BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (223 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P76340 Probable transcriptional regulatory protein yedW... 452 e-126 UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax... 256 5e-67 UniRef50_Q1R1E2 Two component heavy metal response transcription... 247 2e-64 UniRef50_A9AKM2 Two component heavy metal response transcription... 231 1e-59 UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax... 227 3e-58 UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=A... 218 2e-55 UniRef50_Q6AQP4 Probable two-component system response regulator... 209 7e-53 UniRef50_Q2SPE2 Response regulator consisting of a CheY-like rec... 201 1e-50 UniRef50_Q026B5 Two component heavy metal response transcription... 200 3e-50 UniRef50_A6SYV4 Heavy metal response regulator n=1 Tax=Janthinob... 198 1e-49 UniRef50_C9NWS1 DNA-binding heavy metal response regulator n=1 T... 194 3e-48 UniRef50_C4XS15 OmpR family two-component response regulator n=2... 193 3e-48 UniRef50_Q2JAC4 Two component transcriptional regulator, winged ... 190 3e-47 UniRef50_C7NAQ8 Two component transcriptional regulator, winged ... 187 2e-46 UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepI... 186 4e-46 UniRef50_A6CWR0 Two-component system response regulator (Pho fam... 186 5e-46 UniRef50_B5JD22 Response regulator receiver domain protein n=1 T... 185 7e-46 UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacter... 185 8e-46 UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax... 185 1e-45 UniRef50_B5JI66 Response regulator receiver domain protein n=1 T... 184 1e-45 UniRef50_B8DZ94 Two component transcriptional regulator, winged ... 183 3e-45 UniRef50_A5VEY8 Two component transcriptional regulator, winged ... 183 4e-45 UniRef50_B9XE94 Two component transcriptional regulator, winged ... 181 1e-44 UniRef50_C6LFE5 DNA-binding response regulator CsrR n=2 Tax=Firm... 181 1e-44 UniRef50_Q1IUY4 Two component transcriptional regulator, winged ... 181 2e-44 UniRef50_C1ABP4 OmpR family two-component response regulator n=2... 181 2e-44 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 180 3e-44 UniRef50_C8WRL2 Two component transcriptional regulator, winged ... 179 4e-44 UniRef50_D2QKB6 Two component transcriptional regulator, winged ... 179 6e-44 UniRef50_A9BP99 Two component transcriptional regulator, winged ... 179 9e-44 UniRef50_C0Z5X8 Two-component response regulator n=143 Tax=Firmi... 178 1e-43 UniRef50_C6QDD0 Two component transcriptional regulator, winged ... 177 2e-43 UniRef50_A9BRL1 Two component transcriptional regulator, winged ... 177 3e-43 UniRef50_B7QTW7 Two-component response regulator n=1 Tax=Ruegeri... 176 7e-43 UniRef50_C7LY45 Two component transcriptional regulator, winged ... 175 9e-43 UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C... 174 3e-42 UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteoba... 174 3e-42 UniRef50_A4AIS8 Two-component system, regulatory protein n=2 Tax... 173 4e-42 UniRef50_C7MLF5 Response regulator with CheY-like receiver domai... 173 4e-42 UniRef50_A6X2C4 Two component transcriptional regulator, winged ... 172 5e-42 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 172 7e-42 UniRef50_Q12T20 Two component transcriptional regulator, winged ... 172 8e-42 UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC... 172 8e-42 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 172 1e-41 UniRef50_A5FEG3 Two-component transcriptional regulator, winged ... 170 3e-41 UniRef50_A9GMJ5 Two-component response regulator n=3 Tax=Bacteri... 170 3e-41 UniRef50_D1B9J7 Two component transcriptional regulator, winged ... 170 4e-41 UniRef50_A5FCZ9 Two component transcriptional regulator, winged ... 170 4e-41 UniRef50_D1B4N2 Response regulator receiver n=1 Tax=Sulfurospiri... 169 4e-41 UniRef50_Q3B3K7 Two component transcriptional regulator, winged ... 169 4e-41 UniRef50_C6Q063 Two component transcriptional regulator, winged ... 169 6e-41 UniRef50_C6VUR1 Two component transcriptional regulator, winged ... 169 7e-41 UniRef50_A4CE30 Probable two-component response regulator transc... 169 7e-41 UniRef50_D2QPF4 Two component transcriptional regulator, winged ... 169 8e-41 UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleu... 169 9e-41 UniRef50_C7PAJ7 Two component transcriptional regulator, winged ... 169 9e-41 UniRef50_Q81I47 Two-component response regulator n=76 Tax=Firmic... 168 1e-40 UniRef50_B4DAQ3 Two component transcriptional regulator, winged ... 168 1e-40 UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax... 167 2e-40 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 167 2e-40 UniRef50_B4U9M6 Two component transcriptional regulator, winged ... 167 2e-40 UniRef50_A0LPJ2 Two component transcriptional regulator, winged ... 167 2e-40 UniRef50_A5FFW8 Two component transcriptional regulator, winged ... 167 3e-40 UniRef50_Q1AZL3 Two component transcriptional regulator, winged ... 166 4e-40 UniRef50_A6WIX6 Two component transcriptional regulator, winged ... 166 5e-40 UniRef50_A6M1X5 Two component transcriptional regulator, winged ... 166 5e-40 UniRef50_C7PP48 Two component transcriptional regulator, winged ... 166 6e-40 UniRef50_Q2SKY7 Response regulator consisting of a CheY-like rec... 166 6e-40 UniRef50_A6CDX9 Two component transcriptional regulator, winged ... 165 1e-39 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 165 1e-39 UniRef50_B1ZVS5 Two component transcriptional regulator, winged ... 164 2e-39 UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 T... 164 2e-39 UniRef50_B4WME0 Response regulator receiver domain protein n=1 T... 164 2e-39 UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepI... 164 2e-39 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 164 2e-39 UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Breviba... 164 2e-39 UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepI... 164 2e-39 UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desul... 164 2e-39 UniRef50_Q2NSR4 Putative two-component regulator protein n=1 Tax... 164 2e-39 UniRef50_UPI00017468BB two component transcriptional regulator, ... 164 3e-39 UniRef50_D2QX61 Two component transcriptional regulator, winged ... 163 3e-39 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 162 6e-39 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 162 6e-39 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 162 7e-39 UniRef50_Q47744 Regulatory protein vanRB n=13 Tax=Bacteria RepID... 162 9e-39 UniRef50_C6LI81 DNA-binding response regulator DltR n=2 Tax=Clos... 161 1e-38 UniRef50_D0KHV6 Two component transcriptional regulator, winged ... 161 1e-38 UniRef50_C1SIE7 Response regulator with CheY-like receiver domai... 161 2e-38 UniRef50_Q12PS6 Two component transcriptional regulator, winged ... 161 2e-38 UniRef50_B1ZS16 Two component transcriptional regulator, winged ... 161 2e-38 UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax... 160 2e-38 UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=... 160 2e-38 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 160 3e-38 UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteoba... 160 3e-38 UniRef50_Q8A9Y3 Two-component system response regulator n=8 Tax=... 160 3e-38 UniRef50_A0R7V0 Two component transcriptional regulator, winged ... 160 4e-38 UniRef50_A5WEA6 Two component transcriptional regulator, winged ... 160 4e-38 UniRef50_C0Z6J5 Two-component response regulator n=1 Tax=Breviba... 159 5e-38 UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID... 159 8e-38 UniRef50_UPI0001745DFF Response regulator consisting of a CheY-l... 159 9e-38 UniRef50_A5N1L7 Predicted transcriptional regulator n=8 Tax=Bact... 159 1e-37 UniRef50_C3QD36 Two-component system response regulator n=8 Tax=... 158 1e-37 UniRef50_A5FBX2 Two component transcriptional regulator, winged ... 158 1e-37 UniRef50_A1SID6 Two component transcriptional regulator, winged ... 158 1e-37 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 158 1e-37 UniRef50_B4WSE4 Response regulator receiver domain protein n=1 T... 158 1e-37 UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=B... 158 1e-37 UniRef50_C0Z6C7 Two-component response regulator n=3 Tax=Bacilla... 158 2e-37 UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID... 157 2e-37 UniRef50_C8WKQ8 Two component transcriptional regulator, winged ... 157 2e-37 UniRef50_Q1IVX4 Two component transcriptional regulator, winged ... 157 3e-37 UniRef50_Q01RB2 Two component transcriptional regulator, winged ... 157 3e-37 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 157 3e-37 UniRef50_C1ZD82 Response regulator with CheY-like receiver domai... 157 3e-37 UniRef50_B3EBC9 Two component transcriptional regulator, winged ... 156 4e-37 UniRef50_A5UWJ8 Two component transcriptional regulator, winged ... 156 4e-37 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 156 5e-37 UniRef50_Q6MHZ0 Two component response regulator n=1 Tax=Bdellov... 156 5e-37 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 156 5e-37 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 156 5e-37 UniRef50_Q3Z753 DNA-binding response regulator n=2 Tax=Dehalococ... 156 6e-37 UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaprot... 156 6e-37 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 156 6e-37 UniRef50_D2PLZ1 Two component transcriptional regulator, winged ... 155 7e-37 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_A9AVR8 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_C5CE19 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 155 1e-36 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 155 1e-36 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 155 1e-36 UniRef50_Q2IUG0 Two component transcriptional regulator, winged ... 154 2e-36 UniRef50_Q48H36 DNA-binding response regulator n=6 Tax=Gammaprot... 154 2e-36 UniRef50_A6TPN8 Two component transcriptional regulator, winged ... 154 2e-36 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 154 2e-36 UniRef50_A5N8U3 Transcriptional regulator n=3 Tax=Clostridium Re... 154 2e-36 UniRef50_A9HHL1 Probable two-component response regulator transc... 154 2e-36 UniRef50_Q1LCD6 Two component transcriptional regulator, winged ... 154 2e-36 UniRef50_B1ZUL4 Two component transcriptional regulator, winged ... 154 2e-36 UniRef50_B7JEB2 Alkaline phosphatase synthesis transcriptional r... 154 2e-36 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 154 2e-36 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 154 2e-36 UniRef50_UPI0001C318D2 two component transcriptional regulator, ... 154 2e-36 UniRef50_Q21HX3 Response regulator receiver n=1 Tax=Saccharophag... 154 2e-36 UniRef50_C4F9Y6 Putative uncharacterized protein n=2 Tax=Collins... 