 598 RIVGFTIVENFKQPLYVYHVSKNGLMKKTALSEYETNRSSALVAAKLKGGDDEFMNVFVA 657 Query: 638 DASDMLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVLPPQS 696 D + +L T+ G + F S++ + G K I + A G+D + L + S Sbjct: 658 DEAGAILGATKDGMGIRFQRSEVSATGRASSGVKAIAL-----APGDDVITMLPIEEVDS 712 Query: 697 T-LTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDS 741 ++ + +K R +G + ++ + E+ + Sbjct: 713 RAFSLLTAEGVVKRTAIGAIP-LQARAGKGVQLIRKRKNNPHELVA 757 >UniRef50_C8PKZ3 DNA gyrase, A subunit n=2 Tax=Campylobacter RepID=C8PKZ3_9PROT Length = 914 Score = 730 bits (1886), Expect = 0.0, Method: Composition-based stats. Identities = 227/656 (34%), Positives = 377/656 (57%), Gaps = 27/656 (4%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 + + E + +YL+YSM VI+ RALP DGLKPV RRI+YAM++LG+ + +KKSAR V Sbjct: 14 IDVEESIKTSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRQPYKKSARIV 73 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 GDV+GKYHPHGD+A Y+A+V MAQ FS R P VDGQGN+G+ D AAMRYTE+R++ Sbjct: 74 GDVIGKYHPHGDTAVYDALVRMAQSFSMRIPSVDGQGNFGSIDGDG-AAAMRYTEARMTP 132 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 +E LL +L + T D+VPN+D +L EP +LPAR+PN+LLNG++GIAVGMAT+IPPH+L E Sbjct: 133 LAEELLKDLDKETVDFVPNYDESLNEPDVLPARVPNLLLNGSSGIAVGMATNIPPHSLDE 192 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 + + L++ +L++++ ++GPD+PT II + I + Y+ GRG V++RA Sbjct: 193 LVGGLLILLENKNASLEEIMGEIKGPDFPTGG-IIYGKKGIIEAYKTGRGRVKIRAKTHI 251 Query: 248 EDGA----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 E A +VI LP+Q + AR++EQIA ++ K++ + ++RDESD + R+VI + Sbjct: 252 EKKASKDVIVIDELPYQTNKARLIEQIADLVKEKQIEGISEVRDESDRDG-IRVVIELKR 310 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLN 363 + + + V+N+LF T +E ++ + + I P + L+E+L +L R+ + RR Sbjct: 311 DAMS-EIVLNNLFKQTTMEATFGVIMLAID-GKEPKIFTLIELLKLFLNHRKTVIIRRTI 368 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAEAILEL 420 + L+K R HILEGL +A NIDEVI++IRN + + LMSRF L+E Q+ AIL++ Sbjct: 369 FELQKARARAHILEGLKIALDNIDEVIDVIRNSADTNVARENLMSRFDLSEAQSGAILDM 428 Query: 421 KLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPL 480 +L L LE KI E E+ E +L IL SE + ++K EL + R + + Sbjct: 429 RLSRLTGLEREKIEEELKEILAEIKRLDAILKSEELIEGIIKDELLEIKDKFKCPRITEI 488 Query: 481 QEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK--------AGDSFK 532 + E + + ++ +E + + ++ G+++ + K D + Sbjct: 489 VDDYEDIDIED--LIANENMVVTITHRGYIKRVPSKTYEKQKRGGKGRVAVTTYDDDFIE 546 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLMESD 590 + ++ ++F+ G+ Y + +P +G+ + + L + ++ +D Sbjct: 547 SFFTSNTHDTLMFITDRGQLYWLKVYKIPEGSRTAKGKAVVNLIQLGADEKIMAIIPTTD 606 Query: 591 ---DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDML 643 + L+ + G ++ G I+L E+ ++ ++ ++++ + Sbjct: 607 FDPSKSLVFFTRNGIVKRTNLSEFKNIRSLGIRAISLDEDDTLVTALIAPNSAEEM 662 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 61/150 (40%), Gaps = 9/150 (6%) Query: 538 KSNQPVVFV-DSTGRSYAIDPITLPS--ARGQGEPLTGKLTLPPGATVDHMLMESDDQKL 594 +N+ ++F+ G + + +G + + SD Q++ Sbjct: 716 STNENMLFIATKKGMCLKFNLNKIRQMGRIARGVKGIKFKE-KGDEVIGAAFILSDMQEI 774 Query: 595 LMASDAGYGFVCTFNDLVARNRAGKALITLP---ENAHVMPPVVIEDASDMLLAITQAGR 651 L S G G T ++ NR GK +I + ++ V++++ D L+A+T +G+ Sbjct: 775 LSVSQKGIGKRTTASEYRLTNRGGKGVICMKLTNRTGELIGVVMVDEEMD-LMALTTSGK 833 Query: 652 MLMFPVSDLPQLSK-GKGNKIINIPSAEAA 680 M+ + + + + G ++N+ + Sbjct: 834 MIRVDMQSIRKAGRNTSGVIVVNVEGDDVV 863 Score = 49.9 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 42/123 (34%), Gaps = 2/123 (1%) Query: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGK-ALITLPENAHVMPPVVIEDASDMLLAITQ 648 ++ ++ + GY + R GK + + + + D L+ IT Sbjct: 503 NENMVVTITHRGYIKRVPSKTYEKQKRGGKGRVAVTTYDDDFIESFFTSNTHDTLMFITD 562 Query: 649 AGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKI 707 G++ V +P+ S+ KG ++N+ A + P +L + Sbjct: 563 RGQLYWLKVYKIPEGSRTAKGKAVVNLIQLGADEKIMAIIPTTDFDPSKSLVFFTRNGIV 622 Query: 708 KLR 710 K Sbjct: 623 KRT 625 >UniRef50_B2URM6 DNA gyrase, A subunit n=5 Tax=Verrucomicrobia RepID=B2URM6_AKKM8 Length = 873 Score = 729 bits (1882), Expect = 0.0, Method: Composition-based stats. Identities = 236/813 (29%), Positives = 382/813 (46%), Gaps = 81/813 (9%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 ++ + + + ++L+YSM VI+ RALP + DGLKP QRRI+YAM EL L+ K + Sbjct: 3 NNRIKPVDVASELSTSFLDYSMSVIISRALPDVRDGLKPSQRRILYAMKELNLSPGGKTR 62 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K ++ VGD +G YHPHGD+A Y +V MAQ +S R LV GQGN+G PD AA RYT Sbjct: 63 KCSKIVGDTMGNYHPHGDAAIYGTLVNMAQDWSMRDILVIGQGNFGTPDGDPPAAA-RYT 121 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E++LS L+++L + T D+VP +D EP + P+ PN+L+NG TGIAVGMAT++P Sbjct: 122 EAKLSGMGVALMADLDKDTVDFVPTYDNEHTEPTVFPSAFPNLLVNGGTGIAVGMATNMP 181 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNL EV A+ID P T+++L ++GPD+PT +++ + I + GRGSVR+ Sbjct: 182 PHNLGEVVDGICAVIDNPHMTVEELRQYIKGPDFPTGGDVL-GFSGIDNYFRTGRGSVRI 240 Query: 242 RAVWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 R E ++I +P+ V+ A + E+IA ++K L + +RD SD + Sbjct: 241 RGKIDMEVTDSGKDLLIIREVPYGVNRAALQERIAELYKDKILTDISGIRDLSDEKTC-- 298 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 + + VMN L+ T +E S+ +N+ I D RP +++ ++ ++ RR+ Sbjct: 299 -IEIELKRDARPQVVMNQLYKLTSMETSFAVNMLAI-HDNRPKTLAMMDAINFYIEHRRE 356 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMS-------- 405 V RR Y L K LE L+A ++D+ I IIR N DE + L + Sbjct: 357 VVVRRTRYLLGDAEKDAERLEAFLLALHHMDDFISIIRDSKNRDEARERLQNYTFSTQTA 416 Query: 406 ----------------RFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQG 449 R+ TE Q +IL+L+L L LE KI GE +EL Sbjct: 417 ESLGILIRSQASIQGDRYVFTERQVNSILDLRLYQLTALENDKISGEYAELLVRIKDYLD 476 Query: 450 ILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGW 509 ILA+E ++ ++K EL+A Y R + + + M+ D++P++ + + ++ G+ Sbjct: 477 ILANESRVLGIVKDELKAIKDKYATPRVTRII--PFSGDMAIEDLIPNDTMIVTITHSGY 534 Query: 510 VRSAKGHDIDAPGLNYK--------------AGDSFKAAVKGKSNQPVVFVDSTGRSYAI 555 ++ + K D + +++ ++F +TGR Y Sbjct: 535 IKRTNSAEYRVQARGGKGVKAATTRGAKKDAEADFIEHLFAAQNHDYLMFFTNTGRVYVD 594 Query: 556 DPITL--PSARGQGEPLTGKLTLPPGATVDHMLM--------------ESDDQKLLMASD 599 + + QG + L L P + +L ++ A+ Sbjct: 595 RVYEIDEAARSAQGRNIKNLLDLQPEEAIAAILRLERRVDEKGNDITFAEGSGNVVFATK 654 Query: 600 AGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD 659 G + ND +AG I L E ++ + +D ++ +T G + FP D Sbjct: 655 DGTVKKTSLNDFANYRKAGIIAINLEEGNSLVNAEL-TSGADEIVLVTHDGMSIRFPEED 713 Query: 660 LPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVT 718 L + G + I R D + L ++ PQ TL + K + + Sbjct: 714 LRTQGRNTIGVRGIR------PRAGDYVVALAIVDPQKTLLVASENGLGKRTSFDEYR-- 765 Query: 719 GERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 +GR GT ++ + D+ S + E Sbjct: 766 -TQGRGGTGIKTMNCTDKTGKVVSATVVSDEDE 797 Score = 76.8 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 80/199 (40%), Gaps = 16/199 (8%) Query: 501 TIVLSQMGWVRSAKGHDIDAPG------LNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYA 554 + ++ G V+ +D +N + G+S A +V V G S Sbjct: 649 VVFATKDGTVKKTSLNDFANYRKAGIIAINLEEGNSLVNAELTSGADEIVLVTHDGMSIR 708 Query: 555 IDPITLPSARGQGEPLTGKLTLPP--GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLV 612 L R QG G + P G V + + + LL+AS+ G G +F++ Sbjct: 709 FPEEDL---RTQGRNTIGVRGIRPRAGDYVVALAIVDPQKTLLVASENGLGKRTSFDEYR 765 Query: 613 ARNRAGKALITL---PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKG-KG 668 + R G + T+ + V+ V+ D D L+ +T AG+ + V+ + + + +G Sbjct: 766 TQGRGGTGIKTMNCTDKTGKVVSATVVSD-EDELMLMTTAGQSVRIKVATVRETGRATQG 824 Query: 669 NKIINIPSAEAARGEDGLA 687 K++ + E+ + + Sbjct: 825 VKLMTLNEGESIQDISIVI 843 >UniRef50_Q2NJM2 DNA gyrase subunit A n=5 Tax=Candidatus Phytoplasma RepID=Q2NJM2_AYWBP Length = 835 Score = 728 bits (1880), Expect = 0.0, Method: Composition-based stats. Identities = 226/748 (30%), Positives = 390/748 (52%), Gaps = 32/748 (4%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + + L E + ++L+Y+M VI+ RALP I DGLKPVQRRI+Y+M ELG+ + A +KK+ Sbjct: 21 KIQEVNLSEEMKKSFLSYAMSVIVSRALPDIKDGLKPVQRRILYSMKELGVYSHASYKKA 80 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VGDV+GKYHPHGDS+ YEAMV MAQ FSYRYPLVDG GN+G+ D K AAMRYTE Sbjct: 81 ARVVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGHGNFGSIDGDK-AAAMRYTEV 139 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 +++K + L+ + + T D+V N+DGT +EP +LP LPN+L+NG TGIAVGMAT IP H Sbjct: 140 KMAKMAMELIKNIDKETIDFVDNYDGTEKEPLVLPTALPNLLINGATGIAVGMATKIPTH 199 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL EV I I+ ++D+L+ ++GPD+PT E++ ++ Y G+G+V ++A Sbjct: 200 NLGEVIDGLINYINNKDISIDELMQHIKGPDFPTGGELL-GLQSLKSAYHTGQGAVILKA 258 Query: 244 V----WKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 ++ +++++ +P+QV ++E+IA ++NK + + DLRDES + ++VI Sbjct: 259 KSHVLEERGKTSIIVTEIPYQVKKTDLIEKIAFLVKNKIVEGITDLRDESSRKG-MKIVI 317 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 + + + ++N L+ + L S+ IN+ + + P + +L +IL + FR + + Sbjct: 318 ELKRD-ANAKIILNKLYKHSQLRISFGINM-VALVGKTPQLVSLKQILEAFFNFRIEVIN 375 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEA 416 R+ ++ L+K R H++ L+ +I+ I++I+ + K A LM ++ E Q++A Sbjct: 376 RQKSFELKKASARKHLVTALITILEDIEIAIKLIKTSTDVKEAQRKLMQKYNFDEIQSKA 435 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDR 476 ILE+ L+ L+ E K+ E+ L +E + + I+ S++K +L+KEL + Y DDR Sbjct: 436 ILEMSLQRLSNQETQKLITEEKNLTQEILECKSIIDSQKKKERILEKELLEMKKKYQDDR 495 Query: 477 RSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS--------AKGHDIDAPGLNYKAG 528 ++ L + + D++ +P+ I ++ G+++S K G+ Sbjct: 496 KTTL-NFDAPLNFEDEDLIEKKPIIITITNKGYIKSMDIDTYKQQKRGGQGVSGMKIYEE 554 Query: 529 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHML 586 D + ++ +F + G+ Y + +P + +G L L + Sbjct: 555 DFIEHLAITSTHDYHLFFTNKGKVYQLKGYEIPLGQRQSKGSHLVNFLPFEKDEFLTSFT 614 Query: 587 MESD----DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM 642 + L A+ G + ++ G I L EN V+ Sbjct: 615 SIKNFDQSQDYLFFATKKGIVKKTPLKEYSHISKRGLIAIRLKENDEVLTVKKTT-GIKN 673 Query: 643 LLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 ++ + G + F + + +S+ G + + S E G A V + + + Sbjct: 674 IILASNNGNAICFCETKIKSISRNSMGVIGMRLGSDEFLVGA---ALFDVDSKEQNILVM 730 Query: 702 VGKRKIKLRPEELQKVTGERGRRGTLMR 729 K+ ++ G+ ++ Sbjct: 731 TENGFGKITNVNQYRIQARSGKGSKTIK 758 Score = 59.9 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 29/200 (14%), Positives = 71/200 (35%), Gaps = 14/200 (7%) Query: 505 SQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPI 558 ++ G V+ + + K D K + ++ + G + Sbjct: 630 TKKGIVKKTPLKEYSHISKRGLIAIRLKENDEVLTVKKTTGIKNIILASNNGNAICFCET 689 Query: 559 TLPSARGQGEPLTGKLTLPPGATVDHMLMESD--DQKLLMASDAGYGFVCTFNDLVARNR 616 + S + G V L + D +Q +L+ ++ G+G + N + R Sbjct: 690 KIKSISRNSMGVIGMRLGSDEFLVGAALFDVDSKEQNILVMTENGFGKITNVNQYRIQAR 749 Query: 617 AGKALITLPENAH---VMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK--GKGNKI 671 +GK T+ N ++ V+ + D L+ + G+++ + + + +G +I Sbjct: 750 SGKGSKTIKVNDQKGRLITLQVVLPSDD-LIVSSDKGQVVRVAIDQITKTKNKATQGTRI 808 Query: 672 INIPSAEAARGEDGLAQLYV 691 I + + A + + + Sbjct: 809 IKLKTGHKAVSVAVVKKEVL 828 >UniRef50_B8BXG7 DNA topoisomerase IV, ATP/GTP binding site n=1 Tax=Thalassiosira pseudonana RepID=B8BXG7_THAPS Length = 820 Score = 726 bits (1874), Expect = 0.0, Method: Composition-based stats. Identities = 247/777 (31%), Positives = 407/777 (52%), Gaps = 59/777 (7%) Query: 19 LNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHG 78 + Y++ +I+ RALP DG+KPV RRI+YAM+ LGL+ S ++K AR VG+VLGKYHPHG Sbjct: 1 MQYALSIILGRALPDARDGMKPVHRRILYAMNGLGLSPSGSYRKCARVVGEVLGKYHPHG 60 Query: 79 DSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY-SELLLSELG 137 D+A Y+A+V +AQPFS PL+DG GN+G+ D AAMRYTE RL++ +E LL ++ Sbjct: 61 DTAVYDALVRLAQPFSTNIPLIDGHGNFGSID-NDPAAAMRYTECRLTRIAAETLLDDIL 119 Query: 138 QGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALID 197 T +++PNFDG+ EP +LPA++P +LLNG GIAVGMAT++PPHNL E+ A +AL Sbjct: 120 MDTVEFLPNFDGSEYEPSVLPAKVPILLLNGGAGIAVGMATNVPPHNLGELMDACVALTK 179 Query: 198 -----QPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED--- 249 + T +LL I+ PD+PT A II ++ R +Y G G V MRAV E+ Sbjct: 180 GRNEGGEEVTDGKLLQIIPAPDFPTGACII-GKSGSRSLYTTGNGGVVMRAVMHLEEVPT 238 Query: 250 ---------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 A++++ LP+QV+ A +LE+IA + KKL + DLRDESD + R+VI Sbjct: 239 SSGKKKSTRNAIIVTELPYQVNKAALLERIAILVNEKKLEGIADLRDESDRDG-IRMVIE 297 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVR 359 + + V V N+L T L+ ++ N + G P L E L +L FR T+R Sbjct: 298 LKRDAV-AAVVQNNLLKKTSLQTTFSGNFLALFGGGTNPQRFTLREALDCFLDFRFQTIR 356 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMS----RFGLTET 412 + ++L+KV R HI+ GLL+A + DEVI I+RN + + ALMS + GL+ Sbjct: 357 NKCAFQLDKVENRAHIVAGLLIALESTDEVIAIVRNAPDQASARAALMSTDNPKLGLSSA 416 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QA+A+L+L+L L +L K+ E+ L++ + L+ +L ++ + + + +E A + + Sbjct: 417 QADAVLKLQLGQLTRLNGDKLNDEKKTLDESQTNLRNLLTNDAAVRDTMLEEFMAMKKRF 476 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK------ 526 G R++ + EE K ++ D++ +E IV+++ G+++ ++ + Sbjct: 477 GTPRKTKILPDEEDK--ADIDLVQNERSVIVVTRGGYIKRMPLKTFESQNRGTRGKRGTS 534 Query: 527 ----AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGA 580 ++ + V+ +G +Y + +P +G P+ L + Sbjct: 535 NTISDDNAVAHCFTCNDHDTVLMTTQSGVAYGLRAYQVPEGGRTARGAPIPSVLPVKSDD 594 Query: 581 TVDHMLMESD---DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIE 637 + +L S+ ++ +++A++ G+ + G + TL + + Sbjct: 595 VITSVLPVSEFSKNEFIVLATEYGWIKKTPLAAFEKLTQRGLIIATLADGDRLNWCEKCT 654 Query: 638 DASDMLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVLPPQS 696 D D+L+ T+ G+ F +DL ++ +G K + + D +A + VL + Sbjct: 655 DNDDILVGSTR-GQATRFKAADLRPTARTSRGVKSMTLKKG------DTIADMNVLRKED 707 Query: 697 TLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQ--RIDRVEIDSPRRASSGDSE 751 + V R + T RG G + + R+D + S R + D E Sbjct: 708 KFVLVVTTEGYGKRVLTEEFRTTARGGSGVIAIKFKAGRVD--DRISTMRVVNEDDE 762 Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 78/212 (36%), Gaps = 21/212 (9%) Query: 499 PVTIVLSQMGWVRSA------KGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRS 552 ++ ++ GW++ K GD K N ++ + G++ Sbjct: 609 EFIVLATEYGWIKKTPLAAFEKLTQRGLIIATLADGDRLNWCEKCTDNDDILVGSTRGQA 668 Query: 553 YAIDPITL-PSAR-GQGEPLTGKLTLPPGATVDHMLME-SDDQKLLMASDAGYGFVCTFN 609 L P+AR +G +TL G T+ M + +D+ +L+ + GYG Sbjct: 669 TRFKAADLRPTARTSRG---VKSMTLKKGDTIADMNVLRKEDKFVLVVTTEGYGKRVLTE 725 Query: 610 DLVARNR--AGKALITLPEN--AHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 665 + R +G I + + + + D +L IT G ++ VSD+ + Sbjct: 726 EFRTTARGGSGVIAIKFKAGRVDDRISTMRVVNEDDEILLITSQGVIVRQKVSDISCQGR 785 Query: 666 GK-GNKIINIPSAEAARGEDGLAQLYVLPPQS 696 G + + R D ++ + ++P + Sbjct: 786 AATGVLVQKVD----VRSGDSISTVSIVPKED 813 >UniRef50_C9Z0I9 GyrA-like gyrase subunit n=9 Tax=Actinomycetales RepID=C9Z0I9_STRSW Length = 818 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 252/750 (33%), Positives = 383/750 (51%), Gaps = 43/750 (5%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 + + + + ++L Y+ VI RALP DGLKPV RRIVY M+E+GL + K AR V Sbjct: 22 IDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPDRGYVKCARVV 81 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 G+V+GK HPHGDS+ Y+A+V +AQPFS R PLVDG GN+G+ + AAMRYTE R++ Sbjct: 82 GEVMGKLHPHGDSSIYDALVRLAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYTECRMAD 141 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 + L+ + + T D+ PN+DG QEP LPA PN+L+NG +GIAVGMAT++PPHNL E Sbjct: 142 ATSLMTESIEENTVDFSPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMATNMPPHNLGE 201 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 V AA LI P LD L+ V GPD PT I+ + IR Y GRG+ ++RA Sbjct: 202 VIAAARHLIRYPNADLDTLMKHVPGPDLPTGGRIV-GLSGIRDAYATGRGTFKIRATVTV 260 Query: 248 ED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 ++ ++++ LP V +V+ +I + KKL + D++D +D + RLVI + Sbjct: 261 DNVTARRKGLIVTELPFTVGPEKVIAKIKDLVGAKKLQGIADVKDLTDRAHGLRLVIEIK 320 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRL 362 + V + V+ L+ T +E+S+ IN N+ +DG+P L E+L +L R + VRRR Sbjct: 321 NGFV-PEAVLEQLYKLTPMEESFGIN-NVALVDGQPLTLGLKELLEVYLDHRFEVVRRRS 378 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEAILE 419 +R K RLH++EGLL A ++IDEVI +IR N + K L+ RF L++ Q + IL+ Sbjct: 379 EFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSDNSAQAKERLIERFALSDIQTQYILD 438 Query: 420 LKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSP 479 LR L + + +++ E+ +L E +L IL S+ ++ L+ EL A A+ +G +RR+ Sbjct: 439 TPLRRLTRFDRIELESEKEKLNTEIAELTRILESDAELRKLVSGELAAVAKKFGTERRTV 498 Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSA---KGHDIDAPGLNYKAGDSFKAAVK 536 L E + + + +P ++LS G + + D G K D +AV Sbjct: 499 LLESSGTQVAAVPLQVADDPCRVLLSSTGLLARTASAEPFTADEDGRRTK-HDVIVSAVP 557 Query: 537 GKSNQPVVFVDSTGRSYAIDPITLPS--------ARGQGEPLTGKLTLPPGATVDHMLME 588 + V V STGR ++ + LP G PL LTL G T+ LM Sbjct: 558 ATARGEVGAVTSTGRLLRLNVVDLPQLPDTSAAPNLSGGAPLAEFLTLQDGETLV-CLMT 616 Query: 589 SDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQ 648 D+ +A G V N+ +I+L E ++ V + + L+ IT Sbjct: 617 LDESSPGLAIGTEQGVVKRVVPDYPSNKEELEVISLKEGDRIVGAVELRTGEEDLIFITD 676 Query: 649 AGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPP--QSTLTIHVGKR 705 ++L + + + + G I + + + P + + G R Sbjct: 677 DAQLLRYQAAQVRPQGRPAGGMAGIKLTEGAK------VISFTAIDPAVDAVVFTVAGSR 730 Query: 706 ---------KIKLRPEELQKVTGERGRRGT 726 KL P + G R G Sbjct: 731 GTLDDSVQTTAKLTPFDQYPRKG-RATGGV 759 >UniRef50_Q1UZ45 DNA gyrase subunit A n=2 Tax=Candidatus Pelagibacter ubique RepID=Q1UZ45_PELUB Length = 849 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 239/779 (30%), Positives = 400/779 (51%), Gaps = 69/779 (8%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 + +++H+ ++YL+Y+M VI+ RALP + DGLKPV RRI++AM + G + S +F+KSA Sbjct: 12 IKLISMHDEMSSSYLSYAMSVIVSRALPDVRDGLKPVHRRILFAMYKGGYDWSKQFRKSA 71 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 R VGDV+GKYHPHGD + Y+A+V M Q FS PLV GQGN+G+ D AAMRYTE+R Sbjct: 72 RIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDP-AAAMRYTETR 130 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 L+K S+ L+ ++ + T ++ N+D T +EP +LPA+ PN+L+NG GIAVGMAT IPPHN Sbjct: 131 LAKVSQYLIDDIEKDTIEYKSNYDETEKEPSVLPAQYPNLLVNGAGGIAVGMATSIPPHN 190 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 L E+ +ALI+ + +L+ + GPD+PT II + I+ Y GRGS ++R Sbjct: 191 LGEIIDGTLALIENKDIKIKELMKHIPGPDFPTGGVII-GKEIIKAGYNVGRGSFKIRGE 249 Query: 245 WKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 E +VI+++P+QV+ + + E+IA +R KK+ + D+RDES+ E V Sbjct: 250 ISVEAQKNGRERLVITSVPYQVNKSVLNERIAQLVREKKIEGIKDIRDESNREGIR--VA 307 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 + N V+ + + L+ T +E S+ N I +DG+P + +L E L+ +L FR D V Sbjct: 308 IDLRNGVEPETIKRLLYKNTSIESSFGFNTLAI-VDGKPKICDLKEFLTNFLTFREDVVI 366 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSR---------- 406 ++ + L+K R HIL GL V+ N+D++I+IIR+ D+ K +L++ Sbjct: 367 KKTKFDLKKAEDRAHILIGLSVSVENLDKIIKIIRSSKTPDDAKKSLLNTKWKINKSLKL 426 Query: 407 ------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASE 454 + L++ Q AILEL+L+ L L +I E +L + I+ S+ Sbjct: 427 ISLVEDKKEKNLYSLSDPQVIAILELRLQKLTALGINEIEVEIKKLADLIKGYKKIINSK 486 Query: 455 RKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS-- 512 +++ N++ +EL+ + + RR+ + + + + E V I ++ G+++ Sbjct: 487 KELLNVISEELKTIKEKFAVPRRTKIIDAI--LNYDIEETIQKESVIITVTLQGYIKRGA 544 Query: 513 ------AKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--R 564 K G+ + DS + ++ V+F + G Y I +P Sbjct: 545 LSSVKQQKRGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLVYKIKAWKIPEGSTT 604 Query: 565 GQGEPLTGKLTLPPGATVDHMLMESDDQ------KLLMASDAGYGFVCTFNDLVARNRAG 618 +G+ L L L ++ ++ D++ +++ A+ G + D + N AG Sbjct: 605 SKGKSLFNILPLKNHQSISSIMPFPDEESDTKNLQIVFATAKGKVRKNSLEDFSSINSAG 664 Query: 619 KALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAE 678 K I L N ++ + +D D ++ T+ G+ + F L + KG+ +K I Sbjct: 665 KIAIKLDPNDKIVGVEICKDDQD-VMLSTKNGKCIRFESKKLR-IFKGRSSKGIK---GI 719 Query: 679 AARGEDGLAQLYVLPPQST----------LTIHVGKRKIKLRPEELQKVTGERGRRGTL 727 D + L + + + K +VT RG +G + Sbjct: 720 ELSPNDEIVSLSITNKEKIKKDTKSDGRFVLSITENGYGKKTLNNEYRVT-NRGGKGII 777 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 71/208 (34%), Gaps = 21/208 (10%) Query: 501 TIVLSQMGWVRSAKGHDIDAPGLNYK------AGDSFKAAVKGKSNQPVVFVDSTGRSYA 554 + + G VR D + K D K +Q V+ G+ Sbjct: 640 IVFATAKGKVRKNSLEDFSSINSAGKIAIKLDPNDKIVGVEICKDDQDVMLSTKNGKCIR 699 Query: 555 IDPITLPSARGQGEPLTGKLTLPPGATVDHMLME----------SDDQKLLMASDAGYGF 604 + L +G+ + L P + + + SD + +L ++ GYG Sbjct: 700 FESKKLRIFKGRSSKGIKGIELSPNDEIVSLSITNKEKIKKDTKSDGRFVLSITENGYGK 759 Query: 605 VCTFNDLVARNRAGKALITL---PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLP 661 N+ NR GK +I + P N + + + D ++ T GR++ V ++ Sbjct: 760 KTLNNEYRVTNRGGKGIIGIVNSPRNGSICSSFPVIEGDD-VMISTNKGRVIRVAVKEIR 818 Query: 662 QLSK-GKGNKIINIPSAEAARGEDGLAQ 688 + +G +II + E + Sbjct: 819 TAGRNTQGVRIIKLSGDEKVVSAIKIDD 846 >UniRef50_Q2S2H4 Type II DNA topoisomerase, A subunit n=2 Tax=Rhodothermaceae RepID=Q2S2H4_SALRD Length = 777 Score = 722 bits (1865), Expect = 0.0, Method: Composition-based stats. Identities = 260/766 (33%), Positives = 392/766 (51%), Gaps = 54/766 (7%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSE-LGLNASAKFKK 62 + E + LHE YLNY++ VI RALP I DGLKPVQRRI++AM + L L S + +K Sbjct: 3 VTETIPLHETARERYLNYALSVITSRALPDIRDGLKPVQRRILFAMFDSLNLYPSKRHRK 62 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SA VG+ +GKYHPHGD A Y+AMV MAQ FS R PLVDG GN+G+ D S AAMRYTE Sbjct: 63 SATVVGETMGKYHPHGDKAIYDAMVRMAQSFSLRAPLVDGHGNFGSLDG-DSAAAMRYTE 121 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 ++L + +L L T D+ NFDG+L+EP +LPAR+PN+L+NG +GIAVGMAT+IPP Sbjct: 122 AKLQPLAMEMLEGLRDETVDYRDNFDGSLEEPVVLPARVPNLLVNGASGIAVGMATNIPP 181 Query: 183 HNLREVAQAAIALIDQPKTTLDQLL-DIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 HNL EV AA+ +I++P+ L+ D +QGPD+PT I+ ++ E+ +IYE G G++ M Sbjct: 182 HNLGEVVDAALHMIEEPEVDTSTLVRDHIQGPDFPTGGRILNTQDELAEIYETGSGTIEM 241 Query: 242 RAVWKKEDGA-VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 R ++ + +I ++P+ V ++++E+IA + + +P + ++RDES + R+V+ Sbjct: 242 RGAYRTKGKTRAIIESVPYGVDKSKIVEEIADHIAEENVPQLSNVRDESTDD--VRIVLE 299 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR-----PAVKNLLEILSEWLVFRR 355 + D + M +LF T L+K + +NL + P +L IL +L FR Sbjct: 300 LKRGS-DTEAAMAYLFKHTKLQKRFHVNLTCLVPTESTDVKAPKQVDLRTILRYFLDFRL 358 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTET 412 D V RRL L ++ R+HILEG F +DE IEIIR N+ + LM RF L E Sbjct: 359 DVVTRRLQNELAELEARIHILEGFETIFDALDEAIEIIRASKNKADAAQRLMHRFQLDEE 418 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 Q +AILE +L L+++E IR E E + ++ +L E ++K ELQ Y Sbjct: 419 QTDAILETQLYKLSQMEIEAIRDELGEKRARAEGIRRLLDDEDARWGIVKDELQDIRDEY 478 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFK 532 D+RRS L +E D + E V +++++ GWV+ G D + + GD Sbjct: 479 TDERRSTLVGPGADMEYTEEDYIVDEDVHVIVTRDGWVKRQ-GTYSDLDAIRTRDGDEVG 537 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESD-- 590 A+ G + V F + G Y +PS G G+P+ + G V ++ D Sbjct: 538 WALAGSTRATVGFFTNYGTCYTTRITEIPSTTGYGDPVQKLFSFDDGEHVVGVVSFDDRA 597 Query: 591 -------------------------DQKLLMASDAGYGFVCTFND-LVARNRAGKALITL 624 ++ S G T + L G+ + L Sbjct: 598 LPDPVPAEPSEQGELFDPDDPDAPDQPYVVAISKGGQATRFTLDGYLEPSISTGRKYMRL 657 Query: 625 PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQ-LSKGKGNKIINIPSAEAARGE 683 + + V + + + + GR L+FPV + KG + I + + Sbjct: 658 EDGDE-VARVHLARGDENICLASHDGRALVFPVHQVSVYKGPAKGVRAIRLEDNDRV--- 713 Query: 684 DGLAQLYVLPPQSTLTIHV-GKRKIKLRPEELQKVTGERGRRGTLM 728 L + LT+ R+ +R + RG +GTL+ Sbjct: 714 --LDFALSTRARDGLTVETNNGREEIVRTTKFD--ATNRGAKGTLV 755 >UniRef50_C7XU56 DNA gyrase, A subunit n=16 Tax=Lactobacillales RepID=C7XU56_9LACO Length = 843 Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats. Identities = 245/754 (32%), Positives = 396/754 (52%), Gaps = 40/754 (5%) Query: 1 MSD-MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK 59 MSD E L L + + YS +I +RALP I DGLKPVQRRI++AM++ G Sbjct: 1 MSDNKIEELTLEQLMGERFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKG 60 Query: 60 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMR 119 F+KSA++VG+V+G +HPHGDS+ YEA+V ++Q + R PL++ GN G+ D AAMR Sbjct: 61 FRKSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDP-AAAMR 119 Query: 120 YTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 179 YTE+RLSK + L+L ++ + T + NFD T +EP +LPAR+PN+ +NG TGI+ G AT+ Sbjct: 120 YTEARLSKIAGLMLRDIDKDTVEMTLNFDDTEKEPTVLPARIPNLFVNGATGISAGYATE 179 Query: 180 IPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSV 239 IPPHNLRE+ QA I L+ P+ LD L+ V GPD+PT II IRK YE GRG V Sbjct: 180 IPPHNLRELIQALIYLLKHPEAFLDDLMTYVPGPDFPTGG-IIQGVDGIRKAYETGRGRV 238 Query: 240 RMRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENP 294 +RA E+ ++++ +P+ V+ A+++++I NKK+ + + RDE+D Sbjct: 239 ILRANTTIEELRGGRQQIIVTEIPYGVNKAQLVKRINDLRLNKKVEGISEARDETDRSG- 297 Query: 295 TRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVF 353 R+ I + N D + ++N+L TDL+ +Y N NM+ +D RP L L +L F Sbjct: 298 LRIAIELKRN-ADANGILNYLLKNTDLQINY--NFNMVAIDNQRPMRVGLKHYLKSYLAF 354 Query: 354 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLT 410 +++ + RR + L K RLHI+EGL+ A +D+VI+ IR N + L++ + T Sbjct: 355 QQEIITRRTQFNLHKAQTRLHIVEGLIKALSILDQVIKTIRASKNRKDATQNLVNEYQFT 414 Query: 411 ETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQ 470 + QAEAI+ L+L L + +R EQ L + IL + ++N +L KE +A + Sbjct: 415 QPQAEAIVALQLYRLTNTDVTDLRDEQQRLNDSIAEYNKILNDQNELNRVLVKEFKAIDK 474 Query: 471 AYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGL---NYKA 527 +G DR++ +++ + + +P E V +++S G+++ A L + Sbjct: 475 QFGSDRKTQIEKHIQKLTVDTKVTVPDEEVVVLVSHAGYIKRTSLRSFKASVLEENGLRE 534 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHM 585 D + + + + G L A+ + GE ++ + L + Sbjct: 535 DDYPLLIQRASTLNHLFMFTNQGHVIYRPVHELTDAKWKETGEHISQSIGLADDEEIIKA 594 Query: 586 LMESD---DQKLLMASDAGYGFVCTFNDLVA----RNRAGKALITLPENAHVMPPVVIED 638 L+ + ++ ++ G T DL ++RA + +A ++ E Sbjct: 595 LIFENLELPGTMIFSTSDGQVKQTTIQDLKPGSRYKSRASVVMKLKDASARMINAEYYEP 654 Query: 639 ASDML--LAITQAGRMLMFPVSDLP-QLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQ 695 + + AI++ G L F V+++P Q ++ G + IN+ + +D L L Sbjct: 655 QAQNVSLTAISKHGYGLRFDVAEVPTQGTRTAGVRAINL------KDDDELVNLVQTADD 708 Query: 696 STLTIHVGKRKIK-LRPEELQKVTGERGRRGTLM 728 L I + K +R EL+ G R RRG L+ Sbjct: 709 DRLAIMTQRGAFKEMRANELE--VGSRARRGVLV 740 >UniRef50_Q8CSN8 DNA topoisomerase 4 subunit A n=77 Tax=Bacteria RepID=PARC_STAES Length = 800 Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats. Identities = 239/747 (31%), Positives = 401/747 (53%), Gaps = 33/747 (4%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 MS++ + L+L + + + YS Y+I +RALP + DGLKPVQRRI++AM G F Sbjct: 1 MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNF 60 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 +KSA+TVGDV+G+YHPHGDS+ Y+AMV ++Q + R+ L++ GN G+ D+ AAMRY Sbjct: 61 RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPP-AAMRY 119 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE++LS+ SE LL ++ + T ++PN+D T EP +LPAR PN+L+NG+TGI+ G ATDI Sbjct: 120 TEAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDI 179 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL EV Q + IDQP T++QL+ ++GPD+PT II I+K YE G+G V Sbjct: 180 PPHNLAEVIQGTLKYIDQPDITINQLMKYIKGPDFPTG-GIIQGIEGIKKAYETGKGKVV 238 Query: 241 MRAVWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 +R+ +E ++++ +P++V+ + ++++I +KK+ + ++RDE+D Sbjct: 239 VRSRVDEEPLRSGRKQLIVTEIPYEVNKSSLVKKIDELRADKKVDGIVEVRDETDRTG-L 297 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 R+ I + + + + + N+L+ +DL+ SY N+ I +GRP + L EI+ +L + Sbjct: 298 RIAIELKKD-ANSESIKNYLYKNSDLQISYNFNMVAIS-EGRPKLMGLREIIESYLNHQI 355 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTET 412 + V R Y LE+ KR+HI+EGL+ A +DEVI +IRN + K L++ + TE Sbjct: 356 EVVTNRTRYDLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEYDFTEA 415 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QAEAI+ L+L L + ++ E ELE +L+ IL + + ++K EL + + Sbjct: 416 QAEAIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHEALLAVIKDELNEIKKKF 475 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN---YKAGD 529 DR S ++ + + M+PSE V + L+Q G+++ +A G+ K GD Sbjct: 476 KVDRLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGLKDGD 535 Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLM 587 + V+ + GR I L R + G+ ++ + + V ++ Sbjct: 536 RLLKHESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVNVYN 595 Query: 588 ESD---DQKLLMASDAGYGFVCTFNDLVARNRAGKALIT--LPENAHVMPPVVIEDASDM 642 E D + +MA+ G + + R K LI + + ++ V +E + Sbjct: 596 EKDFKNEAFYIMATKNGMIKKSSASQF-KTTRFNKPLINMKVKDKDELINVVRLES-DQL 653 Query: 643 LLAITQAGRMLMFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 + +T G L + ++L + G K IN+ + + V S + + Sbjct: 654 ITVLTHKGMSLTYSTNELSDTGLRAAGVKSINLKDEDYVVMTE-----DVNDSDSIIMVT 708 Query: 702 VGKRKIKLRPEELQKVTGERGRRGTLM 728 ++ LQ+ +R +RG + Sbjct: 709 QRGAMKRIDFNVLQE--AKRAQRGITL 733 >UniRef50_A9NF72 DNA topoisomerase IV, subunit A n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NF72_ACHLI Length = 857 Score = 718 bits (1853), Expect = 0.0, Method: Composition-based stats. Identities = 257/772 (33%), Positives = 401/772 (51%), Gaps = 38/772 (4%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + + E++ L + + + YS Y+I DRALP DGLKPVQRRI+YAM ++GL + + Sbjct: 12 IEEKIEKVLLEDIMSSRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMGQMGLAFNKSY 71 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR G+V+GKYHPHGDS+ YEAMV M+Q F R PLVD GN G+ D S AAMRY Sbjct: 72 KKSARIAGEVMGKYHPHGDSSIYEAMVRMSQDFKMRVPLVDMHGNNGSIDG-DSAAAMRY 130 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RLSK +E LL ++ + T ++VPNFD QEP +LPAR PN+L+NG GI+ G AT I Sbjct: 131 TEARLSKEAEFLLKDIDKRTVNFVPNFDDEEQEPTVLPARFPNLLVNGAMGISAGYATKI 190 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL EV A IALID P T D++L ++GPD+PT I+ +A I++ G G + Sbjct: 191 PPHNLNEVIDATIALIDNPNITNDEILKYIKGPDFPTGG-IVQGKAGIKEALTTGSGKII 249 Query: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 +RA E+ +VI+ +P++V+ A ++ QI N + + ++RDE+D E Sbjct: 250 IRAKMNVEEMSKSQDRIVITEIPYEVNKADLVRQIDNLRINNNIEDILEIRDETDQEGLR 309 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 + + + D + N+L ++DL+ +Y N+ I L RP + E+L +L ++ Sbjct: 310 IAIDLKK--GADAQFIQNYLLKSSDLQVNYNYNMVAI-LKHRPVLSGAFELLKVYLEHQK 366 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTET 412 + V R NY LE+ KR HI++GL+ + EVIE IR + K + RFG +E Sbjct: 367 EVVTNRSNYELERATKRNHIVDGLIQMTSVVSEVIEEIRKSKNKADSKENIQKRFGFSEL 426 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QAEAI+ L+L L+ + + E+ L KE +L+ IL++ER + +K ELQ Sbjct: 427 QAEAIVMLQLYRLSTTDIQALLDEKDTLYKEITRLEQILSNERILLKTIKSELQEVQTLL 486 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG-LNYKAGDSF 531 RR+ L+ E + E D++ E + +++ G+V+ A + A + K D+ Sbjct: 487 PSPRRTELEAEIETIKIDEKDLISDEQTYVAITKDGYVKRASLRSVVASKEVGLKENDAM 546 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLMES 589 + + ++ + G+ + + + + G + + G T+ +L S Sbjct: 547 LYEEELNTLDTLLLFTNLGQYIYLPVYKIEEQKWRDLGVYINNIVPTSKGETIIRVLKVS 606 Query: 590 D---DQKLLMASDAGYGFVCTFNDL-VARNRAGKALITLPENAHVMPPVVIEDASDMLLA 645 D DQK+L+ + G D V+R + L ++ ++ + D ++A Sbjct: 607 DFSIDQKILLTTKQGQMKQVNLADFEVSRYNRPLRAMKLSKDDELVSVD--YNQLDNIVA 664 Query: 646 ITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKR 705 I++ G +L F +LP G + S A G++ Y + Sbjct: 665 ISKHGYVLRFDTEELPVYGLTAG----GVKSMALAEGDEVAVAFYAKESDDFYFLTSRGH 720 Query: 706 KIKLRPEELQKVTGERGRRGTLMRGLQRIDRVE-----IDSPRRASSGDSEE 752 IK EL K R RRG ++ +DR++ I S R S +E Sbjct: 721 IIKDTVLELPKY--ARNRRGIIL-----VDRIKTSPHFIISASRVSKTQIKE 765 >UniRef50_Q2GCH4 DNA gyrase, A subunit n=2 Tax=Neorickettsia RepID=Q2GCH4_NEOSM Length = 869 Score = 717 bits (1852), Expect = 0.0, Method: Composition-based stats. Identities = 233/733 (31%), Positives = 387/733 (52%), Gaps = 52/733 (7%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 + L + +++YL+Y+M VI++RA+P + DGLKPV RRI+Y+M+EL + ++KSAR + Sbjct: 7 VNLEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRKSARVI 66 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 G+V+GKYHPHGDSA Y+A+V MAQ FS PL+DGQGN+G+ D AAMRYTE RL Sbjct: 67 GEVIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDGDP-AAAMRYTEVRLEY 125 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 S+ LL +L + + D+ N+D + EP +LPA+ PNIL+NGT G+AVGMAT++P HNL E Sbjct: 126 ISKFLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTHNLSE 185 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 V +A ++ T D+LL +++GPD+PT II I+ +E+GRGS+ +R+ Sbjct: 186 VIEACKLYLENNNVTTDELLKVIKGPDFPTGGLII-GEEGIKASFESGRGSIIIRSKTHF 244 Query: 248 ED----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 E+ A+++ LP+QV+ A+++E IA ++ K+L + DLRDES+ E R+VI + Sbjct: 245 EETEAGKAIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEG-IRVVIELKR 303 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLN 363 + V+N LF T L+ SY N+ ++ + RP + +L +IL+ ++ R++ + RR Sbjct: 304 G-ASFEVVLNQLFQMTQLQTSYSTNMVLLD-NMRPTLMSLRDILAAFIAHRKEVISRRTE 361 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMS------------------ 405 +RL K ++ ++L L VA LNIDEV+ I+++ + + A+ + Sbjct: 362 FRLAKAREKANVLVALYVAILNIDEVVHILKSSGDNEAAIKALSAKHWAIDEELELLVET 421 Query: 406 ---------RFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERK 456 + L+ Q++AILE+K++ + E+ ++ E + IL SE Sbjct: 422 ISNIKLLNREYKLSTAQSKAILEMKMQRITNTEKGQLVAEIHAEMDIVKECASILGSEAV 481 Query: 457 MNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS---- 512 + N++ +EL Y R+S + + A +E D++ E V + + G+++ Sbjct: 482 LTNVIVRELNEIKAKYPQARKSIILKNVNA-VYAEEDLIEREQVVVTATYSGYIKRVHIS 540 Query: 513 ----AKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQ 566 + N K+ D ++ ++F S G+ Y + LP + + Sbjct: 541 NYRVQRRGGKGRIAQNIKSEDQLAQIFVLSTHDEILFFSSRGKVYKLKAYKLPIGEPQSR 600 Query: 567 GEPLTGKLTLPPGATVDHMLM--ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL 624 G L L ++ +L SD + L+ + G + +D GK I L Sbjct: 601 GRALVNIFDLADDESITSILPLKSSDAENLIFLTAQGKVKRNSMSDFAYVPANGKVAIRL 660 Query: 625 PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQL--SKGKGNKIINIPSAEAARG 682 +N ++ V D + T+ G+ + F V DL L +G K I + + A Sbjct: 661 NDNDALIS-VKTAQNEDCVFISTRDGKCIRFLVGDLRVLKSRSSEGVKAITLGKDDNAIS 719 Query: 683 EDGLAQLYVLPPQ 695 L + + P Sbjct: 720 LSILNKQVLSPED 732 Score = 64.5 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 34/238 (14%), Positives = 81/238 (34%), Gaps = 38/238 (15%) Query: 497 SEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTG 550 I L+ G V+ D + D+ + ++ V G Sbjct: 626 DAENLIFLTAQGKVKRNSMSDFAYVPANGKVAIRLNDNDALISVKTAQNEDCVFISTRDG 685 Query: 551 RSYAIDPITL---PSARGQGEP--------------LTGKLTLPPGATVDHMLMES---- 589 + L S +G + K L P ++M + Sbjct: 686 KCIRFLVGDLRVLKSRSSEGVKAITLGKDDNAISLSILNKQVLSPEDKAEYMKTKFFERI 745 Query: 590 ------DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---PENAHVMPPVVIEDAS 640 ++Q +L ++ GYG + + + NR G +I + N V+ + ++ Sbjct: 746 QNPENHEEQFVLTVTENGYGKITSSYEYRITNRGGVGIINISTSERNGKVVSSFKVTLSN 805 Query: 641 DMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQST 697 ++ +T G+++ +++P L + +G ++ +I + E + ++ ++T Sbjct: 806 -HIMLVTNRGQVIRIEANNIPVLGRNTQGVRLFSIRAEERVASVTEVEEVEDDDSETT 862 >UniRef50_B6BPL3 DNA gyrase, A subunit n=3 Tax=Bacteria RepID=B6BPL3_9RICK Length = 859 Score = 716 bits (1848), Expect = 0.0, Method: Composition-based stats. Identities = 233/739 (31%), Positives = 388/739 (52%), Gaps = 58/739 (7%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + + +++H+ ++YL+Y+M VI+ RALP I DGLKPV RRI+YAM + G + S +F+K Sbjct: 10 NNIKLISMHDEMSSSYLSYAMSVIVSRALPDIRDGLKPVHRRILYAMYKGGYDWSKQFRK 69 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SAR VGDV+GKYHPHGD + Y+A+V M Q FS PLV GQGN+G+ D AAMRYTE Sbjct: 70 SARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDGDP-AAAMRYTE 128 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +RLSK S+ L+ ++ + T + N+D T +EP +LPA+ PN+L+NG GIAVGMAT IPP Sbjct: 129 TRLSKVSQYLIDDIEKNTISFKSNYDETEKEPTVLPAQYPNLLVNGAGGIAVGMATSIPP 188 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HNL E+ +ALID + +L+ V GPD+PT II + I+ Y NGRGS ++R Sbjct: 189 HNLGEIINGTLALIDNKDIKIRELMKYVPGPDFPTGGVII-GKDIIKHGYNNGRGSFKIR 247 Query: 243 AVWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 E +VI+++P+QV+ + + E+IA +R KK+ + D+RDES+ E Sbjct: 248 GEVSVESLKNGRERLVITSIPYQVNKSVLNERIAQLVREKKIEGIKDIRDESNREGIR-- 305 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 V + N V+ + + L+ T +E S+ N I + G+P L + LS +L FR D Sbjct: 306 VAIDLRNGVEPETIKRQLYKNTQIESSFGFNTLAI-VQGKPKTCTLKDFLSNFLSFREDI 364 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMS------------ 405 V ++ + L+K +R HIL GL V+ N+D++I+IIR+ P+ A + Sbjct: 365 VIKKTKFDLQKAEERAHILIGLSVSVENLDKIIKIIRSSKTPEDAKQAILKTKWKINKSQ 424 Query: 406 -------------RFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILA 452 + L+E Q AILEL+L+ L L +I E +L + + + I++ Sbjct: 425 KLISLVEGKKGKGLYSLSEPQVIAILELRLQKLTALGINEIEVEIKKLAELIARYKKIIS 484 Query: 453 SERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS 512 S++++ ++ +EL+ + + RR+ + + + + + V I ++ G+++ Sbjct: 485 SKKELLKVISEELKNIKEKFAVPRRTKIIDA--VLNYDIEETIQKQSVIITVTLQGYIKR 542 Query: 513 --------AKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS-- 562 K G+ + DS + ++ V+F + G Y + +P Sbjct: 543 GSLDGVKQQKRGGKGKSGITTRDQDSVVQTLSVNTHTSVLFFSTEGLVYKVKAWKIPEGS 602 Query: 563 ARGQGEPLTGKLTLPPGATVDHMLMESDDQ------KLLMASDAGYGFVCTFNDLVARNR 616 + +G+ L L L ++ ++ +++ +++ A+ G + D + N Sbjct: 603 SSSKGKSLFNILPLKSHQSISSIMPMPENETDLKNYQIIFATAQGKVRKNSLEDFSSINA 662 Query: 617 AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPS 676 +GK + L N ++ + +D D ++ T+ G+ + F L KG+ +K I Sbjct: 663 SGKIAMKLDNNDKIVGVKICQDDQD-IILSTKFGKCIRFEAKKLRV-FKGRSSKGIK--- 717 Query: 677 AEAARGEDGLAQLYVLPPQ 695 D + L V+ Sbjct: 718 GIELAPNDQIVSLSVIDND 736 Score = 70.7 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 74/221 (33%), Gaps = 31/221 (14%) Query: 501 TIVLSQMGWVRSAKGHDIDAPGLNYK------AGDSFKAAVKGKSNQPVVFVDSTGRSYA 554 I + G VR D + + K D + +Q ++ G+ Sbjct: 640 IIFATAQGKVRKNSLEDFSSINASGKIAMKLDNNDKIVGVKICQDDQDIILSTKFGKCIR 699 Query: 555 IDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDD--------------------QKL 594 + L +G+ + L P + + + +D + + Sbjct: 700 FEAKKLRVFKGRSSKGIKGIELAPNDQIVSLSVIDNDKTKKNGKKSKDDKSEIKAKEKFV 759 Query: 595 LMASDAGYGFVCTFNDLVARNRAGKALITL---PENAHVMPPVVIEDASDMLLAITQAGR 651 L S+ GYG + D NR GK +I + P N ++ + + D +L T GR Sbjct: 760 LSISENGYGKKTSHIDYRVTNRGGKGIIGIVNSPRNGNITSSFPVFEG-DEILISTNKGR 818 Query: 652 MLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYV 691 ++ V ++ + +G +II + E + + Sbjct: 819 VIRVAVKEIRTAGRNTQGVRIIKLSGEEKVVSAIKIDDNLI 859 Score = 46.8 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 28/239 (11%), Positives = 71/239 (29%), Gaps = 26/239 (10%) Query: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK 421 NY++ + + + L F +I+ +I D + + + + IL K Sbjct: 636 KNYQIIFATAQGKVRKNSLEDFSSINASGKIAMKLDNNDK--IVGVKICQDDQDIILSTK 693 Query: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQ 481 + E K+R + K ++ + +++ + D +S ++ Sbjct: 694 FGKCIRFEAKKLRVFKGRSSKGIKGIELAPNDQIVSLSVIDNDKTKKNGKKSKDDKSEIK 753 Query: 482 EREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKA---------GDSFK 532 E + +S+ G+ + D K + Sbjct: 754 --------------AKEKFVLSISENGYGKKTSHIDYRVTNRGGKGIIGIVNSPRNGNIT 799 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDD 591 ++ ++ + GR + + +A G+ + L V + D+ Sbjct: 800 SSFPVFEGDEILISTNKGRVIRVAVKEIRTA-GRNTQGVRIIKLSGEEKVVSAIKIDDN 857 >UniRef50_B5Y886 DNA gyrase, A subunit n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y886_COPPD Length = 758 Score = 715 bits (1845), Expect = 0.0, Method: Composition-based stats. Identities = 259/701 (36%), Positives = 406/701 (57%), Gaps = 36/701 (5%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 M+ + ER + E + +Y++Y+M VI+ RALP + DGLKPVQRRI+Y+MSE G + + Sbjct: 1 MAGIHER-EITEELKQSYIDYAMSVIVGRALPDVRDGLKPVQRRIIYSMSETGSTYNNPY 59 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VGDVLGKYHPHGD++ Y+A+V MAQ F RYPLVDG GN+G+ D AAMRY Sbjct: 60 KKSARIVGDVLGKYHPHGDASVYDALVRMAQDFVMRYPLVDGHGNFGSMDGDPP-AAMRY 118 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE RL++ SE L+ +L + T +WVPNFDG+L+EP++LPA P +L+NG++GIAVG++T I Sbjct: 119 TEVRLTRLSEYLVQDLDKDTVNWVPNFDGSLKEPEVLPAVFPQLLVNGSSGIAVGVSTYI 178 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL E+ A + + P+ T QL+ V+GPD+PT +II + ++ K+YE G+G +R Sbjct: 179 PPHNLGEIIDATLHFLHNPEATSRQLMRFVKGPDFPTGGQIINPQ-DLVKVYEEGKGVIR 237 Query: 241 MRAVWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 +R K E+G +VI +P+ V+ A ++ QIA +R++KL VD++RDES+ + Sbjct: 238 VRGRAKLEEGHGQKRRLVIYEIPYMVNKAELVSQIAQLIRDRKLSGVDEVRDESNRQG-V 296 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 R+V+ + ++N L+ T LE S+ IN+ + DG P L + ++ ++ FR+ Sbjct: 297 RVVLELKK-GASFHHILNQLYEQTALENSFAINMVALK-DGAPVQLTLRDYIASFVDFRK 354 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTET 412 +T+ RR Y L+K KR ++EG+L A NID VIEIIRN D+ K LMS+ GLTE Sbjct: 355 ETILRRTRYLLDKASKRREVVEGILKALDNIDLVIEIIRNAETTDQAKRRLMSQIGLTEV 414 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QAEA+LE+KLR L +E+ K+ E L K + IL SE K+ ++ +EL+ + + Sbjct: 415 QAEAVLEIKLRSLVHMEKEKVEQELESLLKAIAEYTEILNSETKLLEVIAEELKHVKKLF 474 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFK 532 D RR+ + ++ + E I L + G +R +K + Sbjct: 475 ADQRRTLIGFSDQQTETVQA---AEETFFIELLEYGIIRRSKTQT------------NLV 519 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQ 592 ++ + + PV+F+ + G+ + I +P ++ +G L + V +L+ + +Q Sbjct: 520 DFIEVQGSDPVMFLTNFGKIFCISAYEIPESQ-RGVALNALFPMGNDEKV--LLLGTQNQ 576 Query: 593 KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRM 652 +L+ S+ G G + +R G + L V V++ S L+ I+ G+ Sbjct: 577 ELIAISEKGKGKRFRLDVEKIPSRGGYYFL-LDPGDMV--SVIVPVTSKELVVISAQGKA 633 Query: 653 LMFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVL 692 L V +P+ + G K++ + G L Q Y++ Sbjct: 634 LRLDVESIPERGLRTGGVKVMRTYEGDRVVGATCLKQKYIV 674 >UniRef50_B5Y5U7 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B5Y5U7_PHATR Length = 818 Score = 714 bits (1844), Expect = 0.0, Method: Composition-based stats. Identities = 238/776 (30%), Positives = 395/776 (50%), Gaps = 54/776 (6%) Query: 19 LNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHG 78 + Y++ +IM RA+P DGLKPV RRI+YAM +L L + +K AR VG+VLGK+HPHG Sbjct: 1 MQYALSIIMGRAIPDARDGLKPVHRRILYAMDQLSLYPNTGHRKCARVVGEVLGKFHPHG 60 Query: 79 DSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSE-LLLSELG 137 D A Y+A+V +AQ FS YPL+DG GN+G+ D AAMRYTE RL+K S+ LL +L Sbjct: 61 DMAVYDALVRLAQHFSTAYPLIDGHGNFGSIDADP-AAAMRYTECRLTKLSQAALLEDLQ 119 Query: 138 QGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALID 197 T D++PNFDG EP +LPA+LP +LLNG++GIAVGMAT+IPPHNL E+ A AL+ Sbjct: 120 DDTVDFLPNFDGNEIEPAVLPAKLPILLLNGSSGIAVGMATNIPPHNLNEIMTACTALVK 179 Query: 198 ----QPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED---- 249 T +LL +V GPD+PT A I+ S K+Y G G + MRAV K E Sbjct: 180 ARQGGAAVTDKKLLQMVPGPDFPTGASIL-STGGTEKLYTTGNGGIVMRAVTKIEKITTG 238 Query: 250 -------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 A++++ LP+QV+ A +LE+IA + KKL + DLRDESD + R+VI + Sbjct: 239 RKSSITRTAIIVTELPYQVNKAALLEKIAGLVNEKKLDGIADLRDESDRDG-IRVVIELK 297 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR-------PAVKNLLEILSEWLVFRR 355 + V V+N+L+ T L+ ++ N + R P L + + +L FR Sbjct: 298 RDAV-AAVVLNNLYKKTPLQTTFSGNFLALMTANRDSSSSLVPQRFTLRQAMDCFLDFRF 356 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTET 412 +T+RR+ ++L KV R HI+ GLL+A +D VI+I+R + + AL G + Sbjct: 357 ETIRRKSQFQLTKVNARSHIVAGLLMALDKVDMVIQIVRASADQQAAREALYIELGTSSE 416 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 Q +AIL+L+L L +L + K+ E+++LE+ R+ L +L + + +++++E + + Sbjct: 417 QTDAILKLQLGQLTRLNKGKLESEKADLEESRESLTHLLEVDDAVYDVMREEFIDMMKRF 476 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKA----- 527 G +R+S + E+ + D++ + IV+++ G+++ ++ G + Sbjct: 477 GGERKSSII-VEDDGDFCDMDLIENSRSVIVVTRGGYIKRMPLKTFESQGRGTRGKRGTS 535 Query: 528 ------GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPG 579 + ++ V G +Y + +P +G+P+ L + Sbjct: 536 DGGESADSEVAHCFTCNDHDTLLMVTQNGIAYGLRAYQVPIAGRTAKGQPIPSVLPVRGD 595 Query: 580 ATVDHMLM---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVI 636 + +L SD++ +++ ++ G+ + + G + TL + + + Sbjct: 596 EVITAILPVSEFSDEEYVVLTTEQGWIKRTPLDAFEKLSSRGLTIATLEDGDRLKWCHRV 655 Query: 637 EDASDMLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVLPPQ 695 + D+L+ T G F + L + +G + + + + + L+ + Sbjct: 656 RNEDDILIG-TVGGMATRFGAAKLRPTGRTSRGVRAMKLREGDTIADMNVLSGK---NKE 711 Query: 696 STLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 LT+ ++ E + RG G + +R + S R D E Sbjct: 712 YILTVTAQGYGKRIATSEFR--AQARGGVGVIAIKFKRGQEEDKVSCLRIVKDDEE 765 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 76/213 (35%), Gaps = 24/213 (11%) Query: 497 SEPVTIVLSQMGWVRSAKGHDIDAPGLN------YKAGDSFKAAVKGKSNQPVVFVDSTG 550 E ++ ++ GW++ + + GD K + ++ ++ G Sbjct: 609 DEEYVVLTTEQGWIKRTPLDAFEKLSSRGLTIATLEDGDRLKWCHRVRNEDDILIGTVGG 668 Query: 551 RSYAIDPITL-PSAR-GQGEPLTGKLTLPPGATVD--HMLMESDDQKLLMASDAGYGFVC 606 + L P+ R +G + L G T+ ++L + + +L + GYG Sbjct: 669 MATRFGAAKLRPTGRTSRG---VRAMKLREGDTIADMNVLSGKNKEYILTVTAQGYGKRI 725 Query: 607 TFNDLVARNRAGK--ALITLPEN--AHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQ 662 ++ A+ R G I + + I + +L IT G M+ SD+P Sbjct: 726 ATSEFRAQARGGVGVIAIKFKRGQEEDKVSCLRIVKDDEEILVITARGIMVRQKASDIPS 785 Query: 663 LSK-GKGNKIINIPSAEAARGEDGLAQLYVLPP 694 + G + + D ++ + ++P Sbjct: 786 QGRSATGVMVQRVDDG------DHISSVSIVPQ 812 >UniRef50_B9ZQ27 DNA gyrase, A subunit n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQ27_9GAMM Length = 823 Score = 713 bits (1840), Expect = 0.0, Method: Composition-based stats. Identities = 240/749 (32%), Positives = 387/749 (51%), Gaps = 34/749 (4%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 S+ L + +++ +Y+M VI DRALP DGLKPV RRI+Y+M +LG+ K Sbjct: 12 SNAPLELEIGNVMRSSFADYAMSVITDRALPDARDGLKPVHRRILYSMHQLGITHMVAHK 71 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VGDVLGKYHPHGDSACY++ V MAQ ++ R+PL+DGQGN+G+ D + AAMRYT Sbjct: 72 KSARVVGDVLGKYHPHGDSACYDSAVRMAQHWAMRHPLIDGQGNFGSIDG-DNAAAMRYT 130 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E RLSK L +++ + T D+ NFDGT +EP++LP PN+L+NG+ GIAVGMAT +P Sbjct: 131 EMRLSKLGTRLFADIQKNTVDFRDNFDGTEREPEVLPLTYPNLLVNGSEGIAVGMATSVP 190 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNLRE A A +A +D P+ T ++ + GPD+PT I+ + + GRG+V++ Sbjct: 191 PHNLRETADAFLAWLDNPEITTREIAQHMPGPDFPTGG-ILHDLDGYIQALDTGRGAVKL 249 Query: 242 RAVWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 R+ W ED +VI +P+ V+ A+++EQIA +R KK+ V DLRDES+ + R Sbjct: 250 RSQWTVEDRPRGGSRLVIDQIPYAVNKAKLVEQIAELVREKKIEGVADLRDESNKKG-IR 308 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 +V+ + + + + L T LE S R N+ M + P + ++ + R + Sbjct: 309 IVLEIKR-EFEAEAIAFQLVTMTQLETSVRYNI-MALVGQTPMQLGVRDLFEHFRAHRIE 366 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQ 413 ++RR + L++ L RLHILEGLL+A +DE I IR + DE + L+ G+ TQ Sbjct: 367 VIQRRTQFDLDRALDRLHILEGLLMALDRLDETIATIRASADADEARGGLIDLLGIDVTQ 426 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 A+AIL++KL+ L L+ IR E L E L+ ILA + +++ EL + Sbjct: 427 AQAILDMKLQKLTGLQIQDIRDEHDRLTAEVADLRDILARSERQVEIMRTELLDLCDQHA 486 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK------- 526 ++R + + +S D++P E V ++ +Q G+++ D++ K Sbjct: 487 NERCTEI--DTSLSKVSAADLIPEEDVMLIGTQQGYLKRIAAKDMNRQNRGTKGRSIMSV 544 Query: 527 -AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVD 583 D G S+ ++ + +G+ +AI +P +G G V Sbjct: 545 GEDDLVTTFHAGHSHDTLIALTDSGQVHAIKAYDIPDTGLGNKGRHYRNVFEGVEGNVVA 604 Query: 584 HMLM---ESDDQKLLMASDAGYGFVCTFNDLVARN-RAGKALITLPENAHVMPPVVIEDA 639 + + ES L++ + G + R G I+L E ++ V +D Sbjct: 605 MLTVDGLESVTHSLVIFTAQGLVKRTPLSAYSNATRRGGIQGISLVEGDSIVCARVSKDE 664 Query: 640 -SDMLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVLPPQST 697 ++ ++ + + F + + + + +G + +N+ D + + ++ Sbjct: 665 PNESVIVAADNAKAIRFGMEEARAIGRTSRGVRAMNLSEDARVVAGDIIHADDL--EKAH 722 Query: 698 LTIHVGKRKIKLRPEELQKVTGERGRRGT 726 L + K K P + RG +G Sbjct: 723 LMVVSEKGLGKATPASEFR-LQSRGGKGV 750 >UniRef50_Q114B8 DNA topoisomerase IV subunit A n=4 Tax=Cyanobacteria RepID=Q114B8_TRIEI Length = 873 Score = 712 bits (1839), Expect = 0.0, Method: Composition-based stats. Identities = 266/822 (32%), Positives = 403/822 (49%), Gaps = 98/822 (11%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 +S +LH + +YL Y+M VI+ RALP + DG KPV RRI+YAM ELGL F Sbjct: 8 LSGKVITTSLHTEMQQSYLEYAMSVIVGRALPDVRDGQKPVHRRIIYAMHELGLTPDRPF 67 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 +K AR VGDVLGKYHPHGD A Y+AMV M Q FS RYPL+DG GN+G+ D AAMRY Sbjct: 68 RKCARVVGDVLGKYHPHGDQAVYDAMVRMIQNFSSRYPLLDGHGNFGSID-NDPAAAMRY 126 Query: 121 TESRLSKYSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 179 TESRL+ LL+++ + D+ NFDG+ QEPK+LPA+LP +LLNG++GIAVGMAT+ Sbjct: 127 TESRLASIGNEGLLTQISEAIVDFTNNFDGSQQEPKVLPAQLPFLLLNGSSGIAVGMATN 186 Query: 180 IPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSV 239 +PPHNL EV IALID P + +L +++ GPD+PT EI+++ I Y GRGS+ Sbjct: 187 VPPHNLGEVVDGLIALIDNPNISDQKLFELIPGPDFPTGGEIVST-DGIIDTYTKGRGSI 245 Query: 240 RMRAVWKKE----------DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDES 289 MR V E A+V++ LP QV+ A +E+ A + K+ + DLRDES Sbjct: 246 PMRGVATIEQVPTGRGRRTKTAIVVTELPFQVNKAGWIEKTADLVNAGKIEGIADLRDES 305 Query: 290 DHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSE 349 D R+VI + D V++HL+ TDL + + + ++G+P +L +L E Sbjct: 306 DRSG-IRVVIELKR-EADPSVVLHHLYRNTDLLSKFGAIM-LALVNGQPQQLSLRTLLQE 362 Query: 350 WLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSR 406 +L FR +T+ R + L+ R HI+ GLL A +D VI+I+RN + K + Sbjct: 363 FLNFREETLTRHYTHELQIAQARSHIVAGLLTALKELDRVIDILRNAPDGNTAKVSFQES 422 Query: 407 FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ 466 GL+E QA+AIL + +R L LE+ K+ E +L + +L+ +L ++ LKKEL+ Sbjct: 423 LGLSENQADAILAMPMRRLTGLEKQKLEEEHEQLMGKIQELENLLGDRHQLLKALKKELR 482 Query: 467 ADAQAYGDDRRSPLQEREEAKAMSEHDML------------------------------- 495 + Y D RR+ + ++ + K + + Sbjct: 483 TLKRKYNDPRRTRIIDQIKLKNADDFASISQQKKYLEAGNKEIDIKTKGRVIKSKNITVK 542 Query: 496 -----------PSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK-------AGDSFKAAVKG 537 P+E V I S G+VR + ++ K + D ++ Sbjct: 543 SPILTLEAAPPPTEKVVIEFSHRGYVRRIPAKGFEKYKIDKKSHITMENSEDFTTNIIEA 602 Query: 538 KSNQPVVFVDSTGRSYAIDPITLPSAR--------GQGEPLTGKLTLPPGATVDHMLME- 588 +++ +V + TG++Y + +PSA +G PL L + E Sbjct: 603 TTDKTLVLLTRTGKAYPLKVNNIPSASNRSTIRNENKGVPLVTLLPPSATKEITDARKEI 662 Query: 589 ----------SDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIED 638 +++ L+M + G +DL G +I L E+ + + + Sbjct: 663 IIGQFILNEAKENKDLIMLTQNGKIKRLCLSDLSDMRNRGVTVIKLKEDDELRYVSLGKT 722 Query: 639 ASDMLLAITQAGRMLMFPVSD--LPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQ 695 ++LA T GR+L + D LP + + G++ + R ++ L L Sbjct: 723 GEQVVLA-TSGGRLLRLQIDDEKLPLMGRAAQGSQATRL------RKQEELVGCVTLDIG 775 Query: 696 STLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRV 737 S L + K P +V RG G + R D + Sbjct: 776 SNLLLVSQHSYGKQIPVTALRVA-NRGGIGQNVFQFTRQDDI 816 Score = 58.0 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 71/226 (31%), Gaps = 33/226 (14%) Query: 474 DDRRSPLQEREEAKAMSE-HDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYK 526 D R+ + + E D++ +L+Q G ++ D+ + K Sbjct: 657 DARKEIIIGQFILNEAKENKDLI-------MLTQNGKIKRLCLSDLSDMRNRGVTVIKLK 709 Query: 527 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPI--TLP--SARGQGEPLTGKLTLPPGATV 582 D + GK+ + VV S GR + LP QG + L + Sbjct: 710 EDDELRYVSLGKTGEQVVLATSGGRLLRLQIDDEKLPLMGRAAQG---SQATRLRKQEEL 766 Query: 583 DHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGK--ALITLPENAHVMPPVVIEDAS 640 + LL+ S YG L NR G + ++ +V ++ Sbjct: 767 VGCVTLDIGSNLLLVSQHSYGKQIPVTALRVANRGGIGQNVFQFTRQDDILAGIVASSSN 826 Query: 641 DMLLAITQAGRMLMFPVSDL----------PQLSKGKGNKIINIPS 676 ++ +T GR+ + L G KII + Sbjct: 827 VLVQVLTTDGRVFGMIADRVKVDQQDDHGHRLLKLGAKEKIIKVVG 872 >UniRef50_C6RQR3 DNA gyrase, A subunit n=3 Tax=Moraxellaceae RepID=C6RQR3_ACIRA Length = 985 Score = 712 bits (1839), Expect = 0.0, Method: Composition-based stats. Identities = 249/826 (30%), Positives = 403/826 (48%), Gaps = 117/826 (14%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 +A+ + +++YL+Y+M VI+ RALP + DGLKPV RR++YAM ELG + + +KKSA Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 R VGDV+GKYHPHGDSA YE +V MAQ FS RY LVDGQGN+G+ D S AAMRYTE R Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDG-DSAAAMRYTEVR 124 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 + K + +L++L + T DW N+DG+ + P+++P R+PN+L+NG GIAVGMAT++ PHN Sbjct: 125 MRKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGAAGIAVGMATNMAPHN 184 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 + EV A +A D +++ L++ + GPD+PT II ++ I Y G+G + +R Sbjct: 185 MTEVVNACLAYADNTNISVEGLMEYISGPDFPTGG-IIYGKSGIVDAYRTGKGRLHIRGK 243 Query: 245 WKKEDG------AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + E+ +V + +P+QV+ ARV+E+IA ++ KKL + +LRDESD + + Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAI 303 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + R + + V+N+LF T LE S+ IN+ + +G+P + NL +I++ ++ R++ V Sbjct: 304 DLKRGE--NAEVVVNNLFLNTQLENSFSINMVCLD-NGQPKLMNLKDIIAAFIRHRQEVV 360 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKP----------------A 402 RR Y L K +R HILEGL VA NID++I+ I+ P A Sbjct: 361 TRRTMYELRKARERGHILEGLTVALANIDDIIDAIKTSANPAEARERLLAADWAAGGVGA 420 Query: 403 LMSR--------------------------FGLTETQAEAILELKLRHLAKLEEMKIRGE 436 ++ R + L+ TQ AILEL+L L LE+ K+ E Sbjct: 421 MLERAGSVSIRPDEIEGEDPSRPFGLDRDIYRLSPTQVAAILELRLNRLTGLEQDKLHAE 480 Query: 437 QSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLP 496 SE+ + +L IL + ++K+EL Q YGD RR+ + E S D++P Sbjct: 481 YSEILGQITELTAILNDFNLLMAVIKEELVLVLQQYGDARRTEIVESR--IDFSREDLIP 538 Query: 497 SEPVTIVLSQMGWVRSAKGHDI--------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDS 548 E V + +SQ G+ ++ D + K D + + ++ V+ + Sbjct: 539 EEQVVLTVSQSGYAKTQPLSDYAAQRRGGRGKSATSMKEDDFIQHLIVTSNHATVLCFTN 598 Query: 549 TGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVC 606 G+ Y + +P A +G P+ L L T+ +L D K Sbjct: 599 VGKVYRLRVFEVPQASRGSRGRPMINLLPLDANETITAILPVIDAPK-KFTERLAAFKNF 657 Query: 607 TFNDLVARNRAGKALITLPE--------NA--------------HVMPPVVIEDASDMLL 644 + V + LPE + + + + D D ++ Sbjct: 658 VKTNTVKLQDNPVISVHLPELETALAMLDDNADELSAELRTQLKQLCVELAVTDLDDEII 717 Query: 645 A-----------------ITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLA 687 T +G + + + + G + I + ED L Sbjct: 718 IEFAQQAESVRKNYYVFMATASGTVKRVELEQFSNV-RSNGLRAIELNE------EDTLI 770 Query: 688 QLYVLPPQSTLTIHVG-KRKIKLRPEELQKVTGERGRRGTLMRGLQ 732 + + + + + + I+ +++ + GR +RG++ Sbjct: 771 GVTITDGEQQIMLFSNEGKAIRFAETDVRAM----GRSAKGVRGMR 812 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 37/272 (13%), Positives = 90/272 (33%), Gaps = 43/272 (15%) Query: 447 LQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQ 506 L + + +++ L+ +L+ + L + + + + + + + Sbjct: 682 LAMLDDNADELSAELRTQLKQLCVELAV---TDLDDEIIIEFAQQAESVRKNYYVFMATA 738 Query: 507 MGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITL 560 G V+ + + D+ Q ++ + G++ + Sbjct: 739 SGTVKRVELEQFSNVRSNGLRAIELNEEDTLIGVTITDGEQQIMLFSNEGKAIRFAETDV 798 Query: 561 PSARGQGEPLTGK----LTLPPGA----------------------TVDHMLMESDDQKL 594 R G G + L A + +++ + ++ Sbjct: 799 ---RAMGRSAKGVRGMRVALAAQAEDTEDTDTDSEDEDSSDSNVVSRIVSLVVVPETGEV 855 Query: 595 LMASDAGYGFVCTFNDLVARNRAGKALITLPE---NAHVMPPVVIEDASDMLLAITQAGR 651 L AS GYG +D + R GK +I + N ++ V I D + L+ I+ G Sbjct: 856 LCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELVGAVAI-DETKELMLISDGGT 914 Query: 652 MLMFPVSDLPQLSK-GKGNKIINIPSAEAARG 682 ++ +++ Q + +G ++I + E G Sbjct: 915 LVRTRAAEVAQTGRNAQGVRLIRLGEGETLVG 946 >UniRef50_D0SBV6 Type IIA topoisomerase n=3 Tax=Gammaproteobacteria RepID=D0SBV6_ACIJO Length = 993 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 249/844 (29%), Positives = 401/844 (47%), Gaps = 112/844 (13%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 +A+ + +N+YL+Y+M VI+ RALP + DGLKPV RR++YAM ELG + + +KKSA Sbjct: 6 IRPIAIEDELKNSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 R VGDV+GKYHPHGDSA YE +V MAQ FS RY LVDGQGN+G+ D S AAMRYTE R Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDG-DSAAAMRYTEVR 124 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 + K + +L++L + T DW N+DG+ + P+++P R+PN+L+NGTTGIAVGMAT++ PHN Sbjct: 125 MRKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPHN 184 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 + EV A +A + P +++ L++ + GPD+PT II +A I Y G+G + +R Sbjct: 185 MTEVVNACLAYAENPNISIEGLMEYISGPDFPTGG-IIYGKAGIVDAYRTGKGRLHIRGK 243 Query: 245 WKKEDG------AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + E+ +V + +P+QV+ A+ +E+IA ++ KKL + +LRDESD + + Sbjct: 244 YHFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKDGMRIAI 303 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + R + + V+N+LF T LE S+ IN+ + +G+P + NL +I++ ++ R++ V Sbjct: 304 DLKRGE--NAEVVVNNLFQNTQLENSFSINMVCLD-NGQPKLMNLKDIVAAFIRHRQEVV 360 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKP----------------A 402 RR + L K +R HILEGL VA NID +IE I+ P A Sbjct: 361 TRRTMFELRKARERGHILEGLTVALANIDAIIETIKTSANPAEARERLQAGEWAAGNVIA 420 Query: 403 LMSR--------------------------FGLTETQAEAILELKLRHLAKLEEMKIRGE 436 L+ + + L+ Q AILEL+L L LE+ K++ E Sbjct: 421 LLEKAGSVSVRPDEIEGEDPSRPFGLDGQIYRLSPAQVGAILELRLHRLTGLEQDKLQAE 480 Query: 437 QSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLP 496 +E+ + +L IL + ++K+EL Q YGD RR+ + E S D++P Sbjct: 481 YTEILGQIAELTAILNDFNLLMAVIKEELALILQQYGDARRTAIVESR--IDFSREDLIP 538 Query: 497 SEPVTIVLSQMGWVRSAKGHDI--------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDS 548 E V + +S+ G+ ++ D + K D + + ++ V+ + Sbjct: 539 EEQVVLTVSKTGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVTSNHATVLCFTN 598 Query: 549 TGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVC 606 G+ Y + +P A +G P+ L L T+ +L D K Sbjct: 599 VGKVYRLRVFEVPQASRGSKGRPMVNLLPLDADETITAILPVIDAPK-KFKERLAEFKNF 657 Query: 607 TFNDLVARNRAGKA-----LIT------LPENAHV----------MPPVVIEDASDM--- 642 +++ + + + + + D Sbjct: 658 VRSNVATLRENSIIDAHYDALKASFDELAEDADELSDALRKQLKELGVELSTTDLDNETV 717 Query: 643 ---------------LLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLA 687 + T +G + + + + G + I + ED L Sbjct: 718 VEFADLAEKMRKNFFVFMATASGTVKRVELEQFSNV-RSNGLRAIELKE------EDTLI 770 Query: 688 QLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASS 747 + + + + + + K E +V G + MR + E D S Sbjct: 771 GVAITDGEQQIMLFSNEGKAIRFSETDARVMGRTAKGVRGMRVTLAAAQTEDDVETDTDS 830 Query: 748 GDSE 751 D E Sbjct: 831 DDEE 834 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 26/174 (14%) Query: 578 PGATVDHMLMESD----DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPP 633 TV ++ + + MA+ +G G I L E ++ Sbjct: 713 DNETVVEFADLAEKMRKNFFVFMATASGTVKRVELEQFSNVRSNGLRAIELKEEDTLIG- 771 Query: 634 VVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDG------- 685 V I D ++ + G+ + F +D + + KG + + + A A +D Sbjct: 772 VAITDGEQQIMLFSNEGKAIRFSETDARVMGRTAKGVRGMRVTLAAAQTEDDVETDTDSD 831 Query: 686 ------------LAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTL 727 + L V+P + K P + T +RG +G + Sbjct: 832 DEESSDLNVASRIVSLVVVPETGEVLCASANGYGKRTPVDDFP-TKKRGGKGVI 884 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 38/280 (13%), Positives = 92/280 (32%), Gaps = 41/280 (14%) Query: 429 EEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKA 488 E I L+ D+L ++++ L+K+L+ + L + Sbjct: 667 ENSIIDAHYDALKASFDELAE---DADELSDALRKQLKELGVELST---TDLDNETVVEF 720 Query: 489 MSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKSNQP 542 + + + + G V+ + + K D+ Q Sbjct: 721 ADLAEKMRKNFFVFMATASGTVKRVELEQFSNVRSNGLRAIELKEEDTLIGVAITDGEQQ 780 Query: 543 VVFVDSTGRS--YAIDPITLPSARGQGE--------------PLTGKLTLPPGA------ 580 ++ + G++ ++ + +G + Sbjct: 781 IMLFSNEGKAIRFSETDARVMGRTAKGVRGMRVTLAAAQTEDDVETDTDSDDEESSDLNV 840 Query: 581 --TVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE---NAHVMPPVV 635 + +++ + ++L AS GYG +D + R GK +I + N ++ V Sbjct: 841 ASRIVSLVVVPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELVGAVA 900 Query: 636 IEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINI 674 I D S L+ I+ G ++ S++ + + +G ++I + Sbjct: 901 I-DESKELMLISDGGTLVRTRASEVARTGRNAQGVRLIRL 939 >UniRef50_C5CCL2 DNA topoisomerase IV subunit A n=41 Tax=Actinobacteria (class) RepID=C5CCL2_MICLC Length = 868 Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats. Identities = 265/748 (35%), Positives = 395/748 (52%), Gaps = 56/748 (7%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 + + E E ++L Y+ VI RALP DGLKPVQRRI++ MS +GL KSAR V Sbjct: 29 VDVSEEMEASFLEYAYSVIYSRALPDARDGLKPVQRRILFMMSRMGLRPDRGHVKSARVV 88 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 G+V+GK HPHGD+A Y+AMV +AQPFS R P+VDG GN+G+ DD AA RYTE+R++ Sbjct: 89 GEVMGKLHPHGDAAIYDAMVRLAQPFSLRLPVVDGHGNFGSLDDGP--AAPRYTEARMAP 146 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 + L ++L +GT D+VPN+D Q+P +LPA PN+L+NGTTGIAVGMAT++ PHNLRE Sbjct: 147 AALALTADLDEGTVDFVPNYDNQFQQPAVLPAAYPNLLVNGTTGIAVGMATNMAPHNLRE 206 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 V A L+ P+ L+ ++ + GPD P+ I+ +R Y GRG+ RMRA Sbjct: 207 VVAGARHLLADPEAGLEAIMAHIPGPDLPSGGRIV-GLDGVRDAYATGRGTFRMRAAVAV 265 Query: 248 E-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 E +V++ LP+ V +V+E+I A + KKL + D+ D +D +N RL I + Sbjct: 266 EQVSARRTGLVVTELPYGVGPEKVIERIKAGVDAKKLSGIADVVDLTDRKNGLRLQIELK 325 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRL 362 S + V+ L+ T LE+++ IN N+ +DG+P LL +L ++ R D VRRR Sbjct: 326 SG-FNPQAVLAALYRHTPLEETFGIN-NVALVDGQPQTLGLLPLLRVYVDHRLDVVRRRT 383 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAEAILE 419 +RL K RLH++EGLL+A ++IDEVIEIIR+ D+ + LM F LT+ QA+ ILE Sbjct: 384 GHRLGKHRDRLHLVEGLLLALVDIDEVIEIIRSSDDTAAARTRLMGVFDLTQVQADHILE 443 Query: 420 LKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSP 479 L+LR L K ++++ E+ EL+ +L+ ILAS+ ++ ++ ELQA A +GDDRR+ Sbjct: 444 LRLRQLTKFSRIELQAERDELQAAIAELEAILASDARLREVVSAELQAVADEHGDDRRTV 503 Query: 480 LQEREE-----------------AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG 522 L E E A M+P +LS G + AP Sbjct: 504 LLEAETAAAPAAGPAPSGPTPAGAAEAGVDLMVPDTACWALLSTSGRLLRTADRTPIAPQ 563 Query: 523 LNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE-----------PLT 571 + D+F + V + + + S G + + + LP A GE P Sbjct: 564 GRRRKHDAFASVVPTTARGEIGALTSAGALHRLQAVDLPVA---GEPSAAPAMTAALPAA 620 Query: 572 GKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVM 631 + L G T+ ++ +MA +G V NR + L + V+ Sbjct: 621 ELVPLAKGETLVALVPLD----TVMALGTAHGVVKRVRPEWPLNRQVVDAVALKDGDAVV 676 Query: 632 PPVVIEDASDMLLAITQAGRMLMFPVSDL-PQLSKGKGNKIINIPSAEAARGEDGLAQLY 690 D +D L+ +T+ G++L + S + PQ G G I + + + + Sbjct: 677 GAAPAPDEADQLVFLTRTGQLLRYAASAVRPQGPAGGGVAGIRLAAGDTVL-------AF 729 Query: 691 VLPPQSTLTIHVGKRKIKLRPEELQKVT 718 + P ++LT RP + VT Sbjct: 730 GVAPAASLTETGADAAAHPRPAVVVTVT 757 >UniRef50_A6CC19 Type II DNA topoisomerase, A subunit n=3 Tax=Planctomycetaceae RepID=A6CC19_9PLAN Length = 802 Score = 709 bits (1831), Expect = 0.0, Method: Composition-based stats. Identities = 260/780 (33%), Positives = 418/780 (53%), Gaps = 50/780 (6%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM-SELGLNASAKF 60 SD E + + + T YLNY+M VI RALP + DGLKPVQRRI+Y M +L L A+AK Sbjct: 21 SDRIEYVPISDVTRRRYLNYAMSVITSRALPDVRDGLKPVQRRILYVMYHDLRLMANAKP 80 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 +K A+ GD G YHPHGD++ Y+A+V +AQ F+ R PL++GQGN+G+ AA RY Sbjct: 81 RKCAKICGDTTGNYHPHGDASVYDALVRLAQDFNLRSPLINGQGNFGSIMGLP-AAAARY 139 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RL+ +E L++EL T + PN+DGT EP +LPAR PN+L+NG GIAVGMAT+I Sbjct: 140 TEARLTGIAEHLMNELRYQTVEMRPNYDGTRDEPVVLPARFPNLLVNGVHGIAVGMATNI 199 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL EV +A + LI T+ QL+ ++GPD+P I+T + + +Y+ GRG V+ Sbjct: 200 PPHNLGEVIKACVHLIHHDDATVAQLMKHIKGPDFPMGGRIVTDKRSLTAVYKEGRGPVK 259 Query: 241 MRAVWKKEDGA-------VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHEN 293 +R WK E G +V+ ++P+ V +L +I + ++KLP + D+ DE+D +N Sbjct: 260 VRGEWKPEPGTRTKGVQRLVVYSVPYGVETGSLLSEIGGIVESRKLPQLVDVADETDDKN 319 Query: 294 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR----PAVKNLLEILSE 349 ++V+ + + D + VM L+ T+LE+++ +N+ + D P +L E+L Sbjct: 320 GLKIVLEIKPD-ADPETVMAFLYKHTNLEQNFSVNMTCLVPDESEVLVPRRCDLKEMLQY 378 Query: 350 WLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSR 406 +L FR +VR+R Y+L+ + +R+HIL+G + F ++D+ +++IR + LM+ Sbjct: 379 FLDFRFISVRKRFEYQLQLLERRIHILKGFAIIFNDLDKALKLIRASSGKQDAAKKLMAN 438 Query: 407 FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ 466 F L E Q AILEL+L ++KLE IR E +E E E ++++ ILAS++++ +++ EL+ Sbjct: 439 FPLDEIQTMAILELQLYRISKLEINTIREELAEKEAEAEKIRKILASDKRLWKVVENELK 498 Query: 467 ADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS-----AKGHDIDAP 521 A + + R++ L EE + E +V+S+ GW++ K + Sbjct: 499 ELADEFPEKRQTKLGSSEEITEFDPQAYIVRENTNVVVSREGWIKRVGRLKTKEGTQELA 558 Query: 522 GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGAT 581 + GDS A G + VVF S G +Y + +P + G GEPL+ + GA Sbjct: 559 KTRTREGDSVLAVAPGSTLDHVVFFSSDGVAYTLPIEQVPVSSGYGEPLSKHARMSDGAV 618 Query: 582 VDHMLMES---------------DDQKLLMASDAGYGFVCTFNDL-VARNRAGKALITLP 625 + + +L+ ++ G +F+ A +AG+ L Sbjct: 619 LVAAVTTDSRFTPEDKATKKQPLPTPHVLIVTEKGQFMRISFSLFRTASTKAGRKYCRLG 678 Query: 626 ENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGED 684 ++ V+ ++E+A + + TQ R+L + + LS GKG K I + + G Sbjct: 679 KDDRVVYAGLVEEA-ETMFIATQDARVLHCEIEEAALLSNAGKGVKGIRLEKGDQVIGV- 736 Query: 685 GLAQLYVLPPQSTL-TIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPR 743 L + P L I+ +K+ + G R G ++ QR EI P Sbjct: 737 ----LQLTRPSDCLRVINTAGKKMTFGQMK----YGVTSRGGKGVKTSQRSGFAEILYPP 788 >UniRef50_C5B4N9 DNA gyrase subunit A n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4N9_METEA Length = 894 Score = 708 bits (1828), Expect = 0.0, Method: Composition-based stats. Identities = 244/751 (32%), Positives = 390/751 (51%), Gaps = 60/751 (7%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 +R + E E++YL+Y M + RALP + DG+KPV RRI+++M+E A K KSA Sbjct: 18 VKRTSFTEEMEDSYLSYMMSTVTARALPDVRDGMKPVHRRIMFSMAESNFTADRKHVKSA 77 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 + VGDV+G+YHPHGD+A Y+AMV M Q +S RYPL+D QGN+G+ D+ AAMRYTESR Sbjct: 78 KVVGDVMGQYHPHGDTAIYDAMVRMGQHWSLRYPLIDPQGNFGSIDNDPP-AAMRYTESR 136 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 L + + L+++LG+G D+ PN+D + +EP +LPAR PN+L+NG GIAVGMAT+IPPH+ Sbjct: 137 LERLAGHLVADLGEGVVDFRPNYDSSCKEPVVLPARFPNLLVNGGIGIAVGMATNIPPHH 196 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 L E +A + + P TLD+++ ++ GPD PT +I R+ IR+ + GRG++R+ V Sbjct: 197 LGETIEACLLRLANPAVTLDEIMRVMPGPDLPTGG-VIHGRSGIRQAFATGRGAIRVSGV 255 Query: 245 WKKEDGA-----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 E+G +VI+ LP+ V A +E++A + KK+ + D+RDES + R+VI Sbjct: 256 ASVEEGKAGRRRIVIAQLPYLVVKAEFVEKLAELVEEKKIEGISDIRDESSDKAGIRIVI 315 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 R + D V+N L TD + +N+ + GRP +L++L E++ FRR+ VR Sbjct: 316 DVRKD-ADPAVVLNRLREKTDFVTNLNVNMTCLDSRGRPRTMGVLQVLGEFVDFRREVVR 374 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEII---RNEDEPKPALMS----------- 405 RR +RLEK + LH GL A L IDE++ +I + DE + AL++ Sbjct: 375 RRTMHRLEKTREDLHRQIGLYAATLRIDEIVALIRSSHDIDEARAALLALDFDTSGEFAQ 434 Query: 406 -------------RFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILA 452 F L++ Q AILE++L L LE KI EL E IL Sbjct: 435 LLFEVDPDVPVGDTFRLSDAQVRAILEMRLSRLTGLERDKIAERARELSVEIGGHLEILN 494 Query: 453 SERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS 512 + ++ ++++EL+ A+ D RR+ +++ A+S+ D++ + + + ++ G+V+ Sbjct: 495 VKAVLDGVVRRELEEIKAAFPDGRRTAIEDS-ALDALSDEDLVELKDIVVTVTAGGYVKR 553 Query: 513 AKGHDIDAPGLNYKA-----GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RG 565 D+ A KA D + + P++F + G ++A LP A Sbjct: 554 T---DLPAYMGRQKAADEAVEDPVATTIVCTTKTPLLFFTNRGLAHAEVAHKLPEAAPNV 610 Query: 566 QGEPLTGKLTLPPGATVDHMLMESDDQ------KLLMASDAGYGFVCTFNDLVARNRAGK 619 +G L L L TV ++ DD+ L+ +D G +D N+ GK Sbjct: 611 RGRALVNFLELKAEETVQAIVALPDDRAAIEKLSLIFVTDFGTIRRNDASDFARVNKGGK 670 Query: 620 ALITLPEN-----AHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK--GKGNKII 672 I L + ++ +++ D + ++ G F V+DL + G I Sbjct: 671 VAIKLEDENGEPQGKLVSVLLVSPEDD-VALASRDGLCCRFNVADLRVMKSRDSVGVAGI 729 Query: 673 NIPSAEAARGEDGLAQLYVLPPQSTLTIHVG 703 ++ + L + + G Sbjct: 730 SLGRKDKVISVSVLRHFEATGTEREAYLAGG 760 Score = 50.6 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 8/125 (6%) Query: 567 GEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAG--KALITL 624 GEP T +L + M+ +Q +L ++ G+ + + R G L Sbjct: 770 GEPATFELPSDR-----MLAMQEAEQLILSVTENGFAKRTSSHAYRITARGGQGVEAAKL 824 Query: 625 PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGE 683 + + ++ + D+L+ T AG+ +++P +++G +G + + +A Sbjct: 825 ADRTGDLVALMPVEEQDVLVITTDAGKTFRTSAAEVPIMARGTQGTRAFALEGRQAIVSV 884 Query: 684 DGLAQ 688 +A Sbjct: 885 VKIAA 889 >UniRef50_Q7UU73 DNA gyrase subunit A n=1 Tax=Rhodopirellula baltica RepID=Q7UU73_RHOBA Length = 825 Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats. Identities = 264/794 (33%), Positives = 408/794 (51%), Gaps = 73/794 (9%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 + + L ++ YLNYS+ VI RALP + DGLKPVQRR++Y MS L L++SAK K A Sbjct: 31 IQNIPLRFAAQDRYLNYSLSVITSRALPDVRDGLKPVQRRVLYTMSLLRLDSSAKHSKCA 90 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 + VGDV+GKYHPHGDS+ YEA+V M+Q FS R P++DG GN+G+ D + AAMRYTE R Sbjct: 91 KVVGDVMGKYHPHGDSSIYEALVRMSQSFSLRMPMIDGSGNFGSIDG-DNAAAMRYTECR 149 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 ++ + +L++L T + PN+DGT +EP +LP+R+P++L+NG TGIAVGMAT+IPPHN Sbjct: 150 MTPIASEVLADLSSRTVAFKPNYDGTREEPVVLPSRVPSLLVNGATGIAVGMATNIPPHN 209 Query: 185 LREVAQAAIALIDQPKTTLDQLL--DIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 L+EV A + L+ P+ QL+ D +QGPD+PT I ++ E+R+IY G G++++R Sbjct: 210 LKEVCNALLKLLANPEIKDYQLVAGDAIQGPDFPTGGHITNTKEELREIYATGTGTIKLR 269 Query: 243 AVWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 V + + + I+ +P V+ A ++E+IA + + KLP+V ++RD S + R+ Sbjct: 270 GVAEVAEKSRTGDTLRITEIPFGVNKAAMVERIAELVYSSKLPLVQEVRDLSTED--IRV 327 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLD-----GRPAVKNLLEILSEWLV 352 ++ + N D D+V+ +L+ T L+ ++ +NL + G P L EIL +L Sbjct: 328 DLLLKKN-ADADKVLAYLYKHTPLQTNFNVNLTCLTPTENPEVGAPKRLGLKEILWYFLH 386 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRF-- 407 FR D + RL L + KR+HILEGL + F +DE+I+IIR+ + + +M RF Sbjct: 387 FRLDVLTARLTNELRALEKRIHILEGLALIFDALDEIIKIIRSSEGKADAAEKIMKRFPV 446 Query: 408 ----------------GLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451 GL Q +AILELKL LA+LE + E + K D++ +L Sbjct: 447 KELTPAQARRKTRASNGLDAEQTDAILELKLYRLARLEINVVLDELKKKRKRVDEINKLL 506 Query: 452 ASERK------MNNLLKKELQADAQAYGDD----RRSPLQEREEAKAMSEHDMLPSEPVT 501 A +R ++K+ELQ+ YG+ RRS + E +E D + +E Sbjct: 507 ADDRDDYTSSGRWAIIKEELQSLISDYGNTPAGRRRSTIVVPTEEVEYTEEDFIVAEDCH 566 Query: 502 IVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP 561 ++++ GWV+ K D + GD+ A V G + + F S G Y I +P Sbjct: 567 VMVTVDGWVKRQK-QIADPSKSRLRQGDAVLACVAGNTRTTLAFFSSLGVCYTARMIDIP 625 Query: 562 SARGQGEPLTGKLTLPPGATVDHMLMES----------------DDQKLLMASDAGYGFV 605 ++ G GEP+ G + L L AS GY Sbjct: 626 ASTGFGEPIQKLFKFKDGERIIAALSMDPRILGDISEDPKGNYYPATHALAASTDGYALR 685 Query: 606 CTFNDLV-ARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQL- 663 RAG+ + A ++ V I ++ +LA++ R ++ P ++ L Sbjct: 686 FGLQPFAEPSTRAGRKFARVKPGASIVDVVPIA-GTETVLAVSADARAMVCPADEINYLS 744 Query: 664 SKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGR 723 GKG ++ + + D L L V R K + T RG Sbjct: 745 GAGKGVLLLKLAA------SDKLLGFKPSTGDRDLLNVVTNRGAKKTVSTAKYRTTSRGG 798 Query: 724 RGTLMRGLQRIDRV 737 RG ++ +I + Sbjct: 799 RGIELQKNGKIAEI 812 >UniRef50_C1EGN9 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EGN9_9CHLO Length = 963 Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats. Identities = 239/728 (32%), Positives = 368/728 (50%), Gaps = 43/728 (5%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 L LH +YL+Y+M VI+ RALP + DGLKPV RRI+YAM ELGL++ FKK AR V Sbjct: 112 LELHLEASQSYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDSKKPFKKCARVV 171 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 G+VLGK+HPHGD + Y+A+V MAQ FS LVDG GN+G+ D AAMRYTE RL Sbjct: 172 GEVLGKFHPHGDQSVYDALVRMAQDFSMSSALVDGHGNFGSLDADPP-AAMRYTECRLKP 230 Query: 128 YSE-LLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 +E +LL+++G D+ FDG+ EP +LPARLPN+L+NG+TGIAVGMAT IPPHNLR Sbjct: 231 AAEAMLLADIGLDAVDFTETFDGSQTEPAVLPARLPNLLINGSTGIAVGMATSIPPHNLR 290 Query: 187 EVAQAAIALIDQPK-TTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245 EVA A + P+ TL+ LL+++ PD+PT I+ R +++Y G+G V +R Sbjct: 291 EVANALVRFASDPERCTLEDLLEVMPAPDFPTGGIIVQQRGGFKEMYRTGKGGVNLRGAA 350 Query: 246 KKED-----------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENP 294 E AVVI+++P+Q + A + EQIA + ++ + V D+RDESD + Sbjct: 351 TVEKVSGGGRNGQARDAVVITSIPYQTNKASLCEQIADLVNSRTIEGVSDVRDESDRDGM 410 Query: 295 TRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFR 354 +V + D + V++ L+A T L+ +NL + + P V +L+EI+ E+L FR Sbjct: 411 RVVVEI--RRGADANFVLDQLYARTKLQTRVSVNL-VGLVGREPKVLSLMEIMREFLAFR 467 Query: 355 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSR-FGLT 410 D V RR + L+K RLH++EG L D V+ IR + + AL + F L+ Sbjct: 468 CDAVERRARHELQKASGRLHVVEGYLAVQAAPDAVVAAIRAAKDGPTAQAALQEKPFWLS 527 Query: 411 ETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQ 470 E QAEA+L + LR L LE K++ E++EL + L G+L ++ + +E + Sbjct: 528 EKQAEAVLAMPLRRLTGLEHDKLKTEEAELTARVEDLTGLLGDRSRVIATVAREAKELRD 587 Query: 471 AYGDDRRSPLQEREE--AKAMSEHDMLPSEPVTIVLSQMGWVRS--------AKGHDIDA 520 +G DRR+ + + AK M+ + + P ++++ G+++ Sbjct: 588 TFGVDRRTDIDTDAQIHAKKMNVTLDMLNSPSLVIMTNRGYIKRIDPAVFSKQNRATRGR 647 Query: 521 PGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPP 578 + GD V+F GR +A+ +P S G P T L L Sbjct: 648 NMGKMRGGDEVTKVTHCNGLDTVLFFTDRGRVHAVRAFNIPQASTSALGTPFTRVLKLAE 707 Query: 579 GATVDHMLMES--------DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHV 630 G ++ ML + L + G ++ V GK + L + + Sbjct: 708 GESITAMLPVDTTEEPGEEGETSLCFVTARGLIKRTCASEFVGIRNNGKKALVLRKGDRL 767 Query: 631 MPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQL 689 +++ +++ ++ F + + G K + + Sbjct: 768 KHVDIVKKGDGIIIGGIDG-SVIHFDADSVRAQGRAAAGVKAMAFKPDGLDDTSEDDDTS 826 Query: 690 YVLPPQST 697 LP ++ Sbjct: 827 EALPANAS 834 Score = 53.3 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 7/100 (7%) Query: 594 LLMASDAGYGFVCTFNDLVARNRA--GKALITLPENAHVMPPVVI---EDASDMLLAITQ 648 L S G G + ++RA GK + L + + + + D + ++ +Q Sbjct: 856 LFFVSSDGRGKRISVAQFAQQSRAGRGKKGMGLMKGSKLAALCLTGLDSDEHEHVIIGSQ 915 Query: 649 AGRMLMFPVSDL-PQLSK-GKGNKIINIPSAEAARGEDGL 686 G M + V+ + PQ + KG ++ + + R L Sbjct: 916 GGVMNRYDVASIRPQSGRAAKGVNVMKLSDGDTVRDITLL 955 >UniRef50_Q4A7J5 DNA gyrase subunit A n=5 Tax=Mycoplasma hyopneumoniae RepID=Q4A7J5_MYCH7 Length = 853 Score = 707 bits (1825), Expect = 0.0, Method: Composition-based stats. Identities = 238/750 (31%), Positives = 402/750 (53%), Gaps = 37/750 (4%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 ++D + + + + ++L+YSM VI+ RALP + DGLKPV RRI+Y M+ELG+ + + Sbjct: 42 ITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSY 101 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VGDVLGKYHPHGD++ YE+MV MAQPFS RYPLVDG GN+G+ D + AAMRY Sbjct: 102 KKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDGDE-AAAMRY 160 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RLSK S ++ L + T D+ PN+D + EP++LPA+ PN+L++G +GIAVGM T I Sbjct: 161 TEARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKI 220 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL E+ + I PK +++L+ + GPD+PT A I + I + Y G+GS Sbjct: 221 PPHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATI-YGKKGINQAYLTGKGSFI 279 Query: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 +RA K E+ ++ +P++V ++E++A +RNKK+ + D+RDES Sbjct: 280 IRAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIR 339 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 + + + + ++N L+ +TDL+ +Y IN+ + ++G P + NL +I + +L ++ Sbjct: 340 VVFEIKK--GFSPEIILNKLYHSTDLQINYSINM-LALVNGVPKLMNLAQIFNYYLEHQK 396 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTET 412 + R LN+ LEK ++L++LEG+ VA NIDEVI+II++ + L + L Sbjct: 397 EINLRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNPG 456 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 Q +AI+E++L L L K+ E EL+ E +++ I+ S +K+ +L+ ++ + + Sbjct: 457 QTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPKKLIDLIIEQHKNVVAQF 516 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG--------LN 524 GD RRS + E + E D++ E V I L+Q +V+ + N Sbjct: 517 GDPRRSEII--PEIDCLDEEDLIADEQVIISLTQNNYVKKMALDEYRLQNRGGIGTLASN 574 Query: 525 YKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATV 582 + D K+ + ++ + S+ + + + +P S +G+G P+ + L ++ Sbjct: 575 HYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKGIPILNLIKLEKNESI 634 Query: 583 DHMLM---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDA 639 +++ E D+ L+ S G + + GK + L EN +++ + + Sbjct: 635 SNLIPWNQEYDNHWLITVSAFGNIKKTALSAFRNITKNGKIALKLAENDYLVSAFIAPNN 694 Query: 640 SDM-LLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQST 697 D+ +L + G + + + L + G K I + G + Sbjct: 695 PDLNILIGSSQGFVNRWSIKLLRDSGRTAIGVKGIKLEEGHKIIGACFAFD------NNF 748 Query: 698 LTIHVGKRKIKLRPEELQKVTGERGRRGTL 727 + K K ++TG R +G + Sbjct: 749 IFSLSKKGFGKKTQVGEYRLTG-RTTKGLM 777 Score = 70.7 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 66/202 (32%), Gaps = 17/202 (8%) Query: 500 VTIVLSQMGWVRSAKGHDIDAPGLNYK------AGDSFKAAVKGKSNQPV--VFVDSTGR 551 I +S G ++ N K D +A +N + + S G Sbjct: 648 WLITVSAFGNIKKTALSAFRNITKNGKIALKLAENDYLVSAFIAPNNPDLNILIGSSQGF 707 Query: 552 SYA--IDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFN 609 I + G + L G + D+ + S G+G Sbjct: 708 VNRWSIKLLRDSGRTAIG---VKGIKLEEGHKIIGACFAFDNNFIFSLSKKGFGKKTQVG 764 Query: 610 D--LVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-G 666 + L R G + + +++ I++ + ++ T+ G + + +P +S+ Sbjct: 765 EYRLTGRTTKGLMSLDAKKAGNLVFISAIKNNQEAII-TTKKGFAIRIDLDMVPIISRKT 823 Query: 667 KGNKIINIPSAEAARGEDGLAQ 688 KG KII + + +++ Sbjct: 824 KGVKIITLKKGDEITAVSLISK 845 Score = 42.2 bits (98), Expect = 0.078, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 46/135 (34%), Gaps = 7/135 (5%) Query: 510 VRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEP 569 +R + I G+ + G A N + + G + + R G Sbjct: 716 LRDSGRTAIGVKGIKLEEGHKIIGACFAFDNNFIFSLSKKG--FGKKT-QVGEYRLTGRT 772 Query: 570 LTGKLTLPPGA--TVDHMLMESDDQKLLMASDAGYGFVCTFN--DLVARNRAGKALITLP 625 G ++L + + ++Q+ ++ + G+ + +++R G +ITL Sbjct: 773 TKGLMSLDAKKAGNLVFISAIKNNQEAIITTKKGFAIRIDLDMVPIISRKTKGVKIITLK 832 Query: 626 ENAHVMPPVVIEDAS 640 + + +I Sbjct: 833 KGDEITAVSLISKNE 847 >UniRef50_P72525 DNA topoisomerase 4 subunit A n=182 Tax=Firmicutes RepID=PARC_STRPN Length = 823 Score = 705 bits (1820), Expect = 0.0, Method: Composition-based stats. Identities = 235/751 (31%), Positives = 395/751 (52%), Gaps = 40/751 (5%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 MS++ + ++L + + YS Y+I DRALP I DGLKPVQRRI+Y+M++ + Sbjct: 1 MSNI-QNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSY 59 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 +KSA++VG+++G +HPHGDS+ Y+AMV M+Q + R LV+ GN G+ D AAMRY Sbjct: 60 RKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPP-AAMRY 118 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RLS+ + LL ++ + T + NFD T +EP +LPA PN+L+NG+TGI+ G ATDI Sbjct: 119 TEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDI 178 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL EV AA+ +ID P +D+L++ + GPD+PT A II R EI+K YE G+G V Sbjct: 179 PPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVV 237 Query: 241 MRAVWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 +R+ + E +VI +P++++ A ++++I N K+ + ++RDESD + Sbjct: 238 VRSKTEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDG-L 296 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFR 354 R+ I + + + + V+N+LF TDL+ +Y N NM+ +D P ++ ILS ++ R Sbjct: 297 RIAIELKKD-ANTELVLNYLFKYTDLQINY--NFNMVAIDNFTPRQVGIVPILSSYIAHR 353 Query: 355 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTE 411 R+ + R + EK KRLHI+EGL+ +DEVI +IR N+ + K L + TE Sbjct: 354 REVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTE 413 Query: 412 TQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQA 471 QAEAI+ L+L L + + ++ E++EL ++ L I+ ER M NL+KKEL+ + Sbjct: 414 EQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKK 473 Query: 472 YGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNY---KAG 528 + R S L++ +A + ++ E + +++ G+++ A L + Sbjct: 474 FATPRLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDD 533 Query: 529 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKL-TLPPGATVDHM 585 D K+ Q ++ S G L R + GE L+ + + ++ Sbjct: 534 DRLIFVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYV 593 Query: 586 LM---ESDDQKLLMASDAGYGFVCTFNDLVA----RNRAGKALITLPENAHVMPPVVIED 638 + D + G + R+++ K + ++ I+ Sbjct: 594 EVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIK- 652 Query: 639 ASDMLLAITQAGRMLMFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVLPPQST 697 D ++ ++Q G L F + ++P + K G K +N+ +D L ++ S Sbjct: 653 -LDDVVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKE------DDVLQSGFICNTSSF 705 Query: 698 LTIHVGKRKIKLRPEELQKVTGERGRRGTLM 728 + ++ EE+ + R +RG + Sbjct: 706 YLLTQRGSLKRVSIEEI--LATSRAKRGLQV 734 >UniRef50_O67108 DNA gyrase subunit A n=2 Tax=Aquificaceae RepID=GYRA_AQUAE Length = 744 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 254/737 (34%), Positives = 413/737 (56%), Gaps = 48/737 (6%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 + + E + AY++Y+M VI+ RA+P + DGLKPVQRRI+Y+M E+GL FKKSAR Sbjct: 9 EIPIEEEVKQAYIDYAMSVIVGRAIPDVRDGLKPVQRRILYSMYEMGLLPDKPFKKSARI 68 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VG+ LGKYHPHGD A YEA+V MAQ F+ RYPL+ GQGN+G+ D A MRYTE++LS Sbjct: 69 VGETLGKYHPHGDQAVYEALVRMAQDFTMRYPLIIGQGNFGSIDGDP-AAQMRYTEAKLS 127 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 + +L+++ + T D+ PNFD TL EP++LP++ PN+L NGT+GIAVG+AT IPPHNL Sbjct: 128 PLAVEMLTDIDKDTVDFQPNFDDTLMEPEVLPSKFPNLLCNGTSGIAVGLATSIPPHNLT 187 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 EV A + L P+ ++D++++I++GPD+PT +I + A++++IY+ GRG ++++ Sbjct: 188 EVGNALVKLAQNPQISVDEIMEILKGPDFPTGG-VIENFAQVKEIYKTGRGIIKVKGKAH 246 Query: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 E +VI+ +P+QV+ A ++++IA +RN K+ + D+RDE+D E R+V+ Sbjct: 247 VEKVQGGRERIVITEIPYQVNKAELIKKIADNVRNGKIKEISDIRDETDKEG-IRIVVEL 305 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 + + ++V+ L+ T LEK + +NL ++ +D P + ++ +L E++ R + + RR Sbjct: 306 KRD-AKGEEVLKKLYKYTPLEKGFPVNL-VVLIDKEPKLVDIKTLLREFIKHRLEVILRR 363 Query: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEAIL 418 Y L+KV RLHI+EGLL A ID++IE IR + A LM FGL+E QA+A+L Sbjct: 364 SKYFLKKVQDRLHIVEGLLKAINFIDDIIERIRRSKDASEARNYLMEEFGLSEKQAQAVL 423 Query: 419 ELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRS 478 +L+L+ L LE K+ E+ EL ++ + + ++ASE + + +E + + YGD RR+ Sbjct: 424 DLRLQRLTSLEREKLLEEEKELREKIEYYKKLVASEGERIKVFIEETEELVKKYGDKRRT 483 Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGK 538 + +E K S +T+ + Q G + + ++ ++ Sbjct: 484 FIGGVKEVKEGS---------ITVAVLQDGSIIPVEELPLEKA--------PVVNILRVP 526 Query: 539 SNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMAS 598 + + V + GR Y I S QG ++ L V + E +LL+A+ Sbjct: 527 FTEGLFLVSNRGRVYWIAG----SQALQGSKVS--LKSREEKIVGAFIREKFGNRLLLAT 580 Query: 599 DAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVS 658 GY + + + G +I L E V+ D + +L T+ GR+ F V Sbjct: 581 KKGYVKKIPLAEFEYKAQ-GMPIIKLTEGDEVVSIASSVDET-HILLFTKKGRVARFSVR 638 Query: 659 DLPQ-LSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGK-RKIKLRPEELQK 716 ++P +G + I + + G L + + L + K R K+ EE+ K Sbjct: 639 EVPPSTPGARGVQGIKLEKNDETSG------LRIWNGEPYLLVITAKGRVKKISHEEIPK 692 Query: 717 VTGERGRRGTLMRGLQR 733 RG +GT + G + Sbjct: 693 --TNRGVKGTEVSGTKD 707 >UniRef50_D2MM14 DNA topoisomerase IV, A subunit n=2 Tax=Erysipelotrichaceae RepID=D2MM14_9FIRM Length = 830 Score = 700 bits (1806), Expect = 0.0, Method: Composition-based stats. Identities = 220/727 (30%), Positives = 372/727 (51%), Gaps = 28/727 (3%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 L + + Y+ Y+I +RALP + DGLKPVQRRI+YAM G ++KSA+TVG Sbjct: 18 LEDIMGAGFGRYAKYIIQERALPDVRDGLKPVQRRILYAMYNDGNTHDKPYRKSAKTVGL 77 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 V+G YHPHGDS+ Y+AMV M+Q + R P +D GN G+ DD AAMRYTE+RL+K + Sbjct: 78 VIGNYHPHGDSSVYDAMVRMSQDWKVRMPFIDMHGNNGSIDDDP-AAAMRYTEARLAKVT 136 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 +++ +L + T + PNFD T EP +LP P +L+NG TGIA G AT++PPHN+ EV Sbjct: 137 QVMEEDLDKDTVEMSPNFDDTDIEPTVLPVSFPVMLVNGATGIAAGYATNMPPHNINEVI 196 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED 249 A I I + +L+ ++DI+ GPD+PT I+ IR+ + G+G + +RA + Sbjct: 197 DATIYRIQNAECSLNDVMDILPGPDFPTGG-IVQGEEGIREAFTTGKGRIVVRAKTEIIQ 255 Query: 250 ----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNR 305 +VI+ +P++V +++++ ++++ + D+RDESD ++ V + Sbjct: 256 EKNLQQIVITEIPYEVVKGNLVKKMDEIRISREVDGLIDVRDESDRNGLRIVIDVRK--D 313 Query: 306 VDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYR 365 VD + ++ + F TDL+ Y N N+ + RP LL +L ++ FR++ V RR + Sbjct: 314 VDANLILQYFFKNTDLQVYYNYN-NVAIMRERPVQVGLLGLLDAFIDFRKEVVLRRSRFE 372 Query: 366 LEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEAILELKL 422 L K+ R+HI+EGL+ A +DEVI IIR ++ + K L+ FG E QAEAI+ L+L Sbjct: 373 LNKMEARVHIIEGLIKAVSVLDEVIAIIRASKDKADAKFRLIENFGFDEVQAEAIVTLRL 432 Query: 423 RHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQE 482 L+ + + +R E ++L + ++ + IL +E + +L+ +EL+ + YGD RR+ ++ Sbjct: 433 YRLSNTDIVSLRNEFAQLVNQIEETKSILENESVLRHLMVQELRQVKENYGDARRTKIEA 492 Query: 483 REEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDA---PGLNYKAGDSFKAAVKGKS 539 + + +S+ M+PSE V I +S+ G+++ +A K GD + + Sbjct: 493 KIDEINISKEAMIPSEQVMITVSKDGYLKRVSLRSFNAVRDQETGLKTGDQLIGQREVNT 552 Query: 540 NQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLMESD---DQKL 594 ++ S G + + + + G L + + V ++ + + Sbjct: 553 LDTLLLFTSKGNYAMVPVWQIDDEKWKEIGSHLNKLVRVDSEEKVISAIVVKNFDSYAWI 612 Query: 595 LMASDAGYGFVCTFNDL-VARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRML 653 + + +D V R I L E V + S +L +T+ G L Sbjct: 613 TLVTKGNKIKKTKLSDWKVERTSRLFKAINLEEKDEVCAA-FMTYQSQEVLVVTKDGYAL 671 Query: 654 MFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEE 713 +P++ KG + + ED +A + L + K E Sbjct: 672 RMSQDQIPEVKASKGVQAMK------VAFEDEVAFATSVYSSDNLLFLTDTLQAKRIHLE 725 Query: 714 LQKVTGE 720 +++G Sbjct: 726 DLRLSGR 732 >UniRef50_Q2ST76 DNA gyrase, A subunit n=7 Tax=Mollicutes RepID=Q2ST76_MYCCT Length = 795 Score = 699 bits (1805), Expect = 0.0, Method: Composition-based stats. Identities = 248/745 (33%), Positives = 405/745 (54%), Gaps = 36/745 (4%) Query: 23 MYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSAC 82 M VI+ RALP + DGLKPV RRI+YAM++LG+ + KKSAR VG+V+GKYHPHGDSA Sbjct: 1 MSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSARIVGEVIGKYHPHGDSAV 60 Query: 83 YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTAD 142 YE MV MAQ FSYRYPL+DG GN+G+ D AAMRYTE+RL+K S L+ ++ T Sbjct: 61 YETMVRMAQEFSYRYPLIDGHGNFGSIDGDG-AAAMRYTEARLAKISNYLIKDIDMDTVP 119 Query: 143 WVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTT 202 ++ N+D + EP L LPN+L+NGT GIAVGMAT IPPHNL+EV A A ID T Sbjct: 120 FIDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNLKEVVSAINAYIDNNDIT 179 Query: 203 LDQLLD-IVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGA----VVISAL 257 +D++LD + GPD+PT A + +++R+ Y+ GRGSV +RA E+ V++ + Sbjct: 180 IDEILDNHILGPDFPTGALMTNG-SKMREGYKTGRGSVIIRAKIDFEENKKHDRFVVTEI 238 Query: 258 PHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFA 317 P+Q + A+++E+IA +++K + + D+RDES++E R++I + + + D V++ L+ Sbjct: 239 PYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEG-IRIIIELKKD-ANPDVVLSKLYK 296 Query: 318 TTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILE 377 T L+ S+ INL + + + +L I+ ++ F+ + + +R + K+ KR HILE Sbjct: 297 YTALQSSFSINLLTLNNNLP-VLLDLKTIIKNYVEFQVNVIIKRSIFEKNKLTKRYHILE 355 Query: 378 GLLVAFLNIDEVIEIIRN---EDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIR 434 L +A N+D+VI II+N +E K L +++ E Q +AIL+++L+ L LE KI Sbjct: 356 ALHIALDNVDDVINIIKNSKTSEEAKIQLTNKYNFDEEQNKAILDMRLQRLVGLERDKIT 415 Query: 435 GEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDM 494 E + +++ L ++ ++ + NN+LK +L A +GD+RR+ L + EE + + ++ Sbjct: 416 LEMTNIKERLTYLDILINTKEEQNNVLKNQLNEIADKFGDNRRTELID-EELINIEDEEL 474 Query: 495 LPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKA-------GDSFKAAVKGKSNQPVVFVD 547 +P I+LSQ G++R + + D A GK+ V+F Sbjct: 475 IPDLKWMILLSQEGYIRRINPDEFRIQKRGGRGVSVNAEPNDPIDIATMGKAKDWVLFFT 534 Query: 548 STGRSYAIDPITL--PSARGQGEPLTGKLT-LPPGATVDHMLMESDDQ----KLLMASDA 600 ++G+ Y + S +G P+ L L + +L +++ L + Sbjct: 535 NSGKVYRTKLYNIRSYSRTARGLPIVNFLNDLTSEDKITAILPLRNNKEKFNYLTFVTQK 594 Query: 601 GYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDL 660 G ++ NR GK I L EN ++ V D + ++G+++ S + Sbjct: 595 GMIKRTKISEFENINRNGKKAINLRENDQLVS-VFATTGQDTIFIANESGKVIRIKESVV 653 Query: 661 PQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTG 719 S+ G G + + + + + G +L + +T K K P + +++G Sbjct: 654 NPQSRVGSGVRALKLETNDVVVGAISSFKL------THITTVSNKGLFKKTPIDDYRISG 707 Query: 720 ERGRRGTLMRGLQRIDRVEIDSPRR 744 G+ +M QR + + R Sbjct: 708 RNGKGIKVMNLNQRTGKFKAIIDAR 732 >UniRef50_D2REE0 DNA gyrase, A subunit n=3 Tax=Archaeoglobaceae RepID=D2REE0_ARCPR Length = 738 Score = 693 bits (1790), Expect = 0.0, Method: Composition-based stats. Identities = 243/727 (33%), Positives = 401/727 (55%), Gaps = 55/727 (7%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 + E ++AYL+Y+M VI+ RALP + DGLKPVQRRI+YAM E+GL K AR VG Sbjct: 9 IAEELKDAYLDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGLTHDKPHVKCARVVGH 68 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 VLG YHPHGD+ YEA+V MAQ FS RYPL+DGQGN+G+ D + AAMRYTE RL++ + Sbjct: 69 VLGHYHPHGDAPVYEALVRMAQDFSMRYPLIDGQGNFGSIDGDEP-AAMRYTECRLTEIA 127 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 E +L ++ + T D+ PNFD + QEP +LPA++PN+L+NG TGIAVGM T+IPPHN+REV Sbjct: 128 EKMLEDIDKNTVDFQPNFDASKQEPVVLPAKIPNLLINGCTGIAVGMMTNIPPHNIREVC 187 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED 249 IA I P ++++L++ ++GPD+PT I+ R I + Y G+G + +R E+ Sbjct: 188 DGIIAYIKNPNISIEELMNFIKGPDFPTGGVIV-GRDGIIEAYRTGKGKIILRGKVDVEE 246 Query: 250 GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMD 309 ++I +P+ V+ A+++E+IA ++ KL + +RDESD E R+VI + D Sbjct: 247 DKIIIREIPYMVNKAKLVEKIADLIKKDKL-LAKTVRDESDREG-IRVVIELKE---DPY 301 Query: 310 QVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKV 369 + L+ T L+ ++ + + + ++ P + NL E+++ ++ RR+ VRR+ Y L+K Sbjct: 302 SALKKLYDHTPLKVTFNVVM-LALVNNEPKLLNLKELIAHYVNHRREVVRRKAEYELKKA 360 Query: 370 LKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAEAILELKLRHLA 426 +R HI+EGL+ A +DEVI +I+ D K LM +TE QAEAIL+L+L+ L Sbjct: 361 EERNHIVEGLIRAIEKLDEVINLIKQSDSTKNAKEGLMKLLRITEKQAEAILQLRLQMLT 420 Query: 427 KLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEA 486 +LE + E +EL+ D+L+ ILA ++++ ++ +EL+ + +GD+RR+ + ++E Sbjct: 421 RLEYESLMKEFNELKGRIDELKSILADPKRVDEIIVEELREVKRKFGDNRRTEIIDKEIL 480 Query: 487 KAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFV 546 K + E + ++ G ++ G ++ ++ SN ++ Sbjct: 481 KEV-------VEEFGVAVTLDGQIKRF------EIGKALRSNPKI--LLRAMSNLDILLF 525 Query: 547 DSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVC 606 S ++Y+I +P PL+ ++ V+ ++ D +++ S G Sbjct: 526 SSD-KAYSIHARDIP---LDFTPLSKFIS---AEKVETGVVAKGD--VVILSKDGNIKKV 576 Query: 607 TFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK- 665 + RAG ++ + ED ++ T+ G ++ F S++P+ + Sbjct: 577 RLEEFANAKRAGIIA-----GENIGFARLYEDGD--VIIATKNGYIVRFRSSEIPEYGRS 629 Query: 666 GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVT-----GE 720 KG K I + D +A + + L + K P + ++T G Sbjct: 630 AKGVKAITLREG------DEIAWMSIGKGDYVLIL-TRDGYAKKVPIDEFRLTNRGAMGV 682 Query: 721 RGRRGTL 727 RG RG + Sbjct: 683 RGVRGEI 689 >UniRef50_B7KIH9 DNA topoisomerase (ATP-hydrolyzing) n=6 Tax=Cyanobacteria RepID=B7KIH9_CYAP7 Length = 848 Score = 693 bits (1788), Expect = 0.0, Method: Composition-based stats. Identities = 237/769 (30%), Positives = 389/769 (50%), Gaps = 71/769 (9%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 ALH+ E +YL Y+M VI+ RALP + DG+KPV RRIVYAM ELGL A ++K AR VG Sbjct: 17 ALHQEMERSYLEYAMSVIVGRALPDVRDGMKPVHRRIVYAMHELGLTADRPYRKCARVVG 76 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 DVLGKYHPHGD A Y+A+V M Q FS RYPL+ G GN+G+ D+ AAMRYTE+RL+ Sbjct: 77 DVLGKYHPHGDQAVYDALVRMVQEFSSRYPLLAGHGNFGSVDNDPP-AAMRYTETRLAPI 135 Query: 129 SEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 + +L + + D+ NFD + QEP +LPA+LP +LLNG +GIAVGMAT+IPPHNL E Sbjct: 136 GQEAVLGNISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCSGIAVGMATNIPPHNLGE 195 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK- 246 + IALID+P+ +QL +I+ GPD+PT +II + I++ Y G+G + ++ V Sbjct: 196 IVDGLIALIDRPQLKDEQLWEIIPGPDFPTGGKIIDTE-GIKEAYRTGKGIIPVQGVTHV 254 Query: 247 ----------KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 KE A+V++ LP+QV+ + +E++A + +L + D+RDESD + R Sbjct: 255 ETISLEGRRPKERTAIVVTELPYQVNKSGWIEKVADLVNQGRLEGIADIRDESDRQG-MR 313 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 +VI + +V+ L+ T L+ ++ + + + +D +P +L E+L E+L FR Sbjct: 314 VVIELKR-EFKTKKVLEDLYKQTALQSNFGV-ILLALVDNKPCQLSLRELLEEFLNFREQ 371 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQ 413 T+ R+ + L + RLH+LEGLL+A N+D+VI I+RN + K ++E Q Sbjct: 372 TLTRQYRHELTQAQTRLHLLEGLLIALRNLDQVINILRNAPDGTTAKQKFQEELTISEEQ 431 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 A++IL + +R L LE+ K++ E +L++ +QLQ +L ++ LKK+L+A + +G Sbjct: 432 ADSILAMPMRRLTGLEQQKLQTEYEDLQQRINQLQVLLNDRIELMKSLKKDLRALKRKFG 491 Query: 474 DDRRSPLQEREEAKAMSEHD-----------------------------------MLPSE 498 D+RR+ + + SE P + Sbjct: 492 DERRTRIVSSAPTASKSEEKKGNPSTPPQPSKTTTPSKSSEPKAKDSSSLSLFTPQPPPK 551 Query: 499 PVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPI 558 + +++ G++ + ++ K D + + ++ + G++Y + Sbjct: 552 DAVLTITEQGYIYWQSAAEFNSISSIKKGTDFPIYTQRIQQQDSLIVITDQGKAYPVSGS 611 Query: 559 TLPSARGQGEPLTGKLT---LPPGATVDHMLMESDDQK---LLMASDAGYGFVCTFNDLV 612 +P Q L L + + + L++ + G + ++L Sbjct: 612 EIPPQESQPCSLLNLLPNSVQKNSQKIASYFLFPQQKNLSELILLTGQGRIKRLSMSELE 671 Query: 613 ARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPV--SDLPQLSK-GKGN 669 G +LI L ++ + + + S + T GR+L +P + + +GN Sbjct: 672 QIGNRGLSLIKLKDDDRL-GYLSLTSESHEVAIATNGGRVLRLTTRDEQIPLMGRNAQGN 730 Query: 670 KIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVT 718 + + + E G L + K P ++T Sbjct: 731 QALRLRYGENIVGC------VTPKIDDNLLLITQSGYGKRIPVNSLRIT 773 Score = 65.3 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 68/193 (35%), Gaps = 18/193 (9%) Query: 502 IVLSQMGWVRSAKGHDIDAPG------LNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAI 555 I+L+ G ++ +++ G + K D + V + GR + Sbjct: 654 ILLTGQGRIKRLSMSELEQIGNRGLSLIKLKDDDRLGYLSLTSESHEVAIATNGGRVLRL 713 Query: 556 --DPITLP--SARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 611 +P QG L L G + + D LL+ + +GYG N L Sbjct: 714 TTRDEQIPLMGRNAQG---NQALRLRYGENIVGCVTPKIDDNLLLITQSGYGKRIPVNSL 770 Query: 612 VARNRAGKA---LITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GK 667 + G+ + + +++ ++ +T R L+ P+ + K G Sbjct: 771 -RITKLGEIGTMALQFSSKTDNLAGMILAKPKKEVILVTNQERRLIIPIDSVGIWGKDGV 829 Query: 668 GNKIINIPSAEAA 680 G++++ + E+ Sbjct: 830 GDQVVKLKPQESI 842 >UniRef50_A4S991 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S991_OSTLU Length = 897 Score = 691 bits (1784), Expect = 0.0, Method: Composition-based stats. Identities = 256/796 (32%), Positives = 400/796 (50%), Gaps = 77/796 (9%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 + L + +YL+Y+M VI+ RALP DGLKPV RRI+Y M ELGL A +K AR V Sbjct: 38 VELASEAKTSYLSYAMSVIVGRALPDARDGLKPVHRRILYGMHELGLRADKPHRKCARVV 97 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 GDVLGKYHPHGD + YEA+V +AQ FS PLVDG GN+G+ DD AAMRYTE RL+K Sbjct: 98 GDVLGKYHPHGDGSVYEALVRLAQDFSMSAPLVDGHGNFGSLDDDPP-AAMRYTECRLNK 156 Query: 128 YSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 +E LL+++G ++ FDG+ EP++LPAR+PN+L+NG++GIAV +AT++ PHNL Sbjct: 157 LAEKGLLADIGNECVNFTETFDGSQTEPEVLPARVPNLLINGSSGIAVAVATNMAPHNLG 216 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 E A AL P +LD+L+ ++ PD+PT ++T+++ +++IYE G+G V +R Sbjct: 217 ESVDALCALAKNPDCSLDELMALLPAPDFPTGG-VVTNKSGMKEIYETGKGGVTLRGRAT 275 Query: 247 KE----------DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 E AVVIS +P+Q + AR++EQIA + + + + D+RDESD + R Sbjct: 276 IERVSAARGSLDKDAVVISEIPYQTNKARLVEQIADHVNGRTIDGISDIRDESDRDG-MR 334 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 +VI + D V+ L+A T LE + +N N+ +D +P V L +IL E++ FR D Sbjct: 335 VVIEIKRGY-DAASVLEELYAKTKLEVKFFVN-NVALIDNKPTVMPLRQILDEFIKFRVD 392 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQ 413 T+ RR + L K R H++EG + + D V++IIR + L GL++ Q Sbjct: 393 TIERRTRFMLSKAQDRKHLVEGFSIVLADADGVVKIIRKSKDGPSASKKLRESHGLSDIQ 452 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 A++IL + LR L LE K+ E EL ++ QG+L+++ K+ ++L +E +A+ Sbjct: 453 ADSILAMPLRRLTGLEADKLDAELKELNEQIAHFQGLLSNKSKVIDVLVQEAMEAKEAFA 512 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GLNY 525 RR+ E+ E+ + E D P + + + LS+ G+V+ + A Sbjct: 513 RPRRTS-VEQIESLSGVEDDSPPKDNI-LTLSERGYVKRICPKNFGAQNRGTRGKRMSKL 570 Query: 526 KAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTL--PPGAT 581 +A D A+ K + ++F GR + +P + G P T L Sbjct: 571 RANDELSKAMHCKDSDQILFFSDRGRVQKLSAKAIPQSELNTIGVPATSLLNTFAKRNQN 630 Query: 582 VDHMLMES-------DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPV 634 V ML + DDQ ++M + G V + ++ GK +ITL + + + Sbjct: 631 VTAMLSTNMKQGEVADDQVVVMLTSQGKVSVASAASMLGH--KGKKVITLDKGDRLQQVM 688 Query: 635 VIEDASDMLLAIT---QAGRMLMFPVSDLPQLSKG----KGNKIINIPSAEAARGEDGL- 686 + + + T G +L V D + G K + A ED Sbjct: 689 FARTSDHLFITGTGKAGKGLILHCRVGDFRVVKSACRPISGIKTMGEKKVAEAVVEDAGD 748 Query: 687 ----------------AQLYVLPPQS----------TLTIHVGKRKIKLRPEELQKVTGE 720 + ++P + + K K K+ ++ G Sbjct: 749 DEDDDEDDGELLPPKTVGMAIVPGERMVSASEEFGPFILFTTKKGKGKVVAANSYRLLG- 807 Query: 721 RGRRGTLMRGLQRIDR 736 RGR G + ++ D Sbjct: 808 RGRSGVMCMKFKKGDD 823 Score = 54.1 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 42/247 (17%), Positives = 78/247 (31%), Gaps = 57/247 (23%) Query: 495 LPSEPVTIVLSQMGWVRSAKGHDI----DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTG 550 + + V ++L+ G V A + + GD + + +++ +F+ TG Sbjct: 644 VADDQVVVMLTSQGKVSVASAASMLGHKGKKVITLDKGDRLQQVMFARTSDH-LFITGTG 702 Query: 551 ---------------RSYAIDPITLPSARGQGE--------------------------P 569 R + + GE P Sbjct: 703 KAGKGLILHCRVGDFRVVKSACRPISGIKTMGEKKVAEAVVEDAGDDEDDDEDDGELLPP 762 Query: 570 LTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFND--LVARNRAGKALITLPEN 627 T + + PG + E +L + G G V N L+ R R+G + + Sbjct: 763 KTVGMAIVPGERMVSAS-EEFGPFILFTTKKGKGKVVAANSYRLLGRGRSGVMCMKFKKG 821 Query: 628 AHVMPPVVI------EDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKIINIPSAEA 679 + +D +D +L T G V+DLP+ S G II + + +A Sbjct: 822 DDDALATITLVDRIGDDVTDEVLLSTTGGISNRIAVNDLPKRSDPLALGAAIIKLDATDA 881 Query: 680 ARGEDGL 686 + + L Sbjct: 882 LKSANLL 888 >UniRef50_B3TAI1 Putative DNA gyrase/topoisomerase IV, subunit A n=1 Tax=uncultured marine microorganism HF4000_APKG8D23 RepID=B3TAI1_9ZZZZ Length = 898 Score = 691 bits (1784), Expect = 0.0, Method: Composition-based stats. Identities = 240/748 (32%), Positives = 368/748 (49%), Gaps = 74/748 (9%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 M++ R + + E +Y+NY+M VI+ RALP + DGLKPV RRI++ M + G + Sbjct: 1 MAENLLRRDISDEMEESYINYAMSVIIGRALPDVRDGLKPVHRRILWGMHQAGHTHDKGY 60 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KSAR+VG+V+GKYHPHGD A Y+ MV MAQ FS RYPL+DGQGN+G+ D AAMRY Sbjct: 61 SKSARSVGEVMGKYHPHGDQALYDTMVRMAQDFSLRYPLIDGQGNFGSIDGDPP-AAMRY 119 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TESRL + S+ +L ++ + T D PNFD T EP +LPARLPN+LLNG+ GIAVGMAT I Sbjct: 120 TESRLDRLSQHMLDDINKDTIDMEPNFDDTETEPTVLPARLPNLLLNGSDGIAVGMATKI 179 Query: 181 PPHNLREVAQAAIALIDQ-------------PKTTLDQLLDIVQGPDYPTEAEIITSRAE 227 PPHNL EVA A +++ PK + ++ ++GPD+PT A I Sbjct: 180 PPHNLNEVAAAIKFHVEKVVEQNRKIGLDNPPKIDASEYMEYLKGPDFPTGATI-HGVDG 238 Query: 228 IRKIYENGRGSVRMRAVWKKED----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVD 283 I +Y G G ++R+ + ++ +V+ ++P+QV A +L+ IA +R + + Sbjct: 239 ILDMYRTGNGRFQIRSDVEVQEDSRGKRLVVHSIPYQVKKAGMLQGIAELVRKDIIKGIR 298 Query: 284 DLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNL 343 D+RDES E R+VI + N D V+N L+ ++ L++SY N+ M L+G P +L Sbjct: 299 DIRDESSKEG-IRVVIEIKQN-ADPHAVLNQLYQSSRLQESYSANM-MGILNGEPVQLDL 355 Query: 344 LEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED------ 397 IL ++ R V RR + +K R HIL GLL A + E+IE+ R+ D Sbjct: 356 RTILHTYVRHRESVVERRTQFEFDKAEARAHILHGLLRAQKRMGEIIEVGRSSDSRDQFE 415 Query: 398 -----EPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILA 452 + K + RF ++ QA+AI E +L L KL ++ E +L+ Q IL Sbjct: 416 QYLRGDEKYPKIRRFDFSDKQAKAIAERRLYQLTKLNVQEVADELKKLKGAIKDYQNILG 475 Query: 453 SERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS 512 S + N++ EL +GD+RRS + +M D++ + + I L++ ++R Sbjct: 476 SRIRRLNIIISELDEVVDRHGDERRSRIDPMP--LSMDREDLVAEQAIVISLTRDNYIRH 533 Query: 513 AK--------GHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR 564 G+ K D+ V S ++ GR Y + PSA Sbjct: 534 LPVESFRLQNRGGKGLKGVVTKEEDAPSKIVTCFSKDRLLIFTDMGRVYGLRAWETPSAS 593 Query: 565 --GQGEPLTGKLT-LPPGATVDHMLMES-------DDQKLLMASDAGYGFVCTFNDLVAR 614 G+G + LT + V +L S + L+ A+ G ++ V Sbjct: 594 RYGRGSHIRNLLTRIRDDEKVISILPMSRSLIENPEGHYLMFATANGRIKKSRLSEYVKI 653 Query: 615 NRAGKALITL--PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD------------- 659 NR GK + E ++ DA D ++ ++ G F + Sbjct: 654 NRNGKYALRFAGGEEDALVSVRPATDA-DHVVLVSSHGNACRFMPAQKKSRVDSNSGETI 712 Query: 660 ----LPQLSK-GKGNKIINIPSAEAARG 682 + + +G + + + G Sbjct: 713 TTHVVRVQGRVSQGVSGMKLRKGDQVIG 740 Score = 63.4 bits (153), Expect = 4e-08, Method: Composition-based stats. Identities = 40/281 (14%), Positives = 86/281 (30%), Gaps = 66/281 (23%) Query: 478 SPLQEREEAKAM--SEHDMLPSEPVTIVL--SQMGWVRSAKGHDIDAPGLNYK------- 526 + +++ E+ ++ ++ + ++ + G ++ ++ + N K Sbjct: 606 TRIRDDEKVISILPMSRSLIENPEGHYLMFATANGRIKKSRLSEYVKINRNGKYALRFAG 665 Query: 527 -AGDSFKAAVKGKSNQPVVFVD-------------------STGRSYAIDPITLPSARGQ 566 D+ + VV V ++G + + + Q Sbjct: 666 GEEDALVSVRPATDADHVVLVSSHGNACRFMPAQKKSRVDSNSGETITTHVVRVQGRVSQ 725 Query: 567 GEPLTGKLTLPPGATVDHMLMESD-DQKLLMASDAGYGFVCTF----------------- 608 G + L G V M++ D D +L S G Sbjct: 726 G---VSGMKLRKGDQVIGMIVTDDFDTSVLTISRYGMAKRSRLGSGEMKPVLDDDSMPVL 782 Query: 609 ----------NDLVARNRA--GKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFP 656 + NR G ++L + H++ + D D L +T G M+ Sbjct: 783 DEDGGLVQQRDGYRRTNRGTRGVRTMSLRDGDHIVSVRQVPDLDDQLFMLTGTGMMIRMV 842 Query: 657 VSDLPQ-LSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQ 695 + L K KG +I+ + +A+ D + + LP Sbjct: 843 SGQTKETLGKVTKGTRIMELRNADRTGYVDEIIFVARLPAD 883 >UniRef50_C8NZH8 DNA topoisomerase IV, A subunit n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZH8_ERYRH Length = 822 Score = 688 bits (1777), Expect = 0.0, Method: Composition-based stats. Identities = 226/706 (32%), Positives = 376/706 (53%), Gaps = 26/706 (3%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 D +L + + + YS Y+I +RALP + DGLKPVQRRI+YAM ++K Sbjct: 4 DSLIKLPIEDIVGERFGRYSKYIIQERALPDVRDGLKPVQRRILYAMFHDKNFYDKPYRK 63 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SA+TVG V+G YHPHGDS+ YEAMV M+Q + PL+D QGN G+ DD AAMRYTE Sbjct: 64 SAKTVGLVIGNYHPHGDSSVYEAMVRMSQSWKMNMPLIDMQGNNGSIDDDP-AAAMRYTE 122 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +R+SK S+ LL + + +V NFD EP +LPAR PN+L+NG+TGIA G AT+IPP Sbjct: 123 ARISKLSQKLLENIDEEVVPFVLNFDDMTTEPSVLPARYPNLLVNGSTGIAAGYATNIPP 182 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 NL E+ A+I + P ++++++ +VQGPD+PT A II + I I G+G + +R Sbjct: 183 FNLNEIMDASIYRLHNPNCSVEEIMTMVQGPDFPTGA-IIQGQEGIEDIIRKGKGRIVVR 241 Query: 243 AVWKKEDG----AVVISALPHQVSGARVLEQIAAQMRNKKLPM---VDDLRDESDHENPT 295 A + + +VI+ LP++V + V+ +I K V D+RDESD Sbjct: 242 AKAEIVENKSMKQIVITELPYEVIKSNVVRKIDELRFTKASEGFGDVMDVRDESDRTG-L 300 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 R+VI + + +++ ++N + T+L+ Y N+ I +D RP V LLE+L +L FR+ Sbjct: 301 RIVIDCKRD-ANVESILNLFYKYTELQVYYNANMVAI-VDQRPKVCGLLEVLDAYLKFRQ 358 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEII---RNEDEPKPALMSRFGLTET 412 + V R YR E+ KRLHILEGL+ A N+DE+I +I N E + +M+ FG TE Sbjct: 359 EVVLNRSKYRYEQKEKRLHILEGLMKATSNLDEIIAVIRSSNNRSESRNNIMAEFGFTEA 418 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QA AI++L+L L+ + +R E ++L E + L ++ + +NN++ KE +A+ Sbjct: 419 QATAIVDLQLYRLSSTDINALRDEFAKLANELEYLDLVINNIDMLNNMIVKEFMEIKEAF 478 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG---LNYKAGD 529 RRS ++ + ++ +E V + +S+ G+++ + + D Sbjct: 479 DTPRRSVIEAEISELEVDHLSLITNEAVMVTVSRDGYLKKVSLRSYGSSQKDVIALMDED 538 Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLM 587 + + ++ +VFV S GR I + AR + G + + P + + Sbjct: 539 MPVFSSEVETTDYLVFVTSRGRYGMILVHEIDEARWRDTGSHINQYMKCDPNEKIISVFT 598 Query: 588 ESD---DQKLLMASDAGYGFVCTFNDL-VARNRAGKALITLPENAHVMPPVVIEDASDML 643 + ++ ++ +G ++L V R ++ L ++ ++ V I + L Sbjct: 599 LKSFDTYRFIVTSTASGMIKKTAISELEVKRTNRLYDVMKLGKHDELVGAV-ITSNDEHL 657 Query: 644 LAITQAGRMLMFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQ 688 L +++ G+ + ++++ + + KG + + + GL+ Sbjct: 658 LLVSKEGQCMRLDLAEINPIGLRAKGVIGMKLKLNDRVVSTMGLSD 703 >UniRef50_Q2SS33 DNA topoisomerase IV, A subunit n=5 Tax=Mollicutes RepID=Q2SS33_MYCCT Length = 899 Score = 688 bits (1775), Expect = 0.0, Method: Composition-based stats. Identities = 229/757 (30%), Positives = 405/757 (53%), Gaps = 31/757 (4%) Query: 1 MSDMAERL--ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASA 58 MSD +E + L E N + Y+ Y+I +RALP + DGLKPVQRRI+YAM++L L Sbjct: 1 MSDKSEIILYPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDK 60 Query: 59 KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 118 +KKSAR VG+V+GKYHPHGDS+ Y+AMV M+Q + PLVD QGN G+ D S AAM Sbjct: 61 PYKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDG-DSAAAM 119 Query: 119 RYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMAT 178 RYTE+RL+K S LLL +L + T + PNFD + EP +LP+ PNIL+NG TGIA G AT Sbjct: 120 RYTEARLTKISNLLLEDLEKDTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYAT 179 Query: 179 DIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGS 238 ++PPHNL E+ A I +I P T+DQ+L IV+GPD+PT A II ++ IR+ + G+G Sbjct: 180 NMPPHNLSEIIDATIDIIKNPNITIDQILKIVKGPDFPTGA-IIQNKQGIREAFLTGKGK 238 Query: 239 VRMRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 V + + W +E +VI +P++V ++++I + N + ++RDE+D + ++ Sbjct: 239 VIISSKWHQEKNNIVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRIVI 298 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + + + +++ V LF +T L SY N N+I +D +P L++I+ ++ ++ Sbjct: 299 EL--NEKANLETVRKFLFKSTWLSVSYNYN-NIIIVDKQPKQLGLIDIIKAYISHYKEVF 355 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQAE 415 +R + L K RL I++GL+ A +DEVI++IR + + L+ F T Q+ Sbjct: 356 IKRTEFNLNKTNLRLEIVKGLIKALSILDEVIKVIRKSENRIDAINNLVISFNFTTNQST 415 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 AI++++L L + K+ E++EL + + Q IL ++N + L+ + +G Sbjct: 416 AIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEILNDNLVLDNEIISRLEEVKKQFGIK 475 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNY---KAGDSFK 532 R+S +++ E + + +++ + + + +S+ G+++ + ++ L+ K D + Sbjct: 476 RKSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSSFGKKPNDMWI 535 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLMESD 590 + + ++ + Y+I + +++ + G + T P T+ + L+ + Sbjct: 536 SQGVCSNLDHLILISDQANYYSIPLYKISTSKWKEQGVHINSVATTQPNETIINALVIKE 595 Query: 591 ----DQKLLMASDAGYGFVCTFNDLVAR--NRAGKALITLPENAHVMPPVVIEDASDMLL 644 Q LL+ + G +DL + N++ K + + ++ ++ +I + Sbjct: 596 FINSTQHLLLVTKNGLIKRTQISDLETKIFNKSFKI-MKISDDDSLVYADLISSKTSYCC 654 Query: 645 AITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVG 703 +T+ G + + + D+P S KG K N+ +D + L + I Sbjct: 655 IVTKNGYAVRYNIEDIPIQSTISKGVKAANLK-------DDQIISALSLQTNKDIIIFTN 707 Query: 704 KRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEID 740 K K + L + R ++G + ++ ++ E+ Sbjct: 708 KNNYKKIDQNLIPIY-IRPKKGIRILVEKKKNKEEVI 743 >UniRef50_C1N3Z1 Predicted protein n=2 Tax=cellular organisms RepID=C1N3Z1_9CHLO Length = 1082 Score = 683 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 249/799 (31%), Positives = 373/799 (46%), Gaps = 103/799 (12%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 ++ L +YL Y+M VI+ RALP + DGLKPV RRI+YAM ELGL++ FK Sbjct: 59 NERIIDTELSVEASQSYLAYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDSKKPFK 118 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K AR VG+VLGK+HPHGD + Y+A+V MAQ FS LVDG GN+G+ D AAMRYT Sbjct: 119 KCARVVGEVLGKFHPHGDQSVYDALVRMAQDFSMSAQLVDGHGNFGSLDADPP-AAMRYT 177 Query: 122 ESRLSKYSE-LLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 E RL +E +LL+++ D+ FDG+ EP +LPARLPNIL+NG+TGIAVGMAT I Sbjct: 178 ECRLRSVAEAMLLADIDADAVDFTETFDGSQNEPSVLPARLPNILINGSTGIAVGMATSI 237 Query: 181 PPHNLREVAQAAIALIDQPK-TTLDQLLDIVQGPDYPTEAEIITSRAE--IRKIYENGRG 237 PPHNLREVA A P TLD LL ++ PD+PT I+ + R +Y G+G Sbjct: 238 PPHNLREVADALAVYAADPDGCTLDDLLKVMPAPDFPTSGIIMAPKEGKGFRDMYATGKG 297 Query: 238 SVRMRAVWKKED-------------GAVVISALPHQ-----------------VSGARVL 267 SV +R E+ AV+I+++P+Q + A + Sbjct: 298 SVTLRGAAHIEEIKTSVRGKNATTKNAVIITSIPYQARSIHWSPYDRVGVVNATNKASLC 357 Query: 268 EQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRI 327 QIA + +++L V D+RDESD + +V + RS D + V L+ T L+ + Sbjct: 358 GQIADLVNSRQLDGVVDVRDESDRDGMRVVVEIRRSG--DPNFVREQLYTRTRLQVRVSV 415 Query: 328 NLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNID 387 NL + + P V L++I+ E+L FR +++ RR + L K RLH++EG L D Sbjct: 416 NL-VGLIGREPKVLTLMDIMREFLEFRCESIERRARHELSKASSRLHVVEGYLAVQAAPD 474 Query: 388 EVIEIIRNEDE---PKPALMSR-FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKE 443 V+ IR + + L F L++ Q+EA+L + LR L LE K+R E+++L + Sbjct: 475 AVVAAIRAAKDGPEAQKTLQEAPFSLSKEQSEAVLAMPLRRLTGLEHDKLRAEEADLTAK 534 Query: 444 RDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQER-------------------- 483 +QL +L+ + + E + YG +R++ + Sbjct: 535 VEQLNALLSDRALVIAAVASEAKELRDKYGVERKTLIDHSAAKLAAEVAEARRRSPPSGD 594 Query: 484 --EEAKAMSEHDM-----------LP----SEPVTIVLSQMGWVRSAKGHDIDAPGLNY- 525 E+ ++E +M +P IV++ G+++ Sbjct: 595 GGEDVGNVAEREMAAAALYAKRMNIPLDSLDADNLIVMTGKGYIKRIDPKIFSRQNKGTI 654 Query: 526 -------KAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTL 576 + GD V+F GR YA+ +P S G P T L L Sbjct: 655 GKKGGRMRGGDQVTKVTHCNGLDTVLFFTDRGRVYAVRAYDIPQSSTTALGTPFTRVLKL 714 Query: 577 PPGATVDHMLMES--------DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENA 628 G T+ ML + L+M + G ++ NRAGK + L + Sbjct: 715 AEGETITAMLPVDTASRRGSNVGEHLVMLTARGVVKKTPISEFANINRAGKRALGLQKGD 774 Query: 629 HVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLA 687 + ++ D D ++ G +L F + + S+ G G K + A A E Sbjct: 775 RLKHVELVRDG-DGIMVAGVDGMVLHFSMDSIRAQSRIGSGVKAMKFREASAGATEKKPK 833 Query: 688 QLYVLPPQSTLTIHVGKRK 706 + PP + + R Sbjct: 834 K----PPAAHMLFAADARA 848 Score = 55.7 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 16/109 (14%) Query: 594 LLMASDAGYGFVCTFNDLVARNRAGK--ALITLPENAHV-------MPPVVIEDAS---- 640 +L+ + G G + + R G I L E + + + P + E Sbjct: 967 VLLVTSEGQGKRISVGQFRQKGRGGLGNKAIGLEEGSRLAAMCITGVDPALREAGDAECV 1026 Query: 641 -DMLLAITQAGRMLMFPVSDL-PQLSK-GKGNKIINIPSAEAARGEDGL 686 + ++ + AG + + V++L PQL + KG K++ + + R L Sbjct: 1027 AEEVIIGSTAGVLNRYDVTELRPQLGRNAKGVKLMKLNDGDTVRDITLL 1075 >UniRef50_A9KS51 DNA topoisomerase (ATP-hydrolyzing) n=4 Tax=Firmicutes RepID=A9KS51_CLOPH Length = 748 Score = 683 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 243/759 (32%), Positives = 397/759 (52%), Gaps = 58/759 (7%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 +L E + ++ NY+M VIM RA+P + DGLKPVQRRI+Y+M ELGL+ +KSAR Sbjct: 10 QLDFSEEMKTSFRNYAMSVIMARAIPDVRDGLKPVQRRILYSMIELGLDPKKPHRKSARI 69 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VGD +GKYHPHGDS+ Y+A+V M +P+S + PLVDG GN+G+ D AAMRYTE+RLS Sbjct: 70 VGDTMGKYHPHGDSSIYDALVHMTEPYSMQIPLVDGHGNFGSIDGDG-AAAMRYTEARLS 128 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 + LL L +G ++VPNFD + +EP +LPA LPN+L+NGTTGIAVGMAT++PPHN Sbjct: 129 DGAMTLLDHLDKGLVEFVPNFDESEKEPSVLPAMLPNLLINGTTGIAVGMATNMPPHNPS 188 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 EV + IA ID P T + L+ + GPD+PT II S +IR IYE G G +++RA + Sbjct: 189 EVIEGVIAYIDNPDITTEGLMKYIPGPDFPTGGTIINSE-DIRNIYETGEGRLKVRAKTE 247 Query: 247 KE-----DGAVVISALPHQV--SGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 E +VI+ +P+ V + +++E + M++K + D+RDES E ++ Sbjct: 248 IEASDNGRKNIVITEIPYTVAGNKTKLVESLVDLMKDKVFDEIFDVRDESSKEGIRVVIE 307 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 V + D++ ++N L+ T +E +Y +NL + D +P V L ++ E++ F+ + Sbjct: 308 VKKDR--DIENLLNGLYKKTSMEDTYGVNLLAVK-DQQPIVFKLKNLVGEFVSFQEELYT 364 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402 + + L+K KRL I++GL+ A ID +IEI+R K A Sbjct: 365 KEYEHLLDKANKRLEIVDGLIRATDVIDLIIEILRGSSSIKQAKDCLIHGNTTEINFKTE 424 Query: 403 ----LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMN 458 ++ TE QA+AIL + L L LE +++ E L +Q Q IL +++++ Sbjct: 425 ASRKKAAKLDFTERQADAILAMPLSKLIGLEILRLHEENQSLLDSIEQYQSILGNKKELF 484 Query: 459 NLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI 518 ++K L+ + + R + L E A+ + E + E + I++ + G+ +S I Sbjct: 485 KVIKSNLKEYKKQFNVPRHTVLANMEIAEYVEE---VKVEDIYILIDKFGYTKSVDNTSI 541 Query: 519 -DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLT 575 N K F VK K+ + + G Y + +P + +G + Sbjct: 542 SRVSEDNLKD---FVHIVKMKNTDRLCLFTAQGNMYQVKAEKIPKCKIKDKGTLIHNLCK 598 Query: 576 LPPGATVDHMLMES-DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPV 634 + + ++ E + +LL + G+ + + + NRA + L E HV+ + Sbjct: 599 VDKEEILLYIAFEDLFESQLLFTTKNGFIKLVSGIEFET-NRAMISATKLEEADHVVSVL 657 Query: 635 V-----IEDASDMLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGLAQ 688 I + ++ +T+ L FP++++ +L K KG K I + +D +A Sbjct: 658 CLSAHTISNPDSKVILLTEDSLSLGFPLTEVSELKKTSKGVKGITLEK------KDKVAF 711 Query: 689 LYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTL 727 V P++ + GK + + +G++ +L Sbjct: 712 ATVALPETEFFEYQGKELSAKKVRN--RKRAAKGQKASL 748 >UniRef50_D1BTH4 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Actinomycetales RepID=D1BTH4_XYLCX Length = 855 Score = 682 bits (1761), Expect = 0.0, Method: Composition-based stats. Identities = 262/789 (33%), Positives = 405/789 (51%), Gaps = 79/789 (10%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 + + E+++L Y+ VI RALP DGLKPVQRRI+Y M+++GL + KS+R + Sbjct: 20 IDVASEMESSFLEYAYSVIYARALPDARDGLKPVQRRILYMMADMGLRPDRPYVKSSRVI 79 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 G+V+GK HPHGD A Y+A+V +AQ FS R PLVDG GN+G+ DD AA RYTE+RL+ Sbjct: 80 GEVMGKLHPHGDQAIYDALVRLAQDFSLRLPLVDGHGNFGSLDDGP--AAPRYTEARLAP 137 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 S + + L + D+VPN+D L +P++LP+ +PN+L+NG +GIAVGMAT++ PHNL E Sbjct: 138 PSTAMTAGLDEDVVDFVPNYDNKLTQPEVLPSAIPNLLVNGASGIAVGMATNMAPHNLVE 197 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 V A L+ P TL+ ++ V GPD PT +I+ IR Y +GRG+ R RA + Sbjct: 198 VVAAGQHLLANPAATLEDVMRFVPGPDLPTGGKIV-GLDGIRDAYRSGRGTFRTRATARI 256 Query: 248 ED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 E+ + I+ LP+ V +V+E+IA ++ KK+ V +++D +D + RLV+ + Sbjct: 257 ENITPRRRGITITELPYLVGPEKVVEKIADGVKAKKIQGVANVQDLTDRTHGMRLVVEVK 316 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRL 362 + D + V+ L+ TT LE S+ IN N+ + G+P LLE+L W+ R + VRRR Sbjct: 317 TG-FDPEAVLEQLYRTTPLEDSFGIN-NVALVGGQPRTLGLLELLRVWVEHRIEVVRRRT 374 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP---KPALMSRFGLTETQAEAILE 419 YRL K +RLH++EGLL+A ++IDEVI++IR+ D+ + LM F L+E QA IL+ Sbjct: 375 AYRLGKRKERLHLVEGLLLAIVDIDEVIQVIRSSDDAGIARARLMDVFDLSEPQATYILD 434 Query: 420 LKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSP 479 L+LR L K +++ EQSELEKE L+ IL S+ + ++ E+ A YG RR+ Sbjct: 435 LQLRRLTKFSRIELEKEQSELEKEIAALEEILGSDAVLRRVVSTEMGDVAATYGTPRRTV 494 Query: 480 LQEREEAKAMSEHDM---------------LPSEPVTIVLSQMGWVRSA----------- 513 L + S + P ++LS G + Sbjct: 495 LLDSAGGATTSAAAAPGGARGRKPAEISLEIADAPTHVLLSATGLLARTAVAPAAAPTAS 554 Query: 514 KGHDIDAPGL------------------NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAI 555 +G +D G+ A D+ + V S + V + GR + Sbjct: 555 EGDQLDLDGVALGAPGAPGASGAVSRHGRRHAHDALRGDVMTTSRSDIGLVTTAGRMLRV 614 Query: 556 DPITLPS--------ARGQGEPLTGKLTLPPGATVDHMLMESDDQ-KLLMASDAGYGFVC 606 + LPS + G P++ + L PG ++ +DD L + + G Sbjct: 615 SALELPSIPPTDGAPSLSGGIPVSELVELAPGEEALAVVSLADDAPTLALGTAGGVVKRV 674 Query: 607 TFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDL-PQLSK 665 +D V N+ +I L + V+ D ++ I+ +L + S + PQ Sbjct: 675 AASD-VPSNKDEWTVIGLKDGDSVVGAAP-AGDDDEVVFISSDSSLLHYAASAVRPQGRA 732 Query: 666 GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI--------HVGKRKIKLRPEELQKV 717 G G I++ + + G+A+ V P + +T+ VG +K+ P EL Sbjct: 733 GGGIAGISLAAGQTVVFF-GVARAAVRPELTVVTVGGSAGQLPGVGGGSVKVTPYELYPG 791 Query: 718 TGERGRRGT 726 G R G Sbjct: 792 KG-RATGGV 799 >UniRef50_Q04F36 DNA topoisomerase IV subunit A n=1 Tax=Oenococcus oeni PSU-1 RepID=Q04F36_OENOB Length = 811 Score = 682 bits (1760), Expect = 0.0, Method: Composition-based stats. Identities = 221/738 (29%), Positives = 375/738 (50%), Gaps = 35/738 (4%) Query: 1 MSD--MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASA 58 M+D + L+L + + YS Y+I +RALP I DGLKPVQRRI++AM+E G Sbjct: 1 MTDESRIQELSLEDVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYQH 60 Query: 59 KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 118 ++KSA+ VG+V+G YHPHGDS+ Y+A+V M+Q + R PL+D GN G+ D+ AAM Sbjct: 61 AYRKSAKAVGNVMGNYHPHGDSSIYDALVRMSQNWKMREPLIDMNGNNGSIDNDPP-AAM 119 Query: 119 RYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMAT 178 RYTE+RLS + +L++L Q D V NFD T EP +LP+R+PN+L+NG +GI+ G AT Sbjct: 120 RYTEARLSMIAGDMLTDLDQQAVDMVLNFDDTRYEPTVLPSRIPNLLVNGASGISAGYAT 179 Query: 179 DIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGS 238 +IPPHNL EV A I L+ P +L+ L+ V GPD+PT II I+ Y GRG Sbjct: 180 EIPPHNLGEVINALIYLLSHPAASLEDLMKYVSGPDFPTGG-IIQGLDGIKNAYTTGRGK 238 Query: 239 VRMRAVWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHEN 293 V +RA + + + I+ LP++V+ + ++ +I NK + + ++RD++ E Sbjct: 239 VYLRAKTEIKQLRAGKKQIEITELPYEVNKSELVARIDEIRLNKDVNGITEVRDDTSREG 298 Query: 294 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVF 353 + + + + + ++++LF TDL+ +Y N+ I RP L + LS +L F Sbjct: 299 LLIAIELSK--DANAEGILDYLFKKTDLQIAYNFNMTAIN-KQRPVSVGLKQALSAFLDF 355 Query: 354 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLT 410 R++ +RRR + L+K R I+EGL+ +DEV+ IR + K L+ +F + Sbjct: 356 RKEVIRRRTEFELKKAQARQEIVEGLIKMLSILDEVVATIRGSESRKNAKENLIKKFQFS 415 Query: 411 ETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQ 470 + QAEAI+ L+L L + + ++ E L K+ + IL +++N +L+ EL+ + Sbjct: 416 DPQAEAIVTLQLYRLTNTDVVALQNEHDRLTKQISEFNSILKETKELNKVLRNELKEIEK 475 Query: 471 AYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDS 530 Y + RRS +Q + M+ +E V + +++ G+ + A A N D Sbjct: 476 KYSNPRRSQIQTEVSQLKIDTAVMIANEDVIVQITKNGYAKRASFRSYKATDDNGLTDDD 535 Query: 531 F-KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLT-LPPGATVDHML 586 + K + + + G L + + GE L+ +++ L V + Sbjct: 536 YPVYLAKVNTLSSLFIFTNKGNLIYRQVYELADTKWKDVGEHLSQEISGLAEDEIVIKVF 595 Query: 587 MESDDQK---LLMASDAGYGFVCTFNDL----VARNRAGKALITLPENAHVMPPVVIEDA 639 D ++ + S + N L + RA K I + ++ Sbjct: 596 DFKDLKQTGTFVFTSSDAFVKQVDKNALNPTKYYKKRASK-AIAIKGKNVLVSVAFAASQ 654 Query: 640 SDMLLAITQAGRMLMFPVSDLPQL-SKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTL 698 + +++ TQ G + FP+ ++ + +K G K I +D + + ++ + + Sbjct: 655 NHLVVMATQKGYLYKFPIGEIALMTAKSSGAKPAKISK------KDRIVSMDLIDSEDLM 708 Query: 699 TIHVGKRKIK-LRPEELQ 715 + + K + P E+ Sbjct: 709 VLMSDRGHSKIINPLEIP 726 >UniRef50_A8UVW0 DNA gyrase A subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UVW0_9AQUI Length = 781 Score = 670 bits (1729), Expect = 0.0, Method: Composition-based stats. Identities = 248/735 (33%), Positives = 404/735 (54%), Gaps = 44/735 (5%) Query: 14 TENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGK 73 + +Y++Y+M VI+ RA+P + DGLKPVQRRI+YAM E+GL FKKSAR VG+VLGK Sbjct: 12 VKQSYIDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEMGLMPEKPFKKSARVVGEVLGK 71 Query: 74 YHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLL 133 +HPHGD A Y+A+V MAQ FS RYPL+ GQGN+G+ D A MRYTE++LSK + LL Sbjct: 72 FHPHGDQAVYDALVRMAQDFSMRYPLIIGQGNYGSVDGDPP-AQMRYTEAKLSKVAVELL 130 Query: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193 ++ + T D++PNFD +L EP +LP++ PN+L NGT GIAVG+AT IPPHNLREV +A + Sbjct: 131 EDIDKDTVDFIPNFDESLMEPAVLPSKFPNLLCNGTAGIAVGLATSIPPHNLREVGKALV 190 Query: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE----- 248 L P + +++L+IV+GPD+PT +I + +I++IYE GRG V+++A E Sbjct: 191 ELAKNPNMSTEEILEIVKGPDFPTGG-VIENYKDIKEIYETGRGIVQVKAKAHVEKVQGG 249 Query: 249 DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308 +++S +P+QV+ A ++++IA +R+ +L + D+RDESD + R+VI + Sbjct: 250 REQIIVSEIPYQVNKAELIKKIADNVRSGRLKEISDIRDESDKDG-IRIVIELKR-EAKG 307 Query: 309 DQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEK 368 ++V+ LF T L K + +NL ++ ++G P + + E+L E++ R + RR + L+K Sbjct: 308 EKVLKKLFKYTQLRKGFPVNL-VVLINGEPKLVGIKELLREFIKHRLSIILRRTRFFLKK 366 Query: 369 VLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAEAILELKLRHL 425 RLH+++GLL+A N+DEVIE IR + + L +RFGLTE QA+A+L+L+L L Sbjct: 367 AEDRLHVVQGLLIALNNLDEVIEGIRRSKDVQEAREMLQARFGLTERQAQAVLDLRLHRL 426 Query: 426 AKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREE 485 LE K+R E+++L ++ + + ++ SE + + +E + + +GD RR+ ++ EE Sbjct: 427 TSLERDKLRQEEADLLQKIEYYRKVVGSEEERIKIFVEETENLVKKFGDPRRTFIEGIEE 486 Query: 486 AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVF 545 + + + + G V + + + + Sbjct: 487 KIEEG--------SLVVAVLENGKVMPVENMPEGES--------PVVDILDVPFTEGLFL 530 Query: 546 VDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFV 605 V + GR Y + S QG + V + E +LL+A+ G Sbjct: 531 VSNRGRVYWLAG----SQALQGSKVN--FKESEEYIVGAFIRERFADRLLLATRNGMIKK 584 Query: 606 CTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLP-QLS 664 + + + G +I L E+ V+ D SD+L+ T+ G++ F + ++P Sbjct: 585 IPLVEFEYKAQ-GMRIIKLAEDDEVVGIAQSIDMSDILM-FTRRGKVARFSIREIPAATP 642 Query: 665 KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRR 724 KG + I + + G + Q + + K+K ++ V RG + Sbjct: 643 GTKGAQGIKVEDNDEVAGARVIR-----EDQPYIIVVTVDGKVKRIYQQEIGVR-NRGVK 696 Query: 725 GTLMRGLQRIDRVEI 739 G + G R V++ Sbjct: 697 GVNVLGSARERLVDL 711 Score = 61.1 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 60/181 (33%), Gaps = 11/181 (6%) Query: 499 PVTIVLSQMGWVRSAKGHDIDAPGLNYK-----AGDSFKAAVKGKSNQPVVFVDSTGRSY 553 ++ ++ G ++ + + + D + ++ G+ Sbjct: 571 DRLLLATRNGMIKKIPLVEFEYKAQGMRIIKLAEDDEVVGIAQSIDMSDILMFTRRGKVA 630 Query: 554 AIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQ-KLLMASDAGYGFVCTFNDLV 612 +P+A G + + V + +DQ +++ + G ++ Sbjct: 631 RFSIREIPAATP-GTKGAQGIKVEDNDEVAGARVIREDQPYIIVVTVDGKVKRIYQQEIG 689 Query: 613 ARNRAGKALITLPEN-AHVMPPVVIEDASDMLLAITQAGRML--MFPVSDLPQLSKGKGN 669 RNR K + L ++ + I+D + LL T+ GR D+P + + Sbjct: 690 VRNRGVKGVNVLGSARERLVDLLPIKDELE-LLITTKLGRAFYDRIRAEDIPLSKRDRLA 748 Query: 670 K 670 K Sbjct: 749 K 749 >UniRef50_D1C5K4 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5K4_SPHTD Length = 813 Score = 666 bits (1719), Expect = 0.0, Method: Composition-based stats. Identities = 241/761 (31%), Positives = 389/761 (51%), Gaps = 37/761 (4%) Query: 2 SDMAERLALHEF---TENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASA 58 + E + EF E+A++ Y++ V+ RALP DGLKPVQRRI++ M E G ++ Sbjct: 8 NGHEETIETEEFSTLFEDAFVQYALAVVTSRALPDARDGLKPVQRRILWCMYENGHRSNR 67 Query: 59 KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 118 KSA VGDVL YHPHGDSA Y+A V MAQ F+ RYPL++GQGN+G+ D + AA Sbjct: 68 PTVKSASVVGDVLKSYHPHGDSAVYDAAVRMAQDFTMRYPLIEGQGNFGSIDG-DAAAAY 126 Query: 119 RYTESRLSKYSELLLSELGQGTADWVPNFDG--TLQEPKMLPARLPNILLNGTTGIAVGM 176 RYTE RLS ELLL ++ Q T + + + +P LPAR+P I N ++GIAVG+ Sbjct: 127 RYTEMRLSPIGELLLRDIEQETVPFEQTYLQMPNVVQPVYLPARIPPI-CNPSSGIAVGL 185 Query: 177 ATDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR 236 +TDIPPHNLRE +AAIAL+D P+ T+D+L+ I+ GPD+PT II IR E+G+ Sbjct: 186 STDIPPHNLREAIRAAIALLDNPEMTVDELMKILPGPDFPTGGRII-GTDGIRAYLESGK 244 Query: 237 GSVRMRAVWKKED----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHE 292 G + +R + E+ +V++ +P +S +R++ I + + K+ V D+R+ESD E Sbjct: 245 GRLVIRGEVRLEEELRQRNLVVTEIPP-ISRSRLVRSIINAVNDGKVTGVTDVRNESDDE 303 Query: 293 NPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDG-----RPAVKNLLEIL 347 TR+V+ + V+N L+ TDL+ + +N+ + D +P +L++L Sbjct: 304 KGTRIVVEL-ERSATPEVVLNQLYRFTDLQTAVNVNMVFLFGDPGQPARQPRRTGMLDLL 362 Query: 348 SEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALM 404 W + D + RR Y+L K +RLH++EGL++ + DE++ I + + K + Sbjct: 363 RYWNRHQIDVITRRAEYQLRKAQERLHVVEGLIIGAAHADEIVRIFQKARDRNVAKEKIK 422 Query: 405 SRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKE 464 ++ LT+ QA+ I + L + +L+ K E+ EL K +LQ +LASE K LLK+E Sbjct: 423 VKYNLTDIQADVIANMTLAQVTRLDAAKYAEEKKELTKRIKELQALLASEAKKVALLKEE 482 Query: 465 LQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI-DAPGL 523 L A AQ +GDDRR+ + + + S ++ P+ IV SQ G V++ + A Sbjct: 483 LTAIAQEHGDDRRTRIDREGQEEIASVASLIEERPILIVASQSGRVKALPENAFKRARAG 542 Query: 524 NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGA- 580 G+ A V + ++ + GR Y +P+ GEP L P Sbjct: 543 RTARGEGLAAIVPASTLDYLLVLTRGGRVYLSRGHEVPAGTRASSGEPAQKVFGLKPDEA 602 Query: 581 --TVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIED 638 T+ + ++D+ ++ + G + + AG + L + V+ + E Sbjct: 603 LATILPVNELTEDRYVVWFTANGKVKKTSLAEYRTITSAGLNDLRLLGDDRVVAATLSES 662 Query: 639 ASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLP-PQS 696 + L+ + G+ L F ++ + G+G I + + G + + L + P Sbjct: 663 GGEYLVIAS-NGQALRFADDEVRATGRDGQGVNAIALKA-----GAEVVTALAIPPKSDG 716 Query: 697 TLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRV 737 + + + K + R G L + DR+ Sbjct: 717 DVLVVTAQGMGKRTALKDFPAR-RRATAGVAAITLAKGDRI 756 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 76/214 (35%), Gaps = 13/214 (6%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDA------PGLNYKAGDSFKA 533 L+ E + + L + + + G V+ + L D A Sbjct: 597 LKPDEALATILPVNELTEDRYVVWFTANGKVKKTSLAEYRTITSAGLNDLRLLGDDRVVA 656 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESD--D 591 A +S + + S G++ + A G+ + L GA V L D Sbjct: 657 ATLSESGGEYLVIASNGQALRFADDEV-RATGRDGQGVNAIALKAGAEVVTALAIPPKSD 715 Query: 592 QKLLMASDAGYGFVCTFNDLVARNRA--GKALITLPENAHVMPPVVIEDASDMLLAITQA 649 +L+ + G G D AR RA G A ITL + + ++ D++L Sbjct: 716 GDVLVVTAQGMGKRTALKDFPARRRATAGVAAITLAKGDRIAGAALVTPDDDVVLGA-AG 774 Query: 650 GRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARG 682 G+ L V DL + + KG++++ + + Sbjct: 775 GQALQVTVKDLRRQGRATKGSRLLEVAKNDHVAT 808 >UniRef50_D0RNU6 DNA gyrase subunit A n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNU6_9RICK Length = 746 Score = 665 bits (1717), Expect = 0.0, Method: Composition-based stats. Identities = 240/749 (32%), Positives = 412/749 (55%), Gaps = 32/749 (4%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 MS + L YL Y++ I RALP + DGLKPV RR++YAM L L+ ++F Sbjct: 1 MSKNIVKDELQNQFAKKYLAYALSTITQRALPDVRDGLKPVHRRLIYAMYLLNLSPKSQF 60 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VGDV+GK+HPHGD + Y+A+V +AQ FS YPLV+GQGN+G D + AAMRY Sbjct: 61 KKSARVVGDVIGKFHPHGDQSVYDALVRLAQDFSTHYPLVNGQGNFGNVDG-DNAAAMRY 119 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE++L+K SE LL+++ + T ++ +DG L EP++LP++ PNIL NG++GIAVGMAT I Sbjct: 120 TETKLTKTSEYLLADIEEETVNFKKTYDGELDEPEILPSQFPNILANGSSGIAVGMATSI 179 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHN++E+ +A I L D P ++ LL ++GPD+PT + + EI K Y+ GRG Sbjct: 180 PPHNVQEICEALIYLNDNPNCSIKDLLKFIKGPDFPTGGILNEDKKEIFKAYKTGRGFFE 239 Query: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 +++ +K ED + ++ +P+ V+ ++++E++A + NKK ++D + DESD + Sbjct: 240 IKSKYKVEDLGRGLYQIAVTEIPYSVNKSKLIEKLAGIIINKKNKLLDHVSDESDEK--I 297 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 R+V+ P++ V+ + +MN LF ++L+ +N+N++ P V NL EIL L R Sbjct: 298 RIVLRPKNRNVNPEDLMNSLFEQSELKNKIFLNMNVLNEKNEPKVMNLKEILKSLLKHRY 357 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415 + ++N++L+K+ +RL IL+G ++ + N++++I+IIRN +PK L+ ++ T Q + Sbjct: 358 IILNNKINFKLKKIKRRLEILKGFIIVYKNLNQIIKIIRNSKDPKKELIKKYKFTLIQVD 417 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD- 474 +ILE++LR+L K+EE+ I+ E LE E+ +L IL S+ + E +GD Sbjct: 418 SILEMRLRNLKKIEELDIKKEFKNLELEKKRLSKILNSKTLQRKEINNEYTEVINEFGDN 477 Query: 475 ----DRRSPLQEREEAKAMSEHDMLPS-EPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529 RRS L++ + L E + + L +++S KG + K D Sbjct: 478 STYGPRRSILEKFVKFTDDELESKLEVIENINVSLINEKFLKSKKG----TYKRSEKNSD 533 Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589 + K++ + + + G+SY ++ L +G ++ L L + + + Sbjct: 534 DVSLIINCKTSDQICLLSNIGKSYILNCSNLKFGSTKGFLISSYLKLKDEEKIVDLFVYK 593 Query: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI--- 646 + Q+++++S GYGF DL ++GK + + +N +I D + + Sbjct: 594 EKQEIILSSQNGYGFFVKSEDLFTNKKSGKKIFNIKKNDQFYGSCLINKEKDKFIVLFLK 653 Query: 647 -TQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKR 705 ++++F + ++P L KG G + + L ++ S Sbjct: 654 DNLKYKLIIFELKEVPYLQKGSGVILFKTKGFKLNNFCSIDDNLSLIDIDSK-------- 705 Query: 706 KIKLRPEELQKVTGERGRRGTLMRGLQRI 734 K+ L+ +RG+ G +++ + I Sbjct: 706 --KIELGNLKSFLSKRGKSGKVIKLKKEI 732 >UniRef50_Q0SRA9 DNA gyrase/topoisomerase IV, A subunit family protein n=37 Tax=Clostridium RepID=Q0SRA9_CLOPS Length = 979 Score = 665 bits (1717), Expect = 0.0, Method: Composition-based stats. Identities = 235/708 (33%), Positives = 363/708 (51%), Gaps = 32/708 (4%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 R+ L E + YL Y++ V DRALP + DGLKPV RRI+Y L + KSAR Sbjct: 16 RMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYYKSARI 75 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VGD+LGKYHPHGDS+ Y+AMV++AQ FS R PL+DG GNWG+ D AAMRYTE+RLS Sbjct: 76 VGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDGDG-AAAMRYTEARLS 134 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 S +L ++ + D VPN+ + EPK+LPAR PN+L+NGT GIAVG++T+IPPHNLR Sbjct: 135 SISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIPPHNLR 194 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 EV +A ID + T +L++ ++GPD PT +I + YE G G V +RA K Sbjct: 195 EVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLI-GEKTLLSAYETGEGKVTLRAKAK 253 Query: 247 KE-----DGAVVISALPHQVSGARVLEQIAAQMRNKK----LPMVDDLRDESDHENPTRL 297 E +VI+ P++ + AR+L+ I+ +K+ L + D+RDESD + Sbjct: 254 IETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRTGIRAV 313 Query: 298 VIVPRSNRVD-MDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 + ++ D D+V+ +L+ TDL+ + N+ + DG+P L I+S ++ ++D Sbjct: 314 IEFKKAVDHDMADKVLKYLYKKTDLQGNISFNMVALA-DGKPETMGLKTIISHYVNHQKD 372 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQ 413 V RR LE KR HI+EG + A +DEVI IR + L+ +FG T+ Q Sbjct: 373 VVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENLVLKFGFTDLQ 432 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 AEAILEL L L LE + E EL K+ L+ IL +E + ++K EL+ A+ YG Sbjct: 433 AEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKDELKEVAEVYG 492 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAK-----GHDIDAPGLNYKAG 528 D+RR+ L E E + +++ +E V + LS G+++ ++D + Y+ G Sbjct: 493 DERRTALIEDESEAKIDLEELIVAEDVMVTLSNEGFIKKIPLKTYNRSNVDENEIEYREG 552 Query: 529 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARG--QGEPLTGKL---TLPPGATVD 583 D K +K + + G Y I ++ + +GE L + +L + Sbjct: 553 DYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVADKKWKDKGERLEDLIRGLSLEDEKIIA 612 Query: 584 --HMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASD 641 + ++ + G T + V I L + + +I+ + Sbjct: 613 LESIENFLPNKCFKFITANGLIKKTTLDKFVTAYSK-LMAIKLKNDDLLASVSLIDSQDE 671 Query: 642 M--LLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGL 686 + T G + +L + G +++ + S + + Sbjct: 672 ERFVEIETTNGLNFVVSEPELEFTDRNILGVQLVPLKSGNQIKSIRFV 719 Score = 68.4 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 24/227 (10%), Positives = 76/227 (33%), Gaps = 28/227 (12%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKS 539 L+ + K++ D + I +++ G +++ + ++ VK S Sbjct: 707 LKSGNQIKSIRFVDNYEYKEFIIGINKKGNIKTFSNMNSNSYEK-----------VKVNS 755 Query: 540 NQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLT-LPPGATVDHMLMESD------DQ 592 + ++ + G+ + L + ++ + + + ++ D Sbjct: 756 FRNIIAFSNKGKVFKFPAYLLQNTEE--SNISDLVDGFEKDELIIKVAPINEFGKIGEDL 813 Query: 593 KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRM 652 + S G + + + A ++ V I + ++ +T+ G Sbjct: 814 FVYFFSREGLVKKTSLREFLGEFNNQIAYKFKTPKDELVN-VDINFENATVILVTKNGMG 872 Query: 653 LMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTL 698 + F + + + + G I++ + ++ + V+PP + Sbjct: 873 IKFLATAINPMGRIASGVTGISL------KDDNKVIFGKVIPPSEGI 913 >UniRef50_B5IIX4 DNA gyrase/topoisomerase IV, A subunit domain protein n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IIX4_9CHRO Length = 834 Score = 665 bits (1715), Expect = 0.0, Method: Composition-based stats. Identities = 256/780 (32%), Positives = 398/780 (51%), Gaps = 66/780 (8%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + +ALH+ + +YL Y+M VI+ RALP DGLKPVQRRI++AM ELGL ++K Sbjct: 19 RIQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPYRKC 78 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VGDVLGKYHPHGD A Y+A+V + Q F+ R+PL+DG GN+G+ DD AAMRYTE+ Sbjct: 79 ARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVDDDPP-AAMRYTET 137 Query: 124 RLSKYSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 RL+ + LL E+G T D+ PNFDG+ QEP +LPA+LP +LLNG TGIAVGMAT+IPP Sbjct: 138 RLAPIAHEGLLDEIGNDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCTGIAVGMATNIPP 197 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HNL EV A IALI +P + ++L +V GPD+PT E++ S + +R Y GRGS+ MR Sbjct: 198 HNLGEVVDAMIALIRKPDLSDEKLFALVPGPDFPTGGEVLLS-SGVRDTYRLGRGSIPMR 256 Query: 243 AVWKKED----------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHE 292 V E+ AVVI+ LP+Q+S A +E++A Q+ + K+ + D+RDESD E Sbjct: 257 GVAHIEEVQPGKGRHRRSAVVITELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDESDRE 316 Query: 293 NPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLV 352 R+V+ R + + D V+ L T L+ ++ + + ++G+P +L +L E+L Sbjct: 317 G-MRVVVELRRD-ANADTVLAELQRRTALQSNFGA-ILLALVNGQPVQLSLRRLLQEFLD 373 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGL 409 +R T+ RR + L + RL ++EGL+ A + EVI +I + + +L R L Sbjct: 374 YRELTLIRRTRHALRRCEDRLEVVEGLIKALDALQEVIAMITAAADAASARASLQVRLDL 433 Query: 410 TETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADA 469 +E QA+A+L + LR L LE+ +R E EL ER +L+ +L + + E +A Sbjct: 434 SERQADAVLAMPLRRLTGLEQESLRQESEELRTERTRLRHLLDDRDSLLEAMVAEFRALK 493 Query: 470 QAYGDDRRSPLQE-----------------------REEAKAMSEHDMLPSEPVTIVLSQ 506 + YG RR+ L E EA A ++ ++ +++ Sbjct: 494 KRYGTPRRTRLVEGGDDLVAQRAAAARPNAELQRQQALEALASDSRVLIQADRAVKIVTP 553 Query: 507 MGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ 566 R A + + S V+ + GR + A Q Sbjct: 554 QVLGRLHLEEPAPLGEHPAPA----QLLLTVASQPQVLAFTTDGRV---AVLRWEFAGQQ 606 Query: 567 GEPLTGKLTLP-PGATVDHMLMESDDQK----LLMASDAGYGFVCTFNDLVARNRAGKAL 621 PL L GA+V +L + + + S G +DL + + Sbjct: 607 PGPLERFLPDSLEGASVMQVLPLQEGSDPHLSIGLLSSDGRFKRLPLDDLQDLSGRAATV 666 Query: 622 ITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD--LPQLSKGK-GNKIINIPSAE 678 + L E + V ++ L+ + GRML ++ +P + + G ++ + Sbjct: 667 LKLKEGVTLQRVVPCRSGAE-LVVASSTGRMLRLEANEEQVPLMGRTAQGPVLMRL---- 721 Query: 679 AARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTL-MRGLQRIDRV 737 ++ + +P ++ + + ++K E + ERG G + +R QR D + Sbjct: 722 --LPDEQIVGAACVPASGSVLLASRQGQVKKLAVESLR-RCERGDLGLIGIRFSQRGDAL 778 Score = 55.3 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 33/192 (17%), Positives = 56/192 (29%), Gaps = 16/192 (8%) Query: 503 VLSQMGWVRSAKGHDID------APGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID 556 +LS G + D+ A L K G + + V +S +V STGR ++ Sbjct: 641 LLSSDGRFKRLPLDDLQDLSGRAATVLKLKEGVTLQRVVPCRSGAELVVASSTGRMLRLE 700 Query: 557 PIT----LPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLV 612 L QG P+ + L P + +L+AS G L Sbjct: 701 ANEEQVPLMGRTAQG-PV--LMRLLPDEQIVGAACVPASGSVLLASRQGQVKKLAVESLR 757 Query: 613 ARNRA--GKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNK 670 R G I + + + ++ + R L Sbjct: 758 RCERGDLGLIGIRFSQRGDALVA-LSSGEHPLVAVLAGENRSARLSSGSLALEDANGSGL 816 Query: 671 IINIPSAEAARG 682 + + E+ R Sbjct: 817 TLELRPGESLRD 828 >UniRef50_Q98QI8 TOPOISOMERASE IV SUBUNIT A n=1 Tax=Mycoplasma pulmonis RepID=Q98QI8_MYCPU Length = 939 Score = 656 bits (1693), Expect = 0.0, Method: Composition-based stats. Identities = 212/745 (28%), Positives = 370/745 (49%), Gaps = 33/745 (4%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 +++ +L + + + YS Y+I RALP DGLKPVQRRI+Y+M +L L F Sbjct: 12 INEKLISQSLDQIMSDRFGRYSKYIIQQRALPDARDGLKPVQRRILYSMMDLKLWNDKPF 71 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VGDV+GKYHPHGDS+ YEAMV MAQ + PL+ GN G+ DD AAMRY Sbjct: 72 KKSARIVGDVIGKYHPHGDSSIYEAMVRMAQDWKMNIPLIQMHGNIGSIDDDP-AAAMRY 130 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TESRL++ S L+L + + + PNFD + +EP +LPA +PN+LLNG GIA G AT++ Sbjct: 131 TESRLAEISNLMLEGIEKNVVSFAPNFDDSEKEPTVLPALIPNLLLNGARGIAAGFATEM 190 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL E+ AAIA I ++ L+ ++GPD+PT +I + I + ++ GRG + Sbjct: 191 PPHNLGEILDAAIAKIRISSLKVEDLIKYIKGPDFPTGG-VIHGLSGIVQAFKEGRGRIS 249 Query: 241 MRAVWK----KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 + ++ + ++I+ +P+ ++++ I + N+K+ + ++ D+SD + + Sbjct: 250 LTCKYEHINLPDKNEILITQIPYGSVKSKIVRDIDEIIVNQKIDGIKEVLDQSDRDGISI 309 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 + + + + + +M +LF+ T+L+ Y N N+ +G P + NL E+L ++ + Sbjct: 310 AIKLEKK--ANHESIMKYLFSKTELQVFYNYN-NIAIKNGSPTLLNLNELLDIYIEHLKT 366 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----LMSRFGLTET 412 + L + L K RL ++EG L D++I IR ++ K L+ F ++ Sbjct: 367 INVKILEFDLNKARLRLEVVEGFLRVAQITDQIIATIRASNDGKKGVIEDLIRIFAFSQR 426 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QA AI EL+L L++ + + E+ EL K+ + + IL S+ ++ L L+ + Y Sbjct: 427 QATAIAELRLYRLSQTDFYLYQNEKEELIKQINDFEKILNSDNELKTYLVNILKKIKKTY 486 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI---DAPGLNYKAGD 529 R++ + + E + +++ E + LSQ G+++ D K D Sbjct: 487 