154 3e-36 UniRef50_C6VX71 Two component transcriptional regulator, winged ... 153 4e-36 UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax... 153 4e-36 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 153 4e-36 UniRef50_B8G179 Two component transcriptional regulator, winged ... 153 4e-36 UniRef50_D1BPS5 Two component transcriptional regulator, winged ... 153 5e-36 UniRef50_UPI00016B25CE two component transcriptional regulator, ... 152 6e-36 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 152 6e-36 UniRef50_B5D1V8 Putative uncharacterized protein n=2 Tax=Bactero... 152 7e-36 UniRef50_Q20YF2 Two component transcriptional regulator, winged ... 152 7e-36 UniRef50_Q030C5 DNA-binding response regulator, OmpR family (Rec... 152 7e-36 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 152 7e-36 UniRef50_A4SHT1 Two-component system response regulator n=10 Tax... 152 8e-36 UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostri... 152 1e-35 UniRef50_B8I014 Two component transcriptional regulator, winged ... 152 1e-35 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 152 1e-35 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 151 1e-35 UniRef50_P0A4H9 Transcriptional regulatory protein dltR n=9 Tax=... 151 2e-35 UniRef50_C3WHY2 Two-component response regulator n=8 Tax=Fusobac... 151 2e-35 UniRef50_Q020N6 Two component transcriptional regulator, winged ... 151 2e-35 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 151 2e-35 UniRef50_B8IU63 Two component transcriptional regulator, winged ... 151 2e-35 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 151 2e-35 UniRef50_B0KKE4 Two component transcriptional regulator, winged ... 150 2e-35 UniRef50_C0A842 Response regulator receiver protein n=5 Tax=Bact... 150 2e-35 UniRef50_C6JKI6 DNA-binding response regulator n=3 Tax=Bacteria ... 150 3e-35 UniRef50_C7IFX1 Two component transcriptional regulator, winged ... 150 3e-35 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 150 3e-35 UniRef50_B9CM45 DNA-binding response regulator n=1 Tax=Atopobium... 150 3e-35 UniRef50_B8HQE6 Two component transcriptional regulator, winged ... 150 3e-35 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 150 3e-35 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 150 4e-35 UniRef50_B1HMR9 Response regulator n=1 Tax=Lysinibacillus sphaer... 149 5e-35 UniRef50_A5FJG2 Two component transcriptional regulator, winged ... 149 5e-35 UniRef50_Q5SIK7 Response regulator n=12 Tax=Deinococci RepID=Q5S... 149 5e-35 UniRef50_B4B6S6 Multi-component transcriptional regulator, winge... 149 6e-35 UniRef50_B2IER4 Two component transcriptional regulator, winged ... 149 8e-35 UniRef50_A9KP45 Two component transcriptional regulator, winged ... 149 9e-35 UniRef50_Q15Y65 Two component transcriptional regulator, winged ... 149 1e-34 UniRef50_Q3Z755 DNA-binding response regulator n=2 Tax=Dehalococ... 148 1e-34 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 148 1e-34 UniRef50_B8I8Q2 Two component transcriptional regulator, winged ... 148 1e-34 UniRef50_B0TXH6 Response regulator receiver protein n=18 Tax=Fra... 148 1e-34 UniRef50_B9CPY7 DNA-binding response regulator n=3 Tax=Staphyloc... 148 1e-34 UniRef50_C6CH89 Two component transcriptional regulator, winged ... 148 1e-34 UniRef50_C3RN03 Response regulator arlR n=3 Tax=Bacteria RepID=C... 148 1e-34 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 148 1e-34 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 148 1e-34 UniRef50_B2V7S5 Two component transcriptional regulator, winged ... 148 2e-34 UniRef50_UPI0001B559F0 two-component system, response regulator ... 148 2e-34 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 148 2e-34 UniRef50_C1DUD1 Transcriptional activator protein IrlR n=1 Tax=S... 147 2e-34 UniRef50_B6J7N7 Transcriptional regulatory protein n=8 Tax=Gamma... 147 2e-34 UniRef50_C7RF78 Two component transcriptional regulator, winged ... 147 2e-34 UniRef50_A3QGG3 Two component transcriptional regulator, winged ... 147 2e-34 UniRef50_B1YFQ0 Two component transcriptional regulator, winged ... 147 2e-34 UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=... 147 2e-34 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 147 2e-34 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 147 2e-34 UniRef50_C7Q2J4 Two component transcriptional regulator, winged ... 147 3e-34 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 147 3e-34 UniRef50_B5JWQ3 Two-component system regulatory protein n=1 Tax=... 147 3e-34 UniRef50_B1HZW1 Transcriptional regulatory protein cutR (Defecti... 147 3e-34 UniRef50_Q8ZSA5 Two-component response regulator n=27 Tax=Cyanob... 147 3e-34 UniRef50_C9XJX9 Two-component system response regulator n=108 Ta... 147 3e-34 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 147 3e-34 UniRef50_Q97LA9 Response regulator (CheY-like receiver domain an... 147 3e-34 UniRef50_Q2S8G9 Response regulator consisting of a CheY-like rec... 147 3e-34 UniRef50_Q2S740 Response regulator consisting of a CheY-like rec... 147 3e-34 UniRef50_C0VPI8 Two-component response regulator n=4 Tax=Acineto... 147 4e-34 UniRef50_C5EI97 Response regulator receiver protein n=8 Tax=Bact... 147 4e-34 UniRef50_A7GLY2 Two component transcriptional regulator, winged ... 146 4e-34 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 146 4e-34 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 146 4e-34 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 146 4e-34 UniRef50_Q04HD6 DNA-binding response regulator, OmpR family (Rec... 146 4e-34 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 146 4e-34 UniRef50_C8KZR7 Two component transcriptional regulator n=5 Tax=... 146 6e-34 UniRef50_B9K181 Two component response regulator n=3 Tax=Rhizobi... 146 6e-34 UniRef50_B7GFY6 DNA-binding response regulator, OmpR family (REC... 146 6e-34 UniRef50_B0TXI9 Response regulator receiver protein n=14 Tax=Fra... 146 6e-34 UniRef50_Q1N0E1 DNA-binding response regulator n=1 Tax=Bermanell... 146 6e-34 UniRef50_A7X5Y5 Heme response regulator hssR n=71 Tax=Bacillales... 146 6e-34 UniRef50_Q2W278 Response regulator consisting of a CheY-like rec... 145 7e-34 UniRef50_C8PY86 DNA-binding response regulator n=1 Tax=Enhydroba... 145 7e-34 UniRef50_A6TKQ5 Two component transcriptional regulator, winged ... 145 7e-34 UniRef50_C1F588 TcrA n=1 Tax=Acidobacterium capsulatum ATCC 5119... 145 8e-34 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 145 8e-34 UniRef50_B9E984 Putative uncharacterized protein n=1 Tax=Macroco... 145 8e-34 UniRef50_A8RGX6 Putative uncharacterized protein n=1 Tax=Clostri... 145 8e-34 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 145 8e-34 UniRef50_Q2G7V2 Two component transcriptional regulator, winged ... 145 8e-34 UniRef50_B6FX18 Putative uncharacterized protein n=1 Tax=Clostri... 145 9e-34 UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmic... 145 9e-34 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 145 9e-34 UniRef50_C3X1J5 Response regulator receiver:Transcriptional regu... 145 1e-33 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 145 1e-33 UniRef50_C2ANN4 Response regulator with CheY-like receiver domai... 145 1e-33 UniRef50_C6W0A8 Two component transcriptional regulator, winged ... 145 1e-33 UniRef50_Q1IHT8 Two component transcriptional regulator, winged ... 144 1e-33 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 144 2e-33 UniRef50_B0RUJ6 Two-component system regulatory protein n=85 Tax... 144 2e-33 UniRef50_B9L7R6 Response regulator receiver domain protein n=2 T... 144 2e-33 UniRef50_B1ZQC8 Two component transcriptional regulator, winged ... 144 2e-33 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 144 2e-33 UniRef50_C6D1N2 Two component transcriptional regulator, winged ... 144 2e-33 UniRef50_A0PNV3 Two component regulator-receiver domain n=6 Tax=... 144 2e-33 >UniRef50_P76340 Probable transcriptional regulatory protein yedW n=131 Tax=Proteobacteria RepID=YEDW_ECOLI Length = 223 Score = 452 bits (1163), Expect = e-126, Method: Compositional matrix adjust. Identities = 223/223 (100%), Positives = 223/223 (100%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW Sbjct: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA Sbjct: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 Query: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN Sbjct: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK Sbjct: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 >UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax=cellular organisms RepID=CZCR_RALME Length = 225 Score = 256 bits (653), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 122/217 (56%), Positives = 166/217 (76%), Gaps = 1/217 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED RT E++ +GLSE+G+V+D ++G DGL++A + DY +IILD+MLPGMDGW Sbjct: 1 MRVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGW 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 +++++R+ +TPV+ LTA D V DRVRG + GA+DYLVKPF+F+ELLAR+R LRQ + Sbjct: 61 TVIKSIRSKSETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQSTS 120 Query: 121 LNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 S L I+ L +D + V R I LT +EF LL LL R GE++ RT IAS++WG+ Sbjct: 121 KESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSLLHLLMRRRGEVLSRTTIASQVWGV 180 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 NFD+DTN VDVAIRRLR+KVDDPF +KLI T+RGMGY Sbjct: 181 NFDTDTNVVDVAIRRLRSKVDDPFDQKLIHTVRGMGY 217 >UniRef50_Q1R1E2 Two component heavy metal response transcriptional regulator, winged helix family n=11 Tax=Proteobacteria RepID=Q1R1E2_CHRSD Length = 223 Score = 247 bits (631), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 120/217 (55%), Positives = 159/217 (73%), Gaps = 1/217 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED +T +++ +GL EAGY ++ DG DG +L + D+ LIILD+MLPG+DGW Sbjct: 1 MRILLVEDESKTADYLARGLGEAGYRVEVARDGLDGRHLIEEADFELIILDVMLPGLDGW 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 ++L+ +R Q PV+ LTARD+V+ RV+GL+ GA+DYLVKPFSF ELLARVR LR+ Sbjct: 61 ELLRLIRRHGQVPVLFLTARDAVEYRVKGLELGADDYLVKPFSFVELLARVRTLLRRGPL 120 Query: 121 LN-STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 +++ L MD + V+R + LT KEF LL LL R GE++ RT+IASE+WG+ Sbjct: 121 RERERFQVADLHMDVLKRRVTRGETRLALTNKEFALLQLLLEREGEVLSRTLIASEVWGM 180 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 NFDSDTN V+VA+RRLRAKVDDPF +LI T RGMGY Sbjct: 181 NFDSDTNVVEVAVRRLRAKVDDPFTRRLIHTERGMGY 217 >UniRef50_A9AKM2 Two component heavy metal response transcriptional regulator, winged helix family n=24 Tax=Proteobacteria RepID=A9AKM2_BURM1 Length = 232 Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 118/221 (53%), Positives = 158/221 (71%), Gaps = 1/221 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+L+IED + E++ GL+E G+V+D DG DG + A++ DY +++LD+MLP +DG+ Sbjct: 