PTPRKTQIIDEELKRNYDIEELVVDEKCYVSLSQDGYLKRVSSKTFKTNDFASFGLKEND 546 Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLM 587 + K + ++ G I + + + G + + + ++L+ Sbjct: 547 NLSFLSKATTKDKLLIFSDHGNYAIIPIYKIEEQKSKSFGVHINDFVYFNSYEKIIYVLV 606 Query: 588 ESD---DQKLLMASDAGYGFVCTFNDLVARNRAGKA--LITLPENAHVMPPVVIEDASDM 642 ++ D + + + G G + N + R K ITL ++ ++ V + Sbjct: 607 VNEFSQDYYISLVTQKGLGKRVSLNKFL-ITRQSKISNAITLKDDDRLVD-VRVSKGKQN 664 Query: 643 LLAITQAGRMLMFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 ++ T ++ F LP +S KG+GNK+I + E ++ + + L + Sbjct: 665 IILFTNFNNVVKFSEDALPVISTKGQGNKMIQLSEGEK------VSAMSITKTTDNLILI 718 Query: 702 VGKRKIKLRPEELQKVTGERGRRGT 726 K + P K T R +G Sbjct: 719 TNKNNLIKVPTSHFKFT-PRAAKGK 742 >UniRef50_Q5MZD4 DNA gyrase A subunit n=8 Tax=Cyanobacteria RepID=Q5MZD4_SYNP6 Length = 858 Score = 656 bits (1693), Expect = 0.0, Method: Composition-based stats. Identities = 265/813 (32%), Positives = 408/813 (50%), Gaps = 99/813 (12%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 +D ALH+ + +YL Y+M VI+ RALP DGLKPVQRRI+YAM ELGL F+ Sbjct: 10 ADRILPTALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPDRPFR 69 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VGDVLGKYHPHGD A Y+A+V + Q FS RYPL+ G GN+G+ D+ AAMRYT Sbjct: 70 KSARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSIDNDPP-AAMRYT 128 Query: 122 ESRLSKYSE-LLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 E+RL+ S LL E+G+ T D+V NFD + QEP +LPA+LP +LLNG +GIAVGMAT+I Sbjct: 129 ETRLAPVSHVALLEEIGEETVDFVANFDNSQQEPSVLPAQLPFLLLNGCSGIAVGMATNI 188 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL E+ A IALID+P+ + LL V GPD+PT E+I S+ I Y GRGS+ Sbjct: 189 PPHNLGEIVDALIALIDRPQLSDRDLLRYVPGPDFPTGGEVIGSQ-GILDAYLEGRGSIP 247 Query: 241 MRAVWKKEDGA----------VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESD 290 +R + + E+ ++++ LP+QVS A +E++A + + KL + D+RDESD Sbjct: 248 VRGIARIEEIQPGKGRHRRPVIIVTELPYQVSKAGWIEKVADLVNDGKLQGIADIRDESD 307 Query: 291 HENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEW 350 E R+VI R + D+V+ L+ T L+ ++ L I ++G+P +L ++L ++ Sbjct: 308 REG-MRVVIELRRD-AQADKVLEQLYKRTALQSNFGAILLAI-VEGQPQQLSLKQLLEQF 364 Query: 351 LVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRF 407 L FR T+RRR + LE+ +RL ILEGLL + ++D +IEI+R + + L F Sbjct: 365 LSFREGTLRRRYGHELEQTERRLMILEGLLRSLSDLDGLIEILRQSPDGGTARARLQVHF 424 Query: 408 GLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQA 467 L E QA+A+L + +R + LE+ +++ E + L +++ +LQ +L + LKK+L+ Sbjct: 425 DLNERQADAVLSMPMRRITSLEQEQLQQEAANLREQQARLQTLLGDRPTLLKALKKDLRD 484 Query: 468 DAQAYGDDRRSPL-QEREEAKAMSEHDMLPSEPV-------------------------- 500 + +G R+ L + EA A P P+ Sbjct: 485 LKRRFGSPHRTRLPEIPPEAIAAPRQVTAPVAPISAPTPATAGPIQGELIFNSATDSAVP 544 Query: 501 ----------------TIVLSQMGWVRSAKGHDIDAPGLNYKAG-----DSFKAAVKGKS 539 + LS +++A +++ L K+G D K Sbjct: 545 DSAPVIAPRFAFQESTWLCLSDREQLQAASATELEPW-LKAKSGAQERTDFPKVLQWADP 603 Query: 540 NQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTL-PPGATVDHML---MESDDQKLL 595 Q ++ + + GR+Y + P+ L + L + S+++ LL Sbjct: 604 RQDLLVITAEGRAYRRSLREV-----HPGPIANLLPTGRQSTAIAATLLLPLASEERSLL 658 Query: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 S G +L + G L+ L E ++ + +L + GR+L Sbjct: 659 PLSSQGRVKRLALTELAEISNRGLQLLKLAE-EEIIQAACLCAPQQEVLLGSSGGRLLRL 717 Query: 656 PVSDLPQLSK-GKGN-KIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRP-- 711 +S+LP S+ +G +++ + E G LP L + +K P Sbjct: 718 SLSELPLASRISRGQPRLLRLREGEQPLGC------LSLPSGQDLLLVSTLGLVKRLPLG 771 Query: 712 -----------EELQKVTGERGRRGTLMRGLQR 733 + T +R R L+ + Sbjct: 772 LLRLCRAGDLGNNAFRFTDKRDRLIALLPAPSQ 804 Score = 43.3 bits (101), Expect = 0.035, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 72/222 (32%), Gaps = 19/222 (8%) Query: 485 EAKAMSEHDMLP---SEPVTIVLSQMGWVRSAKGHDIDAPG------LNYKAGDSFKAAV 535 ++ A++ +LP E + LS G V+ ++ L + +AA Sbjct: 638 QSTAIAATLLLPLASEERSLLPLSSQGRVKRLALTELAEISNRGLQLLKLAEEEIIQAAC 697 Query: 536 KGKSNQPVVFVDSTG--RSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQK 593 Q V+ S G ++ + L S +G+P L L G L Q Sbjct: 698 LCAPQQEVLLGSSGGRLLRLSLSELPLASRISRGQP--RLLRLREGEQPLGCLSLPSGQD 755 Query: 594 LLMASDAGYGFVCTFNDLVARNRAGK---ALITLPENAHVMPPVVIEDASDMLLAITQAG 650 LL+ S G L+ RAG + + ++ + + + + Sbjct: 756 LLLVSTLGLVKRLPL-GLLRLCRAGDLGNNAFRFTDKRDRLIALLPAPSQGLAIFASDQR 814 Query: 651 RMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYV 691 +S + +G + N+ S E + L V Sbjct: 815 LWQR-SISTIAVTGTDAEGQTLFNLRSTETLQSATTLEGDRV 855 >UniRef50_B8DTB4 DNA gyrase subunit A n=23 Tax=Actinobacteridae RepID=B8DTB4_BIFA0 Length = 982 Score = 656 bits (1692), Expect = 0.0, Method: Composition-based stats. Identities = 253/823 (30%), Positives = 378/823 (45%), Gaps = 112/823 (13%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 L E ++L Y+ VI RALP DG+KPVQRRIVY M ++ L + + KSAR Sbjct: 22 ETPLAEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLLPTRPYMKSARV 81 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VG+V+GK HPHGDSA YEAMV +AQPF+ R PLVDG GN+G+ DD AA RYTE+RL+ Sbjct: 82 VGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLDDGP--AASRYTEARLA 139 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 + + +++ + T D+VPN+D L+EP +LP+ +PN+L+NG +GIAVGMAT++ HNL Sbjct: 140 PAALGMNADIDEDTVDFVPNYDNKLKEPTVLPSAIPNLLVNGASGIAVGMATNMATHNLG 199 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 EV AA ++ P TLD L+ V GPD+P II R IR YE GRG V R+ Sbjct: 200 EVVAAAKYVMKHPDATLDDLMQYVPGPDWPGG-GIIIGRQGIRDAYETGRGVVTTRSATH 258 Query: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 E+ A+V++ LP+ V RVLE+I+ ++N KL + D +D N TR+VI Sbjct: 259 VENLTARKKAIVVTQLPYMVGPERVLERISEGVKNHKLDGISGAIDLTDRHNGTRIVIEL 318 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 ++ D V+ LF T L++++ IN N+ ++GRP L +L W+ RR +RRR Sbjct: 319 KT-GFDPAAVLAQLFKHTPLQENFAIN-NVALVNGRPHTLGLRSLLDVWIEHRRGVIRRR 376 Query: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAEAIL 418 +R +K L RLH++EGLL+A ++IDEVI +IR+ D+ K LMSRF L + QA+ IL Sbjct: 377 SEFRRQKALDRLHLVEGLLLALVDIDEVIRVIRSSDDAEAAKNGLMSRFSLDDIQAQYIL 436 Query: 419 ELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRS 478 +L+LR L K+ +++ E+ EL+ +L+ IL S ++ ++ E+ YG RR+ Sbjct: 437 DLRLRRLTKMSRIELESERDELQSSITELERILGSAALLDGVVIDEMDKAVATYGTPRRT 496 Query: 479 PLQEREEA-----------------------------------------KAMSEHDMLPS 497 L + + +E + Sbjct: 497 VLLDEGDDGRLVPVVAHGDDMPSDAALDAARHAENVLDAADAVAAARKAGETAEALRIED 556 Query: 498 EPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGR 551 EP I LS G + + A + D + + ++ V S GR Sbjct: 557 EPCVIALSASGLIARMSIDALTIWAKRGAHTEKREPDDVIVSLMPARTRADYALVTSAGR 616 Query: 552 SYAIDPITLP--SARGQ-----GEPLTGKLTLP------PGATVDHMLMESDD------- 591 + LP G G T LT PG V L D Sbjct: 617 MVLAHVVELPNLEVTGHLSLTGGIEATELLTSTESTDPVPGERVIATLALRDTVGQDDTA 676 Query: 592 ---QKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQ 648 + + + G ++I L + ++ D D + ++ Sbjct: 677 AQLPPVGLGTRNGIVKRWNRE--SPTTMDSWSIIDLKDGDELLVAADAHD-DDRFVFVSS 733 Query: 649 AGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYV--------------LP 693 +L + ++ + G I++ +A V P Sbjct: 734 DSSLLTYEARNVRPQGRTAAGMAGIHLADGCTVLSCAVVAHADVEWHDAEHDDAGNLLSP 793 Query: 694 PQSTLTIHVGK----------RKIKLRPEELQKVTGERGRRGT 726 + + V K+ P EL G R G Sbjct: 794 ASGAVVLTVAGDVDALPGTENGAAKVTPLELYPTKG-RATGGV 835 >UniRef50_Q98RX7 DNA gyrase A-subunit n=2 Tax=Cryptophyta RepID=Q98RX7_GUITH Length = 877 Score = 653 bits (1684), Expect = 0.0, Method: Composition-based stats. Identities = 235/774 (30%), Positives = 403/774 (52%), Gaps = 42/774 (5%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 L +Y+ Y++ VI RALP I DGLKPV RRI++AM EL L A ++K AR Sbjct: 67 NTELQNEMAKSYMEYALSVIYGRALPDIRDGLKPVHRRILFAMYELNLVPEAPYRKCARV 126 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VG+VLGKYHPHGD+A Y+++V M+Q FS R L+ G GN+G+ D AAMRYTE +LS Sbjct: 127 VGEVLGKYHPHGDTAVYDSLVRMSQEFSMRKVLILGHGNFGSIDHDPP-AAMRYTECKLS 185 Query: 127 KYS-ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 S + LL EL T ++V NFDG+ EP ++P+ +P+ILLNG++GIAVGMAT IPPHNL Sbjct: 186 NLSVDTLLKELDFKTVEYVYNFDGSSIEPSIMPSVIPSILLNGSSGIAVGMATSIPPHNL 245 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245 E+ ++ +ALID T +L+ + PD+PT II + +YE G S+ +R Sbjct: 246 GEIVRSCLALIDNYNITNQELIKYLPCPDFPTGGLII-GNNSCKDLYEKGISSIILRGKI 304 Query: 246 KKE---------DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 E ++I+ +P Q++ + ++ ++A + +K + + D+RDESD + R Sbjct: 305 NVEFSKSVKKVSKYNLIITEIPFQINKSMLIAKLADLVNSKIIQGISDIRDESDRKG-IR 363 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 +VI + + D +++ + + L+ ++ + I +D +P + NL EILS +L FRR Sbjct: 364 IVIEIKRDY-DPIKIVKIILKKSSLQITFSSYMLCI-VDKQPILVNLKEILSLFLHFRRK 421 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQ 413 +R+ + + L+ +LK+ +IL+G+ ++ ID IE I+ N E K LM FGL++ Q Sbjct: 422 IIRKNIKFELKNILKKKNILKGISISLEKIDLTIEKIKKSINNLEAKCILME-FGLSQEQ 480 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 +EAIL L+LR L KLE KI + + ++L+ IL+S ++ ++K +++ ++ YG Sbjct: 481 SEAILNLQLRRLTKLESKKIDNDFEITKSSLNELKCILSSNILIDGIIKNQIKNISEIYG 540 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK------- 526 R++ L + E + + + I+++Q +++ ++ K Sbjct: 541 FPRKTLLINSINENIIEELETIENYESVIMITQY-YIKKMFLESFESQTRGTKGKRGLII 599 Query: 527 -AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVD 583 GD + ++ + S G +Y I +P +G P+ L + Sbjct: 600 SDGDEISHFFSCNNRDDLIAISSGGIAYKIKVSRIPISKRNSKGTPILSILKGLENNQIS 659 Query: 584 HMLMESD---DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDAS 640 ++ S+ ++ L++ + G + ++ + G ++TL EN + + Sbjct: 660 SIIATSNCETEKFLVLLTQKGLIKRTSISNFNNISSRGLIILTLDENDSLKWVRKCYN-D 718 Query: 641 DMLLAITQAGRMLMFPVS--DLPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVLPPQST 697 D ++ T+ G++L F S +L + KG K I++ S + D + + Sbjct: 719 DSVIISTKKGKLLRFNASQKELKSTGRTSKGIKSIDLDSNDIISDFDIIPSQAITNFIIL 778 Query: 698 LTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 LT ++IK+ ++QK RG++G + L+ + R + E Sbjct: 779 LTEMGYGKRIKVTELKIQK----RGKKGIKVISLRENVN-DYLISSRFCIENEE 827 >UniRef50_C3CV72 DNA topoisomerase n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CV72_BACTU Length = 740 Score = 652 bits (1682), Expect = 0.0, Method: Composition-based stats. Identities = 231/758 (30%), Positives = 400/758 (52%), Gaps = 54/758 (7%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 M E ++ + ++++++Y++ V+ DRALP + DGLKPV RRI+YAM +LG+ + Sbjct: 1 MGGKIETISYSKEMKSSFIDYALTVVTDRALPDVRDGLKPVHRRILYAMGDLGMYPDKAY 60 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VG+V+GKYHPHGDSA YE+MV AQ F PL+DG GN+G+ D S AAMRY Sbjct: 61 KKSARIVGEVIGKYHPHGDSAVYESMVKQAQDFVKNAPLIDGHGNFGSVDG-DSAAAMRY 119 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RLS + ++ +L +G D+ NFD + +EP +LPA++PN+L+NG GIAVGMA Sbjct: 120 TEARLSPVAMEMIQDLSKGVVDFRDNFDASEREPVVLPAKVPNLLVNGGVGIAVGMAYKT 179 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPH + V IA D+ ++ L+DI++ PDYP+ IIT++ E+R +Y G G Sbjct: 180 PPHGVNSVVDTLIAYADKQDIDIESLIDIIEAPDYPSGG-IITNKNELRDLYRTGIGKAV 238 Query: 241 MRAVWKKED-----GAVVISALPHQV--SGARVLEQIAAQMRNKKLPMVDDLRDESDHEN 293 +RA ED +V+ +P+ S + ++ + KKL + ++ DESD + Sbjct: 239 IRAKIDIEDAGYGRKNLVVKEIPYPYSGSKTNLTYKLITMVIEKKLEEIVNVTDESDKDG 298 Query: 294 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVF 353 ++ V + VD+D ++N L++ T L+ S ++ ++G P NL + + F Sbjct: 299 IRIVLEVKK--GVDIDNLLNKLYSKTPLQSSESYQY-LVLVNGVPTTINLKDYCKHYFDF 355 Query: 354 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMS----- 405 +++ R+R Y L K R ILEGL+ A +D +IE++R E K LM Sbjct: 356 QKEITRKRYEYLLSKAQVRKEILEGLVKAEEMMDTIIEMLRGAKKSKEAKVCLMEGNTES 415 Query: 406 -------------RFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILA 452 +F TE QA+AIL+++L+ L LE ++ E E+ E ++ + +L Sbjct: 416 ISFKTKKHENIAKKFAFTEKQAQAILDMRLQKLIGLEVEQLNQEYKEVLAEMEEYELVLG 475 Query: 453 SERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS 512 SE++M ++KK L+ + +G +RR+ +Q E K + + + E V +++ + G+ +S Sbjct: 476 SEKEMLKVIKKYLRGFKKDFGRERRTEIQ---EKKTIEYVEEIKEEDVWVLIDKFGYTKS 532 Query: 513 AKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPL 570 I + + +K + K+ + + GR Y I +P + +G P+ Sbjct: 533 V--DTISVERSSEETLSEYKQEILTKNTSKLSVFTNQGRLYQIKLADIPKVKIKDKGVPI 590 Query: 571 TGKLTLPPGATVDHM--LMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENA 628 + ++ E + ++++M + G ++L++ +R+ L E+ Sbjct: 591 QRLGKMKKNEYPLYITTNTELETERVIMLTKTGLIKQTLCSELIS-SRSVVVATKLEEDD 649 Query: 629 HVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLA 687 V+ I + + +L ++ G +L F ++++P L K KG K +++ ED + Sbjct: 650 EVIQITPINEVDEDVLVFSKKGYILRFSINEIPVLRKNAKGVKAVSLME------EDVIE 703 Query: 688 QLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRG 725 +Y+L + + ++I+L E RG++G Sbjct: 704 GVYILNENNKDVKQLNGKQIELSKVE----RKTRGKKG 737 >UniRef50_Q7NB60 ParC/GyrA n=1 Tax=Mycoplasma gallisepticum RepID=Q7NB60_MYCGA Length = 797 Score = 651 bits (1681), Expect = 0.0, Method: Composition-based stats. Identities = 215/731 (29%), Positives = 383/731 (52%), Gaps = 21/731 (2%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 L + ++ Y+ Y+I +RALP I DGLKPVQRR++Y M LGL + ++KSA TVG+ Sbjct: 12 LDDIMSLSFGRYAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKSYRKSAATVGE 71 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 V+GK+HPHGDS+ YEA+V M Q + PL+D QGN G+ D + AAMRYTE+RLS Y Sbjct: 72 VIGKFHPHGDSSIYEALVRMTQSWKNNIPLIDMQGNNGSIDG-DNAAAMRYTEARLSHYG 130 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 L+L + + T ++V NFD + EP +LP+ LPN+L+NG+TGIA G AT+IPP NL+E+ Sbjct: 131 NLMLENINKETVNFVNNFDDSEVEPTILPSLLPNLLVNGSTGIAAGYATNIPPFNLKELI 190 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED 249 I ID P L+ +L ++ GPD+PT II I+ Y G+G + +RA E+ Sbjct: 191 DVIIHRIDSPNCKLESILKLMPGPDFPTGG-IILDDDGIKNAYLTGKGKIVIRAKIVNEN 249 Query: 250 GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMD 309 +V++ +P + + A ++ I + KLP ++++RDESD ++ + + Sbjct: 250 DQLVVTDIPFETNKASIIRSIEEILEANKLPQLEEVRDESDRFGIRVVLQTNTKDEKVLA 309 Query: 310 QVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKV 369 + N+L+ T L+ +Y N N++ +P ++ L +L +R +++ L+K Sbjct: 310 TIKNYLYKYTQLQINYSFN-NVVIDQKKPIQMSIFNYLDSYLNHAYTILRNAISFDLKKD 368 Query: 370 LKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEAILELKLRHLA 426 KRL ++ GL+ A ID++I II+ + + A L++++ + QAEAI+ L+L L Sbjct: 369 QKRLEVINGLIKATSIIDQIILIIKKSKDKQDAINNLINKYQFSAIQAEAIVSLRLYRLT 428 Query: 427 KLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEA 486 + + ++ E+ L+ Q Q +L + +N+ LK+ L++ + + RRS + E Sbjct: 429 NTDILALKEEKKSLDTNIKQYQLLLKDQNALNDHLKEILRSYKKLFNTKRRSTIGGNIEK 488 Query: 487 KAMSEHDMLPSEPVTIVLSQMGWVRS---AKGHDIDAPGLNYKAGDSFKAAVKGKSNQPV 543 ++E ++ + + +V S G +++ + ++ L K D +K S V Sbjct: 489 LVINEASIIEKKELYLVSSVDGLIKTIAYDQNKQLNPTSLKIKQDDYLSDLIKVSSLNKV 548 Query: 544 VFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLMESD-DQKLLMASDA 600 F+ + G I+ + A+ + G + T+ + ++ SD + ++++ S Sbjct: 549 AFITNYGNVVVINAHKIKQAKPREIGMDINELTTIKDNEKIVKLVELSDQNDRIVLVSKY 608 Query: 601 GYGFVCTFNDLVA-RNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD 659 G + NDLV ++ ++L ++ ++ +I D + L+ IT+ L F +++ Sbjct: 609 GMIKQISVNDLVNIKSTKPTTCMSLKDDDELVCANLISDPNAELIIITKNAYALRFFINE 668 Query: 660 LPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVT 718 + K G + I + + + G D + L + K+ KL+ ++ Sbjct: 669 VNLTGLKSMGVRAIKLKTNDQVIGFDQIKNSI-----DQLVLVKNKQIKKLKVSLIE--N 721 Query: 719 GERGRRGTLMR 729 R +G + Sbjct: 722 QSRANQGKSLG 732 >UniRef50_B5ZBW2 DNA topoisomerase IV, A subunit family protein n=22 Tax=Ureaplasma RepID=B5ZBW2_UREU1 Length = 855 Score = 647 bits (1670), Expect = 0.0, Method: Composition-based stats. Identities = 226/734 (30%), Positives = 386/734 (52%), Gaps = 35/734 (4%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 L +Y Y+ Y+I DRALP I DGLKPVQRRI+YAMSELG+ +KKSART Sbjct: 10 NTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPYKKSART 69 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VG+V+GKYHPHGDS+ YEAMV M+Q + L+D GN G+ D + AAMRYTE+RLS Sbjct: 70 VGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDIHGNKGSIDG-DNAAAMRYTETRLS 128 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 K + ++L+ L + + PNFD + +EP +LP+ PN+L+NG TGIA G AT IPPHN Sbjct: 129 KIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATSIPPHNPN 188 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 EV A I ID P ++++L+ I PD+PT EI ++ G G +RA + Sbjct: 189 EVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEI-HDLNGCANAHKTGEGKFVIRASIE 247 Query: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 + ++I+++P++ + A ++++I + NK++ + ++RDESD + + ++ Sbjct: 248 FKTSEAKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSIIIDTK 307 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 + V+++ V N+L+ T LE SY I + P + +L L + D + + Sbjct: 308 K--DVNLENVKNYLYKKTSLEISYNTKFIAI-VHRTPTLVSLSTYLDAQINHSLDVINKV 364 Query: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQAEAIL 418 Y L KVL R+ I+EGL+ IDE+I+IIR D + K AL+ F T QAEAI+ Sbjct: 365 DLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQAEAII 424 Query: 419 ELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRS 478 ++L +L + + +R E L+++ L+ + S + N LK+++ + +G R++ Sbjct: 425 MMRLHNLTRTDIFDLRNEWESLQQQAKILKERIKSLQVRKNYLKQKMIEFKKEFGYQRKT 484 Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG---LNYKAGDSFKAAV 535 L + ++E M+ + + +V+S+ G+++ ++ L K D Sbjct: 485 KLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKIVSKKSFESSKYDELGLKTNDLLFYHN 544 Query: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLM-----E 588 S+ ++ + S + + + R + GE L V + + + Sbjct: 545 VINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKVVAVYVCNEQFK 604 Query: 589 SDDQKLLMASDAGYGFVCTFNDL-VARNRAGKALITLPENAHVMPPVVI-EDASDMLLAI 646 D+ +L++ S N+L + +N +++ L EN ++ +I +D + ++AI Sbjct: 605 VDEHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLIKKDHNQFVVAI 664 Query: 647 TQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQST---LTIHV 702 ++ G +LMF V ++ L++ KG KI+ + + D ++ + ++P L + Sbjct: 665 SKLGLVLMFLVHEINCLNRLAKGIKIMKL------KPNDEISSILIVPNNGYSIQLFLDQ 718 Query: 703 GKRKIKLRPEELQK 716 G + + +L K Sbjct: 719 GNKCFSISELKLSK 732 >UniRef50_P73077 DNA topoisomerase 4 subunit A n=5 Tax=Bacteria RepID=PARC_SYNY3 Length = 920 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 247/774 (31%), Positives = 390/774 (50%), Gaps = 76/774 (9%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 LHE E +YL Y+M VI+ RALP + DGLKPV RRI+YAM ELGL F+K AR VGD Sbjct: 16 LHEEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPFRKCARVVGD 75 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 VLGKYHPHGD + Y+A+V M Q FS RYPL+ G GN+G+ D+ AAMRYTE+RL+ + Sbjct: 76 VLGKYHPHGDQSVYDALVRMVQDFSSRYPLLAGHGNFGSVDNDPP-AAMRYTETRLAPIA 134 Query: 130 E-LLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 +L + + D+ NFD + +EP ++PA+LP +LLNG +GIAVGMAT IPPHNL EV Sbjct: 135 MGAMLEGISEAIVDFTGNFDNSQEEPTVVPAQLPLLLLNGCSGIAVGMATSIPPHNLGEV 194 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248 I LI++P + +L ++ GPD+PT I+ S I + Y+ GRG + +R V E Sbjct: 195 VDGLIGLINKPDLSDQELFKLIPGPDFPTGGHILDSE-GILQAYQTGRGLIPVRGVSHIE 253 Query: 249 -----------DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 A+VI+ LP QV+ A +E+IA+ + + KL + DLRDESD R+ Sbjct: 254 TIRGEKKRSHNRTAIVITELPFQVNKAAWIEKIASLVNDGKLDGISDLRDESDRTG-MRV 312 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 VI + + + + ++ L+ T L+ ++ + + ++ +P +L +IL E+L FR DT Sbjct: 313 VIELKRD-AEPNAILQKLYRMTPLQSNFGVIF-LALVNNQPVQMSLRQILQEFLQFREDT 370 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQA 414 + R+ L + +RL +L GLL+ N+D +IEI+R + K L R G++ Q Sbjct: 371 LLRQYENELGENRRRLELLTGLLIGLENLDALIEILRFAADGTTAKIQLQERLGISLQQG 430 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 +AIL + +R + LE K++ E ++L + +QL+ ++ ++ LKKEL+ + + D Sbjct: 431 DAILGMPMRRITGLEREKLQQEHTDLAQRIEQLETLIGDRQERLKALKKELRGLKKKFAD 490 Query: 475 DRRSPLQEREEAKAMS---EHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSF 531 +RR+ + + AK D LP + V SQ SA ++D+PG + Sbjct: 491 ERRTKILQGMPAKIEPLPVNQDPLPEATIPPVESQ-----SAPEEELDSPGEPEQE---- 541 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDD 591 + +++ P P+A E L L T + E+ Sbjct: 542 --QLVLENSSP------------------PTADSAPEAKQDDLNLAVKPTPKTVKQEAQP 581 Query: 592 QKLLMASDAGYGFVCTFND-------------LVARNRAGKAL-----ITLPENAHVMPP 633 ++A+ + V N ++ N G+ +T + + Sbjct: 582 SPEVIATHSKLVSVAEKNPLTLFTPQTPPAEAFLSINLQGEIAWHPEELTSANSFEPLDQ 641 Query: 634 VVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLP 693 + L+ I G+ ++D+P L+ + ++ I A R + LP Sbjct: 642 QFSIQGRETLIVIGDHGKAFPVAIADIPPLAVTR-IPLLQILPKSAQRDATTVTFQGFLP 700 Query: 694 ----PQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPR 743 PQ L + R L +ELQ+ G RG ++ + ++ +P Sbjct: 701 PPEQPQDLLLVSQQGRVKLLAGQELQE-LGPRGLSLMKLKNGDLLQFAQLVTPV 753 Score = 62.6 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 22/191 (11%) Query: 531 FKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP---PGATVDH--- 584 + + ++ + G+++ + +P PL L TV Sbjct: 639 LDQQFSIQGRETLIVIGDHGKAFPVAIADIPPLAVTRIPLLQILPKSAQRDATTVTFQGF 698 Query: 585 MLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHV--------MPPVVI 636 + Q LL+ S G + +L G +L+ L + + P Sbjct: 699 LPPPEQPQDLLLVSQQGRVKLLAGQELQELGPRGLSLMKLKNGDLLQFAQLVTPVNPASA 758 Query: 637 EDASDMLLAITQAGRMLMFPVSDLPQL---SKGKGNKIINIPSAEAARGEDGLAQLYVLP 693 ++ L+ T GR+L F + + +G + + + + E+ G L P Sbjct: 759 QNPGKNLVIATSNGRLLRFDPAQVGLTCSSPSAQGQEAMRLRATESLVGV-----LMASP 813 Query: 694 PQSTLTIHVGK 704 L + Sbjct: 814 GDRVLLLTQAG 824 >UniRef50_Q7V9E4 DNA gyrase/topoisomerase IV, subunit A n=17 Tax=cellular organisms RepID=Q7V9E4_PROMM Length = 829 Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats. Identities = 252/765 (32%), Positives = 397/765 (51%), Gaps = 55/765 (7%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + + +ALH+ + +YL Y+M VI+ RALP DGLKPVQRRI++AM ELGL ++K Sbjct: 4 ERLQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPYRK 63 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 AR VGDVLGKYHPHGD A Y+A+V + Q FS R+P++DG GN+G+ DD AAMRYTE Sbjct: 64 CARVVGDVLGKYHPHGDQAVYDALVRLVQNFSSRFPVLDGHGNFGSVDDDPP-AAMRYTE 122 Query: 123 SRLSKYSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 +RL+ + + LL E+G+ T D+ NFDG+ QEP +LPA+LP +LLNG +GIAVGMAT IP Sbjct: 123 TRLASIAHMALLDEIGEETVDFTANFDGSQQEPSVLPAQLPFLLLNGCSGIAVGMATSIP 182 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNL EV IALI +P + D+LL ++ GPD+PT EI+ I + Y GRGS+ M Sbjct: 183 PHNLGEVVDGLIALIRKPDLSDDKLLGLIPGPDFPTGGEILLGT-GIHETYLKGRGSIPM 241 Query: 242 RAVWKKED----------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDH 291 R V E+ AVV++ LP+Q+S A +E++A + N K+ + D+RDESD Sbjct: 242 RGVAHVEEIQPGKGRHRRSAVVVTELPYQLSKAGWIEKLADLVNNGKIGGIADIRDESDR 301 Query: 292 ENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWL 351 E R+V+ R + + + V+ L T L+ ++ + + ++G+P +L ++L +L Sbjct: 302 EG-MRIVVELRRD-ANPENVLGDLHRRTSLQSNFGA-ILLALVNGQPQQLSLRKLLQTFL 358 Query: 352 VFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRN---EDEPKPALMSRFG 408 +R TV RR N+ LEK RL ++EGL+ A + VI +I+ + LM + Sbjct: 359 EYRELTVIRRTNHALEKTKARLEVVEGLITALNALQAVIAMIQEAADAAAARARLMVQLD 418 Query: 409 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 L E QA+A+L + LR L LE+ +R E EL+++++QLQ +L + M +L +EL+ Sbjct: 419 LNEKQADAVLAMPLRRLTSLEQSSLRQEAKELQEKQEQLQFLLENRESMLEVLIQELRQL 478 Query: 469 AQAYGDDRRSPLQEREEAKAMSEHDML-PSEPVT-------------IVLSQMGWVRSAK 514 + + + RR+ L E + P+ V I++ Q V+ Sbjct: 479 KKRFNNPRRTRLVEGGDDLVAERAANQRPNAEVQRQQALSALPSDGRILIQQDSQVKVMS 538 Query: 515 GHDIDAPGLNY--KAGDSF---KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEP 569 + LN K D + + + ++ V + GR + A Q Sbjct: 539 PQILGRLHLNEACKLSDGPSPARLILPIEPAPRLLAVTNNGRV---ALVRWEFAGQQPGS 595 Query: 570 LTGKLTLP-PGATVDHMLMESDDQKLL--MASDAGYGFVCTFNDLVARNRAGKALITLPE 626 L L T+ ++ DQ L + S G +++ + ++ L + Sbjct: 596 LERFLPGGLEKETLINIFPLPVDQNLSLGLLSSDGRFKRLPIEEVMELSGRAATIVKLKD 655 Query: 627 NAHVMPPVVIEDASDMLLAITQAGRMLMFPV--SDLPQLSK-GKGNKIINIPSAEAARGE 683 ++ I A+D ++ + GR++ V +P + K +G + + E Sbjct: 656 G-VILKSAFICKANDDVILASNIGRVIRINVNNDSMPLMGKLAQGPMTMRL------LPE 708 Query: 684 DGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVT-GERGRRGTL 727 + + PP T+ + R K + + +RG G + Sbjct: 709 EMVVGAVSCPPNCESTVLLATRLGKFAKILVSSIRICQRGDLGEI 753 >UniRef50_C4Z0V3 DNA gyrase subunit A n=29 Tax=Bacteria RepID=C4Z0V3_EUBE2 Length = 769 Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats. Identities = 225/792 (28%), Positives = 384/792 (48%), Gaps = 87/792 (10%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 M++ R E + +Y++YSM VI RALP + DGLKPVQRR++YAM LGLN Sbjct: 1 MAEKIIRTEYSEVMQKSYIDYSMSVITARALPDVRDGLKPVQRRVLYAMDRLGLNYDKPH 60 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 +KSAR VGD +GKYHPHGDS+ YE +V+++Q F LVDG GN+G+ + AAMRY Sbjct: 61 RKSARIVGDTMGKYHPHGDSSIYETLVVLSQDFKKGMALVDGHGNFGSIEGDG-AAAMRY 119 Query: 121 TESRLSKYSELL-LSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 179 TE++L K+++ + L++L + D+VPNFD T +EP++LP R+PN+L+NG GIAVGM T+ Sbjct: 120 TEAKLKKFTQDVYLADLDKNVVDFVPNFDETEKEPEVLPVRVPNLLVNGADGIAVGMTTN 179 Query: 180 IPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSV 239 IPPHNL EV A A +D T D+L+ + GPD+PT I+ +++E+ IYE G G + Sbjct: 180 IPPHNLSEVVDAVCAYMDNEDITTDELMQLCPGPDFPTGG-IVINKSELGAIYETGTGKI 238 Query: 240 RMRAVW-------KKEDGAVVISALPH---QVSGARVLEQIAAQMRNKKLPMVDDLRDES 289 ++R + E +VI+ +P+ + + + + + + KK + D+ +ES Sbjct: 239 KLRGKVIFEPAKNRSEKDKLVITEIPYTMIGANIGKFISDVVSLIETKKTTDIVDISNES 298 Query: 290 DHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSE 349 E R+V+ + N D+ + N L+ T LE ++ +N+ I +DGRP + +I+ Sbjct: 299 SKEG-IRIVLELKKN-ADVKNLENLLYKKTKLEDTFGVNMLAI-VDGRPETLGIKDIIKH 355 Query: 350 WLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLN---------------------IDE 388 + F+ + R+ LEK I EGL+ A ++ Sbjct: 356 HINFQYELATRKYTTLLEKEKANREIKEGLIRACDIIDLIIEILRGSANLKMAKDCLVNG 415 Query: 389 VIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQ 448 +E I+ + E + TE QA AILE++L L LE + ++ E E K+ ++ + Sbjct: 416 NVEGIKFKSEQSKKQAAGLDFTERQAGAILEMRLYKLIGLEILNLQKEYDECVKKIEKYE 475 Query: 449 GILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMG 508 IL S ++M ++K +L + YG +RR+ +++ E A + E +P V ++ + G Sbjct: 476 KILGSRKEMAKVIKADLLNIKKEYGVERRTVIEDGEAA--VFEEKKIPEMEVMFIMDRFG 533 Query: 509 WVRSAKGHDIDAPGLNYKAGDSF----KAAVKGKSNQPVVFVDSTGRSYAIDPITLP--S 562 + R+ + + D+ K + + + TG + + LP Sbjct: 534 YARTIDMAAFE------RNKDAVFNENKYVIPVMNTDKICIFTDTGDLHQLKIKDLPFTK 587 Query: 563 ARGQGEPLTGKLTLPPGATVDHMLMESD---DQKLLMASDAGYGFVCTFNDLVARNRAGK 619 R +G P+ + + + +QK+L + G + + R Sbjct: 588 FRDKGTPIDNLCNYDSSKEIIVYITPFERLKNQKMLFVTRQGMMKLVDSEEFQVAKRT-V 646 Query: 620 ALITLPENAHVMPP---------------------VVIEDASDMLLAITQAGRMLMFPVS 658 A L ++ ++ + +++ ++ T+ G L FP++ Sbjct: 647 ACTKLADDDKLIGMYSTDARVEIYSKFSLDGEIKEEEVVESNQNVIVQTENGVFLKFPLT 706 Query: 659 DLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKV 717 D+P K G + I + +D + +++L T+ + I + Sbjct: 707 DIPMKKKSAVGVRGIKLSK------DDYIEDVFLLTEGDEFTMEYKGKSISFAKMK---- 756 Query: 718 TGERGRRGTLMR 729 T R +GT +R Sbjct: 757 TAHRDTKGTKIR 768 >UniRef50_Q83G39 DNA gyrase subunit A-like protein n=2 Tax=Tropheryma whipplei RepID=Q83G39_TROWT Length = 824 Score = 638 bits (1647), Expect = 0.0, Method: Composition-based stats. Identities = 232/746 (31%), Positives = 383/746 (51%), Gaps = 40/746 (5%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 ++ + L ++++L Y+ VI RALP DGLKPVQRRI+Y MS +GL+ Sbjct: 18 NEKITDVDLLHQMQDSFLEYAYSVIHSRALPDARDGLKPVQRRILYTMSRMGLSPDKAHV 77 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K AR G+V+GK HPHGD+A Y+ +V M+Q F+ R PL+DG GN+G+ +D AA RYT Sbjct: 78 KCARVTGEVMGKLHPHGDAAIYDTLVRMSQDFTMRIPLIDGHGNFGSLNDGP--AASRYT 135 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+RLS+ + ++++L D+VPN+D +P++LPA LPN+++NG++GIAVGMAT IP Sbjct: 136 EARLSRAAVAMINDLESNVVDFVPNYDNQFTQPEVLPALLPNLIVNGSSGIAVGMATSIP 195 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNL+E +AAI L+ +++L+Q++ I+ GPD+PT II + ++IY G+GS ++ Sbjct: 196 PHNLQETVRAAIYLVRNRQSSLEQIMKILPGPDFPT-GSIIVGKEAFKEIYATGKGSFKI 254 Query: 242 RAVWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 RA + +VI+ LP+ V RV+E+I + ++ + D+ D SD +N + Sbjct: 255 RAKISIDYAGIGHTNLVITELPYMVGSERVIEKIKQGVNAHRIDGILDVTDLSDRKNGLK 314 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 LVI + N ++VM++L+ T LE+S+ +N + +DG+P +L++L ++ R Sbjct: 315 LVIGIKPN-FSPNEVMDNLYRHTPLEESFSVNS-VALIDGKPKTLGMLDMLKVFIDHRVC 372 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQ 413 + RR + L KRLH+++GLL+A ++ID+ I IIRN + E + LM +T Q Sbjct: 373 VITRRSKFYLATHKKRLHMIDGLLLALVDIDKTISIIRNSEGIKEARKNLMKCLNVTRDQ 432 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 AE IL+++L L KL +K++ EQ EL K L+ IL+ K++ +L EL+ AQ Sbjct: 433 AEYILDIRLNMLTKLSTIKLQSEQEELRKTTQDLEEILSDPNKIDAILIDELKKVAQRLP 492 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAG-D--- 529 RR+ L+ ++K P +VL+ G++ + + ++ L+ D Sbjct: 493 SPRRTILESSVKSKKQKT-----DYPRQVVLTTNGFIFTIEVNNDLISELSQPETFDMAF 547 Query: 530 --------SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGAT 581 K+++ + + S G+ PI LP L L Sbjct: 548 NTHSEPLRVVKSSIVCGVRSRIGALTSAGKVIPFTPIGLPVLDSGFVTAKSFLGLENDEE 607 Query: 582 VDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASD 641 + + L +A+ +G T R +ITL V+ + Sbjct: 608 AVLLFELHQKESLAIATSSGIVKRVTPAIWPDRTE---RVITLSAGDRVVGAARGVSSCG 664 Query: 642 MLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI 700 + IT G +L + + ++ +G + + + + ++ Y + Sbjct: 665 YFVFITAKGNLLHYSAGLVNPQNRPARGVAGVTLKDDD----DRVISFGYTEDVDRANVL 720 Query: 701 HVGKRKIKLRPEELQKVTGERGRRGT 726 V KR R Q T R RG Sbjct: 721 TVSKRMTTSRLSSYQ--TRGRATRGV 744 >UniRef50_Q6KHI4 Topoisomerase IV subunit A n=1 Tax=Mycoplasma mobile RepID=Q6KHI4_MYCMO Length = 858 Score = 634 bits (1636), Expect = e-180, Method: Composition-based stats. Identities = 220/729 (30%), Positives = 366/729 (50%), Gaps = 24/729 (3%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + D +L N Y Y+ Y+I RALP + DGLKPVQRRI+Y+M ELGL + F Sbjct: 6 LKDKFLLQSLDGIMSNRYGVYAKYIIQQRALPDVRDGLKPVQRRILYSMHELGLTSEKPF 65 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VGDV+GKYHPHGDS+ YEAMV M+Q + PL+ GN G+ DD AAMRY Sbjct: 66 KKSARVVGDVIGKYHPHGDSSIYEAMVRMSQEWKMNVPLIQMHGNIGSIDDDP-AAAMRY 124 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RLSK S LLLS++ T + NFD + +EP +LPA PN+L+NG GIA G AT+I Sbjct: 125 TEARLSKISSLLLSDIKSDTVSFSLNFDDSEKEPTVLPAFFPNLLVNGARGIAAGFATEI 184 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL EV IA I P ++ L I++GPD+PT I + +GRG + Sbjct: 185 PPHNLGEVIDGIIAKIKNPNIKIETLNTIIKGPDFPTGGIIYGIDGIKEAAF-SGRGRIT 243 Query: 241 MRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 + + ++ +VI+ +P+ V ++++ QI +K + ++++RDE++ + ++ Sbjct: 244 ITSKYEVHKNQIVITEIPYGVVKSKLVRQIDEINLDKNIGGMNEVRDETNRDGIKIVI-- 301 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360 D ++M L T+L+ Y N N+ + P + NL +++ +L + Sbjct: 302 DLEAGADASKIMKFLMQKTELQLYYSYN-NIAIHNNAPVLMNLHDLIQAFLDHVKVIQTN 360 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK----PALMSRFGLTETQAEA 416 ++N+ LEK+ KRL I+EG + D+VIE+IR + K L+ F +E QAE+ Sbjct: 361 KINFELEKLSKRLEIIEGFIKLTEISDQVIEMIRKSEGSKVGVVENLIKIFNFSEIQAES 420 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDR 476 I L+L L+K + + E+ ELE + L+ +L+SE + N L K + + Y R Sbjct: 421 IANLRLYRLSKTDVEEFIKEKQELETRINFLKTLLSSESEFNAELIKIFKDIKKTYATPR 480 Query: 477 RSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNY---KAGDSFKA 533 ++ ++++ +S D++ +E + +S+ G+++ D+ + K D+ Sbjct: 481 KTEIKDQALKLDVSLSDLIQAEETFVGISRDGYIKRFNQKIHDSNEMQTYLLKEDDALIF 540 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGA---TVDHMLME 588 K + ++ + G +I + + + G L TL P V ++ Sbjct: 541 LSKTLTTGKLLIFTNQGNYISIPIFKIAEEKWKNLGIHLNDFATLLPNEFLIKVLYVDDF 600 Query: 589 SDDQKLLMASDAGYGFVCTFNDL-VARNRAGKALITL-PENAHVMPPVVIEDASDMLLAI 646 S D + + + G+G + V+R I + ++ + D D+LL Sbjct: 601 SKDFSITLITKKGFGKKVQLPEFEVSRENKSYPAIKFKKDGDELLNAFITNDRLDILLVN 660 Query: 647 TQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRK 706 T+ + F +D K G K + ++ A + A + + + + Sbjct: 661 TKL-EVYKFSENDF----KTYGIKAAGVKISDNATKFEISAAIAYSQNDTLVFLTESGHA 715 Query: 707 IKLRPEELQ 715 K+ P+++ Sbjct: 716 RKINPKKVD 724 >UniRef50_A5IXX2 Topoisomerase IV subunit A n=2 Tax=Mycoplasma RepID=A5IXX2_MYCAP Length = 861 Score = 629 bits (1624), Expect = e-179, Method: Composition-based stats. Identities = 210/756 (27%), Positives = 375/756 (49%), Gaps = 32/756 (4%) Query: 1 MSDMAERL---ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 57 ++D+ ++ L + + YS YVI RALP + DGLKPVQRRI+Y+M +LGL + Sbjct: 9 LNDLLSKIIQENLDTVVADRFSRYSKYVIQQRALPDVRDGLKPVQRRILYSMYDLGLQNN 68 Query: 58 AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 117 FKKSAR VGDV+GKYHPHGD++ Y+AMV M Q + + LV+ GN G+ DD AA Sbjct: 69 KPFKKSARVVGDVIGKYHPHGDTSIYDAMVRMGQEWKMGHTLVEMHGNVGSIDDDP-AAA 127 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 MRYTE RLS+ + ++ ++ + T + PNFD + +EP ++P +PN+L+NG+TGIA G A Sbjct: 128 MRYTEVRLSEIANYVIGDIRKNTVKFAPNFDDSEKEPVVMPVLIPNLLINGSTGIASGFA 187 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T++PPHNL E+ AAIA + P L +L I+QGPD+PT II I + +E G+G Sbjct: 188 TEMPPHNLNEILDAAIAKVKNPAIELTKLAKIIQGPDFPTGG-IIYGTEGIHEAFERGKG 246 Query: 238 SVRMRAVWKKEDGA----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHEN 293 + + + + + + I+ +P+ V ++++ +I + ++++ + +++D++D Sbjct: 247 RITLASRYNVYTDSKYKYIEITEIPYGVVKSKLVHEIDLIVDSEEVAGLLEVKDQTDRNG 306 Query: 294 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVF 353 L+ + + D + ++N+LF T + Y N N++ + P + +L +L Sbjct: 307 INILITLDK--EADENVIVNYLFLKTQMRIYYNYN-NVVIDNYTPKTLGISALLDAYLKH 363 Query: 354 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----LMSRFGL 409 +D + + + L K RL I+ G L D+VIE+IR + K LMS F Sbjct: 364 VKDIKIKTIEFDLIKHKARLEIVIGFLKVAKITDKVIEVIRKSENSKQGVIDNLMSAFDF 423 Query: 410 TETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADA 469 T QA AI EL+L L+K +E E+ ELE++ Q + +L + N L + Sbjct: 424 TLNQATAIAELRLYKLSKTDEHAFLIEKEELEEKIKQCELLLNDSDEFNKYLIALFKDLK 483 Query: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNY---K 526 +G RR+ ++ + ++++ D++ E V + +S+ G+++ ++ +N K Sbjct: 484 SKFGRARRTSIENEQIKASINQEDLVKEEQVFLGISKFGYIKKVSKKIYESNLINTYGIK 543 Query: 527 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDH 584 D+ S ++ + G + + ++ + G L+ + L G + Sbjct: 544 EDDNILFYDNASSLDKLLLFTNFGNYAYLPVFKVHESKWKEFGTHLSDFVDLTSGEELVS 603 Query: 585 MLMESD---DQKLLMASDAGYGFVCTFNDL-VARNRAGKALITLPENAHVMPPVVIEDAS 640 + SD + + + G G + V+R + L + ++ + + Sbjct: 604 AIKVSDFDSSNYVCLFTKKGQGKKVLLKEFDVSRFSKTFVAMKLKSDDELIGA-KLSNGL 662 Query: 641 DMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI 700 +L IT+ ++ +++P G K + A ++ A V S + I Sbjct: 663 KDVLLITKNNFASLYSENEVPIY----GLKSNGNKACYLANYDELSAFAVVSSNDSVVLI 718 Query: 701 HVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDR 736 + R + E+ KV + +G + R + Sbjct: 719 NANNRAKVVNVSEITKV--SKANKGVALFAKSRTNS 752 >UniRef50_B3PLT5 Topoiosmerase IV subunit A n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PLT5_MYCA5 Length = 949 Score = 628 bits (1619), Expect = e-178, Method: Composition-based stats. Identities = 216/752 (28%), Positives = 372/752 (49%), Gaps = 38/752 (5%) Query: 1 MSDMAERL---ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 57 M ++ E + + + + YS Y+I RA+P DGLKPVQRRI+Y+M L L + Sbjct: 9 MYNLTETIIEKNMVDVMSERFGRYSKYIIQQRAIPDARDGLKPVQRRILYSMYGLKLYNN 68 Query: 58 AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 117 F+KSA+ VG+V+G+YHPHGDS+ YEA+V M+Q + +PL++ GN G+ DD AA Sbjct: 69 QAFRKSAKIVGEVMGRYHPHGDSSIYEALVRMSQEWKSNFPLIEMHGNKGSIDDDP-AAA 127 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 MRYTESRL K SEL+L +L + PNFD T EP +LP+ +PN+L+NG+ GIA G A Sbjct: 128 MRYTESRLEKISELILKDLDRKVVAMAPNFDDTEYEPVVLPSLIPNLLINGSKGIAAGFA 187 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T+IPPHNL EV A I LI P +L++L IVQGPD+PT +I I + +E G+G Sbjct: 188 TEIPPHNLSEVIDATIKLIKNPLISLEELKQIVQGPDFPTGG-VIHGIEGIAQAFETGQG 246 Query: 238 SVRMRAVWKK---EDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDES 289 + + + ++ E+ + I P V ++++ I + +K + V ++RD+S Sbjct: 247 KINISSRYRFVYAENKPSKIIGIEIYETPFGVIKSKLVADIDFLVIDKTINGVKEVRDQS 306 Query: 290 DHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSE 349 + E + + + + + + ++N+L + TDL SY N+ I + P + NL +L Sbjct: 307 NREGIS--IYLELEDEANAEAIINYLMSKTDLRISYNYNMVAI-HENSPKLMNLQMLLFT 363 Query: 350 WLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK----PALMS 405 +L +D + + + L+K RL I++G + DEVI +I+N D K AL Sbjct: 364 YLSHLKDINTKGIEFDLKKYEIRLEIVQGFIKVSEISDEVIRVIKNSDNSKKGVIEALEK 423 Query: 406 RFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKEL 465 FG T QA AI EL+L L+K+++++ + E EL + + + +L + + + + ++L Sbjct: 424 TFGFTNIQATAIAELRLYKLSKMDQLEFQNEAKELAIKIARCKELLENPNEFDKFIIEQL 483 Query: 466 QADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDA---PG 522 + + Y R S + + + ++ + +E LS+ G+++ + G Sbjct: 484 KDIKKEYAKPRFSEISQDKIRTEINTKLLAKNEDFYFFLSKEGYIKRISKKAFSSNGFSG 543 Query: 523 LNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGA 580 K D+ K S ++F + G + ID TL + G ++ + L Sbjct: 544 FKLKDNDAIFYYDKINSLSKLIFFTNLGNYFIIDAHTLKENGWKDIGNHISSLVALENNE 603 Query: 581 TVDHMLMESD---DQKLLMASDAGYGFVCTFNDLVARNRAGKA-LITLPENAHVMPPVVI 636 + ++ + ++ + G + ++ A K I L N + ++ Sbjct: 604 RIIRVMEIESFNTYSRFIILTKKGMAKKVEIQEFDSKQIARKRSCIPLRPNDELCDVRIV 663 Query: 637 EDASDMLLAITQAGRMLMFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVLPPQ 695 + +L + G + + +P+ S K G +I + + + P+ Sbjct: 664 -NKEKLLFILLTGGLYYLIDENVVPEYSLKASGISLIKTD------RDQEIEAFSPISPK 716 Query: 696 STLTIHVGKRKIKLRPEELQKVTGERGRRGTL 727 + + I K + K E K+ G R G + Sbjct: 717 NKVIIMTDKGQFKRTKMETVKLVG-RSSHGKV 747 >UniRef50_O52166 Topoisomerase IV subunit n=2 Tax=Mycoplasma hominis RepID=O52166_MYCHO Length = 933 Score = 625 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 208/698 (29%), Positives = 354/698 (50%), Gaps = 31/698 (4%) Query: 1 MSDMAERL---ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 57 + ++ E + + + + + YS Y+I RA+P DGLKPVQRRI+Y+M L L S Sbjct: 9 IQEVTENIIEKNMADIMSDRFGRYSKYIIQQRAIPDARDGLKPVQRRILYSMWNLHLKNS 68 Query: 58 AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 117 FKKSAR VGDV+G+YHPHGDS+ YEA+V MAQ + +PL++ GN G+ DD AA Sbjct: 69 EPFKKSARIVGDVIGRYHPHGDSSIYEALVRMAQDWKSNFPLIEMHGNKGSIDDDP-AAA 127 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 MRYTESRL K SEL+L +L + PNFD + EP +LPA PN+L+NG GIA G A Sbjct: 128 MRYTESRLEKISELMLKDLDRKVVKMAPNFDDSEYEPIVLPALFPNLLVNGAKGIAAGFA 187 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T+IPPHNL EV A IALI P ++++L +IV+GPD+PT A II EI+K +G+G Sbjct: 188 TEIPPHNLGEVIDATIALIKNPTISIEELSEIVKGPDFPTGA-IINGINEIKKALSSGQG 246 Query: 238 SVRMRAVW--------KKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDES 289 + + + + + + + I +P V ++++ I A +KK+ + ++ D++ Sbjct: 247 RITISSKYHYVYDKKDESKIIGIEIIEIPFGVVKSKLVADIDAIAIDKKISGIKEVLDQT 306 Query: 290 DHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSE 349 D + + + + + D ++ +L T+L SY N+ I + RP + NL L Sbjct: 307 DRNGIS--IFIQLEDGANADAIIAYLMNKTELSISYSYNMVAID-NNRPVILNLYSALIA 363 Query: 350 WLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKP----ALMS 405 +L ++ +NY L+K RL I+EG + DEVI +I+ D K ALM+ Sbjct: 364 YLSHLKEVNINGINYDLKKFKLRLEIVEGFIKVAEISDEVIHLIKESDNSKKGVILALMN 423 Query: 406 RFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKEL 465 +F +E QA AI EL+L L+++++++ + E+ LE + + +L + + N L K+L Sbjct: 424 KFKFSELQATAIAELRLYKLSRMDQIEFQEEKKNLEIQIENCNKLLNDKWEFNQYLIKQL 483 Query: 466 QADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI---DAPG 522 Y R + + +++ K + + +E + +++ G+ + + Sbjct: 484 LEIKNQYSKPRLTEISDQKIDKEIDHKLLTKNEDFYLYITKDGYYKKISLKVYTSNELST 543 Query: 523 LNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGA 580 K D+ K S ++F + G + ID + G+ ++ + L Sbjct: 544 FKLKEEDNVFYFDKVNSLSKILFFTNLGNYFIIDCHLFKDCNWKDLGQHISSIVALESSE 603 Query: 581 TVDHML---MESDDQKLLMASDAGYGFVCTFNDLVARNR-AGKALITLPENAHVMPPVVI 636 + ++ ++ ++ S GY D ++ K ++ ++ + I Sbjct: 604 KIIRVIEITSFNNYANFILMSKLGYAKKVNLRDFENKSSLKTKTCMSFKDDNDELIDAQI 663 Query: 637 EDASDMLLAITQAGRMLMFPVSDLPQL--SKGKGNKII 672 + ML + G + ++L K +G +++ Sbjct: 664 SNDEKMLFILLNNGMYHLVSENELKVGISLKARGIRLL 701 >UniRef50_C5J6X2 Topoisomerase IV subunit A n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J6X2_MYCCR Length = 864 Score = 620 bits (1600), Expect = e-176, Method: Composition-based stats. Identities = 204/704 (28%), Positives = 343/704 (48%), Gaps = 24/704 (3%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + +L ++ Y+ YVI +RA+P + DGLKPVQRRI+Y+M LGL +KK Sbjct: 6 NQIINSSLDNIVAEKFIRYAKYVIQNRAIPDVRDGLKPVQRRILYSMWMLGLKKEKAYKK 65 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SAR VGDV+GKYHPHGDS+ Y+A+V M+Q + PLVD GN G+ DD AAMRYTE Sbjct: 66 SARVVGDVIGKYHPHGDSSIYDALVRMSQEWKINIPLVDMHGNKGSIDDDP-AAAMRYTE 124 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 RL + S L+L L + W PNFD + +EP +LP +PN+L+NG GIA G AT+IPP Sbjct: 125 VRLEEISALMLELLNKNVISWAPNFDDSEKEPTVLPTIVPNLLVNGAIGIASGFATEIPP 184 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HNL EV AIA+I K T +L I+ GPD+PT I+ I + G+G + + Sbjct: 185 HNLSEVIDGAIAMIKNEKITNSELQSIIPGPDFPTGG-IVYDNGGISDAFSKGKGRISLV 243 Query: 243 AVWKKEDGA----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 A ++ + + IS +P+ ++ A ++ QI +K+ + ++ D+SD L+ Sbjct: 244 AKYEIVNKNKDISIQISQIPYGIAKANLIRQIDDIRFEEKVYGIKEVIDQSDRNG--ILI 301 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + ++D V+N+L TD++ Y N I + P + +L E++ +L ++ Sbjct: 302 SIDLEADANVDLVVNYLLQKTDMQIYYSYNSVAIC-NNSPKLVSLSEMIKYYLDHLKNIK 360 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK----PALMSRFGLTETQA 414 + ++Y L K KR I++G L DEVI++IR D K L++ FG T+ QA Sbjct: 361 LKEIDYDLFKSQKRYEIIQGFLKVADITDEVIKVIRASDNSKIGVIKDLIAHFGFTQIQA 420 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 EAI +++L L+K+++ E ELE + + L + L K L+ +G Sbjct: 421 EAIAQMRLYRLSKIDQENFLSESKELENKIELLNNLKNDSTAFKKFLIKTLKQVQNNFGQ 480 Query: 475 DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN---YKAGDSF 531 R++ + +++ + ++ D++ E + ++Q G+ + + L+ K D Sbjct: 481 PRKTQILKKDFSIKINHEDLIKDENIYFGITQQGYYKKISLKNFSLSDLDKYAIKKDDFL 540 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVD---HML 586 K + V + + L + G L ++ + ++ Sbjct: 541 ILLTKLNLKDKIFLVTNKANLVVLAAHQLEETSYKNIGNDLKIEVDFQQDEYIVAQINIS 600 Query: 587 MESDDQKLLMASDAGYGFVCTFNDLVA-RNRAGKALITLPENAHVMPPVVIEDASDMLLA 645 ++ +++ S G + + L R + + L E+ ++ + D + Sbjct: 601 ENKNNSNIILVSKHGLAKRVSLDSLFNLRTKKLTNIFKLKEHDELIGA-YLTDNLANIAI 659 Query: 646 ITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQ 688 I+ R L D+P + G K+ + E + +A Sbjct: 660 ISNLNRSLKVAEIDIPIYGRNSAGVKLATLKKGEQIQLAYPIAD 703 >UniRef50_Q57532 Mle gyrA intein n=207 Tax=cellular organisms RepID=GYRA_MYCLE Length = 1273 Score = 618 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 181/635 (28%), Positives = 314/635 (49%), Gaps = 41/635 (6%) Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RL+ + +L E+ + T D++ N+DG +QEP +LP+R PN+L NG+ GIAVGMAT+I Sbjct: 551 TEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATNI 610 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQL----LDIVQGPDYPTEAEIITSRAEIRKIYENGR 236 PPHNL E+A A ++ + + ++ V+GPD+PT I+ S+ I Y+ GR Sbjct: 611 PPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGSQ-GIADAYKTGR 669 Query: 237 GSVRMRAVWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDH 291 GS+R+R V + E+ ++VI+ LP+QV+ + IA Q+R +L + ++ D+ Sbjct: 670 GSIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSD 729 Query: 292 ENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWL 351 R+VI + + V V+N+L+ T L+ S+ N+ I +DG P L +++ ++ Sbjct: 730 RVGVRIVIEIKRDAV-AKVVLNNLYKHTQLQTSFGANMLSI-VDGVPRTLRLDQMICYYV 787 Query: 352 VFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFG 408 + D + RR YRL K +R HIL GL+ A +DEVI +IR + ++ Sbjct: 788 EHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIARVGVVELLD 847 Query: 409 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 + + QA+AIL+++LR LA LE +I + +++E E L ILA + +++ EL Sbjct: 848 IDDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEIADLGDILAKPERRRGIIRNELTEI 907 Query: 469 AQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS--------AKGHDIDA 520 A+ YGDDRR+ + + +++ D++ E V + +++ G+ + K Sbjct: 908 AEKYGDDRRTRIIAVD--GDVNDEDLIAREEVVVTITETGYAKRTKTDLYRSQKRGGKGV 965 Query: 521 PGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPP 578 G K D + ++ ++F + GR Y LP A +G+ + L P Sbjct: 966 QGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVANLLAFQP 1025 Query: 579 GATVDHML---MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVV 635 + ++ D L++A+ AG D + G I L +N ++ V+ Sbjct: 1026 EERIAQVIQIRSYEDAPYLVLATRAGLVKKSKLTDFDSNRSGGIVAINLRDNDELVGAVL 1085 Query: 636 IEDASDMLLAITQAGRMLMFPVSD--LPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVL 692 D LL ++ G+ + F +D L + + G + + + +D L L V+ Sbjct: 1086 CAADGD-LLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNA------DDRLLSLNVV 1138 Query: 693 PPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTL 727 + L + K E + G RG +G L Sbjct: 1139 REDTYLLVATSGGYAKRTSIEEYPMQG-RGGKGVL 1172 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 58/117 (49%), Positives = 81/117 (69%), Gaps = 1/117 (0%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 E + + + + +Y++Y+M VI+ RALP + DGLKPV RR++YAM + G KS Sbjct: 15 RVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMLDSGFRPDRSHAKS 74 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 AR+V + +G YHPHGD++ Y+ +V MAQP+S RYPLVDGQGN+G+P AAMRY Sbjct: 75 ARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP-GNDPPAAMRY 130 Score = 88.8 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 81/196 (41%), Gaps = 14/196 (7%) Query: 496 PSEPVTIVLSQMGWVRSAKGHDIDAPG------LNYKAGDSFKAAVKGKSNQPVVFVDST 549 P ++ ++ G V+ +K D D+ +N + D AV ++ ++ V + Sbjct: 1039 EDAPYLVLATRAGLVKKSKLTDFDSNRSGGIVAINLRDNDELVGAVLCAADGDLLLVSAN 1098 Query: 550 GRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLMESDDQKLLMASDAGYGFVCT 607 G+S + R G +G + + + + +D LL+A+ GY + Sbjct: 1099 GQSIRFSATD-EALRPMGRATSGVQGMRFNADDRLLSLNVVREDTYLLVATSGGYAKRTS 1157 Query: 608 FNDLVARNRAGKALITLPEN---AHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS 664 + + R GK ++T+ + ++ +V+ D L AIT G ++ + Q Sbjct: 1158 IEEYPMQGRGGKGVLTVMYDRRRGSLVGAIVV-DEDSELYAITSGGGVIRTTARQVRQAG 1216 Query: 665 K-GKGNKIINIPSAEA 679 + KG +++N+ + Sbjct: 1217 RQTKGVRLMNLGEGDT 1232 >UniRef50_Q4A6Z3 Topoisomerase IV subunit A n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A6Z3_MYCS5 Length = 860 Score = 609 bits (1572), Expect = e-173, Method: Composition-based stats. Identities = 195/693 (28%), Positives = 368/693 (53%), Gaps = 28/693 (4%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 ++ + E + YS YVI +RA+P + DGLKPV RRI+Y+M LGL+ KFKKSAR VG Sbjct: 14 SVDKIMEERFETYSKYVISNRAIPDVRDGLKPVHRRILYSMYALGLDFDKKFKKSARIVG 73 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 DV+GKYHPHGD++ Y AM+ +AQ + PL+ GN G+ DD K AAMRYTE +L+K Sbjct: 74 DVIGKYHPHGDTSVYNAMINLAQWWKMNIPLLSMHGNIGSIDDDK-QAAMRYTEVKLAKI 132 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 + ++ ++ + T ++PNFD + EP +LP+ PN+L+NG+ GIA+GMAT++PPHNL E+ Sbjct: 133 ANYIIGDIKKKTVKFIPNFDDSETEPIVLPSMFPNLLVNGSRGIAIGMATEMPPHNLGEI 192 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR---GSVRMRAVW 245 A + I PK + +L + V GPD+PT +I I + ENGR +++ + Sbjct: 193 IDACVYKIKHPKASYSELSNFVLGPDFPTGG-VIKGTKGIAEALENGRNEKNKIKLFCKY 251 Query: 246 KK----EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 + ++ + I+ +P+ V +++ +I ++NK + + +++D SD + L+ + Sbjct: 252 EIYTKGKNKFIEITEIPYGVVKVKLVYEIDLIIQNKLIDGIIEIKDRSDRDGINILITLD 311 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 ++ + + ++N+LF+ T ++ +Y N N++ + P + NL ++S ++ ++ Sbjct: 312 INS--NEESILNYLFSKTQMQITYSYN-NIVIDNNSPTLMNLENLISSYIAHIKNVKTLS 368 Query: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK----PALMSRFGLTETQAEAI 417 LNY L K RL I+ G + +VIE+IR K L+ F T+ QAE+I Sbjct: 369 LNYDLNKAKVRLEIINGFIKVSEITSQVIELIRKTQGSKMGVVNNLIQVFNFTKLQAESI 428 Query: 418 LELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRR 477 EL+L L++ ++ E+ E+++ + ++ +L +E++ NN L E++A + + R+ Sbjct: 429 AELRLYKLSQTDKEIYLKEKVEVKETINIIENLLNNEKEFNNFLINEIKAIKKEFSVPRK 488 Query: 478 SPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN---YKAGDSFKAA 534 + ++E++ + ++ D++ E + + +S+ G+++ ++ K D+ Sbjct: 489 TQIEEKDFEVSYNKLDLVKEEIINVSISKNGFIKRFSDKVLENNEWKNYALKEKDNLVFF 548 Query: 535 VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKL-TLPPGATVDHMLMESD- 590 K + ++ + G + + + + G + + P + ++ SD Sbjct: 549 SKVNTVNFLLCFTNLGNYVIVAIYQIQEVKWKDLGNNINLFASDIRPDEEIVSVIEVSDF 608 Query: 591 --DQKLLMASDAGYGFVCTFNDLVARNRAGK-ALITLPENAHVMPPVVIEDASDMLLAIT 647 + +++ + GY D + K + L E+ +++ + + L+AIT Sbjct: 609 EENLSVMLGTKQGYFKRVMLKDFLVSRFTKKYTAMPLNEDDYLIKA-KLTNLDSYLVAIT 667 Query: 648 QAGRMLMFPVSDLPQLS-KGKGNKIINIPSAEA 679 + + F S++ S K +G+K I + Sbjct: 668 ENSIISKFSESEIMFYSTKARGSKAIYFSVGDK 700 >UniRef50_A2BND1 DNA gyrase/topoisomerase IV, subunit A n=7 Tax=Prochlorococcus marinus RepID=A2BND1_PROMS Length = 813 Score = 607 bits (1566), Expect = e-172, Method: Composition-based stats. Identities = 233/741 (31%), Positives = 392/741 (52%), Gaps = 44/741 (5%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 ++L E + +YL Y+M VI+ RALP DGLKPVQRRI++AM ELGL F+K A Sbjct: 6 FTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRIIFAMYELGLTPDKPFRKCA 65 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 R VGDVLGKYHPHGD A Y+A+V + Q FS +YP +DG GN+G+ D+ AAMRYTE+R Sbjct: 66 RVVGDVLGKYHPHGDQAVYDALVKLVQNFSTKYPTLDGHGNFGSIDNDPP-AAMRYTETR 124 Query: 125 LSKYSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 L+ + L E+G T ++ NFDG+ +EP +LPA+LP +LLNG+TGIAVGMAT+IPPH Sbjct: 125 LAPIAHKGFLEEIGSETVNFSNNFDGSQKEPDVLPAQLPFLLLNGSTGIAVGMATNIPPH 184 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL E+ + L+ + +L +I++GPD+PT E+I SRA I ++Y+ G+GS+ +R Sbjct: 185 NLGEIVDGLVTLVKNKDISDKKLFNIIKGPDFPTGGELIYSRA-IEELYQTGKGSITIRG 243 Query: 244 VWKKED----------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHEN 293 V E+ A++I LP+Q++ A +E++A + K+ + D+RDESD + Sbjct: 244 VINTEEVNLGKGKHKKNAIIIKELPYQINKAGWIEKLAELVNAGKIIGISDIRDESDRDG 303 Query: 294 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVF 353 R+VI + + + + V+++L+ T L+ ++ + + G+P NL + L+ +L F Sbjct: 304 -MRIVIELKKDS-NSELVISNLYKKTTLQTNFGAIF-LALIKGKPVQLNLKKYLNYFLEF 360 Query: 354 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLT 410 R +T+R+R Y L+ L +L I EGL A +I +VI II + + + L+ +F L+ Sbjct: 361 REETIRKRTFYFLKNTLDKLEISEGLSKATKDIKKVIAIIEESENSVQARSKLVEKFFLS 420 Query: 411 ETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQ 470 E QA ++L++ L+ L LE+ +I E L ++++ Q +L + LL +EL + Sbjct: 421 EKQANSVLDMPLKKLTNLEKNQIDNEIKNLAEKKNYFQKLLNERELLLKLLIEELLILKK 480 Query: 471 AYGDDRRSPL-------QEREEAKAMSEHDMLPSEPVTIV-----LSQMGWVRSAKGHDI 518 Y R++ + +E E D + + + L +M K + Sbjct: 481 KYNVIRKTKIIKNLNQNEELETLNNQILEDFINKKTKLYIDNRLYLKRMILSNYKKSFEG 540 Query: 519 DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKL--TL 576 ++ K F ++ + ++ + +TGR + I S+ + L K+ + Sbjct: 541 VNKIIDNKNIQKFICNIEKNT--KLIGITNTGRVFNI---DWESSINKDYKLDNKILGNI 595 Query: 577 PPGATVDHMLMESDDQKLL--MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPV 634 P ++ ++ + + L + SD + V D++ NR+ + L N + Sbjct: 596 HPSEIINFHSIKKETRNYLCILNSDGRFKKVLFDKDMIKSNRSF-TITKLKNNLKTVDS- 653 Query: 635 VIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPP 694 I + S L+ +T GR+ F +S+ + K +K + A+ E ++ Sbjct: 654 FISNESKNLIILTSIGRIFKFNLSNKFLTATSKQSKG--LIIAKLLPTEKIVSCCTFHDG 711 Query: 695 QSTLTIHVGKRKIKLRPEELQ 715 ++ I + + E+ Sbjct: 712 ENIFLISKQGKIFCINSNEIY 732 >UniRef50_Q4A8X9 Topoisomerase IV subunit A n=3 Tax=Mycoplasma hyopneumoniae RepID=Q4A8X9_MYCH7 Length = 846 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 210/730 (28%), Positives = 357/730 (48%), Gaps = 29/730 (3%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 D L + ++ YS YVI RA+P + DGLKPVQRRI+Y+M +LGL S +KK Sbjct: 6 DSVINSRLEKILAEKFIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWQLGLKNSKNYKK 65 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SAR VGDV+GKYHPHGD + Y+A+V +AQ + PLV+ GN G+ DD AAMRYTE Sbjct: 66 SARVVGDVIGKYHPHGDFSIYDALVRLAQEWKMNSPLVEMHGNKGSIDDDPP-AAMRYTE 124 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 RL++ SE LL + + + PNFD + +EP +LPA PN+L+NG GIA G AT+IPP Sbjct: 125 VRLAEISEHLLELISKNVVSFCPNFDDSEKEPTILPAIFPNLLINGAIGIASGFATEIPP 184 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HNL EV A I +I P T++++ I+ GPD+PT I+ ++ I ++ G+G +++ Sbjct: 185 HNLGEVIDATILMIKNPGITIEEISTIILGPDFPTGG-IVYGKSGIFDAFKTGKGKIKIS 243 Query: 243 AVWKKEDGA----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + +K + + I+++P +S + ++E+I + K+ + ++ D+SD + L+ Sbjct: 244 SDYKIFEKNGQNVIEITSIPFGISKSSLIEEIDDIRFDAKIYGIKNVIDQSDQNGVSILI 303 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + + + D ++N+L T L+ Y N I D P + ++ E++ +L R Sbjct: 304 ELEQDG--NPDLIINYLLQKTHLQIHYSYNSVAIC-DNSPKLLSIKEMIFYYLEHLRKIK 360 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----LMSRFGLTETQA 414 N+ L K KRL I+ G L DEVI++IR D K L+ F ++TQA Sbjct: 361 LAEFNFELYKNKKRLEIITGFLKVADITDEVIKVIRASDNSKVGVVSDLIKFFNFSQTQA 420 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 EAI ++L L+K+E+ E LEK + + ++ ++ + + L L + +G Sbjct: 421 EAIASMRLYRLSKIEQQIYLEESKNLEKNIARFKKLIENKDEFDKNLINMLTDFKKHHGK 480 Query: 475 DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI---DAPGLNYKAGDSF 531 R++ + + + +++ +++ E +++ G + + + GD F Sbjct: 481 PRKTKIIDSDIKIKINKDELVKDEFFYFWITKSGLYKKLDIKNSLPDEIEKTQLPNGDFF 540 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTL--PPGATVDHML--- 586 Q VF+ + G + +P + P K+TL P + + Sbjct: 541 IFQGIINQKQKAVFLTNKGEIAILAVHQIPELNLKNSPNNLKITLGIPNNQQILSVFFAD 600 Query: 587 MESDDQKLLMASDAGYGFVCTFNDLVA-RNRAGKALITLPENAHVMPPVVIEDASDMLLA 645 Q L+ S + + L+ + + + + E ++ V +E+ ++ Sbjct: 601 SFESSQFLIFISKFSFAKRMNLDQLMKIKQKKLQNIFRFKEGDELIS-VFLEEKLKNIVL 659 Query: 646 ITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGK 704 IT R L +S++P ++ G KI E + +S I Sbjct: 660 ITTQNRALKMSISEIPIYTRNSTGIKIFRHRKNEFISASQTIES-----SESLAVIDFNS 714 Query: 705 RKIKLRPEEL 714 + K+ E L Sbjct: 715 QFEKINTENL 724 >UniRef50_P75352 DNA topoisomerase 4 subunit A n=2 Tax=Mycoplasma RepID=PARC_MYCPN Length = 789 Score = 606 bits (1562), Expect = e-171, Method: Composition-based stats. Identities = 201/737 (27%), Positives = 356/737 (48%), Gaps = 29/737 (3%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 A+ + ++ Y+ Y+I DRALP + DGLKPVQRRI+Y M ++GL ++ +KKSAR VG Sbjct: 12 AIEDVFAFSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMYQMGLKPTSPYKKSARAVG 71 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 +++GKYHPHGD++ Y+A+V M+Q + + GN G+ D + AAMRYTE+RLS Y Sbjct: 72 EIMGKYHPHGDASIYDAIVRMSQAWKNNLTTISIHGNNGSIDG-DNAAAMRYTEARLSPY 130 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 LL ++ + +V NFD + EP +LP LPN+ +NGT+GIA G AT+I PHN+ E+ Sbjct: 131 GFELLKDIEKQLVPFVNNFDDSEVEPSVLPTLLPNLFINGTSGIAAGYATNIAPHNVGEL 190 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248 I+ P L +L IV+GPD+PT ++ E+ IY+ G+G ++A ++ Sbjct: 191 LDGLSYRIENPDCDLKAILKIVKGPDFPTGG-LVYFEQELANIYQTGKGKFVIQAKYETN 249 Query: 249 ----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 +VI+ +P++ A +++QI + + KL ++ + D SD ++ + Sbjct: 250 TAFGQNQIVITEIPYETVKANIVKQIEELISDNKLSALESVIDSSDRSGIRIIINH--KD 307 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 364 + D++M LF T L+ ++ +N +I + P LL ++L F + + Y Sbjct: 308 FLSADKIMAFLFKHTQLQVNFNLNNTVIA-NRCPVRVGLLAYFDQFLAFAHELIINSAKY 366 Query: 365 RLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEAILELK 421 L KRL I++GL+ A IDE+I +IR ++ + K L+ ++ T QAEAI+ L+ Sbjct: 367 DLALANKRLEIIKGLIKAVSMIDEIIRLIRRATDKQDAKTKLIDKYAFTLNQAEAIVSLR 426 Query: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQ 481 L L + + EQ ELE+ + ++A + N LL+ + + + RR+ + Sbjct: 427 LYQLTNTDIKVLFAEQKELEQTIQTAERLIAKPQARNQLLQAQFFQYKKQFNQPRRAQIV 486 Query: 482 EREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSN 540 E + + + D + + V +++S G + + + +K+ D +++ Sbjct: 487 GLIEKQKVQDSDFIEHKEVGLLISHDGIYFKFEPEQLAKHLVEFKSEQDQLIFGGVVQNS 546 Query: 541 QPVVFVDSTGRSYAIDPIT-LPSARGQ-GEPLTGKLTLPPGATVDHMLMESDD----QKL 594 V S G + L + + + E L K L + + + D Q L Sbjct: 547 DYFFMVTSLGNIITVPIYKTLSNTKTKMNELLAKKPILMEDEKLVLAGIVNPDKMEQQLL 606 Query: 595 LMASDAGYGFVCTFNDLVA-RNRAGKALITLPENAHVMPP-VVIEDASDMLLAITQAGRM 652 ++ S G + ++ + + L E ++ V + ++ ++ + Sbjct: 607 VLTSQCGMVKRVELSKVINTKQIKSSCCMALRERDKLVNAFVQTKGEPKLVCLVSSSNSF 666 Query: 653 LMFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRP 711 F ++P +S KG G K I + + E R + + + + I+ Sbjct: 667 ATFLAEEIPIISNKGIGVKGIKLKAEEKVR-----FAMPLQDNDALVVINSDGGVYNFEV 721 Query: 712 EELQKVTGERGRRGTLM 728 EL R G + Sbjct: 722 VELA--VASRMSVGKKL 736 >UniRef50_C6WIH8 DNA topoisomerase (ATP-hydrolyzing) n=15 Tax=Actinomycetales RepID=C6WIH8_ACTMD Length = 1143 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 225/692 (32%), Positives = 359/692 (51%), Gaps = 40/692 (5%) Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 V + +GKYHPHGD+A Y+AMV +AQ FS PL+DG GN+G+PDD AA RYTE+R+ Sbjct: 401 VVHNCMGKYHPHGDTAIYDAMVRLAQDFSLNTPLIDGHGNFGSPDDGP--AASRYTEARM 458 Query: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 S + LL+ EL + T ++ PN+DG+L EP +LPA PN+L+NGT+GIAVGMAT++ PHNL Sbjct: 459 SGAAMLLVGELDEDTVEFRPNYDGSLTEPAVLPAAFPNLLVNGTSGIAVGMATNMIPHNL 518 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245 EV AA L+ P L++L++ + GPD PT ++ E+RK YE GRG VRMRA Sbjct: 519 GEVVAAARHLVKHPDADLEKLMEFIPGPDLPTGG-MLLGLDEVRKAYETGRGVVRMRATV 577 Query: 246 -------KKEDGAVVISALPHQVSGARVLEQIAAQM-RNKKLPMVDDLRDESDHENPTRL 297 + A+ ++ LP+ V +++E+I ++ ++K+L + D++D +D EN RL Sbjct: 578 TTGPLEGSRGRQAITVTELPYGVGPEKIIEKITDEVNKSKRLTGIADVKDLTDRENGIRL 637 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 VI + V+ ++ L+ T LE+S+ IN N++ +DG+P L +L +L R + Sbjct: 638 VIECKVG-VNPQALLADLYRLTPLEQSFGIN-NLVLVDGQPQTLGLKALLEVFLAHRYEV 695 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQA 414 V RR +R K RLH+++GLL A ++ID+VI++IR N K L+S F L+ETQA Sbjct: 696 VTRRTRFRRRKREDRLHLVDGLLKALIDIDKVIKLIRRSENAQAAKEGLVSTFALSETQA 755 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 IL+ LR L + + +++ GEQ L E +L IL ++ + ++ EL A+ Sbjct: 756 AYILDTPLRRLTRFDSVELEGEQERLRGEIAELSTILDDDKVLRRVVSNELGKVAKDLSA 815 Query: 475 DRRSPLQEREEAKAMSEH-----DMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAG- 528 +RR+ L + + + ++ + +P +VLS G V +A ++G Sbjct: 816 ERRTTLLDGDLKEVLAASRTSGPLEVADDPCQVVLSATGLVARTAAESEEAVEGRKRSGR 875 Query: 529 ---DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-----SAR---GQGEPLTGKLTLP 577 D+ A V + V+ V S GR++ D + LP G P+ + L Sbjct: 876 AKHDAVAATVHTTARGQVLLVTSRGRAFKTDVLPLPVLPQGEGTLSLSGGVPVRELVGLE 935 Query: 578 PGATVDHM--LMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVV 635 G V + L E+D L + + G VC V + +I L V+ Sbjct: 936 AGERVVGIAPLGETDSPGLALGTKQGVVKVCAPEWPVRSDEF--EVIGLKAGDEVVGAQW 993 Query: 636 IEDASDMLLAITQAGRMLMFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVLPP 694 + D + L+ ++ +L + S + +G G I +P + + Sbjct: 994 LADGQEALVFVSSEASLLRYAASLVRPQGLRGGGMAGITLPGEASVVFFGAVRTDDAEHG 1053 Query: 695 QSTLTIHVGKRKIKLRPEELQKVTGERGRRGT 726 + + G + +K+ P +L G R G Sbjct: 1054 EPVVVTSTG-QSVKVTPFDLYPAKG-RATGGV 1083 Score = 99.6 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 40/62 (64%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 +L E++YL Y+ VI RALP DGLKPV RRI+++M+E ++ + KS+R VG Sbjct: 27 SLTTEIEDSYLEYAYSVIHSRALPDARDGLKPVHRRILFSMNEQNHRPTSPYVKSSRVVG 86 Query: 69 DV 70 D Sbjct: 87 DC 88 >UniRef50_C7H694 DNA gyrase subunit A n=11 Tax=Bacteria RepID=C7H694_9FIRM Length = 749 Score = 601 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 215/687 (31%), Positives = 346/687 (50%), Gaps = 24/687 (3%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 + E Y+ Y+M VI+ RALP I DG KP R+++Y M +GL A+ KSA VG Sbjct: 33 PITSTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYGMGLLKGAR-TKSANIVG 90 Query: 69 DVLGKYHPHGDSACYEAMVLMAQ-PFSYRYPLVDGQGNWGAPDDPK-SFAAMRYTESRLS 126 + +PHGD+A Y+ MV M + S P VD +GN+G S AA RYTE++L Sbjct: 91 STM-HLNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAAARYTEAKLE 149 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 E L ++ + T D+VPN+DGT EP +LP P IL N T GIAVGMA +I NL Sbjct: 150 GVCEELFRDIDKETVDFVPNYDGTTTEPTLLPVTFPTILANNTLGIAVGMACNICSFNLA 209 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 E+ +AL+ PK + + PD+ +I+ A++R++YENGRGS+++RA + Sbjct: 210 ELCATTVALMKDPKHDISTTM---PAPDFVGGGQILYDEAQMREVYENGRGSIKVRARYN 266 Query: 247 KE--DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 + + I+ +P + ++++IA ++ K+ + D+RDE+D + + Sbjct: 267 VVPGENMLEITQIPPTTTVEAIMDKIAELVKAGKIKEISDMRDETDLNGLK--LTLDLKR 324 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 364 VD +++M L+ TT LE S+ N N++ + G+P V + EIL EW FR + VRRR Y Sbjct: 325 GVDPEKLMAKLYKTTPLEDSFSCNFNVL-VSGQPRVMGVREILQEWTAFRMECVRRRTYY 383 Query: 365 RLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK---PALMSRFGLTETQAEAILELK 421 L KRLH+L+GL L+ID+ I IIR +E P LM FG+ E QA+ + E+K Sbjct: 384 DLHGKEKRLHLLKGLAAILLDIDKAIHIIRTTEEETEVVPNLMIGFGIDEVQADYVAEIK 443 Query: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQ 481 LRHL + +K GE +LEK+ L ILA ++ ++ EL A+ Y RRS + Sbjct: 444 LRHLNREYILKRTGEIEQLEKDIADLNDILAKPARIRRIIINELNDVAKKYAQPRRSEIL 503 Query: 482 -EREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGL-NYKAGDSFKAAVKGKS 539 + E ++ +E +++P PVT+ ++ G+++ + G K GD V+ ++ Sbjct: 504 YDLPEEESGAEEEVIPDYPVTVFFTREGYLKKIPPQSLRTAGAHKLKEGDEIIHQVETRN 563 Query: 540 NQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHMLMESDDQ-KLLM 596 N +F + Y + L + G L G+L + G + M++ D +L Sbjct: 564 NVEALFFTDKQQVYKVRLNELEDGKVAQMGIYLPGRLGMDEGENILAMVITGDYSGYVLF 623 Query: 597 ASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFP 656 G + + L+ + + ++ L T AGRML+ Sbjct: 624 FFAGGKCAKIPLASYATKQNR-RKLLKAYSDKEPLAKLLFLPEDTELAIRTSAGRMLLVN 682 Query: 657 VSDLPQLSK--GKGNKIINIPSAEAAR 681 + + + +G ++ + + Sbjct: 683 TAQIAAKTTRDSQGVAVVTLKKNQTIA 709 >UniRef50_A7VBP9 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A7VBP9_9CLOT Length = 759 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 214/781 (27%), Positives = 366/781 (46%), Gaps = 75/781 (9%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 MS+ + +Y++YSM VI +RALP + DGLKPVQRRI+Y+++ L + Sbjct: 1 MSEKILNVDYESEMGQSYVDYSMSVITERALPDVRDGLKPVQRRILYSLNGLA-GSDKPH 59 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 +K AR VGD +GKYHPHGDS+ YE +V MAQ + PLVD GN+G+ D AAMRY Sbjct: 60 RKCARIVGDTMGKYHPHGDSSIYEGLVNMAQNWKLPIPLVDPHGNFGSVDGSG-AAAMRY 118 Query: 121 TESRLSKYSELL-LSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 179 TE+R+SKY+E + + +L ++PNFDGT EP LP ++PNIL++G+TGIAVGMAT+ Sbjct: 119 TEARISKYTEDVCMKDLSFFKDQFIPNFDGTETEPTFLPFQVPNILVSGSTGIAVGMATN 178 Query: 180 IPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSV 239 IP HNL EV A + ++ P+ L+ LLD+++GPD+ T I S+ ++ ++YE G G + Sbjct: 179 IPTHNLGEVIDATVMYLNDPEVPLENLLDVMKGPDFATGGIINASKEDLMQVYETGLGRI 238 Query: 240 RMRAVWKKED-----GAVVISALPHQV--SGARVLEQIAAQMRNKKLPMVDDLRDESDHE 292 ++R + D ++ ++ +P + A+ L+ +A RN++LP V D+ D D Sbjct: 239 KVRGKVEIRDIGHGRKSICVTEIPFTMIGGTAKFLDTVAELTRNRELPAVVDIADRGDKN 298 Query: 293 NPTRLVIVPR-SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWL 351 + V + + ++ ++N L+ LE ++ +N+N I DG+P V L ILS + Sbjct: 299 GECLCIDVKKGTTDEEIRNIINILYKKAGLEDTFGVNINCI-YDGKPEVMGLRRILSIYT 357 Query: 352 VFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMS--- 405 F+ + LE ++ I GLL A ID +IEI+R + K LM Sbjct: 358 DFKYGLYNTKYTKLLENQMEVREIKTGLLTAVDCIDLIIEILRGSKKVADAKACLMHGDT 417 Query: 406 -----RFG----------LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450 RF TE QA+AIL ++L+ L LE ++ E + EK + + Sbjct: 418 SNITFRFKGSEADAKFLCFTEKQADAILAMRLQKLIGLEVNALKKELEDAEKLIKKYSKL 477 Query: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510 L S+ M + ++ + Y R++ + + E + V ++L + ++ Sbjct: 478 LESKSNMKKQMIADMLEIKEKYAIPRKTVIADCGEVVVKKAQAV--ETEVAVLLDRFYYI 535 Query: 511 RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARG----- 565 + + D ++ + K K+ + V + Y I + + Sbjct: 536 KVVDANLYDKNKAQI--DKDYRFSFKCKNTERVGVFADNNQMYMIKVADIIKLQAKKNTG 593 Query: 566 --------------QGEPLTGKLTLPPGATVDHMLMESD--DQKLLMASDAGYGFVCTFN 609 +G + + + +M D+ LL + G + N Sbjct: 594 KKGNGSGLIGRLSDKGIQIFEFCNMNGNENILYMCCLEQIIDKNLLFVTKHGQAKLVPGN 653 Query: 610 DLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGN 669 + + + E + + + D ++ + G +S++P KG G Sbjct: 654 NYDVLRK--MIAASKQEED--IIFIHDAEMEDFIVVKSMLGYYARIQISEIPVKGKGAGC 709 Query: 670 -KIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLM 728 +++NI +D + ++ V + + + + +RG +GT + Sbjct: 710 IRLVNIT------DDDEIEEVAVGSTKDSFFVDNTEILFTRIKA------CKRGSKGTKL 757 Query: 729 R 729 R Sbjct: 758 R 758 >UniRef50_A6TSS8 DNA topoisomerase (ATP-hydrolyzing) n=7 Tax=Clostridiaceae RepID=A6TSS8_ALKMQ Length = 930 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 202/708 (28%), Positives = 354/708 (50%), Gaps = 22/708 (3%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + E + + E+ Y+ Y+M VI+ RALP I DG KP R+++Y MS++GL + K Sbjct: 6 NEIEVQEIEDTLESNYMPYAMSVIVSRALPEI-DGFKPSHRKLLYTMSQMGLLTKGR-SK 63 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFS-YRYPLVDGQGNWGAPDDPK-SFAAMRY 120 SA VG + K +PHGD A YE MV M + + VD +GN+G A+ RY Sbjct: 64 SANIVGTTM-KLNPHGDQAIYETMVKMTRGHQGLLHAYVDSKGNFGKVYSRDMREASARY 122 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE++L K+++ + S + + D+V N+D T +EP +LP PNIL+ GIAVGMA I Sbjct: 123 TEAKLEKFTQEIFSNIDKNVVDFVDNYDSTTKEPTLLPTTFPNILVKYNKGIAVGMAEHI 182 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 P NL+EV +A IA + + LL+ ++ PD+ T E+I + ++++Y GRG+ + Sbjct: 183 PSFNLKEVCEATIAYLKDKEI---DLLEYLKAPDFSTGGELIFNEVTMKQVYHTGRGTFK 239 Query: 241 MRAVWK--KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 +R ++ K D A+ I +P+ S ++E I ++ K+ + D+RDE+D + Sbjct: 240 VRGKYRYVKADNAIEIYEIPYTTSIEAIIESIIELVKKGKIKEITDIRDETDKNGLKITI 299 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + R V+ D +M F T LE S+ N N I ++G P V + EIL W+ FR + Sbjct: 300 DLKR--GVNPDDLMVKFFKWTKLEDSFGCNFN-ILINGHPKVMGVKEILDHWIAFRLSCL 356 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK---PALMSRFGLTETQAE 415 +R++ + ++K+ ++L++L+GL LNI EV+++I+N + K LM +F L QAE Sbjct: 357 KRQVQFEIDKLEEKLNLLKGLEKIQLNIHEVVDVIQNTKKDKDVIANLMEQFDLNLAQAE 416 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 I E+KLR L + +K E S +EKE +L +LA E K N ++ +L+ ++AYG Sbjct: 417 YIAEIKLRSLNQELILKKIKEISAIEKELKRLGMVLARESKQNEIIVNDLKRISEAYGIP 476 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGL-NYKAGDSFKAA 534 R++ + E + +SE ++ + + + L+ G+++ + + G K D Sbjct: 477 RKTDIINENEVEVLSEEILIENYNMKLFLTNEGYIKKISLASLRSSGDHKLKDNDYIVQE 536 Query: 535 VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLMESDDQ 592 + G + V+ + Y I L ++ G+ L L L + H++ D Q Sbjct: 537 IDGTNRGEVLLFSNKETVYKIKAYELEDSKASNLGQYLNNVLGLSSDEIILHIVCTEDYQ 596 Query: 593 -KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGR 651 +L + G G + K L + + + ++A + + Sbjct: 597 GHMLFFFENGKGAKIPITSYETKTNR-KQLANAYSGDSPLVYISSIEEDLEMMATSNLNK 655 Query: 652 MLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT 699 L+F ++ ++ + +K + + + + + + P L Sbjct: 656 TLIFNTEEMSPIN-SRNSKGVQVFKCKKGISLKKIKPMDEVSPDEMLN 702 Score = 76.1 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 26/204 (12%), Positives = 65/204 (31%), Gaps = 9/204 (4%) Query: 482 EREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI-DAPGLNYKAGDSFKAAVKGKSN 540 E + +++ + + V L++ G+++ + + K D V+G Sbjct: 694 EVSPDEMLNQKVLDENPRVKFFLTKGGYIKKIPLTTLVEDEEQRLKKDDYIIQEVEGAEE 753 Query: 541 QPVVFVDSTGRSYAIDPITLPSARGQ----GEPLTGKLTLPPGATVDHMLMESDDQ-KLL 595 ++ + Y L + G+ + L L + ++ + + +L Sbjct: 754 GELLLFSNKQILYKTKARELEEDEDKVASIGQRIRSILALDADEDIIYITYTDNYKGHML 813 Query: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 + G G + K L + + L+A + ++L+F Sbjct: 814 FFFENGKGAKIPLESYETKTNR-KQLANAYNGESPLVYISNIQEDIELVATSNINKILIF 872 Query: 656 PVSDLPQLSK--GKGNKIINIPSA 677 + + S KG +I+ Sbjct: 873 NTAQINPKSSRDSKGVQILKSKEG 896 >UniRef50_A3VFM2 DNA topoisomerase IV, A subunit n=11 Tax=Alphaproteobacteria RepID=A3VFM2_9RHOB Length = 856 Score = 553 bits (1425), Expect = e-155, Method: Composition-based stats. Identities = 243/817 (29%), Positives = 392/817 (47%), Gaps = 114/817 (13%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 L + YL Y++ IM+RALP DGLKPV RRI++AM EL LN+ +F+KS++ G Sbjct: 57 PLRRAIGDRYLTYALSTIMNRALPDARDGLKPVHRRILFAMRELRLNSGGRFRKSSKISG 116 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 DV+G YHPHGD+A Y+AM +AQ F+ RYPLVDGQGN+G D + AA RYTE+R++ Sbjct: 117 DVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDG-DNPAASRYTEARMTIV 175 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 +E LL L + D+ N+DGTL+EP +LPA P++L NG GIAVGMAT+IPPHN+ E+ Sbjct: 176 AEALLEGLDEDAVDFRENYDGTLREPVVLPATFPHLLANGAAGIAVGMATNIPPHNISEL 235 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248 A + LI P D LL+ + GPD+PT I+ R I + Y GRGS+R+R+ W+ E Sbjct: 236 VDACLHLIKTPDARDDTLLNYIPGPDFPTGGVIVEPRENIAEAYRTGRGSIRLRSKWEVE 295 Query: 249 D-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 D ++++ +P+QV ++++E++A ++ KK+P++ D+RDES + R+V+ P++ Sbjct: 296 DLGRGQWQIIVTEIPYQVQKSKLIEKLAEVIQTKKVPLLADVRDESADD--VRIVLEPKT 353 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLN 363 V+ + +M LF +DLE + +N+N++ P V +L E+L +L FRR+ + RR Sbjct: 354 RNVEPEMLMGLLFRNSDLEVRFSLNMNVLIDGLTPKVCSLKEVLRAFLDFRREVLIRRSQ 413 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK-- 421 +R+EK+ RL +LEG ++AFLN+D VI+IIR +D+PK ALM + + I Sbjct: 414 HRMEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMYE-DWSRPHQDTIARATNE 472 Query: 422 ---LRHLAKLEEMKI---RGEQSELEKERDQLQGILASERKMNNLLKKE-LQAD-AQAYG 473 + LA ++ + E + + G A+ ++ + E L A A Sbjct: 473 HDYVSPLAGIDVASLELREDETATAPEIITDNTGSGATPKRFVG--RSEGLSDVQADAIL 530 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN-YKAGDSFK 532 + R L+ EE + + E D L E R+ +D+ L + GD K Sbjct: 531 NMRLRSLRRLEELELIRERDALMEE------------RAGLEDLLDSEDLQWGRIGDELK 578 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLP---------------------SARGQGEPLT 571 A K V T + A + +P + G LT Sbjct: 579 DAKKKFGKDYVAGARRTQFAEAAEVPDVPLEAMIEREPVTIVCSQMGWIRAMSGH-VDLT 637 Query: 572 GKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAG---KALITLPENA 628 G K+++ + G + ++L G + ++ LP + Sbjct: 638 RDFKFKDGDGPRFAFHAETTDKIIVFAANGRFYTLGASNLPGGRGMGEPLRLMVDLPNDV 697 Query: 629 HVMPPVVIEDASDMLLAITQAGRMLMFPVSDL---------------------------- 660 ++ + + L+ ++ G + P +D+ Sbjct: 698 EIID-MFVHAPDRKLIVASKGGNGFIVPEADVVAQTKNGKQVLNVSDDVAKLVKPVAGDH 756 Query: 661 ------------------PQLSKGKGNKIINIPSAEAARG----EDGLAQLYVLPPQSTL 698 P++ +GKG ++ SA +G + GL+ L + L Sbjct: 757 VAVVSENRKLLVFPIAELPEMGRGKGVRLQKYGSARGRQGTLDLDGGLSDLTTFDLATGL 816 Query: 699 TI-HVGKRKIKLRPEELQKVTGERGRRGTLMR-GLQR 733 + G R ++ G+R G + G + Sbjct: 817 SWAATGDRT--RTEVDMSPWIGKRAGVGKMPPHGFPK 851 >UniRef50_B1BBK7 DNA topoisomerase n=5 Tax=root RepID=B1BBK7_CLOBO Length = 1417 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 179/735 (24%), Positives = 334/735 (45%), Gaps = 33/735 (4%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 D + + + YL Y++ VI +RA+ I DG KP R++++ + E L K K Sbjct: 665 DNEQEKDIVKVLNENYLPYAIEVIKERAIISI-DGFKPAHRKLLWTLHESNLYN--KRTK 721 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK-SFAAMRYT 121 SA VG + + HGD + YE +V MAQ + YP V+G+GN+G A MRYT Sbjct: 722 SAHIVGSNMS-LNVHGDGSIYETLVRMAQKDTLLYPYVNGKGNFGQHTSKSLQNAHMRYT 780 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+ S ++ + + D+VPNFDG +EP +LP PN+L+N GIAVGMA+ P Sbjct: 781 EAGASNINKEFFHGINKNAVDFVPNFDGEKEEPILLPTTFPNVLVNANKGIAVGMASATP 840 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 NL+EV IA I + + PD+ T I+ ++ +IYE G+GSV + Sbjct: 841 SFNLKEVCDLTIAYIKDTNIVVSD---YLLCPDFATGGFIVRDVDKLNQIYETGQGSVTL 897 Query: 242 RAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKK---LPMVDDLRDESDHENPTRLV 298 RA ++ +D ++++ +P+ + +++ I R K + + ++ D +D + + + Sbjct: 898 RAKYEVKDNEIIVTEIPYTTNRESIVKDIKTLCRESKDNIIRNITNVIDSTDRKGMSITI 957 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + + +++ +M L+A T L+ SY +N+N++ LD P V ++ IL EWL FRR + Sbjct: 958 KIKK--NTNIELLMEKLYANTKLQDSYSLNMNIVCLDKIPRVLSIKRILDEWLKFRRMCI 1015 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQAE 415 R NY + +LH+L + +ID ++ I RN D+ L F + + QAE Sbjct: 1016 SRVSNYDKKDKEHKLHLLNAFKIILTDIDALVHITRNAIDDDDMIKQLQLYFKIDQEQAE 1075 Query: 416 AILELKLRHLAKLEEMKI-RGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 + +KL+ L K ++I + + L++E L+ I E ++NN++ ++LQ Y Sbjct: 1076 YVSNIKLKKLNKNNIIEITEQQITALQQEISDLKNIQNDETRINNIIIQQLQNIRDKYKI 1135 Query: 475 DRRSPLQEREEAKAMSEHDM-LPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKA 533 R++ + E+ +++ D+ + T+VL++ +++ + + K D Sbjct: 1136 PRKTEIINVEDIPSVTLEDIKIEDFNPTLVLTEQQYIKKNRVF---SQSQKLKDDDKILQ 1192 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLT--LPPGATVDHMLMES 589 + + ++ + G L + G+ L L L V ++ Sbjct: 1193 FHQCNNKDDLLLFTNKGNVLIRKVYELDEHKPSTYGDFLPNLLGEHLENDEKVIYISTTK 1252 Query: 590 DDQ-KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQ 648 + + ++ + G + + ++ ++ VI D +L ++Q Sbjct: 1253 NYKGSVITVFENGNVARIDLKQYKTKQNRQVPMDAYNTDSKLVSISVITD-DTNILLVSQ 1311 Query: 649 AGRMLMFPVSDLPQL--SKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRK 706 G+ L+ S + +G + I + + + + I K K Sbjct: 1312 EGKALIINTSQIRPTKSRNTQGVAGMKID----TEHNKVIGSIIGVTVEDNFDIKTEKSK 1367 Query: 707 IKLRPEELQKVTGER 721 K + G++ Sbjct: 1368 SKFIMLDDIAPNGKQ 1382 >UniRef50_B9SK06 DNA gyrase subunit A, chloroplast/mitochondrial, putative n=5 Tax=Magnoliophyta RepID=B9SK06_RICCO Length = 540 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 181/397 (45%), Positives = 251/397 (63%), Gaps = 14/397 (3%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 LH+ AY+ Y+M V++ RALP + DGLKPV RRI++AM ELGL++ FKK AR Sbjct: 111 HTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKCARV 170 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VG+VLGK+HPHGDSA Y+A+V MAQ FS R PL+ G GN+G+ D AAMRYTE RL Sbjct: 171 VGEVLGKFHPHGDSAVYDALVRMAQDFSLRSPLIQGHGNFGSIDADPP-AAMRYTECRLE 229 Query: 127 KYSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 +E LL++L T D+VPNFD + +EP +LPARLP +LLNG++GIAVGMAT+IPPHNL Sbjct: 230 ALTEAVLLADLELDTVDFVPNFDDSQKEPSLLPARLPTLLLNGSSGIAVGMATNIPPHNL 289 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245 E+ ALI P+ TL +LL+ + GPD+PT I+ I + Y GRG + +R Sbjct: 290 GELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIM-GNLGILEAYRTGRGRIIVRGKT 348 Query: 246 KKE-------DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + E AV+I +P+Q + A ++E+IA + NK L V D+RDESD ++ Sbjct: 349 EVESLDSKTKRTAVIIKEIPYQTNKASLVEKIAELVENKNLDGVSDIRDESDRSGMRIVI 408 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 V R + D V+N+L+ T L+ S+ N+ I LDG+P L ++L FR V Sbjct: 409 EVKRGS--DPSIVLNNLYRLTPLQSSFSCNMVGI-LDGQPKQMGLKDLLQASY-FRCSVV 464 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRN 395 RR ++L + +R HI+EG+++ N+D VI II+ Sbjct: 465 ERRARFKLLQAQERRHIVEGIVIGLDNLDGVIRIIKE 501 >UniRef50_A7AVY4 DNA gyrase A subunit, putative n=5 Tax=cellular organisms RepID=A7AVY4_BABBO Length = 1051 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 228/836 (27%), Positives = 386/836 (46%), Gaps = 112/836 (13%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 + L L + +++ Y++ +I+ RALP DGLK V RRI++AM + L AS ++K A Sbjct: 98 VQDLELCDELSQSFMKYALSIILGRALPDARDGLKIVHRRILWAMQVMKLGASTPYRKCA 157 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 + VGDVLGKYHPH D + Y+A+ ++Q F R PLVDG GN+G+ DDP AAMRYTE R Sbjct: 158 KVVGDVLGKYHPHSDKSVYDALCRLSQLFMMRVPLVDGHGNFGSTDDPP--AAMRYTECR 215 Query: 125 LSKYSE-LLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 LS +SE LLL+E+G+ T D +PNFD T EP +LP+++P +L+NG++GIAVG+AT+IPPH Sbjct: 216 LSPFSEKLLLAEMGKNTVDMLPNFDSTEMEPTVLPSKVPLLLINGSSGIAVGLATNIPPH 275 Query: 184 NLREVAQAAIALIDQ-PKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 N E+ +AA + ++LL+IV+GPD+PT I+TS +RKIY G+GS+ ++ Sbjct: 276 NPEEILKAASLMAKNHGNVDTEELLNIVRGPDFPTGGHIVTSIDALRKIYTTGKGSIMLQ 335 Query: 243 AVWKKEDG-------------------------------AVVISALPHQVSGARVLEQIA 271 A + E+ ++++ LP+ V + V+ I+ Sbjct: 336 AKYIYEERIKPRNSKRESDVVVNTYSDPSHLSFTSGSRVSIIVKELPYNVRLSDVMLAIS 395 Query: 272 AQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN---RVDMDQVMNHLFATTDLEKSYRIN 328 + L + DLRDESD RLVI + + ++++++M L + L ++ N Sbjct: 396 KAVETGALRGISDLRDESDR-GGLRLVIELKKHITTHLEVEEIMQKLKKMSGLCSFFKCN 454 Query: 329 LNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNID 387 + G +P +L L WL FR TVR+R+ + E+ +RL+I++G +AF ID Sbjct: 455 FIALDSSGTKPVRLSLYSALKIWLEFRVQTVRKRIERQREQAKERLNIVKGFAIAFNKID 514 Query: 388 EVIEIIRNEDEPKPALM----SRF-GLTETQAEAILELKLRHLAKLEEMKIRGEQSELEK 442 +++ ++RN A+ R+ GL QA A+L + L L+++E KI E+ EL + Sbjct: 515 DIVHMVRNSSSSAEAMRMLSEKRYGGLNAEQASAVLRMSLSQLSRIERDKIDLEEKELSE 574 Query: 443 ERDQLQGILASERKMNNLLKKELQADA----QAYGDDRR---------SPLQEREEAKAM 489 + IL E + +L+ EL+ + Y R + L + + A+ Sbjct: 575 SIKRYNHILGDESHIYSLIYSELEHIRQNPEKHYTVRHRCTTLSVSGHTSLGDGDVAQDY 634 Query: 490 SEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQP--VVFVD 547 E +S + PG K + + ++ ++ Sbjct: 635 PPELGGNDEEFVDSISATIAEDHIANEPGNDPGDLVKQNPDLEGH---NPHDEPSLIVMN 691 Query: 548 STGRSYAIDPIT----------LPSARGQGEPLTGKLTLPPGA------TVDHMLME--- 588 + G I +PS+R Q +P G+ ++ G + ++ Sbjct: 692 NYGLMQRIKLDNSFFRSQKSRYIPSSRLQ-QPYQGQYSIGEGENEDVAPEITQSELQLHY 750 Query: 589 ---SDDQKLLMASDAGYGFVCTFNDLVARNRA----GKALITLPENAHVMPP-------- 633 +M S G FV + L N+ + + PEN Sbjct: 751 GVCRPGDSCMMISKDGTCFVLPVSALRLCNKGYSIWKQVKLKSPENVEYFTVTSKLLFSQ 810 Query: 634 ------------VVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAAR 681 +++++ + L+ I G++ + P K N +I + Sbjct: 811 DQNSGVSNCMYKLIMDETTSYLVLIFTDGQVGIISTKHFPSGHLYK-NPLIRLRLWNNKE 869 Query: 682 GEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRV 737 + + ++ P + +++R +L RG+ + L+ D+V Sbjct: 870 LKP-IFAMFCCPDDDIFVGTLRGYSLRVRLNDLLGGMEHRGKTRKKLIKLKENDKV 924 Score = 53.3 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 77/236 (32%), Gaps = 33/236 (13%) Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGA-TVDHMLMESDDQ 592 + ++ +V + + G+ I PS PL + D Sbjct: 823 LIMDETTSYLVLIFTDGQVGIISTKHFPSGHLYKNPLIRLRLWNNKELKPIFAMFCCPDD 882 Query: 593 KLLMASDAGYGFVCTFNDLVA----RNRAGKALITLPENAHVMPPVVIED---------- 638 + + + GY NDL+ R + K LI L EN V ++E Sbjct: 883 DIFVGTLRGYSLRVRLNDLLGGMEHRGKTRKKLIKLKENDKVTCGAILESLSNVENDAKE 942 Query: 639 -------ASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYV 691 + LL +++ GR + +S+L + G NI +++ +GL V Sbjct: 943 ICRFENYDNRHLLLLSEHGRAKLLHISELQL--RRHGGYGYNIT-RQSSSTIEGLYAATV 999 Query: 692 LPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGL----QRIDRVEIDSPR 743 + + + + + T R MR + DR++ SP Sbjct: 1000 VDTDDDILLVSKDGLLARK----DPFTLPVASRHQKMRKFWTRMRAPDRLQYMSPV 1051 >UniRef50_UPI0001976864 DNA gyrase/topoisomerase IV, subunit A n=1 Tax=Bacillus subtilis subsp. subtilis str. NCIB 3610 RepID=UPI0001976864 Length = 664 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 173/613 (28%), Positives = 313/613 (51%), Gaps = 25/613 (4%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 + + EN + YS Y+++DRALP + DGLKPV RRI+Y+M L + KF KSA G Sbjct: 7 NIEQIIENNMMEYSAYILLDRALPDLRDGLKPVHRRILYSMY---LQKAFKFTKSANVAG 63 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKS-FAAMRYTESRLSK 127 V+ K HPHG + Y +MV M Q + P+++G+GN+G AA RY+E +LS+ Sbjct: 64 QVM-KLHPHG--SSYGSMVGMVQKDRHIIPMLEGKGNFGQYTSRDLMPAADRYSEVKLSE 120 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 S ++ + D++ N+DGT++ P++LP + P+IL +GI VG ++ IP NL+E Sbjct: 121 ISIDMMQNFDKNVVDFIDNYDGTMKMPEVLPVKFPSILAYSNSGIGVGFSSSIPSFNLKE 180 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 + +A + I+ + T V PD+ T I+ R++ E GRG+V++R + Sbjct: 181 LTEAIVKYIETGEKT-------VLVPDFATGGLIVKEDNVFRQLNEEGRGTVKIRGKAEI 233 Query: 248 EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVD 307 + I+ +P+ + ++E+I + KL V D++D + + L+ + D Sbjct: 234 VKNEIHITEIPYSTTREAIIEKIVELNKAGKLKEVTDVKDLTGLKGM--LITITARRNTD 291 Query: 308 MDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367 M+ ++ L+ T L+ ++ N+NM+ +D P V + + + +WL +R ++R L++ +E Sbjct: 292 MNVLLEKLYKFTPLQSTFSANMNML-VDDLPKVLGVWQTIDKWLEWRTTCIKRGLSHDIE 350 Query: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNE--DEPKPALMSRFGLTETQAEAILELKLRHL 425 + ++LH+L+GL L+IDE IEIIR D+ +P L FG+ QA+ + +KLR++ Sbjct: 351 TMTRKLHLLQGLEKVLLDIDEAIEIIRRSSQDQIEPNLQKHFGIDFEQAKEVANMKLRNI 410 Query: 426 AKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREE 485 + +K + + EK + + I+ S+ K+N ++ K L + YG +RR+ + E E Sbjct: 411 NREYIIKKIEDIDKFEKTIENYKMIVKSQDKINQIIIKGLNETKEKYGKERRTKIVELTE 470 Query: 486 AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVF 545 K + + +P+ VTI L++ G+ KG+ N K GD + ++ ++ Sbjct: 471 VKPVRLVEEVPNYAVTIYLTKEGYCYKFKGN----QEPNLKPGDEVLKVFETENKAEILI 526 Query: 546 VDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYG 603 S + ++ + R G L + V + +++S + ++ A Sbjct: 527 FGSDRVCHKVELKDIDETRANALGTYLPNMIRDKNITIVSYSILDSTHKFIIAAYSNNRI 586 Query: 604 FVCTFNDLVARNR 616 Sbjct: 587 AKINLEAFQGNRT 599 >UniRef50_C0QRN3 DNA gyrase subunit A n=9 Tax=cellular organisms RepID=C0QRN3_PERMH Length = 1217 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 180/645 (27%), Positives = 328/645 (50%), Gaps = 43/645 (6%) Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RL+K + +L+++ + T D NFD +L EP++LPA+ PN++ NG +GIAVG++T+I Sbjct: 534 TEARLTKLAMEMLADIDKNTVDMKENFDASLMEPEVLPAKFPNLICNGASGIAVGLSTNI 593 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHN EVA+A L + P T+++L ++GPD+PT +IT EI KIY +GRGSV Sbjct: 594 PPHNFSEVAEALKYLAEFPNATVEELCQFIKGPDFPTGGILITPFEEIVKIYTDGRGSVT 653 Query: 241 MRAVWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 ++ + E ++I +P+QV+ ++++IA +R + + DLRDESD + Sbjct: 654 VKGKARIERLPGNRHRIIIYEIPYQVNKVELIKRIAELVRKGQEKGISDLRDESDRDGIR 713 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 +V + R D ++V+ L+ T L+KS INL ++ + +P +L +L E++ R Sbjct: 714 IVVELKR--EADPEKVLKKLYRRTQLQKSIPINLTVL-VGKQPKTVDLKGLLQEFIKHRV 770 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTET 412 D + RR + LEK RLHI+EGLL A N D VI+I+R+ + + L+ F L++T Sbjct: 771 DVITRRTLFDLEKAENRLHIVEGLLKALENADRVIDIVRSSKDVSSARSQLVEEFELSDT 830 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QA+AIL+++L LE K+ E +L + ++ Q IL+SE + + +E+ + + Sbjct: 831 QAQAILDMRLSRFTALEGDKLYQEADDLRLKIEEYQRILSSEEEKIRVFIEEIDELLEKF 890 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKG---------HDIDAPGL 523 GD+R++ + E +EA E + + ++ S R ++ Sbjct: 891 GDERKTVIVEEKEAGLTFEEHYI----LAVLSSGRILNRRIDDDADKKDIFQKVMNEVVS 946 Query: 524 NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVD 583 + K G+ + + +S+ P+ F+ G++Y LP G+ + + G V Sbjct: 947 SVKPGEKLISVQEVESSIPIAFITDKGKAYWSLVADLPKGEGR-------INIDEGEIVG 999 Query: 584 HMLM-ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM 642 E ++ +L + + G ++ D+ +++ ++I L E+ V+ +D + Sbjct: 1000 TAFKGEGEEDRLFILTKNGIIKRMSYEDIFYKSQN-HSIIPLAEDDCVVTAFA-DDHPSL 1057 Query: 643 LLAITQAGRMLMFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 + T+ G +L+F + + K KG + I++ + G + +T+ Sbjct: 1058 IGVYTRKGDLLLFERNQVRVTGDKAKGVEAIDLDEGDTVAG-----GFLINSEDLIMTVT 1112 Query: 702 VGKRKIKLRPEELQKVTG---ERGRRGTLMRGLQRIDRVEIDSPR 743 +R EE G +R ++G + L + D + + P Sbjct: 1113 KNGYTKLVRKEEFFTKEGKVKKRAQKGLMAVKLGKDDFLSVAVPV 1157 Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 69/120 (57%), Positives = 94/120 (78%), Gaps = 2/120 (1%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 MS++ ++ + E ++AYL+Y+M VI+ RA+P + DGLKPVQRRI+YAM+ELGL + + Sbjct: 1 MSEIIKQ-PIEEEVKSAYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMNELGLYPNKPY 59 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VG+VLGKYHPHGD++ Y+A+V MAQ F+ RYPL+ GQGN+G+ D AAMRY Sbjct: 60 KKSARVVGEVLGKYHPHGDTSVYDALVRMAQDFTLRYPLIQGQGNFGSIDGDPP-AAMRY 118 Score = 41.8 bits (97), Expect = 0.097, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 36/110 (32%), Gaps = 17/110 (15%) Query: 481 QEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKA------------- 527 + +E ++ ++ SE + + +++ G+ + + + K Sbjct: 1088 IDLDEGDTVAGGFLINSEDLIMTVTKNGYTKLVRKEEFFTKEGKVKKRAQKGLMAVKLGK 1147 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPIT----LPSARGQGEPLTGK 573 D AV + ++ V F GR + + G+P+ Sbjct: 1148 DDFLSVAVPVELDETVYFSTEKGRVLKLIVDQKRIPVAKRTAMGDPVLKI 1197 >UniRef50_A4T3N2 DNA gyrase/topoisomerase IV, subunit A n=6 Tax=Mycobacterium RepID=A4T3N2_MYCGI Length = 716 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 189/699 (27%), Positives = 311/699 (44%), Gaps = 52/699 (7%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 + E+ + L +++Y + DRA+P DGLKP QRR++Y M E L K +KS++ Sbjct: 16 SADEYWNHYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHESRLLPGNKPQKSSKICS 75 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 V G HPHG ++ Y A LMA F R ++DGQG + AA RYTE RLS Sbjct: 76 AVTGNLHPHGGASMYGAAALMAADFQ-RVKVIDGQGAFPRIQG-DIPAADRYTEMRLSAP 133 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 L +EL V FDG EP +LPA+ P +L NG GIA G AT +P HN REV Sbjct: 134 GAALTAELDSHAVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAEGWATKVPAHNPREV 193 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248 A AL+ P T D+L+ ++ GPD+ A +I +R+ GRG +R + Sbjct: 194 MAACRALLKTPNMTDDRLVKLIPGPDWGCGASVI-GTDGLREYITTGRGLFTVRGTVSVD 252 Query: 249 DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308 +I+ LP V+ V ++I A + + ++ V D+ D +D N R+V+ + Sbjct: 253 GKNCIITELPPGVASGTVQDRIRALVESGEMAGVADMSDLTDRRNGLRIVVTAKRGH-SA 311 Query: 309 DQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEK 368 +Q+ + L A T LE S+ +L + + P ++ E+++ +L R V R YRLEK Sbjct: 312 EQIRDQLLALTPLESSFAASLVALDENRVPRWWSVRELIAAFLSLRDSVVLHRSEYRLEK 371 Query: 369 VLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQAEAILELKLRHL 425 V R H++ GL+ L+ID + IIR D+ + L RF + QA+ +L L+LR L Sbjct: 372 VTARRHLVAGLMTIHLDIDTAVAIIRASDTVDDARLGLQERFAIDAVQADYVLALQLRRL 431 Query: 426 AKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD---RRSPLQE 482 KL+ ++++ E +L+ E L ++++ ++ +EL A+ + RR+ L Sbjct: 432 TKLDVIELQAEAEKLDAEFAALTELVSNPDARRKVIDQELVETAKLFKGPEYDRRTVLDY 491 Query: 483 REEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQP 542 A + + P E ++ D + Sbjct: 492 DATPVAANNSEDGPRE--------------------RKVNAAWRLDDRGVF----SDSHG 527 Query: 543 VVFVDSTGRSYAIDPITLPSARGQGEPLTGK-LTLPPGATVDHML---MESDDQKLLMAS 598 + G + D + G G P + + + P + +L + + L + + Sbjct: 528 TLLSSGLGWAVWTDG-RIKFTTGGGLPFKIRDIPVSPD--ITGLLQSGVLAPGSHLALIT 584 Query: 599 DAGYGFV-----CTFNDLVARNRAGKALITLPENAHVMPPVVIE-DASDMLLAITQAGRM 652 G AG L+ V+ + + + +L+I++ Sbjct: 585 RRGRVLRIDPAAVNPQGAAGNGVAGVKLVADDPEDRVIAALPVSCANGEAILSISEKSWK 644 Query: 653 LMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYV 691 + V+D+P KG+G + +GED L + Sbjct: 645 VT-EVADIPV--KGRGGAGVGFH--PFGKGEDALLSAAI 678 >UniRef50_Q4N468 DNA gyrase subunit A, putative n=2 Tax=Theileria RepID=Q4N468_THEPA Length = 1014 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 171/534 (32%), Positives = 291/534 (54%), Gaps = 53/534 (9%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 E L L+++ +++L Y++ +I+ RALP DGLK V RRI++AM L L+ + +++K A+ Sbjct: 100 EYLKLNDYMCSSFLKYALSIILGRALPDSRDGLKVVHRRIIWAMHMLKLDPNGQYRKCAK 159 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 VGDVLG YHPH D + Y+A+ ++Q F + PL+DG GN+G+ +DP AAMRYTE RL Sbjct: 160 VVGDVLGNYHPHSDKSVYDALCRLSQDFIMKVPLIDGHGNFGSNNDPP--AAMRYTECRL 217 Query: 126 SKYSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 + +S++ +L+++ T D++PNFD T EP +LP RLPNIL+NG++GIAVG+AT+IPPHN Sbjct: 218 TNFSKMIMLNDINFNTIDYIPNFDNTNIEPMVLPCRLPNILINGSSGIAVGLATNIPPHN 277 Query: 185 LREVAQAAIALIDQ---------------------PKTTLDQLLDIVQGPDYPTEAEIIT 223 EV A I I ++++ V GPD+PT I T Sbjct: 278 PTEVINATIQFIKSHLNTTTETTAETRSDTTVDGLKDDKNVEIVNEVMGPDFPTGGVIRT 337 Query: 224 SRAEIRKIYENGRGSVRMRAVWKKEDG----------------------AVVISALPHQV 261 +R +RKIYE+G+G+V +++ + E+ ++VI+ +P+ Sbjct: 338 TREAMRKIYESGKGTVLIQSKFVFEEKFRDVINVYNNFKDIKFKHNSRISIVINQIPYNT 397 Query: 262 SGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR--SNRVDMDQVMNHLFATT 319 ++E I ++N + V+D++DESD +V + R S+ +++ ++M L T Sbjct: 398 RINDIIENINRNIKNNNIIGVNDVKDESDRNGTRIVVELKRNISSVIEIQEIMAKLQRLT 457 Query: 320 DLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGL 379 E +Y+ N + D +P NL IL WL FR ++R+ + L K+ K L I+ Sbjct: 458 --EYNYKCNFITLDQD-KPIRFNLYTILKIWLDFRLKVLKRKYKHLLLKLKKNLDIINAY 514 Query: 380 LVAFLNIDEVIEIIRNEDE-PKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQS 438 ++ +LNI+ +I +N + L F L + Q ++++ L LR L +L ++ + Sbjct: 515 IIIYLNINTIINSFQNHQKGVYKVLKEEFKLNDDQMKSVMRLTLRQLNQLNIDNLKEKSG 574 Query: 439 ELEKERDQLQGILASERKMNNLLKKELQADAQAYGD-DRRSPLQEREEAKAMSE 491 E K+ + + +L ++ + N + +L + + R + + +E Sbjct: 575 EYTKQIEFYENVLNNDTNLYNEIISDLTELKDHFKNIKRNTLIIYTDEGSNFET 628 >UniRef50_A5K033 DNA GyrAse a-subunit, putative n=2 Tax=Plasmodium RepID=A5K033_PLAVI Length = 1263 Score = 444 bits (1142), Expect = e-123, Method: Composition-based stats. Identities = 148/504 (29%), Positives = 261/504 (51%), Gaps = 40/504 (7%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK-FKKSART 66 + + E +L+Y+ ++I++R L DGLK VQRRI+++M E+ A + +KK AR Sbjct: 153 VEICELLSKNFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGAEKRSYKKCARI 212 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VG+V+GKYHPHGD + Y+A+V +AQ L++G GN+G+ + + AAMRYTE+++S Sbjct: 213 VGEVIGKYHPHGDKSVYDALVRLAQRHHNSNVLINGYGNFGSVE--YNAAAMRYTEAKIS 270 Query: 127 KYS-ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 + ++LL E+ + ++V NFDG EPK+ +++P +L+NG +GIAV + ++IP HNL Sbjct: 271 NFCYDVLLDEINEENVEYVRNFDGNEIEPKVFCSKVPLLLINGCSGIAVSILSNIPCHNL 330 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA-- 243 +V I+ + P D L I++GPD+ T II+ E++ +Y GRGS+ +R+ Sbjct: 331 VDVINCTISFLLNPSIREDHLSAIIKGPDFTTGGIIISKPNELQNVYHTGRGSIEIRSNV 390 Query: 244 --VWKKEDGA-----------------------VVISALPHQVSGARVLEQIAAQMRNKK 278 + K+D +VI LP V ++E + + KK Sbjct: 391 FLEYTKDDKQYVTHVNNLANLHPEDIDSRGSKKLVIKNLPPNVKPNELIENMINILNEKK 450 Query: 279 LP---MVDDLRDESDHENPTRLVIVPRSNRV--DMDQVMNHLFATTDLEKSYRINLNMIG 333 ++ +RDES+ E+ R+V+ R N ++ ++ +F T ++ +Y N IG Sbjct: 451 NEHENILQKIRDESEKED-MRIVLELRKNTQVEQINDFLSFIFKYTQMQTTYHCNFVCIG 509 Query: 334 LDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEII 393 +L L W R +R L + + + K LHI++ ++ I E+I + Sbjct: 510 HQNSYTQFSLKSFLQLWCENRIKFIRNNLTIKNKNLQKELHIIDLYILIQKKILEIISFL 569 Query: 394 ---RNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450 +N +E K F L + Q + IL +K++ L ++ + + ++ + + Sbjct: 570 QKNQNIEEIKNFFKKNFQLNDYQIQHILSMKIQKLVNIKNVHFGPHKEKILTRMRDNRDL 629 Query: 451 LASERKMNNLLKKELQADAQAYGD 474 +A ++ L+ +EL YG Sbjct: 630 IADVDRIKRLIIEELAYIKNKYGT 653 Score = 67.6 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 85/214 (39%), Gaps = 17/214 (7%) Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHMLM 587 K ++ ++ ++ DS ++Y +D L ++ +G P+ + ++ M Sbjct: 942 KVKKSILCRNKDRLLLTDSQNKAYVLDVCDLQTSSYDSKGTPINQVVHCSK--SITGMAK 999 Query: 588 ESDDQKLLMA-SDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI 646 + +K L+ S+ G + + + + + G L ++ H + SD + Sbjct: 1000 FEESKKYLIVCSENGKMKIINNDVFLKKKKKGIRLFKNKKDIH----FSYCNFSDNCIVG 1055 Query: 647 TQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLA---QLYVLPPQSTLTIHV 702 T +G ++ FP+S+ K GNK I++ + D L + + + Sbjct: 1056 TASGHIIQFPLSNFKISKKNSLGNKCISLGKNDKVV--DLLTYENDEKSVKKFQIIFLSK 1113 Query: 703 GKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDR 736 G + EL KV RG+ +M+ +R R Sbjct: 1114 GGHGKMVNLGEL-KVQKRRGKGYKIMK-FKRAKR 1145 >UniRef50_B3LCM1 Dna gyrase a-subunit, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3LCM1_PLAKH Length = 1173 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 142/503 (28%), Positives = 262/503 (52%), Gaps = 40/503 (7%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK-FKKSART 66 + + + +L+Y+ ++I++R L DGLK VQRRI+++M E+ A +KK AR Sbjct: 176 VEICDLLSKNFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGAEKSSYKKCARI 235 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VG+V+GKYHPHGD + Y+A+V +AQ L++G GN+G+ + + AAMRYTE+++S Sbjct: 236 VGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLINGYGNFGSVE--YNAAAMRYTEAKVS 293 Query: 127 KYS-ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 + ++LL E+ ++V NFDG EPK+L +++P +L+NG +GIAV + ++IP HNL Sbjct: 294 NFCYDILLDEINDENIEYVRNFDGNEVEPKVLCSKVPLLLINGCSGIAVSILSNIPCHNL 353 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245 +V I+ + D+L I++GPD+ T II+ ++++ +Y+ G+G++ +R+ Sbjct: 354 VDVINCTISFLLDANIRDDELAAIIKGPDFSTGGIIISKASQLQNVYQTGKGNIEIRSNV 413 Query: 246 KKE---------------------------DGAVVISALPHQVSGARVLEQIAAQMRNKK 278 E +VI LP V ++E + + KK Sbjct: 414 FLEYTKNDKVQVIHVNDLPNVNAEDIDTRGSKKLVIKNLPPNVKPNELIENMINILNEKK 473 Query: 279 LP---MVDDLRDESDHENPTRLVIVPRSNRV--DMDQVMNHLFATTDLEKSYRINLNMIG 333 ++ +RDES+ E+ R+V+ R N ++ ++ +F T ++ +Y N IG Sbjct: 474 NEHENILQKIRDESEKED-MRIVLELRKNSQVEQINDFVSFIFKYTQMQITYHCNFVCIG 532 Query: 334 LDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEII 393 +L L W R + +++ L + + + K LHI++ ++ I E+I + Sbjct: 533 HQNSYTQFSLKSFLQLWCENRINFIKKNLTIKNQNLQKELHIIDLYILIQKKILEIISFL 592 Query: 394 ---RNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450 +N +E K F L + Q IL +K++ L ++ + + ++ +Q + + Sbjct: 593 QKNQNIEEIKNFFKENFKLNDYQIHHILSMKIQKLVNIKNVDFCTHKEQILARMEQNRDL 652 Query: 451 LASERKMNNLLKKELQADAQAYG 473 +++ K+ L+ +L YG Sbjct: 653 ISNVDKIKRLIIDQLTYIKNKYG 675 Score = 75.3 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 83/217 (38%), Gaps = 23/217 (10%) Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHMLM 587 K ++ ++ ++ DS ++Y ++ L ++ +G P+ + + M Sbjct: 880 KVKKSILCRNKDKLLLTDSQNKAYILNVYDLQTSSYDSKGTPINQVIHCSKN--ITGMTK 937 Query: 588 ESDDQKLLMA-SDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI 646 +++K L+ S+ G V + + + + G L ++ H + SD + Sbjct: 938 FEENKKYLIVCSENGKMKVINNDVFLKKKKKGIRLFKNKKDIH----FSYCNFSDNCIVG 993 Query: 647 TQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQST------LT 699 T +G ++ FP+++ K GNK IN+ D + L + Sbjct: 994 TASGHIIQFPLANFKISKKNSLGNKCINLGK------NDKVVDLLAYDNDEKNVGNFQII 1047 Query: 700 IHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDR 736 K+ E KV ++G+ +M+ +R R Sbjct: 1048 FLSKGGHGKMINLEELKVQKKKGKGYKIMK-FKRAKR 1083 >UniRef50_Q8I0X3 DNA gyrase subunit A;evidence=inferred from direct assay n=9 Tax=Plasmodium RepID=Q8I0X3_PLAF7 Length = 1222 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 140/502 (27%), Positives = 264/502 (52%), Gaps = 38/502 (7%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK-FKKSART 66 + + E ++L+Y+ ++I++R L DGLK VQRRI+++M E+ K +KK AR Sbjct: 175 VEICEILSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGIDKKGYKKCARI 234 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VG+V+GKYHPHGD + Y+A+V +AQ L+ G GN+G+ + + AAMRYTE+++S Sbjct: 235 VGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLIKGYGNFGSVE--YNAAAMRYTEAKIS 292 Query: 127 KYS-ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 + ++LL E+ +++ NFDG +EPK+L +++P +L+NG +GIAV + + IP HNL Sbjct: 293 SFCYDILLDEINDENVEYIKNFDGNEREPKVLCSKIPLLLINGCSGIAVSILSSIPCHNL 352 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245 +VA I + D+L I++GPD+ T II+ ++ IY +G+G+ +R+ Sbjct: 353 IDVANCCINFLINENIRDDELFHIIKGPDFSTGGIIISKYDILKNIYNSGKGNFEIRSNV 412 Query: 246 KKE---------------------------DGAVVISALPHQVSGARVLEQIAAQMRNKK 278 E ++I LP V ++E I + +KK Sbjct: 413 FFEYIKNDKKVITKHINDLSSIENSDIDKLTKKIIIKNLPPNVKPNELIENIINLLNDKK 472 Query: 279 LP---MVDDLRDESDHENPTRLVIVPRSNRVD-MDQVMNHLFATTDLEKSYRINLNMIGL 334 ++ +RDES+ E+ ++ + + ++++ + +++LF T+++ SY N IG Sbjct: 473 NEHDNILLRIRDESEKEDMRIVLELKKHSQIEQIHNFLSYLFKYTNMQISYHCNFVCIGY 532 Query: 335 DGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEII- 393 + +L + W R ++ + + + K+L+I++ L+ I ++I Sbjct: 533 ENTYTQFSLKSFIKLWCNNRIKFIKTNYEIKNKNLQKQLNIIDLYLIIQNKILDIITFFQ 592 Query: 394 --RNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451 +N ++ + L + F L Q + IL +KL+ L ++ + +++++ + I+ Sbjct: 593 KNQNIEQIQLYLKNNFKLNPEQIKYILSIKLQKLINIKNIDFISQRNKIMHQIKLNDEII 652 Query: 452 ASERKMNNLLKKELQADAQAYG 473 + + + NL+ +EL YG Sbjct: 653 NNVQNIKNLIIQELIYIKNKYG 674 Score = 68.0 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 30/204 (14%), Positives = 74/204 (36%), Gaps = 10/204 (4%) Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITL--PSARGQGEPLTGKLTLPPGATVDHMLM 587 K ++ ++ ++ D+ +++ ++ L S +G P+ + + + Sbjct: 915 KIKKSILVRNRDKILLTDNYNKAFLLNVYDLHLSSYDSKGTPINQII--HSSKNITGITK 972 Query: 588 ESDDQKLLMA-SDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI 646 +++K L+ S+ G V + + R + G L +N + +D + Sbjct: 973 FQENKKYLIVCSENGKMKVINNDVFLKRKKKGIKLFKNKKN----IYFSYCNFNDNCIVG 1028 Query: 647 TQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKR 705 T+ G ++ FP+S K GNK I++ + + Sbjct: 1029 TKNGYIIQFPLSSFKISKKNSLGNKCISLAKNDKVVDLLSYENNEKNLKNYKIIFVTKNG 1088 Query: 706 KIKLRPEELQKVTGERGRRGTLMR 729 K+ K+ ++G+ +M+ Sbjct: 1089 FGKMINLNELKIQKKKGKGHRIMK 1112 >UniRef50_D1N6B5 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Bacteria RepID=D1N6B5_9BACT Length = 877 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 152/655 (23%), Positives = 274/655 (41%), Gaps = 89/655 (13%) Query: 13 FTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLG 72 + +L Y+ YVI DRA+P + DGLKPVQRR+++A+ ++ + K A VG+ + Sbjct: 51 MMDRNFLEYASYVIKDRAIPDVDDGLKPVQRRVLWALYQV---YDGRTHKVANVVGNTM- 106 Query: 73 KYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELL 132 YHPHG+++ +A+V++A + + QGN+G AA RY E LS + Sbjct: 107 HYHPHGNASIEDALVVLA----NKEYYITRQGNFGNILTGSPAAAGRYIECSLSPLGHEV 162 Query: 133 LSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAA 192 L ++V +DG EP LPA++P++L+ G+ GIAVGMAT I PHN E+ +A Sbjct: 163 L--FNNDITEFVDTYDGRGVEPVTLPAKVPSLLMLGSDGIAVGMATKIMPHNFNELLEAE 220 Query: 193 IALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDGAV 252 IA++ + L PD+ + Y +G G + +RA + + Sbjct: 221 IAVLRGEEFEL--------YPDFQQGGLMDVRE------YNDGNGKITLRAKIEIVGRDL 266 Query: 253 VISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVM 312 +I +P S ++ I K+ + + D + + ++V + D ++ M Sbjct: 267 IIREIPATTSTETLVASIEKAAEKNKIK-ISSVNDYTTDKVEIKVV---PTRGYDPEKTM 322 Query: 313 NHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKR 372 L+ TD S +N+ +I + RP ++ E+L + ++R L L K Sbjct: 323 QGLYMYTDCSVSISVNMTVI-RENRPVQMSVSEVLRRNADKLLEYLKRELEIDLAKQEDL 381 Query: 373 LHILEGLLVAFLN-IDEVIEIIRNEDE----------PKPALMSRFGLTETQAEAILELK 421 H + F N I + IE ++E E P L+ R +T+ + +L L Sbjct: 382 FHAKTLAQIFFENRIYKKIEECKSEKEEYTEVHAGLAPFRHLLRR-DVTDQDIDKLLALP 440 Query: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD--DRRSP 479 +R +++ + K + E +E+ + ++++ L S + L+ YG RR+ Sbjct: 441 VRRISRFDIEKNQRELAEVLAKMEEIKKNLGS---LKKYAINYLRKLLDKYGKDFPRRTE 497 Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKS 539 ++ E+ L + V GW R G + K+ D + Sbjct: 498 IEHFEKID--RREAALNNIKV-------GWDRKN-----GYVGTSIKSDD----ILACNE 539 Query: 540 NQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASD 599 + V+ +G + I LP + + D +K A++ Sbjct: 540 FDRFLCVEKSG---SYKVIALPPEK------------------LFIGKLYDFRKYDAATE 578 Query: 600 AGYGFVCTFNDLVARNRAGKALITLPENAHVMPP----VVIEDASDMLLAITQAG 650 G + T + R L + ++ P ++ +D + +T AG Sbjct: 579 FGVIYRETKSGKYYGKRTAIGGFILDKEYNLCPVGCKLELLTPRADAVYMLTVAG 633 >UniRef50_C9RLW5 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLW5_FIBSS Length = 846 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 149/649 (22%), Positives = 278/649 (42%), Gaps = 75/649 (11%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 L + +L+Y+ YVI+DRA+P+ DGLKPVQRRI+++M E N +++K A VG Sbjct: 18 LERLYDGWFLDYASYVILDRAVPYFEDGLKPVQRRILHSMFE---NHDGRYQKVATIVGR 74 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 + YHPHGD++ +A+V + Q L+D QGNWG P AA RY E RL+ ++ Sbjct: 75 TM-AYHPHGDASIGDALVGLGQKN----LLIDTQGNWGNPYTGDRAAAPRYIEGRLTPFA 129 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 ++ T +W+P++DG +EP LP + P +L G GIAVG++T I PHN RE+ Sbjct: 130 VDVV--FNPETTEWIPSYDGRSEEPVTLPVKFPLLLAQGVDGIAVGLSTSILPHNFRELC 187 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR--GSVRMRAVWKK 247 +A+IA + K TL PD+ T I S Y +G+ G V++RA +K Sbjct: 188 EASIACLRGKKFTL--------YPDFFTGGIIDVSD------YNDGQRGGKVKVRAKIEK 233 Query: 248 -EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRV 306 ++ + I +P+ + ++E I K+ ++ D+ + ++V Sbjct: 234 VDNKTLAIREIPYGTTTVSLIESIVKANDKGKIK----IKHVDDNTSQGVEILVHLQPGT 289 Query: 307 DMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRL 366 D ++ L+A TD EKS + +D P + +IL + L L Sbjct: 290 DPQVAIDALYAFTDCEKSLSP-CTCVIIDKHPKFVGVSDILKLNTEHTVKLLEWELANEL 348 Query: 367 EKVLKRLHILEGLLVAFL-----------NIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415 + + + H+ + + +++I ++R P + R +T+ + Sbjct: 349 KHLEDKWHMTTLEKIFIEKEVYEVIKKAKDREQIIRLVREGLTPYLKRLHRQTVTDEEIG 408 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY--G 473 ++E+ +R ++ + K ELE+ + + ++ + + + + Y G Sbjct: 409 KLIEIPIRRISHYDREKADQLLQELEENIAKCK---YNQEHIIDYAVNHFKNILKKYGEG 465 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKA 533 +RR+ + E K + H L ++ + +V +G G K + Sbjct: 466 KERRTQI--AEFGKVNAVHVALANQKL--------YVNRKEGF----VGTGMKKE---EY 508 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHMLMESDD 591 ++ + G + + + G+ L K + +++ + Sbjct: 509 LFDVSEYDDLIVFKADG---SFKVVKVSDKDFVGKDIILVEKFNKDDERHIYNVIHQDGK 565 Query: 592 QKLLMASDAGYGFVCTFND-LVARNRAGKALI----TLPENAHVMPPVV 635 G V D + +N+ G ++ + A V+ ++ Sbjct: 566 DGYAYIKRFNVGGVTRDKDYYMGKNKPGSKILYMSSNMNGEAEVVEVIL 614 >UniRef50_D0HVU0 Topoisomerase IV subunit A n=3 Tax=Vibrio RepID=D0HVU0_VIBCH Length = 381 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 227/381 (59%), Positives = 298/381 (78%), Gaps = 4/381 (1%) Query: 376 LEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRG 435 ++GLL+A+LN+DEVIEIIRNED+PK LM+RF LT+ QA+AIL+ KLRHLAKLEEMKIRG Sbjct: 1 MQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDIQADAILDTKLRHLAKLEEMKIRG 60 Query: 436 EQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDML 495 EQ ELEKER +L+ +L SER++NNLLKKE++ADA +GDDRRSPL EREEAKA++E D++ Sbjct: 61 EQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLM 120 Query: 496 PSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAI 555 PSE +T+VLS+ GW+R AKGHD+D LNYKAGD++ GKSNQ VF+ S GRSY++ Sbjct: 121 PSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYSL 180 Query: 556 DPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARN 615 + TLPSARGQGEP+TG+L + G T+ ++M +DQ L+ SDAGYGFVC +DL+++N Sbjct: 181 ESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKN 240 Query: 616 RAGKALITLPENAHVMPPVVIED-ASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINI 674 R+GKALI LPEN+ VM P VI D +D +LAIT GRML+FP+ DLPQLSKGKGNKIINI Sbjct: 241 RSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNKIINI 300 Query: 675 PSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLM-RGLQR 733 P+A+A E+ L+ L VLP +++T++ GKRK+ L+ +L GERGRRG L+ RGLQR Sbjct: 301 PAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDNFRGERGRRGALLPRGLQR 360 Query: 734 IDRVEIDSP--RRASSGDSEE 752 + +EI++ ++ +E Sbjct: 361 VTAIEIETSAEPESTPHSEDE 381 >UniRef50_B1ZME1 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Opitutaceae RepID=B1ZME1_OPITP Length = 708 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 164/709 (23%), Positives = 289/709 (40%), Gaps = 85/709 (11%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 E L N +L+Y+ YVI+DRA+P I DGLKPVQRRI++ M E+ +F K Sbjct: 60 QEEEAPLAVNYRNWFLDYASYVILDRAVPHIDDGLKPVQRRILHTMWEM---EDGRFHKL 116 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 A VG + ++HPHGD++ A+V + Q R LV+ QGN+G AA RY E+ Sbjct: 117 ANIVGATM-RFHPHGDASIGAALVGLGQ----RGFLVEPQGNFGNLLTGDDAAAPRYIEA 171 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 RL+ +++ +L T W ++DG +EP LPA+ P +LL G GIAVG+AT I PH Sbjct: 172 RLTAFAKDVL--FNPKTTPWQLSYDGRAREPVTLPAKFPIVLLEGAEGIAVGLATKILPH 229 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR--GSVRM 241 N ++ +AAI + + PD+PT S Y +G G V++ Sbjct: 230 NFNDLCRAAINHLQGKTFRI--------YPDFPTGGVADFSE------YNDGERGGKVKI 275 Query: 242 RAVWKK-EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 RA + + I+ LP + ++E I A K+ +R D+ ++V Sbjct: 276 RAKIEIRSKYLLAITELPFGSTTESLIESILAANAKGKIK----IRHVDDNTADAVEILV 331 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360 D ++++ L+ T + + +I D +P + EIL + + ++R Sbjct: 332 HLPQGSDPEKLIQQLYVFTACQTNLSPAACVIE-DDKPHFLGVREILKRSVDKTKALLKR 390 Query: 361 RLNYRLEKVL--------KRLHILEGLLVAFLNI---DEVIEIIRNEDEPKPALMSRFGL 409 L R ++ +R+ I E + V++ IR +P + R + Sbjct: 391 ELEIRQAELEQQWHWDSLERIFIEERIYRRIEKSKTWQSVLDEIREGLQPFLKQLRR-PV 449 Query: 410 TETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADA 469 T+ + E++++ ++ + ++E E + + L + ++LQ Sbjct: 450 TDDDITRLTEIRIKRISAYNRFQADEAIKKIEAELRETKANLKALTAYAVAWFEQLQE-- 507 Query: 470 QAYGD--DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKA 527 YG RR+ E E+ A + +Q +V G GLN++ Sbjct: 508 -KYGKGLKRRTSYDEIEQINAAE----------VVSANQRLYVNREDGFI----GLNWRQ 552 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLM 587 + + VV + G ++ + G + P + M Sbjct: 553 HEYVQD---CTILDSVVCLMRDG---SLKVSKVAEKVFMGRDIIHCAVFPKDGDPNFYTM 606 Query: 588 ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM----- 642 D++ S + L +R + E + V+ + + +M Sbjct: 607 VYQDKE----SGKAFAKRFQIGGL---SRDKLYSLVKSEGSRVVYLEISKTEKEMPKKLR 659 Query: 643 LLAITQAGRMLM---FPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLA 687 + ++G + F + +P S+ KG + P + R + LA Sbjct: 660 IFIDGRSGARVREFDFELDRVPVSSRSAKGLTVTKWPVKDVKRADLALA 708 >UniRef50_B9XEN7 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=bacterium Ellin514 RepID=B9XEN7_9BACT Length = 701 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 151/614 (24%), Positives = 270/614 (43%), Gaps = 66/614 (10%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 LH+ + ++L Y+ YVI DRA+P + DGLKPVQRRI++++ E +F K A Sbjct: 57 ETPLHKRMDFSFLEYASYVIRDRAIPNLADGLKPVQRRILWSLHE---KDDGRFIKVATI 113 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 G +YHPHG++A +A+V++ + + L++GQGN+G AA RY E RL+ Sbjct: 114 SGHC-AQYHPHGEAAIGDALVVI----TNKRYLIEGQGNFGNIYTGDPAAAPRYIECRLT 168 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 + + L ++VP++DG +EP LP++LP +L+ GT GIAVGM+ I PHN Sbjct: 169 ELARNEL--FNDELTEFVPSYDGRNKEPVTLPSKLPTLLMLGTEGIAVGMSCKILPHNFP 226 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 E+ +A IA++ + + PD+PT + Y +G+GS+++RA K Sbjct: 227 ELLEAQIAILKKQPFKVL--------PDFPTGGLMDARE------YADGKGSIKVRAKIK 272 Query: 247 -KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNR 305 K++ VVI +P + ++ I R K+ + + D + E + + + Sbjct: 273 AKDESTVVIKEIPPMTTTDSLIGSIEDASRKGKIK-IKSINDFTSEEA---EIEIKAPSG 328 Query: 306 VDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYR 365 V DQ+++ L+A TD E S + +I + RP + E+L E DT++R L + Sbjct: 329 VSADQLIDALYAFTDCEMSISSRIIVI-RNNRPVEMTVSEVLRENTAQLVDTLKRELELK 387 Query: 366 LEKVLKRLHILEGLLVAFLN-IDEVIEIIRNEDEPKPALMSRF---------GLTETQAE 415 +K+ + LH + + N I + IE + + A+ F L +T E Sbjct: 388 EKKLQEELHFKTLVRIFIENRIYKKIEQCKTNEAVYEAVYDGFKPFRKEMIRDLVDTDVE 447 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG-- 473 +L +++R ++ + K R E +++ L + + L+A + YG Sbjct: 448 MLLGVRIRRISLFDINKHREEIDKIK---ADLSETAKHLKNLTKYAIGRLEALLEKYGPI 504 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKA 533 R + S +D + ++ V ++ + R + G ++ Sbjct: 505 YPRLTK---------SSRYDEVEAKDVAFKAFKVAYDRESGYVGHKVSGEEFR------- 548 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQK 593 V ++ + G L G P +P + + + + Sbjct: 549 -VDCTKFDKLLLIFRDG---HYKVTELQEKLFVG-PDVVYCGIPDRDRIFTLAYTNREAT 603 Query: 594 LLMASDAGYGFVCT 607 L G + Sbjct: 604 YLKRFTFGGIIMNK 617 >UniRef50_A4CLF9 DNA topoisomerase IV subunit A n=21 Tax=Bacteria RepID=A4CLF9_9FLAO Length = 907 Score = 378 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 149/709 (21%), Positives = 287/709 (40%), Gaps = 81/709 (11%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 + ++ +L+Y+ YVI++RA+P I DG KPVQRRI++A+ E+ ++ K A VG Sbjct: 23 VTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHALKEMD---DGRYNKVANVVGQ 79 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 + +YHPHGD++ +AMV + Q L+D QGNWG AA RY E+RLSK++ Sbjct: 80 TM-QYHPHGDASIADAMVQIGQKD----LLIDTQGNWGNILTGDGAAASRYIEARLSKFA 134 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 ++ +W ++DG +EP LP + P +L G GIAVG++T I PHN E+ Sbjct: 135 LEVV--FSPKITEWQLSYDGRKKEPVHLPVKFPLLLAQGAEGIAVGLSTKILPHNFIELI 192 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR--GSVRMRAVW-K 246 A+I + + L PD+PT I Y +G G VR+RA + Sbjct: 193 DASIKHLQGKRFKL--------YPDFPTAGIIDIGN------YNDGERGGKVRVRARIAQ 238 Query: 247 KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRV 306 ++ +VIS +P+ + + +++ I +K + + D + E ++V + + Sbjct: 239 QDKNTLVISEIPYGTNTSSLIDSILKA-NDKGKIKIKKIEDNTAAE---VEILVHLPSGI 294 Query: 307 DMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRL 366 D+ ++ L+A T E S L I D +P + E+L + ++ L L Sbjct: 295 SPDKTIDALYAFTACETSISP-LGCIIEDNKPVFMGVSEMLRRSTDHTVELLQAELEILL 353 Query: 367 EKVLKRLHILEGLLVAFLNI-----------DEVIEIIRNEDEPKPALMSRFGLTETQAE 415 ++ ++ H + N + VI I +P + R +TE Sbjct: 354 GELQEQWHAASLERIFIENRIYRDIEEEETWEGVIAAIGKGLKPHTGHLRR-EVTEEDIV 412 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY--G 473 + E++++ +++ + K + LEK + + LA + + + + + G Sbjct: 413 RLTEIRIKRISRFDLDKAQEHLDNLEKRIAETKHHLA---HLTDYAIDYFRELKKNFGAG 469 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKA 533 +R+S ++ +E +A ++ + +V +G G + + + Sbjct: 470 RERKSEIRVFDEIEATK----------VVIRNTKLYVNREEGFI----GTSLRKDEYVTD 515 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK-LTLPPGATVDHMLMESDDQ 592 ++ +G+ S G+ + + + ++ D + Sbjct: 516 ---CSDIDDIIVFTKSGQMMITRVD---SKTFVGKNIIHVAVYKKKDKRTTYNMIYKDGR 569 Query: 593 KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI----TQ 648 T + L + V+ + ++ + + Sbjct: 570 GGPSYVKRFNVTAFTRDKLYDLTTG-------KAQSEVLYFTANPNGEAEVVTVNLRQSG 622 Query: 649 AGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQST 697 + + L + + + KG+ K + R E L L P+ Sbjct: 623 SIKKLKWDLDFADVMIKGRNAKGNIVTKYPVKRIELKEKGLSTLKPRKI 671 >UniRef50_D1QVZ0 DNA topoisomerase 4 subunit A n=2 Tax=Prevotella RepID=D1QVZ0_9BACT Length = 978 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 163/763 (21%), Positives = 305/763 (39%), Gaps = 98/763 (12%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 D + L +N +L+Y+ YVI++RA+P I DGLKPVQRRI+++M + ++ K Sbjct: 107 DASAVHHLSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNK 163 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 A VG + ++HPHGD++ +A+V M Q L+D QGNWG AA RY E Sbjct: 164 VANIVGHTM-QFHPHGDASIGDALVQMGQKD----LLIDCQGNWGNILTGDRAAAPRYIE 218 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +RLSK++ ++ T DW ++DG +EP LP + P +L G GIAVG+++ + P Sbjct: 219 ARLSKFALDVV--FNPKTTDWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKLLP 276 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR--GSVR 240 HNL E+ AAI + L PD+PT I S+ Y +G+ G ++ Sbjct: 277 HNLNEICDAAIKYLRGEDFQL--------YPDFPTGGAIDVSK------YNDGQRGGVLK 322 Query: 241 MRAVWKK-EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 +RA +K ++ +VI +P + +++ I + K+ + D + E ++ + Sbjct: 323 VRAKIEKLDNKTLVIREIPFSKTTTTLIDSILKAIDKGKIKA-KRVDDNTAAEVEIQVHL 381 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 P V D+ M+ L+A +D E + N +I D +P + ++L + +R Sbjct: 382 AP---GVSSDKTMDALYAFSDCEINISPNCCVIE-DNKPCFLTVSDVLRHGVDRTMGLLR 437 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFL-------------NIDEVIEIIRNEDEPKPALMSR 406 + L R ++L++L + +++E + + + P R Sbjct: 438 KELQIRRGELLEQLFFASLERIFIEQRIYKEKKFEQAADMNEAVAFVDLKLTPFKPDFIR 497 Query: 407 FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ 466 +T ++E+K++ + K + K + ++ E +++ M ++ Sbjct: 498 -EVTRDDILRLMEIKMQRILKFNKDKADELIARIKAEVAEIEH---DLEHMTDVTINWFM 553 Query: 467 ADAQAYGD--DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN 524 YG+ R + ++ + + + +Q ++ +G G Sbjct: 554 FIKNKYGNEHPRHTEIRSFDTIDSAK----------VVEANQKLYINRQEGFI----GTG 599 Query: 525 YKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDH 584 K + ++ G+ I G+G + Sbjct: 600 LKKDEFV---CNCSDIDDIIIFYKNGKYKIIKVADKIFV-GKGIIWLQVFK-KNDKRTIY 654 Query: 585 MLMESDDQKLLMASDAGYGFVCTFN---DLVARNRAGKA---LITLPENAHVMPPVVIED 638 ++ D ++ T + DL A K A ++ V+ D Sbjct: 655 NVVYKDGREGYYYMKRFNVTSMTRDREYDLTAGTPGSKVNYFTANPNGEAEIIKVVLEPD 714 Query: 639 ASDMLLAITQAGRMLMFPVSDL-PQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQST 697 + R +F D + K +G K + + R L Q Sbjct: 715 P--------KKKRQNIFLERDFSKVMIKSRGAKGVILTKQSIHR--------IGLKSQGH 758 Query: 698 LTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEID 740 T+ G RK+ P +++++ E G + DR+ + Sbjct: 759 STL--GGRKVWFDP-DVKRINYE--EHGRFLGEFFDEDRILVI 796 >UniRef50_A6DRS7 DNA topoisomerase IV subunit A n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DRS7_9BACT Length = 808 Score = 366 bits (941), Expect = 1e-99, Method: Composition-based stats. Identities = 135/555 (24%), Positives = 241/555 (43%), Gaps = 63/555 (11%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 L+ +++Y+ YVI DRA+P + DGLKPVQRRI++ + + KF K A VG Sbjct: 33 LNRMMTGNFIDYASYVIKDRAIPDVDDGLKPVQRRILHTLFKAD---DGKFHKVANIVGA 89 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 + YHPHGDS+ Y A+V +A + ++ QGN+G + +A RY E RLS + Sbjct: 90 CM-AYHPHGDSSIYGALVTVA----NKEYFIEKQGNFGNILTGDNASAARYIECRLSPLA 144 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 L T ++V ++DG +EP LPA++P +L+ GT GIAVGMAT I PHN E+ Sbjct: 145 RETL--FNTETTEFVDSYDGRNKEPVCLPAKVPALLMMGTEGIAVGMATRILPHNFNELL 202 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK-E 248 +A I ++ + + PD+ + S+ Y+ GRG V +RA Sbjct: 203 KAQIKILRGQRFEI--------YPDFLCGGIMDISQ------YDFGRGKVTVRAKIDILN 248 Query: 249 DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308 + +VI + + ++ I +N K+ + ++D + + + V Sbjct: 249 NKTLVIKQVAPGTTTESLMSSIEEAAKNGKIK-IASIQDYTAEH---VEIEINLPRGVQA 304 Query: 309 DQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEK 368 D +N L+A T E S N+ +I GRP ++ E+L + +R L K Sbjct: 305 DWALNALYAFTQCEVSLSPNITVIQR-GRPKEIHVGEVLHHNTQTLVNILRWELLNEQNK 363 Query: 369 VLKRLHILEGLLVAF-LNIDEVIEIIRNEDEPKPALMS---------RFGLTETQAEAIL 418 + ++ H + I + IE ++ E A+ S R +++ E +L Sbjct: 364 LNEKYHDRTLERIFIEERIYKKIEECTSQSEVFEAVRSGLKPFLDQLRRDVSDEDIERLL 423 Query: 419 ELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD--DR 476 + +R ++ + K E E+ K L+ + + + + ++ YG R Sbjct: 424 RIPIRRISLFDINKNNKELEEILK---ALKEVAYNLEHLKDYTINFIKNLISKYGKQYPR 480 Query: 477 RSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVK 536 + ++ E+ A + + + ++G+ + N +K Sbjct: 481 LTEIKSIEKVDA---------KEIAVANVKLGYDKVGGYIGTQINNGN---------HIK 522 Query: 537 GKSNQPVVFVDSTGR 551 ++ + G+ Sbjct: 523 CTEFDRIIILTKDGK 537 >UniRef50_C3JAA3 DNA gyrase subunit A n=3 Tax=Bacteria RepID=C3JAA3_9PORP Length = 899 Score = 365 bits (937), Expect = 3e-99, Method: Composition-based stats. Identities = 167/791 (21%), Positives = 309/791 (39%), Gaps = 98/791 (12%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 +D+ +L + +L+Y+ YVI++RA+P I DGLKPVQRRI+YAM L + Sbjct: 40 TDVVRLHSLPQMYRTWFLDYASYVILERAVPHIEDGLKPVQRRILYAMQ---LFENGHLH 96 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K A+ VG + +HPHGD++ +A+V + Q + L+D QGNWG AA RY Sbjct: 97 KVAKIVGQTM-AFHPHGDASINDALVQLGQ----KGFLIDTQGNWGNTLTGDEAAAGRYI 151 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E++LS + +L +W +DGT EP LP R P +L G GIAVG+++ I Sbjct: 152 EAKLSSLALEVL--FDSKLTEWKRTYDGTADEPVALPVRFPLLLAQGAEGIAVGLSSRIY 209 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR--GSV 239 PHN +E+ +AAIA + L PD+PT + + Y +G G++ Sbjct: 210 PHNPKELLEAAIAYLRGESFEL--------YPDFPTGGLLDVDK------YNDGHRGGAL 255 Query: 240 RMRAVW-KKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + RA K +D + I+ LP + ++E I K+ + + D + R+ Sbjct: 256 KCRAKIEKIDDRVLSITELPFGKTTTSLIESILKANEKGKIK-IKHIDDMTAATADIRI- 313 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 V D+ ++ L+A TD E N +I +G P + ++L ++ + Sbjct: 314 --QLPAGVSTDKTIDGLYAFTDCEVGLSPNACVIK-EGTPVFLGVSDLLKYSADRTKELL 370 Query: 359 RRRLNYRLEKVL--------KRLHILEGLLVA-----FLNIDEVIEIIRNEDEPKPALMS 405 +LNYRL +V +R+ I + + ++ +R E L+ Sbjct: 371 VAQLNYRLGEVQDALVTASLERIFIENRIYKDKPFEEAACEADALDHVRKRIEAMEDLVF 430 Query: 406 RFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKEL 465 +TE + +LE+K+ + + K ++L ++ ++ LA Sbjct: 431 VRPITEADLKRLLEIKMARILRFNIEKHEERIAQLMRDARTIEKHLAHST---QYTIDYY 487 Query: 466 QADAQAYGDD--RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGL 523 + +G R++ + +A I ++ + G G Sbjct: 488 TRLLKEFGAGWTRKTTIARFGTIEATK----------VIEATEKLYFDREGGF----AGT 533 Query: 524 NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPL-TGKLTLPPGATV 582 K + + ++ + G Y I I G+GE L + T+ Sbjct: 534 GLKNAEFVA---ECSLLDEMIVIFRNGT-YRISKIEEKKFIGRGEVLYINRFRRNDNRTI 589 Query: 583 DHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM 642 +++ + + C+ + LI+ E + + + Sbjct: 590 YNIIYRQGKRGPWL------IKRCSITGI--SRDKDYNLISDEEGSRITYFSANPNGEAE 641 Query: 643 LLAITQAG----RMLMF--PVSDLPQLSKGKGNKIINIPSAEAA----RGEDGLAQLYVL 692 + I R+L F S++P +G ++ + RG L + Sbjct: 642 TVRIALKPQPRMRVLTFEKSFSEVPIRGRGAKGNLVTRAEVQRITLKQRGASTLGGRKIW 701 Query: 693 PPQSTLTIHVGKR-----------KIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDS 741 + + I+ + ++ + ++ T + G G R+++ + + Sbjct: 702 FDRDVMRINYNGQGEFIGEFEAEDRLLVFAKDGSVYTTDFGESNHFPGGTTRVEKFDANK 761 Query: 742 PRRASSGDSEE 752 D E+ Sbjct: 762 VWSVVYFDKEQ 772 >UniRef50_Q73KU9 Topoisomerase IV, A subunit, putative n=2 Tax=Treponema RepID=Q73KU9_TREDE Length = 703 Score = 364 bits (935), Expect = 7e-99, Method: Composition-based stats. Identities = 138/622 (22%), Positives = 253/622 (40%), Gaps = 73/622 (11%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 + +L Y+ YVI DRA+P + DGLKPVQRRI++++ E+ KF K A +G Sbjct: 4 IESLFNKNFLEYASYVIRDRAIPDLEDGLKPVQRRILHSLFEMD---DGKFHKVANVIGH 60 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 + KYHPHGD++ A+V++A + +D QGN+G +A RY E R+++++ Sbjct: 61 CM-KYHPHGDASIGNALVVLA----SKELFIDTQGNFGNIFTGDEASAPRYIECRVNEFA 115 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 + + D+ ++DG +EP A+LP IL G GIAVGM+T I PHN+ E+ Sbjct: 116 KTIF--YNPHITDYTVSYDGRNKEPLAFRAKLPVILAIGAEGIAVGMSTKILPHNILEII 173 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK-E 248 +A A + L PD+PT I S YE+G G V +RA + Sbjct: 174 EAEKAFLSGKSFAL--------FPDFPTGGLIDVSE------YEDGLGKVLVRAKLDTSD 219 Query: 249 DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308 + +VI LP + ++ I A + K+ + ++ SD+ + + V Sbjct: 220 EKRIVIRELPFGSTTESMINSIEAASKAGKVK-ISEI---SDYTGENVEIELKLPRGVYS 275 Query: 309 DQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEK 368 V++ L+A T+ E+S NL +I D P + +I+ ++ L Y Sbjct: 276 ADVVDALYAFTECEQSIPCNLLVIK-DNLPVQITVTDIIKYHAKQLMQILKDELEYERAM 334 Query: 369 VLKRLHILEGLLVAF-LNIDEVIEIIRNEDEPKPALMSRF---------GLTETQAEAIL 418 + +RLH+ + I + IE ++ + A++ F +TE + +L Sbjct: 335 LTERLHLRTLERIFIEERIYKKIETMKTAEGVINAVIKGFVPFKKELIRDVTEDDVDKLL 394 Query: 419 ELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD--- 475 ++ +R ++ + K R E E+ ++ +L + + L A + Sbjct: 395 KIPIRRISLYDINKNREEVREINNRLKEIAKLLKN---LKGYAISVLDGIAAKLPAEEFK 451 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 R++ + + +++ +R + + K + Sbjct: 452 RKTEITGFTKVDVKEA------------VTRDTALRYDEETGYLGTSVTT-----GKDIL 494 Query: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLMESDDQK 593 + + + +G Y + +P G G + V ++ D + Sbjct: 495 RVSPYDRIFVLRKSG-VYT--VMDVPDRVFVDTGMWYCGFAEKEELSKVLFTVIYRDSK- 550 Query: 594 LLMASDAGYGFVCTFNDLVARN 615 + Y + Sbjct: 551 ----TKYAYIKRARVEGYILNR 568 >UniRef50_B4D1N9 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1N9_9BACT Length = 745 Score = 362 bits (930), Expect = 3e-98, Method: Composition-based stats. Identities = 149/710 (20%), Positives = 285/710 (40%), Gaps = 88/710 (12%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 E+ L N +L Y+ YVI+DRA+P I DGLKPVQRR+++ + ++ +F K A Sbjct: 68 EQAPLAVSYRNWFLEYASYVILDRAVPHIDDGLKPVQRRVLHTLWDMD---DGRFHKVAN 124 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 VG + K HPHGD++ A+V + Q R L++ QGN+G + AA RY E+RL Sbjct: 125 VVGATM-KLHPHGDASIEAALVAIGQ----RGWLIEPQGNYGNTLTGDAAAAARYIEARL 179 Query: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 + ++ +L T W ++DG +EP LPA+ P +LL G GIAVG++T I PHN Sbjct: 180 TPFARDVL--FNPKTTVWQQSYDGRTKEPVTLPAKFPIVLLEGAEGIAVGLSTKILPHNF 237 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR--GSVRMRA 243 ++ +AAI + + PD+PT + Y +G G V++RA Sbjct: 238 NDLCRAAINHLQGKTFRIL--------PDFPTGGTGDFTD------YNDGERGGKVKVRA 283 Query: 244 VWKKEDGA-VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 ++ + + I+ LP+ V+ ++E I A K+ ++ D+ ++V Sbjct: 284 RIEEHSKSVLCITELPYGVTTESLIESILAANAKGKIK----IKHVDDNTASKVEILVHL 339 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDG-----RPAVKNLLEILSEWLVFRRDT 357 D+V+ L+ T + +I D RP + +IL + ++ Sbjct: 340 PPGSQPDKVVQQLYVFTSCQVQLNPAACVIVRDPETGEDRPQFMGVRDILKASVDATKEL 399 Query: 358 VRRRLNYRLEKVL--------KRLHILEGLLVAFLNI---DEVIEIIRNEDEPKPALMSR 406 +++ L +L ++ +R+ I E + + V+E IR +P + R Sbjct: 400 LKQELEIKLGELEQQWHWDSLERIFIEERIYRRIEKSQTWESVLEEIRTGLKPFIGNLRR 459 Query: 407 FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ 466 +TE + E++++ ++ + ++E+ + + L + + + Sbjct: 460 -EVTEEDIVRLTEIRIKRISAYNRFQADEALKKIEEAIKETKHHLKN---LVAYAVDWFE 515 Query: 467 ADAQAYGD--DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN 524 + YG RR+ E + + +Q +V G GLN Sbjct: 516 RLQEKYGKGVKRRTTYDEIAQI----------DASAVVSANQRLYVNREDGFI----GLN 561 Query: 525 YKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDH 584 ++ + + V+ + G ++ + G + P ++ Sbjct: 562 WRQHEFV---TECSILDSVLTIMRDG---SLKVTKVADKVFMGRKIIHIGLWPKDGDMNF 615 Query: 585 MLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASD--- 641 M D + + + L +R + E++ ++ + Sbjct: 616 YTMVYQDGE----TGKAFAKKFQIGGL---SRDKLYSLVKSEDSKIIFLHISPSEQAMPK 668 Query: 642 --MLLAITQAGRMLM---FPVSDLPQLSKGKGNKIINIPSAEAARGEDGL 686 + ++G + F ++ LP ++ I S + + L Sbjct: 669 TLHVSVDGRSGARVRELDFDLTALPVSTRTSKGLTITKWSVKEVKAAKPL 718 >UniRef50_Q1NV80 DNA gyrase/topoisomerase IV, subunit A n=4 Tax=Deltaproteobacteria RepID=Q1NV80_9DELT Length = 711 Score = 360 bits (924), Expect = 1e-97, Method: Composition-based stats. Identities = 147/673 (21%), Positives = 277/673 (41%), Gaps = 109/673 (16%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + A+ LH + +L+Y+ YVI +RA+P + DGLKPVQRRI+ + + +F K Sbjct: 51 ETAQYGELHRLFDENFLDYTSYVIRERAIPDLADGLKPVQRRILQTLHNMD---DGRFHK 107 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 A VG+ + K HPHGD++ + A+V +A + L+D QGN+G +A RY E Sbjct: 108 VANVVGETM-KLHPHGDASIFSALVNLA----NKGYLIDRQGNFGNVHTGDGASAPRYIE 162 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 RLS + + + +++ ++DG ++EP LPARLP +LL G GIAVGMAT I P Sbjct: 163 CRLSPLARETM--FNKELTEFIDSYDGRMKEPVSLPARLPLLLLQGADGIAVGMATKIMP 220 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HN E+ A+ ++ + L PD+P + S YE+G G +R R Sbjct: 221 HNFGELLTASKQILREEPFEL--------FPDFPQGGLLDAS------GYEDGNGRLRCR 266 Query: 243 AVWK-KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 A + ++D +VI +P+ + ++E + R K + + D + + + + Sbjct: 267 ARIETRDDKTIVIRDIPYGTTTQSLIESVEKAARAGKFK-ILSIDDYTAED---VEIEIK 322 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT---- 357 + ++ + L+A TD E N +I + PA+ + E+L E R Sbjct: 323 LARGFKAEETIKALYAFTDCEIPISPNFTVI-REQTPAIMTVSEVLRENTARLRQLLKKE 381 Query: 358 -------VRRRLNYRL-------EKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPAL 403 +R +L RL E++ K++ L V ID+ ++ P A Sbjct: 382 LELDLARLREKLQARLLEQIFIEERLYKQIEECPSLAVVLTTIDKALK-------PFAAE 434 Query: 404 MSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKK 463 + R ++ E +LE++++ +++ + + + E + K+ ++ LA + + Sbjct: 435 LVR-PVSREDLERLLEIRIKRISRYDIERQKKEIKGIRKDIVAVEKNLAD---LTAYAIR 490 Query: 464 ELQADAQAYGD--DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP 521 L + YG RR+ L +E +A + LS + Sbjct: 491 FLDDLLKRYGQQYPRRTELTSFKEVQA-----------SQVALSNLSLA-YDPESGFLGT 538 Query: 522 GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA-------RGQGEP----L 570 + A + ++ + +G + +P + G+ + Sbjct: 539 QVKTSAENRLA----CSEYDKILLISRSG---WYKVVAVPDKIFVGHDLKWWGKAADKTI 591 Query: 571 TGKLTLPPGATVDHMLMESDDQKLL-----------------MASDAGYGFVCTFNDLVA 613 + + ++ + + +L + + +G Sbjct: 592 FNLVYRDGAQNLCYVKRFTTPKFILDKEYRLFAEHRRSEILFLKTGSGVNIRTQLAP-SP 650 Query: 614 RNRAGKALITLPE 626 R+R + + L + Sbjct: 651 RSRKNREVFRLDD 663 >UniRef50_C6XSV0 DNA topoisomerase (ATP-hydrolyzing) n=61 Tax=Bacteria RepID=C6XSV0_PEDHD Length = 977 Score = 359 bits (922), Expect = 2e-97, Method: Composition-based stats. Identities = 150/710 (21%), Positives = 282/710 (39%), Gaps = 82/710 (11%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 + ++ EN +L+Y+ YVI+DRA+P I DGLKPVQRRI++++ E+ +F K+A + Sbjct: 18 IPINGLYENWFLDYASYVILDRAVPHINDGLKPVQRRIMHSLKEMD---DGRFNKAANVI 74 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 G+ + KYHPHGD++ +AMV + Q L+D QGNWG P + AA RY E+RLSK Sbjct: 75 GNTM-KYHPHGDASIGDAMVQIGQKD----LLIDCQGNWGDPITGDNAAAPRYIEARLSK 129 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 ++ ++ T W ++DG EP LP + P +L G GIAVG+AT + PHN E Sbjct: 130 FANEVV--FNGDTTIWQLSYDGRNNEPVTLPVKFPLLLAQGAEGIAVGLATKVMPHNFIE 187 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR--GSVRMRAVW 245 + A+I + + + PD+ T S Y G G +R+RA Sbjct: 188 LLDASIEALQGHRPNIL--------PDFFTGGMADFS------AYNEGMRGGRIRVRAKI 233 Query: 246 -KKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 +K+ +VI+ +P+ + V++ I + K+ + D+ +++ + Sbjct: 234 TEKDKKTLVITEIPYSTTTGSVIDSILSANDKGKIKIKKI----EDNTAAHVEIVIQLAP 289 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 364 + D ++ L+A T E S N I D +P ++ +IL E + + +++ L Sbjct: 290 GISPDVTIDALYAFTSCEVSISPN-TCIIKDEKPQFLSVNDILIENSMHTKALLKKELEI 348 Query: 365 RLEKVLKRLHILEGLLVAF-------------LNIDEVIEIIRNEDEP-KPALMSRFGLT 410 +L ++ +++ L + +N + V+E++ EP KP L + Sbjct: 349 KLHELQEKIFFSSLLKIFIQEGMYKNAEYENSVNFEMVVEVLNRLFEPFKPGLYRE--IL 406 Query: 411 ETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQ 470 + +++ + + + + K + L E ++ L R + Q Sbjct: 407 PEDFKKLIDKPMSSITRFDVKKADEQMKALSDEIKVVKNHL---RHLTEYAIAWFQKLKD 463 Query: 471 AYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDS 530 YG R + R + + L + V+ + G + + Sbjct: 464 KYGKGRERKTEIRLFDRVEASKVALAN------------VKLYMNREDGFIGTGLRKDEF 511 Query: 531 FKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESD 590 ++ G+ + G+G + ++ D Sbjct: 512 VAD---CSDIDELIVFREDGKCIITKVAD-KTFVGKGILHAQVFK-KGDERTIYNMIYKD 566 Query: 591 DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI---- 646 + T + + K + V+ + ++ + Sbjct: 567 GASGVSYIKRFAVVGVTRDKEYDLTKGSK-------GSKVLYFTANPNGEAEIVTVQLKP 619 Query: 647 TQAGRMLMFPVS--DLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLP 693 + L F + ++ +G GN + P + G++ L L Sbjct: 620 HSKLKKLQFDLDFAEIAIKGRGSQGNIVSKYPVKKILLKSKGVSTLSGLK 669 >UniRef50_D2QEJ6 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Bacteroidetes RepID=D2QEJ6_9SPHI Length = 904 Score = 358 bits (918), Expect = 7e-97, Method: Composition-based stats. Identities = 139/514 (27%), Positives = 243/514 (47%), Gaps = 46/514 (8%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 ++ + EN +L+Y+ YVI++RA+P + DGLKPVQRRI++A+ E+ +F K A Sbjct: 48 DQTVVSGLYENYFLDYASYVILERAVPAVEDGLKPVQRRILHALKEMD---DGRFNKVAN 104 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 +G + ++HPHGD++ EA+V + Q + L D QG+WG AA RY E RL Sbjct: 105 VIGQTM-QFHPHGDASIGEALVNIGQ----KELLFDTQGSWGDVRTGDGAAAPRYIEVRL 159 Query: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 SK+++ + T +W ++DG +EP LP + P +L G GIAVG++T I PHN Sbjct: 160 SKFAQD--AIYNDKTTEWQLSYDGRKREPITLPVKFPLLLAQGVEGIAVGLSTKILPHNF 217 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR--GSVRMRA 243 E+ A+I ++ +L PD+ T I S Y +G G VR+RA Sbjct: 218 NELIDASINILKDKPVSL--------FPDFQTGGLIDVSN------YNDGHRGGKVRVRA 263 Query: 244 VWKKEDGAVV-ISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDES---DHENPTRLVI 299 ++ D ++ I +P+ V+ +++++ I K+ + R+ + D+ ++ Sbjct: 264 KIEEVDKKILAIRDVPYGVTTSQLIDSIVKAAELGKIRIKAPSRNVAAVVDNTAKDVEIL 323 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 V V D ++ L+A TD E S N +I D +P ++ +IL ++ Sbjct: 324 VHLQPGVSPDVTIDALYAFTDCEVSISPNACVIIGD-KPHFVSVTDILRVNTHQTVHLLQ 382 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLN-----------IDEVIEIIRNEDEPKPALMSRFG 408 R L R ++++RL + N + V+E I +P L R Sbjct: 383 RELEIRRSELMERLLYSSLEKIFIENRIYRKIEECETFEAVLEAIDKALKPHKKLFYRV- 441 Query: 409 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 +T+ + E+K++ ++K + K LE+E + + LA+ + K+LQ Sbjct: 442 ITQDDLIRLTEIKIKRISKYDGFKAEELMRRLEQELAETEDNLANITRFAIAYYKDLQ-- 499 Query: 469 AQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTI 502 + YG R + R + ++ + + Sbjct: 500 -KKYGKGRERKTEIRAFNTIAASVVAAANQKLYV 532 >UniRef50_C3GSY0 DNA gyrase subunit A n=3 Tax=Bacillus thuringiensis RepID=C3GSY0_BACTU Length = 745 Score = 356 bits (915), Expect = 1e-96, Method: Composition-based stats. Identities = 134/678 (19%), Positives = 270/678 (39%), Gaps = 63/678 (9%) Query: 12 EFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVL 71 ++ Y++Y+ V+ +RAL I DGLKPVQR +Y M + AK + VG + Sbjct: 46 QYLVRGYIDYAREVLTNRALEDIRDGLKPVQRYALYWMFK----EKAKDMIKSEQVGAGV 101 Query: 72 GKYHPHGDSACYEAMVLMAQPFSYRY-PLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSE 130 KYHPH + YE++ M + Y PL+ G+G G S AA RYT + + ++ Sbjct: 102 LKYHPHNADSAYESLTKMVESNGTFYVPLLIGKGELGKKFSNGSPAASRYTSVKFHENAK 161 Query: 131 LLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQ 190 + + + D V NFD T + P++LPA +P IL+ GIAVG +T P ++V Sbjct: 162 EMFTAMDG--IDMVWNFDDTERVPEVLPASVPYILMKYADGIAVGFSTKSPSFLPQDVTN 219 Query: 191 AAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDG 250 I K + + PD+ T I + E+ K+ + G+GS R + Sbjct: 220 LVREYIRDGKCST------MIVPDFSTGGFISYTEKELEKLMKTGKGSFMTRGKVFIDGK 273 Query: 251 AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQ 310 +V++ +P V+ +++++I P + D + + + NRV + Sbjct: 274 NIVVTEVPQGVTVEKIMKEIEKAEIQGITP--NGYSDLTGKDGCYFEITCRAKNRV--QE 329 Query: 311 VMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVL 370 V+ L+ T L+K + NL + + + + I+ W+ +RR + R+ L K++ Sbjct: 330 VLMELYTKTSLQKKFNSNLLAVESK-KLVITGVWGIIDRWVKWRRKVLTRQTRLDLAKLV 388 Query: 371 KRLHILEGLLVAFLN---IDEVIEIIRNED--EPKPALMSRFGLTETQAEAILELKLRHL 425 + +G + DE++E+ + + + AE I++ +L Sbjct: 389 ESAKYTKGFIDLLAIEGARDEIVELTTKKSDNDAIKRIQEYIQCERDVAEWIIKRRLNQF 448 Query: 426 AKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQA----DAQAYGDDRRSPLQ 481 + K + + + E +L+ L + ++ L+ +++ ++ + +RR+ + Sbjct: 449 RN--DNKYINQYANYQIEIAKLEKYLEN---IDTLILEDMDRFDLLVSKKH--ERRTEIT 501 Query: 482 EREEAKAMSEHD--MLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKS 539 + + D +P + + G++R G+ +G + Sbjct: 502 NKVYEVETVKEDEIEIPVSECYYQI-KDGFLRKLHVKPTSGEGI----------IFEGYT 550 Query: 540 NQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLMES-DDQKLLM 596 N ++ + S G + I + G G + L V + D++K ++ Sbjct: 551 NSTIIALSSEGEIFRIYGNDINYLTGNDIGTYIPTYSGLANAQHVQLIWATVCDEKKYVL 610 Query: 597 ASDAGYGFVCTFNDL------VARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAG 650 + G+ + R G + + E D ++ + Sbjct: 611 TYEDGFVGFLDTAEFLVGAIKSKYLRNGISA----HADKLTDVR--EYQEDSVIVVETHD 664 Query: 651 RMLMFP-VSDLPQLSKGK 667 ++ + + S+ Sbjct: 665 KLYACAHLDSIKMKSRTA 682 >UniRef50_P34030 DNA gyrase subunit A (Fragment) n=704 Tax=Bacteria RepID=GYRA_SPICI Length = 227 Score = 351 bits (902), Expect = 5e-95, Method: Composition-based stats. Identities = 109/215 (50%), Positives = 154/215 (71%), Gaps = 1/215 (0%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + + + +N +L+Y+M VI+ RA+P + DGLKPV RRI+YAM +L + + KKS Sbjct: 14 KIRDIDIADEMKNGFLDYAMSVIVSRAIPDVRDGLKPVHRRIIYAMWDLKMTYEKQHKKS 73 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VG+V+GKYHPHGD+A YEAMV MAQ FSYRYPL+DG GN+G+ D AAMRYTE+ Sbjct: 74 ARIVGEVIGKYHPHGDTAVYEAMVRMAQDFSYRYPLIDGHGNFGSMDGDPP-AAMRYTEA 132 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 ++SK + ++ ++ + T ++ N+DG+ +EP LP PN+L+NG +GIAVGMAT+IPPH Sbjct: 133 KMSKIAGEIIKDIEKETTIFIDNYDGSEEEPTFLPGYFPNLLVNGASGIAVGMATNIPPH 192 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTE 218 NL EV IA+ P+ T +L+ I++GPD+PT Sbjct: 193 NLNEVIDGVIAVTKNPEITTVELMKIIKGPDFPTG 227 >UniRef50_A7ANB1 DNA topoisomerase 2 n=3 Tax=Piroplasmida RepID=A7ANB1_BABBO Length = 1437 Score = 347 bits (890), Expect = 1e-93, Method: Composition-based stats. Identities = 110/515 (21%), Positives = 207/515 (40%), Gaps = 70/515 (13%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 ++L +F + +S+Y +R++P + DG KP QR++++ + L K + Sbjct: 657 IKKLRYTDFINKELIQFSIY-DTERSIPSVVDGWKPGQRKVLFGCLKRNLVGECKVAQLT 715 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYT 121 V + YH HG+++ + ++ MAQ F S +++ G +G+ + K +A RY Sbjct: 716 GYVAE-HSAYH-HGEASLQQTIINMAQNFVGSNNINVLEPCGQFGSRKEGGKDASAARYI 773 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 ++L+ + L+ E ++ N +G EP +P +L+NG+ GI G ++ IP Sbjct: 774 FTKLNPITRLIFVEEDDNILEYQ-NEEGQTIEPMYYIPTIPMVLVNGSEGIGTGFSSQIP 832 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 +N ++ ++ P EI N +G Sbjct: 833 NYNPLDIIDNLKRYLNNVDMK-------------PMVPWYHKFTGEIEP---NDKGGFDC 876 Query: 242 RAVWK--KEDGAVVISALPHQVSGARV---LEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 ++ E+G + I+ LP + LE + + N K P++ D S HE+ Sbjct: 877 LGNYQWLDENGLLEITELPIRKWTHDYRVFLESLEQGV-NGKEPLILGFVDNSTHESVHF 935 Query: 297 LVIVPRSNRVDMDQVMNH-LFATTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEWLV 352 + V N +++V+N + L S NM D +K N LEI+ ++ Sbjct: 936 TLNV---NPECIEEVINEGVDKVFKLRTSIAT-TNMTLFDANKKLKRYSNELEIIRDFAA 991 Query: 353 FRRDTVRRRLNYRLEKVL----------KRLHILEGLLVAF--------------LNIDE 388 R T +R Y + + + +H++ + L D Sbjct: 992 VRLATYEKRKTYLINNLKLLLRRISNQVRFIHMVVNEELVLFKKAKATLVAELRDLGFDS 1051 Query: 389 VIEIIRNEDEP----KPALMSRFGLTET----QAEAILELKLRHLAKLEEMKIRGEQSEL 440 +I++ +EP +P SR T+ +L + L L + K+ E ++ Sbjct: 1052 NTDILKGSEEPSTLNEPVTPSRRSGTQDAPGADYNYLLNMPLWSLTLEQVQKLNEEHAQK 1111 Query: 441 EKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 E + L A++ M++L K E+ A AY D Sbjct: 1112 ENQLRILLETTATDMWMDDLNKVEV-AIKMAYQQD 1145 >UniRef50_B9PK68 DNA topoisomerase 2 n=3 Tax=Toxoplasma gondii RepID=B9PK68_TOXGO Length = 1688 Score = 342 bits (877), Expect = 4e-92, Method: Composition-based stats. Identities = 117/518 (22%), Positives = 197/518 (38%), Gaps = 82/518 (15%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 A L+ +F + +S Y +R++P + DG KP QR++++A + + K + A Sbjct: 772 ASSLSYSDFVNKELILFSRY-DTERSIPQLVDGWKPGQRKVLFACIKKNMKHELKVAQLA 830 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYT 121 V +V YH HG+++ + +V MAQ F S ++ G +G+ + K +A RY Sbjct: 831 GYVSEV-SAYH-HGEASLQQTIVTMAQRFVGSNNLNFLEPVGQFGSRKEGGKDASAARYI 888 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 +RL+ Y+ L+ E ++ +G EPKM +P +L+NG+ GI G ++ +P Sbjct: 889 FTRLAFYTRLVFHEADDPILEYEYE-EGQRIEPKMYVPVIPTVLINGSEGIGTGWSSFVP 947 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 +N R+V + ID + R I + G G + Sbjct: 948 NYNPRDVIENLRRYIDGEEMQR-------------MTPWYRGFRGRIEE-NAAGTGFETI 993 Query: 242 RAVWKKEDGAVVISALPHQVSGARVLEQIAAQM--RNKKLPMVDDLRDESDHENPTRLVI 299 V + + + I+ LP + E + + K+ ++ D RD S HE V Sbjct: 994 GLVRRCGEDSYEITELPIKRWTQDYKEWLEENLPTAEKRDTLIADYRDCSSHEEIHFTVK 1053 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEWLVFRRD 356 V L L+ S I N+ D V+ N LEI+ E+ R + Sbjct: 1054 V--GEERVERPEREGLEKYFKLKSSLSI-TNLTLFDPHGRVQRYANELEIIKEFAPIRLE 1110 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRF--------- 407 RR Y L + K IL L L + II N + K AL+ Sbjct: 1111 FYHRRKAYCLAMLEKARRILSNRLRFILAVVNGELIINN--KRKKALIEELFSQGYDPMK 1168 Query: 408 -------------------------------------GLTETQAEAILELKLRHLAKLEE 430 G T + +L + + L + Sbjct: 1169 EIEDAANAGIRAALKRDVIVDDEALAEGGEEEEEIVAGCTAKHYDYLLGMPMWSLTLEKV 1228 Query: 431 MKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 +RGE + E E ++L+ + L K++L A Sbjct: 1229 EDLRGEMRQKELELEELRH-----TSVQTLWKRDLDAL 1261 >UniRef50_P41001 DNA topoisomerase 2 n=10 Tax=Eukaryota RepID=TOP2_PLAFK Length = 1398 Score = 341 bits (874), Expect = 8e-92, Method: Composition-based stats. Identities = 102/530 (19%), Positives = 202/530 (38%), Gaps = 69/530 (13%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + L+ ++F + YS Y +R++P I DG KP QR+++Y + L K + Sbjct: 713 KEKDLSYYDFVNKELIYYSRY-DTERSIPNIMDGWKPGQRKVLYGCFKRNLRNECKVAQL 771 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRY 120 + + YH HG+S+ + ++ MAQ F S ++ G +G+ + K +A RY Sbjct: 772 VGYIAE-HSAYHHHGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARY 830 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 ++L+ + + +E ++ N +G EP+ +P IL+NG GI G ++ I Sbjct: 831 IFTKLASSTRSIFNEYDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFI 889 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 P +N +++ I++ P P + I + G ++ Sbjct: 890 PNYNYKDIIDNIKRYINKE-------------PLIPMVPWYKDFKGRIESNGKTGYETIG 936 Query: 241 MRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 + + K ++ + I+ LP + E + + ++K ++ D D S HE+ + + Sbjct: 937 I--INKIDNDTLEITELPIKKWTQDYKEFLEELLTDEKHQLILDYIDNSSHEDICFTIKM 994 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEWLVFRRDT 357 + ++ L L+ + NM D ++ L+IL E+ R Sbjct: 995 DPAKLQKAEE--EGLEKVFKLKSTLTT-TNMTLFDPNLKLQRYSTELDILKEFCYQRLKA 1051 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVI--------------------------- 390 R +Y + K+ K I+ L I Sbjct: 1052 YENRKSYLISKLEKEKRIISNKTKFILAIVNNELIVNKKKKKVLVEELYRKGYDPYKDIN 1111 Query: 391 ----------EIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSEL 440 E++ D P+ G+T + +L + + L + + + E Sbjct: 1112 KIKKEEIFEQELLDAADNPEDNEEIIAGITVKDYDYLLSMPIFSLTLEKVEDLLTQLKEK 1171 Query: 441 EKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMS 490 E+E + L+ I + + K+++ +A R L REE+ Sbjct: 1172 ERELEILRNIT-----VETMWLKDIEKVEEAIEFQRNVELSNREESNKFK 1216 >UniRef50_B7XIW3 DNA topoisomerase 2 n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XIW3_ENTBH Length = 1159 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 102/484 (21%), Positives = 193/484 (39%), Gaps = 67/484 (13%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 + + +F + +SM + R++P + DGLKP QR+++++ + L K + Sbjct: 644 NITVRDFVNKELILFSMADNI-RSIPSVIDGLKPGQRKVIFSCFKRNLKTEIKVAQLVGY 702 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPD-DPKSFAAMRYTES 123 V + YH HG+++ ++ +A F S L+ G +G+ K A+ RY + Sbjct: 703 VSE-HSAYH-HGEASLAATIINLAHDFVGSNNINLLLPLGQFGSRLLGGKDSASPRYIFT 760 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 L+ S L+ E + D + EP +P +L+NGT GI G +T+IP H Sbjct: 761 NLNPLSRLIFHEHDIPILE-SQIEDNLVIEPTYYVPIIPMVLVNGTDGIGTGWSTNIPNH 819 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSV-RMR 242 N ++ + L++ + E+ Y N +G++ ++ Sbjct: 820 NPLDLIKNIKRLLNNQEPE------------------------EMIPYYRNYKGTITKIN 855 Query: 243 A---------VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHEN 293 A + + LP V E + + + ++ +D S + Sbjct: 856 AGKYISCGKVFENINKKEINVVELPIGVWTQAYKEYLDQAIADN---VIKSFKDYSTDKT 912 Query: 294 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEW 350 L+ MN+ ++ L S N NM+ D +K N LEIL ++ Sbjct: 913 IDILIH------------MNNNEFSSKLTTSISTN-NMVCFDRNGKIKKYHNTLEILKDF 959 Query: 351 LVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPAL-MSRFGL 409 R + +R YRL+ + L+ L+ + + II + L + R Sbjct: 960 YEVRLEFYNKRKIYRLKLLADELNKLKNKVRFIEGVITGSIIITQRPLNEIILELERKEF 1019 Query: 410 TE-TQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 T E +L++K+ L K + K+R E + E ++L+ + + NL ++L Sbjct: 1020 TRYDNYEYLLDMKISSLTKEKINKLREEYNNKNIEYNELKN-----KSIKNLWFEDLDKF 1074 Query: 469 AQAY 472 + Y Sbjct: 1075 EKEY 1078 >UniRef50_C9S837 DNA topoisomerase 2 n=2 Tax=Sordariomycetes RepID=C9S837_VERA1 Length = 1688 Score = 339 bits (869), Expect = 3e-91, Method: Composition-based stats. Identities = 114/568 (20%), Positives = 220/568 (38%), Gaps = 78/568 (13%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 + + +F + +SM M R++P + DGLKP QR++++A + L K + A Sbjct: 730 KSITYDDFVNRELILFSMADNM-RSIPSVLDGLKPGQRKVMFACFKRNLTKDQKVVELAG 788 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 122 V + YH HG+ + + ++ +AQ F S ++ GN+G+ A+ RY Sbjct: 789 YVSEK-AAYH-HGEMSLQQTIIGLAQNFVGSNNVNCLEPSGNFGSRLAGGSDAASPRYIH 846 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +RLS ++ + S L + + V DG EPK+ +P +L NG GI G +T IP Sbjct: 847 TRLSPFARKIFSVLDEPNLE-VQMEDGKPIEPKVYAPIIPMVLCNGADGIGTGWSTSIPN 905 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPT-EAEIITSRAEIRKIYENGRGSVRM 241 ++ E+ +A + + + + G + T + ++ + Sbjct: 906 YHPMEIVRAIKRRMGRLDSDDTE------GKPFETMMPWFRGWKGTPEPAEKD---RYKF 956 Query: 242 RAVWKKEDGA--VVISALPHQVSGARVLEQIAAQMRNKKLP-MVDDLRDESDHENPTRLV 298 +++ +D ++I LP ++ ++ + K P + D ++ +DH+N ++ Sbjct: 957 NGIYETDDKTGEIIIKELPIRMWTDDFKAKLEEVISGAKGPAWIKDYKEFNDHKNVNFVI 1016 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEWLVFRR 355 + + D+ + + L K + N++ D ++ + +IL E+ V+R Sbjct: 1017 QLDEKHYKDIHKTHEGIMDRFKLNKQVATS-NLVAFDSTGRIRKYEKVEDILEEFYVYRL 1075 Query: 356 DTVRRRLNYRLE---------KVLKRL--HILEGLLV---------AFLNIDEVIEIIRN 395 D R + L K R I++G L+ D E Sbjct: 1076 DMYSARKKHWLGVYHSDYRKLKNQARFIQEIIDGELIVSKKRKPVLVQELRDRKYEAFPK 1135 Query: 396 EDEPKPALMSRFGLT-----------ETQAEAILELKLRHLAKLEEMKIRGEQSELEKER 444 D K A + + +L L + L LE + S + K++ Sbjct: 1136 NDGKKQATTEEEDMDASDNEDDSVGGAADYDYLLSLPIWSLT-LER--LERLNSAIMKKK 1192 Query: 445 DQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVL 504 + +LA K +L ++L + E + D + S+ + Sbjct: 1193 GEHDALLAQSEK--DLWCQDLDEFTE-------------EWEAQLEMDDKIQSK-----I 1232 Query: 505 SQMGWVRSAKGHDIDAPGLNYKAGDSFK 532 ++MG RS K KA D F+ Sbjct: 1233 NRMGRRRSRKIGAGGGKVSRNKADDDFE 1260 >UniRef50_O51066 DNA topoisomerase 4 subunit A n=20 Tax=Borrelia RepID=PARC_BORBU Length = 626 Score = 338 bits (866), Expect = 7e-91, Method: Composition-based stats. Identities = 116/486 (23%), Positives = 219/486 (45%), Gaps = 45/486 (9%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 + + ++ +L YS YVI DRA+ + DG KPVQRRI++++ E+ F K A V Sbjct: 1 MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 G+ + KYHPHGD++ YEA+V +A + ++ QGN+G +A RY E RL+ Sbjct: 58 GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 + +L + + ++DG EP + PA++P IL+ G+ GIAVGMA I PHN E Sbjct: 113 LAFDVL--YSKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK- 246 + A + + + PD+PT + + Y +G G V +RA + Sbjct: 171 ILNAVKSELLGESYDI--------YPDFPTGGIVDVNE------YADGNGKVLVRAKIET 216 Query: 247 KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRV 306 ++ +VI LP + ++ I +R + V + D + + + V Sbjct: 217 IDEKTIVIRELPFGETTESLISSIEKAIRKNYIK-VSSINDFTAENVA---IELSLPRGV 272 Query: 307 DMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRL 366 +V+ L+ T+ + S +NL ++ + P V + +++ + ++ L + Sbjct: 273 YASEVIEKLYHYTNCQISISVNLLLLS-ERYPVVYTIKDLIKFHAAHLQKILKMELELQK 331 Query: 367 EKVLKRLHILEGLLVAFL-NIDEVIEIIRNEDEP-----KPALMSRFGLT----ETQAEA 416 K+L+++ + I +++E I E+ L + + + E Sbjct: 332 SKILEKIFYKTLEQIFIEKKIYKLLETISKEENILSIILSEVLRHKESFSREVLKEDVEN 391 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD- 475 +L++ +R ++ + K + L KE L+ I ++ + + Y + Sbjct: 392 LLKIPIRKISLFDIDKNSKDIKILNKE---LKSINSNISSIRGYSINFIDLLLAKYSKEH 448 Query: 476 -RRSPL 480 R++ + Sbjct: 449 QRKTKI 454 >UniRef50_Q0QCM0 GyrA (Fragment) n=297 Tax=Bacteria RepID=Q0QCM0_ECOLX Length = 211 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 112/212 (52%), Positives = 157/212 (74%), Gaps = 4/212 (1%) Query: 1 MSDMAERLA---LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 57 MSD+A + + E +++YL+Y+M VI+ RALP + DGLKPV RR++YAM+ LG + + Sbjct: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60 Query: 58 AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 117 +KKSAR VGDV+GKYHPHGD A Y+ +V MAQPFS RY LVDGQGN+G+ D S AA Sbjct: 61 KAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAA 119 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 MRYTE RL+K + L+++L + T D+V N+DGT + P ++P ++PN+L+NG++GIAVGMA Sbjct: 120 MRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMA 179 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDI 209 T+IPPHNL EV +A ID +++ L++ Sbjct: 180 TNIPPHNLTEVINGCLAYIDDEDISIEGLMEH 211 >UniRef50_D0NA12 DNA topoisomerase 2 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NA12_PHYIN Length = 1505 Score = 336 bits (861), Expect = 2e-90, Method: Composition-based stats. Identities = 104/504 (20%), Positives = 200/504 (39%), Gaps = 63/504 (12%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 + + EF + +SM + R++P + DG KP QR++++ + L A K + A Sbjct: 738 VDEMGYTEFVNKELILFSMADNI-RSIPSVMDGFKPSQRKVLFCCFKRNLRAELKVAQLA 796 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYT 121 V + YH HG+++ +V MAQ F S L+ G +G K A+ RY Sbjct: 797 GYVSE-HSAYH-HGEASLQGCIVNMAQDFVGSNNIHLLSPIGQFGTRLMGGKDAASARYI 854 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 + L + + L+ L ++ + DG EP+ +P +L+NG+ GI G ++ +P Sbjct: 855 FTNLEQLTRLIYHPLDNDCLKYL-SEDGQSIEPEWYIPIIPMVLVNGSDGIGTGWSSSVP 913 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 +N ++ + +I+ + P Y I +A R G+ + Sbjct: 914 NYNPLDIIKGLRQMINGEEIAPLT-------PWYRGFTGHIVEKANSRG---TDTGNYIV 963 Query: 242 RAVWKK-EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 + +++ +D +V+S LP + + + + + + + +D + + + Sbjct: 964 QGLYEVTDDSTLVVSELPVKSWTQTYKQFLEGLLDAGTIKDFKE--NHTDVKVLFTITME 1021 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEWLVFRRDT 357 P+ D+ + + LE S + NM D +K N EI++E+ R + Sbjct: 1022 PK-ALSDVTKAPGGIVKKFKLESSLSTS-NMHLFDAAGHIKKYENPKEIMAEFYGIRLEY 1079 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRF---GLTETQA 414 RR L+K+ ++ +L L + E ++ N K L+ G + + Sbjct: 1080 YGRRKKAMLQKLQDQIKLLSNKARFVLAVVEGKLVVNNRK--KQELLEELMAEGYDQIVS 1137 Query: 415 ----------------------------EAILELKLRHLAKLEEMKIRGEQSELEKERDQ 446 + +L +K+ L K K+R E E E E Sbjct: 1138 KTKKKPDNEDSNESEDEEPNVADVSRGYDYLLSMKIWSLTKERVDKLRAELQEREHEYSV 1197 Query: 447 LQGILASERKMNNLLKKELQADAQ 470 L+G R + +L +L A + Sbjct: 1198 LEG-----RTVQDLWLTDLDALEK 1216 >UniRef50_Q9Y8G8 DNA topoisomerase 2 n=79 Tax=cellular organisms RepID=TOP2_PENCH Length = 1587 Score = 336 bits (861), Expect = 3e-90, Method: Composition-based stats. Identities = 92/507 (18%), Positives = 188/507 (37%), Gaps = 68/507 (13%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 +++ +F + +SM + R++P + DGLKP QR+++Y L K + A Sbjct: 718 VDKITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTCFRRNLKKDMKVVELA 776 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYT 121 V + HG+ + + +V +AQ F S ++ GN+G+ A+ RY Sbjct: 777 GHVSGTTA--YQHGEGSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGADCASARYI 834 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 +RL ++ + + + DG E ++ +P IL+NG GI G ++ P Sbjct: 835 YTRLWPFARRVFHNHDDPLLTYNED-DGAKIEQEVYVPVVPMILINGADGIGTGWSSSTP 893 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 +N ++ + ++D P P + E+ + G+ + Sbjct: 894 NYNPEDIVENLKRMMDGE-------------PLKPMQPWFRGFTGEVTAV---GQDRFKF 937 Query: 242 RAVWKK-EDGAVVISALPHQVSGARVLEQIAAQMRNKKLP-MVDDLRDESDHENPTRLVI 299 + K+ D V I+ LP + +++ ++ +K P + D +D + H ++ Sbjct: 938 SGIIKETGDKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTKVHFVIQ 997 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK--NLLEILSEWLVFRRDT 357 + + + L L K+ N++ D K ++ +I+ E+ R Sbjct: 998 MDEKHMKTA--IAEGLEEKFKLSKTMTT-TNLVAFDPERITKYASVEDIMKEFYAVRLKY 1054 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP------KPALMSRFGLTE 411 RR Y+L ++ K L L I + +I + + K F + Sbjct: 1055 YERRKQYQLSEMQKELDKLSNQARFVQMIIDGKLVISKKKKAVLVAELKEKDFKPFPKVK 1114 Query: 412 TQAEA---------------------------ILELKLRHLAKLEEMKIRGEQSELEKER 444 +A +L + + L + K+R + + E E Sbjct: 1115 EAVKAGETEPVVEEEEDSESGDTEVLSNSYDYLLGMPIWSLTQERVEKLRRQIGDKELEI 1174 Query: 445 DQLQGILASERKMNNLLKKELQADAQA 471 D L + + + K++L+ Sbjct: 1175 DTLIKLSKED-----IWKRDLEDFINE 1196 >UniRef50_P11388 DNA topoisomerase 2-alpha n=47 Tax=Eukaryota RepID=TOP2A_HUMAN Length = 1531 Score = 333 bits (853), Expect = 2e-89, Method: Composition-based stats. Identities = 101/516 (19%), Positives = 186/516 (36%), Gaps = 76/516 (14%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 L ++F + +S +R++P + DGLKP QR++++ + K + A +V Sbjct: 693 LTYNDFINKELILFSNSDN-ERSIPSMVDGLKPGQRKVLFTCFKRNDKREVKVAQLAGSV 751 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTESR 124 + + YH HG+ + ++ +AQ F S L+ G +G K A+ RY + Sbjct: 752 AE-MSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIFTM 809 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 LS + LL T ++ + D EP+ +P +L+NG GI G + IP + Sbjct: 810 LSSLARLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPNFD 868 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 +RE+ L+D + P P+ + E+ G V + Sbjct: 869 VREIVNNIRRLMDGEE----------PLPMLPSYKNFKGTIEELAPNQYVISGEVAI--- 915 Query: 245 WKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKL---PMVDDLRDESDHENPTRLVIVP 301 + IS LP + EQ+ M N P++ D R+ +V + Sbjct: 916 --LNSTTIEISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVVKMT 973 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEWLVFRRDTV 358 + ++V L L+ S N M+ D +K +L+IL ++ R Sbjct: 974 EEKLAEAERV--GLHKVFKLQTSLTCNS-MVLFDHVGCLKKYDTVLDILRDFFELRLKYY 1030 Query: 359 RRRLNYRLEKV-LKRLHILEGLLVAFLNIDEVIEIIRNEDEP--KPALMSRFGLTETQA- 414 R + L + + + ID I I + K + + +A Sbjct: 1031 GLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDPVKAW 1090 Query: 415 -----------------------------------EAILELKLRHLAKLEEMKIRGEQSE 439 +L++ L +L K ++ ++ ++E Sbjct: 1091 KEAQQKVPDEEENEESDNEKETEKSDSVTDSGPTFNYLLDMPLWYLTKEKKDELCRLRNE 1150 Query: 440 LEKERDQLQGILASERKMNN----LLKKELQADAQA 471 E+E D L+ S + +EL+A Sbjct: 1151 KEQELDTLKR--KSPSDLWKEDLATFIEELEAVEAK 1184 >UniRef50_A5E7X7 DNA topoisomerase 2 n=4 Tax=Saccharomycetaceae RepID=A5E7X7_LODEL Length = 1492 Score = 332 bits (852), Expect = 3e-89, Method: Composition-based stats. Identities = 92/412 (22%), Positives = 173/412 (41%), Gaps = 33/412 (8%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 + + +F + +SM + R++P + DGLKP QR+I+Y + L K + A Sbjct: 748 EIPISDFINKELILFSMSDNV-RSIPSMLDGLKPGQRKILYGCFKRKLKNEIKVAQLAAY 806 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTES 123 V DV YH HG+ + + ++ MAQ F S L+ G +G+ K AA RY + Sbjct: 807 VADV-SSYH-HGEQSLVQTIIAMAQNFVGSNNINLLKPNGAFGSRATGGKDAAAARYIFT 864 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 L++ + + +E +++ + D + EP+ LP IL+NG GI G +T+IP + Sbjct: 865 ELNEITRTIFNEADDPLLNYLQD-DESTVEPQWYLPVLPMILVNGADGIGTGWSTNIPSY 923 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 N ++ L+ +++ +G +I K+ G ++ Sbjct: 924 NPLDIVANLRRLMRGEPM--EEMNPWYKG-----------WYGDIEKV---GPQKFKISG 967 Query: 244 VWK-KEDGAVVISALPHQVSGARVLEQ-IAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 + +D + IS +P + V E +A K + + D+ E H R V V Sbjct: 968 RIEQIDDNTIEISEVPVKTWTNTVKEFLLAGLGNEKTVQWIKDM--EEQHTTSIRFV-VK 1024 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAV---KNLLEILSEWLVFRRDTV 358 S+ + L L + + NM+ D + ++L+I+ ++ R + Sbjct: 1025 LSDAEMAKALSVGLLEKFKLVSTISL-ANMVAFDPHGRIKKYLDVLDIVKDFYFVRLEYY 1083 Query: 359 RRRLNYRLEKVL-KRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGL 409 +R N+ LE + K I E + ID+ + + + + ++ Sbjct: 1084 EKRKNHMLEILQHKHSMISEQARFIKMIIDKQLSVANKKKKELIGILEANKF 1135 >UniRef50_Q02880 DNA topoisomerase 2-beta n=175 Tax=Eukaryota RepID=TOP2B_HUMAN Length = 1626 Score = 332 bits (851), Expect = 3e-89, Method: Composition-based stats. Identities = 94/513 (18%), Positives = 187/513 (36%), Gaps = 76/513 (14%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 + L ++F + +S +R++P + DG KP QR++++ + K + A Sbjct: 712 KHLTYNDFINKELILFSNSDN-ERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLAG 770 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTE 122 +V + + YH HG+ A +V +AQ F S L+ G +G K A+ RY Sbjct: 771 SVAE-MSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 828 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 + LS + LL + ++ + D EP+ +P +L+NG GI G A +P Sbjct: 829 TMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 887 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 ++ RE+ ++D P P + I+++ G+ + Sbjct: 888 YDAREIVNNVRRMLDGLD----------PHPMLPNY---KNFKGTIQEL---GQNQYAVS 931 Query: 243 A-VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLP---MVDDLRDESDHENPTRLV 298 ++ + V I+ LP + EQ+ M N ++ D ++ +V Sbjct: 932 GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTTVKFVV 991 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEWLVFRR 355 + + L L+ + N M+ D +K + +IL E+ R Sbjct: 992 KMTEEKLAQAEA--AGLHKVFKLQTTLTCNS-MVLFDHMGCLKKYETVQDILKEFFDLRL 1048 Query: 356 DTVRRRLNYR------------------LEKVLKRLHILEG----LLVAFLNIDEVIEII 393 R + LEK+ ++ I L+ + + + Sbjct: 1049 SYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPV 1108 Query: 394 RNEDEPKPALMSRFGLTETQAE---------------AILELKLRHLAKLEEMKIRGEQS 438 + E + T+ Q + IL + L L K + ++ ++ Sbjct: 1109 KAWKEAQEKAAEE-DETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRD 1167 Query: 439 ELEKERDQLQGILASERKMNNLLKKELQADAQA 471 +E + L+ + ++L K++L A + Sbjct: 1168 AKGREVNDLK-----RKSPSDLWKEDLAAFVEE 1195 >UniRef50_D1ZCL6 DNA topoisomerase 2 n=6 Tax=Sordariomyceta RepID=D1ZCL6_SORMA Length = 1915 Score = 330 bits (847), Expect = 1e-88, Method: Composition-based stats. Identities = 99/506 (19%), Positives = 199/506 (39%), Gaps = 63/506 (12%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 E+++ +F + +SM + R++P + DGLKP QR++++ + L K + A Sbjct: 790 EKISYTDFVNRELILFSMADNI-RSIPSMVDGLKPGQRKVLFGCFKQNLIHDQKVVELAG 848 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTE 122 V YH HG+ + + +V +AQ F S ++ GN+G+ A+ RY Sbjct: 849 YVSKE-AAYH-HGEQSLQQTIVGLAQNFVGSNNINCLEPSGNFGSRLSGGSDAASARYIH 906 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +RLS + + L + ++ + DG L EPK+ LP +L+NG GI G +T IP Sbjct: 907 TRLSPLARKIFHPLDEPNLEFQFD-DGKLIEPKVYAPILPMVLVNGADGIGTGWSTSIPN 965 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 ++ ++ + + + + + + P P + +G + Sbjct: 966 YHPLDIVENLKRRMGRDSSGDGE-----EKPFEPMTPWFRGWKGTPEP---DGPNKFKFN 1017 Query: 243 AVWKK---EDGAVVISALPHQVSGARVLEQIAAQMRNKKLP-MVDDLRDESDHENPTRLV 298 + + V ++ LP ++ ++ +R K P + D ++ +DH+ ++ Sbjct: 1018 GIVEVNPQNPNEVDVTELPIRMWTDDFKSKLEEIIRGDKGPSWIKDYKEYNDHQTVHFII 1077 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEWLVFRR 355 + + + L L K+ N++ D R + N EI+ E+ +R Sbjct: 1078 ALEEKQMSSA--LRDGLIEKFKLTKTVAT-TNLVAFDTRGKIYKYENPQEIMEEYYHYRL 1134 Query: 356 DTVRRRLNYRLE-------KVLKRLH-----ILEGLLVAFLNIDEVIEII---------- 393 + R + L+ K+ + I L+VA +++ + Sbjct: 1135 NLYGERKKHWLKVYHADYRKLQNQYRFISEIIENKLIVAKKKKSVLVQELRERKYEAFPP 1194 Query: 394 ----RNEDEPKPALMSRFGLTETQA-------EAILELKLRHLAKLEEMKIRGEQSELEK 442 RN P L + E A + +L + + L K++ + + + Sbjct: 1195 KSDGRNVKSPDEELGAAENEDEEDAVGGARDYDYLLSMPIWSLTFERLDKLKQQIAAKKA 1254 Query: 443 ERDQLQGILASERKMNNLLKKELQAD 468 E D+L + + L K+L A Sbjct: 1255 EYDELDALSEKD-----LWCKDLDAF 1275 >UniRef50_Q4RIW2 DNA topoisomerase 2 (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4RIW2_TETNG Length = 1568 Score = 329 bits (845), Expect = 2e-88, Method: Composition-based stats. Identities = 97/535 (18%), Positives = 191/535 (35%), Gaps = 94/535 (17%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 A L+ ++F + +S +R++P + DGLKP QR++++ + K + Sbjct: 824 QARHLSYNDFINKELILFSNSDN-ERSIPSLVDGLKPGQRKVLFTCLKRNDKREVKVAQL 882 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRY 120 A +V + + YH HG+ A +V +AQ F S ++ G +G + K A+ RY Sbjct: 883 AGSVAE-MSAYH-HGEQALMMTIVNLAQNFVGSNNLNILQPLGQFGTRINGGKDAASPRY 940 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 + LS ++LL + ++ + D EP+ +P +L+NG GI G A I Sbjct: 941 IFTMLSPLAKLLFPAVDSNLLKFLYD-DNQKVEPEWYIPIIPMVLVNGAEGIGTGWACKI 999 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 P +++RE+ ++ + + Q+L +G + I ++ G+ Sbjct: 1000 PNYDVREIVNNINRMLSRQEPL--QMLPSYKG-----------FKGVIHEL---GQNQYL 1043 Query: 241 MRAVWK-KEDGAVVISALPHQVSGARVLEQIAAQM---RNKKLPMVDDLRDESDHENPTR 296 + + V I+ LP + E + M +K ++ D ++ Sbjct: 1044 VSGEVSVIDKNTVEITELPVRTWTQAYKESVLEPMLQGSDKTPALISDYKEYHTDTTVKF 1103 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRP------------AVKNLL 344 LV + + L L+ S N + RP +++ Sbjct: 1104 LVRMSEEKLAQAEA--AGLHKVFKLQSSLTCNSMVTACFHRPEHVLFDHMGCLKRYESVQ 1161 Query: 345 EILSEWLVFRRDTVRRR------------------LNYRLEKVLKRLHIL----EGLLVA 382 +IL E+ R + R + LEK+ ++ I L+ Sbjct: 1162 DILKEFFELRLHYYKLRRDWLVGSLGAEAAKLSNQARFVLEKIEGKISIENKSKRELIRM 1221 Query: 383 FLNIDEVIEIIRNEDEPKPALMSRF--GLTETQAE-----------------------AI 417 + + + + + RF QA+ I Sbjct: 1222 LVQKGFESDPVAAWTRAQEKELRRFQSKREPRQAQEEDEGNDSDSSLDSGSSSGPNFNYI 1281 Query: 418 LELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNN----LLKKELQAD 468 L + L L K + ++ ++ E ++LQ S + + +EL+ Sbjct: 1282 LNMPLWCLTKEKVEELLKQRDLKRGELNELQR--KSPEDLWKEDLAVFVEELEKL 1334 >UniRef50_Q6PUA3 DNA topoisomerase 2 n=4 Tax=Tetrahymena thermophila RepID=Q6PUA3_TETTH Length = 1662 Score = 329 bits (844), Expect = 3e-88, Method: Composition-based stats. Identities = 100/516 (19%), Positives = 199/516 (38%), Gaps = 82/516 (15%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 + L +F +N+S R++P + DGLKP QR+I++A + L K + + Sbjct: 650 KHLTYKDFVNKELINFSNSDN-ARSIPSLCDGLKPGQRKILFACFKRNLKNEIKVAQLSG 708 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTE 122 V + YH HG+ + +V MAQ F + + G +G+ K A+ RY Sbjct: 709 YVAE-HSAYH-HGEQSLESTIVGMAQSFVGTNNINYLMPIGQFGSRNMGGKEAASARYIH 766 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 + L+K + + E ++ + +G EP +P LLNG GI G +T IP Sbjct: 767 TCLNKITRCVFPEPDDHILYYLED-EGQQVEPIYYLPIIPTALLNGADGIGTGWSTSIPC 825 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 +N RE+ ++++ + V D + + +I N + + + Sbjct: 826 YNPRELVD-----------SIEKRMMGVPFTDL-----LPWYKGFTGEISNNEKSQITVS 869 Query: 243 AVWK-KEDGAVVISALPHQVSGARVLEQIAAQMR--NKKLPMVDDLRDESDHENPTRLVI 299 + + + I+ LP + + ++ K P ++D+++ R+ Sbjct: 870 GKYHLVNETTIEITELPIKKWIRDYKNFLEEKLESTKDKDPEIEDIKEY---HAGNRVHF 926 Query: 300 VPRSNRVDMDQVM-NHLFATTDLEKSYRINLNMIGLDGRPAV---KNLLEILSEWLVFRR 355 V + + M++V + L+ + NM+ + + N+ EI+ E+ R Sbjct: 927 VVKMSEKQMEKVQREGIDKYFKLQSTIPT-TNMVLFNHEGKLTRYANICEIMEEFYEVRL 985 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGL------ 409 + +RR Y + K+ + L IL L + + E IR + + L+ + Sbjct: 986 NAYKRRKEYLVSKIERDLEILSNKKRFILAV--INESIRVRNAKRKDLIKELSVQGYVQM 1043 Query: 410 --------------------------------TETQAE---AILELKLRHLAKLEEMKIR 434 E A+ +L L + L + +I+ Sbjct: 1044 KDMPKIKSSKLTSQLEQEQNQDSNEENFETNPNEINAKEYNYLLSLPMWSLTYEKVEEIK 1103 Query: 435 GEQSELEKERDQLQGILASERKMNNLLKKELQADAQ 470 EQ + E D+L ++ ++ K++L+ + Sbjct: 1104 QEQKNKQDELDKLVA-----TEVIDIWKEDLKNFIE 1134 >UniRef50_C1E5N4 DNA topoisomerase 2 n=1 Tax=Micromonas sp. RCC299 RepID=C1E5N4_9CHLO Length = 1459 Score = 329 bits (843), Expect = 3e-88, Method: Composition-based stats. Identities = 91/502 (18%), Positives = 184/502 (36%), Gaps = 69/502 (13%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 + + +F + +S +M R++P + DG KP QR+++++ + L + K + + Sbjct: 702 DDVRYDDFINKELILFSRADLM-RSIPSVVDGFKPSQRKVLFSCFKRKLKSDIKVAQLSG 760 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTE 122 V + YH HG+++ +V +AQ F S L+ G +G K A+ RY Sbjct: 761 YVSE-HSAYH-HGEASLASTIVGLAQDFVGSNNVNLLVPSGQFGTRLQGGKDHASPRYIF 818 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +RL+ ++ E D++ DG + EP+ LP +L+NG GI G +T IP Sbjct: 819 TRLAPICRVIFPECDDALLDYLDE-DGQVIEPEHYLPILPLVLVNGADGIGTGWSTSIPN 877 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 N R++ ++D T P Y + I + G + Sbjct: 878 FNPRDIVANIRRILDDECTERMH-------PWY------RNFKGTIEEEIVKGEIRYNIT 924 Query: 243 AVWKK-EDGAVVISALPHQVSGARVLEQIAAQMRNKKL---PMVDDLRDESDHENPTRLV 298 ++ ++ +VI+ LP + + + + K+ P + D ++ +V Sbjct: 925 GKYEIVDETTLVITELPLRSWTTDYKDFLENMLSPKEKNAQPFITDYKEHHTDTTVHFIV 984 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRP---AVKNLLEILSEWLVFRR 355 + N + + + L + NM D + + I+ ++ R Sbjct: 985 TMTPENMAKAQK--DGIEKKFKLCAKVSTS-NMHAFDEKGGITKYSSPEAIMEAFVPLRL 1041 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRF-------- 407 D RR + + L + + L + + I + K L+ Sbjct: 1042 DAYARRRAMLIRQAEFELKRMSNKVRFILAVVDGEMTIGRKK--KSVLIEELEAAGYDKM 1099 Query: 408 --------------------GLTETQA---------EAILELKLRHLAKLEEMKIRGEQS 438 ++E A + +L + L +L + + ++ EQ Sbjct: 1100 PKTAKAAAAADAEPAESGLSDISEEGAPAPADGASYDYLLSMPLWNLTQEKVDELVEEQR 1159 Query: 439 ELEKERDQLQGILASERKMNNL 460 E ++L G + + +L Sbjct: 1160 VKTAEVEELHGTTDKQLWIRDL 1181 >UniRef50_Q8SS63 DNA topoisomerase 2 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SS63_ENCCU Length = 1144 Score = 328 bits (842), Expect = 4e-88, Method: Composition-based stats. Identities = 94/475 (19%), Positives = 182/475 (38%), Gaps = 50/475 (10%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 ++++ +F + +SM + R++P + DGLKP QR+++++ + L + K + Sbjct: 641 TQISISDFVNKELILFSMADNI-RSIPSLVDGLKPGQRKVIFSCFKRNLRSEIKVAQLVG 699 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTE 122 V + YH HG+ + +V +AQ F S L+ G +G+ K A+ RY Sbjct: 700 YVSE-QSAYH-HGEQSLCSTIVNLAQDFVGSNNINLLLPIGQFGSRLQGGKDAASPRYIF 757 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 + LS + ++ +E +++ N D EP+ +P +L+NG GI G +T IP Sbjct: 758 TSLSPLTRMIFNENDDAILNYL-NDDNFSIEPEFYVPIIPMVLVNGAEGIGTGWSTSIPN 816 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 N +V + +I +++V R I KI G G ++ Sbjct: 817 FNPVDVVENIRRMIRGEDP-----VEMVPY--------YRNFRGTIEKI---GEGKFQVS 860 Query: 243 AVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 +++ D + I+ LP E + + ++ + E Sbjct: 861 GIYE-GDMDLEITELPVGTWTLNYKEFLESLVQAGVARDFKEYHTE-------------- 905 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNL---LEILSEWLVFRRDTVR 359 V ++ + L + +N NM+ D +K EIL E+ R Sbjct: 906 -KTVSFTVKLSKPVSNLKLNSTITVN-NMVCFDENLRIKKYATPQEILKEFYGVRLRYYL 963 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA--LMSRFGLTETQAEAI 417 R L+ + + L LE + + +I + + L SR E + Sbjct: 964 IRKENMLKVMREELEKLENKVRFIKEVSMGELVISRRRKGEVIFDLESRGYARADDYEYL 1023 Query: 418 LELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 L + + L ++ E + K + ++ K L ++L+ + Y Sbjct: 1024 LSMSILSLTVERIERLSNEHA---KRLSEYNQLMGKTPK--ELWLEDLEVFEKEY 1073 >UniRef50_D2UZM0 DNA topoisomerase II n=1 Tax=Naegleria gruberi RepID=D2UZM0_NAEGR Length = 1457 Score = 327 bits (840), Expect = 6e-88, Method: Composition-based stats. Identities = 112/508 (22%), Positives = 204/508 (40%), Gaps = 75/508 (14%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 + ++ +F + + +S R++P I DGLKP QR+I+++ + L K + A Sbjct: 692 KEISYTDFIDKELILFSKA-DCKRSIPSIVDGLKPGQRKILFSCFKRNLKKEIKVAQLAG 750 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTE 122 V + YH HG+ + +V MAQ F S L+ G +G K A+ RY Sbjct: 751 YVSE-QSAYH-HGEDSLNGTVVNMAQNFVGSNNINLLYPGGMFGTRLQGGKDSASPRYIF 808 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 ++LS+ + + + +++ + DG EP+ LP +L+NG+ GI +T+I Sbjct: 809 TKLSEITRYIFPKADDPVLEYLDD-DGQSIEPRFYVPILPMVLVNGSEGIGTAWSTNIET 867 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 +N ++ + ALI + + +G D E + ++ + + + E Sbjct: 868 YNPVDIVEGLKALIKGEEAK--EFHPWYKGFDGIIE-RLAPTKWQTKGVIE--------- 915 Query: 243 AVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 K +D + IS LP ++ E++ M ++ VDD R+ +H + T V Sbjct: 916 ---KIDDNTLDISELPIRIWTESFKERLEKMMEAQQ---VDDFRE--NHTDVTVSFTVKM 967 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEWLVFRRDTVR 359 +++ D L+ L K + + NM+ +K +L+IL E+ R Sbjct: 968 TDKQMKDAEDAGLYDYFKLFKKFSTS-NMVLFSEEGGIKEYETVLDILKEFYPIRLKFYG 1026 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRF------------ 407 +R Y LEK+ K L IL + ++ + E I+ + K L+ Sbjct: 1027 KRKEYMLEKMKKELEILSNKVRFI--MEVINETIQVKKRKKADLLKELKTKKYSSFPKEK 1084 Query: 408 ------------------------GLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKE 443 LT+ +L + L L + K+ E+ E KE Sbjct: 1085 KIAAAGDIQNEEEEEEEDEEKDVADLTDG-YNYLLSMPLWSLTVEKVKKLEKEKEEKVKE 1143 Query: 444 RDQLQGILASERKMNNLLKKELQADAQA 471 +QL+ K + EL + Sbjct: 1144 VEQLEN-----TKPETMWLSELDEFLEK 1166 >UniRef50_B2ZYK7 Type IIA topoisomerase n=1 Tax=Ralstonia phage RSL1 RepID=B2ZYK7_9CAUD Length = 514 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 135/499 (27%), Positives = 234/499 (46%), Gaps = 36/499 (7%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 +L +F Y V +DR++P + DGLKPVQRRI+++ S++ +F+KSAR G Sbjct: 25 SLKDFGRRNMTIYGTTVNLDRSVPDLYDGLKPVQRRILWSASQV---CRTQFEKSARLTG 81 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 +G YHPHG+SA Y A V M Q S P + G+GN+G+ D AA RYT RLS Y Sbjct: 82 HCMGAYHPHGNSAIYSAAVNMVQHPS---PTLLGKGNFGSMTDG--AAAERYTNVRLSHY 136 Query: 129 SELLLSE--LGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 + + T +VPN+D EP LPA+LPN+LLNG GI VG+ T +P Sbjct: 137 GQTFFDSDYINAETTSFVPNYDDKDVEPVTLPAQLPNVLLNGGEGIGVGITTKLPTFTPE 196 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRA---EIRKIYENGRGSVRMRA 243 V + + K ++ + +++ S+ + ++++ +++ A Sbjct: 197 SVLEVLNRMFKGEKLQAVDFAKTLKY-HHKWGGQLVRSKENQAQWKQMFVGSMANLQFEA 255 Query: 244 VWKKED--GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 V + + IS+ P + ++++ A +P + S ++ P Sbjct: 256 VLDLDRDHKRMTISSWPPGTNLETFMKKVRA------MPECHKCFN-SKGTTTYQIECKP 308 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLN---MIGLDGRPAV------KNLLEILSEWLV 352 N D+ + + T ++++IN+ +DG ++ +++ +W Sbjct: 309 GFNYDQFDKFVEKVRKATMQRQAFKINVTRREAKTVDGVTTFKTEFLALSVPDLILQWCR 368 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTET 412 R + L YR++K + + L+ A +D + + +R D P +L +T Sbjct: 369 MRVALELKSLAYRIKKQEAAIAYSKLLIYAVDKLDLIFKALRQSD-PDASLQKLLKITAE 427 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QA+ IL+L++R L+KL++ K++G E+E QLQ A + L +L A QA Sbjct: 428 QAKQILDLQVRKLSKLDQSKLKGTLKTQEQELKQLQTWQAKPKAQVLL---DLAAVQQAL 484 Query: 473 GDDRRSPLQEREEAKAMSE 491 DR L+E + + + Sbjct: 485 DKDRNFKLKESTQKLTVCD 503 >UniRef50_O41065 A583L protein n=7 Tax=Chlorovirus RepID=O41065_PBCV1 Length = 1061 Score = 325 bits (833), Expect = 5e-87, Method: Composition-based stats. Identities = 98/464 (21%), Positives = 192/464 (41%), Gaps = 45/464 (9%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 + + +F + + +S Y ++R++P + DG KP QR+++Y + L + K + + Sbjct: 630 EVPVPDFIDKELILFSRY-DLERSIPSVVDGFKPSQRKVLYCAFKRNLTSDVKVAQFSGY 688 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTES 123 V + YH HG+ + +V +AQ + S + +G +G+ K A+ RY + Sbjct: 689 VAE-HSAYH-HGEVSLQGTIVNLAQDYVGSNNINWLLPEGQFGSRLQGGKDHASARYIFT 746 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 +L+ + + + ++ + DG EP+ +P+IL+NG++GI G +T+IP + Sbjct: 747 KLNPKTRQVFVDTDDNLLKYLYD-DGDKIEPECYVPIIPSILVNGSSGIGTGSSTNIPSY 805 Query: 184 NLREVAQAAIALIDQPK-TTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 N +++ LI + +G KI E G + Sbjct: 806 NPKDIVDNVKRLISGEDLVEMKPWYKGFKG-----------------KIMETSPGVYVTK 848 Query: 243 AVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 ++ +V+S LP E + + K + + ++D Sbjct: 849 GLYMPNGKTIVVSELPVGKWTHDYKEHLDGLLEKKIISYFREKHSDTDV----------- 897 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNL---LEILSEWLVFRRDTVR 359 ++D V N LE + R + NM D +K L+I+ +W R+D Sbjct: 898 --LFEIDFVGNPNIDILKLETTIR-STNMHAFDPSGKIKKYDTPLDIIRDWFEVRKDLYV 954 Query: 360 RRLNYRLEKVLKRLHILEGL--LVAFLNIDEVIEIIRNEDEPKPALMS-RFGLTETQAEA 416 +R Y LE + R +I + + +N DE+I ++E L F + + + Sbjct: 955 KRKAYLLEDLTHRTNIAQNKHRFITMVNNDEIIINKKHESVISAELEKLNFYKVDGKYDY 1014 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNL 460 +L +++ L ++ E +L KE D L ++ N+L Sbjct: 1015 LLNMRISSLTLERATELEREAVKLNKELDDLSKTTETDMWNNDL 1058 >UniRef50_Q3QZ99 DNA gyrase C-terminal repeat, beta-propeller n=3 Tax=Gammaproteobacteria RepID=Q3QZ99_XYLFA Length = 352 Score = 322 bits (827), Expect = 2e-86, Method: Composition-based stats. Identities = 163/353 (46%), Positives = 234/353 (66%), Gaps = 4/353 (1%) Query: 389 VIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQ 448 +I IIRNEDEPKP L++RFGL++ Q E IL+ KLR LA+LEEM IR EQ L KERD++ Sbjct: 1 MIHIIRNEDEPKPVLIARFGLSDAQTEYILDTKLRQLARLEEMAIRSEQDALTKERDEIN 60 Query: 449 GILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMG 508 IL S+ ++ L+K EL ADA+ +GD RR+PL R+ A+A+ E +++ SEP+T+VLS+ G Sbjct: 61 VILDSDVQLKKLIKDELLADAKTFGDARRAPLVARQAAQAIDESELVASEPMTVVLSEKG 120 Query: 509 WVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568 W+R+AKGHD+D G++Y+ GD AAV+ +S V F+DS GR+Y+ TLPSARG GE Sbjct: 121 WIRAAKGHDVDPSGMSYREGDRLLAAVRTRSTHQVSFLDSEGRAYSTLVHTLPSARGNGE 180 Query: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENA 628 PLTG+ + PGA+ M +D+ ++AS GYGF+ F +L RN+AGKA+I L A Sbjct: 181 PLTGRFSPAPGASFQAMASADNDKLFVLASSHGYGFITRFENLTGRNKAGKAMIHLTPGA 240 Query: 629 HVMPPVVIED-ASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLA 687 VM + D D ++A+T AG +L S+LP+L KGKGNK+I+IP + A + L Sbjct: 241 QVMGLAPLTDVQHDRIVAVTSAGNLLAIAASELPELDKGKGNKLIDIPKTKLAT--ERLV 298 Query: 688 QLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLM-RGLQRIDRVEI 739 + + TL ++ G+R + L ++L+ RG RG L+ R +ID ++I Sbjct: 299 AVIAVASSHTLLLYSGERTMHLSFKDLEAYLDTRGSRGQLLPRSWHKIDTLDI 351 >UniRef50_D2V5K5 DNA topoisomerase II n=1 Tax=Naegleria gruberi RepID=D2V5K5_NAEGR Length = 1135 Score = 321 bits (824), Expect = 4e-86, Method: Composition-based stats. Identities = 102/485 (21%), Positives = 204/485 (42%), Gaps = 45/485 (9%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 ++ + +F N + +S + R++P I DGLKP QR+I++A + L K + A Sbjct: 667 KVTITDFINNELILFSNQNNI-RSIPSIVDGLKPSQRKILFACLKRDLKDEIKVAQLAGY 725 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTES 123 V + YH HG+ + Y + MAQ F + PL+ G +G A+ RY + Sbjct: 726 VSE-HSAYH-HGEQSLYGTITSMAQDFVGANNIPLLYPSGQFGTRLQGGDDAASARYIYT 783 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 RL+K + L+ + D+ DG + EPK +P +L+NG G+ G +T IP Sbjct: 784 RLNKLTRLIFLKEDDQILDYQEE-DGMIIEPKFYLPIIPMLLVNGAEGMGTGWSTSIPSF 842 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 N ++ + L+D + + + V+ P + +R KI N G + Sbjct: 843 NPIDLIDSLNILLD----SNAENIGNVKLPSL-----DMWARGFKGKIEMNDSGKFISKG 893 Query: 244 VWKKE--DGAVV--ISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 ++K + ++ IS LP + + ++ ++ E + EN I Sbjct: 894 IFKMKSRGDSIEFDISELPIGEWTENYKSHLQSLVKKG---LIKSKITERNTENSVGFTI 950 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRI-NLNMIGLD-GRPAVKNLLEILSEWLVFRRDT 357 D D+ LEKS+ + N+ + + N+ +I+ ++ + R Sbjct: 951 AIN----DPDEFSESQLKKLKLEKSFSLSNMTVFSENFDIIQFSNVNDIIKQFYLVRLSY 1006 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNI----DEVIEIIRNEDEPKPALMSRF------ 407 +R ++ ++++ K++ IL + I + I+ + E P+ ++ Sbjct: 1007 YHQRKSHLMKQLEKQIRILSNKVKFLNFITSNESNLNTFIKTKKENIPSFLTNVVGIVVD 1066 Query: 408 GLTETQA-EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ 466 T Q+ + ++ + L + +I +LE + +LQ + + + K+ K++L+ Sbjct: 1067 PTTIEQSFNYLTDMNILSLTHEHKDRIN---KQLESAQQELQQVSSDDPKLM--WKRDLK 1121 Query: 467 ADAQA 471 Sbjct: 1122 RLRDE 1126 >UniRef50_A8PTE9 DNA topoisomerase 2 n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PTE9_MALGO Length = 1376 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 94/510 (18%), Positives = 191/510 (37%), Gaps = 73/510 (14%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + + +F + +SM + R++P + DGLKP QR+++++ + L K + Sbjct: 647 RIRNIPISDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVIFSCFKRKLKTEIKVHQL 705 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRY 120 V + YH HGD A +V +AQ F S L+ G +G+ K A+ RY Sbjct: 706 QGYVSE-HSAYH-HGDQALTMTIVGLAQDFCGSNNVNLLMPNGQFGSRSMGGKDAASARY 763 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 + + + + L+ + +++ + DG EP+ +P +LLNG GI G +T + Sbjct: 764 IFTAVPRITRLMFHADDEPLLNYLED-DGQSIEPEWYAPVVPQVLLNGAEGIGTGWSTFV 822 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 P +N REV + + P I G R Sbjct: 823 PNYNPREVVDNLRRRMAGEEYV-------------PMNPWYRGFVGGIEPA---GPERFR 866 Query: 241 MRAVWK-KEDGAVVISALPHQVSGARVLEQIAAQM--RNKKLPMVDDLRDESDHENPTRL 297 + + + ++ I+ LP +V E + ++ +K ++ + ++ + + Sbjct: 867 VTGIARQLDERTWEITELPVRVWTMTYKEWLEERVVGSDKTPAVLREYKEYHTDTSVHFV 926 Query: 298 VIVPRSNRVDMDQVMNHLFAT--TDLEKSYRINLNMIGLDGRPAVKNL---LEILSEWLV 352 V + ++++V F T L S NM+ + +K EIL ++ Sbjct: 927 VELNPRGMEEIERVGPDTFFKLSTMLSTS-----NMVLFNPEGKIKKYATPQEILEDFYF 981 Query: 353 FRRDTVRRRLNY---RLEKVLKRL---------------------------HILEGLLVA 382 R +RR + +L+ V RL + + A Sbjct: 982 VRLGFYQRRKEHLVDQLKLVYDRLSNQARFVSMIIARELSVSNKKKAAIVEELRQLKFQA 1041 Query: 383 FLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEK 442 F ++ + + E + T + +L + + L + ++ E+ E Sbjct: 1042 FPKVEAKAKSVTEEAVEDQEEPDEPANSNTDYDYLLSMAIYSLTQERVERLLKERDHTE- 1100 Query: 443 ERDQLQGILA-SERKMNNLLKKELQADAQA 471 +L+ +L S + + + ++L A + Sbjct: 1101 --TELKILLGRSPQNLWD---EDLTAFLEE 1125 >UniRef50_P06786 DNA topoisomerase 2 n=27 Tax=Fungi/Metazoa group RepID=TOP2_YEAST Length = 1428 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 98/515 (19%), Positives = 190/515 (36%), Gaps = 83/515 (16%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 + + + +F + +S+ + R++P + DG KP QR+++Y + L + K + A Sbjct: 668 KEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAP 726 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTE 122 V + YH HG+ + + ++ +AQ F S L+ G +G K AA RY Sbjct: 727 YVSECT-AYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIY 784 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 + L+K + + ++ D EP+ LP IL+NG GI G +T IPP Sbjct: 785 TELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPILPMILVNGAEGIGTGWSTYIPP 843 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 N E+ + L++ + P + I EI + G + Sbjct: 844 FNPLEIIKNIRHLMNDEELEQMH-------PWFRGWTGTI---EEIEPLRYRMYGRIE-- 891 Query: 243 AVWKKEDGAVVISALPHQVSGARVLEQIAAQM--RNKKLPMVDDLRDESDHENPTRLVIV 300 + D + I+ LP + + + E + + +K P + D+ E H++ + +I Sbjct: 892 ---QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDM--EEQHDDNIKFIIT 946 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEWLVFRRDT 357 + + + + L + +NM+ D +K ++ EILSE+ R + Sbjct: 947 LSPEEMAKTRKI-GFYERFKLISPISL-MNMVAFDPHGKIKKYNSVNEILSEFYYVRLEY 1004 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED-EPKPALMSRFGL------- 409 ++R ++ E++ + + I E + N+ + G Sbjct: 1005 YQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEG 1064 Query: 410 -------TETQAEAI-------------------------------------LELKLRHL 425 + AE I L +++ L Sbjct: 1065 KPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSL 1124 Query: 426 AKLEEMKIRGEQSELEKERDQLQGILASERKMNNL 460 K K+ ++ E E E + L + A + +L Sbjct: 1125 TKERYQKLLKQKQEKETELENLLKLSAKDIWNTDL 1159 >UniRef50_B6K4K4 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K4K4_SCHJY Length = 1499 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 101/514 (19%), Positives = 204/514 (39%), Gaps = 74/514 (14%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 + + F + +SM + R++P + DGLKP QR+++Y M + L AK ++ A + Sbjct: 721 IEIKNFINQELILFSMADNI-RSIPSVVDGLKPGQRKVIYGMFKKNLKNEAKVEQLAGYI 779 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTESR 124 + YH HG+++ + ++ +A F S L+ +G +G+ + K A RY + Sbjct: 780 SEQT-AYH-HGETSLQQTIIGLAHNFVGSNNINLLLPKGQFGSRIEGGKDAAQPRYIFTM 837 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 S+ + LL + +++ N +G EP +P +L+NG GI G +T IP N Sbjct: 838 PSRMARLLFDKRDDPILNYL-NDEGLWVEPDYYVPIVPMLLVNGAEGIGTGWSTFIPNFN 896 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 ++ + LI P P + I+++ + ++ + Sbjct: 897 PSDLVKNIRHLIKNE-------------PLEPMHPWYRGFKGTIQQMTPD---RYKVSGI 940 Query: 245 WK-KEDGAVVISALPHQVSGARVLEQIAAQMR-NKKLPMVDDLRDESDHENPTRLVIVPR 302 + D V I+ LP ++ + E + + M +K+ + D + EN V + + Sbjct: 941 IEQVSDDTVDITELPVRLWTQDMKEYLESLMAADKQGSFIKDYTEYHTEENVHFRVKLTK 1000 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEWLVFRRDTVR 359 + L + ++ + NM+ D + ++ + +IL E+ R + Sbjct: 1001 EGMATA--LAEGLENKFKVARTLATS-NMVAFDPQGRIRKYDSAYDILKEFYEVRLRYYQ 1057 Query: 360 RRLNYRLEKVL----------KRLH--ILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRF 407 RR + + + + +H I L+VA +++ +R + + Sbjct: 1058 RRKEHLVNDLETVYTKISNQARFIHMIIEGTLVVAKKKRSVLVQELREKGFKAIPKPKKG 1117 Query: 408 GLTETQAE-------------------------AILELKLRHLAKLEEMKIRGEQSELEK 442 L E A+ +L + + L M + ++ E E+ Sbjct: 1118 RLAEIAAQETAANRDADDDAEEEDASPEADDFTYLLNMPVYSLTYERYMNLLKKKGECEE 1177 Query: 443 ERDQLQGILASERKMNNL------LKKELQADAQ 470 E D+L I + + +L +KEL DA+ Sbjct: 1178 ELDKLMKITPKDIWLTDLEGFEKEWEKELDEDAK 1211 >UniRef50_P08096 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces pombe RepID=TOP2_SCHPO Length = 1485 Score = 319 bits (817), Expect = 3e-85, Method: Composition-based stats. Identities = 106/507 (20%), Positives = 202/507 (39%), Gaps = 92/507 (18%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 ++ + +F + +SM + R++P + DGLKP QR++VY + L K + A Sbjct: 722 QIPIDDFINRELIQFSMADNI-RSIPSVVDGLKPGQRKVVYYCFKRNLVHETKVSRLAGY 780 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTES 123 V YH HG+ + + +V +AQ F S L+ G +G + K+ +A RY + Sbjct: 781 VASET-AYH-HGEVSMEQTIVNLAQNFVGSNNINLLMPNGQFGTRSEGGKNASASRYLNT 838 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 LS + +L + ++ N +G EP+ LP +L+NG GI G +T IP + Sbjct: 839 ALSPLARVLFNSNDDQLLNYQ-NDEGQWIEPEYYVPILPMVLVNGAEGIGTGWSTFIPNY 897 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSV---- 239 N +++ +++ + + Y RGS+ Sbjct: 898 NPKDITANLRHMLNGEPLEI------------------------MTPWYRGFRGSITKVA 933 Query: 240 ----RMRAVW-KKEDGAVVISALPHQVSGARVLEQI-AAQMRNKKLPMVDDLRDESDHEN 293 ++ + + + V I+ LP + + E + A + +K+ + D H Sbjct: 934 PDRYKISGIINQIGENKVEITELPIRFWTQDMKEYLEAGLVGTEKIR--KFIVDYESHHG 991 Query: 294 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRIN-----LNMIGLDGRPAVK---NLLE 345 + M + +N LE ++++ NMI D +K ++ + Sbjct: 992 EGNVHFNVTLTEAGMKEALN-----ESLEVKFKLSRTQATSNMIAFDASGRIKKYDSVED 1046 Query: 346 ILSEWLVFRRDTVRRRLNYRLEKVLKR----------LH-ILEGLLVAF--LNIDEVIEI 392 IL+E+ R T +RR + + ++ KR +H I+EG LV D ++E+ Sbjct: 1047 ILTEFYEVRLRTYQRRKEHMVNELEKRFDRFSNQARFIHMIIEGELVVSKKKKKDLIVEL 1106 Query: 393 IRNEDEP--KPALMSRFGL-------TETQA------------EAILELKLRHLAKLEEM 431 + +P KP L E Q+ +L + L L + Sbjct: 1107 KEKKFQPISKPKKGHLVDLEVENALAEEEQSGDVSQDEDSDAYNYLLSMPLWSLTYERYV 1166 Query: 432 KIRGEQSELEKERDQLQGILASERKMN 458 ++ ++ E+ E D L I + +++ Sbjct: 1167 ELLKKKDEVMAELDAL--IKKTPKELW 1191 >UniRef50_Q7YZS4 DNA topoisomerase 2 n=1 Tax=Physarum polycephalum RepID=Q7YZS4_PHYPO Length = 1498 Score = 319 bits (817), Expect = 3e-85, Method: Composition-based stats. Identities = 101/488 (20%), Positives = 189/488 (38%), Gaps = 59/488 (12%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 + L +F + + + RA+P + DGLKP QR+++YA + GL K + A Sbjct: 1006 VKNLTYSDFVDKELVQFCRAAN-ARAIPSVVDGLKPGQRKVLYASFKRGLTQEMKVAQLA 1064 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYT 121 V + YH HG+ + + +V MAQ F + PL+ G +G K A+ RY Sbjct: 1065 GYVAE-HTAYH-HGEESLHGTIVNMAQDFVGANNLPLLLPSGQFGTRLQGGKDAASARYI 1122 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 ++L+ + + +L +++ DG +P+ +P +L+NG+ G+ +G T IP Sbjct: 1123 FTKLAPLTRTIFPDLDDPVLNYLEG-DGDRIQPEFFAPIIPMVLVNGSEGLGMGWRTSIP 1181 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 +N + + L+ P P + Y+ +GSV + Sbjct: 1182 MYNPTNLIDNLLRLLHNE-------------PMEP-----------LTPWYKGFKGSVEL 1217 Query: 242 RAVWKKEDGAVV----------ISALPHQVSGARVLEQIAAQMRNKK-LPMVDDLRDESD 290 + + V+ IS LP + E + ++ +K P + D + + Sbjct: 1218 TPPFTFKTYGVIEPTKKEHIFKISELPVRKWTNDYKELLTTYVKPEKGKPTLKDFSEYNT 1277 Query: 291 HENPTRLVIVPRSNRVDM-DQVMNHLFATTDLEKSYRINLNMIGLDGRPAV---KNLLEI 346 + V PR Q L LE ++ + M+ D A+ + L+I Sbjct: 1278 DQKVDFEVTFPRGAEAKPIPQNAQDLLKLLRLESTFF--MKMVLFDRHGAIKEYMDPLDI 1335 Query: 347 LSEWLVFRRDTVRRRLNYR---LEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPAL 403 + ++ R + +R R LE KRL + L L I +++ Sbjct: 1336 IRDFFEVRMEYYAKRKAAREKVLENEAKRL--GDKLKFVKLVISGSLKLFGRSKAELRQD 1393 Query: 404 MSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKK 463 + + GL E +L + L L K + ++ + + E + + + + Sbjct: 1394 LVKSGLGNG-YENLLSIALDDLTKEKTEQLAHAKQRKDAELAETR-----RTSAAAMWEH 1447 Query: 464 ELQADAQA 471 EL+A Sbjct: 1448 ELRALRDK 1455 >UniRef50_A7TEE2 DNA topoisomerase 2 n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TEE2_VANPO Length = 1404 Score = 315 bits (808), Expect = 4e-84, Method: Composition-based stats. Identities = 98/521 (18%), Positives = 207/521 (39%), Gaps = 84/521 (16%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 + + + +F + +S+ + R++P + DG KP QR++++ ++ L K A Sbjct: 667 DAIPISDFINKELILFSLADNV-RSIPSVLDGFKPGQRKVLFCCFKINLTYEIKVGTLAA 725 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTE 122 V + YH HG+ + + +V +AQ F + L+ G++G+ K AA RY Sbjct: 726 KVSEKTS-YH-HGEESLQQTIVGLAQNFVGTNNIYLLKPAGSFGSRATGGKDAAAARYIH 783 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 ++L+K + + +++ + DG+ EP+ +P +L+NG GI G +T+IP Sbjct: 784 TQLNKVARSIFHPSDDALFNYLED-DGSPIEPEWYLPIIPMVLVNGAEGIGTGWSTNIPS 842 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 N ++ + L++ +D++ +G + + ++Y G V Sbjct: 843 FNPLDIIKNIRHLMNDE--VMDEMYPWYRGW----KGVVEKVDDHRFRLY----GKVE-- 890 Query: 243 AVWKKEDGAVVISALPHQVSGARVLEQIAAQM--RNKKLPMVDDLRDESDHENPTRLVIV 300 + + I+ +P + + + E + + K P + D+ E H N R +I Sbjct: 891 ---QVGPNVLEITEVPARTWTSSIKEYLLLGLSGNEKTKPWIKDM--EEQHTNDIRFIIT 945 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEWLVFRRDT 357 + + + ++ L + NM+ D ++ +L+IL+E+ R + Sbjct: 946 LTPEEMAKTKKI-GVYDRFKLVSQVNLK-NMVAFDAHGKIRKYDTVLDILTEFYYVRLEF 1003 Query: 358 VRRRLNYRLEKVL---KRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGL----- 409 ++R +Y +K+ +++ L + ID+ + + + FG Sbjct: 1004 YQKRKDYMSQKLQWTVEKISFQVKFLK--MIIDKEYTVSNKAKKIIMKELEGFGFPRINK 1061 Query: 410 -------------------------TETQ-------------AEAILELKLRHLAKLEEM 431 E Q + +L +KL L Sbjct: 1062 DGKPHYGSVKIEEIEEGNEIEEGNANEEQDDTVHKPSDIVGSYDYLLGMKLWDLTMERYE 1121 Query: 432 KIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 K+R ++ E E E + L + S + + N +L+A + Y Sbjct: 1122 KLRAQKQEKEIELETLLKL--SPKDLWN---TDLEAFEKEY 1157 >UniRef50_A4HGT2 DNA topoisomerase 2 n=11 Tax=Trypanosomatidae RepID=A4HGT2_LEIBR Length = 1501 Score = 314 bits (805), Expect = 8e-84, Method: Composition-based stats. Identities = 94/420 (22%), Positives = 167/420 (39%), Gaps = 38/420 (9%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 M +++ +F + + +S+ +R++P DG KP QR+I+++ + L S K Sbjct: 652 MDYSVRQVSYRDFVDKELILFSIA-DCERSIPSAIDGFKPGQRKILFSCFKRNLVNSIKV 710 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAA 117 + A V + YH HG+ + + +V MAQ F S PL+ G +G K AA Sbjct: 711 VQLAGYVSE-HSAYH-HGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHGGKDHAA 768 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY +RL + + ++ + DG EP +P +L+NGTTGI G + Sbjct: 769 GRYIFTRLMHVARAIFHPADDFVVEYKDD-DGLSVEPFYYIPVIPMVLVNGTTGIGTGFS 827 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T IP +N EV + L+ + Q P Y + + G Sbjct: 828 TSIPNYNPLEVIRNLERLMRGEEVHKMQ-------PWYFGFTGTMEEKE---------PG 871 Query: 238 SVRMRAVWKKE-DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 ++ DG V I+ LP V ++ MR K+L +V +D Sbjct: 872 KFISHGRYEVRPDGVVCITELPIGVWTQTY-KKFLEDMREKEL-VVQYREHTTDVTVDFE 929 Query: 297 LVIVPR--SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLE---ILSEWL 351 + + P+ V D V L + + N+I + + + +L ++ Sbjct: 930 VFLHPQVLEQWVAQDVVEERLQLKEYVHAT-----NIIAFNKEGQITKYWDAESVLKDFY 984 Query: 352 VFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK--PALMSRFGL 409 + R D +R +Y L ++ + LE ++ + E ++ + + L R L Sbjct: 985 LVRLDYYAKRKDYLLGELRRLTSKLENMVRFVREVVEGTLVVTKRKKKELLEDLQGRLYL 1044 >UniRef50_C4PNH1 DNA gyrase subunit A n=8 Tax=Chlamydia trachomatis RepID=C4PNH1_CHLTZ Length = 490 Score = 312 bits (799), Expect = 5e-83, Method: Composition-based stats. Identities = 124/494 (25%), Positives = 223/494 (45%), Gaps = 47/494 (9%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 L + + + Y+ YVI++RA+P + DGLKPVQRR+++ + + K K A G Sbjct: 3 NLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 + HPHGD+ EA+V++A + L++ QGN+G P AA RY E+RLS Sbjct: 60 RTM-ALHPHGDAPIVEALVVLA----NKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 ++ +L + ++DG QEP +L A++P +LL+G GIAVGM T I PHN ++ Sbjct: 115 AKEVL--FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK-K 247 +A IA+++ +L PD+P + S Y++G GS+ +RA Sbjct: 173 LEAQIAILNDQPFSLL--------PDFPPGGTMDASD------YQDGLGSIVLRATIDII 218 Query: 248 EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVD 307 D ++I + + ++ I + + +D ++D S + P + +P+ + Sbjct: 219 NDKTLLIKEICPSTTTETLIRSIENAAKRGIIK-IDSIQDFST-DLPHIEIKLPKG--IY 274 Query: 308 MDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILS-------EWLVFRRDTVRR 360 ++ L+ T+ + I G+P + EIL +L + Sbjct: 275 AKDLLRPLYTHTECQVILTSRPTAI-YQGKPWETTISEILRLQTKTLQNYLKKELLILED 333 Query: 361 RLNYRL-EKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMS-------RFGLTET 412 L+ L K L+ L I L ++ + + A++ + Sbjct: 334 SLSRELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSAIHNAVLEALTPFLDTLPAPDK 393 Query: 413 QAEA-ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQA 471 QA A + L ++ + +E E + LEK+R +Q L+ +K L K+L + Sbjct: 394 QATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQLKKYTVLYIKKLLETYRQ 453 Query: 472 YGDDRRSPLQEREE 485 G R++ + + ++ Sbjct: 454 LGH-RKTKIAKFDD 466 >UniRef50_C3YYJ6 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3YYJ6_BRAFL Length = 1181 Score = 311 bits (798), Expect = 5e-83, Method: Composition-based stats. Identities = 72/360 (20%), Positives = 142/360 (39%), Gaps = 31/360 (8%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 + L +EF + +S +R++P + DGLKP QR++++ + K + A Sbjct: 151 KYLTFNEFVHKELVLFSNSDN-ERSIPSLVDGLKPGQRKVLFTCLKRNDKREVKVAQLAG 209 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTE 122 +V + + YH HG+++ ++ +AQ F S L+ G +G K A+ RY Sbjct: 210 SVAE-MSAYH-HGETSLMGTIINLAQNFVGSNNVNLLQPIGQFGTRIHGGKDAASPRYIF 267 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 + LS + L + + ++ + D EP+ +P +L+NG GI G +T +P Sbjct: 268 TMLSTLARKLFNTFDEPMLNYQYD-DNQKIEPEWYIPLIPMVLVNGAEGIGTGWSTKVPN 326 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 +++RE+ + +ID P + +I ++ EN Sbjct: 327 YDVREIINNMLRMIDGKDP-------------LPMNPSYKNFKGDIEELEEN---RFVAN 370 Query: 243 AVWKK-EDGAVVISALPHQVSGARVLEQIAAQM---RNKKLPMVDDLRDESDHENPTRLV 298 ++ + I+ LP + E + M K M+ D ++ +V Sbjct: 371 GEVAILDNNTIEITELPIRTWTQNYKESVLEVMLHGTEKTPSMITDYKEYHTDTTVRFVV 430 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSY-RINLNMIGLDGRPAVKN-LLEILSEWLVFRRD 356 + + + L L+ + N+ + +G N + +IL E+ R Sbjct: 431 SMTEEQLMKAEA--AGLHKVFKLQSNIASTNMVLFDHNGCLRTYNSVHQILQEFFDLRLQ 488 Score = 44.5 bits (104), Expect = 0.014, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 70/211 (33%), Gaps = 48/211 (22%) Query: 309 DQVMNHLFATTDLEKSYRINLNMI---GLDGRPAVK---NLLEILSEWLVFRRDTVRRRL 362 + V L DL + +N + D ++ ++ +IL E+ R + +R Sbjct: 516 NSVHQILQEFFDLRLQWFLNCLFVVPVLFDHNGCLRTYNSVHQILQEFFDLRLEWYTKRK 575 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALM---SRFGLTETQA----- 414 ++ + + L L E +I N+ + + M + +A Sbjct: 576 DWLMGMLEAEASKLNNQARFILEKIEGKLVIENKPKRELIQMLQARGYDSDPVKAWKETQ 635 Query: 415 --------------------------------EAILELKLRHLAKLEEMKIRGEQSELEK 442 +L + L +L++ ++ ++ +Q E + Sbjct: 636 NDKDKPDDLLDVEEEEAESVASSTASRGGPDYNYLLGMPLWNLSREKKEELLKQQREKGQ 695 Query: 443 ERDQLQGILASERKMNNL--LKKELQADAQA 471 E + L+ S+ ++L +EL+ Q Sbjct: 696 ELEDLRHKTPSDLWKDDLNDFVEELERVEQQ 726 >UniRef50_B0EP10 DNA topoisomerase 2 n=3 Tax=Entamoeba RepID=B0EP10_ENTDI Length = 1351 Score = 311 bits (796), Expect = 9e-83, Method: Composition-based stats. Identities = 92/508 (18%), Positives = 193/508 (37%), Gaps = 72/508 (14%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 + ++ +F + +S Y +R++P + DGLKP QR++++ E + K + + Sbjct: 651 VDSISYEDFVHKELILFS-YDDCERSIPSVVDGLKPSQRKVLWTCLEKNIMKELKVSQLS 709 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPDDP-KSFAAMRYT 121 V + YH HG+ + +V MAQ F S + G +G+ K AA RY Sbjct: 710 GLVSEK-SSYH-HGEVSLQATIVNMAQNFCGSNNVNWLLPSGQFGSRLGGGKDQAAARYI 767 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 +RLS S L + +++ + D EPK +P +L+NG GI G +T + Sbjct: 768 YTRLSSISRYLCPKDDDQILEYLVDED-RRIEPKYYCPIIPTVLVNGADGIGTGWSTAVS 826 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 +N ++ ++ + + P + ++RK ++G G Sbjct: 827 NYNPLDLVDNCRRYLNGEEFKEMK-------PWF------RGWTGQLRK-NKDGSG-YDC 871 Query: 242 RAVWKK-EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 W++ D + I+ LP Q+ + + + K + + + LV Sbjct: 872 YGKWRRLADDKIEITELPIQIWTDTYKQHLEKCIEAKIVKGYSEYHMVNTVHFVIDLV-- 929 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAV---KNLLEILSEWLVFRRDT 357 + + + +L + ++ + NM + + +L+IL+E+ R Sbjct: 930 ---QPMSDEDIWTNLKLVSSVKTT-----NMHLFNSEYKITKYHTVLDILAEFCDVRMKG 981 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKP-ALMSRFGLTETQ--- 413 R +E + ++L IL + + E II N + + + + G + + Sbjct: 982 YEERKKAIIESMERQLMILSNKVRFIKMVIEGDLIINNRKKNELYKDLIKLGFDQIRDPK 1041 Query: 414 ---------------------------AEAILELKLRHLAKLEEMKIRGEQSELEKERDQ 446 + +L +K+ L + K+ + +L+ + D Sbjct: 1042 KANKSKPIGESEDAEIKEEDDDDEVGGYDYLLGMKIWTLTYEKAKKLMEDCDDLKTQIDT 1101 Query: 447 LQGILASERKMNNLLKKELQADAQAYGD 474 ++ + ++ K+L A + Y Sbjct: 1102 VKT-----TPVKDMWLKDLDAFVKKYPQ 1124 >UniRef50_Q04PE8 DNA topoisomerase (ATP-hydrolyzing), subunit A n=6 Tax=Leptospira RepID=Q04PE8_LEPBJ Length = 462 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 114/476 (23%), Positives = 203/476 (42%), Gaps = 31/476 (6%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + D + + + YS YV RA+P DGLKPVQRRI++AM +A ++ Sbjct: 9 LKDSFPKRPFEDQVNDDQRKYSRYVCDSRAIPHEIDGLKPVQRRILWAMW--NSDARNRY 66 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFS--YRYPLVDGQGNWGAPDDPKSFAAM 118 K+ + G +G YHPHGD + +A+ MAQ F+ PLV G+G +G DP + A+ Sbjct: 67 TKTVKVAGLAMG-YHPHGDKSIQDALSQMAQDFTFANNIPLVSGEGTFGDVLDPSAIASP 125 Query: 119 RYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMAT 178 RYTE +LS + + L D+V N+D T EP ++P +LLN GIA G Sbjct: 126 RYTEVKLSDFVKDLGFFESLPDIDYVKNYDETEDEPIHFVGKVPIVLLNNIQGIATGFRC 185 Query: 179 DIPPHNLREVAQAAIALIDQPK-TTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 IP H L ++ ++ I + K +L D+ E ++ + E G Sbjct: 186 FIPGHRLADIVKSQINYLKTKKPLSLKPWYK-----DFNGEVKMAET--------ETGNI 232 Query: 238 SVRMRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 ++ +K E + ++ P + +V+ + + +K + + D S R+ Sbjct: 233 TMSTTFAFKWEGDILYLTDSPMNWNREKVI-SLLDDILERKDSWLKEYVDYSSQT--FRI 289 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 + + + + LF D++ + +N+I DG+ EI+ + FR+ Sbjct: 290 ELQYKKGEKPSQKEIMALFNKEDIQT---LAMNVITYDGKLKNFKPEEIIKRFCDFRKTH 346 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLN--IDEVIEIIRNEDEPKPALMSRFGLTETQAE 415 + RR +++ L+ ++VI I +D S+F E + Sbjct: 347 LIRRFKRLSGLEEEKIERNSELIRFIKEKWNEKVIGIKSKKDFEDKLKASKFKYFEWLST 406 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQA 471 + + + E K E + + QG++ ++K+ + + EL Sbjct: 407 ----IPVYRMTIEEVKKCEEAIIEAKTTLARYQGLVKEDKKLTDYMITELNELQNK 458 >UniRef50_P34534 Putative DNA topoisomerase 2, mitochondrial n=5 Tax=Caenorhabditis RepID=TOP2M_CAEEL Length = 1054 Score = 309 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 109/497 (21%), Positives = 208/497 (41%), Gaps = 42/497 (8%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSE-LGLNASAKFK 61 D ++ EF + + + M V + R++P + DGLKP QR+I++ + + + K Sbjct: 579 DGKTEISYQEFVDGQLMQFGM-VDLKRSIPSLIDGLKPSQRKILWTLLNNMDESTEIKVS 637 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPD-DPKSFAAM 118 + A V YH HG+ + ++ M Q F S PL+ G +G A+ Sbjct: 638 QLAGAVAHRQS-YH-HGEESLVRTIIRMGQTFCGSSNLPLLQPIGQFGTRHEGGNDAASA 695 Query: 119 RYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMAT 178 RY + L+ + LL + +G + EP L +P IL+NGT GI G +T Sbjct: 696 RYIFTALAPTTRLLFPQADDDLLQ-KNVEEGMVVEPTWLCPIVPLILINGTEGIGTGWST 754 Query: 179 DIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQ-GPDYPTEAEIITSRAEIRKIYENGRG 237 I N ++ ID ++ +I ++ + E++T I G Sbjct: 755 KIANRNPIDIIDMIRRKID----SISTEYEIPPFYEEFRGKLEVVTPTKFI------SSG 804 Query: 238 SVRMRAVWKKEDGA--VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 +++ +K + I LP + ++ E+++ + + LP+++ ++ Sbjct: 805 KIQLIRPERKNASTFSIEIVELPIGIWTSKYKEKLSKIV--ETLPVLEFSERHTEKRVHF 862 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK-NLLEILSEWLVFR 354 R+ + + + + + + L L S N + +G N+ EI +E+ R Sbjct: 863 RITLDRKKSSRFLQKSNSDLLNYFKLRTSLTENRVLFDRNGELKEFGNISEIAAEFFEVR 922 Query: 355 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEII----RNEDEPKPALMS-RFGL 409 RD +RL + E+ +L +E L + I RN+ E K M R Sbjct: 923 RDLYEKRLKIQKEECEAKLIYVENQLNFIEMVTNGTIEIRSMGRNQLEEKLQEMGFRVDP 982 Query: 410 TETQAE--------AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLL 461 T A+ +LE+ + L E ++ +S + R +L+ +++ K ++ Sbjct: 983 MATIAKNSKKANYGYLLEMPVSRLTSDEMKRLEERKS---RRRTELEAAESADWK--SVW 1037 Query: 462 KKELQADAQAYGDDRRS 478 + EL A+A G++R+S Sbjct: 1038 RSELDKLAEAVGNNRKS 1054 >UniRef50_Q5CQG8 DNA topoisomerase 2 n=4 Tax=Apicomplexa RepID=Q5CQG8_CRYPV Length = 1797 Score = 309 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 97/464 (20%), Positives = 182/464 (39%), Gaps = 73/464 (15%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 +++ L +F + +S Y R++P + DGLKP QR++++A + LN K Sbjct: 803 INNQCRNLRYFDFIHKELVLFSRY-DTTRSIPNLLDGLKPGQRKVLFATFKKKLNNELKV 861 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAA 117 + A V + YH HG+S+ +V MAQ F S L++ G +G+ + K +A Sbjct: 862 AQLAGYVAE-HSAYH-HGESSLQSTIVNMAQNFVGSNNLNLLEPCGQFGSRKEGGKDASA 919 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY ++LSK++ + E ++ + DG EP +P IL+NGT GI G + Sbjct: 920 ARYIFTKLSKWTRYIFPEADDPLLTYLYD-DGQQIEPLYYVPIIPMILVNGTDGIGTGWS 978 Query: 178 TDIPPHNLREVAQAAIALIDQP-KTTLDQLLDIVQGPDYP-------------------- 216 + +P +N +++ ++ + +G +P Sbjct: 979 SSVPNYNPKDIIMNLKRMLKGEMMVPMTPWYKSFKGKIFPIKQKSKKNSASNGGGNNNRK 1038 Query: 217 ----------------TEAEIITSRAEIRKIYEN---GRGSV-----------RMRAVWK 246 +++ ++++I G G + +K Sbjct: 1039 KTAINSFNNGSNSSILIGSQVDAEDDDLQQIQRTNNMGNGIIEETLELGANYETFGNWYK 1098 Query: 247 KEDGAVVISALPHQVSGARVLEQIAAQM--------RNKKLPMVDDLRDESDHENPTRLV 298 K + +VI+ LP + E + + + N + + D RD S HE+ V Sbjct: 1099 KNEETLVITELPVRRWTQDYKEWLESTLLPAPNADNDNIENSWIIDYRDNSSHESVHITV 1158 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEWLVFRR 355 + + M + L+ + + NM D + L+IL E++ R Sbjct: 1159 RMRPEKLQQAE--MEGIEKIFRLKSTLSTS-NMTLFDHNSRIVRYETELDILKEFIPIRL 1215 Query: 356 DTVRRRLNYRLEKVL-KRLHILEGLLVAFLNIDEVIEIIRNEDE 398 + +R NY L K+ ++ + + +L L I VI + E Sbjct: 1216 EMYEKRKNYLLSKLNYEKCLLEQKILFLKLVIQGVIGLSNKSKE 1259 >UniRef50_B8C981 DNA topoisomerase 2 (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C981_THAPS Length = 1179 Score = 307 bits (788), Expect = 7e-82, Method: Composition-based stats. Identities = 97/506 (19%), Positives = 188/506 (37%), Gaps = 73/506 (14%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 + +F +N +++S + R+LP + DGLKP QR+++YA + L K + A Sbjct: 695 SITYGDFVDNELIHFSNANNI-RSLPNVVDGLKPSQRKVLYACFKRNLKDEIKVAQLAGY 753 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTES 123 + YH HG+++ + ++ MAQ F S L+ G +G A+ RY + Sbjct: 754 CAE-HTAYH-HGEASLHSTIIGMAQDFCGSNNINLLTPSGQFGTRLMGGNDAASPRYIFT 811 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 LS S LL ++ DG + EP+ +P +L+NG GI G +T IP H Sbjct: 812 HLSPLSRLLFPVDDDMLLNYKEE-DGQMIEPEYFCPIIPLLLVNGCQGIGTGWSTFIPQH 870 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 N +V A +D +T + V+G + + S+ RG Sbjct: 871 NPLDVLNYIRAKLD--ETKKPAIRPWVKGFE---GGITVDSK----------RGDYVTEG 915 Query: 244 VWKKEDGA-VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 + + + VVIS LP V + A ++ +++ S + T + + Sbjct: 916 IITPQKNSSVVISELPVGVWTNDYKATLVAMLKK------AEIKSFSQNHTTTTVSFNVK 969 Query: 303 SNRVDMDQVMN-HLFATTDLEKSYRI-NLNMIGLDGRP-AVKNLLEILSEWLVFRRDTVR 359 N +++++ + T L K+ N++ D + + EI + R D Sbjct: 970 VNAAKLNRLLKGDMLKTFKLRKALSTRNMHAFTTDMKIARYNSPEEIADAFFPVRLDLYA 1029 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNID-EVIEIIR--NEDEPKPALMSRFGLT---ETQ 413 R + + ++ + I+++ E AL+ + E Sbjct: 1030 DRKSVLESNMEYSASLMRNKARFIEAVSANKIDLLHGRKSKEATTALLEEMEFSKQSELD 1089 Query: 414 A-----------------------------------EAILELKLRHLAKLEEMKIRGEQS 438 A + +L L L L + + + + Sbjct: 1090 AIKSNNNIAQRRESSNVVMDEFMSDEESAKGAAKEYDYLLNLPLSSLTLEKIDALNDDAA 1149 Query: 439 ELEKERDQLQGILASERKMNNLLKKE 464 + + + +Q++ ++ +L + E Sbjct: 1150 KTDTKLEQIKNTTPADLWREDLNRLE 1175 >UniRef50_C4UA00 DNA topoisomerase 4 subunit A n=9 Tax=Bacteria RepID=C4UA00_YERAL Length = 265 Score = 307 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 197/264 (74%), Positives = 231/264 (87%), Gaps = 1/264 (0%) Query: 489 MSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDS 548 MSEHD++PSEPVTIVLS+MGWVRSAKGHDID GL+YKAGDSF+AA +G SNQPVVF+DS Sbjct: 1 MSEHDIVPSEPVTIVLSEMGWVRSAKGHDIDPSGLSYKAGDSFRAAARGMSNQPVVFIDS 60 Query: 549 TGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTF 608 TGRSYA+DP+TLPSARGQGEPLTGKLT PPGA ++ +LM DDQKLLMASDAGYGFVCTF Sbjct: 61 TGRSYALDPLTLPSARGQGEPLTGKLTPPPGAAIEQVLMAPDDQKLLMASDAGYGFVCTF 120 Query: 609 NDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKG 668 NDLVA+NRAGK +ITLPENA +PP+ I DMLL+IT AGRMLMFPV+DLP+LSKGKG Sbjct: 121 NDLVAKNRAGKTMITLPENAKALPPLEIHGPDDMLLSITAAGRMLMFPVADLPELSKGKG 180 Query: 669 NKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGT-L 727 NKI++IP+A+AA GED LA L+VLPPQ+++T+H GKRK+ LRPE+LQK ERGR+G+ L Sbjct: 181 NKIVSIPAAQAAAGEDRLAWLFVLPPQTSVTLHFGKRKLTLRPEDLQKFRAERGRKGSPL 240 Query: 728 MRGLQRIDRVEIDSPRRASSGDSE 751 RGLQRIDRV+ID+P R DSE Sbjct: 241 PRGLQRIDRVDIDAPPRVIPTDSE 264 >UniRef50_P90520 DNA topoisomerase 2, mitochondrial n=1 Tax=Dictyostelium discoideum RepID=TOP2M_DICDI Length = 1284 Score = 305 bits (782), Expect = 4e-81, Method: Composition-based stats. Identities = 100/482 (20%), Positives = 191/482 (39%), Gaps = 45/482 (9%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 + + +F ++YS + R++P + DGLKP QR+I++A + L K + + Sbjct: 785 IKEITYPDFINKELIHYSWAANL-RSIPSLIDGLKPGQRKILFASFKRRLTNEIKVSQLS 843 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYT 121 V + YH HG+ + +V MA F S PL+ G +G A+ RY Sbjct: 844 GYVAEQTS-YH-HGEQSLNSTIVKMAHNFVGSNNLPLLTPSGQFGTRLQGGSDSASARYI 901 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 ++L + L +EL +++ +G +P +P +L+NG+ GI VGM+T IP Sbjct: 902 FTKLEPVARYLFNELDDPLLNYLEE-EGESIQPDYYIPIIPMLLVNGSEGIGVGMSTSIP 960 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 + ++ + ++ + L +L+ +G + R + R Sbjct: 961 LFSPIDIIDQLMLRLNN-QVALKKLIPWYRG---------------FKGTISPDRHTYRT 1004 Query: 242 RAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 V K + I+ LP + E + + + ES+ EN I+ Sbjct: 1005 NGVIKLVGRNLEITELPIGRWTSDYKEVLNDLIDKDVIKSFQ----ESNTENSVHFTILL 1060 Query: 302 RSNRVDM--DQVMNHLFATTDLEKSYRINLNMIGLDGR-PAVKNLLEILSEWLVFRRDTV 358 +N+++ D N L L S +L + + ++++ EI+ ++ R Sbjct: 1061 NNNQLEQMEDLTENELIKLFKLSASLNFHLTCFDENSKIQKLESVEEIIDQFYKVRLQFY 1120 Query: 359 RRRLNYRLE---KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPAL------MSRFGL 409 +R Y L+ +KRL L + I+ +D K FG Sbjct: 1121 GKRREYLLKSLDNQIKRLTTTIQFLEVIASGKLKIQGRSKQDLIKELESGEIVGFENFGT 1180 Query: 410 TETQA-EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 + + + L + + K + ++L K + + Q I +S+ K +L +LQ Sbjct: 1181 HPPEVYQHLFSLSILDITKERIDNLT---NQLTKRKSEHQSISSSDPK--SLWTADLQQL 1235 Query: 469 AQ 470 + Sbjct: 1236 KE 1237 >UniRef50_UPI000194EBBC PREDICTED: similar to putative DNA gyrase subunit A; 1114-7603, partial n=1 Tax=Taeniopygia guttata RepID=UPI000194EBBC Length = 424 Score = 305 bits (781), Expect = 5e-81, Method: Composition-based stats. Identities = 121/440 (27%), Positives = 206/440 (46%), Gaps = 64/440 (14%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 S+ R L ++ +L+Y+ YVI++RA+P I DGLKPVQRRI+++M L +F Sbjct: 39 SNDTIRHQLRGMYQSWFLDYASYVILERAVPNIEDGLKPVQRRILHSM---KLLDDGRFN 95 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K A VG+ + ++HPHGD++ YEA+V + Q + LV+ QGNWG AA RY Sbjct: 96 KVANIVGNTM-QFHPHGDASIYEALVQLGQ----KELLVETQGNWGNTLTGAGAAAGRYI 150 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+RLS+++ D V N PK+ L GIAVG+++ I Sbjct: 151 EARLSQFA-----------LDVVYN-------PKVTEWTL------SAEGIAVGLSSKIL 186 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR--GSV 239 PHN E+ AAI+ + TL PD+ T I SR Y +G G V Sbjct: 187 PHNFNEIIDAAISYLRGEPFTL--------YPDFFTGGSIDVSR------YNDGERGGVV 232 Query: 240 RMRAVW-KKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 ++RA K ++ + I+ +P+ + A ++E I K+ + + D + + Sbjct: 233 KIRAKIEKIDNKTLAITEIPYGKTTATLIESIVKAQEAGKIK-IRSVVDNTAQTANVIVY 291 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 ++P ++ D+ ++ L+A TD E S N +I D +P + ++L + RD + Sbjct: 292 LLPGTSS---DKTIDALYAFTDCEVSVSPNCCVIS-DNKPHFIGVSDVLRHNVDRTRDIL 347 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNI---DEVIEIIRNEDEPKPALMSRFGLTETQAE 415 + L +L +V ++LH + D+ E N ++ + R E Sbjct: 348 GQELRIQLGEVREQLHFASLERIFIEERIYKDKGYEESENREQAIAHIRGRL-------E 400 Query: 416 AILELKLRHLAKLEEMKIRG 435 ++ +R + + +++ Sbjct: 401 KFKDIFIREVTDDDIIRLFE 420 >UniRef50_B7G2K9 DNA topoisomerase 2 (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G2K9_PHATR Length = 1165 Score = 302 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 86/483 (17%), Positives = 171/483 (35%), Gaps = 62/483 (12%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 ++ +F +++S + R++P DGLKP QR+++YA + L + K + Sbjct: 687 NVSYEDFINKEMIHFSNADNI-RSIPSAIDGLKPSQRKVLYACFKRKLKSEIKVAQLTGY 745 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTES 123 + YH HG+++ ++ MAQ F S L+ G +G A+ RY + Sbjct: 746 CAE-HTAYH-HGEASLQSTIIGMAQDFVGSNNINLLVPSGQFGTRIMGGADAASPRYIYT 803 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 L+ + L E ++ + DG EP+ +P +++NG GI G +T IPPH Sbjct: 804 YLAPIARSLFPEADDTLLSYLED-DGQQIEPEFYCPIIPLLVVNGCQGIGTGWSTFIPPH 862 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 + +V + +A +D + L ++ +G + I NG G V Sbjct: 863 SANDVLEYILAKLDGAE-RLPKIHPFARG-----------FQGRIEPD-PNGNGYVSFGR 909 Query: 244 VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 D ++I LP + + + ++ + +H +V Sbjct: 910 SSCISDRTILIDELPLRCWTNKYKGILLKMRDRGEVTSFVE-----NHNTSKVSFLVTLK 964 Query: 304 NRVDMDQVMNHLFATTDLEKSY-RINLNMIGLDGRP-AVKNLLEILSEWLVFRRDTVRRR 361 + L + L+ + N++ DG+ I+ + R + R Sbjct: 965 SAQLARMTQAGLEKSFKLKTNLQTTNMHAFNKDGQICKFDTAESIVEAFFPVRMQLYQDR 1024 Query: 362 LNYRLEKVLKRLHILE---GLLVAFLNIDEVIEIIRNEDEPKPALMSRFGL---TETQA- 414 + + IL G + A + D + R + + G E A Sbjct: 1025 IALLQSLLNYEASILRNKAGFIKAVTSGDIDLTSGRRSKQETSKKLKEHGFLDSVELNAI 1084 Query: 415 ----------------------------EAILELKLRHLAKLEEMKIRGEQSELEKERDQ 446 + +L + L L + ++ + +KE ++ Sbjct: 1085 KNENVLWKRRQFASEKGEGGSNLEPMNFDYLLNMPLSSLTSEKIRELGEHAATKDKELEE 1144 Query: 447 LQG 449 ++ Sbjct: 1145 MKS 1147 >UniRef50_C5KAQ6 DNA topoisomerase 2 n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KAQ6_9ALVE Length = 1579 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 88/408 (21%), Positives = 167/408 (40%), Gaps = 34/408 (8%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 L +F + +S Y +M R++P + DG KP QR++++ + L + K + Sbjct: 685 SLRYLDFINKELVQFSKYDVM-RSIPSMVDGFKPSQRKVLFCALKRNLKSDTKVAQFVGY 743 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPD-DPKSFAAMRYTES 123 V + YH HG+ + +V MAQ F S L+ G +G K A+ RY + Sbjct: 744 VSE-HSAYH-HGEQSLESCIVGMAQDFTGSNNLNLLFPSGQFGTRQQGGKDAASGRYIYT 801 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 RLSKY+ + +++ +G EPK +P +L+NG GI G +T++ + Sbjct: 802 RLSKYTRTIFHPDDDDVLEYL-TEEGQSIEPKWYCPIIPMVLVNGAEGIGTGWSTNVLSY 860 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 + RE+ ALI L + +G T + + + G VRM + Sbjct: 861 DPREIIHLLRALIRG--VELHDIHPWYRG---FTGSVERNDKNG-----YDFVGKVRMAS 910 Query: 244 VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 +D V I+ LP + + + + + L R ++H + + + Sbjct: 911 ----DDRTVDITELPVKTWTQNY-KDLDTLVVSVILLG----RYHTEHSVHFKCTLQNEA 961 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEWLVFRRDTVRR 360 + +D + L L ++ NM+ D ++ ++L+I+ ++ R D + Sbjct: 962 AKSVVDSL--GLEKAFKLRSAFST-TNMVLFDRDGKIRRYDSVLDIIKDFADLRLDMYVK 1018 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFG 408 R + + K+ K + IL + + + I + + LM Sbjct: 1019 RKDSLIAKLTKEILILSNKCRFVMMV--INGEIVFQKKKIVQLMEELK 1064 >UniRef50_Q5KSK9 DNA topoisomerase 2 n=5 Tax=Basidiomycota RepID=Q5KSK9_COPCI Length = 1572 Score = 301 bits (771), Expect = 8e-80, Method: Composition-based stats. Identities = 95/513 (18%), Positives = 182/513 (35%), Gaps = 80/513 (15%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 E + EF + +SM + R++P I DGLKP QR++++ + L K + Sbjct: 753 RLEEIPYSEFINKELILFSMADNV-RSIPSIADGLKPGQRKVIWGCFKRKLKKEIKVAQL 811 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPD-DPKSFAAMRY 120 + + YH HG+++ ++ +AQ + S L+ G +G + K AA RY Sbjct: 812 VGYISE-HAAYH-HGEASLAATIINLAQDYVGSNNLALLSPNGQYGTREIGGKDHAAPRY 869 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 + + + +++ + D EP+ +P +L+NG GI G +T+I Sbjct: 870 IFTNAKSITRAIYHPFDDPLLNYLKD-DDVPIEPEWYMPTVPMVLINGAEGIGTGWSTNI 928 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PP+N ++ ++ + + P + E+R G+G Sbjct: 929 PPYNPVDIVANLRRMMKEEEPE-------------PMTPWWRGFKGEVRP---TGKGKYD 972 Query: 241 MRAVW-KKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDD--------------- 284 + V K D V IS LP +++ A + +K D Sbjct: 973 VVGVATKINDTTVEISELPIHKWTRTFKDELEAMITGEKKDKDKDKDKDEDGKKDVVKNA 1032 Query: 285 --LRDESDHENPTRLVIVPRSNRVDMDQVMNH-LFATTDLEKSYRINLNMIGLDGRPAVK 341 ++D +H + ++ N D+++ L L NMI D +K Sbjct: 1033 GMVKDFKEHHDNLNVLFEVTMNPKDLEKAEEKGLVEFFGLTTKVST-TNMILFDFEGKIK 1091 Query: 342 NL---LEILSEWLVFRRDTVRRRLNY---RLEKVLKRLHILEGLLVAFLNIDEVIEIIRN 395 EIL ++ R ++R +Y L +L+ + + + V+ + Sbjct: 1092 KYETPEEILKDFYPMRLAYYQKRKDYQALELSTAYDKLNNQIRFIEMIIKKELVVSNRKK 1151 Query: 396 EDEPKPALMSRFGLTETQA-----------------------------EAILELKLRHLA 426 D F A + +L + + L Sbjct: 1152 ADIVAELRKLNFRPFPKVAKTKTAKPDEEEEESEDEEEESGSEAVTDFDYLLGMAIYSLT 1211 Query: 427 KLEEMKIRGEQSELEKERDQLQGILASERKMNN 459 + K++ + E KE++ L + S + N Sbjct: 1212 RERIEKLKQQAHE--KEQELLALLEKSPTDLWN 1242 >UniRef50_D0MV61 DNA topoisomerase 2 n=2 Tax=Eukaryota RepID=D0MV61_PHYIN Length = 1329 Score = 301 bits (771), Expect = 8e-80, Method: Composition-based stats. Identities = 96/514 (18%), Positives = 178/514 (34%), Gaps = 67/514 (13%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 + +F + +S R+LP + DGLK QR++++A + L + K + A Sbjct: 665 SVTYQDFVNRELIQFSHADNQ-RSLPSVVDGLKISQRKVLFACMKRKLTSEVKVAQLAGY 723 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTES 123 + YH HG+++ + +V MAQ F S PL+ G +G K A+ RY + Sbjct: 724 CSE-HTAYH-HGEASLHSTIVNMAQDFVGSKNLPLLFPSGQFGTRLQGGKDAASPRYIFT 781 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 L K++ L+ E + + DG EP +P +L+NG GI G ++ IP H Sbjct: 782 LLQKHTRLVFPEEDDALLRYADD-DGFPVEPVFYVPIIPMLLVNGAEGIGTGWSSSIPCH 840 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 + V + L+D + D + + +IR+ G+ S R Sbjct: 841 HPVLVIDNLLKLLDAEEAGDDLSIVELSL----MTPWAKGFSGDIRQ---TGKHSFVSRG 893 Query: 244 VWKKEDGAVV-ISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 ++ + + V ++ LP + + + K + + E D + Sbjct: 894 NVEQVNTSTVRVTELPVGKWVEDYKKFLWDLVGKKAIRSFSEHHSERDVRFDISMTRSDL 953 Query: 303 SNRVDMDQVMN-------HLFATTDLEKSYRI-NLNMIGLDGR-PAVKNLLEILSEWLVF 353 + + D N L LE N++ DG+ + ++L ++ Sbjct: 954 AKYAE-DAAENCDAGDSEALVKLLRLEAPLSTSNMHAFNADGQLVKYETSEDVLRDFYGV 1012 Query: 354 RRDTVRRRLNY-RLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALM---SRFGL 409 RR +R + + + L + + ++ I E PK L+ G Sbjct: 1013 RRKLYSKRKRHLEQRQTKEVLRLSNRIRFIQEVSTGSLQKILRERIPKAELIDLLKEHGF 1072 Query: 410 TE---------------------------------TQAEAILELKLRHLAKLEEMKIRGE 436 + +L L K ++R E Sbjct: 1073 APASAFKEEAIDHMGDLGLAAVGREQGKAGDLDGSEDYDYLLNTSLMSFTKEFADRLRKE 1132 Query: 437 QSELEKERDQLQGILASERKMNNLLKKELQADAQ 470 + + QLQ + L + EL+ Sbjct: 1133 HDTKQDKLQQLQATTPA-----QLWRNELERLRA 1161 >UniRef50_P30182 DNA topoisomerase 2 n=6 Tax=Eukaryota RepID=TOP2_ARATH Length = 1473 Score = 301 bits (770), Expect = 9e-80, Method: Composition-based stats. Identities = 88/421 (20%), Positives = 164/421 (38%), Gaps = 29/421 (6%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 ++ +F + +SM + R++P + DGLKP QR+I++ + K + Sbjct: 681 KVTYSDFVNKELILFSMA-DLQRSIPSMVDGLKPGQRKILFVAFKKIARKEMKVAQLVGY 739 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPD-DPKSFAAMRYTES 123 V +L YH HG+ + A++ MAQ + S L+ G +G K A+ RY + Sbjct: 740 VS-LLSAYH-HGEQSLASAIIGMAQDYVGSNNINLLLPNGQFGTRTSGGKDSASARYIFT 797 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 +LS + +L + D N DG EP +P +L+NG GI G +T IP + Sbjct: 798 KLSPVTRILFPKDDDLLLD-YLNEDGQRIEPTWYMPIIPTVLVNGAEGIGTGWSTFIPNY 856 Query: 184 NLREVAQAAIALIDQPK-TTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 N RE+ L++ +D +G T ++ I +YE Sbjct: 857 NPREIVANVRRLLNGESMVPMDPWYRGFKGTIEKTASKEGGCTYTITGLYE--------- 907 Query: 243 AVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 + ++ + I+ LP + + + + P D++ +D ++ +I+ Sbjct: 908 ---EVDETTIRITELPIRRWNDDYKNFLQSLKTDNGAPFFQDVKAYNDEKSVDFDLILSE 964 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNL---LEILSEWLVFRRDTVR 359 N + Q L + + NM D + +K +IL E+ R + Sbjct: 965 ENMLAARQ--EGFLKKFKLTTTIATS-NMHLFDKKGVIKKYVTPEQILEEFFDLRFEYYE 1021 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP---KPALMSRFGLTETQAEA 416 +R ++ + L LE L + I+ + + F +AE+ Sbjct: 1022 KRKETVVKNMEIELLKLENKARFILAVLSGEIIVNKRKKADIVEDLRQKGFTPFPRKAES 1081 Query: 417 I 417 + Sbjct: 1082 V 1082 >UniRef50_B3H4G2 DNA topoisomerase 2 n=14 Tax=Magnoliophyta RepID=B3H4G2_ARATH Length = 1438 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 88/421 (20%), Positives = 164/421 (38%), Gaps = 29/421 (6%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 ++ +F + +SM + R++P + DGLKP QR+I++ + K + Sbjct: 681 KVTYSDFVNKELILFSMA-DLQRSIPSMVDGLKPGQRKILFVAFKKIARKEMKVAQLVGY 739 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPD-DPKSFAAMRYTES 123 V +L YH HG+ + A++ MAQ + S L+ G +G K A+ RY + Sbjct: 740 VS-LLSAYH-HGEQSLASAIIGMAQDYVGSNNINLLLPNGQFGTRTSGGKDSASARYIFT 797 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 +LS + +L + D N DG EP +P +L+NG GI G +T IP + Sbjct: 798 KLSPVTRILFPKDDDLLLD-YLNEDGQRIEPTWYMPIIPTVLVNGAEGIGTGWSTFIPNY 856 Query: 184 NLREVAQAAIALIDQPK-TTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 N RE+ L++ +D +G T ++ I +YE Sbjct: 857 NPREIVANVRRLLNGESMVPMDPWYRGFKGTIEKTASKEGGCTYTITGLYE--------- 907 Query: 243 AVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 + ++ + I+ LP + + + + P D++ +D ++ +I+ Sbjct: 908 ---EVDETTIRITELPIRRWNDDYKNFLQSLKTDNGAPFFQDVKAYNDEKSVDFDLILSE 964 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNL---LEILSEWLVFRRDTVR 359 N + Q L + + NM D + +K +IL E+ R + Sbjct: 965 ENMLAARQ--EGFLKKFKLTTTIATS-NMHLFDKKGVIKKYVTPEQILEEFFDLRFEYYE 1021 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP---KPALMSRFGLTETQAEA 416 +R ++ + L LE L + I+ + + F +AE+ Sbjct: 1022 KRKETVVKNMEIELLKLENKARFILAVLSGEIIVNKRKKADIVEDLRQKGFTPFPRKAES 1081 Query: 417 I 417 + Sbjct: 1082 V 1082 >UniRef50_A0C0L0 DNA topoisomerase 2 n=3 Tax=Paramecium tetraurelia RepID=A0C0L0_PARTE Length = 1274 Score = 299 bits (766), Expect = 3e-79, Method: Composition-based stats. Identities = 100/532 (18%), Positives = 190/532 (35%), Gaps = 95/532 (17%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 L EF +++SM + R++P + DGLKP QR++++A + L K + Sbjct: 652 ELGYSEFIHKELIHFSMADNI-RSIPSLMDGLKPGQRKVLFACFKRNLKQEIKVVQLGGY 710 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTES 123 + + YH HGD + ++ MAQ F S L+ +G +G+ K A+ RY + Sbjct: 711 IAE-HSAYH-HGDLSLVSTIIGMAQNFVGSNNINLLLPKGQFGSRAMGGKDHASARYIST 768 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 L+K + + E + + DG + EP+ +P L+NG GI G +T I + Sbjct: 769 ALNKITRYIFPEQDDHLLKYQED-DGQMVEPEYYVPIIPMSLVNGAEGIGTGWSTSIQNY 827 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 N E+ +D P P + I + NG G ++ Sbjct: 828 NPIELVNQIKNRLDGQPFQ----------PMTP----FYRNFDGIIENLPNGNGIIKGII 873 Query: 244 VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 + + I LP + E + +M ++ + DLR+ ++ + Sbjct: 874 DCNEATDIITIRELPIKKWTRNYKEWLDKEM-AEEGSQIVDLREY---HTKYKIHFEIQM 929 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKN---LLEILSEWLVFRRDTVRR 360 + + N L L + NM+ D +K + +I+ E+ R + Sbjct: 930 VDGFVSDLKNPL-EYFKLSTPASCS-NMVLFDSNNKIKKYECVSDIMEEFYQVRLQFYHK 987 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLN-IDEVIEIIRNED-------------------EPK 400 R Y + K+ + + +L+ L I E I+I + + K Sbjct: 988 RKEYLVSKLDREVQLLDNKLKFIKMVISEEIQIRNVKKIDLVKQLDKNGFTRFSQLIQVK 1047 Query: 401 PALMSRFGLTETQAE----------------------------------------AILEL 420 + FG ++ Q + +L + Sbjct: 1048 STKVKAFGDSQKQKKNVDDDESEDEQVSEDEDKQQKKQIQKKLQSTPSIDISEFNYLLSM 1107 Query: 421 KLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 L L + K++ E L + + ++ E + +++L +AY Sbjct: 1108 PLFSLTYEKVEKLQEE---LNQRVQSREALVNKEISLM--WREDLDKFLEAY 1154 >UniRef50_C7U0P4 DNA topoisomerase II n=2 Tax=unclassified Phycodnaviridae RepID=C7U0P4_9PHYC Length = 1072 Score = 297 bits (762), Expect = 8e-79, Method: Composition-based stats. Identities = 84/449 (18%), Positives = 175/449 (38%), Gaps = 42/449 (9%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 + L++ F +N+S+ + R++ + DGLKP QR+++YA L K + A Sbjct: 640 VKNLSITHFVRKDLVNFSLA-DLKRSIAHMADGLKPSQRKVMYACFHKNLKDEMKVAQLA 698 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYT 121 V D YH HG+ + + +V +A + S L++ G +G K + RY Sbjct: 699 AYVADK-SAYH-HGEVSLADTIVKLANDYMGSNNINLLEPCGQFGTRLMGGKDASQTRYI 756 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 ++L+K + + +++ + DG EP LP +L+NGT GI G + +P Sbjct: 757 FTKLTKDARKIFDPRDDPVLNYLDD-DGRAIEPDFYMPTLPMVLVNGTEGIGTGFSCYVP 815 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 P N +++ + ++ + P + R K+++ G+ Sbjct: 816 PFNPKDIKENIQRSLEGHDFKEMK-------PWF---------RGFKGKVFKED-GTWIT 858 Query: 242 RAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 VW+ + ++ LP E + M K + + S E+ ++ Sbjct: 859 EGVWRDTGSRLKVTELPPGRWTQDYKEYLDTLMEKKVISG---FTNNSTTEDVDFEIMGY 915 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGL---DGRPAVKNLLEILSEWLVFRRDTV 358 V + KS+ + NM G + EIL +++ R D Sbjct: 916 TGKDV---------LKDLKMRKSFHTS-NMHLFHPTKGIYKYSSPEEILKDFVDLRLDHY 965 Query: 359 RRRLNYRLEKVLKRLHI--LEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEA 416 ++R + ++ + + + + V + +++ R +D+ + L F + Sbjct: 966 KKRKEHLIKVLQTKATMAGYKSKFVTMVIEGDIVVFKRKKDDLERQLAQIFPQIGGTYDY 1025 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERD 445 +L +K + ++ E + +E + Sbjct: 1026 LLNIKTVQYTEECVRELLREAKQAREELE 1054 >UniRef50_Q252N7 DNA gyrase subunit A n=9 Tax=Chlamydiales RepID=Q252N7_CHLFF Length = 479 Score = 295 bits (756), Expect = 4e-78, Method: Composition-based stats. Identities = 123/500 (24%), Positives = 229/500 (45%), Gaps = 54/500 (10%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 + + + +++Y+ YVI++RA+P I DGLKPVQRR+++ + + K K A G Sbjct: 4 VSDLFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFRMD---DGKMHKVANIAGR 60 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 + HPHGD+ EA+V++A + L+D QGN+G P AA RY E+RLS + Sbjct: 61 TM-ALHPHGDAPIVEALVVLA----NKGYLIDTQGNFGNPLTGDPHAAARYIEARLSPLA 115 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 + +L + ++DG +EP +LPA+LP +LL+G GIAVGM T I PHNL E+ Sbjct: 116 KDIL--FNTDLMSFHDSYDGREKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLYELI 173 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED 249 +A IA+++ TL PD+ + + S Y++G GS+ +RA + D Sbjct: 174 EAQIAILNNRTFTLL--------PDFYSGGVMDASE------YQDGLGSITIRASIQIVD 219 Query: 250 -GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308 ++I + + ++ I + + +D ++D S + + + + Sbjct: 220 SKTLIIKEICPSTTTETLIRSIENAAKRGVIK-IDSIQDFSTDQPH---IEIKLPKGIYA 275 Query: 309 DQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEK 368 ++ LF T+ + I + +P ++ EIL +++ L L Sbjct: 276 KDILEPLFQYTECQVVLTSKPTAI-YNNKPVETSISEILKLHTEALEGYLQKELQI-LHD 333 Query: 369 VLKRLHILEGLLVAF------LNIDEVIEIIRNE---DEPKPALMSRF-----GLTE--- 411 L + H + L F + E++ + N+ ++ A+++ L E Sbjct: 334 ELAQEHYYKSLEYIFIKHRLYDIVRELLSKLGNKVSQEDLHEAVLASLAPFISSLPEAPC 393 Query: 412 TQAEA-ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQ 470 QA + + L ++ + E + ++K++ ++ L++ +K K L+ Sbjct: 394 KQATSQLASLAIKKILCFNETSYTKDLEGIKKKQTAVKKDLSNMKKFT---IKYLKGLLA 450 Query: 471 AYGD--DRRSPLQEREEAKA 488 YG+ R++ + K Sbjct: 451 KYGELGKRKTQILSFSNQKK 470 >UniRef50_UPI0001906031 DNA topoisomerase IV subunit A n=2 Tax=Rhizobium etli RepID=UPI0001906031 Length = 455 Score = 294 bits (754), Expect = 6e-78, Method: Composition-based stats. Identities = 117/382 (30%), Positives = 194/382 (50%), Gaps = 23/382 (6%) Query: 378 GLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQ 437 GLL+A+LNIDEVI IIR EDEPKP +++R+ LT+ Q EAIL ++LR L KLEE +IR E Sbjct: 3 GLLIAYLNIDEVIRIIREEDEPKPVMVARWDLTDNQVEAILNMRLRSLRKLEEFEIRKEF 62 Query: 438 SELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD-----RRSPLQEREEAKAMS-E 491 EL KE+ +++ +LAS+ K + E+ + + RR+ + EA + + Sbjct: 63 DELTKEKGEIEALLASDDKQWQTVAWEIGEVKKKFAKATEVGRRRTQFADAPEADEEAIQ 122 Query: 492 HDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGR 551 M+ EP+T+V+S+ GW+R+ KGH D L +K GD K A ++ ++ V + G+ Sbjct: 123 QAMIEKEPITVVISEKGWIRALKGHIADTATLTFKEGDGLKVAFPAQTTDKILIVTTGGK 182 Query: 552 SYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 611 ++ + LP RG GEPL + + V + +K L+ S AG GFV +L Sbjct: 183 AFTLGGDKLPGGRGHGEPLRIMVDMDNDQAVLTAFVHDPSRKQLIVSTAGNGFVVAEAEL 242 Query: 612 VARNRAGKALIT--LPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGN 669 +A R GK ++ LPE ++ PV + D + + + ++L+FP++ +P++++GKG Sbjct: 243 IANTRKGKQIMNVALPEETQLLVPV----SGDHVAVVGENRKLLVFPLAQVPEMTRGKGV 298 Query: 670 KIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTG---ERGRRGT 726 ++ G++ + L +R E+ + R RR Sbjct: 299 RLQRYKDG-------GISDVRCFAISDGLVWEEQRRA-HFHEEQGRACRMAWRPRQRRAH 350 Query: 727 LMRGLQRIDRVEIDSPRRASSG 748 G ++ P R+ Sbjct: 351 RAEGFSAQRQIRRLKPFRSGRS 372 >UniRef50_A8Q6X4 DNA topoisomerase 2 n=1 Tax=Brugia malayi RepID=A8Q6X4_BRUMA Length = 1178 Score = 291 bits (746), Expect = 6e-77, Method: Composition-based stats. Identities = 105/465 (22%), Positives = 177/465 (38%), Gaps = 45/465 (9%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 EF + YS + + R+LP + DGLKP QR++++ M + + A V Sbjct: 717 TFSEFVNEELVEYSQ-LDLRRSLPNVVDGLKPSQRKVLFTMFGRYERGEIRVSQLAGAVS 775 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTESRL 125 G YH HG+ + +V +AQ F S L+ G +G + A+ RY + L Sbjct: 776 QYCG-YH-HGEESLVNTIVRLAQDFVGSNNLNLLLPLGQFGTRLSGGEDVASARYIYTSL 833 Query: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 S + + + + L EP+ +P IL+NG GI G AT I P Sbjct: 834 SPLARAIFPHPDDKVLKNLVE-ENALVEPEWYCPIIPMILINGAEGIGTGWATKILPRCP 892 Query: 186 REVAQAAIALIDQ-PKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 R+V A LID P + QG Y T + G V R + Sbjct: 893 RQVISNAQRLIDGRPLQDMLPHFRKFQGTIYETAPRQYSIS-----------GKVSYRRL 941 Query: 245 WKKEDGAVVISALPHQVSGARVLEQIAA-QMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 K +I+ LP + + E++ ++N + ++L ES+ ++ P Sbjct: 942 --KSGLRAIITELPTGIWNNKYKEKVLDSAIKNGIISNYEELHTESNVHFILHVIDKPLL 999 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR---PAVKNLLEILSEWLVFRRDTVRR 360 + + +N L L N MI D + + EI E+ RR Sbjct: 1000 SDKKQIKALNRLLK---LRSVASENS-MILFDEKNVLQKYDSTREIFQEFFEVRRQKYIE 1055 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNI--DEVIEIIRNEDEPKPALMSR-FGLTETQAE-- 415 R L + +L +E + I E+I +N E L + F +A+ Sbjct: 1056 RRECELVIMEGKLKFIENQVRFVNAIINGEIIIKKKNRAEIIAQLAEKGFDSNPMKAKNA 1115 Query: 416 -----------AILELKLRHLAKLEEMKIRGEQSELEKERDQLQG 449 +L++ L L+ E + ++ ++S+L + L+ Sbjct: 1116 TDGNCNPPDFAYLLDMPLCRLSNEEILVLQEKRSQLWERFKSLKS 1160 >UniRef50_Q6WHM1 Topoisomerase II small subunit n=1 Tax=Vibrio phage KVP40 RepID=Q6WHM1_BPKV4 Length = 428 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 97/457 (21%), Positives = 191/457 (41%), Gaps = 36/457 (7%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 + L + L Y+MY I +RAL DGLKPVQR ++Y + + +AS F K A Sbjct: 2 QRTLSSIVNDEALEYAMYTIENRALANGIDGLKPVQRFVLYNVIK---DASTSFDKVAAL 58 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 V + HG+++ +A+ LMA + P+V G+GN+G+ K A+ RY ++L Sbjct: 59 GSSVSKIGYNHGETSAQDALALMAAEWQNNVPIVQGRGNFGSRMV-KESASARYVYAKLH 117 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 +L ++ + D P+ LP IL+NG GIA G A +I PH+ Sbjct: 118 DNFDLYFKDIHLS----PEHKDLEHVPPQFYVPVLPMILMNGVQGIATGFACNILPHDPE 173 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 V +A + + + + +V+ P++ +I K+ N + Sbjct: 174 WVKKAVLEYLAGKEISEP----VVKFPEF---------YGKIEKLEHN---KYAQIGTVE 217 Query: 247 KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRV 306 V++ +P A+ + ++ + K + DE+ R V R ++ Sbjct: 218 ISGLTAVVTEIPTGFDHAKYIIELDKLVEKGK---ISSYVDETSETFQFR-VRFKRGAKM 273 Query: 307 DMDQVMNHLFATTDLEKSYRINLNMIGLDGRPA-VKNLLEILSEWLVFRRDTVRRRLNYR 365 + V+ L L+ ++ N+N+I + + ++ E++ ++ FR + +R+ Sbjct: 274 TEESVIKTL----KLQSTFTQNINVIDENYQIRHFDDVRELVKWFVDFRMSFLPKRIQDS 329 Query: 366 LEKVLKRLHILEGLLVAFLNIDE--VIEIIRNEDEPKPALMSRFGLTETQAEAILELKLR 423 E+ KR + + + +I + E L + +E +L + + Sbjct: 330 TERTEKRASLAIAKVEFIKRVVSGTIILFGKKRAEVAAELKADEAFSEH-VTELLNMSVD 388 Query: 424 HLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNL 460 + E ++ + + +KE Q A + + ++ Sbjct: 389 KMTDDEIARLEKDATVAQKELSYWQKTTAQKEFIKDI 425 >UniRef50_Q27537 Chromosome instability 4 n=3 Tax=Chromadorea RepID=Q27537_CAEEL Length = 842 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 96/531 (18%), Positives = 185/531 (34%), Gaps = 104/531 (19%) Query: 16 NAYLNYSMYVIMD-RALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 + NY + + ++P + DGLKP QR++++A + K + A V + + Y Sbjct: 298 KDFFNYEIVCSWNLHSIPCLVDGLKPGQRKVLFACFKRANKREVKVAQLAGAVAE-ISAY 356 Query: 75 HPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTESRLSKYSEL 131 H HG+ + +V +AQ + S+ L+ G +G K A+ R ++LS+ + Sbjct: 357 H-HGEQSLMGTIVNLAQDYVGSHNINLLLPIGQFGTRLQGGKDSASARSIFAQLSQVTRT 415 Query: 132 LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQA 191 L ++ + EP+ +P +L+NG G G +T+IP +N RE+ + Sbjct: 416 LFPAHDDNVLRFLYE-ENQRIEPEWYCPIIPMVLVNGAQGTGTGWSTNIPNYNPRELVKN 474 Query: 192 AIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR--------- 242 LI + + Y+N RG + Sbjct: 475 IKRLIAGE------------------------PQKALAPWYKNFRGKIIQIDPSRFACYG 510 Query: 243 AVWKKEDGAVVISALPHQVSGARVLEQIAAQM---RNKKLPMVDDLRDESDHENPTRLVI 299 V +D + I+ LP + E++ + +KK P++ D ++ +V Sbjct: 511 EVSVLDDNTIEITELPIKQWTQDYKEKVLEGLMESSDKKSPVIVDYKEYHTDTTVKFVVK 570 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNL---LEILSEWLVFRRD 356 + ++++ L L+ M+ D ++ I E+ R++ Sbjct: 571 LSPGKLRELER-GQDLHQVFKLQAVINT-TCMVLFDAAGWLRTYTSPEAITQEFYDSRQE 628 Query: 357 TVRRRLNYRLEKVL---KRLHILEGLLVAFLN-------------IDEVIEIIRNEDEPK 400 +R Y L + KRL ++A +N +D +I++ + D K Sbjct: 629 KYVQRKEYLLGVLQAQSKRLTNQARFILATINNKIVLENKKKTAIVDVLIKMKFDADPVK 688 Query: 401 P-----ALMS-----RFGLTET-------------------------QAEAILELKLRHL 425 L L E + ++ L L L Sbjct: 689 KWKEDQKLKELRESGEIELDEDDLAAVAVEEGEDISSAAKAVETKLSDYDYLVGLALIKL 748 Query: 426 AKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDR 476 ++ E+ K+ E E E L+ + +L +L R Sbjct: 749 SEEEKNKLIKESEEKMAEVRVLEK-----KTWQDLWITDLDNFMSELTSRR 794 >UniRef50_C4MZZ9 Gp52 topoisomerase II, medium subunit n=2 Tax=unclassified T4-like viruses RepID=C4MZZ9_9CAUD Length = 459 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 100/455 (21%), Positives = 201/455 (44%), Gaps = 37/455 (8%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 D L +N L Y+MY + +RA+P + DG KPVQR +V ++ KF K Sbjct: 18 DTFTPRDLKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVVARCLDMARGNKEKFHK 77 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 A G V + HG+ + EA LMA ++ +PL+DGQGN+G+ K AA RY Sbjct: 78 LASIAGGVADLGYHHGEGSAQEAGALMANTWNNNFPLLDGQGNFGSRLVQK-AAASRYIF 136 Query: 123 SRLSKYSELLLSELGQGTADWVP-NFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 +R+ + + ++ P + D + P +P +LLNG +GIA G AT+I Sbjct: 137 ARIGTNFAKVYKD-----TEYAPVHADVEHKPPAFYLPIIPTVLLNGISGIATGYATNIL 191 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PH+ V +A + ++ + + T + V P++ R ++ +I GS + Sbjct: 192 PHSFDSVKKAVLQVLQEKRVTKPK----VAYPEF---------RGDVVEIE---PGSYEL 235 Query: 242 RAVWK-KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESD---HENPTRL 297 R +K + I+ +P++ + ++ + +K DD DE+ + Sbjct: 236 RGTYKFTSRTQMHITEIPYKYDRETYVAKVLDPLEDKGYITYDDDCDENGFGFKVKIRKE 295 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK-NLLEILSEWLVFRRD 356 +P +++M L + NL +I G+ V +++E++ +++ R+ Sbjct: 296 YELPTEENKKHEKIM----KDFGLIERRSQNLTVINEKGKLKVYEDVVELIRDFVEVRKT 351 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTE---TQ 413 V++R++ ++ + + + ++ + + +I+ + + L + Sbjct: 352 FVQKRIDGKIIETEEAFKLALAKATFIKDVIDGVVVIQGKT--RKVLTEELTGNKVYGEY 409 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQ 448 A+ ++ + + H+ E K+ E ++E + Sbjct: 410 ADKLVAMNIFHITSDEAKKLALEAKAKKEEHQYWK 444 >UniRef50_O24308 DNA topoisomerase 2 n=3 Tax=fabids RepID=TOP2_PEA Length = 1462 Score = 286 bits (732), Expect = 2e-75, Method: Composition-based stats. Identities = 81/403 (20%), Positives = 146/403 (36%), Gaps = 46/403 (11%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 A+ + +F + +S ++ + L K + Sbjct: 665 AKLINYKDFVNKELILFSRAD--------------------LFGSFKKKLYKEIKVAQFI 704 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPD-DPKSFAAMRYT 121 V + YH HG+ + ++ MAQ F S L+ G +G + K A+ RY Sbjct: 705 GYVSE-HSAYH-HGEQSLASTIIGMAQDFVGSNNINLLKPNGQFGTCNLGGKDHASARYI 762 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 + LS + L E +++ N DG EP +P +L+NG+ GI G ++ IP Sbjct: 763 YTELSPVTRCLFHEHDDKLLEYL-NEDGKSIEPNWYMPIIPLVLVNGSEGIGTGWSSYIP 821 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 +N RE+ L++ + P + R I K + G G + Sbjct: 822 NYNPREIIANVRRLLNGEELV-------------PMDPWYKGFRGTIEKSAKEG-GYIVN 867 Query: 242 RAVWKKEDGAVVISALPHQVSGARV---LEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 V + ++ I+ LP + LE I N K P+++D R D + + Sbjct: 868 GTVTEIDEQTFRITELPIRKWTQDYKQFLESITDGAPNVKDPLIEDFRQNGD--DAIVDI 925 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRI-NLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 + + LF L + N+++ +G +IL E+ R D Sbjct: 926 EIKMKPEKIATILQEGLFKKFKLTSTISTSNMHLFDAEGNKKFDTPEQILEEFFPLRLDY 985 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK 400 + Y L + + L IL+ + L + I+ N + + Sbjct: 986 YEKSKEYILGNLNRLLLILDNKVRFILGVVNGEIIVSNRKKAE 1028 >UniRef50_UPI00016B2480 DNA gyrase subunit A n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B2480 Length = 417 Score = 285 bits (729), Expect = 5e-75, Method: Composition-based stats. Identities = 82/374 (21%), Positives = 155/374 (41%), Gaps = 26/374 (6%) Query: 394 RNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILAS 453 + ++E + +L++RFGL+E QA+AIL ++LR L LE I E EL ++L+GILA Sbjct: 1 KTQEEAEKSLIARFGLSEIQAKAILAMQLRRLTGLEREAIENELRELLALIEKLKGILAD 60 Query: 454 ERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSA 513 E+++ N++K EL + YGD RRS + E S+ +++P E ++L+ +++ Sbjct: 61 EQEILNIIKNELIEMKEKYGDQRRSKMINH-ELGKFSDEELIPEEDSVVLLTSENYIKRT 119 Query: 514 KGHDIDAP--------GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA-- 563 D G+ K D + + ++ ++F + GR + + +P+A Sbjct: 120 LASDYRKQNRGGKGKRGMTTKETDVIEHMIPAGTHDWLLFFTNRGRVFRLKAYEVPAASL 179 Query: 564 RGQGEPLTGKLTLPPGATVDHMLME----SDDQKLLMASDAGYGFVCTFNDLVARNRAGK 619 + +G L L P + ++ DD L MA+ G D G Sbjct: 180 QAKGVAAVNLLQLQPEEKITAIIKFEKDAKDDGYLFMATVKGTIKKTPVKDYANIRTNGL 239 Query: 620 ALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAE 678 I L + + + +D +L T AG+ + F D + + +G + + + Sbjct: 240 IAIKLDDGDEL-RWIKRSSGNDDILISTSAGQAIRFNEKDARSMGRAARGVRGVRL---- 294 Query: 679 AARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVE 738 R D + + + TL + K ++ + R G ++ + Sbjct: 295 --RPNDSVVGMDIANDDRTLLVISENGYGK--ATKISNFPSHK-RGGVGIKAAVVTAKTG 349 Query: 739 IDSPRRASSGDSEE 752 + D E Sbjct: 350 PIISVKTIQQDDIE 363 Score = 75.3 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 77/212 (36%), Gaps = 15/212 (7%) Query: 482 EREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAV 535 E + + + + + G ++ D + GD + Sbjct: 195 EEKITAIIKFEKDAKDDGYLFMATVKGTIKKTPVKDYANIRTNGLIAIKLDDGDELRWIK 254 Query: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLMESDDQK 593 + N ++ S G++ AR G G + L P +V M + +DD+ Sbjct: 255 RSSGNDDILISTSAGQAIR---FNEKDARSMGRAARGVRGVRLRPNDSVVGMDIANDDRT 311 Query: 594 LLMASDAGYGFVCTFNDLVARNRAG---KALITLPENAHVMPPVVIEDASDMLLAITQAG 650 LL+ S+ GYG ++ + R G KA + + ++ I+ L ++ G Sbjct: 312 LLVISENGYGKATKISNFPSHKRGGVGIKAAVVTAKTGPIISVKTIQQDDIEALLVSTQG 371 Query: 651 RMLMFPVSDLPQLSK-GKGNKIINIPSAEAAR 681 + + + D+P L + +G +I+ ++ Sbjct: 372 QTIRVSLKDIPVLGRTTQGVRIMKTSDDDSVA 403 >UniRef50_UPI0001924D0A PREDICTED: similar to DNA topoisomerase 2 n=1 Tax=Hydra magnipapillata RepID=UPI0001924D0A Length = 1315 Score = 284 bits (727), Expect = 8e-75, Method: Composition-based stats. Identities = 93/486 (19%), Positives = 182/486 (37%), Gaps = 64/486 (13%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGL-NASAKFKKSAR 65 ++ +F + + +S V DR++P + DG KP QR I+Y + G + K + A Sbjct: 813 QIPYSDFIDKDLIFFSN-VDNDRSIPSMIDGFKPSQRMILYCCFKRGRHSKEVKVSQLAG 871 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPD-DPKSFAAMRYTE 122 V + YH HG+++ A++ MAQ F S ++ GN+G K A+ RY Sbjct: 872 YVSENT-DYH-HGEASLQGAIIGMAQNFPGSNNINILVPNGNFGYRRKGGKEHASPRYIF 929 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 + L + + E + + D EP + +P ++NG+ GI G + ++PP Sbjct: 930 TELHPIANYIFREEDDEILKYNYD-DDMKVEPDVFAPIIPLGIINGSQGIGTGFSNNVPP 988 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HN +V LI++ P Y I + Y +R Sbjct: 989 HNPLDVVANLKRLINEKDPVD-------MLPWYNGFKGTIEKNPKATNKY-------IIR 1034 Query: 243 AVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 + + + I +P +E ++M K+ ++ L + + Sbjct: 1035 GKYCIDGNKIHIEDIPI---VNGWIEPYESKMEQKE-------------DDGQELQKLYK 1078 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRI-NLNMIGLDGR-PAVKNLLEILSEWLVFRRDTVRR 360 + ++D+ +N + +S + NLNM G+ ++ ++L E+ +R + ++ Sbjct: 1079 TGVGNLDKFLN-------MTQSLSVTNLNMFNSKGKMTKYNSISDVLYEFYEYRLEMYQK 1131 Query: 361 RLNYRLEKVLKRLHILEGLLVAF------------LNIDEVIEIIRNEDEPKPALMSRFG 408 R + K+ L I + + EVI + + PK A R Sbjct: 1132 RKEFFFLKLQNDLDISTYKVKFIREYLAKTIKIAKKKVVEVIAQLETKGYPKMASDHRLP 1191 Query: 409 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 + + ++ + L + ++ + DQ L + + + EL Sbjct: 1192 MASRSYRYLTDMSIMTLTDDKIKELENNMEHCQMLYDQY---LNTP--IKKIWLNELDEF 1246 Query: 469 AQAYGD 474 Y Sbjct: 1247 LSMYKK 1252 >UniRef50_P27570 DNA topoisomerase 2 n=15 Tax=Trypanosomatidae RepID=TOP2_CRIFA Length = 1239 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 101/472 (21%), Positives = 193/472 (40%), Gaps = 36/472 (7%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 + L + +F +++++ V RA+P DGLKP QR+I++AM + + +AK + + Sbjct: 661 KLLTIGDFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWAMLKRHSSEAAKVAQLSG 719 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFS--YRYPLVDGQGNWGAPDD-PKSFAAMRYTE 122 + +V +H HG+++ E +V MAQ F+ L+ +G +G+ AA RY Sbjct: 720 YISEV-SSFH-HGEASLQETIVKMAQNFTGGNNINLLVPEGQFGSRQQLGNDHAAPRYIF 777 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 ++LS+++ LL E D++ +GT+ EP LP +L NG GI G AT+IP Sbjct: 778 TKLSRFARLLFPEDDDPLLDYIDE-EGTMVEPNHYVPILPLLLCNGAVGIGFGFATNIPS 836 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 + +V+ A A+I+ + ++V + + R ++ G+ Sbjct: 837 FHPLDVSAAVRAMINGESAK-QVVRNLVP---WAVGFQGTVRRGPEKEYIAVGK------ 886 Query: 243 AVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 +G + +S LP S I++ + +V + D S + +IV Sbjct: 887 -YTAHRNGRLHVSELPWMTSIEAFRSHISSLASS---DVVQRIADYSGANHIDIDLIVRE 942 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR--PAVKNLLEILSEWLVFRRDTVRR 360 + + L L + IN + DG P +L +L R D +R Sbjct: 943 GSMTTWAECETDL----ALSQRIYINGTVFSPDGTLSPIDADLSPVLQWHYDRRLDLYKR 998 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEV-IEIIRNEDEPKPALMSRFGLTETQ--AEAI 417 R ++ + L L+ + + I+ + D+ + GL + I Sbjct: 999 RRTRQIGLLEMDLARLQSTRKFVEHFRQGHIDFLAATDDTLTKTCVKLGLVRVDDGYDYI 1058 Query: 418 LELKLRHLAKLEEMKIRGEQSELEKERDQLQG------ILASERKMNNLLKK 463 L+ + K K++ + + + L+ L K + ++ Sbjct: 1059 LKKPITFYTKTSTEKLQADIKKTQDSIAVLKQTTPVKMWLTDLDKFDKTFQE 1110 >UniRef50_Q76Y98 Gp52 topoisomerase II medium subunit n=1 Tax=Aeromonas phage Aeh1 RepID=Q76Y98_9CAUD Length = 438 Score = 281 bits (719), Expect = 8e-74, Method: Composition-based stats. Identities = 107/461 (23%), Positives = 207/461 (44%), Gaps = 33/461 (7%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 + N ++MY I +RALP + DGLKPVQR I++++ + NA +FKK+A G Sbjct: 8 ISSLVNNEAKEFAMYTIEERALPSMVDGLKPVQRYILFSVLK---NAGREFKKNAAVAGV 64 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 + + HG+ A +A LMA ++ +P++ G+GN+G + AA RY + Sbjct: 65 ISEYGYNHGEMAAMDAACLMASTWNNNFPVIQGRGNFGCRAVQEGAAA-RYIFCSKHERF 123 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 E + + DG++ P+ LP +LLNG +GIA G AT I PH+++ VA Sbjct: 124 ESMFK--DMELLE-ESTADGSIL-PRYYLPILPTVLLNGVSGIATGFATKIMPHSVQSVA 179 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED 249 + ++ K + +Q P + + I + K+ G + K Sbjct: 180 KCVEQVLKSGKCDEPE----IQFPKFFGKILSIEGETQSWKV----EGDYELSGKTK--- 228 Query: 250 GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMD 309 ++I+ LP + + + + + K+ DES ++ V D D Sbjct: 229 --LIINELPPKYDRLKYVTHLNKLVETDKIVGY----DESKMKDREFCFKVTLKR--DFD 280 Query: 310 QVMNHLFATTDLEKSYRINLNMIGLDGRPA-VKNLLEILSEWLVFRRDTVRRRLNYRLEK 368 ++ L ++ + +I +G N +++ +++ FR + +++R++ + Sbjct: 281 VSHENIIKVFKLSQNVSQYIRVIDQNGNLKPYDNASDLIVDFVNFRFNVLQKRIDNAIIA 340 Query: 369 VLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPAL--MSRFGLTETQAEAILELKLRHLA 426 ++L + V F+ + +I+ N K + ++ F +T A+ ++++ L H+ Sbjct: 341 TREKLDFAQAK-VDFIKLVLADKIVFNRQTRKQVIEQINAFDELKTYADQLVQMNLYHMT 399 Query: 427 KLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQA 467 + E K+ + +EL+KE D + + RK KE Sbjct: 400 EDEVAKLEKQVAELQKEHDFWKT--TTPRKQYQSDIKEFLK 438 >UniRef50_P07065 DNA topoisomerase medium subunit n=8 Tax=T4-like viruses RepID=TOP5_BPT4 Length = 442 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 99/422 (23%), Positives = 190/422 (45%), Gaps = 28/422 (6%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 L +N L Y+MY + +RA+P + DG KPVQR ++ +L KF K A G Sbjct: 8 LKSIIDNEALAYAMYTVENRAIPNMIDGFKPVQRFVIARALDLARGNKDKFHKLASIAGG 67 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 V + HG+++ +A LMA ++ +PL+DGQGN+G+ K AA RY +R+SK Sbjct: 68 VADLGYHHGENSAQDAGALMANTWNNNFPLLDGQGNFGSRTVQK-AAASRYIFARVSKN- 125 Query: 130 ELLLSELGQGTADWVP-NFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 + + T ++ P + D P +P +LLNG +GIA G AT I PH++ V Sbjct: 126 ---FYNVYKDT-EYAPVHQDKEHIPPAFYLPIIPTVLLNGVSGIATGYATYILPHSVSSV 181 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248 +A + + K T + V+ P++ E I + EIR Y+ Sbjct: 182 KKAVLQALQGKKVTKPK----VEFPEFRGEVVEIDGQYEIRGTYK------------FTS 225 Query: 249 DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308 + I+ +P++ + +I + NK DD E + + + Sbjct: 226 RTQMHITEIPYKYDRETYVSKILDPLENKGFITWDDACGEHGFGFKVKFRKEYSLSD-NE 284 Query: 309 DQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK-NLLEILSEWLVFRRDTVRRRLNYRLE 367 ++ + L + N+ +I G+ V N+++++ +++ R+ V++R++ +++ Sbjct: 285 EERHAKIMKDFGLIERRSQNITVINEKGKLQVYDNVVDLIKDFVEVRKTYVQKRIDNKIK 344 Query: 368 KVLK--RLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHL 425 + RL + + + E++ + E L S+ + + + ++ + + H+ Sbjct: 345 ETESAFRLAFAKAHFIKKVISGEIVVQGKTRKELTEEL-SKIDMYSSYVDKLVGMNIFHM 403 Query: 426 AK 427 Sbjct: 404 TS 405 >UniRef50_Q55BP5 Probable DNA topoisomerase 2 n=1 Tax=Dictyostelium discoideum RepID=TOP2_DICDI Length = 1521 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 109/602 (18%), Positives = 194/602 (32%), Gaps = 140/602 (23%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 ++L +F + +S+ +R++P I DGLK R+ +Y+ + L K + Sbjct: 745 GVKKLTYSDFINKELVLFSIA-DCERSIPNIVDGLKTSHRKTLYSCFKRNLKKEIKVAQL 803 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRY 120 V + YH HG+++ Y +V MAQ F S L++ G++G K ++ RY Sbjct: 804 IGYVSE-HSAYH-HGEASLYSTIVGMAQEFVGSNNINLLNPAGSYGTRIAGGKDCSSARY 861 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 +RL+ + + V + DG +PK +P IL+NG GI G ++ I Sbjct: 862 IHTRLNDIARAVYHADDDPILSCVVD-DGKKVQPKFYIPVIPMILVNGCVGIGTGWSSTI 920 Query: 181 PPHNLREVAQAAIALIDQ-PKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSV 239 P +N R++ Q ID P + G + + G Sbjct: 921 PNYNPRDLIQNMRLAIDGKPLKPIKPWYRGFLGSIEANQGSKVQG------------GQY 968 Query: 240 RMRAVWKK-EDGAVVISALPHQVSGARVLEQIAAQ------------------------- 273 + +WKK D I+ LP E + Sbjct: 969 LSKGIWKKLSDNRFEITELPIGFWTQDYRELLDELETPGTRKKKKEEKEKKAASRKGTKA 1028 Query: 274 -----MRNKKLPM-----------VDDLRDESDHENPTRLVIVPRS-NRVDMDQVMNHLF 316 R+K++ V + S ++ + + +++++V Sbjct: 1029 KPTTTKRSKRVDDDDDNEKVTEATVKSYTNYSSESTIHFIIDTIQPVDEINIEKV----- 1083 Query: 317 ATTDLEKSYR-INLNMIGLDGRPAVKNLLEILSE--------WLVFRRDTVRRRL----- 362 L + N+ + +GR L E R+D + RL Sbjct: 1084 --FKLVSTINETNMVVFDEEGRIQRFATTTALQEHFFPLRIKHYQMRKDFLSERLSEEYS 1141 Query: 363 ------NYRLEKVLKRLHILEGLLVAFLN------IDEVIEIIRNEDEPKPALMSRFGLT 410 + L V K L I V +N D +I N+ + Sbjct: 1142 RLSNKARFILAVVNKELVISNVKKVDLINKLKEMKFDRIINKNSNKSARDKIKKKKNAFD 1201 Query: 411 ETQA----------------------EAILELKLRHLAKLEEMKIRGEQSELEKE----- 443 E A + +L L L L K+ E+ +KE Sbjct: 1202 EEDAAISSDEEKDGAQEEQDDDTKGYDYLLSLPLWSLTLERVKKLIEERDSKKKEWDILL 1261 Query: 444 -----------RDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEH 492 D L+ L + + LK + ++ + R+ + AK +S Sbjct: 1262 STPIQEIYKRDLDALEKALDDQDAYDESLKNQTESLKK------RTKTKALPRAKKISAK 1315 Query: 493 DM 494 + Sbjct: 1316 VV 1317 >UniRef50_A0BK44 Chromosome undetermined scaffold_111, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BK44_PARTE Length = 1196 Score = 271 bits (694), Expect = 5e-71, Method: Composition-based stats. Identities = 100/521 (19%), Positives = 203/521 (38%), Gaps = 64/521 (12%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 + F + +S+ + R++P DGLKP QR+I++ + LN S + K + Sbjct: 344 NVRYRNFVTDCLAMHSISDNL-RSIPSSIDGLKPTQRKIIHTL----LNHSKQEYKVSSL 398 Query: 67 VGDVL--GKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYT 121 G V +YH HG+ + + +V MAQ F S L+ G +G K A RY Sbjct: 399 SGLVTTYAQYH-HGEQSLQQTVVAMAQNFTGSNNINLLLPIGQFGTRSMGGKDAAQARYI 457 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 ++LS + L +E T +++ +G EP LP +L+NG GI G +T +P Sbjct: 458 STKLSSLTTKLFNEDDLHTLNYLDE-EGYTVEPFWFTPILPLVLINGAEGIGTGWSTQVP 516 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 N RE+ Q + + ++L+ +G T + + I +GS Sbjct: 517 NFNPREICQQIKRKLRGEEF--EELVPWYKG---FTGSITAGTNQYIA------KGSFI- 564 Query: 242 RAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 + + I+ +P + S I ++M + ++ D ++ ++ Sbjct: 565 -----QHKNHLYITEIPPKKSVKEYQAFIQSKMEVAEGKSEPEILDMKEYHAGNKVCFEL 619 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEWLVFRRDTV 358 + V + + + L+ + + N++ + + +K N+ EIL E+ R Sbjct: 620 K---VTDEVLKQDIEKYFKLQTTIAM-TNLVLFNEKGLLKRYSNVSEILDEFYQTRIKFY 675 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFL-NIDEVIEI-------------------IRNEDE 398 + R Y L K L +++ ID I++ I ++ Sbjct: 676 QLRKEYLLSKYQNELELVQSKSKFIEGMIDNSIQLRGLKKMEMCKKLQSLGFKGISKMEK 735 Query: 399 PKPALMSR-FGLT--ETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASER 455 K +S+ F E Q + +L + + + ++ + + + +L+ + L +++ Sbjct: 736 VKSTRISKDFDADNLEKQYDYLLSMPMWNFSEEKITAFKQQIKQLQDQITAL-----NKK 790 Query: 456 KMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLP 496 + ++L + QE + + +L Sbjct: 791 TPQQIWSEDLDEFLEELTKVEEQETQEMIKRVEKNAEKLLK 831 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P05653 DNA gyrase subunit A n=10 Tax=cellular organisms... 846 0.0 UniRef50_P0C0R0 DNA gyrase subunit A n=296 Tax=cellular organism... 839 0.0 UniRef50_Q0W7S4 Type II DNA topoisomerase II (Gyrase), subunit A... 836 0.0 UniRef50_Q5HJZ0 DNA gyrase subunit A n=200 Tax=Bacteria RepID=GY... 831 0.0 UniRef50_C9KLW4 DNA gyrase, A subunit n=1 Tax=Mitsuokella multac... 829 0.0 UniRef50_C8WIN1 DNA gyrase, A subunit n=39 Tax=Bacteria RepID=C8... 820 0.0 UniRef50_D1B8A6 DNA gyrase, A subunit n=1 Tax=Thermanaerovibrio ... 819 0.0 UniRef50_P48354 DNA gyrase subunit A n=46 Tax=Bacteria RepID=GYR... 819 0.0 UniRef50_Q8DPM2 DNA gyrase subunit A n=213 Tax=Bacteria RepID=GY... 819 0.0 UniRef50_B8CZP0 DNA gyrase, A subunit n=5 Tax=Bacteria RepID=B8C... 818 0.0 UniRef50_Q1IH79 DNA gyrase subunit A n=5 Tax=Bacteria RepID=Q1IH... 809 0.0 UniRef50_Q9HUK1 DNA topoisomerase 4 subunit A n=318 Tax=Proteoba... 808 0.0 UniRef50_Q2IHQ4 DNA gyrase subunit A n=15 Tax=cellular organisms... 804 0.0 UniRef50_P41513 DNA gyrase subunit A n=98 Tax=Bacteria RepID=GYR... 803 0.0 UniRef50_P48372 DNA gyrase subunit A n=78 Tax=Bacteria RepID=GYR... 801 0.0 UniRef50_C6XXU9 DNA gyrase, A subunit n=14 Tax=Bacteria RepID=C6... 801 0.0 UniRef50_A1V9C1 DNA gyrase subunit A n=18 Tax=Bacteria RepID=A1V... 796 0.0 UniRef50_A9GW54 DNA gyrase subunit A n=2 Tax=Proteobacteria RepI... 795 0.0 UniRef50_B2RJ49 DNA gyrase A subunit n=17 Tax=Bacteria RepID=B2R... 794 0.0 UniRef50_Q55738 DNA gyrase subunit A n=43 Tax=cellular organisms... 794 0.0 UniRef50_P43702 DNA topoisomerase 4 subunit A n=115 Tax=Bacteria... 788 0.0 UniRef50_C8PS29 DNA gyrase, A subunit n=1 Tax=Treponema vincenti... 787 0.0 UniRef50_C9M5P0 DNA gyrase, A subunit n=1 Tax=Jonquetella anthro... 785 0.0 UniRef50_O33926 DNA gyrase subunit A n=8 Tax=Thermotogaceae RepI... 784 0.0 UniRef50_C7H1V9 DNA gyrase, A subunit n=3 Tax=Clostridiales RepI... 784 0.0 UniRef50_C7MEZ8 DNA gyrase subunit A n=21 Tax=Actinobacteridae R... 784 0.0 UniRef50_C6X523 DNA gyrase subunit A n=20 Tax=Bacteria RepID=C6X... 784 0.0 UniRef50_B0MRF5 Putative uncharacterized protein n=2 Tax=Clostri... 781 0.0 UniRef50_A0L827 DNA topoisomerase IV subunit A n=1 Tax=Magnetoco... 781 0.0 UniRef50_C6CYI7 DNA gyrase, A subunit n=9 Tax=Bacillales RepID=C... 780 0.0 UniRef50_D1R591 Putative uncharacterized protein n=1 Tax=Parachl... 779 0.0 UniRef50_A6DH72 DNA gyrase subunit A n=1 Tax=Lentisphaera araneo... 778 0.0 UniRef50_D1Y742 DNA gyrase, A subunit n=1 Tax=Pyramidobacter pis... 777 0.0 UniRef50_Q9RT53 DNA gyrase, subunit A n=2 Tax=Bacteria RepID=Q9R... 777 0.0 UniRef50_B9ZEE7 DNA gyrase, A subunit n=1 Tax=Natrialba magadii ... 774 0.0 UniRef50_Q2S0H7 DNA gyrase, A subunit n=1 Tax=Salinibacter ruber... 772 0.0 UniRef50_C0R046 DNA gyrase subunit A n=2 Tax=Brachyspira RepID=C... 771 0.0 UniRef50_D0LNR4 DNA gyrase, A subunit n=3 Tax=Bacteria RepID=D0L... 770 0.0 UniRef50_D1N7T7 DNA gyrase, A subunit n=1 Tax=Victivallis vadens... 770 0.0 UniRef50_O83051 DNA gyrase subunit A n=6 Tax=Bacteria RepID=GYRA... 770 0.0 UniRef50_O84192 DNA gyrase subunit A n=16 Tax=Bacteria RepID=GYR... 769 0.0 UniRef50_A8G5D2 DNA gyrase/topoisomerase IV, subunit A n=16 Tax=... 768 0.0 UniRef50_C1TNA3 DNA gyrase subunit A n=1 Tax=Dethiosulfovibrio p... 767 0.0 UniRef50_P22446 DNA gyrase subunit A n=3 Tax=Mycoplasma RepID=GY... 766 0.0 UniRef50_B0S912 DNA gyrase subunit A n=6 Tax=Leptospira RepID=B0... 764 0.0 UniRef50_Q9ZLD9 DNA gyrase subunit A n=50 Tax=Campylobacterales ... 764 0.0 UniRef50_P47719 DNA gyrase subunit A n=26 Tax=Bacteria RepID=GYR... 764 0.0 UniRef50_B8FW91 DNA gyrase, A subunit n=2 Tax=Desulfitobacterium... 763 0.0 UniRef50_C8NBL7 Topoisomerase IV subunit A n=1 Tax=Cardiobacteri... 759 0.0 UniRef50_Q1RID9 DNA gyrase subunit A n=218 Tax=Bacteria RepID=GY... 759 0.0 UniRef50_B1ZTK3 DNA gyrase, A subunit n=3 Tax=Verrucomicrobia Re... 758 0.0 UniRef50_C6HYH3 DNA gyrase, A subunit n=1 Tax=Leptospirillum fer... 757 0.0 UniRef50_C6XJ15 DNA gyrase, A subunit n=28 Tax=Bacteria RepID=C6... 755 0.0 UniRef50_P35810 DNA gyrase subunit A n=1 Tax=Fibrobacter succino... 754 0.0 UniRef50_B4W7D2 DNA topoisomerase IV, A subunit n=1 Tax=Brevundi... 754 0.0 UniRef50_C5SLW9 DNA topoisomerase IV, A subunit n=1 Tax=Asticcac... 754 0.0 UniRef50_P57277 DNA gyrase subunit A n=76 Tax=Proteobacteria Rep... 752 0.0 UniRef50_Q2JY71 Type II DNA topoisomerase, A subunit n=10 Tax=Cy... 752 0.0 UniRef50_Q2JQA2 Type II DNA topoisomerase, A subunit n=2 Tax=Chr... 752 0.0 UniRef50_Q45066 DNA topoisomerase 4 subunit A n=136 Tax=Firmicut... 750 0.0 UniRef50_Q5YLB5 DNA gyrase subunit A, chloroplastic/mitochondria... 750 0.0 UniRef50_D1AVF2 DNA gyrase, A subunit n=1 Tax=Streptobacillus mo... 749 0.0 UniRef50_C7M119 DNA gyrase, A subunit n=1 Tax=Acidimicrobium fer... 749 0.0 UniRef50_Q59749 DNA topoisomerase 4 subunit A n=64 Tax=Alphaprot... 748 0.0 UniRef50_A8LLG0 DNA topoisomerase IV, A subunit n=23 Tax=Alphapr... 747 0.0 UniRef50_P48371 DNA gyrase subunit A n=482 Tax=cellular organism... 747 0.0 UniRef50_A5EV71 DNA topoisomerase IV, A subunit n=2 Tax=Gammapro... 747 0.0 UniRef50_Q2NAD1 Type IIA topoisomeraseA subunit n=30 Tax=Alphapr... 744 0.0 UniRef50_UPI0001B9EC7F DNA topoisomerase IV, A subunit n=1 Tax=G... 744 0.0 UniRef50_D1JED8 DNA gyrase subunit A n=1 Tax=uncultured archaeon... 744 0.0 UniRef50_O54478 DNA topoisomerase 4 subunit A n=18 Tax=Alphaprot... 739 0.0 UniRef50_Q1RGX8 DNA topoisomerase 4 subunit A n=15 Tax=Rickettsi... 739 0.0 UniRef50_C5JAG1 DNA topoisomerase IV subunit A n=1 Tax=unculture... 737 0.0 UniRef50_C5JAM2 DNA gyrase subunit A n=1 Tax=uncultured bacteriu... 736 0.0 UniRef50_UPI00016C558B DNA gyrase subunit A n=1 Tax=Gemmata obsc... 736 0.0 UniRef50_D2LZG6 DNA topoisomerase IV, A subunit n=1 Tax=Bacillus... 735 0.0 UniRef50_B5Y5U7 Predicted protein n=1 Tax=Phaeodactylum tricornu... 735 0.0 UniRef50_B8BXG7 DNA topoisomerase IV, ATP/GTP binding site n=1 T... 734 0.0 UniRef50_B2URM6 DNA gyrase, A subunit n=5 Tax=Verrucomicrobia Re... 734 0.0 UniRef50_B5RLZ1 DNA gyrase, subunit A n=5 Tax=Borrelia RepID=B5R... 734 0.0 UniRef50_A4JTQ2 DNA topoisomerase IV subunit A n=34 Tax=Proteoba... 734 0.0 UniRef50_C0ZEN0 DNA topoisomerase IV subunit A n=1 Tax=Brevibaci... 732 0.0 UniRef50_Q2NJM2 DNA gyrase subunit A n=5 Tax=Candidatus Phytopla... 730 0.0 UniRef50_C9Z0I9 GyrA-like gyrase subunit n=9 Tax=Actinomycetales... 730 0.0 UniRef50_Q89AS3 DNA gyrase subunit A n=11 Tax=Proteobacteria Rep... 730 0.0 UniRef50_D0B2I0 DNA topoisomerase IV subunit A n=40 Tax=Rhizobia... 729 0.0 UniRef50_A7HL65 DNA gyrase, A subunit n=4 Tax=Thermotogaceae Rep... 729 0.0 UniRef50_B8CXA6 DNA gyrase subunit A n=1 Tax=Halothermothrix ore... 725 0.0 UniRef50_O51396 DNA gyrase subunit A n=18 Tax=Borrelia burgdorfe... 724 0.0 UniRef50_Q9HJB6 DNA gyrase, subunit A (GyrA) related protein n=5... 722 0.0 UniRef50_Q1D9G9 Type II DNA topoisomerase, A subunit n=3 Tax=Myx... 720 0.0 UniRef50_D2QWS9 DNA gyrase, A subunit n=5 Tax=Planctomycetaceae ... 717 0.0 UniRef50_B9ZQ27 DNA gyrase, A subunit n=1 Tax=Thioalkalivibrio s... 715 0.0 UniRef50_B7KIH9 DNA topoisomerase (ATP-hydrolyzing) n=6 Tax=Cyan... 715 0.0 UniRef50_Q4A7J5 DNA gyrase subunit A n=5 Tax=Mycoplasma hyopneum... 715 0.0 UniRef50_Q2GCH4 DNA gyrase, A subunit n=2 Tax=Neorickettsia RepI... 714 0.0 UniRef50_C6XHT3 DNA topoisomerase IV subunit A n=27 Tax=Alphapro... 713 0.0 UniRef50_D0SBV6 Type IIA topoisomerase n=3 Tax=Gammaproteobacter... 712 0.0 UniRef50_Q1UZ45 DNA gyrase subunit A n=2 Tax=Candidatus Pelagiba... 710 0.0 UniRef50_C7XU56 DNA gyrase, A subunit n=16 Tax=Lactobacillales R... 710 0.0 UniRef50_Q114B8 DNA topoisomerase IV subunit A n=4 Tax=Cyanobact... 709 0.0 UniRef50_A1TLU5 DNA topoisomerase IV subunit A n=22 Tax=Betaprot... 708 0.0 UniRef50_C1EGN9 Predicted protein n=1 Tax=Micromonas sp. RCC299 ... 707 0.0 UniRef50_C8PKZ3 DNA gyrase, A subunit n=2 Tax=Campylobacter RepI... 707 0.0 UniRef50_P48374 DNA topoisomerase 4 subunit A n=17 Tax=Betaprote... 705 0.0 UniRef50_C6RQR3 DNA gyrase, A subunit n=3 Tax=Moraxellaceae RepI... 705 0.0 UniRef50_C5CCL2 DNA topoisomerase IV subunit A n=41 Tax=Actinoba... 704 0.0 UniRef50_A9NF72 DNA topoisomerase IV, subunit A n=1 Tax=Acholepl... 703 0.0 UniRef50_A9F3U1 DNA gyrase subunit A n=3 Tax=Myxococcales RepID=... 703 0.0 UniRef50_Q8CSN8 DNA topoisomerase 4 subunit A n=77 Tax=Bacteria ... 701 0.0 UniRef50_B6BPL3 DNA gyrase, A subunit n=3 Tax=Bacteria RepID=B6B... 700 0.0 UniRef50_P72525 DNA topoisomerase 4 subunit A n=182 Tax=Firmicut... 700 0.0 UniRef50_Q2S2H4 Type II DNA topoisomerase, A subunit n=2 Tax=Rho... 699 0.0 UniRef50_Q21V46 DNA topoisomerase IV subunit A n=83 Tax=Bacteria... 699 0.0 UniRef50_B5Y886 DNA gyrase, A subunit n=1 Tax=Coprothermobacter ... 698 0.0 UniRef50_C5B4N9 DNA gyrase subunit A n=1 Tax=Methylobacterium ex... 693 0.0 UniRef50_D2MM14 DNA topoisomerase IV, A subunit n=2 Tax=Erysipel... 692 0.0 UniRef50_B3TAI1 Putative DNA gyrase/topoisomerase IV, subunit A ... 690 0.0 UniRef50_A4S991 Predicted protein n=1 Tax=Ostreococcus lucimarin... 689 0.0 UniRef50_A0Q573 DNA topoisomerase IV subunit A n=34 Tax=Bacteria... 688 0.0 UniRef50_D2REE0 DNA gyrase, A subunit n=3 Tax=Archaeoglobaceae R... 687 0.0 UniRef50_A6CC19 Type II DNA topoisomerase, A subunit n=3 Tax=Pla... 687 0.0 UniRef50_C5CST5 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Vari... 686 0.0 UniRef50_D1C5K4 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Spha... 686 0.0 UniRef50_C8NZH8 DNA topoisomerase IV, A subunit n=1 Tax=Erysipel... 685 0.0 UniRef50_B5IIX4 DNA gyrase/topoisomerase IV, A subunit domain pr... 685 0.0 UniRef50_A3VFM2 DNA topoisomerase IV, A subunit n=11 Tax=Alphapr... 685 0.0 UniRef50_Q7UU73 DNA gyrase subunit A n=1 Tax=Rhodopirellula balt... 683 0.0 UniRef50_O67108 DNA gyrase subunit A n=2 Tax=Aquificaceae RepID=... 681 0.0 UniRef50_Q2SS33 DNA topoisomerase IV, A subunit n=5 Tax=Mollicut... 680 0.0 UniRef50_D1BTH4 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Acti... 680 0.0 UniRef50_Q2ST76 DNA gyrase, A subunit n=7 Tax=Mollicutes RepID=Q... 678 0.0 UniRef50_B8DTB4 DNA gyrase subunit A n=23 Tax=Actinobacteridae R... 673 0.0 UniRef50_Q5MZD4 DNA gyrase A subunit n=8 Tax=Cyanobacteria RepID... 672 0.0 UniRef50_C1N3Z1 Predicted protein n=2 Tax=cellular organisms Rep... 670 0.0 UniRef50_Q04F36 DNA topoisomerase IV subunit A n=1 Tax=Oenococcu... 667 0.0 UniRef50_A8UVW0 DNA gyrase A subunit n=1 Tax=Hydrogenivirga sp. ... 663 0.0 UniRef50_A9KS51 DNA topoisomerase (ATP-hydrolyzing) n=4 Tax=Firm... 658 0.0 UniRef50_Q98RX7 DNA gyrase A-subunit n=2 Tax=Cryptophyta RepID=Q... 654 0.0 UniRef50_Q7V9E4 DNA gyrase/topoisomerase IV, subunit A n=17 Tax=... 651 0.0 UniRef50_Q0SRA9 DNA gyrase/topoisomerase IV, A subunit family pr... 649 0.0 UniRef50_P73077 DNA topoisomerase 4 subunit A n=5 Tax=Bacteria R... 648 0.0 UniRef50_Q83G39 DNA gyrase subunit A-like protein n=2 Tax=Trophe... 643 0.0 UniRef50_Q98QI8 TOPOISOMERASE IV SUBUNIT A n=1 Tax=Mycoplasma pu... 642 0.0 UniRef50_Q7NB60 ParC/GyrA n=1 Tax=Mycoplasma gallisepticum RepID... 640 0.0 UniRef50_D0RNU6 DNA gyrase subunit A n=1 Tax=alpha proteobacteri... 628 e-178 UniRef50_A5IXX2 Topoisomerase IV subunit A n=2 Tax=Mycoplasma Re... 625 e-177 UniRef50_C3CV72 DNA topoisomerase n=1 Tax=Bacillus thuringiensis... 625 e-177 UniRef50_B5ZBW2 DNA topoisomerase IV, A subunit family protein n... 624 e-177 UniRef50_Q6KHI4 Topoisomerase IV subunit A n=1 Tax=Mycoplasma mo... 624 e-177 UniRef50_C4Z0V3 DNA gyrase subunit A n=29 Tax=Bacteria RepID=C4Z... 621 e-176 UniRef50_B3PLT5 Topoiosmerase IV subunit A n=1 Tax=Mycoplasma ar... 618 e-175 UniRef50_P75352 DNA topoisomerase 4 subunit A n=2 Tax=Mycoplasma... 615 e-174 UniRef50_Q57532 Mle gyrA intein n=207 Tax=cellular organisms Rep... 614 e-174 UniRef50_O52166 Topoisomerase IV subunit n=2 Tax=Mycoplasma homi... 614 e-174 UniRef50_C5J6X2 Topoisomerase IV subunit A n=1 Tax=Mycoplasma co... 612 e-173 UniRef50_C6WIH8 DNA topoisomerase (ATP-hydrolyzing) n=15 Tax=Act... 596 e-169 UniRef50_Q4A8X9 Topoisomerase IV subunit A n=3 Tax=Mycoplasma hy... 594 e-168 UniRef50_Q4A6Z3 Topoisomerase IV subunit A n=1 Tax=Mycoplasma sy... 588 e-166 UniRef50_C7H694 DNA gyrase subunit A n=11 Tax=Bacteria RepID=C7H... 587 e-166 UniRef50_A2BND1 DNA gyrase/topoisomerase IV, subunit A n=7 Tax=P... 585 e-165 UniRef50_A7VBP9 Putative uncharacterized protein n=2 Tax=Clostri... 576 e-162 UniRef50_A6TSS8 DNA topoisomerase (ATP-hydrolyzing) n=7 Tax=Clos... 548 e-154 UniRef50_A7AVY4 DNA gyrase A subunit, putative n=5 Tax=cellular ... 540 e-152 UniRef50_B1BBK7 DNA topoisomerase n=5 Tax=root RepID=B1BBK7_CLOBO 531 e-149 UniRef50_B9SK06 DNA gyrase subunit A, chloroplast/mitochondrial,... 523 e-147 UniRef50_A4T3N2 DNA gyrase/topoisomerase IV, subunit A n=6 Tax=M... 502 e-140 UniRef50_UPI0001976864 DNA gyrase/topoisomerase IV, subunit A n=... 498 e-139 UniRef50_C0QRN3 DNA gyrase subunit A n=9 Tax=cellular organisms ... 496 e-138 UniRef50_B1ZME1 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Opit... 434 e-120 UniRef50_C3JAA3 DNA gyrase subunit A n=3 Tax=Bacteria RepID=C3JA... 432 e-119 UniRef50_D1QVZ0 DNA topoisomerase 4 subunit A n=2 Tax=Prevotella... 432 e-119 UniRef50_A4CLF9 DNA topoisomerase IV subunit A n=21 Tax=Bacteria... 430 e-118 UniRef50_D1N6B5 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Bact... 428 e-118 UniRef50_C9RLW5 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Fibr... 424 e-117 UniRef50_A5K033 DNA GyrAse a-subunit, putative n=2 Tax=Plasmodiu... 421 e-116 UniRef50_B3LCM1 Dna gyrase a-subunit, putative n=1 Tax=Plasmodiu... 419 e-115 UniRef50_Q4N468 DNA gyrase subunit A, putative n=2 Tax=Theileria... 418 e-115 UniRef50_B4D1N9 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Chth... 410 e-113 UniRef50_C6XSV0 DNA topoisomerase (ATP-hydrolyzing) n=61 Tax=Bac... 410 e-112 UniRef50_B9XEN7 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=bact... 403 e-110 UniRef50_A6DRS7 DNA topoisomerase IV subunit A n=1 Tax=Lentispha... 400 e-109 UniRef50_C1E5N4 DNA topoisomerase 2 n=1 Tax=Micromonas sp. RCC29... 398 e-109 UniRef50_Q8I0X3 DNA gyrase subunit A;evidence=inferred from dire... 397 e-109 UniRef50_Q9Y8G8 DNA topoisomerase 2 n=79 Tax=cellular organisms ... 397 e-109 UniRef50_D0NA12 DNA topoisomerase 2 n=1 Tax=Phytophthora infesta... 396 e-108 UniRef50_A8PTE9 DNA topoisomerase 2 n=1 Tax=Malassezia globosa C... 395 e-108 UniRef50_Q02880 DNA topoisomerase 2-beta n=175 Tax=Eukaryota Rep... 395 e-108 UniRef50_Q8SS63 DNA topoisomerase 2 n=1 Tax=Encephalitozoon cuni... 395 e-108 UniRef50_P41001 DNA topoisomerase 2 n=10 Tax=Eukaryota RepID=TOP... 394 e-108 UniRef50_P11388 DNA topoisomerase 2-alpha n=47 Tax=Eukaryota Rep... 389 e-106 UniRef50_Q73KU9 Topoisomerase IV, A subunit, putative n=2 Tax=Tr... 389 e-106 UniRef50_Q4RIW2 DNA topoisomerase 2 (Fragment) n=1 Tax=Tetraodon... 388 e-106 UniRef50_D1ZCL6 DNA topoisomerase 2 n=6 Tax=Sordariomyceta RepID... 388 e-106 UniRef50_B9PK68 DNA topoisomerase 2 n=3 Tax=Toxoplasma gondii Re... 388 e-106 UniRef50_A7ANB1 DNA topoisomerase 2 n=3 Tax=Piroplasmida RepID=A... 387 e-106 UniRef50_B7XIW3 DNA topoisomerase 2 n=1 Tax=Enterocytozoon biene... 386 e-105 UniRef50_Q1NV80 DNA gyrase/topoisomerase IV, subunit A n=4 Tax=D... 382 e-104 UniRef50_D2QEJ6 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Bact... 378 e-103 UniRef50_C9S837 DNA topoisomerase 2 n=2 Tax=Sordariomycetes RepI... 378 e-103 UniRef50_A5E7X7 DNA topoisomerase 2 n=4 Tax=Saccharomycetaceae R... 376 e-102 UniRef50_B6K4K4 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces ... 375 e-102 UniRef50_Q6PUA3 DNA topoisomerase 2 n=4 Tax=Tetrahymena thermoph... 374 e-102 UniRef50_P06786 DNA topoisomerase 2 n=27 Tax=Fungi/Metazoa group... 370 e-101 UniRef50_D2UZM0 DNA topoisomerase II n=1 Tax=Naegleria gruberi R... 370 e-100 UniRef50_Q5KSK9 DNA topoisomerase 2 n=5 Tax=Basidiomycota RepID=... 370 e-100 UniRef50_D0MV61 DNA topoisomerase 2 n=2 Tax=Eukaryota RepID=D0MV... 368 e-100 UniRef50_O41065 A583L protein n=7 Tax=Chlorovirus RepID=O41065_P... 368 e-100 UniRef50_Q7YZS4 DNA topoisomerase 2 n=1 Tax=Physarum polycephalu... 368 e-100 UniRef50_P08096 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces ... 367 e-100 UniRef50_B7G2K9 DNA topoisomerase 2 (Fragment) n=1 Tax=Phaeodact... 367 e-100 UniRef50_A4HGT2 DNA topoisomerase 2 n=11 Tax=Trypanosomatidae Re... 365 4e-99 UniRef50_B8C981 DNA topoisomerase 2 (Fragment) n=1 Tax=Thalassio... 363 2e-98 UniRef50_B0EP10 DNA topoisomerase 2 n=3 Tax=Entamoeba RepID=B0EP... 362 3e-98 UniRef50_P30182 DNA topoisomerase 2 n=6 Tax=Eukaryota RepID=TOP2... 361 4e-98 UniRef50_B3H4G2 DNA topoisomerase 2 n=14 Tax=Magnoliophyta RepID... 361 4e-98 UniRef50_D2V5K5 DNA topoisomerase II n=1 Tax=Naegleria gruberi R... 360 9e-98 UniRef50_P90520 DNA topoisomerase 2, mitochondrial n=1 Tax=Dicty... 358 3e-97 UniRef50_O51066 DNA topoisomerase 4 subunit A n=20 Tax=Borrelia ... 358 5e-97 UniRef50_A7TEE2 DNA topoisomerase 2 n=1 Tax=Vanderwaltozyma poly... 355 4e-96 UniRef50_C3GSY0 DNA gyrase subunit A n=3 Tax=Bacillus thuringien... 353 2e-95 UniRef50_C7U0P4 DNA topoisomerase II n=2 Tax=unclassified Phycod... 351 4e-95 UniRef50_Q5CQG8 DNA topoisomerase 2 n=4 Tax=Apicomplexa RepID=Q5... 346 2e-93 UniRef50_C3YYJ6 Putative uncharacterized protein n=1 Tax=Branchi... 345 4e-93 UniRef50_A0C0L0 DNA topoisomerase 2 n=3 Tax=Paramecium tetraurel... 344 5e-93 UniRef50_C5KAQ6 DNA topoisomerase 2 n=1 Tax=Perkinsus marinus AT... 344 6e-93 UniRef50_P34030 DNA gyrase subunit A (Fragment) n=704 Tax=Bacter... 339 3e-91 UniRef50_Q27537 Chromosome instability 4 n=3 Tax=Chromadorea Rep... 339 3e-91 UniRef50_UPI0001924D0A PREDICTED: similar to DNA topoisomerase 2... 337 9e-91 UniRef50_O24308 DNA topoisomerase 2 n=3 Tax=fabids RepID=TOP2_PEA 332 3e-89 UniRef50_P27570 DNA topoisomerase 2 n=15 Tax=Trypanosomatidae Re... 331 6e-89 UniRef50_C4PNH1 DNA gyrase subunit A n=8 Tax=Chlamydia trachomat... 330 1e-88 UniRef50_P34534 Putative DNA topoisomerase 2, mitochondrial n=5 ... 329 2e-88 UniRef50_Q04PE8 DNA topoisomerase (ATP-hydrolyzing), subunit A n... 327 8e-88 UniRef50_A0BK44 Chromosome undetermined scaffold_111, whole geno... 323 1e-86 UniRef50_D2XAH7 DNA topoisomerase II n=1 Tax=Marseillevirus RepI... 323 2e-86 UniRef50_Q9QSK1 DNA topoisomerase 2 n=1 Tax=Invertebrate iridesc... 322 3e-86 UniRef50_A8Q6X4 DNA topoisomerase 2 n=1 Tax=Brugia malayi RepID=... 322 3e-86 UniRef50_Q0QCM0 GyrA (Fragment) n=297 Tax=Bacteria RepID=Q0QCM0_... 321 5e-86 UniRef50_C4R475 DNA topoisomerase 2 n=1 Tax=Pichia pastoris GS11... 320 1e-85 UniRef50_Q55BP5 Probable DNA topoisomerase 2 n=1 Tax=Dictyosteli... 319 3e-85 UniRef50_Q252N7 DNA gyrase subunit A n=9 Tax=Chlamydiales RepID=... 318 5e-85 UniRef50_Q8HFR9 DNA topoisomerase 2 n=1 Tax=Bodo saltans RepID=Q... 317 1e-84 UniRef50_Q6RCM1 DNA topoisomerase 2 n=2 Tax=Trichomonas vaginali... 317 1e-84 UniRef50_B2ZYK7 Type IIA topoisomerase n=1 Tax=Ralstonia phage R... 315 4e-84 UniRef50_Q5UQE6 DNA topoisomerase 2 n=3 Tax=root RepID=TOP2_MIMIV 312 3e-83 UniRef50_D2TEU4 Putative DNA topoisomerase n=2 Tax=dsDNA viruses... 312 4e-83 UniRef50_UPI000194EBBC PREDICTED: similar to putative DNA gyrase... 310 1e-82 UniRef50_Q6WHM1 Topoisomerase II small subunit n=1 Tax=Vibrio ph... 308 4e-82 UniRef50_D0HVU0 Topoisomerase IV subunit A n=3 Tax=Vibrio RepID=... 