1 MKVLIIEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVMLPKLDGF 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 +L+ LR KQTPVI LTARD VDDRVRGL GA+DYL KPFSF EL+ R+RA R+ Sbjct: 61 GVLRALRAQKQTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRARV 120 Query: 121 LNSTL-EISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 STL I LR+D + +RD + LT +EFQLL +LA R+GE++ +T IA +W + Sbjct: 121 QESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWDV 180 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 NFDS+ N V+ AI+RLRAK+D PFPEKL+ TIRGMGY A Sbjct: 181 NFDSNANVVETAIKRLRAKLDGPFPEKLLHTIRGMGYVLEA 221 >UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax=Bacteria RepID=PCOR_ECOLX Length = 226 Score = 227 bits (578), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 113/217 (52%), Positives = 157/217 (72%), Gaps = 2/217 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL++ED Q+T ++ QGL E GY D ++GRDGL A K Y LIILD+MLP +DGWQ Sbjct: 3 RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 62 Query: 62 ILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 I+ LR + + PV+ LTA+D+V D+V+GL+ GA+DYL+KPF F+EL+ARVR LR+ + Sbjct: 63 IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 122 Query: 121 LNSTL-EISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 +T+ I+ + +D V +V R I LT KE+ LL LL R GE++PR++I+S +W + Sbjct: 123 QAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNM 182 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 NFDSDTN +DVA+RRLR+K+DD F KLI T+RG GY Sbjct: 183 NFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGY 219 >UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=Acinetobacter RepID=B7H0F7_ACIB3 Length = 223 Score = 218 bits (554), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 108/218 (49%), Positives = 148/218 (67%), Gaps = 1/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL+IED + ++ +GL E+GY + V G GL + +D Y L+ILD+MLP ++GW Sbjct: 1 MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 +LQ LR + PVI LTA+D V DRV+GL+ GA+DYL KPFS+ ELLAR+++ LR+ Sbjct: 61 SVLQVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQY 120 Query: 121 LNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 L L IS L+MD V H V R+ I L++ EF LL L +I+ R I SE+W I Sbjct: 121 LQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWNI 180 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 NFD+DTN +DVA+RRLR+K+D+ + KLI TIRG+GY Sbjct: 181 NFDTDTNFIDVAVRRLRSKIDEGYEPKLIHTIRGLGYK 218 >UniRef50_Q6AQP4 Probable two-component system response regulator (Pho family) n=1 Tax=Desulfotalea psychrophila RepID=Q6AQP4_DESPS Length = 224 Score = 209 bits (531), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 105/219 (47%), Positives = 146/219 (66%), Gaps = 3/219 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+LLIED+ + + +GL EAG+ +D+ +GR+GL ALK Y+ I+DIMLP DG Sbjct: 1 MKLLLIEDDLTIADLIQKGLEEAGFAVDSCHNGREGLSHALKGAYSAAIIDIMLPERDGL 60 Query: 61 QILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR--Q 117 I++ +R A K+TPV+ L+A+ SVDDR++GL G +DY++KPFSF ELL RV+A +R Q Sbjct: 61 SIIEEMRAAGKETPVLILSAKQSVDDRIQGLQRGGDDYMIKPFSFGELLVRVQALIRRDQ 120 Query: 118 HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 H+ + L I L MD + V RD I L KE+ LL +A AG + +T I +++ Sbjct: 121 KHSPQTRLSIGPLEMDLLRQQVCRDGGQIELPAKEYALLLYMAENAGTALSKTSILEKVY 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 G NFD TN VDV + RLRAK+D F ++LI TIRG+GY Sbjct: 181 GYNFDPQTNVVDVLVCRLRAKIDKGFGQQLIQTIRGVGY 219 >UniRef50_Q2SPE2 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=18 Tax=Proteobacteria RepID=Q2SPE2_HAHCH Length = 226 Score = 201 bits (512), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 98/220 (44%), Positives = 151/220 (68%), Gaps = 4/220 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L+IED++ ++++GL E+GYV+DA +G+ GL++A + Y L+++D MLP +DG Sbjct: 1 MRVLVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLVDRMLPELDGL 60 Query: 61 QILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR--- 116 +++ LR +TPV+ L+A VDDRV+GL +G +DYLVKPFSFSELLAR+ A LR Sbjct: 61 SVVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRRSQ 120 Query: 117 QHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 Q + +TL+++ L MD ++ +V R+ +SI L +EF+LL G+++ RT++ ++ Sbjct: 121 QQQDVVTTLKVADLEMDLLARTVKRNGLSIDLQPREFRLLEYFMRNPGQVLTRTMLLEKV 180 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 W +FD TN +DV I RLRAK+D F L+ TIRG GY Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKIDKDFETPLLHTIRGAGY 220 >UniRef50_Q026B5 Two component heavy metal response transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q026B5_SOLUE Length = 238 Score = 200 bits (509), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 103/224 (45%), Positives = 146/224 (65%), Gaps = 1/224 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL++ED +R +++ +GL AGY +DA G L L DY L++LD MLP MDG Sbjct: 1 MRILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRMLPDMDGL 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 Q+L+ +R+ K PV+ L+AR ++DDRV+GL+ GA+DYLVKPF+F ELLARVRA LR+ Sbjct: 61 QVLEKMRSRKAGPPVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRRGQ 120 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 L++S L +D + V+R +I L KEF +L + G + RT+I +W + Sbjct: 121 PTPERLQVSDLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEHVWDM 180 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 ++D TN VDV IR LR+K+DD F +KLI T+RG+GY A K Sbjct: 181 DYDGLTNIVDVYIRHLRSKIDDRFQQKLIQTVRGIGYMIEAPDK 224 >UniRef50_A6SYV4 Heavy metal response regulator n=1 Tax=Janthinobacterium sp. Marseille RepID=A6SYV4_JANMA Length = 232 Score = 198 bits (503), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 101/226 (44%), Positives = 148/226 (65%), Gaps = 10/226 (4%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL +ED + E + GL +AG+++D V G +GL AL+ Y LI+LD+ P ++GW Sbjct: 1 MKILFVEDEIKPGETMHHGLKDAGFIVDCVKAGSNGLTRALRGAYDLIVLDVKKPHLNGW 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 ++L LR A P++ LTAR+++D++V G +DY++K FSF EL+ RVR LR+ Sbjct: 61 KLLLELRAAHDAPLLFLTAREAMDNQVSDAKLGVDDYMIKSFSFMELMERVRILLRRECE 120 Query: 121 LN-STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG- 178 +EIS + +D V R+ I LTRK+F LL LLA R+GE + R++IA+++WG Sbjct: 121 QEPKIIEISDILIDVSKRCVLRNGRYIDLTRKQFSLLHLLAKRSGEALSRSLIAAQVWGA 180 Query: 179 --------INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 ++FD DTN VDVA+ RLRAK+DD +P++LI T+RGMGY Sbjct: 181 DFDGDTNVVDFDGDTNVVDVAVCRLRAKLDDHYPQQLIRTVRGMGY 226 >UniRef50_C9NWS1 DNA-binding heavy metal response regulator n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NWS1_9VIBR Length = 226 Score = 194 bits (492), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 100/220 (45%), Positives = 141/220 (64%), Gaps = 4/220 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKILLIED+ ++ G + G I ++G DGL+ A+ + Y +I+LDIMLP DG+ Sbjct: 1 MKILLIEDDTHIARFLINGFQQEGCTITHATNGVDGLHEAISESYDVIVLDIMLPQKDGF 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR--- 116 ++L LR TPV+ L+A+ SVD+RV+GL SGA+DYLVKPF+F ELLAR ++ R Sbjct: 61 EVLAQLRGEGHATPVLILSAKHSVDERVKGLQSGADDYLVKPFAFPELLARCQSLARRGQ 120 Query: 117 QHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 Q+ A + L S L +D + HS+ R+ SI L ++EF L+ L+ +I +T I ++ Sbjct: 121 QNPAQSYQLSYSELSLDLLKHSLERNGASIQLNQREFMLIKLMLENPETVISKTAILEQV 180 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 WG FD TN VDV + RLR+KVD F LI T+RG+GY Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFDTPLIHTLRGVGY 220 >UniRef50_C4XS15 OmpR family two-component response regulator n=2 Tax=Desulfovibrio RepID=C4XS15_DESMR Length = 223 Score = 193 bits (491), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 92/219 (42%), Positives = 149/219 (68%), Gaps = 3/219 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED+++ ++ GL ++G+ +D ++G DGL+LA + Y + I+D+MLPG+DG Sbjct: 1 MRILLVEDDEKIASFILGGLRQSGFAVDHAANGPDGLHLAATEPYCVAIIDVMLPGLDGL 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 Q+++ LR K TP+I L+A+ SV+DRVRGL++G +DYL KPFSF+ELLARV+A +R+ Sbjct: 61 QVIEELRRRKIMTPIIILSAKRSVEDRVRGLETGGDDYLSKPFSFAELLARVQALIRRST 120 Query: 120 ALN--STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + + + L + L M+ ++ VSR ++ L +EF LL G+++ +T+I +W Sbjct: 121 SASEPTRLTVGELSMNLLTREVSRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +FD TN VDV + RLR K+D + K++ T+RG+GY Sbjct: 181 DYHFDPQTNLVDVLVCRLRNKIDRDYDRKMLHTLRGVGY 219 >UniRef50_Q2JAC4 Two component transcriptional regulator, winged helix family n=90 Tax=cellular organisms RepID=Q2JAC4_FRASC Length = 283 Score = 190 bits (482), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 100/218 (45%), Positives = 137/218 (62%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED RT + +GL E GY +D V DG D ++ A + Y I+LD+MLPG+DG+ Sbjct: 30 MRVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDGF 89 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++ + LR A + PV+ LTAR VDDR+RGLD+GA+DYL KPFSF EL AR+RA +R+ Sbjct: 90 EVCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGA 149 Query: 120 ALNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 T L I LR+D H V R + L+ KEF LL LL E++ RT I +W Sbjct: 150 VERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVWD 209 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 FD +N VD +R +R K+D P LI T+RG+GY Sbjct: 210 FAFDGTSNIVDQYVRYVRRKIDIPDGPSLIETVRGVGY 247 >UniRef50_C7NAQ8 Two component transcriptional regulator, winged helix family n=10 Tax=Bacteria RepID=C7NAQ8_LEPBD Length = 227 Score = 187 bits (476), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 89/218 (40%), Positives = 144/218 (66%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED ++ +T+ L + Y +D+ DG + + +Y IILDIMLP +DG+ Sbjct: 1 MRLLVVEDEKKLNGLITKKLEKEYYGVDSCFDGEEAIRYVEGTEYDAIILDIMLPKLDGF 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++++ +R K + P++ LTARD++DD+V+GLD GA+DYLVKPF F EL+AR+R LR++ Sbjct: 61 EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120 Query: 120 A-LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 ++ + ++ L++D + +V RD + I L+ +E+ +L L G+I+PR I IW Sbjct: 121 GNADNVITVANLKVDLDAKTVFRDGVLIKLSGREYSILEYLIRNKGKILPRERIEDHIWN 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 ++ TN +DV IR LR K+DD + KLI TIRG+GY Sbjct: 181 YEYEGGTNVIDVYIRYLRKKIDDSYTPKLIHTIRGLGY 218 >UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepID=A5MZ62_CLOK5 Length = 228 Score = 186 bits (473), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 99/221 (44%), Positives = 133/221 (60%), Gaps = 4/221 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL++ED + +V L GY++D DGR GL ALK Y LIILD+MLP ++G + Sbjct: 5 KILIVEDEIKIARFVQLELEHEGYMVDQTGDGRVGLEKALKGGYDLIILDVMLPSLNGME 64 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 +L+ LR + PVI LTA+D + D+V GLD GA DY+ KPF+ ELLAR+R + Sbjct: 65 VLRRLRQISEIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKSNN 124 Query: 122 