308 4e-82 Sequences not found previously or not previously below threshold: >UniRef50_P05653 DNA gyrase subunit A n=10 Tax=cellular organisms RepID=GYRA_BACSU Length = 821 Score = 846 bits (2185), Expect = 0.0, Method: Composition-based stats. Identities = 254/770 (32%), Positives = 431/770 (55%), Gaps = 38/770 (4%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + + + ++L+Y+M VI+ RALP + DGLKPV RRI+YAM++LG+ + +KKS Sbjct: 8 QVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKPYKKS 67 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VG+V+GKYHPHGDSA YE+MV MAQ F+YRY LVDG GN+G+ D S AAMRYTE+ Sbjct: 68 ARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDG-DSAAAMRYTEA 126 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 R+SK S +L ++ + T D+ N+DG+ +EP ++P+R PN+L+NG GIAVGMAT+IPPH Sbjct: 127 RMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNIPPH 186 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 L E+ +A+ + P T+ +L++++ GPD+PT +I+ R+ IRK YE+GRGS+ +RA Sbjct: 187 QLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQIL-GRSGIRKAYESGRGSITIRA 245 Query: 244 VWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + E ++++ LP+QV+ A+++E+IA +R+KK+ + DLRDESD ++ Sbjct: 246 KAEIEQTSSGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMRIVI 305 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + + + ++N+L+ T L+ S+ INL + +DG+P V L + L +L ++ + Sbjct: 306 EI--RRDANANVILNNLYKQTALQTSFGINL-LALVDGQPKVLTLKQCLEHYLDHQKVVI 362 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAE 415 RRR Y L K R HILEGL VA ++D VI +IRN + A L+ +F LTE QA+ Sbjct: 363 RRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQFSLTEKQAQ 422 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 AIL+++L+ L LE KI E L K +L+ ILA+E K+ ++++EL + + D+ Sbjct: 423 AILDMRLQRLTGLEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDE 482 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS--------AKGHDIDAPGLNYKA 527 RR+ + + + D++ E + + L+ G+V+ K G+ Sbjct: 483 RRTEIVTSGLET-IEDEDLIERENIVVTLTHNGYVKRLPASTYRSQKRGGKGVQGMGTNE 541 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS--ARGQGEPLTGKLTLPPGATVDHM 585 D + + ++ ++F + G+ Y +P +G P+ L + G ++ + Sbjct: 542 DDFVEHLISTSTHDTILFFSNKGKVYRAKGYEIPEYGRTAKGIPIINLLEVEKGEWINAI 601 Query: 586 LMESD---DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM 642 + ++ + L + G + + G ++L E+ +M + D + Sbjct: 602 IPVTEFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALSLREDDELMGVRL-TDGTKQ 660 Query: 643 LLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 ++ T+ G ++ FP +D+ ++ + G K I + +D + + +L +S + I Sbjct: 661 IIIGTKNGLLIRFPETDVREMGRTAAGVKGITLTD------DDVVVGMEILEEESHVLIV 714 Query: 702 VGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K K P E + T RG +G ++ + + +A+ G+ + Sbjct: 715 TEKGYGKRTPAEEYR-TQSRGGKG--LKTAKITENNGQLVAVKATKGEED 761 Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 10/217 (4%) Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFK 532 +++ E A+ +E ++ G + L+ + D Sbjct: 591 EVEKGEWINAIIPVTEFNAELYLFFTTKHGVSKRTSLSQFANIRNNGLIALSLREDDELM 650 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQ 592 + ++ G + G+ +TL V M + ++ Sbjct: 651 GVRLTDGTKQIIIGTKNGLLIRFPETDVREM-GRTAAGVKGITLTDDDVVVGMEILEEES 709 Query: 593 KLLMASDAGYGFVCTFNDLVARNRAGK--ALITLPENAHVMPPVVIEDASDMLLAITQAG 650 +L+ ++ GYG + ++R GK + EN + V + L+ IT +G Sbjct: 710 HVLIVTEKGYGKRTPAEEYRTQSRGGKGLKTAKITENNGQLVAVKATKGEEDLMIITASG 769 Query: 651 RMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGL 686 ++ ++D+ + +G ++I + E + Sbjct: 770 VLIRMDINDISITGRVTQGVRLIRMAEEEHVATVALV 806 >UniRef50_P0C0R0 DNA gyrase subunit A n=296 Tax=cellular organisms RepID=GYRA_STAES Length = 893 Score = 839 bits (2167), Expect = 0.0, Method: Composition-based stats. Identities = 268/771 (34%), Positives = 422/771 (54%), Gaps = 36/771 (4%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + ++L+Y+M VI+ RALP + DGLKPV RRI+Y ++E G+ +KKS Sbjct: 8 RINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKS 67 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VGDV+GKYHPHGDS+ YEAMV MAQ FSYRYPLVDGQGN+G+ D AAMRYTE+ Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDG-DGAAAMRYTEA 126 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 R++K + LL ++ + T D++ N+DG +EP +LPAR PN+L+NG GIAVGMAT+IPPH Sbjct: 127 RMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPH 186 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL EV ++L P T+++L++ +QGPD+PT ++ ++ IR+ YE GRGS++MR+ Sbjct: 187 NLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAG-LVLGKSGIRRAYETGRGSIQMRS 245 Query: 244 VWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + E+ +V++ +P QV+ AR++E+IA +R+KK+ + DLRDE+ R+V Sbjct: 246 RAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVV 305 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 I R + + ++N+L+ T L+ S+ +N+ + ++GRP + NL E L +L ++ V Sbjct: 306 IDVRKD-ANASVILNNLYKQTPLQTSFGVNM-IALVNGRPKLINLKEALIHYLEHQKTVV 363 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAE 415 RRR Y L+K R HILEGL +A +IDE+I IR D K A L RF LTE QA+ Sbjct: 364 RRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTERQAQ 423 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 AIL+++LR L LE KI E +EL + +L+ ILA E + L++ EL + +GD+ Sbjct: 424 AILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERFGDE 483 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI--------DAPGLNYKA 527 RR+ +Q + + + D++P E + I LS +++ G+N Sbjct: 484 RRTEIQLGG-LEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLD 542 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS--ARGQGEPLTGKLTLPPGATVDHM 585 D V ++ V+F + GR Y + +P + +G P+ + L T+ M Sbjct: 543 EDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTM 602 Query: 586 LMESD----DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASD 641 + D + L+ A+ G + ++ N+ GK I E+ ++ V + ++ Sbjct: 603 IAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELI-AVRLTTGNE 661 Query: 642 MLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI 700 +L T ++ F S L L + G K I++ + G D + + + Sbjct: 662 DILIGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVADS----ESEDEVLV 717 Query: 701 HVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K P + RG +G ++ +R +G+ + Sbjct: 718 VTENGYGKRTPVSEYR-LSNRGGKG--IKTATITERNGNIVCITTVTGEED 765 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 34/216 (15%), Positives = 81/216 (37%), Gaps = 12/216 (5%) Query: 482 EREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAV 535 + + ++ D+ E + ++ G V+ + + +N+K D A Sbjct: 596 DETISTMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVR 655 Query: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQK-- 593 N+ ++ + TL G+ ++L G TV + + + + Sbjct: 656 LTTGNEDILIGTAHASLIRFSESTLRPL-GRTAAGVKGISLREGDTVVGLDVADSESEDE 714 Query: 594 LLMASDAGYGFVCTFNDLVARNRAGKAL--ITLPENAHVMPPVVIEDASDMLLAITQAGR 651 +L+ ++ GYG ++ NR GK + T+ E + + + L+ +T AG Sbjct: 715 VLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIVCITTVTGEEDLMVVTNAGV 774 Query: 652 MLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGL 686 ++ V D+ Q + G +++ + + + Sbjct: 775 IIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKV 810 >UniRef50_Q0W7S4 Type II DNA topoisomerase II (Gyrase), subunit A n=17 Tax=cellular organisms RepID=Q0W7S4_UNCMA Length = 826 Score = 836 bits (2160), Expect = 0.0, Method: Composition-based stats. Identities = 257/771 (33%), Positives = 416/771 (53%), Gaps = 39/771 (5%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + + + E + +Y++Y+M VI+ RALP + DGLKPV RR +Y M ELG +KK Sbjct: 19 ETLLPVQIEEEMKRSYIDYAMSVIVGRALPDVRDGLKPVHRRCLYGMYELGNTHDKPYKK 78 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SAR VGDV+GKYHPHGD+A Y+ +V MAQ FS RY LVDGQGN+G+ D AAMRYTE Sbjct: 79 SARVVGDVMGKYHPHGDAAIYDTIVRMAQDFSLRYTLVDGQGNFGSIDG-DGAAAMRYTE 137 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 RL + +E +L++L + T D+ PNFD TL+EP +LPARLPN+L+NG++GIAVGMAT+IPP Sbjct: 138 VRLERIAEEILADLDKETVDFAPNFDETLKEPVVLPARLPNLLINGSSGIAVGMATNIPP 197 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HNL E+ IA+ID P+ +LL+ V+GPD+PT I + I++ Y GRGS+RMR Sbjct: 198 HNLGEIVDGTIAVIDNPEIEPIELLNYVKGPDFPTAGFI-YGKEGIKEAYLTGRGSIRMR 256 Query: 243 AVWKKEDGA----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 A + D ++++ +P+ V+ AR++E IA +++KK+ + DLRDESD + ++ Sbjct: 257 AKAEIVDENGKMSIIVTEIPYMVNKARLIESIADLVKDKKIEGISDLRDESDRDGMRIVI 316 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + + + + ++N LF T +E ++ +N N+ +D P +L E + ++ R++ V Sbjct: 317 ELKK--AANANVILNQLFKHTQMESTFGVN-NIALVDNTPMTLSLKETIGYFIKHRQEVV 373 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAE 415 RR + L+K R HIL GLL+A NID+ + IIR N DE K LM ++GL++ Q+ Sbjct: 374 TRRSQFELKKAQAREHILAGLLIALTNIDDFVRIIRGSANADEAKATLMEKYGLSDEQSR 433 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 AIL+++L L LE KI E+++L KE L +LAS + + +++K EL YGD+ Sbjct: 434 AILDMRLARLTALERQKIDDERADLIKEIAHLNEVLASPQMVLDIIKAELLDMKAKYGDE 493 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GLNYKA 527 RR+ + E A + + D++P E V + +S G+++ G+ K Sbjct: 494 RRTKIVES--AGEIVDEDLIPVENVVVTISNTGYIKRMPVDTYRTQRRGGVGIVGMETKE 551 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP---SARGQGEPLTGKLTLPPGATVDH 584 D ++ ++F + G+ Y++ +P S + +G+ + + + PG ++ Sbjct: 552 EDFVVDLFVASTHDNILFFSNKGKVYSLKVYEIPPAASRQARGKAIINLINIEPGEAINA 611 Query: 585 MLM---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASD 641 M+ D L+M + G + G I L ++ + + S Sbjct: 612 MIPIKTFDDQHFLVMCTREGTIKKTALSAFQNIRSTGIIAIGLESGDELISV-KMTNGSQ 670 Query: 642 MLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI 700 +L T+ G+ F S++ + + G I + + + + ++ P ++ Sbjct: 671 EVLIATRNGKCNRFSESEVRTMGRPAMGVIGIRLTENDK------VIAMEIVSPGQSVLT 724 Query: 701 HVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K P E RG +G M ++ R + D + Sbjct: 725 ICENGFGKRTPIEEYTAH-HRGGQG--MINIKTTLRNGAVVAVISVMPDDQ 772 Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 79/226 (34%), Gaps = 14/226 (6%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKA 533 ++ E AM + ++ ++ G ++ + ++GD + Sbjct: 603 IEPGEAINAMIPIKTFDDQHFLVMCTREGTIKKTALSAFQNIRSTGIIAIGLESGDELIS 662 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKL--TLPPGATVDHMLMESDD 591 +Q V+ G+ + R G P G + L V M + S Sbjct: 663 VKMTNGSQEVLIATRNGKCNRFSESEV---RTMGRPAMGVIGIRLTENDKVIAMEIVSPG 719 Query: 592 QKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAH--VMPPVVIEDASDMLLAITQA 649 Q +L + G+G + A +R G+ +I + + V+ D ++ ++ Sbjct: 720 QSVLTICENGFGKRTPIEEYTAHHRGGQGMINIKTTLRNGAVVAVISVMPDDQIVIASKE 779 Query: 650 GRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPP 694 G M V+D+P++ + +G +++ + ++ L Sbjct: 780 GMMTRMNVTDIPEIGRNTQGVRVMKMRPEDSVVAVARLVSEKKEDE 825 Score = 43.0 bits (100), Expect = 0.045, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 45/151 (29%), Gaps = 8/151 (5%) Query: 603 GFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQ 662 D+ A+ + + ++ +I + +++ I+ G + PV Sbjct: 478 IIKAELLDMKAKYGDERRTKIVESAGEIVDEDLIPVEN-VVVTISNTGYIKRMPVDTYRT 536 Query: 663 LSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGER 721 +G G + ED + L+V + K K+ R Sbjct: 537 QRRGGVGIVGMETKE------EDFVVDLFVASTHDNILFFSNKGKVYSLKVYEIPPAASR 590 Query: 722 GRRGTLMRGLQRIDRVEIDSPRRASSGDSEE 752 RG + L I+ E + ++ Sbjct: 591 QARGKAIINLINIEPGEAINAMIPIKTFDDQ 621 >UniRef50_Q5HJZ0 DNA gyrase subunit A n=200 Tax=Bacteria RepID=GYRA_STAAC Length = 887 Score = 831 bits (2146), Expect = 0.0, Method: Composition-based stats. Identities = 267/771 (34%), Positives = 413/771 (53%), Gaps = 36/771 (4%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + ++L+Y+M VI+ RALP + DGLKPV RRI+Y ++E G+ +KKS Sbjct: 8 RINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKS 67 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VGDV+GKYHPHGDS+ YEAMV MAQ FSYRYPLVDGQGN+G+ D AAMRYTE+ Sbjct: 68 ARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDG-DGAAAMRYTEA 126 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 R++K + LL ++ + T D++ N+DG +EP +LPAR PN+L NG +GIAVGMAT+IPPH Sbjct: 127 RMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPH 186 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL E+ ++L P ++ +L++ ++GPD+PT I+ ++ IR+ YE GRGS++MR+ Sbjct: 187 NLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLIL-GKSGIRRAYETGRGSIQMRS 245 Query: 244 VWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 E+ +V++ +P QV+ AR++E+IA +R+KK+ + DLRDE+ R+V Sbjct: 246 RAVIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVV 305 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 I R + + ++N+L+ T L+ S+ +N+ + ++GRP + NL E L +L ++ V Sbjct: 306 IDVRKD-ANASVILNNLYKQTPLQTSFGVNM-IALVNGRPKLINLKEALVHYLEHQKTVV 363 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAE 415 RRR Y L K R HILEGL +A +IDE+I IR D +L RF L+E QA+ Sbjct: 364 RRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQ 423 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 AIL+++LR L LE KI E +EL +L+ ILA E + L++ EL +GDD Sbjct: 424 AILDMRLRRLTGLERDKIEAEYNELLNYISELEAILADEEVLLQLVRDELTEIRDRFGDD 483 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI--------DAPGLNYKA 527 RR+ +Q + + D++P E + I LS +++ G+N Sbjct: 484 RRTEIQLGGFE-NLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLE 542 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS--ARGQGEPLTGKLTLPPGATVDHM 585 D V ++ V+F + GR Y + +P + +G P+ + L + M Sbjct: 543 EDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEVISTM 602 Query: 586 LMESD----DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASD 641 + D D L+ A+ G ++ NR GK I+ E+ ++ V + + Sbjct: 603 IAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELI-AVRLTSGQE 661 Query: 642 MLLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI 700 +L T ++ FP S L L + G K I + + G D V + + Sbjct: 662 DILIGTSHASLIRFPESTLRPLGRTATGVKGITLREGDEVVGLDVAHANSV----DEVLV 717 Query: 701 HVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K P + RG +G ++ +R +G+ + Sbjct: 718 VTENGYGKRTPVNDYR-LSNRGGKG--IKTATITERNGNVVCITTVTGEED 765 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 34/219 (15%), Positives = 78/219 (35%), Gaps = 16/219 (7%) Query: 482 EREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAV 535 + + ++ D+ + + ++ G V+ + + ++++ D A Sbjct: 596 DEVISTMIAVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNGKIAISFREDDELIAVR 655 Query: 536 KGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDH--MLMESDD 591 + ++ S TL G +TL G V + + Sbjct: 656 LTSGQEDILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGLDVAHANSV 712 Query: 592 QKLLMASDAGYGFVCTFNDLVARNRAGKAL--ITLPENAHVMPPVVIEDASDMLLAITQA 649 ++L+ ++ GYG ND NR GK + T+ E + + + L+ +T A Sbjct: 713 DEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNA 772 Query: 650 GRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLA 687 G ++ V+D+ Q + G ++I + + + Sbjct: 773 GVIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVK 811 >UniRef50_C9KLW4 DNA gyrase, A subunit n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KLW4_9FIRM Length = 808 Score = 829 bits (2142), Expect = 0.0, Method: Composition-based stats. Identities = 253/770 (32%), Positives = 414/770 (53%), Gaps = 39/770 (5%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + L +N+Y++Y+M VI+ RALP + DGLKPV RRI+YAM E G+ ++ +KKS Sbjct: 7 KIVPVNLEHEMKNSYIDYAMSVIVARALPDVRDGLKPVHRRILYAMQEAGMGSNKPYKKS 66 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VG+VLGKYHPHGDS+ Y+A+V MAQ FS RY L DG GN+G+ D AAMRYTE Sbjct: 67 ARIVGEVLGKYHPHGDSSVYDAIVRMAQDFSMRYMLADGHGNFGSVDG-DPAAAMRYTEV 125 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 R+SK +EL+L ++ + T D+ PN+D +L+EP++LPA+ P +L+NGT+GIAVGMAT+IPPH Sbjct: 126 RMSKIAELMLQDIDKETVDFTPNYDESLKEPEVLPAKFPQLLVNGTSGIAVGMATNIPPH 185 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 N+ EV + LID P T+D L+ +++GPD+PT I+ + IR+ Y GRG ++MRA Sbjct: 186 NMCEVIDGTLMLIDHPDATIDDLMKVIKGPDFPTAGLIL-GQDGIRQAYTTGRGVIKMRA 244 Query: 244 VWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + E ++++ LP+QV+ AR++E+IA +R+K++ + L DESD ++ Sbjct: 245 NARIETLSNGKPRIIVTELPYQVNKARLVEKIAQLVRDKQIEGITALNDESDRGGMRIVI 304 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + + + ++N L+ T L+ S+ + + + +DG+P + NL E+L ++ + D + Sbjct: 305 DL--RRDANANVILNQLYKHTQLQDSFGVIM-LALVDGKPKILNLKEVLHYYIAHQEDVI 361 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQAE 415 RR Y L+K R HILEGL +A ++D VI IR D + AL+S F L+E QA+ Sbjct: 362 TRRTRYDLKKAEARAHILEGLTIALDHLDAVITTIRESRTADIARAALISGFKLSEKQAQ 421 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 AIL+L+L+ L LE KI E E+ K ++ + ILA E ++ ++K EL+A +GD Sbjct: 422 AILDLRLQRLTGLEREKIEEEYQEVLKAIEEYKAILADEGRILAIIKDELKAVKAKFGDA 481 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GLNYKA 527 RR+ L + + D++ E V I L+ +++ G+ K Sbjct: 482 RRTRLT--VDTSEIDVEDLIAEEDVVITLTHNNYIKRMALDTYRRQNRGGKGIKGMPTKE 539 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHM 585 D + + ++ ++F + GR Y + + A +G + L L + + Sbjct: 540 KDFVENLLITTTHHTILFFTNRGRVYHLKAYEIAEASRAAKGTAIINLLQLEKDEKITAV 599 Query: 586 LMES---DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM 642 + D L MA+ G + + ++ G I L ++ ++ D Sbjct: 600 IQVKGFNPDAYLFMATKKGIVKKTSLVEFKNLHKGGLNAINLDDDDELIGVKF-TDGERD 658 Query: 643 LLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 ++ T+ G ++F D+ + + +G K I++ + G D L+ P + + Sbjct: 659 MILGTKWGMAIVFGEDDVRAMGRAARGVKGISLNDGDEVIGMDTLS------PNAEVLTV 712 Query: 702 VGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 + K + RG +G + L+ ++ R D E Sbjct: 713 TAEGYGKRTETSEYRAQ-NRGGKG--LINLKVTEKTGDVIGLRVVHPDQE 759 Score = 85.4 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 79/220 (35%), Gaps = 18/220 (8%) Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFK 532 L++ E+ A+ + + + ++ G V+ + +N D Sbjct: 589 QLEKDEKITAVIQVKGFNPDAYLFMATKKGIVKKTSLVEFKNLHKGGLNAINLDDDDELI 648 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLMESD 590 + ++ G + + R G G ++L G V M S Sbjct: 649 GVKFTDGERDMILGTKWGMAIVFGEDDV---RAMGRAARGVKGISLNDGDEVIGMDTLSP 705 Query: 591 DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP----ENAHVMPPVVIEDASDMLLAI 646 + ++L + GYG ++ A+NR GK LI L V+ V+ L+ I Sbjct: 706 NAEVLTVTAEGYGKRTETSEYRAQNRGGKGLINLKVTEKTGD-VIGLRVVH-PDQELMLI 763 Query: 647 TQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDG 685 T G ++ +SD+ +S+ +G K+++ + Sbjct: 764 TTEGIVIRTNISDISVISRNTQGVKLMSTGENDIVASMAV 803 >UniRef50_C8WIN1 DNA gyrase, A subunit n=39 Tax=Bacteria RepID=C8WIN1_EGGLE Length = 932 Score = 820 bits (2118), Expect = 0.0, Method: Composition-based stats. Identities = 258/764 (33%), Positives = 414/764 (54%), Gaps = 39/764 (5%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 L + + ++L Y+M VI+ RALP + DGLKPV RRI+YAM+E G + KSARTVGD Sbjct: 91 LGKEMQTSFLEYAMSVIVSRALPDVRDGLKPVHRRILYAMNESGYTPNRPHMKSARTVGD 150 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 V+GKYHPHGDSA Y+ MV +AQPFS R PLVDG GN+G+ D AAMRYTESRL K + Sbjct: 151 VIGKYHPHGDSAVYDTMVRLAQPFSMRVPLVDGHGNFGSIDG-DGAAAMRYTESRLDKVA 209 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 LL +L + T D+ PN+D +L+EP +LPAR PN+L+NG+ GIAVGMAT+IPPHNL E Sbjct: 210 MELLRDLDKETVDFQPNYDESLEEPTVLPARFPNLLVNGSQGIAVGMATNIPPHNLGETI 269 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED 249 A ++D P T ++L+ + GPD+PT II + IR YE GRGS+ +RA K E+ Sbjct: 270 DATCLMLDNPDVTTEELMKALPGPDFPTGG-IIMGKKGIRDAYETGRGSLTVRAKCKVEE 328 Query: 250 G-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 G ++V++ +P+QV+ R+LE++ +R KKLP + ++ D +D ++ + + Sbjct: 329 GKNGRSSIVVTEIPYQVNRQRLLEKLGELVREKKLPEISNIHDGADRHGIDIIIDLKK-- 386 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 364 V+N L+ T L+ + + + + +DG P V +L E+L ++ + + + RR Y Sbjct: 387 DAIPQVVLNKLYKHTQLQVGFGVIM-LSLVDGAPRVLSLKEMLHYYIAHQEEVIVRRTRY 445 Query: 365 RLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQAEAILELK 421 L K +R HILEGL++A NIDEVI IIR+ E + RFGLT+ Q AILE++ Sbjct: 446 ELAKAEERAHILEGLIIALDNIDEVIHIIRSSQTDKEAAERMTERFGLTDKQTAAILEMR 505 Query: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQ 481 LR L LE KI E EL ++ + +L+ ++ +++++K+EL + +G RR+ L Sbjct: 506 LRRLTGLEHQKIEDELKELLEKIAYFKRVLSDDQLVHDIIKEELSEVKKKFGSPRRTLL- 564 Query: 482 EREEAKAMSEHDMLPSEPVTIVLSQMGWVRS--------AKGHDIDAPGLNYKAGDSFKA 533 E AK + D++ E + + +++ G+V+ K G+N K D + Sbjct: 565 -SEAAKDLDVEDLIAEESMVVTMTKAGYVKRLPVATYRQQKRGGKGMSGVNLKDNDYVEH 623 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHMLMESD- 590 ++ ++F + G+ Y + LP A +G + L L G T+ ++ D Sbjct: 624 LFVASTHSYMLFFSTKGKVYRLKVYELPEASRHARGTAIVNLLPLEKGETISAVIATKDF 683 Query: 591 --DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQ 648 D+ L+ A++ G + + R G I+L +N ++ + +L ++ Sbjct: 684 PSDEYLMFATEHGMVKKTSMDLYDRTRRDGLIAISLKDNDRLISVKRVAPGEK-VLMVSS 742 Query: 649 AGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKI 707 AG+ +M+ ++ + + G + +N + + + P + L + K Sbjct: 743 AGKAIMWDEGEVRAMGRDTMGVRGMN------VPPIAKVLGMEIAQPDTDLFVITEKGYG 796 Query: 708 KLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K P RG +G + ++ + + + + D E Sbjct: 797 KRTPIAEYP-EHHRGGQGVFTITM--TEKKGLLAVMKIVAEDDE 837 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 83/212 (39%), Gaps = 14/212 (6%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP------GLNYKAGDSFKA 533 L++ E A+ PS+ + ++ G V+ D ++ K D + Sbjct: 668 LEKGETISAVIATKDFPSDEYLMFATEHGMVKKTSMDLYDRTRRDGLIAISLKDNDRLIS 727 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLMESDD 591 + + V+ V S G++ R G G + +PP A V M + D Sbjct: 728 VKRVAPGEKVLMVSSAGKAIM---WDEGEVRAMGRDTMGVRGMNVPPIAKVLGMEIAQPD 784 Query: 592 QKLLMASDAGYGFVCTFNDLVARNRAGKAL--ITLPENAHVMPPVVIEDASDMLLAITQA 649 L + ++ GYG + +R G+ + IT+ E ++ + I D ++ +++ Sbjct: 785 TDLFVITEKGYGKRTPIAEYPEHHRGGQGVFTITMTEKKGLLAVMKIVAEDDEIMIMSEE 844 Query: 650 GRMLMFPVSDLPQLSK-GKGNKIINIPSAEAA 680 G + PVS + +L + +G ++ + Sbjct: 845 GVCVRTPVSGISELGRSTQGVCVMKTADKDRV 876 >UniRef50_D1B8A6 DNA gyrase, A subunit n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B8A6_THEAS Length = 816 Score = 819 bits (2116), Expect = 0.0, Method: Composition-based stats. Identities = 262/771 (33%), Positives = 416/771 (53%), Gaps = 37/771 (4%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + L L E +++Y++Y+M VI+ RALP DGLKPVQRRI+YAM ELGL S F Sbjct: 10 LFQKVIPLPLEEEIKHSYIDYAMSVIVGRALPDARDGLKPVQRRILYAMRELGLRHSQPF 69 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VG+ +GKYHPHGD+A YE MV M+Q FS RYPLVDGQGN+G+ D AAMRY Sbjct: 70 KKSARVVGETMGKYHPHGDAAIYETMVRMSQDFSMRYPLVDGQGNFGSIDG-DPPAAMRY 128 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RL E +L+++ + T DW+PNFD +L+EP +LP+R+PN+L+NG+TGIAVGMAT++ Sbjct: 129 TEARLHSLGEEMLADIDEDTVDWLPNFDESLEEPAVLPSRIPNLLVNGSTGIAVGMATNM 188 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNLREV A L+D P + +L+ V GPD+PT I+ R I Y GRG + Sbjct: 189 PPHNLREVVDACCTLLDNPDVEVGELMTHVPGPDFPTGGVIM-GRDGIIDAYTTGRGKIV 247 Query: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 +R + ED A+VI+ +P+ V+ + ++E I ++ +L + D+RDES+ E Sbjct: 248 VRGCAEIEDAKRGKKAIVITQIPYMVNKSNLIETIVKGVQAGQLDGITDVRDESNREGIR 307 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 ++ + R D V+ L++ T L+ ++ + +N+ +DGRP NL +L ++ RR Sbjct: 308 LVLELHR--DSDPHLVLRQLYSRTQLQTTFGV-INLALVDGRPVELNLKGLLQIFIDHRR 364 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP---KPALMSRFGLTET 412 VRRR YRL K +R HILEGL+ A ID VI +IR+ ++P K L+ G TE Sbjct: 365 MVVRRRTQYRLRKAEERAHILEGLVKALDMIDMVIALIRSSEDPLVAKGRLVEELGFTEA 424 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QA+AIL+++L+ L LE+ K++ E +EL + + + IL ++++++++EL +AY Sbjct: 425 QAQAILDMRLQRLTSLEKHKLQEELAELMAQIARYRLILGDPAELDSVVREELLEVKRAY 484 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GLN 524 GD+RR+ +++ + +S D++P V + +++ G++R D G Sbjct: 485 GDERRTVIEDSVD--DVSYEDLIPETEVVVAMTRDGFIRRMPLQDYRCQARGGKGVKGAA 542 Query: 525 YKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR-GQGEPLTGKLTLPPGATVD 583 K D +++ + GR +++ + +P + G+G+ ++ ++L G +V Sbjct: 543 VKGEDEVSLVAVTTTHRSLYLFTDRGRVFSLKCLAIPEPKSGRGKHVSTFISLDEGESVV 602 Query: 584 HM--LMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASD 641 + + + + G +L RAG+ ++ L E+ + D Sbjct: 603 TFRDSALEGARFVFLVTKMGLAKRLPVGELEGITRAGRRILGLEEDDTIARVRF-TGGED 661 Query: 642 MLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI 700 LL T G+ L ++ + KG + I + + G D + P + Sbjct: 662 QLLLTTAKGQTLRVSETEFRPQGRAAKGVRGIKLDPDDLVVGCDVIM------PGRQVLF 715 Query: 701 HVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K E V RG G R ++ +R + D E Sbjct: 716 ISQLGMGKRTRYEEFTVH-HRGGMGV--RAMRLGERTGHLVGAWGVADDDE 763 Score = 93.1 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 73/217 (33%), Gaps = 16/217 (7%) Query: 482 EREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAV 535 + E+ L ++++MG + ++ L + D+ Sbjct: 596 DEGESVVTFRDSALEGARFVFLVTKMGLAKRLPVGELEGITRAGRRILGLEEDDTIARVR 655 Query: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLMESDDQK 593 ++ + G+ + R QG G + L P V + ++ Sbjct: 656 FTGGEDQLLLTTAKGQ--TLRVSET-EFRPQGRAAKGVRGIKLDPDDLVVGCDVIMPGRQ 712 Query: 594 LLMASDAGYGFVCTFNDLVARNRAG--KALITLPENA-HVMPPVVIEDASDMLLAITQAG 650 +L S G G + + +R G + L E H++ + D D ++ IT G Sbjct: 713 VLFISQLGMGKRTRYEEFTVHHRGGMGVRAMRLGERTGHLVGAWGVAD-DDEIMVITSRG 771 Query: 651 RMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGL 686 R++ F D+ LS+ G ++ + + + Sbjct: 772 RVVRFSARDVSSLSRSAMGLTLVRLDEGDQVADVTVI 808 >UniRef50_P48354 DNA gyrase subunit A n=46 Tax=Bacteria RepID=GYRA_MYCS2 Length = 842 Score = 819 bits (2115), Expect = 0.0, Method: Composition-based stats. Identities = 246/777 (31%), Positives = 403/777 (51%), Gaps = 44/777 (5%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 D E + + + + +Y++Y+M VI+ RALP + DGLKPV RR++YAM + G K Sbjct: 14 DRIEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAK 73 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SAR+V + +G YHPHGD++ Y+ +V MAQP+S RYPLVDGQGN+G+P AAMRYTE Sbjct: 74 SARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP-GNDPPAAMRYTE 132 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +RL+ + +L E+ + T D++PN+DG +QEP +LP+R PN+L NG+ GIAVGMAT+IPP Sbjct: 133 ARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPP 192 Query: 183 HNLREVAQAAIALIDQ----PKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGS 238 HNL E+A+A ++ + T + +++ V+GPD+PT I+ I Y+ GRGS Sbjct: 193 HNLGELAEAVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIV-GTQGIEDTYKTGRGS 251 Query: 239 VRMRAVWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHEN 293 ++MR V + E+ ++VI+ LP+QV+ + IA Q+R+ KL + ++ D+S Sbjct: 252 IKMRGVVEIEEDSRGRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRV 311 Query: 294 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVF 353 R+V+ + + V V+N+L+ T L+ S+ N+ I +DG P L +++ ++ Sbjct: 312 GLRIVVELKRDAV-AKVVLNNLYKHTQLQTSFGANMLSI-VDGVPRTLRLDQLIRLYVDH 369 Query: 354 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLT 410 + D + RR YRL K +R HIL GL+ A +DEVI +IR D + L+ + Sbjct: 370 QLDVIVRRTRYRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARAGLIELLDID 429 Query: 411 ETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQ 470 + QA+AIL+++LR LA LE KI + +++E E L+ ILA + +++ EL+ Sbjct: 430 DIQAQAILDMQLRRLAALERQKIVDDLAKIEAEIADLEDILAKPERQRGIVRDELKEIVD 489 Query: 471 AYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS--------AKGHDIDAPG 522 +GD RR+ + + +S+ D++ E V + +++ G+ + K G Sbjct: 490 KHGDARRTRIVPAD--GEVSDEDLIAREDVVVTITETGYAKRTKTDLYRSQKRGGKGVQG 547 Query: 523 LNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGA 580 K D ++ ++F + GR Y LP A +G+ + L P Sbjct: 548 AGLKQDDMVNHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVANLLAFQPEE 607 Query: 581 TVDHML---MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIE 637 + ++ D L++A+ G +D + G I L E ++ V+ Sbjct: 608 RIAQVIQIKSYEDAPYLVLATRNGLVKKSKLSDFDSNRSGGIVAINLREGDELVGAVLCS 667 Query: 638 DASDMLLAITQAGRMLMFPVSD--LPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVLPP 694 D LL ++ G+ + F +D L + + G + + +D L L V+ P Sbjct: 668 AEDD-LLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNE------DDRLLSLNVVRP 720 Query: 695 QSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 + L + K + V G RG +G L R + D+E Sbjct: 721 DTYLLVATSGGYAKRTSIDEYSVQG-RGGKGILTIQYDR--KRGSLVGALIVDDDTE 774 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 85/214 (39%), Gaps = 14/214 (6%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP------GLNYKAGDSFKA 533 Q E + + P ++ ++ G V+ +K D D+ +N + GD Sbjct: 603 FQPEERIAQVIQIKSYEDAPYLVLATRNGLVKKSKLSDFDSNRSGGIVAINLREGDELVG 662 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLMESDD 591 AV + ++ V + G+S + R G +G + + + + D Sbjct: 663 AVLCSAEDDLLLVSANGQSIRFSATD-EALRPMGRATSGVQGMRFNEDDRLLSLNVVRPD 721 Query: 592 QKLLMASDAGYGFVCTFNDLVARNRAGKALITL---PENAHVMPPVVIEDASDMLLAITQ 648 LL+A+ GY + ++ + R GK ++T+ + ++ +++ D L AIT Sbjct: 722 TYLLVATSGGYAKRTSIDEYSVQGRGGKGILTIQYDRKRGSLVGALIV-DDDTELYAITS 780 Query: 649 AGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAAR 681 G ++ + + + KG +++N+ + Sbjct: 781 TGGVIRTAARQVRKAGRQTKGVRLMNLAEGDTLI 814 >UniRef50_Q8DPM2 DNA gyrase subunit A n=213 Tax=Bacteria RepID=GYRA_STRR6 Length = 822 Score = 819 bits (2115), Expect = 0.0, Method: Composition-based stats. Identities = 246/768 (32%), Positives = 404/768 (52%), Gaps = 39/768 (5%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 + L + + ++++Y+M VI+ RALP + DGLKPV RRI+Y M+ELG+ KKSAR Sbjct: 8 NVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKKSARI 67 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 GDV+GKYHPHGDS+ YEAMV MAQ +SYRY LVDG GN+G+ D S AA RYTE+R+S Sbjct: 68 TGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDG-DSAAAQRYTEARMS 126 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 K + +L ++ + T D+V N+D +EP +LPAR PN+L+NG TGIAVGMAT+IPPHNL Sbjct: 127 KIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPPHNLG 186 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 E A ++D P+ T L++++ GPD+PT A ++ ++ I K YE G+GS+ +R+ + Sbjct: 187 ETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGA-LVMGKSGIHKAYETGKGSIVLRSRTE 245 Query: 247 KE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 E +V++ P+ V+ +V E I ++ K++ + +RDES+ E ++ V Sbjct: 246 IETTKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVIEVK 305 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 R + ++N+LF T ++ ++ N+ I +G P + +L +IL ++ +++ V RR Sbjct: 306 R--DASANVILNNLFKMTQMQTNFGFNMLAI-QNGIPKILSLRQILDAYIEHQKEVVVRR 362 Query: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQAEAIL 418 + EK R HILEGLL+A +IDEVI IIR + E + LMS+F L+E Q++AIL Sbjct: 363 TRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSKFKLSERQSQAIL 422 Query: 419 ELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRS 478 +++LR L LE KI+ E +L L ILA +++ ++K EL + + D RR+ Sbjct: 423 DMRLRRLTGLERDKIQSEYDDLLALIADLADILAKPERVSQIIKDELDEVKRKFSDKRRT 482 Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS--------AKGHDIDAPGLNYKAGDS 530 L + ++ + D++ V I LS G+++ K G K D Sbjct: 483 ELM-VGQVLSLEDEDLIEESDVLITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDF 541 Query: 531 FKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS--ARGQGEPLTGKLTLPPGATVDHMLME 588 + V ++ ++F + GR Y + +P +G P+ L L ++ ++ Sbjct: 542 VRELVSTSTHDHLLFFTNKGRVYRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINV 601 Query: 589 S----DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLL 644 DD L + G + + + G + L + ++ ++ + ++ Sbjct: 602 ESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINV-LLAEGDMDII 660 Query: 645 AITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVG 703 T+ G + F S + +S+ G K +N+ + G + Q + I Sbjct: 661 IGTKFGYAVRFNQSAVRGMSRIATGVKGVNLREGDTVVGASLITD------QDEVLIITE 714 Query: 704 KRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K K +GR G M+ + ++ + + GD + Sbjct: 715 KGYGKRTVATEYP---TKGRGGKGMQTAKITEKNGLLAGLMTVQGDED 759 Score = 83.0 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 76/218 (34%), Gaps = 14/218 (6%) Query: 481 QEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAA 534 ++ ++ + ++ G V+ + LN K D Sbjct: 591 EDESIQTVINVESDRSDDAYLFFTTRHGIVKRTSVKEFANIRQNGLKALNLKDEDELINV 650 Query: 535 VKGKSNQPVVFVDSTGRSYAID--PITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQ 592 + + + ++ G + + + S G + L G TV + +D Sbjct: 651 LLAEGDMDIIIGTKFGYAVRFNQSAVRGMSRIATG---VKGVNLREGDTVVGASLITDQD 707 Query: 593 KLLMASDAGYGFVCTFNDLVARNRAGKAL--ITLPENAHVMPPVVIEDASDMLLAITQAG 650 ++L+ ++ GYG + + R GK + + E ++ ++ + L+ IT G Sbjct: 708 EVLIITEKGYGKRTVATEYPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTG 767 Query: 651 RMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLA 687 M+ ++++ Q + G K++ + +A Sbjct: 768 VMIRTNLANISQTGRATMGVKVMRLDQDAQIVTFTTVA 805 >UniRef50_B8CZP0 DNA gyrase, A subunit n=5 Tax=Bacteria RepID=B8CZP0_HALOH Length = 816 Score = 818 bits (2114), Expect = 0.0, Method: Composition-based stats. Identities = 254/772 (32%), Positives = 421/772 (54%), Gaps = 40/772 (5%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 + + + + AYL+Y+M VI+ RALP + DGLKPVQRRI+YA+ +LG+ + K Sbjct: 7 NGKVLEVDIENEMKGAYLDYAMSVIVSRALPDVRDGLKPVQRRILYALHDLGITPNKPHK 66 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VG+VLGKYHPHGD+A Y+ MV MAQ FS+RYPLVDG GN+G+ D S AAMRYT Sbjct: 67 KSARVVGEVLGKYHPHGDTAVYDTMVRMAQEFSFRYPLVDGHGNFGSIDG-DSAAAMRYT 125 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E R+++ + LL ++ + T D+ PNFD +L+EP++LPARLPN+L+NG +GIAVGM+T+IP Sbjct: 126 EVRMARLTTELLRDIDKNTVDFAPNFDESLEEPEVLPARLPNLLMNGVSGIAVGMSTNIP 185 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNL EV +ALID P + L+ I++GPD+PT II + +I + Y+ GRG +++ Sbjct: 186 PHNLGEVIDGVVALIDNPDLEVKDLMKIIKGPDFPTGG-IIMGKDKIYQAYKTGRGRLKV 244 Query: 242 RAVWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 R + E+ ++I+ +P+QV+ AR++E+IA +R++K+ + DLRDESD Sbjct: 245 RGKARIEEDKNGKSKIIITEIPYQVNKARLVEKIANLVRDEKITGISDLRDESDRRGLRI 304 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 ++ + + ++N L+ T L+ +Y + + + +DG P V L E+L+ +L +++ Sbjct: 305 VIELKKGTV--PKVILNRLYKYTQLQVTYGVIM-LALVDGMPRVLTLKELLNHYLEHQKE 361 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQ 413 V RR Y+L+K R HILEGL +A NID+++++IR D + L+ F LTE Q Sbjct: 362 VVTRRTKYQLDKAEARAHILEGLRIALANIDDIVQLIREAPDVDTARRGLIENFNLTEKQ 421 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 AEAIL ++L+ L LE KI E EL+++ + ILA E K+ ++K EL + + Sbjct: 422 AEAILRMRLQRLTGLERDKIEAEYKELKEKIAYYRSILADEGKLLGIIKDELLELKEKFQ 481 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GLNY 525 D+RR+ + +A + D++P E V I L+ G+++ + G+N Sbjct: 482 DERRTEI--SIQAVDLDVEDLIPEEQVVITLTHHGYIKRMPIDIYRSQRRGGKGIIGINT 539 Query: 526 KAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVD 583 K D + ++ +F + G+ Y + +P S + +G + L L + Sbjct: 540 KEEDFVEHVFTTSTHHYFLFFTNKGKVYRLRVFEIPQASRQARGTAIVNLLELEEEERIT 599 Query: 584 HMLM---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDAS 640 ++ +++ L+M + G + G +TL + ++ D + Sbjct: 600 TVIPIREFDEERYLVMVTRNGMIKKTPLAEYE-SRYTGLIGLTLRDEDELIDV-KYTDGN 657 Query: 641 DMLLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLT 699 ++ +T G+ + F +++ + + G K I + D + + V L Sbjct: 658 QSVIIVTHRGKAIHFKENEVRSMGRTAMGVKAITLEDG------DYVVGMGVDSEGDDLL 711 Query: 700 IHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 + K K P E ++ RG +G + ++ + + D + Sbjct: 712 VITEKGYGKRTPLEEYRLQ-SRGGKG--LITANITEKNGNLAGVKVVREDHD 760 Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 76/201 (37%), Gaps = 13/201 (6%) Query: 497 SEPVTIVLSQMGWVRSAKGHDI-----DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGR 551 E +++++ G ++ + GL + D NQ V+ V G+ Sbjct: 609 EERYLVMVTRNGMIKKTPLAEYESRYTGLIGLTLRDEDELIDVKYTDGNQSVIIVTHRGK 668 Query: 552 SYAIDPITLPS--ARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFN 609 + + S G +TL G V M ++S+ LL+ ++ GYG Sbjct: 669 AIHFKENEVRSMGRTAMG---VKAITLEDGDYVVGMGVDSEGDDLLVITEKGYGKRTPLE 725 Query: 610 DLVARNRAGKALI--TLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGK 667 + ++R GK LI + E + V + L+ IT G ++ V + +L + Sbjct: 726 EYRLQSRGGKGLITANITEKNGNLAGVKVVREDHDLILITSEGIIIRTRVEGISRLGRNT 785 Query: 668 -GNKIINIPSAEAARGEDGLA 687 G K+I + + ++ Sbjct: 786 LGVKVIRLEEGDRVVSLARIS 806 Score = 62.6 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 46/171 (26%), Gaps = 14/171 (8%) Query: 485 EAKAMSEHDMLPSEPVTIVLSQMGW--------VRSAKGHDIDAPGLNYKAGDSFKAAVK 536 + + + I+++ G VRS + + + GD Sbjct: 644 DEDELIDVKYTDGNQSVIIVTHRGKAIHFKENEVRSMGRTAMGVKAITLEDGDYVVGMGV 703 Query: 537 GKSNQPVVFVDSTGRSYAIDP--ITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKL 594 ++ + G L S G+G + + + +D L Sbjct: 704 DSEGDDLLVITEKGYGKRTPLEEYRLQSRGGKGLITANI--TEKNGNLAGVKVVREDHDL 761 Query: 595 LMASDAGYGFVCTFNDLVARNRA--GKALITLPENAHVMPPVVIEDASDML 643 ++ + G + R G +I L E V+ I + Sbjct: 762 ILITSEGIIIRTRVEGISRLGRNTLGVKVIRLEEGDRVVSLARISPEEKDI 812 >UniRef50_Q1IH79 DNA gyrase subunit A n=5 Tax=Bacteria RepID=Q1IH79_ACIBL Length = 865 Score = 809 bits (2091), Expect = 0.0, Method: Composition-based stats. Identities = 249/796 (31%), Positives = 421/796 (52%), Gaps = 59/796 (7%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + + + E + +YL+YSM VI+ RALP + DGLKPV RRI+YAM ++GL + K K Sbjct: 22 NIQPINIEEEMKRSYLDYSMSVIIGRALPDVRDGLKPVHRRILYAMHDMGLLHNRKHVKC 81 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 A+ VG+VLGKYHPHGDSA Y+AMV MAQ FS RYPLVDGQGN+G+ D AA RYTE+ Sbjct: 82 AKVVGEVLGKYHPHGDSAVYDAMVRMAQDFSLRYPLVDGQGNFGSVDG-DPPAAYRYTEA 140 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 R++ +E LL+++ + T D+V NFD T EP +LP ++PN+L+NG+ GIAVGMAT+IPPH Sbjct: 141 RMTAIAEELLADIDKDTVDFVANFDDTSAEPLLLPTKVPNLLINGSNGIAVGMATNIPPH 200 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL E+ A I +++ PK+TLD +L VQGPD+PT I + I+ Y+NGRG MRA Sbjct: 201 NLTEIVDACITIVNNPKSTLDDVLKFVQGPDFPTGGFI-HGKGGIKNAYQNGRGRFMMRA 259 Query: 244 VWKKE----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 E A+V++ +P+QV+ + ++++IA + +K + + D+RDESD + ++ Sbjct: 260 KVAVEHLPNKDAIVVTEIPYQVNKSTLIKKIADLVNDKTIDEISDVRDESDRDGMRIVIE 319 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 + R + V+N L+ T +++S+ + + ++ +P L++ L+ ++ R D VR Sbjct: 320 LKR--SAQPEIVLNQLYKHTQMQESFSMIFLAV-VNNQPKEMGLVQALNHFIDHRIDVVR 376 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRF--------- 407 RR Y L+K R HILEG L+A ++D VI IIR N + + L++ F Sbjct: 377 RRTFYLLQKAKDREHILEGYLMALDHLDNVIAIIRGSSNRADARENLVAYFTGKKITINT 436 Query: 408 -----------GLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERK 456 + QA+AILEL+L L +L +I E ++ + + + ILASE+K Sbjct: 437 TGKAPKVDPEKPFSTRQADAILELQLHRLTRLSIDEITSELKDVRERIAEYESILASEKK 496 Query: 457 MNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGH 516 + +++ KEL+ + YGD+RR+ +Q+ EA +S D++ E V + +S G+++ Sbjct: 497 LRSVIVKELEQIRKDYGDERRTIIQD--EAAELSLEDLIADEQVAVTVSHSGYLKRTPIS 554 Query: 517 DIDAP--------GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS--ARGQ 566 G++ + D + ++ ++ +TGR Y + +P A G+ Sbjct: 555 TYRQQRRGGTGRKGMSTRDEDFVEMMFVASTHAYLLIFTNTGRVYWLKVYEVPEIAAAGK 614 Query: 567 GEPLTGKLTLPPGATVDHMLMES----DDQKLLMASDAGYGFVCTFNDLVARNRAGKALI 622 G+ + + L PG +V +L + + + + G D G I Sbjct: 615 GKHIGNLVALQPGESVRAILPVKSLEEESRYVFFTTRKGTVKKTALVDFSNVMARGIIAI 674 Query: 623 TLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAAR 681 + ++ ++ + D++ ++ + G + F +D+ + + G + ++I + + Sbjct: 675 GIDKDDELVAAQL-TDSNQIVFLASHEGLAIRFDEADVRIMGRPAYGVRGMDIGAKDYIV 733 Query: 682 G------EDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRID 735 G E + + + K + ++ RG +G + ++ + Sbjct: 734 GMAITPKERKKGKNGGADTANLILSVTENGYGKRTDVDEYRLQT-RGGKGVI--NVKTTE 790 Query: 736 RVEIDSPRRASSGDSE 751 R + D+E Sbjct: 791 RNGKVVAIMLVTEDAE 806 Score = 79.2 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 39/245 (15%), Positives = 83/245 (33%), Gaps = 29/245 (11%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLS-QMGWVRSAKGHDI------DAPGLNYKAGDSFK 532 LQ E +A+ L E + + + G V+ D + D Sbjct: 624 LQPGESVRAILPVKSLEEESRYVFFTTRKGTVKKTALVDFSNVMARGIIAIGIDKDDELV 683 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPL--TGKLTLPPGATVDHMLMESD 590 AA SNQ V G + D + R G P + + + M + Sbjct: 684 AAQLTDSNQIVFLASHEGLAIRFDEADV---RIMGRPAYGVRGMDIGAKDYIVGMAITPK 740 Query: 591 DQK------------LLMASDAGYGFVCTFNDLVARNRAGKALITLPE---NAHVMPPVV 635 ++K +L ++ GYG ++ + R GK +I + N V+ ++ Sbjct: 741 ERKKGKNGGADTANLILSVTENGYGKRTDVDEYRLQTRGGKGVINVKTTERNGKVVAIML 800 Query: 636 IEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPP 694 + + I+Q G+++ + + + +G +++++ + + Sbjct: 801 VT-EDAEAMVISQYGKIIRTSTDSIREAGRSTQGVRLLHLEPGDKVAAAVVIPDDEKAEA 859 Query: 695 QSTLT 699 + TL Sbjct: 860 EPTLL 864 >UniRef50_Q9HUK1 DNA topoisomerase 4 subunit A n=318 Tax=Proteobacteria RepID=PARC_PSEAE Length = 754 Score = 808 bits (2088), Expect = 0.0, Method: Composition-based stats. Identities = 507/744 (68%), Positives = 612/744 (82%), Gaps = 2/744 (0%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + ER +L EFTE AYLNYSMYVIMDRALP IGDGLKPVQRRIVYAMSELGL+A +K KK Sbjct: 10 EGVERRSLAEFTEQAYLNYSMYVIMDRALPHIGDGLKPVQRRIVYAMSELGLDADSKHKK 69 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SARTVGDVLGK+HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE Sbjct: 70 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 129 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +RLS+YSE+LLSELGQGT DWVPNFDGTL EP +LPARLPN+LLNGTTGIAVGMATD+PP Sbjct: 130 ARLSRYSEVLLSELGQGTVDWVPNFDGTLDEPAVLPARLPNLLLNGTTGIAVGMATDVPP 189 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HNLREVA A + L+DQP T+ +L + V GPD+PTEAEIIT RA+++K+YE GRGSVRMR Sbjct: 190 HNLREVASACVRLLDQPGATVAELCEHVPGPDFPTEAEIITPRADLQKVYETGRGSVRMR 249 Query: 243 AVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 AV++ EDG +VI ALPHQVSG++VLEQIA QM+ KKLPMV DLRDESDHENPTR+VI+PR Sbjct: 250 AVYRVEDGDIVIHALPHQVSGSKVLEQIAGQMQAKKLPMVADLRDESDHENPTRIVIIPR 309 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRL 362 SNRVD++++M HLFATTDLE SYR+NLN+IGLDG+P VK+L ++LSEWL FR TVRRRL Sbjct: 310 SNRVDVEELMTHLFATTDLETSYRVNLNIIGLDGKPQVKDLRQLLSEWLQFRIGTVRRRL 369 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKL 422 +RL+KV +RLH+L+GLL+AFLN+DEVI IIR ED+PK LM RF L+E QA+ IL+ +L Sbjct: 370 QFRLDKVERRLHLLDGLLIAFLNLDEVIHIIRTEDQPKAVLMERFELSEVQADYILDTRL 429 Query: 423 RHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQE 482 R LA+LEEMKIRGEQ EL KE+ +LQ +L SE K+ L+++EL DA+ YGDDRRSP+ Sbjct: 430 RQLARLEEMKIRGEQEELLKEQKRLQTLLGSEAKLKKLVREELIKDAETYGDDRRSPIVA 489 Query: 483 REEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQP 542 R EA+A+SE +++P+EPVT+VLS+ GWVR AKGHDIDA GL+YKAGD FKAA G+SNQ Sbjct: 490 RAEARALSETELMPTEPVTVVLSEKGWVRCAKGHDIDAAGLSYKAGDGFKAAAPGRSNQY 549 Query: 543 VVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGY 602 VF+DSTGRSY++ +LPSARGQGEPL+G+LT PPGA+ + +L+ DD ++ASDAGY Sbjct: 550 AVFIDSTGRSYSLPAHSLPSARGQGEPLSGRLTPPPGASFECVLLPDDDALFVIASDAGY 609 Query: 603 GFVCTFNDLVARNRAGKALITLPENAHVMPPVVIED-ASDMLLAITQAGRMLMFPVSDLP 661 GFV DL A+N+AGKAL++LP + V+ P + D D L A+T GR+L+F VSDLP Sbjct: 610 GFVVKGEDLQAKNKAGKALLSLPNGSAVVAPRPVRDVEQDWLAAVTTEGRLLLFKVSDLP 669 Query: 662 QLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGER 721 QL KGKGNKII IP A E+ L L VLP +TL + GKR + L+ ++L+ GER Sbjct: 670 QLGKGKGNKIIGIPGERVASREEYLTDLAVLPAGATLVLQAGKRTLSLKGDDLEHYKGER 729 Query: 722 GRRG-TLMRGLQRIDRVEIDSPRR 744 GRRG L RG QR+D + +D P + Sbjct: 730 GRRGNKLPRGFQRVDSLLVDIPPQ 753 >UniRef50_Q2IHQ4 DNA gyrase subunit A n=15 Tax=cellular organisms RepID=Q2IHQ4_ANADE Length = 907 Score = 804 bits (2076), Expect = 0.0, Method: Composition-based stats. Identities = 252/795 (31%), Positives = 404/795 (50%), Gaps = 61/795 (7%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 ++ + + +YL+YSM VI+ RALP + DGLKPV RR++YAM GL+ + ++ K A Sbjct: 27 QVNIEQEMRKSYLDYSMSVIIGRALPDVRDGLKPVHRRVLYAMHTEGLHYNKRYSKCAGV 86 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VG+VL KYHPHGD++ Y+A+V +AQ ++ RYPL+DGQGN+G+ D AA RYTE RL Sbjct: 87 VGEVLKKYHPHGDASVYDALVRLAQDWNLRYPLIDGQGNFGSVDG-DPAAAYRYTECRLE 145 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 + S+ LL+++ + T DW PNFD ++ EP++LP R PN+L+NG+ GIAVGMAT+IPPHN+ Sbjct: 146 RLSDHLLADIDKDTVDWGPNFDESILEPRVLPTRFPNLLVNGSAGIAVGMATNIPPHNMG 205 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW- 245 EV AA+ LI+ PK T+ L+ + GPD+PT II R IR YE GRG++++RA Sbjct: 206 EVIDAAVHLIENPKATVLDLMRFIPGPDFPTAG-IIRGRDGIRAAYEKGRGTIQVRARTV 264 Query: 246 -----KKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 K E +V++ +P+QV+ A+++E IA +R K++ + DLRDES E ++ + Sbjct: 265 VEIHPKTERETIVVTEIPYQVNKAKLVEHIAELVREKRIEGISDLRDESSREGMRIVIEL 324 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360 R V+N+L+A T ++ + + + I G+P V L E+L ++ RRD V R Sbjct: 325 KR--DALAQVVLNNLYAHTQMQMGFGVIMLAID-GGQPRVLTLKEMLERFVAHRRDVVTR 381 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAEAI 417 R Y L K +R HIL G +A +IDE+IE+I+ + + +M+RF L+E QA+AI Sbjct: 382 RTRYELRKAREREHILLGYQIALDHIDEIIELIKKAKDRDAARDEMMARFALSELQAKAI 441 Query: 418 LELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRR 477 LE++L+ L LE KI E +E++K +L+ ILASE+ + L+ EL+ Q + D+RR Sbjct: 442 LEMQLQRLTGLERQKILDELAEVQKLITRLKEILASEKVLMELIVGELREVKQLFADERR 501 Query: 478 SPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS--------AKGHDIDAPGLNYKAGD 529 + +Q EA +S D++ E + + +S +G+V+ K G + D Sbjct: 502 TEIQ--GEATDLSTEDLIAEEEMVVTVSHLGYVKRNPVSLYRAQKRGGRGKTGAATRDED 559 Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHMLM 587 ++ ++ ++ G+ Y + +P +G+P+ + L PG V +L Sbjct: 560 FLESLFVASTHSYLLVFSDKGKVYWLKVHEIPPAGRTAKGKPIVNLVQLAPGEKVAAILP 619 Query: 588 ES------------------------------DDQKLLMASDAGYGFVCTFNDLVARNRA 617 + M + G A Sbjct: 620 VRRLPEPAGAAEETPEAEGAEAEKAEEATAEGPPAFVFMVTRKGLIKKTRLEQFARPRAA 679 Query: 618 GKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPS 676 G + + E ++ + D +L T G + F SD+ + + G K I + Sbjct: 680 GIIGLGIEEGDELITARL-TDGGGHILLSTARGMAIRFEESDVRPMGRTAYGVKGITLEE 738 Query: 677 AEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDR 736 + + T+ K +V RG +G + ++ +R Sbjct: 739 GDEVVAGAAIPAAAEGEQAHTVLTVTANGYGKRTELAEYRVQT-RGGKG--LITIKTTER 795 Query: 737 VEIDSPRRASSGDSE 751 E Sbjct: 796 NGPVVAAAPVGDAEE 810 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 72/217 (33%), Gaps = 21/217 (9%) Query: 500 VTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSY 553 ++++ G ++ + GL + GD A ++ + G + Sbjct: 655 FVFMVTRKGLIKKTRLEQFARPRAAGIIGLGIEEGDELITARLTDGGGHILLSTARGMAI 714 Query: 554 AIDPITL--PSARGQGEPLTGKLTLPPGATVDHMLMES------DDQKLLMASDAGYGFV 605 + + G +TL G V +L + GYG Sbjct: 715 RFEESDVRPMGRTAYG---VKGITLEEGDEVVAGAAIPAAAEGEQAHTVLTVTANGYGKR 771 Query: 606 CTFNDLVARNRAGKALITLP--ENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQL 663 + + R GK LIT+ E + ++ ++ IT AG ++ P + + Sbjct: 772 TELAEYRVQTRGGKGLITIKTTERNGPVVAAAPVGDAEEVMLITNAGMLIRMPARGISVI 831 Query: 664 SK-GKGNKIINIP-SAEAARGEDGLAQLYVLPPQSTL 698 + +G ++I + E G +A+ ++ + Sbjct: 832 GRNTQGVRLITLESKEEQVVGVARVAETTPEAEEAGV 868 >UniRef50_P41513 DNA gyrase subunit A n=98 Tax=Bacteria RepID=GYRA_ERWCA Length = 878 Score = 803 bits (2074), Expect = 0.0, Method: Composition-based stats. Identities = 267/808 (33%), Positives = 426/808 (52%), Gaps = 76/808 (9%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 ++ + + E +++YL+Y+M VI+ RALP + DGLKPV RR++YAMS LG + + + Sbjct: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWNKPY 63 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VGDV+GKYHPHGDSA YE +V MAQPFS RY LVDGQGN+G+ D S AAMRY Sbjct: 64 KKSARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAAMRY 122 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE R+SK + LL++L + T D+VPN+DGT Q P ++P R+PN+L+NG++GIAVGMAT+I Sbjct: 123 TEIRMSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMATNI 182 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL EV +A ID +L+ L++ ++GPD+PT A II R I + Y GRG + Sbjct: 183 PPHNLTEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAA-IINGRRGIEEAYRTGRGKIY 241 Query: 241 MRAVWKKE------DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENP 294 +RA + E +++ +P+QV+ AR++E+IA +++K++ + LRDESD + Sbjct: 242 IRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDG- 300 Query: 295 TRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFR 354 R+VI + + V + V+N+L++ T L+ S+ IN+ + G+P + L +IL ++ R Sbjct: 301 MRIVIEIKRDAVG-EVVLNNLYSQTQLQTSFGINM-VALHQGQPKIMPLKDILVAFVRHR 358 Query: 355 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMS------ 405 R+ V RR + L K R HILEGL +A NID +IE+IR E K +L++ Sbjct: 359 REVVTRRTIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELG 418 Query: 406 ----------------------------RFGLTETQAEAILELKLRHLAKLEEMKIRGEQ 437 R+ LTE QA+AIL+L+L+ L +E K+ E Sbjct: 419 SVATMLERAGDDAARPEWLEPEFGIRDGRYYLTEQQAQAILDLRLQKLTGMEHEKLLDEY 478 Query: 438 SELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPS 497 EL E +L IL S ++ ++++EL+A Y D+RR+ + ++ D++ Sbjct: 479 KELLAEIAELLYILNSPERLMEVIREELEAFKTQYSDERRTEIT--ANTADINIEDLINQ 536 Query: 498 EPVTIVLSQMGWVRSAKGHDIDAP--------GLNYKAGDSFKAAVKGKSNQPVVFVDST 549 E V + LS G+V+ D +A K D + ++ ++ S Sbjct: 537 EDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSSR 596 Query: 550 GRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHMLM---ESDDQKLLMASDAGYGF 604 GR Y + LP A +G P+ L L + +L + + + MA+ +G Sbjct: 597 GRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPVREYEEGRHIFMATASGTVK 656 Query: 605 VCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS 664 + +R+ +G + L E ++ + D SD + + G+++ F + + Sbjct: 657 KTALTEF-SRHVSGIIAVNLNEGDELIGVDL-TDGSDEAMLFSAEGKVVRFSEQAVRSMG 714 Query: 665 KGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGR 723 + G + IN+ +GED + L + + + K T R Sbjct: 715 RTATGVRGINL------QGEDRVVSLIIPRGEGDILTVTQNGFGKRTAVSEYP-TKSRAT 767 Query: 724 RGTLMRGLQRIDRVEIDS-PRRASSGDS 750 +G + ++ +R + + D Sbjct: 768 KGVI--SIKVSERNGKVVGAVQVDAADQ 793 Score = 86.1 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 83/242 (34%), Gaps = 24/242 (9%) Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI-----DAPGLNYKA 527 D+R + + E + + + G V+ + +N Sbjct: 627 ADERITAILPVREYEEGRH---------IFMATASGTVKKTALTEFSRHVSGIIAVNLNE 677 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHM 585 GD + + + G+ + R G TG + L V + Sbjct: 678 GDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAV---RSMGRTATGVRGINLQGEDRVVSL 734 Query: 586 LMESDDQKLLMASDAGYGFVCTFNDLVARNR--AGKALITLPE-NAHVMPPVVIEDASDM 642 ++ + +L + G+G ++ ++R G I + E N V+ V + DA+D Sbjct: 735 IIPRGEGDILTVTQNGFGKRTAVSEYPTKSRATKGVISIKVSERNGKVVGAVQV-DAADQ 793 Query: 643 LLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 ++ IT AG ++ VS++ + + +G +I E G +A+ + Sbjct: 794 IMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAEDEHVVGLQRVAEPVEDEELDGVVKV 853 Query: 702 VG 703 G Sbjct: 854 EG 855 >UniRef50_P48372 DNA gyrase subunit A n=78 Tax=Bacteria RepID=GYRA_PSEAE Length = 923 Score = 801 bits (2070), Expect = 0.0, Method: Composition-based stats. Identities = 262/852 (30%), Positives = 413/852 (48%), Gaps = 118/852 (13%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 ++ + + + + +YL+Y+M VI+ RALP DGLKPV RR++YAMSELG + + + Sbjct: 4 LAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWNKPY 63 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VGDV+GKYHPHGD+A Y+ +V MAQPFS RY LVDGQGN+G+ D + AAMRY Sbjct: 64 KKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDG-DNAAAMRY 122 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE R++K + LL++L + T DWVPN+DGT Q P ++P ++PN+L+NG++GIAVGMAT+I Sbjct: 123 TEVRMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMATNI 182 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL EV +AL+D P T+D+L+ + GPD+PT II RA I + Y GRG + Sbjct: 183 PPHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAG-IINGRAGIIEAYRTGRGRIY 241 Query: 241 MRAVWKKED-------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHEN 293 +RA E+ ++I+ LP+Q++ AR++E+IA ++ KK+ + +LRDESD + Sbjct: 242 IRARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKDG 301 Query: 294 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVF 353 R+VI R V + V+N+L+A T L+ + IN + +DG+P NL ++L ++ Sbjct: 302 -MRVVIELRRGEVG-EVVLNNLYAQTQLQSVFGIN-VVALVDGQPRTLNLKDMLEVFVRH 358 Query: 354 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMS----- 405 RR+ V RR Y L K +R HILEG VA NID VIE+I++ E K L++ Sbjct: 359 RREVVTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWES 418 Query: 406 -----------------------------RFGLTETQAEAILELKLRHLAKLEEMKIRGE 436 ++ L+ QA+AILEL+L L LE K+ E Sbjct: 419 SAVEAMVERAGADACRPEDLDPQYGLRDGKYYLSPEQAQAILELRLHRLTGLEHEKLLSE 478 Query: 437 QSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLP 496 E+ +L IL + ++ ++++EL+A +GD RR+ + ++ D++ Sbjct: 479 YQEILNLIGELIRILTNPARLMEVIREELEAVKAEFGDARRTEIVAS--QVDLTIADLIT 536 Query: 497 SEPVTIVLSQMGWVRSAK--------GHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDS 548 E + +S G+ +S K D + + S+ ++ S Sbjct: 537 EEDRVVTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFSS 596 Query: 549 TGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHML-------------------- 586 G+ Y + +P A +G PL L L G + ML Sbjct: 597 KGKVYWLRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDEA 656 Query: 587 --------------------------MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKA 620 E + MA+ G +G Sbjct: 657 EGAVLEGEVVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGLI 716 Query: 621 LITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEA 679 + L E ++ I D + ++ + AG+++ F S + + + +G + + + + Sbjct: 717 ALKLEEGDTLI-AAAITDGAKEVMLFSSAGKVIRFAESVVRIMGRNARGVRGMRLGKGQQ 775 Query: 680 ARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEI 739 L + + + + + K P RGR G + + +R Sbjct: 776 ------LISMLIPESGAQILTASERGFGKRTPLSKFP---RRGRGGQGVIAMVTNERNGA 826 Query: 740 DSPRRASSGDSE 751 E Sbjct: 827 LIAAVQVQEGEE 838 Score = 90.0 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 77/208 (37%), Gaps = 16/208 (7%) Query: 501 TIVLSQMGWVRSAK------GHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYA 554 + + G V+ L + GD+ AA + V+ S G+ Sbjct: 690 IFMATAFGTVKKTPLVQFSRPRSSGLIALKLEEGDTLIAAAITDGAKEVMLFSSAGKVIR 749 Query: 555 I--DPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLV 612 + + +G + L G + ML+ ++L AS+ G+G + Sbjct: 750 FAESVVRIMGRNARG---VRGMRLGKGQQLISMLIPESGAQILTASERGFGKRTPLSKFP 806 Query: 613 ARNRAGKALITLPENAH---VMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKG 668 R R G+ +I + N ++ V +++ + ++ I+ G ++ V ++ + +G Sbjct: 807 RRGRGGQGVIAMVTNERNGALIAAVQVQEG-EEIMLISDQGTLVRTRVDEVSLSGRNTQG 865 Query: 669 NKIINIPSAEAARGEDGLAQLYVLPPQS 696 +I + S E G + + + + Sbjct: 866 VTLIKLASDEVLVGLERVQEPSGGDDED 893 >UniRef50_C6XXU9 DNA gyrase, A subunit n=14 Tax=Bacteria RepID=C6XXU9_PEDHD Length = 869 Score = 801 bits (2068), Expect = 0.0, Method: Composition-based stats. Identities = 247/776 (31%), Positives = 419/776 (53%), Gaps = 41/776 (5%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 +D R+ + E +AY++YSM VI+ RALP + DGLKPV RR++Y M +LGL + +K Sbjct: 10 NDKIIRIDIDEQMRSAYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMLDLGLANNKPYK 69 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VG+VLGKYHPHGD++ Y MV MAQ +S RY +V+GQGN+G+ D S AAMRYT Sbjct: 70 KSARIVGEVLGKYHPHGDASVYNTMVRMAQEWSLRYLMVEGQGNYGSIDG-DSPAAMRYT 128 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+R K +E +L+++ + T D+ NFD +LQEP +LP+++PN+L+NG++GIAVGMAT++P Sbjct: 129 EARFQKIAEDMLADINKDTVDFQLNFDDSLQEPTVLPSKVPNLLINGSSGIAVGMATNMP 188 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHN+ E A IA ID + T+ +L+ ++ PD+PT A II +++ +E GRG + M Sbjct: 189 PHNITETINATIAYIDNNEITIAELMKFIKAPDFPTGA-IIYGYTGVQEAFETGRGRIVM 247 Query: 242 RAVWKKE----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 RA + E ++++ +P+QV+ A+++E+ A + KKL + +++DES+ + + Sbjct: 248 RAKAEIEAAKDREVIIVTEIPYQVNKAQMIERTAELVGEKKLEGISNIKDESNKDGIRIV 307 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 + R + V+N+LF T L+ S+ +N N+ + GRP + NL +++ ++ R + Sbjct: 308 YEIKR--DANASIVLNNLFKQTALQTSFSVN-NIALVKGRPQLLNLRDLIHYFVEHRHEV 364 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQA 414 V RR + L + KR HILEGLL+A ++DEVI++IR+ D + + LM +FGL++ QA Sbjct: 365 VVRRTKFELAEAKKRAHILEGLLIALDHLDEVIKLIRSSDTPEDARTGLMEKFGLSDIQA 424 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 AIL++ LR L LE KI+ E +EL K + LQ IL E K ++K EL + YGD Sbjct: 425 RAILDMTLRRLTGLERDKIKDEYNELMKTIEYLQSILDDESKRMQIIKDELTEMKEKYGD 484 Query: 475 DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNY--------K 526 +RR+ + E MS D + E V I +S G+++ + G + Sbjct: 485 ERRTTIVHSAE--DMSMEDFIEDEEVVITISHEGYIKRTPATEYRTQGRGGKGSKGSDSR 542 Query: 527 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDH 584 D + + ++ ++F TGR + + +P +G + + +P + Sbjct: 543 NEDFIEHLLIASNHNYMLFFTETGRCFWLRVYEIPEGTRLSKGRAIQNIINIPKEEKIKA 602 Query: 585 MLMES--------DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVI 636 + ++ ++M + G + G I + E ++ + Sbjct: 603 FIKVKNLKDQEYLENNYIIMCTKKGTIKKTSLEAYSRPRVNGINAININEGDQLLEASLT 662 Query: 637 EDASDMLLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQ 695 S ++ ++GR + F + + + G + + + ++ + + V P Sbjct: 663 T-GSSEIVMALRSGRAIRFNEEKVRPMGRTATGVRGVTLA----HEKDEVVGMIAVDDPG 717 Query: 696 STLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 +T+ + K K E +VT RG +G + + D+ ++ + + Sbjct: 718 ATILVVSEKGYGKRTDIEDYRVT-NRGGKGV--KTINVTDKTGNLVAIKSVTDADD 770 Score = 90.0 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 83/233 (35%), Gaps = 15/233 (6%) Query: 466 QADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------D 519 +A + ++ + K + + + L + I+ ++ G ++ Sbjct: 586 RAIQNIINIPKEEKIKAFIKVKNLKDQEYLEN-NYIIMCTKKGTIKKTSLEAYSRPRVNG 644 Query: 520 APGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITL--PSARGQGEPLTGKLTLP 577 +N GD A + +V +GR+ + + G Sbjct: 645 INAININEGDQLLEASLTTGSSEIVMALRSGRAIRFNEEKVRPMGRTATGVRGVTLAH-E 703 Query: 578 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAH---VMPPV 634 V + ++ +L+ S+ GYG D NR GK + T+ ++ Sbjct: 704 KDEVVGMIAVDDPGATILVVSEKGYGKRTDIEDYRVTNRGGKGVKTINVTDKTGNLVAIK 763 Query: 635 VIEDASDMLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGL 686 + DA D L+ I ++G ++ VS+L + + +G ++IN+ + + Sbjct: 764 SVTDADD-LMIINKSGIVIRIVVSELRVMGRATQGVRLINLKGNDEIASVARI 815 >UniRef50_A1V9C1 DNA gyrase subunit A n=18 Tax=Bacteria RepID=A1V9C1_DESVV Length = 856 Score = 796 bits (2057), Expect = 0.0, Method: Composition-based stats. Identities = 245/767 (31%), Positives = 399/767 (52%), Gaps = 35/767 (4%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 +++++ + +YL YS+ VI+ RA+P + DGLKPV RRI++A ELG + KKSAR Sbjct: 24 QQISIEKELRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRIMFAQHELGNAYNRPHKKSAR 83 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 VGDV+GKYHPHGDSA Y+A+V MAQ FS R PLVDGQGN+G+ D + AAMRYTE R+ Sbjct: 84 IVGDVIGKYHPHGDSAVYDAIVRMAQEFSMRDPLVDGQGNFGSIDG-DAAAAMRYTEVRM 142 Query: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 S+ + ++++ + T D+ PN+D TL EP +LP R+PN+LLNG+TGIAVGMAT+IPPHNL Sbjct: 143 SRLAGEFIADIEKETVDFRPNYDNTLLEPVVLPTRVPNLLLNGSTGIAVGMATNIPPHNL 202 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245 E+ A + L+D T+D L+D V+GPD+PT + + + Y GRG+V++R Sbjct: 203 GELCNALLHLLDDDACTIDDLMDHVKGPDFPTGGFVYAGQ-GLVDAYTTGRGTVKVRGKV 261 Query: 246 KKEDGA-----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 + E+ +VI +P+ ++ + ++E+IAA + +++ V DLRDESD + ++ + Sbjct: 262 EIEERKKGFQAIVIREIPYGLNKSSLVEKIAALVNERRIDGVADLRDESDRKGIRVVIDL 321 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360 R D V+N L+ T LE SY IN+ + +D RP + +L LS +L RR+ + R Sbjct: 322 KRGTI--PDIVVNALYKYTPLESSYGINMLAV-VDNRPQLLDLKSALSHFLEHRREIIIR 378 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQAEAI 417 R Y L K R HILEGL +A NIDEV+ +IR E K LM RFGL+E Q++AI Sbjct: 379 RTRYDLRKAEARAHILEGLRIALDNIDEVVALIRASATPQEAKDRLMQRFGLSEAQSQAI 438 Query: 418 LELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRR 477 L+++L+ L LE K+ E EL K+ + + IL + + ++++E Y RR Sbjct: 439 LDMRLQRLTNLEHEKLLDEYRELLKKIEYFRSILENIEVLRQVMREEFTEIRDTYATKRR 498 Query: 478 SPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK--------AGD 529 + + +E + ++ D++P + V I LS+ G+++ + K D Sbjct: 499 TEVL-MDELEGIAIEDLIPDDDVVITLSRRGYIKRTTLDNYQQQRRGGKGIAGLHTSDDD 557 Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLM 587 + + ++Q ++ + G+ + + + +G + L L V +L Sbjct: 558 FVQEFLTTTNHQYLLLFTNHGKMHQLKVHQVAEGSRTAKGVHIANLLPLEKDEWVTTVLS 617 Query: 588 ES---DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLL 644 +D+ L + G + + + G + L ++ ++ I + D ++ Sbjct: 618 VREFAEDRFFLFVTKRGMVKRSSASLYARARKGGLIAVGLRDDDELIMVREIHN-DDHVV 676 Query: 645 AITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVG 703 T G + F D+ + + G K + + + L + + Sbjct: 677 LTTGGGMAIRFACPDVRPMGRSATGVKGVALSGDDRVVACAVLPG---DDTSTEIMSISS 733 Query: 704 KRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDS 750 K EL ++ RG +G + + + D Sbjct: 734 NGYGKRTRIELYRLQ-SRGGKGV--KNFRVTPKTGDVIGAMPVRDDE 777 Score = 98.8 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 62/450 (13%), Positives = 129/450 (28%), Gaps = 64/450 (14%) Query: 293 NPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLV 352 + V+ + + L L ++ LD R L Sbjct: 402 DNIDEVVALIRASATPQEAKDRLMQRFGLSEAQSQ----AILDMRLQRLT-------NLE 450 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK---PALMSRFG- 408 + + L+K+ ILE + V + E IR+ K LM Sbjct: 451 HEK--LLDEYRELLKKIEYFRSILENIEVLRQVMREEFTEIRDTYATKRRTEVLMDELEG 508 Query: 409 ------LTETQAEAILELK--LRHLAKLEEMKIRGEQSELEKERDQ----LQGILASERK 456 + + L + ++ + R + +Q L + Sbjct: 509 IAIEDLIPDDDVVITLSRRGYIKRTTLDNYQQQRRGGKGIAGLHTSDDDFVQEFLTTTNH 568 Query: 457 MNNLLKKELQAD----AQAYGDDRRS----------PLQEREEAKAMSEHDMLPSEPVTI 502 LL + R+ PL++ E + + + Sbjct: 569 QYLLLFTNHGKMHQLKVHQVAEGSRTAKGVHIANLLPLEKDEWVTTVLSVREFAEDRFFL 628 Query: 503 VLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID 556 +++ G V+ + + + D + ++ VV G + Sbjct: 629 FVTKRGMVKRSSASLYARARKGGLIAVGLRDDDELIMVREIHNDDHVVLTTGGGMAIRFA 688 Query: 557 PITLPSARGQGEPLTGK--LTLPPGATVDH--MLMESDDQKLLM-ASDAGYGFVCTFNDL 611 P R G TG + L V +L D +M S GYG Sbjct: 689 C---PDVRPMGRSATGVKGVALSGDDRVVACAVLPGDDTSTEIMSISSNGYGKRTRIELY 745 Query: 612 VARNRAGKAL----ITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGK 667 ++R GK + +T V+ + + D + L+ +T +++ V ++ + + Sbjct: 746 RLQSRGGKGVKNFRVTPKTGD-VIGAMPVRD-DEALVLLTSTNKIIRMSVDEVRSVGRAT 803 Query: 668 -GNKIINIPSAEAARGEDGLAQLYVLPPQS 696 G ++ + G D + + V+ + Sbjct: 804 MGVMLVRLDEGAIVVGFDRVDEREVVEESA 833 >UniRef50_A9GW54 DNA gyrase subunit A n=2 Tax=Proteobacteria RepID=A9GW54_SORC5 Length = 873 Score = 795 bits (2053), Expect = 0.0, Method: Composition-based stats. Identities = 242/795 (30%), Positives = 394/795 (49%), Gaps = 66/795 (8%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 +++ + +YL+Y+M VI+ RA+P + DGLKPV RRI+Y+M+E + + KK AR Sbjct: 12 PVSIQDELRTSYLDYAMSVIIGRAIPDVRDGLKPVHRRILYSMNEQKIGPTGAHKKCARV 71 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VGDVLGKYHPHGD A Y+A+V M Q FS RYPL+DGQGN+G+ D S AAMRYTESRLS Sbjct: 72 VGDVLGKYHPHGDLAVYDALVRMGQTFSLRYPLIDGQGNYGSVDG-DSPAAMRYTESRLS 130 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 + + LL++L + T D+VPN+D + EP +LPA+ P +L+NG+ GIAVGMAT+IPPHNL Sbjct: 131 RMAVELLADLDKDTVDFVPNYDDSELEPSVLPAKFPQLLVNGSGGIAVGMATNIPPHNLG 190 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 E+ A IA+I P TL++LL +V GPD+PT I ++ I + Y GRGS+ MR + Sbjct: 191 EIIDATIAIIRNPDVTLEELLHLVPGPDFPTGGLI-YGKSGIVQAYTTGRGSITMRGRSQ 249 Query: 247 KED------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 E +V + +P+QV+ AR++ +IA M+ K++ + ++RDESD E +V + Sbjct: 250 VEKTMKGDREQLVFTEIPYQVNKARLVAKIAECMKEKRIEGISEVRDESDREGMRIVVEL 309 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360 + + V+N L+ TDL+ ++ + +N+ +GRPAV +L + LS ++ RR+ V R Sbjct: 310 KK--DIFPQVVLNQLYRLTDLQATFGV-INLSIANGRPAVLSLKDTLSHFIEHRREVVTR 366 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMS------------ 405 R + L + + ++EGL +A +ID ++ IR D+ + L Sbjct: 367 RCRFELRQAESQRELVEGLGMATSDIDRIVATIRASSDPDDARENLQKLPLRGLGEFLRR 426 Query: 406 ---------------RFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450 + L+E QA+AILE++L L LE K+ E EL + ++L+ I Sbjct: 427 AGRPEPECAEADTRGDYFLSERQAKAILEMRLSRLTGLEREKLAKEYGELSQTIERLRAI 486 Query: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510 LA + N++ EL+ +GD RR+ + E + D++ E + + +S G++ Sbjct: 487 LADMGLLMNVIVMELEEIKARFGDKRRTEIVPAE--AEIQMEDLIQEEDMVVTISHAGYL 544 Query: 511 RSAKGHDIDAP--------GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562 + A G+ + D ++ V F G+ + +P Sbjct: 545 KRTPTSTYRAQRRGGKGMVGMEAREEDWVSQLFVASTHSYVFFFSDKGKVFVKKVYEIPQ 604 Query: 563 A--RGQGEPLTGKLTLPPGATVDHMLM---ESDDQKLLMASDAGYGFVCTFNDLVARNRA 617 A +G + + + PG V + + ++ + G N+ Sbjct: 605 APRNAKGRAIVNFVGMEPGEKVAAITPVPSFDGETFVVTLTRRGQIKKTALNEYENYRDK 664 Query: 618 GKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPS 676 G + + E + + D L+ T++G + FP + + G K I + Sbjct: 665 GIIGVRIEEGDQLFTAAL-TDGKRELVIATRSGMSIRFPEDQVRPTGRATMGVKGIELDE 723 Query: 677 AEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDR 736 + G + + + K P E ++ RG +G ++ +R Sbjct: 724 GDVVVGLGV-----SGDGRDRVLAVCERGYGKQTPLEEFRLQ-SRGGKGVILIDAS--ER 775 Query: 737 VEIDSPRRASSGDSE 751 S E Sbjct: 776 NGPVVGVAMVSPSDE 790 Score = 92.7 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 85/212 (40%), Gaps = 15/212 (7%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKA 533 ++ E+ A++ E + L++ G ++ ++ G+ + GD Sbjct: 620 MEPGEKVAAITPVPSFDGETFVVTLTRRGQIKKTALNEYENYRDKGIIGVRIEEGDQLFT 679 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITL-PSARG-QGEPLTGKLTLPPGATVDHMLMESDD 591 A + +V +G S + P+ R G + L G V + + D Sbjct: 680 AALTDGKRELVIATRSGMSIRFPEDQVRPTGRATMG---VKGIELDEGDVVVGLGVSGDG 736 Query: 592 QKLLMAS-DAGYGFVCTFNDLVARNRAGKALITLPENAH--VMPPVVIEDASDMLLAITQ 648 + ++A + GYG + ++R GK +I + + + V + SD +L +T Sbjct: 737 RDRVLAVCERGYGKQTPLEEFRLQSRGGKGVILIDASERNGPVVGVAMVSPSDEVLIVTD 796 Query: 649 AGRMLMFPVSDLPQLSK-GKGNKIINIPSAEA 679 G+M+ S++ + + +G +I+++ E Sbjct: 797 RGQMIRTKTSEIRETGRNAQGVRIMHVGQDER 828 >UniRef50_B2RJ49 DNA gyrase A subunit n=17 Tax=Bacteria RepID=B2RJ49_PORG3 Length = 859 Score = 794 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 243/776 (31%), Positives = 397/776 (51%), Gaps = 45/776 (5%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 D +++ E + AY++YSM VI+ RALP + DG KPV RR++YAM+E G + +K Sbjct: 6 DRIINISIEEEMKTAYIDYSMSVIVSRALPDVRDGFKPVHRRVLYAMNETGNVYTNPTRK 65 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 A VG+VLG YHPHGDS+ Y A+V MAQP+S RYPLVDGQGN+G+ D S AAMRYTE Sbjct: 66 CANAVGEVLGHYHPHGDSSVYMALVRMAQPWSLRYPLVDGQGNFGSVDG-DSPAAMRYTE 124 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 SRLS+ + +L ++ + T D+ NFD T QEP +LP R+PN+L+NG +GIAVGMAT++PP Sbjct: 125 SRLSRIAGEMLQDIDKETVDFQNNFDDTRQEPTVLPTRIPNLLINGASGIAVGMATNMPP 184 Query: 183 HNLREVAQAAIALID-QPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 HNL E +A I+ ++ L+ V+ PD+PT I + +++ +E GRG V + Sbjct: 185 HNLSEAIDGCVAYIEADGDIDVEGLMQYVKAPDFPTGGFI-YGYSGVKEAFETGRGRVVI 243 Query: 242 RAVWKKED----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 R+ + E ++I+ +P+ V+ A ++ IA + K+L + ++ DES+ + + Sbjct: 244 RSRAEIEQHNNHERIIITEIPYLVNKAELVSNIAQLINEKRLDGISNISDESNRKGMRIV 303 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 V + R + V+N L+ T L+ S+ +N N+ + GRP + NL +++ E++ R++ Sbjct: 304 VEIKR--DANASVVLNKLYKMTALQSSFSVN-NIALVKGRPRLLNLKDLIGEFVDHRQEV 360 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQA 414 V RR + L K +R HILEGLL+A NIDEVI IIR+ + A L+ RF L++ QA Sbjct: 361 VTRRCRFELRKARERAHILEGLLIAVDNIDEVISIIRSSKDAAEAMSRLIERFDLSDIQA 420 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 +I++++LR L LE K+R E E+ + L+ +LA + L+K EL + YGD Sbjct: 421 RSIVDMRLRALTGLERDKLRAEFEEIMASINHLEALLADRALLMELVKSELLEIKEKYGD 480 Query: 475 DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GLNYK 526 R+S + E + D + + I LS MG+++ + G + + Sbjct: 481 TRKSEIIYASE--EFNPEDFYADDDMIITLSHMGYIKRTPLSEFRTQARGGVGAKGSDTR 538 Query: 527 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDH 584 D + + ++ + GR Y + +P +G + L + P V+ Sbjct: 539 EEDFVEYIYSASMHATIMLFTAKGRCYWLKVYEIPEGAKNAKGRAIQNLLNIDPDDKVNA 598 Query: 585 MLMES---------DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVV 635 + + LL + G G I L +N ++ + Sbjct: 599 FIRIKNLTTDKEFVNSHYLLFCTKRGIIKKTLLEAFSRPRANGVIAIDLRDNDGLVSVRL 658 Query: 636 IEDASDMLLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVL-- 692 + ++ + GR + F S + + G K + + GED + + + Sbjct: 659 -TNGKCDMVIANRGGRAIRFHESVVRPSGRTAMGVKGMTLDDD----GEDEVVGMISIKH 713 Query: 693 PPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSG 748 P + T+ + K K + ++T RG +G + L ++ RA + Sbjct: 714 PEEETILVVSEKGYGKRSNIDDYRIT-NRGGKGV--KTLNITEKTGKLVDIRAVTD 766 Score = 80.0 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 77/224 (34%), Gaps = 15/224 (6%) Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFK 532 + K ++ + + ++ G ++ ++ + D Sbjct: 595 KVNAFIRIKNLTTDKEFVNSHYLLFCTKRGIIKKTLLEAFSRPRANGVIAIDLRDNDGLV 654 Query: 533 AAVKGKSNQPVVFVDSTGRSYAID--PITLPSARGQGEPLTGKLTLPPGATVDHM-LMES 589 + +V + GR+ + G V + + Sbjct: 655 SVRLTNGKCDMVIANRGGRAIRFHESVVRPSGRTAMGVKGMTLDDDGEDEVVGMISIKHP 714 Query: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP---ENAHVMPPVVIEDASDMLLAI 646 +++ +L+ S+ GYG +D NR GK + TL + ++ + DA+D L+ I Sbjct: 715 EEETILVVSEKGYGKRSNIDDYRITNRGGKGVKTLNITEKTGKLVDIRAVTDAND-LMII 773 Query: 647 TQAGRMLMFPVSDLPQLSKG-KGNKIINIPS-AEAARGEDGLAQ 688 ++G + V+DL + + +G K+I++ + + Sbjct: 774 NKSGVAIRVKVADLSIIGRATQGVKLIDLSKRGDEIASVCSVVS 817 >UniRef50_Q55738 DNA gyrase subunit A n=43 Tax=cellular organisms RepID=GYRA_SYNY3 Length = 860 Score = 794 bits (2052), Expect = 0.0, Method: Composition-based stats. Identities = 262/804 (32%), Positives = 405/804 (50%), Gaps = 66/804 (8%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 D L +YL Y+M VI+ RALP DGLKPV RRI+YAM ELGL F+K Sbjct: 6 DRLIATDLRNEMSQSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTPDRPFRK 65 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 AR VG+VLGKYHPHGD+A Y+A+V MAQ FS R PL+DG GN+G+ D AAMRYTE Sbjct: 66 CARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMREPLIDGHGNFGSVD-NDPPAAMRYTE 124 Query: 123 SRLSKY-SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 SRL + LL ++ T D++ NFDG+ QEP +LPAR+P +L+NG++GIAVGMAT+IP Sbjct: 125 SRLRPLSTNSLLRDIEAETVDFIDNFDGSQQEPTVLPARIPQLLINGSSGIAVGMATNIP 184 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNL EV AIALI P+ T +L+ I+ GPD+PT A+I+ R+ IR+ Y GRGS+ M Sbjct: 185 PHNLGEVIDGAIALIRNPEITEQELMQIIPGPDFPTGAQIL-GRSGIREAYLTGRGSITM 243 Query: 242 RAVWKKE---------DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHE 292 R V E A++++ LP+Q + A ++E+IA + +KK+ + D+RDESD + Sbjct: 244 RGVASIETMEHPGRPDRDAIIVTELPYQTNKAALIERIADLVNDKKIDGIADIRDESDRD 303 Query: 293 NPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLV 352 ++ + R V+N+L+ T ++ ++ NL + ++G P V + + L+ + Sbjct: 304 GMRIVIELKR--DAYARVVLNNLYKQTPIQSNFGANL-LALVNGTPEVLTIKKFLTVFWE 360 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGL 409 FR +T+ RR Y L K +R H+L+GLL+A N+D VI +IR + K L+ F L Sbjct: 361 FRIETITRRTRYELRKAEERDHLLQGLLIALDNLDAVIRLIRGAADTASAKTELVEGFSL 420 Query: 410 TETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADA 469 +E QA+AIL+++LR L LE KI E EL+ + Q ILA ++N ++++EL+ Sbjct: 421 SEVQADAILQMQLRRLTALEADKITAEHDELQTKIADFQDILARRERVNAIIEEELEQIK 480 Query: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGL------ 523 + RR+ + + E + + D++ ++ I+L++ G+++ Sbjct: 481 AIHATPRRTVIVQ--EDGELIDTDLIANDQALILLTEQGYIKRMPASTFGTQNRATRGKA 538 Query: 524 --NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPG 579 K D + + + V+F G Y+++ +P S +G P+ L +P Sbjct: 539 AAKIKDDDGVEHFLSCCDHDKVLFFSDRGVVYSLNAYQIPIASRTARGVPIVQMLPIPKD 598 Query: 580 ATVDHMLM---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVI 636 + ++ DD +M + GY + G I+L E + V + Sbjct: 599 EKITSLVSVSEFDDDTYFIMLTKQGYIKKTALSAFSNIRANGLIAISLVEGDQL-RWVRL 657 Query: 637 EDASDMLLAITQAGRMLMFPV--SDLPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVL- 692 A D ++ +Q G + F +L L + +G K + + S +A D L V Sbjct: 658 AKAEDSVIIGSQKGMAIHFKADQDELRALGRATRGVKSMRLRSGDALISMDILPSQVVAN 717 Query: 693 -------------------------PPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTL 727 P L K K P ++ R G Sbjct: 718 IAVGSEDEPDEDLGGDTDAILEESDNPGPWLLGVTMKGFGKRVPIGQFRLQ-HRAGLGVK 776 Query: 728 MRGLQRIDRVEIDSPRRASSGDSE 751 + + + + D E Sbjct: 777 AIRFK--SKDDQLVALHVVNADDE 798 Score = 73.8 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 36/246 (14%), Positives = 80/246 (32%), Gaps = 42/246 (17%) Query: 483 REEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVK 536 E+ ++ + I+L++ G+++ ++ GD + Sbjct: 598 DEKITSLVSVSEFDDDTYFIMLTKQGYIKKTALSAFSNIRANGLIAISLVEGDQLRWVRL 657 Query: 537 GKSNQPVVFVDSTGRSYAIDPIT------------LPSARGQ-GEPLTGKLTLP------ 577 K+ V+ G + + S R + G+ L LP Sbjct: 658 AKAEDSVIIGSQKGMAIHFKADQDELRALGRATRGVKSMRLRSGDALISMDILPSQVVAN 717 Query: 578 --------PGATVD----HMLMESDDQKLLM--ASDAGYGFVCTFNDLVARNRAGK--AL 621 P + +L ESD+ + + G+G ++RAG Sbjct: 718 IAVGSEDEPDEDLGGDTDAILEESDNPGPWLLGVTMKGFGKRVPIGQFRLQHRAGLGVKA 777 Query: 622 ITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAA 680 I + + + +A D L+ +T G ++ V+D+ S+ G ++ + + +A Sbjct: 778 IRFKSKDDQLVALHVVNADDELMIVTNRGIIIRQSVNDISPQSRSATGVRVQRLDADDAI 837 Query: 681 RGEDGL 686 + Sbjct: 838 AAVALV 843 >UniRef50_P43702 DNA topoisomerase 4 subunit A n=115 Tax=Bacteria RepID=PARC_HAEIN Length = 747 Score = 788 bits (2035), Expect = 0.0, Method: Composition-based stats. Identities = 521/741 (70%), Positives = 625/741 (84%), Gaps = 1/741 (0%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + E++ L FTE AYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNA+AK+KK Sbjct: 7 EGIEQMPLRTFTEKAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNATAKYKK 66 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SARTVGDVLGK+HPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE Sbjct: 67 SARTVGDVLGKFHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 126 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 SRLSK SE+LL+ELGQGT D+ PNFDGTL EP+ LPARLP+ILLNGTTGIAVGMATDIPP Sbjct: 127 SRLSKISEILLNELGQGTVDYQPNFDGTLAEPQYLPARLPHILLNGTTGIAVGMATDIPP 186 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HN+ E+A AA+ L+D PK LD +L+IVQGPD+PTEAEII+ ++EIRKIYE GRGS++MR Sbjct: 187 HNINEIADAAVMLLDNPKAGLDDVLEIVQGPDFPTEAEIISPKSEIRKIYEQGRGSIKMR 246 Query: 243 AVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 A WKKEDG ++ISALPHQ S ++V+ QIA QM KKLPM++D+RDE+DHENP R+V+VPR Sbjct: 247 ATWKKEDGEIIISALPHQSSPSKVIAQIAEQMTAKKLPMLEDIRDEADHENPIRIVLVPR 306 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRL 362 SNRVD D +M HLFATTDLEKSYR+N+NMIGLD +PAVK LLEIL+EWL FRR TV RRL Sbjct: 307 SNRVDTDALMAHLFATTDLEKSYRVNMNMIGLDHKPAVKGLLEILNEWLDFRRTTVTRRL 366 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKL 422 YRL+KVL RLHILEGL++AFLNIDEVIEIIR+ED+PK LM+RF L++ QA+AIL L+L Sbjct: 367 QYRLDKVLSRLHILEGLMIAFLNIDEVIEIIRHEDDPKAELMARFNLSDEQADAILNLRL 426 Query: 423 RHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQE 482 RHLAKLEE +++ EQ ELEKER L+ IL SER++N L+KKE+Q DA+ Y + R S L E Sbjct: 427 RHLAKLEENQLKAEQDELEKERLNLEAILGSERRLNTLIKKEIQEDAKKYANPRMSQLVE 486 Query: 483 REEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQP 542 REEAK +SE DM P+EPVT++LS+MGWVR AKGHDID L+YKAGDS+ A GKSNQ Sbjct: 487 REEAKMISESDMTPAEPVTVILSEMGWVRCAKGHDIDPKSLSYKAGDSYLAHACGKSNQA 546 Query: 543 VVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGY 602 VVF+DSTGRSYA+DP++LPSAR QGEPLTGKL LP GAT+++++M S+ Q+LLMASDAGY Sbjct: 547 VVFIDSTGRSYALDPLSLPSARSQGEPLTGKLNLPTGATIEYVVMASEQQELLMASDAGY 606 Query: 603 GFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQ 662 GF+C F DL+ARN+AGKALI+LPENA V+ P + +++ +++AIT AGRML+FP DLP Sbjct: 607 GFICKFEDLIARNKAGKALISLPENAKVLKPKTLINSTALVVAITSAGRMLIFPAQDLPV 666 Query: 663 LSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERG 722 LSKGKGNK+I IP+A A + L +L ++ Q++L + GKRKI L+PE+LQK ERG Sbjct: 667 LSKGKGNKMITIPAANAKDRSELLTKLLLISDQASLEFYSGKRKIVLKPEDLQKFRAERG 726 Query: 723 RRG-TLMRGLQRIDRVEIDSP 742 R+G TL RGL + + P Sbjct: 727 RKGSTLPRGLHTNLEIMVIEP 747 >UniRef50_C8PS29 DNA gyrase, A subunit n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PS29_9SPIO Length = 838 Score = 787 bits (2034), Expect = 0.0, Method: Composition-based stats. Identities = 232/769 (30%), Positives = 394/769 (51%), Gaps = 38/769 (4%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 +++ + AY++YSM VI+ RALP + DGLKPV RRI+Y+M E L S +K A Sbjct: 12 LIPISIENEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYSMEEKNLRYSGPTRKCA 71 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 + VGDVLG YHPHGD++ Y+A+V + Q FS RYP++ QGN+G AA RYTE++ Sbjct: 72 KIVGDVLGSYHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTI-GGDPPAAYRYTEAK 130 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 +++ +E ++ ++ + T D++PNFD + QEP +LP + P +L NG++GIAVGMAT++PPHN Sbjct: 131 MARLAESMVEDIKKDTVDFIPNFDDSTQEPTVLPGKFPFLLANGSSGIAVGMATNMPPHN 190 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 LRE+AQA A ID P T+D+L ++GPD+PT II + IR+ ++ GRG + +R Sbjct: 191 LREIAQAVSAYIDNPDITIDELAKYIKGPDFPTGG-IIFGKKGIRQAFKTGRGKILVRGR 249 Query: 245 WKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 + E ++ + +P+QV+ ++ +I R K + + + DE+ RLVI Sbjct: 250 FNIEVDKKGKETIIFTEVPYQVNTTALVSKIGELAREKVIEGIAAVNDETSDRAGLRLVI 309 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 + + V+N LF+ T L+ S+ + +N+ + GRP L +++ ++ R++ V Sbjct: 310 ELKRGAI-AKVVLNQLFSKTALQSSFGV-INLALVGGRPQTLTLKQLVGYFVAHRQEVVT 367 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAEA 416 RR+ + L+K +R HIL L+VA NIDEVI+IIR + K ALM RF + QA+A Sbjct: 368 RRVRFDLKKAEERAHILRALIVAIDNIDEVIKIIRGSRDTASAKNALMERFSFDDVQAQA 427 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDR 476 I++++L+ L LE +R E ELE + L+ +LA K+ L+K+E A+ +GDDR Sbjct: 428 IVDMQLKRLTSLEIEDLRKELQELEVLIEHLKDLLAHPEKILALIKQETNELAEKFGDDR 487 Query: 477 RSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK--------AG 528 R+ + +E + ++ D++ E + +++S +G+++ K Sbjct: 488 RTDIV-SDEVEEINIEDLIKKEQMVVLVSNLGYIKRVPVTAYKRQNRGGKGSNSAALVED 546 Query: 529 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHML 586 D ++ ++F+ + G++Y + +P A +G + L + + ++ Sbjct: 547 DFIDQIFTASTHDYIMFITNEGKAYWVKVHEIPEASRTSRGSHIKSLLAVSSDEEITTIV 606 Query: 587 MESD---DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDML 643 + D LLMA+ G + G I L E ++ ++ D L Sbjct: 607 SLKEFSSDTYLLMATAGGIVKKVQTDSFQNAKTRGIIAIKLDEGDKLVSA-ILTTGKDEL 665 Query: 644 LAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHV 702 + +T+ G+ L +++ + G I + + G + L + Sbjct: 666 MLVTRQGQALRVSEAEIRDQGRASHGVIGIRLSGGDELTGALRI-------NNGKLLVMS 718 Query: 703 GKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K G RG G + ++ A + D E Sbjct: 719 ENGYGKRVDFSEFSPHG-RGTGGQKV--YTVTEKTGEVVGLLAVADDDE 764 Score = 89.6 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 86/218 (39%), Gaps = 13/218 (5%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKA 533 + EE + S+ ++ + G V+ + + GD + Sbjct: 596 VSSDEEITTIVSLKEFSSDTYLLMATAGGIVKKVQTDSFQNAKTRGIIAIKLDEGDKLVS 655 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQK 593 A+ ++ V G++ + + +G+ + L G + L ++ + Sbjct: 656 AILTTGKDELMLVTRQGQALRVSEAEIRD-QGRASHGVIGIRLSGGDELTGALRINNGKL 714 Query: 594 LLMASDAGYGFVCTFNDLVARNRA--GKALITLPENA-HVMPPVVIEDASDMLLAITQAG 650 L+M S+ GYG F++ R G+ + T+ E V+ + + D D ++ IT G Sbjct: 715 LVM-SENGYGKRVDFSEFSPHGRGTGGQKVYTVTEKTGEVVGLLAVAD-DDEIVCITGQG 772 Query: 651 RMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLA 687 + + VS + + + G +I++I S + G D +A Sbjct: 773 KTIRVQVSSINVMGRAAQGVRILDIESPDQLIGLDVVA 810 >UniRef50_C9M5P0 DNA gyrase, A subunit n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M5P0_9BACT Length = 836 Score = 785 bits (2027), Expect = 0.0, Method: Composition-based stats. Identities = 255/769 (33%), Positives = 402/769 (52%), Gaps = 36/769 (4%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 L E +++YL+Y+M VI+ RALP DGLKPVQRRI+YAM LG+ + +KKS Sbjct: 10 RVTVHPLVEEIKHSYLDYAMSVIVGRALPDARDGLKPVQRRILYAMMGLGIKHNQPYKKS 69 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VG+ +GKYHPHGDSA YE MV +AQ +S RYPLVDGQGN+G+ D S AAMRYTE+ Sbjct: 70 ARVVGETMGKYHPHGDSAIYETMVRLAQEWSMRYPLVDGQGNFGSIDG-DSAAAMRYTEA 128 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 R ++ EL+L+++ + T DW PNFD +L+EP LP+ LPN+L+NG+TGIAVGMAT++ PH Sbjct: 129 RFAETGELMLADIDEDTVDWGPNFDESLKEPLTLPSALPNLLINGSTGIAVGMATNMAPH 188 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL EV A LI +P LD L+ + GPD+PT II R I Y GRG + +R Sbjct: 189 NLGEVVDALRLLIRRPDAELDDLMSCLPGPDFPTGG-IIMGREGILDAYRTGRGKIILRG 247 Query: 244 VWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 E VVI+ +P+ ++ ++E I ++ K++ V D+RDESD + +V Sbjct: 248 KCHVEQKSRSKTNVVITEIPYMINKTTLIESIVKGVQGKQIDGVSDIRDESDRKGLRLVV 307 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + R D + V L++ T L+ ++ I +N+ +D +P NL ++L +L +RR V Sbjct: 308 ELTR--EADAELVQRQLYSRTSLQSTFGI-INLALVDNKPVELNLKQLLETFLNYRRSVV 364 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAE 415 RRR +RL+K R HI+EGL A ID+VI IIR D+ K L+ T+ QA+ Sbjct: 365 RRRTQFRLDKAEARRHIVEGLCKALDVIDQVIAIIRGAQTADDAKAGLIGELAFTDLQAQ 424 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 AIL+++L+ L LE K+ E ++L + ++ + IL + ++ ++ EL + + D+ Sbjct: 425 AILDMRLQRLTGLEREKLLAELAQLLADIERYRSILDNPSVLDGVINDELGELRRKFADE 484 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN--------YKA 527 RR+ L + S D+LP E + + LS+ G++R + + + K Sbjct: 485 RRTELSAALPTEGDSLEDLLPEEDILVTLSKDGFLRRSPLENYNLQNRGGKGRLGAVLKD 544 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR-GQGEPLTGKLTLPPGATVDHM- 585 D ++ + S GR +AI +P + G+G ++ ++L V M Sbjct: 545 DDEVGQMAVTSTHSDIFLFTSRGRVFAIRGHMIPETKTGKGRAVSKFVSLTDDERVVAMR 604 Query: 586 --LMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDML 643 L E+ LL + G G +L RAG+ +++L + + ++ D + + Sbjct: 605 GTLEETATSHLLFITKRGIGKRMDAEELENLTRAGRRVLSLDDGDE-IAAIIDTDGNSKV 663 Query: 644 LAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHV 702 L +T + S+ + + +G K + + +D + + + P L + Sbjct: 664 LLVTSKAKAAHVDESEFRPMGRAARGVKAMKL------APDDRIIAAWTVAPDENLLLVS 717 Query: 703 GKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K E + RG G + + R + + E Sbjct: 718 ETGIGKRTKPEEFPIH-HRGSGGV--QAMHLGARTGRLAAAVGVASSDE 763 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 77/219 (35%), Gaps = 14/219 (6%) Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFK 532 L + E AM + + +++ G + ++ L+ GD Sbjct: 593 SLTDDERVVAMRGTLEETATSHLLFITKRGIGKRMDAEELENLTRAGRRVLSLDDGDEIA 652 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLMESD 590 A + N V+ V S ++ + R G G + L P + + Sbjct: 653 AIIDTDGNSKVLLVTSKAKAAHV---DESEFRPMGRAARGVKAMKLAPDDRIIAAWTVAP 709 Query: 591 DQKLLMASDAGYGFVCTFNDLV--ARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQ 648 D+ LL+ S+ G G + R G + L + V +SD + +T+ Sbjct: 710 DENLLLVSETGIGKRTKPEEFPIHHRGSGGVQAMHLGARTGRLAAAVGVASSDEVGLMTE 769 Query: 649 AGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGL 686 GRM+ SD+P LS+ G+ ++ + + + Sbjct: 770 KGRMIRLSASDIPLLSRTATGSIVLRLNDGDLLASVSVI 808 >UniRef50_O33926 DNA gyrase subunit A n=8 Tax=Thermotogaceae RepID=GYRA_THEMA Length = 804 Score = 784 bits (2025), Expect = 0.0, Method: Composition-based stats. Identities = 248/771 (32%), Positives = 427/771 (55%), Gaps = 33/771 (4%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 M ++ + + +YL YSM VI+ RA+P + DGLKPVQRRI+Y M ELGL ++ Sbjct: 1 MPEILINKPVEDELVESYLLYSMSVIVGRAIPDVRDGLKPVQRRILYGMYELGLKHNSPT 60 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VG+V+GKYHPHGD+ Y+A+V MAQPF+ RYPL++GQGN+G+ D AAMRY Sbjct: 61 KKSARIVGEVMGKYHPHGDAPVYDALVRMAQPFTMRYPLIEGQGNFGSID-RDPPAAMRY 119 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RL++ +E +L ++ + T + + NFDGTL+EP++LP+++PN+++NG +GIAVGMAT+I Sbjct: 120 TEARLTRLAEEMLEDIEKNTVNMIDNFDGTLKEPEVLPSKVPNLIINGASGIAVGMATNI 179 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL E A I LID P+ T+++L+ ++GPD+PT A ++ + +E++K+YE GRG + Sbjct: 180 PPHNLSETVDALIYLIDHPEATVEELMQFIKGPDFPTGAVVVNA-SELKKVYEEGRGRII 238 Query: 241 MRAVWKKED----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 +R ED +VI+ +P+ VS A ++EQIA ++ + + ++RDESD Sbjct: 239 VRGKVHVEDGKRVKRIVITEIPYGVSKAGLIEQIAKIAKDDESLPIRNIRDESDKRGMRI 298 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 ++ +P+ + + ++N+L+ T L+ + + + +I RP + NL ++ +L R + Sbjct: 299 VIEIPK--DANEEVIINNLYKRTALQDYFNVQMLVIDKHKRPRLMNLKGLMEAFLEHRFE 356 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQ 413 +RRR Y E+ +R H++EGLL A I V++I+RN + + +LM +TE Q Sbjct: 357 VIRRRARYEYEQYTRRAHVVEGLLKAARAIGVVVDIVRNSKDVESARQSLMETLEITEEQ 416 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 A+AIL+++L L LE ++ E S+L ++ +++ IL + K+ ++KKE Q YG Sbjct: 417 AKAILDMRLSRLTSLEIENLQNEYSDLVRKISEVKEILEKDEKVKEIMKKEFLYLKQQYG 476 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK------- 526 D RR+ + + ++ +E +++ E V I LS G+++S + + K Sbjct: 477 DPRRTEVTD--QSIEYNEEELIVEEDVVITLSHKGYLKSTPLNSYRSQKRGGKGITVSKL 534 Query: 527 -AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS--ARGQGEPLTGKLTLPPGATVD 583 D + V K+ +F+ + GR+Y + L + +G +T L L + Sbjct: 535 SEDDEVEFVVVAKNTSSTLFITNLGRAYVLKNYQLETTGRNTRGRHITAFLNLEDTEKIV 594 Query: 584 HMLMES-DDQKLLMASDAGYGFVCTFNDLVARNRA-GKALITLPENAHVMPPVVIEDASD 641 + + + + L++A+ +G + G I + ++ V+ + Sbjct: 595 ALASLNGEGRDLVIATKSGKIKRTALKEFENATSNRGVRAIKIEPGDEIVSARVVNSEKE 654 Query: 642 MLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI 700 L+ T+ G + FPVSD+ ++ + G + I + + D + + + Sbjct: 655 TLIVATKMGMAIRFPVSDVRRMGRNAAGVQAIKLQPGDEVVSVDVIPPG----EEGEILT 710 Query: 701 HVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K K P +L ++ RG G +R + +++ R GD E Sbjct: 711 VTEKGFGKRTPVQLYRIQ-RRGGTG--LRNISDVNKTGYVVAVRYVRGDEE 758 Score = 89.2 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 87/231 (37%), Gaps = 22/231 (9%) Query: 478 SPLQEREEAKAMSEHDMLPSE-PVTIVLSQMGWVRSAKGHDI-------DAPGLNYKAGD 529 + E+ + + L E ++ ++ G ++ + + + GD Sbjct: 582 TAFLNLEDTEKIVALASLNGEGRDLVIATKSGKIKRTALKEFENATSNRGVRAIKIEPGD 641 Query: 530 SFKAAVKGKS-NQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHM--L 586 +A S + ++ G + + G+ + L PG V + + Sbjct: 642 EIVSARVVNSEKETLIVATKMGMAIRFPVSDV-RRMGRNAAGVQAIKLQPGDEVVSVDVI 700 Query: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHV--MPPVVIEDASDMLL 644 ++ ++L ++ G+G + R G L + + + V + ++ Sbjct: 701 PPGEEGEILTVTEKGFGKRTPVQLYRIQRRGGTGLRNISDVNKTGYVVAVRYVRGDEEIV 760 Query: 645 AITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPP 694 +T+ G M+ FPVS++ + + KG K+I + G+D ++++ V+ Sbjct: 761 VVTRNGMMIRFPVSEIGVIGRVTKGVKLIEL-------GDDTISKVAVVKD 804 >UniRef50_C7H1V9 DNA gyrase, A subunit n=3 Tax=Clostridiales RepID=C7H1V9_9FIRM Length = 854 Score = 784 bits (2025), Expect = 0.0, Method: Composition-based stats. Identities = 245/743 (32%), Positives = 391/743 (52%), Gaps = 40/743 (5%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 + + E A+L+YSM VI+ RALP + DGLKPV RRI+Y M E G + S ++KSA TVG Sbjct: 19 DVKKEIETAFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMHERGNDPSHAYRKSADTVG 78 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 VLG YHPHGD++ Y+AMV +AQ FS RYPLVDGQGN+G+ D AA RYTE+R+S+ Sbjct: 79 AVLGSYHPHGDASVYDAMVRLAQDFSLRYPLVDGQGNFGSVDG-DPPAAYRYTEARMSRM 137 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 + +L+++ + T DW PNFD T +EP +LP R PN+L+NG+ GIAVGMAT+IPPHNL EV Sbjct: 138 AVEMLTDIDKDTIDWDPNFDETKKEPSVLPCRFPNLLVNGSQGIAVGMATNIPPHNLSEV 197 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248 +A I+ P L L++ ++GPD+PT II R+ IR Y GRG + +R E Sbjct: 198 IDGCVAYIEDPDIDLPGLMEHIKGPDFPTAG-IIMGRSGIRAAYATGRGKITLRGRATIE 256 Query: 249 DG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 + ++++ +P+ V+ AR++E IA ++ K++ + DL DE++ + ++ V + Sbjct: 257 EKKNGRAQIIVTEIPYMVNKARLIENIADLVKEKRIEGISDLNDETNRKGMRIVIDVRK- 315 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLN 363 + V+N L+ T L+ + + + I P V L +++ +++ F+ + VRRR Sbjct: 316 -DANPQVVLNQLYQYTQLQDTVGVIMLAIDH-KVPKVMTLKQMIQKYVEFQDEVVRRRTQ 373 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED----EPKPALMSRFGLTETQAEAILE 419 Y L+K +R HILEGL A +DE+I IR E K A+M +FG + QA+AI++ Sbjct: 374 YDLKKARERAHILEGLKKATDIVDELIATIRACKGGMSEAKAAIMEQFGFDDPQADAIVK 433 Query: 420 LKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSP 479 L+L LA LE +KI E L + + ILA + ++ ++K EL + +GDDRR+ Sbjct: 434 LQLGRLAGLEILKIEEELGSLNAKIRDWEEILADDARVLEIVKSELLEMKRRFGDDRRTE 493 Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS--------AKGHDIDAPGLNYKAGDSF 531 ++ + D++ E L++ G+++ K G+ K D Sbjct: 494 IETV--TGEVDIEDLIAEEQCVYTLTEAGYIKRQLKATYQAQKRGGRGISGMTRKEEDIV 551 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLME- 588 + G ++ V+FV GR + I T+ +G + L L G V +ML + Sbjct: 552 QEMFVGSTHDYVLFVTDKGRLFRIKGYTIAEGSRTSKGTNIVNLLQLAEGEKVTNMLCQS 611 Query: 589 ----SDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLL 644 ++ + M + G ++G I L E + + DML+ Sbjct: 612 KDTANEGGFVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNEGDAL-AWTRLTSGHDMLI 670 Query: 645 AITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVG 703 T+ G+ + F D + + G G + I + D + + + +T+ Sbjct: 671 VATRNGQAIRFNEEDARPMGRSGHGVRAIKLAEG------DEVVGVCICRENATILTVTE 724 Query: 704 KRKIKLRPEELQKVTGERGRRGT 726 K + + ++T RG +G Sbjct: 725 NGKGRRSDIDTYRITA-RGGKGI 746 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 68/201 (33%), Gaps = 12/201 (5%) Query: 489 MSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKSNQP 542 D ++++ G ++ G+ GD+ + Sbjct: 609 CQSKDTANEGGFVTMVTKQGLIKRTPLEQYANIRKSGLIGIALNEGDALAWTRLTSGHDM 668 Query: 543 VVFVDSTGRSYAIDPITLPSARGQGE--PLTGKLTLPPGATVDHMLMESDDQKLLMASDA 600 ++ G++ + AR G + L G V + + ++ +L ++ Sbjct: 669 LIVATRNGQAIRFNE---EDARPMGRSGHGVRAIKLAEGDEVVGVCICRENATILTVTEN 725 Query: 601 GYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDL 660 G G + R GK + + + V I D D +L +Q G ++ +++ Sbjct: 726 GKGRRSDIDTYRITARGGKGIRNYDASKDKVAAVKIVDDVDDVLLSSQEGIIIRLHANEI 785 Query: 661 PQLSK-GKGNKIINIPSAEAA 680 P S+ G G +++ + + Sbjct: 786 PVQSRYGSGVRVMRLGENDKV 806 >UniRef50_C7MEZ8 DNA gyrase subunit A n=21 Tax=Actinobacteridae RepID=C7MEZ8_BRAFD Length = 943 Score = 784 bits (2025), Expect = 0.0, Method: Composition-based stats. Identities = 242/784 (30%), Positives = 393/784 (50%), Gaps = 51/784 (6%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 D ++ L+ + +YL+Y+M VI+ RALP + DGLKPV RRIVYAM + G F K Sbjct: 68 DRITQIDLNHEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRIVYAMFDGGYRPDRSFSK 127 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 A+ VG+V+G YHPHGDSA Y+AMV + QP+S RYPL+ GQGN+G+ AA RYTE Sbjct: 128 CAKVVGEVMGNYHPHGDSAIYDAMVRLVQPWSMRYPLILGQGNFGS-AGDDGAAAPRYTE 186 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +++ + L+ ++ Q T D N+D T+ EP +LPAR PN+L+NG+ GIAVGMAT+IPP Sbjct: 187 CKMAPLALELVRDIEQDTVDMQGNYDNTVDEPTVLPARFPNLLVNGSAGIAVGMATNIPP 246 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLD----IVQGPDYPTEAEIITSRAEIRKIYENGRGS 238 HNLREVA A L+ + T +LL+ ++GPD+P+ A I+ + I Y GRGS Sbjct: 247 HNLREVADAVQWLLKNHEATKPELLEACLQRIKGPDFPSGATIV-GTSGIEDAYRTGRGS 305 Query: 239 VRMRAVWKKED----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENP 294 + RAV E+ ++V++ LP+QV+ + +IA ++ K+ + D+ DE+ Sbjct: 306 ITQRAVVSTEEINGRMSLVVTELPYQVNPDTLARKIAEMVKLGKIQGIADITDETSGRTG 365 Query: 295 TRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFR 354 RLVI + + V V+N+L+ T L++++ N+ + +G P ++ + EW + Sbjct: 366 QRLVITLKRDAV-AKVVLNNLYKHTQLQENFSANMLALA-NGVPRTLSIDSFVREWTKHQ 423 Query: 355 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTE 411 D + RR +RL K +++HI G L A +DEVI +IR DE + LM + E Sbjct: 424 IDVIVRRTKFRLRKAEEQIHIFRGYLKALDALDEVIALIRRSPDVDEARTGLMDLLEIDE 483 Query: 412 TQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQA 471 QA AIL ++LR LA LE KI E L+ ++ ILA ++ +++ +EL Sbjct: 484 IQANAILAMQLRRLAALERQKIIEEHDRLQALIEEYTAILADPQRQRDIVSEELAEIVDR 543 Query: 472 YGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GL 523 +GDDRR+ + A M D++P E + + +++ G+V+ + A G Sbjct: 544 FGDDRRTEIL--PFAGDMEMEDLIPEEDMVVTITRGGYVKRTREDQYRAQKRGGKGVRGA 601 Query: 524 NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGAT 581 + + D + +++ ++F + GR Y LP A +G+ + + P Sbjct: 602 SLREDDVVEHFFTTTTHRWLLFFTNQGRVYRAKGYELPEAPRDAKGQHVANLMAFQPDEN 661 Query: 582 VDHMLM---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE--------NAHV 630 + +L D Q L++A+++G + G I L + V Sbjct: 662 IASVLAIDSYEDAQHLVLATESGLVKKTPMPAFDSSRTGGIIAINLRDIDGPEGPQPDRV 721 Query: 631 MPPVVIEDASDMLLAITQAGRMLMFPVSD--LPQLSKG-KGNKIINIPSAEAARGEDGLA 687 + + ++ D +L +++ G+ + FP D L + G + +D L Sbjct: 722 ISARAV-NSDDEILLVSRNGQSVRFPADDGTLRPTGRATSGVTGMKFR------HQDTLL 774 Query: 688 QLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASS 747 + V+ P S + K + ++ GR G +R + D Sbjct: 775 AMDVIRPDSFVITVTDGGFAKRTTVDEYRLQ---GRGGLGIRVAKLPDDRGHLVGAAVVE 831 Query: 748 GDSE 751 E Sbjct: 832 ETDE 835 Score = 76.9 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 80/222 (36%), Gaps = 22/222 (9%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP------GLNYKAGD---- 529 Q E ++ D ++ ++ G V+ D+ +N + D Sbjct: 656 FQPDENIASVLAIDSYEDAQHLVLATESGLVKKTPMPAFDSSRTGGIIAINLRDIDGPEG 715 Query: 530 ----SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVD 583 +A S+ ++ V G+S + R G +G + T+ Sbjct: 716 PQPDRVISARAVNSDDEILLVSRNGQSVRFPADD-GTLRPTGRATSGVTGMKFRHQDTLL 774 Query: 584 HMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAG--KALITLPEN-AHVMPPVVIEDAS 640 M + D ++ +D G+ T ++ + R G + LP++ H++ V+ + + Sbjct: 775 AMDVIRPDSFVITVTDGGFAKRTTVDEYRLQGRGGLGIRVAKLPDDRGHLVGAAVV-EET 833 Query: 641 DMLLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAAR 681 D LL + + GR++ V+++P + G + Sbjct: 834 DELLVVMERGRVVRSKVAEVPAKGRTTMGVVFAKPDKGDRIL 875 >UniRef50_C6X523 DNA gyrase subunit A n=20 Tax=Bacteria RepID=C6X523_FLAB3 Length = 884 Score = 784 bits (2024), Expect = 0.0, Method: Composition-based stats. Identities = 235/778 (30%), Positives = 402/778 (51%), Gaps = 44/778 (5%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 + + + + +++Y++YSM VI+ RALP + DGLKPV RR++Y M L + ++ K Sbjct: 5 GERLIPINIVDEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMYGLNVFSNRKHL 64 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VGDVLGKYHPHGDS+ Y+AMV MAQP+S RYP VDGQGN+G+ D AAMRYT Sbjct: 65 KSARIVGDVLGKYHPHGDSSVYDAMVRMAQPWSLRYPQVDGQGNFGSMDG-DPPAAMRYT 123 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E++L K S+ +L++L + T D+ NFD ++ EP ++P ++P +L+NGT+GIAVGMAT++ Sbjct: 124 EAKLKKISDEILADLDKDTVDFQNNFDDSMTEPTVMPTKIPTLLVNGTSGIAVGMATNMA 183 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNL E A +A ID + T+D+L+ + PD+PT II +R + GRG + + Sbjct: 184 PHNLSESIDAIVAYIDNKEITIDELMKHIIAPDFPTGG-IIYGYDGVRDAFHTGRGRIVL 242 Query: 242 RAVWKKED----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 RA E+ A++++ +P+QV+ A ++ + A ++++K+P + ++RDESD + + Sbjct: 243 RAKINFEEVGNRSAIIVTEIPYQVNKAEMIARTAELVKDEKIPGIYEIRDESDRQGLRIV 302 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 + + + V+N L+ T L+ S+ +N N+ + GRP NL I+ ++ R + Sbjct: 303 YEL--KHDAIPNVVLNMLYKYTSLQTSFSVN-NIALVKGRPEQLNLKNIIHHFVDHRHEV 359 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAF---LNIDEVIEIIRNED---EPKPALMSRFGLTE 411 V RR + L+K +R HILEG + ++D+ I IIR+ E K LM F L++ Sbjct: 360 VIRRTEFELKKAKERAHILEGFMKVIGTQDDLDKAIAIIRHSSNPAEAKDGLMKEFDLSD 419 Query: 412 TQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQA 471 QA+AIL+L+L L +E KIR E E+ + ILA+E + ++K EL + Sbjct: 420 LQAQAILDLRLARLTGMELDKIRAEYDEIMNLIRDFEDILANESRRFEIIKAELIEMKEK 479 Query: 472 YGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN------- 524 YGD+RRS + MS D++P E V + +S G+++ + Sbjct: 480 YGDERRSEIDYSG--GEMSIEDLIPDEKVVLTISHAGYIKRTSLSEYKVQTRGGVGNRAA 537 Query: 525 -YKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGAT 581 + D + V ++Q ++F G+ + + +P +G + + + P Sbjct: 538 TTRDEDFLEYIVAATNHQYMLFFTEKGKCFWLRVFEIPEGSKISKGRAVQNLINIEPDDK 597 Query: 582 VDHMLMESDDQ--------KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPP 633 + + +D + ++M + G + G I + +N ++ Sbjct: 598 IKAYIRTNDLKDAEYINQMNVVMVTKNGTIKKTSLEAYSRPRTNGVNAIEIRDNDQLLGA 657 Query: 634 VVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVL 692 + ++ T+ G+ + FP + +G G + I++ + G + + Sbjct: 658 RL-TSGDSEIMIATKNGKCIRFPEEKARAVGRGSIGVRGISLEDDDEVIGMIVVNDV--- 713 Query: 693 PPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDS 750 T+ + K K E +VT RG +G + L ++ + + + Sbjct: 714 -ENETVLVVSEKGYGKRTAVEDYRVT-NRGGKGVI--TLNITEKTGNLIAIQNVTDED 767 Score = 98.5 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 83/220 (37%), Gaps = 15/220 (6%) Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFK 532 ++ + + + + +++++ G ++ + + D Sbjct: 597 KIKAYIRTNDLKDAEYINQMN-VVMVTKNGTIKKTSLEAYSRPRTNGVNAIEIRDNDQLL 655 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESD-- 590 A + ++ G+ A G+G ++L V M++ +D Sbjct: 656 GARLTSGDSEIMIATKNGKCIRFP-EEKARAVGRGSIGVRGISLEDDDEVIGMIVVNDVE 714 Query: 591 DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAH---VMPPVVIEDASDMLLAIT 647 ++ +L+ S+ GYG D NR GK +ITL ++ + D D L+ I Sbjct: 715 NETVLVVSEKGYGKRTAVEDYRVTNRGGKGVITLNITEKTGNLIAIQNVTD-EDGLMIIN 773 Query: 648 QAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGL 686 ++G + ++++ + + +G K+IN+ ++ + Sbjct: 774 KSGVAIRMSMNEMRVMGRNTQGVKVINLKGNDSIAAIAKV 813 >UniRef50_B0MRF5 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MRF5_9FIRM Length = 878 Score = 781 bits (2017), Expect = 0.0, Method: Composition-based stats. Identities = 230/797 (28%), Positives = 403/797 (50%), Gaps = 63/797 (7%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 ++ ++ + + ++L YSM V++ RALP + DG+KPV RRI+Y M+E +S ++ Sbjct: 12 TEKLIQVDIEKEMRESFLQYSMAVLVSRALPDVRDGMKPVHRRIIYTMNEADNTSSKPYR 71 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K A TVG+VLGKYHPHGD++ Y+A+V +AQ FS RYPL+DG GN+G+ D AA RYT Sbjct: 72 KCAYTVGEVLGKYHPHGDASVYDALVRLAQDFSMRYPLIDGHGNFGSVDG-DPPAAYRYT 130 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+R++K + LL ++ + T DW N+D L EP +LP + PN+L+NG+ GIAVGMAT+IP Sbjct: 131 EARMAKIASELLKDIKKDTIDWGKNYDDKLDEPTVLPVKFPNLLVNGSVGIAVGMATNIP 190 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNL EV A +A +D P+ +++++L ++GPD+PT II + IR Y GRG + + Sbjct: 191 PHNLNEVCDAIVARMDNPECSIEEILQYIKGPDFPTGG-IIMGYSGIRSAYYTGRGKITL 249 Query: 242 RAVWKKEDG----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 R + + ++++ +P+ V+ +++LE MR+K++ + +LRDESD + + Sbjct: 250 RGKAEIVEEGNHSRIIVTEIPYMVNKSKLLETTGQLMRDKRIEGISNLRDESDKDGMRIV 309 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 + R V+ V+N L++ T L+ + + + + ++G P LLEIL ++ F++ Sbjct: 310 YELKR--DVNAQVVLNKLYSFTQLQDTVGVIM-IALVNGEPKQLTLLEILDNYIAFQKQI 366 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRF------- 407 + RR + L+K +R HIL+G L+A NIDEVI I+R+ E K LM RF Sbjct: 367 ITRRTAFDLKKARERAHILQGFLLAIDNIDEVISILRSSKSVQEGKERLMERFKEDDLAK 426 Query: 408 -------------------GLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQ 448 GL+E QA+AI++++L L LE K+ E +E+ ++ + Sbjct: 427 LLQRAMGENYKDVHFEHEIGLSEEQADAIVQMRLGQLTGLERDKVISELAEIMEKINDFL 486 Query: 449 GILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMG 508 IL+S+ ++ ++K+E+ A + YGD+RR+ ++ + + D++P E + + +G Sbjct: 487 DILSSDERVKEIIKEEITAIKEKYGDERRTAIEPV--SGEVDIEDLIPEEECVLTYTNIG 544 Query: 509 WVRS--------AKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITL 560 +++ K G+ + D + ++ ++F+ + G Y + + Sbjct: 545 YIKRQPVDVYNLQKRGGKGVSGMKQREEDFVEDMFISSTHDNILFITNYGNMYKLKCYEV 604 Query: 561 PSAR--GQGEPLTGKLTLPPGATVDHMLMESD---DQKLLMASDAGYGFVCTFNDLVARN 615 P +G + L L G + M+ SD ++ + + G D Sbjct: 605 PEGSKQSRGTNIVNLLQLDEGERIAAMMKTSDFAENKYFICVTKYGKIKRTPLYDFRNVR 664 Query: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINI 674 + G ITL E + + + ++ T G + F + + + G + I + Sbjct: 665 KNGLRAITLAEGDE-IAAAHLTEGDSSIIVATHLGMAIHFSEDKIRSMGRLAAGVRAIKL 723 Query: 675 PSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRI 734 + G V + K +L ++ R G ++ + Sbjct: 724 REDDYIVG-----AAKVYSDDMRILTVTDKGYGRLSALSDYRMQ---NRGGNGLKNYKIR 775 Query: 735 DRVEIDSPRRASSGDSE 751 D R+ D + Sbjct: 776 DDRGYVCGIRSIQADDD 792 Score = 82.3 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 78/231 (33%), Gaps = 15/231 (6%) Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFK 532 L E E AM + I +++ G ++ +D + GD Sbjct: 621 QLDEGERIAAMMKTSDFAENKYFICVTKYGKIKRTPLYDFRNVRKNGLRAITLAEGDEIA 680 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVD-HMLMES 589 AA + + ++ G + + R G G + L + + S Sbjct: 681 AAHLTEGDSSIIVATHLGMAIHFSEDKI---RSMGRLAAGVRAIKLREDDYIVGAAKVYS 737 Query: 590 DDQKLLMASDAGYGFVCTFNDLVARNR--AGKALITLPENAHVMPPVVIEDASDMLLAIT 647 DD ++L +D GYG + +D +NR G + ++ + + A D ++ I+ Sbjct: 738 DDMRILTVTDKGYGRLSALSDYRMQNRGGNGLKNYKIRDDRGYVCGIRSIQADDDVILIS 797 Query: 648 QAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQST 697 G ++ +DL + + G +++ + + + Sbjct: 798 TDGVIIRIRANDLRVMRRTGLGVRVMKLSDEDRVVTFTRTEHDETADIEEV 848 Score = 51.8 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 60/196 (30%), Gaps = 28/196 (14%) Query: 471 AYGDDRRSPLQER-------------EEAKAMSEHDMLPSEPVTIVLSQMG--------W 509 YG +R+PL + E ++ + + IV + +G Sbjct: 648 KYGKIKRTPLYDFRNVRKNGLRAITLAEGDEIAAAHLTEGDSSIIVATHLGMAIHFSEDK 707 Query: 510 VRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQ-PVVFVDSTG--RSYAIDPITLPSARGQ 566 +RS + + D A K S+ ++ V G R A+ + + G Sbjct: 708 IRSMGRLAAGVRAIKLREDDYIVGAAKVYSDDMRILTVTDKGYGRLSALSDYRMQNRGGN 767 Query: 567 GEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGK--ALITL 624 G L V + D +++ S G NDL R G ++ L Sbjct: 768 G--LKNYKIRDDRGYVCGIRSIQADDDVILISTDGVIIRIRANDLRVMRRTGLGVRVMKL 825 Query: 625 PENAHVMPPVVIEDAS 640 + V+ E Sbjct: 826 SDEDRVVTFTRTEHDE 841 >UniRef50_A0L827 DNA topoisomerase IV subunit A n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L827_MAGSM Length = 754 Score = 781 bits (2016), Expect = 0.0, Method: Composition-based stats. Identities = 292/737 (39%), Positives = 449/737 (60%), Gaps = 21/737 (2%) Query: 1 MSDMAERL---ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNAS 57 MS+ E++ L E E+ YL Y++ I+ R+LP + DGLKPV RRI++AM L L+ + Sbjct: 1 MSNTFEQIDPCNLREELESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALRLDPN 60 Query: 58 AKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAA 117 + +KKSAR VGDV+GKYHPHGD A Y+AMV +AQ F+ RYPLVDGQGN+G D S AA Sbjct: 61 SPYKKSARVVGDVIGKYHPHGDQAAYDAMVRLAQEFAVRYPLVDGQGNFGNIDG-DSAAA 119 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 MRYTE+RL+ ++ LL +L T D++P +DG+++EP +LPAR PN+L NG++GIAVGM+ Sbjct: 120 MRYTEARLTSVAKALLEDLEMDTVDFMPTYDGSMEEPVVLPARFPNLLANGSSGIAVGMS 179 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T++PPHN+ E+ A + LI +P ++++L+ + PD+PT ++ AE ++Y GRG Sbjct: 180 TNVPPHNVGEILDACLLLISKPNCSIEELMQHLPAPDFPTGGILMADHAERLEVYSEGRG 239 Query: 238 SVRMRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHE 292 S+R+RA W ED +V++ +P+QV +R++E+IA + ++K P + ++RDESD Sbjct: 240 SLRLRARWAVEDLGRGLWQIVVTEIPYQVQKSRLIERIAQLVIDRKCPFLTNVRDESDEN 299 Query: 293 NPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLV 352 R+V+ PR+ +D + +M+ LF +DLE NLN+I RP V +L IL WL Sbjct: 300 --LRIVLEPRARTLDPELIMHFLFKHSDLESRASFNLNVIVGGHRPEVLDLKGILRHWLD 357 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTET 412 R RR +Y L+K+ +RLH+L+ L+ LNIDEVIEII+ D+P P LM+RF L E Sbjct: 358 HRFVVHTRRASYELKKIRERLHLLQAFLIVHLNIDEVIEIIKKNDDPAPVLMARFSLDEI 417 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QAEAIL ++LR+L KLEEMKIR E EL+ D L+ +LA ++ M ++ EL+A + + Sbjct: 418 QAEAILNMRLRNLRKLEEMKIRKEMEELQARADLLEAMLADDKIMWKAIRDELKATRKEF 477 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFK 532 D RR+ + E + D + EP++++LSQMGWV++ KGHD++ L +K D Sbjct: 478 ADVRRTEICGSVEDVHVRPEDFVEKEPISVILSQMGWVKANKGHDVNTEVLRFKGDDLLL 537 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQ 592 + +NQ V F+ +G+ + I LP+ +G GEPLT L G V L +Q Sbjct: 538 RSFPCYTNQSVSFISQSGKLFTILASNLPAGKGFGEPLTSMFDLDGGDRVLWALPVDPEQ 597 Query: 593 KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRM 652 + L+ + G GF DL+A R GK LITL + ++ + +I+++ R+ Sbjct: 598 EYLLITRLGQGFRVKGVDLIANQRKGKQLITLKSGDQPLHLHPVKGP--WVGSISRSRRL 655 Query: 653 LMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPE 712 L+FP+ P ++KGKG ++ + + ++ + + + + GK+ + Sbjct: 656 LIFPIEQFPLMAKGKGVRVQKLGA------DEVVVDVTTFTDEEGFVLDSGKKTKHVTDY 709 Query: 713 ELQKVTGERGRRGTLMR 729 + G R RG ++ Sbjct: 710 DQ--WHGNRAGRGAMLP 724 >UniRef50_C6CYI7 DNA gyrase, A subunit n=9 Tax=Bacillales RepID=C6CYI7_PAESJ Length = 817 Score = 780 bits (2014), Expect = 0.0, Method: Composition-based stats. Identities = 224/765 (29%), Positives = 388/765 (50%), Gaps = 32/765 (4%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 M + L E + + YS Y+I DRA+P + DGLKPVQRRI+YAM + + Sbjct: 3 MLEQFLPAYLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSNNTPDKPY 62 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 +KSA+TVGDV+G YHPHGDS+ YE MV MAQP+ + L+DG GNWG+ D AAMRY Sbjct: 63 RKSAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHVLIDGHGNWGSMD-DDPAAAMRY 121 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RLS + +L ++ + T + NFD T +EP +LP+R PN+L+NGT+GI+ G AT+I Sbjct: 122 TEARLSPIAMEILRDIDKRTVQFKDNFDNTTKEPVVLPSRYPNLLVNGTSGISAGFATEI 181 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPH+LRE A IA++ +P+ T+++L+ IV+GPD+PT II IR+ Y G+G + Sbjct: 182 PPHSLRETIDACIAVMARPEMTVEELMGIVKGPDFPTGG-IIMGEEGIREAYTTGKGRIY 240 Query: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 +R+ + ED + I+ +P+QV +R++ + KK+ + ++RDES Sbjct: 241 IRSKVEIEDVRGGRQQITITEIPYQVVKSRLVSAMENIRLEKKVEGISEVRDESGRNGLR 300 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 +V + + D + ++ +L TDL+ +Y N+ I ++ P + +IL+ ++ ++ Sbjct: 301 IVVELKKE--ADANGILAYLLKKTDLQVTYNFNMVAI-VNKAPQQLGIKQILNAYINHQK 357 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTET 412 + V R Y LEK +R H++EGL+ A +DEVI I+ + + L++++G +E Sbjct: 358 EVVTHRTQYELEKAEERAHVVEGLVKALNILDEVIATIKASKNRADAQNNLVAKYGFSER 417 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QA+AIL L+L L LE + E E +K+ L+ IL SE+K+ ++K EL + Y Sbjct: 418 QADAILTLQLYRLTNLEITSLEKEWKETQKKIAYLRSILESEKKLLGVIKDELTEIREKY 477 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAK-----GHDIDAPGLNYKA 527 G DRRS ++ E ++ M+ SE V + LS+ G+++ D K Sbjct: 478 GIDRRSSIRGEVEELKVNLEVMVQSEDVIVTLSEEGYMKRTSMLSFTRSGGDLQTAGVKE 537 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHM 585 GD+ + + + ++ G+ Y + +P + + G + + +P ++ + Sbjct: 538 GDAISSVYEVNTIDNLLLFTRKGQYYMLPVHQIPEFKWKDTGTAVVNIVPIPKDDSIVAI 597 Query: 586 LMESD----DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASD 641 + D L+ + + + A + E V+ + + + Sbjct: 598 IPVKDFNLPGASLVFVTKRAQVKRTELKEYMTTRSTAIAAAKVAEGDEVIRVTL-SEGTK 656 Query: 642 MLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI 700 LL +++ G + F ++ + + G + + + + + +A + + + Sbjct: 657 QLLLVSKLGMSIRFSEQEVNAMGRVAAGVRGMQLREDDELIAAEWVA-----DDEGEVLV 711 Query: 701 HVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRA 745 K + G RG +G + RV+ + Sbjct: 712 VTDLGYAKRTLLLDYPLQG-RGGKGVQTFEFKEGKRVKPNGSALV 755 >UniRef50_D1R591 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R591_9CHLA Length = 865 Score = 779 bits (2011), Expect = 0.0, Method: Composition-based stats. Identities = 237/775 (30%), Positives = 399/775 (51%), Gaps = 42/775 (5%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 +++ + + +++YL YSM VI+ RALP DGLKP QRRI+YAM +L L+ K + Sbjct: 6 NEIIVPRNVEDEMKDSYLRYSMSVIIARALPDARDGLKPSQRRILYAMRQLNLSPGGKHR 65 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K A+ GD G YHPHG+ Y +V MAQ + RYPLVDGQGN+G+ D + AAMRYT Sbjct: 66 KCAKISGDTSGDYHPHGEQVIYPTLVRMAQGWLMRYPLVDGQGNFGSVDGDQP-AAMRYT 124 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+RL+ S L+ +L + T + VPN+D T +EP + PA+ PN+L NG++GIAVGMAT+IP Sbjct: 125 EARLTHASVQLMEDLDKNTVEMVPNYDETKKEPTVFPAKFPNLLCNGSSGIAVGMATNIP 184 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNL E+ QA + ++ P ++D+++ ++ PD+PT II I++ + GRG + + Sbjct: 185 PHNLNELIQATLLVLQNPAVSIDEIMGVMPAPDFPTGG-IICGYRGIKEAFHTGRGRLLL 243 Query: 242 RAVWKKEDG-------AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENP 294 RAV + E+ +++ +P+ V+ +R++EQIA + +K + + DLRDESD + Sbjct: 244 RAVIRVEENEENPDKQRLIVDEIPYNVNKSRLIEQIADLINSKTITGIADLRDESDKDGM 303 Query: 295 TRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFR 354 L+ + R V + ++N LF +DL+ ++ N+ + G P V N+ ++++ W+ R Sbjct: 304 RILIELKRGEIV--EVILNQLFKYSDLQITFGCNMLALD-KGLPKVMNVKQLIAAWVDHR 360 Query: 355 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTE 411 + VRRR + L K R HILEG L A ++DEV+ +IR N +E + L+ RF LTE Sbjct: 361 IEVVRRRTRFELNKAEARAHILEGYLKAIQHMDEVVRVIRASNNREEARDELIQRFDLTE 420 Query: 412 TQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQA 471 QA A+L+LKL L LE KI E EL ++ D L+ +LASE + +++++EL + Sbjct: 421 RQANAVLDLKLYQLTGLEYEKINEEYRELLQKIDYLRAVLASEAMVRDIIREELLEIQKN 480 Query: 472 YGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNY------ 525 + R++ + E ++ D++ +E V I +S+ +++ Sbjct: 481 HRSGRKTQIIAAE--SEVNMEDLIANESVIITISEDDYIKRMPVDTFREQRRGGQGIAGM 538 Query: 526 ---KAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS--ARGQGEPLTGKLT-LPPG 579 + D+ K ++ ++ + GR Y + +P + +G+PL L + P Sbjct: 539 HLKREEDAIKGLYVASTHDYLLIFTNLGRCYWLKVWQIPETGRKSKGKPLINLLEDIRPD 598 Query: 580 ATVDHMLM---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVI 636 + +L +LMA+ G ++ R G + + E V+ ++ Sbjct: 599 EKIATVLRVSNFEQQAYILMATKKGIVKKTELSEFSHPRRKGIWALDIVEGDEVVTARLV 658 Query: 637 EDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQ 695 D S ++ T G + F + + + +G K + + D + + Sbjct: 659 SD-SQQIMLFTYHGMAVRFDQGKVRPMGRTARGVKGVTLKDD-----TDYVVGCEAVNGT 712 Query: 696 STLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDS 750 T+ I K E + T R G +R + +R + + Sbjct: 713 ETILIVCENGFGKRSNVEDFRQT---NRGGVGVRSIITSERNGNVVGALCVTDED 764 Score = 85.0 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 77/230 (33%), Gaps = 15/230 (6%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKA 533 ++ E+ + + ++ ++ G V+ + + L+ GD Sbjct: 595 IRPDEKIATVLRVSNFEQQAYILMATKKGIVKKTELSEFSHPRRKGIWALDIVEGDEVVT 654 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITL--PSARGQGEPLTGKLTLPPGATVDHMLMESDD 591 A +Q ++ G + D + +G V + Sbjct: 655 ARLVSDSQQIMLFTYHGMAVRFDQGKVRPMGRTARGVKGVTL--KDDTDYVVGCEAVNGT 712 Query: 592 QKLLMASDAGYGFVCTFNDLVARNRAG---KALITLPENAHVMPPVVIEDASDMLLAITQ 648 + +L+ + G+G D NR G +++IT N +V+ + + D M++ + Sbjct: 713 ETILIVCENGFGKRSNVEDFRQTNRGGVGVRSIITSERNGNVVGALCVTDEDGMVMM-SA 771 Query: 649 AGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQST 697 G+ + + DL + + +G K+ N+ + L + Sbjct: 772 QGQTVRITMKDLRVMGRNTQGVKLANLKEGDYLVAIQKLEVSDDVDNAKV 821 >UniRef50_A6DH72 DNA gyrase subunit A n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DH72_9BACT Length = 859 Score = 778 bits (2009), Expect = 0.0, Method: Composition-based stats. Identities = 239/770 (31%), Positives = 389/770 (50%), Gaps = 39/770 (5%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + + +AYL YSM V + RA+P + DGLKP RR+++AM +L L + + K Sbjct: 10 TVTPQGIEKLLSDAYLQYSMSVNVGRAIPDVRDGLKPGMRRVLFAMDKLNLRKGSSYMKC 69 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VGDV+GKYHPHGD + Y+ MV MAQ FS R L+DGQGN+G+ D S AA RYTE Sbjct: 70 ARVVGDVIGKYHPHGDGSVYDTMVRMAQDFSMRGMLIDGQGNFGSIDG-DSAAAYRYTEC 128 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 R+ + +E LL++L + T D P FDG+ EP +LPAR PN+L+NGTTGI VGMAT IPPH Sbjct: 129 RMERLAEELLTDLDKNTVDMQPTFDGSQNEPTVLPARYPNLLVNGTTGIGVGMATSIPPH 188 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL EV A +AL+DQP T+++++ + GPD+PT I IR++YE GRG V +R Sbjct: 189 NLGEVINATVALLDQPSITIEEMMQHLPGPDFPTAGISIGF-DGIRRLYETGRGGVHLRG 247 Query: 244 VWKKEDG----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 + + +VI+ +P+ V+ ++++IA + NK + + L DES R+V+ Sbjct: 248 RAEIIEKNGREQIVITEIPYAVNKENMVKKIAELVNNKVITGISSLNDESSSRVGIRVVV 307 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 ++N + V+N L+ T L S ++ + +P NL ++L +L R + + Sbjct: 308 GIKTNAM-ATVVINQLYKHTQLAVSIGCQFLVVD-NKQPKTLNLKQLLQAYLDHRLEVIT 365 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEA 416 RR+ + LEK +R HILEGLL A +IDEVI+IIR N ++ L RF L+ QA+A Sbjct: 366 RRIKFELEKAERRAHILEGLLKAVDHIDEVIKIIRASTNREDAHNQLKERFELSNEQAKA 425 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDR 476 IL+++L L L ++ E EL K + +LA+ + +++K+EL + D+R Sbjct: 426 ILDMRLSQLTGLAIDELTAEYEELMKRIAHYRELLANRQMRLDVVKEELIEVRDKFADER 485 Query: 477 RSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GLNYKAG 528 R+ ++ E + ++ D++ TI +S G+++ G+ K Sbjct: 486 RTEMRPGE--RDINYEDLIARASATITISNEGYIKRVPTEIYRTQNRGGKGVKGMETKDD 543 Query: 529 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHML 586 D K ++ ++F + GR + + +P A +G+ + L G V M+ Sbjct: 544 DFVKQLTTACTHDYIMFFTNFGRMHWLKVYDIPEATRVSKGKAMVNLLEFEKGEYVRAMI 603 Query: 587 ME----SDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM 642 +D+ ++M++ G + I L E+ ++ + D + Sbjct: 604 SVDKVDDEDRFIMMSTRNGVVKKTALAAFKNMRKKPIKAIVLDEDDDLIEA-KLTDGNKK 662 Query: 643 LLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 ++ T+ G F SD + +G + I + D + + ++ + + Sbjct: 663 IILSTREGIACHFKESDCRTQGRVTRGCRGIRLSE------SDQVVAMSIVEESEDILVV 716 Query: 702 VGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K K + ++T +RG +G L+ D E Sbjct: 717 TAKGMGKRSCVDDYRLT-KRGAKGVRNIKLKEGD---YVVEVMMIEDTDE 762 Score = 85.4 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 77/226 (34%), Gaps = 17/226 (7%) Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLS-QMGWVRSAKGHDI------DAPGLNYKAGDSF 531 ++ E +AM D + E I++S + G V+ + D Sbjct: 592 EFEKGEYVRAMISVDKVDDEDRFIMMSTRNGVVKKTALAAFKNMRKKPIKAIVLDEDDDL 651 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLMES 589 A N+ ++ G + R QG G + L V M + Sbjct: 652 IEAKLTDGNKKIILSTREGIACHFKESD---CRTQGRVTRGCRGIRLSESDQVVAMSIVE 708 Query: 590 DDQKLLMASDAGYGFVCTFNDLVARNR--AGKALITLPENAHVMPPVVIEDASDMLLAIT 647 + + +L+ + G G +D R G I L E +V+ ++IED +D ++ T Sbjct: 709 ESEDILVVTAKGMGKRSCVDDYRLTKRGAKGVRNIKLKEGDYVVEVMMIED-TDEIIMTT 767 Query: 648 QAGRMLMFPVSDLPQLSKGK-GNKIINIPSA-EAARGEDGLAQLYV 691 G M+ + L + G I+ A + + ++ Sbjct: 768 MEGLMVRISAEPIRSLGRASQGVTIMKFKKASDLIISASRVVEVEA 813 >UniRef50_D1Y742 DNA gyrase, A subunit n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y742_9BACT Length = 871 Score = 777 bits (2008), Expect = 0.0, Method: Composition-based stats. Identities = 257/767 (33%), Positives = 408/767 (53%), Gaps = 34/767 (4%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 L + +YL+Y+M VI+ RALP DGLKPVQRR++Y M LG+ + +KKS Sbjct: 8 RVIPNPLVPEIKRSYLDYAMSVIVGRALPDARDGLKPVQRRVLYGMLGLGIRHNQAYKKS 67 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VG+V+GKYHPHGD++ Y+ MV +AQP++ RYPLVDGQGN+G+ D AAMRYTE+ Sbjct: 68 ARVVGEVMGKYHPHGDASIYDTMVRLAQPWNLRYPLVDGQGNFGSVDG-DGAAAMRYTEA 126 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 R ++ EL+L ++ + T DW PNFD +L+EP LP+ +PN+L+NG+TGIAVGMAT++PPH Sbjct: 127 RFAELGELMLQDIDEDTVDWGPNFDESLKEPLTLPSLVPNLLVNGSTGIAVGMATNMPPH 186 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL EV A LID P+ L +L++ + GPD+PT II R I Y GRG + +R Sbjct: 187 NLGEVIDALCCLIDHPEAELGELMNYLPGPDFPTGG-IIMGREGIVDAYRTGRGKIIVRG 245 Query: 244 VWKKED----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 E+ +VVI+ +P+ V+ ++E IA ++ + V DLRDESD + ++ Sbjct: 246 RCVVEEGKRRTSVVITEIPYMVNKTTLIEGIAKCVQEHTIDGVSDLRDESDRQGLRIVLD 305 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 + R D + V L+ T ++ ++ + +N+ +D RP L +L +L +RRD VR Sbjct: 306 LNRDG--DPELVQRQLYNRTLMQSTFGV-INLTLVDQRPVELGLKSMLEVFLDYRRDVVR 362 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAEA 416 RR +RL K +R HI+EGL A IDEVI IIR + A L + +E QA+A Sbjct: 363 RRTAFRLAKAQEREHIIEGLCRALDMIDEVIRIIRGAQTAEEASHGLTEQLQFSEKQAQA 422 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDR 476 IL+++L+ L LE K+ E ++L + + Q ILA + ++ +++ EL +GD R Sbjct: 423 ILDMRLQRLTGLERDKLTAEMAQLLADIARYQEILADAKTLDGVIRDELAELRHKFGDKR 482 Query: 477 RSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK--------AG 528 R+ +Q E+ + S D++P E + I LS+ G++R + D + K Sbjct: 483 RTEIQLHVESTSDSYEDLMPEENIVITLSKDGYLRRSLLKDYNVQNRGGKGRRGANLHEE 542 Query: 529 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR-GQGEPLTGKLTLPPGATVDHMLM 587 D V ++ V+ S GR +AI +P + G+G + ++L G TV +L Sbjct: 543 DQVAGMVVTTTHNDVLLFTSRGRVFAIKGHMVPETKSGKGRKVEQFISLSEGETVVEILG 602 Query: 588 ESDD--QKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLA 645 D +++ + G ++L RAG+ ++TL + + + + D L Sbjct: 603 RFPDNCSTVVLITRRGIAKRMDKSELQNLTRAGRQIMTLDDGDD-IARIRCTNGLDDLFL 661 Query: 646 ITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGK 704 ++ GR L ++ + + +G K + + + + +A S + + + Sbjct: 662 VSAMGRGLRISEDEIRTMGRSARGVKAMKLGKDDEIISCEVIAG------DSRILLVSQR 715 Query: 705 RKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K+ + V R G R ++ DR + D E Sbjct: 716 GIGKITSYDEFSVH-HRATGGQ--RAMRIGDRTGRLAVANTVFPDDE 759 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 76/238 (31%), Gaps = 17/238 (7%) Query: 473 GDDRRSP---LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGL 523 G R+ E + +++++ G + ++ + Sbjct: 580 GKGRKVEQFISLSEGETVVEILGRFPDNCSTVVLITRRGIAKRMDKSELQNLTRAGRQIM 639 Query: 524 NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGAT 581 GD + V + GR I + R G G + L Sbjct: 640 TLDDGDDIARIRCTNGLDDLFLVSAMGRGLRISEDEI---RTMGRSARGVKAMKLGKDDE 696 Query: 582 VDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNR--AGKALITLPENAHVMPPVVIEDA 639 + + + D ++L+ S G G + ++++ +R G+ + + + + Sbjct: 697 IISCEVIAGDSRILLVSQRGIGKITSYDEFSVHHRATGGQRAMRIGDRTGRLAVANTVFP 756 Query: 640 SDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQS 696 D + +T G ++ V +PQL + G+ +I + + + + ++ Sbjct: 757 DDEVALMTAGGNIIRLAVDSIPQLGRDAAGSILIRPENGDEVANVSLIHKEDLVQSGG 814 >UniRef50_Q9RT53 DNA gyrase, subunit A n=2 Tax=Bacteria RepID=Q9RT53_DEIRA Length = 812 Score = 777 bits (2007), Expect = 0.0, Method: Composition-based stats. Identities = 254/772 (32%), Positives = 407/772 (52%), Gaps = 37/772 (4%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + + + + ++NY+M VI+DRALP + DG+KPVQRRI+YAM + GL ++ K KS Sbjct: 3 GIQPVDITSEVKTNFINYAMNVIVDRALPDVRDGMKPVQRRIMYAMLQEGLASNVKHAKS 62 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 A VG+V+ +YHPHGDS+ Y+AMV + Q ++ RY LVD QGN+G+ D AAMRYTE+ Sbjct: 63 ASVVGEVMKRYHPHGDSSIYDAMVRLGQWWNMRYTLVDPQGNFGSMDG-DMAAAMRYTEA 121 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 R++K +E +L++L + T D PN+D T EP +LP+ +PN+L+NG +GIAVGMAT+IPPH Sbjct: 122 RMTKVAEEILADLEKETVDLKPNYDETTTEPTVLPSAVPNLLINGASGIAVGMATNIPPH 181 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL E++ +ALID P TLD+++ VQGPD+PT I ++ IR+ Y G +++R Sbjct: 182 NLTEISNGLLALIDNPAITLDEMMTHVQGPDFPTGGRI--AKVGIREAYATGHAGLKVRG 239 Query: 244 VWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + E+ ++IS +P+Q++ +L+ I+A + K+P + LRDESD + P R+V Sbjct: 240 KARIEEGKNGRTQIIISEIPYQLNKTNLLQTISAMYKAGKIPDIGALRDESDRKEPVRIV 299 Query: 299 IVPRSNRVDM-DQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 I + + M V+N L+ T L+ SY + +N+ ++G P V L++ + +L RRD Sbjct: 300 IELKRSAAGMGTLVLNQLYKYTQLQSSYTV-MNLSIVNGEPRVLPLIDTMRYFLDHRRDV 358 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQA 414 V RR Y L K +R H+LEGLL A +IDEVI +IR E + LM+RFGL+E QA Sbjct: 359 VTRRTVYDLRKAKERAHVLEGLLKALDHIDEVISLIRASNTGAEARDGLMARFGLSEIQA 418 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 +AIL+++L+ L LE K++GE EL+K +L+ IL E+ + +KKE++ YGD Sbjct: 419 QAILDMRLQRLVGLEREKLQGEYDELQKTITRLESILGDEKLLWREIKKEIRDIRDRYGD 478 Query: 475 DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GLNYK 526 RRS + E EE +++ D++ E + I +++ G+V+ G + Sbjct: 479 ARRSVITELEE--DINKEDLIAVEDMVITMTRAGYVKRTNLTAYREQKRGGRGSSGGKLR 536 Query: 527 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLT-LPPGATVD 583 D+ G ++ ++F GR + LP A +G + L L + Sbjct: 537 EEDANTGVFVGSTHDYLLFFTDQGRVFHEKIYDLPEAGRDAKGTHIRNLLPGLRDDENIA 596 Query: 584 HMLM---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDAS 640 +L + A+ +G D AG I L ++ + +D Sbjct: 597 SVLSVSGFDQPGSFIFATKSGVIKKSLITDYANITSAGLIAINLQPGDELIGVDIQQDGD 656 Query: 641 DMLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT 699 D ++ T+ G+ + F + + + +G I + + + + L Sbjct: 657 D-VVLATKNGQAMRFEATLVRDTGRATQGVIGIRLREGDEVVSMALVPG---NDEEGELL 712 Query: 700 IHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K +GR G + L D+ +G+ E Sbjct: 713 AISECGLGKRTKVSDYP---SKGRGGLGVITLDVTDKTGKLVTLAHVAGNEE 761 Score = 85.4 bits (210), Expect = 9e-15, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 74/198 (37%), Gaps = 15/198 (7%) Query: 502 IVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAI 555 I ++ G ++ + D +N + GD + VV G++ Sbjct: 611 IFATKSGVIKKSLITDYANITSAGLIAINLQPGDELIGVDIQQDGDDVVLATKNGQAMRF 670 Query: 556 DPITLPSARGQGEPLTGKLTLPPGATVDHMLME---SDDQKLLMASDAGYGFVCTFNDLV 612 + + G+ + L G V M + ++ +LL S+ G G +D Sbjct: 671 EATLVRD-TGRATQGVIGIRLREGDEVVSMALVPGNDEEGELLAISECGLGKRTKVSDYP 729 Query: 613 ARNRAGKALITLPENAH---VMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKG 668 ++ R G +ITL ++ + ++ L+ +T+ G ++ V ++ + +G Sbjct: 730 SKGRGGLGVITLDVTDKTGKLVTLAHVA-GNEELMVLTEKGTVIRTRVEEVRVTGRNAQG 788 Query: 669 NKIINIPSAEAARGEDGL 686 K+INI + + Sbjct: 789 VKVINIGDKDRVIDAFPI 806 >UniRef50_B9ZEE7 DNA gyrase, A subunit n=1 Tax=Natrialba magadii ATCC 43099 RepID=B9ZEE7_NATMA Length = 861 Score = 774 bits (1998), Expect = 0.0, Method: Composition-based stats. Identities = 252/771 (32%), Positives = 411/771 (53%), Gaps = 42/771 (5%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 E + + + E +Y++Y+M VI RALP + DGLKPV RRI+YAM E+G+ + + +KS+ Sbjct: 31 VENVRIEDEMEQSYIDYAMSVIAGRALPDVRDGLKPVHRRILYAMHEMGVTSRSSHRKSS 90 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 VG+ +G YHPHGDSA Y+ +V MAQ FS RYPLVDGQGN+G+ D AA RYTE+R Sbjct: 91 SIVGETMGDYHPHGDSAIYDTLVRMAQDFSMRYPLVDGQGNFGSMDG-DPAAAPRYTEAR 149 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 ++ SE LL ++ + T D+ N+D LQEP +LP+ PN+L+NG++GIAVGM+T+IPPHN Sbjct: 150 MAAVSEELLEDIDKDTVDFSSNYDDRLQEPDVLPSAFPNLLVNGSSGIAVGMSTNIPPHN 209 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 L EV A I LID P T++ L++ V+GPD+PT A I+ R I Y+ GRG +R+RA Sbjct: 210 LGEVIDATIELIDDPDATVEDLMEHVKGPDFPTGANIV-GRDAIYSAYKTGRGRIRVRAE 268 Query: 245 WKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 ++ E+ +VI+ LP+Q + AR++E+IA + + + DLRDESD + +V Sbjct: 269 FEVEEWKNGRERIVITELPYQENKARLVERIAEDVNEGDIEGISDLRDESDRDGVRIVVE 328 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 R +++ V N L LEK++ + +N+ +DG+P V +L E L E++ RR+ VR Sbjct: 329 CKR--GANVEVVKNKLLEN-HLEKTFGV-INLALVDGQPQVLSLKETLEEYIAHRREVVR 384 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQAEA 416 RR Y L + R HILEG L A N ++V+++IRN D+ K AL + + QA Sbjct: 385 RRSEYDLAEAEDRAHILEGRLKAVENAEDVVDLIRNSETRDDAKAALQEAYDFSAEQATH 444 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDR 476 I+ ++L L +E +I E +++ E ++L IL SE+++ ++K EL Y DDR Sbjct: 445 IVRMQLGSLTSMEAAEIEDEYEDVQAEIERLTSILESEQELLAVIKDELSEIKDEYDDDR 504 Query: 477 RSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN--------YKAG 528 R+ + E+ ++ D++P E V +V+++ +V+ D G K Sbjct: 505 RTSII--EDQGTVTHEDLIPEEEVFVVMTEDDYVKRMPISQFDPQGRGGKGIIGADVKED 562 Query: 529 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS--ARGQGEPLTGKLTLPPGATVDHML 586 D + ++ ++ + G+ Y + +P +G+ L L PG + ++ Sbjct: 563 DRVATVFRANTHDYLLCFTNQGKVYQLKTYEIPEMGRTARGKSAVNILDLDPGEDITAIV 622 Query: 587 MES---DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDML 643 DD+ + MA+ GY ++ G L E ++ + D + L Sbjct: 623 DTDAFGDDEFVTMATRHGYVKRTAGSEFDNIRSTGIIAADLQEGDELVDVE-VTDGTKDL 681 Query: 644 LAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPP--QSTLTI 700 + ++ G + F ++ + + +G I++ +G+D +A L + L Sbjct: 682 VIASENGMTIRFDEDEVRAMGRNARGVNGIDL------QGDDAVAGLVATDEGDEQDLLT 735 Query: 701 HVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K P + R G + ++ +R + +A S D + Sbjct: 736 VTQNGYGKRTPLSEYRTQS---RYGKGLIDIKTGERNGPVTTAKAVSADDQ 783 Score = 96.9 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 81/224 (36%), Gaps = 16/224 (7%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP------GLNYKAGDSFKA 533 L E+ A+ + D + + ++ G+V+ G + D + + GD Sbjct: 612 LDPGEDITAIVDTDAFGDDEFVTMATRHGYVKRTAGSEFDNIRSTGIIAADLQEGDELVD 671 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPL--TGKLTLPPGATVDHMLMES-- 589 + +V G + D + R G + L V ++ Sbjct: 672 VEVTDGTKDLVIASENGMTIRFDEDEV---RAMGRNARGVNGIDLQGDDAVAGLVATDEG 728 Query: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAH--VMPPVVIEDASDMLLAIT 647 D+Q LL + GYG ++ ++R GK LI + + A D L+ ++ Sbjct: 729 DEQDLLTVTQNGYGKRTPLSEYRTQSRYGKGLIDIKTGERNGPVTTAKAVSADDQLVMMS 788 Query: 648 QAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLY 690 + G+++ V ++ + + G ++++ +A D + Sbjct: 789 ERGQIVRTRVDEISTVGRNTMGVIVMDVDDGDAVASVDVVPAAV 832 >UniRef50_Q2S0H7 DNA gyrase, A subunit n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S0H7_SALRD Length = 910 Score = 772 bits (1995), Expect = 0.0, Method: Composition-based stats. Identities = 244/828 (29%), Positives = 392/828 (47%), Gaps = 90/828 (10%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 + + E +++Y++YSM VI+ RALP + DGLKPV RR++Y M ELGL A +K Sbjct: 5 DSRVIPINIEEEMKSSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYGMHELGLTQGANYK 64 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VG+VLGKYHPHGDS+ Y+ +V MAQ FS RYPL DGQGN+G+ D S AAMRYT Sbjct: 65 KSARIVGEVLGKYHPHGDSSVYDTLVRMAQHFSMRYPLADGQGNFGSVDG-DSAAAMRYT 123 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+R+++ +E +L+++G+ T D NFDGT++EP +LPA PN+L+NG GIAVGMAT IP Sbjct: 124 EARMTRIAEQMLTDIGKETVDTQENFDGTMEEPTVLPAAFPNMLVNGADGIAVGMATKIP 183 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNL E A +A ID P +D L+D + PD+PT II A + + Y GRG V M Sbjct: 184 PHNLGETIDATVAYIDDPDIEIDNLMDHLPAPDFPTGG-IIYGYAGVYEAYHTGRGRVVM 242 Query: 242 RAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 RA +E+ A+V++ LP+QV+ +R +E+IA ++R +++ + DLRDESD + Sbjct: 243 RAKMHEEEVRSGRDALVVTELPYQVNKSREVERIADRVRQERIEGIADLRDESDRDGLRI 302 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 ++ + + + V N ++ + L+ ++ +N+ + + GRP V L + + ++ R + Sbjct: 303 VIEL--KQGANAEIVKNQVYKHSRLQDTFGVNM-VALVGGRPQVVTLKDAIRHYVDHRHE 359 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMS-RFG---- 408 V RR Y L + R HILEGL +A ++D VI IIR+ + + L + R+ Sbjct: 360 IVVRRTEYDLAQAQDRAHILEGLTLALDHLDAVIAIIRHSPDTGTARQNLRAGRYPDALS 419 Query: 409 --------------------------------------------LTETQAEAILELKLRH 424 LTE QA AIL L+L Sbjct: 420 DDDLRTINVPLTPPGEADEEQDTVQALLGDEYEELVQQPDEGDWLTEAQANAILRLRLSR 479 Query: 425 LAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQERE 484 L LE KI GE ++ ++ + Q IL S + L+K+EL + + D+RR+ + Sbjct: 480 LTGLEREKIIGEYEDIIEQIREYQRILNSRDRRMALIKEELLTVKERFDDERRTEIDYTG 539 Query: 485 EAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNY--------KAGDSFKAAVK 536 + D++ + V + ++ G + G + D + Sbjct: 540 -GDDIIIEDLIERQHVVVTITNQGLTKRTPIDTYRTQGRGGVGMRGTGKREDDFIEHLYV 598 Query: 537 GKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLMESDD--- 591 S+ ++ G+ + + P +P +G + + + P V ++ S + Sbjct: 599 CHSHDVLLLFTDKGQCFWLRPFEIPEGGRTAKGRSIRQLIDIDPDDRVRAVISVSKENFE 658 Query: 592 -------QKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLL 644 +L A+ G G I + E ++ + + ++ Sbjct: 659 DEAFLNSHYVLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEGDQLIEASL-TGGDNTVV 717 Query: 645 AITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVG 703 + GR + F D + + +G + + +P + G + + Sbjct: 718 VASSGGRAVHFDEGDARPMGRNTRGVRGMELPGDQELVGMISVPPAM--HDDLDVLAIAE 775 Query: 704 KRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K +V GR G + L R DR + GD + Sbjct: 776 HGYGKRTALSDYRVQ---GRGGKGLITLNRTDRTGALVSIKGVLGDED 820 Score = 90.0 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 81/226 (35%), Gaps = 18/226 (7%) Query: 486 AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKS 539 +K E + + + ++ G V+ G+ GD A Sbjct: 653 SKENFEDEAFLNSHYVLAATRQGQVKKTALEAYSRPRSNGIIGIKIDEGDQLIEASLTGG 712 Query: 540 NQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLMES----DDQK 593 + VV S GR+ D AR G G + LP + M+ DD Sbjct: 713 DNTVVVASSGGRAVHFDEGD---ARPMGRNTRGVRGMELPGDQELVGMISVPPAMHDDLD 769 Query: 594 LLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIED--ASDMLLAITQAGR 651 +L ++ GYG +D + R GK LITL V I+ + L+ IT+ G Sbjct: 770 VLAIAEHGYGKRTALSDYRVQGRGGKGLITLNRTDRTGALVSIKGVLGDEDLMVITEGGI 829 Query: 652 MLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQS 696 M+ V ++ + + +G ++I++ +A +A Sbjct: 830 MIRTRVGEISTMGRNTQGVQVIDLKDGDAIADVTRVADTDEPEADD 875 >UniRef50_C0R046 DNA gyrase subunit A n=2 Tax=Brachyspira RepID=C0R046_BRAHW Length = 834 Score = 771 bits (1992), Expect = 0.0, Method: Composition-based stats. Identities = 241/770 (31%), Positives = 392/770 (50%), Gaps = 36/770 (4%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + +++ +YL Y+M VI+ RALP + DGLKPV RRI+YAM + L +KKS Sbjct: 26 RVDHISIENELRESYLTYAMSVIVSRALPDVRDGLKPVHRRILYAMYDANLTHDKPYKKS 85 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 A TVG+VL +YHPHGD+A Y MV MAQ FS RY LVDGQGN+G+ D AAMRYTE+ Sbjct: 86 AATVGEVLARYHPHGDAAVYGTMVRMAQDFSMRYLLVDGQGNFGSID-DDPPAAMRYTEA 144 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 R+++++E +L+++ + T +VPNFD + EP +LPA +P +L+NG+ GIA+GMAT++PPH Sbjct: 145 RMTRFAEEMLNDIEKETVKFVPNFDDSRTEPSVLPATVPQLLVNGSMGIAIGMATNMPPH 204 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL+EV A + ID + L+ VQGPD+PT II + I++ Y G+G +++RA Sbjct: 205 NLKEVVNAIVYYIDHQDAEIKDLMRYVQGPDFPTAG-IIYGKEGIKEAYTTGKGRIKLRA 263 Query: 244 VWKKEDGA-----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + E+ +V+ LP+ V + E+IA ++ K+ V D+RDES + RL+ Sbjct: 264 RLEVEETKRDREAIVVKELPYGVVKTTLHEKIADLVKQGKIEGVADIRDESSNRAGIRLI 323 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 I + V+N L+ TDLE ++ I +N+ ++G P V NL E++ ++ R + + Sbjct: 324 IELKKGVAT-QIVLNQLWKHTDLETTFGI-INLALVNGEPKVLNLKELIKYFVDHRVEVI 381 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQAE 415 +R Y L + + HILEGLL+A NI+EVI IIR D + LM+RF L+E QA+ Sbjct: 382 TKRTEYDLNQAKAKAHILEGLLIAQANIEEVIRIIRESENTDAARTTLMNRFKLSEKQAQ 441 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 AIL++ L+ L LE++KI E +L + + +LA K+ ++K EL+ ++ YGDD Sbjct: 442 AILDMPLKRLTALEKLKIEQELQQLREFIAYCEDLLAHPEKILAVIKDELKKISEKYGDD 501 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDA--------PGLNYKA 527 RRS + + + E D++ E V + ++ G+++ G + Sbjct: 502 RRSEIIGKTNDTEIDEEDLIHDEDVAVSITTQGFIKRVPASSYRTQGRGGVGVQGGKSQG 561 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHM 585 + + + G+++ + +P S QG+ + L L P + Sbjct: 562 EHYIEHLFVASTKDYLFIFTDRGKAFWMKVHEIPALSKISQGKSIKFILNLAPEEKITSY 621 Query: 586 LM---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM 642 Q ++M + G L + G +TL N ++ ++ D Sbjct: 622 FTVSEFDPKQSIIMVTKMGTIKKMELKHLENAKKRGILALTLENNDELVAVSPVQTGDDF 681 Query: 643 LLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 ++ T AG L + ++ + G K I++ +D + +L + Sbjct: 682 IMT-TAAGLALRITEEKIRKMGRAAAGVKGISLDD------DDICVSGNAIHKGESLIVI 734 Query: 702 VGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K + V G RG +G + ++ + E Sbjct: 735 TENGIGKRLSSKQFNVKG-RGGKGQIYIKP--DNKTGNVVSVKTVGDKDE 781 Score = 75.7 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 73/218 (33%), Gaps = 14/218 (6%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP------GLNYKAGDSFKA 533 L E+ + + I++++MG ++ + ++ L + D A Sbjct: 612 LAPEEKITSYFTVSEFDPKQSIIMVTKMGTIKKMELKHLENAKKRGILALTLENNDELVA 671 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLMESDD 591 ++ + + G + I + R G G ++L Sbjct: 672 VSPVQTGDDFIMTTAAGLALRITEEKI---RKMGRAAAGVKGISLDDDDICVSGNAIHKG 728 Query: 592 QKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIE--DASDMLLAITQA 649 + L++ ++ G G + + R GK I + + V ++ D ++ +T Sbjct: 729 ESLIVITENGIGKRLSSKQFNVKGRGGKGQIYIKPDNKTGNVVSVKTVGDKDEIMVVTTD 788 Query: 650 GRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGL 686 + +P+L + KG KI+NI + Sbjct: 789 DMTIKIKADSIPELGRNAKGVKIVNISDGARVSDLAVV 826 >UniRef50_D0LNR4 DNA gyrase, A subunit n=3 Tax=Bacteria RepID=D0LNR4_HALO1 Length = 891 Score = 770 bits (1989), Expect = 0.0, Method: Composition-based stats. Identities = 254/802 (31%), Positives = 396/802 (49%), Gaps = 67/802 (8%) Query: 1 MSD--MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASA 58 MSD +A+ + +++++Y+M VI+ RALP DGLKPV RRI++A L + Sbjct: 1 MSDIANVTPVAIEKEMRSSFMDYAMSVIISRALPDARDGLKPVHRRILFAQKGLSNYWNR 60 Query: 59 KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 118 + K AR VGDV+GKYHPHGDS+ Y+A+V MAQ FS RY LVDGQGN+G+ D AAM Sbjct: 61 PYLKCARIVGDVIGKYHPHGDSSVYDALVRMAQDFSMRYELVDGQGNFGSIDGDPP-AAM 119 Query: 119 RYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMAT 178 RYTE R+++ + LL++L + T DW PN+D EP +LP ++PN+LLNG +GIAVGMAT Sbjct: 120 RYTECRMARLASDLLADLDKETVDWQPNYDDKELEPTVLPTKVPNLLLNGASGIAVGMAT 179 Query: 179 DIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGS 238 +IPPHNL E+ A +AL++ P ++L +IV GPD+PT II R IR + GRG+ Sbjct: 180 NIPPHNLGEILDATMALMEDPDLPEEELAEIVPGPDFPTG-GIIHGRGGIRAAHTLGRGA 238 Query: 239 VRMRAV-----WKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHEN 293 V +R +KE A+V++ +P V+ +R +E A +R+K++ + D+RDESD + Sbjct: 239 VVIRGRTQFETVRKERKAIVVTEMPFMVNKSRWIETTAHLVRDKRIDGISDIRDESDRKG 298 Query: 294 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVF 353 R+V + + + V+N+LF T L+ S+ +N+ I +DGRP V +L L ++ Sbjct: 299 -IRVVFELKRD-ANEQVVLNNLFKMTALQTSFNVNMLAI-VDGRPQVLSLRSALQVFIEH 355 Query: 354 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSR---- 406 RR VRRR + L + +R I+EGL +A + ID VIEIIR DE K LMS Sbjct: 356 RRTVVRRRCLFELRQARERREIVEGLGLAVMQIDRVIEIIRTSKDTDEAKARLMSERMMG 415 Query: 407 -----------------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKE 443 L+ QA+AIL+++L L LE K+ E EL + Sbjct: 416 LDGFLERAGRPADEVEAVRTAGFVHLSARQAQAILDMRLGRLTGLEREKVEAEYRELWEI 475 Query: 444 RDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIV 503 D L+GIL + K+ ++ EL+ Y D RR+ + + + + + ++ E + + Sbjct: 476 TDYLEGILGDDVKLRGVIVDELREMRDQYADPRRTEIVD--QEGEILDEQLIKVEDMVVT 533 Query: 504 LSQMGWVRSAKGHDIDAPGLNYK--------AGDSFKAAVKGKSNQPVVFVDSTGRSYAI 555 ++ G+V+ + A G K D ++ ++ + GR Y Sbjct: 534 RTRRGYVKRTALDEYSAQGRGGKGVRGAASGDDDFVADMFVASTHDHLLMFTNIGRVYQK 593 Query: 556 DPITLPSAR--GQGEPLTGKLT-LPPGATVDHMLMES---DDQKLLMASDAGYGFVCTFN 609 LPS +G P + L P V ML DD MA+ G Sbjct: 594 KVYELPSGSRISKGRPFVNVIEALQPDEYVVGMLPVKEFTDDLSAFMATRMGTVKKTVAA 653 Query: 610 DLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKG 668 G I + + ++ + D +L +T+ G+ + F + + + +G Sbjct: 654 AFSRIRVTGIKAIGIDDGDELVEVRLTRPDMD-VLLVTKRGQSIRFQEDQVRPMGREARG 712 Query: 669 NKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLM 728 + I + +A G ++ + + K +GR G + Sbjct: 713 VRGIGLAGGDAVVGM----SVFERDCEDAILTVCENGYGKRTLLSAY---STQGRGGKGL 765 Query: 729 RGLQRIDRVEIDSPRRASSGDS 750 ++ +R S R D Sbjct: 766 ITIKTTERNGPVSGVRLVGEDD 787 Score = 84.6 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 79/221 (35%), Gaps = 16/221 (7%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSA------KGHDIDAPGLNYKAGDSFKA 533 LQ E M + + ++MG V+ + + GD Sbjct: 617 LQPDEYVVGMLPVKEFTDDLSAFMATRMGTVKKTVAAAFSRIRVTGIKAIGIDDGDELVE 676 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLMESDD 591 + + V+ V G+S + R G G + L G V M + D Sbjct: 677 VRLTRPDMDVLLVTKRGQSIRFQEDQV---RPMGREARGVRGIGLAGGDAVVGMSVFERD 733 Query: 592 --QKLLMASDAGYGFVCTFNDLVARNRAGKALITLP--ENAHVMPPVVIEDASDMLLAIT 647 +L + GYG + + R GK LIT+ E + V + D ++ I+ Sbjct: 734 CEDAILTVCENGYGKRTLLSAYSTQGRGGKGLITIKTTERNGPVSGVRLVGEDDHVIMIS 793 Query: 648 QAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGLA 687 G+++ V D+P S+ +G +++ + E + LA Sbjct: 794 STGKLIRMRVRDIPVQSRATQGVRLMRLDPGEQVASLERLA 834 >UniRef50_D1N7T7 DNA gyrase, A subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7T7_9BACT Length = 885 Score = 770 bits (1988), Expect = 0.0, Method: Composition-based stats. Identities = 235/801 (29%), Positives = 401/801 (50%), Gaps = 61/801 (7%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + ++ + + AYL YS+ V + RA+P + DGLKPV RRI+YAM +LGL S Sbjct: 4 LGTRDFQVNIEDIMHTAYLQYSLSVNVGRAIPDVRDGLKPVNRRILYAMRQLGLGKSHAT 63 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 K AR VG+V+GKYHPHGD+A Y+A+V +AQ FS R PL++GQGN+G D AA RY Sbjct: 64 VKCARVVGEVMGKYHPHGDAAIYDALVRLAQDFSMRNPLIEGQGNFGNIDG-DPAAASRY 122 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE R+ + +E LL+++ + T + +PNFD + EP++LPAR P +L+NGTTGI VGMAT I Sbjct: 123 TECRMERLAEELLADIEKDTVNMIPNFDESETEPEVLPARYPQLLVNGTTGIGVGMATSI 182 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL EV A I L+D PK T+D+L++ + GPD+PT A II R +R+ Y+ G GS++ Sbjct: 183 PPHNLGEVIDATICLLDNPKATVDELMEYLPGPDFPTGA-IIRGRYSMRQFYQTGHGSIK 241 Query: 241 MRAVWKKEDG----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 +RA + +++S +P+ + +++++IA + +K++ + LRDES R Sbjct: 242 IRAKADIIEKDGREQIIVSEIPYAICKEQLVKKIAELVNDKRITGISGLRDESSKRTGMR 301 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 +VI + + V+N LFA T LE + + ++ + RP NL+++L ++ R + Sbjct: 302 IVIEIKRGAMG-SVVLNQLFAHTMLETTIGCTMLVVDHN-RPRTMNLVQVLQAYIDHRLE 359 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQ 413 + RR + L+K R HILEGL+ A NI++V++IIR + L++RF T+ Q Sbjct: 360 VIVRRTLFELKKAQARAHILEGLMKALANINDVVQIIRESRSRQDAAANLIARFEFTQIQ 419 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 +AIL+++L L L + E EL+K + L + AS ++K EL+ + Y Sbjct: 420 VDAILDMRLHQLTGLAIETLTAEYEELKKRIEYLTALAASREMQLGVIKDELKEIREKYA 479 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GLNY 525 D RR+ + + ++ D++P I +S G+++ G+ Sbjct: 480 DPRRTEIT--IDDTDLNIADLIPRHSCVITVSNTGYIKRVPADTYRTQHRGGKGIIGMET 537 Query: 526 KAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVD 583 K D + S+ + F G Y ++ +P G+G +T + + PG + Sbjct: 538 KEEDHVEHLFNADSHDIIFFFTDRGFMYWLNVYEIPEGSRTGKGRAITNMIKVEPGEKIC 597 Query: 584 HMLME------SDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIE 637 ML ++ ++MAS G+ R G + + E+ ++ + E Sbjct: 598 AMLTVRQEEFDDPNKYIVMASRRGFIKKSELALFKNLRRVGLRALVIEEDDDLIGAGISE 657 Query: 638 DASDMLLAITQAGRMLMFPVSD--LPQLSK-GKGNKIINIP-SAEAARGEDGL------- 686 + ++ +L T+ G +F D + + + +G + ++ + + Sbjct: 658 NGNE-ILLSTKFGMACLFDQDDDQIRPMGRTARGVTGMRFKIEGDSVVSLEIIREHLYEE 716 Query: 687 -----------------AQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMR 729 ++ V+ + + K + +RG +G + Sbjct: 717 PAEDEEGEEVEVEVDVDEEMPVVGSGPEVLVVTDGGMGKRSYVSTYR-KTKRGAKGVVNI 775 Query: 730 GLQRIDRVEIDSPRRASSGDS 750 L+ + + S + + D Sbjct: 776 KLREGET--VLSVVQITEEDE 794 Score = 76.5 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 38/265 (14%), Positives = 85/265 (32%), Gaps = 50/265 (18%) Query: 478 SPLQEREEAKAMSEHDMLPSEPV------TIVLSQMGWVRSAKGHDI------DAPGLNY 525 + + + E + + + E ++ S+ G+++ ++ L Sbjct: 585 TNMIKVEPGEKICAMLTVRQEEFDDPNKYIVMASRRGFIKKSELALFKNLRRVGLRALVI 644 Query: 526 KAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP---PGATV 582 + D A ++ ++ G + D R G G + G +V Sbjct: 645 EEDDDLIGAGISENGNEILLSTKFGMACLFDQDD-DQIRPMGRTARGVTGMRFKIEGDSV 703 Query: 583 DHMLMESD------------------------------DQKLLMASDAGYGFVCTFNDLV 612 + + + ++L+ +D G G + Sbjct: 704 VSLEIIREHLYEEPAEDEEGEEVEVEVDVDEEMPVVGSGPEVLVVTDGGMGKRSYVSTYR 763 Query: 613 ARNR--AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGK-GN 669 R G I L E V+ V I D +L T+ G+++ P ++ ++ + G Sbjct: 764 KTKRGAKGVVNIKLREGETVLSVVQIT-EEDEILLTTERGQLVRIPAHEIRRVGRASYGV 822 Query: 670 KIINIPSAEAARGEDGLAQLYVLPP 694 +I+N+ S + G L ++ V Sbjct: 823 RIMNLNSGDRITGVAKLVEVDVPKS 847 >UniRef50_O83051 DNA gyrase subunit A n=6 Tax=Bacteria RepID=GYRA_TREPA Length = 813 Score = 770 bits (1988), Expect = 0.0, Method: Composition-based stats. Identities = 230/767 (29%), Positives = 393/767 (51%), Gaps = 37/767 (4%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 +++ + AY++YSM VI+ RALP + DGLKPV RRI+YAM E GL S +K A+ Sbjct: 14 PISIETEVKRAYIDYSMSVIVSRALPDVRDGLKPVHRRILYAMEEKGLRFSGPTRKCAKI 73 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VGDVLG +HPHGD++ Y+A+V + Q FS RYP++ QGN+G AA RYTE++++ Sbjct: 74 VGDVLGSFHPHGDASVYDALVRLGQDFSLRYPVIHPQGNFGTI-GGDPPAAYRYTEAKMA 132 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 + +E ++ ++ + T +VPNFD + EP +LP R P +L NG++GIAVGM T++PPHNLR Sbjct: 133 RIAESMVEDIKKETVSFVPNFDDSDVEPTVLPGRFPFLLANGSSGIAVGMTTNMPPHNLR 192 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 E+A A A I+ P ++ +L D + GPD+PT II + IR+ YE GRG + +RA + Sbjct: 193 EIAAAISAYIENPNLSIQELCDCINGPDFPTGG-IIFGKNGIRQSYETGRGKIVVRARFT 251 Query: 247 KE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 E ++ + +P+QV+ ++ +I R K + + ++ DE+ R+V+ Sbjct: 252 IETDSKGRDTIIFTEVPYQVNTTMLVMRIGELARAKVIEGIANVNDETSDRTGLRIVVEL 311 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRR 361 + V+NHLFA T L+ S+ + +N+ ++GRP + L +++ ++ R D V RR Sbjct: 312 KKGT-PAQVVLNHLFAKTPLQSSFNV-INLALVEGRPRMLTLKDLVRYFVEHRVDVVTRR 369 Query: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAEAIL 418 ++ L K +R+H++ L+ A ID++I +IR+ K L +F QA+AI+ Sbjct: 370 AHFELRKAQERIHLVRALIRALDAIDKIITLIRHSQNTELAKQRLREQFDFDNVQAQAIV 429 Query: 419 ELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRS 478 +++++ L LE +R E +L + L+ +L S +K+ ++KKE + A +GDDRR+ Sbjct: 430 DMQMKRLTGLEVESLRTELKDLTELISSLEELLTSPQKVLGVVKKETRDIADMFGDDRRT 489 Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK--------AGDS 530 + E + + D + E + I++S +G+++ K A D Sbjct: 490 DIVSN-EIEYLDVEDFIQKEEMVILISHLGYIKRVPVSAYRNQNRGGKGSSSANLAAHDF 548 Query: 531 FKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS--ARGQGEPLTGKLTLPPGATVDHMLM- 587 ++ V+FV S GR+Y + +P +G + L + + ++ Sbjct: 549 ISQIFTASTHDYVMFVTSRGRAYWLKVYGIPESGRANRGSHIKSLLMVATDEEITAIVSL 608 Query: 588 --ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLA 645 S+ + MA+ G T ++ V G + L ++ V+++D D ++ Sbjct: 609 REFSNKSYVFMATARGVVKKVTTDNFVNAKTRGIIALKLSGGDTLVSAVLVQD-EDEVML 667 Query: 646 ITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGK 704 IT+ G+ L ++ ++ + G I + ED +A + + Q + I Sbjct: 668 ITRQGKALRMSGREVREMGRNSSGVIGIKLT------SEDLVAGVLRVSEQRKVLIMTEN 721 Query: 705 RKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K V G RG G + + DR A E Sbjct: 722 GYGKRVSFSEFSVHG-RGTAGQKI--YTQTDRKGAIIGALAVLDTDE 765 Score = 85.4 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 35/217 (16%), Positives = 81/217 (37%), Gaps = 12/217 (5%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKA 533 + EE A+ ++ + + G V+ + L GD+ + Sbjct: 596 VATDEEITAIVSLREFSNKSYVFMATARGVVKKVTTDNFVNAKTRGIIALKLSGGDTLVS 655 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQK 593 AV + V+ + G++ + + G+ + L V +L S+ +K Sbjct: 656 AVLVQDEDEVMLITRQGKALRMSGREVREM-GRNSSGVIGIKLTSEDLVAGVLRVSEQRK 714 Query: 594 LLMASDAGYGFVCTFNDLV---ARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAG 650 +L+ ++ GYG +F++ K ++ + + D +D + IT G Sbjct: 715 VLIMTENGYGKRVSFSEFSVHGRGTAGQKIYTQTDRKGAIIGALAVLD-TDECMCITGQG 773 Query: 651 RMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGL 686 + + V + L +G G ++++I ++ G + Sbjct: 774 KTIRVDVCAISVLGRGAQGVRVLDIEPSDLVVGLSCV 810 >UniRef50_O84192 DNA gyrase subunit A n=16 Tax=Bacteria RepID=GYRA_CHLTR Length = 836 Score = 769 bits (1987), Expect = 0.0, Method: Composition-based stats. Identities = 234/771 (30%), Positives = 390/771 (50%), Gaps = 39/771 (5%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 ++ L E + +YL YSM VI+ RALP DGLKP QRRI+YAM +L L K +K Sbjct: 6 EIIVPKNLEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHRK 65 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 A+ GD G YHPHG+S Y +V MAQ ++ RYPLVDGQGN+G+ D AAMRYTE Sbjct: 66 CAKICGDTSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDG-DPAAAMRYTE 124 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +RL+ + LL +L + T D VPN+D T EP + P++ PN+L NG++GIAVGMAT+IPP Sbjct: 125 ARLTHSAIFLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPP 184 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HNL E+ +A + ++ +T+++ +L+++ GPD+PT II IR Y GRG +R+R Sbjct: 185 HNLGELIEATLLVLANSQTSIEDILEVMPGPDFPTGG-IICGTEGIRSTYYTGRGKLRLR 243 Query: 243 AVWKKEDG------AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 A E+ ++++ +P+ V+ +R++EQIA + K L + D+RDESD + R Sbjct: 244 ARMHVEENSDKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDG-IR 302 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 +V+ + + V+N L+ TD++ ++ N+ + P N+ ++S W+ R D Sbjct: 303 VVLELKKGESS-EVVINRLYKFTDVQVTFGANMLALD-KNLPRTMNIHRMISAWIRHRMD 360 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQ 413 ++RR Y L K R HILEG L A +DEV++ IR N++ K L+ F +E Q Sbjct: 361 VIQRRTRYELNKAEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVELFSFSEAQ 420 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 A AILEL+L L LE K++ E SEL ++ + +LA E + +++++ELQ + + Sbjct: 421 ALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKVLAEEELVKDIIREELQELHKVHK 480 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNY-------- 525 RR+ ++ + D++ E V I +S +V+ Sbjct: 481 TPRRTRIE-MDAGDVRDIEDIISDESVIITISGDDYVKRMPVKVFREQKRGGQGVTGFDM 539 Query: 526 -KAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLT-LPPGAT 581 K D KA + ++ + G+ Y + LP R +G+P+ L + PG Sbjct: 540 KKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVWRLPEGERRAKGKPIINFLEGIRPGEQ 599 Query: 582 VDHML---MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIED 638 V +L + L +A+ G + + + + G + + + ++ I + Sbjct: 600 VAAVLNVKRFEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIAARHIAN 659 Query: 639 ASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQST 697 + ++ T+ G + FP + + + +G + +++ + + D + V+ + Sbjct: 660 DEEKVMLFTRLGMAVRFPHDKVRPMGRAARGVRGVSLKNEQ-----DFVVSCQVVTEDQS 714 Query: 698 LTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSG 748 + + K + RG G R + R + + Sbjct: 715 VLVVCDNGFGKRSLVCDFR-ETNRGSVGV--RSIVINQRNGDVLGAISVTD 762 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 78/223 (34%), Gaps = 20/223 (8%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP------GLNYKAGDSFKA 533 ++ E+ A+ + ++ G V+ +P L GD A Sbjct: 594 IRPGEQVAAVLNVKRFEQGEYLFLATKKGVVKKVSLDAFGSPRKKGIRALEIDDGDELIA 653 Query: 534 A-VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGAT-VDHMLMES 589 A + V+ G + + R G G ++L V + + Sbjct: 654 ARHIANDEEKVMLFTRLGMAVRFPHDKV---RPMGRAARGVRGVSLKNEQDFVVSCQVVT 710 Query: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGK----ALITLPENAHVMPPVVIEDASDMLLA 645 +DQ +L+ D G+G D NR +I V+ + + D D +L Sbjct: 711 EDQSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQRNGD-VLGAISVTD-CDSILL 768 Query: 646 ITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGLA 687 ++ G+ + + D+ + + +G +++N+ + + L+ Sbjct: 769 MSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEKLS 811 Score = 54.5 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 26/188 (13%), Positives = 59/188 (31%), Gaps = 14/188 (7%) Query: 470 QAYGDDRR---SPLQEREEAKAMSEHDMLPSEPVTIVLSQMG--------WVRSAKGHDI 518 A+G R+ L+ + + ++ + E ++ +++G VR Sbjct: 630 DAFGSPRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAAR 689 Query: 519 DAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 577 G++ K D + +Q V+ V G + + Sbjct: 690 GVRGVSLKNEQDFVVSCQVVTEDQSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQ 749 Query: 578 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL--VARNRAGKALITLPENAHVMPPVV 635 V + +D +L+ S G D+ + R G L+ L E ++ Sbjct: 750 RNGDVLGAISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEK 809 Query: 636 IEDASDML 643 + ++ + Sbjct: 810 LSINTESV 817 >UniRef50_A8G5D2 DNA gyrase/topoisomerase IV, subunit A n=16 Tax=Cyanobacteria RepID=A8G5D2_PROM2 Length = 865 Score = 768 bits (1984), Expect = 0.0, Method: Composition-based stats. Identities = 247/799 (30%), Positives = 406/799 (50%), Gaps = 60/799 (7%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 +D + L +YL Y+M VI+ RALP DGLKPV RRI+YAM ELGL + ++ Sbjct: 16 NDRIIQTDLRNEMSRSYLEYAMSVIVGRALPDARDGLKPVHRRILYAMYELGLTSGRPYR 75 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K AR VG+VLGKYHPHGD+A Y+A+V MAQ FS R PL+DG GN+G+ D AAMRYT Sbjct: 76 KCARVVGEVLGKYHPHGDTAVYDALVRMAQDFSMRMPLIDGHGNFGSVD-NDPPAAMRYT 134 Query: 122 ESRLSKYSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 ESRL ++ LL ++ T D+ NFDG+ QEP +LPAR+P +LLNG++GIAVGMAT+I Sbjct: 135 ESRLQSLTDESLLEDIESETVDFSDNFDGSQQEPTVLPARIPQLLLNGSSGIAVGMATNI 194 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL E+ ++I P +L +I++GPD+PT +I+ R IR+ ++ G+GS+ Sbjct: 195 PPHNLGELINGLKSIIKNPSIEDRELFEIIKGPDFPTGGQIL-GREGIRETFKTGKGSIT 253 Query: 241 MRAVWKK---------EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDH 291 MR V E AV+I+ LP Q + A ++E+IA + KKL + D+RDESD Sbjct: 254 MRGVANIEQIKSIGRAEKDAVIITELPFQTNKAALIERIADLVNEKKLEGISDIRDESDR 313 Query: 292 ENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWL 351 + ++ + R + V+N+LF T L+ ++ N+ + + G P +L ++L +L Sbjct: 314 DGMRIVIELKRDSY--PQVVLNNLFKLTPLQNNFSANI-LALVKGEPTTLSLRKMLDVFL 370 Query: 352 VFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFG 408 FR +T+RRR + L+K +R HI++GLL+A +DE+I +IR+ + + L + Sbjct: 371 DFRVETIRRRTAFLLKKAEERDHIVKGLLLALDAMDEIINLIRSAKDSISAREKLQNEHK 430 Query: 409 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 L+ Q++AIL+++LR L LE KI+ E +EL ++ + Q IL S+ ++ ++ +EL Sbjct: 431 LSSIQSDAILQMQLRRLTALEADKIKEEHNELTRKINLYQQILNSKERIFEIILEELNQI 490 Query: 469 AQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI--------DA 520 + R++ + + + D++ ++ ++L++ G+++ +D Sbjct: 491 DGKFSSPRKTEILDLGGGLD--DIDLIANDRSVVLLTEAGYLKRMPVNDFESTSRGSRGK 548 Query: 521 PGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPP 578 G K D K + + ++ G +YA+ +P S +G P L +P Sbjct: 549 AGTKTKEDDDVKLFISCNDHDTLLLFSDRGVAYALPAYRVPMSSRTAKGTPSVQLLPIPR 608 Query: 579 GATVDHMLMES---DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVV 635 + ++ DD+ LLM + AG+ + G I L + + + Sbjct: 609 EEKITSLVAVDSFVDDRYLLMLTKAGFIKRTALSAFSKIRSNGLIAINLEDGDALTWVRL 668 Query: 636 IEDASDMLLAITQAGRMLMF--PVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYV- 691 ++ D +L ++ G + F +++L L + +G K +N+ + D L V Sbjct: 669 SKEG-DSVLIGSKTGIAIHFRLDINELRPLGRTARGVKSMNLREGDNLVSMDVLTSNLVD 727 Query: 692 -------------------LPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQ 732 + I K P ++ +R G + Sbjct: 728 QLAKIEDLTEDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQ-KRAGMGLRAIKFR 786 Query: 733 RIDRVEIDSPRRASSGDSE 751 D + + E Sbjct: 787 IKD--DQLVCLKVLGEGEE 803 Score = 76.1 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 72/233 (30%), Gaps = 38/233 (16%) Query: 483 REEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVK 536 E+ ++ D + ++L++ G+++ +N + GD+ Sbjct: 609 EEKITSLVAVDSFVDDRYLLMLTKAGFIKRTALSAFSKIRSNGLIAINLEDGDALTWVRL 668 Query: 537 GKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLME------ 588 K V+ TG + + R G G + L G + M + Sbjct: 669 SKEGDSVLIGSKTGIAIHFRL-DINELRPLGRTARGVKSMNLREGDNLVSMDVLTSNLVD 727 Query: 589 --------------------SDDQKLLMASDAGYGFVCTFNDLVARNRAG--KALITLPE 626 SD +L+AS G G + RAG I Sbjct: 728 QLAKIEDLTEDLDDNVEENSSDGPWVLIASAFGLGKRVPVAQFRLQKRAGMGLRAIKFRI 787 Query: 627 NAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAE 678 + + + + LL +T+ G ++ + Q S+ G K+ + + Sbjct: 788 KDDQLVCLKVLGEGEELLLVTEKGVIVRTNADKISQQSRAATGVKLQRLDDGD 840 >UniRef50_C1TNA3 DNA gyrase subunit A n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TNA3_9BACT Length = 814 Score = 767 bits (1981), Expect = 0.0, Method: Composition-based stats. Identities = 261/772 (33%), Positives = 412/772 (53%), Gaps = 37/772 (4%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + R L E + +YL+Y+M VI+ RALP DGLKPVQRRI++AM ELGL + + Sbjct: 6 LFGKIIRHPLVEEIKRSYLDYAMSVIVGRALPDARDGLKPVQRRILFAMQELGLRHNQSY 65 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VG+ +GKYHPHGDSA Y+ MV +AQ FS RY LVDGQGN+G+ D S AAMRY Sbjct: 66 KKSARVVGETMGKYHPHGDSAIYDTMVRLAQNFSMRYTLVDGQGNFGSIDG-DSAAAMRY 124 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RL + EL+L ++ + T +W PNFD +L+EP +LP+++PN+L+NG+TGIAVGMAT++ Sbjct: 125 TEARLQELGELMLQDIDEDTVEWGPNFDESLKEPMVLPSQVPNLLVNGSTGIAVGMATNM 184 Query: 181 PPHNLREVAQAAIALID-QPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSV 239 PPHNL EV A LI+ + +L+ + GPD+PT I+ + I Y GRG + Sbjct: 185 PPHNLGEVVDAICYLIEAGDQADFGELMARMPGPDFPTGGVIL-GKDGIIDAYRTGRGRL 243 Query: 240 RMRAVWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENP 294 ++ + E+G VVI+ +P+ V+ ++E IA+ ++NK + V D+RDESD + Sbjct: 244 VVQGLVHVEEGKRGKSNVVITEIPYMVNKTTMIETIASCVQNKTIDGVTDIRDESDRKGL 303 Query: 295 TRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFR 354 ++ V R VD D V+ L+ + L+ ++ + +N+ +DGRP +L ++L+ +L R Sbjct: 304 RVVLEVSR--DVDPDLVIRQLYRRSQLQNTFGV-INLALVDGRPVELSLTDMLNVFLGHR 360 Query: 355 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTE 411 R VRRR +RL+K R HILEGL+ A ID VI +IR D K L++ +E Sbjct: 361 RTVVRRRTEFRLKKAEARAHILEGLVKALDVIDRVIALIRGSDNAALAKERLVAELDFSE 420 Query: 412 TQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQA 471 QA+AIL++KL+ L LE K+ E + L + + + IL SE+ ++ ++ +EL A Sbjct: 421 IQAQAILDMKLQRLTGLERDKLNDEFAGLLADIQRYRSILDSEKVLDGVIVEELVALKGK 480 Query: 472 YGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GL 523 YGDDRR+ + +R + S+ D++P E + ++LS+ G++R D G Sbjct: 481 YGDDRRTKIVDRV-GQDCSDEDLIPREDIVVMLSRDGYLRRVPLEDYSLQAKGGKGRRGA 539 Query: 524 NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITL-PSARGQGEPLTGKLTLPPGATV 582 + D ++ + + GR +AI + S G+G+ + ++L V Sbjct: 540 RLREEDEVSLMGVSTTHDDIFLFTTKGRVFAIKGYIISESRTGKGKLIGKYISLENDERV 599 Query: 583 DHMLME--SDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDAS 640 M + L + G ++L RAG+ ++TL E + ++ Sbjct: 600 VSMKTRRGQESGFLFFLTRRGIAKRLPSSELDNLTRAGRRVVTLDEGDE-IAQILPTSGM 658 Query: 641 DMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT 699 D LL ++ G+ L + + + +G K + + + + + Sbjct: 659 DDLLLVSAMGQALRVSEDEFRPMGRSARGVKAMRLKDGDRIISGEVVT------EDRRPI 712 Query: 700 IHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 + K E V RG G M+ + R + + + S D E Sbjct: 713 LVSETGIGKRTNFEDFTVH-HRGGGG--MKVMSINSRTGLLAAATSVSEDDE 761 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 27/202 (13%), Positives = 71/202 (35%), Gaps = 14/202 (6%) Query: 496 PSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK------AGDSFKAAVKGKSNQPVVFVDST 549 L++ G + ++D + GD + ++ V + Sbjct: 608 QESGFLFFLTRRGIAKRLPSSELDNLTRAGRRVVTLDEGDEIAQILPTSGMDDLLLVSAM 667 Query: 550 GRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLMESDDQKLLMASDAGYGFVCT 607 G++ + R G G + L G + + ++D++ ++ S+ G G Sbjct: 668 GQA--LRVSE-DEFRPMGRSARGVKAMRLKDGDRIISGEVVTEDRRPILVSETGIGKRTN 724 Query: 608 FNDLVARNRAG--KALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 665 F D +R G ++++ ++ D ++ +T GRM+ ++ L + Sbjct: 725 FEDFTVHHRGGGGMKVMSINSRTGLLAAATSVSEDDEIIVMTAKGRMIRVAAKEIRVLGR 784 Query: 666 -GKGNKIINIPSAEAARGEDGL 686 G+ ++ + ++ + Sbjct: 785 TAAGSIVVRLDGGDSVVDLSVV 806 >UniRef50_P22446 DNA gyrase subunit A n=3 Tax=Mycoplasma RepID=GYRA_MYCPN Length = 839 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 246/767 (32%), Positives = 397/767 (51%), Gaps = 36/767 (4%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 + ++L E +++ Y+M VI+ RALP DGLKPV RR++Y G++ FKKSA Sbjct: 20 IKNISLSSELERSFMEYAMSVIVARALPDARDGLKPVHRRVLYGAYTGGMHHDRPFKKSA 79 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 R VGDV+ K+HPHGD A Y+ M MAQ FS RY L+DG GN+G+ D AA RYTE+R Sbjct: 80 RIVGDVMSKFHPHGDMAIYDTMSRMAQDFSLRYLLIDGHGNFGSIDG-DRPAAQRYTEAR 138 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 LSK + LL ++ + T D+V N+DG QEP +LPA PN+L NG++GIAVGM+T IP HN Sbjct: 139 LSKLAGELLRDIDKDTVDFVANYDGEEQEPTVLPAAFPNLLANGSSGIAVGMSTSIPSHN 198 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 L E+ Q I LID P T++ LL +++GPD+PT A II ++ I +E G+G+V +R+ Sbjct: 199 LSELIQGLILLIDNPDCTINDLLGVIKGPDFPTGANIIYTK-GIESYFETGKGNVVIRSK 257 Query: 245 WKKE----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 E A+V++ +P+ V+ ++E+I ++ +++ + D+RDES E RLVI Sbjct: 258 VSIEQLPTRAALVVTEIPYMVNKTSLIEKIVELVKAEEITGIADIRDESSREG-IRLVIE 316 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360 + + V + ++N LF +T L+ + +N+ + + G P + N+ + L+ +L + D + R Sbjct: 317 VKRDTV-PEVLLNQLFKSTRLQVRFPVNM-LALVKGAPKLLNMKQALTVYLEHQLDVLIR 374 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAEAI 417 + + L+K +R HIL GLL+A LNIDEVI II+ AL RFGL E QA A+ Sbjct: 375 KTQFNLKKYQERFHILSGLLIAALNIDEVIAIIKKSANNQVAMEALHERFGLDEIQARAV 434 Query: 418 LELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRR 477 L+++LR L+ LE K++ EQ EL+ + Q +LA ++ L+K++L + +GD RR Sbjct: 435 LDMRLRSLSVLEVNKLQTEQQELKALIEFCQQVLADKQLQLKLIKEQLTKINEQFGDPRR 494 Query: 478 SPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GLNYKAGD 529 S + ++ + + D++ E V I +S G+++ + GL D Sbjct: 495 SEILY-GISEDIDDEDLITQENVVITMSTNGYLKRIGVDAYNLQHRGGVGVKGLTTYTDD 553 Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHMLM 587 S + ++ ++F G+ Y I +P +G P + + + ++ Sbjct: 554 SISQLLVCSTHSDLLFFTDKGKVYRIRAHQIPPGFRTNKGIPAVNLIKIDKDEKICALIS 613 Query: 588 ESDDQ--KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLA 645 +D Q + G + ++ GK I EN + + D + Sbjct: 614 VNDYQNGYFFFCTKNGTIKRTSLSEFANILSIGKRAILFKENDVLFSVIR-TSGQDDIFI 672 Query: 646 ITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGK 704 + AG ++ F + LS+ G IN+ E G L S L Sbjct: 673 GSTAGFVVRFHEDTVRPLSRAAMGVLGINLNQCEFVNG------LSTSSNGSLLLSVGQN 726 Query: 705 RKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 KL + ++T +R +G + L+ + G+ + Sbjct: 727 GIGKLTSIDKYRLT-KRNAKGV--KTLRVTAKTGPVVTTTTVFGNED 770 Score = 69.6 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 29/213 (13%), Positives = 66/213 (30%), Gaps = 20/213 (9%) Query: 502 IVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAI 555 ++ G ++ + + +K D + ++ + + G Sbjct: 623 FFCTKNGTIKRTSLSEFANILSIGKRAILFKENDVLFSVIRTSGQDDIFIGSTAGFVVRF 682 Query: 556 DPITLP--SARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL-- 611 T+ S G + L V+ + S+ LL G G + + + Sbjct: 683 HEDTVRPLSRAAMG---VLGINLNQCEFVNGLSTSSNGSLLLSVGQNGIGKLTSIDKYRL 739 Query: 612 VARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNK 670 RN G + + + ++ LL I+ AG+++ + L + K G K Sbjct: 740 TKRNAKGVKTLRVTAKTGPVVTTTTVFGNEDLLMISSAGKIVRISLEQLSEQRKNTSGVK 799 Query: 671 IINIPSAEAARGEDGLAQLYVLPPQSTLTIHVG 703 +I + E L + + + + Sbjct: 800 LIKLKEKER------LETVTIFKKEEAIKTTTA 826 >UniRef50_B0S912 DNA gyrase subunit A n=6 Tax=Leptospira RepID=B0S912_LEPBA Length = 843 Score = 764 bits (1973), Expect = 0.0, Method: Composition-based stats. Identities = 246/770 (31%), Positives = 398/770 (51%), Gaps = 37/770 (4%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + + + + AYL+Y+M VI+ RALP + DGLKPV RR+++AM+E + + KS Sbjct: 34 RVIPVEIEDQMKEAYLDYAMSVIVGRALPDVRDGLKPVHRRVLHAMNERAWRSDRPYVKS 93 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 A+ VG+V+G YHPHGDSA YE MV MAQ FS R L+DGQGN+G+ D + AA RYTE+ Sbjct: 94 AKIVGEVIGNYHPHGDSAVYETMVRMAQTFSMRETLIDGQGNFGSVDG-DNAAAYRYTEA 152 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 RL+K +E LL ++ + T + PNFD T Q+P +LPA PNIL+NG+TGIAVGMAT+IPPH Sbjct: 153 RLTKLAEELLKDIEKNTVSFSPNFDDTRQQPDVLPANFPNILVNGSTGIAVGMATNIPPH 212 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL+E A IALI P TL +L+ I+ GPD+PT I + + Y G+GS+R+R+ Sbjct: 213 NLKEAVNAVIALIQNPDITLPELMKILPGPDFPTG-GTIIGGEGLYQAYATGKGSIRIRS 271 Query: 244 VWKKEDGA-----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + +VI +P+QV+ +LE+I + K + + ++ D SD + + Sbjct: 272 KVDIIENNKGREIIVIHEIPYQVNKKNMLEKIGDLVNEKIIEGISEILDLSDRKGIRVEI 331 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 V + + ++N LF T L+ SY I + I D RP + +L EIL + RR+ V Sbjct: 332 HVKK--DANAQVILNQLFKLTQLQVSYGITMLAIL-DNRPKIFSLKEILKSYAEHRREVV 388 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQAE 415 +R + L+K KR HILEGL +A NIDEVI IIR + + A LM+ F L+E QA+ Sbjct: 389 VKRTEFDLDKAQKRAHILEGLRIALENIDEVIRIIRASKDVREAQSSLMATFSLSELQAD 448 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 AILE++L+ L LE KI E ++ L+ IL+ ++ +++ EL +Q++G+ Sbjct: 449 AILEMRLQRLTSLEVQKIIDELEQVRILIADLEDILSKPDRVKSIICDELGKVSQSFGNT 508 Query: 476 RRSPL-QEREEAKAMSEHDMLPSEPVTIVLSQMGWVR--------SAKGHDIDAPGLNYK 526 R + + E E+ + D++ E V + LS+ +++ K G++ K Sbjct: 509 RTTEISLESLESSTFNAEDLIADEEVVVQLSEDMFIKRLPMDTFRRQKRGGKGVQGISTK 568 Query: 527 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDH 584 D K ++ ++ + GR++ + LP A +G+ L + L + Sbjct: 569 REDFVKKLSSAMTHDNLMLFSNKGRAFLLKVYELPIATKEARGKSLKAVINLNDDEIITS 628 Query: 585 MLMES--DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM 642 + D+ LLM + G+ ++ ++G I L + ++ + + D Sbjct: 629 LFTFRNFDESYLLMVTREGFVKKIQLDEFTNTKKSGIIAIGLRDGDELIDVIANPNNYD- 687 Query: 643 LLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 + ++ G + +++L + G + + +D +A + + P + L Sbjct: 688 VFIGSKNGLAIRMNLNELRSQGRTASGVTAMKLED------DDSIAGITKVEPNTNLFCI 741 Query: 702 VGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K E +GR G M L+ ++ + + E Sbjct: 742 SENGFGKRTDFEEF---STKGRGGKGMTYLKIGEKNGRAVGISSVKEEDE 788 Score = 95.0 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 76/211 (36%), Gaps = 14/211 (6%) Query: 497 SEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTG 550 E +++++ G+V+ + + + + GD + +N V G Sbjct: 636 DESYLLMVTREGFVKKIQLDEFTNTKKSGIIAIGLRDGDELIDVIANPNNYDVFIGSKNG 695 Query: 551 RSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTF 608 + ++ L R QG +G + L ++ + + L S+ G+G F Sbjct: 696 LAIRMNLNEL---RSQGRTASGVTAMKLEDDDSIAGITKVEPNTNLFCISENGFGKRTDF 752 Query: 609 NDLVARNRAGKALITLPENAHVMPPVVIED--ASDMLLAITQAGRMLMFPVSDLPQLSKG 666 + + R GK + L V I D LL ITQ+G + V + + + Sbjct: 753 EEFSTKGRGGKGMTYLKIGEKNGRAVGISSVKEEDELLVITQSGMAIRVEVKTISMVGRS 812 Query: 667 K-GNKIINIPSAEAARGEDGLAQLYVLPPQS 696 G K++N + + + + +S Sbjct: 813 AMGVKVVNTKDEDFVKDFAVVRESDSDSAES 843 >UniRef50_Q9ZLD9 DNA gyrase subunit A n=50 Tax=Campylobacterales RepID=GYRA_HELPJ Length = 828 Score = 764 bits (1972), Expect = 0.0, Method: Composition-based stats. Identities = 262/770 (34%), Positives = 414/770 (53%), Gaps = 37/770 (4%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 + + + E +YL YSM VI+ RALP DGLKPV RRI+YAM ELGL + +K Sbjct: 9 TKNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYK 68 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VGDV+GKYHPHGD+A Y+A+V MAQ FS R LVDGQGN+G+ D + AAMRYT Sbjct: 69 KSARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDG-DNAAAMRYT 127 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+R++K SE +L ++ + T D+VPN+D TL+EP +LP+RLPN+L+NG GIAVGMAT IP Sbjct: 128 EARMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIP 187 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PH + E+ A ++ P LD++L+ V+GPD+PT II +A I + Y+ GRG V++ Sbjct: 188 PHRIDEIIDALAHVLGNPNAELDKILEFVKGPDFPTGG-IIYGKAGIVEAYKTGRGRVKV 246 Query: 242 RAVWKKEDGA----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 RA E +V+ +P Q + A+++EQI+ R K++ + ++RDESD E R+ Sbjct: 247 RAKVHVEKTKNKEIIVLGEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREG-IRV 305 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 VI + + + + V+NHL+ T +E ++ I L I + P + LLE+L +L R+ Sbjct: 306 VIELKRDAMS-EIVLNHLYKLTTMETTFSIILLAI-YNKEPKIFTLLELLRLFLNHRKTI 363 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP---KPALMSRFGLTETQA 414 + RR + LEK R HILEG L+A NIDE++ +I+ P K AL+ RF L+E Q+ Sbjct: 364 IIRRTIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALIERFSLSEIQS 423 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 +AILE++L+ L LE KI+ E L + D L GIL SE ++N ++K EL + + Sbjct: 424 KAILEMRLQRLTGLERDKIKEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFSS 483 Query: 475 DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK-------- 526 RR+ +QE E+ D++ +EP+ + +S G+V+ + K Sbjct: 484 PRRTEIQESYESIDTE--DLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGSTY 541 Query: 527 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDH 584 D + ++ ++F+ + G+ Y + +P A G+ + ++L P + Sbjct: 542 EDDFIENFFVANTHDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLISLAPNEKIMA 601 Query: 585 MLM---ESDDQKLLMASDAGYGFVCTFNDLVARNR-AGKALITLPENAHVMPPVVIEDAS 640 L SD++ L + G ++ +G I L E ++ V++ + Sbjct: 602 TLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNA 661 Query: 641 DMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT 699 LL + G + FP+ D+ ++ + +G I + + G + + + L Sbjct: 662 KHLLIASYLGMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVG-----AVVISDDSNKLL 716 Query: 700 IHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGD 749 K E + RG +G + G++ + + + Sbjct: 717 SVSENGLGKQTLAEAYR-EQSRGGKGVI--GMKLTQKTGNLVSVISVDDE 763 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 73/214 (34%), Gaps = 18/214 (8%) Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP-------GLNYKAGDSF 531 L E+ A E ++ G V+ + + GD Sbjct: 592 SLAPNEKIMATLSTKDFSDERSLAFFTKNGVVKRTNLSEFGGNRSYSGIRAIVLDEGDEL 651 Query: 532 KAAVKG-KSNQPVVFVDSTGRSYAIDPITLPS--ARGQGEPLTGKLTLPPGATVD-HMLM 587 A K+ + ++ G + +G + L V +++ Sbjct: 652 VGAKVVDKNAKHLLIASYLGMFIKFPLEDVREIGRTTRG---VMGIRLNENDFVVGAVVI 708 Query: 588 ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP---ENAHVMPPVVIEDASDMLL 644 D KLL S+ G G ++R GK +I + + +++ + ++D + L+ Sbjct: 709 SDDSNKLLSVSENGLGKQTLAEAYREQSRGGKGVIGMKLTQKTGNLVSVISVDDENLNLM 768 Query: 645 AITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSA 677 +T + +M+ + D+ + + G K+IN Sbjct: 769 ILTASAKMIRVSIKDIRETGRNASGVKLINTADK 802 >UniRef50_P47719 DNA gyrase subunit A n=26 Tax=Bacteria RepID=GYRA_MYCGA Length = 846 Score = 764 bits (1972), Expect = 0.0, Method: Composition-based stats. Identities = 229/768 (29%), Positives = 398/768 (51%), Gaps = 36/768 (4%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 + ++ + E +++ Y+M VI+ RALP DGLKPV RR++Y GL ++KSA Sbjct: 18 VKEASITKELETSFMEYAMSVIVSRALPESRDGLKPVHRRVLYGAYTSGLTHDKPYRKSA 77 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 + VG V+GKYHPH DSA YE MV MAQPFS RY L+DG GN+G+ D S AAMRYTE+R Sbjct: 78 QIVGHVMGKYHPHSDSAIYETMVRMAQPFSLRYMLIDGHGNFGSIDG-DSAAAMRYTEAR 136 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 LSK S +L + + T D+V N+D + QEP +LP+ PN+L NG++GIAVGMAT+IPPHN Sbjct: 137 LSKISAEMLRNIDKDTVDFVDNYDASEQEPIVLPSLFPNLLANGSSGIAVGMATNIPPHN 196 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 L E+ L+ T+++L + ++GPD+PT AEI+ I + + GRGSV +RA Sbjct: 197 LSELIGGIKHLLVNENATIEELKEFIKGPDFPTAAEIL-GETGINEYFNTGRGSVSVRAK 255 Query: 245 WKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 + E+ +VI+ +P+ V+ A ++ +IA ++ +++ + DLRDES+ E ++ Sbjct: 256 SEIEELANNKSNIVITQIPYMVNKANLINKIAELVKTEQIQGIADLRDESNREGIRIVIE 315 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 R V + ++N L+ +T L+ ++ + + + ++ +P V NL E L ++ + D + Sbjct: 316 TKR--DVIPEVLLNQLYKSTQLQTNFSVAM-LALVNNQPKVLNLKEALQIYIDHQFDILL 372 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQAEA 416 R+ N+ L+K HI+EGL++A NID+VIE I+N + K LM+++ L++ QA+A Sbjct: 373 RKTNFELKKAKASAHIVEGLVIATNNIDDVIETIKNAKDNEDAKNTLMTKYELSDLQAKA 432 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDR 476 IL+++LR L+ LE ++ E ++L++ L+ IL ++ + ++ +L +GD+R Sbjct: 433 ILDMRLRSLSGLERENLQKELAKLKELIKDLEEILQNKERRIKIISDQLDEIDHKFGDER 492 Query: 477 RSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GLNYKAG 528 R+ + + + ++P E V I S G+++ G+N Sbjct: 493 RTKICYGLNST-IDNEQLIPVETVVITRSSKGYLKRIPISAYKVQHRGGVGVKGMNTYED 551 Query: 529 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHML 586 D ++ + ++ ++F + G+ Y I +P S +G P +++ + +L Sbjct: 552 DDVESLIVCSTHSDLLFFTNYGKVYRIRAHQVPLGSRISKGIPAINLISIEKDEKLMSLL 611 Query: 587 MESDDQ--KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLL 644 +D ++ G ++ GK I L EN + + + + Sbjct: 612 SINDYDSGYFFFSTKKGLVKRVKASEFSRIQNNGKIAIKLTENDSLFKVIK-TAGDEEIY 670 Query: 645 AITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVG 703 +G ++ F + + + G + D + L S L Sbjct: 671 IGVSSGLLVRFKEDVVRSMGRTAQGVIGVKFK-----NPNDEVIGLSSSHEGSLLLAVCE 725 Query: 704 KRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K K+ E ++T RG +G + ++ + + +G+ E Sbjct: 726 KGVGKMTDREEYRMT-NRGSKGVI--TIKVTPKTGNIINTQLVNGNEE 770 Score = 75.0 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 75/191 (39%), Gaps = 17/191 (8%) Query: 505 SQMGWVRSAKGHDIDAPGLNYK------AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPI 558 ++ G V+ K + N K DS +K ++ + S+G Sbjct: 625 TKKGLVKRVKASEFSRIQNNGKIAIKLTENDSLFKVIKTAGDEEIYIGVSSGLLVRFKED 684 Query: 559 TLPSARGQGEPLTGKLTLP---PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARN 615 + R G G + + P V + + LL + G G + + N Sbjct: 685 VV---RSMGRTAQGVIGVKFKNPNDEVIGLSSSHEGSLLLAVCEKGVGKMTDREEYRMTN 741 Query: 616 RAGKALITLP---ENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKI 671 R K +IT+ + +++ ++ + ++ LL I+ G+++ P++++ + + G K+ Sbjct: 742 RGSKGVITIKVTPKTGNIINTQLV-NGNEELLMISSTGKIVRVPLAEVSEQGRNTSGVKL 800 Query: 672 INIPSAEAARG 682 I++ E + Sbjct: 801 ISLNEKETLQS 811 >UniRef50_B8FW91 DNA gyrase, A subunit n=2 Tax=Desulfitobacterium hafniense RepID=B8FW91_DESHD Length = 808 Score = 763 bits (1970), Expect = 0.0, Method: Composition-based stats. Identities = 253/769 (32%), Positives = 398/769 (51%), Gaps = 29/769 (3%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + + +L E +YL YS +VI+ RA+P + DGLKPV RRI+YAM ELG+ + K Sbjct: 6 ENITQRSLEEVLPESYLGYSKHVILQRAVPDVRDGLKPVHRRIIYAMDELGMTPDKPYSK 65 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SAR VGD +GKYHPHGDS+ Y+A V MAQP++ RYPL+DGQGN+G+ D AAMRYTE Sbjct: 66 SARLVGDCMGKYHPHGDSSIYDAAVRMAQPWATRYPLIDGQGNFGSIDG-DGAAAMRYTE 124 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 R++ S+L+ ++ + + PN+D +EP +LP+ PN+L+NG +GIAVGMA++IPP Sbjct: 125 MRMTHLSQLMTQDIEKDVIPFKPNYDQREKEPIVLPSPFPNLLVNGGSGIAVGMASNIPP 184 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HNLREV A I ID P TL+QL++ V+GPD+PT II S+ + Y +GRG V MR Sbjct: 185 HNLREVVAALILQIDNPHVTLEQLMEKVKGPDFPTGGLIIGSQ-GFTEAYRSGRGKVTMR 243 Query: 243 AVWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 E +VI+ +P QVS + + +I AQ N K+ + ++RDESD E + Sbjct: 244 GKAIIESGKNGKSLIVITEIPFQVSKSTLAAKIEAQSENGKIEGISEVRDESDREGIRLV 303 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 V + D +++ L+ T L++++ I +I +G P V L EI +L RR+ Sbjct: 304 VECKK--DADPKRILKLLYKYTQLQETFGIINLVISEEGTPRVLGLKEINHSYLQHRREV 361 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP---KPALMSRFGLTETQA 414 V RR Y L K R HILEGL++A N+DEV++IIR+ P K L++RF +E QA Sbjct: 362 VLRRTEYELAKAKARAHILEGLVIAINNLDEVLQIIRSSKTPALAKAGLITRFEFSEVQA 421 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 +AIL++KL+HL LE IR E +E+ K +L+ ILA K+ ++K EL+ A YGD Sbjct: 422 QAILDMKLQHLTNLELDGIRKEYAEILKLIAELESILADINKVYTIIKNELKQIADQYGD 481 Query: 475 DRRSPLQEREEAKAMSEHDM-LPSEPVTIVLSQMGWVRSAK----GHDIDAPGLNYKAGD 529 +RR+ + + + P +P+ ++L++ G+++ I+A +K GD Sbjct: 482 ERRTLILPEDVGDEVDYSAFEEPEKPMEVLLTRKGFIKQIPTPTRRSQINAIAFAFKDGD 541 Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS--ARGQGEPLTGKLTLPPGATVDHMLM 587 V S + F +G+ Y + A+ +G + LP + M+ Sbjct: 542 VLLEHVSCTSKDTLYFFTHSGKYYDAKAKLVAEAGAKEKGRAVNNLFPLPEEERIVAMVS 601 Query: 588 ---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLL 644 E + Q + + G D + A + L E ++ + L Sbjct: 602 LREEKEGQYFVFVTKDGQVMRSPVKDFLNARTA--EAMGLKEQDEIVKVFLSA-GEGELF 658 Query: 645 AITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVG 703 + G+ + F +++ + + +G K + + + + +T+ Sbjct: 659 LASLQGQAIRFAEAEVNPMGRKSRGVKGMTLNEGDYVVDALLIQPGADGETGDLITV-TE 717 Query: 704 KRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSEE 752 + +K E K G R RG + + ++ ++ Sbjct: 718 QGYVKRTSLEEYKPQG-RAGRGIAIAKI-DAEKTGYLVSLIQVGPKEDK 764 >UniRef50_C8NBL7 Topoisomerase IV subunit A n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NBL7_9GAMM Length = 749 Score = 759 bits (1960), Expect = 0.0, Method: Composition-based stats. Identities = 403/735 (54%), Positives = 525/735 (71%), Gaps = 1/735 (0%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 E+ L F E AYL+YSMYVI+DRALP IGDGLKPVQRRI+YAMSELGL+ +K KKSAR Sbjct: 7 EQQPLAGFVEKAYLDYSMYVILDRALPHIGDGLKPVQRRIIYAMSELGLSHQSKHKKSAR 66 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 TVGDV+GKYHPHGDSACYEAMVLMAQ F+YRYPLVDGQGNWG+ DDPKSFAAMRYTESRL Sbjct: 67 TVGDVIGKYHPHGDSACYEAMVLMAQDFAYRYPLVDGQGNWGSADDPKSFAAMRYTESRL 126 Query: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 + Y++ LL+EL QGT +WV NFDGTLQEP LPARLPNILLNG +GIAVGMAT++ PHNL Sbjct: 127 TGYAKTLLAELEQGTVEWVANFDGTLQEPARLPARLPNILLNGGSGIAVGMATNLLPHNL 186 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245 EV A ALI P T D L+ + PD+PT E++++R EI +Y GRG+VR+RA W Sbjct: 187 GEVVAACRALIADPLLTDDALMQYIPAPDFPTGGELVSAREEIAALYRTGRGAVRLRATW 246 Query: 246 KKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNR 305 EDG ++I LP+QVSG++V EQIA QM+ KKL ++DLRDESDHE+P RLV+VPRSNR Sbjct: 247 HLEDGNIIIDQLPYQVSGSKVQEQIAKQMQAKKLAWLEDLRDESDHEHPIRLVLVPRSNR 306 Query: 306 VDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYR 365 VD +++M HLFATTDLEK Y +NMIGLDGRP VKNL +IL EWLV+R +TVRRRLN+R Sbjct: 307 VDHERLMQHLFATTDLEKRYSAQMNMIGLDGRPQVKNLGQILREWLVYREETVRRRLNHR 366 Query: 366 LEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHL 425 L V +RLHIL+GLL+A+LN+DE+I IIR EDEP+P LM+ F L+E QAEAIL +LRHL Sbjct: 367 LHAVNERLHILQGLLIAYLNLDEIIRIIRTEDEPRPVLMATFALSEAQAEAILNTRLRHL 426 Query: 426 AKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREE 485 A+LEE++IR EQ L E+ L +L S ++ L+ EL ADA YGD RR+ + ERE Sbjct: 427 ARLEEIQIRAEQEALAAEQQHLHELLQSRERLLTLIADELAADAATYGDARRTVIIEREA 486 Query: 486 AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVF 545 A A+ E ++ PSE VT++LS+MGW+R KGH ID L YK GD++ + G+SNQ Sbjct: 487 AVALDETELTPSEAVTLILSKMGWIRGGKGHAIDGAALTYKNGDAYLTQISGRSNQQACL 546 Query: 546 VDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFV 605 + GRSY + LPSAR GEPL+ +++ A + + +++ L+A+D GYGF+ Sbjct: 547 LADNGRSYTLALHGLPSARSYGEPLSSSMSIDASAHIIAAAIIEPERRYLIAADNGYGFL 606 Query: 606 CTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 665 +L ++ ++GK LIT + + + D +LAI+ GR+ + P ++P+L+K Sbjct: 607 IPGAELTSKTKSGKTLITPGGASRAITLQALPDGETDILAISNEGRVALIPAEEIPELAK 666 Query: 666 GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRG 725 GKG++ + I LA + +P +T+H GK+K+ +R E + RG +G Sbjct: 667 GKGSQTLAIAKKTYDADGIRLAHILAVPRGRDITLHSGKQKLTIRANEREHYLTPRGHKG 726 Query: 726 T-LMRGLQRIDRVEI 739 L + +RID +E+ Sbjct: 727 NWLPKNYRRIDHIEL 741 >UniRef50_Q1RID9 DNA gyrase subunit A n=218 Tax=Bacteria RepID=GYRA_RICBR Length = 905 Score = 759 bits (1960), Expect = 0.0, Method: Composition-based stats. Identities = 243/843 (28%), Positives = 413/843 (48%), Gaps = 104/843 (12%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 S + + + + +YL+Y+M VI+ RA+P + DGLKPV RRI+Y+M E G +A+ ++ Sbjct: 6 SSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHANRAYR 65 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VGDV+GKYHPHGDSA Y+++V MAQ FS R PLVDGQGN+G+ D + AAMRYT Sbjct: 66 KSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSLDG-DAAAAMRYT 124 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 ESR++K + L+ ++ + T + PN+DG+ +EP +LP+ PN+L+NG+ GIAVGMAT+IP Sbjct: 125 ESRMAKVAHKLIEDIDKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSGGIAVGMATNIP 184 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNL EV A +D + LL++V+GPD+PT II I+ Y GRGS+ + Sbjct: 185 PHNLGEVIDACCLYVDNNDIEILDLLEVVKGPDFPTSG-IILGVNGIKSAYLTGRGSIAI 243 Query: 242 RAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 R + E+ A++I+ +P+ V+ AR++E+IA ++ K++ + DLRDES+ Sbjct: 244 RGRAEIENLGNGRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGIRI 303 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 + + + + + V+N +++ T L+ S+ + + + DG P V NL E+++ ++ FR Sbjct: 304 YIELKK--DIVAEVVLNQIYSCTQLQTSFGVIM-LALKDGLPKVMNLKEVIAAFVSFREV 360 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP---KPALMSR------- 406 + R Y L K + HIL GL +A NIDE+I II+ +P K LM+R Sbjct: 361 VITNRTIYLLNKARDKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMARSWDALNI 420 Query: 407 ------------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQ 448 TE QA+AILE++L+ L +E+ K+ + L E + Sbjct: 421 LPLVKLVDDKAMLNEEGKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNLATEITEYL 480 Query: 449 GILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMG 508 IL S ++ +LK+EL + + R + ++ E + + D++ E + + ++ G Sbjct: 481 NILGSRERLLEILKEELIKVKEEFATPRLTSIEFGEFDQDIE--DLIQREEMVVTVTLGG 538 Query: 509 WVRSAKGHDIDAP--------GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITL 560 +++ A GL+ + D G ++ P++F + G+ Y++ L Sbjct: 539 YIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSLKLYKL 598 Query: 561 P--SARGQGEPLTGKLTLPPGATVDHMLMESDDQ------KLLMASDAGYGFVCTFNDLV 612 P + +G+G P+ L L + +++ ++Q ++ A+ G D Sbjct: 599 PLSNPQGKGRPMVNILPLKGDEHITNIMPLPENQDEWDNLNIMFATAKGNIRRSDLLDFK 658 Query: 613 ARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQL-SKGK-GNK 670 GK I L E+ ++ + + +L T++G+ L FPV L + S+ G + Sbjct: 659 KIQSNGKIAIRLDEDDKLIDVKPCK-EDEHILLATKSGKALRFPVESLRVIKSRTSDGVR 717 Query: 671 IINIPSAEAARGEDGLAQLYVL-------------------------------------- 692 + + ++ L + Sbjct: 718 GMRLAEDDSVISMTVLKGIKATREERDAYLSVSWEKRLEIAKGEEFNSEELGVDLTAESI 777 Query: 693 ----PPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSG 748 + + K ++T +RG G + + D+ + Sbjct: 778 LEMANSEEFILTVTENGFGKRSSAYGYRIT-DRGGSGII--NMDINDKTGLVVGVMPVKM 834 Query: 749 DSE 751 D E Sbjct: 835 DDE 837 Score = 79.6 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 31/273 (11%), Positives = 79/273 (28%), Gaps = 65/273 (23%) Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK------ 526 GD+ + + E + ++ + + G +R + D N K Sbjct: 618 GDEHITNIMPLPENQDEWDNLNIM------FATAKGNIRRSDLLDFKKIQSNGKIAIRLD 671 Query: 527 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHML 586 D K ++ ++ +G++ +L + + + L +V M Sbjct: 672 EDDKLIDVKPCKEDEHILLATKSGKALRFPVESLRVIKSRTSDGVRGMRLAEDDSVISMT 731 Query: 587 MESD------------------------------------------------DQKLLMAS 598 + ++ +L + Sbjct: 732 VLKGIKATREERDAYLSVSWEKRLEIAKGEEFNSEELGVDLTAESILEMANSEEFILTVT 791 Query: 599 DAGYGFVCTFNDLVARNRAGKALITLPENAH---VMPPVVIEDASDMLLAITQAGRMLMF 655 + G+G + +R G +I + N V+ + ++ D L+ IT +G+++ Sbjct: 792 ENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPVK-MDDELMLITNSGKLIRC 850 Query: 656 PVSDLPQLSK-GKGNKIINIPSAEAARGEDGLA 687 + + + G + + E +A Sbjct: 851 KLETVRITGRNTSGVTLFRLDDGEKVVSASLIA 883 >UniRef50_B1ZTK3 DNA gyrase, A subunit n=3 Tax=Verrucomicrobia RepID=B1ZTK3_OPITP Length = 830 Score = 758 bits (1958), Expect = 0.0, Method: Composition-based stats. Identities = 255/779 (32%), Positives = 393/779 (50%), Gaps = 45/779 (5%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 S+ + + + AY++YSM VI+ RALP DGLKPVQRR++YAM GL + F Sbjct: 5 SEKLSSANITDIMQTAYIDYSMSVIISRALPDARDGLKPVQRRVLYAMLREGLLHNRAFD 64 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K A VG+VL YHPHGDS+ Y+ +V MAQP+ RYPL+D QGN+G+ D AA RYT Sbjct: 65 KCAGVVGEVLKNYHPHGDSSVYDTLVRMAQPWVMRYPLIDPQGNFGSVDG-DPAAAYRYT 123 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E RL+ +E LL ++ + T D+ PN+ + EP +LPA LPN+L+NG+TGIAVGM T+IP Sbjct: 124 ECRLNAIAEDLLRDIEEDTVDFAPNYKESTTEPTVLPAALPNLLMNGSTGIAVGMTTNIP 183 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNL E+ A A+ID P+ ++D+L IVQGPD+PT +I R I + G+G VR Sbjct: 184 PHNLAEIIDATCAIIDNPRISVDELCTIVQGPDFPTGG-VIAGREGILSYLKTGKGIVRT 242 Query: 242 RAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 R E+ +V++ +P+ V+ A ++ +IA + +K++ + DLRDESD R Sbjct: 243 RGKAHTEEMKGGMEQIVVTEIPYNVNRATLVTRIAELVGDKQIDGIRDLRDESDENT--R 300 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 +VI + V+N LF T LE S+ + L + RP N+ E++ ++ RR+ Sbjct: 301 IVIELKRGEQS-KVVINQLFQKTALESSFGVTLLALD-KKRPKQMNIKELIECYIEHRRE 358 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQ 413 V RR +RL++ R HILEG ++A N+D+ ++IIR N +E K LM+++ L+E Q Sbjct: 359 VVTRRTRFRLKQAEDRAHILEGYIIALDNLDDFVKIIRASQNREEAKVRLMAKYPLSERQ 418 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 +AILEL+L L LE KI E EL K ++L+GIL SE K+ L+KKEL + Y Sbjct: 419 TDAILELRLYQLTGLERGKIEAEYLELMKLIEELRGILESEPKLLALIKKELAEMKEKYT 478 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK------- 526 RR+ + A D++P+E I +S +G+++ + + K Sbjct: 479 SPRRTEIIAA--AGEFRMEDVIPNEGCVITVSHLGFIKRTPVAEYRSQRRGGKGVIGAET 536 Query: 527 -AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVD 583 D ++ ++F S G+ +A +P +G+ ++ L L G + Sbjct: 537 YEEDFVANLFTASTHDYILFFTSIGQCHAKKVYDIPEGTRASKGKSVSSFLRLAEGEKIA 596 Query: 584 HMLMESD---DQKLLMASDAGYGFVCTFNDLVARNR-AGKALITLPENAHVMPPVVIEDA 639 ML D D+ L+ A+ G +D R G I L E V+ V+ Sbjct: 597 AMLCVKDFAEDRYLVTATKRGIIKKSALSDYANATREGGLIGINLQEADSVIGTVLTTGE 656 Query: 640 SDMLLAITQAGRMLMFPVSD-------LPQLSKGK-GNKIINIPSAEAARGEDGLAQLYV 691 ++ L+ ++ G + F D + G + D L + V Sbjct: 657 NE-LILVSHQGLAVRFRERDPESGEELFRATGRATGGVTGMRFK-----LKSDYLDVIEV 710 Query: 692 LPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDS 750 + ++ + E ++ RG G L +++ D Sbjct: 711 VDHEAKFLVASEAGLGVRTRFEDYRLI-NRGGSGVWAIDLPEDGSIKLAGALSVREDDE 768 Score = 92.3 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 82/227 (36%), Gaps = 18/227 (7%) Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI-------DAPGLNYKAGDSF 531 L E E+ AM + + ++ G ++ + D G+N + DS Sbjct: 588 RLAEGEKIAAMLCVKDFAEDRYLVTATKRGIIKKSALSDYANATREGGLIGINLQEADSV 647 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA----RGQGEPLTGKLTLP---PGATVDH 584 V ++ V G + S R G G + +D Sbjct: 648 IGTVLTTGENELILVSHQGLAVRFRERDPESGEELFRATGRATGGVTGMRFKLKSDYLDV 707 Query: 585 MLMESDDQKLLMASDAGYGFVCTFNDLVARNRAG--KALITLPENAHVMPPVVIE-DASD 641 + + + K L+AS+AG G F D NR G I LPE+ + + D Sbjct: 708 IEVVDHEAKFLVASEAGLGVRTRFEDYRLINRGGSGVWAIDLPEDGSIKLAGALSVREDD 767 Query: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGLA 687 ++ +T G+ + PV D+ + ++G KG +++ + + + Sbjct: 768 EVMLLTAKGQSIRCPVKDIRETNRGAKGVRLVTLEPGDKLLSIARIV 814 >UniRef50_C6HYH3 DNA gyrase, A subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYH3_9BACT Length = 854 Score = 757 bits (1956), Expect = 0.0, Method: Composition-based stats. Identities = 264/771 (34%), Positives = 406/771 (52%), Gaps = 40/771 (5%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 +++ E AYLNYSM VI+ RALP DGLKPVQRR+++AM E+G+ ++KS Sbjct: 11 RETTVSIDEEIRTAYLNYSMSVIVGRALPDARDGLKPVQRRVLFAMHEMGVRPGTAYRKS 70 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VGDV+GKYHPHGD+A Y+ V + QPF+ RYPL+DGQGN+G+ D + AAMRYTE Sbjct: 71 ARIVGDVIGKYHPHGDTAVYDTAVRLVQPFTLRYPLIDGQGNFGSVDG-DAPAAMRYTEI 129 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 RL++ +E +++EL + T DW PN+D +L+EP++LPA LP +LLNG++GIAVGMAT+IPPH Sbjct: 130 RLTRLAEEMMAELDEETVDWSPNYDESLEEPRVLPASLPLLLLNGSSGIAVGMATNIPPH 189 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 N+ EV A + L+D P+ T L+ V GPD+PT I+ R+ I Y GRGS+ MR Sbjct: 190 NITEVLNALLHLMDNPEATDSDLMTFVTGPDFPTGGVIL-GRSGIESAYRTGRGSIVMRG 248 Query: 244 VWKKEDGA------VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 V + ED +VI +P+ V+ AR++E+IA +R KK+ + D+RDESD + + Sbjct: 249 VVEVEDSTRSDRQCLVIREIPYLVNKARLIEKIAELVREKKIEHIADIRDESDRDGMRIV 308 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 V + R +MN LF T L+ S+ N I ++GRP +L + L +L FR+D Sbjct: 309 VELKRE--AIPRIIMNQLFLLTPLQSSFGYNAVSI-VNGRPETLSLSQTLRVFLGFRKDV 365 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQA 414 V RR +RL K +R HILEGL A IDE+I +IR +E + L+S F +E QA Sbjct: 366 VTRRTLFRLRKARERFHILEGLRRAIDLIDEIIALIRRSGSPEEARNGLVSTFAFSELQA 425 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 +AIL+L+L+ L LE KI E E+ L+ ILAS + ++++E + + +GD Sbjct: 426 QAILDLRLQRLTGLEREKIEAEYREVAALIASLEAILASREALLEVIRQETRVLLERFGD 485 Query: 475 DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAK--------GHDIDAPGLNYK 526 RR+ + + ++ ++P EP + LS G+++ G+ K Sbjct: 486 GRRTVIV--PDEGELTPEALIPDEPYIVTLSYEGYIKRMPDAVLPTQRRGGKGRIGVTLK 543 Query: 527 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDH 584 D A + +++ ++F G+ Y + LP A +G+ L L+L P V Sbjct: 544 EDDCLIATLNARAHDTLLFFTDLGKVYRLKTYELPEAQRTARGKHLLSLLSLSPDERVAA 603 Query: 585 MLM---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASD 641 +L D LL + GY ++ + G L E + +V+ Sbjct: 604 ILPVRSFEGDNLLLFGTVKGYFKKTRLSEYANIRQGGLIATVLEEGDRLARVLVLH-PDR 662 Query: 642 MLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI 700 LL T+ G + F ++ + +G + I + +D + + L + Sbjct: 663 RLLVATRGGMSIRFEADNIRPTGRATRGVRAIRLS------PDDSVVSFEEVSDSDLLLV 716 Query: 701 HVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K K L ++ +RG +G + + + + Sbjct: 717 TTEKGFGKRVDTNLFRLQ-KRGGKGVRI--AKVTPETGAVVAILKVTERDD 764 Score = 82.7 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 79/210 (37%), Gaps = 18/210 (8%) Query: 498 EPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGR 551 + + + + G+ + + + + GD + ++ ++ G Sbjct: 613 DNLLLFGTVKGYFKKTRLSEYANIRQGGLIATVLEEGDRLARVLVLHPDRRLLVATRGGM 672 Query: 552 SYAIDPITL-PSARG-QGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFN 609 S + + P+ R +G + L P +V SD LL+ ++ G+G N Sbjct: 673 SIRFEADNIRPTGRATRG---VRAIRLSPDDSVVSFEEVSDSDLLLVTTEKGFGKRVDTN 729 Query: 610 DLVARNRAGK--ALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKG- 666 + R GK + + + ++ D + +T GR++ P ++ ++ +G Sbjct: 730 LFRLQKRGGKGVRIAKVTPETGAVVAILKVTERDDIDVVTDTGRVIRIPSEEIRKVGRGA 789 Query: 667 KGNKIINIPSAEAARGEDGLAQLYVLPPQS 696 KG K++++ ++ + + P + Sbjct: 790 KGVKLVSLSD----SPQETIVCAAINPKRE 815 >UniRef50_C6XJ15 DNA gyrase, A subunit n=28 Tax=Bacteria RepID=C6XJ15_HIRBI Length = 981 Score = 755 bits (1951), Expect = 0.0, Method: Composition-based stats. Identities = 265/859 (30%), Positives = 405/859 (47%), Gaps = 122/859 (14%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 D + + + + +YL+Y+M VI+ RALP + DGLKPV RRI+++MSE G +KK Sbjct: 41 DGVSPINISDEMKKSYLDYAMSVIVSRALPDVRDGLKPVHRRILFSMSEQGYTFDKAYKK 100 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SAR VGDV+GKYHPHGD + Y+A+V MAQ FS PL+DGQGN+G+ D AAMRYTE Sbjct: 101 SARVVGDVIGKYHPHGDQSVYDALVRMAQNFSMGLPLLDGQGNFGSMDG-DPAAAMRYTE 159 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +L K + LL+++ + T ++ N+DG+ +EP +LPAR PN+L+NG GIAVGMAT+IPP Sbjct: 160 VKLKKVANHLLADIDKDTVNFQENYDGSEKEPIVLPARFPNLLVNGGGGIAVGMATNIPP 219 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HNL EV A IA+I+ P + LL+IV GPD+PT A II RA R GRGSV MR Sbjct: 220 HNLGEVIDATIAMIEDPNIDDEALLEIVPGPDFPTGALII-GRAGSRSGLMTGRGSVIMR 278 Query: 243 AVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 + E+ A+V + +P+QV+ A ++E+IA +R+K++ + D+RDESD + + Sbjct: 279 SKSSIEELKNGREALVFTEIPYQVNKASMIEKIAELVRDKRIEGIADMRDESDRDGVRVV 338 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 V V R + V+N LF T L+ S+ +N+ + GRP + +L IL +++FR + Sbjct: 339 VEVKR--DASPEVVLNQLFRYTQLQTSFGMNMLALNS-GRPELLSLKAILQAFIIFREEV 395 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP---KPALMSR-------- 406 V RR + L K R H+L GL +A NIDEVI+IIR+ +P + LM R Sbjct: 396 VARRTKFELNKARARAHLLVGLALAVANIDEVIKIIRHSPDPSTAREKLMDRAWPAQDML 455 Query: 407 ------------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQ 448 L+E QA AIL+L+L+ L L +I E L Sbjct: 456 SLINLIADRRTVANEVGEIRLSEEQARAILDLRLQRLTGLGRDEIGDEARGLADRIADYL 515 Query: 449 GILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMG 508 IL+S ++ ++ +EL+ + + RRS E E M + + E + ++ + G Sbjct: 516 DILSSRPRVMEIITEELRVVREEFAIPRRSQFIEAE--LDMDDEAFIEKEDMVVMFTHGG 573 Query: 509 WVRSAKGHDIDAPG--------LNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITL 560 + + + K D+ ++ V+F STG Y + Sbjct: 574 YAKRTALSIYRTQHRGGRGRSGMGTKEEDAVTRFFVANTHTEVLFFSSTGMVYKTKVWRM 633 Query: 561 P--SARGQGEPLTGKLTLPPGATVDHMLMESDDQ------KLLMASDAGYGFVCTFNDLV 612 P + + +G+ L L L G T+ ++ +D+ +L A+ +G +D Sbjct: 634 PLGTPQSRGKALVNLLPLDKGETITSVMPLPEDEEERANMNILFATRSGGVRRNKLSDFT 693 Query: 613 ARNRAGKALITLPE------NAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQ-LSK 665 NR GK + L E + ++ I D ++ T G+ + F V D+ + Sbjct: 694 QVNRNGKIAMKLDEAQVAGSDDGIVGVQ-ICSPDDDVMLTTALGQCIRFKVEDVRVFTGR 752 Query: 666 GK-GNKIINIPSAEAARGEDGLAQLYVLPP------------------------------ 694 G + I + + + L + + P Sbjct: 753 TSTGVRGIRLANGDEVISMLVLRHMDITSPEARAYLKHASAMRRALGEEEGDTEIDVVSE 812 Query: 695 -----------------------QSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGL 731 + L K +VTG RG +G + L Sbjct: 813 PDADDEGDEAALSPERIAELGAAEEFLLTITEDGMGKRASAYDYRVTG-RGGKGLIAHKL 871 Query: 732 QRIDRVEIDSPRRASSGDS 750 R+ P GD Sbjct: 872 NAGRRLAAAFPIE--DGDE 888 Score = 70.3 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 79/284 (27%), Gaps = 81/284 (28%) Query: 478 SPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK----------- 526 + + E + + + + ++ G VR K D N K Sbjct: 658 TSVMPLPEDEEERANMNI------LFATRSGGVRRNKLSDFTQVNRNGKIAMKLDEAQVA 711 Query: 527 -AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITL------------------------- 560 + D + V+ + G+ + Sbjct: 712 GSDDGIVGVQICSPDDDVMLTTALGQCIRFKVEDVRVFTGRTSTGVRGIRLANGDEVISM 771 Query: 561 ----------PSARGQGEPLTGK---LTLPPGATVDHMLMESD----------------- 590 P AR + + L G T ++ E D Sbjct: 772 LVLRHMDITSPEARAYLKHASAMRRALGEEEGDTEIDVVSEPDADDEGDEAALSPERIAE 831 Query: 591 ----DQKLLMASDAGYGFVCTFNDLVARNRAGKALI--TLPENAHVMPPVVIEDASDMLL 644 ++ LL ++ G G + D R GK LI L + IED D ++ Sbjct: 832 LGAAEEFLLTITEDGMGKRASAYDYRVTGRGGKGLIAHKLNAGRRLAAAFPIEDG-DEIM 890 Query: 645 AITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGLA 687 +T AG+++ P + + +G K++ E + LA Sbjct: 891 LVTDAGQLIRTPAKQIRIAGRATQGVKVLRTSGEERVVSVERLA 934 Score = 42.6 bits (99), Expect = 0.056, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 40/148 (27%), Gaps = 11/148 (7%) Query: 605 VCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS 664 + R+ L + + DM++ T G +S Sbjct: 533 RVVREEFAIPRRSQFIEAELDMDDE-----AFIEKEDMVVMFTHGGYAKRTALSIYRTQH 587 Query: 665 KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRR 724 + S + ED + + +V + + + + + R Sbjct: 588 -----RGGRGRSGMGTKEEDAVTRFFVANTHTEVLFFSSTGMVYKTKVWRMPLGTPQ-SR 641 Query: 725 GTLMRGLQRIDRVEIDSPRRASSGDSEE 752 G + L +D+ E + D EE Sbjct: 642 GKALVNLLPLDKGETITSVMPLPEDEEE 669 >UniRef50_P35810 DNA gyrase subunit A n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=GYRA_FIBSS Length = 903 Score = 754 bits (1948), Expect = 0.0, Method: Composition-based stats. Identities = 254/814 (31%), Positives = 404/814 (49%), Gaps = 89/814 (10%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 + + ++ YL YSM VI+ RALP DG KPV RR++Y+M +LG+ + KSAR VGD Sbjct: 15 VEQDMQDCYLRYSMSVIVARALPDARDGFKPVHRRVMYSMHKLGVVPNKGTVKSARIVGD 74 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 V+GKYHPHGD A Y+ + MAQ FS RYPLV GQGN+G+ D S AAMRYTE++++ Sbjct: 75 VIGKYHPHGDVAVYDTLARMAQDFSLRYPLVFGQGNFGSIDG-DSPAAMRYTEAKMNNLG 133 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 L+L +L + T D PN+D +L+EP +LP+ LPN+++NGT+GIAVGMAT++ PHNLREV Sbjct: 134 ALMLEDLEKETVDMGPNYDESLEEPLVLPSALPNMIVNGTSGIAVGMATNMAPHNLREVG 193 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED 249 A AL + P T + L++ V+GPD+PT A I+ R+ IR+ Y G G VR+RA + E Sbjct: 194 AAIHALAENPDLTGEDLMEYVKGPDFPTGA-IVCGRSGIREAYLTGHGRVRVRARTEIET 252 Query: 250 G-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 ++++ +P+ V+ A + ++IA +R+K++ + D+RDES + R+VI R + Sbjct: 253 DAKGKPRIIVTEIPYMVNKAELCKKIADLVRDKRIDGITDIRDESSRD--IRIVIELRRD 310 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 364 V + V+N+LF T L+ ++ I N+ ++ P + L ++L ++ R D + R + Sbjct: 311 AVG-EVVLNNLFKYTQLQTTFSI-YNLALVNNLPKLLTLKDLLQVYIDHRLDVITRATQF 368 Query: 365 RLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAEAILELK 421 L+K RLHI+EGL +A NIDEV++IIR K +L RF L E Q++AI++++ Sbjct: 369 DLKKAAARLHIIEGLRIATQNIDEVVKIIRQSKTTEIAKQSLQDRFSLDEIQSQAIVDMR 428 Query: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQ 481 L L L K+ E +EL L+ IL + ++ ++L A YGD+RR+ + Sbjct: 429 LAQLVGLNIEKLEAEYNELIATVADLKDILEKRERRVAIMLQKLDAVVDKYGDERRTTIG 488 Query: 482 EREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GLNYKAGDSFKA 533 E + + D++ E I LS+ G++R A G K D+ + Sbjct: 489 EAIDDSD--DEDLIAEEEQVITLSKEGYIRRLPIDTFKAQNRGGKGIIGAGLKDEDNVEQ 546 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLMES-- 589 ++ ++ + GR Y LP G+G P+ + L G V ++ Sbjct: 547 IFTASTHSYLLVFTNKGRVYWTKVYRLPEGARNGKGRPIVNFVALTEGEKVQAIVPVRKF 606 Query: 590 -DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVI------------ 636 L+ A+ G +AG I+L E+ ++ ++ Sbjct: 607 GGYFCLVFATKKGIINKMDLTLFSRPRKAGVNAISLDEDDELVKVQLVGMSAEEYEASKN 666 Query: 637 --------------------------------------EDASDMLLAITQAGRMLMFPVS 658 D+L+ T+ G+ + FP+S Sbjct: 667 ASDDDSAEAVENAAEAQAAEAAIAEESESGDAEDFANRPIPKDLLMIATKNGQAVTFPIS 726 Query: 659 DLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKV 717 + +G G K I + D + L L + + K K +V Sbjct: 727 CFRAMGRGTHGVKGITLAEG------DEVISLLWLKAGNKILTITEKGYGKRSEPGSYRV 780 Query: 718 TGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 T RG +G R L D++ + + D + Sbjct: 781 T-RRGSKGV--RNLNVTDKIGAAVFVESVADDYD 811 Score = 88.4 bits (218), Expect = 8e-16, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 4/173 (2%) Query: 527 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHML 586 +GD+ A + ++ G++ + G+G +TL G V +L Sbjct: 695 SGDAEDFANRPIPKDLLMIATKNGQAVTFPISCFRAM-GRGTHGVKGITLAEGDEVISLL 753 Query: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASD--MLL 644 K+L ++ GYG R K + L + V +E +D L+ Sbjct: 754 WLKAGNKILTITEKGYGKRSEPGSYRVTRRGSKGVRNLNVTDKIGAAVFVESVADDYDLI 813 Query: 645 AITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQS 696 ++ G+++ +D+ + +G K I + + + L + + S Sbjct: 814 ITSKDGQVIRIKAADIRLTGRNAQGVKAITLRDGDVVKDATALPSVEDIEQDS 866 >UniRef50_B4W7D2 DNA topoisomerase IV, A subunit n=1 Tax=Brevundimonas sp. BAL3 RepID=B4W7D2_9CAUL Length = 737 Score = 754 bits (1948), Expect = 0.0, Method: Composition-based stats. Identities = 284/738 (38%), Positives = 430/738 (58%), Gaps = 22/738 (2%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + YL Y++ I +RALP + DG KPV RRI+YAM ++ LN A +K Sbjct: 12 RIIDEPMETALSRRYLAYALSTITNRALPDVRDGFKPVHRRILYAMHQMRLNPQAAARKC 71 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 A+ VG+V+G YHPHGD++ YEA+V +AQ F+ RYPLVDGQGN+G D S AAMRYTE Sbjct: 72 AKVVGEVMGGYHPHGDASIYEALVRLAQDFAQRYPLVDGQGNFGNIDG-DSAAAMRYTEC 130 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 +L+ + LLL + Q + D+ +D +EP +LPA PN+L NG++GIAVGMAT IPPH Sbjct: 131 KLTPAAVLLLDGIDQDSVDFRATYDDQDEEPVVLPAGFPNLLANGSSGIAVGMATSIPPH 190 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 N+ E+ A L+D+P+ T +L+ +V GPD+PT + A I YE GRG VR+RA Sbjct: 191 NVGELIDACQMLLDRPEATTAELVQLVPGPDFPTGGVAVEGHASILDAYETGRGGVRLRA 250 Query: 244 VWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 W+ ED ++++ +P+QV +R++E +A + +KK P++ D+RDES + RL+ Sbjct: 251 RWETEDLGRGVWRIIVTEMPYQVQKSRLIEALADLIEHKKAPLLGDVRDESAED--IRLI 308 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + P++ ++ + +M LF +DLE + IN+N++ DG P V L L +L RR+ + Sbjct: 309 LEPKNRTIEPEMLMESLFKLSDLEVRFPINMNVLDADGTPRVMGLKACLRAFLDHRREVL 368 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAIL 418 RR +R+ +V KRLH+LEGL + FLNIDEVI I+R E++PK L++RFGLTE QA+ IL Sbjct: 369 NRRSQWRIARVEKRLHLLEGLRIVFLNIDEVIRIVREEEQPKAVLIARFGLTEVQADFIL 428 Query: 419 ELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRS 478 + +LR LA+LEEM I E L +E LQ + +SE K + KEL+A +A RR+ Sbjct: 429 DTRLRQLARLEEMTIEKEFKALSEELAHLQALTSSEGKQWKAISKELEAVRKALISPRRT 488 Query: 479 PLQEREEAKA-MSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKG 537 + + + A ++ +P E +T++LS+ GW+R+AKG D L +K GD V Sbjct: 489 TIADAVDTSAFVAPEAFIPREAITVILSERGWIRAAKGKVEDPSELKFKEGDQLAYLVPA 548 Query: 538 KSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMA 597 + ++ S GR + I L S RG GEPL + L A + ++L KLL+A Sbjct: 549 YTTDKLLVGASDGRIFTIGADKLASGRGHGEPLRLMIDLDEKAEIINVLAHQPGGKLLIA 608 Query: 598 SDAGYGFVCTFNDLVARNRAGKALITLPENAHV-MPPVVIEDASDMLLAITQAGRMLMFP 656 S AGYGF+ +D +A+ R GK ++ + M + +D + I + + L+FP Sbjct: 609 SKAGYGFIAPEDDTLAQKRGGKQVLN---GDMLAMLRIPQTPTADHVATIGENIKTLIFP 665 Query: 657 VSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQK 716 + +LP++ +GKG ++ N GLA + V + G + + + + Sbjct: 666 LDELPEMGRGKGVRLQNFKQG-------GLADVTVFNAEQGPEWADGGGR-RRNWPDWKD 717 Query: 717 VTGERGRRGT-LMRGLQR 733 G+R G RGL++ Sbjct: 718 WLGKRAGAGRQGPRGLRK 735 >UniRef50_C5SLW9 DNA topoisomerase IV, A subunit n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SLW9_9CAUL Length = 738 Score = 754 bits (1947), Expect = 0.0, Method: Composition-based stats. Identities = 284/737 (38%), Positives = 434/737 (58%), Gaps = 21/737 (2%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + E YL Y++ IM RALP + DGLKPV RR++YAM + LN A +KS Sbjct: 12 RILSEPMGEALSRRYLAYALSTIMHRALPDVRDGLKPVHRRVLYAMHNMRLNPQAAARKS 71 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 A+ VG+V+G +HPHGD + Y+A+V MAQ F+ RYP+VDGQGN+G D S AAMRYTE Sbjct: 72 AKVVGEVMGNFHPHGDQSIYDALVRMAQWFAQRYPMVDGQGNFGNIDG-DSAAAMRYTEC 130 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 +++ + LLL + + D+ P +DG +EP +LPA PN+L NG TGIAVGMAT IPPH Sbjct: 131 KMTTAAMLLLDGIDENAVDFRPTYDGQDEEPVVLPAAFPNLLANGATGIAVGMATSIPPH 190 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 N+ E+ A LI +P T + L+ I+ GPD+PT + R I + YE GRGSVR+RA Sbjct: 191 NVAELIDACKLLIAEPNTDTNGLMAIIPGPDFPTGGICVERREAIYEAYETGRGSVRVRA 250 Query: 244 VWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 ++ ED +++S +P+QV +R++EQ+A + KK P++ D+RDESD E RL+ Sbjct: 251 RYEVEDLGRGAWRILVSEIPYQVQKSRLIEQLADLIEAKKAPLLGDVRDESDEE--VRLI 308 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + P++ +D + +M LF +DLE + N+N++ G P V L IL+ +L RR+ + Sbjct: 309 LEPKTRNIDPEVLMESLFKISDLETRFAFNMNVLDKTGTPRVMGLKTILTSFLDHRREVL 368 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAIL 418 R+ +RL+K+ KRLH+L+GL++AFLN+DEVI IIR ++ PK LM+RF LTE Q + IL Sbjct: 369 IRQSQWRLDKIEKRLHVLDGLMIAFLNLDEVIRIIREDETPKQTLMARFELTEVQVDYIL 428 Query: 419 ELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRS 478 + +LR LA+LEEM I+GE +L KERD L +L SE+K + ++L + RR+ Sbjct: 429 DTRLRQLARLEEMAIKGEHDKLSKERDGLLSLLGSEKKQWKRIDEQLTEVRKQLLSARRT 488 Query: 479 PLQEREEAKAMSEHD-MLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKG 537 E + ++ + LP E +T++LS+ GW+R+ KG D L +K GD+ V G Sbjct: 489 TFAEAPQGVEVAAIESYLPKEALTVILSERGWIRATKGRVDDPSELKFKEGDNLGFLVPG 548 Query: 538 KSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMA 597 + ++ + S GR + + LPS RG GEPL L + + ++ M + K LM Sbjct: 549 YNTDKLLIMTSDGRFFTLGCDKLPSGRGHGEPLQLMLEMEENTRIVNVFMFTPGAKRLMV 608 Query: 598 SDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPV 657 S GYGFV D V +AGK+++ + + + D ++ + + ++L++PV Sbjct: 609 SKNGYGFVMNEEDAVGNKKAGKSVLN-ADGTEAFVALPVTG--DHVVILGENNKVLVYPV 665 Query: 658 SDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKV 717 S+LP++++GKG K+ G+ + + + G K ++ + Sbjct: 666 SELPEMARGKGVKLQGYKDG-------GVKDIAIFDQAGPVQWFDGSGKA-RDFKDWKDF 717 Query: 718 TGERGRRGTL-MRGLQR 733 G+R G + RGL++ Sbjct: 718 VGKRASVGKMAPRGLRK 734 >UniRef50_P57277 DNA gyrase subunit A n=76 Tax=Proteobacteria RepID=GYRA_BUCAI Length = 830 Score = 752 bits (1943), Expect = 0.0, Method: Composition-based stats. Identities = 255/787 (32%), Positives = 418/787 (53%), Gaps = 54/787 (6%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 S ++ + E +++YL+YSM VI+ RALP + DGLKPV RRI++AM L + + +K Sbjct: 5 SREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWNKAYK 64 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VGDV+GKYHPHGDSA Y+A+V MAQ FS RY L+DGQGN+G+ D S AAMRYT Sbjct: 65 KSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDG-DSAAAMRYT 123 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E R+SK + LL++L + T +++PN+DGT P++LPA++PN+L+NG++GIAVGMAT+IP Sbjct: 124 EVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMATNIP 183 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNL EV +A ID TL++L+ + GPD+PT A II ++ I + Y G+G + + Sbjct: 184 PHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAA-IINGKSGIEEAYRTGKGKIYI 242 Query: 242 RAVWKK------EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 RA + + ++V + +P+QV+ +R++E+IA ++ K++ + LRDESD + Sbjct: 243 RAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDGMR 302 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 ++ + R + ++N L++ T L+ S+ IN+ + G+P +L EIL +L R+ Sbjct: 303 IVIEIKRE--AIAEVILNQLYSLTQLQISFGINM-VALCQGQPKTLSLKEILKNFLSHRQ 359 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLN--------------ID-EVIEIIRNEDEPK 400 + + RR + L KV R+HILEGL +A +N ID + I I +N K Sbjct: 360 EIIIRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNWKSEK 419 Query: 401 P---ALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKM 457 A + +E QA+AIL+L+L + LE+ KI E ++L K+ +L+ IL + +KM Sbjct: 420 INYLAKKHEYYFSEKQAQAILDLRLHKITNLEQEKIIMEHNDLIKKTKELKEILENPKKM 479 Query: 458 NNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHD 517 ++K EL + + D RR+ + E ++ D++ E V + LS G+V+ D Sbjct: 480 FEVIKSELLSIQNNFSDKRRTKITENH--SDINMEDLINQEDVVVTLSHSGYVKYQPLSD 537 Query: 518 IDAP--------GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQG 567 +A K D ++ V ++ ++ S G Y + LP + +G Sbjct: 538 YNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSSRGILYWMKVYQLPESSRHARG 597 Query: 568 EPLTGKLTLPPGATVDHMLM---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL 624 P+ L L P + +L D+ + M + G + + AG I L Sbjct: 598 RPIVNLLPLSPKERITAILPVHKYQDNLNIFMTTAHGIVKKSSLSQFKKPRFAGIIAINL 657 Query: 625 PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGE 683 N ++ + D ++ ++ TQ G+++ F + + + + G K I I Sbjct: 658 HANDELIGVAL-TDGNNNIMLFTQNGKVVQFLENSVRTMGRTASGVKGIKIKKN------ 710 Query: 684 DGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPR 743 D + L V + ++ I K + R +G + + + + +I Sbjct: 711 DKVVSLIVPKNKGSILIATKNGYGKRTKISDFPIK-SRATQGVISIKITKKN-GKIIGAI 768 Query: 744 RASSGDS 750 + D Sbjct: 769 QVIEKDQ 775 Score = 85.7 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 77/228 (33%), Gaps = 16/228 (7%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKA 533 L +E A+ + + G V+ + +N A D Sbjct: 606 LSPKERITAILPVHKYQDNLNIFMTTAHGIVKKSSLSQFKKPRFAGIIAINLHANDELIG 665 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLMESDD 591 N ++ G+ S R G +G + + V +++ + Sbjct: 666 VALTDGNNNIMLFTQNGKVVQFLEN---SVRTMGRTASGVKGIKIKKNDKVVSLIVPKNK 722 Query: 592 QKLLMASDAGYGFVCTFNDLVARNRA--GKALITL-PENAHVMPPVVIEDASDMLLAITQ 648 +L+A+ GYG +D ++RA G I + +N ++ + + D ++ IT Sbjct: 723 GSILIATKNGYGKRTKISDFPIKSRATQGVISIKITKKNGKIIGAIQVI-EKDQIMMITD 781 Query: 649 AGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQ 695 AG ++ VS++ L + +G +I E + + Sbjct: 782 AGTLVRIRVSEVGVLKRNTQGVILIRTSKNEKVVALQKIVDPMIEKID 829 >UniRef50_Q2JY71 Type II DNA topoisomerase, A subunit n=10 Tax=Cyanobacteria RepID=Q2JY71_SYNJA Length = 849 Score = 752 bits (1943), Expect = 0.0, Method: Composition-based stats. Identities = 248/779 (31%), Positives = 395/779 (50%), Gaps = 53/779 (6%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 L + +YL Y+M VI+ RALP + DGLKPV RRI+YAM ELGL ++K AR V Sbjct: 26 TDLQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCARVV 85 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 GDVLGKYHPHGD A Y+A+V MAQ FS RYPLV G GN+G+ D AAMRYTE RL++ Sbjct: 86 GDVLGKYHPHGDQAVYDALVRMAQDFSSRYPLVAGHGNFGSVD-DDPPAAMRYTECRLAE 144 Query: 128 YSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 S LL + + D++PNFDG+ EP +LPARLP +LLNG+ GIAVGMAT+IPPHNL Sbjct: 145 LSHTALLQGISEAIVDFMPNFDGSQAEPTVLPARLPILLLNGSAGIAVGMATNIPPHNLG 204 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 EV +ALID+P + ++LL + GPD+PT +I+ + IR+ Y GRGS+ +R V + Sbjct: 205 EVVDGLLALIDEPDLSPEELLRWIPGPDFPTGGQIVDGQ-GIREAYLTGRGSITLRGVAR 263 Query: 247 KEDGA----------VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 E+ ++IS P+QV+ A LE++A + +L + DLRDESD Sbjct: 264 FEEIQPGRGRHRRPALIISEFPYQVNKAAWLEKVAELVAQDRLSGIADLRDESDRSGMRV 323 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 +V + R + V+ L+ T L+ ++ + + + ++G+P +L +IL +L FR Sbjct: 324 VVELKRE--ANPQAVLQQLYKLTPLQSTFGV-ILLALVEGKPQQLSLKQILQHFLQFREA 380 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQ 413 T++R L++V ++ + G+++A +++ VI+++R + K L +R G T Q Sbjct: 381 TLKRMFRAELQQVQRKAEEVAGMVLALADLEGVIDLLRQAPDSATAKAQLQTRLGCTSQQ 440 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 AE IL + LR L LE ++ EQ+EL+ +LQG+L RK+ N LKKEL+ + + Sbjct: 441 AETILAMPLRRLTTLERERLYQEQAELQARIAELQGLLQDRRKLLNYLKKELRHLKKTFA 500 Query: 474 DDRRSPLQEREEAKAMSEH----DMLPSEPVTIVLSQMGWVRSAK---GHDIDAPGLNYK 526 D RR+ + E +A + + + L++ G+VR P Sbjct: 501 DPRRTQILSASELEAEAAQIPGGEAGEDSRFLLQLTRKGYVRRLPLPGPRSRSNPAQREL 560 Query: 527 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDH 584 D+ + Q ++ + ++GR++ + +P + +G PL LP + Sbjct: 561 GEDTLVSLECVTPEQAILVLTASGRAFTVPIEGIPLSTGSSRGVPLVTL--LPNPEPIVA 618 Query: 585 MLMESD-----------DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPP 633 + L++ S G +LV ++ G A++ L E + Sbjct: 619 AFPLDPVRVSGAEHSPGEASLVVLSRQGRIKRVALAELVGLSQRGAAVLKLKEGDELGWA 678 Query: 634 VVIEDASD--MLLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLY 690 + ++ T GR+L +P + + G+ + + + + + Sbjct: 679 ALWHPGHQGYSVVLATSGGRVLRLDAEQIPLMGRAAMGSPALRLG------RTEQIVGMA 732 Query: 691 VLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGD 749 +LPPQ L + +K P + E+G+ G ++ + D Sbjct: 733 LLPPQGILVLASRSGYLKRLPLGEIPIL-EQGKVGV--SAFHFSNKGDGLVGLVGFPPD 788 Score = 69.9 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 39/205 (19%), Positives = 67/205 (32%), Gaps = 28/205 (13%) Query: 496 PSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAV---KGKSNQPVVFV 546 P E +VLS+ G ++ ++ A L K GD A G VV Sbjct: 634 PGEASLVVLSRQGRIKRVALAELVGLSQRGAAVLKLKEGDELGWAALWHPGHQGYSVVLA 693 Query: 547 DSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGF 604 S GR +D +P G P L L + M + L++AS +GY Sbjct: 694 TSGGRVLRLDAEQIPLMGRAAMGSPA---LRLGRTEQIVGMALLPPQGILVLASRSGYLK 750 Query: 605 VCTFNDLVARNRAGKALITL----PENAHVMPPVVIEDASD-----MLLAITQAGRMLMF 655 + + GK ++ + ++ V + I ++ R+ F Sbjct: 751 RLPLGE-IPILEQGKVGVSAFHFSNKGDGLVGLVGFPPDLAAHPHLQVDVIAESERVHSF 809 Query: 656 PVSDLPQLSKGKG----NKIINIPS 676 ++P + G K + Sbjct: 810 SPEEIPLQGRSGGGSLLVKGEQVRE 834 >UniRef50_Q2JQA2 Type II DNA topoisomerase, A subunit n=2 Tax=Chroococcales RepID=Q2JQA2_SYNJB Length = 819 Score = 752 bits (1943), Expect = 0.0, Method: Composition-based stats. Identities = 245/773 (31%), Positives = 388/773 (50%), Gaps = 45/773 (5%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 L + +YL Y+M VI+ RALP + DGLKPV RRI+YAM ELGL ++K AR V Sbjct: 4 TDLQGEMQRSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLTPDRPYRKCARVV 63 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 GDVLGKYHPHGD A Y+A+V M Q FS RYPLV G GN+G+ D AAMRYTE RL++ Sbjct: 64 GDVLGKYHPHGDQAVYDALVRMVQDFSSRYPLVAGHGNFGSVD-DDPPAAMRYTECRLAE 122 Query: 128 YSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 S LL ++ + D++PNFDG+ EP +LPARLP +LLNG++GIAVGMAT+IPPHNL Sbjct: 123 LSHTALLEQVSEEIVDFMPNFDGSQAEPTVLPARLPILLLNGSSGIAVGMATNIPPHNLG 182 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 EV +ALID P + ++LL + GPD+PT +I+ ++ IR Y GRGS+ +R V + Sbjct: 183 EVVDGLLALIDHPDLSPEELLRWIPGPDFPTGGQILDTQ-GIRAAYLTGRGSITLRGVAR 241 Query: 247 KEDGA----------VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 E+ +VIS P+QV+ A +E++A ++ + DLRDESD Sbjct: 242 FEEIQPGKGRHRRPALVISEFPYQVNKAAWIEKVAELANQDRISGIADLRDESDRSGIRV 301 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 +V + R + V+ L+ T L+ ++ + + ++G P +L EIL +L FR Sbjct: 302 VVELKRE--ANPQAVLQQLYKLTPLQSNFGA-ILLALVNGEPRQLSLKEILQHFLQFREA 358 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQ 413 T+ R L++V ++ + G+L+A +++ VIE++R + K L +R G T Q Sbjct: 359 TLNRMFRAELQQVQRKAEEVAGMLLALADLEGVIELLRQAPDGTTAKAQLQTRLGCTPQQ 418 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 AE IL + LR L LE ++ E ++L+ ++LQG+L+ RK+ N LKKEL+ + +G Sbjct: 419 AETILAMPLRRLTGLERERLHQEHAQLQTRIEELQGLLSDRRKLLNYLKKELRHLKKTFG 478 Query: 474 DDRRSPL----QEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAK---GHDIDAPGLNYK 526 D RR+ + + E + + + ++ G+VR P Sbjct: 479 DPRRTQILSASELEAEVAQIPSGEETEETHFLLQFTRKGYVRRLPLPSRRSRSNPAQREL 538 Query: 527 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDH 584 D Q ++ + + G+++ + +P + +G PL L + Sbjct: 539 GEDVLVGLECVTLEQEILVLTAGGKAFTLPIAGIPLSTGSSRGVPLVTLLP--NPEPIVA 596 Query: 585 MLMESDDQ---KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASD 641 D L++ S G +L+ + G ++ L E + + + Sbjct: 597 TFTLDPDPGKASLVVLSRQGRIKRLALAELMGLTQRGSTVLKLKEGDELGWAALWDPDHQ 656 Query: 642 --MLLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTL 698 ++ T GR+L V +P + + G+ + + + + + ++P Q L Sbjct: 657 GYSVVLATSGGRVLRLDVQQIPLMGRAAMGSPALRLG------RTERIVGMALVPSQGIL 710 Query: 699 TIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 + +K E + ERG+ G DR ++ + E Sbjct: 711 VLASRLGYLKRLSLEEIPIL-ERGQVG--APAFHFSDRGDVLVGLVGLPPELE 760 Score = 76.9 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 79/227 (34%), Gaps = 26/227 (11%) Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYK 526 G + L E A D P + +VLS+ G ++ ++ + L K Sbjct: 581 GVPLVTLLPNPEPIVATFTLDPDPGKASLVVLSRQGRIKRLALAELMGLTQRGSTVLKLK 640 Query: 527 AGDSFK-AAVKGKSNQ--PVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGAT 581 GD AA+ +Q VV S GR +D +P G P L L Sbjct: 641 EGDELGWAALWDPDHQGYSVVLATSGGRVLRLDVQQIPLMGRAAMGSPA---LRLGRTER 697 Query: 582 VDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRA--GKALITLPE-NAHVMPPVVIED 638 + M + L++AS GY + ++ R G + ++ V + Sbjct: 698 IVGMALVPSQGILVLASRLGYLKRLSLEEIPILERGQVGAPAFHFSDRGDVLVGLVGLPP 757 Query: 639 ASD-----MLLAITQAGRMLMFPVSDLPQLSKGKG----NKIINIPS 676 + L IT++ ++ F +++P S+ G K + Sbjct: 758 ELERPSHLQLDVITESEQVYSFSPAEIPLQSRSGGGSLLVKGERVRE 804 >UniRef50_Q45066 DNA topoisomerase 4 subunit A n=136 Tax=Firmicutes RepID=PARC_BACSU Length = 806 Score = 750 bits (1938), Expect = 0.0, Method: Composition-based stats. Identities = 226/751 (30%), Positives = 386/751 (51%), Gaps = 32/751 (4%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 ++ L L E + + YS Y+I DRALP DGLKPVQRRI+YAM G F+K Sbjct: 5 ELFHDLPLEEVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMHTDGNTFDKNFRK 64 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 +A+TVG+V+G YHPHGDS+ YEAMV M+Q + R L++ GN G+ D AAMRYTE Sbjct: 65 AAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNVLIEMHGNNGSIDGDPP-AAMRYTE 123 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +RLS + LL ++ + T ++VPNFD T +EP +LPA PN+L+NG+TGI+ G ATDIPP Sbjct: 124 ARLSPIASELLRDIDKNTVEFVPNFDDTSKEPVVLPAMFPNLLVNGSTGISAGYATDIPP 183 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 H+L EV A I I P ++D+L+++++GPD+PT II IRK YE G+G + +R Sbjct: 184 HHLGEVIDAVIKRIQMPSCSVDELMEVIKGPDFPTGG-IIQGVDGIRKAYETGKGKIIIR 242 Query: 243 AVWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 + E +VI+ +P +V+ A +++++ +KK+ + ++RDE+D + Sbjct: 243 GKAEIETIRGGREQIVITEIPFEVNKANLVKKMDEFRIDKKVEGISEVRDETDRTGLRVV 302 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 + + + D ++N L+ TDL+ +Y N+ I + RP + +L IL ++ +++ Sbjct: 303 IELKKE--ADAKGILNFLYKNTDLQITYNFNMVAI-HNRRPMLMSLPSILDAYIGHQKEV 359 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQA 414 V R Y L+K R HI+EGL+ A +DEVI IR ++ + K L++++ TE QA Sbjct: 360 VTNRSVYELQKAKDRHHIVEGLMKALSILDEVIATIRSSSDKRDAKNNLIAKYEFTEPQA 419 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 EAI+ L+L L + ++ E EL K+ ++L+ IL++++K+ ++ L+A + Y D Sbjct: 420 EAIVSLQLYRLTNTDITALKEEAEELGKKIEELESILSNDKKLLKVITNSLKALKKKYAD 479 Query: 475 DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI---DAPGLNYKAGDSF 531 RRS ++E+ E ++ M+ SE V + +++ G+++ + K D Sbjct: 480 TRRSVIEEKIEEIKINLEVMVASEDVYVTVTKDGYLKRTSQRSFAASNGQDFGMKDTDRM 539 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLM-- 587 + + ++ + G LP R + G+ + +T+ T+ + Sbjct: 540 LHQFEMNTTDVLLLFTNKGSYIYCPVHQLPDIRWKDMGQHFSNLITIDRDETIVKAIPIK 599 Query: 588 -ESDDQKLLMASDAGYGFVCTFNDLVARN-RAGKALITLPENAHVMPPVVIEDASDMLLA 645 LL + G A+ + L ++ + + + Sbjct: 600 EFDPSAYLLFFTKNGMVKKTELTHYKAQRYSKALVALNLKGEDELIDVH-VTNGESQIFM 658 Query: 646 ITQAGRMLMFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGK 704 T G L F ++ + + G K IN+ +D + +L ++ + + Sbjct: 659 ATHLGYGLWFGEDEVNVVGARAAGVKGINLKE------DDFVVSGEILQQSDSIVLFTQR 712 Query: 705 RKIKLRPEELQKVTGERGRRG-TLMRGLQRI 734 +K + R +RG ++R L++ Sbjct: 713 GAVKRMSLSEFE-KTSRAKRGVVMLRELKKN 742 >UniRef50_Q5YLB5 DNA gyrase subunit A, chloroplastic/mitochondrial n=14 Tax=cellular organisms RepID=GYRA_NICBE Length = 935 Score = 750 bits (1937), Expect = 0.0, Method: Composition-based stats. Identities = 254/791 (32%), Positives = 404/791 (51%), Gaps = 48/791 (6%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 + LH+ AY++Y+M V++ RALP + DGLKPV RRI+YAM ELGL++ +K Sbjct: 87 GERVVLTELHKEATEAYMSYAMSVLLGRALPDVRDGLKPVHRRILYAMHELGLSSKKPYK 146 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K AR VG+VLGK+HPHGD+A Y+++V MAQ FS R PL+ G GN+G+ D AAMRYT Sbjct: 147 KCARVVGEVLGKFHPHGDTAVYDSLVRMAQDFSLRSPLIRGHGNFGSIDA-DPPAAMRYT 205 Query: 122 ESRLSKYSELL-LSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 E RL +E + L++L Q T D+VPNFD + +EP +LPAR+PN+LLNG +GIAVGMAT+I Sbjct: 206 ECRLEALTESMLLADLEQNTVDFVPNFDNSQKEPSLLPARVPNLLLNGASGIAVGMATNI 265 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL E+ A ALI P+ TL +LL+ + GPD+PT I+ + + + + GRG V Sbjct: 266 PPHNLGELVDALSALIHNPEATLQELLEYMPGPDFPTGGIIMGNIGIL-EAFRTGRGRVV 324 Query: 241 MRAVWKKE-------DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHEN 293 +R E A++I +P+Q + A ++E+IA + NK L V D+RDESD Sbjct: 325 IRGKTDIELLDSKTKRAAIIIQEIPYQTNKASLVEKIADLVENKILEGVSDIRDESDRSG 384 Query: 294 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVF 353 ++ + R D V+N+L+ T L+ S+ N+ I +G+P + L E+L +L F Sbjct: 385 MRIVIELKR--GSDPAIVLNNLYRLTALQSSFSCNMVGIL-NGQPKLMGLKELLQAFLDF 441 Query: 354 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALM---SRFGLT 410 R V RR ++L + +R HI+EG++V N+DEVI IR A F L+ Sbjct: 442 RCSVVERRARFKLSQAQERNHIVEGIIVGLDNLDEVINTIRKASSNALAAASLRKEFELS 501 Query: 411 ETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQ 470 E QAEAIL++ LR L LE K E L + +L+ +L+S++++ L+++E Sbjct: 502 EKQAEAILDISLRRLTALERNKFVEEGKSLRTQISKLEELLSSKKQILQLIEEEAIEIKN 561 Query: 471 AYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGL------- 523 + + RRS L++ ++ + + D++P+E + + +S+ G+V+ K + Sbjct: 562 KFFNPRRSMLED-TDSGDLEDIDVIPNEEMLLAISEKGYVKRMKPDTFNLQNRGTIGKSV 620 Query: 524 -NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS--ARGQGEPLTGKLTLPPGA 580 + D+ + +++ V++ G Y+ +P G PL L+L G Sbjct: 621 GKLRVNDAMSDFLVCRAHDKVLYFSDKGTVYSSPAYKIPECSRTAAGTPLVQILSLSDGE 680 Query: 581 TVDHMLMESD---DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIE 637 + ++ S+ DQ L+M + GY + N + G I L + + V Sbjct: 681 RITSIIPVSEFAADQYLVMLTVNGYIKKVSLNYFASIRCTGIIAIQLVPDDEL-KWVKCC 739 Query: 638 DASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQS 696 +D + +Q G +++ P +++ L + +G+ + + + D + Sbjct: 740 SNNDFVAMASQNGMVILTPCANIRALGRNTRGSVAMRLKEGDKVASMDIIPDALQKELDK 799 Query: 697 T---------------LTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDS 741 T L K P + T R G D + Sbjct: 800 TLEVQQRQYRSMKGPWLLFVSESGYGKRVPVSRFR-TSPLNRVGLFGYKFSSEDCLAAVF 858 Query: 742 PRRASSGDSEE 752 S G+ E Sbjct: 859 VVGFSLGEDGE 869 Score = 85.7 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 36/262 (13%), Positives = 77/262 (29%), Gaps = 38/262 (14%) Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFK 532 L + E ++ ++ ++L+ G+++ + + D K Sbjct: 675 SLSDGERITSIIPVSEFAADQYLVMLTVNGYIKKVSLNYFASIRCTGIIAIQLVPDDELK 734 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESD-- 590 +N V G + A G+ + + L G V M + D Sbjct: 735 WVKCCSNNDFVAMASQNGMVILTPCANI-RALGRNTRGSVAMRLKEGDKVASMDIIPDAL 793 Query: 591 -------------------DQKLLMASDAGYGFVCTFNDL--VARNRAGKALITLPENAH 629 LL S++GYG + NR G Sbjct: 794 QKELDKTLEVQQRQYRSMKGPWLLFVSESGYGKRVPVSRFRTSPLNRVGLFGYKFSSEDC 853 Query: 630 V-----MPPVVIEDA--SDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAAR 681 + + + ED + ++ ++Q+G + V D+ S+ +G ++ + A + Sbjct: 854 LAAVFVVGFSLGEDGESDEQVVLVSQSGTVNRIKVRDISIQSRYARGVILMRLEHAGKIQ 913 Query: 682 GEDGLAQLYVLPPQSTLTIHVG 703 ++ P T Sbjct: 914 SASLISAADADPEDEDATAVAA 935 >UniRef50_D1AVF2 DNA gyrase, A subunit n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AVF2_STRM9 Length = 870 Score = 749 bits (1935), Expect = 0.0, Method: Composition-based stats. Identities = 252/760 (33%), Positives = 407/760 (53%), Gaps = 34/760 (4%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 E + + + + +YL+YSM VI+ RALP + DGLKPV RRI+YAM EL +N ++ +KKS Sbjct: 39 NEELIYIEDEIKASYLDYSMSVIVSRALPDVRDGLKPVHRRILYAMDELKMNHNSPYKKS 98 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VG+VLGKYHPHGDSA Y +MV MAQ F+ RY LVDG GN+G+ D S AAMRYTE+ Sbjct: 99 ARLVGEVLGKYHPHGDSAVYNSMVRMAQDFNTRYMLVDGHGNFGSIDG-DSAAAMRYTEA 157 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 R+SK +E +L ++ + T DW NFD +L EP +LPARLPN+LLNGTTGIAVGMAT+IPPH Sbjct: 158 RMSKIAEEMLIDINKDTIDWRKNFDESLDEPTVLPARLPNLLLNGTTGIAVGMATNIPPH 217 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL E++ IALID ++D+L+ ++GPD+PT II ++ I Y+ GRG VR+ A Sbjct: 218 NLGELSDGIIALIDNRDISIDELITHIKGPDFPTGG-IIYGKSGIYSAYKTGRGKVRVSA 276 Query: 244 VWKK-----EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + ++VI+ LP+QV+ A ++++I +++K + + DL D S+ E ++ Sbjct: 277 KTEIITDKKGRQSIVITELPYQVNKANLIKRIGELVKDKIIVGISDLADLSNLEGIRIVI 336 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + + + + V+N L TDL+ ++ I + + ++ P + NL EIL ++L R D + Sbjct: 337 DIKKGE--EAEIVLNKLLKFTDLQTTFGIIM-LALVNNAPKILNLKEILEKYLEHRYDVI 393 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAE 415 R+ + L K R HILEGL A +IDE+I IIR K +L+++F TE Q + Sbjct: 394 TRKTIFDLNKAKDRAHILEGLRKALDHIDEIISIIRGSKTRALAKESLIAKFEFTEIQTD 453 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 AIL+++L L L +I E +L L+ ILA + + ++K+E+ Q YGD Sbjct: 454 AILDMRLHRLTGLAREEIDTEYDKLMLFITDLEDILAKDERKYAIIKEEVLELKQKYGDA 513 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK--------A 527 RR+ ++ + ++ D++ +E V + +++ G+ + A K Sbjct: 514 RRTSIEN--DRYEINIEDLIKNEDVIVTITKRGYAKRMSLDSYKAQKRGGKGVSNTTTIE 571 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS--ARGQGEPLTGKLTLPPGATVDHM 585 D K K+ ++ G+ Y+I +P + +G+ + + L + + Sbjct: 572 DDVLKDLFTAKTLDTLMVFSDKGKVYSIKVYEIPEVSKQARGKLIGNIIELDENEKISVI 631 Query: 586 LMES----DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDAS- 640 + D++ L+ + G ++ NR GK I+ ++ + V I S Sbjct: 632 IPVDEIENDNRDLIFITRNGIAKKTKISEFKTINRNGKIAISFKDDEDEVKFVGITSGSE 691 Query: 641 -DMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTL 698 D + T+ G + F D+ + + G + I + S + D + + + ++ Sbjct: 692 KDEIFISTKGGMAVRFKEEDIRSMGRTAAGVRAIKLNSNDEVVSADVIYTDNNVD-EMSV 750 Query: 699 TIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVE 738 K + +RG +G L+R + E Sbjct: 751 LSVTSLGIGKKTLLSEYNII-KRGGKGVKNYNLERRSKEE 789 Score = 75.0 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 42/242 (17%), Positives = 79/242 (32%), Gaps = 35/242 (14%) Query: 479 PLQEREEAKAMSEHDMLPSEPV-TIVLSQMGWVRSAKGHDIDAPGLNYK-------AGDS 530 L E E+ + D + ++ I +++ G + K + N K D Sbjct: 621 ELDENEKISVIIPVDEIENDNRDLIFITRNGIAKKTKISEFKTINRNGKIAISFKDDEDE 680 Query: 531 FKA--AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHML 586 K G + G + + R G G + L V Sbjct: 681 VKFVGITSGSEKDEIFISTKGGMAVRFKEEDI---RSMGRTAAGVRAIKLNSNDEVVSAD 737 Query: 587 MES-----DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL------PENAH---VMP 632 + D+ +L + G G ++ R GK + E + V+ Sbjct: 738 VIYTDNNVDEMSVLSVTSLGIGKKTLLSEYNIIKRGGKGVKNYNLERRSKEESEHHYVVY 797 Query: 633 PVVIEDASD-----MLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGL 686 +I+ + + L+AI+ G ++ + DLP + + KG KI ++ E D + Sbjct: 798 STIIDPSDENSENMELVAISTTGTVIRIKIKDLPVVGRNSKGVKIQSLKYKEYLVSADRV 857 Query: 687 AQ 688 A Sbjct: 858 AA 859 >UniRef50_C7M119 DNA gyrase, A subunit n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M119_ACIFD Length = 816 Score = 749 bits (1934), Expect = 0.0, Method: Composition-based stats. Identities = 232/770 (30%), Positives = 378/770 (49%), Gaps = 38/770 (4%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 E + L E E ++L YS+ VI+ RALP DGLKPV RRI+Y+M + G K Sbjct: 11 NVELIELQEEMERSFLEYSLSVIIARALPDARDGLKPVHRRILYSMYDAGYRPDRPHVKC 70 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 A+ VGDV+ ++HPHGD+A Y+A+V MAQ FS +PL+DG GN+G+PD AA RYTE Sbjct: 71 AKVVGDVMSRFHPHGDAAIYDALVRMAQDFSLLHPLIDGHGNFGSPDPSTGPAASRYTEC 130 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 RL+ + LL+ + + T D+VPN+D EP +LPAR PN+L+NG+ GIAVGMAT IP H Sbjct: 131 RLAPIALELLAGIDEDTVDFVPNYDSQTVEPSVLPARFPNLLVNGSQGIAVGMATQIPSH 190 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL EV A LID P+ T+D+L+ V GPD+PT II R IR Y GRGSV++RA Sbjct: 191 NLGEVVDAIAYLIDHPEATVDELMRFVPGPDFPTGG-IILGRDGIRDAYRTGRGSVKLRA 249 Query: 244 VWKKED----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 V E+ +V++ +P Q S + ++I + K L + D+++ S ++ Sbjct: 250 VATIEEARSGYQIVVTEIPFQTSVEVIADKIRHLVEEKLLEGIRDMKNFSAGSETRFVIE 309 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 + R + + V+N+L+ T L+ S+ I + + +DG P NLL + ++ +R+ +R Sbjct: 310 LKR--DANPNVVLNNLYRLTPLQTSFPIQM-LALVDGAPRTLNLLGLCQIYVDHQREVIR 366 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEII----RNEDEPKPALMSRFGLTETQAE 415 RR +RL K +RLHI+EGLL +D VI I + FG +E QA Sbjct: 367 RRSEFRLGKARERLHIVEGLLSCIDQLDAVIATIRASEDRAAARAALMAEPFGFSELQAN 426 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 IL++ L L +L ++ E + L +L+ ILA ++++ ++K E+ A Y Sbjct: 427 HILDMTLGRLTRLGREELEEEAATLRATIAELEAILADAQRLSAVVKDEMLAATAEYRQA 486 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP--------GLNYKA 527 RR+ + + + D++ EP+ +++S+ G++++ A G K Sbjct: 487 RRTRFE--VDPGDFAAEDLIEDEPIVVLISRSGYIKAVPESSFKAQGRGGRGVVGARVKD 544 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHM 585 D + ++ S GR Y + LP +G L + L + + Sbjct: 545 EDEIAHVISSSMLSRLLVFSSRGRVYQLRGYELPKLERSARGTALVNLVPLADDERITSV 604 Query: 586 LMESD---DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM 642 + D D L+ + G + R G I + + ++ VV + D Sbjct: 605 MGTKDFPEDADLVFFTRNGMVKRTAMAEYARSRRDGIIAIDVRGDDELVSVVVATEEHDG 664 Query: 643 LLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 ++ T+ G++L FP++++ + + G + I + + ++ + + Sbjct: 665 VVF-TKRGQVLRFPLAEVRRTGRATAGVRSIRRADGDW------IVAGGLIEDGVEVLLV 717 Query: 702 VGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 + K P + V G +RG+ +R + E Sbjct: 718 TSRGYGKRTPLDSFPVHHR---GGAGIRGIGLTERKGELVAAAFVRPEDE 764 Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 69/218 (31%), Gaps = 14/218 (6%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKA 533 L + E ++ P + + ++ G V+ + ++ + D + Sbjct: 595 LADDERITSVMGTKDFPEDADLVFFTRNGMVKRTAMAEYARSRRDGIIAIDVRGDDELVS 654 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQK 593 V V G+ + G+ + G + + D + Sbjct: 655 VVVATEEHDGVVFTKRGQVLRFPLAEV-RRTGRATAGVRSIRRADGDWIVAGGLIEDGVE 713 Query: 594 LLMASDAGYGFVCTFNDL----VARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQA 649 +L+ + GYG + +T + ++ + D +L ++ Sbjct: 714 VLLVTSRGYGKRTPLDSFPVHHRGGAGIRGIGLTERKG-ELVAAAFVR-PEDEVLIVSSQ 771 Query: 650 GRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGL 686 G+M+ + D+ + G K+I++ + E+ + Sbjct: 772 GQMIRVRIGDISNQGRYATGVKLISLQAEESVASVGVV 809 Score = 46.1 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 52/182 (28%), Gaps = 12/182 (6%) Query: 470 QAYGDDRRSPLQ--EREEAKAMSEHDMLPSEPVTIVLSQMGWV--------RSAKGHDID 519 Y RR + + + + E +V ++ G V R Sbjct: 631 AEYARSRRDGIIAIDVRGDDELVSVVVATEEHDGVVFTKRGQVLRFPLAEVRRTGRATAG 690 Query: 520 APGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPG 579 + GD A + V+ V S G + P G + G Sbjct: 691 VRSIRRADGDWIVAGGLIEDGVEVLLVTSRGYGKRTPLDSFPVHHRGGAGIRGIGLTERK 750 Query: 580 ATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNR--AGKALITLPENAHVMPPVVIE 637 + + ++L+ S G D+ + R G LI+L V V+ Sbjct: 751 GELVAAAFVRPEDEVLIVSSQGQMIRVRIGDISNQGRYATGVKLISLQAEESVASVGVVP 810 Query: 638 DA 639 ++ Sbjct: 811 ES 812 >UniRef50_Q59749 DNA topoisomerase 4 subunit A n=64 Tax=Alphaproteobacteria RepID=PARC_RHIME Length = 758 Score = 748 bits (1932), Expect = 0.0, Method: Composition-based stats. Identities = 291/757 (38%), Positives = 440/757 (58%), Gaps = 33/757 (4%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 D + + L E YL Y++ IM RALP + DGLKPV RRI++AMSE+GL ++ FK Sbjct: 12 DDNIQPVDLKAALEERYLAYALSTIMHRALPDVRDGLKPVHRRIIHAMSEMGLRPNSSFK 71 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K AR VGDV+GK+HPHGD + Y+A+V +AQ FS RYP+VDGQGN+G D + AA RYT Sbjct: 72 KCARIVGDVIGKFHPHGDQSVYDALVRLAQDFSQRYPVVDGQGNFGNIDG-DNAAAYRYT 130 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+++++ + LLL + Q D+ P ++ QEP +LP PN+L NG +GIAVGMAT IP Sbjct: 131 EAKMTEVAALLLEGIDQDAVDFRPTYNEEDQEPTVLPGAFPNLLANGASGIAVGMATSIP 190 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLL--------DIVQGPDYPTEAEIITSRAEIRKIYE 233 PHN E+ AA+ LI P T++ LL ++GPD+PT I+ SRA + + Y Sbjct: 191 PHNAHELCDAALHLIKHPDATVEDLLFDPANPQRGGIEGPDFPTGGVIVESRASMAESYR 250 Query: 234 NGRGSVRMRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDE 288 GRG R+RA W ED +V++ +P+QV +R++E+IA + +KLP+++D+RDE Sbjct: 251 TGRGGFRVRARWAVEDLGRGGFQIVVTEIPYQVQKSRLIEKIAELLIARKLPLLEDIRDE 310 Query: 289 SDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILS 348 S + R+V+VP+S VD + +M LF T+LE +N+N++ + P V L E+LS Sbjct: 311 SAED--VRVVLVPKSRSVDANILMESLFKLTELESRIPLNMNVLSMGRVPRVMALNEVLS 368 Query: 349 EWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFG 408 EWL RR+ ++RR +RL + +RL IL G L+A+LNIDEVI IIR EDEPK ++ RFG Sbjct: 369 EWLAHRREVLQRRSRHRLAAIDRRLEILGGYLIAYLNIDEVIRIIREEDEPKAVMIERFG 428 Query: 409 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 LT+ QAEAIL ++LR L KLEE +IR E L KE+ +++ +LAS K + E+ Sbjct: 429 LTDVQAEAILNMRLRSLRKLEEFEIRTEFDSLSKEKAEIEALLASGDKQWQAVAWEIGEV 488 Query: 469 AQAYGD-----DRRSPLQEREEAK-AMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG 522 + + RRS + +A + M+ EP+T+V+S+ GW+R+ KGH D Sbjct: 489 KKKFAKATELGKRRSTFSDAPDADVEAIQQAMIEKEPITVVISEKGWIRALKGHIADTSS 548 Query: 523 LNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATV 582 L +K GD K + ++ ++ + G++Y + LP RG GEPL + + V Sbjct: 549 LQFKDGDGLKVSFPAQTTDKILIFTTGGKAYTLGGDKLPGGRGHGEPLRIMVDMENDQDV 608 Query: 583 DHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM 642 + +KL+++S AG GFV T +D+VA R GK ++ + V ++ D Sbjct: 609 LTAFVHDPARKLIVSSTAGNGFVVTESDIVANTRKGKQVMNVTMPDEAKLVVPVKG--DH 666 Query: 643 LLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI-H 701 L + + +ML+FP+ +P++++GKG ++ G++ + LT Sbjct: 667 LAVVGENRKMLVFPLVQVPEMARGKGVRLQRYKDG-------GVSDIRSFAIAEGLTWED 719 Query: 702 VGKRKIKLRPEELQKVTGERGRRG-TLMRGLQRIDRV 737 R +EL + G+R G + +G R + Sbjct: 720 SAGRVFTKTRDELIEWMGDRAGAGRVVPKGFPRSGKF 756 >UniRef50_A8LLG0 DNA topoisomerase IV, A subunit n=23 Tax=Alphaproteobacteria RepID=A8LLG0_DINSH Length = 777 Score = 747 bits (1929), Expect = 0.0, Method: Composition-based stats. Identities = 284/763 (37%), Positives = 433/763 (56%), Gaps = 46/763 (6%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 L YL Y++ IM RALP DGLKPV RRI+YAM EL L+A+ F+KSA+ G Sbjct: 26 PLRRAIGARYLQYALSTIMHRALPDARDGLKPVHRRILYAMRELRLSATGGFRKSAKISG 85 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 DV+G YHPHGD+A Y+AM +AQ F+ RYPLVDGQGN+G D A+ RYTE+RL+ Sbjct: 86 DVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAAS-RYTEARLTAA 144 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 +E L+ L + D+ N+DGTL EP++LPA PN+L NG++GIAVGMAT+IPPHNL E+ Sbjct: 145 AEALMEGLAENAVDFRDNYDGTLTEPEVLPAAFPNLLANGSSGIAVGMATNIPPHNLHEL 204 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248 + LI P + LL+++ GPD+PT I+ + I + Y GRG+ R+RA W +E Sbjct: 205 IDGCLHLIRAPNARDETLLEMIPGPDFPTGGVIVEPKESIAQAYATGRGAFRLRARWARE 264 Query: 249 D-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 D +VI+ +P+QV ++++E+IA ++ KK+P++ D+RDES + R+++ PRS Sbjct: 265 DLGRGQWQIVITEIPYQVQKSKLIEKIADLIQTKKVPILADIRDESADD--VRIILEPRS 322 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLN 363 VD + +M LF ++LE + +N+N++ P V +L E+L +L RRD + RR Sbjct: 323 KNVDPEVLMGTLFRLSELETRFSLNMNVLIDGRTPKVCSLREVLRAFLDHRRDVLGRRSR 382 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMS------------------ 405 +RL K+ RL +LEG LVAFLN+D VI+IIR +++PK ALM Sbjct: 383 HRLAKIDHRLEVLEGFLVAFLNLDRVIDIIRYDEDPKAALMREDWSLKHVRATDEADYKT 442 Query: 406 ----RFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLL 461 LTE QAEAIL ++LR L +LEEM++ E+ L ER +L+ +LA E + Sbjct: 443 PAPGEGELTEVQAEAILNMRLRSLRRLEEMELISERDALMAERAELEDLLADEALQWARI 502 Query: 462 KKELQADAQAYGD-----DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGH 516 EL+ + +G RR+ E +S DM+ EP+T+V S+MGW+R+ KGH Sbjct: 503 ADELREVRKQFGKGTALGKRRTDFAVATEMAEVSLEDMIEREPITVVCSKMGWIRAMKGH 562 Query: 517 DIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTL 576 L +K GD + ++ ++ + GR Y + LP RG GEP+ + L Sbjct: 563 VALDQALKFKDGDEGRFIFHAETTDKLLAFGANGRFYTLSCAALPGGRGMGEPIRLMVDL 622 Query: 577 PPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVI 636 P A + + + ++L++ASDAG GF+ +++A+ R GK ++ + + + Sbjct: 623 PNEAELVDLFLHVPGRRLIVASDAGDGFIVPETEVLAQTRTGKQVLNVKSPHRALLARPV 682 Query: 637 EDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQS 696 D + A+ + ++L+F +LP++ +GKG ++ GL+ L Sbjct: 683 AG--DAIAAVGENRKLLVFAADELPEMGRGKGVRLQKYKDG-------GLSDLRSFDRAQ 733 Query: 697 TL-TIHVGKRKIKLRPEELQKVTGERGRRGTL-MRGLQRIDRV 737 L + G R + EL + +G+R G + RG R ++ Sbjct: 734 GLQWLDAGGRTRTVADPELAEWSGKRAGTGRMAPRGFPRDNKF 776 >UniRef50_P48371 DNA gyrase subunit A n=482 Tax=cellular organisms RepID=GYRA_NEIGO Length = 916 Score = 747 bits (1928), Expect = 0.0, Method: Composition-based stats. Identities = 243/844 (28%), Positives = 398/844 (47%), Gaps = 112/844 (13%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 ++L + +YL+Y+M VI+ RALP + DGLKPV RR++YAM EL N +A +KKSAR Sbjct: 18 PVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNAAYKKSARI 77 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VGDV+GKYHPHGDSA Y+ +V MAQ F+ RY L+DGQGN+G+ D + AAMRYTE R++ Sbjct: 78 VGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGL-AAAAMRYTEIRMA 136 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 K S +L+++ + T ++ PN+DG+ EP +LP R P +L+NG++GIAVGMAT+IPPHNL Sbjct: 137 KISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATNIPPHNLT 196 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 + A + L+D+PKT +D+L+DI+Q PD+PT A I +R+ Y+ GRG V MR Sbjct: 197 DTINACLRLLDEPKTEIDELIDIIQAPDFPTGATI-YGLGGVREGYKTGRGRVVMRGKTH 255 Query: 247 K-------EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 E +VI +P+QV+ A+++E+I +R K L + +LRDESD ++ Sbjct: 256 IEPIGKNGERERIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSGMRVVIE 315 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 + R+ + + V+N L+ T L+ S+ IN+ ++ +DG+P + NL +ILSE+L RR+ V Sbjct: 316 LKRNE--NAEVVLNQLYKLTPLQDSFGINM-VVLVDGQPRLLNLKQILSEFLRHRREVVT 372 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSR---------- 406 RR +RL+K HI E VA NIDE+I++I+ E K L++R Sbjct: 373 RRTLFRLKKARHEGHIAERKAVALSNIDEIIKLIKESPNAAEAKEKLLARPWASSLVEEM 432 Query: 407 --------------------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSEL 440 + L+E QA+AIL + LR+L L++ +I L Sbjct: 433 LTRSGLDLEMMRPEGLVANIGLKKQGYYLSEIQADAILRMSLRNLTGLDQKEIIESYKNL 492 Query: 441 EKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPV 500 + IL+ ++ +++ EL+ YGD+RRS + +++ D++P + Sbjct: 493 MGKIIDFVDILSKPERITQIIRDELEEIKTNYGDERRSEI--NPFGGDIADEDLIPQREM 550 Query: 501 TIVLSQMGWVRSAK--------GHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRS 552 + L+ G++++ K D + ++ ++ + G+ Sbjct: 551 VVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMCFTNLGKC 610 Query: 553 YAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLM---ESDDQKLLMASDAGYGFVCT 607 + I LP +G P+ + L G V +L +DQ + A+ G Sbjct: 611 HWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQ 670 Query: 608 FNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFP----------- 656 + G I L E +++ +D ++ + G+ + F Sbjct: 671 LSAFKNVRAQGIKAIALKEGDYLVGAAQ-TGGADDIMLFSNLGKAIRFNEYWEKSGNDEA 729 Query: 657 -----VSDLP--------------QLSKGKGNK----------IINIPSAEAARGEDGLA 687 +++ K G + + +P+ A Sbjct: 730 EDADIETEISDDLEDETADNENTLPSGKN-GVRPSGRGSGGLRGMRLPADGKIVSLITFA 788 Query: 688 QLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASS 747 + K P + + G + +R Sbjct: 789 P-ETEESGLQVLTATANGYGKRTPIADY---SRKNKGGQGSIAINTGERNGDLVAATLVG 844 Query: 748 GDSE 751 + Sbjct: 845 ETDD 848 Score = 95.4 bits (236), Expect = 9e-18, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 88/278 (31%), Gaps = 54/278 (19%) Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFK 532 L+E E+ A+ P + + G V+ + + K GD Sbjct: 635 QLEEGEKVSAILAVREFPEDQYVFFATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLV 694 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPI-------------------------------TLP 561 A + ++ + G++ + TLP Sbjct: 695 GAAQTGGADDIMLFSNLGKAIRFNEYWEKSGNDEAEDADIETEISDDLEDETADNENTLP 754 Query: 562 SARGQGEPLTGK------LTLPPGATVDHMLMESDDQK-----LLMASDAGYGFVCTFND 610 S + P + LP + ++ + + + +L A+ GYG D Sbjct: 755 SGKNGVRPSGRGSGGLRGMRLPADGKIVSLITFAPETEESGLQVLTATANGYGKRTPIAD 814 Query: 611 LVARNRAGKALITLPENAH---VMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-G 666 +N+ G+ I + ++ ++ +D L+ IT G ++ V + + + Sbjct: 815 YSRKNKGGQGSIAINTGERNGDLVAATLV-GETDDLMLITSGGVLIRTKVEQIRETGRAA 873 Query: 667 KGNKIINIPSAEAARGEDGLA-QLYVLPPQSTLTIHVG 703 G K+IN+ E + +A L S ++ Sbjct: 874 AGVKLINLDEGETLVSLERVAEDESELSGASVISNVTE 911 >UniRef50_A5EV71 DNA topoisomerase IV, A subunit n=2 Tax=Gammaproteobacteria RepID=A5EV71_DICNV Length = 739 Score = 747 bits (1928), Expect = 0.0, Method: Composition-based stats. Identities = 382/738 (51%), Positives = 496/738 (67%), Gaps = 2/738 (0%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 E +L FTE AYL+Y+MYVI+DRALP + DGLKPVQRR+VYAMSELGL+A +K+KKSA Sbjct: 4 EEHYSLAAFTEKAYLDYAMYVILDRALPALADGLKPVQRRLVYAMSELGLSAGSKYKKSA 63 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 RTVGDVLGKYHPHGDSACYEAMVLMAQ FSYRYPL+DGQGNWG+ DDPKSFAAMRYTES+ Sbjct: 64 RTVGDVLGKYHPHGDSACYEAMVLMAQNFSYRYPLIDGQGNWGSADDPKSFAAMRYTESK 123 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 L+ Y+ LL+EL T DW NFDGTLQEPK LPARLPNILLNG +GIAVGM+TDIPPHN Sbjct: 124 LTAYAHSLLAELNPETVDWTANFDGTLQEPKTLPARLPNILLNGGSGIAVGMSTDIPPHN 183 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 + E+ A AL+ P+ + + LL IV PD+PT +I +R EI Y G GSVR+RA Sbjct: 184 MGEIVAACQALLKNPQLSEEALLQIVPAPDFPTGGVLINTREEIAHCYRTGSGSVRLRAS 243 Query: 245 WKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 + E +VI LP+QVSG++V EQI Q++ KKL ++ +RDESDH+NPTRLV++PRS+ Sbjct: 244 YHIEKDNIVIDELPYQVSGSKVQEQITQQIQEKKLLWLEAVRDESDHKNPTRLVLLPRSH 303 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 364 R+D ++M HLFATTDLEK+ RI LNMIGLDG+P +K L+ IL EWL +R TV RRL+Y Sbjct: 304 RIDKKRLMQHLFATTDLEKTVRIQLNMIGLDGKPQIKPLIVILREWLTYREQTVMRRLSY 363 Query: 365 RLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRH 424 RL + +RL IL GL +AFL +D VI+IIR D+ + ALM LT Q+EAIL ++LR Sbjct: 364 RLHALNERLEILAGLRIAFLQLDTVIQIIREHDDAQTALMQALPLTAAQSEAILNIRLRQ 423 Query: 425 LAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQERE 484 LAKLEE I E+ L E+ LQ ++ + + EL ADAQ Y D RR+ + + Sbjct: 424 LAKLEENAIVQEEKTLIDEQKSLQNLIDNRDARLQFIADELAADAQNYADPRRTTFIKPD 483 Query: 485 EAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVV 544 A+ PSE VT+VLS+M WVR AK H +D L YK+GD F + KS+Q + Sbjct: 484 AKTALPARAWQPSEAVTLVLSKMAWVRLAKTHQVDGRTLAYKSGDEFLLQIAAKSDQTAI 543 Query: 545 FVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGF 604 + GR YA+ + SARG GEPL+ + T+ +Q ++A++ YGF Sbjct: 544 LCGNDGRYYALSLANIASARGYGEPLSRYFSFAEKTTIVAAAALDPEQYYVLAANNAYGF 603 Query: 605 VCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS 664 V +DLVA+ + GKA++ + + + + + D +L A+ GR L+FP DLPQ S Sbjct: 604 VVKGSDLVAKTKKGKAVLNVGKANAL-ALLPLFDEESLLCALDNTGRTLIFPARDLPQQS 662 Query: 665 KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRR 724 KGKGNKI+ I E +G L QL +LPPQ++ + GKR ++L + G RG++ Sbjct: 663 KGKGNKIMAITQKEWIQGV-RLKQLLILPPQASCLLTSGKRSMQLNAQNWAPYCGARGQK 721 Query: 725 GTLMRGLQRIDRVEIDSP 742 G + R VE+ P Sbjct: 722 GVYLPQPFRNADVEVIMP 739 >UniRef50_Q2NAD1 Type IIA topoisomeraseA subunit n=30 Tax=Alphaproteobacteria RepID=Q2NAD1_ERYLH Length = 931 Score = 744 bits (1922), Expect = 0.0, Method: Composition-based stats. Identities = 239/831 (28%), Positives = 389/831 (46%), Gaps = 97/831 (11%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 ER+ + + + +YL+Y+M VI+ RALP + DGLKPV RRI++A E G A ++KSA+ Sbjct: 5 ERIDIVDEMKTSYLDYAMSVIVSRALPDVRDGLKPVHRRILFASKEGGFVAGRPYRKSAK 64 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 VGDV+G YHPHGDSA Y+A+ M Q +S R PL+DGQGN+G+ D P A+MRYTE+RL Sbjct: 65 IVGDVMGNYHPHGDSAIYDALARMTQDWSLRVPLIDGQGNFGSMD-PDPPASMRYTEARL 123 Query: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 +K + LL +L + T D+ N+DG+L+EP++LPAR PN+L+NG GIAVGMAT++PPHNL Sbjct: 124 AKVANALLDDLDKDTVDFSDNYDGSLKEPQVLPARFPNLLVNGAGGIAVGMATNVPPHNL 183 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245 EV +A I P T ++L+ + GPD+PT I+ +A R Y GRGSV MRA Sbjct: 184 GEVIDGCLAFIANPAITSEELMQYIPGPDFPTAPLIL-GQAGARAAYTTGRGSVLMRARH 242 Query: 246 KKEDGA-----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 + E+ +V +++P+QV + ++E+IA + K++ + D+RDES E +V + Sbjct: 243 EIEEKRGDRKSIVFTSIPYQVGKSGLVEKIADAAKEKRIEGISDIRDESSREGVRVVVDL 302 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360 R + V+N ++ T + S+ N+ I GRP V L +I+ ++ FR + + R Sbjct: 303 KR--DASPEVVLNQIWRYTPAQASFPANMLAI-KGGRPEVLTLRDIVQAFVSFREEVITR 359 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP---KPALMSR----------- 406 R + L K +R H+L GL+VA N+DEV+ +IR P + L ++ Sbjct: 360 RTKFELNKARERAHVLLGLVVAVSNLDEVVAMIRGSSNPQIAREKLRAKLWPIGDIAQYI 419 Query: 407 ----------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450 + L+E Q +AIL+L+L L L +I E EL E ++ I Sbjct: 420 QLIEAIEPTADQEGGTYQLSERQVKAILDLRLHRLTALGRDEIGDELKELASEIEEYLSI 479 Query: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510 LA K+ +L+ EL Y R S + + + D++ E + + ++ G++ Sbjct: 480 LADRGKLFGVLQDELVEIKDEYATPRVSEIAPAWDGLE--DEDLIAREDMVVTVTHGGYI 537 Query: 511 RSAK--------GHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS 562 + G+ K D+ ++ PV+F + GR Y + LP Sbjct: 538 KRTPLATFRAQARGGKGRSGMATKDEDAVVELFVTSTHNPVLFFTNLGRVYRMKVWKLPE 597 Query: 563 A--RGQGEPLTGKLTLPPGATVDHMLMESDDQ------KLLMASDAGYGFVCTFNDLVAR 614 +G P+ L L V ++L +D+ ++ A++ G + + Sbjct: 598 GSPTTKGRPMVNLLPLGDDERVTNVLSLPEDEESWAALNIVFATEQGMVRRNSMDAFTNV 657 Query: 615 NRAGKALITLPE--NAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNK 670 GK + E ++ ++ + + AG+ + F +D + G G + Sbjct: 658 PTGGKYAMGFVEGTGDRLIGVELL-SEDQEIFLASDAGKAIRFAATDARETKSRTGIGVR 716 Query: 671 IINIPSAEAARGEDGLAQLY-------------------------------VLPPQSTLT 699 + + L +L + + + Sbjct: 717 GMTLKDDAKVVSMAVLDRLEQDMETREAYLRAAIWKNNDAEHTLDSDKVAQMEEGEEFIL 776 Query: 700 IHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRI--DRVEIDSPRRASSG 748 K+ + G RG +G G +R Sbjct: 777 TLTANGYGKISSAYEYRTIG-RGGQGLANIGTPDSNPERNGPVVASFPVKH 826 Score = 54.2 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 31/280 (11%), Positives = 73/280 (26%), Gaps = 75/280 (26%) Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK------- 526 D+R + + E + + + ++ G VR K Sbjct: 616 DERVTNVLSLPEDEESWAALNI------VFATEQGMVRRNSMDAFTNVPTGGKYAMGFVE 669 Query: 527 -AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHM 585 GD +Q + G++ + + +TL A V M Sbjct: 670 GTGDRLIGVELLSEDQEIFLASDAGKAIRFAATDARETKSRTGIGVRGMTLKDDAKVVSM 729 Query: 586 LMES-------------------------------------DDQKLLMASDAGYGFVCTF 608 + ++ +L + GYG + + Sbjct: 730 AVLDRLEQDMETREAYLRAAIWKNNDAEHTLDSDKVAQMEEGEEFILTLTANGYGKISSA 789 Query: 609 NDLVARNRAGKALITLPENAH-------VMPPVVIEDASDMLLAITQAGRMLMFPVSDLP 661 + R G+ L + V+ ++ S L+ +T +++ P+ + Sbjct: 790 YEYRTIGRGGQGLANIGTPDSNPERNGPVVASFPVKHGSQ-LMLVTDQAKLIRMPI-EFR 847 Query: 662 QL--------------SKG-KGNKIINIPSAEAARGEDGL 686 + + G ++ ++ E G + Sbjct: 848 HMVEGGFEEHKGWSVYGRTSSGVRVFDVAKGEHIVGAAII 887 >UniRef50_UPI0001B9EC7F DNA topoisomerase IV, A subunit n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9EC7F Length = 819 Score = 744 bits (1921), Expect = 0.0, Method: Composition-based stats. Identities = 232/763 (30%), Positives = 388/763 (50%), Gaps = 32/763 (4%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 +S+ L E + + YS Y+I DRA+P + DGLKPVQRRI+YAM + G + Sbjct: 3 LSEQFLPAFLEEVVGDRFGRYSKYIIQDRAIPDVRDGLKPVQRRILYAMYDSGNTPDKPY 62 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 +KSA+TVGDV+G YHPHGDS+ YE MV MAQP+ + LVDG GNWG+ D AAMRY Sbjct: 63 RKSAKTVGDVMGNYHPHGDSSIYEGMVRMAQPWKMGHVLVDGHGNWGSQD-DDPAAAMRY 121 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RLS + LL ++ + T + NFD T +EP +LP+R PN+L+NG +GI+ G AT+I Sbjct: 122 TEARLSPIAMELLRDIEKRTVLFKDNFDNTAKEPVVLPSRYPNLLVNGASGISAGFATEI 181 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNLREV A IA++ +P+ LD+++ ++GPD+PT I+ + Y G+G V Sbjct: 182 PPHNLREVIDACIAVMQKPEIELDEIMTFIKGPDFPTGGIIMGGEGIL-DAYRTGKGRVY 240 Query: 241 MRAVWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 +R+ E +VI+ +P+QV +R++ + KK+ + ++RDES E Sbjct: 241 LRSKTVIESLRGGKQQIVITEIPYQVVKSRLVTAMENIRLEKKVEGIAEVRDESGREGLR 300 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 +V + + D + ++ +LF TDL+ +Y N+ I ++ P L +LS ++ +R Sbjct: 301 IVVELKK--DADANGILAYLFKKTDLQITYNFNMVAI-VNKTPQQLGLKAMLSAYIDHQR 357 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTET 412 + V R + LEK R H+LEGL+ A +DEVI I+ + + L FG TE Sbjct: 358 EVVTHRTQFELEKAEDRAHVLEGLVKALNILDEVIAAIKASKNRQDAQNNLQWMFGFTER 417 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QA++IL L+L L LE ++ E EL K+ + L+ IL S++K+ +++KEL + Y Sbjct: 418 QADSILTLQLYRLTNLEIHSLQKELDELTKKIEGLRAILDSDKKLIGVIRKELIEIREKY 477 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAK-----GHDIDAPGLNYKA 527 G DRRS +QE E ++ ++ +E V + LS G+++ + K Sbjct: 478 GIDRRSVIQEEVEEIKVNLEVLVNAEDVLVTLSNEGYIKRTSMLSFTRSGGELESSGVKE 537 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHM 585 GD + + + ++ S G+ + + +P + + G + + +P + + Sbjct: 538 GDYITRLFEVNTLENLLIFTSRGQYFLLPVHQVPEYKWKDAGTAIVNVIQVPKEDHIVSV 597 Query: 586 LMESD----DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASD 641 + S+ + L+ S G + V + A + ++ V + D++ Sbjct: 598 IPVSNFDEAGKSLVFVSRKGQVKRTDLKEYVTKRSGAVAAAKVAAEDSIIQVV-MSDSNK 656 Query: 642 MLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI 700 ++ I++ G + F ++ + + G + I + + +A L+V + + Sbjct: 657 DIVLISKEGMSIRFNEQEVNAMGRVSGGVRGIQLRDGDEV-----VAALWVENDEGEILT 711 Query: 701 HVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPR 743 K RG +G + RV+ + Sbjct: 712 ITDLGYGKRSLLLDYPAQ-SRGGKGMATFEFKEGKRVKPNGSA 753 Score = 58.8 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 63/183 (34%), Gaps = 22/183 (12%) Query: 501 TIVLSQMGWVRSAKGHDIDAPGLNYKA------GDSFKAAVKGKSNQPVVFVDSTGRSYA 554 + +S+ G V+ + A DS V SN+ +V + G S Sbjct: 610 LVFVSRKGQVKRTDLKEYVTKRSGAVAAAKVAAEDSIIQVVMSDSNKDIVLISKEGMSIR 669 Query: 555 IDPITLPSARGQGEP---LTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL 611 + + G + G V + +E+D+ ++L +D GYG D Sbjct: 670 FNEQEV---NAMGRVSGGVRGIQLRDGDEVVAALWVENDEGEILTITDLGYGKRSLLLDY 726 Query: 612 VARNRAGKALITLP---------ENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQ 662 A++R GK + T + ++ + + A ++ G+ +P Sbjct: 727 PAQSRGGKGMATFEFKEGKRVKPNGSAIVGAFYCREPLQ-INAYSEDGQAFPIHTEKVPI 785 Query: 663 LSK 665 + + Sbjct: 786 MER 788 >UniRef50_D1JED8 DNA gyrase subunit A n=1 Tax=uncultured archaeon RepID=D1JED8_9ARCH Length = 843 Score = 744 bits (1920), Expect = 0.0, Method: Composition-based stats. Identities = 259/791 (32%), Positives = 427/791 (53%), Gaps = 54/791 (6%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + +++ + ++Y++Y+M VI+ RALP DGLKPV RRI+Y M ELG+ + KK Sbjct: 12 ERVIEVSVEDEMTHSYMDYAMSVIVGRALPDARDGLKPVHRRILYGMHELGVTHNRPHKK 71 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SAR VGDVLGKYHPHGD A Y+ MV MAQ FSYRYPLVDGQGN+G+ D + AAMRYTE Sbjct: 72 SARIVGDVLGKYHPHGDVAVYDTMVRMAQDFSYRYPLVDGQGNFGSVDG-DAAAAMRYTE 130 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +RLSK + LL +L + T +W PNFD +L+EP++LPA+LPN+L+NG++GIAVGMAT++PP Sbjct: 131 ARLSKIAGELLVDLEKDTVEWSPNFDNSLKEPQILPAKLPNLLINGSSGIAVGMATNMPP 190 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HNL EV I +I++P+ ++++L+ I++ PD+PT II I++ YE GRGS+R+R Sbjct: 191 HNLTEVVDGVIRVIEEPEVSIEELMQIIKAPDFPTG-GIIIGYEGIKRAYETGRGSIRIR 249 Query: 243 AVWKKE----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 A + E +VI+ +P+QV+ +R++E+IA + K+ + LRDESD + ++ Sbjct: 250 AKAEIEVKGKKERIVINEIPYQVNKSRLVEEIAEFAKKYKVESISGLRDESDRKGMRIVI 309 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + + ++N L+ T LE ++ + +N+ +DG P V L E++ ++ R++ Sbjct: 310 EL--KAGANSAIILNRLYKHTQLENTFGV-INLALIDGEPRVLTLKELIECYIKHRKEVT 366 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAE 415 RRL Y LE+ KRLHIL+GL++A NIDEVI +I+ + K AL++RF L+E QA+ Sbjct: 367 IRRLQYELERAEKRLHILKGLIIAISNIDEVIRLIKAASDTKTAKSALIARFELSEEQAK 426 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 IL+++L L+ LE KI E++ELE + + L+ +L SE ++ LLK++L YGD Sbjct: 427 EILDMRLSRLSALERDKIETERAELETKINWLKEVLGSEARIYELLKEDLIEQKDKYGDA 486 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNY--------KA 527 RR+ + EE +SE D + + V + L+Q +V+ K Sbjct: 487 RRTNI---EEMVTLSERDFVEEKEVILYLTQRDYVKRLPADIFKQQMRGGKGIAVIEKKE 543 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGK----LTLPPGAT 581 D ++ + + ++F G++Y + +P S +G+PL ++ Sbjct: 544 DDKIVNFIRASTRERLIFFTEFGKAYQVKTYEIPPSSRHSKGKPLVNIPGLSISTEEREK 603 Query: 582 VDHMLMESDD-----------QKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHV 630 + ++ L+ A+ G + L A G + + + Sbjct: 604 FVTAVAIPEEVDKGIETNTEGAYLVFATKRGVVKRSSLAKLKAIRSTGVVAVRTTKGDSL 663 Query: 631 MPPVVIEDASDM---------LLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAA 680 V+I+ + D ++ ++ G+ + F +L ++ + G + + + + Sbjct: 664 ADVVLIKPSLDSQDRGAGQNGIILSSKNGKAIFFHEEELREMGRYAAGVRGMRLEKDDEI 723 Query: 681 RGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEID 740 + L + V +S K K + + RG +G + ++ +R Sbjct: 724 ASVEAL-DVGVSKEKSRAVTITEKGYGKRTKLDAYR-ETHRGGKGVI--SIKTGERNGKV 779 Query: 741 SPRRASSGDSE 751 + E Sbjct: 780 VCIKQVKNTDE 790 Score = 75.0 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 67/212 (31%), Gaps = 25/212 (11%) Query: 501 TIVLSQMGWVRSAKG------HDIDAPGLNYKAGDSFKAAVKGKSN----------QPVV 544 + ++ G V+ + + GDS V K + ++ Sbjct: 627 LVFATKRGVVKRSSLAKLKAIRSTGVVAVRTTKGDSLADVVLIKPSLDSQDRGAGQNGII 686 Query: 545 FVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES-----DDQKLLMASD 599 G++ L G+ + L + + + + + ++ Sbjct: 687 LSSKNGKAIFFHEEELREM-GRYAAGVRGMRLEKDDEIASVEALDVGVSKEKSRAVTITE 745 Query: 600 AGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIE--DASDMLLAITQAGRMLMFPV 657 GYG + +R GK +I++ V I+ +D L+ T G + V Sbjct: 746 KGYGKRTKLDAYRETHRGGKGVISIKTGERNGKVVCIKQVKNTDELMVATSDGMVTKISV 805 Query: 658 SDLPQLSK-GKGNKIINIPSAEAARGEDGLAQ 688 + + +G +I+N+ E D L+ Sbjct: 806 RSISVQGRNTQGVRIMNVKKGERVVAVDILSA 837 >UniRef50_O54478 DNA topoisomerase 4 subunit A n=18 Tax=Alphaproteobacteria RepID=PARC_CAUCR Length = 759 Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats. Identities = 285/752 (37%), Positives = 421/752 (55%), Gaps = 33/752 (4%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 L E YL Y++ I RALP + DGLKPV RR++YAMS + LN A +K Sbjct: 17 RILDEPLTEALSRRYLAYALSTIGSRALPDVRDGLKPVHRRVLYAMSNMRLNPDAAARKC 76 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 A+ VG+V+G +HPHGD++ Y+A+V +AQ FS R PLV+GQGN+G D S AAMRYTE Sbjct: 77 AKVVGEVMGNFHPHGDASIYDALVRLAQEFSQRIPLVEGQGNFGNIDG-DSAAAMRYTEC 135 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 ++++ + LLL + + D+ P +DG +EP +LP+ PN+L NG++GIAVGMAT IPPH Sbjct: 136 KMTEAAMLLLDGIDEDAVDFRPTYDGQDEEPVVLPSGFPNLLANGSSGIAVGMATSIPPH 195 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 N E+ A L+ P T LL+ V GPD+PT I+ SRA + + YE GRG VRMRA Sbjct: 196 NAAELIDACQLLLANPDATTADLLEKVPGPDFPTGGVIVESRASLLETYETGRGGVRMRA 255 Query: 244 VWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 W+KED +V++ +P+QV + ++EQ+A + +KK ++ D+RDES + RLV Sbjct: 256 KWEKEDTGRGTYQIVVTEIPYQVKKSDLVEQLADLIDSKKAALLGDVRDESAED--IRLV 313 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + P+S V+ + +M LF + LE + +N+N++ G P V + + L +L RR+ + Sbjct: 314 LEPKSKNVEPEVLMESLFKLSALESRFPVNINVLDARGTPGVMGIKQALMAFLAHRREVL 373 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAIL 418 RR +RL K+ RLHIL+GLL+A+LN+DEVI I+R ED+PK L+ FGLT+ QA+AIL Sbjct: 374 TRRARHRLAKIEARLHILDGLLIAYLNLDEVIRIVRYEDKPKEKLIETFGLTDIQADAIL 433 Query: 419 ELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNL-------LKKELQADAQA 471 +LR LAKLEEM+IR E +EL +ERD + +LASE K L ++ L Sbjct: 434 NTRLRQLAKLEEMEIRREHAELVEERDGILAMLASEAKQWKLVGVGLSEVRAALLKIKHP 493 Query: 472 YGDDR------RSPLQEREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN 524 R RS E + + M+ EP+TI+LS+ GW+R+AKG D L Sbjct: 494 LDKPRPTGVTGRSVFGEAPQVDADAAIEAMIVREPITIILSERGWIRAAKGKIDDPSELK 553 Query: 525 YKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDH 584 +K GD V ++ ++ S GR + + LPSARG GEP+ + L + Sbjct: 554 FKEGDKLGFLVPAETTDKLLIFSSDGRFFTLGCDKLPSARGHGEPVRMMIELDDKVKIID 613 Query: 585 MLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLL 644 + +K ++AS GYGF+ + +A +AGK ++ + +E D L Sbjct: 614 VFPFKAGRKRILASKGGYGFLMPEEEALANRKAGKQVLNVGNEG---AAFCLEAVGDQLA 670 Query: 645 AITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGK 704 I G++L+FP+ +LP++ +GKG K+ G L I Sbjct: 671 VIGDNGKILIFPLEELPEMPRGKGVKLQAYREGGLRDG------LSFNAETGAYWIDTAG 724 Query: 705 RKIKLRPEELQKVTGERGRRGTLMRGLQRIDR 736 R + E ++ G R G L+ ++ Sbjct: 725 R--RRDWAEWKEWVGRRAGAGKLVPKGFATNK 754 >UniRef50_Q1RGX8 DNA topoisomerase 4 subunit A n=15 Tax=Rickettsia RepID=PARC_RICBR Length = 736 Score = 739 bits (1907), Expect = 0.0, Method: Composition-based stats. Identities = 281/746 (37%), Positives = 446/746 (59%), Gaps = 27/746 (3%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 E + YL Y++ IM R+LP + DGLKPV RR++YAM +L L ++ +KK Sbjct: 5 KIENIDFGSALSERYLAYALSTIMSRSLPDVRDGLKPVHRRLLYAMLQLRLEPNSGYKKC 64 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VGDV+GKYHPHGD A Y+ +V +AQ FS RYPL+DGQGN+G+ D + AAMRYTES Sbjct: 65 ARVVGDVIGKYHPHGDVAVYDTLVRLAQHFSLRYPLIDGQGNFGSIDG-DNAAAMRYTES 123 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 R+++ LL+ ++ + T D+ +D + EP ++PA PN+L NG+ GIAVGMAT+IPPH Sbjct: 124 RMTEICTLLMEDIDKDTVDFRSTYDDSDLEPVIMPASFPNLLANGSEGIAVGMATNIPPH 183 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL E+ A + LID PK + +++ ++GPD+PT II I Y GRGS R+RA Sbjct: 184 NLHELCDALMHLIDHPKAEISDIMNFIKGPDFPTGGIIIDKSDVITSAYMTGRGSFRVRA 243 Query: 244 VWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 W+KE+ +V++ +P+QV ++++EQIA +++KK+P+V ++RDES + RLV Sbjct: 244 RWEKEELNYGVYQIVVTEIPYQVQKSKLIEQIAILLKDKKIPLVSNIRDES--TDIIRLV 301 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 I PR D VM LF T+LE ++N+N+IG + P V N+LE+L E+L R++ + Sbjct: 302 IEPRDRSCDPQIVMESLFKLTNLESRIQLNMNVIGSNNVPKVMNILEVLQEFLSHRQNII 361 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAIL 418 RR Y L K+ RL ILEGL +A+LN+DE+I+IIR EDEPK +M RF LTE Q EAIL Sbjct: 362 TRRSTYLLNKIKHRLEILEGLRIAYLNLDEIIKIIREEDEPKAIMMQRFQLTEIQVEAIL 421 Query: 419 ELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG----- 473 +LR L KLEE +I E S L+K++ L+ IL + +++ ++KKE++A +G Sbjct: 422 NTRLRSLRKLEEQEIITEHSNLQKQQAILEEILNNPKELWKVVKKEIKAVQAKFGLNTTI 481 Query: 474 DDRRSPLQERE-EAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFK 532 RR+ ++ + + + EP+TI+ S+MGWVRS KGH+ D + YK GD+ K Sbjct: 482 GARRTSFEQVTLTNQVVDITAFITKEPITIICSKMGWVRSLKGHNNDLSSIKYKEGDAEK 541 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQ 592 ++ + ++ + S GR + + + +G GE + + + + +L+ D Sbjct: 542 FILEAYTTDKILIISSEGRFFTLLADNISKGKGTGESIKLLVDIGNND-ITEILVYKPDH 600 Query: 593 KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRM 652 LL+AS G GFV N+++A+ ++GK ++ +P+ + + + D + I ++ ++ Sbjct: 601 LLLLASSIGKGFVVNSNEVMAQTKSGKQIMNVPDGHTCIACLPVNG--DSVACIGESRKL 658 Query: 653 LMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPE 712 L+F + ++P++ KG+G + +A+ L + + + L+ + G + + Sbjct: 659 LVFNIDEIPEMKKGQGVTLQKFKNAK-------LLDIKIFNREDGLSWNSGGKV--KLEK 709 Query: 713 ELQKVTGERGRRGTLMR-GLQRIDRV 737 + G+RG G L G + +R Sbjct: 710 NIIAFLGKRGSTGKLPPMGFPKNNRF 735 >UniRef50_C5JAG1 DNA topoisomerase IV subunit A n=1 Tax=uncultured bacterium RepID=C5JAG1_9BACT Length = 765 Score = 737 bits (1902), Expect = 0.0, Method: Composition-based stats. Identities = 296/733 (40%), Positives = 437/733 (59%), Gaps = 18/733 (2%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 ++ E A+ E+ YL Y++ I+ R+LP + DGLKPV RRI++AM L L+ + FK Sbjct: 6 AEKIEPAAIRGELESRYLAYALSTIISRSLPDVRDGLKPVHRRILFAMRALRLDPGSGFK 65 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VGDV+GK+HPHGD A Y+AMV +AQ F+ RYPLVDGQGN+G D AAMRYT Sbjct: 66 KSARVVGDVIGKFHPHGDQAAYDAMVRLAQDFAQRYPLVDGQGNFGNVDG-DGAAAMRYT 124 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+RL+ ++ LL +L + T D +P +DG+ +EP +LPAR PN+L NG TGIAVGM+T IP Sbjct: 125 EARLTPVAQALLEDLDRQTVDLIPTYDGSQEEPVVLPARFPNLLANGATGIAVGMSTAIP 184 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHN EV AA+ LI P + +L+ + GPD+PT ++ E+R++Y GRG +R+ Sbjct: 185 PHNAGEVLAAALHLIRHPDCGVAELMKHLPGPDFPTGGVLVAEPEELREVYATGRGGLRL 244 Query: 242 RAVWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 RA W++E +V++ +P+ V R++E+IA + ++K P + D+RDESD + R Sbjct: 245 RARWEQEMVGHGTWRLVVTEIPYHVQKGRLIERIAQLILDRKCPFLSDVRDESDAK--VR 302 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 +V+ PRS +D +++M LF +DLE +NLN++ + RP V +L +L WL R Sbjct: 303 IVLEPRSRGLDPEKIMAFLFKNSDLEVRINVNLNVVTAEARPEVMDLKGLLRAWLDHRFQ 362 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEA 416 RR + LE++ +RLH+L+ L LNID VI II+ D+P PALM RFG+ QAEA Sbjct: 363 VHTRRATHDLERIRERLHLLQAYLTVHLNIDAVIAIIKAHDDPAPALMQRFGMDSEQAEA 422 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDR 476 +L L+LR L +LEEM IR E E E +L +LA M ++ E++ + + D R Sbjct: 423 VLNLRLRALRRLEEMSIRKEMGEKEARAAELSAMLADPTLMWAAVQDEVKRTRKEFSDGR 482 Query: 477 RSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVK 536 R+ + + D++ EP+T VLS+ GW+++ KGHDID + +K D + AVK Sbjct: 483 RTRMAGPAPEIDLRPEDLIQKEPLTAVLSRKGWIKALKGHDIDLEKIRFKEEDGLERAVK 542 Query: 537 GKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLM 596 G S+Q V F+ ++G+ Y++ LPS + GEPLT L PG + ML + + + Sbjct: 543 GYSHQTVTFLAASGKVYSLLGDRLPSGKRFGEPLTVLFELDPGDRILWMLAVDPEGEYFV 602 Query: 597 ASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFP 656 + G GF DLVA R GK +++L E + + A+ + AI+ R+L+ Sbjct: 603 TTRLGQGFRIRGRDLVANQRTGKQVVSLREGDQPLHVHPVRGAA--VAAISHGRRLLICR 660 Query: 657 VSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQK 716 + + P L +GKG +I N+ +GL PQ+ L + GKR +L EL K Sbjct: 661 LEEFPLLGRGKGVRIQNLGRG------EGLVDAMTFDPQAGLVLDSGKRTRQLT--ELDK 712 Query: 717 VTGERGRRGTLMR 729 G RG RG ++ Sbjct: 713 WQGTRGSRGAMLP 725 >UniRef50_C5JAM2 DNA gyrase subunit A n=1 Tax=uncultured bacterium RepID=C5JAM2_9BACT Length = 890 Score = 736 bits (1901), Expect = 0.0, Method: Composition-based stats. Identities = 236/840 (28%), Positives = 387/840 (46%), Gaps = 100/840 (11%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + D +R+ L E + +YL+Y+M VI+ RALP + DG K V RRI+Y + LG + + Sbjct: 6 LFDDIKRIPLEEEMKQSYLDYAMSVIVARALPDVRDGFKTVHRRILYVLKRLGFDHTKPH 65 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 +KSA VG+V+GKYHPHGDSA YE MV MAQ FS PL+DGQGN+G+ D S AAMRY Sbjct: 66 RKSALIVGEVMGKYHPHGDSAIYETMVRMAQDFSMSIPLIDGQGNFGSIDG-DSAAAMRY 124 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TESR++K S+ +L++L T + PN+DG+LQEP +LP R+P++LLNGT+GIAVGMAT+I Sbjct: 125 TESRMAKISKEILADLDCNTVAFRPNYDGSLQEPTVLPTRVPSMLLNGTSGIAVGMATNI 184 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL E+ A AL++ P L ++++ V+GPD+PT +I+ + I + GRGS+ Sbjct: 185 PPHNLGELLDACCALVENPLMELPEIMEFVKGPDFPTGGQIL-GTSGILNAFRTGRGSIV 243 Query: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 MR E+ A+V++ +P+QV+ A+++E+I R+K + + ++RDES+ Sbjct: 244 MRGKASVEELKGDKEAIVVTEIPYQVNKAKLVEKIGELSRDKVVDGIGEIRDESNRHGIR 303 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 ++ + R + ++N L+ T L+ ++ N + + G P L L+ +L FR Sbjct: 304 IVIEIKRDG--NSQVILNQLYKHTQLQMNFSAN-VLALVKGVPQTLGLKASLTCFLEFRY 360 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMS---------- 405 D + RR Y LEK + HIL G +A +ID+VI +I+ + K AL + Sbjct: 361 DVIVRRTRYFLEKARDKAHILLGFALALSHIDQVITLIKAATDRKSALATLMHENWDAAS 420 Query: 406 -----------------RFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQ 448 + L+E QA AIL+L+L L +E+ +I+ + + Sbjct: 421 IKSYLALLQGPQAESGPYYRLSEIQANAILDLRLHKLTGMEQEEIKSDLQSTMDAIQEYI 480 Query: 449 GILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMG 508 IL ++ ++ E + Y RRS + E+ + + D++PSE + + +S G Sbjct: 481 DILGKPERVRKIMTDEFKTIKADYPTPRRSEILPAED--DIEDEDLIPSEEMVVTISFGG 538 Query: 509 WVRSAKGHDIDAP--------GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITL 560 +++ A G+ K D + + ++ ++F + G+ Y I L Sbjct: 539 YIKRVPLSTYRAQLRGGKGRSGMTMKEEDYVQDIIVANTHDRLLFFTNIGQVYRIPVHQL 598 Query: 561 PSAR--GQGEPLTGKLTLPPGATVDHMLME----SDDQKLLMASDAGYGFVCTFNDLVAR 614 P +G + L + + +L D LL + G +D Sbjct: 599 PIGTPQAKGRAIINVLPIEKDEKITSILDVSKEMDDASTLLFITSKGQVRRNAVSDFERI 658 Query: 615 NRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQ-LSKGK-GNKII 672 GK + L + ++ V + +L T+ G + F +D+ + G + I Sbjct: 659 QSNGKRAMVLEDGETLI-AVKTCRNDNTVLLNTRKGLFIRFDATDVRVFSGRTSTGVRGI 717 Query: 673 NIPSAEAARGEDGLAQLYVLPP-------------------------------------- 694 + + L V P Sbjct: 718 KLAHDDTIISASVLEGFNVDPAERALYLRARAAERGIQGETEDQDTTVEGALSDERLLEL 777 Query: 695 ---QSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 + + K + T GR G G+ + + Sbjct: 778 QEHEQYILTITDLGFGKRTSGYEYRTT---GRGGLGANGILLSAKNGHVVNAFPVIPQDQ 834 Score = 75.7 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 34/262 (12%), Positives = 74/262 (28%), Gaps = 58/262 (22%) Query: 482 EREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK------AGDSFKAAV 535 + + + + + ++ G VR D + N K G++ A Sbjct: 619 DEKITSILDVSKEMDDASTLLFITSKGQVRRNAVSDFERIQSNGKRAMVLEDGETLIAVK 678 Query: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESD----- 590 +++ V+ G D + G+ + L T+ + Sbjct: 679 TCRNDNTVLLNTRKGLFIRFDATDVRVFSGRTSTGVRGIKLAHDDTIISASVLEGFNVDP 738 Query: 591 ------------------------------------------DQKLLMASDAGYGFVCTF 608 +Q +L +D G+G + Sbjct: 739 AERALYLRARAAERGIQGETEDQDTTVEGALSDERLLELQEHEQYILTITDLGFGKRTSG 798 Query: 609 NDLVARNRAGKAL---ITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS- 664 + R G + +N HV+ + D ++ IT GR+L V+D+ Sbjct: 799 YEYRTTGRGGLGANGILLSAKNGHVVNAFPVI-PQDQIMLITNKGRLLRCGVNDIRIAGR 857 Query: 665 KGKGNKIINIPSAEAARGEDGL 686 + +G ++ + E + Sbjct: 858 RTQGVILMRLEKDERVVNVTRI 879 >UniRef50_UPI00016C558B DNA gyrase subunit A n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C558B Length = 883 Score = 736 bits (1900), Expect = 0.0, Method: Composition-based stats. Identities = 232/759 (30%), Positives = 385/759 (50%), Gaps = 65/759 (8%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 L + + ++YL Y+ VI+ RALP + DGLKP QRRI+ AM++LGL ++ K A Sbjct: 23 INPLDIVDELRDSYLTYAQSVIISRALPDVRDGLKPSQRRILVAMNDLGLGPASSTSKCA 82 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 +G+ + +YHPHGD++ Y+++V MAQ ++ RY LV GQGN+G+ AA RYTE+R Sbjct: 83 GIIGETMKRYHPHGDASIYDSLVRMAQDWNLRYRLVHGQGNFGSIAGLPP-AAHRYTEAR 141 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 L+ + LL +L + T D++ N+DG +EP +LP + PN+L+NG+ GIAVGMAT IPPHN Sbjct: 142 LTPAAGELLEDLERDTVDFIDNYDGKYREPLVLPGKFPNLLVNGSDGIAVGMATHIPPHN 201 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 LREV +A + L+D P TL L+ I+ GPD+PT II R + + Y G G + +RA Sbjct: 202 LREVCKALVLLLDNPGATLADLIQIIPGPDFPTGG-IIMGRQGLLEAYARGAGKITLRAR 260 Query: 245 WKKEDG------AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENP--TR 296 + + +++IS +P QV+ ++E+IA ++ +++P V +RDES N R Sbjct: 261 AQVMEEVKGRSPSILISEVPFQVTRNAIVEEIAHLVKEERIPDVSGVRDESSARNGEPVR 320 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 L++ + D V+N L+ T L+K+ I + + +DGRP L E+L ++L R Sbjct: 321 LIVEIKR-GKDPHLVLNQLYQYTKLQKTVSIIM-LALVDGRPRELTLKEMLQKFLDHRVH 378 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALM--------- 404 +RRR + L + KR H+LEG L+A +I++VI+I R N E K L Sbjct: 379 VIRRRTEFLLREAKKRGHVLEGQLIAIADIEQVIQICRTSPNRAEAKARLQGLAVPAALM 438 Query: 405 -------------------SRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERD 445 + + +TE QAEA++ L+L LA LE +I E +L + Sbjct: 439 QRAIGEGAFAALQRELGAVAEYRMTEQQAEAVVNLRLGQLAALESEEILKEYLQLRELIR 498 Query: 446 QLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLS 505 + +L+ + ++ +++++L+ A YGDDR++ + ++ + D++ EP + +S Sbjct: 499 GYETLLSDDANIHAVIREDLERMAAKYGDDRKTEV--SDDGGDVDMEDLIVDEPNVVTIS 556 Query: 506 QMGWVRSAKGHDIDAPGLN-------YKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPI 558 G+V+ + G + D + + ++ +TGR Y + Sbjct: 557 HEGFVKRMALTEYRVQGRGGKGVQGGLRDNDFVEHFFVASTKAYLLCFANTGRMYWLKVY 616 Query: 559 TLPSA--RGQGEPLTGKLTLPPGATVDHMLMESD---DQKLLMASDAGYGFVCTFNDLVA 613 +P+A G + L+L G + ++ + LLMA+ G Sbjct: 617 RIPTAGRTSPGRAIANVLSLAEGEKISSIVPVREFVEGAHLLMATRQGTVKKTDLMAYSN 676 Query: 614 RNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKII 672 + G ITL E ++ + A+D ++ TQ G + F S + + + +G + I Sbjct: 677 VRQGGIIGITLDEGDELINVAL-TRANDEVVLSTQKGMAIRFRESAIRPMGRTARGVRGI 735 Query: 673 NIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRP 711 + +D L + V P L K P Sbjct: 736 KLGK------DDALVGMVVADPDGLLLTVCENGYGKRTP 768 >UniRef50_D2LZG6 DNA topoisomerase IV, A subunit n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZG6_BACS4 Length = 834 Score = 735 bits (1899), Expect = 0.0, Method: Composition-based stats. Identities = 226/751 (30%), Positives = 392/751 (52%), Gaps = 30/751 (3%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 + L L + + + YS Y+I DRALP DGLKPVQRRI+YAM + F+ Sbjct: 4 KERYLDLPLEDVIGDRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMYTDRNTSDKPFR 63 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K+A+TVG+V+G YHPHGDS+ Y+AM+ +Q + R+ LV GN G+ D AAMRYT Sbjct: 64 KAAKTVGNVIGNYHPHGDSSVYDAMIRQSQDWKMRHLLVQMHGNNGSIDG-DPPAAMRYT 122 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+RLS S LL ++ + T D++ NFD +L+EP +LP+R PN+L+NG+TGI+ G ATDIP Sbjct: 123 EARLSAISAELLKDIEKDTVDFMLNFDDSLEEPVVLPSRFPNLLVNGSTGISSGYATDIP 182 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PH+L EV AAI ++ P +T+D L+ ++GPD+PT I ++K YE G+G + + Sbjct: 183 PHHLGEVIDAAIHHMEHPDSTVDDLMKHIKGPDFPTGGTI-QGVDGLKKAYETGKGKIVL 241 Query: 242 RAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 R + ED +VI+ +P++V+ A +++++ +KK+ + ++RD++D Sbjct: 242 RGKAEIEDVRGGKQQIVITEIPYEVNKANLVKRMDELRIDKKVDGIAEVRDDTDRTGLRI 301 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 +V + + D ++++L+ TDL+ SY N+ I + P + L +L ++ +++ Sbjct: 302 VVELKK--EADSKGILHYLYKNTDLQVSYNFNMVAI-FNKTPKLLGLKHMLEAYINHQKE 358 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQ 413 V RR + L K +R HI+EGL+ A +DEVI+ IR ++ + K L + TE Q Sbjct: 359 VVTRRTKFDLNKAKERAHIVEGLIKAISILDEVIQTIRASKDKKDAKDRLQDMYQFTEPQ 418 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 AEAI+ L+L L + + E SEL+K ++L+ IL+SE+ + N +K+EL+ + Y Sbjct: 419 AEAIVTLQLYRLTNTDVTTLEEEASELKKLIEKLEAILSSEKNLINEIKRELKEIKKKYA 478 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGL---NYKAGDS 530 + RR+ +++ E ++ ++PSE V + +++ G+V+ + A K D Sbjct: 479 EARRTVIEQEIEDLKINLEVVIPSEDVRVTVTKEGYVKRSSLRSYAASNGEPPGMKETDR 538 Query: 531 FKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLME 588 +++ + ++ G + LP R + G+ + + + + + Sbjct: 539 LLYSLEINTTDTLLLFTRKGSFLFLPVHQLPEIRWKDSGQHVANLVAMDNDDDILTAIPV 598 Query: 589 S---DDQKLLMASDAGYGFVCTFNDLVA-RNRAGKALITLPENAHVMPPVVIEDASDMLL 644 D + +L A+ G ++ A RN + L ++ V+ + D + + Sbjct: 599 KEFNDSEYVLFATKLGMVKKTVLSEYKAQRNSKALMAVKLKKDDEVISVTL-SDGTHDIF 657 Query: 645 AITQAGRMLMFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVG 703 T G L F ++ + G K IN+ + + PP L + Sbjct: 658 FATHTGYGLWFTEEEVSATGQRTAGVKAINLKKDDFVVSCM--SFKEESPPD--LFLVTQ 713 Query: 704 KRKIKLRPEELQKVTGERGRRG-TLMRGLQR 733 + K + + R +RG +++ L+R Sbjct: 714 RAAYKKMKLNVFE-KTSRAKRGLVMLKELKR 743 >UniRef50_B5Y5U7 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B5Y5U7_PHATR Length = 818 Score = 735 bits (1899), Expect = 0.0, Method: Composition-based stats. Identities = 237/776 (30%), Positives = 392/776 (50%), Gaps = 54/776 (6%) Query: 19 LNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHG 78 + Y++ +IM RA+P DGLKPV RRI+YAM +L L + +K AR VG+VLGK+HPHG Sbjct: 1 MQYALSIIMGRAIPDARDGLKPVHRRILYAMDQLSLYPNTGHRKCARVVGEVLGKFHPHG 60 Query: 79 DSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSE-LLLSELG 137 D A Y+A+V +AQ FS YPL+DG GN+G+ D AAMRYTE RL+K S+ LL +L Sbjct: 61 DMAVYDALVRLAQHFSTAYPLIDGHGNFGSIDA-DPAAAMRYTECRLTKLSQAALLEDLQ 119 Query: 138 QGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALID 197 T D++PNFDG EP +LPA+LP +LLNG++GIAVGMAT+IPPHNL E+ A AL+ Sbjct: 120 DDTVDFLPNFDGNEIEPAVLPAKLPILLLNGSSGIAVGMATNIPPHNLNEIMTACTALVK 179 Query: 198 ----QPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED---- 249 T +LL +V GPD+PT A I+ S K+Y G G + MRAV K E Sbjct: 180 ARQGGAAVTDKKLLQMVPGPDFPTGASIL-STGGTEKLYTTGNGGIVMRAVTKIEKITTG 238 Query: 250 -------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 A++++ LP+QV+ A +LE+IA + KKL + DLRDESD + R+VI + Sbjct: 239 RKSSITRTAIIVTELPYQVNKAALLEKIAGLVNEKKLDGIADLRDESDRDG-IRVVIELK 297 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR-------PAVKNLLEILSEWLVFRR 355 + V V+N+L+ T L+ ++ N + R P L + + +L FR Sbjct: 298 RDAV-AAVVLNNLYKKTPLQTTFSGNFLALMTANRDSSSSLVPQRFTLRQAMDCFLDFRF 356 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTET 412 +T+RR+ ++L KV R HI+ GLL+A +D VI+I+R + + AL G + Sbjct: 357 ETIRRKSQFQLTKVNARSHIVAGLLMALDKVDMVIQIVRASADQQAAREALYIELGTSSE 416 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 Q +AIL+L+L L +L + K+ E+++LE+ R+ L +L + + +++++E + + Sbjct: 417 QTDAILKLQLGQLTRLNKGKLESEKADLEESRESLTHLLEVDDAVYDVMREEFIDMMKRF 476 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK------ 526 G +R+S + E+ + D++ + IV+++ G+++ ++ G + Sbjct: 477 GGERKSSII-VEDDGDFCDMDLIENSRSVIVVTRGGYIKRMPLKTFESQGRGTRGKRGTS 535 Query: 527 -----AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPG 579 A + ++ V G +Y + +P +G+P+ L + Sbjct: 536 DGGESADSEVAHCFTCNDHDTLLMVTQNGIAYGLRAYQVPIAGRTAKGQPIPSVLPVRGD 595 Query: 580 ATVDHMLM---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVI 636 + +L SD++ +++ ++ G+ + + G + TL + + + Sbjct: 596 EVITAILPVSEFSDEEYVVLTTEQGWIKRTPLDAFEKLSSRGLTIATLEDGDRLKWCHRV 655 Query: 637 EDASDMLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVLPPQ 695 + D +L T G F + L + +G + + + + + L+ + Sbjct: 656 RNEDD-ILIGTVGGMATRFGAAKLRPTGRTSRGVRAMKLREGDTIADMNVLSG----KNK 710 Query: 696 STLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 + + K + RG G + +R + S R D E Sbjct: 711 EYILTVTAQGYGKRIATSEFRAQA-RGGVGVIAIKFKRGQEEDKVSCLRIVKDDEE 765 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 81/231 (35%), Gaps = 20/231 (8%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN------YKAGDSFKA 533 ++ E A+ E ++ ++ GW++ + + GD K Sbjct: 592 VRGDEVITAILPVSEFSDEEYVVLTTEQGWIKRTPLDAFEKLSSRGLTIATLEDGDRLKW 651 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITL-PSAR-GQGEPLTGKLTLPPGATV--DHMLMES 589 + ++ ++ G + L P+ R +G + L G T+ ++L Sbjct: 652 CHRVRNEDDILIGTVGGMATRFGAAKLRPTGRTSRG---VRAMKLREGDTIADMNVLSGK 708 Query: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP-----ENAHVMPPVVIEDASDMLL 644 + + +L + GYG ++ A+ R G +I + E + + I + +L Sbjct: 709 NKEYILTVTAQGYGKRIATSEFRAQARGGVGVIAIKFKRGQEEDK-VSCLRIVKDDEEIL 767 Query: 645 AITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPP 694 IT G M+ SD+P + G + + + + Q + Sbjct: 768 VITARGIMVRQKASDIPSQGRSATGVMVQRVDDGDHISSVSIVPQYEEIDG 818 >UniRef50_B8BXG7 DNA topoisomerase IV, ATP/GTP binding site n=1 Tax=Thalassiosira pseudonana RepID=B8BXG7_THAPS Length = 820 Score = 734 bits (1896), Expect = 0.0, Method: Composition-based stats. Identities = 240/775 (30%), Positives = 399/775 (51%), Gaps = 55/775 (7%) Query: 19 LNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHG 78 + Y++ +I+ RALP DG+KPV RRI+YAM+ LGL+ S ++K AR VG+VLGKYHPHG Sbjct: 1 MQYALSIILGRALPDARDGMKPVHRRILYAMNGLGLSPSGSYRKCARVVGEVLGKYHPHG 60 Query: 79 DSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY-SELLLSELG 137 D+A Y+A+V +AQPFS PL+DG GN+G+ D AAMRYTE RL++ +E LL ++ Sbjct: 61 DTAVYDALVRLAQPFSTNIPLIDGHGNFGSID-NDPAAAMRYTECRLTRIAAETLLDDIL 119 Query: 138 QGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALID 197 T +++PNFDG+ EP +LPA++P +LLNG GIAVGMAT++PPHNL E+ A +AL Sbjct: 120 MDTVEFLPNFDGSEYEPSVLPAKVPILLLNGGAGIAVGMATNVPPHNLGELMDACVALTK 179 Query: 198 -----QPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED--- 249 + T +LL I+ PD+PT A II ++ R +Y G G V MRAV E+ Sbjct: 180 GRNEGGEEVTDGKLLQIIPAPDFPTGACII-GKSGSRSLYTTGNGGVVMRAVMHLEEVPT 238 Query: 250 ---------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 A++++ LP+QV+ A +LE+IA + KKL + DLRDESD + R+VI Sbjct: 239 SSGKKKSTRNAIIVTELPYQVNKAALLERIAILVNEKKLEGIADLRDESDRDG-IRMVIE 297 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDG-RPAVKNLLEILSEWLVFRRDTVR 359 + + V V N+L T L+ ++ N + G P L E L +L FR T+R Sbjct: 298 LKRDAV-AAVVQNNLLKKTSLQTTFSGNFLALFGGGTNPQRFTLREALDCFLDFRFQTIR 356 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMS----RFGLTET 412 + ++L+KV R HI+ GLL+A + DEVI I+RN + + ALMS + GL+ Sbjct: 357 NKCAFQLDKVENRAHIVAGLLIALESTDEVIAIVRNAPDQASARAALMSTDNPKLGLSSA 416 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QA+A+L+L+L L +L K+ E+ L++ + L+ +L ++ + + + +E A + + Sbjct: 417 QADAVLKLQLGQLTRLNGDKLNDEKKTLDESQTNLRNLLTNDAAVRDTMLEEFMAMKKRF 476 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK------ 526 G R++ + EE ++ D++ +E IV+++ G+++ ++ + Sbjct: 477 GTPRKTKILPDEE--DKADIDLVQNERSVIVVTRGGYIKRMPLKTFESQNRGTRGKRGTS 534 Query: 527 ----AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGA 580 ++ + V+ +G +Y + +P +G P+ L + Sbjct: 535 NTISDDNAVAHCFTCNDHDTVLMTTQSGVAYGLRAYQVPEGGRTARGAPIPSVLPVKSDD 594 Query: 581 TVDHMLMESD---DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIE 637 + +L S+ ++ +++A++ G+ + G + TL + + Sbjct: 595 VITSVLPVSEFSKNEFIVLATEYGWIKKTPLAAFEKLTQRGLIIATLADGDRLNWCEKCT 654 Query: 638 DASDMLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVLPPQS 696 D D +L + G+ F +DL ++ +G K + + + + L Sbjct: 655 DNDD-ILVGSTRGQATRFKAADLRPTARTSRGVKSMTLKKGDTIADMNVLR-----KEDK 708 Query: 697 TLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 + + + K E + T RG G + + + S R + D E Sbjct: 709 FVLVVTTEGYGKRVLTEEFR-TTARGGSGVIAIKFKAGRVDDRISTMRVVNEDDE 762 Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 83/231 (35%), Gaps = 21/231 (9%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN------YKAGDSFKA 533 ++ + ++ ++ ++ GW++ + GD Sbjct: 590 VKSDDVITSVLPVSEFSKNEFIVLATEYGWIKKTPLAAFEKLTQRGLIIATLADGDRLNW 649 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITL-PSAR-GQGEPLTGKLTLPPGATVDHM-LMESD 590 K N ++ + G++ L P+AR +G +TL G T+ M ++ + Sbjct: 650 CEKCTDNDDILVGSTRGQATRFKAADLRPTARTSRG---VKSMTLKKGDTIADMNVLRKE 706 Query: 591 DQKLLMASDAGYGFVCTFNDLVARNRAG--KALITLPEN--AHVMPPVVIEDASDMLLAI 646 D+ +L+ + GYG + R G I + + + + D +L I Sbjct: 707 DKFVLVVTTEGYGKRVLTEEFRTTARGGSGVIAIKFKAGRVDDRISTMRVVNEDDEILLI 766 Query: 647 TQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQS 696 T G ++ VSD+ + G + + R D ++ + ++P + Sbjct: 767 TSQGVIVRQKVSDISCQGRAATGVLVQKVD----VRSGDSISTVSIVPKED 813 >UniRef50_B2URM6 DNA gyrase, A subunit n=5 Tax=Verrucomicrobia RepID=B2URM6_AKKM8 Length = 873 Score = 734 bits (1894), Expect = 0.0, Method: Composition-based stats. Identities = 235/813 (28%), Positives = 380/813 (46%), Gaps = 81/813 (9%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 ++ + + + ++L+YSM VI+ RALP + DGLKP QRRI+YAM EL L+ K + Sbjct: 3 NNRIKPVDVASELSTSFLDYSMSVIISRALPDVRDGLKPSQRRILYAMKELNLSPGGKTR 62 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K ++ VGD +G YHPHGD+A Y +V MAQ +S R LV GQGN+G PD AA RYT Sbjct: 63 KCSKIVGDTMGNYHPHGDAAIYGTLVNMAQDWSMRDILVIGQGNFGTPDGDPPAAA-RYT 121 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E++LS L+++L + T D+VP +D EP + P+ PN+L+NG TGIAVGMAT++P Sbjct: 122 EAKLSGMGVALMADLDKDTVDFVPTYDNEHTEPTVFPSAFPNLLVNGGTGIAVGMATNMP 181 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNL EV A+ID P T+++L ++GPD+PT +++ + I + GRGSVR+ Sbjct: 182 PHNLGEVVDGICAVIDNPHMTVEELRQYIKGPDFPTGGDVLGF-SGIDNYFRTGRGSVRI 240 Query: 242 RAVWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 R E ++I +P+ V+ A + E+IA ++K L + +RD SD + Sbjct: 241 RGKIDMEVTDSGKDLLIIREVPYGVNRAALQERIAELYKDKILTDISGIRDLSDEKT--- 297 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 + + VMN L+ T +E S+ +N+ I D RP +++ ++ ++ RR+ Sbjct: 298 CIEIELKRDARPQVVMNQLYKLTSMETSFAVNMLAI-HDNRPKTLAMMDAINFYIEHRRE 356 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALM--------- 404 V RR Y L K LE L+A ++D+ I IIR+ DE + L Sbjct: 357 VVVRRTRYLLGDAEKDAERLEAFLLALHHMDDFISIIRDSKNRDEARERLQNYTFSTQTA 416 Query: 405 ---------------SRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQG 449 R+ TE Q +IL+L+L L LE KI GE +EL Sbjct: 417 ESLGILIRSQASIQGDRYVFTERQVNSILDLRLYQLTALENDKISGEYAELLVRIKDYLD 476 Query: 450 ILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGW 509 ILA+E ++ ++K EL+A Y R + + + M+ D++P++ + + ++ G+ Sbjct: 477 ILANESRVLGIVKDELKAIKDKYATPRVTRII--PFSGDMAIEDLIPNDTMIVTITHSGY 534 Query: 510 VRSAKGHDIDAPGLNYK--------------AGDSFKAAVKGKSNQPVVFVDSTGRSYAI 555 ++ + K D + +++ ++F +TGR Y Sbjct: 535 IKRTNSAEYRVQARGGKGVKAATTRGAKKDAEADFIEHLFAAQNHDYLMFFTNTGRVYVD 594 Query: 556 DPITLPSA--RGQGEPLTGKLTLPPGATVDHMLME--------------SDDQKLLMASD 599 + A QG + L L P + +L ++ A+ Sbjct: 595 RVYEIDEAARSAQGRNIKNLLDLQPEEAIAAILRLERRVDEKGNDITFAEGSGNVVFATK 654 Query: 600 AGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD 659 G + ND +AG I L E ++ + +D ++ +T G + FP D Sbjct: 655 DGTVKKTSLNDFANYRKAGIIAINLEEGNSLVNAEL-TSGADEIVLVTHDGMSIRFPEED 713 Query: 660 LPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVT 718 L + G + I + D + L ++ PQ TL + K + + Sbjct: 714 LRTQGRNTIGVRGIRPRAG------DYVVALAIVDPQKTLLVASENGLGKRTSFDEYRTQ 767 Query: 719 GERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 GR GT ++ + D+ S + E Sbjct: 768 ---GRGGTGIKTMNCTDKTGKVVSATVVSDEDE 797 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 78/197 (39%), Gaps = 12/197 (6%) Query: 501 TIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYA 554 + ++ G V+ +D +N + G+S A +V V G S Sbjct: 649 VVFATKDGTVKKTSLNDFANYRKAGIIAINLEEGNSLVNAELTSGADEIVLVTHDGMSIR 708 Query: 555 IDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVAR 614 L + +G+ + G V + + + LL+AS+ G G +F++ + Sbjct: 709 FPEEDLRT-QGRNTIGVRGIRPRAGDYVVALAIVDPQKTLLVASENGLGKRTSFDEYRTQ 767 Query: 615 NRAGKALITLPENAH---VMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKG-KGNK 670 R G + T+ V+ V+ D D L+ +T AG+ + V+ + + + +G K Sbjct: 768 GRGGTGIKTMNCTDKTGKVVSATVVSD-EDELMLMTTAGQSVRIKVATVRETGRATQGVK 826 Query: 671 IINIPSAEAARGEDGLA 687 ++ + E+ + + Sbjct: 827 LMTLNEGESIQDISIVI 843 >UniRef50_B5RLZ1 DNA gyrase, subunit A n=5 Tax=Borrelia RepID=B5RLZ1_BORDL Length = 815 Score = 734 bits (1894), Expect = 0.0, Method: Composition-based stats. Identities = 252/772 (32%), Positives = 417/772 (54%), Gaps = 37/772 (4%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 + + + + +YLNY+M VI+ RALP + DGLKPV RRI+Y+M E+GL + FK Sbjct: 12 KEQVLNIKIEDEVRTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMHEMGLKSDKSFK 71 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K+ R VGDVLGKYHPHGD + YEA+V +AQ FS RYP+V GQGN+G+ D AAMRYT Sbjct: 72 KAGRIVGDVLGKYHPHGDQSIYEALVRLAQDFSLRYPIVSGQGNFGSIDG-DPPAAMRYT 130 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+R++K +E L+ ++ + T ++ PN+D +L EP++LPA P +L+NG++GIAVGMAT++ Sbjct: 131 EARMAKIAEELVIDIDKQTVNFKPNYDDSLLEPEVLPAAFPFLLVNGSSGIAVGMATNMA 190 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNLREV A I +++ ++ L+ I++GPD+PT AEII + I K Y G+GSV + Sbjct: 191 PHNLREVCDAIIYMLEHDDVSIYDLIAIIKGPDFPTYAEIIYNENLI-KAYTTGKGSVVI 249 Query: 242 RAVWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 RA + E+ +++I+ +P+ V+ + +L +IA ++ +KL V D+RDESD E Sbjct: 250 RARYHIEEKSEDNISIIITQIPYAVNKSSLLMKIALLIKEEKLEGVSDIRDESDREGIRI 309 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 ++ + + D VMN L+ T+L +++ IN N+ ++G P NL E++SE++ R++ Sbjct: 310 VLEIKK--GFDPHVVMNLLYEYTELRRNFSIN-NLALVNGIPKQLNLRELISEFIEHRKN 366 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQ 413 +RRR+ + L++ ++ HILEGL +A NID VIEIIR + + +M F L+E Q Sbjct: 367 ILRRRVEFDLKRAQEKAHILEGLNIALRNIDRVIEIIRFSRLVKDARECIMREFQLSEIQ 426 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 A +IL++KL+ L LE KI + + + IL S ++ N++++E+ + +G Sbjct: 427 ANSILDMKLQKLTSLEVAKIEEDFQVVLALIKDYEDILISPSRIVNMIREEIINLSLKFG 486 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK------- 526 DDRR+ + EE S D++ E V ++L++ G+++ + G+ K Sbjct: 487 DDRRTKIIYDEEVLKTSMSDLMQRENVIVILTKQGFIKRVLQDEYKLQGIGGKGLGSFDL 546 Query: 527 -AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVD 583 D A+ ++ ++ + + G+ Y I+ + S +G+ + + L + Sbjct: 547 QDSDQVNVALCVNTHDFLLMISNEGKLYVINAYGIKDSSRTSRGQNIRELINLGEKEEIL 606 Query: 584 HMLMESD---DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDAS 640 + S+ D LL+ + G G ++ L + V ++ Sbjct: 607 AIKNCSELSVDNYLLITTANGKIARIETEGFKTVKSRGVIIMKLDDKDFVTSAEIV-SRD 665 Query: 641 DMLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT 699 D ++ I++ G F +D+ +G +G + + D L + + S L Sbjct: 666 DKIICISKKGNAFAFSSNDIRLTHRGTQGVSGMKVREG------DMLIKALAIKQGSHLL 719 Query: 700 IHVGKRKIKLRPEELQKVTG-ERGRRGTLMRGLQRIDRVEIDSPRRASSGDS 750 I K E+ KVTG +RG G E+ S D Sbjct: 720 IMSENGYGKR--LEVSKVTGLKRGSTGYTCYKKSDEKAGEVVDAITVSQDDE 769 Score = 77.3 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 29/219 (13%), Positives = 75/219 (34%), Gaps = 13/219 (5%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKA 533 L E+EE A+ L + ++ + G + + + D + Sbjct: 599 LGEKEEILAIKNCSELSVDNYLLITTANGKIARIETEGFKTVKSRGVIIMKLDDKDFVTS 658 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQK 593 A + ++ + G ++A + +G + + G + L Sbjct: 659 AEIVSRDDKIICISKKGNAFAFSSNDI-RLTHRGTQGVSGMKVREGDMLIKALAIKQGSH 717 Query: 594 LLMASDAGYGFVCTFNDLVARNRAGKALITLPENAH----VMPPVVIEDASDMLLAITQA 649 LL+ S+ GYG + + R ++ V+ + + D +L I+++ Sbjct: 718 LLIMSENGYGKRLEVSKVTGLKRGSTGYTCYKKSDEKAGEVVDAITV-SQDDEILLISKS 776 Query: 650 GRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLA 687 ++L V + + K +G +++++ + + Sbjct: 777 SKVLRTLVDKISEQGKDARGMQVLSLDEDKLVAVSKFIK 815 >UniRef50_A4JTQ2 DNA topoisomerase IV subunit A n=34 Tax=Proteobacteria RepID=A4JTQ2_BURVG Length = 808 Score = 734 bits (1894), Expect = 0.0, Method: Composition-based stats. Identities = 324/750 (43%), Positives = 464/750 (61%), Gaps = 33/750 (4%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 R+ + + E AYL+Y+M V+ R LP + DG KPVQRR++YAM+++GL A+AK KSAR Sbjct: 56 RIPIGGWAERAYLDYAMSVVRGRTLPDVEDGQKPVQRRLLYAMNDMGLTATAKPVKSARV 115 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VGDVLGKYHPHGD + Y+A+V +AQ FS RYPL+DGQGN+G+ D AAMRYTE+RL+ Sbjct: 116 VGDVLGKYHPHGDQSAYDALVRLAQDFSMRYPLIDGQGNFGSRDG-DGAAAMRYTEARLT 174 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 +++LLL+E+ QGT D+ PN+DG +EP +LPARLP +LLNG +GIAVGMATDIP HNLR Sbjct: 175 PFADLLLAEIDQGTVDFQPNYDGAFEEPSLLPARLPVLLLNGASGIAVGMATDIPSHNLR 234 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 EVA A LI +P T ++ ++ GPDYP A+II+ A+I K+YE GRGS+R+RA W Sbjct: 235 EVADACSLLIRRPDATFGDVMSVLPGPDYPGGAQIISDIADIHKVYEGGRGSLRVRARWS 294 Query: 247 KED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPM------------------VD 283 E + ++ LPH VS +VLE+I K +D Sbjct: 295 LEQLARGQWQIAVTELPHGVSTQKVLEEIEELTNPKIKAGKKALTQEQGNMKALLLSVLD 354 Query: 284 DLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNL 343 +RD+SD ++P R+V P S+R +Q+MN L A T LE + +NL IGLDGRP K + Sbjct: 355 SVRDDSDEKHPVRIVFEPHSSRQTPEQLMNVLLAHTSLECNASVNLVTIGLDGRPQQKGI 414 Query: 344 LEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPAL 403 + L+EW+ FR TV RR +RL +V +R+HIL+G ++AFLNID+VI++IR DEPK L Sbjct: 415 VPALTEWVEFRYRTVTRRTEHRLAEVERRIHILDGRMIAFLNIDQVIKVIRESDEPKRDL 474 Query: 404 MSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKK 463 ++ F L+E QAE ILE++LR LA+LE +KI E ++L+ E+ LQ +LA M N + K Sbjct: 475 IATFHLSEVQAEDILEIRLRQLARLEGIKIEKELAQLQDEQRHLQSLLADRAAMTNQILK 534 Query: 464 ELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGL 523 E++AD Q +GDDRR+ L E E +PVTI++S+ GW+R+ GH ID L Sbjct: 535 EIEADKQKFGDDRRT-LIESAEKVTSGAVVPTADDPVTIIVSRSGWLRARSGHGIDISTL 593 Query: 524 NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVD 583 +KAGD A+++ +++ + D+ GR Y + +P+ RG G PLT + L G + Sbjct: 594 TFKAGDDLLASIETRTSTSLAVFDTNGRCYNVASALIPTGRGDGVPLTSLIELQGGGRLT 653 Query: 584 HMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDML 643 H+++ L+AS GYG+VC DL+ R +AGKA TL + PP I D + Sbjct: 654 HVIVIDQTANYLIASSGGYGYVCAGADLLTRQKAGKAFATLEPGEVMHPPAKIAG--DTV 711 Query: 644 LAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVG 703 A+ GR+++FP+S++ + KGKG K++ + + + L + + S + Sbjct: 712 SAVCSGGRLVLFPLSEVKVMPKGKGVKLMELEAR------ETLVAVAIGDGASCIVSTTS 765 Query: 704 KRKIKLRPEELQKVTGERGRRGTLMRGLQR 733 + I L L K R R+G + G + Sbjct: 766 GKPIALTGTALDKYRLHRARKGCQLPGKAK 795 >UniRef50_C0ZEN0 DNA topoisomerase IV subunit A n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZEN0_BREBN Length = 847 Score = 732 bits (1891), Expect = 0.0, Method: Composition-based stats. Identities = 215/764 (28%), Positives = 378/764 (49%), Gaps = 31/764 (4%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 +S+ + E + +Y+ VI+ RA+P DGLKPVQRRI+YAM + G + Sbjct: 2 LSNQIINQSFAEIMGKRFGDYANLVILSRAIPDARDGLKPVQRRILYAMYQEGNTNDKPY 61 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 +KSA+TVG V+G YHPHGDSA YE MV MAQ + R L+ G GN+G+ D AAMRY Sbjct: 62 RKSAKTVGYVMGTYHPHGDSAIYETMVRMAQWWKMRQVLIQGHGNFGSLDA-DPPAAMRY 120 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TESRLS + LL ++ + T ++PN+D + Q+P +LP+R PN+L+NG GIAVG ATDI Sbjct: 121 TESRLSALANELLRDIEKDTVTFIPNYDNSAQQPAVLPSRFPNLLVNGAAGIAVGFATDI 180 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 P HNL EV AA+A + P +LD+L+ V+GPD+PT I+ + IRK +E GRG Sbjct: 181 PTHNLGEVIDAAVAQMKNPNISLDELMQHVKGPDFPTGG-IVQGLSGIRKAFETGRGQFI 239 Query: 241 MRAVWKKED------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHEN- 293 +R E+ +V+S +P++V ++++ QI + +K+ +RDE+ + Sbjct: 240 IRGKTHVEEPKGGKIKKIVVSEIPYEVVKSKLVGQIDELVMERKIEGALAVRDETGRKEA 299 Query: 294 --PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWL 351 ++V D ++N+L+ TDL+ Y N+N+I +G L +L ++ Sbjct: 300 EQKKVRIVVDIRKEADEQAILNYLYKNTDLQIYYNYNMNVI-HEGTIRQMGLKALLGAYI 358 Query: 352 VFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFG 408 +++ V R Y L++ R HI+EGL+ A + ++++ I + + + K +M ++G Sbjct: 359 DHQKEVVTNRCQYDLDRKQSREHIVEGLIRAKSILRQIVDTIMDSEDRADAKKNIMEKYG 418 Query: 409 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 T+ QA+AIL ++L L +L+ +K+ E + L KE ++L+ ILASE+K+ ++ EL Sbjct: 419 FTDNQADAILSIQLASLTRLDIVKLEKELATLAKEIEELKSILASEKKLIQVITGELNEI 478 Query: 469 AQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNY--- 525 + Y ++R + +Q E + + +E + L+ G+++ + G Sbjct: 479 KKKYAEERLTEIQGEIEEIKIDIAMQINAEDCIVTLTNEGYIKRTSPRSFKSVGGTLETC 538 Query: 526 --KAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGAT 581 K GD + ++ ++ +F G+ +A P + + G L + L Sbjct: 539 GVKEGDRVRYFMETNTSHTALFFTQDGKYFATLVNAFPDDKWKDIGSALVNIIPLEKNQR 598 Query: 582 VDHMLMESDDQKLLM---ASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIED 638 + + + ++ L S G ++ + L V + D Sbjct: 599 IVGFTIVENFKQPLYVYHVSKNGLMKKTALSEYETNRSSALVAAKLKGGDDEFMNVFVAD 658 Query: 639 ASDMLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVLPPQST 697 + +L T+ G + F S++ + G K I + + + ++ Sbjct: 659 EAGAILGATKDGMGIRFQRSEVSATGRASSGVKAIALAPGDDVITMLPIEEV----DSRA 714 Query: 698 LTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDS 741 ++ + +K + R +G + ++ + E+ + Sbjct: 715 FSLLTAEGVVKRTAIGAIPLQA-RAGKGVQLIRKRKNNPHELVA 757 >UniRef50_Q2NJM2 DNA gyrase subunit A n=5 Tax=Candidatus Phytoplasma RepID=Q2NJM2_AYWBP Length = 835 Score = 730 bits (1886), Expect = 0.0, Method: Composition-based stats. Identities = 225/770 (29%), Positives = 389/770 (50%), Gaps = 35/770 (4%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + + L E + ++L+Y+M VI+ RALP I DGLKPVQRRI+Y+M ELG+ + A +KK+ Sbjct: 21 KIQEVNLSEEMKKSFLSYAMSVIVSRALPDIKDGLKPVQRRILYSMKELGVYSHASYKKA 80 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VGDV+GKYHPHGDS+ YEAMV MAQ FSYRYPLVDG GN+G+ D K AAMRYTE Sbjct: 81 ARVVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGHGNFGSIDGDK-AAAMRYTEV 139 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 +++K + L+ + + T D+V N+DGT +EP +LP LPN+L+NG TGIAVGMAT IP H Sbjct: 140 KMAKMAMELIKNIDKETIDFVDNYDGTEKEPLVLPTALPNLLINGATGIAVGMATKIPTH 199 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL EV I I+ ++D+L+ ++GPD+PT E++ ++ Y G+G+V ++A Sbjct: 200 NLGEVIDGLINYINNKDISIDELMQHIKGPDFPTGGELL-GLQSLKSAYHTGQGAVILKA 258 Query: 244 VWKK----EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 +++++ +P+QV ++E+IA ++NK + + DLRDES + ++ Sbjct: 259 KSHVLEERGKTSIIVTEIPYQVKKTDLIEKIAFLVKNKIVEGITDLRDESSRKGMKIVIE 318 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 + R + ++N L+ + L S+ IN+ + + P + +L +IL + FR + + Sbjct: 319 LKR--DANAKIILNKLYKHSQLRISFGINM-VALVGKTPQLVSLKQILEAFFNFRIEVIN 375 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKP---ALMSRFGLTETQAEA 416 R+ ++ L+K R H++ L+ +I+ I++I+ + K LM ++ E Q++A Sbjct: 376 RQKSFELKKASARKHLVTALITILEDIEIAIKLIKTSTDVKEAQRKLMQKYNFDEIQSKA 435 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDR 476 ILE+ L+ L+ E K+ E+ L +E + + I+ S++K +L+KEL + Y DDR Sbjct: 436 ILEMSLQRLSNQETQKLITEEKNLTQEILECKSIIDSQKKKERILEKELLEMKKKYQDDR 495 Query: 477 RSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS--------AKGHDIDAPGLNYKAG 528 ++ L + + D++ +P+ I ++ G+++S K G+ Sbjct: 496 KTTL-NFDAPLNFEDEDLIEKKPIIITITNKGYIKSMDIDTYKQQKRGGQGVSGMKIYEE 554 Query: 529 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHML 586 D + ++ +F + G+ Y + +P + +G L L + Sbjct: 555 DFIEHLAITSTHDYHLFFTNKGKVYQLKGYEIPLGQRQSKGSHLVNFLPFEKDEFLTSFT 614 Query: 587 MESD----DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM 642 + L A+ G + ++ G I L EN V+ Sbjct: 615 SIKNFDQSQDYLFFATKKGIVKKTPLKEYSHISKRGLIAIRLKENDEVLTVKKTT-GIKN 673 Query: 643 LLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 ++ + G + F + + +S+ G + + S E G V + + + Sbjct: 674 IILASNNGNAICFCETKIKSISRNSMGVIGMRLGSDEFLVGAAL---FDVDSKEQNILVM 730 Query: 702 VGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 K+ ++ R G + ++ D+ + + Sbjct: 731 TENGFGKITNVNQYRIQ---ARSGKGSKTIKVNDQKGRLITLQVVLPSDD 777 >UniRef50_C9Z0I9 GyrA-like gyrase subunit n=9 Tax=Actinomycetales RepID=C9Z0I9_STRSW Length = 818 Score = 730 bits (1885), Expect = 0.0, Method: Composition-based stats. Identities = 247/764 (32%), Positives = 387/764 (50%), Gaps = 41/764 (5%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + + + + + ++L Y+ VI RALP DGLKPV RRIVY M+E+GL + K Sbjct: 17 ERILDIDVVDEMQGSFLEYAYSVIYSRALPDARDGLKPVHRRIVYQMNEMGLRPDRGYVK 76 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 AR VG+V+GK HPHGDS+ Y+A+V +AQPFS R PLVDG GN+G+ + AAMRYTE Sbjct: 77 CARVVGEVMGKLHPHGDSSIYDALVRLAQPFSMRLPLVDGHGNFGSLGNDDPPAAMRYTE 136 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 R++ + L+ + + T D+ PN+DG QEP LPA PN+L+NG +GIAVGMAT++PP Sbjct: 137 CRMADATSLMTESIEENTVDFSPNYDGQEQEPVALPAAFPNLLVNGASGIAVGMATNMPP 196 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HNL EV AA LI P LD L+ V GPD PT I+ + IR Y GRG+ ++R Sbjct: 197 HNLGEVIAAARHLIRYPNADLDTLMKHVPGPDLPTGGRIV-GLSGIRDAYATGRGTFKIR 255 Query: 243 AVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 A ++ ++++ LP V +V+ +I + KKL + D++D +D + RL Sbjct: 256 ATVTVDNVTARRKGLIVTELPFTVGPEKVIAKIKDLVGAKKLQGIADVKDLTDRAHGLRL 315 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 VI ++ V + V+ L+ T +E+S+ IN N+ +DG+P L E+L +L R + Sbjct: 316 VIEIKNGFV-PEAVLEQLYKLTPMEESFGIN-NVALVDGQPLTLGLKELLEVYLDHRFEV 373 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQA 414 VRRR +R K RLH++EGLL A ++IDEVI +IR+ D + K L+ RF L++ Q Sbjct: 374 VRRRSEFRRGKRRDRLHLVEGLLTALVDIDEVIRLIRSSDNSAQAKERLIERFALSDIQT 433 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 + IL+ LR L + + +++ E+ +L E +L IL S+ ++ L+ EL A A+ +G Sbjct: 434 QYILDTPLRRLTRFDRIELESEKEKLNTEIAELTRILESDAELRKLVSGELAAVAKKFGT 493 Query: 475 DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSA---KGHDIDAPGLNYKAGDSF 531 +RR+ L E + + + +P ++LS G + + D G K D Sbjct: 494 ERRTVLLESSGTQVAAVPLQVADDPCRVLLSSTGLLARTASAEPFTADEDGRRTK-HDVI 552 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--------RGQGEPLTGKLTLPPGATVD 583 +AV + V V STGR ++ + LP G PL LTL G T+ Sbjct: 553 VSAVPATARGEVGAVTSTGRLLRLNVVDLPQLPDTSAAPNLSGGAPLAEFLTLQDGETLV 612 Query: 584 HMLMESD-DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM 642 ++ + L + ++ G + N+ +I+L E ++ V + + Sbjct: 613 CLMTLDESSPGLAIGTEQGVVKRVVPD--YPSNKEELEVISLKEGDRIVGAVELRTGEED 670 Query: 643 LLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 L+ IT ++L + + + + G I + + + + Sbjct: 671 LIFITDDAQLLRYQAAQVRPQGRPAGGMAGIKLTEGAKVISFTAIDPAV----DAVVFTV 726 Query: 702 VGKR---------KIKLRPEELQKVTGERGRRGTLMRGLQRIDR 736 G R KL P + G R G + + + Sbjct: 727 AGSRGTLDDSVQTTAKLTPFDQYPRKG-RATGGVRCQRFLKGED 769 >UniRef50_Q89AS3 DNA gyrase subunit A n=11 Tax=Proteobacteria RepID=GYRA_BUCBP Length = 847 Score = 730 bits (1885), Expect = 0.0, Method: Composition-based stats. Identities = 248/803 (30%), Positives = 405/803 (50%), Gaps = 73/803 (9%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 ++ + + +N+YL+Y+M VI+ RALP + DGLKPV RRI++AM L + + +KKSA Sbjct: 8 IIKIDIEDELKNSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKVLNNDWNKTYKKSA 67 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 R VGDV+GKYHPHGD+A Y+A+V MAQPFS RY L+DGQGN+G+ D S AAMRYTE R Sbjct: 68 RIVGDVIGKYHPHGDTAVYDAIVRMAQPFSLRYVLIDGQGNFGSIDG-DSAAAMRYTEIR 126 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 +SK + LL++L + T + N+DGT + P++LPA++PN+L+NG++GIAVGMAT+IPPHN Sbjct: 127 MSKIAYELLNDLDKNTVSFFSNYDGTEKIPEVLPAKIPNLLINGSSGIAVGMATNIPPHN 186 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 ++EV +A ID TL +L++ + GPD+PT I + I K Y+ G+G + +RA Sbjct: 187 IKEVINGCLAFIDDQNITLKKLMEHIPGPDFPTAGLI-NGKRGIEKAYKTGKGKIYIRAK 245 Query: 245 WKKE------DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 E +++I LP+QV+ ARV++ IA ++ KK+ + LRDESD E ++ Sbjct: 246 SIIEIQKKTKKKSIIIYELPYQVNKARVIKGIANLVKEKKIEGITTLRDESDKEGMRIVI 305 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + + + ++N L++ T LE S+ IN+ + G+P V L EIL+ ++ RR + Sbjct: 306 EIKKET--KAEIILNQLYSLTQLEISFGINMVALIH-GQPKVMTLKEILNAFINHRRKII 362 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALM----------- 404 RR + L K+ K++HILEGL+++ NID +I +I+ +E K L Sbjct: 363 MRRSLFELNKIRKKIHILEGLIISLDNIDLIINLIKKSSTLEEAKNKLKTYHWYSKHAQY 422 Query: 405 -----------------------SRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELE 441 +F LT Q +AILEL+L+ L LE K+ E +L Sbjct: 423 TQILKKNAHSLTPYDKKLRPIDTQKFFLTPEQIQAILELRLQKLTHLEHKKLISEYKQLF 482 Query: 442 KERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVT 501 K + L+ IL + + ++K EL +GD RR+ + ++ D++ E V Sbjct: 483 KTSNNLENILKNNNILTKIMKDELIKIRDNFGDKRRTKI--NVNYSDINTSDLINKENVV 540 Query: 502 IVLSQMGWVRSAKGHDIDAP--------GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSY 553 I LS G+V+ +A + K D + + ++ ++ S G Y Sbjct: 541 ITLSYSGYVKYQLLSSYEAQKRGGKGKLAVKTKEEDFIENLLVANTHDIILCFSSKGILY 600 Query: 554 AIDPITLPSAR--GQGEPLTGKLTLPPGATVDHMLM---ESDDQKLLMASDAGYGFVCTF 608 + LP A +G P+ L L + +L D + MA+ G + Sbjct: 601 WMKVYQLPEASRHARGRPIVNLLPLSSNERITAILPISEYKDSINIFMATSKGMVKKTSL 660 Query: 609 NDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGK- 667 + G I L + ++ + + ++ ++ T G+ + F + + + Sbjct: 661 YEFKKPRTKGIIAINLKADDELIGVSL-TNGNNTIMLFTAQGKAVHFSEILVRKTGRTAI 719 Query: 668 GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTL 727 G + I I D + L V + + K + R +GT+ Sbjct: 720 GVQGIKIKK------SDKVVSLVVPKKHGNILLITEHGYGKRTEIHEFPIK-SRATQGTI 772 Query: 728 MRGLQRIDRVEIDSPRRASSGDS 750 + + + + + + + D Sbjct: 773 AMKITKKNGI-VIGTMQVVNQDQ 794 Score = 76.9 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 72/212 (33%), Gaps = 12/212 (5%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSA------KGHDIDAPGLNYKAGDSFKA 533 L E A+ + + G V+ K +N KA D Sbjct: 625 LSSNERITAILPISEYKDSINIFMATSKGMVKKTSLYEFKKPRTKGIIAINLKADDELIG 684 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPL-TGKLTLPPGATVDHMLMESDDQ 592 N ++ + G++ + + + + + + V +++ Sbjct: 685 VSLTNGNNTIMLFTAQGKA--VHFSEILVRKTGRTAIGVQGIKIKKSDKVVSLVVPKKHG 742 Query: 593 KLLMASDAGYGFVCTFNDLVARNRA--GKALITLPENAHVMPPVVIEDASDMLLAITQAG 650 +L+ ++ GYG ++ ++RA G + + + ++ + D ++ IT AG Sbjct: 743 NILLITEHGYGKRTEIHEFPIKSRATQGTIAMKITKKNGIVIGTMQVVNQDQIIIITNAG 802 Query: 651 RMLMFPVSDLPQLSK-GKGNKIINIPSAEAAR 681 ++ V ++ L + +G II E Sbjct: 803 TLVRTRVLEIGILGRNTQGVIIIRTSKKEKVV 834 >UniRef50_D0B2I0 DNA topoisomerase IV subunit A n=40 Tax=Rhizobiales RepID=D0B2I0_BRUME Length = 770 Score = 729 bits (1882), Expect = 0.0, Method: Composition-based stats. Identities = 281/770 (36%), Positives = 429/770 (55%), Gaps = 47/770 (6%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + ER+ L E YL Y++ IM RALP + DGLKPV RRI++AM L LN + K Sbjct: 13 EHIERVDLKSALEERYLAYALSTIMHRALPDVRDGLKPVHRRIMHAMRLLRLNPDQAYAK 72 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 AR VGDV+GK+HPHGD++ Y+A+V +AQ F+ RYPLVDGQGN+G D + AAMRYTE Sbjct: 73 CARIVGDVMGKFHPHGDASIYDALVRLAQDFAVRYPLVDGQGNFGNIDG-DNAAAMRYTE 131 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +R+++ + LLL + + D+ P ++ +EP +LP PN+L NG+ GIAVGMAT+IPP Sbjct: 132 ARMTEVATLLLEGINENAIDFRPTYNEEDEEPIVLPGAFPNLLANGSAGIAVGMATNIPP 191 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLD----------------------IVQGPDYPTEAE 220 HN+ E+ +A+ LI+ P +++L+ V+GPD+PT Sbjct: 192 HNVAELCSSALYLINHPDAPVEELVTSPEQWAEIEQESKTDPAALLKCKVRGPDFPTGGI 251 Query: 221 IITSRAEIRKIYENGRGSVRMRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMR 275 ++ I + Y GRG+ R+RA W KE+ +V++ +P+QV +R++E+IA + Sbjct: 252 LVEEHGNILEAYRTGRGAFRVRARWHKEEGNRGTWVIVVTEIPYQVQKSRLIEKIAELLL 311 Query: 276 NKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLD 335 KKLP++DD+RDES + R+V+ P++ VD + +M LF T+LE +N+N++ Sbjct: 312 AKKLPLLDDIRDESAED--IRIVLEPKNRTVDPELLMESLFKLTELESRVSLNMNVLSHG 369 Query: 336 GRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRN 395 P V +L +L EWL R++ + RR +RL ++ KRL IL G L+A+LN+DEVI IIR Sbjct: 370 KVPNVLSLGAVLREWLEHRKEVLVRRSQFRLAEIEKRLEILGGFLIAYLNLDEVIRIIRE 429 Query: 396 EDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASER 455 EDEPK LM F LT+ QAE+IL ++LR L KLEE +IR E +L E+ L+G+LAS Sbjct: 430 EDEPKQELMRAFELTDVQAESILNMRLRSLRKLEEFEIRKEFDDLTAEKTDLEGLLASGT 489 Query: 456 KMNNLLKKELQADAQAYG-----DDRRSPLQEREE-AKAMSEHDMLPSEPVTIVLSQMGW 509 + + E++A + +G RR+ M+ EPVTIV+S+ GW Sbjct: 490 RQWKKISTEIKAVREKFGPTTRLGKRRTTFAHAPTHDLEDIHQAMIEREPVTIVVSEKGW 549 Query: 510 VRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEP 569 +R+ KGH D L++K GD K A ++ ++F + G+ + I TLP RG GEP Sbjct: 550 LRAMKGHLADFSTLSFKEGDKLKLAFHAETTDKLLFFTTGGKFFTIGANTLPGGRGHGEP 609 Query: 570 LTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAH 629 + + + + + KLL+ S G GF+ ++ VA R GK ++ + Sbjct: 610 IRILVDMENDQDILTAFVHDPSAKLLLVSHEGNGFIVPESEAVANTRKGKQVMNVKAPDE 669 Query: 630 VMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQL 689 + D + + + +ML+FP+SD+P++++GKG ++ G+ + Sbjct: 670 AKLCQRVSG--DHIAVVGENRKMLVFPLSDIPEMTRGKGVRLQKYKDG-------GVCDV 720 Query: 690 YVLPPQSTLTI-HVGKRKIKLRPEELQKVTGERGRRGTL-MRGLQRIDRV 737 L+ R EEL + G R G L +G R + Sbjct: 721 RTFAIADGLSWQDSADRTFNRSKEELVEWIGARASAGRLVPKGFPRSGKF 770 >UniRef50_A7HL65 DNA gyrase, A subunit n=4 Tax=Thermotogaceae RepID=A7HL65_FERNB Length = 823 Score = 729 bits (1881), Expect = 0.0, Method: Composition-based stats. Identities = 240/770 (31%), Positives = 415/770 (53%), Gaps = 33/770 (4%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 + L + +YL+YSM VI+ RA+P + DGLKPVQRRI+Y+M ELGL + FK Sbjct: 18 QNNVFERVLEDELVKSYLSYSMSVIIGRAIPDVRDGLKPVQRRIIYSMYELGLFHNKPFK 77 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K+AR VG+V+GKYHPHGDS+ YEA+V MAQP+ RY LV+GQGN+G+ D AAMRYT Sbjct: 78 KTARIVGEVMGKYHPHGDSSIYEALVRMAQPWLMRYSLVEGQGNFGSID-RDPPAAMRYT 136 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+RL K +E ++ ++ + T + NFDG+LQEP +LPA++PN+LLNG +GIAVGMAT+IP Sbjct: 137 EARLHKIAEEMVEDIDKQTVKMLDNFDGSLQEPDVLPAKVPNLLLNGASGIAVGMATNIP 196 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 HNL +V A IA I ++++L+DI++GPD+PT II ++ IR++Y G+G + Sbjct: 197 THNLNDVVDATIAYIKNRDISVEELIDIIKGPDFPTG-GIIIGKSGIREMYITGKGGFTI 255 Query: 242 RAVWKK----EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 R + + +++I+ +P+ +S A +++QIA ++ +++P V DLRDESD + + Sbjct: 256 RGKAEIKHEKKKKSIIITEIPYGISKAELIKQIADYLQEEEIP-VKDLRDESDKDGLRVV 314 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 + P V + ++N+L+ T+L+ + N +I D +P + NL +++ ++ R + Sbjct: 315 IEFP--EDVKEEVILNNLYQKTNLQTRFNANFLVIDGDKQPRLMNLKQLIEAYVKHRFEV 372 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQA 414 VR+R Y ++ KR