NSTLEI----SGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 N + L+MD H V+ +N I LT+KEF LL L + R I ++W Sbjct: 125 NVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEKVW 184 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 G ++ DTN VDV IR LR+K+DD F +K I TIRG+GY F Sbjct: 185 GYDYLGDTNIVDVYIRYLRSKIDDKFNKKYIYTIRGLGYQF 225 >UniRef50_A6CWR0 Two-component system response regulator (Pho family) protein n=5 Tax=Vibrionales RepID=A6CWR0_9VIBR Length = 224 Score = 186 bits (472), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 95/220 (43%), Positives = 138/220 (62%), Gaps = 4/220 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKILLIED+ +++ G + G + +DG DGL+ A+ D+ +IILDIMLP DG+ Sbjct: 1 MKILLIEDDSHIAKFLVNGFQQEGITVTHSTDGVDGLHEAVTADFDVIILDIMLPKKDGF 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++L LR TPVI L+A+ SV++RV+GL SGA+DYLVKPF+F ELLAR + +R+ Sbjct: 61 EVLAELRGQGHATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLMRRGK 120 Query: 120 ALNST---LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + L L +D + H++ R+ +I + ++EF L+ LL ++ +T I + Sbjct: 121 PPSPQALELNYGPLNLDLLKHTLQREQQNIAINQREFMLMKLLLENPETVMSKTAILEHV 180 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 WG FD TN VDV + RLR+KVD F LI T+RG+GY Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFATPLIHTLRGVGY 220 >UniRef50_B5JD22 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD22_9BACT Length = 239 Score = 185 bits (470), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 96/218 (44%), Positives = 136/218 (62%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+LL+ED ++ ++V +GL E GYV++ DG DG A Y +I+LDIMLPG DG Sbjct: 17 MKVLLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIMLPGRDGL 76 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 IL++LR + T PVI +TAR +D+R+ GL+ GA+DYL KPF EL+AR++A R+ Sbjct: 77 SILKSLRKSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSS 136 Query: 120 ALN-STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + S +++ L ++ + V RD + LT +EF LL L G ++ RT I +WG Sbjct: 137 GKSLSMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG 196 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +FD TN VDV ++RLR KVD LI T+RG GY Sbjct: 197 YDFDPSTNVVDVCVQRLRKKVDAGHDVHLIETVRGAGY 234 >UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacteria RepID=A0RG02_BACAH Length = 236 Score = 185 bits (470), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 95/218 (43%), Positives = 136/218 (62%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED Q Q + + L+ Y +DA +G D L Y LI+LDIM+PG++G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 72 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 Q+LQ LR T PV+ LTA+D++DDRV+GLD GA+DYLVKPF+F ELLAR+R +R+ Sbjct: 73 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 120 ALNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 S EI+ L +D H V+R + ITL+ KEF +L + ++ R I +W Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +++ +N +DV +R LR KVD F KLI T+RG GY Sbjct: 193 YDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGY 230 >UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax=Proteobacteria RepID=B8H4H9_CAUCN Length = 242 Score = 185 bits (469), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 102/231 (44%), Positives = 136/231 (58%), Gaps = 13/231 (5%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK--------DDYALIILDI 52 M IL++ED+ R +++ +GL GY + DG GL A D +I+LD+ Sbjct: 1 MHILVVEDDTRVADFLERGLKAEGYKVRVARDGVSGLEAARDLDAMLRELDQRGVILLDL 60 Query: 53 MLPGMDGWQILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARV 111 MLP M G ++ QTLR + TPV+ LTA +VDDRV GL +GA+DYLVKPFSF ELLAR+ Sbjct: 61 MLPKMTGMEVCQTLRASGVLTPVLMLTALGAVDDRVTGLRTGADDYLVKPFSFEELLARI 120 Query: 112 RAQLR----QHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEII 167 A LR Q N TL+ + +D + VSRD + LT +E LL L S G ++ Sbjct: 121 EALLRRSRDQRAPANRTLKAGNVELDRTTMRVSRDGEEVVLTARELALLELFLSSPGRVL 180 Query: 168 PRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 R I S +WG++ D TN VDV +RRLRAK+D P I T+RG+GY Sbjct: 181 SRERILSNVWGVDEDPLTNVVDVYVRRLRAKIDPPLASSFITTVRGLGYRL 231 >UniRef50_B5JI66 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JI66_9BACT Length = 224 Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 97/220 (44%), Positives = 141/220 (64%), Gaps = 2/220 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+L+ ED + ++ +GL EAGY +D DG + +LA +Y I DIM+PG DG Sbjct: 1 MKVLVAEDQTKVANFLAKGLGEAGYTVDLAKDGDEASWLAELHEYDAWIFDIMMPGRDGV 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR-QH 118 +++ LR K+TP I LTAR+ V+DRV+GLD+GA+DYL KPFS +ELLAR+RA LR Q Sbjct: 61 SLIRQLRRNGKRTPTILLTARNRVEDRVQGLDAGADDYLAKPFSLTELLARLRAILRRQR 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 +N+ + +S L++D VSH+ R I+LT +EF LL LL + + ++ I ++W Sbjct: 121 PEMNNLVSVSDLKLDLVSHTAWRGQREISLTNREFSLLELLMLASPRPVSKSAITEKVWD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 ++D+ TN V V I+ LR K+D LI T RG+GY+ Sbjct: 181 QSYDAGTNIVQVYIKYLREKIDQEGEPPLIQTARGIGYAI 220 >UniRef50_B8DZ94 Two component transcriptional regulator, winged helix family n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DZ94_DICTD Length = 224 Score = 183 bits (465), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 98/220 (44%), Positives = 139/220 (63%), Gaps = 4/220 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK--DDYALIILDIMLPGMD 58 MKIL+IED ++ + +GL + GYV+D DG + Y+ + Y L+ILDIMLP +D Sbjct: 1 MKILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKID 60 Query: 59 GWQILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 G + + LR Q P++ LTA+D V+D++ GL+SGA+DYLVKPFS+ ELLAR+RA LR+ Sbjct: 61 GISLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLRR 120 Query: 118 HHALNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 L T L++ + +D+VS V R +I I LT KEF +L L II + I S + Sbjct: 121 PKNLMPTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQIISHV 180 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 WG D+ +N V+ I+ LR K++ E +I TIRGMGY Sbjct: 181 WGYESDTLSNVVEAHIKNLRKKLERKRDENIIETIRGMGY 220 >UniRef50_A5VEY8 Two component transcriptional regulator, winged helix family n=7 Tax=Proteobacteria RepID=A5VEY8_SPHWW Length = 225 Score = 183 bits (465), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 97/219 (44%), Positives = 143/219 (65%), Gaps = 3/219 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M +LLIED+ R + V +GL EAG++++ +DGR+GL A + + +I+LD MLP +DG Sbjct: 1 MHVLLIEDDPRVADHVGKGLREAGHIVETAADGREGLLRAAAESFDVIVLDRMLPQVDGL 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +ILQT+R T TPV+ L+A VD+R+RGL +G +DYL KPF+ SEL+ARV A R+ Sbjct: 61 KILQTIRATGDATPVLILSALGDVDERIRGLRAGGDDYLPKPFALSELVARVEALGRRGP 120 Query: 120 ALNSTLEI-SG-LRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 A+ E+ SG L +D + +V+R I LT++EF++L L AG ++ R+++ +W Sbjct: 121 AIAEATELRSGDLAIDLLGRTVTRAGRRIDLTQREFRILEYLVRSAGRVVTRSMLLEHVW 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 NFD TN +D + RLR K+D F LI T+RG GY Sbjct: 181 DYNFDPQTNIIDQHVSRLRQKLDRGFDTPLIETVRGTGY 219 >UniRef50_B9XE94 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobiales RepID=B9XE94_9BACT Length = 224 Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 138/218 (63%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL++ED ++T ++ + L + +D DG + L LA + I+LDIMLPG DG Sbjct: 1 MRILVVEDEKKTASFIRKALQAESFAVDVSHDGTEALLLASNTPFDAIVLDIMLPGRDGL 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +L+ LR K QTPV+ L+AR V++RV GL++GA+DYL KPF+ +EL+ARVR+ R+ + Sbjct: 61 SVLRQLRQQKNQTPVLLLSARGEVNERVEGLNAGADDYLPKPFALAELIARVRSIGRRSN 120 Query: 120 ALNSTL-EISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 S L +++ L +D+++ R S LT +E++LL L G I R I ++W Sbjct: 121 EPKSVLLQVADLTLDTITRQAQRGGTSFELTTREYRLLEFLMRTPGRICGRMAILEKVWD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +FD TN VDV I+RLR KVD+ F KL+ T+R +GY Sbjct: 181 YDFDPGTNLVDVYIKRLREKVDEGFEPKLLHTVRNVGY 218 >UniRef50_C6LFE5 DNA-binding response regulator CsrR n=2 Tax=Firmicutes RepID=C6LFE5_9FIRM Length = 247 Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 96/225 (42%), Positives = 139/225 (61%), Gaps = 11/225 (4%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL++ED ++ +V L GY + +GR+ L +AL D+ALI+LDIMLPG++G ++ Sbjct: 11 ILVVEDEEKLARFVELELVHEGYTVSKAVNGREALEIALSGDFALILLDIMLPGLNGLEV 70 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH---- 118 L+ L+ K TPVI LTARD+V D+V GLD+GA DY+ KPF+ ELLAR+R L+ H Sbjct: 71 LRRLQQEKPTPVILLTARDAVMDKVAGLDAGAVDYITKPFAIEELLARIRVALKLHGDTR 130 Query: 119 -HALNSTLEISG------LRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTV 171 A E +G L++ H V+ D I LT +EFQ+L L ++ R V Sbjct: 131 RSARRPEEEETGVYRWGRLQLSEKRHQVTYDGTEIILTNREFQMLKTLLENQDIVLTREV 190 Query: 172 IASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 + + + G ++ +TN VDV IR LRAK+D+ F K+I T+RG+GY Sbjct: 191 LLNRVCGYDYVGETNVVDVYIRFLRAKIDEAFQIKMIQTVRGVGY 235 >UniRef50_Q1IUY4 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUY4_ACIBL Length = 232 Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 100/221 (45%), Positives = 139/221 (62%), Gaps = 6/221 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL+ ED +R E + GL+E G+ + +G D L +A+ ++ ++LD+MLPGMDG+ Sbjct: 1 MRILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVMLPGMDGF 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-- 117 ++ + LR +Q P++ LTARD+ D +RGLD+GA+DY+ KPFSFSELLAR+RA R+ Sbjct: 61 EVARRLRHKGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRRTG 120 Query: 118 -HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 H + STL L +DS SH V R + I LTR EF LL L AG + R + + Sbjct: 121 PHRS--STLVCEDLTLDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGNV 178 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 WG + + NT+D IR LR KVD KLI T+RG GYS Sbjct: 179 WGYDRAIENNTLDAFIRLLRQKVDTQGHPKLIQTVRGFGYS 219 >UniRef50_C1ABP4 OmpR family two-component response regulator n=2 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABP4_GEMAT Length = 231 Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 96/217 (44%), Positives = 136/217 (62%), Gaps = 2/217 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++LL ED+ + ++ +T+GL E +V+D+V DG +AL + Y +ILDI++PGMDG Sbjct: 1 MRLLLAEDDPQLRDAITRGLRELAFVVDSVGDGETAFTMALVNSYDAVILDILMPGMDGI 60 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 I + LR + P++ LTARD+VD+R++GLD+GA+DYL KPF F EL ARVRA LR+ Sbjct: 61 AICRGLRARQMAVPILLLTARDAVDERIQGLDAGADDYLTKPFHFGELTARVRALLRRMS 120 Query: 120 A-LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L ST+ + L +D+ RD + LT +EF LL LA AG I+ R +A +W Sbjct: 121 VVLPSTMAVGDLEIDTRLQQARRDGALLPLTAREFTLLAYLARHAGRIVSRGELAEHVWD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMG 215 N D + N +DV + RLR KVD L+ T RG G Sbjct: 181 ENHDPNANLIDVYVSRLRRKVDGAGRRPLLHTRRGQG 217 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 180 bits (457), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 94/221 (42%), Positives = 138/221 (62%), Gaps = 5/221 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL++ED ++ + L GY + +G +GL A + Y+L++LD+MLPG+ G ++ Sbjct: 6 ILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLEV 65 Query: 63 LQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA- 120 L+ LR T QTPVI LTARDS+ D+V GLD GANDY+ KPF ELLAR+RA LRQ+ Sbjct: 66 LRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGTK 125 Query: 121 ---LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + + L LR++ + V R + + LT +EF LL + +++ R I S +W Sbjct: 126 TEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSVW 185 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 G ++ DTN VDV IR +R K+D P+ ++LI TIRG+GY+ Sbjct: 186 GFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAI 226 >UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD Length = 231 Score = 179 bits (455), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 101/221 (45%), Positives = 133/221 (60%), Gaps = 3/221 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED R + Q L E Y +D DG G LAL D Y L ILDIMLP M G Sbjct: 1 MRILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGL 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-- 117 IL+ +R A QTPV+ LTA+D+V+DRV GLD+GA+DYLVKPF ELLARVRA R+ Sbjct: 61 DILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRTG 120 Query: 118 HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 A +E R+D + +V+R+ + LT KEFQLL L +++ + VI +W Sbjct: 121 QIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVW 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 G + D N V+ + LR K+D+P I T+RG+GY F Sbjct: 181 GPDADVIGNAVENYVHFLRKKIDEPDLPSYITTVRGVGYMF 221 >UniRef50_D2QKB6 Two component transcriptional regulator, winged helix family n=11 Tax=Bacteroidetes RepID=D2QKB6_9SPHI Length = 230 Score = 179 bits (454), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 94/220 (42%), Positives = 138/220 (62%), Gaps = 4/220 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL++ED + +V +GL E +D DG+ G +AL + Y +I+LDI LP M+G+ Sbjct: 6 MKILVVEDEPKLASFVKKGLEEQSCEVDVAYDGQVGRNMALNNLYDVIVLDINLPKMNGF 65 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++Q++R K +TPV+ LTA SVDD++ G ++GA+DYLVKPF F EL+AR+RA ++ Sbjct: 66 DVVQSIRQEKNRTPVLMLTAMGSVDDKLTGFEAGADDYLVKPFEFRELMARLRALTKRSS 125 Query: 120 ---ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + L+++ L +D R + I LT KEF LL L G ++ R IA ++ Sbjct: 126 DAGMQTNVLKVADLELDLNEKVARRGDKRIELTAKEFGLLDYLMRNRGRVVSRVDIAEKV 185 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 W I+FD+ TN +DV + LR K+D FP KLI T+ GMGY Sbjct: 186 WDIHFDTGTNVIDVYVNFLRKKIDKDFPTKLIHTVIGMGY 225 >UniRef50_A9BP99 Two component transcriptional regulator, winged helix family n=60 Tax=Proteobacteria RepID=A9BP99_DELAS Length = 262 Score = 179 bits (453), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 96/221 (43%), Positives = 138/221 (62%), Gaps = 4/221 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLP-GMDGW 60 + L+IED+ ++ +GL + G + SDG G+ +A+ + + +IILD MLP G DG Sbjct: 31 RYLIIEDDALNARYIAEGLRQQGAQVAVCSDGVQGIAMAVGESWDVIILDRMLPNGFDGL 90 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR--Q 117 QILQTLR+ KQTPV+ L+A + D+RVRGL +G +DYL KPF+FSEL AR+ A +R Q Sbjct: 91 QILQTLRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQ 150 Query: 118 HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 A + ++ LR++ ++ S R + L +EF+LL L A +I+ RT++ +W Sbjct: 151 IPAPAREMRLADLRLNLLTRSAERAGQPLALQPREFRLLAFLMQHAHQIVTRTMLLESVW 210 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 FD TN +DV I RLR KVD F LI T+RG+GYS Sbjct: 211 DYRFDPQTNVIDVHISRLRGKVDKGFEPALIHTVRGVGYSL 251 >UniRef50_C0Z5X8 Two-component response regulator n=143 Tax=Firmicutes RepID=C0Z5X8_BREBN Length = 251 Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 90/219 (41%), Positives = 134/219 (61%), Gaps = 4/219 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++LLIED ++ LS + I DG GL LAL++++ +I+LD+MLPG+DG Sbjct: 29 RVLLIEDEINMARFIELELSYESFAITVAHDGHKGLKLALQEEWDVILLDVMLPGLDGIA 88 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR----Q 117 + Q +R+ K+TP+I LTARDS+ DRV GLDSGA+DY+ KPF+ ELLAR+R R Q Sbjct: 89 VCQKIRSVKKTPIIMLTARDSITDRVFGLDSGADDYIPKPFAIEELLARIRVVFRRQEEQ 148 Query: 118 HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + + L GL + V+++N + LT++E+ LL ++PR V+ +W Sbjct: 149 ENVPRTMLAHRGLVVQIEGRIVTKNNQPVELTKREYDLLVTFMKNINRVLPRDVLLDTVW 208 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 G +TN VDV +R LR K+D P + I+T+RG+GY Sbjct: 209 GFEAAVETNVVDVYVRYLRNKIDFPNEDSYISTVRGIGY 247 >UniRef50_C6QDD0 Two component transcriptional regulator, winged helix family n=5 Tax=Proteobacteria RepID=C6QDD0_9RHIZ Length = 262 Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 89/221 (40%), Positives = 140/221 (63%), Gaps = 3/221 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L+IED++ T +++ + L E G+ D DG GL LA Y ++I+D MLP +DG Sbjct: 37 MRVLVIEDDRETAQFLQKSLKENGHTADLAGDGEAGLALATDGAYDVLIVDRMLPLLDGL 96 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-- 117 ++++LR +TPV+ L+A VDDRV+GL +G +DYL KP+++SELLARV A R+ Sbjct: 97 SVIKSLRAEGNRTPVLILSALGEVDDRVKGLRAGGDDYLTKPYAYSELLARVEALGRRTA 156 Query: 118 HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + + + L +D +SH V+R I L +E++LL L AG+++ RT++ +W Sbjct: 157 PEEQQTRISVGDLVLDRLSHRVTRSGEHILLQPREYRLLEYLMQHAGQVVTRTMLLEHVW 216 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +FD TN +DV + RLRAK+D F + L+ T+RG GY+ Sbjct: 217 DYHFDPQTNVIDVHVSRLRAKIDKNFDKPLLHTVRGAGYTI 257 >UniRef50_A9BRL1 Two component transcriptional regulator, winged helix family n=1 Tax=Delftia acidovorans SPH-1 RepID=A9BRL1_DELAS Length = 230 Score = 177 bits (448), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 91/217 (41%), Positives = 135/217 (62%), Gaps = 1/217 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL+++ + + +++ QGL + G+ +D V DG G LAL Y+L++LD+ LPG G Sbjct: 1 MKILIVDAHPPSAQYLCQGLCQDGFNVDVVHDGLQGRNLALSRAYSLLVLDLDLPGQSGR 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 +LQTL A TP I +TA DS++D+V L +GA+DYLVKP LAR R ++R Sbjct: 61 AVLQTLLQAGDTPTIVVTANDSLEDQVFCLQNGADDYLVKPVRLPVFLARARLRMRGSAG 120 Query: 121 LNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 L ++ L +D V R + LTR+EF +LWLL R G+++ R + ++W + Sbjct: 121 QEGLRLTLADLVLDLSKKRVERAGRRLDLTRQEFAVLWLLLQRQGDVVTRAELVQQVWSL 180 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 D+ N VDVA+ RLR+K+DDP+ KL+ T+RGMGY Sbjct: 181 PVDALNNVVDVAVCRLRSKLDDPYAVKLLHTVRGMGY 217 >UniRef50_B7QTW7 Two-component response regulator n=1 Tax=Ruegeria sp. R11 RepID=B7QTW7_9RHOB Length = 225 Score = 176 bits (445), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 93/224 (41%), Positives = 139/224 (62%), Gaps = 5/224 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED+ W ++GL AG+V+D + +GR+ L A DY +++ D M+P +DG Sbjct: 1 MRILLLEDDADIGAWTSKGLGAAGHVVDWIENGREALIAASTRDYDVLVFDRMVPDLDGL 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR--- 116 L+TLR A+ TP+I LTA +V+DRV GL++GA+DYL KPF+ SELLAR+ A R Sbjct: 61 SALRTLRGARINTPMILLTALGAVEDRVEGLEAGADDYLSKPFAMSELLARITALSRRGR 120 Query: 117 -QHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 + A + L GL +D +S + + ++ L KEF+LL +L G I R ++ Sbjct: 121 GEGDAPATKLSHRGLELDLLSQTCTCHGTAVPLNPKEFRLLEVLMRSKGRIQTRAMLLER 180 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 +W INF+ T+ V+ + RLR K++ PF + I TIRG GY F+ Sbjct: 181 VWDINFEPSTSVVETHMSRLRNKIEKPFDAEYIRTIRGSGYMFI 224 >UniRef50_C7LY45 Two component transcriptional regulator, winged helix family n=2 Tax=Actinobacteria (class) RepID=C7LY45_ACIFD Length = 236 Score = 175 bits (444), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 91/218 (41%), Positives = 136/218 (62%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L+++D + + +GLS G+ +D SDG GL +A Y I+LDIMLPG++G+ Sbjct: 1 MRLLIVDDEENLLASLKRGLSAEGFAVDTASDGTTGLDMARHAPYDCIVLDIMLPGVNGF 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 + Q LR + TP++ LTA+D D LD+GA+D L KPFSF+ L+AR+RA LR++ Sbjct: 61 KFTQLLREERNWTPILMLTAKDGEYDEAEALDTGADDVLKKPFSFTVLVARIRALLRRNV 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + L+ L +D SH V+R N++I LT +EF L LL G ++ + I + +W Sbjct: 121 ESHPPILQAGDLTLDPASHRVTRGNVTIDLTTREFSFLELLLRNKGHVLRKQDIIAHVWD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +F+ D+N V+V I LR K+D PF K I TIRG+GY Sbjct: 181 YDFEGDSNIVEVYIGYLRKKIDVPFGTKAITTIRGVGY 218 >UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C5NUZ8_9BACL Length = 223 Score = 174 bits (440), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 89/224 (39%), Positives = 141/224 (62%), Gaps = 3/224 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL++ED + +T+ L Y +D+ DG + L DY LII DIM+P +DG+ Sbjct: 1 MKILVVEDERDLNRIITKHLKRNNYSVDSCFDGEEALDFVGYSDYDLIITDIMMPNVDGY 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + ++ LR +K TPVI LTA+D+++D++ GLDSGA+DY+VKPF F EL AR+R +R+++ Sbjct: 61 EFIKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRRNY 120 Query: 120 AL-NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L + ++I + +D V+R+ +I LT KE+++L L I+ R I + +W Sbjct: 121 GLATNVIQIDDIVLDISKKQVTRNGENIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 ++D +N VDV I+ +R K+D+ + +I T RG+GY FV K Sbjct: 181 YDYDGASNIVDVIIKNIRKKLDNGTDKTIIYTKRGLGY-FVKEK 223 >UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteobacteria RepID=Q2T1W7_BURTA Length = 272 Score = 174 bits (440), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 91/220 (41%), Positives = 133/220 (60%), Gaps = 5/220 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L IED++ T + L G+ +D V++GRDG+ A+ DDY +I LD MLPG+DG Sbjct: 50 RVLTIEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLPGVDGLT 109 Query: 62 ILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 IL T+R+ +TPV+ L+A VD+RVRGL +G +DYL KPF E+ AR+ LR+ A Sbjct: 110 ILTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDTEEMTARLEVLLRRSQA 169 Query: 121 ----LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 +TL + L +D +S V RD I L E+++L + AG+ I R ++ + Sbjct: 170 SPAPFETTLAVGPLTLDLISRKVYRDGAEIALLPTEYRVLEFMMRHAGQTITRMMLFEAV 229 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 WG +FD TN +DV + RLR K+D P +I T+RG GY Sbjct: 230 WGYHFDPGTNLIDVHMGRLRKKIDPPDATPMIRTVRGAGY 269 >UniRef50_A4AIS8 Two-component system, regulatory protein n=2 Tax=Actinobacteria (class) RepID=A4AIS8_9ACTN Length = 242 Score = 173 bits (439), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 90/223 (40%), Positives = 138/223 (61%), Gaps = 2/223 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 +KIL++ED+ V GL + GY + V++G D L ++++ +D+MLP M G+ Sbjct: 19 LKILVVEDDAAMGALVQHGLEDDGYAVTLVTNGVDALIATAHENFSAAAIDVMLPEMTGF 78 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +I + LR + PV+ LTARD+V+DRV GLDSGA+DYL KPF+F+E AR+RA +R+ Sbjct: 79 EICRHLRKQGNSLPVLLLTARDAVEDRVLGLDSGADDYLTKPFAFAEFAARIRALVRRDT 138 Query: 120 ALN-STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 A +TL+I L +D+ + + + ++ KEF LLW+LA+ GE + R+ I SE+WG Sbjct: 139 AAGKATLKIGELALDAATVRATSAGNPLPMSSKEFALLWMLATHPGEALTRSTILSEVWG 198 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 D N VD + LR K++ I+T+RG+GY+ AV Sbjct: 199 TTAHIDANVVDQYVSYLRRKLEPTQSGVTISTVRGVGYALSAV 241 >UniRef50_C7MLF5 Response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein n=10 Tax=Bacteria RepID=C7MLF5_CRYCD Length = 234 Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 98/227 (43%), Positives = 140/227 (61%), Gaps = 12/227 (5%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL++ED ++ ++ L GY +D SDGR G+ AL DY LI+LDI+LP ++G + Sbjct: 3 KILIVEDEEKIARFIELELKHEGYEVDKASDGRSGVEQALSADYDLILLDILLPQINGLE 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 +L+ +R K TP I LTARD+V D+V GLD+GA+DYL KPF+ ELLAR+R L+ H + Sbjct: 63 VLRRIRREKDTPTIMLTARDAVMDKVAGLDAGADDYLTKPFAIEELLARIRVALKHHKSP 122 Query: 122 N------------STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPR 169 + TL I G+ +D V ++ + LT +EF++L L AG ++ R Sbjct: 123 DQPTSLSPEPTATKTLSIKGVLLDIDRREVRVNSDPVELTNREFEVLRCLMEHAGVVMHR 182 Query: 170 TVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 IA++ G F D+N VDV I LRAK+DD KLI+T+RG+GY Sbjct: 183 ERIAADALGYEFMGDSNNVDVHIAHLRAKIDDKHDIKLISTVRGVGY 229 >UniRef50_A6X2C4 Two component transcriptional regulator, winged helix family n=59 Tax=cellular organisms RepID=A6X2C4_OCHA4 Length = 255 Score = 172 bits (437), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 88/223 (39%), Positives = 134/223 (60%), Gaps = 3/223 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL+IED++ ++ + +EAG+ D DG G LA Y ++++D MLP DG Sbjct: 21 MKILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYTLAENGSYDVLVVDRMLPKRDGL 80 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 ++ LR +TPV+ L+A VDDRV GL +G +DYL KP++FSELLARV R+ Sbjct: 81 SVVAGLRARGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 140 Query: 119 -HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 ++ + L +D ++H+ R ++ ITL +EF+LL L AG+++ RT++ +W Sbjct: 141 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 200 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 +FD TN +DV I RLR+K++ F L+ T+RG GY A Sbjct: 201 DYHFDPQTNVIDVHISRLRSKIEKGFDGPLLHTVRGAGYMLKA 243 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 172 bits (436), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 84/215 (39%), Positives = 136/215 (63%), Gaps = 1/215 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+I+D+ + + + L+ GY ++ +DG G+ +A ++ L+ILDIMLPG+DGW+ Sbjct: 4 RVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGWE 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 I Q R TP++ L+ARD V+ +V+GL+ GA+DYL KPF+ ELLARV+A LR+ Sbjct: 64 ICQRFRKDNFTPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRRRITA 123 Query: 122 NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINF 181 N ++ S L+MD + V R +TLT +EF LL +++ R I +WG++F Sbjct: 124 NKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVWGLDF 183 Query: 182 DSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +N ++V I LR K++D + ++I T+RG+GY Sbjct: 184 TGGSNVLEVYINMLRQKIED-YGSRIIHTVRGVGY 217 >UniRef50_Q12T20 Two component transcriptional regulator, winged helix family n=11 Tax=Gammaproteobacteria RepID=Q12T20_SHEDO Length = 225 Score = 172 bits (436), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 93/220 (42%), Positives = 137/220 (62%), Gaps = 5/220 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL+IED+ TQ ++ +G + D SDG++GL+LA + Y LI+LD MLP +DG Sbjct: 1 MKILIIEDDATTQSYLVEGFAAQNIATDTASDGQEGLHLARHNSYDLIVLDRMLPKLDGL 60 Query: 61 QILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVR--AQLRQ 117 +L LR++ TPV+ L+A + VD+RV+GL +G +DY+ KPF+F+ELL RV Q Q Sbjct: 61 TLLGALRSSGNSTPVLILSALNHVDERVKGLRAGGDDYMTKPFAFAELLVRVEKLTQRNQ 120 Query: 118 HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 A + L + LRM+ ++ V+ + L KEFQLL L ++I RT++ +W Sbjct: 121 GIAAPAELVVGQLRMELLTRVVTLAEHELMLQPKEFQLLKYLMEHPNKVISRTLLFEAVW 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGY 216 +FD TN +DV I +LR K ++ FPE +I T+RG GY Sbjct: 181 DYHFDPRTNVIDVHIAKLRRKFEEIGFPE-MIETVRGAGY 219 >UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=6 Tax=Bacteria RepID=B3DZZ9_METI4 Length = 268 Score = 172 bits (436), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 135/223 (60%), Gaps = 2/223 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED + ++++ L E G+ +D S G + L + L Y +LDIMLPG DG Sbjct: 46 MRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGI 105 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +L++LR P++ L+AR D++ GL+SGA+DYL KPFS EL+AR+RA +R+ Sbjct: 106 SVLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTA 165 Query: 120 ALN-STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + S ++ L ++ ++ V R I LT KEF +L LL G + RT + +W Sbjct: 166 GIGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVWN 225 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 +FD TN VDV I++LR K+D+ +KLI T+RG+GY A+ Sbjct: 226 YHFDPGTNLVDVYIQKLRKKIDEGEEQKLIQTVRGVGYKIEAL 268 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 132/223 (59%), Gaps = 6/223 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 ++I ++ED +R ++ L G+ + +G ++ ++ L++LD+MLPGMDG Sbjct: 5 VRIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGM 64 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH-- 118 I + +R P+I LTA+D V+D+V GLD GA+DY+ KPF+ EL+AR+R LR+H Sbjct: 65 TICKRVREVSSLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHVP 124 Query: 119 ----HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 L L++ L M + V D ++ LT+KE+ LL + ++ R I Sbjct: 125 DNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQILE 184 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 ++WG ++ DTN VDV IR LRAK+DD F EK I T+RG+GY+ Sbjct: 185 KVWGYDYSGDTNVVDVYIRYLRAKLDDRFHEKYIYTVRGVGYA 227 >UniRef50_A5FEG3 Two-component transcriptional regulator, winged helix family n=4 Tax=Bacteroidetes RepID=A5FEG3_FLAJ1 Length = 224 Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 91/220 (41%), Positives = 133/220 (60%), Gaps = 4/220 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+L++ED + +G +E + DG+ L + ++ +++LD+MLP ++G Sbjct: 1 MKLLIVEDEPNLLSILRKGFAENNNEVSVALDGKTALEMIDNYNFDVVVLDVMLPDINGI 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +I + LR +K P++ LTA + ++ V GL+SGA+DYLVKPF F EL ARV A R+ H Sbjct: 61 EICRRLRASKNFVPILLLTALGTSENIVTGLNSGADDYLVKPFKFGELDARVNALHRRAH 120 Query: 120 ALNSTLE---ISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 ++ I L ++ + +V RD SI LT KEF+LL+ L AG I+ R I + Sbjct: 121 QETDKIDVITIGDLEINGRAKTVKRDGESIILTAKEFKLLYYLGKNAGRIVSRDQILDNV 180 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 W INFD +TN VDV I LR KVD PF KLI T++G+GY Sbjct: 181 WDINFDMNTNVVDVYITYLRKKVDKPFKTKLIHTMKGLGY 220 >UniRef50_A9GMJ5 Two-component response regulator n=3 Tax=Bacteria RepID=A9GMJ5_SORC5 Length = 256 Score = 170 bits (431), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 94/217 (43%), Positives = 129/217 (59%), Gaps = 2/217 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL+IED ++ ++ +GL+E G+ + D + DY L+++D LP DG Sbjct: 34 MRILVIEDERKIAGFLRRGLAEEGHQVHVEEDLAGARRALAQGDYDLLLVDRALPDGDGL 93 Query: 61 QILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +++ LR TP ICLTARD V +RV GL GA+DYL KPFSF ELLAR+ A + + Sbjct: 94 DLIRELRRGGAATPAICLTARDRVGERVEGLHGGADDYLPKPFSFEELLARI-AAVSRRA 152 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 + +E++ L +D +H V R I LT KEF LL LA AG ++ RT + +W + Sbjct: 153 GRSERVEVADLLIDLAAHRVERAGREIHLTAKEFALLRALAESAGRVLSRTRLLERVWDV 212 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 D TN VDVAI LRAKVD F LI T+RG+GY Sbjct: 213 GHDPGTNVVDVAISALRAKVDRGFARPLIHTVRGVGY 249 >UniRef50_D1B9J7 Two component transcriptional regulator, winged helix family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9J7_THEAS Length = 226 Score = 170 bits (430), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 90/220 (40%), Positives = 134/220 (60%), Gaps = 4/220 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L+IEDN+ + + +G E G+ +D DGR+GL L Y +ILDIMLP MDG+ Sbjct: 1 MRLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKYDCVILDIMLPEMDGF 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 +++ +R PVI LTA+DSV+DRV GL+ GA+DYL KPF F EL+ARV A +R+ Sbjct: 61 EVMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRRSG 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 S L+ L +D V+ +I + L R+EF +L LL ++ R I +++W Sbjct: 121 DQRRSILKCGPLTLDPVARECRVGDIKVPLRRREFDILELLMRYENQVFSRDKIIAQVWQ 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFP-EKLIATIRGMGYS 217 +D +N VDV I+ LR K+ PF + ++ T+RG+GY Sbjct: 181 KEYDGTSNVVDVHIKYLRDKL-RPFNLDMMVVTVRGVGYK 219 >UniRef50_A5FCZ9 Two component transcriptional regulator, winged helix family n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FCZ9_FLAJ1 Length = 230 Score = 170 bits (430), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 133/219 (60%), Gaps = 4/219 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+LL+ED+ R ++ +GL E Y + VS G + + +++D+ +IILDIMLP + G++ Sbjct: 3 KVLLVEDDPRVASFILRGLEENLYQVKTVSKGYEAVNEVMENDFDIIILDIMLPDITGFE 62 Query: 62 ILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + + LR K P++ L+A D+ ++V+GL SGA+DYL KPF F ELLAR+ AQLR+ Sbjct: 63 VCEILRNRKIIVPILILSALDTPHEKVKGLQSGADDYLAKPFLFEELLARINAQLRRAEF 122 Query: 121 LNSTLEI---SGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + L+ +G+ ++ S SRD + L+ +E +LL + + R IA +W Sbjct: 123 SSGILDFQSYAGIEINMKEQSASRDGKELNLSSRELKLLIFFMKNREKALSRIAIAEAVW 182 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 + D ++NTVDV I LR KVD F E LI T++G GY Sbjct: 183 NLELDMNSNTVDVYINYLRNKVDKNFSEPLIHTVKGTGY 221 >UniRef50_D1B4N2 Response regulator receiver n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B4N2_SULD5 Length = 224 Score = 169 bits (429), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 87/219 (39%), Positives = 134/219 (61%), Gaps = 1/219 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL++ED++ ++ QGL E + ++ +G D LYLA + Y +IILD+M+ G+ G Sbjct: 1 MKILIVEDDEGIASFLKQGLEEELFSVELCDNGEDALYLAQMNPYDMIILDLMIKGVQGD 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + Q LR K TP+I L+A+ ++ D+V L GA+DYL KPFSF ELLAR+ QLR+ + Sbjct: 61 VVCQKLREQKLHTPIIVLSAKSTISDKVGLLHLGADDYLTKPFSFEELLARIHVQLRKQN 120 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 L+++ L ++ V+ SV+R I+LT KE+ LL L G II ++ +++ Sbjct: 121 DKEPLLKVADLELNPVTKSVTRSKEVISLTAKEYMLLEYLMRHKGAIIEEKMLEEQLFSS 180 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 ++N V V + RLR+K+D F KLI T R +GY+ Sbjct: 181 EQSINSNMVSVYMYRLRSKIDKNFELKLIKTHRNLGYTL 219 >UniRef50_Q3B3K7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteroidetes/Chlorobi group RepID=Q3B3K7_PELLD Length = 232 Score = 169 bits (429), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 89/217 (41%), Positives = 130/217 (59%), Gaps = 1/217 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L+IED ++ +GL E + +D DG GL L + +DY L ++D MLP + G Sbjct: 1 MRLLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDYDLCLIDWMLPKLSGI 60 Query: 61 QILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++ + LR A PVI LTARD++DD V GL +GA+DY+ KPF+F ELLAR+RA+LRQ+ Sbjct: 61 EVCRQLRKAGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLRQNT 120 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 L L +D +H + +TLT KEF LL L + R+ I +W I Sbjct: 121 PTTGPLTAGALWLDPETHRAGCNRHDLTLTPKEFALLEYLLRNLDRVCTRSRIIEHVWDI 180 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +FD+DT+ +DV + LR K++ LI T+RG+GY Sbjct: 181 HFDADTSVIDVYVNFLRRKLEAAGCTGLIKTVRGVGY 217 >UniRef50_C6Q063 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q063_9CLOT Length = 367 Score = 169 bits (428), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 135/220 (61%), Gaps = 2/220 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 + IL+++D + E++ GL + G+++ DG + + LA + + ++IILDIMLPG++G+ Sbjct: 148 IHILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIMLPGINGY 207 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH-H 119 ++ ++ +I LTA+D +DDRV+GLD GA+DY++KPFSF ELLAR+ A+LR Sbjct: 208 EVCSEIKKWVNASIIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLRNSLP 267 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 LN + I ++ +H + N + L+ E+ LL L G ++ + I ++WG Sbjct: 268 ELNDVMSIGNFYLNDKAHEIYFKNNLLELSPTEYNLLKYLLFNNGLVLSKPTILEKVWGF 327 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 +F+ D N V+V IR LR K+ D +I T+RG+GY V Sbjct: 328 DFNGDVNIVEVYIRYLRDKIGDN-EHSIIRTVRGVGYKVV 366 >UniRef50_C6VUR1 Two component transcriptional regulator, winged helix family n=3 Tax=Sphingobacteriales RepID=C6VUR1_DYAFD Length = 226 Score = 169 bits (428), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 90/226 (39%), Positives = 136/226 (60%), Gaps = 4/226 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL++ED++R ++T+GL+E GY ++ DG L + L ILD+MLP +DG+ Sbjct: 1 MKILVVEDDERIGSFLTKGLAEVGYFVEWAQDGAMARTLIQDGSWDLFILDVMLPDIDGF 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-- 117 Q+ Q +R K TPV+ L+A DD+++ LD GA+DYL KP F ELL+R+ A R+ Sbjct: 61 QLTQLIRYKKIDTPVLILSALGEADDKIKALDLGADDYLTKPIHFPELLSRINALRRRYD 120 Query: 118 -HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 H++ ++ L + L ++ +H V R I L+ KEF+ L L +++ R+ I + Sbjct: 121 MHYSKDNVLVCADLEVNLDTHLVQRAGKEIVLSAKEFRFLVYLMENQNKVLTRSQILQVV 180 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 W N D+ TN VDV I LR K+D FP+KLI T++G GY + K Sbjct: 181 WSTNMDTYTNVVDVYISYLRNKIDVDFPDKLIRTVKGTGYMIASQK 226 >UniRef50_A4CE30 Probable two-component response regulator transcription regulator protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CE30_9GAMM Length = 227 Score = 169 bits (427), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 97/227 (42%), Positives = 138/227 (60%), Gaps = 5/227 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED+ R ++ +GL GY I DG++GL LA + D+ LI+LDIMLP ++G Sbjct: 1 MRILLVEDDDRVASFLERGLRAEGYFIVRACDGKEGLELAQEGDFQLILLDIMLPSLNGL 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 ++ Q LR K P+I LTA D D ++GL GA+DY+ KPF++ ELLAR+ A R+ Sbjct: 61 EVCQALRIKKNLVPIIMLTAMDESQDIIKGLRLGADDYVTKPFAYDELLARIEAVTRRTP 120 Query: 119 HALNST--LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + + +T LE L D S+ VS DN I+LT KE +L LL + G+ + R I S + Sbjct: 121 NEIKNTNILEFGPLCFDRSSYIVSLDNEEISLTVKEMAILELLMTNTGKYLSRERILSNV 180 Query: 177 WGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAVK 222 WG+ D TN VDV I +LR K+ + E +I T RG+GY V+ Sbjct: 181 WGMEMDPMTNVVDVYIGKLRKKLTIESKGESMIETKRGIGYRLNLVE 227 >UniRef50_D2QPF4 Two component transcriptional regulator, winged helix family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QPF4_9SPHI Length = 223 Score = 169 bits (427), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 134/218 (61%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL+IED ++ ++ QGL + G+V D G +GL Y L++LD+MLPG G+ Sbjct: 1 MKILVIEDERKLARFIKQGLEQHGHVADLTYSGSEGLDHIAGGLYDLVLLDLMLPGQTGF 60 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRA-QLRQH 118 ++LQ LR T PV+ L+A + V+GLD GA DYL KPF F+ELLAR+R Q R Sbjct: 61 EVLQNLRAFGLTVPVMILSALSDPERVVQGLDLGAVDYLRKPFDFNELLARIRVLQRRAT 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + L ++ L M VSH V ++N+ + LT +EF LL LL RAG+++ + IA ++W Sbjct: 121 MGNDVVLRVADLEMRLVSHEVHKNNVHLELTNREFALLELLMRRAGQLVTKNEIAEKVWA 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 ++FD +N ++V I +LR K+D LI T+ G GY Sbjct: 181 MDFDMGSNVIEVHIYQLRKKIDATGIPGLIETLIGRGY 218 >UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YVQ4_9FLAO Length = 224 Score = 169 bits (427), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 135/221 (61%), Gaps = 6/221 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M ILL+ED+QR ++ +GLSEAGY I G L D+ +I++DIMLPG+DG Sbjct: 1 MNILLVEDDQRISNFLIKGLSEAGYNITLADSGEKARELLHTYDFDIILMDIMLPGLDGM 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-- 117 Q+ Q +R TP++ L+A +S DD+++ LD GA+DYL KPF F EL++R++A R+ Sbjct: 61 QLTQIIRFKGNYTPILVLSALNSPDDKIKMLDMGADDYLSKPFHFEELISRIKALTRRNK 120 Query: 118 --HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 + + L + +D+ H V++++ I + E++L L +++ RT I Sbjct: 121 LSYKKEDQYLSCGNITIDTDLHKVTQNDKEIEFSPTEYKLFTFLMENKNKVLSRTQILHN 180 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +WGI+FD+ TN VDV I +R K+D+ +K+I T++G GY Sbjct: 181 VWGIDFDNTTNVVDVYISYIRNKIDET-EQKIIHTVKGTGY 220 >UniRef50_C7PAJ7 Two component transcriptional regulator, winged helix family n=3 Tax=Sphingobacteriales RepID=C7PAJ7_CHIPD Length = 266 Score = 169 bits (427), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 131/221 (59%), Gaps = 6/221 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL++ED + V +GL E G+ +D DGR G LA ++Y L+ILD+ LP +G++ Sbjct: 41 RILVVEDEIKVANTVKKGLEENGFEVDVAYDGRMGKSLAASNNYDLVILDLNLPHANGYE 100 Query: 62 ILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ--- 117 + + +R P+I LTA +DD+++ + GA+DYLVKPF F EL+AR+R L++ Sbjct: 101 VCEVIRRKNNAIPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFLKRAGS 160 Query: 118 --HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 + I L +D V+R I LT KE+QLL LA G++I + VIA + Sbjct: 161 EVQENNQYKIVIGDLEIDREKKEVTRGGKKIALTAKEYQLLEFLALHKGKVISKLVIAEK 220 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +W I+FD+ TN ++V + LR K+D F KL+ T GMGY Sbjct: 221 VWDIDFDTGTNVIEVYMNFLRKKIDKDFDNKLLHTKTGMGY 261 >UniRef50_Q81I47 Two-component response regulator n=76 Tax=Firmicutes RepID=Q81I47_BACCR Length = 232 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 90/220 (40%), Positives = 142/220 (64%), Gaps = 6/220 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++EDN E + Q L + + +D +G DGL+LAL++ Y I+LD+M+PGMDG+ Sbjct: 10 MRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGF 68 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +++Q +R K +TPV+ LTARDS++DRV+GLD G +DY+VKPF EL AR+RA LR+ Sbjct: 69 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 128 Query: 120 ALNS--TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 +L + T+ G+ + V D + L+ K+++LL L +G+I+ R I +W Sbjct: 129 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYELLEYLVQNSGKILMREQIFDRVW 188 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFP-EKLIATIRGMGY 216 G + D+ V+V + LR K+ +PF +K I T+RG+GY Sbjct: 189 GFDSDTTVAIVEVYVHHLRKKL-EPFGYQKDIQTVRGIGY 227 >UniRef50_B4DAQ3 Two component transcriptional regulator, winged helix family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ3_9BACT Length = 230 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 93/222 (41%), Positives = 135/222 (60%), Gaps = 5/222 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL++ED+ R +V +G + GY+ + SDG DGL + ++D+MLP MDG Sbjct: 7 MRILVVEDDSRIASFVAKGFKQNGYLAEISSDGEDGLQKLQTAPFDAAVIDLMLPKMDGL 66 Query: 61 QILQTLRTAKQTPV--ICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ- 117 +++ +R K TPV + L+A+ SV+D+VR L SGA+DYL KPF+ SELLARV A +R+ Sbjct: 67 SLIERIRKGK-TPVAIVVLSAKHSVEDKVRCLRSGADDYLQKPFAISELLARVEAIVRRV 125 Query: 118 -HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 A LE +G+ +D ++H R+ I L +EF LL LL G + + + + Sbjct: 126 SREAEVERLESAGVEIDLLAHIAKREGRRIDLQPREFALLELLVRNRGRALTKMQLLERL 185 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 W +FD TN VDV + RLR K+D F KLI T+RG+GY F Sbjct: 186 WDYSFDPQTNVVDVLVCRLRNKLDRGFDTKLIHTLRGIGYVF 227 >UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax=Actinobacteria (class) RepID=TCRA1_MYCTU Length = 253 Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 91/220 (41%), Positives = 129/220 (58%), Gaps = 2/220 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 ++IL++ED + + + L+E G+ +D V+DGR + DY ++LD+MLPG+DG+ Sbjct: 23 VRILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGF 82 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++ LR + TPV+ LTAR +V DR+ GLD GA+DYL KPF+ EL AR+RA R+ Sbjct: 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142 Query: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 TLE LR+D H V R + I L+ KEF LL L R G + R + W Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +++ +N VDV IR LR K+D PF + TIRG GY Sbjct: 203 AAYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 90/216 (41%), Positives = 130/216 (60%), Gaps = 2/216 (0%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+IED + +V L+ GY + SDG GL A + L++LD MLPG+ G +I Sbjct: 11 ILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISGLEI 70 Query: 63 LQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-HHA 120 + LR T + PV+ +TARD V DR GLD+GA+DY+VKPFS ELL+R+R LRQ + Sbjct: 71 CRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLRQPRRS 130 Query: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 + L L +D V+ V+R + LT KE+ LL L +++ R I +WG + Sbjct: 131 RDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWGCD 190 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 F D+N ++V IR LR K++ P ++LI T+RG+GY Sbjct: 191 FTGDSNIIEVYIRYLRLKIEGPGEKRLIQTVRGVGY 226 >UniRef50_B4U9M6 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9M6_HYDS0 Length = 225 Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 85/217 (39%), Positives = 135/217 (62%), Gaps = 2/217 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 +K L++ED++ E + +G G+ +D DG L A + Y +IILD+++P +DG Sbjct: 3 LKALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKIDGV 62 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 ++ + LR + P+I LTA+ ++D++ GL++GA+DY+ KPFSF EL+ RV+ LR+++ Sbjct: 63 KVCKQLRLQSEIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYNK 122 Query: 121 LN-STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 + + + L MD V +I LT KEF+LL +LA + I R V+ +++WGI Sbjct: 123 VQEEKIVLKDLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWGI 182 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 D D+N VDV I+ +R K++D P KLI TIRG GY Sbjct: 183 ASDYDSNIVDVYIKNIRNKLEDK-PPKLILTIRGRGY 218 >UniRef50_A0LPJ2 