HI+EGL+ A ID V+ IIR+ + A L+ ++E QA Sbjct: 373 VRKRTQYAYQQDSKRAHIVEGLIKASKAIDTVVSIIRSSKDSSEALSQLVDILQMSEEQA 432 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 +A+L+++L L LE ++ E +L ++ + +L ++ K+ ++ +EL+ + YGD Sbjct: 433 KAVLDMRLGRLTNLETQNLQQEYRDLLVRLEKEKELLMNDDKVYEVIIEELEEIKKKYGD 492 Query: 475 DRRSPLQEREE-AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK------- 526 R++ + + EE A + D++P++ + I L++ G+++ N K Sbjct: 493 PRKTEITDLEETATKFDKKDLIPNKDIVITLTKKGFLKLMDIDAFRTQRRNGKGVIGANL 552 Query: 527 -AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVD 583 D + K + +F S G+ Y I+ + + + +G+P+ + L G V Sbjct: 553 MEDDIISQIIYSKLHSKTLFFTSLGKVYEIENLDIEESNRGTKGKPINKYIKLENGERVL 612 Query: 584 HMLMESDD-QKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM 642 M+ +D +L + G + D G IT + ++ + I S+ Sbjct: 613 AMVDITDYVGELFFVTKKGVVKRTSLEDFKNITSKGIRAITFKDGDELVSVLRINSESNT 672 Query: 643 LLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 +L T+ G + F + ++ + + G + I + + L + Sbjct: 673 VLISTKLGMSIRFGIEEVRTMGRNAAGVRGIRLREGDEVISSTVLE-----NDNGYILTI 727 Query: 702 VGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 KL + ++ R G ++ + I++ +GD E Sbjct: 728 TENGYGKLTEVSDYR---KQSRDGLGIKNIGEIEKTGPIVGVAYVNGDEE 774 Score = 91.5 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 76/201 (37%), Gaps = 16/201 (7%) Query: 501 TIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKS-NQPVVFVDSTGRSY 553 +++ G V+ D + +K GD + ++ S + V+ G S Sbjct: 624 LFFVTKKGVVKRTSLEDFKNITSKGIRAITFKDGDELVSVLRINSESNTVLISTKLGMSI 683 Query: 554 AIDPITLPSARGQGEPLTGKLTL---PPGATVDHMLMESDDQKLLMASDAGYGFVCTFND 610 + R G G + + ++E+D+ +L ++ GYG + +D Sbjct: 684 RF---GIEEVRTMGRNAAGVRGIRLREGDEVISSTVLENDNGYILTITENGYGKLTEVSD 740 Query: 611 LVARNRAGKALITLPENAH--VMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGK- 667 ++R G + + E + V + + ++ T+ G + F VSD+P S+ Sbjct: 741 YRKQSRDGLGIKNIGEIEKTGPIVGVAYVNGDEEIVLFTKDGASIKFKVSDIPTRSRTAQ 800 Query: 668 GNKIINIPSAEAARGEDGLAQ 688 G K++N+ + + Sbjct: 801 GVKVMNLADGDIVADFAVIGG 821 Score = 56.8 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 45/134 (33%), Gaps = 3/134 (2%) Query: 510 VRSAKGHDIDAPGLNYKAGDSFKAAVKG-KSNQPVVFVDSTGRSYAIDPITLPSARGQGE 568 VR+ + G+ + GD ++ N ++ + G + G Sbjct: 690 VRTMGRNAAGVRGIRLREGDEVISSTVLENDNGYILTITENGYGKLTEVSDYRKQSRDGL 749 Query: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRA--GKALITLPE 626 + + + + + D+++++ + G +D+ R+R G ++ L + Sbjct: 750 GIKNIGEIEKTGPIVGVAYVNGDEEIVLFTKDGASIKFKVSDIPTRSRTAQGVKVMNLAD 809 Query: 627 NAHVMPPVVIEDAS 640 V VI Sbjct: 810 GDIVADFAVIGGEE 823 >UniRef50_B8CXA6 DNA gyrase subunit A n=1 Tax=Halothermothrix orenii H 168 RepID=B8CXA6_HALOH Length = 796 Score = 725 bits (1872), Expect = 0.0, Method: Composition-based stats. Identities = 242/755 (32%), Positives = 400/755 (52%), Gaps = 31/755 (4%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 M++ +A+ + +++YL+YS+ VI RALP + DGLKPV RRI+YA ELGL Sbjct: 1 MAEKIRSIAIEDKMKDSYLSYSLSVIASRALPDVRDGLKPVHRRILYAARELGLTHDKPH 60 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VG+VLGKYHPHGD++ Y+AMV MAQ F+ RY L+DG GN+G+ D S AAMRY Sbjct: 61 KKSARIVGEVLGKYHPHGDASVYDAMVRMAQYFNQRYCLIDGHGNFGSIDG-DSPAAMRY 119 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RL++ +E +++++ Q T D+V NFDG+LQEP++LP ++PN+L+NG +GIAVGM+T I Sbjct: 120 TEARLTELAEDIMADITQDTVDFVDNFDGSLQEPEILPTKVPNLLINGASGIAVGMSTSI 179 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL EV A + L+ P L+ ++ + GPD+PT A+I+ + I+K Y+ G G + Sbjct: 180 PPHNLGEVVDAMVHLLKHPNAKLETIMKYIPGPDFPTGAKIV-GLSGIKKAYKTGNGKIT 238 Query: 241 MRAVWKKE----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 +RA + E ++I +P+ ++ ++LE IA + K+ V DLRDESD E Sbjct: 239 LRARTQIEKKGRKKQIIIKEIPYHLNKVKLLEDIAELINKGKIDNVSDLRDESDQEGLRI 298 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 +V + + D D ++N L+ T L+ +YRIN+ + +P V +L+ IL ++ FRR Sbjct: 299 VVEL--KSGADPDIILNQLYKFTSLQTNYRINMLALD-GKQPRVMDLITILKNFINFRRQ 355 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQ 413 + RR Y+L K +R H+L+GL+ A +D VI IIR+ E + L + +TE Q Sbjct: 356 VITRRTKYKLNKAKERFHLLQGLITAIDKLDLVISIIRHSKSTKEARQKLQEKLVITEKQ 415 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 AEAIL ++L+ L +EE K+ E + LE++ + IL ++ +++ +LKKEL Y Sbjct: 416 AEAILRMRLQKLVGMEEEKLHQESAGLEEQIKYYKKILNNKNELDKVLKKELLDIKNKYA 475 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKA 533 D R++ + E EE + + D++ E V + S ++ + G D Sbjct: 476 DKRKTEIIEDEEKAIIEKTDLIKKEKVFLTFSYRQNIKRTTSSEYARAG----KNDYIID 531 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPS--ARGQGEPLTGKLTLPPGATVDHMLMESD- 590 + G + ++F +TG Y + +P G+ + L +P + ++ ++ Sbjct: 532 TMTGTTLDTLLFFTNTGDVYTLPVHKIPEHHGLSTGDNIKDFLKIPLSKKIVKVICLNEE 591 Query: 591 --DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQ 648 ++ + +A+ G + + I L + V+ I D + +L T+ Sbjct: 592 TKEKYITIATKQGMVKKTIGGEYQT-TYSRIKAIKLNKGDEVVGVE-ITDGNQEILLGTK 649 Query: 649 AGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKI 707 + + F + + G+ I + D + ++ +++ + Sbjct: 650 KAKTIRFEEDSVSDTGRNTIGSIGIKLAKG------DEVVSFNLVNNNTSVVSISKTGRG 703 Query: 708 KLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSP 742 K P E R +G G + Sbjct: 704 KRSPIEEYNPQ-NRNGKGLKTCGSSIYKMAGVICA 737 >UniRef50_O51396 DNA gyrase subunit A n=18 Tax=Borrelia burgdorferi group RepID=GYRA_BORBU Length = 810 Score = 724 bits (1869), Expect = 0.0, Method: Composition-based stats. Identities = 233/772 (30%), Positives = 413/772 (53%), Gaps = 36/772 (4%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 + + + + + +YLNY+M VI+ RALP + DGLKPV RRI+Y+M E+GL + FK Sbjct: 7 KEQILNVRIEDEIKTSYLNYAMSVIVSRALPDVRDGLKPVHRRILYSMYEMGLRSDKAFK 66 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K+ R VGDVLGKYHPHGD + Y+A+V +AQ FS RYP++ GQGN+G+ D AAMRYT Sbjct: 67 KAGRIVGDVLGKYHPHGDQSIYDALVRLAQDFSLRYPVIRGQGNFGSIDG-DPPAAMRYT 125 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+++ K +E ++ ++ + T ++ N+D +L EP+++P+ P +L+NG++GIAVGMAT++ Sbjct: 126 EAKMEKITEYIVKDIDKETVNFKSNYDDSLSEPEIMPSSFPFLLVNGSSGIAVGMATNMA 185 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNLRE+ A + ++D ++ LL IV+GPD+PT EI+ + I K Y+ G+GSV + Sbjct: 186 PHNLREICDAIVYMLDNENASIFDLLKIVKGPDFPTFGEIVYNDNLI-KAYKTGKGSVVI 244 Query: 242 RAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 RA + E+ A++++ +P+ V+ + +L ++A + +KL + D+RDESD E Sbjct: 245 RARYHIEERAEDRNAIIVTEIPYTVNKSALLMKVALLAKEEKLEGLLDIRDESDREGIRI 304 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 ++ V R D +MN L+ T+ +K + IN N+ ++G P NL E+L E++ R++ Sbjct: 305 VLEVKR--GFDPHVIMNLLYEYTEFKKHFSIN-NLALVNGIPKQLNLEELLFEFIEHRKN 361 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQ 413 + RR+ + L K ++ H+LEGL +A NIDEVI+II++ + + L+S FGL+E Q Sbjct: 362 IIERRIEFDLRKAKEKAHVLEGLNIALNNIDEVIKIIKSSKLAKDARERLVSNFGLSEIQ 421 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 A ++L+++L+ L LE K+ E + L + IL + ++ N++++E +G Sbjct: 422 ANSVLDMRLQKLTALEIFKLEEELNILLSLIKDYEDILLNPVRIINIIREETINLGLKFG 481 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK------- 526 D+RR+ + EE S D++ E + ++L++ G+++ ++ G K Sbjct: 482 DERRTKIIYDEEVLKTSMSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDL 541 Query: 527 -AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVD 583 GD A+ ++ + + + G+ Y I+ + + +G+ ++ + L + Sbjct: 542 NDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKGQNISELINLGDQEEIL 601 Query: 584 HMLM---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDAS 640 + +DD LL+ + +G D A G +I L + V ++ Sbjct: 602 TIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFK-D 660 Query: 641 DMLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVLPPQSTLT 699 + ++ +++ G +F D+ ++G +G + + + + + L Sbjct: 661 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVK------VLSVKENPYLL 714 Query: 700 IHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 I K +RG G + + A S D E Sbjct: 715 IVSENGYGKRLNMSKISEL-KRGATGYTSYK-KSDKKAGSVVDAIAVSEDDE 764 Score = 71.9 bits (175), Expect = 9e-11, Method: Composition-based stats. Identities = 27/219 (12%), Positives = 75/219 (34%), Gaps = 13/219 (5%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKA 533 L ++EE + L + ++ + G + + D + D + Sbjct: 594 LGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTS 653 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQK 593 A ++ V+ + G ++ + + +G + L G +L ++ Sbjct: 654 AEIVFKDEKVICLSKKGSAFIFNSRDV-RLTNRGTQGVCGMKLKEGDLFVKVLSVKENPY 712 Query: 594 LLMASDAGYGFVCTFNDLVARNRAGKALITLPENAH----VMPPVVIEDASDMLLAITQA 649 LL+ S+ GYG + + R + ++ V+ + + D +L +++ Sbjct: 713 LLIVSENGYGKRLNMSKISELKRGATGYTSYKKSDKKAGSVVDAIAV-SEDDEILLVSKR 771 Query: 650 GRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLA 687 + L + + K +G +++ + + + Sbjct: 772 SKALRTVAGKVSEQGKDARGIQVLFLDNDSLVSVSKFIK 810 >UniRef50_Q9HJB6 DNA gyrase, subunit A (GyrA) related protein n=5 Tax=Thermoplasmatales RepID=Q9HJB6_THEAC Length = 796 Score = 722 bits (1865), Expect = 0.0, Method: Composition-based stats. Identities = 235/762 (30%), Positives = 403/762 (52%), Gaps = 32/762 (4%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 E+ A+ +YL Y+M VI+ RA+P + DGLKPVQRR++Y+M ELG+ +KK AR Sbjct: 5 EKRAVEVEIRKSYLEYAMSVIVSRAIPDVRDGLKPVQRRVLYSMRELGVTHDKPYKKCAR 64 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 VG+ +GKYHPHGD A Y+A+V MAQ FS RYPLVDGQGN+G+ D S AAMRYTE+RL Sbjct: 65 IVGETMGKYHPHGDMAIYDALVRMAQDFSLRYPLVDGQGNFGSIDG-DSPAAMRYTEARL 123 Query: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 ++ +E ++ ++ + T + NFDGTL EP+ LP+++PN+L+NG++GIAVGMAT++ PHNL Sbjct: 124 TQIAEDMMDDIDENTVPFRLNFDGTLSEPEYLPSKIPNLLINGSSGIAVGMATNMVPHNL 183 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245 E+ A + +D + +D LL V+GPD+P + + I + Y GRG V ++ Sbjct: 184 TEICDAILYEVDHRDSPVDDLLKYVKGPDFPGGGIVFYGKDLI-EAYRTGRGKVIVQGEV 242 Query: 246 K-KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 ED ++I ++P+ V+ A +++ IA +N+ + + D++DESD R+VI R + Sbjct: 243 DATEDRRLIIKSIPYGVNKADLVQSIADLAKNEVIKDITDIKDESDRNG-IRIVIKVRDD 301 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 364 + V+N L+ T LE S I +N++ + +P + NL +++ ++ R D + RR + Sbjct: 302 DIKP-LVLNQLYEHTALESSIGI-INLVLVGNQPKLMNLKDLIDSFIDHRLDVILRRSQF 359 Query: 365 RLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKP---ALMSRFGLTETQAEAILELK 421 RL++ +RL +L G+L A +ID V+EI+++ + L + F L + Q +AILE++ Sbjct: 360 RLDRKKERLDVLTGILTAVEHIDRVVEILKSSKDADEASSKLRNEFDLNDRQIKAILEMR 419 Query: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQ 481 L+ L E+ +R E ++++ E L+ I+ SE + + KKE+ + YGD RRS ++ Sbjct: 420 LQRLVNTEQESVRSEIAQIQAEIKDLEEIILSEDRRIDEFKKEITEIQKKYGDKRRSRIK 479 Query: 482 EREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP-------GLNYKAGDSFKAA 534 R + D++P+E I+LS G V+ + + + + K DS K+ Sbjct: 480 FRGI-TERTMEDLIPNEESLIMLSYGGLVKRVQADEYRSQRRGGKGVNTSMKTSDSIKSM 538 Query: 535 VKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGATVDHMLMESDDQ 592 + S+ V + +TGR + +P S G L L G V ++ ++ Sbjct: 539 IHCFSHDTVYYFTNTGRVFKSKAYEIPKKSRTSLGVSAAAFLKLAQGERVTEIMKAPPEK 598 Query: 593 --KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAG 650 L++ + G + + +G +ITL ++ ++ + ++ G Sbjct: 599 GYYLILVTRDGSVKKTAADPVFDSKSSGLKIITLEDDDELVSVS-YTAGDKNMFVLSSKG 657 Query: 651 RMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKL 709 + +F S++ + + G + + + D + +V+ + K K Sbjct: 658 KASVFNTSEIRETGRTSMGVRSMRLNEG------DTILTAFVVNSDEDILSISEKGYGKR 711 Query: 710 RPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 + RG G ++ + +R S + E Sbjct: 712 TNISEFPIH-HRGSSGVMV--YRDTERTGRVSHAIPVRDEDE 750 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 71/216 (32%), Gaps = 14/216 (6%) Query: 483 REEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHD-IDAPGLNYK-----AGDSFKAAVK 536 + E I++++ G V+ D+ K D + Sbjct: 584 QGERVTEIMKAPPEKGYYLILVTRDGSVKKTAADPVFDSKSSGLKIITLEDDDELVSVSY 643 Query: 537 GKSNQPVVFVDSTGRSYAIDPITLPS--ARGQGEPLTGKLTLPPGATVDHMLMESDDQKL 594 ++ + + S G++ + + G + L G T+ + + D+ + Sbjct: 644 TAGDKNMFVLSSKGKASVFNTSEIRETGRTSMG---VRSMRLNEGDTILTAFVVNSDEDI 700 Query: 595 LMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIED--ASDMLLAITQAGRM 652 L S+ GYG ++ +R ++ + D ++ ++ + Sbjct: 701 LSISEKGYGKRTNISEFPIHHRGSSGVMVYRDTERTGRVSHAIPVRDEDEVILVSMNEKT 760 Query: 653 LMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLA 687 + S++P+ S+ G K+++I + + Sbjct: 761 IRIKASEIPETSRVTSGVKLMDIDGDDRVIAAAVIK 796 >UniRef50_Q1D9G9 Type II DNA topoisomerase, A subunit n=3 Tax=Myxococcales RepID=Q1D9G9_MYXXD Length = 813 Score = 720 bits (1859), Expect = 0.0, Method: Composition-based stats. Identities = 264/766 (34%), Positives = 411/766 (53%), Gaps = 34/766 (4%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMS-ELGLNASAKFKKSARTV 67 +L + Y+NY++ VI RALP + DGLKPVQRRI++ M + L AK++KSA+ V Sbjct: 59 SLADEARRRYINYALSVITSRALPDVRDGLKPVQRRILFGMFHDHRLTHEAKYQKSAKVV 118 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 G V+G+YHPHGD++ YEA+V MAQ FS RYPLVDG GN+G+ D AAMRYTE RL+ Sbjct: 119 GSVMGQYHPHGDASIYEALVRMAQDFSLRYPLVDGHGNFGSLDG-DGAAAMRYTECRLAM 177 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 S LL+ELG+ T + P +DGTLQEP ++PAR+P +L+NGTTGIAVGMAT+IPPH+L E Sbjct: 178 LSSELLTELGKKTVAFRPTYDGTLQEPVVIPARVPQLLMNGTTGIAVGMATNIPPHHLGE 237 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK 247 + A +ALI+ P+ LL V+GPD+PT +I+ + E+R IYE+G+GS+R+R +K Sbjct: 238 LVDALVALIENPQLLTKDLLKWVKGPDFPTGGQILNDKKELRDIYESGQGSIRIRGEYKL 297 Query: 248 ED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 ED +VI+++P+ V+ + ++ + +R +KLP++ D+RDES + R+V+ + Sbjct: 298 EDLKRGGQQIVITSIPYTVNKSTLVAKFGDLVRERKLPLITDVRDESTKD--VRIVLELK 355 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMI--GLDG----RPAVKNLLEILSEWLVFRRD 356 + + + VM +L+ T L+ ++ +NL + D P NL +IL +L FR D Sbjct: 356 KD-ANPELVMAYLYKQTPLQTNFGVNLTCLVPIKDKPELSTPERLNLRDILWYFLTFRFD 414 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQ 413 V +R + L ++L+R+HILEG + +DE+I+IIR + + L++RF L E Q Sbjct: 415 VVTKRFEHELGELLRRVHILEGFEKVYDALDEMIKIIRASEGKQDAARKLIARFKLDEAQ 474 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 +AILE+KL LA+LE + + E E E ++QGIL + K+ ++ EL Y Sbjct: 475 VDAILEMKLYKLARLEILVVEKELKEKRAEIKRIQGILKDKNKVWGTVRDELGEMKARYN 534 Query: 474 DDRRSPLQERE-EAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFK 532 D RR+ + E S + E +V+++ GWV+ D + GD+ Sbjct: 535 DKRRTRIGGAGSEEMEFSAEAFIADEDAHVVITRDGWVKRV-REVKDPSTTRLREGDAVM 593 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESD-- 590 A + G +V + G +Y +P++ G GEP+ G V L Sbjct: 594 AVLAGSLKANLVLFSNFGTAYVTRFNDVPASTGYGEPVQKFFKFDDGERVVSALSLDARL 653 Query: 591 --DQKLLMASDAGYGFVCTFND-LVARNRAGKALITLPENAHVMPPVVIEDASDMLLAIT 647 QKL+ + G G L RAG+ E ++ + D D+L +T Sbjct: 654 PRPQKLVGVTKQGMGMRFLLEPHLEVSTRAGRRYAKTGEGDEIIGVQPVTD-RDLLAVLT 712 Query: 648 QAGRMLMFPVSDLPQL-SKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRK 706 + L+ V+++ +L GKG +I + + ++ + L K + Sbjct: 713 EKTSALVCKVAEVNELAGPGKGVTVIKVDGGDRVVDFLAVSPA---QKDAKLEFETQKGR 769 Query: 707 IKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSEE 752 +VTG RG +G M +R E+ ++ Sbjct: 770 KLHLSPAKYEVTG-RGGKGHEM--SKRDAVKEVARAVTFIPLPEKK 812 >UniRef50_D2QWS9 DNA gyrase, A subunit n=5 Tax=Planctomycetaceae RepID=D2QWS9_9PLAN Length = 938 Score = 717 bits (1852), Expect = 0.0, Method: Composition-based stats. Identities = 250/760 (32%), Positives = 378/760 (49%), Gaps = 63/760 (8%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 + + + +YL Y+M VI+ RALP + DGLKP QRRI+ AM++L L A Sbjct: 22 GTRFLDQPIEDELKESYLTYAMSVIVSRALPDVRDGLKPSQRRILVAMNDLNLTPGAPRV 81 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K A+ GD G YHPHG+S Y +V MAQ ++ R+ L+D QGN+G+ AAMRYT Sbjct: 82 KCAKISGDTSGNYHPHGESVIYPTLVRMAQEWNMRHILIDKQGNFGSIAGLPP-AAMRYT 140 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+RLS + ++L +L T D+VP +D QEP +LP R PN+L+NG GIAVGMAT IP Sbjct: 141 EARLSPVASMMLEDLNLDTVDFVPTYDERNQEPTVLPCRFPNLLVNGAQGIAVGMATSIP 200 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNL EV +A + +ID P+ TL +L +I++GPD+PT I RA IR+ Y +GR ++ + Sbjct: 201 PHNLGEVCEALVKVIDDPEVTLGELCEIIKGPDFPTGGTI-CGRAGIRRGYRDGRSTIVL 259 Query: 242 RAVWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 RA + E+ ++I+ +P+Q + RV+E+IA + +++ + + D SD + P Sbjct: 260 RAKTRIEEHKKDRYRIIITEIPYQQARDRVVEKIAELVNEERIKGISGITDLSDLKEPVH 319 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 LVI + + D V+N L+ + L+ S I + + +DG+P +L E+L E+L R Sbjct: 320 LVIDIKRD-ADPYVVLNQLYQFSPLQDSISI-ILLALVDGKPRELSLKELLEEFLRHRVT 377 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALM--------- 404 +RRR + L K +R H +EGLL+A NIDE+I IIR E K LM Sbjct: 378 VIRRRTQFLLSKARRRKHTVEGLLLALANIDEIIRIIRASRTQAEAKVGLMGVECPAAMM 437 Query: 405 -------------------SRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERD 445 + LT Q+EAIL + L L LE+ ++ GE +EL KE Sbjct: 438 QRALGEEGFAMFQSERGASDTYRLTAVQSEAILRMTLGQLVNLEQERLGGEHAELLKEIA 497 Query: 446 QLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLS 505 + ILA E + ++K+EL A A YGD+RR+ + EE ++ D++ E + + +S Sbjct: 498 EYLRILADENIIRAMIKEELIAIAAKYGDERRTEI-SGEEIGDVNLEDLITEETMVVSIS 556 Query: 506 QMGWVRSAKGHDIDAPGLNYK--------AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDP 557 G+++ A K D ++ ++F + GR Y Sbjct: 557 HRGYIKRTPASTYRAQRRGGKGLKGAKTEDEDPIAHLFVASTHAYLLFFTNLGRVYWQKV 616 Query: 558 ITLPS--ARGQGEPLTGKLTLPPGATVDHMLMESD----DQKLLMASDAGYGFVCTFNDL 611 LP +G + L L G + + D L+MA+ G D Sbjct: 617 YDLPELSRESRGRAIVNLLNLSEGEKIAECIAIRDFDQQGHFLMMATRKGLVKKSPLEDY 676 Query: 612 VARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNK 670 + G I L E+ V+ VV + D ++ T G + F SD + + G K Sbjct: 677 SRPKKGGIIAIKLREDDEVVDVVVTKPG-DEVVLSTSTGMAIRFSESDARPMGRNTSGVK 735 Query: 671 IINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLR 710 I++ S D L + V P +TL K Sbjct: 736 GISLASG------DSLVGMVVADPDATLLTVCENGYGKRT 769 Score = 54.9 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 40/288 (13%), Positives = 82/288 (28%), Gaps = 28/288 (9%) Query: 481 QEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAA 534 + + A+ ++ D ++ ++ G V+ + D + + D Sbjct: 639 EGEKIAECIAIRDFDQQGHFLMMATRKGLVKKSPLEDYSRPKKGGIIAIKLREDDEVVDV 698 Query: 535 VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLMESDDQ 592 V K VV STG + AR G +G ++L G ++ M++ D Sbjct: 699 VVTKPGDEVVLSTSTGMAIRFSESD---ARPMGRNTSGVKGISLASGDSLVGMVVADPDA 755 Query: 593 KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHV-MPPVVIEDASDMLLAITQAGR 651 LL + GYG F A ++ + + A + Sbjct: 756 TLLTVCENGYGKRTNFGP-----NAEVVGPPPADDDSIDTGSIDTSSAEAETVVAEPPAP 810 Query: 652 MLMFPVSDLPQLSKGKGNK-------IINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGK 704 D G++ + + + + + + + + Sbjct: 811 AEEAAAEDEGDEEGSSGSRYRTQRRGGKGLRDIKTTTRNGTVIAVARVDDTEEVLMMTAR 870 Query: 705 RKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSEE 752 K++ K G R +G + L D+ D E Sbjct: 871 GKLQRIAAREIKTIG-RNTQGVRIMSLDDDDK---LVAVVRVPRDEAE 914 Score = 46.4 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 2/79 (2%) Query: 567 GEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRA--GKALITL 624 G+ L T TV + D +++LM + G ++ R G +++L Sbjct: 837 GKGLRDIKTTTRNGTVIAVARVDDTEEVLMMTARGKLQRIAAREIKTIGRNTQGVRIMSL 896 Query: 625 PENAHVMPPVVIEDASDML 643 ++ ++ V + + Sbjct: 897 DDDDKLVAVVRVPRDEAEV 915 >UniRef50_B9ZQ27 DNA gyrase, A subunit n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQ27_9GAMM Length = 823 Score = 715 bits (1847), Expect = 0.0, Method: Composition-based stats. Identities = 240/772 (31%), Positives = 385/772 (49%), Gaps = 38/772 (4%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 S+ L + +++ +Y+M VI DRALP DGLKPV RRI+Y+M +LG+ K Sbjct: 12 SNAPLELEIGNVMRSSFADYAMSVITDRALPDARDGLKPVHRRILYSMHQLGITHMVAHK 71 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VGDVLGKYHPHGDSACY++ V MAQ ++ R+PL+DGQGN+G+ D + AAMRYT Sbjct: 72 KSARVVGDVLGKYHPHGDSACYDSAVRMAQHWAMRHPLIDGQGNFGSIDG-DNAAAMRYT 130 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E RLSK L +++ + T D+ NFDGT +EP++LP PN+L+NG+ GIAVGMAT +P Sbjct: 131 EMRLSKLGTRLFADIQKNTVDFRDNFDGTEREPEVLPLTYPNLLVNGSEGIAVGMATSVP 190 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNLRE A A +A +D P+ T ++ + GPD+PT I+ + + GRG+V++ Sbjct: 191 PHNLRETADAFLAWLDNPEITTREIAQHMPGPDFPTGG-ILHDLDGYIQALDTGRGAVKL 249 Query: 242 RAVWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 R+ W ED +VI +P+ V+ A+++EQIA +R KK+ V DLRDES+ + R Sbjct: 250 RSQWTVEDRPRGGSRLVIDQIPYAVNKAKLVEQIAELVREKKIEGVADLRDESNKKG-IR 308 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 +V+ + + + + L T LE S R N+ M + P + ++ + R + Sbjct: 309 IVLEIKR-EFEAEAIAFQLVTMTQLETSVRYNI-MALVGQTPMQLGVRDLFEHFRAHRIE 366 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQ 413 ++RR + L++ L RLHILEGLL+A +DE I IR + A L+ G+ TQ Sbjct: 367 VIQRRTQFDLDRALDRLHILEGLLMALDRLDETIATIRASADADEARGGLIDLLGIDVTQ 426 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 A+AIL++KL+ L L+ IR E L E L+ ILA + +++ EL + Sbjct: 427 AQAILDMKLQKLTGLQIQDIRDEHDRLTAEVADLRDILARSERQVEIMRTELLDLCDQHA 486 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK------- 526 ++R + + +S D++P E V ++ +Q G+++ D++ K Sbjct: 487 NERCTEIDTS--LSKVSAADLIPEEDVMLIGTQQGYLKRIAAKDMNRQNRGTKGRSIMSV 544 Query: 527 -AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVD 583 D G S+ ++ + +G+ +AI +P +G G V Sbjct: 545 GEDDLVTTFHAGHSHDTLIALTDSGQVHAIKAYDIPDTGLGNKGRHYRNVFEGVEG-NVV 603 Query: 584 HMLMESD----DQKLLMASDAGYGFVCTFNDLVA-RNRAGKALITLPENAHVMPPVVIED 638 ML L++ + G + R G I+L E ++ V +D Sbjct: 604 AMLTVDGLESVTHSLVIFTAQGLVKRTPLSAYSNATRRGGIQGISLVEGDSIVCARVSKD 663 Query: 639 A-SDMLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVLPPQS 696 ++ ++ + + F + + + + +G + +N+ D + + ++ Sbjct: 664 EPNESVIVAADNAKAIRFGMEEARAIGRTSRGVRAMNLSEDARVVAGDIIHADDL--EKA 721 Query: 697 TLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSG 748 L + K K P ++ RG +G R Sbjct: 722 HLMVVSEKGLGKATPASEFRLQ-SRGGKGVT--SYTPNKRSGPVVAATVLFE 770 Score = 58.8 bits (141), Expect = 8e-07, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 68/192 (35%), Gaps = 23/192 (11%) Query: 501 TIVLSQMGWVRSAKGHDI-------DAPGLNYKAGDSFKAAVKGKS--NQPVVFVDSTGR 551 ++ + G V+ G++ GDS A K N+ V+ + Sbjct: 618 LVIFTAQGLVKRTPLSAYSNATRRGGIQGISLVEGDSIVCARVSKDEPNESVIVAADNAK 677 Query: 552 SYAIDPITLPSARGQGEPLTGK--LTLPPGATVDH--MLMESD--DQKLLMASDAGYGFV 605 + + AR G G + L A V ++ D L++ S+ G G Sbjct: 678 AIRF---GMEEARAIGRTSRGVRAMNLSEDARVVAGDIIHADDLEKAHLMVVSEKGLGKA 734 Query: 606 CTFNDLVARNRAGKALITLPENAH---VMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQ 662 ++ ++R GK + + N V+ V+ + +D ++ G SD+P Sbjct: 735 TPASEFRLQSRGGKGVTSYTPNKRSGPVVAATVLFEGAD-VVLFNDQGGANRIAGSDVPH 793 Query: 663 LSKG-KGNKIIN 673 + G+ II Sbjct: 794 NGRATTGSAIIR 805 >UniRef50_B7KIH9 DNA topoisomerase (ATP-hydrolyzing) n=6 Tax=Cyanobacteria RepID=B7KIH9_CYAP7 Length = 848 Score = 715 bits (1846), Expect = 0.0, Method: Composition-based stats. Identities = 237/809 (29%), Positives = 395/809 (48%), Gaps = 74/809 (9%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 + ALH+ E +YL Y+M VI+ RALP + DG+KPV RRIVYAM ELGL A ++ Sbjct: 10 TGQIIPTALHQEMERSYLEYAMSVIVGRALPDVRDGMKPVHRRIVYAMHELGLTADRPYR 69 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K AR VGDVLGKYHPHGD A Y+A+V M Q FS RYPL+ G GN+G+ D AAMRYT Sbjct: 70 KCARVVGDVLGKYHPHGDQAVYDALVRMVQEFSSRYPLLAGHGNFGSVD-NDPPAAMRYT 128 Query: 122 ESRLSKYSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 E+RL+ + +L + + D+ NFD + QEP +LPA+LP +LLNG +GIAVGMAT+I Sbjct: 129 ETRLAPIGQEAVLGNISEAIVDFTNNFDNSQQEPVVLPAQLPILLLNGCSGIAVGMATNI 188 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL E+ IALID+P+ +QL +I+ GPD+PT +II I++ Y G+G + Sbjct: 189 PPHNLGEIVDGLIALIDRPQLKDEQLWEIIPGPDFPTGGKII-DTEGIKEAYRTGKGIIP 247 Query: 241 MRAVWKKE-----------DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDES 289 ++ V E A+V++ LP+QV+ + +E++A + +L + D+RDES Sbjct: 248 VQGVTHVETISLEGRRPKERTAIVVTELPYQVNKSGWIEKVADLVNQGRLEGIADIRDES 307 Query: 290 DHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSE 349 D + ++ + R +V+ L+ T L+ ++ + + + +D +P +L E+L E Sbjct: 308 DRQGMRVVIELKRE--FKTKKVLEDLYKQTALQSNFGV-ILLALVDNKPCQLSLRELLEE 364 Query: 350 WLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSR 406 +L FR T+ R+ + L + RLH+LEGLL+A N+D+VI I+RN + K Sbjct: 365 FLNFREQTLTRQYRHELTQAQTRLHLLEGLLIALRNLDQVINILRNAPDGTTAKQKFQEE 424 Query: 407 FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ 466 ++E QA++IL + +R L LE+ K++ E +L++ +QLQ +L ++ LKK+L+ Sbjct: 425 LTISEEQADSILAMPMRRLTGLEQQKLQTEYEDLQQRINQLQVLLNDRIELMKSLKKDLR 484 Query: 467 ADAQAYGDDRRSPLQEREEAKAMSEH---------------------------------- 492 A + +GD+RR+ + + SE Sbjct: 485 ALKRKFGDERRTRIVSSAPTASKSEEKKGNPSTPPQPSKTTTPSKSSEPKAKDSSSLSLF 544 Query: 493 -DMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGR 551 P + + +++ G++ + ++ K D + + ++ + G+ Sbjct: 545 TPQPPPKDAVLTITEQGYIYWQSAAEFNSISSIKKGTDFPIYTQRIQQQDSLIVITDQGK 604 Query: 552 SYAIDPITLPSARGQGEPLTGKLT---LPPGATVDHMLMESDDQKL---LMASDAGYGFV 605 +Y + +P Q L L + + + L ++ + G Sbjct: 605 AYPVSGSEIPPQESQPCSLLNLLPNSVQKNSQKIASYFLFPQQKNLSELILLTGQGRIKR 664 Query: 606 CTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPV--SDLPQL 663 + ++L G +LI L ++ + + + S + T GR+L +P + Sbjct: 665 LSMSELEQIGNRGLSLIKLKDDDRL-GYLSLTSESHEVAIATNGGRVLRLTTRDEQIPLM 723 Query: 664 SK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERG 722 + +GN+ + + E + L + K P ++T G Sbjct: 724 GRNAQGNQALRLRYGEN------IVGCVTPKIDDNLLLITQSGYGKRIPVNSLRITKL-G 776 Query: 723 RRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 GT+ + + + + E Sbjct: 777 EIGTMALQFS--SKTDNLAGMILAKPKKE 803 >UniRef50_Q4A7J5 DNA gyrase subunit A n=5 Tax=Mycoplasma hyopneumoniae RepID=Q4A7J5_MYCH7 Length = 853 Score = 715 bits (1845), Expect = 0.0, Method: Composition-based stats. Identities = 239/774 (30%), Positives = 402/774 (51%), Gaps = 40/774 (5%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 ++D + + + + ++L+YSM VI+ RALP + DGLKPV RRI+Y M+ELG+ + + Sbjct: 42 ITDNISPIKIEDEMKASFLDYSMSVIVSRALPDVRDGLKPVHRRILYTMAELGITSGTSY 101 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VGDVLGKYHPHGD++ YE+MV MAQPFS RYPLVDG GN+G+ D AAMRY Sbjct: 102 KKSARIVGDVLGKYHPHGDASVYESMVRMAQPFSLRYPLVDGHGNFGSIDG-DEAAAMRY 160 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RLSK S ++ L + T D+ PN+D + EP++LPA+ PN+L++G +GIAVGM T I Sbjct: 161 TEARLSKISNKMIEGLKKNTVDFRPNYDASEVEPEVLPAKFPNLLVSGVSGIAVGMMTKI 220 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL E+ + I PK +++L+ + GPD+PT A I + I + Y G+GS Sbjct: 221 PPHNLGEIIHSFIIFAKNPKIEINELISSLPGPDFPTGATI-YGKKGINQAYLTGKGSFI 279 Query: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 +RA K E+ ++ +P++V ++E++A +RNKK+ + D+RDES Sbjct: 280 IRAKAKIENLNSGRSRIIFYEIPYEVKKPAIIEKVAFLVRNKKILGIKDVRDESSRHGIR 339 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 + + + + ++N L+ +TDL+ +Y IN+ + ++G P + NL +I + +L ++ Sbjct: 340 VVFEIKK--GFSPEIILNKLYHSTDLQINYSINM-LALVNGVPKLMNLAQIFNYYLEHQK 396 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTET 412 + R LN+ LEK ++L++LEG+ VA NIDEVI+II++ + L + L Sbjct: 397 EINLRSLNFDLEKATEKLNVLEGIKVAVENIDEVIKIIKSSKSDQAAQEKLAHTYNLNPG 456 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 Q +AI+E++L L L K+ E EL+ E +++ I+ S +K+ +L+ ++ + + Sbjct: 457 QTKAIIEMRLGRLTSLAIEKLNNEIEELKVEISEIKSIIDSPKKLIDLIIEQHKNVVAQF 516 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGL--------N 524 GD RRS + E + E D++ E V I L+Q +V+ + N Sbjct: 517 GDPRRSEII--PEIDCLDEEDLIADEQVIISLTQNNYVKKMALDEYRLQNRGGIGTLASN 574 Query: 525 YKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATV 582 + D K+ + ++ + S+ + + + +P G+G P+ + L ++ Sbjct: 575 HYKDDELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGKGIPILNLIKLEKNESI 634 Query: 583 DHMLM---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDA 639 +++ E D+ L+ S G + + GK + L EN +++ + + Sbjct: 635 SNLIPWNQEYDNHWLITVSAFGNIKKTALSAFRNITKNGKIALKLAENDYLVSAFIAPNN 694 Query: 640 SD-MLLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQST 697 D +L + G + + + L + G K I + G + Sbjct: 695 PDLNILIGSSQGFVNRWSIKLLRDSGRTAIGVKGIKLEEGHKIIGACFAFD------NNF 748 Query: 698 LTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 + K K ++TG R +G + + A + E Sbjct: 749 IFSLSKKGFGKKTQVGEYRLTG-RTTKGLM---SLDAKKAGNLVFISAIKNNQE 798 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 73/231 (31%), Gaps = 17/231 (7%) Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK------AGDSFK 532 L++ E + + I +S G ++ N K D Sbjct: 627 KLEKNESISNLIPWNQEYDNHWLITVSAFGNIKKTALSAFRNITKNGKIALKLAENDYLV 686 Query: 533 AAVKGKSNQPV--VFVDSTGRS--YAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLME 588 +A +N + + S G ++I + G + L G + Sbjct: 687 SAFIAPNNPDLNILIGSSQGFVNRWSIKLLRDSGRTAIG---VKGIKLEEGHKIIGACFA 743 Query: 589 SDDQKLLMASDAGYGFVCTFNDL--VARNRAGKALITLPENAHVMPPVVIEDASDMLLAI 646 D+ + S G+G + R G + + +++ I++ + ++ Sbjct: 744 FDNNFIFSLSKKGFGKKTQVGEYRLTGRTTKGLMSLDAKKAGNLVFISAIKNNQEAIIT- 802 Query: 647 TQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQS 696 T+ G + + +P +S+ KG KII + + +++ Sbjct: 803 TKKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSLISKNETEKQNE 853 Score = 51.1 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 36/286 (12%), Positives = 81/286 (28%), Gaps = 36/286 (12%) Query: 377 EGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGE 436 E + N + II + + + Q + + + +L KLE+ + Sbjct: 580 ELKSLCITNTLSDLLIISSSAKIFKLRAHQIPDGSKQGK---GIPILNLIKLEKNE---- 632 Query: 437 QSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLP 496 L + + R+ + + A ++E+D L Sbjct: 633 ------SISNLIPWNQEYDNHWLITVSAFGNIKKTALSAFRNITKNGKIALKLAENDYLV 686 Query: 497 SEPV--------TIVLSQMGWVRSAK--------GHDIDAPGLNYKAGDSFKAAVKGKSN 540 S + ++ S G+V I G+ + G A N Sbjct: 687 SAFIAPNNPDLNILIGSSQGFVNRWSIKLLRDSGRTAIGVKGIKLEEGHKIIGACFAFDN 746 Query: 541 QPVVFVDSTGRSYAIDP--ITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMAS 598 + + G L +G L + + ++Q+ ++ + Sbjct: 747 NFIFSLSKKGFGKKTQVGEYRLTGRTTKG---LMSLDAKKAGNLVFISAIKNNQEAIITT 803 Query: 599 DAGYGFVCTFN--DLVARNRAGKALITLPENAHVMPPVVIEDASDM 642 G+ + +++R G +ITL + + +I Sbjct: 804 KKGFAIRIDLDMVPIISRKTKGVKIITLKKGDEITAVSLISKNETE 849 >UniRef50_Q2GCH4 DNA gyrase, A subunit n=2 Tax=Neorickettsia RepID=Q2GCH4_NEOSM Length = 869 Score = 714 bits (1844), Expect = 0.0, Method: Composition-based stats. Identities = 236/805 (29%), Positives = 396/805 (49%), Gaps = 76/805 (9%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + L + +++YL+Y+M VI++RA+P + DGLKPV RRI+Y+M+EL + ++KS Sbjct: 3 TIIPVNLEQELKSSYLSYAMSVIINRAIPDVRDGLKPVHRRILYSMNELSFYWNKPYRKS 62 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR +G+V+GKYHPHGDSA Y+A+V MAQ FS PL+DGQGN+G+ D AAMRYTE Sbjct: 63 ARVIGEVIGKYHPHGDSAIYDALVRMAQNFSLLVPLIDGQGNFGSIDG-DPAAAMRYTEV 121 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 RL S+ LL +L + + D+ N+D + EP +LPA+ PNIL+NGT G+AVGMAT++P H Sbjct: 122 RLEYISKFLLDDLYENSVDFRSNYDNSETEPVVLPAKFPNILVNGTAGVAVGMATNVPTH 181 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL EV +A ++ T D+LL +++GPD+PT II I+ +E+GRGS+ +R+ Sbjct: 182 NLSEVIEACKLYLENNNVTTDELLKVIKGPDFPTGGLII-GEEGIKASFESGRGSIIIRS 240 Query: 244 VWKKED----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 E+ A+++ LP+QV+ A+++E IA ++ K+L + DLRDES+ E ++ Sbjct: 241 KTHFEETEAGKAIIVDELPYQVNKAKLIENIALLVKEKRLDSISDLRDESNKEGIRVVIE 300 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 + R + V+N LF T L+ SY N+ ++ + RP + +L +IL+ ++ R++ + Sbjct: 301 LKR--GASFEVVLNQLFQMTQLQTSYSTNM-VLLDNMRPTLMSLRDILAAFIAHRKEVIS 357 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----------------- 402 RR +RL K ++ ++L L VA LNIDEV+ I+++ + + A Sbjct: 358 RRTEFRLAKAREKANVLVALYVAILNIDEVVHILKSSGDNEAAIKALSAKHWAIDEELEL 417 Query: 403 ----------LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILA 452 L + L+ Q++AILE+K++ + E+ ++ E + IL Sbjct: 418 LVETISNIKLLNREYKLSTAQSKAILEMKMQRITNTEKGQLVAEIHAEMDIVKECASILG 477 Query: 453 SERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS 512 SE + N++ +EL Y R+S + + A +E D++ E V + + G+++ Sbjct: 478 SEAVLTNVIVRELNEIKAKYPQARKSIILKNVNAV-YAEEDLIEREQVVVTATYSGYIKR 536 Query: 513 AKGHDIDAPGL--------NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--S 562 + N K+ D ++ ++F S G+ Y + LP Sbjct: 537 VHISNYRVQRRGGKGRIAQNIKSEDQLAQIFVLSTHDEILFFSSRGKVYKLKAYKLPIGE 596 Query: 563 ARGQGEPLTGKLTLPPGATVDHMLMES--DDQKLLMASDAGYGFVCTFNDLVARNRAGKA 620 + +G L L ++ +L D + L+ + G + +D GK Sbjct: 597 PQSRGRALVNIFDLADDESITSILPLKSSDAENLIFLTAQGKVKRNSMSDFAYVPANGKV 656 Query: 621 LITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQL-SKGK-GNKIINIPSAE 678 I L +N ++ D + T+ G+ + F V DL L S+ G K I + + Sbjct: 657 AIRLNDNDALISV-KTAQNEDCVFISTRDGKCIRFLVGDLRVLKSRSSEGVKAITLGKDD 715 Query: 679 AARGEDGLAQLYVLPPQ---------------------STLTIHVGKRKIKLRPEELQKV 717 A L + + P + K+ ++ Sbjct: 716 NAISLSILNKQVLSPEDKAEYMKTKFFERIQNPENHEEQFVLTVTENGYGKITSSYEYRI 775 Query: 718 TGERGRRGTLMRGLQRIDRVEIDSP 742 T R G + + +R Sbjct: 776 T---NRGGVGIINISTSERNGKVVS 797 Score = 80.0 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 31/252 (12%), Positives = 81/252 (32%), Gaps = 38/252 (15%) Query: 483 REEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVK 536 +E+ I L+ G V+ D + D+ + Sbjct: 612 DDESITSILPLKSSDAENLIFLTAQGKVKRNSMSDFAYVPANGKVAIRLNDNDALISVKT 671 Query: 537 GKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES------- 589 ++ V G+ L + + +TL + + + Sbjct: 672 AQNEDCVFISTRDGKCIRFLVGDLRVLKSRSSEGVKAITLGKDDNAISLSILNKQVLSPE 731 Query: 590 --------------------DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL---PE 626 ++Q +L ++ GYG + + + NR G +I + Sbjct: 732 DKAEYMKTKFFERIQNPENHEEQFVLTVTENGYGKITSSYEYRITNRGGVGIINISTSER 791 Query: 627 NAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDG 685 N V+ + ++ ++ +T G+++ +++P L + +G ++ +I + E Sbjct: 792 NGKVVSSFKVTLSN-HIMLVTNRGQVIRIEANNIPVLGRNTQGVRLFSIRAEERVASVTE 850 Query: 686 LAQLYVLPPQST 697 + ++ ++T Sbjct: 851 VEEVEDDDSETT 862 Score = 43.4 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 11/123 (8%), Positives = 37/123 (30%), Gaps = 16/123 (13%) Query: 477 RSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNY---------KA 527 ++ ER + E + +++ G+ + ++ + Sbjct: 738 KTKFFERIQNPEN------HEEQFVLTVTENGYGKITSSYEYRITNRGGVGIINISTSER 791 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLM 587 ++ K + ++ V + G+ I+ +P G+ ++ V + Sbjct: 792 NGKVVSSFKVTLSNHIMLVTNRGQVIRIEANNIP-VLGRNTQGVRLFSIRAEERVASVTE 850 Query: 588 ESD 590 + Sbjct: 851 VEE 853 >UniRef50_C6XHT3 DNA topoisomerase IV subunit A n=27 Tax=Alphaproteobacteria RepID=C6XHT3_LIBAP Length = 753 Score = 713 bits (1841), Expect = 0.0, Method: Composition-based stats. Identities = 267/748 (35%), Positives = 442/748 (59%), Gaps = 25/748 (3%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + + ++L E YL Y++ I +RA+P + DG KPV RRI++AMSE+GL+ A FKK Sbjct: 15 ENVKAVSLRFALEERYLAYALSTIKERAIPDLRDGFKPVHRRIIHAMSEMGLDFGAAFKK 74 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SAR VG+V+GK HPHGD + Y+++V +AQPF RYPL+ GQGN+G D S AA RYTE Sbjct: 75 SARIVGEVIGKLHPHGDQSVYDSLVRLAQPFVQRYPLISGQGNFGNIDG-DSAAAYRYTE 133 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +R+++ +EL+L + + D+ ++ EP + P++ PN+L NGT+GIAVGMAT IP Sbjct: 134 ARMTQVAELILQGVDEDAVDFRDTYNEEDSEPVVFPSKFPNLLANGTSGIAVGMATSIPS 193 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HN++E+ +AA+ALID P+ ++++LL+ + GPD+PT I+ SR I + Y GRG R+R Sbjct: 194 HNVQEICEAALALIDNPEISIEKLLEYIIGPDFPTGGIIVESRESIVESYRLGRGGFRVR 253 Query: 243 AVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 A W E+ +V++ +P+QV +R++E+IA + K++P+++D+RDES + R+ Sbjct: 254 ARWCVEEVGRGSWCIVVTEIPYQVQKSRLIEKIAELIIAKRIPLLEDIRDESAED--VRI 311 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 V+ P++ +D D +M +F +D+E + +N+N++ + P V L IL EWL RR+ Sbjct: 312 VLFPKNRSLDPDLLMESIFMLSDMETRFPLNMNVLSMGRVPQVMPLDGILKEWLAHRREV 371 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAI 417 + RR ++R++ + +R+ IL+GLL+A+LNIDE+I IIRNED+PKP ++SRF LTE Q +AI Sbjct: 372 LFRRSSFRMQAIDRRVEILKGLLIAYLNIDEIIAIIRNEDKPKPVMVSRFSLTENQVDAI 431 Query: 418 LELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD--- 474 L L+LR L KLEE +I+ E L E++++ +L S ++ N + E++ + + Sbjct: 432 LNLRLRSLRKLEEYQIKSELDNLLAEKEKIDSLLNSGKQQWNQIACEIREVKEIFSKSTD 491 Query: 475 --DRRSPLQEREEAKAMS-EHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSF 531 RR+ E A + + M+ EP+T+V+S GW+RS K H +D L++K GDS Sbjct: 492 LGRRRTTFCEVSRADKATLQQAMIEKEPITVVISNRGWIRSLKSHSVDLSALHFKEGDSL 551 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDD 591 K A+ + ++ + + G++Y + L S RG GE + + L + + Sbjct: 552 KIALHAHTTDRILLLSTDGKAYTLPAGNLLSGRGHGEAIQLLIDLNHNQDIVTAFVYDST 611 Query: 592 QKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGR 651 KLL+ S G F+ ++++A R GK + + + V + D + + + + Sbjct: 612 CKLLVVSSKGNAFIVEESEIIANTRKGKTFLKVSSEEKMKLVVKVTG--DHVAVVGENRK 669 Query: 652 MLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH-VGKRKIKLR 710 +L+F + +P++S+GKG ++ + G++ + LT R Sbjct: 670 LLIFSIDQIPEMSRGKGVRLQSYKDG-------GISDVICFKICEGLTWIDSAGRSYNRS 722 Query: 711 PEELQKVTGERGRRG-TLMRGLQRIDRV 737 +L G+RG G + +G R + Sbjct: 723 ENDLLGWLGKRGGVGSLVPKGFPRSGKF 750 >UniRef50_D0SBV6 Type IIA topoisomerase n=3 Tax=Gammaproteobacteria RepID=D0SBV6_ACIJO Length = 993 Score = 712 bits (1839), Expect = 0.0, Method: Composition-based stats. Identities = 249/844 (29%), Positives = 401/844 (47%), Gaps = 112/844 (13%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 +A+ + +N+YL+Y+M VI+ RALP + DGLKPV RR++YAM ELG + + +KKSA Sbjct: 6 IRPIAIEDELKNSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 R VGDV+GKYHPHGDSA YE +V MAQ FS RY LVDGQGN+G+ D S AAMRYTE R Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDG-DSAAAMRYTEVR 124 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 + K + +L++L + T DW N+DG+ + P+++P R+PN+L+NGTTGIAVGMAT++ PHN Sbjct: 125 MRKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGTTGIAVGMATNMAPHN 184 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 + EV A +A + P +++ L++ + GPD+PT II +A I Y G+G + +R Sbjct: 185 MTEVVNACLAYAENPNISIEGLMEYISGPDFPTGG-IIYGKAGIVDAYRTGKGRLHIRGK 243 Query: 245 WKKEDG------AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + E+ +V + +P+QV+ A+ +E+IA ++ KKL + +LRDESD + + Sbjct: 244 YHFEEDQKTGRTTIVFTEIPYQVNKAKTIERIAELVKEKKLEGISELRDESDKDGMRIAI 303 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + R + + V+N+LF T LE S+ IN+ + +G+P + NL +I++ ++ R++ V Sbjct: 304 DLKRGE--NAEVVVNNLFQNTQLENSFSINMVCLD-NGQPKLMNLKDIVAAFIRHRQEVV 360 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKP----------------A 402 RR + L K +R HILEGL VA NID +IE I+ P A Sbjct: 361 TRRTMFELRKARERGHILEGLTVALANIDAIIETIKTSANPAEARERLQAGEWAAGNVIA 420 Query: 403 LMSR--------------------------FGLTETQAEAILELKLRHLAKLEEMKIRGE 436 L+ + + L+ Q AILEL+L L LE+ K++ E Sbjct: 421 LLEKAGSVSVRPDEIEGEDPSRPFGLDGQIYRLSPAQVGAILELRLHRLTGLEQDKLQAE 480 Query: 437 QSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLP 496 +E+ + +L IL + ++K+EL Q YGD RR+ + E S D++P Sbjct: 481 YTEILGQIAELTAILNDFNLLMAVIKEELALILQQYGDARRTAIVES--RIDFSREDLIP 538 Query: 497 SEPVTIVLSQMGWVRSAKGHDI--------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDS 548 E V + +S+ G+ ++ D + K D + + ++ V+ + Sbjct: 539 EEQVVLTVSKTGYAKTQPLSDYAAQRRGGRGKSATSMKEDDYIQHLIVTSNHATVLCFTN 598 Query: 549 TGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVC 606 G+ Y + +P A +G P+ L L T+ +L D K Sbjct: 599 VGKVYRLRVFEVPQASRGSKGRPMVNLLPLDADETITAILPVIDAPK-KFKERLAEFKNF 657 Query: 607 TFNDLVARNRAGKA-----LIT------LPENAHV----------MPPVVIEDASDM--- 642 +++ + + + + + D Sbjct: 658 VRSNVATLRENSIIDAHYDALKASFDELAEDADELSDALRKQLKELGVELSTTDLDNETV 717 Query: 643 ---------------LLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLA 687 + T +G + + + + G + I + ED L Sbjct: 718 VEFADLAEKMRKNFFVFMATASGTVKRVELEQFSNV-RSNGLRAIELKE------EDTLI 770 Query: 688 QLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASS 747 + + + + + + K E +V G + MR + E D S Sbjct: 771 GVAITDGEQQIMLFSNEGKAIRFSETDARVMGRTAKGVRGMRVTLAAAQTEDDVETDTDS 830 Query: 748 GDSE 751 D E Sbjct: 831 DDEE 834 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 54/179 (30%), Gaps = 24/179 (13%) Query: 593 KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRM 652 + MA+ +G G I L E ++ I D ++ + G+ Sbjct: 732 FVFMATASGTVKRVELEQFSNVRSNGLRAIELKEEDTLIGVA-ITDGEQQIMLFSNEGKA 790 Query: 653 LMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDG-------------------LAQLYVL 692 + F +D + + KG + + + A A +D + L V+ Sbjct: 791 IRFSETDARVMGRTAKGVRGMRVTLAAAQTEDDVETDTDSDDEESSDLNVASRIVSLVVV 850 Query: 693 PPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 P + K P + T +RG +G + +R A E Sbjct: 851 PETGEVLCASANGYGKRTPVDDFP-TKKRGGKGVIAIKTS--ERNGELVGAVAIDESKE 906 Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 42/304 (13%), Positives = 99/304 (32%), Gaps = 43/304 (14%) Query: 426 AKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREE 485 E I L+ D+L ++++ L+K+L+ G + + + E Sbjct: 664 TLRENSIIDAHYDALKASFDELAE---DADELSDALRKQLKEL----GVELSTTDLDNET 716 Query: 486 AKAMSEHDMLPSEPV-TIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGK 538 ++ + + + G V+ + + K D+ Sbjct: 717 VVEFADLAEKMRKNFFVFMATASGTVKRVELEQFSNVRSNGLRAIELKEEDTLIGVAITD 776 Query: 539 SNQPVVFVDSTGRSYAIDPIT--LPSARGQGE--------------PLTGKLTLPPGA-- 580 Q ++ + G++ + +G + Sbjct: 777 GEQQIMLFSNEGKAIRFSETDARVMGRTAKGVRGMRVTLAAAQTEDDVETDTDSDDEESS 836 Query: 581 ------TVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE---NAHVM 631 + +++ + ++L AS GYG +D + R GK +I + N ++ Sbjct: 837 DLNVASRIVSLVVVPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELV 896 Query: 632 PPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLY 690 V I D S L+ I+ G ++ S++ + + +G ++I + + E G + + Sbjct: 897 GAVAI-DESKELMLISDGGTLVRTRASEVARTGRNAQGVRLIRLGNEEILVGVVAVEAVE 955 Query: 691 VLPP 694 V Sbjct: 956 VEDD 959 >UniRef50_Q1UZ45 DNA gyrase subunit A n=2 Tax=Candidatus Pelagibacter ubique RepID=Q1UZ45_PELUB Length = 849 Score = 710 bits (1834), Expect = 0.0, Method: Composition-based stats. Identities = 240/802 (29%), Positives = 401/802 (50%), Gaps = 64/802 (7%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 + +++H+ ++YL+Y+M VI+ RALP + DGLKPV RRI++AM + G + S +F+ Sbjct: 9 DKNIKLISMHDEMSSSYLSYAMSVIVSRALPDVRDGLKPVHRRILFAMYKGGYDWSKQFR 68 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VGDV+GKYHPHGD + Y+A+V M Q FS PLV GQGN+G+ D AAMRYT Sbjct: 69 KSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDG-DPAAAMRYT 127 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+RL+K S+ L+ ++ + T ++ N+D T +EP +LPA+ PN+L+NG GIAVGMAT IP Sbjct: 128 ETRLAKVSQYLIDDIEKDTIEYKSNYDETEKEPSVLPAQYPNLLVNGAGGIAVGMATSIP 187 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNL E+ +ALI+ + +L+ + GPD+PT II + I+ Y GRGS ++ Sbjct: 188 PHNLGEIIDGTLALIENKDIKIKELMKHIPGPDFPTGGVII-GKEIIKAGYNVGRGSFKI 246 Query: 242 RAVWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 R E +VI+++P+QV+ + + E+IA +R KK+ + D+RDES+ E Sbjct: 247 RGEISVEAQKNGRERLVITSVPYQVNKSVLNERIAQLVREKKIEGIKDIRDESNREGIRV 306 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 + + N V+ + + L+ T +E S+ N I +DG+P + +L E L+ +L FR D Sbjct: 307 AIDL--RNGVEPETIKRLLYKNTSIESSFGFNTLAI-VDGKPKICDLKEFLTNFLTFRED 363 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSR------- 406 V ++ + L+K R HIL GL V+ N+D++I+IIR+ D+ K +L++ Sbjct: 364 VVIKKTKFDLKKAEDRAHILIGLSVSVENLDKIIKIIRSSKTPDDAKKSLLNTKWKINKS 423 Query: 407 ---------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451 + L++ Q AILEL+L+ L L +I E +L + I+ Sbjct: 424 LKLISLVEDKKEKNLYSLSDPQVIAILELRLQKLTALGINEIEVEIKKLADLIKGYKKII 483 Query: 452 ASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVR 511 S++++ N++ +EL+ + + RR+ + + + + E V I ++ G+++ Sbjct: 484 NSKKELLNVISEELKTIKEKFAVPRRTKIIDAI--LNYDIEETIQKESVIITVTLQGYIK 541 Query: 512 S--------AKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA 563 K G+ + DS + ++ V+F + G Y I +P Sbjct: 542 RGALSSVKQQKRGGKGKSGITTRDEDSVVQTLSVNTHTSVLFFSTEGLVYKIKAWKIPEG 601 Query: 564 --RGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615 +G+ L L L ++ ++ D++ ++ A+ G + D + N Sbjct: 602 STTSKGKSLFNILPLKNHQSISSIMPFPDEESDTKNLQIVFATAKGKVRKNSLEDFSSIN 661 Query: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQ-LSK-GKGNKIIN 673 AGK I L N ++ + +D D ++ T+ G+ + F L + KG K I Sbjct: 662 SAGKIAIKLDPNDKIVGVEICKDDQD-VMLSTKNGKCIRFESKKLRIFKGRSSKGIKGIE 720 Query: 674 IPSAEAARG----EDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTL-M 728 + + + + K +VT RG +G + + Sbjct: 721 LSPNDEIVSLSITNKEKIKKDTKSDGRFVLSITENGYGKKTLNNEYRVT-NRGGKGIIGI 779 Query: 729 RGLQRIDRVEIDSPRRASSGDS 750 R + S GD Sbjct: 780 VNSPRNGSI--CSSFPVIEGDD 799 Score = 89.6 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 76/228 (33%), Gaps = 27/228 (11%) Query: 487 KAMSEHDMLPSEPV------TIVLSQMGWVRSAKGHDIDAPGLNYK------AGDSFKAA 534 +++S P E + + G VR D + K D Sbjct: 620 QSISSIMPFPDEESDTKNLQIVFATAKGKVRKNSLEDFSSINSAGKIAIKLDPNDKIVGV 679 Query: 535 VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES----- 589 K +Q V+ G+ + L +G+ + L P + + + + Sbjct: 680 EICKDDQDVMLSTKNGKCIRFESKKLRIFKGRSSKGIKGIELSPNDEIVSLSITNKEKIK 739 Query: 590 -----DDQKLLMASDAGYGFVCTFNDLVARNRAGKALI---TLPENAHVMPPVVIEDASD 641 D + +L ++ GYG N+ NR GK +I P N + + + D Sbjct: 740 KDTKSDGRFVLSITENGYGKKTLNNEYRVTNRGGKGIIGIVNSPRNGSICSSFPVIEGDD 799 Query: 642 MLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQ 688 ++ T GR++ V ++ + +G +II + E + Sbjct: 800 -VMISTNKGRVIRVAVKEIRTAGRNTQGVRIIKLSGDEKVVSAIKIDD 846 >UniRef50_C7XU56 DNA gyrase, A subunit n=16 Tax=Lactobacillales RepID=C7XU56_9LACO Length = 843 Score = 710 bits (1834), Expect = 0.0, Method: Composition-based stats. Identities = 235/762 (30%), Positives = 387/762 (50%), Gaps = 35/762 (4%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 + E L L + + YS +I +RALP I DGLKPVQRRI++AM++ G F+ Sbjct: 3 DNKIEELTLEQLMGERFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFR 62 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSA++VG+V+G +HPHGDS+ YEA+V ++Q + R PL++ GN G+ D AAMRYT Sbjct: 63 KSAKSVGNVMGNFHPHGDSSIYEALVRLSQDWKLREPLIEMHGNNGSMDG-DPAAAMRYT 121 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+RLSK + L+L ++ + T + NFD T +EP +LPAR+PN+ +NG TGI+ G AT+IP Sbjct: 122 EARLSKIAGLMLRDIDKDTVEMTLNFDDTEKEPTVLPARIPNLFVNGATGISAGYATEIP 181 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNLRE+ QA I L+ P+ LD L+ V GPD+PT II IRK YE GRG V + Sbjct: 182 PHNLRELIQALIYLLKHPEAFLDDLMTYVPGPDFPTGG-IIQGVDGIRKAYETGRGRVIL 240 Query: 242 RAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 RA E+ ++++ +P+ V+ A+++++I NKK+ + + RDE+D Sbjct: 241 RANTTIEELRGGRQQIIVTEIPYGVNKAQLVKRINDLRLNKKVEGISEARDETDRSGLRI 300 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 + + R+ D + ++N+L TDL+ +Y N+ I + RP L L +L F+++ Sbjct: 301 AIELKRN--ADANGILNYLLKNTDLQINYNFNMVAID-NQRPMRVGLKHYLKSYLAFQQE 357 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQ 413 + RR + L K RLHI+EGL+ A +D+VI+ IR N + L++ + T+ Q Sbjct: 358 IITRRTQFNLHKAQTRLHIVEGLIKALSILDQVIKTIRASKNRKDATQNLVNEYQFTQPQ 417 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 AEAI+ L+L L + +R EQ L + IL + ++N +L KE +A + +G Sbjct: 418 AEAIVALQLYRLTNTDVTDLRDEQQRLNDSIAEYNKILNDQNELNRVLVKEFKAIDKQFG 477 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGL---NYKAGDS 530 DR++ +++ + + +P E V +++S G+++ A L + D Sbjct: 478 SDRKTQIEKHIQKLTVDTKVTVPDEEVVVLVSHAGYIKRTSLRSFKASVLEENGLREDDY 537 Query: 531 FKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLME 588 + + + + G L A+ + GE ++ + L + L+ Sbjct: 538 PLLIQRASTLNHLFMFTNQGHVIYRPVHELTDAKWKETGEHISQSIGLADDEEIIKALIF 597 Query: 589 SD---DQKLLMASDAGYGFVCTFNDLVARNR---AGKALITLPENA-HVMPPVVIEDASD 641 + ++ ++ G T DL +R ++ L + + ++ E + Sbjct: 598 ENLELPGTMIFSTSDGQVKQTTIQDLKPGSRYKSRASVVMKLKDASARMINAEYYEPQAQ 657 Query: 642 MLLA--ITQAGRMLMFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTL 698 + I++ G L F V+++P + G + IN+ +D L L L Sbjct: 658 NVSLTAISKHGYGLRFDVAEVPTQGTRTAGVRAINLKD------DDELVNLVQTADDDRL 711 Query: 699 TIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEID 740 I + K +V G R RRG L+ + EI Sbjct: 712 AIMTQRGAFKEMRANELEV-GSRARRGVLVLHKLKKHPHEIV 752 >UniRef50_Q114B8 DNA topoisomerase IV subunit A n=4 Tax=Cyanobacteria RepID=Q114B8_TRIEI Length = 873 Score = 709 bits (1831), Expect = 0.0, Method: Composition-based stats. Identities = 262/822 (31%), Positives = 398/822 (48%), Gaps = 98/822 (11%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 +S +LH + +YL Y+M VI+ RALP + DG KPV RRI+YAM ELGL F Sbjct: 8 LSGKVITTSLHTEMQQSYLEYAMSVIVGRALPDVRDGQKPVHRRIIYAMHELGLTPDRPF 67 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 +K AR VGDVLGKYHPHGD A Y+AMV M Q FS RYPL+DG GN+G+ D AAMRY Sbjct: 68 RKCARVVGDVLGKYHPHGDQAVYDAMVRMIQNFSSRYPLLDGHGNFGSID-NDPAAAMRY 126 Query: 121 TESRLSKYSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 179 TESRL+ LL+++ + D+ NFDG+ QEPK+LPA+LP +LLNG++GIAVGMAT+ Sbjct: 127 TESRLASIGNEGLLTQISEAIVDFTNNFDGSQQEPKVLPAQLPFLLLNGSSGIAVGMATN 186 Query: 180 IPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSV 239 +PPHNL EV IALID P + +L +++ GPD+PT EI+ S I Y GRGS+ Sbjct: 187 VPPHNLGEVVDGLIALIDNPNISDQKLFELIPGPDFPTGGEIV-STDGIIDTYTKGRGSI 245 Query: 240 RMRAVWKKE----------DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDES 289 MR V E A+V++ LP QV+ A +E+ A + K+ + DLRDES Sbjct: 246 PMRGVATIEQVPTGRGRRTKTAIVVTELPFQVNKAGWIEKTADLVNAGKIEGIADLRDES 305 Query: 290 DHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSE 349 D ++ + R D V++HL+ TDL + + + ++G+P +L +L E Sbjct: 306 DRSGIRVVIELKRE--ADPSVVLHHLYRNTDLLSKFGAIM-LALVNGQPQQLSLRTLLQE 362 Query: 350 WLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSR 406 +L FR +T+ R + L+ R HI+ GLL A +D VI+I+RN + K + Sbjct: 363 FLNFREETLTRHYTHELQIAQARSHIVAGLLTALKELDRVIDILRNAPDGNTAKVSFQES 422 Query: 407 FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ 466 GL+E QA+AIL + +R L LE+ K+ E +L + +L+ +L ++ LKKEL+ Sbjct: 423 LGLSENQADAILAMPMRRLTGLEKQKLEEEHEQLMGKIQELENLLGDRHQLLKALKKELR 482 Query: 467 ADAQAYGDDRRSPLQEREEAKAMSEHDML------------------------------- 495 + Y D RR+ + ++ + K + + Sbjct: 483 TLKRKYNDPRRTRIIDQIKLKNADDFASISQQKKYLEAGNKEIDIKTKGRVIKSKNITVK 542 Query: 496 -----------PSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK-------AGDSFKAAVKG 537 P+E V I S G+VR + ++ K + D ++ Sbjct: 543 SPILTLEAAPPPTEKVVIEFSHRGYVRRIPAKGFEKYKIDKKSHITMENSEDFTTNIIEA 602 Query: 538 KSNQPVVFVDSTGRSYAIDPITLPSAR--------GQGEPLTGKLTLPPGATVDHMLME- 588 +++ +V + TG++Y + +PSA +G PL L + E Sbjct: 603 TTDKTLVLLTRTGKAYPLKVNNIPSASNRSTIRNENKGVPLVTLLPPSATKEITDARKEI 662 Query: 589 ----------SDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIED 638 +++ L+M + G +DL G +I L E+ + + + Sbjct: 663 IIGQFILNEAKENKDLIMLTQNGKIKRLCLSDLSDMRNRGVTVIKLKEDDELRYVSLGKT 722 Query: 639 ASDMLLAITQAGRMLMFPVSD--LPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQ 695 ++ T GR+L + D LP + + G++ + ++ L L Sbjct: 723 GEQ-VVLATSGGRLLRLQIDDEKLPLMGRAAQGSQATRLRK------QEELVGCVTLDIG 775 Query: 696 STLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRV 737 S L + K P +V RG G + R D + Sbjct: 776 SNLLLVSQHSYGKQIPVTALRV-ANRGGIGQNVFQFTRQDDI 816 Score = 57.2 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 65/205 (31%), Gaps = 21/205 (10%) Query: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS------AKGHDIDAPGL 523 + D R+ + + E+ L I+L+Q G ++ + + + Sbjct: 653 KEITDARKEIIIGQFILNEAKENKDL------IMLTQNGKIKRLCLSDLSDMRNRGVTVI 706 Query: 524 NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPIT----LPSARGQGEPLTGKLTLPPG 579 K D + GK+ + VV S GR + L QG T L Sbjct: 707 KLKEDDELRYVSLGKTGEQVVLATSGGRLLRLQIDDEKLPLMGRAAQGSQATR---LRKQ 763 Query: 580 ATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGK--ALITLPENAHVMPPVVIE 637 + + LL+ S YG L NR G + ++ +V Sbjct: 764 EELVGCVTLDIGSNLLLVSQHSYGKQIPVTALRVANRGGIGQNVFQFTRQDDILAGIVAS 823 Query: 638 DASDMLLAITQAGRMLMFPVSDLPQ 662 ++ ++ +T GR+ + Sbjct: 824 SSNVLVQVLTTDGRVFGMIADRVKV 848 >UniRef50_A1TLU5 DNA topoisomerase IV subunit A n=22 Tax=Betaproteobacteria RepID=A1TLU5_ACIAC Length = 785 Score = 708 bits (1828), Expect = 0.0, Method: Composition-based stats. Identities = 309/766 (40%), Positives = 441/766 (57%), Gaps = 52/766 (6%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASA---- 58 + + L L + + AYL Y++ V+ RALP + DG+KPVQRRI++AM +GL Sbjct: 15 ESGDHLGLAGYAQRAYLEYALSVVKGRALPDVCDGMKPVQRRILFAMERMGLAYGGPTRN 74 Query: 59 ---KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSF 115 K KSAR VGDVLG++HPHGD + Y+A+V +AQ FS RYPL+DGQGN+G+ D Sbjct: 75 VPAKPVKSARVVGDVLGRFHPHGDQSAYDALVRLAQDFSQRYPLIDGQGNFGSRDG-DGA 133 Query: 116 AAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVG 175 AAMRYTE+RL++ + LLL E+ QGT D+VPN+DG+ +EP+ LPARLP LLNG +GIAVG Sbjct: 134 AAMRYTEARLTRIASLLLDEIDQGTVDFVPNYDGSTEEPRQLPARLPFALLNGASGIAVG 193 Query: 176 MATDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENG 235 +AT+IP HNLRE+A A +AL+ PK ++L +V GPDYP +II+S +I+ Y G Sbjct: 194 LATEIPSHNLREIADACVALVKNPKLADEELAALVPGPDYPGGGQIISSPGDIQDAYRTG 253 Query: 236 RGSVRMRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPM--------- 281 RGS+++RA WK ED +V++ LP VS +VLE+I K Sbjct: 254 RGSLKVRARWKIEDLARGQWQMVVTELPPGVSAQKVLEEIEELTNPKVKAGKKALSQEQT 313 Query: 282 ---------VDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMI 332 +D +RDES + P R+V P++ RV +++ L A T LE S INL M+ Sbjct: 314 QLKATVLGVLDVVRDESSKDAPVRIVFEPKTGRVPQQELITTLLAHTSLETSAPINLTMV 373 Query: 333 GLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEI 392 GLDG+P K+L +L EW+ FR+ T+ RR +RL KVL R+HILEG LNIDEVI I Sbjct: 374 GLDGKPVQKSLRRMLEEWIAFRQQTITRRSQHRLAKVLDRIHILEGRQTVLLNIDEVIAI 433 Query: 393 IRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILA 452 IR DEPK AL+ RF L++ QAE ILE++LR LA+LE +KI E EL +E+ +L+ ILA Sbjct: 434 IRASDEPKAALIERFRLSDRQAEDILEIRLRQLARLEAIKIEQELKELREEQGKLEDILA 493 Query: 453 SERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS 512 + + L+ KE++ADA+ + D RR+ +Q + A A + P V+SQ GWVR+ Sbjct: 494 NPASLRRLMVKEIEADAKQFADARRTLIQADKRATAEVKVVDEPVTV---VVSQKGWVRA 550 Query: 513 AKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTG 572 +GH DA +K+GD+ + ++ ++ S GR Y++ LP ARG G+P+T Sbjct: 551 RQGHGHDAGTFAFKSGDALYGTFECRTVDTLIAFGSNGRVYSVAVSQLPGARGDGQPITT 610 Query: 573 KLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMP 632 + L G H + LL+A GYGF+ + ARNR GKA ++L E + Sbjct: 611 LIDLEAGTQPVHYFAGPANAALLLAGSGGYGFIAAVEHMTARNRGGKAFVSLGEGEQLCR 670 Query: 633 P--VVIEDASD------MLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGE 683 P S + + GR+L F +++L Q++ G+G +I++ + G Sbjct: 671 PSHAAFTSGSQPLAPATHVCCASAGGRILTFEITELKQMANGGRGLMLIDLEPKDTLAGA 730 Query: 684 DGLAQLYVLPPQSTLTIHVGKRKIKLRPEE---LQKVTGERGRRGT 726 + + K + E L RGR+G Sbjct: 731 AAYTRSVRIAG------VGRGGKERDETLEIRSLNNARFPRGRKGK 770 >UniRef50_C1EGN9 Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1EGN9_9CHLO Length = 963 Score = 707 bits (1826), Expect = 0.0, Method: Composition-based stats. Identities = 248/809 (30%), Positives = 382/809 (47%), Gaps = 65/809 (8%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 + L LH +YL+Y+M VI+ RALP + DGLKPV RRI+YAM ELGL++ FK Sbjct: 106 DERIVDLELHLEASQSYLSYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDSKKPFK 165 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K AR VG+VLGK+HPHGD + Y+A+V MAQ FS LVDG GN+G+ D AAMRYT Sbjct: 166 KCARVVGEVLGKFHPHGDQSVYDALVRMAQDFSMSSALVDGHGNFGSLDA-DPPAAMRYT 224 Query: 122 ESRLSKYSELL-LSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 E RL +E + L+++G D+ FDG+ EP +LPARLPN+L+NG+TGIAVGMAT I Sbjct: 225 ECRLKPAAEAMLLADIGLDAVDFTETFDGSQTEPAVLPARLPNLLINGSTGIAVGMATSI 284 Query: 181 PPHNLREVAQAAIALIDQPK-TTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSV 239 PPHNLREVA A + P+ TL+ LL+++ PD+PT I+ R +++Y G+G V Sbjct: 285 PPHNLREVANALVRFASDPERCTLEDLLEVMPAPDFPTGGIIVQQRGGFKEMYRTGKGGV 344 Query: 240 RMRAVWKKED-----------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDE 288 +R E AVVI+++P+Q + A + EQIA + ++ + V D+RDE Sbjct: 345 NLRGAATVEKVSGGGRNGQARDAVVITSIPYQTNKASLCEQIADLVNSRTIEGVSDVRDE 404 Query: 289 SDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILS 348 SD + +V + D + V++ L+A T L+ +NL + + P V +L+EI+ Sbjct: 405 SDRDGMRVVVEI--RRGADANFVLDQLYARTKLQTRVSVNL-VGLVGREPKVLSLMEIMR 461 Query: 349 EWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMS 405 E+L FR D V RR + L+K RLH++EG L D V+ IR + + AL Sbjct: 462 EFLAFRCDAVERRARHELQKASGRLHVVEGYLAVQAAPDAVVAAIRAAKDGPTAQAALQE 521 Query: 406 R-FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKE 464 + F L+E QAEA+L + LR L LE K++ E++EL + L G+L ++ + +E Sbjct: 522 KPFWLSEKQAEAVLAMPLRRLTGLEHDKLKTEEAELTARVEDLTGLLGDRSRVIATVARE 581 Query: 465 LQADAQAYGDDRRSPLQEREE--AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG 522 + +G DRR+ + + AK M+ + + P ++++ G+++ Sbjct: 582 AKELRDTFGVDRRTDIDTDAQIHAKKMNVTLDMLNSPSLVIMTNRGYIKRIDPAVFSKQN 641 Query: 523 L--------NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTG 572 + GD V+F GR +A+ +P S G P T Sbjct: 642 RATRGRNMGKMRGGDEVTKVTHCNGLDTVLFFTDRGRVHAVRAFNIPQASTSALGTPFTR 701 Query: 573 KLTLPPGATVDHMLMES--------DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL 624 L L G ++ ML + L + G ++ V GK + L Sbjct: 702 VLKLAEGESITAMLPVDTTEEPGEEGETSLCFVTARGLIKRTCASEFVGIRNNGKKALVL 761 Query: 625 PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGE 683 + + +++ + + G ++ F + + G K + Sbjct: 762 RKGDRLKHVDIVKKGDGI-IIGGIDGSVIHFDADSVRAQGRAAAGVKAMAFKPDGLDDTS 820 Query: 684 DGLAQLYVLPPQST---------------------LTIHVGKRKIKLRPEELQKVTGERG 722 + LP ++ L + K R Sbjct: 821 EDDDTSEALPANASAGDVEDDSEEDGEDEDAKGPMLFFVSSDGRGKRISVAQF-AQQSRA 879 Query: 723 RRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 RG GL + ++ S + E Sbjct: 880 GRGKKGMGLMKGSKLAALCLTGLDSDEHE 908 Score = 56.1 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 3/111 (2%) Query: 642 MLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI 700 ML ++ GR V+ Q S+ G+G K + + L L + I Sbjct: 855 MLFFVSSDGRGKRISVAQFAQQSRAGRGKKGMGLMKGSKLA-ALCLTGLD-SDEHEHVII 912 Query: 701 HVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 + + R +G + L D V + A GD E Sbjct: 913 GSQGGVMNRYDVASIRPQSGRAAKGVNVMKLSDGDTVRDITLLPAELGDDE 963 >UniRef50_C8PKZ3 DNA gyrase, A subunit n=2 Tax=Campylobacter RepID=C8PKZ3_9PROT Length = 914 Score = 707 bits (1825), Expect = 0.0, Method: Composition-based stats. Identities = 226/662 (34%), Positives = 375/662 (56%), Gaps = 27/662 (4%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 + + + E + +YL+YSM VI+ RALP DGLKPV RRI+YAM++LG+ + +K Sbjct: 8 NQEIIDIDVEESIKTSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMNDLGVGSRQPYK 67 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VGDV+GKYHPHGD+A Y+A+V MAQ FS R P VDGQGN+G+ D AAMRYT Sbjct: 68 KSARIVGDVIGKYHPHGDTAVYDALVRMAQSFSMRIPSVDGQGNFGSIDG-DGAAAMRYT 126 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+R++ +E LL +L + T D+VPN+D +L EP +LPAR+PN+LLNG++GIAVGMAT+IP Sbjct: 127 EARMTPLAEELLKDLDKETVDFVPNYDESLNEPDVLPARVPNLLLNGSSGIAVGMATNIP 186 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PH+L E+ + L++ +L++++ ++GPD+PT II + I + Y+ GRG V++ Sbjct: 187 PHSLDELVGGLLILLENKNASLEEIMGEIKGPDFPTGG-IIYGKKGIIEAYKTGRGRVKI 245 Query: 242 RAVWKKEDGA----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 RA E A +VI LP+Q + AR++EQIA ++ K++ + ++RDESD + R+ Sbjct: 246 RAKTHIEKKASKDVIVIDELPYQTNKARLIEQIADLVKEKQIEGISEVRDESDRDG-IRV 304 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 VI + + + + V+N+LF T +E ++ + + I P + L+E+L +L R+ Sbjct: 305 VIELKRDAMS-EIVLNNLFKQTTMEATFGVIMLAID-GKEPKIFTLIELLKLFLNHRKTV 362 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQA 414 + RR + L+K R HILEGL +A NIDEVI++IRN + + LMSRF L+E Q+ Sbjct: 363 IIRRTIFELQKARARAHILEGLKIALDNIDEVIDVIRNSADTNVARENLMSRFDLSEAQS 422 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 AIL+++L L LE KI E E+ E +L IL SE + ++K EL + Sbjct: 423 GAILDMRLSRLTGLEREKIEEELKEILAEIKRLDAILKSEELIEGIIKDELLEIKDKFKC 482 Query: 475 DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK-------- 526 R + + + E + + + +E + + ++ G+++ + K Sbjct: 483 PRITEIVDDYEDIDIEDL--IANENMVVTITHRGYIKRVPSKTYEKQKRGGKGRVAVTTY 540 Query: 527 AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDH 584 D ++ ++ ++F+ G+ Y + +P +G+ + + L + Sbjct: 541 DDDFIESFFTSNTHDTLMFITDRGQLYWLKVYKIPEGSRTAKGKAVVNLIQLGADEKIMA 600 Query: 585 MLM---ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASD 641 ++ + L+ + G ++ G I+L E+ ++ ++ ++++ Sbjct: 601 IIPTTDFDPSKSLVFFTRNGIVKRTNLSEFKNIRSLGIRAISLDEDDTLVTALIAPNSAE 660 Query: 642 ML 643 + Sbjct: 661 EM 662 Score = 66.9 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 61/152 (40%), Gaps = 13/152 (8%) Query: 538 KSNQPVVFV-DSTGRSYAIDPITLPSARGQGEPLTGK----LTLPPGATVDHMLMESDDQ 592 +N+ ++F+ G + + R G G + + SD Q Sbjct: 716 STNENMLFIATKKGMCLKFNLNKI---RQMGRIARGVKGIKFKEKGDEVIGAAFILSDMQ 772 Query: 593 KLLMASDAGYGFVCTFNDLVARNRAGK--ALITLPENA-HVMPPVVIEDASDMLLAITQA 649 ++L S G G T ++ NR GK + L ++ V++++ D L+A+T + Sbjct: 773 EILSVSQKGIGKRTTASEYRLTNRGGKGVICMKLTNRTGELIGVVMVDEEMD-LMALTTS 831 Query: 650 GRMLMFPVSDLPQLSK-GKGNKIINIPSAEAA 680 G+M+ + + + + G ++N+ + Sbjct: 832 GKMIRVDMQSIRKAGRNTSGVIVVNVEGDDVV 863 Score = 61.1 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 2/125 (1%) Query: 594 LLMASDAGYGFVCTFNDLVARNRAGK-ALITLPENAHVMPPVVIEDASDMLLAITQAGRM 652 ++ + GY + R GK + + + + D L+ IT G++ Sbjct: 507 VVTITHRGYIKRVPSKTYEKQKRGGKGRVAVTTYDDDFIESFFTSNTHDTLMFITDRGQL 566 Query: 653 LMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRP 711 V +P+ S+ KG ++N+ A + P +L +K Sbjct: 567 YWLKVYKIPEGSRTAKGKAVVNLIQLGADEKIMAIIPTTDFDPSKSLVFFTRNGIVKRTN 626 Query: 712 EELQK 716 K Sbjct: 627 LSEFK 631 >UniRef50_P48374 DNA topoisomerase 4 subunit A n=17 Tax=Betaproteobacteria RepID=PARC_NEIGO Length = 768 Score = 705 bits (1821), Expect = 0.0, Method: Composition-based stats. Identities = 327/753 (43%), Positives = 455/753 (60%), Gaps = 46/753 (6%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 L + E AYL Y+M V+ RALP + DG KPVQRRI++AM ++GL A AK KSAR VG+ Sbjct: 17 LGRYAERAYLEYAMSVVKGRALPEVSDGQKPVQRRILFAMRDMGLTAGAKPVKSARVVGE 76 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 +LGKYHPHGDS+ YEAMV MAQ F+ RYPL+DG GN+G+ D AAMRYTE+RL+ + Sbjct: 77 ILGKYHPHGDSSAYEAMVRMAQDFTLRYPLIDGIGNFGSRDG-DGAAAMRYTEARLTPIA 135 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 ELLLSE+ QGT D++PN+DG EP LPARLP +LLNG +GIAVGMAT+IP HNL EV Sbjct: 136 ELLLSEINQGTVDFMPNYDGAFDEPLHLPARLPMVLLNGASGIAVGMATEIPSHNLNEVT 195 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED 249 QAAIAL+ +P L+ + PD+ +IIT E+R+IYE G+GSVR+RA ++ E Sbjct: 196 QAAIALLKKPTLETADLMQYIPAPDFAGGGQIITPADELRRIYETGKGSVRVRARYEIEK 255 Query: 250 -----GAVVISALPHQVSGARVLEQIAAQMRNK------------------KLPMVDDLR 286 V+++ LP + A++L +I Q K L ++D +R Sbjct: 256 LARGQWRVIVTELPPNANSAKILAEIEEQTNPKPKAGKKQLNQDRLNTKKLMLDLIDRVR 315 Query: 287 DESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEI 346 DESD E+P RLV P+S+R+D D +N L A T LE + +NL M+GLD RPA KNL I Sbjct: 316 DESDGEHPVRLVFEPKSSRIDTDTFINTLMAQTSLEGNVSMNLVMMGLDNRPAQKNLKTI 375 Query: 347 LSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSR 406 L EWL FR TV RRL +RL +V KRLHILEG L FL+IDEVI++IR D+PK LM+ Sbjct: 376 LQEWLDFRIVTVTRRLKFRLNQVEKRLHILEGRLKVFLHIDEVIKVIRESDDPKADLMAV 435 Query: 407 FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ 466 FGLTE QAE ILE++LR LA+LE K+ E +EL +E+ +L L E + L+ KE+Q Sbjct: 436 FGLTEIQAEDILEIRLRQLARLEGFKLEKELNELREEQGRLNIFLGDENEKRKLIIKEMQ 495 Query: 467 ADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK 526 AD + +GD RR+ ++E A EP+T++LS+ GW+RS GH++D +K Sbjct: 496 ADMKQFGDARRTLVEEAGRAV---LTQTAADEPITLILSEKGWIRSRAGHNLDLSQTAFK 552 Query: 527 AGDSFKAAVK---GKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVD 583 GD K ++ + + F+ GR+Y+ID +P RG G P++ + L GA Sbjct: 553 EGDRLKQTLEGPHCFTRRHPRFI--RGRTYSIDAAEIPGGRGDGVPVSSLIELQNGAKPV 610 Query: 584 HMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIE-----D 638 ML +Q L++S GYGF+ D+V R +AGK ++T V+PPV + + Sbjct: 611 AMLTGLPEQHYLLSSSGGYGFIAKLGDMVGRVKAGKVVMTADSGETVLPPVAVYASSFIN 670 Query: 639 ASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTL 698 ++A T R L FP+ +L ++KGKG +II + + E+ + + + Sbjct: 671 PDCKIIAATSQNRALAFPIGELKIMAKGKGLQIIGLNAGESMTH-------TAVSSEPEI 723 Query: 699 TIHVGKRKI--KLRPEELQKVTGERGRRGTLMR 729 I R+ + + +RG++G L+ Sbjct: 724 LIESEGRRGAAHKDRLPVALIEAKRGKKGRLLP 756 >UniRef50_C6RQR3 DNA gyrase, A subunit n=3 Tax=Moraxellaceae RepID=C6RQR3_ACIRA Length = 985 Score = 705 bits (1821), Expect = 0.0, Method: Composition-based stats. Identities = 249/822 (30%), Positives = 397/822 (48%), Gaps = 112/822 (13%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 +A+ + +++YL+Y+M VI+ RALP + DGLKPV RR++YAM ELG + + +KKSA Sbjct: 6 IRPIAIEDELKHSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMHELGNDYNKAYKKSA 65 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 R VGDV+GKYHPHGDSA YE +V MAQ FS RY LVDGQGN+G+ D S AAMRYTE R Sbjct: 66 RVVGDVIGKYHPHGDSAVYETIVRMAQDFSLRYQLVDGQGNFGSVDG-DSAAAMRYTEVR 124 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 + K + +L++L + T DW N+DG+ + P+++P R+PN+L+NG GIAVGMAT++ PHN Sbjct: 125 MRKLTHEILADLEKDTVDWEDNYDGSERIPQVMPTRIPNLLINGAAGIAVGMATNMAPHN 184 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 + EV A +A D +++ L++ + GPD+PT II ++ I Y G+G + +R Sbjct: 185 MTEVVNACLAYADNTNISVEGLMEYISGPDFPTGG-IIYGKSGIVDAYRTGKGRLHIRGK 243 Query: 245 WKKEDG------AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + E+ +V + +P+QV+ ARV+E+IA ++ KKL + +LRDESD + + Sbjct: 244 YHFEEDEKTGRTTIVFTEIPYQVNKARVIERIAELVKEKKLEGISELRDESDKDGMRIAI 303 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + R + + V+N+LF T LE S+ IN+ + +G+P + NL +I++ ++ R++ V Sbjct: 304 DLKRGE--NAEVVVNNLFLNTQLENSFSINMVCLD-NGQPKLMNLKDIIAAFIRHRQEVV 360 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKP----------------A 402 RR Y L K +R HILEGL VA NID++I+ I+ P A Sbjct: 361 TRRTMYELRKARERGHILEGLTVALANIDDIIDAIKTSANPAEARERLLAADWAAGGVGA 420 Query: 403 LMSR--------------------------FGLTETQAEAILELKLRHLAKLEEMKIRGE 436 ++ R + L+ TQ AILEL+L L LE+ K+ E Sbjct: 421 MLERAGSVSIRPDEIEGEDPSRPFGLDRDIYRLSPTQVAAILELRLNRLTGLEQDKLHAE 480 Query: 437 QSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLP 496 SE+ + +L IL + ++K+EL Q YGD RR+ + E S D++P Sbjct: 481 YSEILGQITELTAILNDFNLLMAVIKEELVLVLQQYGDARRTEIVES--RIDFSREDLIP 538 Query: 497 SEPVTIVLSQMGWVRSAKGHDI--------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDS 548 E V + +SQ G+ ++ D + K D + + ++ V+ + Sbjct: 539 EEQVVLTVSQSGYAKTQPLSDYAAQRRGGRGKSATSMKEDDFIQHLIVTSNHATVLCFTN 598 Query: 549 TGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVC 606 G+ Y + +P A +G P+ L L T+ +L D K Sbjct: 599 VGKVYRLRVFEVPQASRGSRGRPMINLLPLDANETITAILPVIDAPK-KFTERLAAFKNF 657 Query: 607 TFNDLVARNRAGKALITLPE--------NA--------------HVMPPVVIEDASDMLL 644 + V + LPE + + + + D D ++ Sbjct: 658 VKTNTVKLQDNPVISVHLPELETALAMLDDNADELSAELRTQLKQLCVELAVTDLDDEII 717 Query: 645 A-----------------ITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLA 687 T +G + + + + G + I + ED L Sbjct: 718 IEFAQQAESVRKNYYVFMATASGTVKRVELEQFSNV-RSNGLRAIELNE------EDTLI 770 Query: 688 QLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMR 729 + + + + + + K E + G + MR Sbjct: 771 GVTITDGEQQIMLFSNEGKAIRFAETDVRAMGRSAKGVRGMR 812 Score = 119 bits (298), Expect = 5e-25, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 55/197 (27%), Gaps = 27/197 (13%) Query: 578 PGATVD----HMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPP 633 + + + MA+ +G G I L E ++ Sbjct: 713 DDEIIIEFAQQAESVRKNYYVFMATASGTVKRVELEQFSNVRSNGLRAIELNEEDTLIGV 772 Query: 634 VVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGE--------- 683 I D ++ + G+ + F +D+ + + KG + + + A A Sbjct: 773 T-ITDGEQQIMLFSNEGKAIRFAETDVRAMGRSAKGVRGMRVALAAQAEDTEDTDTDSED 831 Query: 684 ---------DGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRI 734 + L V+P + K P + T +RG +G + Sbjct: 832 EDSSDSNVVSRIVSLVVVPETGEVLCASANGYGKRTPVDDFP-TKKRGGKGVIAIKTS-- 888 Query: 735 DRVEIDSPRRASSGDSE 751 +R A E Sbjct: 889 ERNGELVGAVAIDETKE 905 Score = 91.9 bits (227), Expect = 9e-17, Method: Composition-based stats. Identities = 36/280 (12%), Positives = 91/280 (32%), Gaps = 43/280 (15%) Query: 439 ELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSE 498 L + L + + +++ L+ +L+ + L + + + + + Sbjct: 674 HLPELETALAMLDDNADELSAELRTQLKQLCVELAV---TDLDDEIIIEFAQQAESVRKN 730 Query: 499 PVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRS 552 + + G V+ + + D+ Q ++ + G++ Sbjct: 731 YYVFMATASGTVKRVELEQFSNVRSNGLRAIELNEEDTLIGVTITDGEQQIMLFSNEGKA 790 Query: 553 YAIDPITLPSARGQGEPLTGKLTLPPG--------------------------ATVDHML 586 + R G G + + + ++ Sbjct: 791 IRFAETDV---RAMGRSAKGVRGMRVALAAQAEDTEDTDTDSEDEDSSDSNVVSRIVSLV 847 Query: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE---NAHVMPPVVIEDASDML 643 + + ++L AS GYG +D + R GK +I + N ++ V I D + L Sbjct: 848 VVPETGEVLCASANGYGKRTPVDDFPTKKRGGKGVIAIKTSERNGELVGAVAI-DETKEL 906 Query: 644 LAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARG 682 + I+ G ++ +++ Q + +G ++I + E G Sbjct: 907 MLISDGGTLVRTRAAEVAQTGRNAQGVRLIRLGEGETLVG 946 >UniRef50_C5CCL2 DNA topoisomerase IV subunit A n=41 Tax=Actinobacteria (class) RepID=C5CCL2_MICLC Length = 868 Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats. Identities = 261/794 (32%), Positives = 397/794 (50%), Gaps = 68/794 (8%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 + + + E E ++L Y+ VI RALP DGLKPVQRRI++ MS +GL Sbjct: 23 QENIVDVDVSEEMEASFLEYAYSVIYSRALPDARDGLKPVQRRILFMMSRMGLRPDRGHV 82 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VG+V+GK HPHGD+A Y+AMV +AQPFS R P+VDG GN+G+ DD AA RYT Sbjct: 83 KSARVVGEVMGKLHPHGDAAIYDAMVRLAQPFSLRLPVVDGHGNFGSLDDGP--AAPRYT 140 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+R++ + L ++L +GT D+VPN+D Q+P +LPA PN+L+NGTTGIAVGMAT++ Sbjct: 141 EARMAPAALALTADLDEGTVDFVPNYDNQFQQPAVLPAAYPNLLVNGTTGIAVGMATNMA 200 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNLREV A L+ P+ L+ ++ + GPD P+ I+ +R Y GRG+ RM Sbjct: 201 PHNLREVVAGARHLLADPEAGLEAIMAHIPGPDLPSGGRIV-GLDGVRDAYATGRGTFRM 259 Query: 242 RAVWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 RA E +V++ LP+ V +V+E+I A + KKL + D+ D +D +N R Sbjct: 260 RAAVAVEQVSARRTGLVVTELPYGVGPEKVIERIKAGVDAKKLSGIADVVDLTDRKNGLR 319 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 L I + + + V+ L+ T LE+++ IN N+ +DG+P LL +L ++ R D Sbjct: 320 LQIELK-SGFNPQAVLAALYRHTPLEETFGIN-NVALVDGQPQTLGLLPLLRVYVDHRLD 377 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQ 413 VRRR +RL K RLH++EGLL+A ++IDEVIEIIR+ D+ + LM F LT+ Q Sbjct: 378 VVRRRTGHRLGKHRDRLHLVEGLLLALVDIDEVIEIIRSSDDTAAARTRLMGVFDLTQVQ 437 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 A+ ILEL+LR L K ++++ E+ EL+ +L+ ILAS+ ++ ++ ELQA A +G Sbjct: 438 ADHILELRLRQLTKFSRIELQAERDELQAAIAELEAILASDARLREVVSAELQAVADEHG 497 Query: 474 DDRRSPLQEREE-----------------AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGH 516 DDRR+ L E E A M+P +LS G + Sbjct: 498 DDRRTVLLEAETAAAPAAGPAPSGPTPAGAAEAGVDLMVPDTACWALLSTSGRLLRTADR 557 Query: 517 DIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGE-------- 568 AP + D+F + V + + + S G + + + LP A GE Sbjct: 558 TPIAPQGRRRKHDAFASVVPTTARGEIGALTSAGALHRLQAVDLPVA---GEPSAAPAMT 614 Query: 569 ---PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLP 625 P + L G T+ ++ + + + G NR + L Sbjct: 615 AALPAAELVPLAKGETLVALVPLDT--VMALGTAHGVVKRVRPE--WPLNRQVVDAVALK 670 Query: 626 ENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS-KGKGNKIINIPSAEAARGE- 683 + V+ D +D L+ +T+ G++L + S + G G I + + + Sbjct: 671 DGDAVVGAAPAPDEADQLVFLTRTGQLLRYAASAVRPQGPAGGGVAGIRLAAGDTVLAFG 730 Query: 684 --------DGLAQLYVLPPQSTLTIHVGK---------RKIKLRPEELQKVTGERGRRGT 726 + A P + + +K+ P G RG G Sbjct: 731 VAPAASLTETGADAAAHPRPAVVVTVTDGEADVLGSAPGSVKVTPLGEYPAKG-RGTGGV 789 Query: 727 LMRGLQRIDRVEID 740 L + + + Sbjct: 790 RAHRLLKGESGLVL 803 >UniRef50_A9NF72 DNA topoisomerase IV, subunit A n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NF72_ACHLI Length = 857 Score = 703 bits (1815), Expect = 0.0, Method: Composition-based stats. Identities = 250/768 (32%), Positives = 391/768 (50%), Gaps = 30/768 (3%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + + E++ L + + + YS Y+I DRALP DGLKPVQRRI+YAM ++GL + + Sbjct: 12 IEEKIEKVLLEDIMSSRFGRYSKYIIQDRALPDARDGLKPVQRRILYAMGQMGLAFNKSY 71 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR G+V+GKYHPHGDS+ YEAMV M+Q F R PLVD GN G+ D S AAMRY Sbjct: 72 KKSARIAGEVMGKYHPHGDSSIYEAMVRMSQDFKMRVPLVDMHGNNGSIDG-DSAAAMRY 130 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RLSK +E LL ++ + T ++VPNFD QEP +LPAR PN+L+NG GI+ G AT I Sbjct: 131 TEARLSKEAEFLLKDIDKRTVNFVPNFDDEEQEPTVLPARFPNLLVNGAMGISAGYATKI 190 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL EV A IALID P T D++L ++GPD+PT I+ +A I++ G G + Sbjct: 191 PPHNLNEVIDATIALIDNPNITNDEILKYIKGPDFPTGG-IVQGKAGIKEALTTGSGKII 249 Query: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 +RA E+ +VI+ +P++V+ A ++ QI N + + ++RDE+D E Sbjct: 250 IRAKMNVEEMSKSQDRIVITEIPYEVNKADLVRQIDNLRINNNIEDILEIRDETDQEGLR 309 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 + + + D + N+L ++DL+ +Y N+ I RP + E+L +L ++ Sbjct: 310 IAIDLKK--GADAQFIQNYLLKSSDLQVNYNYNMVAIL-KHRPVLSGAFELLKVYLEHQK 366 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTET 412 + V R NY LE+ KR HI++GL+ + EVIE IR + K + RFG +E Sbjct: 367 EVVTNRSNYELERATKRNHIVDGLIQMTSVVSEVIEEIRKSKNKADSKENIQKRFGFSEL 426 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QAEAI+ L+L L+ + + E+ L KE +L+ IL++ER + +K ELQ Sbjct: 427 QAEAIVMLQLYRLSTTDIQALLDEKDTLYKEITRLEQILSNERILLKTIKSELQEVQTLL 486 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP-GLNYKAGDSF 531 RR+ L+ E + E D++ E + +++ G+V+ A + A + K D+ Sbjct: 487 PSPRRTELEAEIETIKIDEKDLISDEQTYVAITKDGYVKRASLRSVVASKEVGLKENDAM 546 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLMES 589 + + ++ + G+ + + + + G + + G T+ +L S Sbjct: 547 LYEEELNTLDTLLLFTNLGQYIYLPVYKIEEQKWRDLGVYINNIVPTSKGETIIRVLKVS 606 Query: 590 D---DQKLLMASDAGYGFVCTFNDLVARN-RAGKALITLPENAHVMPPVVIEDASDMLLA 645 D DQK+L+ + G D + L ++ ++ + D ++A Sbjct: 607 DFSIDQKILLTTKQGQMKQVNLADFEVSRYNRPLRAMKLSKDDELVSVDY--NQLDNIVA 664 Query: 646 ITQAGRMLMFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGK 704 I++ G +L F +LP G K + + + Y + Sbjct: 665 ISKHGYVLRFDTEELPVYGLTAGGVKSMALAEGDEVA-----VAFYAKESDDFYFLTSRG 719 Query: 705 RKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSEE 752 IK EL K R RRG ++ + I S R S +E Sbjct: 720 HIIKDTVLELPKY--ARNRRGIILVDRIKTSPHFIISASRVSKTQIKE 765 >UniRef50_A9F3U1 DNA gyrase subunit A n=3 Tax=Myxococcales RepID=A9F3U1_SORC5 Length = 800 Score = 703 bits (1814), Expect = 0.0, Method: Composition-based stats. Identities = 268/754 (35%), Positives = 399/754 (52%), Gaps = 48/754 (6%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM-SELGLNASAKFKKSAR 65 +L + + YLNY++ VI RALP + DGLKPVQRRI+YAM +L L AK++KSA Sbjct: 35 DTSLADEAQRRYLNYALSVITSRALPDVRDGLKPVQRRILYAMLHDLHLGPDAKYRKSAA 94 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 VGDV+GKYHPHGD A Y+AMV +AQ F R PL+ G GN+G+ D + AAMRYTE++L Sbjct: 95 VVGDVMGKYHPHGDVAIYDAMVRLAQDFVMRAPLIAGHGNFGSVDG-DAPAAMRYTEAKL 153 Query: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 + LLSELGQ T D+ PN+DGT EP +LP+R PN+L+NG+ GIAVGMAT IPPHNL Sbjct: 154 RPLALELLSELGQRTVDFRPNYDGTRFEPIVLPSRFPNLLVNGSQGIAVGMATSIPPHNL 213 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245 EV A +ALI+ + T +LL V+GPD+PT ++ ++ E+ +Y G+GS+++R W Sbjct: 214 GEVIDACVALIENRELTTHRLLSYVKGPDFPTGGQLHATKKELEAVYTAGQGSLKLRGEW 273 Query: 246 KKEDG--------AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 + E+G +VI+++P+ + ++E+IA + +KKLP + D+RDES R+ Sbjct: 274 QLEEGDGKRGAAPQIVITSIPYGIERKAIVEKIAEVILSKKLPTLVDVRDES--TGEVRI 331 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGL-DG----RPAVKNLLEILSEWLV 352 V+ + D VM +L+ T L + ++NL + D P L EIL+++L Sbjct: 332 VMELKR-GADAQLVMAYLYKQTPLAINVQVNLTCLVPTDNAEIAAPRRLGLHEILTKFLD 390 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGL 409 FR TV RRL + L ++ +R+ ILEG F +DEVI IIR + + LM RF L Sbjct: 391 FRYATVTRRLEFELGELRRRITILEGFEKIFDALDEVIRIIRKSEGKADAAEKLMKRFTL 450 Query: 410 TETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADA 469 E Q +AILELKL LA+LE + ++ + E E +++G+L S+ K +++ EL Sbjct: 451 NEEQTDAILELKLYRLARLEILLVQKDLGEKRAEAKRIEGLLRSDAKRWGIVRDELVEIK 510 Query: 470 QAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529 +YG+ RR+ + + D + +E ++LS GWV+ D + GD Sbjct: 511 GSYGEKRRTKVVGSIDEPEYQAEDFIVAEDANVILSAQGWVKRV-REVKDLASTRIREGD 569 Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589 S AAV G + V F + G Y +P + G G+P+ L G + ++ Sbjct: 570 SVLAAVAGSTRSTVAFFSNLGACYVCRIHDVPQSTGYGDPVQKLFKLADGERLIALMSFD 629 Query: 590 D----------------DQKLLMASDAGYGFVCTFND-LVARNRAGKALITLPENAHVMP 632 L + G GF + R+G+ L E V+ Sbjct: 630 PRALDVPAQTPDSAEPEPPFALAITRGGLGFRFSLRPHRDPSTRSGRRFAKLNEGDEVLF 689 Query: 633 PVVIEDASDMLLAITQAGRMLMFPVSDLPQL-SKGKGNKIINIPSAEAARGEDGLAQLYV 691 + D +D +L + L V +L L GKG+ ++ + E G Sbjct: 690 VHAV-DGADRVLCASSDAWALSVAVEELALLSGPGKGSVVMRVAEGERLVG-----AALA 743 Query: 692 LPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRG 725 L P +T+ K K K+ G+RG +G Sbjct: 744 LGPSDVITVETEKG--KTLEIAASKIAGQRGTQG 775 >UniRef50_Q8CSN8 DNA topoisomerase 4 subunit A n=77 Tax=Bacteria RepID=PARC_STAES Length = 800 Score = 701 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 231/763 (30%), Positives = 398/763 (52%), Gaps = 31/763 (4%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 MS++ + L+L + + + YS Y+I +RALP + DGLKPVQRRI++AM G F Sbjct: 1 MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNF 60 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 +KSA+TVGDV+G+YHPHGDS+ Y+AMV ++Q + R+ L++ GN G+ D AAMRY Sbjct: 61 RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSID-NDPPAAMRY 119 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE++LS+ SE LL ++ + T ++PN+D T EP +LPAR PN+L+NG+TGI+ G ATDI Sbjct: 120 TEAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDI 179 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL EV Q + IDQP T++QL+ ++GPD+PT II I+K YE G+G V Sbjct: 180 PPHNLAEVIQGTLKYIDQPDITINQLMKYIKGPDFPTG-GIIQGIEGIKKAYETGKGKVV 238 Query: 241 MRAVWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 +R+ +E ++++ +P++V+ + ++++I +KK+ + ++RDE+D Sbjct: 239 VRSRVDEEPLRSGRKQLIVTEIPYEVNKSSLVKKIDELRADKKVDGIVEVRDETDRTGLR 298 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 + + + + + + N+L+ +DL+ SY N+ I +GRP + L EI+ +L + Sbjct: 299 IAIELKK--DANSESIKNYLYKNSDLQISYNFNMVAIS-EGRPKLMGLREIIESYLNHQI 355 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTET 412 + V R Y LE+ KR+HI+EGL+ A +DEVI +IRN + K L++ + TE Sbjct: 356 EVVTNRTRYDLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEYDFTEA 415 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QAEAI+ L+L L + ++ E ELE +L+ IL + + ++K EL + + Sbjct: 416 QAEAIVMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHEALLAVIKDELNEIKKKF 475 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG---LNYKAGD 529 DR S ++ + + M+PSE V + L+Q G+++ +A G + K GD Sbjct: 476 KVDRLSTIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGLKDGD 535 Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLM 587 + V+ + GR I L R + G+ ++ + + V ++ Sbjct: 536 RLLKHESVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVNVYN 595 Query: 588 ESD---DQKLLMASDAGYGFVCTFNDLVARN-RAGKALITLPENAHVMPPVVIEDASDML 643 E D + +MA+ G + + + + + ++ V +E ++ Sbjct: 596 EKDFKNEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDKDELINVVRLES-DQLI 654 Query: 644 LAITQAGRMLMFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHV 702 +T G L + ++L + G K IN+ + + + ++ + Sbjct: 655 TVLTHKGMSLTYSTNELSDTGLRAAGVKSINLKDEDYVVMTEDV------NDSDSIIMVT 708 Query: 703 GKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRA 745 + +K + + +R +RG + + I + Sbjct: 709 QRGAMKRIDFNVLQ-EAKRAQRGITLLKELKKKPHRIVAGAVV 750 >UniRef50_B6BPL3 DNA gyrase, A subunit n=3 Tax=Bacteria RepID=B6BPL3_9RICK Length = 859 Score = 700 bits (1808), Expect = 0.0, Method: Composition-based stats. Identities = 238/812 (29%), Positives = 401/812 (49%), Gaps = 73/812 (8%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 + + +++H+ ++YL+Y+M VI+ RALP I DGLKPV RRI+YAM + G + S +F+ Sbjct: 9 DNNIKLISMHDEMSSSYLSYAMSVIVSRALPDIRDGLKPVHRRILYAMYKGGYDWSKQFR 68 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VGDV+GKYHPHGD + Y+A+V M Q FS PLV GQGN+G+ D AAMRYT Sbjct: 69 KSARIVGDVIGKYHPHGDQSVYDALVRMVQDFSMSLPLVQGQGNFGSIDG-DPAAAMRYT 127 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+RLSK S+ L+ ++ + T + N+D T +EP +LPA+ PN+L+NG GIAVGMAT IP Sbjct: 128 ETRLSKVSQYLIDDIEKNTISFKSNYDETEKEPTVLPAQYPNLLVNGAGGIAVGMATSIP 187 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNL E+ +ALID + +L+ V GPD+PT II + I+ Y NGRGS ++ Sbjct: 188 PHNLGEIINGTLALIDNKDIKIRELMKYVPGPDFPTGGVII-GKDIIKHGYNNGRGSFKI 246 Query: 242 RAVWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 R E +VI+++P+QV+ + + E+IA +R KK+ + D+RDES+ E Sbjct: 247 RGEVSVESLKNGRERLVITSIPYQVNKSVLNERIAQLVREKKIEGIKDIRDESNREGIRV 306 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 + + N V+ + + L+ T +E S+ N I + G+P L + LS +L FR D Sbjct: 307 AIDL--RNGVEPETIKRQLYKNTQIESSFGFNTLAI-VQGKPKTCTLKDFLSNFLSFRED 363 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMS----------- 405 V ++ + L+K +R HIL GL V+ N+D++I+IIR+ P+ A + Sbjct: 364 IVIKKTKFDLQKAEERAHILIGLSVSVENLDKIIKIIRSSKTPEDAKQAILKTKWKINKS 423 Query: 406 --------------RFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451 + L+E Q AILEL+L+ L L +I E +L + + + I+ Sbjct: 424 QKLISLVEGKKGKGLYSLSEPQVIAILELRLQKLTALGINEIEVEIKKLAELIARYKKII 483 Query: 452 ASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVR 511 +S++++ ++ +EL+ + + RR+ + + + + + V I ++ G+++ Sbjct: 484 SSKKELLKVISEELKNIKEKFAVPRRTKIIDA--VLNYDIEETIQKQSVIITVTLQGYIK 541 Query: 512 S--------AKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPS- 562 K G+ + DS + ++ V+F + G Y + +P Sbjct: 542 RGSLDGVKQQKRGGKGKSGITTRDQDSVVQTLSVNTHTSVLFFSTEGLVYKVKAWKIPEG 601 Query: 563 -ARGQGEPLTGKLTLPPGATVDHMLMESDDQK------LLMASDAGYGFVCTFNDLVARN 615 + +G+ L L L ++ ++ +++ ++ A+ G + D + N Sbjct: 602 SSSSKGKSLFNILPLKSHQSISSIMPMPENETDLKNYQIIFATAQGKVRKNSLEDFSSIN 661 Query: 616 RAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQ-LSK-GKGNKIIN 673 +GK + L N ++ + +D D ++ T+ G+ + F L + KG K I Sbjct: 662 ASGKIAMKLDNNDKIVGVKICQDDQD-IILSTKFGKCIRFEAKKLRVFKGRSSKGIKGIE 720 Query: 674 IPSAEAARGEDGLAQ--------------LYVLPPQSTLTIHVGKRKIKLRPEELQKVTG 719 + + + + + + K +VT Sbjct: 721 LAPNDQIVSLSVIDNDKTKKNGKKSKDDKSEIKAKEKFVLSISENGYGKKTSHIDYRVT- 779 Query: 720 ERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 RG +G + G+ R + E Sbjct: 780 NRGGKGII--GIVNSPRNGNITSSFPVFEGDE 809 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 73/221 (33%), Gaps = 31/221 (14%) Query: 501 TIVLSQMGWVRSAKGHDIDAPGLNYK------AGDSFKAAVKGKSNQPVVFVDSTGRSYA 554 I + G VR D + + K D + +Q ++ G+ Sbjct: 640 IIFATAQGKVRKNSLEDFSSINASGKIAMKLDNNDKIVGVKICQDDQDIILSTKFGKCIR 699 Query: 555 IDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDD--------------------QKL 594 + L +G+ + L P + + + +D + + Sbjct: 700 FEAKKLRVFKGRSSKGIKGIELAPNDQIVSLSVIDNDKTKKNGKKSKDDKSEIKAKEKFV 759 Query: 595 LMASDAGYGFVCTFNDLVARNRAGKALI---TLPENAHVMPPVVIEDASDMLLAITQAGR 651 L S+ GYG + D NR GK +I P N ++ + + D +L T GR Sbjct: 760 LSISENGYGKKTSHIDYRVTNRGGKGIIGIVNSPRNGNITSSFPVFEG-DEILISTNKGR 818 Query: 652 MLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYV 691 ++ V ++ + +G +II + E + + Sbjct: 819 VIRVAVKEIRTAGRNTQGVRIIKLSGEEKVVSAIKIDDNLI 859 >UniRef50_P72525 DNA topoisomerase 4 subunit A n=182 Tax=Firmicutes RepID=PARC_STRPN Length = 823 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 226/747 (30%), Positives = 382/747 (51%), Gaps = 37/747 (4%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + ++L + + YS Y+I DRALP I DGLKPVQRRI+Y+M++ ++KS Sbjct: 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKS 62 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 A++VG+++G +HPHGDS+ Y+AMV M+Q + R LV+ GN G+ D AAMRYTE+ Sbjct: 63 AKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDG-DPPAAMRYTEA 121 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 RLS+ + LL ++ + T + NFD T +EP +LPA PN+L+NG+TGI+ G ATDIPPH Sbjct: 122 RLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPH 181 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL EV AA+ +ID P +D+L++ + GPD+PT A II R EI+K YE G+G V +R+ Sbjct: 182 NLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGA-IIQGRDEIKKAYETGKGRVVVRS 240 Query: 244 VWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + E +VI +P++++ A ++++I N K+ + ++RDESD + + Sbjct: 241 KTEIEKLKGGKEQIVIIEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAI 300 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + + + + V+N+LF TDL+ +Y N+ I + P ++ ILS ++ RR+ + Sbjct: 301 ELKK--DANTELVLNYLFKYTDLQINYNFNMVAID-NFTPRQVGIVPILSSYIAHRREVI 357 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQAE 415 R + EK KRLHI+EGL+ +DEVI +IR + + K L + TE QAE Sbjct: 358 LARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAE 417 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 AI+ L+L L + + ++ E++EL ++ L I+ ER M NL+KKEL+ + + Sbjct: 418 AIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATP 477 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP---GLNYKAGDSFK 532 R S L++ +A + ++ E + +++ G+++ A + + D Sbjct: 478 RLSSLEDTAKAIEIDTASLIAEEDTYVSVTKAGYIKRTSPRSFAASTLEEIGKRDDDRLI 537 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKL-TLPPGATVDHMLM-- 587 K+ Q ++ S G L R + GE L+ + + ++ + Sbjct: 538 FVQSAKTTQHLLMFTSLGNVIYRPIHELADIRWKDIGEHLSQTITNFETNEEILYVEVLD 597 Query: 588 -ESDDQKLLMASDAGYGFVCTFNDLVA---RNRAGKALITLPEN-AHVMPPVVIEDASDM 642 D + G + L ++ ++ I+ D Sbjct: 598 QFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDDTDQIVAVAPIK--LDD 655 Query: 643 LLAITQAGRMLMFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 ++ ++Q G L F + ++P + K G K +N+ +D L ++ S + Sbjct: 656 VVLVSQNGYALRFNIEEVPVVGAKAAGVKAMNLKE------DDVLQSGFICNTSSFYLL- 708 Query: 702 VGKRKIKLRPEELQKVTGERGRRGTLM 728 + +K E + R +RG + Sbjct: 709 TQRGSLKRVSIEEI-LATSRAKRGLQV 734 Score = 48.8 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 22/159 (13%), Positives = 49/159 (30%), Gaps = 13/159 (8%) Query: 478 SPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGL---------NYKAG 528 + + EE + D ++++G ++ + + K Sbjct: 582 TNFETNEEILYVEVLDQFDDATTYFAVTRLGQIKRVERKEFTPWRTYRSKSVKYAKLKDD 641 Query: 529 -DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLM 587 D A K VV V G + + +P + + L + + Sbjct: 642 TDQIVAVAPIK-LDDVVLVSQNGYALRFNIEEVPVVGAK-AAGVKAMNLKEDDVLQSGFI 699 Query: 588 ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE 626 + L+ + G + +++A +RA + L L E Sbjct: 700 CNTSSFYLL-TQRGSLKRVSIEEILATSRAKRGLQVLRE 737 >UniRef50_Q2S2H4 Type II DNA topoisomerase, A subunit n=2 Tax=Rhodothermaceae RepID=Q2S2H4_SALRD Length = 777 Score = 699 bits (1804), Expect = 0.0, Method: Composition-based stats. Identities = 256/765 (33%), Positives = 387/765 (50%), Gaps = 52/765 (6%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSE-LGLNASAKFKKSA 64 E + LHE YLNY++ VI RALP I DGLKPVQRRI++AM + L L S + +KSA Sbjct: 5 ETIPLHETARERYLNYALSVITSRALPDIRDGLKPVQRRILFAMFDSLNLYPSKRHRKSA 64 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 VG+ +GKYHPHGD A Y+AMV MAQ FS R PLVDG GN+G+ D S AAMRYTE++ Sbjct: 65 TVVGETMGKYHPHGDKAIYDAMVRMAQSFSLRAPLVDGHGNFGSLDG-DSAAAMRYTEAK 123 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 L + +L L T D+ NFDG+L+EP +LPAR+PN+L+NG +GIAVGMAT+IPPHN Sbjct: 124 LQPLAMEMLEGLRDETVDYRDNFDGSLEEPVVLPARVPNLLVNGASGIAVGMATNIPPHN 183 Query: 185 LREVAQAAIALIDQPKTTLDQLLD-IVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 L EV AA+ +I++P+ L+ +QGPD+PT I+ ++ E+ +IYE G G++ MR Sbjct: 184 LGEVVDAALHMIEEPEVDTSTLVRDHIQGPDFPTGGRILNTQDELAEIYETGSGTIEMRG 243 Query: 244 VWKKEDGA-VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 ++ + +I ++P+ V ++++E+IA + + +P + ++RDES + R+V+ + Sbjct: 244 AYRTKGKTRAIIESVPYGVDKSKIVEEIADHIAEENVPQLSNVRDESTDD--VRIVLELK 301 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLD-----GRPAVKNLLEILSEWLVFRRDT 357 D + M +LF T L+K + +NL + P +L IL +L FR D Sbjct: 302 R-GSDTEAAMAYLFKHTKLQKRFHVNLTCLVPTESTDVKAPKQVDLRTILRYFLDFRLDV 360 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQA 414 V RRL L ++ R+HILEG F +DE IEIIR + LM RF L E Q Sbjct: 361 VTRRLQNELAELEARIHILEGFETIFDALDEAIEIIRASKNKADAAQRLMHRFQLDEEQT 420 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 +AILE +L L+++E IR E E + ++ +L E ++K ELQ Y D Sbjct: 421 DAILETQLYKLSQMEIEAIRDELGEKRARAEGIRRLLDDEDARWGIVKDELQDIRDEYTD 480 Query: 475 DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAA 534 +RRS L +E D + E V +++++ GWV+ G D + + GD A Sbjct: 481 ERRSTLVGPGADMEYTEEDYIVDEDVHVIVTRDGWVKRQ-GTYSDLDAIRTRDGDEVGWA 539 Query: 535 VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESD---- 590 + G + V F + G Y +PS G G+P+ + G V ++ D Sbjct: 540 LAGSTRATVGFFTNYGTCYTTRITEIPSTTGYGDPVQKLFSFDDGEHVVGVVSFDDRALP 599 Query: 591 -----------------------DQKLLMASDAGYGFVCTFNDLVARN-RAGKALITLPE 626 ++ S G T + + + G+ + L + Sbjct: 600 DPVPAEPSEQGELFDPDDPDAPDQPYVVAISKGGQATRFTLDGYLEPSISTGRKYMRLED 659 Query: 627 NAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQL-SKGKGNKIINIPSAEAARGEDG 685 V + + + + GR L+FPV + KG + I + + Sbjct: 660 GDEVARVHLAR-GDENICLASHDGRALVFPVHQVSVYKGPAKGVRAIRLEDNDRV----- 713 Query: 686 LAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRG 730 L + LT+ + ++ T RG +GTL+ Sbjct: 714 LDFALSTRARDGLTVETNNGREEIVRTTKFDAT-NRGAKGTLVIK 757 >UniRef50_Q21V46 DNA topoisomerase IV subunit A n=83 Tax=Bacteria RepID=Q21V46_RHOFD Length = 796 Score = 699 bits (1804), Expect = 0.0, Method: Composition-based stats. Identities = 316/768 (41%), Positives = 448/768 (58%), Gaps = 55/768 (7%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGL-------NASAKF 60 L L + + AYL Y++ V+ RALP + DG KPVQRRI+Y+MS +GL N AK Sbjct: 24 LNLATYAQRAYLEYALSVVKGRALPDVCDGQKPVQRRILYSMSRMGLGFGGPNGNTGAKP 83 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KSAR VGDVLG++HPHGDS+ Y+A V MAQ FS RYPL+DG GN+G+ D AAMRY Sbjct: 84 VKSARIVGDVLGRFHPHGDSSVYDAAVRMAQDFSQRYPLIDGHGNFGSRDG-DGAAAMRY 142 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RL+K + LLL E+ +GT D++PN+DG+ QEP LPARLP LLNG +GIAVG+AT+I Sbjct: 143 TEARLAKITGLLLDEIDEGTVDFMPNYDGSTQEPSQLPARLPFNLLNGASGIAVGLATEI 202 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 P HNLREVA A IALI P+ + L ++ GPDYP +II+S +I + Y +GRGS++ Sbjct: 203 PSHNLREVADACIALIKSPQLSESDLFALIPGPDYPGGGQIISSAEDIAEAYRSGRGSLK 262 Query: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQ----MRNKK------------- 278 RA WK ED +V++ LP VS RVLE+I ++ K Sbjct: 263 CRARWKIEDLARGQWRLVLTELPPGVSTQRVLEEIEELSNPKVKAGKKALSLEQNQLKAT 322 Query: 279 -LPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR 337 L ++D +RDES + RLV P+++R+ +++ L A T LE S INL MIGLDGR Sbjct: 323 LLSVLDGVRDESSKDAAVRLVCEPKTSRISQQELITTLLAHTSLETSSPINLTMIGLDGR 382 Query: 338 PAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED 397 P K+L ++L+EW+ FR+ T+ RR +RL KVL R+HILEG + LNIDEVI IIR D Sbjct: 383 PTQKSLRQMLTEWIAFRQKTIERRSQHRLGKVLDRIHILEGRALVLLNIDEVIAIIRQAD 442 Query: 398 EPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKM 457 EPK AL++RF L++ QAE ILE++LR LA+LE +KI E + L E+ +L+ IL S + Sbjct: 443 EPKAALIARFHLSDRQAEDILEIRLRQLARLEAIKIEQELAGLRGEQQKLEEILGSPSAL 502 Query: 458 NNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKG-- 515 L+ KE++ADA+ + D RR+ +Q K + EPVT+V+SQ GWVR+ KG Sbjct: 503 RRLMIKEIEADAKTFADPRRTLIQA---EKKAVLEVKVVDEPVTVVVSQKGWVRAQKGWA 559 Query: 516 -----HDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPL 570 + + ++KAGD+ + ++ ++ S GR Y++ LP ARG G+P+ Sbjct: 560 SERAANGVLPAEYSFKAGDALYDTFECRTVDTLLAFGSNGRVYSVAVALLPGARGDGQPM 619 Query: 571 TGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHV 630 T L L G + + LL++S GYGF+ + ++ +R +AGKA +T + Sbjct: 620 TSLLELEAGTQLLYYFAGPAPATLLLSSSGGYGFLASVENMTSRLKAGKAFVTCNAGEIL 679 Query: 631 MPPVVIEDAS--------DMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAAR 681 P + S + + GR+L F +S L ++ G+G +I++ + Sbjct: 680 CRPSPVAGGSGATPWPAATHVACASAGGRILTFEISQLKTMATGGRGLMLIDLEDKDRLA 739 Query: 682 GEDGLAQLYVLPPQSTLTIHVGK-RKIKLRPEELQKVTGERGRRGTLM 728 G + + GK R L L RGR+G + Sbjct: 740 GACAYTRSVKIEG----LGRGGKPRDETLEIRSLNNARALRGRKGKVA 783 >UniRef50_B5Y886 DNA gyrase, A subunit n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y886_COPPD Length = 758 Score = 698 bits (1802), Expect = 0.0, Method: Composition-based stats. Identities = 255/750 (34%), Positives = 401/750 (53%), Gaps = 45/750 (6%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + E + +Y++Y+M VI+ RALP + DGLKPVQRRI+Y+MSE G + +KKS Sbjct: 3 GIHEREITEELKQSYIDYAMSVIVGRALPDVRDGLKPVQRRIIYSMSETGSTYNNPYKKS 62 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VGDVLGKYHPHGD++ Y+A+V MAQ F RYPLVDG GN+G+ D AAMRYTE Sbjct: 63 ARIVGDVLGKYHPHGDASVYDALVRMAQDFVMRYPLVDGHGNFGSMDG-DPPAAMRYTEV 121 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 RL++ SE L+ +L + T +WVPNFDG+L+EP++LPA P +L+NG++GIAVG++T IPPH Sbjct: 122 RLTRLSEYLVQDLDKDTVNWVPNFDGSLKEPEVLPAVFPQLLVNGSSGIAVGVSTYIPPH 181 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL E+ A + + P+ T QL+ V+GPD+PT +II + + K+YE G+G +R+R Sbjct: 182 NLGEIIDATLHFLHNPEATSRQLMRFVKGPDFPTGGQIINPQD-LVKVYEEGKGVIRVRG 240 Query: 244 VWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 K E+ +VI +P+ V+ A ++ QIA +R++KL VD++RDES+ + ++ Sbjct: 241 RAKLEEGHGQKRRLVIYEIPYMVNKAELVSQIAQLIRDRKLSGVDEVRDESNRQGVRVVL 300 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + + ++N L+ T LE S+ IN+ + DG P L + ++ ++ FR++T+ Sbjct: 301 ELKK--GASFHHILNQLYEQTALENSFAINM-VALKDGAPVQLTLRDYIASFVDFRKETI 357 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQAE 415 RR Y L+K KR ++EG+L A NID VIEIIRN D+ K LMS+ GLTE QAE Sbjct: 358 LRRTRYLLDKASKRREVVEGILKALDNIDLVIEIIRNAETTDQAKRRLMSQIGLTEVQAE 417 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 A+LE+KLR L +E+ K+ E L K + IL SE K+ ++ +EL+ + + D Sbjct: 418 AVLEIKLRSLVHMEKEKVEQELESLLKAIAEYTEILNSETKLLEVIAEELKHVKKLFADQ 477 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 RR+ + ++ E I L + G +R +K + + Sbjct: 478 RRTLIGFSDQQTET---VQAAEETFFIELLEYGIIRRSKTQT------------NLVDFI 522 Query: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 + + + PV+F+ + G+ + I +P ++ +G L + V +L+ + +Q+L+ Sbjct: 523 EVQGSDPVMFLTNFGKIFCISAYEIPESQ-RGVALNALFPMGNDEKV--LLLGTQNQELI 579 Query: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 S+ G G + +R G + L V V + L+ I+ G+ L Sbjct: 580 AISEKGKGKRFRLDVEKIPSRGGYYFL-LDPGDMVSVIVPVTS--KELVVISAQGKALRL 636 Query: 656 PVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEEL 714 V +P+ + G K++ + G L Q + K + Sbjct: 637 DVESIPERGLRTGGVKVMRTYEGDRVVGATCLK-------QKYIVTMTENAYAKRTDIDE 689 Query: 715 QKVTGERGRRGTLMRGLQRIDRVEIDSPRR 744 RG G + + + Sbjct: 690 IPKR-NRGAAGVFIH--KANETTGPVIGVS 716 >UniRef50_C5B4N9 DNA gyrase subunit A n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4N9_METEA Length = 894 Score = 693 bits (1790), Expect = 0.0, Method: Composition-based stats. Identities = 246/833 (29%), Positives = 396/833 (47%), Gaps = 96/833 (11%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 +R + E E++YL+Y M + RALP + DG+KPV RRI+++M+E A K KSA Sbjct: 18 VKRTSFTEEMEDSYLSYMMSTVTARALPDVRDGMKPVHRRIMFSMAESNFTADRKHVKSA 77 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 + VGDV+G+YHPHGD+A Y+AMV M Q +S RYPL+D QGN+G+ D AAMRYTESR Sbjct: 78 KVVGDVMGQYHPHGDTAIYDAMVRMGQHWSLRYPLIDPQGNFGSID-NDPPAAMRYTESR 136 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 L + + L+++LG+G D+ PN+D + +EP +LPAR PN+L+NG GIAVGMAT+IPPH+ Sbjct: 137 LERLAGHLVADLGEGVVDFRPNYDSSCKEPVVLPARFPNLLVNGGIGIAVGMATNIPPHH 196 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 L E +A + + P TLD+++ ++ GPD PT +I R+ IR+ + GRG++R+ V Sbjct: 197 LGETIEACLLRLANPAVTLDEIMRVMPGPDLPTGG-VIHGRSGIRQAFATGRGAIRVSGV 255 Query: 245 WKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 E+ +VI+ LP+ V A +E++A + KK+ + D+RDES + R+VI Sbjct: 256 ASVEEGKAGRRRIVIAQLPYLVVKAEFVEKLAELVEEKKIEGISDIRDESSDKAGIRIVI 315 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 R + D V+N L TD + +N+ + GRP +L++L E++ FRR+ VR Sbjct: 316 DVRKD-ADPAVVLNRLREKTDFVTNLNVNMTCLDSRGRPRTMGVLQVLGEFVDFRREVVR 374 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMS----------- 405 RR +RLEK + LH GL A L IDE++ +IR+ DE + AL++ Sbjct: 375 RRTMHRLEKTREDLHRQIGLYAATLRIDEIVALIRSSHDIDEARAALLALDFDTSGEFAQ 434 Query: 406 -------------RFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILA 452 F L++ Q AILE++L L LE KI EL E IL Sbjct: 435 LLFEVDPDVPVGDTFRLSDAQVRAILEMRLSRLTGLERDKIAERARELSVEIGGHLEILN 494 Query: 453 SERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS 512 + ++ ++++EL+ A+ D RR+ +++ A+S+ D++ + + + ++ G+V+ Sbjct: 495 VKAVLDGVVRRELEEIKAAFPDGRRTAIEDSA-LDALSDEDLVELKDIVVTVTAGGYVKR 553 Query: 513 AKGHDI--DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGE 568 + D + + P++F + G ++A LP A +G Sbjct: 554 TDLPAYMGRQKAADEAVEDPVATTIVCTTKTPLLFFTNRGLAHAEVAHKLPEAAPNVRGR 613 Query: 569 PLTGKLTLPPGATVDHMLMESDDQ------KLLMASDAGYGFVCTFNDLVARNRAGKALI 622 L L L TV ++ DD+ L+ +D G +D N+ GK I Sbjct: 614 ALVNFLELKAEETVQAIVALPDDRAAIEKLSLIFVTDFGTIRRNDASDFARVNKGGKVAI 673 Query: 623 TLPENA-----HVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGK---GNKIINI 674 L + ++ +++ D + ++ G F V+DL + K + G I++ Sbjct: 674 KLEDENGEPQGKLVSVLLVSPEDD-VALASRDGLCCRFNVADLRVM-KSRDSVGVAGISL 731 Query: 675 PSAEAARGEDGLAQLYVL-------------------------------------PPQST 697 + L + Sbjct: 732 GRKDKVISVSVLRHFEATGTEREAYLAGGSARTKDETTGEPATFELPSDRMLAMQEAEQL 791 Query: 698 LTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDS 750 + K ++T R G + + DR Sbjct: 792 ILSVTENGFAKRTSSHAYRIT---ARGGQGVEAAKLADRTGDLVALMPVEEQD 841 Score = 53.0 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 31/270 (11%), Positives = 74/270 (27%), Gaps = 62/270 (22%) Query: 479 PLQEREEAKAMSEHDMLPSEPV-TIVLSQMGWVRSAKGHDIDAPG----LNYKAGDS--- 530 +E +A D E + I ++ G +R D + K D Sbjct: 622 KAEETVQAIVALPDDRAAIEKLSLIFVTDFGTIRRNDASDFARVNKGGKVAIKLEDENGE 681 Query: 531 ----FKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHML 586 + + V G + L + + ++L V + Sbjct: 682 PQGKLVSVLLVSPEDDVALASRDGLCCRFNVADLRVMKSRDSVGVAGISLGRKDKVISVS 741 Query: 587 ME-------------------------------------------SDDQKLLMASDAGYG 603 + +Q +L ++ G+ Sbjct: 742 VLRHFEATGTEREAYLAGGSARTKDETTGEPATFELPSDRMLAMQEAEQLILSVTENGFA 801 Query: 604 FVCTFNDLVARNRAG--KALITLPE--NAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD 659 + + R G L + ++ + + + D+L+ T AG+ ++ Sbjct: 802 KRTSSHAYRITARGGQGVEAAKLADRTGD-LVALMPV-EEQDVLVITTDAGKTFRTSAAE 859 Query: 660 LPQLSKG-KGNKIINIPSAEAARGEDGLAQ 688 +P +++G +G + + +A +A Sbjct: 860 VPIMARGTQGTRAFALEGRQAIVSVVKIAA 889 >UniRef50_D2MM14 DNA topoisomerase IV, A subunit n=2 Tax=Erysipelotrichaceae RepID=D2MM14_9FIRM Length = 830 Score = 692 bits (1787), Expect = 0.0, Method: Composition-based stats. Identities = 221/759 (29%), Positives = 377/759 (49%), Gaps = 30/759 (3%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 L + + Y+ Y+I +RALP + DGLKPVQRRI+YAM G ++KSA+T Sbjct: 15 NQRLEDIMGAGFGRYAKYIIQERALPDVRDGLKPVQRRILYAMYNDGNTHDKPYRKSAKT 74 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 VG V+G YHPHGDS+ Y+AMV M+Q + R P +D GN G+ D AAMRYTE+RL+ Sbjct: 75 VGLVIGNYHPHGDSSVYDAMVRMSQDWKVRMPFIDMHGNNGSID-DDPAAAMRYTEARLA 133 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 K ++++ +L + T + PNFD T EP +LP P +L+NG TGIA G AT++PPHN+ Sbjct: 134 KVTQVMEEDLDKDTVEMSPNFDDTDIEPTVLPVSFPVMLVNGATGIAAGYATNMPPHNIN 193 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 EV A I I + +L+ ++DI+ GPD+PT I+ IR+ + G+G + +RA + Sbjct: 194 EVIDATIYRIQNAECSLNDVMDILPGPDFPTGG-IVQGEEGIREAFTTGKGRIVVRAKTE 252 Query: 247 KEDG----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 +VI+ +P++V +++++ ++++ + D+RDESD ++ V + Sbjct: 253 IIQEKNLQQIVITEIPYEVVKGNLVKKMDEIRISREVDGLIDVRDESDRNGLRIVIDVRK 312 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRL 362 VD + ++ + F TDL+ Y N N+ + RP LL +L ++ FR++ V RR Sbjct: 313 --DVDANLILQYFFKNTDLQVYYNYN-NVAIMRERPVQVGLLGLLDAFIDFRKEVVLRRS 369 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQAEAILE 419 + L K+ R+HI+EGL+ A +DEVI IIR + K L+ FG E QAEAI+ Sbjct: 370 RFELNKMEARVHIIEGLIKAVSVLDEVIAIIRASKDKADAKFRLIENFGFDEVQAEAIVT 429 Query: 420 LKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSP 479 L+L L+ + + +R E ++L + ++ + IL +E + +L+ +EL+ + YGD RR+ Sbjct: 430 LRLYRLSNTDIVSLRNEFAQLVNQIEETKSILENESVLRHLMVQELRQVKENYGDARRTK 489 Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDA---PGLNYKAGDSFKAAVK 536 ++ + + +S+ M+PSE V I +S+ G+++ +A K GD + Sbjct: 490 IEAKIDEINISKEAMIPSEQVMITVSKDGYLKRVSLRSFNAVRDQETGLKTGDQLIGQRE 549 Query: 537 GKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLMESD---D 591 + ++ S G + + + + G L + + V ++ + Sbjct: 550 VNTLDTLLLFTSKGNYAMVPVWQIDDEKWKEIGSHLNKLVRVDSEEKVISAIVVKNFDSY 609 Query: 592 QKLLMASDAGYGFVCTFNDL-VARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAG 650 + + + +D V R I L E V + S +L +T+ G Sbjct: 610 AWITLVTKGNKIKKTKLSDWKVERTSRLFKAINLEEKDEVC-AAFMTYQSQEVLVVTKDG 668 Query: 651 RMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLR 710 L +P++ KG + + ED +A + L + K Sbjct: 669 YALRMSQDQIPEVKASKGVQAMK------VAFEDEVAFATSVYSSDNLLFLTDTLQAKRI 722 Query: 711 PEELQKVTGERGRRGTLMRGLQRID--RVEIDSPRRASS 747 E +++G G + + + R++ + Sbjct: 723 HLEDLRLSGRAKNMGERICKKNKSNPSRLQYVLAVKTGQ 761 >UniRef50_B3TAI1 Putative DNA gyrase/topoisomerase IV, subunit A n=1 Tax=uncultured marine microorganism HF4000_APKG8D23 RepID=B3TAI1_9ZZZZ Length = 898 Score = 690 bits (1782), Expect = 0.0, Method: Composition-based stats. Identities = 241/845 (28%), Positives = 380/845 (44%), Gaps = 110/845 (13%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 M++ R + + E +Y+NY+M VI+ RALP + DGLKPV RRI++ M + G + Sbjct: 1 MAENLLRRDISDEMEESYINYAMSVIIGRALPDVRDGLKPVHRRILWGMHQAGHTHDKGY 60 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KSAR+VG+V+GKYHPHGD A Y+ MV MAQ FS RYPL+DGQGN+G+ D AAMRY Sbjct: 61 SKSARSVGEVMGKYHPHGDQALYDTMVRMAQDFSLRYPLIDGQGNFGSIDG-DPPAAMRY 119 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TESRL + S+ +L ++ + T D PNFD T EP +LPARLPN+LLNG+ GIAVGMAT I Sbjct: 120 TESRLDRLSQHMLDDINKDTIDMEPNFDDTETEPTVLPARLPNLLLNGSDGIAVGMATKI 179 Query: 181 PPHNLREVAQAAIALIDQ-------------PKTTLDQLLDIVQGPDYPTEAEIITSRAE 227 PPHNL EVA A +++ PK + ++ ++GPD+PT A I Sbjct: 180 PPHNLNEVAAAIKFHVEKVVEQNRKIGLDNPPKIDASEYMEYLKGPDFPTGATI-HGVDG 238 Query: 228 IRKIYENGRGSVRMRAVWKKED----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVD 283 I +Y G G ++R+ + ++ +V+ ++P+QV A +L+ IA +R + + Sbjct: 239 ILDMYRTGNGRFQIRSDVEVQEDSRGKRLVVHSIPYQVKKAGMLQGIAELVRKDIIKGIR 298 Query: 284 DLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNL 343 D+RDES E ++ + ++ D V+N L+ ++ L++SY N+ M L+G P +L Sbjct: 299 DIRDESSKEGIRVVIEIKQN--ADPHAVLNQLYQSSRLQESYSANM-MGILNGEPVQLDL 355 Query: 344 LEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED------ 397 IL ++ R V RR + +K R HIL GLL A + E+IE+ R+ D Sbjct: 356 RTILHTYVRHRESVVERRTQFEFDKAEARAHILHGLLRAQKRMGEIIEVGRSSDSRDQFE 415 Query: 398 -----EPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILA 452 + K + RF ++ QA+AI E +L L KL ++ E +L+ Q IL Sbjct: 416 QYLRGDEKYPKIRRFDFSDKQAKAIAERRLYQLTKLNVQEVADELKKLKGAIKDYQNILG 475 Query: 453 SERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS 512 S + N++ EL +GD+RRS + +M D++ + + I L++ ++R Sbjct: 476 SRIRRLNIIISELDEVVDRHGDERRSRIDPMP--LSMDREDLVAEQAIVISLTRDNYIRH 533 Query: 513 AKGHDIDAPGLN--------YKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR 564 K D+ V S ++ GR Y + PSA Sbjct: 534 LPVESFRLQNRGGKGLKGVVTKEEDAPSKIVTCFSKDRLLIFTDMGRVYGLRAWETPSAS 593 Query: 565 --GQGEPLTGKLT-LPPGATVDHMLME-------SDDQKLLMASDAGYGFVCTFNDLVAR 614 G+G + LT + V +L + L+ A+ G ++ V Sbjct: 594 RYGRGSHIRNLLTRIRDDEKVISILPMSRSLIENPEGHYLMFATANGRIKKSRLSEYVKI 653 Query: 615 NRAGKALITLP--ENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD------------- 659 NR GK + E ++ D +D ++ ++ G F + Sbjct: 654 NRNGKYALRFAGGEEDALVSVRPATD-ADHVVLVSSHGNACRFMPAQKKSRVDSNSGETI 712 Query: 660 ----LPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPE-- 712 + + +G + + + G +++ K Sbjct: 713 TTHVVRVQGRVSQGVSGMKLRKGDQVIGMIVTDDF-----DTSVLTISRYGMAKRSRLGS 767 Query: 713 -------------------------ELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASS 747 + + RG RG L+ D R Sbjct: 768 GEMKPVLDDDSMPVLDEDGGLVQQRDGYR-RTNRGTRGVRTMSLRDGDH---IVSVRQVP 823 Query: 748 GDSEE 752 ++ Sbjct: 824 DLDDQ 828 Score = 72.6 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 71/457 (15%), Positives = 130/457 (28%), Gaps = 114/457 (24%) Query: 349 EWLVFRRDTVRRRLNYRLEKVL-----KRLHILEGLLVAFLNI---------------DE 388 ++ + + R Y+L K+ L L+G + + NI DE Sbjct: 431 DFSDKQAKAIAERRLYQLTKLNVQEVADELKKLKGAIKDYQNILGSRIRRLNIIISELDE 490 Query: 389 VIE----IIRNEDEPKPALMSRFGLTETQA--------EAILELKLRHLAKLEEM----- 431 V++ R+ +P P M R L QA I L + Sbjct: 491 VVDRHGDERRSRIDPMPLSMDREDLVAEQAIVISLTRDNYIRHLPVESFRLQNRGGKGLK 550 Query: 432 -KIRGEQSELEKER----DQLQGILASERKMNNLLKKELQADAQAYGDD---RR--SPLQ 481 + E+ K I ++ L + A YG R + ++ Sbjct: 551 GVVTKEEDAPSKIVTCFSKDRLLIFTDMGRVYGL-RAWETPSASRYGRGSHIRNLLTRIR 609 Query: 482 EREEAKAMSEHDML----PSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK--------AGD 529 + E+ ++ P + + G ++ ++ + N K D Sbjct: 610 DDEKVISILPMSRSLIENPEGHYLMFATANGRIKKSRLSEYVKINRNGKYALRFAGGEED 669 Query: 530 SFKAAVKGKSNQPVVFVDSTGRS-------------------YAIDPITLPSARGQGEPL 570 + + VV V S G + + + QG Sbjct: 670 ALVSVRPATDADHVVLVSSHGNACRFMPAQKKSRVDSNSGETITTHVVRVQGRVSQG--- 726 Query: 571 TGKLTLPPGATVDHMLMESD-DQKLLMASDAGYGFVCTF--------------------- 608 + L G V M++ D D +L S G Sbjct: 727 VSGMKLRKGDQVIGMIVTDDFDTSVLTISRYGMAKRSRLGSGEMKPVLDDDSMPVLDEDG 786 Query: 609 ------NDLVARNR--AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDL 660 + NR G ++L + H++ + D D L +T G M+ Sbjct: 787 GLVQQRDGYRRTNRGTRGVRTMSLRDGDHIVSVRQVPDLDDQLFMLTGTGMMIRMVSGQT 846 Query: 661 PQL-SK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQ 695 + K KG +I+ + +A+ D + + LP Sbjct: 847 KETLGKVTKGTRIMELRNADRTGYVDEIIFVARLPAD 883 >UniRef50_A4S991 Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4S991_OSTLU Length = 897 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 251/816 (30%), Positives = 400/816 (49%), Gaps = 77/816 (9%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + + L + +YL+Y+M VI+ RALP DGLKPV RRI+Y M ELGL A +K Sbjct: 33 EKIIDVELASEAKTSYLSYAMSVIVGRALPDARDGLKPVHRRILYGMHELGLRADKPHRK 92 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 AR VGDVLGKYHPHGD + YEA+V +AQ FS PLVDG GN+G+ D AAMRYTE Sbjct: 93 CARVVGDVLGKYHPHGDGSVYEALVRLAQDFSMSAPLVDGHGNFGSLD-DDPPAAMRYTE 151 Query: 123 SRLSKYSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 RL+K +E LL+++G ++ FDG+ EP++LPAR+PN+L+NG++GIAV +AT++ Sbjct: 152 CRLNKLAEKGLLADIGNECVNFTETFDGSQTEPEVLPARVPNLLINGSSGIAVAVATNMA 211 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNL E A AL P +LD+L+ ++ PD+PT ++T+++ +++IYE G+G V + Sbjct: 212 PHNLGESVDALCALAKNPDCSLDELMALLPAPDFPTGG-VVTNKSGMKEIYETGKGGVTL 270 Query: 242 RAVWKKE----------DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDH 291 R E AVVIS +P+Q + AR++EQIA + + + + D+RDESD Sbjct: 271 RGRATIERVSAARGSLDKDAVVISEIPYQTNKARLVEQIADHVNGRTIDGISDIRDESDR 330 Query: 292 ENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWL 351 + ++ + R D V+ L+A T LE + +N N+ +D +P V L +IL E++ Sbjct: 331 DGMRVVIEIKR--GYDAASVLEELYAKTKLEVKFFVN-NVALIDNKPTVMPLRQILDEFI 387 Query: 352 VFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFG 408 FR DT+ RR + L K R H++EG + + D V++IIR + L G Sbjct: 388 KFRVDTIERRTRFMLSKAQDRKHLVEGFSIVLADADGVVKIIRKSKDGPSASKKLRESHG 447 Query: 409 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 L++ QA++IL + LR L LE K+ E EL ++ QG+L+++ K+ ++L +E Sbjct: 448 LSDIQADSILAMPLRRLTGLEADKLDAELKELNEQIAHFQGLLSNKSKVIDVLVQEAMEA 507 Query: 469 AQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGL----- 523 +A+ RR+ +++ E + D P + + LS+ G+V+ + A Sbjct: 508 KEAFARPRRTSVEQIESLSGVE--DDSPPKDNILTLSERGYVKRICPKNFGAQNRGTRGK 565 Query: 524 ---NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTL-- 576 +A D A+ K + ++F GR + +P + G P T L Sbjct: 566 RMSKLRANDELSKAMHCKDSDQILFFSDRGRVQKLSAKAIPQSELNTIGVPATSLLNTFA 625 Query: 577 PPGATVDHMLMES-------DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAH 629 V ML + DDQ ++M + G V + ++ GK +ITL + Sbjct: 626 KRNQNVTAMLSTNMKQGEVADDQVVVMLTSQGKVSVASAASMLGH--KGKKVITLDKGDR 683 Query: 630 VMPPVVIEDASDMLLAIT---QAGRMLMFPVSDLPQLSKG----KGNKIINIPSAEAARG 682 + + + + + T G +L V D + G K + A Sbjct: 684 LQQVMFARTSDHLFITGTGKAGKGLILHCRVGDFRVVKSACRPISGIKTMGEKKVAEAVV 743 Query: 683 EDGL-----------------AQLYVLPPQS----------TLTIHVGKRKIKLRPEELQ 715 ED + ++P + + K K K+ Sbjct: 744 EDAGDDEDDDEDDGELLPPKTVGMAIVPGERMVSASEEFGPFILFTTKKGKGKVVAANSY 803 Query: 716 KVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 ++ G RGR G + ++ D + + + Sbjct: 804 RLLG-RGRSGVMCMKFKKGDDDALATITLVDRIGDD 838 Score = 55.3 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 41/255 (16%), Positives = 77/255 (30%), Gaps = 57/255 (22%) Query: 494 MLPSEPVTIVLSQMGWVRSAKGHD----IDAPGLNYKAGDSFKAAVKGKSNQPVVFVDST 549 + + V ++L+ G V A + GD + + +++ +F+ T Sbjct: 643 EVADDQVVVMLTSQGKVSVASAASMLGHKGKKVITLDKGDRLQQVMFARTSDH-LFITGT 701 Query: 550 G---------------RSYAIDPITLPSARGQGE-------------------------- 568 G R + + GE Sbjct: 702 GKAGKGLILHCRVGDFRVVKSACRPISGIKTMGEKKVAEAVVEDAGDDEDDDEDDGELLP 761 Query: 569 PLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL--VARNRAGKALITLPE 626 P T + + PG + E +L + G G V N + R R+G + + Sbjct: 762 PKTVGMAIVPGERMVSA-SEEFGPFILFTTKKGKGKVVAANSYRLLGRGRSGVMCMKFKK 820 Query: 627 NAH------VMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLS--KGKGNKIINIPSAE 678 + + +D +D +L T G V+DLP+ S G II + + + Sbjct: 821 GDDDALATITLVDRIGDDVTDEVLLSTTGGISNRIAVNDLPKRSDPLALGAAIIKLDATD 880 Query: 679 AARGEDGLAQLYVLP 693 A + + L Sbjct: 881 ALKSANLLPSEVASE 895 >UniRef50_A0Q573 DNA topoisomerase IV subunit A n=34 Tax=Bacteria RepID=A0Q573_FRATN Length = 742 Score = 688 bits (1777), Expect = 0.0, Method: Composition-based stats. Identities = 374/744 (50%), Positives = 517/744 (69%), Gaps = 13/744 (1%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 S + ++ EF+E AYLNYSMYVI+DRALP I DGLKPVQRRI+YAMSE+GL+ +K+ Sbjct: 4 FSSLESTRSVAEFSEQAYLNYSMYVILDRALPHISDGLKPVQRRIIYAMSEIGLSHLSKY 63 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQ FSYRYP +DGQGNWG+ DDPKSFAAMRY Sbjct: 64 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQDFSYRYPFIDGQGNWGSIDDPKSFAAMRY 123 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TESRLSKY+ LLL EL +GT DW NFDGT+ EPK+LPA++PNILLNG GIAVGM+T I Sbjct: 124 TESRLSKYAVLLLDELKKGTVDWAKNFDGTMDEPKLLPAQVPNILLNGAMGIAVGMSTYI 183 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHN+ E+ A + L+ +P +T++++L+IV+ PDYP A II+S+ EI +Y++G GS+R Sbjct: 184 PPHNITEIINACLQLLSKPNSTIEEILEIVEAPDYPGGANIISSKEEIADVYKSGNGSIR 243 Query: 241 MRAVWKKEDG-AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 +AV++ ++ VVI+ LPHQVS A V+EQIA +++ +K+ + +++DESD + P ++V+ Sbjct: 244 QQAVYEYDNHGNVVITKLPHQVSSAAVMEQIANELKQQKITWIKNIQDESDDKEPVKIVL 303 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 + + ++ ++M HL ATTDLEKS+R+N+NMIGLD RP VKNLL+IL+EWL +R+ T+R Sbjct: 304 YSATTKNNIKKIMGHLLATTDLEKSFRVNMNMIGLDNRPQVKNLLDILNEWLEYRKHTLR 363 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILE 419 RRL L+KVL RLHILEGLL+AFLNIDEVI+IIRN D+P L +RF L+E QAEAIL Sbjct: 364 RRLQTSLDKVLDRLHILEGLLIAFLNIDEVIDIIRNYDDPSGELQTRFTLSEIQAEAILN 423 Query: 420 LKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSP 479 ++LR LAK+EE++I+ EQ EL+KER+ L+G L SE K NL+KKE + +GD RRS Sbjct: 424 IRLRKLAKIEEIEIKKEQKELQKERELLEGYLNSEVKFRNLMKKEFKQILTDFGDSRRSK 483 Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKS 539 + E+A+A+ E D++PSE VTI+LS+ GW+R AKG +ID GL+YK D G S Sbjct: 484 IIVAEKAQALEEKDLMPSEKVTIILSKAGWIRCAKGENIDPAGLSYKPEDKPFLVTTGNS 543 Query: 540 NQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASD 599 N +VF G++Y++ LPSARG GE +T + L + + + L+AS+ Sbjct: 544 NIKLVFFSKLGKAYSMYVDKLPSARGYGEHITTYIPLDKQDQIISIAFVNAAGYFLIASE 603 Query: 600 AGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD 659 +G FV DL+ GK + + V + D +LAI+ GR+++ + Sbjct: 604 SGKAFVIPAEDLITNKITGKNIF---DADDVFKFMPF-DQDHKMLAISSQGRVIIRDFAS 659 Query: 660 LPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTG 719 L KGKG II + D L + + LT++ GKR I++ + ++ Sbjct: 660 FALLKKGKGKSIIRLDKK------DKLKFIELFRANQELTLNAGKRFIRIDSKNIETYYS 713 Query: 720 ERGRRG--TLMRGLQRIDRVEIDS 741 ++ G L +G ++I +++I++ Sbjct: 714 DKPSGGGVLLPQGFRKITKIDIET 737 >UniRef50_D2REE0 DNA gyrase, A subunit n=3 Tax=Archaeoglobaceae RepID=D2REE0_ARCPR Length = 738 Score = 687 bits (1773), Expect = 0.0, Method: Composition-based stats. Identities = 237/722 (32%), Positives = 394/722 (54%), Gaps = 51/722 (7%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 + E ++AYL+Y+M VI+ RALP + DGLKPVQRRI+YAM E+GL K AR VG Sbjct: 8 DIAEELKDAYLDYAMSVIVGRALPDVRDGLKPVQRRILYAMYEMGLTHDKPHVKCARVVG 67 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 VLG YHPHGD+ YEA+V MAQ FS RYPL+DGQGN+G+ D + AAMRYTE RL++ Sbjct: 68 HVLGHYHPHGDAPVYEALVRMAQDFSMRYPLIDGQGNFGSIDGDEP-AAMRYTECRLTEI 126 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 +E +L ++ + T D+ PNFD + QEP +LPA++PN+L+NG TGIAVGM T+IPPHN+REV Sbjct: 127 AEKMLEDIDKNTVDFQPNFDASKQEPVVLPAKIPNLLINGCTGIAVGMMTNIPPHNIREV 186 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248 IA I P ++++L++ ++GPD+PT I+ R I + Y G+G + +R E Sbjct: 187 CDGIIAYIKNPNISIEELMNFIKGPDFPTGGVIV-GRDGIIEAYRTGKGKIILRGKVDVE 245 Query: 249 DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308 + ++I +P+ V+ A+++E+IA ++ KL + +RDESD E ++ + D Sbjct: 246 EDKIIIREIPYMVNKAKLVEKIADLIKKDKL-LAKTVRDESDREGIRVVIELKE----DP 300 Query: 309 DQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEK 368 + L+ T L+ ++ + + + ++ P + NL E+++ ++ RR+ VRR+ Y L+K Sbjct: 301 YSALKKLYDHTPLKVTFNVVM-LALVNNEPKLLNLKELIAHYVNHRREVVRRKAEYELKK 359 Query: 369 VLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQAEAILELKLRHL 425 +R HI+EGL+ A +DEVI +I+ D K LM +TE QAEAIL+L+L+ L Sbjct: 360 AEERNHIVEGLIRAIEKLDEVINLIKQSDSTKNAKEGLMKLLRITEKQAEAILQLRLQML 419 Query: 426 AKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREE 485 +LE + E +EL+ D+L+ ILA ++++ ++ +EL+ + +GD+RR+ + ++E Sbjct: 420 TRLEYESLMKEFNELKGRIDELKSILADPKRVDEIIVEELREVKRKFGDNRRTEIIDKEI 479 Query: 486 AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVF 545 K + E + ++ G ++ + ++ SN ++ Sbjct: 480 LKEVV-------EEFGVAVTLDGQIKRFEIGKALRSNPKI--------LLRAMSNLDILL 524 Query: 546 VDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFV 605 S ++Y+I +P PL+ ++ V+ ++ D +++ S G Sbjct: 525 FSSD-KAYSIHARDIP---LDFTPLSKFIS---AEKVETGVVAKGD--VVILSKDGNIKK 575 Query: 606 CTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK 665 + RAG ++ + ED ++ T+ G ++ F S++P+ + Sbjct: 576 VRLEEFANAKRAGIIA-----GENIGFARLYEDGD--VIIATKNGYIVRFRSSEIPEYGR 628 Query: 666 -GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRR 724 KG K I + D +A + + + I K P + ++T RG Sbjct: 629 SAKGVKAITLREG------DEIAWMSIGKGD-YVLILTRDGYAKKVPIDEFRLT-NRGAM 680 Query: 725 GT 726 G Sbjct: 681 GV 682 >UniRef50_A6CC19 Type II DNA topoisomerase, A subunit n=3 Tax=Planctomycetaceae RepID=A6CC19_9PLAN Length = 802 Score = 687 bits (1772), Expect = 0.0, Method: Composition-based stats. Identities = 258/787 (32%), Positives = 419/787 (53%), Gaps = 48/787 (6%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAM-SELGLNASAKF 60 SD E + + + T YLNY+M VI RALP + DGLKPVQRRI+Y M +L L A+AK Sbjct: 21 SDRIEYVPISDVTRRRYLNYAMSVITSRALPDVRDGLKPVQRRILYVMYHDLRLMANAKP 80 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 +K A+ GD G YHPHGD++ Y+A+V +AQ F+ R PL++GQGN+G+ AA RY Sbjct: 81 RKCAKICGDTTGNYHPHGDASVYDALVRLAQDFNLRSPLINGQGNFGSIMGL-PAAAARY 139 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RL+ +E L++EL T + PN+DGT EP +LPAR PN+L+NG GIAVGMAT+I Sbjct: 140 TEARLTGIAEHLMNELRYQTVEMRPNYDGTRDEPVVLPARFPNLLVNGVHGIAVGMATNI 199 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL EV +A + LI T+ QL+ ++GPD+P I+T + + +Y+ GRG V+ Sbjct: 200 PPHNLGEVIKACVHLIHHDDATVAQLMKHIKGPDFPMGGRIVTDKRSLTAVYKEGRGPVK 259 Query: 241 MRAVWKKEDGA-------VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHEN 293 +R WK E G +V+ ++P+ V +L +I + ++KLP + D+ DE+D +N Sbjct: 260 VRGEWKPEPGTRTKGVQRLVVYSVPYGVETGSLLSEIGGIVESRKLPQLVDVADETDDKN 319 Query: 294 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDG----RPAVKNLLEILSE 349 ++V+ + + D + VM L+ T+LE+++ +N+ + D P +L E+L Sbjct: 320 GLKIVLEIKPD-ADPETVMAFLYKHTNLEQNFSVNMTCLVPDESEVLVPRRCDLKEMLQY 378 Query: 350 WLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSR 406 +L FR +VR+R Y+L+ + +R+HIL+G + F ++D+ +++IR + LM+ Sbjct: 379 FLDFRFISVRKRFEYQLQLLERRIHILKGFAIIFNDLDKALKLIRASSGKQDAAKKLMAN 438 Query: 407 FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ 466 F L E Q AILEL+L ++KLE IR E +E E E ++++ ILAS++++ +++ EL+ Sbjct: 439 FPLDEIQTMAILELQLYRISKLEINTIREELAEKEAEAEKIRKILASDKRLWKVVENELK 498 Query: 467 ADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS-----AKGHDIDAP 521 A + + R++ L EE + E +V+S+ GW++ K + Sbjct: 499 ELADEFPEKRQTKLGSSEEITEFDPQAYIVRENTNVVVSREGWIKRVGRLKTKEGTQELA 558 Query: 522 GLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGAT 581 + GDS A G + VVF S G +Y + +P + G GEPL+ + GA Sbjct: 559 KTRTREGDSVLAVAPGSTLDHVVFFSSDGVAYTLPIEQVPVSSGYGEPLSKHARMSDGAV 618 Query: 582 VDHMLMES---------------DDQKLLMASDAGYGFVCTFNDL-VARNRAGKALITLP 625 + + +L+ ++ G +F+ A +AG+ L Sbjct: 619 LVAAVTTDSRFTPEDKATKKQPLPTPHVLIVTEKGQFMRISFSLFRTASTKAGRKYCRLG 678 Query: 626 ENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGED 684 ++ V+ ++ + ++ + TQ R+L + + LS GKG K I + + G Sbjct: 679 KDDRVVYAGLV-EEAETMFIATQDARVLHCEIEEAALLSNAGKGVKGIRLEKGDQVIGVL 737 Query: 685 GLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRR 744 L + P I+ + K+ +++ RG +G + QR EI P Sbjct: 738 QLTR----PSDCLRVINTAGK--KMTFGQMKYGVTSRGGKGV--KTSQRSGFAEILYPPI 789 Query: 745 ASSGDSE 751 E Sbjct: 790 EVVDWDE 796 >UniRef50_C5CST5 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Variovorax paradoxus S110 RepID=C5CST5_VARPS Length = 798 Score = 686 bits (1771), Expect = 0.0, Method: Composition-based stats. Identities = 316/777 (40%), Positives = 460/777 (59%), Gaps = 59/777 (7%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGL------- 54 +D L L ++ + AYL Y++ V+ RALP + DG KPVQRRI+Y+MS +GL Sbjct: 14 TDGDTTLTLADYAQTAYLEYALSVVKGRALPDVSDGQKPVQRRILYSMSRMGLGFGGANG 73 Query: 55 NASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKS 114 AK KSAR VGDVLG++HPH D A Y+A+V MAQ FS RYPL DGQGN+G+ D Sbjct: 74 TVGAKPVKSARVVGDVLGRFHPHSDQAAYDALVRMAQDFSQRYPLADGQGNFGSRDG-DG 132 Query: 115 FAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAV 174 AAMRYTE+RL++ + LLL E+ +GT D++PN+DG+ +EP++LPARLP LLNG +GIAV Sbjct: 133 AAAMRYTEARLARITSLLLDEIDEGTVDFIPNYDGSTEEPRLLPARLPFTLLNGASGIAV 192 Query: 175 GMATDIPPHNLREVAQAAIALID-QPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYE 233 G+AT+IP HNLRE+A A +ALI K + ++LL IV GPDYP A+II+ A+I Y Sbjct: 193 GLATEIPSHNLREIADACVALIKSNGKLSDEELLQIVPGPDYPGGAQIISGPADIADAYR 252 Query: 234 NGRGSVRMRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQ----MRNKK------ 278 GRGS+++RA WK ED +V++ LP VS +VLE+I ++ K Sbjct: 253 TGRGSLKVRARWKIEDLARGQWQLVVNELPPGVSTQKVLEEIEEITNPKVKAGKKALSAD 312 Query: 279 --------LPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLN 330 L ++D +RDES + RLV P+++R+ D+ + L A T LE S INL Sbjct: 313 QTQLKAAMLSVLDVVRDESSKDAAVRLVFEPKTSRISQDEFITTLLAQTSLETSSPINLT 372 Query: 331 MIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVI 390 M+G+DG+P K+L ++L+EW+ FR TV +R +RL KV+ R+HILEG + LNIDEVI Sbjct: 373 MVGIDGKPTQKSLRQMLNEWIAFREVTVEKRSRFRLNKVMDRIHILEGRQLVLLNIDEVI 432 Query: 391 EIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450 IIR ++PK AL++RF L+E QAE ILE++LR LA+LE +KI+ + EL E+ +L+ I Sbjct: 433 AIIRAAEDPKAALIARFNLSEVQAEDILEIRLRQLARLEGIKIQQQLDELRTEQKKLEDI 492 Query: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510 L S + LL KE++ADA+ + D RR+ +Q + A A + EPVT+++SQ GWV Sbjct: 493 LGSPAALRRLLVKEIEADAKTFEDPRRTLIQAEKRAVA---EVKVVDEPVTVIVSQKGWV 549 Query: 511 RSAK--------GHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDS----TGRSYAIDPI 558 R+ K G+ AP ++K+GD+ A + +S ++ S + R Y + Sbjct: 550 RAQKGWASEKAAGNGGTAPEYSFKSGDTLYGAFECRSVDTLLVFGSAKDKSVRVYTVPVA 609 Query: 559 TLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAG 618 +LP ARG G+P+T + L G V H +L+A+ GYGF+ T ++++R R G Sbjct: 610 SLPGARGDGQPVTTLIELDAGTHVTHFFAGPVGASVLLANTGGYGFIATVENMMSRQRGG 669 Query: 619 KALITLPENAHVMPPVVIEDAS--------DMLLAITQAGRMLMFPVSDLPQLSK-GKGN 669 KA I + E + P ++ AS + + GR+L F +++L L K G+G Sbjct: 670 KAFIDVGEGEQLCRPSLVGGASGAEPMPAATHVACASTGGRILTFDIAELKSLPKGGRGL 729 Query: 670 KIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGT 726 +I++ + + G + + +R L L G R R+G Sbjct: 730 TLIDLDAKDTLAGAAAYTRSVKIEGIGR---GGKERDETLEIRTLNNARGSRARKGK 783 >UniRef50_D1C5K4 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C5K4_SPHTD Length = 813 Score = 686 bits (1771), Expect = 0.0, Method: Composition-based stats. Identities = 237/770 (30%), Positives = 384/770 (49%), Gaps = 35/770 (4%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + E E+A++ Y++ V+ RALP DGLKPVQRRI++ M E G ++ K Sbjct: 12 ETIETEEFSTLFEDAFVQYALAVVTSRALPDARDGLKPVQRRILWCMYENGHRSNRPTVK 71 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SA VGDVL YHPHGDSA Y+A V MAQ F+ RYPL++GQGN+G+ D + AA RYTE Sbjct: 72 SASVVGDVLKSYHPHGDSAVYDAAVRMAQDFTMRYPLIEGQGNFGSIDG-DAAAAYRYTE 130 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTL--QEPKMLPARLPNILLNGTTGIAVGMATDI 180 RLS ELLL ++ Q T + + +P LPAR+P I N ++GIAVG++TDI Sbjct: 131 MRLSPIGELLLRDIEQETVPFEQTYLQMPNVVQPVYLPARIPPI-CNPSSGIAVGLSTDI 189 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNLRE +AAIAL+D P+ T+D+L+ I+ GPD+PT II IR E+G+G + Sbjct: 190 PPHNLREAIRAAIALLDNPEMTVDELMKILPGPDFPTGGRII-GTDGIRAYLESGKGRLV 248 Query: 241 MRAVWKKED----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 +R + E+ +V++ +P +S +R++ I + + K+ V D+R+ESD E TR Sbjct: 249 IRGEVRLEEELRQRNLVVTEIPP-ISRSRLVRSIINAVNDGKVTGVTDVRNESDDEKGTR 307 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLD-----GRPAVKNLLEILSEWL 351 +V+ + + V+N L+ TDL+ + +N+ + D +P +L++L W Sbjct: 308 IVVELERS-ATPEVVLNQLYRFTDLQTAVNVNMVFLFGDPGQPARQPRRTGMLDLLRYWN 366 Query: 352 VFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFG 408 + D + RR Y+L K +RLH++EGL++ + DE++ I + + K + ++ Sbjct: 367 RHQIDVITRRAEYQLRKAQERLHVVEGLIIGAAHADEIVRIFQKARDRNVAKEKIKVKYN 426 Query: 409 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 LT+ QA+ I + L + +L+ K E+ EL K +LQ +LASE K LLK+EL A Sbjct: 427 LTDIQADVIANMTLAQVTRLDAAKYAEEKKELTKRIKELQALLASEAKKVALLKEELTAI 486 Query: 469 AQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI-DAPGLNYKA 527 AQ +GDDRR+ + + + S ++ P+ IV SQ G V++ + A Sbjct: 487 AQEHGDDRRTRIDREGQEEIASVASLIEERPILIVASQSGRVKALPENAFKRARAGRTAR 546 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHM 585 G+ A V + ++ + GR Y +P+ GEP L P + + Sbjct: 547 GEGLAAIVPASTLDYLLVLTRGGRVYLSRGHEVPAGTRASSGEPAQKVFGLKPDEALATI 606 Query: 586 LMES---DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM 642 L + +D+ ++ + G + + AG + L + V+ + E + Sbjct: 607 LPVNELTEDRYVVWFTANGKVKKTSLAEYRTITSAGLNDLRLLGDDRVVAATLSESGGEY 666 Query: 643 LLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 L+ + G+ L F ++ + G+G I + + + + + Sbjct: 667 LVIAS-NGQALRFADDEVRATGRDGQGVNAIALKAGAEVVTALAIPP----KSDGDVLVV 721 Query: 702 VGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 + K + R G L + DR + + D + Sbjct: 722 TAQGMGKRTALKDFPAR-RRATAGVAAITLAKGDR---IAGAALVTPDDD 767 Score = 95.0 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 73/217 (33%), Gaps = 11/217 (5%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKA 533 L+ E + + L + + + G V+ + L D A Sbjct: 597 LKPDEALATILPVNELTEDRYVVWFTANGKVKKTSLAEYRTITSAGLNDLRLLGDDRVVA 656 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDH-MLMESDDQ 592 A +S + + S G++ + + G+ + V + D Sbjct: 657 ATLSESGGEYLVIASNGQALRFADDEVRATGRDGQGVNAIALKAGAEVVTALAIPPKSDG 716 Query: 593 KLLMASDAGYGFVCTFNDLVARNRA--GKALITLPENAHVMPPVVIEDASDMLLAITQAG 650 +L+ + G G D AR RA G A ITL + + ++ D ++ G Sbjct: 717 DVLVVTAQGMGKRTALKDFPARRRATAGVAAITLAKGDRIAGAALVT-PDDDVVLGAAGG 775 Query: 651 RMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGEDGL 686 + L V DL + + KG++++ + + + Sbjct: 776 QALQVTVKDLRRQGRATKGSRLLEVAKNDHVATIARV 812 >UniRef50_C8NZH8 DNA topoisomerase IV, A subunit n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZH8_ERYRH Length = 822 Score = 685 bits (1769), Expect = 0.0, Method: Composition-based stats. Identities = 229/753 (30%), Positives = 390/753 (51%), Gaps = 33/753 (4%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 D +L + + + YS Y+I +RALP + DGLKPVQRRI+YAM ++K Sbjct: 4 DSLIKLPIEDIVGERFGRYSKYIIQERALPDVRDGLKPVQRRILYAMFHDKNFYDKPYRK 63 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SA+TVG V+G YHPHGDS+ YEAMV M+Q + PL+D QGN G+ D AAMRYTE Sbjct: 64 SAKTVGLVIGNYHPHGDSSVYEAMVRMSQSWKMNMPLIDMQGNNGSID-DDPAAAMRYTE 122 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +R+SK S+ LL + + +V NFD EP +LPAR PN+L+NG+TGIA G AT+IPP Sbjct: 123 ARISKLSQKLLENIDEEVVPFVLNFDDMTTEPSVLPARYPNLLVNGSTGIAAGYATNIPP 182 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 NL E+ A+I + P ++++++ +VQGPD+PT A II + I I G+G + +R Sbjct: 183 FNLNEIMDASIYRLHNPNCSVEEIMTMVQGPDFPTGA-IIQGQEGIEDIIRKGKGRIVVR 241 Query: 243 AVWKKEDG----AVVISALPHQVSGARVLEQIAAQMRNKKLPM---VDDLRDESDHENPT 295 A + + +VI+ LP++V + V+ +I K V D+RDESD Sbjct: 242 AKAEIVENKSMKQIVITELPYEVIKSNVVRKIDELRFTKASEGFGDVMDVRDESDRTGLR 301 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 ++ R +++ ++N + T+L+ Y N+ I +D RP V LLE+L +L FR+ Sbjct: 302 IVIDCKR--DANVESILNLFYKYTELQVYYNANMVAI-VDQRPKVCGLLEVLDAYLKFRQ 358 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTET 412 + V R YR E+ KRLHILEGL+ A N+DE+I +IR N E + +M+ FG TE Sbjct: 359 EVVLNRSKYRYEQKEKRLHILEGLMKATSNLDEIIAVIRSSNNRSESRNNIMAEFGFTEA 418 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QA AI++L+L L+ + +R E ++L E + L ++ + +NN++ KE +A+ Sbjct: 419 QATAIVDLQLYRLSSTDINALRDEFAKLANELEYLDLVINNIDMLNNMIVKEFMEIKEAF 478 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG---LNYKAGD 529 RRS ++ + ++ +E V + +S+ G+++ + + D Sbjct: 479 DTPRRSVIEAEISELEVDHLSLITNEAVMVTVSRDGYLKKVSLRSYGSSQKDVIALMDED 538 Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHML- 586 + + ++ +VFV S GR I + AR + G + + P + + Sbjct: 539 MPVFSSEVETTDYLVFVTSRGRYGMILVHEIDEARWRDTGSHINQYMKCDPNEKIISVFT 598 Query: 587 --MESDDQKLLMASDAGYGFVCTFNDL-VARNRAGKALITLPENAHVMPPVVIEDASDML 643 + ++ ++ +G ++L V R ++ L ++ ++ V I + L Sbjct: 599 LKSFDTYRFIVTSTASGMIKKTAISELEVKRTNRLYDVMKLGKHDELVGAV-ITSNDEHL 657 Query: 644 LAITQAGRMLMFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHV 702 L +++ G+ + ++++ + + KG + + + GL+ +S + Sbjct: 658 LLVSKEGQCMRLDLAEINPIGLRAKGVIGMKLKLNDRVVSTMGLSD------ESEVVFVS 711 Query: 703 GKRKIKLRPEELQKVTGERGRRGTLMRGLQRID 735 + ++K + + R +GT + + + + Sbjct: 712 DRFQMKRIKAQDIAIN-NRATQGTSIVKMVKSN 743 >UniRef50_B5IIX4 DNA gyrase/topoisomerase IV, A subunit domain protein n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IIX4_9CHRO Length = 834 Score = 685 bits (1769), Expect = 0.0, Method: Composition-based stats. Identities = 251/793 (31%), Positives = 392/793 (49%), Gaps = 67/793 (8%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 + +ALH+ + +YL Y+M VI+ RALP DGLKPVQRRI++AM ELGL ++ Sbjct: 17 DGRIQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPYR 76 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K AR VGDVLGKYHPHGD A Y+A+V + Q F+ R+PL+DG GN+G+ D AAMRYT Sbjct: 77 KCARVVGDVLGKYHPHGDQAVYDALVRLVQTFASRHPLLDGHGNFGSVD-DDPPAAMRYT 135 Query: 122 ESRLSKYSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 E+RL+ + LL E+G T D+ PNFDG+ QEP +LPA+LP +LLNG TGIAVGMAT+I Sbjct: 136 ETRLAPIAHEGLLDEIGNDTVDFAPNFDGSQQEPTVLPAQLPFLLLNGCTGIAVGMATNI 195 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL EV A IALI +P + ++L +V GPD+PT E++ S + +R Y GRGS+ Sbjct: 196 PPHNLGEVVDAMIALIRKPDLSDEKLFALVPGPDFPTGGEVLLS-SGVRDTYRLGRGSIP 254 Query: 241 MRAVWKKED----------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESD 290 MR V E+ AVVI+ LP+Q+S A +E++A Q+ + K+ + D+RDESD Sbjct: 255 MRGVAHIEEVQPGKGRHRRSAVVITELPYQLSKAGWIEKLAEQVNDGKIGGIADIRDESD 314 Query: 291 HENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEW 350 E +V + + D V+ L T L+ ++ + + ++G+P +L +L E+ Sbjct: 315 REGMRVVVEL--RRDANADTVLAELQRRTALQSNFGA-ILLALVNGQPVQLSLRRLLQEF 371 Query: 351 LVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEII---RNEDEPKPALMSRF 407 L +R T+ RR + L + RL ++EGL+ A + EVI +I + + +L R Sbjct: 372 LDYRELTLIRRTRHALRRCEDRLEVVEGLIKALDALQEVIAMITAAADAASARASLQVRL 431 Query: 408 GLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQA 467 L+E QA+A+L + LR L LE+ +R E EL ER +L+ +L + + E +A Sbjct: 432 DLSERQADAVLAMPLRRLTGLEQESLRQESEELRTERTRLRHLLDDRDSLLEAMVAEFRA 491 Query: 468 DAQAYGDDRRSPLQERE-----------------------EAKAMSEHDMLPSEPVTIVL 504 + YG RR+ L E EA A ++ ++ ++ Sbjct: 492 LKKRYGTPRRTRLVEGGDDLVAQRAAAARPNAELQRQQALEALASDSRVLIQADRAVKIV 551 Query: 505 SQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR 564 + R A + + S V+ + GR + A Sbjct: 552 TPQVLGRLHLEEPAPLGEHPAPA----QLLLTVASQPQVLAFTTDGRV---AVLRWEFAG 604 Query: 565 GQGEPLTGKLTLP-PGATVDHMLMESDDQ----KLLMASDAGYGFVCTFNDLVARNRAGK 619 Q PL L GA+V +L + + + S G +DL + Sbjct: 605 QQPGPLERFLPDSLEGASVMQVLPLQEGSDPHLSIGLLSSDGRFKRLPLDDLQDLSGRAA 664 Query: 620 ALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF--PVSDLPQLSKGK-GNKIINIPS 676 ++ L E + V ++ L+ + GRML +P + + G ++ + Sbjct: 665 TVLKLKEGVTLQRVVPCRSGAE-LVVASSTGRMLRLEANEEQVPLMGRTAQGPVLMRL-- 721 Query: 677 AEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDR 736 ++ + +P ++ + + ++K E + ERG G + G++ R Sbjct: 722 ----LPDEQIVGAACVPASGSVLLASRQGQVKKLAVESLR-RCERGDLG--LIGIRFSQR 774 Query: 737 VEIDSPRRASSGD 749 + + Sbjct: 775 GDALVALSSGEHP 787 >UniRef50_A3VFM2 DNA topoisomerase IV, A subunit n=11 Tax=Alphaproteobacteria RepID=A3VFM2_9RHOB Length = 856 Score = 685 bits (1769), Expect = 0.0, Method: Composition-based stats. Identities = 267/806 (33%), Positives = 428/806 (53%), Gaps = 88/806 (10%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 L + YL Y++ IM+RALP DGLKPV RRI++AM EL LN+ +F+KS++ G Sbjct: 57 PLRRAIGDRYLTYALSTIMNRALPDARDGLKPVHRRILFAMRELRLNSGGRFRKSSKISG 116 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 DV+G YHPHGD+A Y+AM +AQ F+ RYPLVDGQGN+G D A+ RYTE+R++ Sbjct: 117 DVMGNYHPHGDAAIYDAMARLAQDFNVRYPLVDGQGNFGNIDGDNPAAS-RYTEARMTIV 175 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 +E LL L + D+ N+DGTL+EP +LPA P++L NG GIAVGMAT+IPPHN+ E+ Sbjct: 176 AEALLEGLDEDAVDFRENYDGTLREPVVLPATFPHLLANGAAGIAVGMATNIPPHNISEL 235 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248 A + LI P D LL+ + GPD+PT I+ R I + Y GRGS+R+R+ W+ E Sbjct: 236 VDACLHLIKTPDARDDTLLNYIPGPDFPTGGVIVEPRENIAEAYRTGRGSIRLRSKWEVE 295 Query: 249 D-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 D ++++ +P+QV ++++E++A ++ KK+P++ D+RDES + R+V+ P++ Sbjct: 296 DLGRGQWQIIVTEIPYQVQKSKLIEKLAEVIQTKKVPLLADVRDESADD--VRIVLEPKT 353 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLN 363 V+ + +M LF +DLE + +N+N++ P V +L E+L +L FRR+ + RR Sbjct: 354 RNVEPEMLMGLLFRNSDLEVRFSLNMNVLIDGLTPKVCSLKEVLRAFLDFRREVLIRRSQ 413 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELK-- 421 +R+EK+ RL +LEG ++AFLN+D VI+IIR +D+PK ALM + + I Sbjct: 414 HRMEKIDHRLEVLEGFIIAFLNLDRVIDIIRYDDDPKAALMYE-DWSRPHQDTIARATNE 472 Query: 422 ---LRHLAKLEEMKIRGEQSEL-------------------------------------- 440 + LA ++ + + E Sbjct: 473 HDYVSPLAGIDVASLELREDETATAPEIITDNTGSGATPKRFVGRSEGLSDVQADAILNM 532 Query: 441 ----EKERDQLQGI----------------LASERKMNNLLKKELQADAQAYGDD----- 475 + ++L+ I L SE + EL+ + +G D Sbjct: 533 RLRSLRRLEELELIRERDALMEERAGLEDLLDSEDLQWGRIGDELKDAKKKFGKDYVAGA 592 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 RR+ E E + M+ EPVTIV SQMGW+R+ GH +K GD + A Sbjct: 593 RRTQFAEAAEVPDVPLEAMIEREPVTIVCSQMGWIRAMSGHVDLTRDFKFKDGDGPRFAF 652 Query: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLL 595 ++ ++ + GR Y + LP RG GEPL + LP + M + + D+KL+ Sbjct: 653 HAETTDKIIVFAANGRFYTLGASNLPGGRGMGEPLRLMVDLPNDVEIIDMFVHAPDRKLI 712 Query: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPEN-AHVMPPVVIEDASDMLLAITQAGRMLM 654 +AS G GF+ D+VA+ + GK ++ + ++ A ++ PV D + +++ ++L+ Sbjct: 713 VASKGGNGFIVPEADVVAQTKNGKQVLNVSDDVAKLVKPVA----GDHVAVVSENRKLLV 768 Query: 655 FPVSDLPQLSKGKGNKIINIPSAEAARG----EDGLAQLYVLPPQSTLTIHVGKRKIKLR 710 FP+++LP++ +GKG ++ SA +G + GL+ L + L+ Sbjct: 769 FPIAELPEMGRGKGVRLQKYGSARGRQGTLDLDGGLSDLTTFDLATGLSWA-ATGDRTRT 827 Query: 711 PEELQKVTGERGRRGTLMR-GLQRID 735 ++ G+R G + G + + Sbjct: 828 EVDMSPWIGKRAGVGKMPPHGFPKSN 853 >UniRef50_Q7UU73 DNA gyrase subunit A n=1 Tax=Rhodopirellula baltica RepID=Q7UU73_RHOBA Length = 825 Score = 683 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 262/794 (32%), Positives = 403/794 (50%), Gaps = 73/794 (9%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 + + L ++ YLNYS+ VI RALP + DGLKPVQRR++Y MS L L++SAK K A Sbjct: 31 IQNIPLRFAAQDRYLNYSLSVITSRALPDVRDGLKPVQRRVLYTMSLLRLDSSAKHSKCA 90 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESR 124 + VGDV+GKYHPHGDS+ YEA+V M+Q FS R P++DG GN+G+ D + AAMRYTE R Sbjct: 91 KVVGDVMGKYHPHGDSSIYEALVRMSQSFSLRMPMIDGSGNFGSIDG-DNAAAMRYTECR 149 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 ++ + +L++L T + PN+DGT +EP +LP+R+P++L+NG TGIAVGMAT+IPPHN Sbjct: 150 MTPIASEVLADLSSRTVAFKPNYDGTREEPVVLPSRVPSLLVNGATGIAVGMATNIPPHN 209 Query: 185 LREVAQAAIALIDQPKTTLDQLLDI--VQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 L+EV A + L+ P+ QL+ +QGPD+PT I ++ E+R+IY G G++++R Sbjct: 210 LKEVCNALLKLLANPEIKDYQLVAGDAIQGPDFPTGGHITNTKEELREIYATGTGTIKLR 269 Query: 243 AVWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 V + + + I+ +P V+ A ++E+IA + + KLP+V ++RD S + Sbjct: 270 GVAEVAEKSRTGDTLRITEIPFGVNKAAMVERIAELVYSSKLPLVQEVRDLSTED---IR 326 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLD-----GRPAVKNLLEILSEWLV 352 V + D D+V+ +L+ T L+ ++ +NL + G P L EIL +L Sbjct: 327 VDLLLKKNADADKVLAYLYKHTPLQTNFNVNLTCLTPTENPEVGAPKRLGLKEILWYFLH 386 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRF-- 407 FR D + RL L + KR+HILEGL + F +DE+I+IIR+ + + +M RF Sbjct: 387 FRLDVLTARLTNELRALEKRIHILEGLALIFDALDEIIKIIRSSEGKADAAEKIMKRFPV 446 Query: 408 ----------------GLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451 GL Q +AILELKL LA+LE + E + K D++ +L Sbjct: 447 KELTPAQARRKTRASNGLDAEQTDAILELKLYRLARLEINVVLDELKKKRKRVDEINKLL 506 Query: 452 ASERK------MNNLLKKELQADAQAYGD----DRRSPLQEREEAKAMSEHDMLPSEPVT 501 A +R ++K+ELQ+ YG+ RRS + E +E D + +E Sbjct: 507 ADDRDDYTSSGRWAIIKEELQSLISDYGNTPAGRRRSTIVVPTEEVEYTEEDFIVAEDCH 566 Query: 502 IVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP 561 ++++ GWV+ K D + GD+ A V G + + F S G Y I +P Sbjct: 567 VMVTVDGWVKRQK-QIADPSKSRLRQGDAVLACVAGNTRTTLAFFSSLGVCYTARMIDIP 625 Query: 562 SARGQGEPLTGKLTLPPGATVDHMLMES----------------DDQKLLMASDAGYGFV 605 ++ G GEP+ G + L L AS GY Sbjct: 626 ASTGFGEPIQKLFKFKDGERIIAALSMDPRILGDISEDPKGNYYPATHALAASTDGYALR 685 Query: 606 CTFNDL-VARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQL- 663 RAG+ + A ++ V I ++ +LA++ R ++ P ++ L Sbjct: 686 FGLQPFAEPSTRAGRKFARVKPGASIVDVVPIA-GTETVLAVSADARAMVCPADEINYLS 744 Query: 664 SKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGR 723 GKG ++ + + D L L V R K + T RG Sbjct: 745 GAGKGVLLLKLAA------SDKLLGFKPSTGDRDLLNVVTNRGAKKTVSTAKYRTTSRGG 798 Query: 724 RGTLMRGLQRIDRV 737 RG ++ +I + Sbjct: 799 RGIELQKNGKIAEI 812 >UniRef50_O67108 DNA gyrase subunit A n=2 Tax=Aquificaceae RepID=GYRA_AQUAE Length = 744 Score = 681 bits (1757), Expect = 0.0, Method: Composition-based stats. Identities = 250/741 (33%), Positives = 406/741 (54%), Gaps = 46/741 (6%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + + + E + AY++Y+M VI+ RA+P + DGLKPVQRRI+Y+M E+GL FKK Sbjct: 5 ENLVEIPIEEEVKQAYIDYAMSVIVGRAIPDVRDGLKPVQRRILYSMYEMGLLPDKPFKK 64 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SAR VG+ LGKYHPHGD A YEA+V MAQ F+ RYPL+ GQGN+G+ D A MRYTE Sbjct: 65 SARIVGETLGKYHPHGDQAVYEALVRMAQDFTMRYPLIIGQGNFGSIDG-DPAAQMRYTE 123 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 ++LS + +L+++ + T D+ PNFD TL EP++LP++ PN+L NGT+GIAVG+AT IPP Sbjct: 124 AKLSPLAVEMLTDIDKDTVDFQPNFDDTLMEPEVLPSKFPNLLCNGTSGIAVGLATSIPP 183 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HNL EV A + L P+ ++D++++I++GPD+PT I A++++IY+ GRG ++++ Sbjct: 184 HNLTEVGNALVKLAQNPQISVDEIMEILKGPDFPTGGVIENF-AQVKEIYKTGRGIIKVK 242 Query: 243 AVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 E +VI+ +P+QV+ A ++++IA +RN K+ + D+RDE+D E + Sbjct: 243 GKAHVEKVQGGRERIVITEIPYQVNKAELIKKIADNVRNGKIKEISDIRDETDKEGIRIV 302 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 V + R ++V+ L+ T LEK + +NL ++ +D P + ++ +L E++ R + Sbjct: 303 VELKR--DAKGEEVLKKLYKYTPLEKGFPVNL-VVLIDKEPKLVDIKTLLREFIKHRLEV 359 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA---LMSRFGLTETQA 414 + RR Y L+KV RLHI+EGLL A ID++IE IR + A LM FGL+E QA Sbjct: 360 ILRRSKYFLKKVQDRLHIVEGLLKAINFIDDIIERIRRSKDASEARNYLMEEFGLSEKQA 419 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 +A+L+L+L+ L LE K+ E+ EL ++ + + ++ASE + + +E + + YGD Sbjct: 420 QAVLDLRLQRLTSLEREKLLEEEKELREKIEYYKKLVASEGERIKVFIEETEELVKKYGD 479 Query: 475 DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAA 534 RR+ + +E K S +T+ + Q G + + ++ Sbjct: 480 KRRTFIGGVKEVKEGS---------ITVAVLQDGSIIPVEELPLEKA--------PVVNI 522 Query: 535 VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKL 594 ++ + + V + GR Y I S QG ++ L V + E +L Sbjct: 523 LRVPFTEGLFLVSNRGRVYWIAG----SQALQGSKVS--LKSREEKIVGAFIREKFGNRL 576 Query: 595 LMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLM 654 L+A+ GY + + G +I L E V+ D + +L T+ GR+ Sbjct: 577 LLATKKGYVKKIPLAEFEYK-AQGMPIIKLTEGDEVVSIASSVDET-HILLFTKKGRVAR 634 Query: 655 FPVSDLPQ-LSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEE 713 F V ++P +G + I + + + L + + L + K ++K E Sbjct: 635 FSVREVPPSTPGARGVQGIKLEKNDET------SGLRIWNGEPYLLVITAKGRVKKISHE 688 Query: 714 LQKVTGERGRRGTLMRGLQRI 734 RG +GT + G + Sbjct: 689 EIP-KTNRGVKGTEVSGTKDT 708 >UniRef50_Q2SS33 DNA topoisomerase IV, A subunit n=5 Tax=Mollicutes RepID=Q2SS33_MYCCT Length = 899 Score = 680 bits (1756), Expect = 0.0, Method: Composition-based stats. Identities = 227/756 (30%), Positives = 398/756 (52%), Gaps = 29/756 (3%) Query: 1 MSDMAERL--ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASA 58 MSD +E + L E N + Y+ Y+I +RALP + DGLKPVQRRI+YAM++L L Sbjct: 1 MSDKSEIILYPLEELLGNRFSRYAKYIIQERALPDVRDGLKPVQRRILYAMNQLNLTFDK 60 Query: 59 KFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAM 118 +KKSAR VG+V+GKYHPHGDS+ Y+AMV M+Q + PLVD QGN G+ D S AAM Sbjct: 61 PYKKSARVVGEVIGKYHPHGDSSIYDAMVRMSQWWKVNIPLVDMQGNNGSIDG-DSAAAM 119 Query: 119 RYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMAT 178 RYTE+RL+K S LLL +L + T + PNFD + EP +LP+ PNIL+NG TGIA G AT Sbjct: 120 RYTEARLTKISNLLLEDLEKDTVIFSPNFDDSETEPTVLPSYFPNILVNGATGIAAGYAT 179 Query: 179 DIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGS 238 ++PPHNL E+ A I +I P T+DQ+L IV+GPD+PT A II ++ IR+ + G+G Sbjct: 180 NMPPHNLSEIIDATIDIIKNPNITIDQILKIVKGPDFPTGA-IIQNKQGIREAFLTGKGK 238 Query: 239 VRMRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 V + + W +E +VI +P++V ++++I + N + ++RDE+D + ++ Sbjct: 239 VIISSKWHQEKNNIVIDEIPYEVVKQDLVKKIGDVIDNNPNLGIKEIRDETDRKGLRIVI 298 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + +++ V LF +T L SY N N+I +D +P L++I+ ++ ++ Sbjct: 299 ELNEK--ANLETVRKFLFKSTWLSVSYNYN-NIIIVDKQPKQLGLIDIIKAYISHYKEVF 355 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQAE 415 +R + L K RL I++GL+ A +DEVI++IR + + L+ F T Q+ Sbjct: 356 IKRTEFNLNKTNLRLEIVKGLIKALSILDEVIKVIRKSENRIDAINNLVISFNFTTNQST 415 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 AI++++L L + K+ E++EL + + Q IL ++N + L+ + +G Sbjct: 416 AIVDMRLYRLTSTDVNKLLLEKTELIDKIKKYQEILNDNLVLDNEIISRLEEVKKQFGIK 475 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGL---NYKAGDSFK 532 R+S +++ E + + +++ + + + +S+ G+++ + ++ L K D + Sbjct: 476 RKSQVEDLVEDLDVDQKEVIIEKEINLWISKDGYIKVIDNNILNKNELSSFGKKPNDMWI 535 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLMESD 590 + + ++ + Y+I + +++ + G + T P T+ + L+ + Sbjct: 536 SQGVCSNLDHLILISDQANYYSIPLYKISTSKWKEQGVHINSVATTQPNETIINALVIKE 595 Query: 591 ----DQKLLMASDAGYGFVCTFNDLV-ARNRAGKALITLPENAHVMPPVVIEDASDMLLA 645 Q LL+ + G +DL ++ + ++ ++ +I + Sbjct: 596 FINSTQHLLLVTKNGLIKRTQISDLETKIFNKSFKIMKISDDDSLVYADLISSKTSYCCI 655 Query: 646 ITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGK 704 +T+ G + + + D+P S KG K N+ +D + L + I K Sbjct: 656 VTKNGYAVRYNIEDIPIQSTISKGVKAANLK-------DDQIISALSLQTNKDIIIFTNK 708 Query: 705 RKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEID 740 K + L + R ++G + ++ ++ E+ Sbjct: 709 NNYKKIDQNLIPIYI-RPKKGIRILVEKKKNKEEVI 743 >UniRef50_D1BTH4 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Actinomycetales RepID=D1BTH4_XYLCX Length = 855 Score = 680 bits (1756), Expect = 0.0, Method: Composition-based stats. Identities = 262/823 (31%), Positives = 409/823 (49%), Gaps = 84/823 (10%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + + + E+++L Y+ VI RALP DGLKPVQRRI+Y M+++GL + Sbjct: 13 FDEKIVDIDVASEMESSFLEYAYSVIYARALPDARDGLKPVQRRILYMMADMGLRPDRPY 72 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KS+R +G+V+GK HPHGD A Y+A+V +AQ FS R PLVDG GN+G+ DD AA RY Sbjct: 73 VKSSRVIGEVMGKLHPHGDQAIYDALVRLAQDFSLRLPLVDGHGNFGSLDDGP--AAPRY 130 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RL+ S + + L + D+VPN+D L +P++LP+ +PN+L+NG +GIAVGMAT++ Sbjct: 131 TEARLAPPSTAMTAGLDEDVVDFVPNYDNKLTQPEVLPSAIPNLLVNGASGIAVGMATNM 190 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PHNL EV A L+ P TL+ ++ V GPD PT +I+ IR Y +GRG+ R Sbjct: 191 APHNLVEVVAAGQHLLANPAATLEDVMRFVPGPDLPTGGKIV-GLDGIRDAYRSGRGTFR 249 Query: 241 MRAVWKKEDGA-----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 RA + E+ + I+ LP+ V +V+E+IA ++ KK+ V +++D +D + Sbjct: 250 TRATARIENITPRRRGITITELPYLVGPEKVVEKIADGVKAKKIQGVANVQDLTDRTHGM 309 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 RLV+ ++ D + V+ L+ TT LE S+ IN N+ + G+P LLE+L W+ R Sbjct: 310 RLVVEVKT-GFDPEAVLEQLYRTTPLEDSFGIN-NVALVGGQPRTLGLLELLRVWVEHRI 367 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTET 412 + VRRR YRL K +RLH++EGLL+A ++IDEVI++IR+ D+ + LM F L+E Sbjct: 368 EVVRRRTAYRLGKRKERLHLVEGLLLAIVDIDEVIQVIRSSDDAGIARARLMDVFDLSEP 427 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QA IL+L+LR L K +++ EQSELEKE L+ IL S+ + ++ E+ A Y Sbjct: 428 QATYILDLQLRRLTKFSRIELEKEQSELEKEIAALEEILGSDAVLRRVVSTEMGDVAATY 487 Query: 473 GDDRRSPLQEREEAKA---------------MSEHDMLPSEPVTIVLSQMGWVRSA---- 513 G RR+ L + + P ++LS G + Sbjct: 488 GTPRRTVLLDSAGGATTSAAAAPGGARGRKPAEISLEIADAPTHVLLSATGLLARTAVAP 547 Query: 514 -------KGHDIDAPGL------------------NYKAGDSFKAAVKGKSNQPVVFVDS 548 +G +D G+ A D+ + V S + V + Sbjct: 548 AAAPTASEGDQLDLDGVALGAPGAPGASGAVSRHGRRHAHDALRGDVMTTSRSDIGLVTT 607 Query: 549 TGRSYAIDPITLPS--------ARGQGEPLTGKLTLPPGATVDHMLME-SDDQKLLMASD 599 GR + + LPS + G P++ + L PG ++ D L + + Sbjct: 608 AGRMLRVSALELPSIPPTDGAPSLSGGIPVSELVELAPGEEALAVVSLADDAPTLALGTA 667 Query: 600 AGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSD 659 G +D V N+ +I L + V+ D ++ I+ +L + S Sbjct: 668 GGVVKRVAASD-VPSNKDEWTVIGLKDGDSVVGAAP-AGDDDEVVFISSDSSLLHYAASA 725 Query: 660 LPQL-SKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI--------HVGKRKIKLR 710 + G G I++ + + G+A+ V P + +T+ VG +K+ Sbjct: 726 VRPQGRAGGGIAGISLAAGQTVVFF-GVARAAVRPELTVVTVGGSAGQLPGVGGGSVKVT 784 Query: 711 PEELQKVTGERGRRGTLMRGLQRIDRVEIDS-----PRRASSG 748 P EL G R G + + + + P RA G Sbjct: 785 PYELYPGKG-RATGGVRSHRFLKGEDRLVLAWVGEGPARAVGG 826 >UniRef50_Q2ST76 DNA gyrase, A subunit n=7 Tax=Mollicutes RepID=Q2ST76_MYCCT Length = 795 Score = 678 bits (1749), Expect = 0.0, Method: Composition-based stats. Identities = 243/745 (32%), Positives = 398/745 (53%), Gaps = 36/745 (4%) Query: 23 MYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSAC 82 M VI+ RALP + DGLKPV RRI+YAM++LG+ + KKSAR VG+V+GKYHPHGDSA Sbjct: 1 MSVIVSRALPDLKDGLKPVHRRIIYAMNDLGITSDKPHKKSARIVGEVIGKYHPHGDSAV 60 Query: 83 YEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTAD 142 YE MV MAQ FSYRYPL+DG GN+G+ D AAMRYTE+RL+K S L+ ++ T Sbjct: 61 YETMVRMAQEFSYRYPLIDGHGNFGSIDG-DGAAAMRYTEARLAKISNYLIKDIDMDTVP 119 Query: 143 WVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTT 202 ++ N+D + EP L LPN+L+NGT GIAVGMAT IPPHNL+EV A A ID T Sbjct: 120 FIDNYDASEHEPAYLTGYLPNLLVNGTMGIAVGMATSIPPHNLKEVVSAINAYIDNNDIT 179 Query: 203 LDQLL-DIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDG----AVVISAL 257 +D++L + + GPD+PT A + +++R+ Y+ GRGSV +RA E+ V++ + Sbjct: 180 IDEILDNHILGPDFPTGALMTNG-SKMREGYKTGRGSVIIRAKIDFEENKKHDRFVVTEI 238 Query: 258 PHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFA 317 P+Q + A+++E+IA +++K + + D+RDES++E ++ + + + D V++ L+ Sbjct: 239 PYQTNKAKIIEKIAELVKDKTIEGIFDIRDESNYEGIRIIIELKK--DANPDVVLSKLYK 296 Query: 318 TTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILE 377 T L+ S+ INL + + + +L I+ ++ F+ + + +R + K+ KR HILE Sbjct: 297 YTALQSSFSINLLTLNNNLP-VLLDLKTIIKNYVEFQVNVIIKRSIFEKNKLTKRYHILE 355 Query: 378 GLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIR 434 L +A N+D+VI II+N E K L +++ E Q +AIL+++L+ L LE KI Sbjct: 356 ALHIALDNVDDVINIIKNSKTSEEAKIQLTNKYNFDEEQNKAILDMRLQRLVGLERDKIT 415 Query: 435 GEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDM 494 E + +++ L ++ ++ + NN+LK +L A +GD+RR+ L + EE + + ++ Sbjct: 416 LEMTNIKERLTYLDILINTKEEQNNVLKNQLNEIADKFGDNRRTELID-EELINIEDEEL 474 Query: 495 LPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK-------AGDSFKAAVKGKSNQPVVFVD 547 +P I+LSQ G++R + + D A GK+ V+F Sbjct: 475 IPDLKWMILLSQEGYIRRINPDEFRIQKRGGRGVSVNAEPNDPIDIATMGKAKDWVLFFT 534 Query: 548 STGRSYAIDPITLP--SARGQGEPLTGKLT-LPPGATVDHMLMESDDQ----KLLMASDA 600 ++G+ Y + S +G P+ L L + +L +++ L + Sbjct: 535 NSGKVYRTKLYNIRSYSRTARGLPIVNFLNDLTSEDKITAILPLRNNKEKFNYLTFVTQK 594 Query: 601 GYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDL 660 G ++ NR GK I L EN ++ D + ++G+++ S + Sbjct: 595 GMIKRTKISEFENINRNGKKAINLRENDQLVSV-FATTGQDTIFIANESGKVIRIKESVV 653 Query: 661 PQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTG 719 S+ G G + + + D + + +T K K P + +++G Sbjct: 654 NPQSRVGSGVRALKLE------TNDVVVGAISSFKLTHITTVSNKGLFKKTPIDDYRISG 707 Query: 720 ERGRRGTLMRGLQRIDRVEIDSPRR 744 G+ +M QR + + R Sbjct: 708 RNGKGIKVMNLNQRTGKFKAIIDAR 732 Score = 82.3 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 65/188 (34%), Gaps = 14/188 (7%) Query: 504 LSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAID- 556 ++Q G ++ K + +N + D + + + +G+ I Sbjct: 591 VTQKGMIKRTKISEFENINRNGKKAINLRENDQLVSVFATTGQDTIFIANESGKVIRIKE 650 Query: 557 -PITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL--VA 613 + S G G L L V + + S+ G +D Sbjct: 651 SVVNPQSRVGSG---VRALKLETNDVVVGAISSFKLTHITTVSNKGLFKKTPIDDYRISG 707 Query: 614 RNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKII 672 RN G ++ L + ++ +D++L I+ G ++ VS++P LS+ G K I Sbjct: 708 RNGKGIKVMNLNQRTGKFKAIIDARETDLILIISSDGNLIKTKVSNIPSLSRNASGVKAI 767 Query: 673 NIPSAEAA 680 + + Sbjct: 768 RLADNQEI 775 >UniRef50_B8DTB4 DNA gyrase subunit A n=23 Tax=Actinobacteridae RepID=B8DTB4_BIFA0 Length = 982 Score = 673 bits (1738), Expect = 0.0, Method: Composition-based stats. Identities = 250/844 (29%), Positives = 380/844 (45%), Gaps = 112/844 (13%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + L E ++L Y+ VI RALP DG+KPVQRRIVY M ++ L + + K Sbjct: 18 EHIVETPLAEEMSKSFLEYAYSVIYARALPDARDGMKPVQRRIVYQMGQMNLLPTRPYMK 77 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SAR VG+V+GK HPHGDSA YEAMV +AQPF+ R PLVDG GN+G+ DD AA RYTE Sbjct: 78 SARVVGEVMGKLHPHGDSAIYEAMVRLAQPFAMRLPLVDGHGNFGSLDDGP--AASRYTE 135 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +RL+ + + +++ + T D+VPN+D L+EP +LP+ +PN+L+NG +GIAVGMAT++ Sbjct: 136 ARLAPAALGMNADIDEDTVDFVPNYDNKLKEPTVLPSAIPNLLVNGASGIAVGMATNMAT 195 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HNL EV AA ++ P TLD L+ V GPD+P II + R YE GRG V R Sbjct: 196 HNLGEVVAAAKYVMKHPDATLDDLMQYVPGPDWPGGGIIIGRQGI-RDAYETGRGVVTTR 254 Query: 243 AVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 + E+ A+V++ LP+ V RVLE+I+ ++N KL + D +D N TR+ Sbjct: 255 SATHVENLTARKKAIVVTQLPYMVGPERVLERISEGVKNHKLDGISGAIDLTDRHNGTRI 314 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 VI ++ D V+ LF T L++++ IN N+ ++GRP L +L W+ RR Sbjct: 315 VIELKT-GFDPAAVLAQLFKHTPLQENFAIN-NVALVNGRPHTLGLRSLLDVWIEHRRGV 372 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQA 414 +RRR +R +K L RLH++EGLL+A ++IDEVI +IR+ D+ K LMSRF L + QA Sbjct: 373 IRRRSEFRRQKALDRLHLVEGLLLALVDIDEVIRVIRSSDDAEAAKNGLMSRFSLDDIQA 432 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 + IL+L+LR L K+ +++ E+ EL+ +L+ IL S ++ ++ E+ YG Sbjct: 433 QYILDLRLRRLTKMSRIELESERDELQSSITELERILGSAALLDGVVIDEMDKAVATYGT 492 Query: 475 DRRSPLQEREEA-----------------------------------------KAMSEHD 493 RR+ L + + +E Sbjct: 493 PRRTVLLDEGDDGRLVPVVAHGDDMPSDAALDAARHAENVLDAADAVAAARKAGETAEAL 552 Query: 494 MLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKSNQPVVFVD 547 + EP I LS G + + A + D + + ++ V Sbjct: 553 RIEDEPCVIALSASGLIARMSIDALTIWAKRGAHTEKREPDDVIVSLMPARTRADYALVT 612 Query: 548 STGRSYAIDPITLP--SARGQ-----GEPLTGKL------TLPPGATVDHMLMESDD--- 591 S GR + LP G G T L PG V L D Sbjct: 613 SAGRMVLAHVVELPNLEVTGHLSLTGGIEATELLTSTESTDPVPGERVIATLALRDTVGQ 672 Query: 592 -------QKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLL 644 + + + G ++I L + ++ D D + Sbjct: 673 DDTAAQLPPVGLGTRNGIVKRWNRE--SPTTMDSWSIIDLKDGDELLVAADAHD-DDRFV 729 Query: 645 AITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYV------------ 691 ++ +L + ++ + G I++ +A V Sbjct: 730 FVSSDSSLLTYEARNVRPQGRTAAGMAGIHLADGCTVLSCAVVAHADVEWHDAEHDDAGN 789 Query: 692 --LPPQSTLTIH----------VGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEI 739 P + + K+ P EL G R G + + I Sbjct: 790 LLSPASGAVVLTVAGDVDALPGTENGAAKVTPLELYPTKG-RATGGVRSQRFLKGQNTLI 848 Query: 740 DSPR 743 + Sbjct: 849 RACV 852 >UniRef50_Q5MZD4 DNA gyrase A subunit n=8 Tax=Cyanobacteria RepID=Q5MZD4_SYNP6 Length = 858 Score = 672 bits (1733), Expect = 0.0, Method: Composition-based stats. Identities = 257/810 (31%), Positives = 401/810 (49%), Gaps = 89/810 (10%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 +D ALH+ + +YL Y+M VI+ RALP DGLKPVQRRI+YAM ELGL F+ Sbjct: 10 ADRILPTALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILYAMHELGLTPDRPFR 69 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VGDVLGKYHPHGD A Y+A+V + Q FS RYPL+ G GN+G+ D AAMRYT Sbjct: 70 KSARVVGDVLGKYHPHGDQAVYDALVRLVQDFSSRYPLLAGHGNFGSID-NDPPAAMRYT 128 Query: 122 ESRLSKYSE-LLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 E+RL+ S LL E+G+ T D+V NFD + QEP +LPA+LP +LLNG +GIAVGMAT+I Sbjct: 129 ETRLAPVSHVALLEEIGEETVDFVANFDNSQQEPSVLPAQLPFLLLNGCSGIAVGMATNI 188 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL E+ A IALID+P+ + LL V GPD+PT E+I S+ I Y GRGS+ Sbjct: 189 PPHNLGEIVDALIALIDRPQLSDRDLLRYVPGPDFPTGGEVIGSQ-GILDAYLEGRGSIP 247 Query: 241 MRAVWKKEDGA----------VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESD 290 +R + + E+ ++++ LP+QVS A +E++A + + KL + D+RDESD Sbjct: 248 VRGIARIEEIQPGKGRHRRPVIIVTELPYQVSKAGWIEKVADLVNDGKLQGIADIRDESD 307 Query: 291 HENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEW 350 E ++ + D+V+ L+ T L+ ++ L I ++G+P +L ++L ++ Sbjct: 308 REGMRVVIEL--RRDAQADKVLEQLYKRTALQSNFGAILLAI-VEGQPQQLSLKQLLEQF 364 Query: 351 LVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRF 407 L FR T+RRR + LE+ +RL ILEGLL + ++D +IEI+R + + L F Sbjct: 365 LSFREGTLRRRYGHELEQTERRLMILEGLLRSLSDLDGLIEILRQSPDGGTARARLQVHF 424 Query: 408 GLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQA 467 L E QA+A+L + +R + LE+ +++ E + L +++ +LQ +L + LKK+L+ Sbjct: 425 DLNERQADAVLSMPMRRITSLEQEQLQQEAANLREQQARLQTLLGDRPTLLKALKKDLRD 484 Query: 468 DAQAYGDDRRSPLQEREEAKAMSEHDMLP------------------------------- 496 + +G R+ L E + + Sbjct: 485 LKRRFGSPHRTRLPEIPPEAIAAPRQVTAPVAPISAPTPATAGPIQGELIFNSATDSAVP 544 Query: 497 ------------SEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAG-----DSFKAAVKGKS 539 E + LS +++A +++ L K+G D K Sbjct: 545 DSAPVIAPRFAFQESTWLCLSDREQLQAASATELEPW-LKAKSGAQERTDFPKVLQWADP 603 Query: 540 NQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLME----SDDQKLL 595 Q ++ + + GR+Y + P+ L +T + S+++ LL Sbjct: 604 RQDLLVITAEGRAYRRSLREV-----HPGPIANLLPTGRQSTAIAATLLLPLASEERSLL 658 Query: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 S G +L + G L+ L E ++ + +L + GR+L Sbjct: 659 PLSSQGRVKRLALTELAEISNRGLQLLKLAEE-EIIQAACLCAPQQEVLLGSSGGRLLRL 717 Query: 656 PVSDLPQLSK-GKG-NKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEE 713 +S+LP S+ +G +++ + E G L P L + +K P Sbjct: 718 SLSELPLASRISRGQPRLLRLREGEQPLGCLSL------PSGQDLLLVSTLGLVKRLPLG 771 Query: 714 LQKVTGERGRRGTLMRGLQRIDRVEIDSPR 743 L ++ R + D+ + Sbjct: 772 LLRLC--RAGD-LGNNAFRFTDKRDRLIAL 798 >UniRef50_C1N3Z1 Predicted protein n=2 Tax=cellular organisms RepID=C1N3Z1_9CHLO Length = 1082 Score = 670 bits (1730), Expect = 0.0, Method: Composition-based stats. Identities = 243/778 (31%), Positives = 362/778 (46%), Gaps = 99/778 (12%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 ++ L +YL Y+M VI+ RALP + DGLKPV RRI+YAM ELGL++ FK Sbjct: 59 NERIIDTELSVEASQSYLAYAMSVIVGRALPDVRDGLKPVHRRILYAMHELGLDSKKPFK 118 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K AR VG+VLGK+HPHGD + Y+A+V MAQ FS LVDG GN+G+ D AAMRYT Sbjct: 119 KCARVVGEVLGKFHPHGDQSVYDALVRMAQDFSMSAQLVDGHGNFGSLDADPP-AAMRYT 177 Query: 122 ESRLSKYSELLL-SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 E RL +E +L +++ D+ FDG+ EP +LPARLPNIL+NG+TGIAVGMAT I Sbjct: 178 ECRLRSVAEAMLLADIDADAVDFTETFDGSQNEPSVLPARLPNILINGSTGIAVGMATSI 237 Query: 181 PPHNLREVAQAAIALIDQPK-TTLDQLLDIVQGPDYPTEAEIITSRAE--IRKIYENGRG 237 PPHNLREVA A P TLD LL ++ PD+PT I+ + R +Y G+G Sbjct: 238 PPHNLREVADALAVYAADPDGCTLDDLLKVMPAPDFPTSGIIMAPKEGKGFRDMYATGKG 297 Query: 238 SVRMRAVWKKED-------------GAVVISALPHQ-----------------VSGARVL 267 SV +R E+ AV+I+++P+Q + A + Sbjct: 298 SVTLRGAAHIEEIKTSVRGKNATTKNAVIITSIPYQARSIHWSPYDRVGVVNATNKASLC 357 Query: 268 EQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRI 327 QIA + +++L V D+RDESD + +V + RS D + V L+ T L+ + Sbjct: 358 GQIADLVNSRQLDGVVDVRDESDRDGMRVVVEIRRSG--DPNFVREQLYTRTRLQVRVSV 415 Query: 328 NLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNID 387 NL + + P V L++I+ E+L FR +++ RR + L K RLH++EG L D Sbjct: 416 NL-VGLIGREPKVLTLMDIMREFLEFRCESIERRARHELSKASSRLHVVEGYLAVQAAPD 474 Query: 388 EVIEIIRNEDE---PKPALMSR-FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKE 443 V+ IR + + L F L++ Q+EA+L + LR L LE K+R E+++L + Sbjct: 475 AVVAAIRAAKDGPEAQKTLQEAPFSLSKEQSEAVLAMPLRRLTGLEHDKLRAEEADLTAK 534 Query: 444 RDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKA--------------- 488 +QL +L+ + + E + YG +R++ + A Sbjct: 535 VEQLNALLSDRALVIAAVASEAKELRDKYGVERKTLIDHSAAKLAAEVAEARRRSPPSGD 594 Query: 489 ------------------MSEHDMLP----SEPVTIVLSQMGWVRSAKGHDIDAPGLNY- 525 ++ +P IV++ G+++ Sbjct: 595 GGEDVGNVAEREMAAAALYAKRMNIPLDSLDADNLIVMTGKGYIKRIDPKIFSRQNKGTI 654 Query: 526 -------KAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTL 576 + GD V+F GR YA+ +P S G P T L L Sbjct: 655 GKKGGRMRGGDQVTKVTHCNGLDTVLFFTDRGRVYAVRAYDIPQSSTTALGTPFTRVLKL 714 Query: 577 PPGATVDHMLMESD--------DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENA 628 G T+ ML + L+M + G ++ NRAGK + L + Sbjct: 715 AEGETITAMLPVDTASRRGSNVGEHLVMLTARGVVKKTPISEFANINRAGKRALGLQKGD 774 Query: 629 HVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDG 685 + ++ D D ++ G +L F + + S+ G G K + A A E Sbjct: 775 RLKHVELVRDG-DGIMVAGVDGMVLHFSMDSIRAQSRIGSGVKAMKFREASAGATEKK 831 Score = 62.6 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 41/109 (37%), Gaps = 16/109 (14%) Query: 594 LLMASDAGYGFVCTFNDLVARNRAGK--ALITLPENAHV-------MPPVVIEDAS---- 640 +L+ + G G + + R G I L E + + + P + E Sbjct: 967 VLLVTSEGQGKRISVGQFRQKGRGGLGNKAIGLEEGSRLAAMCITGVDPALREAGDAECV 1026 Query: 641 -DMLLAITQAGRMLMFPVSDLPQL-SK-GKGNKIINIPSAEAARGEDGL 686 + ++ + AG + + V++L + KG K++ + + R L Sbjct: 1027 AEEVIIGSTAGVLNRYDVTELRPQLGRNAKGVKLMKLNDGDTVRDITLL 1075 Score = 48.4 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 32/116 (27%), Gaps = 10/116 (8%) Query: 642 MLLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGE--DGLAQLYVLPPQ--- 695 M+L +T G+ V Q +G GNK I + G+ Sbjct: 966 MVLLVTSEGQGKRISVGQFRQKGRGGLGNKAIGLEEGSRLAAMCITGVDPALREAGDAEC 1025 Query: 696 --STLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDS--PRRASS 747 + I + + R +G + L D V + P A Sbjct: 1026 VAEEVIIGSTAGVLNRYDVTELRPQLGRNAKGVKLMKLNDGDTVRDITLLPVDAVE 1081 >UniRef50_Q04F36 DNA topoisomerase IV subunit A n=1 Tax=Oenococcus oeni PSU-1 RepID=Q04F36_OENOB Length = 811 Score = 667 bits (1721), Expect = 0.0, Method: Composition-based stats. Identities = 212/735 (28%), Positives = 362/735 (49%), Gaps = 30/735 (4%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + L+L + + YS Y+I +RALP I DGLKPVQRRI++AM+E G ++KS Sbjct: 6 RIQELSLEDVMGERFGRYSKYIIQERALPDIRDGLKPVQRRILFAMNEDGNTYQHAYRKS 65 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 A+ VG+V+G YHPHGDS+ Y+A+V M+Q + R PL+D GN G+ D AAMRYTE+ Sbjct: 66 AKAVGNVMGNYHPHGDSSIYDALVRMSQNWKMREPLIDMNGNNGSID-NDPPAAMRYTEA 124 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 RLS + +L++L Q D V NFD T EP +LP+R+PN+L+NG +GI+ G AT+IPPH Sbjct: 125 RLSMIAGDMLTDLDQQAVDMVLNFDDTRYEPTVLPSRIPNLLVNGASGISAGYATEIPPH 184 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL EV A I L+ P +L+ L+ V GPD+PT II I+ Y GRG V +RA Sbjct: 185 NLGEVINALIYLLSHPAASLEDLMKYVSGPDFPTGG-IIQGLDGIKNAYTTGRGKVYLRA 243 Query: 244 VWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + + + I+ LP++V+ + ++ +I NK + + ++RD++ E + Sbjct: 244 KTEIKQLRAGKKQIEITELPYEVNKSELVARIDEIRLNKDVNGITEVRDDTSREGLLIAI 303 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + + + + ++++LF TDL+ +Y N+ I RP L + LS +L FR++ + Sbjct: 304 ELSK--DANAEGILDYLFKKTDLQIAYNFNMTAIN-KQRPVSVGLKQALSAFLDFRKEVI 360 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAE 415 RRR + L+K R I+EGL+ +DEV+ IR + K L+ +F ++ QAE Sbjct: 361 RRRTEFELKKAQARQEIVEGLIKMLSILDEVVATIRGSESRKNAKENLIKKFQFSDPQAE 420 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 AI+ L+L L + + ++ E L K+ + IL +++N +L+ EL+ + Y + Sbjct: 421 AIVTLQLYRLTNTDVVALQNEHDRLTKQISEFNSILKETKELNKVLRNELKEIEKKYSNP 480 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN-YKAGDSFKAA 534 RRS +Q + M+ +E V + +++ G+ + A A N D Sbjct: 481 RRSQIQTEVSQLKIDTAVMIANEDVIVQITKNGYAKRASFRSYKATDDNGLTDDDYPVYL 540 Query: 535 VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLT-LPPGATVDHMLMESD- 590 K + + + G L + + GE L+ +++ L V + D Sbjct: 541 AKVNTLSSLFIFTNKGNLIYRQVYELADTKWKDVGEHLSQEISGLAEDEIVIKVFDFKDL 600 Query: 591 --DQKLLMASDAGYGF---VCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLA 645 + S + N + I + ++ + +++ Sbjct: 601 KQTGTFVFTSSDAFVKQVDKNALNPTKYYKKRASKAIAIKGKNVLVSVAFAASQNHLVVM 660 Query: 646 ITQAGRMLMFPVSDLPQL-SKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGK 704 TQ G + FP+ ++ + +K G K I + + + ++ + + + + Sbjct: 661 ATQKGYLYKFPIGEIALMTAKSSGAKPAKISKKDR------IVSMDLIDSEDLMVLMSDR 714 Query: 705 RKIKLRPEELQKVTG 719 K+ ++ Sbjct: 715 GHSKIINPLEIPIST 729 >UniRef50_A8UVW0 DNA gyrase A subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UVW0_9AQUI Length = 781 Score = 663 bits (1710), Expect = 0.0, Method: Composition-based stats. Identities = 246/736 (33%), Positives = 399/736 (54%), Gaps = 44/736 (5%) Query: 14 TENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGK 73 + +Y++Y+M VI+ RA+P + DGLKPVQRRI+YAM E+GL FKKSAR VG+VLGK Sbjct: 12 VKQSYIDYAMSVIVGRAIPDVRDGLKPVQRRILYAMYEMGLMPEKPFKKSARVVGEVLGK 71 Query: 74 YHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSELLL 133 +HPHGD A Y+A+V MAQ FS RYPL+ GQGN+G+ D A MRYTE++LSK + LL Sbjct: 72 FHPHGDQAVYDALVRMAQDFSMRYPLIIGQGNYGSVDG-DPPAQMRYTEAKLSKVAVELL 130 Query: 134 SELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAI 193 ++ + T D++PNFD +L EP +LP++ PN+L NGT GIAVG+AT IPPHNLREV +A + Sbjct: 131 EDIDKDTVDFIPNFDESLMEPAVLPSKFPNLLCNGTAGIAVGLATSIPPHNLREVGKALV 190 Query: 194 ALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED---- 249 L P + +++L+IV+GPD+PT I + I++IYE GRG V+++A E Sbjct: 191 ELAKNPNMSTEEILEIVKGPDFPTGGVIENYKD-IKEIYETGRGIVQVKAKAHVEKVQGG 249 Query: 250 -GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308 +++S +P+QV+ A ++++IA +R+ +L + D+RDESD + ++ + R Sbjct: 250 REQIIVSEIPYQVNKAELIKKIADNVRSGRLKEISDIRDESDKDGIRIVIELKRE--AKG 307 Query: 309 DQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEK 368 ++V+ LF T L K + +NL ++ ++G P + + E+L E++ R + RR + L+K Sbjct: 308 EKVLKKLFKYTQLRKGFPVNL-VVLINGEPKLVGIKELLREFIKHRLSIILRRTRFFLKK 366 Query: 369 VLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQAEAILELKLRHL 425 RLH+++GLL+A N+DEVIE IR + + L +RFGLTE QA+A+L+L+L L Sbjct: 367 AEDRLHVVQGLLIALNNLDEVIEGIRRSKDVQEAREMLQARFGLTERQAQAVLDLRLHRL 426 Query: 426 AKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREE 485 LE K+R E+++L ++ + + ++ SE + + +E + + +GD RR+ ++ EE Sbjct: 427 TSLERDKLRQEEADLLQKIEYYRKVVGSEEERIKIFVEETENLVKKFGDPRRTFIEGIEE 486 Query: 486 AKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVF 545 + + + + G V + + + + Sbjct: 487 KIEEG--------SLVVAVLENGKVMPVENMPEGES--------PVVDILDVPFTEGLFL 530 Query: 546 VDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFV 605 V + GR Y + S QG + V + E +LL+A+ G Sbjct: 531 VSNRGRVYWLAG----SQALQGSKVN--FKESEEYIVGAFIRERFADRLLLATRNGMIKK 584 Query: 606 CTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLP-QLS 664 + + G +I L E+ V+ D SD +L T+ G++ F + ++P Sbjct: 585 IPLVEFEYK-AQGMRIIKLAEDDEVVGIAQSIDMSD-ILMFTRRGKVARFSIREIPAATP 642 Query: 665 KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRR 724 KG + I + + G + Q + + K+K ++ V RG + Sbjct: 643 GTKGAQGIKVEDNDEVAGARVIR-----EDQPYIIVVTVDGKVKRIYQQEIGVR-NRGVK 696 Query: 725 GTLMRGLQRIDRVEID 740 G + G R V++ Sbjct: 697 GVNVLGSARERLVDLL 712 Score = 67.6 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 24/196 (12%), Positives = 62/196 (31%), Gaps = 13/196 (6%) Query: 481 QEREEAKAMSEHDMLPS--EPVTIVLSQMGWVRSAKGHDIDAPGLNYK-----AGDSFKA 533 +E++ + ++ ++ G ++ + + + D Sbjct: 551 VNFKESEEYIVGAFIRERFADRLLLATRNGMIKKIPLVEFEYKAQGMRIIKLAEDDEVVG 610 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHM-LMESDDQ 592 + ++ G+ +P+A G + + V ++ D Sbjct: 611 IAQSIDMSDILMFTRRGKVARFSIREIPAATP-GTKGAQGIKVEDNDEVAGARVIREDQP 669 Query: 593 KLLMASDAGYGFVCTFNDLVARNRAGKALITLPEN-AHVMPPVVIEDASDMLLAITQAGR 651 +++ + G ++ RNR K + L ++ + I+D + LL T+ GR Sbjct: 670 YIIVVTVDGKVKRIYQQEIGVRNRGVKGVNVLGSARERLVDLLPIKDELE-LLITTKLGR 728 Query: 652 ML--MFPVSDLPQLSK 665 D+P + Sbjct: 729 AFYDRIRAEDIPLSKR 744 >UniRef50_A9KS51 DNA topoisomerase (ATP-hydrolyzing) n=4 Tax=Firmicutes RepID=A9KS51_CLOPH Length = 748 Score = 658 bits (1698), Expect = 0.0, Method: Composition-based stats. Identities = 241/765 (31%), Positives = 393/765 (51%), Gaps = 61/765 (7%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 ++ +L E + ++ NY+M VIM RA+P + DGLKPVQRRI+Y+M ELGL+ + Sbjct: 5 AENIIQLDFSEEMKTSFRNYAMSVIMARAIPDVRDGLKPVQRRILYSMIELGLDPKKPHR 64 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VGD +GKYHPHGDS+ Y+A+V M +P+S + PLVDG GN+G+ D AAMRYT Sbjct: 65 KSARIVGDTMGKYHPHGDSSIYDALVHMTEPYSMQIPLVDGHGNFGSIDG-DGAAAMRYT 123 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+RLS + LL L +G ++VPNFD + +EP +LPA LPN+L+NGTTGIAVGMAT++P Sbjct: 124 EARLSDGAMTLLDHLDKGLVEFVPNFDESEKEPSVLPAMLPNLLINGTTGIAVGMATNMP 183 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHN EV + IA ID P T + L+ + GPD+PT II S IR IYE G G +++ Sbjct: 184 PHNPSEVIEGVIAYIDNPDITTEGLMKYIPGPDFPTGGTIINSED-IRNIYETGEGRLKV 242 Query: 242 RAVWKKE-----DGAVVISALPHQV--SGARVLEQIAAQMRNKKLPMVDDLRDESDHENP 294 RA + E +VI+ +P+ V + +++E + M++K + D+RDES E Sbjct: 243 RAKTEIEASDNGRKNIVITEIPYTVAGNKTKLVESLVDLMKDKVFDEIFDVRDESSKEGI 302 Query: 295 TRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFR 354 ++ V + D++ ++N L+ T +E +Y +NL + D +P V L ++ E++ F+ Sbjct: 303 RVVIEVKKDR--DIENLLNGLYKKTSMEDTYGVNLLAV-KDQQPIVFKLKNLVGEFVSFQ 359 Query: 355 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKP------------- 401 + + + L+K KRL I++GL+ A ID +IEI+R K Sbjct: 360 EELYTKEYEHLLDKANKRLEIVDGLIRATDVIDLIIEILRGSSSIKQAKDCLIHGNTTEI 419 Query: 402 --------ALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILAS 453 ++ TE QA+AIL + L L LE +++ E L +Q Q IL + Sbjct: 420 NFKTEASRKKAAKLDFTERQADAILAMPLSKLIGLEILRLHEENQSLLDSIEQYQSILGN 479 Query: 454 ERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSA 513 ++++ ++K L+ + + R + L E A+ + + + E + I++ + G+ +S Sbjct: 480 KKELFKVIKSNLKEYKKQFNVPRHTVLANMEIAEYV---EEVKVEDIYILIDKFGYTKSV 536 Query: 514 KGHDI-DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPL 570 I N K F VK K+ + + G Y + +P + +G + Sbjct: 537 DNTSISRVSEDNLKD---FVHIVKMKNTDRLCLFTAQGNMYQVKAEKIPKCKIKDKGTLI 593 Query: 571 TGKLTLPPGATVDHMLMES-DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAH 629 + + ++ E + +LL + G+ + + + NRA + L E H Sbjct: 594 HNLCKVDKEEILLYIAFEDLFESQLLFTTKNGFIKLVSGIEFET-NRAMISATKLEEADH 652 Query: 630 VMPPVV-----IEDASDMLLAITQAGRMLMFPVSDLPQLSKG-KGNKIINIPSAEAARGE 683 V+ + I + ++ +T+ L FP++++ +L K KG K I + Sbjct: 653 VVSVLCLSAHTISNPDSKVILLTEDSLSLGFPLTEVSELKKTSKGVKGITLEKK------ 706 Query: 684 DGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLM 728 D +A V P++ + GK + +R +G Sbjct: 707 DKVAFATVALPETEFFEYQGKELSAKKVRN-----RKRAAKGQKA 746 >UniRef50_Q98RX7 DNA gyrase A-subunit n=2 Tax=Cryptophyta RepID=Q98RX7_GUITH Length = 877 Score = 654 bits (1688), Expect = 0.0, Method: Composition-based stats. Identities = 229/777 (29%), Positives = 396/777 (50%), Gaps = 42/777 (5%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 L +Y+ Y++ VI RALP I DGLKPV RRI++AM EL L A ++K Sbjct: 64 RIINTELQNEMAKSYMEYALSVIYGRALPDIRDGLKPVHRRILFAMYELNLVPEAPYRKC 123 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VG+VLGKYHPHGD+A Y+++V M+Q FS R L+ G GN+G+ D AAMRYTE Sbjct: 124 ARVVGEVLGKYHPHGDTAVYDSLVRMSQEFSMRKVLILGHGNFGSIDH-DPPAAMRYTEC 182 Query: 124 RLSKYS-ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +LS S + LL EL T ++V NFDG+ EP ++P+ +P+ILLNG++GIAVGMAT IPP Sbjct: 183 KLSNLSVDTLLKELDFKTVEYVYNFDGSSIEPSIMPSVIPSILLNGSSGIAVGMATSIPP 242 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HNL E+ ++ +ALID T +L+ + PD+PT II + +YE G S+ +R Sbjct: 243 HNLGEIVRSCLALIDNYNITNQELIKYLPCPDFPTGGLII-GNNSCKDLYEKGISSIILR 301 Query: 243 AVWKKE---------DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHEN 293 E ++I+ +P Q++ + ++ ++A + +K + + D+RDESD + Sbjct: 302 GKINVEFSKSVKKVSKYNLIITEIPFQINKSMLIAKLADLVNSKIIQGISDIRDESDRKG 361 Query: 294 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVF 353 ++ + R D +++ + + L+ ++ + I +D +P + NL EILS +L F Sbjct: 362 IRIVIEIKR--DYDPIKIVKIILKKSSLQITFSSYMLCI-VDKQPILVNLKEILSLFLHF 418 Query: 354 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLT 410 RR +R+ + + L+ +LK+ +IL+G+ ++ ID IE I+ E K LM FGL+ Sbjct: 419 RRKIIRKNIKFELKNILKKKNILKGISISLEKIDLTIEKIKKSINNLEAKCILME-FGLS 477 Query: 411 ETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQ 470 + Q+EAIL L+LR L KLE KI + + ++L+ IL+S ++ ++K +++ ++ Sbjct: 478 QEQSEAILNLQLRRLTKLESKKIDNDFEITKSSLNELKCILSSNILIDGIIKNQIKNISE 537 Query: 471 AYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYK---- 526 YG R++ L + E + + + I+++Q +++ ++ K Sbjct: 538 IYGFPRKTLLINSINENIIEELETIENYESVIMITQY-YIKKMFLESFESQTRGTKGKRG 596 Query: 527 ----AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP--SARGQGEPLTGKLTLPPGA 580 GD + ++ + S G +Y I +P +G P+ L Sbjct: 597 LIISDGDEISHFFSCNNRDDLIAISSGGIAYKIKVSRIPISKRNSKGTPILSILKGLENN 656 Query: 581 TVDHMLMESD---DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIE 637 + ++ S+ ++ L++ + G + ++ + G ++TL EN + Sbjct: 657 QISSIIATSNCETEKFLVLLTQKGLIKRTSISNFNNISSRGLIILTLDENDSLKWVRKCY 716 Query: 638 DASDMLLAITQAGRMLMFPVS--DLPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVLPP 694 + D ++ T+ G++L F S +L + KG K I++ S + D + + Sbjct: 717 N-DDSVIISTKKGKLLRFNASQKELKSTGRTSKGIKSIDLDSNDIISDFDIIPSQAITN- 774 Query: 695 QSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 + + K K+ +RG++G + L R + + R + E Sbjct: 775 --FIILLTEMGYGKRIKVTELKIQ-KRGKKGIKVISL-RENVNDYLISSRFCIENEE 827 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 31/208 (14%), Positives = 71/208 (34%), Gaps = 16/208 (7%) Query: 498 EPVTIVLSQMGWVRSAKGHDIDAPGLN------YKAGDSFKAAVKGKSNQPVVFVDSTGR 551 E ++L+Q G ++ + + DS K K ++ V+ G+ Sbjct: 670 EKFLVLLTQKGLIKRTSISNFNNISSRGLIILTLDENDSLKWVRKCYNDDSVIISTKKGK 729 Query: 552 SYAIDPITLP-SARGQGEPLTGKLTLPPGATVDHMLMESDDQ---KLLMASDAGYGFVCT 607 + + G+ + L + + +++ ++ GYG Sbjct: 730 LLRFNASQKELKSTGRTSKGIKSIDLDSNDIISDFDIIPSQAITNFIILLTEMGYGKRIK 789 Query: 608 FNDLV--ARNRAGKALITLPEN--AHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQL 663 +L R + G +I+L EN +++ ++ +L T G ++ +SD+ Sbjct: 790 VTELKIQKRGKKGIKVISLRENVNDYLISSRFCI-ENEEILISTSYGNVVKQKISDIAVQ 848 Query: 664 SK-GKGNKIINIPSAEAARGEDGLAQLY 690 K KG I + + + + Sbjct: 849 KKNSKGIIIQRLTEGDKVSKISIINSVI 876 Score = 43.4 bits (101), Expect = 0.033, Method: Composition-based stats. Identities = 35/274 (12%), Positives = 88/274 (32%), Gaps = 30/274 (10%) Query: 384 LNIDEVIEIIRNEDEPKPALMSRFGLTETQAEA--ILELKLRHLAKLEEMKIRGEQSELE 441 N D++I I + +SR +++ ++ IL + L LE +I + Sbjct: 612 NNRDDLIA-ISSGGIAYKIKVSRIPISKRNSKGTPILSI----LKGLENNQISSIIATSN 666 Query: 442 KERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVT 501 E ++ +L + + R + +E ++ ++ Sbjct: 667 CETEKFLVLLTQKGLIKRTSISNFNNI-----SSRGLIILTLDENDSLKWVRKCYNDDSV 721 Query: 502 IVLSQMGWV----------RSAKGHDIDAPGLNYKAGDSFKAAVKGKS---NQPVVFVDS 548 I+ ++ G + +S ++ + D S ++ + Sbjct: 722 IISTKKGKLLRFNASQKELKSTGRTSKGIKSIDLDSNDIISDFDIIPSQAITNFIILLTE 781 Query: 549 TGRSYAIDPITLPSARGQGEPLTGKLTLPPG--ATVDHMLMESDDQKLLMASDAGYGFVC 606 G I L + +G+ ++L + +++++L+++ G Sbjct: 782 MGYGKRIKVTELKIQK-RGKKGIKVISLRENVNDYLISSRFCIENEEILISTSYGNVVKQ 840 Query: 607 TFNDLV--ARNRAGKALITLPENAHVMPPVVIED 638 +D+ +N G + L E V +I Sbjct: 841 KISDIAVQKKNSKGIIIQRLTEGDKVSKISIINS 874 >UniRef50_Q7V9E4 DNA gyrase/topoisomerase IV, subunit A n=17 Tax=cellular organisms RepID=Q7V9E4_PROMM Length = 829 Score = 651 bits (1680), Expect = 0.0, Method: Composition-based stats. Identities = 248/776 (31%), Positives = 396/776 (51%), Gaps = 55/776 (7%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + + +ALH+ + +YL Y+M VI+ RALP DGLKPVQRRI++AM ELGL ++K Sbjct: 4 ERLQPIALHQEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRILFAMHELGLTPDRPYRK 63 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 AR VGDVLGKYHPHGD A Y+A+V + Q FS R+P++DG GN+G+ D AAMRYTE Sbjct: 64 CARVVGDVLGKYHPHGDQAVYDALVRLVQNFSSRFPVLDGHGNFGSVD-DDPPAAMRYTE 122 Query: 123 SRLSKYSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 +RL+ + + LL E+G+ T D+ NFDG+ QEP +LPA+LP +LLNG +GIAVGMAT IP Sbjct: 123 TRLASIAHMALLDEIGEETVDFTANFDGSQQEPSVLPAQLPFLLLNGCSGIAVGMATSIP 182 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNL EV IALI +P + D+LL ++ GPD+PT EI+ I + Y GRGS+ M Sbjct: 183 PHNLGEVVDGLIALIRKPDLSDDKLLGLIPGPDFPTGGEILLGT-GIHETYLKGRGSIPM 241 Query: 242 RAVWKKED----------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDH 291 R V E+ AVV++ LP+Q+S A +E++A + N K+ + D+RDESD Sbjct: 242 RGVAHVEEIQPGKGRHRRSAVVVTELPYQLSKAGWIEKLADLVNNGKIGGIADIRDESDR 301 Query: 292 ENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWL 351 E +V + + + V+ L T L+ ++ + + ++G+P +L ++L +L Sbjct: 302 EGMRIVVEL--RRDANPENVLGDLHRRTSLQSNFGA-ILLALVNGQPQQLSLRKLLQTFL 358 Query: 352 VFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRN---EDEPKPALMSRFG 408 +R TV RR N+ LEK RL ++EGL+ A + VI +I+ + LM + Sbjct: 359 EYRELTVIRRTNHALEKTKARLEVVEGLITALNALQAVIAMIQEAADAAAARARLMVQLD 418 Query: 409 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 L E QA+A+L + LR L LE+ +R E EL+++++QLQ +L + M +L +EL+ Sbjct: 419 LNEKQADAVLAMPLRRLTSLEQSSLRQEAKELQEKQEQLQFLLENRESMLEVLIQELRQL 478 Query: 469 AQAYGDDRRSPLQEREEAKAMSEHDML-PSEPVT-------------IVLSQMGWVRSAK 514 + + + RR+ L E + P+ V I++ Q V+ Sbjct: 479 KKRFNNPRRTRLVEGGDDLVAERAANQRPNAEVQRQQALSALPSDGRILIQQDSQVKVMS 538 Query: 515 GHDIDAPGLNY--KAGDSF---KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEP 569 + LN K D + + + ++ V + GR + A Q Sbjct: 539 PQILGRLHLNEACKLSDGPSPARLILPIEPAPRLLAVTNNGRV---ALVRWEFAGQQPGS 595 Query: 570 LTGKLTLP-PGATVDHML--MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE 626 L L T+ ++ + L + S G +++ + ++ L + Sbjct: 596 LERFLPGGLEKETLINIFPLPVDQNLSLGLLSSDGRFKRLPIEEVMELSGRAATIVKLKD 655 Query: 627 NAHVMPPVVIEDASDMLLAITQAGRMLMFPV--SDLPQLSK-GKGNKIINIPSAEAARGE 683 ++ I A+D ++ + GR++ V +P + K +G + + E Sbjct: 656 GV-ILKSAFICKANDDVILASNIGRVIRINVNNDSMPLMGKLAQGPMTMRL------LPE 708 Query: 684 DGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVT-GERGRRGTLMRGLQRIDRVE 738 + + PP T+ + R K + + +RG G + ++ R + Sbjct: 709 EMVVGAVSCPPNCESTVLLATRLGKFAKILVSSIRICQRGDLGEIGLTIKDSSRDQ 764 >UniRef50_Q0SRA9 DNA gyrase/topoisomerase IV, A subunit family protein n=37 Tax=Clostridium RepID=Q0SRA9_CLOPS Length = 979 Score = 649 bits (1674), Expect = 0.0, Method: Composition-based stats. Identities = 233/713 (32%), Positives = 362/713 (50%), Gaps = 32/713 (4%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 + R+ L E + YL Y++ V DRALP + DGLKPV RRI+Y L + Sbjct: 11 DNNIIRMPLEEVMPDNYLPYAVEVAKDRALPDVRDGLKPVHRRILYGAYMLKAFPDKPYY 70 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VGD+LGKYHPHGDS+ Y+AMV++AQ FS R PL+DG GNWG+ D AAMRYT Sbjct: 71 KSARIVGDILGKYHPHGDSSVYDAMVILAQNFSTRAPLIDGHGNWGSIDG-DGAAAMRYT 129 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+RLS S +L ++ + D VPN+ + EPK+LPAR PN+L+NGT GIAVG++T+IP Sbjct: 130 EARLSSISMEMLRDIEKNVVDMVPNYSDSEMEPKVLPARYPNLLVNGTFGIAVGLSTNIP 189 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNLREV +A ID + T +L++ ++GPD PT +I + YE G G V + Sbjct: 190 PHNLREVIDGTLAYIDNNEITTRELMNYIKGPDLPTGGVLI-GEKTLLSAYETGEGKVTL 248 Query: 242 RAVWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKK----LPMVDDLRDESDHE 292 RA K E +VI+ P++ + AR+L+ I+ +K+ L + D+RDESD Sbjct: 249 RAKAKIETLENGRLGIVITEFPYRRNKARILQTISDMTGDKRHAKALDGIVDIRDESDRT 308 Query: 293 NPTRLVIVPRSNRVD-MDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWL 351 ++ ++ D D+V+ +L+ TDL+ + N+ + DG+P L I+S ++ Sbjct: 309 GIRAVIEFKKAVDHDMADKVLKYLYKKTDLQGNISFNM-VALADGKPETMGLKTIISHYV 367 Query: 352 VFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFG 408 ++D V RR LE KR HI+EG + A +DEVI IR ++ + L+ +FG Sbjct: 368 NHQKDVVTRRTKRELEVAEKRFHIVEGFIKAIGIMDEVIATIRASKSKKDAHENLVLKFG 427 Query: 409 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 T+ QAEAILEL L L LE + E EL K+ L+ IL +E + ++K EL+ Sbjct: 428 FTDLQAEAILELMLYRLTGLEIKVFQKEHKELSKKIKALRKILENESVLLGVIKDELKEV 487 Query: 469 AQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG-----L 523 A+ YGD+RR+ L E E + +++ +E V + LS G+++ + + Sbjct: 488 AEVYGDERRTALIEDESEAKIDLEELIVAEDVMVTLSNEGFIKKIPLKTYNRSNVDENEI 547 Query: 524 NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARG--QGEPLTGKLTL--PPG 579 Y+ GD K +K + + G Y I ++ + +GE L + Sbjct: 548 EYREGDYLKFLIKSNTKDTLAIFTDKGTVYQIKCNSVADKKWKDKGERLEDLIRGLSLED 607 Query: 580 ATVDH---MLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVI 636 + + ++ + G T + V I L + + +I Sbjct: 608 EKIIALESIENFLPNKCFKFITANGLIKKTTLDKFVTAYSK-LMAIKLKNDDLLASVSLI 666 Query: 637 EDASDM--LLAITQAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGL 686 + + + T G + +L + G +++ + S + + Sbjct: 667 DSQDEERFVEIETTNGLNFVVSEPELEFTDRNILGVQLVPLKSGNQIKSIRFV 719 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 48/416 (11%), Positives = 123/416 (29%), Gaps = 66/416 (15%) Query: 367 EKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLA 426 +K + LE L+ DE I + + + P +F A +++ Sbjct: 587 KKWKDKGERLEDLIRGLSLEDEKIIALESIENFLPNKCFKF----ITANGLIK------- 635 Query: 427 KLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG------------D 474 K K S+L + + +LAS +++ ++ G Sbjct: 636 KTTLDKFVTAYSKLMAIKLKNDDLLASVSLIDSQDEERFVEIETTNGLNFVVSEPELEFT 695 Query: 475 DRR------SPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAG 528 DR PL+ + K++ D + I +++ G +++ + ++ Sbjct: 696 DRNILGVQLVPLKSGNQIKSIRFVDNYEYKEFIIGINKKGNIKTFSNMNSNSYEK----- 750 Query: 529 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLT-LPPGATVDHMLM 587 VK S + ++ + G+ + L + ++ + + + Sbjct: 751 ------VKVNSFRNIIAFSNKGKVFKFPAYLLQNTEE--SNISDLVDGFEKDELIIKVAP 802 Query: 588 ESD------DQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASD 641 ++ D + S G + + + A ++ + + Sbjct: 803 INEFGKIGEDLFVYFFSREGLVKKTSLREFLGEFNNQIAYKFKTPKDELVNVDINF-ENA 861 Query: 642 MLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQS---- 696 ++ +T+ G + F + + + + G I++ + + ++ Sbjct: 862 TVILVTKNGMGIKFLATAINPMGRIASGVTGISLKDDNKVIFGKVIPPSEGIDDKTLEAY 921 Query: 697 -----------TLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDS 741 + K+K K R RG+ + L D + Sbjct: 922 NDYKKELTSNYEKLVLESKQKEKAEVNIEDIKLQNRAGRGSSLMILVLEDYIRDVI 977 >UniRef50_P73077 DNA topoisomerase 4 subunit A n=5 Tax=Bacteria RepID=PARC_SYNY3 Length = 920 Score = 648 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 239/780 (30%), Positives = 387/780 (49%), Gaps = 72/780 (9%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 S LHE E +YL Y+M VI+ RALP + DGLKPV RRI+YAM ELGL F+ Sbjct: 8 SGQIIPTDLHEEMERSYLEYAMSVIVGRALPDVRDGLKPVHRRILYAMYELGLTPDRPFR 67 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K AR VGDVLGKYHPHGD + Y+A+V M Q FS RYPL+ G GN+G+ D AAMRYT Sbjct: 68 KCARVVGDVLGKYHPHGDQSVYDALVRMVQDFSSRYPLLAGHGNFGSVD-NDPPAAMRYT 126 Query: 122 ESRLSKYSE-LLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 E+RL+ + +L + + D+ NFD + +EP ++PA+LP +LLNG +GIAVGMAT I Sbjct: 127 ETRLAPIAMGAMLEGISEAIVDFTGNFDNSQEEPTVVPAQLPLLLLNGCSGIAVGMATSI 186 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL EV I LI++P + +L ++ GPD+PT I+ S I + Y+ GRG + Sbjct: 187 PPHNLGEVVDGLIGLINKPDLSDQELFKLIPGPDFPTGGHILDS-EGILQAYQTGRGLIP 245 Query: 241 MRAVWKKE-----------DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDES 289 +R V E A+VI+ LP QV+ A +E+IA+ + + KL + DLRDES Sbjct: 246 VRGVSHIETIRGEKKRSHNRTAIVITELPFQVNKAAWIEKIASLVNDGKLDGISDLRDES 305 Query: 290 DHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSE 349 D ++ + R + + ++ L+ T L+ ++ + + ++ +P +L +IL E Sbjct: 306 DRTGMRVVIELKR--DAEPNAILQKLYRMTPLQSNFGVIF-LALVNNQPVQMSLRQILQE 362 Query: 350 WLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSR 406 +L FR DT+ R+ L + +RL +L GLL+ N+D +IEI+R + K L R Sbjct: 363 FLQFREDTLLRQYENELGENRRRLELLTGLLIGLENLDALIEILRFAADGTTAKIQLQER 422 Query: 407 FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ 466 G++ Q +AIL + +R + LE K++ E ++L + +QL+ ++ ++ LKKEL+ Sbjct: 423 LGISLQQGDAILGMPMRRITGLEREKLQQEHTDLAQRIEQLETLIGDRQERLKALKKELR 482 Query: 467 ADAQAYGDDRRSPLQEREEAKAMS---EHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGL 523 + + D+RR+ + + AK D LP + V SQ SA ++D+PG Sbjct: 483 GLKKKFADERRTKILQGMPAKIEPLPVNQDPLPEATIPPVESQ-----SAPEEELDSPGE 537 Query: 524 NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVD 583 + + +++ P P+A E L L T Sbjct: 538 PEQE------QLVLENSSP------------------PTADSAPEAKQDDLNLAVKPTPK 573 Query: 584 HMLMESDDQKLLMASDAGYGFVC-------------TFNDLVARNRAGKAL-----ITLP 625 + E+ ++A+ + V ++ N G+ +T Sbjct: 574 TVKQEAQPSPEVIATHSKLVSVAEKNPLTLFTPQTPPAEAFLSINLQGEIAWHPEELTSA 633 Query: 626 ENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDG 685 + + + L+ I G+ ++D+P L+ + + +P + Sbjct: 634 NSFEPLDQQFSIQGRETLIVIGDHGKAFPVAIADIPPLAVTRIPLLQILPKSAQRDATTV 693 Query: 686 LAQLYVLPPQ--STLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPR 743 Q ++ PP+ L + + ++KL + + G RG ++ + ++ +P Sbjct: 694 TFQGFLPPPEQPQDLLLVSQQGRVKLLAGQELQELGPRGLSLMKLKNGDLLQFAQLVTPV 753 Score = 88.8 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 33/268 (12%), Positives = 75/268 (27%), Gaps = 30/268 (11%) Query: 494 MLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSY 553 P + ++ G + A + + ++ + G+++ Sbjct: 607 QTPPAEAFLSINLQGEIAWHPEELTSANSFE-----PLDQQFSIQGRETLIVIGDHGKAF 661 Query: 554 AIDPITLPSARGQGEPLTGKLTLPPGATVDHML------MESDDQKLLMASDAGYGFVCT 607 + +P PL L + Q LL+ S G + Sbjct: 662 PVAIADIPPLAVTRIPLLQILPKSAQRDATTVTFQGFLPPPEQPQDLLLVSQQGRVKLLA 721 Query: 608 FNDLVARNRAGKALITLPENAHVMPPVVIE--------DASDMLLAITQAGRMLMFPVSD 659 +L G +L+ L + ++ + L+ T GR+L F + Sbjct: 722 GQELQELGPRGLSLMKLKNGDLLQFAQLVTPVNPASAQNPGKNLVIATSNGRLLRFDPAQ 781 Query: 660 LPQL---SKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQK 716 + +G + + + + + L + + P + + K + Sbjct: 782 VGLTCSSPSAQGQEAMRLRA------TESLVGVLMASPGDRVLLLTQAGYGKQLDLASVR 835 Query: 717 VTGERGRRGTLMRGL-QRIDRVEIDSPR 743 G G GT + + DR+ Sbjct: 836 -LGNFGELGTTVMQFTSKADRLLTMVAA 862 >UniRef50_Q83G39 DNA gyrase subunit A-like protein n=2 Tax=Tropheryma whipplei RepID=Q83G39_TROWT Length = 824 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 232/756 (30%), Positives = 384/756 (50%), Gaps = 40/756 (5%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 ++ + L ++++L Y+ VI RALP DGLKPVQRRI+Y MS +GL+ Sbjct: 18 NEKITDVDLLHQMQDSFLEYAYSVIHSRALPDARDGLKPVQRRILYTMSRMGLSPDKAHV 77 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K AR G+V+GK HPHGD+A Y+ +V M+Q F+ R PL+DG GN+G+ +D AA RYT Sbjct: 78 KCARVTGEVMGKLHPHGDAAIYDTLVRMSQDFTMRIPLIDGHGNFGSLNDGP--AASRYT 135 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+RLS+ + ++++L D+VPN+D +P++LPA LPN+++NG++GIAVGMAT IP Sbjct: 136 EARLSRAAVAMINDLESNVVDFVPNYDNQFTQPEVLPALLPNLIVNGSSGIAVGMATSIP 195 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHNL+E +AAI L+ +++L+Q++ I+ GPD+PT II + ++IY G+GS ++ Sbjct: 196 PHNLQETVRAAIYLVRNRQSSLEQIMKILPGPDFPTG-SIIVGKEAFKEIYATGKGSFKI 254 Query: 242 RAVWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 RA + +VI+ LP+ V RV+E+I + ++ + D+ D SD +N + Sbjct: 255 RAKISIDYAGIGHTNLVITELPYMVGSERVIEKIKQGVNAHRIDGILDVTDLSDRKNGLK 314 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 LVI + N ++VM++L+ T LE+S+ +N + +DG+P +L++L ++ R Sbjct: 315 LVIGIKPN-FSPNEVMDNLYRHTPLEESFSVNS-VALIDGKPKTLGMLDMLKVFIDHRVC 372 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQ 413 + RR + L KRLH+++GLL+A ++ID+ I IIRN E + LM +T Q Sbjct: 373 VITRRSKFYLATHKKRLHMIDGLLLALVDIDKTISIIRNSEGIKEARKNLMKCLNVTRDQ 432 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 AE IL+++L L KL +K++ EQ EL K L+ IL+ K++ +L EL+ AQ Sbjct: 433 AEYILDIRLNMLTKLSTIKLQSEQEELRKTTQDLEEILSDPNKIDAILIDELKKVAQRLP 492 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DS-- 530 RR+ L+ ++K P +VL+ G++ + + ++ L+ D Sbjct: 493 SPRRTILESSVKSKKQK-----TDYPRQVVLTTNGFIFTIEVNNDLISELSQPETFDMAF 547 Query: 531 ---------FKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGAT 581 K+++ + + S G+ PI LP L L Sbjct: 548 NTHSEPLRVVKSSIVCGVRSRIGALTSAGKVIPFTPIGLPVLDSGFVTAKSFLGLENDEE 607 Query: 582 VDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASD 641 + + L +A+ +G T R +ITL V+ + Sbjct: 608 AVLLFELHQKESLAIATSSGIVKRVTPAIWPDRTER---VITLSAGDRVVGAARGVSSCG 664 Query: 642 MLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI 700 + IT G +L + + ++ +G + + + + ++ Y + Sbjct: 665 YFVFITAKGNLLHYSAGLVNPQNRPARGVAGVTLKDDD----DRVISFGYTEDVDRANVL 720 Query: 701 HVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDR 736 V KR R Q T R RG + + Sbjct: 721 TVSKRMTTSRLSSYQ--TRGRATRGVQCHKFLKGEE 754 >UniRef50_Q98QI8 TOPOISOMERASE IV SUBUNIT A n=1 Tax=Mycoplasma pulmonis RepID=Q98QI8_MYCPU Length = 939 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 207/746 (27%), Positives = 368/746 (49%), Gaps = 31/746 (4%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 +++ +L + + + YS Y+I RALP DGLKPVQRRI+Y+M +L L F Sbjct: 12 INEKLISQSLDQIMSDRFGRYSKYIIQQRALPDARDGLKPVQRRILYSMMDLKLWNDKPF 71 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VGDV+GKYHPHGDS+ YEAMV MAQ + PL+ GN G+ D AAMRY Sbjct: 72 KKSARIVGDVIGKYHPHGDSSIYEAMVRMAQDWKMNIPLIQMHGNIGSID-DDPAAAMRY 130 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TESRL++ S L+L + + + PNFD + +EP +LPA +PN+LLNG GIA G AT++ Sbjct: 131 TESRLAEISNLMLEGIEKNVVSFAPNFDDSEKEPTVLPALIPNLLLNGARGIAAGFATEM 190 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL E+ AAIA I ++ L+ ++GPD+PT +I + I + ++ GRG + Sbjct: 191 PPHNLGEILDAAIAKIRISSLKVEDLIKYIKGPDFPTGG-VIHGLSGIVQAFKEGRGRIS 249 Query: 241 MRAVWK----KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 + ++ + ++I+ +P+ ++++ I + N+K+ + ++ D+SD + + Sbjct: 250 LTCKYEHINLPDKNEILITQIPYGSVKSKIVRDIDEIIVNQKIDGIKEVLDQSDRDGISI 309 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRD 356 + + + + + +M +LF+ T+L+ Y N N+ +G P + NL E+L ++ + Sbjct: 310 AIKLEKK--ANHESIMKYLFSKTELQVFYNYN-NIAIKNGSPTLLNLNELLDIYIEHLKT 366 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK----PALMSRFGLTET 412 + L + L K RL ++EG L D++I IR ++ K L+ F ++ Sbjct: 367 INVKILEFDLNKARLRLEVVEGFLRVAQITDQIIATIRASNDGKKGVIEDLIRIFAFSQR 426 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QA AI EL+L L++ + + E+ EL K+ + + IL S+ ++ L L+ + Y Sbjct: 427 QATAIAELRLYRLSQTDFYLYQNEKEELIKQINDFEKILNSDNELKTYLVNILKKIKKTY 486 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP---GLNYKAGD 529 R++ + + E + +++ E + LSQ G+++ K D Sbjct: 487 PTPRKTQIIDEELKRNYDIEELVVDEKCYVSLSQDGYLKRVSSKTFKTNDFASFGLKEND 546 Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLM 587 + K + ++ G I + + + G + + + ++L+ Sbjct: 547 NLSFLSKATTKDKLLIFSDHGNYAIIPIYKIEEQKSKSFGVHINDFVYFNSYEKIIYVLV 606 Query: 588 ESD---DQKLLMASDAGYGFVCTFNDLVARNRAGK-ALITLPENAHVMPPVVIEDASDML 643 ++ D + + + G G + N + ++ ITL ++ ++ + + Sbjct: 607 VNEFSQDYYISLVTQKGLGKRVSLNKFLITRQSKISNAITLKDDDRLVDVR-VSKGKQNI 665 Query: 644 LAITQAGRMLMFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHV 702 + T ++ F LP +S KG+GNK+I + E ++ + + L + Sbjct: 666 ILFTNFNNVVKFSEDALPVISTKGQGNKMIQLSEGEK------VSAMSITKTTDNLILIT 719 Query: 703 GKRKIKLRPEELQKVTGERGRRGTLM 728 K + P K T R +G + Sbjct: 720 NKNNLIKVPTSHFKFT-PRAAKGKRI 744 >UniRef50_Q7NB60 ParC/GyrA n=1 Tax=Mycoplasma gallisepticum RepID=Q7NB60_MYCGA Length = 797 Score = 640 bits (1652), Expect = 0.0, Method: Composition-based stats. Identities = 214/741 (28%), Positives = 380/741 (51%), Gaps = 21/741 (2%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + L + ++ Y+ Y+I +RALP I DGLKPVQRR++Y M LGL + ++KS Sbjct: 6 KVFQKDLDDIMSLSFGRYAKYIIQERALPDIRDGLKPVQRRVLYGMYNLGLYYNKSYRKS 65 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 A TVG+V+GK+HPHGDS+ YEA+V M Q + PL+D QGN G+ D + AAMRYTE+ Sbjct: 66 AATVGEVIGKFHPHGDSSIYEALVRMTQSWKNNIPLIDMQGNNGSIDG-DNAAAMRYTEA 124 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 RLS Y L+L + + T ++V NFD + EP +LP+ LPN+L+NG+TGIA G AT+IPP Sbjct: 125 RLSHYGNLMLENINKETVNFVNNFDDSEVEPTILPSLLPNLLVNGSTGIAAGYATNIPPF 184 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL+E+ I ID P L+ +L ++ GPD+PT II I+ Y G+G + +RA Sbjct: 185 NLKELIDVIIHRIDSPNCKLESILKLMPGPDFPTGG-IILDDDGIKNAYLTGKGKIVIRA 243 Query: 244 VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 E+ +V++ +P + + A ++ I + KLP ++++RDESD ++ Sbjct: 244 KIVNENDQLVVTDIPFETNKASIIRSIEEILEANKLPQLEEVRDESDRFGIRVVLQTNTK 303 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLN 363 + + + N+L+ T L+ +Y N N++ +P ++ L +L +R ++ Sbjct: 304 DEKVLATIKNYLYKYTQLQINYSFN-NVVIDQKKPIQMSIFNYLDSYLNHAYTILRNAIS 362 Query: 364 YRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQAEAILEL 420 + L+K KRL ++ GL+ A ID++I II+ + L++++ + QAEAI+ L Sbjct: 363 FDLKKDQKRLEVINGLIKATSIIDQIILIIKKSKDKQDAINNLINKYQFSAIQAEAIVSL 422 Query: 421 KLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPL 480 +L L + + ++ E+ L+ Q Q +L + +N+ LK+ L++ + + RRS + Sbjct: 423 RLYRLTNTDILALKEEKKSLDTNIKQYQLLLKDQNALNDHLKEILRSYKKLFNTKRRSTI 482 Query: 481 QEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAK---GHDIDAPGLNYKAGDSFKAAVKG 537 E ++E ++ + + +V S G +++ ++ L K D +K Sbjct: 483 GGNIEKLVINEASIIEKKELYLVSSVDGLIKTIAYDQNKQLNPTSLKIKQDDYLSDLIKV 542 Query: 538 KSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLMESD-DQKL 594 S V F+ + G I+ + A+ + G + T+ + ++ SD + ++ Sbjct: 543 SSLNKVAFITNYGNVVVINAHKIKQAKPREIGMDINELTTIKDNEKIVKLVELSDQNDRI 602 Query: 595 LMASDAGYGFVCTFNDLVARNR-AGKALITLPENAHVMPPVVIEDASDMLLAITQAGRML 653 ++ S G + NDLV ++L ++ ++ +I D + L+ IT+ L Sbjct: 603 VLVSKYGMIKQISVNDLVNIKSTKPTTCMSLKDDDELVCANLISDPNAELIIITKNAYAL 662 Query: 654 MFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPE 712 F ++++ K G + I + + + G D + L + K+ KL+ Sbjct: 663 RFFINEVNLTGLKSMGVRAIKLKTNDQVIGFDQIK-----NSIDQLVLVKNKQIKKLKVS 717 Query: 713 ELQKVTGERGRRGTLMRGLQR 733 ++ R +G + + Sbjct: 718 LIEN--QSRANQGKSLGLGKD 736 >UniRef50_D0RNU6 DNA gyrase subunit A n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNU6_9RICK Length = 746 Score = 628 bits (1620), Expect = e-178, Method: Composition-based stats. Identities = 239/749 (31%), Positives = 411/749 (54%), Gaps = 32/749 (4%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 MS + L YL Y++ I RALP + DGLKPV RR++YAM L L+ ++F Sbjct: 1 MSKNIVKDELQNQFAKKYLAYALSTITQRALPDVRDGLKPVHRRLIYAMYLLNLSPKSQF 60 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VGDV+GK+HPHGD + Y+A+V +AQ FS YPLV+GQGN+G D + AAMRY Sbjct: 61 KKSARVVGDVIGKFHPHGDQSVYDALVRLAQDFSTHYPLVNGQGNFGNVDG-DNAAAMRY 119 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE++L+K SE LL+++ + T ++ +DG L EP++LP++ PNIL NG++GIAVGMAT I Sbjct: 120 TETKLTKTSEYLLADIEEETVNFKKTYDGELDEPEILPSQFPNILANGSSGIAVGMATSI 179 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHN++E+ +A I L D P ++ LL ++GPD+PT + + EI K Y+ GRG Sbjct: 180 PPHNVQEICEALIYLNDNPNCSIKDLLKFIKGPDFPTGGILNEDKKEIFKAYKTGRGFFE 239 Query: 241 MRAVWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 +++ +K ED + ++ +P+ V+ ++++E++A + NKK ++D + DESD + Sbjct: 240 IKSKYKVEDLGRGLYQIAVTEIPYSVNKSKLIEKLAGIIINKKNKLLDHVSDESDEK--I 297 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 R+V+ P++ V+ + +MN LF ++L+ +N+N++ P V NL EIL L R Sbjct: 298 RIVLRPKNRNVNPEDLMNSLFEQSELKNKIFLNMNVLNEKNEPKVMNLKEILKSLLKHRY 357 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAE 415 + ++N++L+K+ +RL IL+G ++ + N++++I+IIRN +PK L+ ++ T Q + Sbjct: 358 IILNNKINFKLKKIKRRLEILKGFIIVYKNLNQIIKIIRNSKDPKKELIKKYKFTLIQVD 417 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD- 474 +ILE++LR+L K+EE+ I+ E LE E+ +L IL S+ + E +GD Sbjct: 418 SILEMRLRNLKKIEELDIKKEFKNLELEKKRLSKILNSKTLQRKEINNEYTEVINEFGDN 477 Query: 475 ----DRRSPLQEREEAKAMSEHDMLPS-EPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGD 529 RRS L++ + L E + + L +++S K + K D Sbjct: 478 STYGPRRSILEKFVKFTDDELESKLEVIENINVSLINEKFLKSKK----GTYKRSEKNSD 533 Query: 530 SFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMES 589 + K++ + + + G+SY ++ L +G ++ L L + + + Sbjct: 534 DVSLIINCKTSDQICLLSNIGKSYILNCSNLKFGSTKGFLISSYLKLKDEEKIVDLFVYK 593 Query: 590 DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI--- 646 + Q+++++S GYGF DL ++GK + + +N +I D + + Sbjct: 594 EKQEIILSSQNGYGFFVKSEDLFTNKKSGKKIFNIKKNDQFYGSCLINKEKDKFIVLFLK 653 Query: 647 -TQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKR 705 ++++F + ++P L KG G + + L ++ S Sbjct: 654 DNLKYKLIIFELKEVPYLQKGSGVILFKTKGFKLNNFCSIDDNLSLIDIDS--------- 704 Query: 706 KIKLRPEELQKVTGERGRRGTLMRGLQRI 734 K+ L+ +RG+ G +++ + I Sbjct: 705 -KKIELGNLKSFLSKRGKSGKVIKLKKEI 732 >UniRef50_A5IXX2 Topoisomerase IV subunit A n=2 Tax=Mycoplasma RepID=A5IXX2_MYCAP Length = 861 Score = 625 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 207/750 (27%), Positives = 367/750 (48%), Gaps = 31/750 (4%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + L + + YS YVI RALP + DGLKPVQRRI+Y+M +LGL + FKKS Sbjct: 15 KIIQENLDTVVADRFSRYSKYVIQQRALPDVRDGLKPVQRRILYSMYDLGLQNNKPFKKS 74 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VGDV+GKYHPHGD++ Y+AMV M Q + + LV+ GN G+ D AAMRYTE Sbjct: 75 ARVVGDVIGKYHPHGDTSIYDAMVRMGQEWKMGHTLVEMHGNVGSID-DDPAAAMRYTEV 133 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 RLS+ + ++ ++ + T + PNFD + +EP ++P +PN+L+NG+TGIA G AT++PPH Sbjct: 134 RLSEIANYVIGDIRKNTVKFAPNFDDSEKEPVVMPVLIPNLLINGSTGIASGFATEMPPH 193 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 NL E+ AAIA + P L +L I+QGPD+PT II I + +E G+G + + + Sbjct: 194 NLNEILDAAIAKVKNPAIELTKLAKIIQGPDFPTGG-IIYGTEGIHEAFERGKGRITLAS 252 Query: 244 VWKKEDGA----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 + + + I+ +P+ V ++++ +I + ++++ + +++D++D L+ Sbjct: 253 RYNVYTDSKYKYIEITEIPYGVVKSKLVHEIDLIVDSEEVAGLLEVKDQTDRNGINILIT 312 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 + + D + ++N+LF T + Y N N++ + P + +L +L +D Sbjct: 313 LDKE--ADENVIVNYLFLKTQMRIYYNYN-NVVIDNYTPKTLGISALLDAYLKHVKDIKI 369 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKP----ALMSRFGLTETQAE 415 + + + L K RL I+ G L D+VIE+IR + K LMS F T QA Sbjct: 370 KTIEFDLIKHKARLEIVIGFLKVAKITDKVIEVIRKSENSKQGVIDNLMSAFDFTLNQAT 429 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 AI EL+L L+K +E E+ ELE++ Q + +L + N L + +G Sbjct: 430 AIAELRLYKLSKTDEHAFLIEKEELEEKIKQCELLLNDSDEFNKYLIALFKDLKSKFGRA 489 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNY---KAGDSFK 532 RR+ ++ + ++++ D++ E V + +S+ G+++ ++ +N K D+ Sbjct: 490 RRTSIENEQIKASINQEDLVKEEQVFLGISKFGYIKKVSKKIYESNLINTYGIKEDDNIL 549 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLMESD 590 S ++ + G + + ++ + G L+ + L G + + SD Sbjct: 550 FYDNASSLDKLLLFTNFGNYAYLPVFKVHESKWKEFGTHLSDFVDLTSGEELVSAIKVSD 609 Query: 591 ---DQKLLMASDAGYGFVCTFNDLVARN-RAGKALITLPENAHVMPPVVIEDASDMLLAI 646 + + + G G + + L + ++ + + +L I Sbjct: 610 FDSSNYVCLFTKKGQGKKVLLKEFDVSRFSKTFVAMKLKSDDELIGA-KLSNGLKDVLLI 668 Query: 647 TQAGRMLMFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKR 705 T+ ++ +++P K GNK + + + A V S + I+ R Sbjct: 669 TKNNFASLYSENEVPIYGLKSNGNKACYLANYDELS-----AFAVVSSNDSVVLINANNR 723 Query: 706 KIKLRPEELQKVTGERGRRGTLMRGLQRID 735 + E+ KV + +G + R + Sbjct: 724 AKVVNVSEITKV--SKANKGVALFAKSRTN 751 >UniRef50_C3CV72 DNA topoisomerase n=1 Tax=Bacillus thuringiensis Bt407 RepID=C3CV72_BACTU Length = 740 Score = 625 bits (1611), Expect = e-177, Method: Composition-based stats. Identities = 229/759 (30%), Positives = 399/759 (52%), Gaps = 54/759 (7%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 M E ++ + ++++++Y++ V+ DRALP + DGLKPV RRI+YAM +LG+ + Sbjct: 1 MGGKIETISYSKEMKSSFIDYALTVVTDRALPDVRDGLKPVHRRILYAMGDLGMYPDKAY 60 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VG+V+GKYHPHGDSA YE+MV AQ F PL+DG GN+G+ D S AAMRY Sbjct: 61 KKSARIVGEVIGKYHPHGDSAVYESMVKQAQDFVKNAPLIDGHGNFGSVDG-DSAAAMRY 119 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RLS + ++ +L +G D+ NFD + +EP +LPA++PN+L+NG GIAVGMA Sbjct: 120 TEARLSPVAMEMIQDLSKGVVDFRDNFDASEREPVVLPAKVPNLLVNGGVGIAVGMAYKT 179 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPH + V IA D+ ++ L+DI++ PDYP+ IIT++ E+R +Y G G Sbjct: 180 PPHGVNSVVDTLIAYADKQDIDIESLIDIIEAPDYPSGG-IITNKNELRDLYRTGIGKAV 238 Query: 241 MRAVWKKED-----GAVVISALPHQV--SGARVLEQIAAQMRNKKLPMVDDLRDESDHEN 293 +RA ED +V+ +P+ S + ++ + KKL + ++ DESD + Sbjct: 239 IRAKIDIEDAGYGRKNLVVKEIPYPYSGSKTNLTYKLITMVIEKKLEEIVNVTDESDKDG 298 Query: 294 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVF 353 ++ V + VD+D ++N L++ T L+ S ++ ++G P NL + + F Sbjct: 299 IRIVLEVKK--GVDIDNLLNKLYSKTPLQSSESYQY-LVLVNGVPTTINLKDYCKHYFDF 355 Query: 354 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMS----- 405 +++ R+R Y L K R ILEGL+ A +D +IE++R E K LM Sbjct: 356 QKEITRKRYEYLLSKAQVRKEILEGLVKAEEMMDTIIEMLRGAKKSKEAKVCLMEGNTES 415 Query: 406 -------------RFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILA 452 +F TE QA+AIL+++L+ L LE ++ E E+ E ++ + +L Sbjct: 416 ISFKTKKHENIAKKFAFTEKQAQAILDMRLQKLIGLEVEQLNQEYKEVLAEMEEYELVLG 475 Query: 453 SERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS 512 SE++M ++KK L+ + +G +RR+ +Q E K + + + E V +++ + G+ +S Sbjct: 476 SEKEMLKVIKKYLRGFKKDFGRERRTEIQ---EKKTIEYVEEIKEEDVWVLIDKFGYTKS 532 Query: 513 AKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPL 570 ++ + +K + K+ + + GR Y I +P + +G P+ Sbjct: 533 VDTISVERSSEETLSE--YKQEILTKNTSKLSVFTNQGRLYQIKLADIPKVKIKDKGVPI 590 Query: 571 TGKLTLPPGATVDHMLMES--DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENA 628 + ++ + + ++++M + G ++L+ +R+ L E+ Sbjct: 591 QRLGKMKKNEYPLYITTNTELETERVIMLTKTGLIKQTLCSELI-SSRSVVVATKLEEDD 649 Query: 629 HVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLA 687 V+ I + + +L ++ G +L F ++++P L K KG K +++ ED + Sbjct: 650 EVIQITPINEVDEDVLVFSKKGYILRFSINEIPVLRKNAKGVKAVSLME------EDVIE 703 Query: 688 QLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGT 726 +Y+L + + ++I+L E RG++G Sbjct: 704 GVYILNENNKDVKQLNGKQIELSKVE----RKTRGKKGI 738 >UniRef50_B5ZBW2 DNA topoisomerase IV, A subunit family protein n=22 Tax=Ureaplasma RepID=B5ZBW2_UREU1 Length = 855 Score = 624 bits (1610), Expect = e-177, Method: Composition-based stats. Identities = 226/737 (30%), Positives = 385/737 (52%), Gaps = 35/737 (4%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 L +Y Y+ Y+I DRALP I DGLKPVQRRI+YAMSELG+ +KKS Sbjct: 7 KIINTPLDNIVGESYAKYAKYIIQDRALPDIRDGLKPVQRRILYAMSELGIFHDKPYKKS 66 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 ARTVG+V+GKYHPHGDS+ YEAMV M+Q + L+D GN G+ D + AAMRYTE+ Sbjct: 67 ARTVGEVIGKYHPHGDSSIYEAMVRMSQDWKNNLCLLDIHGNKGSIDG-DNAAAMRYTET 125 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 RLSK + ++L+ L + + PNFD + +EP +LP+ PN+L+NG TGIA G AT IPPH Sbjct: 126 RLSKIASVMLTNLKKDVVKFSPNFDDSEKEPSILPSLFPNLLINGATGIASGYATSIPPH 185 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 N EV A I ID P ++++L+ I PD+PT EI ++ G G +RA Sbjct: 186 NPNEVFDALIYRIDHPDCSIEKLIKICPAPDFPTGGEI-HDLNGCANAHKTGEGKFVIRA 244 Query: 244 VWKKED-----GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + + ++I+++P++ + A ++++I + NK++ + ++RDESD + + ++ Sbjct: 245 SIEFKTSEAKINQIIINSIPYETNKALIIKEIEDIIYNKEVAGLIEVRDESDAKGVSIII 304 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + V+++ V N+L+ T LE SY I + P + +L L + D + Sbjct: 305 DTKK--DVNLENVKNYLYKKTSLEISYNTKFIAI-VHRTPTLVSLSTYLDAQINHSLDVI 361 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGLTETQAE 415 + Y L KVL R+ I+EGL+ IDE+I+IIR D + K AL+ F T QAE Sbjct: 362 NKVDLYDLNKVLLRIEIVEGLIKCVDLIDEIIKIIRASDSRQDAKNALIQTFAFTNNQAE 421 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 AI+ ++L +L + + +R E L+++ L+ + S + N LK+++ + +G Sbjct: 422 AIIMMRLHNLTRTDIFDLRNEWESLQQQAKILKERIKSLQVRKNYLKQKMIEFKKEFGYQ 481 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP---GLNYKAGDSFK 532 R++ L + ++E M+ + + +V+S+ G+++ ++ L K D Sbjct: 482 RKTKLFDEFIKAEVNEDQMIEKQSLNLVISRDGYIKIVSKKSFESSKYDELGLKTNDLLF 541 Query: 533 AAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLMES- 589 S+ ++ + S + + + R + GE L V + + + Sbjct: 542 YHNVINSHDRILIITSKAKLINLIAHKISCMRWKDVGEHLNNYAKFDANEKVVAVYVCNE 601 Query: 590 ----DDQKLLMASDAGYGFVCTFNDL-VARNRAGKALITLPENAHVMPPVVI-EDASDML 643 D+ +L++ S N+L + +N +++ L EN ++ +I +D + + Sbjct: 602 QFKVDEHQLVLGSKLNLIKRIELNELDLNKNSKQISIMKLNENDGLISANLIKKDHNQFV 661 Query: 644 LAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQST---LT 699 +AI++ G +LMF V ++ L++ KG KI+ + D ++ + ++P L Sbjct: 662 VAISKLGLVLMFLVHEINCLNRLAKGIKIMKLKPN------DEISSILIVPNNGYSIQLF 715 Query: 700 IHVGKRKIKLRPEELQK 716 + G + + +L K Sbjct: 716 LDQGNKCFSISELKLSK 732 >UniRef50_Q6KHI4 Topoisomerase IV subunit A n=1 Tax=Mycoplasma mobile RepID=Q6KHI4_MYCMO Length = 858 Score = 624 bits (1609), Expect = e-177, Method: Composition-based stats. Identities = 217/734 (29%), Positives = 365/734 (49%), Gaps = 24/734 (3%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + D +L N Y Y+ Y+I RALP + DGLKPVQRRI+Y+M ELGL + F Sbjct: 6 LKDKFLLQSLDGIMSNRYGVYAKYIIQQRALPDVRDGLKPVQRRILYSMHELGLTSEKPF 65 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VGDV+GKYHPHGDS+ YEAMV M+Q + PL+ GN G+ D AAMRY Sbjct: 66 KKSARVVGDVIGKYHPHGDSSIYEAMVRMSQEWKMNVPLIQMHGNIGSID-DDPAAAMRY 124 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RLSK S LLLS++ T + NFD + +EP +LPA PN+L+NG GIA G AT+I Sbjct: 125 TEARLSKISSLLLSDIKSDTVSFSLNFDDSEKEPTVLPAFFPNLLVNGARGIAAGFATEI 184 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL EV IA I P ++ L I++GPD+PT I + +GRG + Sbjct: 185 PPHNLGEVIDGIIAKIKNPNIKIETLNTIIKGPDFPTGGIIYGIDGIKEAAF-SGRGRIT 243 Query: 241 MRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 + + ++ +VI+ +P+ V ++++ QI +K + ++++RDE++ + ++ + Sbjct: 244 ITSKYEVHKNQIVITEIPYGVVKSKLVRQIDEINLDKNIGGMNEVRDETNRDGIKIVIDL 303 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360 D ++M L T+L+ Y N N+ + P + NL +++ +L + Sbjct: 304 --EAGADASKIMKFLMQKTELQLYYSYN-NIAIHNNAPVLMNLHDLIQAFLDHVKVIQTN 360 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK----PALMSRFGLTETQAEA 416 ++N+ LEK+ KRL I+EG + D+VIE+IR + K L+ F +E QAE+ Sbjct: 361 KINFELEKLSKRLEIIEGFIKLTEISDQVIEMIRKSEGSKVGVVENLIKIFNFSEIQAES 420 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDR 476 I L+L L+K + + E+ ELE + L+ +L+SE + N L K + + Y R Sbjct: 421 IANLRLYRLSKTDVEEFIKEKQELETRINFLKTLLSSESEFNAELIKIFKDIKKTYATPR 480 Query: 477 RSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNY---KAGDSFKA 533 ++ ++++ +S D++ +E + +S+ G+++ D+ + K D+ Sbjct: 481 KTEIKDQALKLDVSLSDLIQAEETFVGISRDGYIKRFNQKIHDSNEMQTYLLKEDDALIF 540 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLMESD- 590 K + ++ + G +I + + + G L TL P + +L D Sbjct: 541 LSKTLTTGKLLIFTNQGNYISIPIFKIAEEKWKNLGIHLNDFATLLPNEFLIKVLYVDDF 600 Query: 591 --DQKLLMASDAGYGFVCTFNDLVARN-RAGKALITL-PENAHVMPPVVIEDASDMLLAI 646 D + + + G+G + I + ++ + D D+LL Sbjct: 601 SKDFSITLITKKGFGKKVQLPEFEVSRENKSYPAIKFKKDGDELLNAFITNDRLDILLVN 660 Query: 647 TQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRK 706 T+ + F +D K G K + ++ A + A + + + + Sbjct: 661 TKL-EVYKFSENDF----KTYGIKAAGVKISDNATKFEISAAIAYSQNDTLVFLTESGHA 715 Query: 707 IKLRPEELQKVTGE 720 K+ P+++ + + Sbjct: 716 RKINPKKVDILNQK 729 >UniRef50_C4Z0V3 DNA gyrase subunit A n=29 Tax=Bacteria RepID=C4Z0V3_EUBE2 Length = 769 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 221/788 (28%), Positives = 379/788 (48%), Gaps = 79/788 (10%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 M++ R E + +Y++YSM VI RALP + DGLKPVQRR++YAM LGLN Sbjct: 1 MAEKIIRTEYSEVMQKSYIDYSMSVITARALPDVRDGLKPVQRRVLYAMDRLGLNYDKPH 60 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 +KSAR VGD +GKYHPHGDS+ YE +V+++Q F LVDG GN+G+ + AAMRY Sbjct: 61 RKSARIVGDTMGKYHPHGDSSIYETLVVLSQDFKKGMALVDGHGNFGSIEG-DGAAAMRY 119 Query: 121 TESRLSKYSELL-LSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 179 TE++L K+++ + L++L + D+VPNFD T +EP++LP R+PN+L+NG GIAVGM T+ Sbjct: 120 TEAKLKKFTQDVYLADLDKNVVDFVPNFDETEKEPEVLPVRVPNLLVNGADGIAVGMTTN 179 Query: 180 IPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSV 239 IPPHNL EV A A +D T D+L+ + GPD+PT +I ++E+ IYE G G + Sbjct: 180 IPPHNLSEVVDAVCAYMDNEDITTDELMQLCPGPDFPTGGIVIN-KSELGAIYETGTGKI 238 Query: 240 RMRAVWKK-------EDGAVVISALPH---QVSGARVLEQIAAQMRNKKLPMVDDLRDES 289 ++R E +VI+ +P+ + + + + + + KK + D+ +ES Sbjct: 239 KLRGKVIFEPAKNRSEKDKLVITEIPYTMIGANIGKFISDVVSLIETKKTTDIVDISNES 298 Query: 290 DHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSE 349 E ++ + ++ D+ + N L+ T LE ++ +N+ I +DGRP + +I+ Sbjct: 299 SKEGIRIVLELKKN--ADVKNLENLLYKKTKLEDTFGVNMLAI-VDGRPETLGIKDIIKH 355 Query: 350 WLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLN---------------------IDE 388 + F+ + R+ LEK I EGL+ A ++ Sbjct: 356 HINFQYELATRKYTTLLEKEKANREIKEGLIRACDIIDLIIEILRGSANLKMAKDCLVNG 415 Query: 389 VIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQ 448 +E I+ + E + TE QA AILE++L L LE + ++ E E K+ ++ + Sbjct: 416 NVEGIKFKSEQSKKQAAGLDFTERQAGAILEMRLYKLIGLEILNLQKEYDECVKKIEKYE 475 Query: 449 GILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMG 508 IL S ++M ++K +L + YG +RR+ +++ E A+ E +P V ++ + G Sbjct: 476 KILGSRKEMAKVIKADLLNIKKEYGVERRTVIEDGE--AAVFEEKKIPEMEVMFIMDRFG 533 Query: 509 WVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQ 566 + R+ + + K + + + TG + + LP R + Sbjct: 534 YARTIDMAAFERNKDAVFNEN--KYVIPVMNTDKICIFTDTGDLHQLKIKDLPFTKFRDK 591 Query: 567 GEPLTGKLTLPPG-ATVDHMLMES--DDQKLLMASDAGYGFVCTFNDLVARNRAGKALIT 623 G P+ + ++ +QK+L + G + + R A Sbjct: 592 GTPIDNLCNYDSSKEIIVYITPFERLKNQKMLFVTRQGMMKLVDSEEFQVAKRT-VACTK 650 Query: 624 LPENAHVMPP---------------------VVIEDASDMLLAITQAGRMLMFPVSDLPQ 662 L ++ ++ + +++ ++ T+ G L FP++D+P Sbjct: 651 LADDDKLIGMYSTDARVEIYSKFSLDGEIKEEEVVESNQNVIVQTENGVFLKFPLTDIPM 710 Query: 663 LSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGER 721 K G + I + +D + +++L T+ + I + T R Sbjct: 711 KKKSAVGVRGIKLSK------DDYIEDVFLLTEGDEFTMEYKGKSISFAKMK----TAHR 760 Query: 722 GRRGTLMR 729 +GT +R Sbjct: 761 DTKGTKIR 768 >UniRef50_B3PLT5 Topoiosmerase IV subunit A n=1 Tax=Mycoplasma arthritidis 158L3-1 RepID=B3PLT5_MYCA5 Length = 949 Score = 618 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 213/749 (28%), Positives = 368/749 (49%), Gaps = 35/749 (4%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 +++ + + + YS Y+I RA+P DGLKPVQRRI+Y+M L L + F Sbjct: 12 LTETIIEKNMVDVMSERFGRYSKYIIQQRAIPDARDGLKPVQRRILYSMYGLKLYNNQAF 71 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 +KSA+ VG+V+G+YHPHGDS+ YEA+V M+Q + +PL++ GN G+ D AAMRY Sbjct: 72 RKSAKIVGEVMGRYHPHGDSSIYEALVRMSQEWKSNFPLIEMHGNKGSID-DDPAAAMRY 130 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TESRL K SEL+L +L + PNFD T EP +LP+ +PN+L+NG+ GIA G AT+I Sbjct: 131 TESRLEKISELILKDLDRKVVAMAPNFDDTEYEPVVLPSLIPNLLINGSKGIAAGFATEI 190 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL EV A I LI P +L++L IVQGPD+PT +I I + +E G+G + Sbjct: 191 PPHNLSEVIDATIKLIKNPLISLEELKQIVQGPDFPTGG-VIHGIEGIAQAFETGQGKIN 249 Query: 241 MRAVWKK---EDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHE 292 + + ++ E+ + I P V ++++ I + +K + V ++RD+S+ E Sbjct: 250 ISSRYRFVYAENKPSKIIGIEIYETPFGVIKSKLVADIDFLVIDKTINGVKEVRDQSNRE 309 Query: 293 NPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLV 352 + + + + + ++N+L + TDL SY N+ I + P + NL +L +L Sbjct: 310 G--ISIYLELEDEANAEAIINYLMSKTDLRISYNYNMVAI-HENSPKLMNLQMLLFTYLS 366 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK----PALMSRFG 408 +D + + + L+K RL I++G + DEVI +I+N D K AL FG Sbjct: 367 HLKDINTKGIEFDLKKYEIRLEIVQGFIKVSEISDEVIRVIKNSDNSKKGVIEALEKTFG 426 Query: 409 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 T QA AI EL+L L+K+++++ + E EL + + + +L + + + + ++L+ Sbjct: 427 FTNIQATAIAELRLYKLSKMDQLEFQNEAKELAIKIARCKELLENPNEFDKFIIEQLKDI 486 Query: 469 AQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI---DAPGLNY 525 + Y R S + + + ++ + +E LS+ G+++ G Sbjct: 487 KKEYAKPRFSEISQDKIRTEINTKLLAKNEDFYFFLSKEGYIKRISKKAFSSNGFSGFKL 546 Query: 526 KAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVD 583 K D+ K S ++F + G + ID TL + G ++ + L + Sbjct: 547 KDNDAIFYYDKINSLSKLIFFTNLGNYFIIDAHTLKENGWKDIGNHISSLVALENNERII 606 Query: 584 HML---MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKA-LITLPENAHVMPPVVIEDA 639 ++ + + ++ + G + ++ A K I L N + ++ + Sbjct: 607 RVMEIESFNTYSRFIILTKKGMAKKVEIQEFDSKQIARKRSCIPLRPNDELCDVRIV-NK 665 Query: 640 SDMLLAITQAGRMLMFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTL 698 +L + G + + +P+ S K G +I + + + P++ + Sbjct: 666 EKLLFILLTGGLYYLIDENVVPEYSLKASGISLIKTD------RDQEIEAFSPISPKNKV 719 Query: 699 TIHVGKRKIKLRPEELQKVTGERGRRGTL 727 I K + K E K+ G R G + Sbjct: 720 IIMTDKGQFKRTKMETVKLVG-RSSHGKV 747 >UniRef50_P75352 DNA topoisomerase 4 subunit A n=2 Tax=Mycoplasma RepID=PARC_MYCPN Length = 789 Score = 615 bits (1587), Expect = e-174, Method: Composition-based stats. Identities = 199/742 (26%), Positives = 352/742 (47%), Gaps = 29/742 (3%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 + + ++ Y+ Y+I DRALP + DGLKPVQRRI+Y M ++GL ++ +KKSAR VG+ Sbjct: 13 IEDVFAFSFSKYAKYIIQDRALPDLRDGLKPVQRRILYGMYQMGLKPTSPYKKSARAVGE 72 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 ++GKYHPHGD++ Y+A+V M+Q + + GN G+ D + AAMRYTE+RLS Y Sbjct: 73 IMGKYHPHGDASIYDAIVRMSQAWKNNLTTISIHGNNGSIDG-DNAAAMRYTEARLSPYG 131 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 LL ++ + +V NFD + EP +LP LPN+ +NGT+GIA G AT+I PHN+ E+ Sbjct: 132 FELLKDIEKQLVPFVNNFDDSEVEPSVLPTLLPNLFINGTSGIAAGYATNIAPHNVGELL 191 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE- 248 I+ P L +L IV+GPD+PT ++ E+ IY+ G+G ++A ++ Sbjct: 192 DGLSYRIENPDCDLKAILKIVKGPDFPTGG-LVYFEQELANIYQTGKGKFVIQAKYETNT 250 Query: 249 ---DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNR 305 +VI+ +P++ A +++QI + + KL ++ + D SD ++ + Sbjct: 251 AFGQNQIVITEIPYETVKANIVKQIEELISDNKLSALESVIDSSDRSGIRIIINH--KDF 308 Query: 306 VDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYR 365 + D++M LF T L+ ++ +N +I + P LL ++L F + + Y Sbjct: 309 LSADKIMAFLFKHTQLQVNFNLNNTVIA-NRCPVRVGLLAYFDQFLAFAHELIINSAKYD 367 Query: 366 LEKVLKRLHILEGLLVAFLNIDEVIEIIR---NEDEPKPALMSRFGLTETQAEAILELKL 422 L KRL I++GL+ A IDE+I +IR ++ + K L+ ++ T QAEAI+ L+L Sbjct: 368 LALANKRLEIIKGLIKAVSMIDEIIRLIRRATDKQDAKTKLIDKYAFTLNQAEAIVSLRL 427 Query: 423 RHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQE 482 L + + EQ ELE+ + ++A + N LL+ + + + RR+ + Sbjct: 428 YQLTNTDIKVLFAEQKELEQTIQTAERLIAKPQARNQLLQAQFFQYKKQFNQPRRAQIVG 487 Query: 483 REEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQ 541 E + + + D + + V +++S G + + + +K+ D +++ Sbjct: 488 LIEKQKVQDSDFIEHKEVGLLISHDGIYFKFEPEQLAKHLVEFKSEQDQLIFGGVVQNSD 547 Query: 542 PVVFVDSTGRSYAIDPITL--PSARGQGEPLTGKLTLPPGATVDHMLMESDD----QKLL 595 V S G + + E L K L + + + D Q L+ Sbjct: 548 YFFMVTSLGNIITVPIYKTLSNTKTKMNELLAKKPILMEDEKLVLAGIVNPDKMEQQLLV 607 Query: 596 MASDAGYGFVCTFNDLVARNR-AGKALITLPENAHVMPPVVIEDAS-DMLLAITQAGRML 653 + S G + ++ + + L E ++ V ++ ++ + Sbjct: 608 LTSQCGMVKRVELSKVINTKQIKSSCCMALRERDKLVNAFVQTKGEPKLVCLVSSSNSFA 667 Query: 654 MFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPE 712 F ++P +S KG G K I + + E R + + + + I+ Sbjct: 668 TFLAEEIPIISNKGIGVKGIKLKAEEKVRF-----AMPLQDNDALVVINSDGGVYNFEVV 722 Query: 713 ELQKVTGERGRRGTLMRGLQRI 734 EL R G + + Sbjct: 723 EL--AVASRMSVGKKLIPKTKT 742 >UniRef50_Q57532 Mle gyrA intein n=207 Tax=cellular organisms RepID=GYRA_MYCLE Length = 1273 Score = 614 bits (1584), Expect = e-174, Method: Composition-based stats. Identities = 187/659 (28%), Positives = 320/659 (48%), Gaps = 43/659 (6%) Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RL+ + +L E+ + T D++ N+DG +QEP +LP+R PN+L NG+ GIAVGMAT+I Sbjct: 551 TEARLTPLAMEMLREIDEETVDFISNYDGRVQEPMVLPSRFPNLLANGSGGIAVGMATNI 610 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQL----LDIVQGPDYPTEAEIITSRAEIRKIYENGR 236 PPHNL E+A A ++ + + ++ V+GPD+PT I+ S+ I Y+ GR Sbjct: 611 PPHNLYELADAVFWCLENHDADEETMLVAVMERVKGPDFPTAGLIVGSQ-GIADAYKTGR 669 Query: 237 GSVRMRAVWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDH 291 GS+R+R V + E+ ++VI+ LP+QV+ + IA Q+R +L + ++ D+ Sbjct: 670 GSIRIRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRTGRLAGISNVEDQGSD 729 Query: 292 ENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWL 351 R+VI + + V V+N+L+ T L+ S+ N+ I +DG P L +++ ++ Sbjct: 730 RVGVRIVIEIKRDAV-AKVVLNNLYKHTQLQTSFGANMLSI-VDGVPRTLRLDQMICYYV 787 Query: 352 VFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFG 408 + D + RR YRL K +R HIL GL+ A +DEVI +IR D + ++ Sbjct: 788 EHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVITLIRASQTVDIARVGVVELLD 847 Query: 409 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 + + QA+AIL+++LR LA LE +I + +++E E L ILA + +++ EL Sbjct: 848 IDDIQAQAILDMQLRRLAALERQRIIDDLAKIEVEIADLGDILAKPERRRGIIRNELTEI 907 Query: 469 AQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRS--------AKGHDIDA 520 A+ YGDDRR+ + + +++ D++ E V + +++ G+ + K Sbjct: 908 AEKYGDDRRTRIIAVD--GDVNDEDLIAREEVVVTITETGYAKRTKTDLYRSQKRGGKGV 965 Query: 521 PGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPP 578 G K D + ++ ++F + GR Y LP A +G+ + L P Sbjct: 966 QGAGLKQDDIVRHFFVCSTHDWILFFTTQGRVYRAKAYELPEASRTARGQHVANLLAFQP 1025 Query: 579 GATVDHML---MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVV 635 + ++ D L++A+ AG D + G I L +N ++ V+ Sbjct: 1026 EERIAQVIQIRSYEDAPYLVLATRAGLVKKSKLTDFDSNRSGGIVAINLRDNDELVGAVL 1085 Query: 636 IEDASDMLLAITQAGRMLMFPVSD--LPQLSKG-KGNKIINIPSAEAARGEDGLAQLYVL 692 D LL ++ G+ + F +D L + + G + + + +D L L V+ Sbjct: 1086 CAADGD-LLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNA------DDRLLSLNVV 1138 Query: 693 PPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 + L + K E + G RG +G L R R DSE Sbjct: 1139 REDTYLLVATSGGYAKRTSIEEYPMQG-RGGKGVLTVMYDR--RRGSLVGAIVVDEDSE 1194 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 58/117 (49%), Positives = 81/117 (69%), Gaps = 1/117 (0%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 E + + + + +Y++Y+M VI+ RALP + DGLKPV RR++YAM + G KS Sbjct: 15 RVEPVDIQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMLDSGFRPDRSHAKS 74 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 AR+V + +G YHPHGD++ Y+ +V MAQP+S RYPLVDGQGN+G+P AAMRY Sbjct: 75 ARSVAETMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSP-GNDPPAAMRY 130 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 39/214 (18%), Positives = 85/214 (39%), Gaps = 14/214 (6%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP------GLNYKAGDSFKA 533 Q E + + P ++ ++ G V+ +K D D+ +N + D Sbjct: 1023 FQPEERIAQVIQIRSYEDAPYLVLATRAGLVKKSKLTDFDSNRSGGIVAINLRDNDELVG 1082 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK--LTLPPGATVDHMLMESDD 591 AV ++ ++ V + G+S + R G +G + + + + +D Sbjct: 1083 AVLCAADGDLLLVSANGQSIRFSATD-EALRPMGRATSGVQGMRFNADDRLLSLNVVRED 1141 Query: 592 QKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAH---VMPPVVIEDASDMLLAITQ 648 LL+A+ GY + + + R GK ++T+ + ++ +V+ D L AIT Sbjct: 1142 TYLLVATSGGYAKRTSIEEYPMQGRGGKGVLTVMYDRRRGSLVGAIVV-DEDSELYAITS 1200 Query: 649 AGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAAR 681 G ++ + Q + KG +++N+ + Sbjct: 1201 GGGVIRTTARQVRQAGRQTKGVRLMNLGEGDTLL 1234 Score = 58.4 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 42/135 (31%), Gaps = 2/135 (1%) Query: 510 VRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEP 569 +R G+ + A D + + + ++ S G + P G+ Sbjct: 1111 LRPMGRATSGVQGMRFNADDRLLSLNVVREDTYLLVATSGGYAKRTSIEEYPMQGRGGKG 1170 Query: 570 LTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDL--VARNRAGKALITLPEN 627 + + ++ ++ +D +L + G T + R G L+ L E Sbjct: 1171 VLTVMYDRRRGSLVGAIVVDEDSELYAITSGGGVIRTTARQVRQAGRQTKGVRLMNLGEG 1230 Query: 628 AHVMPPVVIEDASDM 642 ++ + S Sbjct: 1231 DTLLAIARNAEESAD 1245 >UniRef50_O52166 Topoisomerase IV subunit n=2 Tax=Mycoplasma hominis RepID=O52166_MYCHO Length = 933 Score = 614 bits (1583), Expect = e-174, Method: Composition-based stats. Identities = 207/730 (28%), Positives = 356/730 (48%), Gaps = 29/730 (3%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 +++ + + + + YS Y+I RA+P DGLKPVQRRI+Y+M L L S F Sbjct: 12 VTENIIEKNMADIMSDRFGRYSKYIIQQRAIPDARDGLKPVQRRILYSMWNLHLKNSEPF 71 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VGDV+G+YHPHGDS+ YEA+V MAQ + +PL++ GN G+ D AAMRY Sbjct: 72 KKSARIVGDVIGRYHPHGDSSIYEALVRMAQDWKSNFPLIEMHGNKGSID-DDPAAAMRY 130 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TESRL K SEL+L +L + PNFD + EP +LPA PN+L+NG GIA G AT+I Sbjct: 131 TESRLEKISELMLKDLDRKVVKMAPNFDDSEYEPIVLPALFPNLLVNGAKGIAAGFATEI 190 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHNL EV A IALI P ++++L +IV+GPD+PT A II EI+K +G+G + Sbjct: 191 PPHNLGEVIDATIALIKNPTISIEELSEIVKGPDFPTGA-IINGINEIKKALSSGQGRIT 249 Query: 241 MRAVWKK--------EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHE 292 + + + + + I +P V ++++ I A +KK+ + ++ D++D Sbjct: 250 ISSKYHYVYDKKDESKIIGIEIIEIPFGVVKSKLVADIDAIAIDKKISGIKEVLDQTDRN 309 Query: 293 NPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLV 352 + + + + + D ++ +L T+L SY N+ I + RP + NL L +L Sbjct: 310 GISIFIQL--EDGANADAIIAYLMNKTELSISYSYNMVAID-NNRPVILNLYSALIAYLS 366 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKP----ALMSRFG 408 ++ +NY L+K RL I+EG + DEVI +I+ D K ALM++F Sbjct: 367 HLKEVNINGINYDLKKFKLRLEIVEGFIKVAEISDEVIHLIKESDNSKKGVILALMNKFK 426 Query: 409 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 +E QA AI EL+L L+++++++ + E+ LE + + +L + + N L K+L Sbjct: 427 FSELQATAIAELRLYKLSRMDQIEFQEEKKNLEIQIENCNKLLNDKWEFNQYLIKQLLEI 486 Query: 469 AQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI---DAPGLNY 525 Y R + + +++ K + + +E + +++ G+ + + Sbjct: 487 KNQYSKPRLTEISDQKIDKEIDHKLLTKNEDFYLYITKDGYYKKISLKVYTSNELSTFKL 546 Query: 526 KAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVD 583 K D+ K S ++F + G + ID + G+ ++ + L + Sbjct: 547 KEEDNVFYFDKVNSLSKILFFTNLGNYFIIDCHLFKDCNWKDLGQHISSIVALESSEKII 606 Query: 584 HML---MESDDQKLLMASDAGYGFVCTFNDLVARNR-AGKALITLPEN-AHVMPPVVIED 638 ++ ++ ++ S GY D ++ K ++ ++ ++ I + Sbjct: 607 RVIEITSFNNYANFILMSKLGYAKKVNLRDFENKSSLKTKTCMSFKDDNDELIDAQ-ISN 665 Query: 639 ASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTL 698 ML + G + ++L + I + + ++ + + + Sbjct: 666 DEKMLFILLNNGMYHLVSENELKV-GISLKARGIRLLLNLYKHPQLQVSGFITVSKYNNI 724 Query: 699 TIHVGKRKIK 708 IK Sbjct: 725 IYLTQGGYIK 734 >UniRef50_C5J6X2 Topoisomerase IV subunit A n=1 Tax=Mycoplasma conjunctivae HRC/581 RepID=C5J6X2_MYCCR Length = 864 Score = 612 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 208/748 (27%), Positives = 350/748 (46%), Gaps = 34/748 (4%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + +L ++ Y+ YVI +RA+P + DGLKPVQRRI+Y+M LGL +KK Sbjct: 6 NQIINSSLDNIVAEKFIRYAKYVIQNRAIPDVRDGLKPVQRRILYSMWMLGLKKEKAYKK 65 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SAR VGDV+GKYHPHGDS+ Y+A+V M+Q + PLVD GN G+ D AAMRYTE Sbjct: 66 SARVVGDVIGKYHPHGDSSIYDALVRMSQEWKINIPLVDMHGNKGSID-DDPAAAMRYTE 124 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 RL + S L+L L + W PNFD + +EP +LP +PN+L+NG GIA G AT+IPP Sbjct: 125 VRLEEISALMLELLNKNVISWAPNFDDSEKEPTVLPTIVPNLLVNGAIGIASGFATEIPP 184 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HNL EV AIA+I K T +L I+ GPD+PT I+ I + G+G + + Sbjct: 185 HNLSEVIDGAIAMIKNEKITNSELQSIIPGPDFPTGG-IVYDNGGISDAFSKGKGRISLV 243 Query: 243 AVWKKEDGA----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 A ++ + + IS +P+ ++ A ++ QI +K+ + ++ D+SD + Sbjct: 244 AKYEIVNKNKDISIQISQIPYGIAKANLIRQIDDIRFEEKVYGIKEVIDQSDRNGILISI 303 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + ++D V+N+L TD++ Y N I + P + +L E++ +L ++ Sbjct: 304 DL--EADANVDLVVNYLLQKTDMQIYYSYNSVAIC-NNSPKLVSLSEMIKYYLDHLKNIK 360 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK----PALMSRFGLTETQA 414 + ++Y L K KR I++G L DEVI++IR D K L++ FG T+ QA Sbjct: 361 LKEIDYDLFKSQKRYEIIQGFLKVADITDEVIKVIRASDNSKIGVIKDLIAHFGFTQIQA 420 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 EAI +++L L+K+++ E ELE + + L + L K L+ +G Sbjct: 421 EAIAQMRLYRLSKIDQENFLSESKELENKIELLNNLKNDSTAFKKFLIKTLKQVQNNFGQ 480 Query: 475 DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN---YKAGDSF 531 R++ + +++ + ++ D++ E + ++Q G+ + + L+ K D Sbjct: 481 PRKTQILKKDFSIKINHEDLIKDENIYFGITQQGYYKKISLKNFSLSDLDKYAIKKDDFL 540 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDH---ML 586 K + V + + L + G L ++ + + Sbjct: 541 ILLTKLNLKDKIFLVTNKANLVVLAAHQLEETSYKNIGNDLKIEVDFQQDEYIVAQINIS 600 Query: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGK-ALITLPENAHVMPPVVIEDASDMLLA 645 ++ +++ S G + + L + L E+ ++ + D + Sbjct: 601 ENKNNSNIILVSKHGLAKRVSLDSLFNLRTKKLTNIFKLKEHDELIGA-YLTDNLANIAI 659 Query: 646 ITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGK 704 I+ R L D+P + G K+ + E + +A + I Sbjct: 660 ISNLNRSLKVAEIDIPIYGRNSAGVKLATLKKGEQIQLAYPIA-----DGEKIAIIDS-- 712 Query: 705 RKIKLRPEELQKVTGERGRRGTLMRGLQ 732 EE+ G RG ++ L+ Sbjct: 713 ---WASYEEISNSQITFGARGASLKNLK 737 >UniRef50_C6WIH8 DNA topoisomerase (ATP-hydrolyzing) n=15 Tax=Actinomycetales RepID=C6WIH8_ACTMD Length = 1143 Score = 596 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 221/707 (31%), Positives = 359/707 (50%), Gaps = 40/707 (5%) Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 V + +GKYHPHGD+A Y+AMV +AQ FS PL+DG GN+G+PDD AA RYTE+R+ Sbjct: 401 VVHNCMGKYHPHGDTAIYDAMVRLAQDFSLNTPLIDGHGNFGSPDDGP--AASRYTEARM 458 Query: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 S + LL+ EL + T ++ PN+DG+L EP +LPA PN+L+NGT+GIAVGMAT++ PHNL Sbjct: 459 SGAAMLLVGELDEDTVEFRPNYDGSLTEPAVLPAAFPNLLVNGTSGIAVGMATNMIPHNL 518 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVW 245 EV AA L+ P L++L++ + GPD PT ++ E+RK YE GRG VRMRA Sbjct: 519 GEVVAAARHLVKHPDADLEKLMEFIPGPDLPTGG-MLLGLDEVRKAYETGRGVVRMRATV 577 Query: 246 KK-------EDGAVVISALPHQVSGARVLEQIAAQM-RNKKLPMVDDLRDESDHENPTRL 297 A+ ++ LP+ V +++E+I ++ ++K+L + D++D +D EN RL Sbjct: 578 TTGPLEGSRGRQAITVTELPYGVGPEKIIEKITDEVNKSKRLTGIADVKDLTDRENGIRL 637 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 VI + V+ ++ L+ T LE+S+ IN N++ +DG+P L +L +L R + Sbjct: 638 VIECK-VGVNPQALLADLYRLTPLEQSFGIN-NLVLVDGQPQTLGLKALLEVFLAHRYEV 695 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTETQA 414 V RR +R K RLH+++GLL A ++ID+VI++IR + K L+S F L+ETQA Sbjct: 696 VTRRTRFRRRKREDRLHLVDGLLKALIDIDKVIKLIRRSENAQAAKEGLVSTFALSETQA 755 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 IL+ LR L + + +++ GEQ L E +L IL ++ + ++ EL A+ Sbjct: 756 AYILDTPLRRLTRFDSVELEGEQERLRGEIAELSTILDDDKVLRRVVSNELGKVAKDLSA 815 Query: 475 DRRSPLQEREEAKAMSE-----HDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAG- 528 +RR+ L + + + ++ + +P +VLS G V +A ++G Sbjct: 816 ERRTTLLDGDLKEVLAASRTSGPLEVADDPCQVVLSATGLVARTAAESEEAVEGRKRSGR 875 Query: 529 ---DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLP-----SAR---GQGEPLTGKLTLP 577 D+ A V + V+ V S GR++ D + LP G P+ + L Sbjct: 876 AKHDAVAATVHTTARGQVLLVTSRGRAFKTDVLPLPVLPQGEGTLSLSGGVPVRELVGLE 935 Query: 578 PGATVDHMLM--ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVV 635 G V + E+D L + + G VC +I L V+ Sbjct: 936 AGERVVGIAPLGETDSPGLALGTKQGVVKVCAPE--WPVRSDEFEVIGLKAGDEVVGAQW 993 Query: 636 IEDASDMLLAITQAGRMLMFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVLPP 694 + D + L+ ++ +L + S + +G G I +P + + Sbjct: 994 LADGQEALVFVSSEASLLRYAASLVRPQGLRGGGMAGITLPGEASVVFFGAVRTDDAEHG 1053 Query: 695 QSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDS 741 + + + + +K+ P +L G R G + + + + Sbjct: 1054 EP-VVVTSTGQSVKVTPFDLYPAKG-RATGGVRAHRFLKGEDGLVLA 1098 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 40/67 (59%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 +L E++YL Y+ VI RALP DGLKPV RRI+++M+E ++ + KS Sbjct: 22 KVIDNSLTTEIEDSYLEYAYSVIHSRALPDARDGLKPVHRRILFSMNEQNHRPTSPYVKS 81 Query: 64 ARTVGDV 70 +R VGD Sbjct: 82 SRVVGDC 88 >UniRef50_Q4A8X9 Topoisomerase IV subunit A n=3 Tax=Mycoplasma hyopneumoniae RepID=Q4A8X9_MYCH7 Length = 846 Score = 594 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 208/748 (27%), Positives = 354/748 (47%), Gaps = 34/748 (4%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 D L + ++ YS YVI RA+P + DGLKPVQRRI+Y+M +LGL S +KK Sbjct: 6 DSVINSRLEKILAEKFIRYSKYVIQQRAIPDVRDGLKPVQRRILYSMWQLGLKNSKNYKK 65 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SAR VGDV+GKYHPHGD + Y+A+V +AQ + PLV+ GN G+ D AAMRYTE Sbjct: 66 SARVVGDVIGKYHPHGDFSIYDALVRLAQEWKMNSPLVEMHGNKGSID-DDPPAAMRYTE 124 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 RL++ SE LL + + + PNFD + +EP +LPA PN+L+NG GIA G AT+IPP Sbjct: 125 VRLAEISEHLLELISKNVVSFCPNFDDSEKEPTILPAIFPNLLINGAIGIASGFATEIPP 184 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HNL EV A I +I P T++++ I+ GPD+PT I+ ++ I ++ G+G +++ Sbjct: 185 HNLGEVIDATILMIKNPGITIEEISTIILGPDFPTGG-IVYGKSGIFDAFKTGKGKIKIS 243 Query: 243 AVWKKEDGA----VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + +K + + I+++P +S + ++E+I + K+ + ++ D+SD + L+ Sbjct: 244 SDYKIFEKNGQNVIEITSIPFGISKSSLIEEIDDIRFDAKIYGIKNVIDQSDQNGVSILI 303 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + + D ++N+L T L+ Y N I D P + ++ E++ +L R Sbjct: 304 EL--EQDGNPDLIINYLLQKTHLQIHYSYNSVAIC-DNSPKLLSIKEMIFYYLEHLRKIK 360 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPA----LMSRFGLTETQA 414 N+ L K KRL I+ G L DEVI++IR D K L+ F ++TQA Sbjct: 361 LAEFNFELYKNKKRLEIITGFLKVADITDEVIKVIRASDNSKVGVVSDLIKFFNFSQTQA 420 Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 EAI ++L L+K+E+ E LEK + + ++ ++ + + L L + +G Sbjct: 421 EAIASMRLYRLSKIEQQIYLEESKNLEKNIARFKKLIENKDEFDKNLINMLTDFKKHHGK 480 Query: 475 DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGH---DIDAPGLNYKAGDSF 531 R++ + + + +++ +++ E +++ G + + GD F Sbjct: 481 PRKTKIIDSDIKIKINKDELVKDEFFYFWITKSGLYKKLDIKNSLPDEIEKTQLPNGDFF 540 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEP--LTGKLTLPPGATVDHML--- 586 Q VF+ + G + +P + P L L +P + + Sbjct: 541 IFQGIINQKQKAVFLTNKGEIAILAVHQIPELNLKNSPNNLKITLGIPNNQQILSVFFAD 600 Query: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKA-LITLPENAHVMPPVVIEDASDMLLA 645 Q L+ S + + L+ + + E ++ +E+ ++ Sbjct: 601 SFESSQFLIFISKFSFAKRMNLDQLMKIKQKKLQNIFRFKEGDELISV-FLEEKLKNIVL 659 Query: 646 ITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGK 704 IT R L +S++P ++ G KI E + +S I Sbjct: 660 ITTQNRALKMSISEIPIYTRNSTGIKIFRHRKNEFISASQTIES-----SESLAVIDFNS 714 Query: 705 RKIKLRPEELQKVTGERGRRGTLMRGLQ 732 + K+ E L G + + + Sbjct: 715 QFEKINTENLF-----FGNKILTPKNFK 737 >UniRef50_Q4A6Z3 Topoisomerase IV subunit A n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A6Z3_MYCS5 Length = 860 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 194/700 (27%), Positives = 368/700 (52%), Gaps = 28/700 (4%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + ++ + E + YS YVI +RA+P + DGLKPV RRI+Y+M LGL+ KFKK Sbjct: 8 EKIITKSVDKIMEERFETYSKYVISNRAIPDVRDGLKPVHRRILYSMYALGLDFDKKFKK 67 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 SAR VGDV+GKYHPHGD++ Y AM+ +AQ + PL+ GN G+ DD K AAMRYTE Sbjct: 68 SARIVGDVIGKYHPHGDTSVYNAMINLAQWWKMNIPLLSMHGNIGSIDDDKQ-AAMRYTE 126 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +L+K + ++ ++ + T ++PNFD + EP +LP+ PN+L+NG+ GIA+GMAT++PP Sbjct: 127 VKLAKIANYIIGDIKKKTVKFIPNFDDSETEPIVLPSMFPNLLVNGSRGIAIGMATEMPP 186 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR---GSV 239 HNL E+ A + I PK + +L + V GPD+PT +I I + ENGR + Sbjct: 187 HNLGEIIDACVYKIKHPKASYSELSNFVLGPDFPTGG-VIKGTKGIAEALENGRNEKNKI 245 Query: 240 RMRAVWKK----EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 ++ ++ ++ + I+ +P+ V +++ +I ++NK + + +++D SD + Sbjct: 246 KLFCKYEIYTKGKNKFIEITEIPYGVVKVKLVYEIDLIIQNKLIDGIIEIKDRSDRDGIN 305 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 L+ + ++ + + ++N+LF+ T ++ +Y N N++ + P + NL ++S ++ + Sbjct: 306 ILITLDINS--NEESILNYLFSKTQMQITYSYN-NIVIDNNSPTLMNLENLISSYIAHIK 362 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK----PALMSRFGLTE 411 + LNY L K RL I+ G + +VIE+IR K L+ F T+ Sbjct: 363 NVKTLSLNYDLNKAKVRLEIINGFIKVSEITSQVIELIRKTQGSKMGVVNNLIQVFNFTK 422 Query: 412 TQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQA 471 QAE+I EL+L L++ ++ E+ E+++ + ++ +L +E++ NN L E++A + Sbjct: 423 LQAESIAELRLYKLSQTDKEIYLKEKVEVKETINIIENLLNNEKEFNNFLINEIKAIKKE 482 Query: 472 YGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN---YKAG 528 + R++ ++E++ + ++ D++ E + + +S+ G+++ ++ K Sbjct: 483 FSVPRKTQIEEKDFEVSYNKLDLVKEEIINVSISKNGFIKRFSDKVLENNEWKNYALKEK 542 Query: 529 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKL-TLPPGATVDHM 585 D+ K + ++ + G + + + + G + + P + + Sbjct: 543 DNLVFFSKVNTVNFLLCFTNLGNYVIVAIYQIQEVKWKDLGNNINLFASDIRPDEEIVSV 602 Query: 586 LMESD---DQKLLMASDAGYGFVCTFNDLVARN-RAGKALITLPENAHVMPPVVIEDASD 641 + SD + +++ + GY D + + L E+ +++ + + Sbjct: 603 IEVSDFEENLSVMLGTKQGYFKRVMLKDFLVSRFTKKYTAMPLNEDDYLIKA-KLTNLDS 661 Query: 642 MLLAITQAGRMLMFPVSDLPQLS-KGKGNKIINIPSAEAA 680 L+AIT+ + F S++ S K +G+K I + Sbjct: 662 YLVAITENSIISKFSESEIMFYSTKARGSKAIYFSVGDKL 701 >UniRef50_C7H694 DNA gyrase subunit A n=11 Tax=Bacteria RepID=C7H694_9FIRM Length = 749 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 216/700 (30%), Positives = 347/700 (49%), Gaps = 24/700 (3%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 + E Y+ Y+M VI+ RALP I DG KP R+++Y M +GL A+ KSA VG Sbjct: 33 PITSTLETNYMPYAMSVIVSRALPEI-DGFKPAHRKLLYTMYGMGLLKGAR-TKSANIVG 90 Query: 69 DVLGKYHPHGDSACYEAMVLMAQ-PFSYRYPLVDGQGNWGAPDDPK-SFAAMRYTESRLS 126 + +PHGD+A Y+ MV M + S P VD +GN+G S AA RYTE++L Sbjct: 91 STM-HLNPHGDAAIYDTMVRMGRGNESLLVPFVDSKGNFGKAYSRDMSCAAARYTEAKLE 149 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 E L ++ + T D+VPN+DGT EP +LP P IL N T GIAVGMA +I NL Sbjct: 150 GVCEELFRDIDKETVDFVPNYDGTTTEPTLLPVTFPTILANNTLGIAVGMACNICSFNLA 209 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 E+ +AL+ PK + + PD+ +I+ A++R++YENGRGS+++RA + Sbjct: 210 ELCATTVALMKDPKHDISTTM---PAPDFVGGGQILYDEAQMREVYENGRGSIKVRARYN 266 Query: 247 K--EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 + + I+ +P + ++++IA ++ K+ + D+RDE+D + + Sbjct: 267 VVPGENMLEITQIPPTTTVEAIMDKIAELVKAGKIKEISDMRDETDLNGLK--LTLDLKR 324 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 364 VD +++M L+ TT LE S+ N N+ + G+P V + EIL EW FR + VRRR Y Sbjct: 325 GVDPEKLMAKLYKTTPLEDSFSCNFNV-LVSGQPRVMGVREILQEWTAFRMECVRRRTYY 383 Query: 365 RLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKP---ALMSRFGLTETQAEAILELK 421 L KRLH+L+GL L+ID+ I IIR +E LM FG+ E QA+ + E+K Sbjct: 384 DLHGKEKRLHLLKGLAAILLDIDKAIHIIRTTEEETEVVPNLMIGFGIDEVQADYVAEIK 443 Query: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQ 481 LRHL + +K GE +LEK+ L ILA ++ ++ EL A+ Y RRS + Sbjct: 444 LRHLNREYILKRTGEIEQLEKDIADLNDILAKPARIRRIIINELNDVAKKYAQPRRSEIL 503 Query: 482 -EREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGL-NYKAGDSFKAAVKGKS 539 + E ++ +E +++P PVT+ ++ G+++ + G K GD V+ ++ Sbjct: 504 YDLPEEESGAEEEVIPDYPVTVFFTREGYLKKIPPQSLRTAGAHKLKEGDEIIHQVETRN 563 Query: 540 NQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHMLMESDDQ-KLLM 596 N +F + Y + L + G L G+L + G + M++ D +L Sbjct: 564 NVEALFFTDKQQVYKVRLNELEDGKVAQMGIYLPGRLGMDEGENILAMVITGDYSGYVLF 623 Query: 597 ASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFP 656 G + + L+ + + ++ L T AGRML+ Sbjct: 624 FFAGGKCAKIPLASYATKQNR-RKLLKAYSDKEPLAKLLFLPEDTELAIRTSAGRMLLVN 682 Query: 657 VSDLPQLSK--GKGNKIINIPSAEAARGEDGLAQLYVLPP 694 + + + +G ++ + + L + P Sbjct: 683 TAQIAAKTTRDSQGVAVVTLKKNQTIASVVPAETLELANP 722 >UniRef50_A2BND1 DNA gyrase/topoisomerase IV, subunit A n=7 Tax=Prochlorococcus marinus RepID=A2BND1_PROMS Length = 813 Score = 585 bits (1508), Expect = e-165, Method: Composition-based stats. Identities = 223/739 (30%), Positives = 382/739 (51%), Gaps = 38/739 (5%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 ++L E + +YL Y+M VI+ RALP DGLKPVQRRI++AM ELGL F+K Sbjct: 5 NFTSISLQEEMQRSYLEYAMSVIVGRALPDARDGLKPVQRRIIFAMYELGLTPDKPFRKC 64 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VGDVLGKYHPHGD A Y+A+V + Q FS +YP +DG GN+G+ D AAMRYTE+ Sbjct: 65 ARVVGDVLGKYHPHGDQAVYDALVKLVQNFSTKYPTLDGHGNFGSID-NDPPAAMRYTET 123 Query: 124 RLSKYSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 RL+ + L E+G T ++ NFDG+ +EP +LPA+LP +LLNG+TGIAVGMAT+IPP Sbjct: 124 RLAPIAHKGFLEEIGSETVNFSNNFDGSQKEPDVLPAQLPFLLLNGSTGIAVGMATNIPP 183 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HNL E+ + L+ + +L +I++GPD+PT E+I SRA I ++Y+ G+GS+ +R Sbjct: 184 HNLGEIVDGLVTLVKNKDISDKKLFNIIKGPDFPTGGELIYSRA-IEELYQTGKGSITIR 242 Query: 243 AVWKKED----------GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHE 292 V E+ A++I LP+Q++ A +E++A + K+ + D+RDESD + Sbjct: 243 GVINTEEVNLGKGKHKKNAIIIKELPYQINKAGWIEKLAELVNAGKIIGISDIRDESDRD 302 Query: 293 NPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLV 352 ++ + + + + V+++L+ T L+ ++ + + G+P NL + L+ +L Sbjct: 303 GMRIVIELKK--DSNSELVISNLYKKTTLQTNFGAIF-LALIKGKPVQLNLKKYLNYFLE 359 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMSRFGL 409 FR +T+R+R Y L+ L +L I EGL A +I +VI II + + + L+ +F L Sbjct: 360 FREETIRKRTFYFLKNTLDKLEISEGLSKATKDIKKVIAIIEESENSVQARSKLVEKFFL 419 Query: 410 TETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADA 469 +E QA ++L++ L+ L LE+ +I E L ++++ Q +L + LL +EL Sbjct: 420 SEKQANSVLDMPLKKLTNLEKNQIDNEIKNLAEKKNYFQKLLNERELLLKLLIEELLILK 479 Query: 470 QAYGDDRRSPLQ------EREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAP-- 521 + Y R++ + E E + ++ + + +++ + Sbjct: 480 KKYNVIRKTKIIKNLNQNEELETLNNQILEDFINKKTKLYIDNRLYLKRMILSNYKKSFE 539 Query: 522 GLNYKAGDSFKAAVKGKS--NQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKL--TLP 577 G+N + N ++ + +TGR + I S+ + L K+ + Sbjct: 540 GVNKIIDNKNIQKFICNIEKNTKLIGITNTGRVFNI---DWESSINKDYKLDNKILGNIH 596 Query: 578 PGATVDHMLMESDDQKLL-MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVI 636 P ++ ++ + + L + + G F+ + ++ + L N + I Sbjct: 597 PSEIINFHSIKKETRNYLCILNSDGRFKKVLFDKDMIKSNRSFTITKLKNNLKTVD-SFI 655 Query: 637 EDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQS 696 + S L+ +T GR+ F +S+ + K +K + I E ++ ++ Sbjct: 656 SNESKNLIILTSIGRIFKFNLSNKFLTATSKQSKGLIIAK--LLPTEKIVSCCTFHDGEN 713 Query: 697 TLTIHVGKRKIKLRPEELQ 715 I + + E+ Sbjct: 714 IFLISKQGKIFCINSNEIY 732 >UniRef50_A7VBP9 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A7VBP9_9CLOT Length = 759 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 213/780 (27%), Positives = 362/780 (46%), Gaps = 73/780 (9%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 MS+ + +Y++YSM VI +RALP + DGLKPVQRRI+Y+++ L + Sbjct: 1 MSEKILNVDYESEMGQSYVDYSMSVITERALPDVRDGLKPVQRRILYSLNGLA-GSDKPH 59 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 +K AR VGD +GKYHPHGDS+ YE +V MAQ + PLVD GN+G+ D AAMRY Sbjct: 60 RKCARIVGDTMGKYHPHGDSSIYEGLVNMAQNWKLPIPLVDPHGNFGSVDGSG-AAAMRY 118 Query: 121 TESRLSKYSELL-LSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 179 TE+R+SKY+E + + +L ++PNFDGT EP LP ++PNIL++G+TGIAVGMAT+ Sbjct: 119 TEARISKYTEDVCMKDLSFFKDQFIPNFDGTETEPTFLPFQVPNILVSGSTGIAVGMATN 178 Query: 180 IPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSV 239 IP HNL EV A + ++ P+ L+ LLD+++GPD+ T I S+ ++ ++YE G G + Sbjct: 179 IPTHNLGEVIDATVMYLNDPEVPLENLLDVMKGPDFATGGIINASKEDLMQVYETGLGRI 238 Query: 240 RMRAVWKKED-----GAVVISALPHQV--SGARVLEQIAAQMRNKKLPMVDDLRDESDHE 292 ++R + D ++ ++ +P + A+ L+ +A RN++LP V D+ D D Sbjct: 239 KVRGKVEIRDIGHGRKSICVTEIPFTMIGGTAKFLDTVAELTRNRELPAVVDIADRGDKN 298 Query: 293 NPTRLVIVPRS-NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWL 351 + V + ++ ++N L+ LE ++ +N+N I DG+P V L ILS + Sbjct: 299 GECLCIDVKKGTTDEEIRNIINILYKKAGLEDTFGVNINCI-YDGKPEVMGLRRILSIYT 357 Query: 352 VFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED---EPKPALMS--- 405 F+ + LE ++ I GLL A ID +IEI+R + K LM Sbjct: 358 DFKYGLYNTKYTKLLENQMEVREIKTGLLTAVDCIDLIIEILRGSKKVADAKACLMHGDT 417 Query: 406 -----RFG----------LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450 RF TE QA+AIL ++L+ L LE ++ E + EK + + Sbjct: 418 SNITFRFKGSEADAKFLCFTEKQADAILAMRLQKLIGLEVNALKKELEDAEKLIKKYSKL 477 Query: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510 L S+ M + ++ + Y R++ + + E + V ++L + ++ Sbjct: 478 LESKSNMKKQMIADMLEIKEKYAIPRKTVIADCGEVVVKKAQAV--ETEVAVLLDRFYYI 535 Query: 511 RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARG----- 565 + + D ++ + K K+ + V + Y I + + Sbjct: 536 KVVDANLYDKNKAQIDKD--YRFSFKCKNTERVGVFADNNQMYMIKVADIIKLQAKKNTG 593 Query: 566 --------------QGEPLTGKLTLPPGATVDHMLMESD--DQKLLMASDAGYGFVCTFN 609 +G + + + +M D+ LL + G + N Sbjct: 594 KKGNGSGLIGRLSDKGIQIFEFCNMNGNENILYMCCLEQIIDKNLLFVTKHGQAKLVPGN 653 Query: 610 DLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGN 669 + + + E + + + D ++ + G +S++P KG G Sbjct: 654 NYDVLRK--MIAASKQEED--IIFIHDAEMEDFIVVKSMLGYYARIQISEIPVKGKGAG- 708 Query: 670 KIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMR 729 I + +D + ++ V + + + + +RG +GT +R Sbjct: 709 -CIRL---VNITDDDEIEEVAVGSTKDSFFVDNTEILFTRIKA------CKRGSKGTKLR 758 >UniRef50_A6TSS8 DNA topoisomerase (ATP-hydrolyzing) n=7 Tax=Clostridiaceae RepID=A6TSS8_ALKMQ Length = 930 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 205/733 (27%), Positives = 357/733 (48%), Gaps = 34/733 (4%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + E + + E+ Y+ Y+M VI+ RALP I DG KP R+++Y MS++GL + K Sbjct: 6 NEIEVQEIEDTLESNYMPYAMSVIVSRALPEI-DGFKPSHRKLLYTMSQMGLLTKGR-SK 63 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFS-YRYPLVDGQGNWGAPDDPK-SFAAMRY 120 SA VG + K +PHGD A YE MV M + + VD +GN+G A+ RY Sbjct: 64 SANIVGTTM-KLNPHGDQAIYETMVKMTRGHQGLLHAYVDSKGNFGKVYSRDMREASARY 122 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE++L K+++ + S + + D+V N+D T +EP +LP PNIL+ GIAVGMA I Sbjct: 123 TEAKLEKFTQEIFSNIDKNVVDFVDNYDSTTKEPTLLPTTFPNILVKYNKGIAVGMAEHI 182 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 P NL+EV +A IA + + LL+ ++ PD+ T E+I + ++++Y GRG+ + Sbjct: 183 PSFNLKEVCEATIAYLKDKEI---DLLEYLKAPDFSTGGELIFNEVTMKQVYHTGRGTFK 239 Query: 241 MRAVWK--KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 +R ++ K D A+ I +P+ S ++E I ++ K+ + D+RDE+D + Sbjct: 240 VRGKYRYVKADNAIEIYEIPYTTSIEAIIESIIELVKKGKIKEITDIRDETDKNGLKITI 299 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + R V+ D +M F T LE S+ N N I ++G P V + EIL W+ FR + Sbjct: 300 DLKR--GVNPDDLMVKFFKWTKLEDSFGCNFN-ILINGHPKVMGVKEILDHWIAFRLSCL 356 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK---PALMSRFGLTETQAE 415 +R++ + ++K+ ++L++L+GL LNI EV+++I+N + K LM +F L QAE Sbjct: 357 KRQVQFEIDKLEEKLNLLKGLEKIQLNIHEVVDVIQNTKKDKDVIANLMEQFDLNLAQAE 416 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 I E+KLR L + +K E S +EKE +L +LA E K N ++ +L+ ++AYG Sbjct: 417 YIAEIKLRSLNQELILKKIKEISAIEKELKRLGMVLARESKQNEIIVNDLKRISEAYGIP 476 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPG-LNYKAGDSFKAA 534 R++ + E + +SE ++ + + + L+ G+++ + + G K D Sbjct: 477 RKTDIINENEVEVLSEEILIENYNMKLFLTNEGYIKKISLASLRSSGDHKLKDNDYIVQE 536 Query: 535 VKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLMESDDQ 592 + G + V+ + Y I L ++ G+ L L L + H++ D Q Sbjct: 537 IDGTNRGEVLLFSNKETVYKIKAYELEDSKASNLGQYLNNVLGLSSDEIILHIVCTEDYQ 596 Query: 593 -KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGR 651 +L + G G + K L + + + ++A + + Sbjct: 597 GHMLFFFENGKGAKIPITSYETKTNR-KQLANAYSGDSPLVYISSIEEDLEMMATSNLNK 655 Query: 652 MLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTL------------T 699 L+F ++ ++ + +K + + + + + + P L Sbjct: 656 TLIFNTEEMSPIN-SRNSKGVQVFKCKKGISLKKIKPMDEVSPDEMLNQKVLDENPRVKF 714 Query: 700 IHVGKRKIKLRPE 712 IK P Sbjct: 715 FLTKGGYIKKIPL 727 Score = 86.1 bits (212), Expect = 4e-15, Method: Composition-based stats. Identities = 27/222 (12%), Positives = 69/222 (31%), Gaps = 9/222 (4%) Query: 480 LQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDI-DAPGLNYKAGDSFKAAVKGK 538 + E + +++ + + V L++ G+++ + + K D V+G Sbjct: 692 MDEVSPDEMLNQKVLDENPRVKFFLTKGGYIKKIPLTTLVEDEEQRLKKDDYIIQEVEGA 751 Query: 539 SNQPVVFVDSTGRSYAIDPITLPSARGQ----GEPLTGKLTLPPGATVDHMLMESDDQ-K 593 ++ + Y L + G+ + L L + ++ + + Sbjct: 752 EEGELLLFSNKQILYKTKARELEEDEDKVASIGQRIRSILALDADEDIIYITYTDNYKGH 811 Query: 594 LLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRML 653 +L + G G + K L + + L+A + ++L Sbjct: 812 MLFFFENGKGAKIPLESYETKTNR-KQLANAYNGESPLVYISNIQEDIELVATSNINKIL 870 Query: 654 MFPVSDLPQLSK--GKGNKIINIPSAEAARGEDGLAQLYVLP 693 +F + + S KG +I+ + L + Sbjct: 871 IFNTAQINPKSSRDSKGVQILKSKEGSYLQEIKALDEFDYED 912 >UniRef50_A7AVY4 DNA gyrase A subunit, putative n=5 Tax=cellular organisms RepID=A7AVY4_BABBO Length = 1051 Score = 540 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 224/854 (26%), Positives = 384/854 (44%), Gaps = 113/854 (13%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + L L + +++ Y++ +I+ RALP DGLK V RRI++AM + L AS ++K Sbjct: 97 TVQDLELCDELSQSFMKYALSIILGRALPDARDGLKIVHRRILWAMQVMKLGASTPYRKC 156 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 A+ VGDVLGKYHPH D + Y+A+ ++Q F R PLVDG GN+G+ AAMRYTE Sbjct: 157 AKVVGDVLGKYHPHSDKSVYDALCRLSQLFMMRVPLVDGHGNFGS--TDDPPAAMRYTEC 214 Query: 124 RLSKYSE-LLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 RLS +SE LLL+E+G+ T D +PNFD T EP +LP+++P +L+NG++GIAVG+AT+IPP Sbjct: 215 RLSPFSEKLLLAEMGKNTVDMLPNFDSTEMEPTVLPSKVPLLLINGSSGIAVGLATNIPP 274 Query: 183 HNLREVAQAAIALIDQP-KTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 HN E+ +AA + ++LL+IV+GPD+PT I+TS +RKIY G+GS+ + Sbjct: 275 HNPEEILKAASLMAKNHGNVDTEELLNIVRGPDFPTGGHIVTSIDALRKIYTTGKGSIML 334 Query: 242 RAVWKKEDG-------------------------------AVVISALPHQVSGARVLEQI 270 +A + E+ ++++ LP+ V + V+ I Sbjct: 335 QAKYIYEERIKPRNSKRESDVVVNTYSDPSHLSFTSGSRVSIIVKELPYNVRLSDVMLAI 394 Query: 271 AAQMRNKKLPMVDDLRDESDHENPTRLVIVPR--SNRVDMDQVMNHLFATTDLEKSYRIN 328 + + L + DLRDESD ++ + + + ++++++M L + L ++ N Sbjct: 395 SKAVETGALRGISDLRDESDRGGLRLVIELKKHITTHLEVEEIMQKLKKMSGLCSFFKCN 454 Query: 329 LNMIGLDG-RPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNID 387 + G +P +L L WL FR TVR+R+ + E+ +RL+I++G +AF ID Sbjct: 455 FIALDSSGTKPVRLSLYSALKIWLEFRVQTVRKRIERQREQAKERLNIVKGFAIAFNKID 514 Query: 388 EVIEIIRNEDEPKPAL-----MSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEK 442 +++ ++RN A+ GL QA A+L + L L+++E KI E+ EL + Sbjct: 515 DIVHMVRNSSSSAEAMRMLSEKRYGGLNAEQASAVLRMSLSQLSRIERDKIDLEEKELSE 574 Query: 443 ERDQLQGILASERKMNNLLKKELQADA----QAYGDDRR---------SPLQEREEAKAM 489 + IL E + +L+ EL+ + Y R + L + + A+ Sbjct: 575 SIKRYNHILGDESHIYSLIYSELEHIRQNPEKHYTVRHRCTTLSVSGHTSLGDGDVAQDY 634 Query: 490 SEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQP--VVFVD 547 E +S + PG K + + ++ ++ Sbjct: 635 PPELGGNDEEFVDSISATIAEDHIANEPGNDPGDLVKQNPDLEGH---NPHDEPSLIVMN 691 Query: 548 STGRSYAIDPIT----------LPSARGQGEPLTGKLTLPPGA------TVD------HM 585 + G I +PS+R Q +P G+ ++ G + H Sbjct: 692 NYGLMQRIKLDNSFFRSQKSRYIPSSRLQ-QPYQGQYSIGEGENEDVAPEITQSELQLHY 750 Query: 586 LMESDDQKLLMASDAGYGFVCTFNDLVARNRA----GKALITLPENAHVMPP-------- 633 + +M S G FV + L N+ + + PEN Sbjct: 751 GVCRPGDSCMMISKDGTCFVLPVSALRLCNKGYSIWKQVKLKSPENVEYFTVTSKLLFSQ 810 Query: 634 ------------VVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAAR 681 +++++ + L+ I G++ + P K N +I + Sbjct: 811 DQNSGVSNCMYKLIMDETTSYLVLIFTDGQVGIISTKHFPSGHLYK-NPLIRLRLWNNKE 869 Query: 682 GEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRV---E 738 + ++ P + +++R +L RG+ + L+ D+V Sbjct: 870 -LKPIFAMFCCPDDDIFVGTLRGYSLRVRLNDLLGGMEHRGKTRKKLIKLKENDKVTCGA 928 Query: 739 IDSPRRASSGDSEE 752 I D++E Sbjct: 929 ILESLSNVENDAKE 942 Score = 56.5 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 75/238 (31%), Gaps = 31/238 (13%) Query: 531 FKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGA--TVDHMLME 588 + ++ +V + + G+ I PS PL + M Sbjct: 820 MYKLIMDETTSYLVLIFTDGQVGIISTKHFPSGHLYKNPLIRLRLWNNKELKPIFAMFCC 879 Query: 589 SDDQKLLMASDAGYGFVCTFNDLVA----RNRAGKALITLPENAHVMPPVVIED------ 638 DD + + + GY NDL+ R + K LI L EN V ++E Sbjct: 880 PDDD-IFVGTLRGYSLRVRLNDLLGGMEHRGKTRKKLIKLKENDKVTCGAILESLSNVEN 938 Query: 639 -----------ASDMLLAITQAGRM--LMFPVSDLPQLSKGKGNKIINIPSAEAARGEDG 685 + LL +++ GR L L + G G I +++ +G Sbjct: 939 DAKEICRFENYDNRHLLLLSEHGRAKLLHISELQLRRHG-GYGYNITR----QSSSTIEG 993 Query: 686 LAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPR 743 L V+ + + + + V + ++ DR++ SP Sbjct: 994 LYAATVVDTDDDILLVSKDGLLARKDPFTLPVASRHQKMRKFWTRMRAPDRLQYMSPV 1051 >UniRef50_B1BBK7 DNA topoisomerase n=5 Tax=root RepID=B1BBK7_CLOBO Length = 1417 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 179/735 (24%), Positives = 333/735 (45%), Gaps = 33/735 (4%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 D + + + YL Y++ VI +RA+ I DG KP R++++ + E L K K Sbjct: 665 DNEQEKDIVKVLNENYLPYAIEVIKERAIISI-DGFKPAHRKLLWTLHESNLYN--KRTK 721 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPK-SFAAMRYT 121 SA VG + + HGD + YE +V MAQ + YP V+G+GN+G A MRYT Sbjct: 722 SAHIVGSNMS-LNVHGDGSIYETLVRMAQKDTLLYPYVNGKGNFGQHTSKSLQNAHMRYT 780 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+ S ++ + + D+VPNFDG +EP +LP PN+L+N GIAVGMA+ P Sbjct: 781 EAGASNINKEFFHGINKNAVDFVPNFDGEKEEPILLPTTFPNVLVNANKGIAVGMASATP 840 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 NL+EV IA I + + PD+ T I+ ++ +IYE G+GSV + Sbjct: 841 SFNLKEVCDLTIAYIKDTNIVVSD---YLLCPDFATGGFIVRDVDKLNQIYETGQGSVTL 897 Query: 242 RAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKK---LPMVDDLRDESDHENPTRLV 298 RA ++ +D ++++ +P+ + +++ I R K + + ++ D +D + + + Sbjct: 898 RAKYEVKDNEIIVTEIPYTTNRESIVKDIKTLCRESKDNIIRNITNVIDSTDRKGMSITI 957 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + ++ +++ +M L+A T L+ SY +N+N++ LD P V ++ IL EWL FRR + Sbjct: 958 KIKKNT--NIELLMEKLYANTKLQDSYSLNMNIVCLDKIPRVLSIKRILDEWLKFRRMCI 1015 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQAE 415 R NY + +LH+L + +ID ++ I RN D+ L F + + QAE Sbjct: 1016 SRVSNYDKKDKEHKLHLLNAFKIILTDIDALVHITRNAIDDDDMIKQLQLYFKIDQEQAE 1075 Query: 416 AILELKLRHLAKLEEMKI-RGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 + +KL+ L K ++I + + L++E L+ I E ++NN++ ++LQ Y Sbjct: 1076 YVSNIKLKKLNKNNIIEITEQQITALQQEISDLKNIQNDETRINNIIIQQLQNIRDKYKI 1135 Query: 475 DRRSPLQEREEAKAMSEHD-MLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKA 533 R++ + E+ +++ D + T+VL++ +++ + K D Sbjct: 1136 PRKTEIINVEDIPSVTLEDIKIEDFNPTLVLTEQQYIKKNRVFS---QSQKLKDDDKILQ 1192 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKL--TLPPGATVDHMLMES 589 + + ++ + G L + G+ L L L V ++ Sbjct: 1193 FHQCNNKDDLLLFTNKGNVLIRKVYELDEHKPSTYGDFLPNLLGEHLENDEKVIYISTTK 1252 Query: 590 DDQ-KLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQ 648 + + ++ + G + + ++ ++ VI D +L ++Q Sbjct: 1253 NYKGSVITVFENGNVARIDLKQYKTKQNRQVPMDAYNTDSKLVSISVITD-DTNILLVSQ 1311 Query: 649 AGRMLMFPVSDLPQLS--KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRK 706 G+ L+ S + +G + I + + + + I K K Sbjct: 1312 EGKALIINTSQIRPTKSRNTQGVAGMKID----TEHNKVIGSIIGVTVEDNFDIKTEKSK 1367 Query: 707 IKLRPEELQKVTGER 721 K + G++ Sbjct: 1368 SKFIMLDDIAPNGKQ 1382 >UniRef50_B9SK06 DNA gyrase subunit A, chloroplast/mitochondrial, putative n=5 Tax=Magnoliophyta RepID=B9SK06_RICCO Length = 540 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 180/400 (45%), Positives = 249/400 (62%), Gaps = 14/400 (3%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 LH+ AY+ Y+M V++ RALP + DGLKPV RRI++AM ELGL++ FKK Sbjct: 108 RVVHTELHKEATEAYMAYAMSVLLGRALPDVRDGLKPVHRRILFAMHELGLSSRKPFKKC 167 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 AR VG+VLGK+HPHGDSA Y+A+V MAQ FS R PL+ G GN+G+ D AAMRYTE Sbjct: 168 ARVVGEVLGKFHPHGDSAVYDALVRMAQDFSLRSPLIQGHGNFGSIDA-DPPAAMRYTEC 226 Query: 124 RLSKYSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 RL +E LL++L T D+VPNFD + +EP +LPARLP +LLNG++GIAVGMAT+IPP Sbjct: 227 RLEALTEAVLLADLELDTVDFVPNFDDSQKEPSLLPARLPTLLLNGSSGIAVGMATNIPP 286 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HNL E+ ALI P+ TL +LL+ + GPD+PT I+ I + Y GRG + +R Sbjct: 287 HNLGELVDVLCALIHNPEATLQELLEYMPGPDFPTGGLIM-GNLGILEAYRTGRGRIIVR 345 Query: 243 AVWKKE-------DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 + E AV+I +P+Q + A ++E+IA + NK L V D+RDESD Sbjct: 346 GKTEVESLDSKTKRTAVIIKEIPYQTNKASLVEKIAELVENKNLDGVSDIRDESDRSGMR 405 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 ++ V R D V+N+L+ T L+ S+ N+ I DG+P L ++L FR Sbjct: 406 IVIEVKR--GSDPSIVLNNLYRLTPLQSSFSCNMVGIL-DGQPKQMGLKDLLQASY-FRC 461 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRN 395 V RR ++L + +R HI+EG+++ N+D VI II+ Sbjct: 462 SVVERRARFKLLQAQERRHIVEGIVIGLDNLDGVIRIIKE 501 >UniRef50_A4T3N2 DNA gyrase/topoisomerase IV, subunit A n=6 Tax=Mycobacterium RepID=A4T3N2_MYCGI Length = 716 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 190/738 (25%), Positives = 317/738 (42%), Gaps = 58/738 (7%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 ++ + E+ + L +++Y + DRA+P DGLKP QRR++Y M E L K +K Sbjct: 10 ELVLDQSADEYWNHYQLTFALYSVSDRAIPSAFDGLKPGQRRLLYQMHESRLLPGNKPQK 69 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 S++ V G HPHG ++ Y A LMA F R ++DGQG + AA RYTE Sbjct: 70 SSKICSAVTGNLHPHGGASMYGAAALMAADFQ-RVKVIDGQGAFPRIQG-DIPAADRYTE 127 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 RLS L +EL V FDG EP +LPA+ P +L NG GIA G AT +P Sbjct: 128 MRLSAPGAALTAELDSHAVPMVATFDGEWTEPTVLPAQWPVLLCNGAVGIAEGWATKVPA 187 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HN REV A AL+ P T D+L+ ++ GPD+ A +I +R+ GRG +R Sbjct: 188 HNPREVMAACRALLKTPNMTDDRLVKLIPGPDWGCGASVI-GTDGLREYITTGRGLFTVR 246 Query: 243 AVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 + +I+ LP V+ V ++I A + + ++ V D+ D +D N R+V+ + Sbjct: 247 GTVSVDGKNCIITELPPGVASGTVQDRIRALVESGEMAGVADMSDLTDRRNGLRIVVTAK 306 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRL 362 +Q+ + L A T LE S+ +L + + P ++ E+++ +L R V R Sbjct: 307 RGH-SAEQIRDQLLALTPLESSFAASLVALDENRVPRWWSVRELIAAFLSLRDSVVLHRS 365 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE---DEPKPALMSRFGLTETQAEAILE 419 YRLEKV R H++ GL+ L+ID + IIR D+ + L RF + QA+ +L Sbjct: 366 EYRLEKVTARRHLVAGLMTIHLDIDTAVAIIRASDTVDDARLGLQERFAIDAVQADYVLA 425 Query: 420 LKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD---R 476 L+LR L KL+ ++++ E +L+ E L ++++ ++ +EL A+ + R Sbjct: 426 LQLRRLTKLDVIELQAEAEKLDAEFAALTELVSNPDARRKVIDQELVETAKLFKGPEYDR 485 Query: 477 RSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVK 536 R+ L A + + P E ++ D Sbjct: 486 RTVLDYDATPVAANNSEDGPRERKV--------------------NAAWRLDDRGVF--- 522 Query: 537 GKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHML---MESDDQK 593 + + G + D + G G P + +P + +L + + Sbjct: 523 -SDSHGTLLSSGLGWAVWTDG-RIKFTTGGGLPFKIR-DIPVSPDITGLLQSGVLAPGSH 579 Query: 594 LLMASDAGYGFVCTFNDL-----VARNRAGKALITLPENAHVMPPVVI-EDASDMLLAIT 647 L + + G + AG L+ V+ + + + +L+I+ Sbjct: 580 LALITRRGRVLRIDPAAVNPQGAAGNGVAGVKLVADDPEDRVIAALPVSCANGEAILSIS 639 Query: 648 QAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKI 707 + + V+D+P KG+G + +GED L + + Sbjct: 640 EKSWKVT-EVADIPV--KGRGGAGVGFHP--FGKGEDALLSAAISATGYV--------RG 686 Query: 708 KLRPEELQKVTGERGRRG 725 ++ G Sbjct: 687 TRTVRAEKRAKASIKGSG 704 >UniRef50_UPI0001976864 DNA gyrase/topoisomerase IV, subunit A n=1 Tax=Bacillus subtilis subsp. subtilis str. NCIB 3610 RepID=UPI0001976864 Length = 664 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 174/627 (27%), Positives = 314/627 (50%), Gaps = 25/627 (3%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 + + EN + YS Y+++DRALP + DGLKPV RRI+Y+M L + KF KSA Sbjct: 4 TNKNIEQIIENNMMEYSAYILLDRALPDLRDGLKPVHRRILYSMY---LQKAFKFTKSAN 60 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKS-FAAMRYTESR 124 G V+ K HPHG + Y +MV M Q + P+++G+GN+G AA RY+E + Sbjct: 61 VAGQVM-KLHPHG--SSYGSMVGMVQKDRHIIPMLEGKGNFGQYTSRDLMPAADRYSEVK 117 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 LS+ S ++ + D++ N+DGT++ P++LP + P+IL +GI VG ++ IP N Sbjct: 118 LSEISIDMMQNFDKNVVDFIDNYDGTMKMPEVLPVKFPSILAYSNSGIGVGFSSSIPSFN 177 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 L+E+ +A + I+ + T V PD+ T I+ R++ E GRG+V++R Sbjct: 178 LKELTEAIVKYIETGEKT-------VLVPDFATGGLIVKEDNVFRQLNEEGRGTVKIRGK 230 Query: 245 WKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 + + I+ +P+ + ++E+I + KL V D++D + + + Sbjct: 231 AEIVKNEIHITEIPYSTTREAIIEKIVELNKAGKLKEVTDVKDLTGLKGMLITI--TARR 288 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 364 DM+ ++ L+ T L+ ++ N+NM +D P V + + + +WL +R ++R L++ Sbjct: 289 NTDMNVLLEKLYKFTPLQSTFSANMNM-LVDDLPKVLGVWQTIDKWLEWRTTCIKRGLSH 347 Query: 365 RLEKVLKRLHILEGLLVAFLNIDEVIEIIRNE--DEPKPALMSRFGLTETQAEAILELKL 422 +E + ++LH+L+GL L+IDE IEIIR D+ +P L FG+ QA+ + +KL Sbjct: 348 DIETMTRKLHLLQGLEKVLLDIDEAIEIIRRSSQDQIEPNLQKHFGIDFEQAKEVANMKL 407 Query: 423 RHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQE 482 R++ + +K + + EK + + I+ S+ K+N ++ K L + YG +RR+ + E Sbjct: 408 RNINREYIIKKIEDIDKFEKTIENYKMIVKSQDKINQIIIKGLNETKEKYGKERRTKIVE 467 Query: 483 REEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQP 542 E K + + +P+ VTI L++ G+ KG+ N K GD + ++ Sbjct: 468 LTEVKPVRLVEEVPNYAVTIYLTKEGYCYKFKGN----QEPNLKPGDEVLKVFETENKAE 523 Query: 543 VVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLMESDDQKLLMASDA 600 ++ S + ++ + R G L + V + +++S + ++ A Sbjct: 524 ILIFGSDRVCHKVELKDIDETRANALGTYLPNMIRDKNITIVSYSILDSTHKFIIAAYSN 583 Query: 601 GYGFVCTFNDLVARNRAGKALITLPEN 627 K L ++ Sbjct: 584 NRIAKINLEAFQGNRTILKNSYCLKQD 610 >UniRef50_C0QRN3 DNA gyrase subunit A n=9 Tax=cellular organisms RepID=C0QRN3_PERMH Length = 1217 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 178/651 (27%), Positives = 327/651 (50%), Gaps = 45/651 (6%) Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE+RL+K + +L+++ + T D NFD +L EP++LPA+ PN++ NG +GIAVG++T+I Sbjct: 534 TEARLTKLAMEMLADIDKNTVDMKENFDASLMEPEVLPAKFPNLICNGASGIAVGLSTNI 593 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PPHN EVA+A L + P T+++L ++GPD+PT +IT EI KIY +GRGSV Sbjct: 594 PPHNFSEVAEALKYLAEFPNATVEELCQFIKGPDFPTGGILITPFEEIVKIYTDGRGSVT 653 Query: 241 MRAVWKKE-----DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 ++ + E ++I +P+QV+ ++++IA +R + + DLRDESD + Sbjct: 654 VKGKARIERLPGNRHRIIIYEIPYQVNKVELIKRIAELVRKGQEKGISDLRDESDRDGIR 713 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRR 355 +V + R D ++V+ L+ T L+KS INL + + +P +L +L E++ R Sbjct: 714 IVVELKRE--ADPEKVLKKLYRRTQLQKSIPINLTV-LVGKQPKTVDLKGLLQEFIKHRV 770 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE---PKPALMSRFGLTET 412 D + RR + LEK RLHI+EGLL A N D VI+I+R+ + + L+ F L++T Sbjct: 771 DVITRRTLFDLEKAENRLHIVEGLLKALENADRVIDIVRSSKDVSSARSQLVEEFELSDT 830 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QA+AIL+++L LE K+ E +L + ++ Q IL+SE + + +E+ + + Sbjct: 831 QAQAILDMRLSRFTALEGDKLYQEADDLRLKIEEYQRILSSEEEKIRVFIEEIDELLEKF 890 Query: 473 GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKG---------HDIDAPGL 523 GD+R++ + E +EA E + + ++ S R ++ Sbjct: 891 GDERKTVIVEEKEAGLTFEEHYI----LAVLSSGRILNRRIDDDADKKDIFQKVMNEVVS 946 Query: 524 NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVD 583 + K G+ + + +S+ P+ F+ G++Y LP G+ + + G V Sbjct: 947 SVKPGEKLISVQEVESSIPIAFITDKGKAYWSLVADLPKGEGR-------INIDEGEIVG 999 Query: 584 HMLMES-DDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM 642 ++ +L + + G ++ D+ +++ ++I L E+ V+ +D + Sbjct: 1000 TAFKGEGEEDRLFILTKNGIIKRMSYEDIFYKSQN-HSIIPLAEDDCVVTA-FADDHPSL 1057 Query: 643 LLAITQAGRMLMFPVSDLPQLS-KGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 + T+ G +L+F + + K KG + I++ D +A +++ + + Sbjct: 1058 IGVYTRKGDLLLFERNQVRVTGDKAKGVEAIDLDEG------DTVAGGFLINSEDLIMTV 1111 Query: 702 VGKRKIKLRPEELQKVT----GERGRRGTLMRGLQRIDRVEIDSPRRASSG 748 KL +E +R ++G + L + D + + P Sbjct: 1112 TKNGYTKLVRKEEFFTKEGKVKKRAQKGLMAVKLGKDDFLSVAVPVELDET 1162 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 69/120 (57%), Positives = 94/120 (78%), Gaps = 2/120 (1%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 MS++ ++ + E ++AYL+Y+M VI+ RA+P + DGLKPVQRRI+YAM+ELGL + + Sbjct: 1 MSEIIKQ-PIEEEVKSAYLDYAMSVIVGRAIPDVRDGLKPVQRRILYAMNELGLYPNKPY 59 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VG+VLGKYHPHGD++ Y+A+V MAQ F+ RYPL+ GQGN+G+ D AAMRY Sbjct: 60 KKSARVVGEVLGKYHPHGDTSVYDALVRMAQDFTLRYPLIQGQGNFGSIDG-DPPAAMRY 118 >UniRef50_B1ZME1 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Opitutaceae RepID=B1ZME1_OPITP Length = 708 Score = 434 bits (1116), Expect = e-120, Method: Composition-based stats. Identities = 162/709 (22%), Positives = 289/709 (40%), Gaps = 85/709 (11%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 E L N +L+Y+ YVI+DRA+P I DGLKPVQRRI++ M E+ +F K Sbjct: 60 QEEEAPLAVNYRNWFLDYASYVILDRAVPHIDDGLKPVQRRILHTMWEM---EDGRFHKL 116 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTES 123 A VG + ++HPHGD++ A+V + Q R LV+ QGN+G AA RY E+ Sbjct: 117 ANIVGATM-RFHPHGDASIGAALVGLGQ----RGFLVEPQGNFGNLLTGDDAAAPRYIEA 171 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 RL+ +++ +L T W ++DG +EP LPA+ P +LL G GIAVG+AT I PH Sbjct: 172 RLTAFAKDVL--FNPKTTPWQLSYDGRAREPVTLPAKFPIVLLEGAEGIAVGLATKILPH 229 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR--GSVRM 241 N ++ +AAI + + PD+PT S Y +G G V++ Sbjct: 230 NFNDLCRAAINHLQGKTFRI--------YPDFPTGGVADFSE------YNDGERGGKVKI 275 Query: 242 RAVWKK-EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 RA + + I+ LP + ++E I A K+ +R D+ ++V Sbjct: 276 RAKIEIRSKYLLAITELPFGSTTESLIESILAANAKGKIK----IRHVDDNTADAVEILV 331 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRR 360 D ++++ L+ T + + +I D +P + EIL + + ++R Sbjct: 332 HLPQGSDPEKLIQQLYVFTACQTNLSPAACVI-EDDKPHFLGVREILKRSVDKTKALLKR 390 Query: 361 RLNYRLEKVL--------KRLHILEGLLVAFLN---IDEVIEIIRNEDEPKPALMSRFGL 409 L R ++ +R+ I E + V++ IR +P + R + Sbjct: 391 ELEIRQAELEQQWHWDSLERIFIEERIYRRIEKSKTWQSVLDEIREGLQPFLKQLRR-PV 449 Query: 410 TETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADA 469 T+ + E++++ ++ + ++E E + + A+ + + + Sbjct: 450 TDDDITRLTEIRIKRISAYNRFQADEAIKKIEAELRETK---ANLKALTAYAVAWFEQLQ 506 Query: 470 QAYGD--DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKA 527 + YG RR+ E E+ A + +Q +V G GLN++ Sbjct: 507 EKYGKGLKRRTSYDEIEQINAAE----------VVSANQRLYVNREDGFI----GLNWRQ 552 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLM 587 + + VV + G ++ + G + P + M Sbjct: 553 HEYVQD---CTILDSVVCLMRDG---SLKVSKVAEKVFMGRDIIHCAVFPKDGDPNFYTM 606 Query: 588 ESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM----- 642 D++ S + L +R + E + V+ + + +M Sbjct: 607 VYQDKE----SGKAFAKRFQIGGL---SRDKLYSLVKSEGSRVVYLEISKTEKEMPKKLR 659 Query: 643 LLAITQAGRMLM---FPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLA 687 + ++G + F + +P S+ KG + P + R + LA Sbjct: 660 IFIDGRSGARVREFDFELDRVPVSSRSAKGLTVTKWPVKDVKRADLALA 708 >UniRef50_C3JAA3 DNA gyrase subunit A n=3 Tax=Bacteria RepID=C3JAA3_9PORP Length = 899 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 165/791 (20%), Positives = 308/791 (38%), Gaps = 98/791 (12%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 +D+ +L + +L+Y+ YVI++RA+P I DGLKPVQRRI+YAM L + Sbjct: 40 TDVVRLHSLPQMYRTWFLDYASYVILERAVPHIEDGLKPVQRRILYAMQ---LFENGHLH 96 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K A+ VG + +HPHGD++ +A+V + Q + L+D QGNWG AA RY Sbjct: 97 KVAKIVGQTM-AFHPHGDASINDALVQLGQ----KGFLIDTQGNWGNTLTGDEAAAGRYI 151 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E++LS + +L +W +DGT EP LP R P +L G GIAVG+++ I Sbjct: 152 EAKLSSLALEVL--FDSKLTEWKRTYDGTADEPVALPVRFPLLLAQGAEGIAVGLSSRIY 209 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR--GSV 239 PHN +E+ +AAIA + L PD+PT + + Y +G G++ Sbjct: 210 PHNPKELLEAAIAYLRGESFEL--------YPDFPTGGLLDVDK------YNDGHRGGAL 255 Query: 240 RMRAVWK-KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + RA + +D + I+ LP + ++E I K+ + + D + R+ Sbjct: 256 KCRAKIEKIDDRVLSITELPFGKTTTSLIESILKANEKGKIK-IKHIDDMTAATADIRIQ 314 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + V D+ ++ L+A TD E N +I +G P + ++L ++ + Sbjct: 315 L---PAGVSTDKTIDGLYAFTDCEVGLSPNACVI-KEGTPVFLGVSDLLKYSADRTKELL 370 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNID-------------EVIEIIRNEDEPKPALMS 405 +LNYRL +V L + N + ++ +R E L+ Sbjct: 371 VAQLNYRLGEVQDALVTASLERIFIENRIYKDKPFEEAACEADALDHVRKRIEAMEDLVF 430 Query: 406 RFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKEL 465 +TE + +LE+K+ + + K ++L ++ ++ LA Sbjct: 431 VRPITEADLKRLLEIKMARILRFNIEKHEERIAQLMRDARTIEKHLAHST---QYTIDYY 487 Query: 466 QADAQAYGDD--RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGL 523 + +G R++ + +A I ++ + + G Sbjct: 488 TRLLKEFGAGWTRKTTIARFGTIEATK----------VIEATEKLYFDR----EGGFAGT 533 Query: 524 NYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPL-TGKLTLPPGATV 582 K + + ++ + G Y I I G+GE L + T+ Sbjct: 534 GLKNAEFVA---ECSLLDEMIVIFRNGT-YRISKIEEKKFIGRGEVLYINRFRRNDNRTI 589 Query: 583 DHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDM 642 +++ + + C+ + LI+ E + + + Sbjct: 590 YNIIYRQGKRGPWL------IKRCSITGI--SRDKDYNLISDEEGSRITYFSANPNGEAE 641 Query: 643 LLAITQAG----RMLMF--PVSDLPQLSKGKGNKIINIPSAEAA----RGEDGLAQLYVL 692 + I R+L F S++P +G ++ + RG L + Sbjct: 642 TVRIALKPQPRMRVLTFEKSFSEVPIRGRGAKGNLVTRAEVQRITLKQRGASTLGGRKIW 701 Query: 693 PPQSTLTIHVGKR-----------KIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDS 741 + + I+ + ++ + ++ T + G G R+++ + + Sbjct: 702 FDRDVMRINYNGQGEFIGEFEAEDRLLVFAKDGSVYTTDFGESNHFPGGTTRVEKFDANK 761 Query: 742 PRRASSGDSEE 752 D E+ Sbjct: 762 VWSVVYFDKEQ 772 >UniRef50_D1QVZ0 DNA topoisomerase 4 subunit A n=2 Tax=Prevotella RepID=D1QVZ0_9BACT Length = 978 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 161/756 (21%), Positives = 301/756 (39%), Gaps = 98/756 (12%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 L +N +L+Y+ YVI++RA+P I DGLKPVQRRI+++M + ++ K A VG Sbjct: 114 LSGMYKNWFLDYASYVILERAVPHIEDGLKPVQRRILHSMKRMD---DGRYNKVANIVGH 170 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 + ++HPHGD++ +A+V M Q L+D QGNWG AA RY E+RLSK++ Sbjct: 171 TM-QFHPHGDASIGDALVQMGQKD----LLIDCQGNWGNILTGDRAAAPRYIEARLSKFA 225 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 ++ T DW ++DG +EP LP + P +L G GIAVG+++ + PHNL E+ Sbjct: 226 LDVV--FNPKTTDWQLSYDGRNKEPITLPVKFPLLLAQGAEGIAVGLSSKLLPHNLNEIC 283 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR--GSVRMRAVWK- 246 AAI + L PD+PT I S+ Y +G+ G +++RA + Sbjct: 284 DAAIKYLRGEDFQL--------YPDFPTGGAIDVSK------YNDGQRGGVLKVRAKIEK 329 Query: 247 KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRV 306 ++ +VI +P + +++ I + K+ + D+ + V + V Sbjct: 330 LDNKTLVIREIPFSKTTTTLIDSILKAIDKGKIKA----KRVDDNTAAEVEIQVHLAPGV 385 Query: 307 DMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRL 366 D+ M+ L+A +D E + N +I D +P + ++L + +R+ L R Sbjct: 386 SSDKTMDALYAFSDCEINISPNCCVI-EDNKPCFLTVSDVLRHGVDRTMGLLRKELQIRR 444 Query: 367 EKVLKRLHILEGLLVAFL-------------NIDEVIEIIRNEDEPKPALMSRFGLTETQ 413 ++L++L + +++E + + + P R +T Sbjct: 445 GELLEQLFFASLERIFIEQRIYKEKKFEQAADMNEAVAFVDLKLTPFKPDFIR-EVTRDD 503 Query: 414 AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG 473 ++E+K++ + K + K + ++ E +++ L M ++ YG Sbjct: 504 ILRLMEIKMQRILKFNKDKADELIARIKAEVAEIEHDL---EHMTDVTINWFMFIKNKYG 560 Query: 474 D--DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSF 531 + R + ++ + + + +Q ++ +G G K + Sbjct: 561 NEHPRHTEIRSFDTIDSAK----------VVEANQKLYINRQEGFI----GTGLKKDEFV 606 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDD 591 ++ G+ I G+G + ++ D Sbjct: 607 ---CNCSDIDDIIIFYKNGKYKIIKVAD-KIFVGKGIIWLQVFK-KNDKRTIYNVVYKDG 661 Query: 592 QKLLMASDAGYGFVCTFN---DLVARNRAGKA---LITLPENAHVMPPVVIEDASDMLLA 645 ++ T + DL A K A ++ V+ D Sbjct: 662 REGYYYMKRFNVTSMTRDREYDLTAGTPGSKVNYFTANPNGEAEIIKVVLEPDP------ 715 Query: 646 ITQAGRMLMFPVSDL-PQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGK 704 + R +F D + K +G K + + R L Q T+ G Sbjct: 716 --KKKRQNIFLERDFSKVMIKSRGAKGVILTKQSIHR--------IGLKSQGHSTL--GG 763 Query: 705 RKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEID 740 RK+ P +++++ E G + DR+ + Sbjct: 764 RKVWFDP-DVKRINYE--EHGRFLGEFFDEDRILVI 796 >UniRef50_A4CLF9 DNA topoisomerase IV subunit A n=21 Tax=Bacteria RepID=A4CLF9_9FLAO Length = 907 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 154/758 (20%), Positives = 293/758 (38%), Gaps = 90/758 (11%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 ++ + ++ +L+Y+ YVI++RA+P I DG KPVQRRI++A+ E+ ++ Sbjct: 15 AEQEALTRVTGMYKDWFLDYASYVILERAVPAIEDGFKPVQRRIMHALKEMD---DGRYN 71 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K A VG + +YHPHGD++ +AMV + Q L+D QGNWG AA RY Sbjct: 72 KVANVVGQTM-QYHPHGDASIADAMVQIGQKD----LLIDTQGNWGNILTGDGAAASRYI 126 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+RLSK++ ++ +W ++DG +EP LP + P +L G GIAVG++T I Sbjct: 127 EARLSKFALEVV--FSPKITEWQLSYDGRKKEPVHLPVKFPLLLAQGAEGIAVGLSTKIL 184 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR--GSV 239 PHN E+ A+I + + L PD+PT I Y +G G V Sbjct: 185 PHNFIELIDASIKHLQGKRFKL--------YPDFPTAGIIDIGN------YNDGERGGKV 230 Query: 240 RMRAVW-KKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 R+RA +++ +VIS +P+ + + +++ I K+ + D+ + Sbjct: 231 RVRARIAQQDKNTLVISEIPYGTNTSSLIDSILKANDKGKIKIKK----IEDNTAAEVEI 286 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 +V + + D+ ++ L+A T E S L I D +P + E+L + + Sbjct: 287 LVHLPSGISPDKTIDALYAFTACETSISP-LGCIIEDNKPVFMGVSEMLRRSTDHTVELL 345 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLN-----------IDEVIEIIRNEDEPKPALMSRF 407 + L L ++ ++ H + N + VI I +P + R Sbjct: 346 QAELEILLGELQEQWHAASLERIFIENRIYRDIEEEETWEGVIAAIGKGLKPHTGHLRR- 404 Query: 408 GLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQA 467 +TE + E++++ +++ + K + LEK + + LA + + + Sbjct: 405 EVTEEDIVRLTEIRIKRISRFDLDKAQEHLDNLEKRIAETKHHLA---HLTDYAIDYFRE 461 Query: 468 DAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKA 527 + +G R + D + + V I +++ +V +G G + + Sbjct: 462 LKKNFGAGRERK-------SEIRVFDEIEATKVVIRNTKL-YVNREEGFI----GTSLRK 509 Query: 528 GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGK-LTLPPGATVDHML 586 + ++ +G+ S G+ + + + + Sbjct: 510 DEYVTD---CSDIDDIIVFTKSGQMMITRVD---SKTFVGKNIIHVAVYKKKDKRTTYNM 563 Query: 587 MESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI 646 + D + T + L + V+ + ++ + Sbjct: 564 IYKDGRGGPSYVKRFNVTAFTRDKLYDLTTG-------KAQSEVLYFTANPNGEAEVVTV 616 Query: 647 ----TQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHV 702 + + + L + + + KG+ K + R E L L P Sbjct: 617 NLRQSGSIKKLKWDLDFADVMIKGRNAKGNIVTKYPVKRIELKEKGLSTLKP-------- 668 Query: 703 GKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEID 740 + + RG L+ DR+ I Sbjct: 669 -----RKIWFDETVQRLNVDGRGELLGQFTPEDRLLIV 701 >UniRef50_D1N6B5 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Bacteria RepID=D1N6B5_9BACT Length = 877 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 158/718 (22%), Positives = 288/718 (40%), Gaps = 100/718 (13%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 + +L Y+ YVI DRA+P + DGLKPVQRR+++A+ ++ + K A VG+ Sbjct: 48 FRTMMDRNFLEYASYVIKDRAIPDVDDGLKPVQRRVLWALYQV---YDGRTHKVANVVGN 104 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 + YHPHG+++ +A+V++A + + QGN+G AA RY E LS Sbjct: 105 TM-HYHPHGNASIEDALVVLA----NKEYYITRQGNFGNILTGSPAAAGRYIECSLSPLG 159 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 +L ++V +DG EP LPA++P++L+ G+ GIAVGMAT I PHN E+ Sbjct: 160 HEVL--FNNDITEFVDTYDGRGVEPVTLPAKVPSLLMLGSDGIAVGMATKIMPHNFNELL 217 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED 249 +A IA++ + L PD+ + Y +G G + +RA + Sbjct: 218 EAEIAVLRGEEFEL--------YPDFQQGGLMDVRE------YNDGNGKITLRAKIEIVG 263 Query: 250 GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMD 309 ++I +P S ++ I K+ + + D + + ++V + D + Sbjct: 264 RDLIIREIPATTSTETLVASIEKAAEKNKIK-ISSVNDYTTDKVEIKVV---PTRGYDPE 319 Query: 310 QVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKV 369 + M L+ TD S +N+ +I + RP ++ E+L + ++R L L K Sbjct: 320 KTMQGLYMYTDCSVSISVNMTVI-RENRPVQMSVSEVLRRNADKLLEYLKRELEIDLAKQ 378 Query: 370 LKRLHILEGLLVAFLN-IDEVIEIIRNEDE----------PKPALMSRFGLTETQAEAIL 418 H + F N I + IE ++E E P L+ R +T+ + +L Sbjct: 379 EDLFHAKTLAQIFFENRIYKKIEECKSEKEEYTEVHAGLAPFRHLLRR-DVTDQDIDKLL 437 Query: 419 ELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD--DR 476 L +R +++ + K + E +E+ + ++++ L S + L+ YG R Sbjct: 438 ALPVRRISRFDIEKNQRELAEVLAKMEEIKKNLGS---LKKYAINYLRKLLDKYGKDFPR 494 Query: 477 RSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVK 536 R+ ++ E + + ++GW R G + K+ D + Sbjct: 495 RTEIEHFE---------KIDRREAALNNIKVGWDRKN-----GYVGTSIKSDD----ILA 536 Query: 537 GKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLM 596 + V+ +G I LP + + D +K Sbjct: 537 CNEFDRFLCVEKSGSY---KVIALPPEK------------------LFIGKLYDFRKYDA 575 Query: 597 ASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPP----VVIEDASDMLLAITQAGRM 652 A++ G + T + R L + ++ P ++ +D + +T AG Sbjct: 576 ATEFGVIYRETKSGKYYGKRTAIGGFILDKEYNLCPVGCKLELLTPRADAVYMLTVAGAR 635 Query: 653 LMFPVSDLPQL------SKGKGN-----KIINIPSAEAARGEDGLAQLYVLPPQSTLT 699 ++L + K +G I+ I E+ A +T Sbjct: 636 GKQQQTELNLMELPARSPKARGILISSKPIVKITHNRYLTPEELAALSLKTESDDEIT 693 >UniRef50_C9RLW5 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLW5_FIBSS Length = 846 Score = 424 bits (1090), Expect = e-117, Method: Composition-based stats. Identities = 156/722 (21%), Positives = 288/722 (39%), Gaps = 84/722 (11%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 L + +L+Y+ YVI+DRA+P+ DGLKPVQRRI+++M E N +++K A VG Sbjct: 18 LERLYDGWFLDYASYVILDRAVPYFEDGLKPVQRRILHSMFE---NHDGRYQKVATIVGR 74 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 + YHPHGD++ +A+V + Q + L+D QGNWG P AA RY E RL+ ++ Sbjct: 75 TM-AYHPHGDASIGDALVGLGQ----KNLLIDTQGNWGNPYTGDRAAAPRYIEGRLTPFA 129 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 ++ T +W+P++DG +EP LP + P +L G GIAVG++T I PHN RE+ Sbjct: 130 VDVV--FNPETTEWIPSYDGRSEEPVTLPVKFPLLLAQGVDGIAVGLSTSILPHNFRELC 187 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR--GSVRMRAVWK- 246 +A+IA + K TL PD+ T I S Y +G+ G V++RA + Sbjct: 188 EASIACLRGKKFTL--------YPDFFTGGIIDVSD------YNDGQRGGKVKVRAKIEK 233 Query: 247 KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRV 306 ++ + I +P+ + ++E I K+ ++ D+ + ++V Sbjct: 234 VDNKTLAIREIPYGTTTVSLIESIVKANDKGKIK----IKHVDDNTSQGVEILVHLQPGT 289 Query: 307 DMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRL 366 D ++ L+A TD EKS + +D P + +IL + L L Sbjct: 290 DPQVAIDALYAFTDCEKSLSP-CTCVIIDKHPKFVGVSDILKLNTEHTVKLLEWELANEL 348 Query: 367 EKVLKRLHILEGLLVAFLN-----------IDEVIEIIRNEDEPKPALMSRFGLTETQAE 415 + + + H+ + +++I ++R P + R +T+ + Sbjct: 349 KHLEDKWHMTTLEKIFIEKEVYEVIKKAKDREQIIRLVREGLTPYLKRLHRQTVTDEEIG 408 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY--G 473 ++E+ +R ++ + K ELE+ + + ++ + + + + Y G Sbjct: 409 KLIEIPIRRISHYDREKADQLLQELEENIAKCK---YNQEHIIDYAVNHFKNILKKYGEG 465 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKA 533 +RR+ + E + A+ + +Q +V +G G K + Sbjct: 466 KERRTQIAEFGKVNAVH----------VALANQKLYVNRKEGFV----GTGMKKE---EY 508 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQK 593 ++ + G + G+ L K + +++ + Sbjct: 509 LFDVSEYDDLIVFKADGSFKVVKVSD-KDFVGKDIILVEKFNKDDERHIYNVIHQDGKDG 567 Query: 594 LLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGR-- 651 G V D + ++ + ++ + R Sbjct: 568 YAYIKRFNVGGVTRDKDYYMGKN--------KPGSKILYMSSNMNGEAEVVEVILKPRPR 619 Query: 652 -MLMFPVS--DLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYV----LPPQSTLTIHVG 703 L F V ++ +G GN + P R G++ L S + Sbjct: 620 IKLNFEVDFSEVEVKGRGAIGNIVSKYPVKTVKRLRKGVSTLGARVLYFDAPSGIVSTQK 679 Query: 704 KR 705 K Sbjct: 680 KG 681 >UniRef50_A5K033 DNA GyrAse a-subunit, putative n=2 Tax=Plasmodium RepID=A5K033_PLAVI Length = 1263 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 143/504 (28%), Positives = 257/504 (50%), Gaps = 38/504 (7%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK-FKKSAR 65 + + E +L+Y+ ++I++R L DGLK VQRRI+++M E+ A + +KK AR Sbjct: 152 DVEICELLSKNFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGAEKRSYKKCAR 211 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 VG+V+GKYHPHGD + Y+A+V +AQ L++G GN+G+ + + AAMRYTE+++ Sbjct: 212 IVGEVIGKYHPHGDKSVYDALVRLAQRHHNSNVLINGYGNFGSVE--YNAAAMRYTEAKI 269 Query: 126 SKYSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 S + LL E+ + ++V NFDG EPK+ +++P +L+NG +GIAV + ++IP HN Sbjct: 270 SNFCYDVLLDEINEENVEYVRNFDGNEIEPKVFCSKVPLLLINGCSGIAVSILSNIPCHN 329 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 L +V I+ + P D L I++GPD+ T II+ E++ +Y GRGS+ +R+ Sbjct: 330 LVDVINCTISFLLNPSIREDHLSAIIKGPDFTTGGIIISKPNELQNVYHTGRGSIEIRSN 389 Query: 245 WKKE---------------------------DGAVVISALPHQVSGARVLEQIAAQMRNK 277 E +VI LP V ++E + + K Sbjct: 390 VFLEYTKDDKQYVTHVNNLANLHPEDIDSRGSKKLVIKNLPPNVKPNELIENMINILNEK 449 Query: 278 KLP---MVDDLRDESDHENPTRLVIVPRSNRVD-MDQVMNHLFATTDLEKSYRINLNMIG 333 K ++ +RDES+ E+ ++ + ++ +V+ ++ ++ +F T ++ +Y N IG Sbjct: 450 KNEHENILQKIRDESEKEDMRIVLELRKNTQVEQINDFLSFIFKYTQMQTTYHCNFVCIG 509 Query: 334 LDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEII 393 +L L W R +R L + + + K LHI++ ++ I E+I + Sbjct: 510 HQNSYTQFSLKSFLQLWCENRIKFIRNNLTIKNKNLQKELHIIDLYILIQKKILEIISFL 569 Query: 394 RNE---DEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450 + +E K F L + Q + IL +K++ L ++ + + ++ + + Sbjct: 570 QKNQNIEEIKNFFKKNFQLNDYQIQHILSMKIQKLVNIKNVHFGPHKEKILTRMRDNRDL 629 Query: 451 LASERKMNNLLKKELQADAQAYGD 474 +A ++ L+ +EL YG Sbjct: 630 IADVDRIKRLIIEELAYIKNKYGT 653 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 79/214 (36%), Gaps = 11/214 (5%) Query: 531 FKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHMLME 588 K ++ ++ ++ DS ++Y +D L ++ +G P+ + + M Sbjct: 943 VKKSILCRNKDRLLLTDSQNKAYVLDVCDLQTSSYDSKGTPINQVVHCSKS--ITGMAKF 1000 Query: 589 SDDQKLLMA-SDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAIT 647 + +K L+ S+ G + + + + + G L ++ H + SD + T Sbjct: 1001 EESKKYLIVCSENGKMKIINNDVFLKKKKKGIRLFKNKKDIH----FSYCNFSDNCIVGT 1056 Query: 648 QAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRK 706 +G ++ FP+S+ K GNK I++ + + + Sbjct: 1057 ASGHIIQFPLSNFKISKKNSLGNKCISLGKNDKVVDLLTYENDEKSVKKFQIIFLSKGGH 1116 Query: 707 IKLRPEELQKVTGERGRRGTLMRGLQRIDRVEID 740 K+ KV RG+ +M+ +R R Sbjct: 1117 GKMVNLGELKVQKRRGKGYKIMK-FKRAKRGAPI 1149 >UniRef50_B3LCM1 Dna gyrase a-subunit, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3LCM1_PLAKH Length = 1173 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 160/672 (23%), Positives = 306/672 (45%), Gaps = 55/672 (8%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK-FKKSAR 65 + + + +L+Y+ ++I++R L DGLK VQRRI+++M E+ A +KK AR Sbjct: 175 DVEICDLLSKNFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGAEKSSYKKCAR 234 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 VG+V+GKYHPHGD + Y+A+V +AQ L++G GN+G+ + + AAMRYTE+++ Sbjct: 235 IVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLINGYGNFGSVE--YNAAAMRYTEAKV 292 Query: 126 SKYSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 S + LL E+ ++V NFDG EPK+L +++P +L+NG +GIAV + ++IP HN Sbjct: 293 SNFCYDILLDEINDENIEYVRNFDGNEVEPKVLCSKVPLLLINGCSGIAVSILSNIPCHN 352 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 L +V I+ + D+L I++GPD+ T II+ ++++ +Y+ G+G++ +R+ Sbjct: 353 LVDVINCTISFLLDANIRDDELAAIIKGPDFSTGGIIISKASQLQNVYQTGKGNIEIRSN 412 Query: 245 WKKE---------------------------DGAVVISALPHQVSGARVLEQIAAQMRNK 277 E +VI LP V ++E + + K Sbjct: 413 VFLEYTKNDKVQVIHVNDLPNVNAEDIDTRGSKKLVIKNLPPNVKPNELIENMINILNEK 472 Query: 278 KLP---MVDDLRDESDHENPTRLVIVPRSNRVD-MDQVMNHLFATTDLEKSYRINLNMIG 333 K ++ +RDES+ E+ ++ + ++++V+ ++ ++ +F T ++ +Y N IG Sbjct: 473 KNEHENILQKIRDESEKEDMRIVLELRKNSQVEQINDFVSFIFKYTQMQITYHCNFVCIG 532 Query: 334 LDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEII 393 +L L W R + +++ L + + + K LHI++ ++ I E+I + Sbjct: 533 HQNSYTQFSLKSFLQLWCENRINFIKKNLTIKNQNLQKELHIIDLYILIQKKILEIISFL 592 Query: 394 RNE---DEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450 + +E K F L + Q IL +K++ L ++ + + ++ +Q + + Sbjct: 593 QKNQNIEEIKNFFKENFKLNDYQIHHILSMKIQKLVNIKNVDFCTHKEQILARMEQNRDL 652 Query: 451 LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWV 510 +++ K+ L+ +L YG + + K + P + V Sbjct: 653 ISNVDKIKRLIIDQLTYIKNKYGINSVGRFAPPQSVKYRYVYINPPERNHHFKEHSLALV 712 Query: 511 RSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPIT--LPSARG-QG 567 + + G A D K K + LP AR +G Sbjct: 713 NAERD---GPSGYGGDAED-LKGERKISKKDTLSDEIRNQEEQQTPVEDPALPKARNLRG 768 Query: 568 EPLTGKLTLPPGATVDHM-----LMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALI 622 T +D + + ++D L++ + GY + + ++ + Sbjct: 769 VKKIDPTTQYRQTYIDSIHTDVKNVYNNDYVLVLITYGGYVKKIKVAEKLKNHQNNIIKL 828 Query: 623 T-----LPENAH 629 + L EN Sbjct: 829 SNVKYILKENEE 840 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 97/277 (35%), Gaps = 14/277 (5%) Query: 479 PLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGK 538 +E + + P E +V S S +N K ++ + Sbjct: 832 KYILKENEEKKLKDGGAPVEAANVVESGEEGANSMSAKSSSLNAINCYK---VKKSILCR 888 Query: 539 SNQPVVFVDSTGRSYAIDPITLPSAR--GQGEPLTGKLTLPPGATVDHMLMESDDQKLLM 596 + ++ DS ++Y ++ L ++ +G P+ + + M +++K L+ Sbjct: 889 NKDKLLLTDSQNKAYILNVYDLQTSSYDSKGTPINQVIHCSKN--ITGMTKFEENKKYLI 946 Query: 597 A-SDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 S+ G V + + + + G L ++ H + SD + T +G ++ F Sbjct: 947 VCSENGKMKVINNDVFLKKKKKGIRLFKNKKDIH----FSYCNFSDNCIVGTASGHIIQF 1002 Query: 656 PVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEEL 714 P+++ K GNK IN+ + + K+ E Sbjct: 1003 PLANFKISKKNSLGNKCINLGKNDKVVDLLAYDNDEKNVGNFQIIFLSKGGHGKMINLEE 1062 Query: 715 QKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDSE 751 KV ++G+ +M+ +R R + A D E Sbjct: 1063 LKVQKKKGKGYKIMK-FKRAKRDAVLQGEVAKEEDKE 1098 >UniRef50_Q4N468 DNA gyrase subunit A, putative n=2 Tax=Theileria RepID=Q4N468_THEPA Length = 1014 Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 168/544 (30%), Positives = 290/544 (53%), Gaps = 53/544 (9%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 + E L L+++ +++L Y++ +I+ RALP DGLK V RRI++AM L L+ + +++ Sbjct: 96 KESLEYLKLNDYMCSSFLKYALSIILGRALPDSRDGLKVVHRRIIWAMHMLKLDPNGQYR 155 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K A+ VGDVLG YHPH D + Y+A+ ++Q F + PL+DG GN+G+ + AAMRYT Sbjct: 156 KCAKVVGDVLGNYHPHSDKSVYDALCRLSQDFIMKVPLIDGHGNFGS--NNDPPAAMRYT 213 Query: 122 ESRLSKYSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 E RL+ +S++ +L+++ T D++PNFD T EP +LP RLPNIL+NG++GIAVG+AT+I Sbjct: 214 ECRLTNFSKMIMLNDINFNTIDYIPNFDNTNIEPMVLPCRLPNILINGSSGIAVGLATNI 273 Query: 181 PPHNLREVAQAAIALIDQ---------------------PKTTLDQLLDIVQGPDYPTEA 219 PPHN EV A I I ++++ V GPD+PT Sbjct: 274 PPHNPTEVINATIQFIKSHLNTTTETTAETRSDTTVDGLKDDKNVEIVNEVMGPDFPTGG 333 Query: 220 EIITSRAEIRKIYENGRGSVRMRAVWKKEDG----------------------AVVISAL 257 I T+R +RKIYE+G+G+V +++ + E+ ++VI+ + Sbjct: 334 VIRTTREAMRKIYESGKGTVLIQSKFVFEEKFRDVINVYNNFKDIKFKHNSRISIVINQI 393 Query: 258 PHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS--NRVDMDQVMNHL 315 P+ ++E I ++N + V+D++DESD +V + R+ + +++ ++M L Sbjct: 394 PYNTRINDIIENINRNIKNNNIIGVNDVKDESDRNGTRIVVELKRNISSVIEIQEIMAKL 453 Query: 316 FATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHI 375 T E +Y+ N + D +P NL IL WL FR ++R+ + L K+ K L I Sbjct: 454 QRLT--EYNYKCNFITLDQD-KPIRFNLYTILKIWLDFRLKVLKRKYKHLLLKLKKNLDI 510 Query: 376 LEGLLVAFLNIDEVIEIIRN-EDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIR 434 + ++ +LNI+ +I +N + L F L + Q ++++ L LR L +L ++ Sbjct: 511 INAYIIIYLNINTIINSFQNHQKGVYKVLKEEFKLNDDQMKSVMRLTLRQLNQLNIDNLK 570 Query: 435 GEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD-DRRSPLQEREEAKAMSEHD 493 + E K+ + + +L ++ + N + +L + + R + + +E Sbjct: 571 EKSGEYTKQIEFYENVLNNDTNLYNEIISDLTELKDHFKNIKRNTLIIYTDEGSNFETTV 630 Query: 494 MLPS 497 Sbjct: 631 EGVE 634 Score = 47.6 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 49/154 (31%), Gaps = 22/154 (14%) Query: 589 SDDQKLLMASDAGYGFVCTFNDLVAR--NRAGKALITLPENAHVMPPVVIEDASDMLLAI 646 S + L + + GY + ++ + + LI L + V+ + D +L+ Sbjct: 839 SQNPFLFICTKRGYCIKISLRSIMEKFDKKKNVKLIRLHKGDEVVSSCLANDQQHILILT 898 Query: 647 TQA---------GRMLMFPVSDLPQLS-KGKG-------NKIINIPSAEAARGEDGLAQL 689 ++ G+ + ++D+ KGKG K I + + D Sbjct: 899 SKGKHQRHNLYVGKYKLININDIKLQKIKGKGYNILRNSQKSIKKSGGDNSSNLDEAVSC 958 Query: 690 YVLP---PQSTLTIHVGKRKIKLRPEELQKVTGE 720 + + + + + + L+ Sbjct: 959 TNVDKIKEKKNILLISKGGILCKKSLYLKPGLRH 992 >UniRef50_B4D1N9 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1N9_9BACT Length = 745 Score = 410 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 149/710 (20%), Positives = 285/710 (40%), Gaps = 88/710 (12%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 E+ L N +L Y+ YVI+DRA+P I DGLKPVQRR+++ + ++ +F K A Sbjct: 68 EQAPLAVSYRNWFLEYASYVILDRAVPHIDDGLKPVQRRVLHTLWDMD---DGRFHKVAN 124 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 VG + K HPHGD++ A+V + Q R L++ QGN+G + AA RY E+RL Sbjct: 125 VVGATM-KLHPHGDASIEAALVAIGQ----RGWLIEPQGNYGNTLTGDAAAAARYIEARL 179 Query: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 + ++ +L T W ++DG +EP LPA+ P +LL G GIAVG++T I PHN Sbjct: 180 TPFARDVL--FNPKTTVWQQSYDGRTKEPVTLPAKFPIVLLEGAEGIAVGLSTKILPHNF 237 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR--GSVRMRA 243 ++ +AAI + + PD+PT + Y +G G V++RA Sbjct: 238 NDLCRAAINHLQGKTFRIL--------PDFPTGGTGDFTD------YNDGERGGKVKVRA 283 Query: 244 VWKKEDGA-VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 ++ + + I+ LP+ V+ ++E I A K+ ++ D+ ++V Sbjct: 284 RIEEHSKSVLCITELPYGVTTESLIESILAANAKGKIK----IKHVDDNTASKVEILVHL 339 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDG-----RPAVKNLLEILSEWLVFRRDT 357 D+V+ L+ T + +I D RP + +IL + ++ Sbjct: 340 PPGSQPDKVVQQLYVFTSCQVQLNPAACVIVRDPETGEDRPQFMGVRDILKASVDATKEL 399 Query: 358 VRRRLNYRLEKVL--------KRLHILEGLLVAFLN---IDEVIEIIRNEDEPKPALMSR 406 +++ L +L ++ +R+ I E + + V+E IR +P + R Sbjct: 400 LKQELEIKLGELEQQWHWDSLERIFIEERIYRRIEKSQTWESVLEEIRTGLKPFIGNLRR 459 Query: 407 FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ 466 +TE + E++++ ++ + ++E+ + + L + + + Sbjct: 460 -EVTEEDIVRLTEIRIKRISAYNRFQADEALKKIEEAIKETKHHLKN---LVAYAVDWFE 515 Query: 467 ADAQAYGD--DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLN 524 + YG RR+ E + + +Q +V G GLN Sbjct: 516 RLQEKYGKGVKRRTTYDEIAQI----------DASAVVSANQRLYVNREDGFI----GLN 561 Query: 525 YKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDH 584 ++ + + V+ + G ++ + G + P ++ Sbjct: 562 WRQHEFVT---ECSILDSVLTIMRDG---SLKVTKVADKVFMGRKIIHIGLWPKDGDMNF 615 Query: 585 MLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASD--- 641 M D + + + L +R + E++ ++ + Sbjct: 616 YTMVYQDGE----TGKAFAKKFQIGGL---SRDKLYSLVKSEDSKIIFLHISPSEQAMPK 668 Query: 642 --MLLAITQAGRMLM---FPVSDLPQLSKGKGNKIINIPSAEAARGEDGL 686 + ++G + F ++ LP ++ I S + + L Sbjct: 669 TLHVSVDGRSGARVRELDFDLTALPVSTRTSKGLTITKWSVKEVKAAKPL 718 >UniRef50_C6XSV0 DNA topoisomerase (ATP-hydrolyzing) n=61 Tax=Bacteria RepID=C6XSV0_PEDHD Length = 977 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 151/750 (20%), Positives = 291/750 (38%), Gaps = 90/750 (12%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 + ++ EN +L+Y+ YVI+DRA+P I DGLKPVQRRI++++ E+ +F K+A + Sbjct: 18 IPINGLYENWFLDYASYVILDRAVPHINDGLKPVQRRIMHSLKEMD---DGRFNKAANVI 74 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 G+ + KYHPHGD++ +AMV + Q L+D QGNWG P + AA RY E+RLSK Sbjct: 75 GNTM-KYHPHGDASIGDAMVQIGQKD----LLIDCQGNWGDPITGDNAAAPRYIEARLSK 129 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 ++ ++ T W ++DG EP LP + P +L G GIAVG+AT + PHN E Sbjct: 130 FANEVV--FNGDTTIWQLSYDGRNNEPVTLPVKFPLLLAQGAEGIAVGLATKVMPHNFIE 187 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR--GSVRMRAVW 245 + A+I + + + PD+ T S Y G G +R+RA Sbjct: 188 LLDASIEALQGHRPNIL--------PDFFTGGMADFS------AYNEGMRGGRIRVRAKI 233 Query: 246 -KKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSN 304 +K+ +VI+ +P+ + V++ I + K+ + D+ +++ + Sbjct: 234 TEKDKKTLVITEIPYSTTTGSVIDSILSANDKGKIKIKK----IEDNTAAHVEIVIQLAP 289 Query: 305 RVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNY 364 + D ++ L+A T E S N I D +P ++ +IL E + + +++ L Sbjct: 290 GISPDVTIDALYAFTSCEVSISPN-TCIIKDEKPQFLSVNDILIENSMHTKALLKKELEI 348 Query: 365 RLEKVLKRLHILEGLLVAF-------------LNIDEVIEIIRNEDEPKPALMSRFGLTE 411 +L ++ +++ L + +N + V+E++ EP + R + Sbjct: 349 KLHELQEKIFFSSLLKIFIQEGMYKNAEYENSVNFEMVVEVLNRLFEPFKPGLYR-EILP 407 Query: 412 TQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQA 471 + +++ + + + + K + L E ++ L R + Q Sbjct: 408 EDFKKLIDKPMSSITRFDVKKADEQMKALSDEIKVVKNHL---RHLTEYAIAWFQKLKDK 464 Query: 472 YGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSF 531 YG R + R + + L + V+ + G + + Sbjct: 465 YGKGRERKTEIRLFDRVEASKVALAN------------VKLYMNREDGFIGTGLRKDEFV 512 Query: 532 KAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDD 591 ++ G+ + G+G + ++ D Sbjct: 513 AD---CSDIDELIVFREDGKCIITKVAD-KTFVGKGILHAQVFK-KGDERTIYNMIYKDG 567 Query: 592 QKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI----T 647 + T + + K + V+ + ++ + Sbjct: 568 ASGVSYIKRFAVVGVTRDKEYDLTKGSK-------GSKVLYFTANPNGEAEIVTVQLKPH 620 Query: 648 QAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKI 707 + L F + KG+G++ + + + L + Sbjct: 621 SKLKKLQFDLDFAEIAIKGRGSQGNIVSKYPVKKILLKSKGVSTLSG------------L 668 Query: 708 KLRPEELQKVTGERGRRGTLMRGLQRIDRV 737 K+ ++L + GR G + D++ Sbjct: 669 KIWYDDLLRRLNVDGR-GKYLGEFDGEDKI 697 >UniRef50_B9XEN7 DNA topoisomerase (ATP-hydrolyzing) n=1 Tax=bacterium Ellin514 RepID=B9XEN7_9BACT Length = 701 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 151/610 (24%), Positives = 271/610 (44%), Gaps = 66/610 (10%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 LH+ + ++L Y+ YVI DRA+P + DGLKPVQRRI++++ E +F K A Sbjct: 57 ETPLHKRMDFSFLEYASYVIRDRAIPNLADGLKPVQRRILWSLHE---KDDGRFIKVATI 113 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 G +YHPHG++A +A+V++ + + L++GQGN+G AA RY E RL+ Sbjct: 114 SGHC-AQYHPHGEAAIGDALVVI----TNKRYLIEGQGNFGNIYTGDPAAAPRYIECRLT 168 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 + + L ++VP++DG +EP LP++LP +L+ GT GIAVGM+ I PHN Sbjct: 169 ELARNEL--FNDELTEFVPSYDGRNKEPVTLPSKLPTLLMLGTEGIAVGMSCKILPHNFP 226 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 E+ +A IA++ + + PD+PT + Y +G+GS+++RA K Sbjct: 227 ELLEAQIAILKKQPFKVL--------PDFPTGGLMDARE------YADGKGSIKVRAKIK 272 Query: 247 -KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNR 305 K++ VVI +P + ++ I R K+ + + D + E + + + Sbjct: 273 AKDESTVVIKEIPPMTTTDSLIGSIEDASRKGKIK-IKSINDFTSEEA---EIEIKAPSG 328 Query: 306 VDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYR 365 V DQ+++ L+A TD E S + +I + RP + E+L E DT++R L + Sbjct: 329 VSADQLIDALYAFTDCEMSISSRIIVI-RNNRPVEMTVSEVLRENTAQLVDTLKRELELK 387 Query: 366 LEKVLKRLHILEGLLVAFLN-IDEVIEIIRNEDEPKPALMSRF---------GLTETQAE 415 +K+ + LH + + N I + IE + + A+ F L +T E Sbjct: 388 EKKLQEELHFKTLVRIFIENRIYKKIEQCKTNEAVYEAVYDGFKPFRKEMIRDLVDTDVE 447 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYG-- 473 +L +++R ++ + K R E +++ + + L + + L+A + YG Sbjct: 448 MLLGVRIRRISLFDINKHREEIDKIKADLSETAKHLKN---LTKYAIGRLEALLEKYGPI 504 Query: 474 DDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKA 533 R + S +D + ++ V ++ + R + G ++ Sbjct: 505 YPRLTK---------SSRYDEVEAKDVAFKAFKVAYDRESGYVGHKVSGEEFR------- 548 Query: 534 AVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQK 593 V ++ + G L G P +P + + + + Sbjct: 549 -VDCTKFDKLLLIFRDGHY---KVTELQEKLFVG-PDVVYCGIPDRDRIFTLAYTNREAT 603 Query: 594 LLMASDAGYG 603 L G Sbjct: 604 YLKRFTFGGI 613 >UniRef50_A6DRS7 DNA topoisomerase IV subunit A n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DRS7_9BACT Length = 808 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 145/675 (21%), Positives = 267/675 (39%), Gaps = 93/675 (13%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 L+ +++Y+ YVI DRA+P + DGLKPVQRRI++ + + KF K A VG Sbjct: 33 LNRMMTGNFIDYASYVIKDRAIPDVDDGLKPVQRRILHTLFKAD---DGKFHKVANIVGA 89 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 + YHPHGDS+ Y A+V +A + ++ QGN+G + +A RY E RLS + Sbjct: 90 CM-AYHPHGDSSIYGALVTVA----NKEYFIEKQGNFGNILTGDNASAARYIECRLSPLA 144 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 L T ++V ++DG +EP LPA++P +L+ GT GIAVGMAT I PHN E+ Sbjct: 145 RETL--FNTETTEFVDSYDGRNKEPVCLPAKVPALLMMGTEGIAVGMATRILPHNFNELL 202 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK-E 248 +A I ++ + + PD+ + S+ Y+ GRG V +RA Sbjct: 203 KAQIKILRGQRFEI--------YPDFLCGGIMDISQ------YDFGRGKVTVRAKIDILN 248 Query: 249 DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308 + +VI + + ++ I +N K+ + ++D + + + V Sbjct: 249 NKTLVIKQVAPGTTTESLMSSIEEAAKNGKIK-IASIQDYTAEH---VEIEINLPRGVQA 304 Query: 309 DQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEK 368 D +N L+A T E S N+ +I GRP ++ E+L + +R L K Sbjct: 305 DWALNALYAFTQCEVSLSPNITVIQR-GRPKEIHVGEVLHHNTQTLVNILRWELLNEQNK 363 Query: 369 VLKRLHILEGLLVAFLN-IDEVIEIIRNEDEPKPAL---------MSRFGLTETQAEAIL 418 + ++ H + I + IE ++ E A+ R +++ E +L Sbjct: 364 LNEKYHDRTLERIFIEERIYKKIEECTSQSEVFEAVRSGLKPFLDQLRRDVSDEDIERLL 423 Query: 419 ELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD--DR 476 + +R ++ + K E E+ K L+ + + + + ++ YG R Sbjct: 424 RIPIRRISLFDINKNNKELEEILK---ALKEVAYNLEHLKDYTINFIKNLISKYGKQYPR 480 Query: 477 RSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVK 536 + ++ E+ A + + + ++G+ + N +K Sbjct: 481 LTEIKSIEKVDA---------KEIAVANVKLGYDKVGGYIGTQINNGN---------HIK 522 Query: 537 GKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLM 596 ++ + G+ + G T + + ++ +D + + Sbjct: 523 CTEFDRIIILTKDGK---FKVTNISDKLFVGR-FTEIFVVDKEQ--IYSVIYTDKKSGIS 576 Query: 597 ASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFP 656 + ++ + + L T G +L Sbjct: 577 YHKRCMIKKFILDKEY---------------------LLFPKGNKLELIDTNYGIVLDCH 615 Query: 657 VSDLPQLSKGKGNKI 671 + D S+ KG Sbjct: 616 LED---TSRSKGVTA 627 >UniRef50_C1E5N4 DNA topoisomerase 2 n=1 Tax=Micromonas sp. RCC299 RepID=C1E5N4_9CHLO Length = 1459 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 89/517 (17%), Positives = 184/517 (35%), Gaps = 71/517 (13%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 + + +F + +S +M R++P + DG KP QR+++++ + L + K + + Sbjct: 702 DDVRYDDFINKELILFSRADLM-RSIPSVVDGFKPSQRKVLFSCFKRKLKSDIKVAQLSG 760 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTE 122 V + YH HG+++ +V +AQ F S L+ G +G K A+ RY Sbjct: 761 YVSE-HSAYH-HGEASLASTIVGLAQDFVGSNNVNLLVPSGQFGTRLQGGKDHASPRYIF 818 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 +RL+ ++ E D++ DG + EP+ LP +L+NG GI G +T IP Sbjct: 819 TRLAPICRVIFPECDDALLDYLDE-DGQVIEPEHYLPILPLVLVNGADGIGTGWSTSIPN 877 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 N R++ ++D T + I + G + Sbjct: 878 FNPRDIVANIRRILDDECTERMH-------------PWYRNFKGTIEEEIVKGEIRYNIT 924 Query: 243 AVWKK-EDGAVVISALPHQVSGARVLEQIAAQMRNKKL---PMVDDLRDESDHENPTRLV 298 ++ ++ +VI+ LP + + + + K+ P + D ++ +V Sbjct: 925 GKYEIVDETTLVITELPLRSWTTDYKDFLENMLSPKEKNAQPFITDYKEHHTDTTVHFIV 984 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRP---AVKNLLEILSEWLVFRR 355 + N + + + L + NM D + + I+ ++ R Sbjct: 985 TMTPENMAKAQK--DGIEKKFKLCAKVSTS-NMHAFDEKGGITKYSSPEAIMEAFVPLRL 1041 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRF-------- 407 D RR + + L + + L + + I + K L+ Sbjct: 1042 DAYARRRAMLIRQAEFELKRMSNKVRFILAVVDGEMTIGRKK--KSVLIEELEAAGYDKM 1099 Query: 408 --------------------GLTET---------QAEAILELKLRHLAKLEEMKIRGEQS 438 ++E + +L + L +L + + ++ EQ Sbjct: 1100 PKTAKAAAAADAEPAESGLSDISEEGAPAPADGASYDYLLSMPLWNLTQEKVDELVEEQR 1159 Query: 439 ELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 E ++L G + + +L A + + Sbjct: 1160 VKTAEVEELHGTTDKQLWIRDL--DAFDAAMDVFDAE 1194 >UniRef50_Q8I0X3 DNA gyrase subunit A;evidence=inferred from direct assay n=9 Tax=Plasmodium RepID=Q8I0X3_PLAF7 Length = 1222 Score = 397 bits (1021), Expect = e-109, Method: Composition-based stats. Identities = 156/670 (23%), Positives = 307/670 (45%), Gaps = 61/670 (9%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAK-FKKSAR 65 + + E ++L+Y+ ++I++R L DGLK VQRRI+++M E+ K +KK AR Sbjct: 174 DVEICEILSKSFLSYANFLILNRCLCDYRDGLKTVQRRIIWSMYEINKGIDKKGYKKCAR 233 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 VG+V+GKYHPHGD + Y+A+V +AQ L+ G GN+G+ + + AAMRYTE+++ Sbjct: 234 IVGEVIGKYHPHGDKSVYDALVRLAQKHHNNNLLIKGYGNFGSVE--YNAAAMRYTEAKI 291 Query: 126 SKYSEL-LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 S + LL E+ +++ NFDG +EPK+L +++P +L+NG +GIAV + + IP HN Sbjct: 292 SSFCYDILLDEINDENVEYIKNFDGNEREPKVLCSKIPLLLINGCSGIAVSILSSIPCHN 351 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 L +VA I + D+L I++GPD+ T II+ ++ IY +G+G+ +R+ Sbjct: 352 LIDVANCCINFLINENIRDDELFHIIKGPDFSTGGIIISKYDILKNIYNSGKGNFEIRSN 411 Query: 245 WKKE---------------------------DGAVVISALPHQVSGARVLEQIAAQMRNK 277 E ++I LP V ++E I + +K Sbjct: 412 VFFEYIKNDKKVITKHINDLSSIENSDIDKLTKKIIIKNLPPNVKPNELIENIINLLNDK 471 Query: 278 KLP---MVDDLRDESDHENPTRLVIVPRSNRVD-MDQVMNHLFATTDLEKSYRINLNMIG 333 K ++ +RDES+ E+ ++ + + ++++ + +++LF T+++ SY N IG Sbjct: 472 KNEHDNILLRIRDESEKEDMRIVLELKKHSQIEQIHNFLSYLFKYTNMQISYHCNFVCIG 531 Query: 334 LDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEII 393 + +L + W R ++ + + + K+L+I++ L+ I ++I Sbjct: 532 YENTYTQFSLKSFIKLWCNNRIKFIKTNYEIKNKNLQKQLNIIDLYLIIQNKILDIITFF 591 Query: 394 RNEDEPKPA---LMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 450 + + L + F L Q + IL +KL+ L ++ + +++++ + I Sbjct: 592 QKNQNIEQIQLYLKNNFKLNPEQIKYILSIKLQKLINIKNIDFISQRNKIMHQIKLNDEI 651 Query: 451 LASERKMNNLLKKELQADAQAYGD-------------DRRSPLQEREEAKAMSEHDMLPS 497 + + + + NL+ +EL YG + E S++ + Sbjct: 652 INNVQNIKNLIIQELIYIKNKYGIHNLNKQCIIPSTPKYKYSYINSEYHPNFSKNKQIID 711 Query: 498 EPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDP 557 T+ + S HD+ K K V+ ++ + I Sbjct: 712 TYNTVSTNDNNINHSNYTHDLPNTDNVTKD----KNVVETNVHKNIHISSDISN--NIKN 765 Query: 558 ITLPSARGQGEPLTGKLTLPPG--ATVDHML--MESDDQKLLMASDAGYGFVCTFNDLVA 613 S+ + + + ++D+ + + ++D+ L++ + GY N+ + Sbjct: 766 SDKNSSLTKNQDSDNMMPYRNTYIDSLDNNMKDIYNNDEVLILITYGGYIKKIKINEKLK 825 Query: 614 RNRAGKALIT 623 + ++ Sbjct: 826 NHSNNIIKLS 835 Score = 102 bits (255), Expect = 5e-20, Method: Composition-based stats. Identities = 31/213 (14%), Positives = 77/213 (36%), Gaps = 10/213 (4%) Query: 531 FKAAVKGKSNQPVVFVDSTGRSYAIDPITL--PSARGQGEPLTGKLTLPPGATVDHMLME 588 K ++ ++ ++ D+ +++ ++ L S +G P+ + + + Sbjct: 916 IKKSILVRNRDKILLTDNYNKAFLLNVYDLHLSSYDSKGTPINQIIHSSKN--ITGITKF 973 Query: 589 SDDQKLLMA-SDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAIT 647 +++K L+ S+ G V + + R + G L +N + +D + T Sbjct: 974 QENKKYLIVCSENGKMKVINNDVFLKRKKKGIKLFKNKKN----IYFSYCNFNDNCIVGT 1029 Query: 648 QAGRMLMFPVSDLPQLSKGK-GNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIHVGKRK 706 + G ++ FP+S K GNK I++ + + Sbjct: 1030 KNGYIIQFPLSSFKISKKNSLGNKCISLAKNDKVVDLLSYENNEKNLKNYKIIFVTKNGF 1089 Query: 707 IKLRPEELQKVTGERGRRGTLMRGLQRIDRVEI 739 K+ K+ ++G+ +M+ + R + Sbjct: 1090 GKMINLNELKIQKKKGKGHRIMKFKKSKTRKDN 1122 >UniRef50_Q9Y8G8 DNA topoisomerase 2 n=79 Tax=cellular organisms RepID=TOP2_PENCH Length = 1587 Score = 397 bits (1020), Expect = e-109, Method: Composition-based stats. Identities = 89/510 (17%), Positives = 185/510 (36%), Gaps = 66/510 (12%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + +++ +F + +SM + R++P + DGLKP QR+++Y L K Sbjct: 714 LDHSVDKITYTDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVLYTCFRRNLKKDMKV 772 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAA 117 + A V + HG+ + + +V +AQ F S ++ GN+G+ A+ Sbjct: 773 VELAGHVSGTTA--YQHGEGSLQQTIVGLAQTFVGSNNVNCLEPSGNFGSRLQGGADCAS 830 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY +RL ++ + + + DG E ++ +P IL+NG GI G + Sbjct: 831 ARYIYTRLWPFARRVFHNHDDPLLTYNED-DGAKIEQEVYVPVVPMILINGADGIGTGWS 889 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 + P +N ++ + ++D Q P + R ++ G+ Sbjct: 890 SSTPNYNPEDIVENLKRMMDGEPLKPMQ-------PWF---------RGFTGEVTAVGQD 933 Query: 238 SVRMRAVW-KKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLP-MVDDLRDESDHENPT 295 + + + D V I+ LP + +++ ++ +K P + D +D + H Sbjct: 934 RFKFSGIIKETGDKEVEITELPIRTWTQDFKDKLEDIIKAEKTPSFIKDYKDYNTHTKVH 993 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRI-NLNMIGLDGRPAVKNLLEILSEWLVFR 354 ++ + + + L L K+ NL + ++ +I+ E+ R Sbjct: 994 FVIQMDEKHMKTA--IAEGLEEKFKLSKTMTTTNLVAFDPERITKYASVEDIMKEFYAVR 1051 Query: 355 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP------KPALMSRFG 408 RR Y+L ++ K L L I + +I + + K F Sbjct: 1052 LKYYERRKQYQLSEMQKELDKLSNQARFVQMIIDGKLVISKKKKAVLVAELKEKDFKPFP 1111 Query: 409 LTET---------------------------QAEAILELKLRHLAKLEEMKIRGEQSELE 441 + + +L + + L + K+R + + E Sbjct: 1112 KVKEAVKAGETEPVVEEEEDSESGDTEVLSNSYDYLLGMPIWSLTQERVEKLRRQIGDKE 1171 Query: 442 KERDQLQGILASERKMNNLLKKELQADAQA 471 E D L + ++ K++L+ Sbjct: 1172 LEIDTLIKLSK-----EDIWKRDLEDFINE 1196 >UniRef50_D0NA12 DNA topoisomerase 2 n=1 Tax=Phytophthora infestans T30-4 RepID=D0NA12_PHYIN Length = 1505 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 102/507 (20%), Positives = 197/507 (38%), Gaps = 61/507 (12%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + + + EF + +SM + R++P + DG KP QR++++ + L A K Sbjct: 734 VDYDVDEMGYTEFVNKELILFSMADNI-RSIPSVMDGFKPSQRKVLFCCFKRNLRAELKV 792 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAA 117 + A V + YH HG+++ +V MAQ F S L+ G +G K A+ Sbjct: 793 AQLAGYVSE-HSAYH-HGEASLQGCIVNMAQDFVGSNNIHLLSPIGQFGTRLMGGKDAAS 850 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY + L + + L+ L ++ + DG EP+ +P +L+NG+ GI G + Sbjct: 851 ARYIFTNLEQLTRLIYHPLDNDCLKYL-SEDGQSIEPEWYIPIIPMVLVNGSDGIGTGWS 909 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 + +P +N ++ + +I+ + P Y I +A R G Sbjct: 910 SSVPNYNPLDIIKGLRQMINGEEIAPLT-------PWYRGFTGHIVEKANSRG---TDTG 959 Query: 238 SVRMRAVWKK-EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 + ++ +++ +D +V+S LP + + + + + D ++ Sbjct: 960 NYIVQGLYEVTDDSTLVVSELPVKSWTQTYKQFLEGLLDAGT---IKDFKENHTDVKVLF 1016 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRP---AVKNLLEILSEWLVF 353 + + D+ + + LE S + NM D +N EI++E+ Sbjct: 1017 TITMEPKALSDVTKAPGGIVKKFKLESSLSTS-NMHLFDAAGHIKKYENPKEIMAEFYGI 1075 Query: 354 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEII--RNEDEPKPALMSRF---- 407 R + RR L+K+ ++ +L L + E ++ R + E LM+ Sbjct: 1076 RLEYYGRRKKAMLQKLQDQIKLLSNKARFVLAVVEGKLVVNNRKKQELLEELMAEGYDQI 1135 Query: 408 ------------------------GLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKE 443 ++ + +L +K+ L K K+R E E E E Sbjct: 1136 VSKTKKKPDNEDSNESEDEEPNVADVSRG-YDYLLSMKIWSLTKERVDKLRAELQEREHE 1194 Query: 444 RDQLQGILASERKMNNLLKKELQADAQ 470 L+G R + +L +L A + Sbjct: 1195 YSVLEG-----RTVQDLWLTDLDALEK 1216 >UniRef50_A8PTE9 DNA topoisomerase 2 n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PTE9_MALGO Length = 1376 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 89/510 (17%), Positives = 184/510 (36%), Gaps = 67/510 (13%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + + + +F + +SM + R++P + DGLKP QR+++++ + L K Sbjct: 644 LDHRIRNIPISDFINKELILFSMADNI-RSIPSVVDGLKPGQRKVIFSCFKRKLKTEIKV 702 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAA 117 + V + YH HGD A +V +AQ F S L+ G +G+ K A+ Sbjct: 703 HQLQGYVSE-HSAYH-HGDQALTMTIVGLAQDFCGSNNVNLLMPNGQFGSRSMGGKDAAS 760 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY + + + + L+ + +++ + DG EP+ +P +LLNG GI G + Sbjct: 761 ARYIFTAVPRITRLMFHADDEPLLNYLED-DGQSIEPEWYAPVVPQVLLNGAEGIGTGWS 819 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T +P +N REV + + P I G Sbjct: 820 TFVPNYNPREVVDNLRRRMAGEEYV-------------PMNPWYRGFVGGIEPA---GPE 863 Query: 238 SVRMRAVWK-KEDGAVVISALPHQVSGARVLEQIAAQM--RNKKLPMVDDLRDESDHENP 294 R+ + + ++ I+ LP +V E + ++ +K ++ + ++ + Sbjct: 864 RFRVTGIARQLDERTWEITELPVRVWTMTYKEWLEERVVGSDKTPAVLREYKEYHTDTSV 923 Query: 295 TRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEWL 351 +V + ++++V L + NM+ + +K EIL ++ Sbjct: 924 HFVVELNPRGMEEIERVGPD--TFFKLSTMLSTS-NMVLFNPEGKIKKYATPQEILEDFY 980 Query: 352 VFRRDTVRRRLNYRLEKVLKRLHILEGLLVAF-LNIDEVIEIIRNEDEPKPALMSRFGL- 409 R +RR + ++++ L + I + + + + + Sbjct: 981 FVRLGFYQRRKEHLVDQLKLVYDRLSNQARFVSMIIARELSVSNKKKAAIVEELRQLKFQ 1040 Query: 410 ----------------------------TETQAEAILELKLRHLAKLEEMKIRGEQSELE 441 + T + +L + + L + ++ E+ E Sbjct: 1041 AFPKVEAKAKSVTEEAVEDQEEPDEPANSNTDYDYLLSMAIYSLTQERVERLLKERDHTE 1100 Query: 442 KERDQLQGILASERKMNNLLKKELQADAQA 471 E L G R NL ++L A + Sbjct: 1101 TELKILLG-----RSPQNLWDEDLTAFLEE 1125 >UniRef50_Q02880 DNA topoisomerase 2-beta n=175 Tax=Eukaryota RepID=TOP2B_HUMAN Length = 1626 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 91/515 (17%), Positives = 183/515 (35%), Gaps = 74/515 (14%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 + L ++F + +S +R++P + DG KP QR++++ + K + A Sbjct: 712 KHLTYNDFINKELILFSNSDN-ERSIPSLVDGFKPGQRKVLFTCFKRNDKREVKVAQLAG 770 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTE 122 +V + + YH HG+ A +V +AQ F S L+ G +G K A+ RY Sbjct: 771 SVAE-MSAYH-HGEQALMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIF 828 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 + LS + LL + ++ + D EP+ +P +L+NG GI G A +P Sbjct: 829 TMLSTLARLLFPAVDDNLLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWACKLPN 887 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 ++ RE+ ++D +P + I+++ G+ + Sbjct: 888 YDAREIVNNVRRMLDGLDP-------------HPMLPNYKNFKGTIQEL---GQNQYAVS 931 Query: 243 A-VWKKEDGAVVISALPHQVSGARVLEQIAAQM---RNKKLPMVDDLRDESDHENPTRLV 298 ++ + V I+ LP + EQ+ M +K ++ D ++ +V Sbjct: 932 GEIFVVDRNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTTVKFVV 991 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRP---AVKNLLEILSEWLVFRR 355 + + L L+ + N M+ D + + +IL E+ R Sbjct: 992 KMTEEKLAQAEA--AGLHKVFKLQTTLTCNS-MVLFDHMGCLKKYETVQDILKEFFDLRL 1048 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAF-LNIDEVIEI-IRNEDEPKPALMSRFGLTET- 412 R + + + L I I I R++ + L+ R ++ Sbjct: 1049 SYYGLRKEWLVGMLGAESTKLNNQARFILEKIQGKITIENRSKKDLIQMLVQRGYESDPV 1108 Query: 413 ---------------------------------QAEAILELKLRHLAKLEEMKIRGEQSE 439 IL + L L K + ++ ++ Sbjct: 1109 KAWKEAQEKAAEEDETQNQHDDSSSDSGTPSGPDFNYILNMSLWSLTKEKVEELIKQRDA 1168 Query: 440 LEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 +E + L+ + ++L K++L A + Sbjct: 1169 KGREVNDLK-----RKSPSDLWKEDLAAFVEELDK 1198 >UniRef50_Q8SS63 DNA topoisomerase 2 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SS63_ENCCU Length = 1144 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 97/480 (20%), Positives = 185/480 (38%), Gaps = 50/480 (10%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + ++++ +F + +SM + R++P + DGLKP QR+++++ + L + K Sbjct: 636 LDQSQTQISISDFVNKELILFSMADNI-RSIPSLVDGLKPGQRKVIFSCFKRNLRSEIKV 694 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAA 117 + V + YH HG+ + +V +AQ F S L+ G +G+ K A+ Sbjct: 695 AQLVGYVSE-QSAYH-HGEQSLCSTIVNLAQDFVGSNNINLLLPIGQFGSRLQGGKDAAS 752 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY + LS + ++ +E +++ N D EP+ +P +L+NG GI G + Sbjct: 753 PRYIFTSLSPLTRMIFNENDDAILNYL-NDDNFSIEPEFYVPIIPMVLVNGAEGIGTGWS 811 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T IP N +V + +I R I KI G G Sbjct: 812 TSIPNFNPVDVVENIRRMIRGEDPVE-------------MVPYYRNFRGTIEKI---GEG 855 Query: 238 SVRMRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 ++ +++ D + I+ LP E + + ++ D ++ + + Sbjct: 856 KFQVSGIYE-GDMDLEITELPVGTWTLNYKEFLESLVQAGVA---RDFKEYHTEKTVSFT 911 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEWLVFR 354 V + + + L + +N NM+ D +K EIL E+ R Sbjct: 912 VKLSKP------------VSNLKLNSTITVN-NMVCFDENLRIKKYATPQEILKEFYGVR 958 Query: 355 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEII--RNEDEPKPALMSRFGLTET 412 R L+ + + L LE + + +I R + E L SR Sbjct: 959 LRYYLIRKENMLKVMREELEKLENKVRFIKEVSMGELVISRRRKGEVIFDLESRGYARAD 1018 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 E +L + + L ++ E ++ E +QL G + L ++L+ + Y Sbjct: 1019 DYEYLLSMSILSLTVERIERLSNEHAKRLSEYNQLMG-----KTPKELWLEDLEVFEKEY 1073 >UniRef50_P41001 DNA topoisomerase 2 n=10 Tax=Eukaryota RepID=TOP2_PLAFK Length = 1398 Score = 394 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 100/529 (18%), Positives = 202/529 (38%), Gaps = 67/529 (12%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + L+ ++F + YS Y +R++P I DG KP QR+++Y + L K + Sbjct: 713 KEKDLSYYDFVNKELIYYSRYD-TERSIPNIMDGWKPGQRKVLYGCFKRNLRNECKVAQL 771 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRY 120 + + YH HG+S+ + ++ MAQ F S ++ G +G+ + K +A RY Sbjct: 772 VGYIAE-HSAYHHHGESSLQQTIINMAQTFVGSNNINFLEPCGQFGSRKEGGKDASAARY 830 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 ++L+ + + +E ++ N +G EP+ +P IL+NG GI G ++ I Sbjct: 831 IFTKLASSTRSIFNEYDDPILKYL-NEEGQKIEPQYYIPVIPTILVNGCEGIGTGYSSFI 889 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 P +N +++ I++ P P + I + G ++ Sbjct: 890 PNYNYKDIIDNIKRYINKE-------------PLIPMVPWYKDFKGRIESNGKTGYETIG 936 Query: 241 MRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 + + K ++ + I+ LP + E + + ++K ++ D D S HE+ + + Sbjct: 937 I--INKIDNDTLEITELPIKKWTQDYKEFLEELLTDEKHQLILDYIDNSSHEDICFTIKM 994 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRI-NLNMIGLDGRPAVKNLL-EILSEWLVFRRDTV 358 + ++ L L+ + N+ + + + + +IL E+ R Sbjct: 995 DPAKLQKAEE--EGLEKVFKLKSTLTTTNMTLFDPNLKLQRYSTELDILKEFCYQRLKAY 1052 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIR------------------NEDEPK 400 R +Y + K+ K I+ L I I+ +D K Sbjct: 1053 ENRKSYLISKLEKEKRIISNKTKFILAIVNNELIVNKKKKKVLVEELYRKGYDPYKDINK 1112 Query: 401 PALMSRF-------------------GLTETQAEAILELKLRHLAKLEEMKIRGEQSELE 441 F G+T + +L + + L + + + E E Sbjct: 1113 IKKEEIFEQELLDAADNPEDNEEIIAGITVKDYDYLLSMPIFSLTLEKVEDLLTQLKEKE 1172 Query: 442 KERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMS 490 +E + L+ I + + K+++ +A R L REE+ Sbjct: 1173 RELEILRNIT-----VETMWLKDIEKVEEAIEFQRNVELSNREESNKFK 1216 >UniRef50_P11388 DNA topoisomerase 2-alpha n=47 Tax=Eukaryota RepID=TOP2A_HUMAN Length = 1531 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 103/517 (19%), Positives = 185/517 (35%), Gaps = 74/517 (14%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 L ++F + +S +R++P + DGLKP QR++++ + K + A Sbjct: 691 TYLTYNDFINKELILFSNSDN-ERSIPSMVDGLKPGQRKVLFTCFKRNDKREVKVAQLAG 749 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTE 122 +V + + YH HG+ + ++ +AQ F S L+ G +G K A+ RY Sbjct: 750 SVAE-MSSYH-HGEMSLMMTIINLAQNFVGSNNLNLLQPIGQFGTRLHGGKDSASPRYIF 807 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 + LS + LL T ++ + D EP+ +P +L+NG GI G + IP Sbjct: 808 TMLSSLARLLFPPKDDHTLKFLYD-DNQRVEPEWYIPIIPMVLINGAEGIGTGWSCKIPN 866 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 ++RE+ L+D + P + I ++ N + Sbjct: 867 FDVREIVNNIRRLMDGEEP-------------LPMLPSYKNFKGTIEELAPN---QYVIS 910 Query: 243 AVWKK-EDGAVVISALPHQVSGARVLEQIAAQM---RNKKLPMVDDLRDESDHENPTRLV 298 + IS LP + EQ+ M K P++ D R+ +V Sbjct: 911 GEVAILNSTTIEISELPVRTWTQTYKEQVLEPMLNGTEKTPPLITDYREYHTDTTVKFVV 970 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRP---AVKNLLEILSEWLVFRR 355 + + ++V L L+ S N M+ D +L+IL ++ R Sbjct: 971 KMTEEKLAEAERV--GLHKVFKLQTSLTCNS-MVLFDHVGCLKKYDTVLDILRDFFELRL 1027 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAF-LNIDEVIEIIRN-EDEPKPALMSRFGLT--- 410 R + L + L ID I I + E L+ R + Sbjct: 1028 KYYGLRKEWLLGMLGAESAKLNNQARFILEKIDGKIIIENKPKKELIKVLIQRGYDSDPV 1087 Query: 411 ----ETQ------------------------------AEAILELKLRHLAKLEEMKIRGE 436 E Q +L++ L +L K ++ ++ Sbjct: 1088 KAWKEAQQKVPDEEENEESDNEKETEKSDSVTDSGPTFNYLLDMPLWYLTKEKKDELCRL 1147 Query: 437 QSELEKERDQLQGILASERKMNNL--LKKELQADAQA 471 ++E E+E D L+ S+ +L +EL+A Sbjct: 1148 RNEKEQELDTLKRKSPSDLWKEDLATFIEELEAVEAK 1184 >UniRef50_Q73KU9 Topoisomerase IV, A subunit, putative n=2 Tax=Treponema RepID=Q73KU9_TREDE Length = 703 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 143/694 (20%), Positives = 267/694 (38%), Gaps = 105/694 (15%) Query: 10 LHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGD 69 + +L Y+ YVI DRA+P + DGLKPVQRRI++++ E+ KF K A +G Sbjct: 4 IESLFNKNFLEYASYVIRDRAIPDLEDGLKPVQRRILHSLFEMD---DGKFHKVANVIGH 60 Query: 70 VLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKYS 129 + KYHPHGD++ A+V++A + +D QGN+G +A RY E R+++++ Sbjct: 61 CM-KYHPHGDASIGNALVVLA----SKELFIDTQGNFGNIFTGDEASAPRYIECRVNEFA 115 Query: 130 ELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVA 189 + + D+ ++DG +EP A+LP IL G GIAVGM+T I PHN+ E+ Sbjct: 116 KTIF--YNPHITDYTVSYDGRNKEPLAFRAKLPVILAIGAEGIAVGMSTKILPHNILEII 173 Query: 190 QAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK-E 248 +A A + L PD+PT I S YE+G G V +RA + Sbjct: 174 EAEKAFLSGKSFAL--------FPDFPTGGLIDVSE------YEDGLGKVLVRAKLDTSD 219 Query: 249 DGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDM 308 + +VI LP + ++ I A + K+ + ++ D + + + V Sbjct: 220 EKRIVIRELPFGSTTESMINSIEAASKAGKVK-ISEISDYTGEN---VEIELKLPRGVYS 275 Query: 309 DQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEK 368 V++ L+A T+ E+S NL +I D P + +I+ ++ L Y Sbjct: 276 ADVVDALYAFTECEQSIPCNLLVI-KDNLPVQITVTDIIKYHAKQLMQILKDELEYERAM 334 Query: 369 VLKRLHILEGLLVAFLN-IDEVIEIIRNEDEPKPALMSRF---------GLTETQAEAIL 418 + +RLH+ + I + IE ++ + A++ F +TE + +L Sbjct: 335 LTERLHLRTLERIFIEERIYKKIETMKTAEGVINAVIKGFVPFKKELIRDVTEDDVDKLL 394 Query: 419 ELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD--- 475 ++ +R ++ + K R E E+ ++ +L + + L A + Sbjct: 395 KIPIRRISLYDINKNREEVREINNRLKEIAKLLKN---LKGYAISVLDGIAAKLPAEEFK 451 Query: 476 RRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAV 535 R++ + + +++ +R + + K + Sbjct: 452 RKTEITGFTKVDVKE------------AVTRDTALRYDEETGYLGTSVTT-----GKDIL 494 Query: 536 KGKSNQPVVFVDSTGRSYAIDPITLPSARG--QGEPLTGKLTLPPGATVDHMLMESDDQK 593 + + + +G Y + +P G G + V ++ D + Sbjct: 495 RVSPYDRIFVLRKSG-VYT--VMDVPDRVFVDTGMWYCGFAEKEELSKVLFTVIYRDSK- 550 Query: 594 LLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRML 653 + Y + + D +++L T+ Sbjct: 551 ----TKYAYIKRARVEGYILNR----------------DYLFAPDNTEVLFVSTKLKFSF 590 Query: 654 M---------------FPVSDLPQLS-KGKGNKI 671 F + K +G ++ Sbjct: 591 KLNYAPKPRVKKIEEEFKADSFAEKGLKAQGVRL 624 >UniRef50_Q4RIW2 DNA topoisomerase 2 (Fragment) n=1 Tax=Tetraodon nigroviridis RepID=Q4RIW2_TETNG Length = 1568 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 95/537 (17%), Positives = 188/537 (35%), Gaps = 93/537 (17%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 A L+ ++F + +S +R++P + DGLKP QR++++ + K + Sbjct: 824 QARHLSYNDFINKELILFSNSDN-ERSIPSLVDGLKPGQRKVLFTCLKRNDKREVKVAQL 882 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRY 120 A +V + + YH HG+ A +V +AQ F S ++ G +G + K A+ RY Sbjct: 883 AGSVAE-MSAYH-HGEQALMMTIVNLAQNFVGSNNLNILQPLGQFGTRINGGKDAASPRY 940 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 + LS ++LL + ++ + D EP+ +P +L+NG GI G A I Sbjct: 941 IFTMLSPLAKLLFPAVDSNLLKFLYD-DNQKVEPEWYIPIIPMVLVNGAEGIGTGWACKI 999 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 P +++RE+ ++ + + Q+L +G + I ++ G+ Sbjct: 1000 PNYDVREIVNNINRMLSRQEP--LQMLPSYKG-----------FKGVIHEL---GQNQYL 1043 Query: 241 MRAVWK-KEDGAVVISALPHQVSGARVLEQIAAQM---RNKKLPMVDDLRDESDHENPTR 296 + + V I+ LP + E + M +K ++ D ++ Sbjct: 1044 VSGEVSVIDKNTVEITELPVRTWTQAYKESVLEPMLQGSDKTPALISDYKEYHTDTTVKF 1103 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNM---------IGLDGRP---AVKNLL 344 LV + + L L+ S N + + D +++ Sbjct: 1104 LVRMSEEKLAQAEA--AGLHKVFKLQSSLTCNSMVTACFHRPEHVLFDHMGCLKRYESVQ 1161 Query: 345 EILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVA-FLNIDEVIEIIRNEDE----- 398 +IL E+ R + R ++ + + L I+ I I Sbjct: 1162 DILKEFFELRLHYYKLRRDWLVGSLGAEAAKLSNQARFVLEKIEGKISIENKSKRELIRM 1221 Query: 399 ----------------PKPALMSRFGL--TETQAE-----------------------AI 417 + + RF QA+ I Sbjct: 1222 LVQKGFESDPVAAWTRAQEKELRRFQSKREPRQAQEEDEGNDSDSSLDSGSSSGPNFNYI 1281 Query: 418 LELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 L + L L K + ++ ++ E ++LQ + +L K++L + Sbjct: 1282 LNMPLWCLTKEKVEELLKQRDLKRGELNELQ-----RKSPEDLWKEDLAVFVEELEK 1333 >UniRef50_D1ZCL6 DNA topoisomerase 2 n=6 Tax=Sordariomyceta RepID=D1ZCL6_SORMA Length = 1915 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 97/553 (17%), Positives = 202/553 (36%), Gaps = 68/553 (12%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + E+++ +F + +SM + R++P + DGLKP QR++++ + L K Sbjct: 785 LDHSTEKISYTDFVNRELILFSMADNI-RSIPSMVDGLKPGQRKVLFGCFKQNLIHDQKV 843 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPD-DPKSFAA 117 + A V YH HG+ + + +V +AQ F S ++ GN+G+ A+ Sbjct: 844 VELAGYVSKE-AAYH-HGEQSLQQTIVGLAQNFVGSNNINCLEPSGNFGSRLSGGSDAAS 901 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY +RLS + + L + ++ + DG L EPK+ LP +L+NG GI G + Sbjct: 902 ARYIHTRLSPLARKIFHPLDEPNLEFQFD-DGKLIEPKVYAPILPMVLVNGADGIGTGWS 960 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T IP ++ ++ + + ++ D P P + +G Sbjct: 961 TSIPNYHPLDIVENLKRRM-GRDSSGDGEEK----PFEPMTPWFRGWKGTPEP---DGPN 1012 Query: 238 SVRMRAVWKK---EDGAVVISALPHQVSGARVLEQIAAQMR-NKKLPMVDDLRDESDHEN 293 + + + V ++ LP ++ ++ +R +K + D ++ +DH+ Sbjct: 1013 KFKFNGIVEVNPQNPNEVDVTELPIRMWTDDFKSKLEEIIRGDKGPSWIKDYKEYNDHQT 1072 Query: 294 PTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEW 350 ++ + + + L L K+ N++ D R + N EI+ E+ Sbjct: 1073 VHFIIALEEKQMSSA--LRDGLIEKFKLTKTVAT-TNLVAFDTRGKIYKYENPQEIMEEY 1129 Query: 351 LVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE------------ 398 +R + R + L+ L+ I E I+ + + Sbjct: 1130 YHYRLNLYGERKKHWLKVYHADYRKLQNQYRFISEIIENKLIVAKKKKSVLVQELRERKY 1189 Query: 399 --------------PKPALMSRFGLTETQA-------EAILELKLRHLAKLEEMKIRGEQ 437 P L + E A + +L + + L K++ + Sbjct: 1190 EAFPPKSDGRNVKSPDEELGAAENEDEEDAVGGARDYDYLLSMPIWSLTFERLDKLKQQI 1249 Query: 438 SELEKERDQLQGILASERKMNNL------LKKELQ---ADAQAY-GDDRRSPLQEREEAK 487 + + E D+L + + +L +++L+ + RR + ++ Sbjct: 1250 AAKKAEYDELDALSEKDLWCKDLDAFTAEWEEQLRLEDEVRKEIRQKGRRVSYKGGAVSR 1309 Query: 488 AMSEHDMLPSEPV 500 E Sbjct: 1310 LKKPRAAKDDEDF 1322 >UniRef50_B9PK68 DNA topoisomerase 2 n=3 Tax=Toxoplasma gondii RepID=B9PK68_TOXGO Length = 1688 Score = 388 bits (996), Expect = e-106, Method: Composition-based stats. Identities = 117/525 (22%), Positives = 196/525 (37%), Gaps = 82/525 (15%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 A L+ +F + +S Y +R++P + DG KP QR++++A + + K + Sbjct: 771 NASSLSYSDFVNKELILFSRYD-TERSIPQLVDGWKPGQRKVLFACIKKNMKHELKVAQL 829 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRY 120 A V +V YH HG+++ + +V MAQ F S ++ G +G+ + K +A RY Sbjct: 830 AGYVSEV-SAYH-HGEASLQQTIVTMAQRFVGSNNLNFLEPVGQFGSRKEGGKDASAARY 887 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 +RL+ Y+ L+ E ++ +G EPKM +P +L+NG+ GI G ++ + Sbjct: 888 IFTRLAFYTRLVFHEADDPILEYEYE-EGQRIEPKMYVPVIPTVLINGSEGIGTGWSSFV 946 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 P +N R+V + ID + R I + G G Sbjct: 947 PNYNPRDVIENLRRYIDGEEMQ-------------RMTPWYRGFRGRIEE-NAAGTGFET 992 Query: 241 MRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMR--NKKLPMVDDLRDESDHENPTRLV 298 + V + + + I+ LP + E + + K+ ++ D RD S HE V Sbjct: 993 IGLVRRCGEDSYEITELPIKRWTQDYKEWLEENLPTAEKRDTLIADYRDCSSHEEIHFTV 1052 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPA---VKNLLEILSEWLVFRR 355 V L L+ S I N+ D N LEI+ E+ R Sbjct: 1053 KV--GEERVERPEREGLEKYFKLKSSLSI-TNLTLFDPHGRVQRYANELEIIKEFAPIRL 1109 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRF-------- 407 + RR Y L + K IL L L + II N+ K AL+ Sbjct: 1110 EFYHRRKAYCLAMLEKARRILSNRLRFILAVVNGELIINNKR--KKALIEELFSQGYDPM 1167 Query: 408 --------------------------------------GLTETQAEAILELKLRHLAKLE 429 G T + +L + + L + Sbjct: 1168 KEIEDAANAGIRAALKRDVIVDDEALAEGGEEEEEIVAGCTAKHYDYLLGMPMWSLTLEK 1227 Query: 430 EMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 +RGE + E E ++L+ + L K++L A A Sbjct: 1228 VEDLRGEMRQKELELEELRH-----TSVQTLWKRDLDALVAALDK 1267 >UniRef50_A7ANB1 DNA topoisomerase 2 n=3 Tax=Piroplasmida RepID=A7ANB1_BABBO Length = 1437 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 96/516 (18%), Positives = 194/516 (37%), Gaps = 64/516 (12%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 ++L +F + +S+Y +R++P + DG KP QR++++ + L K + Sbjct: 656 SIKKLRYTDFINKELIQFSIYD-TERSIPSVVDGWKPGQRKVLFGCLKRNLVGECKVAQL 714 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRY 120 V + YH HG+++ + ++ MAQ F S +++ G +G+ + K +A RY Sbjct: 715 TGYVAE-HSAYH-HGEASLQQTIINMAQNFVGSNNINVLEPCGQFGSRKEGGKDASAARY 772 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 ++L+ + L+ E ++ N +G EP +P +L+NG+ GI G ++ I Sbjct: 773 IFTKLNPITRLIFVEEDDNILEYQ-NEEGQTIEPMYYIPTIPMVLVNGSEGIGTGFSSQI 831 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 P +N ++ ++ P EI N +G Sbjct: 832 PNYNPLDIIDNLKRYLNNVDMK-------------PMVPWYHKFTGEIEP---NDKGGFD 875 Query: 241 MRAVWKK--EDGAVVISALPHQVSGARVLEQIAAQMR--NKKLPMVDDLRDESDHENPTR 296 ++ E+G + I+ LP + + + + N K P++ D S HE+ Sbjct: 876 CLGNYQWLDENGLLEITELPIRKWTHDYRVFLESLEQGVNGKEPLILGFVDNSTHESVHF 935 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSY-RINLNMIGLDGRPA-VKNLLEILSEWLVFR 354 + V + + + + L S N+ + + + N LEI+ ++ R Sbjct: 936 TLNV--NPECIEEVINEGVDKVFKLRTSIATTNMTLFDANKKLKRYSNELEIIRDFAAVR 993 Query: 355 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNI-DEVIEIIRNEDEPKPALMSRFGLTET- 412 T +R Y + + L + + + +E + + + A + G Sbjct: 994 LATYEKRKTYLINNLKLLLRRISNQVRFIHMVVNEELVLFKKAKATLVAELRDLGFDSNT 1053 Query: 413 ------------------------------QAEAILELKLRHLAKLEEMKIRGEQSELEK 442 +L + L L + K+ E ++ E Sbjct: 1054 DILKGSEEPSTLNEPVTPSRRSGTQDAPGADYNYLLNMPLWSLTLEQVQKLNEEHAQKEN 1113 Query: 443 ERDQLQGILASERKMNNLLKKELQADAQAYGDDRRS 478 + L A++ M++L K E+ A AY D + Sbjct: 1114 QLRILLETTATDMWMDDLNKVEV-AIKMAYQQDEIT 1148 >UniRef50_B7XIW3 DNA topoisomerase 2 n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XIW3_ENTBH Length = 1159 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 101/482 (20%), Positives = 193/482 (40%), Gaps = 51/482 (10%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + + + +F + +SM + R++P + DGLKP QR+++++ + L K Sbjct: 638 LDQSMSNITVRDFVNKELILFSMADNI-RSIPSVIDGLKPGQRKVIFSCFKRNLKTEIKV 696 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPD-DPKSFAA 117 + V + YH HG+++ ++ +A F S L+ G +G+ K A+ Sbjct: 697 AQLVGYVSE-HSAYH-HGEASLAATIINLAHDFVGSNNINLLLPLGQFGSRLLGGKDSAS 754 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY + L+ S L+ E + D + EP +P +L+NGT GI G + Sbjct: 755 PRYIFTNLNPLSRLIFHEHDIPILE-SQIEDNLVIEPTYYVPIIPMVLVNGTDGIGTGWS 813 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T+IP HN ++ + L++ + ++++ + + I KI G Sbjct: 814 TNIPNHNPLDLIKNIKRLLNNQEP--EEMIPYYR-----------NYKGTITKINA---G 857 Query: 238 SVRMRAVW--KKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 + + LP V E + + + ++ +D S + Sbjct: 858 KYISCGKVFENINKKEINVVELPIGVWTQAYKEYLDQAIADN---VIKSFKDYSTDKTID 914 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEWLV 352 L+ MN+ ++ L S N NM+ D +K N LEIL ++ Sbjct: 915 ILIH------------MNNNEFSSKLTTSISTN-NMVCFDRNGKIKKYHNTLEILKDFYE 961 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPAL-MSRFGLTE 411 R + +R YRL+ + L+ L+ + + II + L + R T Sbjct: 962 VRLEFYNKRKIYRLKLLADELNKLKNKVRFIEGVITGSIIITQRPLNEIILELERKEFTR 1021 Query: 412 -TQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQ 470 E +L++K+ L K + K+R E + E ++L+ + + NL ++L + Sbjct: 1022 YDNYEYLLDMKISSLTKEKINKLREEYNNKNIEYNELKN-----KSIKNLWFEDLDKFEK 1076 Query: 471 AY 472 Y Sbjct: 1077 EY 1078 >UniRef50_Q1NV80 DNA gyrase/topoisomerase IV, subunit A n=4 Tax=Deltaproteobacteria RepID=Q1NV80_9DELT Length = 711 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 144/666 (21%), Positives = 274/666 (41%), Gaps = 95/666 (14%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + A+ LH + +L+Y+ YVI +RA+P + DGLKPVQRRI+ + + +F K Sbjct: 51 ETAQYGELHRLFDENFLDYTSYVIRERAIPDLADGLKPVQRRILQTLHNMD---DGRFHK 107 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTE 122 A VG+ + K HPHGD++ + A+V +A + L+D QGN+G +A RY E Sbjct: 108 VANVVGETM-KLHPHGDASIFSALVNLA----NKGYLIDRQGNFGNVHTGDGASAPRYIE 162 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 RLS + + + +++ ++DG ++EP LPARLP +LL G GIAVGMAT I P Sbjct: 163 CRLSPLARETM--FNKELTEFIDSYDGRMKEPVSLPARLPLLLLQGADGIAVGMATKIMP 220 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HN E+ A+ ++ + L PD+P + S YE+G G +R R Sbjct: 221 HNFGELLTASKQILREEPFEL--------FPDFPQGGLLDAS------GYEDGNGRLRCR 266 Query: 243 AVWKK-EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 A + +D +VI +P+ + ++E + R K + + D + + + + Sbjct: 267 ARIETRDDKTIVIRDIPYGTTTQSLIESVEKAARAGKFK-ILSIDDYTAED---VEIEIK 322 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR-- 359 + ++ + L+A TD E N +I + PA+ + E+L E R ++ Sbjct: 323 LARGFKAEETIKALYAFTDCEIPISPNFTVI-REQTPAIMTVSEVLRENTARLRQLLKKE 381 Query: 360 ------RRLNYRLEKVLKRLHILEGLLVAFLN---IDEVIEIIRNEDEPKPALMSRFGLT 410 R ++L+++ I E L + V+ I +P A + R ++ Sbjct: 382 LELDLARLREKLQARLLEQIFIEERLYKQIEECPSLAVVLTTIDKALKPFAAELVR-PVS 440 Query: 411 ETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQ 470 E +LE++++ +++ + + + E + K+ ++ LA + + L + Sbjct: 441 REDLERLLEIRIKRISRYDIERQKKEIKGIRKDIVAVEKNLAD---LTAYAIRFLDDLLK 497 Query: 471 AYGD--DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAG 528 YG RR+ L +E +A + LS + + A Sbjct: 498 RYGQQYPRRTELTSFKEVQASQ-----------VALSNLSLAY-DPESGFLGTQVKTSAE 545 Query: 529 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA-------RGQGEP----LTGKLTLP 577 + ++ + +G + +P + G+ + + Sbjct: 546 NRLA----CSEYDKILLISRSGWY---KVVAVPDKIFVGHDLKWWGKAADKTIFNLVYRD 598 Query: 578 PGATVDHMLMESDDQKLL-----------------MASDAGYGFVCTFNDLVARNRAGKA 620 + ++ + + +L + + +G R+R + Sbjct: 599 GAQNLCYVKRFTTPKFILDKEYRLFAEHRRSEILFLKTGSGVNIRTQLAP-SPRSRKNRE 657 Query: 621 LITLPE 626 + L + Sbjct: 658 VFRLDD 663 >UniRef50_D2QEJ6 DNA topoisomerase (ATP-hydrolyzing) n=2 Tax=Bacteroidetes RepID=D2QEJ6_9SPHI Length = 904 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 158/759 (20%), Positives = 294/759 (38%), Gaps = 93/759 (12%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 ++ + EN +L+Y+ YVI++RA+P + DGLKPVQRRI++A+ E+ +F K A Sbjct: 48 DQTVVSGLYENYFLDYASYVILERAVPAVEDGLKPVQRRILHALKEMD---DGRFNKVAN 104 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRL 125 +G + ++HPHGD++ EA+V + Q + L D QG+WG AA RY E RL Sbjct: 105 VIGQTM-QFHPHGDASIGEALVNIGQ----KELLFDTQGSWGDVRTGDGAAAPRYIEVRL 159 Query: 126 SKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNL 185 SK+++ + T +W ++DG +EP LP + P +L G GIAVG++T I PHN Sbjct: 160 SKFAQD--AIYNDKTTEWQLSYDGRKREPITLPVKFPLLLAQGVEGIAVGLSTKILPHNF 217 Query: 186 REVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR--GSVRMRA 243 E+ A+I ++ +L PD+ T I S Y +G G VR+RA Sbjct: 218 NELIDASINILKDKPVSL--------FPDFQTGGLIDVSN------YNDGHRGGKVRVRA 263 Query: 244 VW-KKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDES---DHENPTRLVI 299 + + + I +P+ V+ +++++ I K+ + R+ + D+ ++ Sbjct: 264 KIEEVDKKILAIRDVPYGVTTSQLIDSIVKAAELGKIRIKAPSRNVAAVVDNTAKDVEIL 323 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVR 359 V V D ++ L+A TD E S N +I D +P ++ +IL ++ Sbjct: 324 VHLQPGVSPDVTIDALYAFTDCEVSISPNACVIIGD-KPHFVSVTDILRVNTHQTVHLLQ 382 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLN-----------IDEVIEIIRNEDEPKPALMSRFG 408 R L R ++++RL + N + V+E I +P L R Sbjct: 383 RELEIRRSELMERLLYSSLEKIFIENRIYRKIEECETFEAVLEAIDKALKPHKKLFYRV- 441 Query: 409 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 +T+ + E+K++ ++K + K LE+E + + LA+ + + Sbjct: 442 ITQDDLIRLTEIKIKRISKYDGFKAEELMRRLEQELAETEDNLAN---ITRFAIAYYKDL 498 Query: 469 AQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAG 528 + YG R + R + V +Q +V G G K Sbjct: 499 QKKYGKGRERKTEIRAFNTIAA--------SVVAAANQKLYVDREGGFI----GYGLKKD 546 Query: 529 DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLME 588 + ++ G+ + G+ + +++ Sbjct: 547 EYVSDCSD---IDDIIIFRRDGKCMVVKIAE-KVFVGKDIVYVSVFKKNDERKIYNLVYL 602 Query: 589 SDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAI-- 646 + MA + + + + ++ ++ I Sbjct: 603 DGKSGISMA------KRFPVTGVTRDREYDLTMGNPK--SKLTYFSANDNGEAEVITINL 654 Query: 647 ----TQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTIH 701 T + F + + ++ +GN + P + + G++ L + Sbjct: 655 TAQCTAKIKQFDFDFASVGIKNRSAQGNILTKYPVRKITQKSGGVSTLGGVD-------- 706 Query: 702 VGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEID 740 + R RG L+ D + + Sbjct: 707 --------IWYDEHLGRLNRDERGRLLGNFDAKDCILVV 737 >UniRef50_C9S837 DNA topoisomerase 2 n=2 Tax=Sordariomycetes RepID=C9S837_VERA1 Length = 1688 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 110/572 (19%), Positives = 218/572 (38%), Gaps = 76/572 (13%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + + + +F + +SM M R++P + DGLKP QR++++A + L K Sbjct: 725 LDHSTKSITYDDFVNRELILFSMADNM-RSIPSVLDGLKPGQRKVMFACFKRNLTKDQKV 783 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPD-DPKSFAA 117 + A V + YH HG+ + + ++ +AQ F S ++ GN+G+ A+ Sbjct: 784 VELAGYVSEK-AAYH-HGEMSLQQTIIGLAQNFVGSNNVNCLEPSGNFGSRLAGGSDAAS 841 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY +RLS ++ + S L + + V DG EPK+ +P +L NG GI G + Sbjct: 842 PRYIHTRLSPFARKIFSVLDEPNLE-VQMEDGKPIEPKVYAPIIPMVLCNGADGIGTGWS 900 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T IP ++ E+ +A + + + + P + ++ Sbjct: 901 TSIPNYHPMEIVRAIKRRMGRLDSDDTEGK-----PFETMMPWFRGWKGTPEPAEKD--- 952 Query: 238 SVRMRAVWKKEDGA--VVISALPHQVSGARVLEQIAAQMRNKKLP-MVDDLRDESDHENP 294 + +++ +D ++I LP ++ ++ + K P + D ++ +DH+N Sbjct: 953 RYKFNGIYETDDKTGEIIIKELPIRMWTDDFKAKLEEVISGAKGPAWIKDYKEFNDHKNV 1012 Query: 295 TRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRP---AVKNLLEILSEWL 351 ++ + + D+ + + L K + N++ D + + +IL E+ Sbjct: 1013 NFVIQLDEKHYKDIHKTHEGIMDRFKLNKQVATS-NLVAFDSTGRIRKYEKVEDILEEFY 1071 Query: 352 VFRRDTVRRRLNYRLE-------KVLKRL----HILEGLLV---------AFLNIDEVIE 391 V+R D R + L K+ + I++G L+ D E Sbjct: 1072 VYRLDMYSARKKHWLGVYHSDYRKLKNQARFIQEIIDGELIVSKKRKPVLVQELRDRKYE 1131 Query: 392 IIRNEDEPKPALMSRFGLT-----------ETQAEAILELKLRHLAKLEEMKIRGEQSEL 440 D K A + + +L L + L ++ S + Sbjct: 1132 AFPKNDGKKQATTEEEDMDASDNEDDSVGGAADYDYLLSLPIWSLTLERLERLN---SAI 1188 Query: 441 EKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPV 500 K++ + +LA K +L ++L + E + D + S+ Sbjct: 1189 MKKKGEHDALLAQSEK--DLWCQDLDEFTE-------------EWEAQLEMDDKIQSK-- 1231 Query: 501 TIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFK 532 +++MG RS K KA D F+ Sbjct: 1232 ---INRMGRRRSRKIGAGGGKVSRNKADDDFE 1260 >UniRef50_A5E7X7 DNA topoisomerase 2 n=4 Tax=Saccharomycetaceae RepID=A5E7X7_LODEL Length = 1492 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 104/548 (18%), Positives = 202/548 (36%), Gaps = 100/548 (18%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 + + +F + +SM + R++P + DGLKP QR+I+Y + L K + A Sbjct: 748 EIPISDFINKELILFSMSDNV-RSIPSMLDGLKPGQRKILYGCFKRKLKNEIKVAQLAAY 806 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTES 123 V DV YH HG+ + + ++ MAQ F S L+ G +G+ K AA RY + Sbjct: 807 VADV-SSYH-HGEQSLVQTIIAMAQNFVGSNNINLLKPNGAFGSRATGGKDAAAARYIFT 864 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 L++ + + +E +++ + D + EP+ LP IL+NG GI G +T+IP + Sbjct: 865 ELNEITRTIFNEADDPLLNYLQD-DESTVEPQWYLPVLPMILVNGADGIGTGWSTNIPSY 923 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 N ++ L+ +++ +G +I K+ G ++ Sbjct: 924 NPLDIVANLRRLMRGEPM--EEMNPWYKG-----------WYGDIEKV---GPQKFKISG 967 Query: 244 VWK-KEDGAVVISALPHQVSGARVLEQI-AAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 + +D + IS +P + V E + A K + + D+ E H R V V Sbjct: 968 RIEQIDDNTIEISEVPVKTWTNTVKEFLLAGLGNEKTVQWIKDM--EEQHTTSIRFV-VK 1024 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRP---AVKNLLEILSEWLVFRRDTV 358 S+ + L L + + NM+ D ++L+I+ ++ R + Sbjct: 1025 LSDAEMAKALSVGLLEKFKLVSTISL-ANMVAFDPHGRIKKYLDVLDIVKDFYFVRLEYY 1083 Query: 359 RRRLNYRLEKVL------------------KRLHILEGLLVAFLNIDEVIEIIRNEDEPK 400 +R N+ LE + K+L + + I E + ++ + + Sbjct: 1084 EKRKNHMLEILQHKHSMISEQARFIKMIIDKQLSVANKKKKELIGILEANKFLKFTKDGR 1143 Query: 401 ---------------------------------PALMSRFGLTETQ-------------- 413 A +S+ L E Sbjct: 1144 PIEQVVVDDDDDDEDEDVIDGAGGAGVDGIAGGEADISQLNLKEVDENPTNEHRPETVSS 1203 Query: 414 -AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKM--NNLLKKELQADAQ 470 + IL + + L +K+ E+ + + + L + + M ++ + + Sbjct: 1204 SYDYILGMTIWSLTHERYVKLLAEKEKYQNQLQDLVSKTSVDLWMHDLDVFVEAYELFLA 1263 Query: 471 AYGDDRRS 478 +R S Sbjct: 1264 REEQERES 1271 >UniRef50_B6K4K4 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K4K4_SCHJY Length = 1499 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 97/514 (18%), Positives = 195/514 (37%), Gaps = 74/514 (14%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 + + F + +SM + R++P + DGLKP QR+++Y M + L AK ++ A + Sbjct: 721 IEIKNFINQELILFSMADNI-RSIPSVVDGLKPGQRKVIYGMFKKNLKNEAKVEQLAGYI 779 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTESR 124 + YH HG+++ + ++ +A F S L+ +G +G+ + K A RY + Sbjct: 780 SEQT-AYH-HGETSLQQTIIGLAHNFVGSNNINLLLPKGQFGSRIEGGKDAAQPRYIFTM 837 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 S+ + LL + +++ N +G EP +P +L+NG GI G +T IP N Sbjct: 838 PSRMARLLFDKRDDPILNYL-NDEGLWVEPDYYVPIVPMLLVNGAEGIGTGWSTFIPNFN 896 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 ++ + LI P P + I+++ + ++ + Sbjct: 897 PSDLVKNIRHLIKNE-------------PLEPMHPWYRGFKGTIQQMTPD---RYKVSGI 940 Query: 245 WK-KEDGAVVISALPHQVSGARVLEQIAAQMR-NKKLPMVDDLRDESDHENPTRLVIVPR 302 + D V I+ LP ++ + E + + M +K+ + D + EN V + + Sbjct: 941 IEQVSDDTVDITELPVRLWTQDMKEYLESLMAADKQGSFIKDYTEYHTEENVHFRVKLTK 1000 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRP---AVKNLLEILSEWLVFRRDTVR 359 + L + ++ + NM+ D + + +IL E+ R + Sbjct: 1001 EGMATA--LAEGLENKFKVARTLATS-NMVAFDPQGRIRKYDSAYDILKEFYEVRLRYYQ 1057 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED-----------------EPKPA 402 RR + + + + I E ++ + +PK Sbjct: 1058 RRKEHLVNDLETVYTKISNQARFIHMIIEGTLVVAKKKRSVLVQELREKGFKAIPKPKKG 1117 Query: 403 LMSRFGLTE--------------------TQAEAILELKLRHLAKLEEMKIRGEQSELEK 442 ++ E +L + + L M + ++ E E+ Sbjct: 1118 RLAEIAAQETAANRDADDDAEEEDASPEADDFTYLLNMPVYSLTYERYMNLLKKKGECEE 1177 Query: 443 ERDQLQGILASERKMNNL------LKKELQADAQ 470 E D+L I + + +L +KEL DA+ Sbjct: 1178 ELDKLMKITPKDIWLTDLEGFEKEWEKELDEDAK 1211 >UniRef50_Q6PUA3 DNA topoisomerase 2 n=4 Tax=Tetrahymena thermophila RepID=Q6PUA3_TETTH Length = 1662 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 97/515 (18%), Positives = 190/515 (36%), Gaps = 80/515 (15%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 + L +F +N+S R++P + DGLKP QR+I++A + L K + + Sbjct: 650 KHLTYKDFVNKELINFSNSDN-ARSIPSLCDGLKPGQRKILFACFKRNLKNEIKVAQLSG 708 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTE 122 V + YH HG+ + +V MAQ F + + G +G+ K A+ RY Sbjct: 709 YVAE-HSAYH-HGEQSLESTIVGMAQSFVGTNNINYLMPIGQFGSRNMGGKEAASARYIH 766 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 + L+K + + E ++ + +G EP +P LLNG GI G +T IP Sbjct: 767 TCLNKITRCVFPEPDDHILYYLED-EGQQVEPIYYLPIIPTALLNGADGIGTGWSTSIPC 825 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 +N RE+ + + T LL +G +I N + + + Sbjct: 826 YNPRELVDSIEKRMMGVPFT--DLLPWYKG--------------FTGEISNNEKSQITVS 869 Query: 243 AVWK-KEDGAVVISALPHQVSGARVLEQIAAQMR--NKKLPMVDDLRDESDHENPTRLVI 299 + + + I+ LP + + ++ K P ++D+++ +V Sbjct: 870 GKYHLVNETTIEITELPIKKWIRDYKNFLEEKLESTKDKDPEIEDIKEYHAGNRVHFVVK 929 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPA---VKNLLEILSEWLVFRRD 356 + + + + L+ + NM+ + N+ EI+ E+ R + Sbjct: 930 MSEKQMEKVQR--EGIDKYFKLQSTIPT-TNMVLFNHEGKLTRYANICEIMEEFYEVRLN 986 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRF--------- 407 +RR Y + K+ + L IL L + + E IR + + L+ Sbjct: 987 AYKRRKEYLVSKIERDLEILSNKKRFILAV--INESIRVRNAKRKDLIKELSVQGYVQMK 1044 Query: 408 --------------------------------GLTETQAEAILELKLRHLAKLEEMKIRG 435 + + +L L + L + +I+ Sbjct: 1045 DMPKIKSSKLTSQLEQEQNQDSNEENFETNPNEINAKEYNYLLSLPMWSLTYEKVEEIKQ 1104 Query: 436 EQSELEKERDQLQGILASERKMNNLLKKELQADAQ 470 EQ + E D+L ++ ++ K++L+ + Sbjct: 1105 EQKNKQDELDKLVA-----TEVIDIWKEDLKNFIE 1134 >UniRef50_P06786 DNA topoisomerase 2 n=27 Tax=Fungi/Metazoa group RepID=TOP2_YEAST Length = 1428 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 95/520 (18%), Positives = 190/520 (36%), Gaps = 83/520 (15%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + + + + +F + +S+ + R++P + DG KP QR+++Y + L + K Sbjct: 663 LDPTLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKV 721 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAA 117 + A V + YH HG+ + + ++ +AQ F S L+ G +G K AA Sbjct: 722 AQLAPYVSECT-AYH-HGEQSLAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAA 779 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY + L+K + + ++ D EP+ LP IL+NG GI G + Sbjct: 780 ARYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPILPMILVNGAEGIGTGWS 838 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T IPP N E+ + L++ + P + I EI + G Sbjct: 839 TYIPPFNPLEIIKNIRHLMNDEELEQMH-------PWFRGWTGTI---EEIEPLRYRMYG 888 Query: 238 SVRMRAVWKKEDGAVVISALPHQVSGARVLEQIAAQM--RNKKLPMVDDLRDESDHENPT 295 + + D + I+ LP + + + E + + +K P + D+ ++ D +N Sbjct: 889 RIE-----QIGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHD-DNIK 942 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEWLV 352 ++ + ++ + L + +NM+ D +K ++ EILSE+ Sbjct: 943 FIITLSPEEMAKTRKI--GFYERFKLISPISL-MNMVAFDPHGKIKKYNSVNEILSEFYY 999 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED-EPKPALMSRFGL-- 409 R + ++R ++ E++ + + I E + N+ + G Sbjct: 1000 VRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPR 1059 Query: 410 ----------TETQ---------------------------------------AEAILEL 420 + E +L + Sbjct: 1060 FNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGM 1119 Query: 421 KLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNL 460 ++ L K K+ ++ E E E + L + A + +L Sbjct: 1120 RIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDL 1159 >UniRef50_D2UZM0 DNA topoisomerase II n=1 Tax=Naegleria gruberi RepID=D2UZM0_NAEGR Length = 1457 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 106/514 (20%), Positives = 198/514 (38%), Gaps = 75/514 (14%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + + ++ +F + + +S R++P I DGLKP QR+I+++ + L K Sbjct: 687 IDHSKKEISYTDFIDKELILFSKAD-CKRSIPSIVDGLKPGQRKILFSCFKRNLKKEIKV 745 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAA 117 + A V + YH HG+ + +V MAQ F S L+ G +G K A+ Sbjct: 746 AQLAGYVSE-QSAYH-HGEDSLNGTVVNMAQNFVGSNNINLLYPGGMFGTRLQGGKDSAS 803 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY ++LS+ + + + +++ + DG EP+ LP +L+NG+ GI + Sbjct: 804 PRYIFTKLSEITRYIFPKADDPVLEYLDD-DGQSIEPRFYVPILPMVLVNGSEGIGTAWS 862 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T+I +N ++ + ALI + + +G D I ++ Sbjct: 863 TNIETYNPVDIVEGLKALIKGEEAK--EFHPWYKGFD-----------GIIERLAPT--- 906 Query: 238 SVRMRAVWK-KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 + + V + +D + IS LP ++ E++ M +++ D R+ + Sbjct: 907 KWQTKGVIEKIDDNTLDISELPIRIWTESFKERLEKMMEAQQVD---DFRENHTDVTVSF 963 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRI-NLNMIGLDGRPA-VKNLLEILSEWLVFR 354 V + D + L+ L K + N+ + +G + +L+IL E+ R Sbjct: 964 TVKMTDKQMKDAED--AGLYDYFKLFKKFSTSNMVLFSEEGGIKEYETVLDILKEFYPIR 1021 Query: 355 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRF------- 407 +R Y LEK+ K L IL + + + + E I+ + K L+ Sbjct: 1022 LKFYGKRKEYMLEKMKKELEILSNKVRFIMEV--INETIQVKKRKKADLLKELKTKKYSS 1079 Query: 408 -----------------------------GLTETQAEAILELKLRHLAKLEEMKIRGEQS 438 LT+ +L + L L + K+ E+ Sbjct: 1080 FPKEKKIAAAGDIQNEEEEEEEDEEKDVADLTDG-YNYLLSMPLWSLTVEKVKKLEKEKE 1138 Query: 439 ELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 E KE +QL+ K + EL + Sbjct: 1139 EKVKEVEQLEN-----TKPETMWLSELDEFLEKL 1167 >UniRef50_Q5KSK9 DNA topoisomerase 2 n=5 Tax=Basidiomycota RepID=Q5KSK9_COPCI Length = 1572 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 101/610 (16%), Positives = 199/610 (32%), Gaps = 107/610 (17%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + E + EF + +SM + R++P I DGLKP QR++++ + L K Sbjct: 750 LDHRLEEIPYSEFINKELILFSMADNV-RSIPSIADGLKPGQRKVIWGCFKRKLKKEIKV 808 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPD-DPKSFAA 117 + + + YH HG+++ ++ +AQ + S L+ G +G + K AA Sbjct: 809 AQLVGYISE-HAAYH-HGEASLAATIINLAQDYVGSNNLALLSPNGQYGTREIGGKDHAA 866 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY + + + +++ + D EP+ +P +L+NG GI G + Sbjct: 867 PRYIFTNAKSITRAIYHPFDDPLLNYLKD-DDVPIEPEWYMPTVPMVLINGAEGIGTGWS 925 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T+IPP+N ++ ++ + + P + E+R G+G Sbjct: 926 TNIPPYNPVDIVANLRRMMKEEEPE-------------PMTPWWRGFKGEVRP---TGKG 969 Query: 238 SVRMRAVW-KKEDGAVVISALPHQVSGARVLEQIAAQMRN-------------------- 276 + V K D V IS LP +++ A + Sbjct: 970 KYDVVGVATKINDTTVEISELPIHKWTRTFKDELEAMITGEKKDKDKDKDKDEDGKKDVV 1029 Query: 277 KKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDG 336 K MV D ++ D+ N V + + ++ L L NMI D Sbjct: 1030 KNAGMVKDFKEHHDNLNVLFEVTMNPKDLEKAEE--KGLVEFFGLTTKVST-TNMILFDF 1086 Query: 337 RPAVK---NLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEII 393 +K EIL ++ R ++R +Y+ ++ L + I + ++ Sbjct: 1087 EGKIKKYETPEEILKDFYPMRLAYYQKRKDYQALELSTAYDKLNNQIRFIEMIIKKELVV 1146 Query: 394 RNEDEPKP-ALMSRFGLTE-------------------------------TQAEAILELK 421 N + A + + T + +L + Sbjct: 1147 SNRKKADIVAELRKLNFRPFPKVAKTKTAKPDEEEEESEDEEEESGSEAVTDFDYLLGMA 1206 Query: 422 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY--------- 472 + L + K++ + E E+E L E+ +L +L + + Sbjct: 1207 IYSLTRERIEKLKQQAHEKEQELLALL-----EKSPTDLWNTDLDKFLEEWEKDCMIFEQ 1261 Query: 473 ---------GDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDA--P 521 G R+ + ++ M + + + + Sbjct: 1262 KKGEGGAVNGKKRKQRTLKTRKSIGMGRRGKDSDDDDFVPIKPNAAAKRKPAEPKRPVAS 1321 Query: 522 GLNYKAGDSF 531 K D Sbjct: 1322 SSTKKEDDDM 1331 >UniRef50_D0MV61 DNA topoisomerase 2 n=2 Tax=Eukaryota RepID=D0MV61_PHYIN Length = 1329 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 111/611 (18%), Positives = 210/611 (34%), Gaps = 68/611 (11%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + + + +F + +S R+LP + DGLK QR++++A + L + K Sbjct: 659 LDTSSGSVTYQDFVNRELIQFSHADNQ-RSLPSVVDGLKISQRKVLFACMKRKLTSEVKV 717 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAA 117 + A + YH HG+++ + +V MAQ F S PL+ G +G K A+ Sbjct: 718 AQLAGYCSE-HTAYH-HGEASLHSTIVNMAQDFVGSKNLPLLFPSGQFGTRLQGGKDAAS 775 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY + L K++ L+ E + + DG EP +P +L+NG GI G + Sbjct: 776 PRYIFTLLQKHTRLVFPEEDDALLRYADD-DGFPVEPVFYVPIIPMLLVNGAEGIGTGWS 834 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 + IP H+ V + L+D + D + + +IR+ G+ Sbjct: 835 SSIPCHHPVLVIDNLLKLLDAEEAGDDLSIVELSL----MTPWAKGFSGDIRQ---TGKH 887 Query: 238 SVRMRAVWKKEDGAVV-ISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 S R ++ + + V ++ LP + + + K + + E D Sbjct: 888 SFVSRGNVEQVNTSTVRVTELPVGKWVEDYKKFLWDLVGKKAIRSFSEHHSERDVRFDIS 947 Query: 297 LVIVPRSNRVDMDQVMN-------HLFATTDLEKSYRI-NLNMIGLDGRP-AVKNLLEIL 347 + + + D N L LE N++ DG+ + ++L Sbjct: 948 MTRSDLAKYAE-DAAENCDAGDSEALVKLLRLEAPLSTSNMHAFNADGQLVKYETSEDVL 1006 Query: 348 SEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEV-IEIIRNEDEPKPALM-- 404 ++ RR +R + ++ K + L + + ++ I E PK L+ Sbjct: 1007 RDFYGVRRKLYSKRKRHLEQRQTKEVLRLSNRIRFIQEVSTGSLQKILRERIPKAELIDL 1066 Query: 405 -SRFGLTE---------------------------------TQAEAILELKLRHLAKLEE 430 G + +L L K Sbjct: 1067 LKEHGFAPASAFKEEAIDHMGDLGLAAVGREQGKAGDLDGSEDYDYLLNTSLMSFTKEFA 1126 Query: 431 MKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMS 490 ++R E + + QLQ ++ N L + L+A + ++ S +R + A Sbjct: 1127 DRLRKEHDTKQDKLQQLQATTPAQLWRNEL--ERLRAVLSHFLNE-NSATLKRPASDAFG 1183 Query: 491 EHDMLPSEPVTIVLSQM---GWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVD 547 +E V + + S KGH + + D + Sbjct: 1184 AMAKHGAEVVIVPRNFKLLEELENSEKGHGDMSISYGLEQADDIFLTNWIGTILGPAGTC 1243 Query: 548 STGRSYAIDPI 558 GR Y++ Sbjct: 1244 HDGRIYSLRIH 1254 >UniRef50_O41065 A583L protein n=7 Tax=Chlorovirus RepID=O41065_PBCV1 Length = 1061 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 91/468 (19%), Positives = 188/468 (40%), Gaps = 41/468 (8%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + + + +F + + +S Y ++R++P + DG KP QR+++Y + L + K Sbjct: 624 LDHKKPEVPVPDFIDKELILFSRYD-LERSIPSVVDGFKPSQRKVLYCAFKRNLTSDVKV 682 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAA 117 + + V + YH HG+ + +V +AQ + S + +G +G+ K A+ Sbjct: 683 AQFSGYVAE-HSAYH-HGEVSLQGTIVNLAQDYVGSNNINWLLPEGQFGSRLQGGKDHAS 740 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY ++L+ + + + ++ + DG EP+ +P+IL+NG++GI G + Sbjct: 741 ARYIFTKLNPKTRQVFVDTDDNLLKYLYD-DGDKIEPECYVPIIPSILVNGSSGIGTGSS 799 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T+IP +N +++ LI + P Y + KI E G Sbjct: 800 TNIPSYNPKDIVDNVKRLISGEDLVEMK-------PWY---------KGFKGKIMETSPG 843 Query: 238 SVRMRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 + ++ +V+S LP E + + K + R++ + Sbjct: 844 VYVTKGLYMPNGKTIVVSELPVGKWTHDYKEHLDGLLEKKI---ISYFREKHSDTDVLFE 900 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSY-RINLNMIGLDGRP-AVKNLLEILSEWLVFRR 355 + + +D+ LE + N++ G+ L+I+ +W R+ Sbjct: 901 IDFVGNPNIDI----------LKLETTIRSTNMHAFDPSGKIKKYDTPLDIIRDWFEVRK 950 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE-PKPALMSRFGLTETQ- 413 D +R Y LE + R +I + ++ II + E A + + + Sbjct: 951 DLYVKRKAYLLEDLTHRTNIAQNKHRFITMVNNDEIIINKKHESVISAELEKLNFYKVDG 1010 Query: 414 -AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNL 460 + +L +++ L ++ E +L KE D L ++ N+L Sbjct: 1011 KYDYLLNMRISSLTLERATELEREAVKLNKELDDLSKTTETDMWNNDL 1058 >UniRef50_Q7YZS4 DNA topoisomerase 2 n=1 Tax=Physarum polycephalum RepID=Q7YZS4_PHYPO Length = 1498 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 92/486 (18%), Positives = 182/486 (37%), Gaps = 35/486 (7%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + + L +F + + + RA+P + DGLKP QR+++YA + GL K Sbjct: 1002 VDYTVKNLTYSDFVDKELVQFCRAAN-ARAIPSVVDGLKPGQRKVLYASFKRGLTQEMKV 1060 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAA 117 + A V + YH HG+ + + +V MAQ F + PL+ G +G K A+ Sbjct: 1061 AQLAGYVAE-HTAYH-HGEESLHGTIVNMAQDFVGANNLPLLLPSGQFGTRLQGGKDAAS 1118 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY ++L+ + + +L +++ DG +P+ +P +L+NG+ G+ +G Sbjct: 1119 ARYIFTKLAPLTRTIFPDLDDPVLNYLEG-DGDRIQPEFFAPIIPMVLVNGSEGLGMGWR 1177 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T IP +N + + L+ P P + + Sbjct: 1178 TSIPMYNPTNLIDNLLRLLHNE-------------PMEPLTPWYKGFKGSVE---LTPPF 1221 Query: 238 SVRMRAVWK--KEDGAVVISALPHQVSGARVLEQIAAQMR-NKKLPMVDDLRDESDHENP 294 + + V + K++ IS LP + E + ++ K P + D + + + Sbjct: 1222 TFKTYGVIEPTKKEHIFKISELPVRKWTNDYKELLTTYVKPEKGKPTLKDFSEYNTDQKV 1281 Query: 295 TRLVIVPRSNRVDM-DQVMNHLFATTDLEKSYRINLNMIGLDGRPA-VKNLLEILSEWLV 352 V PR Q L LE ++ + + + G + L+I+ ++ Sbjct: 1282 DFEVTFPRGAEAKPIPQNAQDLLKLLRLESTFFMKMVLFDRHGAIKEYMDPLDIIRDFFE 1341 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFL-NIDEVIEIIRNEDEPKPALMSRFGLTE 411 R + +R R + + L L I +++ + + GL Sbjct: 1342 VRMEYYAKRKAAREKVLENEAKRLGDKLKFVKLVISGSLKLFGRSKAELRQDLVKSGLGN 1401 Query: 412 TQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQA 471 E +L + L L K + ++ + + E + + A+ + + EL+A Sbjct: 1402 G-YENLLSIALDDLTKEKTEQLAHAKQRKDAELAETRRTSAA-----AMWEHELRALRDK 1455 Query: 472 YGDDRR 477 Sbjct: 1456 LDKAHE 1461 >UniRef50_P08096 DNA topoisomerase 2 n=1 Tax=Schizosaccharomyces pombe RepID=TOP2_SCHPO Length = 1485 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 106/570 (18%), Positives = 200/570 (35%), Gaps = 87/570 (15%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 M ++ + +F + +SM + R++P + DGLKP QR++VY + L K Sbjct: 716 MDYTQPQIPIDDFINRELIQFSMADNI-RSIPSVVDGLKPGQRKVVYYCFKRNLVHETKV 774 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAA 117 + A V YH HG+ + + +V +AQ F S L+ G +G + K+ +A Sbjct: 775 SRLAGYVASET-AYH-HGEVSMEQTIVNLAQNFVGSNNINLLMPNGQFGTRSEGGKNASA 832 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY + LS + +L + ++ N +G EP+ LP +L+NG GI G + Sbjct: 833 SRYLNTALSPLARVLFNSNDDQLLNYQ-NDEGQWIEPEYYVPILPMVLVNGAEGIGTGWS 891 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T IP +N +++ +++ + R I K+ + Sbjct: 892 TFIPNYNPKDITANLRHMLNGEPLEI-------------MTPWYRGFRGSITKVAPD--- 935 Query: 238 SVRMRAVW-KKEDGAVVISALPHQVSGARVLEQIAA-QMRNKKL-PMVDDLRDESDHENP 294 ++ + + + V I+ LP + + E + A + +K+ + D N Sbjct: 936 RYKISGIINQIGENKVEITELPIRFWTQDMKEYLEAGLVGTEKIRKFIVDYESHHGEGNV 995 Query: 295 TRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEWL 351 V + + + + L L ++ + NMI D +K ++ +IL+E+ Sbjct: 996 HFNVTLTEAGMK--EALNESLEVKFKLSRTQATS-NMIAFDASGRIKKYDSVEDILTEFY 1052 Query: 352 VFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED-------------- 397 R T +RR + + ++ KR I E ++ + Sbjct: 1053 EVRLRTYQRRKEHMVNELEKRFDRFSNQARFIHMIIEGELVVSKKKKKDLIVELKEKKFQ 1112 Query: 398 -------------EPKPALMSRF-------GLTETQAEAILELKLRHLAKLEEMKIRGEQ 437 E + AL +L + L L +++ ++ Sbjct: 1113 PISKPKKGHLVDLEVENALAEEEQSGDVSQDEDSDAYNYLLSMPLWSLTYERYVELLKKK 1172 Query: 438 SELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPS 497 E+ E D L + L +L A A+ + +ML Sbjct: 1173 DEVMAELDALIK-----KTPKELWLHDLDAFEHAWNK-----------VMDDIQREMLEE 1216 Query: 498 EPVTIVLSQMGWVRSAKGHDIDAPGLNYKA 527 E S +V K K Sbjct: 1217 EQ-----SSRDFVNRTKKKPRGKSTGTRKP 1241 >UniRef50_B7G2K9 DNA topoisomerase 2 (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G2K9_PHATR Length = 1165 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 87/499 (17%), Positives = 176/499 (35%), Gaps = 62/499 (12%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 ++ +F +++S + R++P DGLKP QR+++YA + L + K + Sbjct: 687 NVSYEDFINKEMIHFSNADNI-RSIPSAIDGLKPSQRKVLYACFKRKLKSEIKVAQLTGY 745 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTES 123 + YH HG+++ ++ MAQ F S L+ G +G A+ RY + Sbjct: 746 CAE-HTAYH-HGEASLQSTIIGMAQDFVGSNNINLLVPSGQFGTRIMGGADAASPRYIYT 803 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 L+ + L E ++ + DG EP+ +P +++NG GI G +T IPPH Sbjct: 804 YLAPIARSLFPEADDTLLSYLED-DGQQIEPEFYCPIIPLLVVNGCQGIGTGWSTFIPPH 862 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 + +V + +A +D + L ++ +G + I NG G V Sbjct: 863 SANDVLEYILAKLDGAE-RLPKIHPFARG-----------FQGRIEPD-PNGNGYVSFGR 909 Query: 244 VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 D ++I LP + + + ++ + +H +V Sbjct: 910 SSCISDRTILIDELPLRCWTNKYKGILLKMRDRGEVTSFVE-----NHNTSKVSFLVTLK 964 Query: 304 NRVDMDQVMNHLFATTDLEKSY-RINLNMIGLDGRP-AVKNLLEILSEWLVFRRDTVRRR 361 + L + L+ + N++ DG+ I+ + R + R Sbjct: 965 SAQLARMTQAGLEKSFKLKTNLQTTNMHAFNKDGQICKFDTAESIVEAFFPVRMQLYQDR 1024 Query: 362 LNYRLEKVLKRLHILE---GLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTET------ 412 + + IL G + A + D + R + + G ++ Sbjct: 1025 IALLQSLLNYEASILRNKAGFIKAVTSGDIDLTSGRRSKQETSKKLKEHGFLDSVELNAI 1084 Query: 413 --------------------------QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQ 446 + +L + L L + ++ + +KE ++ Sbjct: 1085 KNENVLWKRRQFASEKGEGGSNLEPMNFDYLLNMPLSSLTSEKIRELGEHAATKDKELEE 1144 Query: 447 LQGILASERKMNNLLKKEL 465 ++ + +L K L Sbjct: 1145 MKSTTPVDLWRRDLQKLAL 1163 >UniRef50_A4HGT2 DNA topoisomerase 2 n=11 Tax=Trypanosomatidae RepID=A4HGT2_LEIBR Length = 1501 Score = 365 bits (937), Expect = 4e-99, Method: Composition-based stats. Identities = 102/561 (18%), Positives = 191/561 (34%), Gaps = 98/561 (17%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 M +++ +F + + +S+ +R++P DG KP QR+I+++ + L S K Sbjct: 652 MDYSVRQVSYRDFVDKELILFSIAD-CERSIPSAIDGFKPGQRKILFSCFKRNLVNSIKV 710 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAA 117 + A V + YH HG+ + + +V MAQ F S PL+ G +G K AA Sbjct: 711 VQLAGYVSE-HSAYH-HGEQSLVQTIVGMAQDFVGSNNVPLLRKDGQFGTRLHGGKDHAA 768 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY +RL + + ++ + DG EP +P +L+NGTTGI G + Sbjct: 769 GRYIFTRLMHVARAIFHPADDFVVEYKDD-DGLSVEPFYYIPVIPMVLVNGTTGIGTGFS 827 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T IP +N EV + L+ + P Y + + G Sbjct: 828 TSIPNYNPLEVIRNLERLMRGEEV-------HKMQPWYFGFTGTMEEKE---------PG 871 Query: 238 SVRMRAVWKKEDGAVV-ISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 ++ VV I+ LP V + + +V R+ + Sbjct: 872 KFISHGRYEVRPDGVVCITELPIGVWTQTYKKFLEDMREK---ELVVQYREHTTDVTVDF 928 Query: 297 LVIVP---RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLE---ILSEW 350 V + V D V L L++ N+I + + + +L ++ Sbjct: 929 EVFLHPQVLEQWVAQDVVEERL----QLKEYVHA-TNIIAFNKEGQITKYWDAESVLKDF 983 Query: 351 LVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEV--IEIIRNEDEPKPALMSRFG 408 + R D +R +Y L ++ + LE ++ + E + R + E L R Sbjct: 984 YLVRLDYYAKRKDYLLGELRRLTSKLENMVRFVREVVEGTLVVTKRKKKELLEDLQGRLY 1043 Query: 409 L----------------------------TETQ--------------------------- 413 L +E Sbjct: 1044 LPFPPHAKKKLSSTTVEEEGGEAEPTTQNSEEDVLGMGSAADGGVDDGDAETPEVRRATR 1103 Query: 414 -AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 + +L +KL L ++ + + + ++ + M +L + L+ +++ Sbjct: 1104 NYDYLLGMKLWSLTAEMIARLEAQLARARHDTATMEARTPKDMWMEDL--QVLRTKLESF 1161 Query: 473 GDDRRSPLQEREEAKAMSEHD 493 R + + K D Sbjct: 1162 YAAREVEIATIQRKKVKKPFD 1182 >UniRef50_B8C981 DNA topoisomerase 2 (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8C981_THAPS Length = 1179 Score = 363 bits (931), Expect = 2e-98, Method: Composition-based stats. Identities = 95/504 (18%), Positives = 188/504 (37%), Gaps = 73/504 (14%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 + +F +N +++S + R+LP + DGLKP QR+++YA + L K + A Sbjct: 695 SITYGDFVDNELIHFSNANNI-RSLPNVVDGLKPSQRKVLYACFKRNLKDEIKVAQLAGY 753 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTES 123 + YH HG+++ + ++ MAQ F S L+ G +G A+ RY + Sbjct: 754 CAE-HTAYH-HGEASLHSTIIGMAQDFCGSNNINLLTPSGQFGTRLMGGNDAASPRYIFT 811 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 LS S LL ++ DG + EP+ +P +L+NG GI G +T IP H Sbjct: 812 HLSPLSRLLFPVDDDMLLNYKEE-DGQMIEPEYFCPIIPLLLVNGCQGIGTGWSTFIPQH 870 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 N +V A +D +T + V+G + + S+ RG Sbjct: 871 NPLDVLNYIRAKLD--ETKKPAIRPWVKGFE---GGITVDSK----------RGDYVTEG 915 Query: 244 VWKKEDG-AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 + + +VVIS LP V + A ++ +++ S + T + + Sbjct: 916 IITPQKNSSVVISELPVGVWTNDYKATLVAMLKK------AEIKSFSQNHTTTTVSFNVK 969 Query: 303 SNRVDMDQVMNH-LFATTDLEKSYRI-NLNMIGLDGRP-AVKNLLEILSEWLVFRRDTVR 359 N +++++ + T L K+ N++ D + + EI + R D Sbjct: 970 VNAAKLNRLLKGDMLKTFKLRKALSTRNMHAFTTDMKIARYNSPEEIADAFFPVRLDLYA 1029 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNID-EVIEII--RNEDEPKPALMSRFGLTE----- 411 R + + ++ + I+++ R E AL+ ++ Sbjct: 1030 DRKSVLESNMEYSASLMRNKARFIEAVSANKIDLLHGRKSKEATTALLEEMEFSKQSELD 1089 Query: 412 ---------------------------------TQAEAILELKLRHLAKLEEMKIRGEQS 438 + + +L L L L + + + + Sbjct: 1090 AIKSNNNIAQRRESSNVVMDEFMSDEESAKGAAKEYDYLLNLPLSSLTLEKIDALNDDAA 1149 Query: 439 ELEKERDQLQGILASERKMNNLLK 462 + + + +Q++ ++ +L + Sbjct: 1150 KTDTKLEQIKNTTPADLWREDLNR 1173 >UniRef50_B0EP10 DNA topoisomerase 2 n=3 Tax=Entamoeba RepID=B0EP10_ENTDI Length = 1351 Score = 362 bits (929), Expect = 3e-98, Method: Composition-based stats. Identities = 94/512 (18%), Positives = 192/512 (37%), Gaps = 72/512 (14%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + + ++ +F + +S Y +R++P + DGLKP QR++++ E + K Sbjct: 647 LDQDVDSISYEDFVHKELILFS-YDDCERSIPSVVDGLKPSQRKVLWTCLEKNIMKELKV 705 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPDDP-KSFAA 117 + + V + YH HG+ + +V MAQ F S + G +G+ K AA Sbjct: 706 SQLSGLVSEK-SSYH-HGEVSLQATIVNMAQNFCGSNNVNWLLPSGQFGSRLGGGKDQAA 763 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY +RLS S L + +++ + D EPK +P +L+NG GI G + Sbjct: 764 ARYIYTRLSSISRYLCPKDDDQILEYLVDED-RRIEPKYYCPIIPTVLVNGADGIGTGWS 822 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T + +N ++ ++ + + P + ++RK ++G G Sbjct: 823 TAVSNYNPLDLVDNCRRYLNGEEFKEMK-------PWF------RGWTGQLRK-NKDGSG 868 Query: 238 SVRMRAVWK-KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTR 296 W+ D + I+ LP Q+ + + + K + + + Sbjct: 869 -YDCYGKWRRLADDKIEITELPIQIWTDTYKQHLEKCIEAKIVKGYSEYHMVNTVHFVID 927 Query: 297 LVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEWLVF 353 LV + + + +L L S + NM + + +L+IL+E+ Sbjct: 928 LV-----QPMSDEDIWTNL----KLVSSVKT-TNMHLFNSEYKITKYHTVLDILAEFCDV 977 Query: 354 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKP-ALMSRFGLTET 412 R R +E + ++L IL + + E II N + + + + G + Sbjct: 978 RMKGYEERKKAIIESMERQLMILSNKVRFIKMVIEGDLIINNRKKNELYKDLIKLGFDQI 1037 Query: 413 Q------------------------------AEAILELKLRHLAKLEEMKIRGEQSELEK 442 + + +L +K+ L + K+ + +L+ Sbjct: 1038 RDPKKANKSKPIGESEDAEIKEEDDDDEVGGYDYLLGMKIWTLTYEKAKKLMEDCDDLKT 1097 Query: 443 ERDQLQGILASERKMNNLLKKELQADAQAYGD 474 + D ++ + ++ K+L A + Y Sbjct: 1098 QIDTVKT-----TPVKDMWLKDLDAFVKKYPQ 1124 >UniRef50_P30182 DNA topoisomerase 2 n=6 Tax=Eukaryota RepID=TOP2_ARATH Length = 1473 Score = 361 bits (928), Expect = 4e-98, Method: Composition-based stats. Identities = 87/509 (17%), Positives = 181/509 (35%), Gaps = 69/509 (13%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + ++ +F + +SM + R++P + DGLKP QR+I++ + K Sbjct: 675 LDQRQPKVTYSDFVNKELILFSMAD-LQRSIPSMVDGLKPGQRKILFVAFKKIARKEMKV 733 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPD-DPKSFAA 117 + V +L YH HG+ + A++ MAQ + S L+ G +G K A+ Sbjct: 734 AQLVGYVS-LLSAYH-HGEQSLASAIIGMAQDYVGSNNINLLLPNGQFGTRTSGGKDSAS 791 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY ++LS + +L + D N DG EP +P +L+NG GI G + Sbjct: 792 ARYIFTKLSPVTRILFPKDDDLLLD-YLNEDGQRIEPTWYMPIIPTVLVNGAEGIGTGWS 850 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRK-IYENGR 236 T IP +N RE+ L++ P + + I K + G Sbjct: 851 TFIPNYNPREIVANVRRLLNGESMV-------------PMDPWYRGFKGTIEKTASKEGG 897 Query: 237 GSVRMRAVWK-KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 + + +++ ++ + I+ LP + + + + P D++ +D ++ Sbjct: 898 CTYTITGLYEEVDETTIRITELPIRRWNDDYKNFLQSLKTDNGAPFFQDVKAYNDEKSVD 957 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRP---AVKNLLEILSEWLV 352 +I+ N + Q L + + NM D + +IL E+ Sbjct: 958 FDLILSEENMLAARQ--EGFLKKFKLTTTIATS-NMHLFDKKGVIKKYVTPEQILEEFFD 1014 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPAL-MSRFGLTE 411 R + +R ++ + L LE L + I+ + + + G T Sbjct: 1015 LRFEYYEKRKETVVKNMEIELLKLENKARFILAVLSGEIIVNKRKKADIVEDLRQKGFTP 1074 Query: 412 ----------------------------------------TQAEAILELKLRHLAKLEEM 431 ++ + +L + + L + Sbjct: 1075 FPRKAESVEAAIAGAVDDDAAEEPEEILVDPESSSSYIPGSEYDYLLAMAIASLTIEKVE 1134 Query: 432 KIRGEQSELEKERDQLQGILASERKMNNL 460 ++ ++ ++ ++ +++L Sbjct: 1135 ELLADRDKMIIAVADMKKTTPKSLWLSDL 1163 >UniRef50_B3H4G2 DNA topoisomerase 2 n=14 Tax=Magnoliophyta RepID=B3H4G2_ARATH Length = 1438 Score = 361 bits (928), Expect = 4e-98, Method: Composition-based stats. Identities = 87/509 (17%), Positives = 181/509 (35%), Gaps = 69/509 (13%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + ++ +F + +SM + R++P + DGLKP QR+I++ + K Sbjct: 675 LDQRQPKVTYSDFVNKELILFSMAD-LQRSIPSMVDGLKPGQRKILFVAFKKIARKEMKV 733 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPD-DPKSFAA 117 + V +L YH HG+ + A++ MAQ + S L+ G +G K A+ Sbjct: 734 AQLVGYVS-LLSAYH-HGEQSLASAIIGMAQDYVGSNNINLLLPNGQFGTRTSGGKDSAS 791 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY ++LS + +L + D N DG EP +P +L+NG GI G + Sbjct: 792 ARYIFTKLSPVTRILFPKDDDLLLD-YLNEDGQRIEPTWYMPIIPTVLVNGAEGIGTGWS 850 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRK-IYENGR 236 T IP +N RE+ L++ P + + I K + G Sbjct: 851 TFIPNYNPREIVANVRRLLNGESMV-------------PMDPWYRGFKGTIEKTASKEGG 897 Query: 237 GSVRMRAVWK-KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPT 295 + + +++ ++ + I+ LP + + + + P D++ +D ++ Sbjct: 898 CTYTITGLYEEVDETTIRITELPIRRWNDDYKNFLQSLKTDNGAPFFQDVKAYNDEKSVD 957 Query: 296 RLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRP---AVKNLLEILSEWLV 352 +I+ N + Q L + + NM D + +IL E+ Sbjct: 958 FDLILSEENMLAARQ--EGFLKKFKLTTTIATS-NMHLFDKKGVIKKYVTPEQILEEFFD 1014 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPAL-MSRFGLTE 411 R + +R ++ + L LE L + I+ + + + G T Sbjct: 1015 LRFEYYEKRKETVVKNMEIELLKLENKARFILAVLSGEIIVNKRKKADIVEDLRQKGFTP 1074 Query: 412 ----------------------------------------TQAEAILELKLRHLAKLEEM 431 ++ + +L + + L + Sbjct: 1075 FPRKAESVEAAIAGAVDDDAAEEPEEILVDPESSSSYIPGSEYDYLLAMAIASLTIEKVE 1134 Query: 432 KIRGEQSELEKERDQLQGILASERKMNNL 460 ++ ++ ++ ++ +++L Sbjct: 1135 ELLADRDKMIIAVADMKKTTPKSLWLSDL 1163 >UniRef50_D2V5K5 DNA topoisomerase II n=1 Tax=Naegleria gruberi RepID=D2V5K5_NAEGR Length = 1135 Score = 360 bits (925), Expect = 9e-98, Method: Composition-based stats. Identities = 98/488 (20%), Positives = 204/488 (41%), Gaps = 45/488 (9%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 ++ + +F N + +S + R++P I DGLKP QR+I++A + L K + A Sbjct: 667 KVTITDFINNELILFSNQNNI-RSIPSIVDGLKPSQRKILFACLKRDLKDEIKVAQLAGY 725 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTES 123 V + YH HG+ + Y + MAQ F + PL+ G +G A+ RY + Sbjct: 726 VSE-HSAYH-HGEQSLYGTITSMAQDFVGANNIPLLYPSGQFGTRLQGGDDAASARYIYT 783 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 RL+K + L+ + D+ DG + EPK +P +L+NG G+ G +T IP Sbjct: 784 RLNKLTRLIFLKEDDQILDYQ-EEDGMIIEPKFYLPIIPMLLVNGAEGMGTGWSTSIPSF 842 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 N ++ + L+D + + + V+ P +R KI N G + Sbjct: 843 NPIDLIDSLNILLD----SNAENIGNVKLPSLDM-----WARGFKGKIEMNDSGKFISKG 893 Query: 244 VWKKE--DGAVV--ISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVI 299 ++K + ++ IS LP + + ++ + + + + + + Sbjct: 894 IFKMKSRGDSIEFDISELPIGEWTENYKSHLQSLVKKGLIK--SKITERNTENSVGFTIA 951 Query: 300 VPRSNRVDMDQVMNHLFATTDLEKSYRI-NLNMIGLD-GRPAVKNLLEILSEWLVFRRDT 357 + D D+ LEKS+ + N+ + + N+ +I+ ++ + R Sbjct: 952 IN-----DPDEFSESQLKKLKLEKSFSLSNMTVFSENFDIIQFSNVNDIIKQFYLVRLSY 1006 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNI----DEVIEIIRNEDEPKPALMSRF------ 407 +R ++ ++++ K++ IL + I + I+ + E P+ ++ Sbjct: 1007 YHQRKSHLMKQLEKQIRILSNKVKFLNFITSNESNLNTFIKTKKENIPSFLTNVVGIVVD 1066 Query: 408 GLTETQA-EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQ 466 T Q+ + ++ + L + +I +LE + +LQ + + + K+ + K++L+ Sbjct: 1067 PTTIEQSFNYLTDMNILSLTHEHKDRIN---KQLESAQQELQQVSSDDPKL--MWKRDLK 1121 Query: 467 ADAQAYGD 474 Sbjct: 1122 RLRDELTK 1129 >UniRef50_P90520 DNA topoisomerase 2, mitochondrial n=1 Tax=Dictyostelium discoideum RepID=TOP2M_DICDI Length = 1284 Score = 358 bits (920), Expect = 3e-97, Method: Composition-based stats. Identities = 94/490 (19%), Positives = 188/490 (38%), Gaps = 48/490 (9%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + + + +F ++YS + R++P + DGLKP QR+I++A + L K Sbjct: 781 IDHSIKEITYPDFINKELIHYSWAANL-RSIPSLIDGLKPGQRKILFASFKRRLTNEIKV 839 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAA 117 + + V + YH HG+ + +V MA F S PL+ G +G A+ Sbjct: 840 SQLSGYVAEQTS-YH-HGEQSLNSTIVKMAHNFVGSNNLPLLTPSGQFGTRLQGGSDSAS 897 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY ++L + L +EL +++ +G +P +P +L+NG+ GI VGM+ Sbjct: 898 ARYIFTKLEPVARYLFNELDDPLLNYL-EEEGESIQPDYYIPIIPMLLVNGSEGIGVGMS 956 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T IP + ++ + ++ L +L+ +G + I R Sbjct: 957 TSIPLFSPIDIIDQLMLRLNNQ-VALKKLIPWYRG-----------FKGTISP----DRH 1000 Query: 238 SVRMRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 + R V K + I+ LP + E + + + ES+ EN Sbjct: 1001 TYRTNGVIKLVGRNLEITELPIGRWTSDYKEVLNDLIDKDVIKSFQ----ESNTENSVHF 1056 Query: 298 VIVPRSNRVDM--DQVMNHLFATTDLEKSYRINLNMIGLDGRP-AVKNLLEILSEWLVFR 354 I+ +N+++ D N L L S +L + + ++++ EI+ ++ R Sbjct: 1057 TILLNNNQLEQMEDLTENELIKLFKLSASLNFHLTCFDENSKIQKLESVEEIIDQFYKVR 1116 Query: 355 RDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTE--- 411 +R Y L+ + ++ L + I I+ K L+ E Sbjct: 1117 LQFYGKRREYLLKSLDNQIKRLTTTIQFLEVIASGKLKIQGRS--KQDLIKELESGEIVG 1174 Query: 412 ---------TQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI-LASERKMNNLL 461 + + L + + K + ++L K + + Q I + + + Sbjct: 1175 FENFGTHPPEVYQHLFSLSILDITKERIDNLT---NQLTKRKSEHQSISSSDPKSLWTAD 1231 Query: 462 KKELQADAQA 471 ++L+ + Sbjct: 1232 LQQLKEYLEK 1241 >UniRef50_O51066 DNA topoisomerase 4 subunit A n=20 Tax=Borrelia RepID=PARC_BORBU Length = 626 Score = 358 bits (918), Expect = 5e-97, Method: Composition-based stats. Identities = 129/672 (19%), Positives = 257/672 (38%), Gaps = 74/672 (11%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 + + ++ +L YS YVI DRA+ + DG KPVQRRI++++ E+ F K A V Sbjct: 1 MDIRTVLKDNFLQYSSYVIKDRAIASVVDGFKPVQRRIIHSLFEM---HDGNFHKVANVV 57 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSK 127 G+ + KYHPHGD++ YEA+V +A + ++ QGN+G +A RY E RL+ Sbjct: 58 GNTM-KYHPHGDTSIYEALVNIA----NKDLFIEKQGNFGNLFTGDPASASRYIECRLTP 112 Query: 128 YSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLRE 187 + +L + + ++DG EP + PA++P IL+ G+ GIAVGMA I PHN E Sbjct: 113 LAFDVL--YSKEITIYESSYDGRNNEPLLYPAKIPVILIQGSEGIAVGMAAKILPHNFNE 170 Query: 188 VAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK- 246 + A + + + PD+PT + + Y +G G V +RA + Sbjct: 171 ILNAVKSELLGESYDI--------YPDFPTGGIVDVNE------YADGNGKVLVRAKIET 216 Query: 247 KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRV 306 ++ +VI LP + ++ I +R + V + D + + + V Sbjct: 217 IDEKTIVIRELPFGETTESLISSIEKAIRKNYIK-VSSINDFTAEN---VAIELSLPRGV 272 Query: 307 DMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRL 366 +V+ L+ T+ + S +NL ++ + P V + +++ + ++ L + Sbjct: 273 YASEVIEKLYHYTNCQISISVNL-LLLSERYPVVYTIKDLIKFHAAHLQKILKMELELQK 331 Query: 367 EKVLKRLHILEGLLVAFL-NIDEVIEIIRNEDEP-----KPALMSRFGLTE----TQAEA 416 K+L+++ + I +++E I E+ L + + E Sbjct: 332 SKILEKIFYKTLEQIFIEKKIYKLLETISKEENILSIILSEVLRHKESFSREVLKEDVEN 391 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDR 476 +L++ +R ++ + K + L KE L+ I ++ + + Y + Sbjct: 392 LLKIPIRKISLFDIDKNSKDIKILNKE---LKSINSNISSIRGYSINFIDLLLAKYSKEH 448 Query: 477 RSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVK 536 + + + + V + L++ G + G+ Sbjct: 449 QRKTKISLIKSKNVKEIATKNMKVYLNLAE------------GFAGTSLFDGEFIGN--- 493 Query: 537 GKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPPG-ATVDHMLMESDDQKLL 595 ++ SY + I + + + + ++ + Sbjct: 494 ASYYDKILVFREN--SYVLKNIEDKTFIDKKNVCALVYDINNSKEQIFSIIYFNRLDNFY 551 Query: 596 MASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMF 655 Y + + K L EN + + + + T + Sbjct: 552 ------YVKRFKIDKFIT----DKVYEFLGENDEFVDFSLNP---EFVEFSTNKDIVKRI 598 Query: 656 PVSDLPQLSKGK 667 + + S+ Sbjct: 599 EIDNFMVKSRSS 610 >UniRef50_A7TEE2 DNA topoisomerase 2 n=1 Tax=Vanderwaltozyma polyspora DSM 70294 RepID=A7TEE2_VANPO Length = 1404 Score = 355 bits (911), Expect = 4e-96, Method: Composition-based stats. Identities = 88/524 (16%), Positives = 196/524 (37%), Gaps = 80/524 (15%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + + + + +F + +S+ + R++P + DG KP QR++++ ++ L K Sbjct: 662 LDPNLDAIPISDFINKELILFSLADNV-RSIPSVLDGFKPGQRKVLFCCFKINLTYEIKV 720 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAA 117 A V + YH HG+ + + +V +AQ F + L+ G++G+ K AA Sbjct: 721 GTLAAKVSEKTS-YH-HGEESLQQTIVGLAQNFVGTNNIYLLKPAGSFGSRATGGKDAAA 778 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY ++L+K + + +++ + DG+ EP+ +P +L+NG GI G + Sbjct: 779 ARYIHTQLNKVARSIFHPSDDALFNYLED-DGSPIEPEWYLPIIPMVLVNGAEGIGTGWS 837 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T+IP N ++ + L++ P Y ++ + Sbjct: 838 TNIPSFNPLDIIKNIRHLMNDEVMDE-------MYPWYRGWKGVVEKVDD---------H 881 Query: 238 SVRMRAVWK-KEDGAVVISALPHQVSGARVLEQIAAQM--RNKKLPMVDDLRDESDHENP 294 R+ + + I+ +P + + + E + + K P + D+ ++ ++ Sbjct: 882 RFRLYGKVEQVGPNVLEITEVPARTWTSSIKEYLLLGLSGNEKTKPWIKDMEEQHTND-I 940 Query: 295 TRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRI-NLNMIGLDGRP-AVKNLLEILSEWLV 352 ++ + ++ ++ L + N+ G+ +L+IL+E+ Sbjct: 941 RFIITLTPEEMAKTKKI--GVYDRFKLVSQVNLKNMVAFDAHGKIRKYDTVLDILTEFYY 998 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNI-DEVIEIIRNEDEPKPALMSRFGL-- 409 R + ++R +Y +K+ + + + I D+ + + + FG Sbjct: 999 VRLEFYQKRKDYMSQKLQWTVEKISFQVKFLKMIIDKEYTVSNKAKKIIMKELEGFGFPR 1058 Query: 410 ----------------------------TETQ-------------AEAILELKLRHLAKL 428 E Q + +L +KL L Sbjct: 1059 INKDGKPHYGSVKIEEIEEGNEIEEGNANEEQDDTVHKPSDIVGSYDYLLGMKLWDLTME 1118 Query: 429 EEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 K+R ++ E E E + L + +L +L+A + Y Sbjct: 1119 RYEKLRAQKQEKEIELETLLKL-----SPKDLWNTDLEAFEKEY 1157 >UniRef50_C3GSY0 DNA gyrase subunit A n=3 Tax=Bacillus thuringiensis RepID=C3GSY0_BACTU Length = 745 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 131/672 (19%), Positives = 261/672 (38%), Gaps = 51/672 (7%) Query: 12 EFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVL 71 ++ Y++Y+ V+ +RAL I DGLKPVQR +Y M + K ++ VG + Sbjct: 46 QYLVRGYIDYAREVLTNRALEDIRDGLKPVQRYALYWMFKEKAKDMIKSEQ----VGAGV 101 Query: 72 GKYHPHGDSACYEAMVLMAQPFSYRY-PLVDGQGNWGAPDDPKSFAAMRYTESRLSKYSE 130 KYHPH + YE++ M + Y PL+ G+G G S AA RYT + + ++ Sbjct: 102 LKYHPHNADSAYESLTKMVESNGTFYVPLLIGKGELGKKFSNGSPAASRYTSVKFHENAK 161 Query: 131 LLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQ 190 + + + D V NFD T + P++LPA +P IL+ GIAVG +T P ++V Sbjct: 162 EMFTAMDG--IDMVWNFDDTERVPEVLPASVPYILMKYADGIAVGFSTKSPSFLPQDVTN 219 Query: 191 AAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDG 250 I K + + PD+ T I + E+ K+ + G+GS R + Sbjct: 220 LVREYIRDGKCST------MIVPDFSTGGFISYTEKELEKLMKTGKGSFMTRGKVFIDGK 273 Query: 251 AVVISALPHQVSGARVLEQIAAQMRNKKLPMVD--DLRDESDHENPTRLVIVPRSNRVDM 308 +V++ +P V+ +++++I ++ + D + + + NRV Sbjct: 274 NIVVTEVPQGVTVEKIMKEIEKA----EIQGITPNGYSDLTGKDGCYFEITCRAKNRV-- 327 Query: 309 DQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEK 368 +V+ L+ T L+K + NL + + + + I+ W+ +RR + R+ L K Sbjct: 328 QEVLMELYTKTSLQKKFNSNLLAVES-KKLVITGVWGIIDRWVKWRRKVLTRQTRLDLAK 386 Query: 369 VLKRLHILEGLLVAFLN---IDEVIEIIRNED--EPKPALMSRFGLTETQAEAILELKLR 423 +++ +G + DE++E+ + + + AE I++ +L Sbjct: 387 LVESAKYTKGFIDLLAIEGARDEIVELTTKKSDNDAIKRIQEYIQCERDVAEWIIKRRLN 446 Query: 424 HLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQER 483 K + + + E +L+ L + + +RR+ + + Sbjct: 447 QFRNDN--KYINQYANYQIEIAKLEKYLENIDTLILEDMDRFDLLVSK-KHERRTEITNK 503 Query: 484 EEAKAMSEHD--MLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQ 541 + D +P + + G++R G+ +G +N Sbjct: 504 VYEVETVKEDEIEIPVSECYYQI-KDGFLRKLHVKPTSGEGI----------IFEGYTNS 552 Query: 542 PVVFVDSTGRSYAIDPITLPSARGQ--GEPLTGKLTLPPGATVDHMLMES-DDQKLLMAS 598 ++ + S G + I + G G + L V + D++K ++ Sbjct: 553 TIIALSSEGEIFRIYGNDINYLTGNDIGTYIPTYSGLANAQHVQLIWATVCDEKKYVLTY 612 Query: 599 DAGYGFVCTFNDLVARNRAGKALIT--LPENAHVMPPVVIEDASDMLLAITQAGRMLMFP 656 + G+ + + K L + E D ++ + ++ Sbjct: 613 EDGFVGFLDTAEFLVGAIKSKYLRNGISAHADKLTDVR--EYQEDSVIVVETHDKLYACA 670 Query: 657 -VSDLPQLSKGK 667 + + S+ Sbjct: 671 HLDSIKMKSRTA 682 >UniRef50_C7U0P4 DNA topoisomerase II n=2 Tax=unclassified Phycodnaviridae RepID=C7U0P4_9PHYC Length = 1072 Score = 351 bits (902), Expect = 4e-95, Method: Composition-based stats. Identities = 83/465 (17%), Positives = 175/465 (37%), Gaps = 42/465 (9%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 + L++ F +N+S+ + R++ + DGLKP QR+++YA L K + Sbjct: 639 SVKNLSITHFVRKDLVNFSLAD-LKRSIAHMADGLKPSQRKVMYACFHKNLKDEMKVAQL 697 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRY 120 A V D YH HG+ + + +V +A + S L++ G +G K + RY Sbjct: 698 AAYVADK-SAYH-HGEVSLADTIVKLANDYMGSNNINLLEPCGQFGTRLMGGKDASQTRY 755 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 ++L+K + + +++ + DG EP LP +L+NGT GI G + + Sbjct: 756 IFTKLTKDARKIFDPRDDPVLNYLDD-DGRAIEPDFYMPTLPMVLVNGTEGIGTGFSCYV 814 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVR 240 PP N +++ + ++ + P + + G+ Sbjct: 815 PPFNPKDIKENIQRSLEGHDFKEMK-------PWFRGFKGKVFKED----------GTWI 857 Query: 241 MRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV 300 VW+ + ++ LP E + M K + + S E+ ++ Sbjct: 858 TEGVWRDTGSRLKVTELPPGRWTQDYKEYLDTLMEKKVISGFTN---NSTTEDVDFEIMG 914 Query: 301 PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGL---DGRPAVKNLLEILSEWLVFRRDT 357 V + KS+ + NM G + EIL +++ R D Sbjct: 915 YTGKDV---------LKDLKMRKSFHTS-NMHLFHPTKGIYKYSSPEEILKDFVDLRLDH 964 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDE--VIEIIRNEDEPKPALMSRFGLTETQAE 415 ++R + ++ + + + + E ++ R +D+ + L F + Sbjct: 965 YKKRKEHLIKVLQTKATMAGYKSKFVTMVIEGDIVVFKRKKDDLERQLAQIFPQIGGTYD 1024 Query: 416 AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNL 460 +L +K + ++ E + +E + ++G + ++ Sbjct: 1025 YLLNIKTVQYTEECVRELLREAKQAREELEVMKGTSHIDMWKMDI 1069 >UniRef50_Q5CQG8 DNA topoisomerase 2 n=4 Tax=Apicomplexa RepID=Q5CQG8_CRYPV Length = 1797 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 96/472 (20%), Positives = 186/472 (39%), Gaps = 72/472 (15%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 +++ L +F + +S Y R++P + DGLKP QR++++A + LN K Sbjct: 803 INNQCRNLRYFDFIHKELVLFSRYD-TTRSIPNLLDGLKPGQRKVLFATFKKKLNNELKV 861 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAA 117 + A V + YH HG+S+ +V MAQ F S L++ G +G+ + K +A Sbjct: 862 AQLAGYVAE-HSAYH-HGESSLQSTIVNMAQNFVGSNNLNLLEPCGQFGSRKEGGKDASA 919 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY ++LSK++ + E ++ + DG EP +P IL+NGT GI G + Sbjct: 920 ARYIFTKLSKWTRYIFPEADDPLLTYLYD-DGQQIEPLYYVPIIPMILVNGTDGIGTGWS 978 Query: 178 TDIPPHNLREVAQAAIALIDQPKT-TLDQLLDIVQGPDYP-------------------- 216 + +P +N +++ ++ + +G +P Sbjct: 979 SSVPNYNPKDIIMNLKRMLKGEMMVPMTPWYKSFKGKIFPIKQKSKKNSASNGGGNNNRK 1038 Query: 217 ----------------TEAEIITSRAEIRKIYEN---GRGSV-----------RMRAVWK 246 +++ ++++I G G + +K Sbjct: 1039 KTAINSFNNGSNSSILIGSQVDAEDDDLQQIQRTNNMGNGIIEETLELGANYETFGNWYK 1098 Query: 247 KEDGAVVISALPHQVSGARVLEQIAAQM--------RNKKLPMVDDLRDESDHENPTRLV 298 K + +VI+ LP + E + + + N + + D RD S HE+ V Sbjct: 1099 KNEETLVITELPVRRWTQDYKEWLESTLLPAPNADNDNIENSWIIDYRDNSSHESVHITV 1158 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRI-NLNMIGLDGRP-AVKNLLEILSEWLVFRRD 356 + + M + L+ + N+ + + R + L+IL E++ R + Sbjct: 1159 RMRPEKLQQAE--MEGIEKIFRLKSTLSTSNMTLFDHNSRIVRYETELDILKEFIPIRLE 1216 Query: 357 TVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFG 408 +R NY L K+ +LE ++ + + + I ++ K L+S Sbjct: 1217 MYEKRKNYLLSKLNYEKCLLEQKILFLKLVIQGV--IGLSNKSKETLVSDLK 1266 Score = 44.5 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 24/56 (42%), Gaps = 5/56 (8%) Query: 415 EAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQ 470 + +L + L L K + + ++L K+ ++ + +L + + EL + Sbjct: 1355 DYLLSMPLWSLTKEKMELLE---ADLIKKTEEYEKLLK--TSIEEIWNTELDELLK 1405 >UniRef50_C3YYJ6 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3YYJ6_BRAFL Length = 1181 Score = 345 bits (885), Expect = 4e-93, Method: Composition-based stats. Identities = 72/360 (20%), Positives = 142/360 (39%), Gaps = 31/360 (8%) Query: 6 ERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSAR 65 + L +EF + +S +R++P + DGLKP QR++++ + K + A Sbjct: 151 KYLTFNEFVHKELVLFSNSDN-ERSIPSLVDGLKPGQRKVLFTCLKRNDKREVKVAQLAG 209 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTE 122 +V + + YH HG+++ ++ +AQ F S L+ G +G K A+ RY Sbjct: 210 SVAE-MSAYH-HGETSLMGTIINLAQNFVGSNNVNLLQPIGQFGTRIHGGKDAASPRYIF 267 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 + LS + L + + ++ + D EP+ +P +L+NG GI G +T +P Sbjct: 268 TMLSTLARKLFNTFDEPMLNYQYD-DNQKIEPEWYIPLIPMVLVNGAEGIGTGWSTKVPN 326 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 +++RE+ + +ID P + +I ++ EN Sbjct: 327 YDVREIINNMLRMIDGKDP-------------LPMNPSYKNFKGDIEELEEN---RFVAN 370 Query: 243 AVWKK-EDGAVVISALPHQVSGARVLEQIAAQM---RNKKLPMVDDLRDESDHENPTRLV 298 ++ + I+ LP + E + M K M+ D ++ +V Sbjct: 371 GEVAILDNNTIEITELPIRTWTQNYKESVLEVMLHGTEKTPSMITDYKEYHTDTTVRFVV 430 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSY-RINLNMIGLDGRPAVKN-LLEILSEWLVFRRD 356 + + + L L+ + N+ + +G N + +IL E+ R Sbjct: 431 SMTEEQLMKAEA--AGLHKVFKLQSNIASTNMVLFDHNGCLRTYNSVHQILQEFFDLRLQ 488 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 74/232 (31%), Gaps = 51/232 (21%) Query: 309 DQVMNHLFATTDLEKSYRINL-----NMIGLDGRPAVKN-LLEILSEWLVFRRDTVRRRL 362 + V L DL + +N + +G N + +IL E+ R + +R Sbjct: 516 NSVHQILQEFFDLRLQWFLNCLFVVPVLFDHNGCLRTYNSVHQILQEFFDLRLEWYTKRK 575 Query: 363 NYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNED--EPKPALMSRFGLTET-------- 412 ++ + + L L E +I N+ E L +R ++ Sbjct: 576 DWLMGMLEAEASKLNNQARFILEKIEGKLVIENKPKRELIQMLQARGYDSDPVKAWKETQ 635 Query: 413 ------------------------------QAEAILELKLRHLAKLEEMKIRGEQSELEK 442 +L + L +L++ ++ ++ +Q E + Sbjct: 636 NDKDKPDDLLDVEEEEAESVASSTASRGGPDYNYLLGMPLWNLSREKKEELLKQQREKGQ 695 Query: 443 ERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDM 494 E + L+ + ++L K +L + + ++ + + + D Sbjct: 696 ELEDLRH-----KTPSDLWKDDLNDFVEELERVEQQEKEDEQNSGKIKAKDP 742 >UniRef50_A0C0L0 DNA topoisomerase 2 n=3 Tax=Paramecium tetraurelia RepID=A0C0L0_PARTE Length = 1274 Score = 344 bits (884), Expect = 5e-93, Method: Composition-based stats. Identities = 97/532 (18%), Positives = 184/532 (34%), Gaps = 95/532 (17%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 L EF +++SM + R++P + DGLKP QR++++A + L K + Sbjct: 652 ELGYSEFIHKELIHFSMADNI-RSIPSLMDGLKPGQRKVLFACFKRNLKQEIKVVQLGGY 710 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTES 123 + + YH HGD + ++ MAQ F S L+ +G +G+ K A+ RY + Sbjct: 711 IAE-HSAYH-HGDLSLVSTIIGMAQNFVGSNNINLLLPKGQFGSRAMGGKDHASARYIST 768 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 L+K + + E + + DG + EP+ +P L+NG GI G +T I + Sbjct: 769 ALNKITRYIFPEQDDHLLKYQED-DGQMVEPEYYVPIIPMSLVNGAEGIGTGWSTSIQNY 827 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 N E+ +D P I + NG G ++ Sbjct: 828 NPIELVNQIKNRLDGQPFQ-------------PMTPFYRNF-DGIIENLPNGNGIIKGII 873 Query: 244 VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 + + I LP + E + +M ++ + DLR+ + + Sbjct: 874 DCNEATDIITIRELPIKKWTRNYKEWLDKEM-AEEGSQIVDLREYHTKYKIHFEIQMVDG 932 Query: 304 NRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKN---LLEILSEWLVFRRDTVRR 360 D+ + L + NM+ D +K + +I+ E+ R + Sbjct: 933 FVSDLKNPLE----YFKLSTPASCS-NMVLFDSNNKIKKYECVSDIMEEFYQVRLQFYHK 987 Query: 361 RLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDE--------------------PK 400 R Y + K+ + + +L+ L + IRN + K Sbjct: 988 RKEYLVSKLDREVQLLDNKLKFIKMVISEEIQIRNVKKIDLVKQLDKNGFTRFSQLIQVK 1047 Query: 401 PALMSRFGLTETQ----------------------------------------AEAILEL 420 + FG ++ Q +L + Sbjct: 1048 STKVKAFGDSQKQKKNVDDDESEDEQVSEDEDKQQKKQIQKKLQSTPSIDISEFNYLLSM 1107 Query: 421 KLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 L L + K++ E L + + ++ E + + +++L +AY Sbjct: 1108 PLFSLTYEKVEKLQEE---LNQRVQSREALVNKEISL--MWREDLDKFLEAY 1154 >UniRef50_C5KAQ6 DNA topoisomerase 2 n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5KAQ6_9ALVE Length = 1579 Score = 344 bits (884), Expect = 6e-93, Method: Composition-based stats. Identities = 88/407 (21%), Positives = 167/407 (41%), Gaps = 32/407 (7%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 L +F + +S Y +M R++P + DG KP QR++++ + L + K + Sbjct: 685 SLRYLDFINKELVQFSKYDVM-RSIPSMVDGFKPSQRKVLFCALKRNLKSDTKVAQFVGY 743 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPD-DPKSFAAMRYTES 123 V + YH HG+ + +V MAQ F S L+ G +G K A+ RY + Sbjct: 744 VSE-HSAYH-HGEQSLESCIVGMAQDFTGSNNLNLLFPSGQFGTRQQGGKDAASGRYIYT 801 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 RLSKY+ + +++ +G EPK +P +L+NG GI G +T++ + Sbjct: 802 RLSKYTRTIFHPDDDDVLEYL-TEEGQSIEPKWYCPIIPMVLVNGAEGIGTGWSTNVLSY 860 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 + RE+ ALI L + +G T + + + G VRM + Sbjct: 861 DPREIIHLLRALIRG--VELHDIHPWYRG---FTGSVERNDKNG-----YDFVGKVRMAS 910 Query: 244 VWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRS 303 +D V I+ LP + + + + + L R ++H + + + Sbjct: 911 ----DDRTVDITELPVKTWTQNYKD-LDTLVVSVILLG----RYHTEHSVHFKCTLQNEA 961 Query: 304 NRVDMDQVMNHLFATTDLEKSYR-INLNMIGLDGRP-AVKNLLEILSEWLVFRRDTVRRR 361 + +D + L L ++ N+ + DG+ ++L+I+ ++ R D +R Sbjct: 962 AKSVVDSL--GLEKAFKLRSAFSTTNMVLFDRDGKIRRYDSVLDIIKDFADLRLDMYVKR 1019 Query: 362 LNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFG 408 + + K+ K + IL + + + I + + LM Sbjct: 1020 KDSLIAKLTKEILILSNKCRFVMMV--INGEIVFQKKKIVQLMEELK 1064 >UniRef50_P34030 DNA gyrase subunit A (Fragment) n=704 Tax=Bacteria RepID=GYRA_SPICI Length = 227 Score = 339 bits (869), Expect = 3e-91, Method: Composition-based stats. Identities = 109/217 (50%), Positives = 154/217 (70%), Gaps = 1/217 (0%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 + + + +N +L+Y+M VI+ RA+P + DGLKPV RRI+YAM +L + + K Sbjct: 12 DGKIRDIDIADEMKNGFLDYAMSVIVSRAIPDVRDGLKPVHRRIIYAMWDLKMTYEKQHK 71 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 KSAR VG+V+GKYHPHGD+A YEAMV MAQ FSYRYPL+DG GN+G+ D AAMRYT Sbjct: 72 KSARIVGEVIGKYHPHGDTAVYEAMVRMAQDFSYRYPLIDGHGNFGSMDGDPP-AAMRYT 130 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+++SK + ++ ++ + T ++ N+DG+ +EP LP PN+L+NG +GIAVGMAT+IP Sbjct: 131 EAKMSKIAGEIIKDIEKETTIFIDNYDGSEEEPTFLPGYFPNLLVNGASGIAVGMATNIP 190 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTE 218 PHNL EV IA+ P+ T +L+ I++GPD+PT Sbjct: 191 PHNLNEVIDGVIAVTKNPEITTVELMKIIKGPDFPTG 227 >UniRef50_Q27537 Chromosome instability 4 n=3 Tax=Chromadorea RepID=Q27537_CAEEL Length = 842 Score = 339 bits (869), Expect = 3e-91, Method: Composition-based stats. Identities = 87/523 (16%), Positives = 172/523 (32%), Gaps = 88/523 (16%) Query: 16 NAYLNYSMYVIMD-RALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKY 74 + NY + + ++P + DGLKP QR++++A + K + A V + + Y Sbjct: 298 KDFFNYEIVCSWNLHSIPCLVDGLKPGQRKVLFACFKRANKREVKVAQLAGAVAE-ISAY 356 Query: 75 HPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTESRLSKYSEL 131 H HG+ + +V +AQ + S+ L+ G +G K A+ R ++LS+ + Sbjct: 357 H-HGEQSLMGTIVNLAQDYVGSHNINLLLPIGQFGTRLQGGKDSASARSIFAQLSQVTRT 415 Query: 132 LLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQA 191 L ++ + EP+ +P +L+NG G G +T+IP +N RE+ + Sbjct: 416 LFPAHDDNVLRFLYE-ENQRIEPEWYCPIIPMVLVNGAQGTGTGWSTNIPNYNPRELVKN 474 Query: 192 AIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKK-EDG 250 LI P R +I +I +D Sbjct: 475 IKRLIAGE-------------PQKALAPWYKNFRGKIIQI---DPSRFACYGEVSVLDDN 518 Query: 251 AVVISALPHQVSGARVLEQIAAQM---RNKKLPMVDDLRDESDHENPTRLVIVPRSNRVD 307 + I+ LP + E++ + +KK P++ D ++ +V + + Sbjct: 519 TIEITELPIKQWTQDYKEKVLEGLMESSDKKSPVIVDYKEYHTDTTVKFVVKLSPGKLRE 578 Query: 308 MDQVMNHLFATTDLEKSYRINLNMIGLDGRPA---VKNLLEILSEWLVFRRDTVRRRLNY 364 +++ L L+ M+ D + I E+ R++ +R Y Sbjct: 579 LER-GQDLHQVFKLQAVINT-TCMVLFDAAGWLRTYTSPEAITQEFYDSRQEKYVQRKEY 636 Query: 365 RLEKVLKRLHILEGLLVAFLN-IDEVIEIIRNEDEPKPALMSRFGLTET----------- 412 L + + L L I+ I + + ++ + Sbjct: 637 LLGVLQAQSKRLTNQARFILATINNKIVLENKKKTAIVDVLIKMKFDADPVKKWKEDQKL 696 Query: 413 ---------------------------------------QAEAILELKLRHLAKLEEMKI 433 + ++ L L L++ E+ K+ Sbjct: 697 KELRESGEIELDEDDLAAVAVEEGEDISSAAKAVETKLSDYDYLVGLALIKLSEEEKNKL 756 Query: 434 RGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDR 476 E E E L+ + +L +L R Sbjct: 757 IKESEEKMAEVRVLEK-----KTWQDLWITDLDNFMSELTSRR 794 >UniRef50_UPI0001924D0A PREDICTED: similar to DNA topoisomerase 2 n=1 Tax=Hydra magnipapillata RepID=UPI0001924D0A Length = 1315 Score = 337 bits (865), Expect = 9e-91, Method: Composition-based stats. Identities = 91/486 (18%), Positives = 178/486 (36%), Gaps = 64/486 (13%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGL-NASAKFKKSAR 65 ++ +F + + +S DR++P + DG KP QR I+Y + G + K + A Sbjct: 813 QIPYSDFIDKDLIFFSNVDN-DRSIPSMIDGFKPSQRMILYCCFKRGRHSKEVKVSQLAG 871 Query: 66 TVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWG-APDDPKSFAAMRYTE 122 V + YH HG+++ A++ MAQ F S ++ GN+G K A+ RY Sbjct: 872 YVSENTD-YH-HGEASLQGAIIGMAQNFPGSNNINILVPNGNFGYRRKGGKEHASPRYIF 929 Query: 123 SRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPP 182 + L + + E + + D EP + +P ++NG+ GI G + ++PP Sbjct: 930 TELHPIANYIFREEDDEILKYNYD-DDMKVEPDVFAPIIPLGIINGSQGIGTGFSNNVPP 988 Query: 183 HNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMR 242 HN +V LI++ P Y I + +R Sbjct: 989 HNPLDVVANLKRLINEKDPVD-------MLPWYNGFKGTIEKNPKATN-------KYIIR 1034 Query: 243 AVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPR 302 + + + I +P +E ++M K+ L + + Sbjct: 1035 GKYCIDGNKIHIEDIPI---VNGWIEPYESKMEQKEDDG-------------QELQKLYK 1078 Query: 303 SNRVDMDQVMNHLFATTDLEKSYRI-NLNMIGLDGR-PAVKNLLEILSEWLVFRRDTVRR 360 + ++D+ +N + +S + NLNM G+ ++ ++L E+ +R + ++ Sbjct: 1079 TGVGNLDKFLN-------MTQSLSVTNLNMFNSKGKMTKYNSISDVLYEFYEYRLEMYQK 1131 Query: 361 RLNYRLEKVLKRLHILEGLLVAF------------LNIDEVIEIIRNEDEPKPALMSRFG 408 R + K+ L I + + EVI + + PK A R Sbjct: 1132 RKEFFFLKLQNDLDISTYKVKFIREYLAKTIKIAKKKVVEVIAQLETKGYPKMASDHRLP 1191 Query: 409 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 + + ++ + L + ++ + DQ L + + + EL Sbjct: 1192 MASRSYRYLTDMSIMTLTDDKIKELENNMEHCQMLYDQY---LNTP--IKKIWLNELDEF 1246 Query: 469 AQAYGD 474 Y Sbjct: 1247 LSMYKK 1252 >UniRef50_O24308 DNA topoisomerase 2 n=3 Tax=fabids RepID=TOP2_PEA Length = 1462 Score = 332 bits (851), Expect = 3e-89, Method: Composition-based stats. Identities = 105/535 (19%), Positives = 185/535 (34%), Gaps = 92/535 (17%) Query: 5 AERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSA 64 A+ + +F + +S ++ + L K + Sbjct: 665 AKLINYKDFVNKELILFSRAD--------------------LFGSFKKKLYKEIKVAQFI 704 Query: 65 RTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGA-PDDPKSFAAMRYT 121 V + YH HG+ + ++ MAQ F S L+ G +G K A+ RY Sbjct: 705 GYVSE-HSAYH-HGEQSLASTIIGMAQDFVGSNNINLLKPNGQFGTCNLGGKDHASARYI 762 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 + LS + L E +++ N DG EP +P +L+NG+ GI G ++ IP Sbjct: 763 YTELSPVTRCLFHEHDDKLLEYL-NEDGKSIEPNWYMPIIPLVLVNGSEGIGTGWSSYIP 821 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 +N RE+ L++ + P + R I K + G G + Sbjct: 822 NYNPREIIANVRRLLNGEELV-------------PMDPWYKGFRGTIEKSAKEG-GYIVN 867 Query: 242 RAVWKKEDGAVVISALPHQVSGARVL---EQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 V + ++ I+ LP + E I N K P+++D R D + + Sbjct: 868 GTVTEIDEQTFRITELPIRKWTQDYKQFLESITDGAPNVKDPLIEDFRQNGD--DAIVDI 925 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRI-NLNMIGLDGRPAVKNLLEILSEWLVFRRDT 357 + + LF L + N+++ +G +IL E+ R D Sbjct: 926 EIKMKPEKIATILQEGLFKKFKLTSTISTSNMHLFDAEGNKKFDTPEQILEEFFPLRLDY 985 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNI--DEVIEIIRNEDEPKPALMSRF-------- 407 + Y L + + L IL+ + L + E+I R + E L + Sbjct: 986 YEKSKEYILGNLNRLLLILDNKVRFILGVVNGEIIVSNRKKAELLIELKEKGFTPMPRKG 1045 Query: 408 ------------GLTETQ---------------------AEAILELKLRHLAKLEEMKIR 434 +E Q + +L L + L K+ Sbjct: 1046 KSTKPQVAGANDDDSEEQEDAEPETASQSVSVEGATWGDYDDLLSLPIGTLTLESVQKLL 1105 Query: 435 GEQSELEKERDQLQGILASERKMNNL--LKKELQADAQAYG-DDRRSPLQEREEA 486 E++E EKE + L G + + +L +K+L Y DDR+ Q ++A Sbjct: 1106 DEKTEKEKEYEILSGTPTTSLWLKDLDEFEKKLDELDLKYAEDDRKRASQGSKKA 1160 >UniRef50_P27570 DNA topoisomerase 2 n=15 Tax=Trypanosomatidae RepID=TOP2_CRIFA Length = 1239 Score = 331 bits (849), Expect = 6e-89, Method: Composition-based stats. Identities = 101/480 (21%), Positives = 197/480 (41%), Gaps = 32/480 (6%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + + L + +F +++++ V RA+P DGLKP QR+I++AM + + +AK Sbjct: 656 IDRSKKLLTIGDFVHKEMVHFAL-VGNARAIPHCVDGLKPSQRKILWAMLKRHSSEAAKV 714 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFS--YRYPLVDGQGNWGAPDD-PKSFAA 117 + + + +V +H HG+++ E +V MAQ F+ L+ +G +G+ AA Sbjct: 715 AQLSGYISEV-SSFH-HGEASLQETIVKMAQNFTGGNNINLLVPEGQFGSRQQLGNDHAA 772 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY ++LS+++ LL E D++ +GT+ EP LP +L NG GI G A Sbjct: 773 PRYIFTKLSRFARLLFPEDDDPLLDYIDE-EGTMVEPNHYVPILPLLLCNGAVGIGFGFA 831 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T+IP + +V+ A A+I+ + ++V + + +R+ E + Sbjct: 832 TNIPSFHPLDVSAAVRAMINGESAK-QVVRNLVP--------WAVGFQGTVRRGPE--KE 880 Query: 238 SVRMRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 + + +G + +S LP S I++ + + + D S + Sbjct: 881 YIAVGKYTAHRNGRLHVSELPWMTSIEAFRSHISSLASSDVVQRIA---DYSGANHIDID 937 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR--PAVKNLLEILSEWLVFRR 355 +IV + + L L + IN + DG P +L +L R Sbjct: 938 LIVREGSMTTWAECETDL----ALSQRIYINGTVFSPDGTLSPIDADLSPVLQWHYDRRL 993 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEV-IEIIRNEDEPKPALMSRFGLTETQ- 413 D +RR ++ + L L+ + + I+ + D+ + GL Sbjct: 994 DLYKRRRTRQIGLLEMDLARLQSTRKFVEHFRQGHIDFLAATDDTLTKTCVKLGLVRVDD 1053 Query: 414 -AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 + IL+ + K K++ + + + L+ + + +L + Q Y Sbjct: 1054 GYDYILKKPITFYTKTSTEKLQADIKKTQDSIAVLKQTTPVKMWLTDL--DKFDKTFQEY 1111 >UniRef50_C4PNH1 DNA gyrase subunit A n=8 Tax=Chlamydia trachomatis RepID=C4PNH1_CHLTZ Length = 490 Score = 330 bits (847), Expect = 1e-88, Method: Composition-based stats. Identities = 124/494 (25%), Positives = 223/494 (45%), Gaps = 47/494 (9%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 L + + + Y+ YVI++RA+P + DGLKPVQRR+++ + + K K A G Sbjct: 3 NLSDLFKTHFTQYASYVILERAIPHVLDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 + HPHGD+ EA+V++A + L++ QGN+G P AA RY E+RLS Sbjct: 60 RTM-ALHPHGDAPIVEALVVLA----NKGFLIETQGNFGNPLTGDPHAAARYIEARLSPL 114 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 ++ +L + ++DG QEP +L A++P +LL+G GIAVGM T I PHN ++ Sbjct: 115 AKEVL--FNTDLMTFHDSYDGREQEPDILAAKIPLLLLHGVDGIAVGMTTKIFPHNFCDL 172 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK-K 247 +A IA+++ +L PD+P + S Y++G GS+ +RA Sbjct: 173 LEAQIAILNDQPFSLL--------PDFPPGGTMDASD------YQDGLGSIVLRATIDII 218 Query: 248 EDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVD 307 D ++I + + ++ I + + +D ++D S + P + +P+ + Sbjct: 219 NDKTLLIKEICPSTTTETLIRSIENAAKRGIIK-IDSIQDFST-DLPHIEIKLPK--GIY 274 Query: 308 MDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILS-------EWLVFRRDTVRR 360 ++ L+ T+ + I G+P + EIL +L + Sbjct: 275 AKDLLRPLYTHTECQVILTSRPTAI-YQGKPWETTISEILRLQTKTLQNYLKKELLILED 333 Query: 361 RLNYRL-EKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMS-------RFGLTET 412 L+ L K L+ L I L ++ + + A++ + Sbjct: 334 SLSRELYHKTLEYLFIKHKLYDTVRSMLSKRKTSPSSSAIHNAVLEALTPFLDTLPAPDK 393 Query: 413 QAEA-ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQA 471 QA A + L ++ + +E E + LEK+R +Q L+ +K L K+L + Sbjct: 394 QATAQLAALTIKKILCFDENSYEKELACLEKKRSSVQKDLSQLKKYTVLYIKKLLETYRQ 453 Query: 472 YGDDRRSPLQEREE 485 G R++ + + ++ Sbjct: 454 LGH-RKTKIAKFDD 466 >UniRef50_P34534 Putative DNA topoisomerase 2, mitochondrial n=5 Tax=Caenorhabditis RepID=TOP2M_CAEEL Length = 1054 Score = 329 bits (844), Expect = 2e-88, Method: Composition-based stats. Identities = 102/498 (20%), Positives = 199/498 (39%), Gaps = 42/498 (8%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSE-LGLNASAKF 60 D ++ EF + + + M V + R++P + DGLKP QR+I++ + + + K Sbjct: 578 DDGKTEISYQEFVDGQLMQFGM-VDLKRSIPSLIDGLKPSQRKILWTLLNNMDESTEIKV 636 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPD-DPKSFAA 117 + A V YH HG+ + ++ M Q F S PL+ G +G A+ Sbjct: 637 SQLAGAVAHRQS-YH-HGEESLVRTIIRMGQTFCGSSNLPLLQPIGQFGTRHEGGNDAAS 694 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY + L+ + LL + +G + EP L +P IL+NGT GI G + Sbjct: 695 ARYIFTALAPTTRLLFPQADDDLLQ-KNVEEGMVVEPTWLCPIVPLILINGTEGIGTGWS 753 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQ-GPDYPTEAEIITSRAEIRKIYENGR 236 T I N ++ ID ++ +I ++ + E++T I Sbjct: 754 TKIANRNPIDIIDMIRRKID----SISTEYEIPPFYEEFRGKLEVVTPTKFI------SS 803 Query: 237 GSVRMRAVWKKEDGA--VVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENP 294 G +++ +K + I LP + ++ E+++ + LP+++ ++ Sbjct: 804 GKIQLIRPERKNASTFSIEIVELPIGIWTSKYKEKLSKIVE--TLPVLEFSERHTEKRVH 861 Query: 295 TRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK-NLLEILSEWLVF 353 R+ + + + + + + L L S N + +G N+ EI +E+ Sbjct: 862 FRITLDRKKSSRFLQKSNSDLLNYFKLRTSLTENRVLFDRNGELKEFGNISEIAAEFFEV 921 Query: 354 RRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRN--EDEPKPALMS-RFGLT 410 RRD +RL + E+ +L +E L + IR+ ++ + L F + Sbjct: 922 RRDLYEKRLKIQKEECEAKLIYVENQLNFIEMVTNGTIEIRSMGRNQLEEKLQEMGFRVD 981 Query: 411 E----------TQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNL 460 +LE+ + L E ++ +S E + + ++ Sbjct: 982 PMATIAKNSKKANYGYLLEMPVSRLTSDEMKRLEERKSRRRTELEAAES-----ADWKSV 1036 Query: 461 LKKELQADAQAYGDDRRS 478 + EL A+A G++R+S Sbjct: 1037 WRSELDKLAEAVGNNRKS 1054 >UniRef50_Q04PE8 DNA topoisomerase (ATP-hydrolyzing), subunit A n=6 Tax=Leptospira RepID=Q04PE8_LEPBJ Length = 462 Score = 327 bits (839), Expect = 8e-88, Method: Composition-based stats. Identities = 114/475 (24%), Positives = 203/475 (42%), Gaps = 29/475 (6%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + D + + + YS YV RA+P DGLKPVQRRI++AM +A ++ Sbjct: 9 LKDSFPKRPFEDQVNDDQRKYSRYVCDSRAIPHEIDGLKPVQRRILWAMW--NSDARNRY 66 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFS--YRYPLVDGQGNWGAPDDPKSFAAM 118 K+ + G +G YHPHGD + +A+ MAQ F+ PLV G+G +G DP + A+ Sbjct: 67 TKTVKVAGLAMG-YHPHGDKSIQDALSQMAQDFTFANNIPLVSGEGTFGDVLDPSAIASP 125 Query: 119 RYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMAT 178 RYTE +LS + + L D+V N+D T EP ++P +LLN GIA G Sbjct: 126 RYTEVKLSDFVKDLGFFESLPDIDYVKNYDETEDEPIHFVGKVPIVLLNNIQGIATGFRC 185 Query: 179 DIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGS 238 IP H L ++ ++ I + K L + D+ E ++ + E G + Sbjct: 186 FIPGHRLADIVKSQINYLKTKKP--LSLKPWYK--DFNGEVKMAET--------ETGNIT 233 Query: 239 VRMRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 + +K E + ++ P + +V+ + + +K + + D S R+ Sbjct: 234 MSTTFAFKWEGDILYLTDSPMNWNREKVISLLDDIL-ERKDSWLKEYVDYSSQT--FRIE 290 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + + + + LF D++ + +N+I DG+ EI+ + FR+ + Sbjct: 291 LQYKKGEKPSQKEIMALFNKEDIQT---LAMNVITYDGKLKNFKPEEIIKRFCDFRKTHL 347 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNI--DEVIEIIRNEDEPKPALMSRFGLTETQAEA 416 RR +++ L+ ++VI I +D S+F E Sbjct: 348 IRRFKRLSGLEEEKIERNSELIRFIKEKWNEKVIGIKSKKDFEDKLKASKFKYFEW---- 403 Query: 417 ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQA 471 + + + + E K E + + QG++ ++K+ + + EL Sbjct: 404 LSTIPVYRMTIEEVKKCEEAIIEAKTTLARYQGLVKEDKKLTDYMITELNELQNK 458 >UniRef50_A0BK44 Chromosome undetermined scaffold_111, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0BK44_PARTE Length = 1196 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 89/525 (16%), Positives = 188/525 (35%), Gaps = 60/525 (11%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + + F + +S+ + R++P DGLKP QR+I++ + K Sbjct: 338 LDYSKPNVRYRNFVTDCLAMHSISDNL-RSIPSSIDGLKPTQRKIIHTLLNHS-KQEYKV 395 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAA 117 + V +YH HG+ + + +V MAQ F S L+ G +G K A Sbjct: 396 SSLSGLV-TTYAQYH-HGEQSLQQTVVAMAQNFTGSNNINLLLPIGQFGTRSMGGKDAAQ 453 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY ++LS + L +E T +++ +G EP LP +L+NG GI G + Sbjct: 454 ARYISTKLSSLTTKLFNEDDLHTLNYLDE-EGYTVEPFWFTPILPLVLINGAEGIGTGWS 512 Query: 178 TDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRG 237 T +P N RE+ Q + + ++L+ +G G Sbjct: 513 TQVPNFNPREICQQIKRKLRGEEF--EELVPWYKG---------------FTGSITAGTN 555 Query: 238 SVRMRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRL 297 + + + + I+ +P + S I ++M + ++ D ++ ++ Sbjct: 556 QYIAKGSFIQHKNHLYITEIPPKKSVKEYQAFIQSKMEVAEGKSEPEILDMKEYHAGNKV 615 Query: 298 VIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRP---AVKNLLEILSEWLVFR 354 + V + + + L+ + + N++ + + N+ EIL E+ R Sbjct: 616 CFELK---VTDEVLKQDIEKYFKLQTTIAM-TNLVLFNEKGLLKRYSNVSEILDEFYQTR 671 Query: 355 RDTVRRRLNYRLEKVLKRLHILEGLLVAFL-NIDEVIEIIRNEDEPKPALMSRFGL---- 409 + R Y L K L +++ ID I++ + + G Sbjct: 672 IKFYQLRKEYLLSKYQNELELVQSKSKFIEGMIDNSIQLRGLKKMEMCKKLQSLGFKGIS 731 Query: 410 ------------------TETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451 E Q + +L + + + ++ + + + +L+ + L Sbjct: 732 KMEKVKSTRISKDFDADNLEKQYDYLLSMPMWNFSEEKITAFKQQIKQLQDQITAL---- 787 Query: 452 ASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLP 496 +++ + ++L + QE + + +L Sbjct: 788 -NKKTPQQIWSEDLDEFLEELTKVEEQETQEMIKRVEKNAEKLLK 831 >UniRef50_D2XAH7 DNA topoisomerase II n=1 Tax=Marseillevirus RepID=D2XAH7_9VIRU Length = 1089 Score = 323 bits (827), Expect = 2e-86, Method: Composition-based stats. Identities = 92/478 (19%), Positives = 182/478 (38%), Gaps = 43/478 (8%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 L+L +F + Y R++P + DGLKP QR+++YA + K K R Sbjct: 645 ELSLSDFIDKRLSTYHRANN-RRSIPSVFDGLKPSQRKVLYACFSSNIIGKNKKKHVDRL 703 Query: 67 VGDVLG-KYHPHGDSACYEAMVLMAQPF---SYRYPLVDGQGNWGAPD-DPKSFAAMRYT 121 G+V + HG+ + E ++ MAQ F L++ G++G K +A RY Sbjct: 704 TGEVASVAGYHHGEKSLTETIIGMAQDFVGCGNNVRLLNPDGSFGTRLRGGKDHSASRYL 763 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 S + K + ++ + V D EP +P I++NG GI G +T+IP Sbjct: 764 SSFVEKIARVVFPPEDDDLYEKVFE-DNEYNEPINYIPIIPLIVVNGACGIGTGHSTEIP 822 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRM 241 PHN EV + + +L +G + TE E + + + Sbjct: 823 PHNPLEVCHWIRCWL--EEQETPKLSPWWKGFNGTTEVEEDKVK------------TFGV 868 Query: 242 RAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 K +V P + + + + K + +D +D + + Sbjct: 869 LEKMSKTKWKIV--ETPVGLWTYDCKKHLESLETQKHIKSFEDK--YTDEKASFII---- 920 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRI-NLNMIGLDGRP-AVKNLLEILSEWLVFRRDTVR 359 + D + +L L ++ + N+ + P + +IL ++ R + Sbjct: 921 -NTTKDFIPTIKNL----KLSTTFSLRNMTALDEKDNPVKFSTVDDILLKYCPERLRLYQ 975 Query: 360 RRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQ--AEAI 417 +R + L + + + ++ + I ++ ++E M + + + Sbjct: 976 KRKDKMLADLSQEILKQANKQRFLKDVLDGILEMKQQEELLLQKMEDMAYDKWNGSYDYL 1035 Query: 418 LELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDD 475 + + +R L K ++ +L+++ +L SER + K EL+ + Y D Sbjct: 1036 IGMPIRTLTKGRLREVGEILRKLKEKHAEL-----SERTPKEMWKSELEVFEKKYKRD 1088 >UniRef50_Q9QSK1 DNA topoisomerase 2 n=1 Tax=Invertebrate iridescent virus 6 RepID=TOP2_IIV6 Length = 1132 Score = 322 bits (826), Expect = 3e-86, Method: Composition-based stats. Identities = 83/474 (17%), Positives = 170/474 (35%), Gaps = 46/474 (9%) Query: 3 DMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKK 62 + +L + F + +S+ R+LP + DGLK QR++++ + + + K + Sbjct: 686 NKILQLNISTFINEELIKFSIED-CKRSLPHLIDGLKESQRKVIFGLKQWNGKNNIKVAQ 744 Query: 63 SARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPD-DPKSFAAMR 119 V + HG+ ++ ++ MAQ F + PL++ G +G K A+ R Sbjct: 745 LGAFVAQKTD--YKHGEQNLFDTIIKMAQTFVGANNIPLLEEDGQFGTRLSGGKDAASPR 802 Query: 120 YTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATD 179 Y + ++ DG EP +P I +NG+ G+ G + + Sbjct: 803 YIFVNQPPILNKIFRPEDDPILNY--TLDG---EPVFYAPVIPLICINGSVGVGTGFSCN 857 Query: 180 IPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSV 239 IP N E+ I+ + + + KI +NG G Sbjct: 858 IPMFNPSEIIDGLKQWINMREQGEKYVFKYKP-----------WYKGFTGKIEKNGSGRY 906 Query: 240 RMRAVWKKEDG-----AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENP 294 E +S LP + + E + + D+ + + Sbjct: 907 ISYGTLSNEASNNGMYQYTVSELPINMWTDKFKEMCDQYRESNLIKTCDNYSEVTTVNFK 966 Query: 295 TRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRI-NLNMIGLDGRP-AVKNLLEILSEWLV 352 + + + +L L N+ M +G+ + L I+ + Sbjct: 967 I---------SSEHELTIENL----KLRSYIHTSNMVMFDHEGKIHKYETLNGIMQRFCK 1013 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLN-IDEVIEIIRNEDEP---KPALMSRFG 408 R +R Y L+K+ K L I E + +++ I+I+ EDE + M+ + Sbjct: 1014 ERIKIYEKRRQYMLQKLNKSLTISENKKRFMEDVMNQKIKILLQEDEVVHQQLLDMNYYK 1073 Query: 409 LTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLK 462 E + + +L + + K K+ + +L+K+ + + ++L+ Sbjct: 1074 DDEGEFDYLLNMNIGGFRKKNVDKLISKIDDLKKDIMWYTNTNEGQMWLKDILE 1127 >UniRef50_A8Q6X4 DNA topoisomerase 2 n=1 Tax=Brugia malayi RepID=A8Q6X4_BRUMA Length = 1178 Score = 322 bits (826), Expect = 3e-86, Method: Composition-based stats. Identities = 101/472 (21%), Positives = 173/472 (36%), Gaps = 51/472 (10%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 + EF + YS + R+LP + DGLKP QR++++ M + + A Sbjct: 715 QKTFSEFVNEELVEYSQLD-LRRSLPNVVDGLKPSQRKVLFTMFGRYERGEIRVSQLAGA 773 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPD-DPKSFAAMRYTES 123 V G YH HG+ + +V +AQ F S L+ G +G + A+ RY + Sbjct: 774 VSQYCG-YH-HGEESLVNTIVRLAQDFVGSNNLNLLLPLGQFGTRLSGGEDVASARYIYT 831 Query: 124 RLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPH 183 LS + + + + L EP+ +P IL+NG GI G AT I P Sbjct: 832 SLSPLARAIFPHPDDKVLKNLVE-ENALVEPEWYCPIIPMILINGAEGIGTGWATKILPR 890 Query: 184 NLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRA 243 R+V A LID P + I YE + Sbjct: 891 CPRQVISNAQRLIDGRPLQD-------MLPHFRKFQGTI---------YETAPRQYSISG 934 Query: 244 VWK----KEDGAVVISALPHQVSGARVLEQ-IAAQMRNKKLPMVDDLRDESDHENPTRLV 298 K +I+ LP + + E+ + + ++N + ++L ES+ ++ Sbjct: 935 KVSYRRLKSGLRAIITELPTGIWNNKYKEKVLDSAIKNGIISNYEELHTESNVHFILHVI 994 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR---PAVKNLLEILSEWLVFRR 355 P + + +N L L N MI D + + EI E+ RR Sbjct: 995 DKPLLSDKKQIKALNRLLK---LRSVASENS-MILFDEKNVLQKYDSTREIFQEFFEVRR 1050 Query: 356 DTVRRRLNYRLEKVLKRLHILEGLLVAFLNI--DEVIEIIRNEDEPKPALMSR-FGLTET 412 R L + +L +E + I E+I +N E L + F Sbjct: 1051 QKYIERRECELVIMEGKLKFIENQVRFVNAIINGEIIIKKKNRAEIIAQLAEKGFDSNPM 1110 Query: 413 QAE-------------AILELKLRHLAKLEEMKIRGEQSELEKERDQLQGIL 451 +A+ +L++ L L+ E + ++ ++S+L + L+ Sbjct: 1111 KAKNATDGNCNPPDFAYLLDMPLCRLSNEEILVLQEKRSQLWERFKSLKSTT 1162 >UniRef50_Q0QCM0 GyrA (Fragment) n=297 Tax=Bacteria RepID=Q0QCM0_ECOLX Length = 211 Score = 321 bits (824), Expect = 5e-86, Method: Composition-based stats. Identities = 108/209 (51%), Positives = 154/209 (73%), Gaps = 1/209 (0%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 ++ + + E +++YL+Y+M VI+ RALP + DGLKPV RR++YAM+ LG + + + Sbjct: 4 LAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAY 63 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRY 120 KKSAR VGDV+GKYHPHGD A Y+ +V MAQPFS RY LVDGQGN+G+ D S AAMRY Sbjct: 64 KKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDG-DSAAAMRY 122 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 TE RL+K + L+++L + T D+V N+DGT + P ++P ++PN+L+NG++GIAVGMAT+I Sbjct: 123 TEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNI 182 Query: 181 PPHNLREVAQAAIALIDQPKTTLDQLLDI 209 PPHNL EV +A ID +++ L++ Sbjct: 183 PPHNLTEVINGCLAYIDDEDISIEGLMEH 211 >UniRef50_C4R475 DNA topoisomerase 2 n=1 Tax=Pichia pastoris GS115 RepID=C4R475_PICPG Length = 1344 Score = 320 bits (821), Expect = 1e-85, Method: Composition-based stats. Identities = 92/553 (16%), Positives = 189/553 (34%), Gaps = 122/553 (22%) Query: 8 LALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTV 67 + + +F + +SM + R++P + DG KP QR+I+Y + L + K + A + Sbjct: 720 IPISDFINKELILFSMADNI-RSIPSMLDGFKPSQRKILYGCYKRNLRSEIKVSQLAGYI 778 Query: 68 GDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRYTESR 124 G+ YH HGD + ++++ +AQ F S L+ G +G+ K +A RY + Sbjct: 779 GE-HSAYH-HGDQSLIQSIIGLAQDFVGSNNLNLLQPIGGFGSRAQGGKDASAARYIFTD 836 Query: 125 LSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHN 184 LSK ++ S GI G +T+IPP N Sbjct: 837 LSKITKKNFS----------------------------------CQGIGTGWSTNIPPFN 862 Query: 185 LREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAV 244 ++ L+D + ++++ +G I KI + RM Sbjct: 863 PVDIVANIRRLMDGQEM--EEMIPWYRG-----------WNGSITKISAD---KFRMEGN 906 Query: 245 WK-KEDGAVVISALPHQVSGARVLEQIAAQM--RNKKLPMVDDLRDESDHENPTRLVIVP 301 + +D + I+ +P + + E + + K+ + D+ ++ + + + Sbjct: 907 IEQIDDETIEITEIPAKTWTINMKEFLLNGIAGSEKQKSWIKDMEEQHGMDLKFVITLTK 966 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVK---NLLEILSEWLVFRRDTV 358 + + L L + + NM+ D +K N+ EI+ ++ R D Sbjct: 967 EEMKKSLQM---GLKERFKLITTINV-GNMVAFDAAGKIKKYDNVNEIIEDYYHVRLDFY 1022 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK-PALMSRFGLTE------ 411 +RR ++ E + +L + I E + N + + R + Sbjct: 1023 QRRKDHLAEVLGNQLEKISSQARFVKMIIENELRVNNRKRIELIEELQRLNFPKFSKDGK 1082 Query: 412 ---------------------------------------TQAEAILELKLRHLAKLEEMK 432 + +L + + L + K Sbjct: 1083 PIWQQVDQEEITEAEIKVEEEEEEEIDDENLLNKSVNIFASYDYLLGMPIWSLTRERYHK 1142 Query: 433 IRGEQSELEKERDQLQGILASERKMNNL------LKKELQADAQAYGDDRRSPLQEREEA 486 + +++E E + +L + A + +L L+ D + R S ++ A Sbjct: 1143 LLLQKAEKEDQLTELLKLSAKQIWNKDLEVFLEEWHAFLKEDEEK----RASSFKKSGPA 1198 Query: 487 KAMSEHDMLPSEP 499 + E Sbjct: 1199 AKKKRVRRVKKEN 1211 >UniRef50_Q55BP5 Probable DNA topoisomerase 2 n=1 Tax=Dictyostelium discoideum RepID=TOP2_DICDI Length = 1521 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 105/635 (16%), Positives = 199/635 (31%), Gaps = 140/635 (22%) Query: 4 MAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKS 63 ++L +F + +S+ +R++P I DGLK R+ +Y+ + L K + Sbjct: 745 GVKKLTYSDFINKELVLFSIAD-CERSIPNIVDGLKTSHRKTLYSCFKRNLKKEIKVAQL 803 Query: 64 ARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAP-DDPKSFAAMRY 120 V + YH HG+++ Y +V MAQ F S L++ G++G K ++ RY Sbjct: 804 IGYVSE-HSAYH-HGEASLYSTIVGMAQEFVGSNNINLLNPAGSYGTRIAGGKDCSSARY 861 Query: 121 TESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDI 180 +RL+ + + V + DG +PK +P IL+NG GI G ++ I Sbjct: 862 IHTRLNDIARAVYHADDDPILSCVVD-DGKKVQPKFYIPVIPMILVNGCVGIGTGWSSTI 920 Query: 181 PPHNLREVAQAAIALIDQPKTT-LDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSV 239 P +N R++ Q ID + G + + G Sbjct: 921 PNYNPRDLIQNMRLAIDGKPLKPIKPWYRGFLGSIEANQGSKVQG------------GQY 968 Query: 240 RMRAVW-KKEDGAVVISALPHQVSGARVLEQIAAQ------------------------- 273 + +W K D I+ LP E + Sbjct: 969 LSKGIWKKLSDNRFEITELPIGFWTQDYRELLDELETPGTRKKKKEEKEKKAASRKGTKA 1028 Query: 274 -----MRNKKLP-----------MVDDLRDESDHENPTRLVIVPRS-NRVDMDQVMNHLF 316 R+K++ V + S ++ + + +++++V Sbjct: 1029 KPTTTKRSKRVDDDDDNEKVTEATVKSYTNYSSESTIHFIIDTIQPVDEINIEKV----- 1083 Query: 317 ATTDLEKSYR-INLNMIGLDGRPAVKNLLEILSE-WLVFRRDTVRRRLNYRLEKVLKRLH 374 L + N+ + +GR L E + R + R ++ E++ + Sbjct: 1084 --FKLVSTINETNMVVFDEEGRIQRFATTTALQEHFFPLRIKHYQMRKDFLSERLSEEYS 1141 Query: 375 ILEGLLVAFLNI------------------------DEVIEIIRNEDEPKPALMSRFGLT 410 L L + D +I N+ + Sbjct: 1142 RLSNKARFILAVVNKELVISNVKKVDLINKLKEMKFDRIINKNSNKSARDKIKKKKNAFD 1201 Query: 411 ETQA----------------------EAILELKLRHLAKLEEMKIRGEQSELEKE----- 443 E A + +L L L L K+ E+ +KE Sbjct: 1202 EEDAAISSDEEKDGAQEEQDDDTKGYDYLLSLPLWSLTLERVKKLIEERDSKKKEWDILL 1261 Query: 444 -----------RDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEH 492 D L+ L + + LK + ++ + R+ + AK +S Sbjct: 1262 STPIQEIYKRDLDALEKALDDQDAYDESLKNQTESLKK------RTKTKALPRAKKISAK 1315 Query: 493 DMLPSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKA 527 + ++ + V+ D + G K Sbjct: 1316 VVKDTKEAPLTKLVKPTVKIPTTTDSNVSGSKRKK 1350 >UniRef50_Q252N7 DNA gyrase subunit A n=9 Tax=Chlamydiales RepID=Q252N7_CHLFF Length = 479 Score = 318 bits (815), Expect = 5e-85, Method: Composition-based stats. Identities = 118/502 (23%), Positives = 224/502 (44%), Gaps = 56/502 (11%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 + + + +++Y+ YVI++RA+P I DGLKPVQRR+++ + + K K A G Sbjct: 3 DVSDLFKTHFMHYASYVILERAIPHILDGLKPVQRRLLWTLFRMD---DGKMHKVANIAG 59 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 + HPHGD+ EA+V++A + L+D QGN+G P AA RY E+RLS Sbjct: 60 RTM-ALHPHGDAPIVEALVVLA----NKGYLIDTQGNFGNPLTGDPHAAARYIEARLSPL 114 Query: 129 SELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREV 188 ++ +L + ++DG +EP +LPA+LP +LL+G GIAVGM T I PHNL E+ Sbjct: 115 AKDIL--FNTDLMSFHDSYDGREKEPDILPAKLPLLLLHGVEGIAVGMTTKIFPHNLYEL 172 Query: 189 AQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKE 248 +A IA+++ TL PD+ + + S Y++G GS+ +RA + Sbjct: 173 IEAQIAILNNRTFTLL--------PDFYSGGVMDASE------YQDGLGSITIRASIQIV 218 Query: 249 D-GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVD 307 D ++I + + ++ I + + +D ++D S + + + + Sbjct: 219 DSKTLIIKEICPSTTTETLIRSIENAAKRGVIK-IDSIQDFSTDQPH---IEIKLPKGIY 274 Query: 308 MDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLE 367 ++ LF T+ + I + +P ++ EIL +++ L + Sbjct: 275 AKDILEPLFQYTECQVVLTSKPTAI-YNNKPVETSISEILKLHTEALEGYLQKELQILHD 333 Query: 368 KVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTE---------------- 411 ++ + + + + + +I+R +S+ L E Sbjct: 334 ELAQEHYYKSLEYIFIKH--RLYDIVRELLSKLGNKVSQEDLHEAVLASLAPFISSLPEA 391 Query: 412 --TQAEA-ILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 468 QA + + L ++ + E + ++K++ ++ L++ +K K L+ Sbjct: 392 PCKQATSQLASLAIKKILCFNETSYTKDLEGIKKKQTAVKKDLSNMKKFT---IKYLKGL 448 Query: 469 AQAYGD--DRRSPLQEREEAKA 488 YG+ R++ + K Sbjct: 449 LAKYGELGKRKTQILSFSNQKK 470 >UniRef50_Q8HFR9 DNA topoisomerase 2 n=1 Tax=Bodo saltans RepID=Q8HFR9_9EUGL Length = 1247 Score = 317 bits (813), Expect = 1e-84, Method: Composition-based stats. Identities = 82/489 (16%), Positives = 177/489 (36%), Gaps = 38/489 (7%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASA-K 59 + + L + F + ++++ + RALP DGLKP QR+I+++ G + K Sbjct: 666 LDRRQKMLTIPTFVDKELIHFANAGNL-RALPSAVDGLKPSQRKILWSCFRRGNANESLK 724 Query: 60 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPDD-PKSFA 116 + + + +V +H HG+ + + ++ MAQ + S L++ +G +G+ A Sbjct: 725 VSQLSGYISEV-SAFH-HGEMSLQQTIIKMAQDYVGSNNINLLEPEGQFGSRQHLGSDHA 782 Query: 117 AMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGM 176 A RY ++LS + L+ + +V + +G EP+ +P +L+NG+ GI G Sbjct: 783 AARYIFTKLSPLARLIFPKEDDELLQFVED-EGKYVEPRFYVPIIPMLLVNGSVGIGFGF 841 Query: 177 ATDIPPHNLREVAQAAIALIDQ--PKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYEN 234 A + H+ +V ++ + P L+ L G + + Sbjct: 842 ACTVQMHHPLDVVTVVRRMMRKNTPTQALEGLRPWAVGYSGSVVQKTTVDEEGREVVSTT 901 Query: 235 --GRGSVRMRAVWKKEDGAVV-ISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDH 291 G R K + VV + LP + ++ ++A K+ + D S Sbjct: 902 HVAMGRFTTR---KVKGFPVVRVEELPWDRAIEQLRGRVAKLAEESKVLRIA---DYSGA 955 Query: 292 ENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGR----PAVKNLLEIL 347 + V++ + ++ + + N + P +++ I+ Sbjct: 956 NHVDSDVVLAADSFASPREIEKDFLL------TSNVANNAAVYNPEMVLSPLGESVESIV 1009 Query: 348 SEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKP--ALMS 405 R +R +L + +L L+ L + R + S Sbjct: 1010 QWHYEQRLAMYTKRKERQLLLLNTQLKKLKSTLTFTETLRSGDLDFRKMADENALVKQCS 1069 Query: 406 RFGLTETQ--AEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKK 463 L + + + + K++ + + L+ + L + Sbjct: 1070 ELKLHRENDSFDYLTRRPVTYFTNNNVEKLKRDIEHCKSSIKSLES-----KSEVELWET 1124 Query: 464 ELQADAQAY 472 +L A +A+ Sbjct: 1125 DLAAFEKAF 1133 >UniRef50_Q6RCM1 DNA topoisomerase 2 n=2 Tax=Trichomonas vaginalis RepID=Q6RCM1_TRIVA Length = 1458 Score = 317 bits (812), Expect = 1e-84, Method: Composition-based stats. Identities = 85/589 (14%), Positives = 189/589 (32%), Gaps = 115/589 (19%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 + + +F + + +S Y RA+P DG KP QR+I++ + + K Sbjct: 663 LGTKDTHIKYSDFVDKELILFSSYANY-RAIPSSIDGWKPGQRKILWVCLKNNIKNDLKV 721 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPD-DPKSFAA 117 + + V + YH HG+++ E ++ M Q F S + G G + + Sbjct: 722 AQLSGKVSE-QAAYH-HGEASLNETIIGMCQDFVGSNNINVFQPIGMLGTRLAGGEDSGS 779 Query: 118 MRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMA 177 RY + L K + + + + +G EP +P +L+NG GI VG + Sbjct: 780 PRYVYTALEKITRTIFMKEDDDLLTY-NTDEGLPIEPVTYIPIIPMVLVNGAKGIGVGWS 838 Query: 178 TDIPPHNLREVAQAAIALIDQPKT-TLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR 236 +++P + +++ ++ + G P + + I K R Sbjct: 839 SEVPQYCPQDIIDNLRRKMNDEPMVEMTPWYSGFTGKIIPIQVIKDGVKQPIVKW--ESR 896 Query: 237 GSVRMRAVWKKEDGAVVISALPHQVSGARVLEQIAAQ----------------------- 273 G V+ K +D + I+ + + + + Sbjct: 897 GIVK-----KIDDTTIEITEFTNGIWTYDYKKFLEGLTVGESLNPHKKLADRKAAAAKAK 951 Query: 274 -----------------MRNKKLPM---VDDLRDESDHENPTRLVIVPRSNRVDMDQVMN 313 + K + + R+ + + ++ V S +++ V Sbjct: 952 RTKKKAAAGDDPVEQADVEEKVNLGGPKISEFREYHTNVSVHFIITVDDSQMREIESV-- 1009 Query: 314 HLFATTDLEKSYR-INLNMIGLDGRPAVKN-LLEILSEWLVFRRDTVRRRLNYRLEKVLK 371 L L+ S N+ + + N L+I++++ R R Y ++ + Sbjct: 1010 GLREFFKLKSSITATNMTLFNAQNKIVQFNSPLDIINDYYPVRMKYYEERHRYLIDALQL 1069 Query: 372 RLHILEGLLVAFLNIDEVIEIIRNEDEP---------------KPALMSRFGLTETQ--- 413 + L + I + L R + Sbjct: 1070 QYKKLSNQARFIREVIAGIIKVNGVPRATILAALERGNYDLYDDKELTKRIKFADEVIQQ 1129 Query: 414 --------------------------AEAILELKLRHLAKLEEMKIRGEQSELEKERDQL 447 + +L +K+ L K + K+ E + +E +++ Sbjct: 1130 HNEEEEEQNEFKSESNADHLALLEKGYDYLLAMKIWTLTKEKADKLDDEAKKKNQELEEM 1189 Query: 448 QGILASERKMNNLLKKELQADA---QAYGDDR-RSPLQEREEAKAMSEH 492 +K + K++L +A+ R ++ L+ +A+ ++ Sbjct: 1190 LK-----KKPIDFYKEDLDKFEVEWKAFEAKREKTRLENVADAEKVNRK 1233 >UniRef50_B2ZYK7 Type IIA topoisomerase n=1 Tax=Ralstonia phage RSL1 RepID=B2ZYK7_9CAUD Length = 514 Score = 315 bits (808), Expect = 4e-84, Method: Composition-based stats. Identities = 137/499 (27%), Positives = 230/499 (46%), Gaps = 36/499 (7%) Query: 9 ALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVG 68 +L +F Y V +DR++P + DGLKPVQRRI+++ S++ +F+KSAR G Sbjct: 25 SLKDFGRRNMTIYGTTVNLDRSVPDLYDGLKPVQRRILWSASQV---CRTQFEKSARLTG 81 Query: 69 DVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLSKY 128 +G YHPHG+SA Y A V M Q S P + G+GN+G+ D AA RYT RLS Y Sbjct: 82 HCMGAYHPHGNSAIYSAAVNMVQHPS---PTLLGKGNFGSMTDG--AAAERYTNVRLSHY 136 Query: 129 SELLLSE--LGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 + + T +VPN+D EP LPA+LPN+LLNG GI VG+ T +P Sbjct: 137 GQTFFDSDYINAETTSFVPNYDDKDVEPVTLPAQLPNVLLNGGEGIGVGITTKLPTFTPE 196 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSV---RMRA 243 V + + K ++ + +++ S+ + + GS+ + A Sbjct: 197 SVLEVLNRMFKGEKLQAVDFAKTLKY-HHKWGGQLVRSKENQAQWKQMFVGSMANLQFEA 255 Query: 244 VWKKED--GAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVP 301 V + + IS+ P + ++++ A K S ++ P Sbjct: 256 VLDLDRDHKRMTISSWPPGTNLETFMKKVRAMPECHK-------CFNSKGTTTYQIECKP 308 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINLN---MIGLDGRPAV------KNLLEILSEWLV 352 N D+ + + T ++++IN+ +DG ++ +++ +W Sbjct: 309 GFNYDQFDKFVEKVRKATMQRQAFKINVTRREAKTVDGVTTFKTEFLALSVPDLILQWCR 368 Query: 353 FRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTET 412 R + L YR++K + + L+ A +D + + +R D P +L +T Sbjct: 369 MRVALELKSLAYRIKKQEAAIAYSKLLIYAVDKLDLIFKALRQSD-PDASLQKLLKITAE 427 Query: 413 QAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 472 QA+ IL+L++R L+KL++ K++G E+E QLQ A + L +L A QA Sbjct: 428 QAKQILDLQVRKLSKLDQSKLKGTLKTQEQELKQLQTWQAKPKAQVLL---DLAAVQQAL 484 Query: 473 GDDRRSPLQEREEAKAMSE 491 DR L+E + + + Sbjct: 485 DKDRNFKLKESTQKLTVCD 503 >UniRef50_Q5UQE6 DNA topoisomerase 2 n=3 Tax=root RepID=TOP2_MIMIV Length = 1263 Score = 312 bits (800), Expect = 3e-83, Method: Composition-based stats. Identities = 90/525 (17%), Positives = 175/525 (33%), Gaps = 96/525 (18%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGL-NASAK 59 + +R++ ++F + +S+ + R++P + DG KP R++ Y E + K Sbjct: 708 LDPSKKRISYYDFIHKELITFSV-DDVLRSVPNLMDGFKPSHRKVFYGSVEKNIYKQEIK 766 Query: 60 FKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPD-DPKSFA 116 V + + KYH HGD + +V MAQ + S L+ G +G+ K A Sbjct: 767 VSDLTGFVSN-MTKYH-HGDQSLSSTIVGMAQNYVGSNNLNLLMPLGMFGSRLTGGKDSA 824 Query: 117 AMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGM 176 + RY ++L ++ + + + D EP +P IL+NG GI G Sbjct: 825 SPRYLNTKLDDLAKKIFIDYDFDILQHQ-SEDNCRIEPVYYAPIIPMILVNGAEGIGTGY 883 Query: 177 ATDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR 236 +T I P N R++ L+ + P + I Sbjct: 884 STKIYPCNPRDIIANIKRLLTNENPKTMK-------PWFRHLTGTIEKIDG--------- 927 Query: 237 GSVRMRAVWK-KEDGAVVISALPHQVSGARVLEQIAAQM--------RNKK--------- 278 RA ++ + I+ LP + + + KK Sbjct: 928 AKYISRAKYEIIGKDTIHITDLPVGIWTDNYKAFLDNLIVQGTAQNAEEKKASKAVSSAK 987 Query: 279 -------------------------------------LPMVDDLRDESDHENPTRLVIVP 301 P+ ++ S+ R+ Sbjct: 988 NTKTTTKAGSKTGSRTRKNPALAKKSQKSVTAKVAKKNPVASSIKTYSEDCTDIRISFTI 1047 Query: 302 RSNRVDMDQVMNHLFATTDLEKSYRINL-NMIGLDGRPAVK---NLLEILSEWLVFRRDT 357 + +D ++ T L+ +NL NM + + +K IL ++ R + Sbjct: 1048 VFHPGKLDTLIKSGKLDTGLKLVKPLNLTNMHLFNEKGKIKKYDTYGAILRNFVKVRLNL 1107 Query: 358 VRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPKPAL-----MSRFGL--- 409 ++R +Y L K K + IL+ + + E +I + K + Sbjct: 1108 YQKRKDYLLGKWKKEMDILKWKVKFIEYVIEGKIVIFKNGKSKKKEEVLKALEDLKFPKF 1167 Query: 410 -----TETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQG 449 + I + L +L E K++ + ++ ++E L+ Sbjct: 1168 IVGNESYPSYGYITSIGLFNLTLEEVEKLKKQLADKKQELAILEA 1212 >UniRef50_D2TEU4 Putative DNA topoisomerase n=2 Tax=dsDNA viruses, no RNA stage RepID=D2TEU4_9VIRU Length = 1103 Score = 312 bits (799), Expect = 4e-83, Method: Composition-based stats. Identities = 90/498 (18%), Positives = 187/498 (37%), Gaps = 37/498 (7%) Query: 1 MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKF 60 ++ A+ + F + +++S Y + R++P + DG K QR++V+ AK Sbjct: 637 INYSAQSTTIERFIYDDLMHFSNYDNI-RSIPKMLDGQKAGQRKVVFYALNHVGKNEAKV 695 Query: 61 KKSARTVGDVLGKYHPHGDSACYEAMVLMAQPF--SYRYPLVDGQGNWGAPDDPKSFAAM 118 + A T V +YH HG+ + ++ MA + S+ PL+ G +G+ S AA Sbjct: 696 AQMAGTAAQVT-QYH-HGEVSLANTIIGMAATYTGSHNLPLLYPSGQFGSRHAKNSAAAP 753 Query: 119 RYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMAT 178 RY + +S + L+ + + + EP + +P +L+NG GI G Sbjct: 754 RYIFTHISSFLPRLIKSEDNDVLTYNVD-ENKKVEPTVYIPVIPIVLVNGANGIGTGWKC 812 Query: 179 DIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGS 238 D+P +N EV A + + + + + + G + ++ + I Sbjct: 813 DVPQYNPLEVIDACKRMANGGELSTSKWVPWYVGYN----GKMEETTDGFNSI------- 861 Query: 239 VRMRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 ++ + ++ LP + +E I + + +K +L +S V Sbjct: 862 ----GTYEVSGNTLTVTELPIGRATEDWIESIQSLIPDKIKNYEKNLGPDS--------V 909 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 + + +D + L +T L+ + N + +I+ E R Sbjct: 910 TIKLNLTSPIDDPVATLKLSTKLQTNRMWLYNA--KNKITHYAGPTQIIQEHARERLKLY 967 Query: 359 RRRLNYRLEKVLKRLHILEGLLV-AFLNIDEVIEI-IRNEDEPKPALMSRFGLTETQAEA 416 ++EK ++ +L + I+ I+I + L L + Sbjct: 968 EASRISQIEKASHKMDLLNNKIRYIMEFIEGKIKIGKMSTSSLNEYLAQNGYLRSNNSFR 1027 Query: 417 IL--ELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGD 474 L ++ L K+R + + + D L+ A++ + +L L+ + Y Sbjct: 1028 YLTDDISTGQLTTDNVDKLRNQIRNITTDIDALRETTANKMWITDL--NALRKEVDEYIV 1085 Query: 475 DRRSPLQEREEAKAMSEH 492 +R +PL E + Sbjct: 1086 ERLTPLDEDAPKPKKARK 1103 >UniRef50_UPI000194EBBC PREDICTED: similar to putative DNA gyrase subunit A; 1114-7603, partial n=1 Tax=Taeniopygia guttata RepID=UPI000194EBBC Length = 424 Score = 310 bits (795), Expect = 1e-82, Method: Composition-based stats. Identities = 120/440 (27%), Positives = 204/440 (46%), Gaps = 64/440 (14%) Query: 2 SDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFK 61 S+ R L ++ +L+Y+ YVI++RA+P I DGLKPVQRRI+++M L +F Sbjct: 39 SNDTIRHQLRGMYQSWFLDYASYVILERAVPNIEDGLKPVQRRILHSM---KLLDDGRFN 95 Query: 62 KSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYT 121 K A VG+ + ++HPHGD++ YEA+V + Q + LV+ QGNWG AA RY Sbjct: 96 KVANIVGNTM-QFHPHGDASIYEALVQLGQ----KELLVETQGNWGNTLTGAGAAAGRYI 150 Query: 122 ESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIP 181 E+RLS+++ D V N PK+ L GIAVG+++ I Sbjct: 151 EARLSQFA-----------LDVVYN-------PKVTEWTL------SAEGIAVGLSSKIL 186 Query: 182 PHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGR--GSV 239 PHN E+ AAI+ + TL PD+ T I SR Y +G G V Sbjct: 187 PHNFNEIIDAAISYLRGEPFTL--------YPDFFTGGSIDVSR------YNDGERGGVV 232 Query: 240 RMRAVWK-KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLV 298 ++RA + ++ + I+ +P+ + A ++E I K+ + + D + + Sbjct: 233 KIRAKIEKIDNKTLAITEIPYGKTTATLIESIVKAQEAGKIK-IRSVVDNTAQTANVIVY 291 Query: 299 IVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEWLVFRRDTV 358 ++P D+ ++ L+A TD E S N +I D +P + ++L + RD + Sbjct: 292 LLP---GTSSDKTIDALYAFTDCEVSVSPNCCVIS-DNKPHFIGVSDVLRHNVDRTRDIL 347 Query: 359 RRRLNYRLEKVLKRLHILEGLLVAFLNI---DEVIEIIRNEDEPKPALMSRFGLTETQAE 415 + L +L +V ++LH + D+ E N ++ + R E Sbjct: 348 GQELRIQLGEVREQLHFASLERIFIEERIYKDKGYEESENREQAIAHIRGRL-------E 400 Query: 416 AILELKLRHLAKLEEMKIRG 435 ++ +R + + +++ Sbjct: 401 KFKDIFIREVTDDDIIRLFE 420 >UniRef50_Q6WHM1 Topoisomerase II small subunit n=1 Tax=Vibrio phage KVP40 RepID=Q6WHM1_BPKV4 Length = 428 Score = 308 bits (790), Expect = 4e-82, Method: Composition-based stats. Identities = 97/457 (21%), Positives = 191/457 (41%), Gaps = 36/457 (7%) Query: 7 RLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSART 66 + L + L Y+MY I +RAL DGLKPVQR ++Y + + +AS F K A Sbjct: 2 QRTLSSIVNDEALEYAMYTIENRALANGIDGLKPVQRFVLYNVIK---DASTSFDKVAAL 58 Query: 67 VGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNWGAPDDPKSFAAMRYTESRLS 126 V + HG+++ +A+ LMA + P+V G+GN+G+ K A+ RY ++L Sbjct: 59 GSSVSKIGYNHGETSAQDALALMAAEWQNNVPIVQGRGNFGSRMV-KESASARYVYAKLH 117 Query: 127 KYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 186 +L ++ + D P+ LP IL+NG GIA G A +I PH+ Sbjct: 118 DNFDLYFKDIHLS----PEHKDLEHVPPQFYVPVLPMILMNGVQGIATGFACNILPHDPE 173 Query: 187 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWK 246 V +A + + + + +V+ P++ +I K+ N + Sbjct: 174 WVKKAVLEYLAGKEISE----PVVKFPEF---------YGKIEKLEHN---KYAQIGTVE 217 Query: 247 KEDGAVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRV 306 V++ +P A+ + ++ + K + DE+ R V R ++ Sbjct: 218 ISGLTAVVTEIPTGFDHAKYIIELDKLVEKGK---ISSYVDETSETFQFR-VRFKRGAKM 273 Query: 307 DMDQVMNHLFATTDLEKSYRINLNMIGLDGRPA-VKNLLEILSEWLVFRRDTVRRRLNYR 365 + V+ L L+ ++ N+N+I + + ++ E++ ++ FR + +R+ Sbjct: 274 TEESVIKTL----KLQSTFTQNINVIDENYQIRHFDDVRELVKWFVDFRMSFLPKRIQDS 329 Query: 366 LEKVLKRLHILEGLLVAFLNI--DEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLR 423 E+ KR + + + +I + E L + +E +L + + Sbjct: 330 TERTEKRASLAIAKVEFIKRVVSGTIILFGKKRAEVAAELKADEAFSE-HVTELLNMSVD 388 Query: 424 HLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNL 460 + E ++ + + +KE Q A + + ++ Sbjct: 389 KMTDDEIARLEKDATVAQKELSYWQKTTAQKEFIKDI 425 >UniRef50_D0HVU0 Topoisomerase IV subunit A n=3 Tax=Vibrio RepID=D0HVU0_VIBCH Length = 381 Score = 308 bits (790), Expect = 4e-82, Method: Composition-based stats. Identities = 227/381 (59%), Positives = 297/381 (77%), Gaps = 4/381 (1%) Query: 376 LEGLLVAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRG 435 ++GLL+A+LN+DEVIEIIRNED+PK LM+RF LT+ QA+AIL+ KLRHLAKLEEMKIRG Sbjct: 1 MQGLLIAYLNLDEVIEIIRNEDDPKAVLMARFDLTDIQADAILDTKLRHLAKLEEMKIRG 60 Query: 436 EQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDML 495 EQ ELEKER +L+ +L SER++NNLLKKE++ADA +GDDRRSPL EREEAKA++E D++ Sbjct: 61 EQDELEKERKKLEELLGSERRLNNLLKKEIKADADKFGDDRRSPLVEREEAKALTERDLM 120 Query: 496 PSEPVTIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAI 555 PSE +T+VLS+ GW+R AKGHD+D LNYKAGD++ GKSNQ VF+ S GRSY++ Sbjct: 121 PSEAITVVLSEKGWIRHAKGHDVDCQSLNYKAGDNYLTHACGKSNQQAVFLGSDGRSYSL 180 Query: 556 DPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARN 615 + TLPSARGQGEP+TG+L + G T+ ++M +DQ L+ SDAGYGFVC +DL+++N Sbjct: 181 ESHTLPSARGQGEPITGRLNVAEGTTIRQVVMGEEDQLWLVGSDAGYGFVCKGDDLLSKN 240 Query: 616 RAGKALITLPENAHVMPPVVIED-ASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINI 674 R+GKALI LPEN+ VM P VI D +D +LAIT GRML+FP+ DLPQLSKGKGNKIINI Sbjct: 241 RSGKALINLPENSEVMTPQVIADLDNDEILAITNQGRMLLFPIKDLPQLSKGKGNKIINI 300 Query: 675 PSAEAARGEDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRG-TLMRGLQR 733 P+A+A E+ L+ L VLP +++T++ GKRK+ L+ +L GERGRRG L RGLQR Sbjct: 301 PAAKAKTREEVLSNLMVLPQGASITLYAGKRKLGLKVSDLDNFRGERGRRGALLPRGLQR 360 Query: 734 IDRVEIDSP--RRASSGDSEE 752 + +EI++ ++ +E Sbjct: 361 VTAIEIETSAEPESTPHSEDE 381 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.148 0.401 Lambda K H 0.267 0.0456 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,527,983,525 Number of Sequences: 3077464 Number of extensions: 203677583 Number of successful extensions: 735128 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 813 Number of HSP's successfully gapped in prelim test: 1218 Number of HSP's that attempted gapping in prelim test: 721219 Number of HSP's gapped (non-prelim): 6466 length of query: 752 length of database: 1,040,396,356 effective HSP length: 137 effective length of query: 615 effective length of database: 618,783,788 effective search space: 380552029620 effective search space used: 380552029620 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 97 (41.8 bits)