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A0LPJ2_SYNFM Length = 263 Score = 167 bits (423), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 92/222 (41%), Positives = 135/222 (60%), Gaps = 3/222 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED+++ +++ + L+EAG+ ID +G G LALK+ Y II+D++LP MDG Sbjct: 32 MRVLVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESYDAIIIDVILPVMDGL 91 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +ILQ LR TPV+ L+A+ SV DRV GL+ G +DYL KPF +ELLARV + +R+ Sbjct: 92 EILQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRRSK 151 Query: 120 ALNSTLEISG--LRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 T+++ L +D VS V R + L +EF LL L G ++ R I +W Sbjct: 152 VNQETVQLKAGDLWLDLVSRRVFRGDEEFRLLPQEFALLEYLMRNKGRVVTRAEILENVW 211 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 G NF TN V+V I RLR K++ P +L+ T R GY+ V Sbjct: 212 GYNFVPATNVVEVHICRLREKLERPNKPRLLQTFRKAGYALV 253 >UniRef50_A5FFW8 Two component transcriptional regulator, winged helix family n=3 Tax=Flavobacteriales RepID=A5FFW8_FLAJ1 Length = 220 Score = 167 bits (423), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 85/217 (39%), Positives = 131/217 (60%), Gaps = 2/217 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M IL++ED +++ QGL E GY I +DG G L + LI+LD MLP ++G Sbjct: 1 MHILIVEDELGIVQFLEQGLREEGYQITTANDGSKGFELTQNHTFDLILLDWMLPKINGL 60 Query: 61 QILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + + +R K+TP+I LTA+D+V + + GL +GANDY+ KPFSF EL+ RV+ R + Sbjct: 61 DLCKAIRIKDKKTPIIFLTAKDTVQETIEGLRAGANDYIKKPFSFEELVERVKIHFR-NK 119 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 A + L + + +D H V +++ I LT++EF+LL L + G++ R I ++W I Sbjct: 120 ATDEILTLGNITVDLSKHIVLKNDEEINLTQREFELLTYLIRKKGKVCTRNEILKDVWDI 179 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 NF+ DT +DV + +R K++ E I TIRG+GY Sbjct: 180 NFEYDTGVIDVFMNAIRKKLNLKIEEDYIKTIRGIGY 216 >UniRef50_Q1AZL3 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=Q1AZL3_RUBXD Length = 227 Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 94/220 (42%), Positives = 135/220 (61%), Gaps = 2/220 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED + +GLS GY + DG GL +AL++D +++LDIMLPG+DG Sbjct: 1 MRVLIVEDEPGIVRMLERGLSAQGYSCLSAEDGETGLRMALEEDVDVVLLDIMLPGLDGR 60 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++L+ LR + PV+ LTARD V+ +V LD+GA+DYL KPF+F ELLAR+RA +R+ Sbjct: 61 EVLRRLRLRRPGLPVLMLTARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALVRRAD 120 Query: 120 ALNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 ST L L++D +S V R + L+ +EF LL L +++ R I S +W Sbjct: 121 QPESTALRAGDLKLDLLSRRVWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILSAVWD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 FD +N VDV +R LR K+D P LI T+RG GY F Sbjct: 181 YAFDPGSNVVDVYVRYLRRKLDRPGEPSLITTVRGAGYRF 220 >UniRef50_A6WIX6 Two component transcriptional regulator, winged helix family n=3 Tax=Bacteria RepID=A6WIX6_SHEB8 Length = 227 Score = 166 bits (420), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 90/224 (40%), Positives = 134/224 (59%), Gaps = 10/224 (4%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M +LL+ED Q+ +++ +GL + + +DG G A + + +IILDIMLPG DG Sbjct: 1 MNVLLVEDEQKIADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGRDGL 60 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 IL++LR TP+I LTAR+ + DRV+GLD GA+DYL KPF EL AR++A LR+H Sbjct: 61 DILRSLRQQGVDTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHG 120 Query: 120 ALNS-TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 +E+ L++D ++ S++ S+ LT +EF LL L +++ R + +WG Sbjct: 121 GTQQHVVEVGALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVWG 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEK------LIATIRGMGY 216 +FD TN VDV I+R+R+K+ EK I +IRG GY Sbjct: 181 YDFDPCTNVVDVCIKRIRSKM--ASLEKAGKMVGAIESIRGTGY 222 >UniRef50_A6M1X5 Two component transcriptional regulator, winged helix family n=8 Tax=Firmicutes RepID=A6M1X5_CLOB8 Length = 229 Score = 166 bits (420), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 134/219 (61%), Gaps = 2/219 (0%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+++D + +++ GL GY++ DG + + LA K + ++ILDIMLPGMDG+++ Sbjct: 11 ILIVDDEKSIVDFIKMGLEGEGYLVYEAYDGNEAIELARKINPNIVILDIMLPGMDGYEV 70 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA-L 121 ++ + +T VI LTA D VDD+V+GLD GA+DY+ KPFSF ELLAR+ A++R L Sbjct: 71 CSIIKKSIKTSVIMLTALDEVDDKVKGLDIGADDYMAKPFSFKELLARINARIRNSFPEL 130 Query: 122 NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINF 181 + I ++D +H ++ + L ++ LL L G + +++I ++WG +F Sbjct: 131 SDITNIGNFKVDDKAHEITYREKVLDLPPTQYNLLSFLLMNNGIALSKSLILEKVWGYDF 190 Query: 182 DSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 + + N V+V IR LR K+ D +I T+RG+GY VA Sbjct: 191 NGEDNIVEVYIRYLRDKIGDK-DHNIIKTVRGVGYKMVA 228 >UniRef50_C7PP48 Two component transcriptional regulator, winged helix family n=20 Tax=Bacteria RepID=C7PP48_CHIPD Length = 235 Score = 166 bits (420), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 90/229 (39%), Positives = 139/229 (60%), Gaps = 13/229 (5%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+LLIED ++ + L+EAGY + DG+ GL +A ++++ LIILD+MLPGM+G Sbjct: 1 MKLLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMATENNFQLIILDVMLPGMNGI 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + + LR + TP++ LTA S ++ V GLDSGA+DYLVKPF +ELLAR+R+ LR+++ Sbjct: 61 AVCKALRQQQLTTPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRRNN 120 Query: 120 ------------ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEII 167 + + L+++ L +D + S SR +I LT E++LL + ++ Sbjct: 121 DTAAAATPAVTQSNGNVLKVADLELDLNTKSASRYGQTIVLTATEYRLLEYMMRNPKRVL 180 Query: 168 PRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 R I +WG++F+ +T VDV + LR KV+ LI T+ GMGY Sbjct: 181 SRMEILENVWGVDFNMNTKVVDVYVNYLRKKVNRKDQPALIQTVVGMGY 229 >UniRef50_Q2SKY7 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=2 Tax=Bacteria RepID=Q2SKY7_HAHCH Length = 223 Score = 166 bits (419), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 97/220 (44%), Positives = 134/220 (60%), Gaps = 2/220 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L+IED + ++ + GL +AGYV+DA +DG +GL+LA + Y LIILDIMLP M+G+ Sbjct: 1 MRLLVIEDAEILRQSLVIGLGDAGYVVDAAADGEEGLWLASEQGYDLIILDIMLPHMNGF 60 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++L LRT + V+ LTARD V+DRV GL SGA+DYLVKPF F ELLAR+ A LR+ Sbjct: 61 ELLDRLRTLGADSLVLMLTARDEVEDRVLGLRSGADDYLVKPFDFDELLARIEALLRRRA 120 Query: 120 ALNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 S LEI L ++ S VS + ++L +E+ LL LA ++ R I +I+ Sbjct: 121 GCASNLLEIGELTINLHSKQVSVSGVPVSLPPREYALLECLALNRHRVVSRQEIEHKIYD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 + +N VD AI LR +D I T RG GY Sbjct: 181 DKIEPMSNVVDSAISSLRKMIDHKDRPSFILTRRGHGYQI 220 >UniRef50_A6CDX9 Two component transcriptional regulator, winged helix family protein n=2 Tax=Bacteria RepID=A6CDX9_9PLAN Length = 231 Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 93/217 (42%), Positives = 136/217 (62%), Gaps = 3/217 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL++ED R +++ +GLSE GY ++ DGR G L + + L+ILD LP DG Q Sbjct: 4 RILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVEDGIQ 63 Query: 62 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-HH 119 +L+ R + TPV+ LTARD+V +RV GLD+GA+DYL KPF+F ELLARVRA LR+ Sbjct: 64 LLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRRPGQ 123 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 A LE + +R D + V+R + LT KEF LL G+++ RT I +W Sbjct: 124 ASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIYDTVWDD 183 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 ++D +NT++V ++ LR K++ P ++I T+RG GY Sbjct: 184 SYDGLSNTLEVHVKELRHKLEACGP-RVIQTLRGRGY 219 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 165 bits (417), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 90/216 (41%), Positives = 134/216 (62%), Gaps = 2/216 (0%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL++ED + +++ L GY + V+DG GL A + + LI+LD MLPG+ G I Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 63 LQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + LR T + P+I LTA+D + DRV GLD+GA+DY+VKPF+ ELLARVRA LR++H Sbjct: 66 CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNHEE 125 Query: 122 NS-TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 + L+ L ++ + V R + I LT KEF LL L S +++ R I +WG + Sbjct: 126 DPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWGYD 185 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 F D+N ++V +R LR K++ ++LI T+RG+GY Sbjct: 186 FMGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGY 221 >UniRef50_B1ZVS5 Two component transcriptional regulator, winged helix family n=3 Tax=Chlamydiae/Verrucomicrobia group RepID=B1ZVS5_OPITP Length = 228 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 89/224 (39%), Positives = 136/224 (60%), Gaps = 7/224 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED+ + +V +GL + GY +D DG GL LA Y ++DIMLP +DG Sbjct: 6 MRVLVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALATSTAYDAAVVDIMLPELDGL 65 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +++ LR + PV+ L+AR SV+DRV+GL +G +DYL KPF+F+EL AR++A +R+ Sbjct: 66 SLVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRAS 125 Query: 120 ALNSTLEISG--LRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 +S + +D VS +V+ + L +EF LL L AG + + +I +W Sbjct: 126 RSPEATRLSAGDVTLDLVSRTVTVGGQPVELQPREFSLLEYLLRHAGRPVTKVMILEHVW 185 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKL-IATIRGMGYSFVA 220 +FD TN VDV + RLR+K+D P+K I T+RG+GY F A Sbjct: 186 DYSFDPQTNVVDVLMSRLRSKID---PDKTRIETLRGVGYVFKA 226 >UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 Tax=Rhodothermaceae RepID=Q2RYR0_SALRD Length = 247 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 90/225 (40%), Positives = 134/225 (59%), Gaps = 3/225 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +LL+ED +V QGL+E GY + V GR GL A + L++LDI LP + G + Sbjct: 6 HLLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGIDLVLLDIRLPDLSGLE 65 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ--H 118 + + LR + + P++ LTA D+V+DRVRGL +GA+DYL KPF+F ELLAR+ A LR+ Sbjct: 66 VCERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRRVDR 125 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + +E L +D + + + D + LT EF LL L +R G+ + R I E+WG Sbjct: 126 PSEPGRVEDGPLVLDPAARTCTFDGEEVDLTPTEFDLLAFLMARHGQALSRDTIHQEVWG 185 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 +FD TN +DV + +R K+D+ E I T+RG+GY + A + Sbjct: 186 HDFDRGTNLIDVYVNYVRRKLDEVGCEAPIETVRGIGYRYTACSE 230 >UniRef50_B4WME0 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WME0_9SYNE Length = 236 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 88/232 (37%), Positives = 134/232 (57%), Gaps = 14/232 (6%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M +L ED + +V GL E G+V++ G A++++Y +I+LDIM+PG DG Sbjct: 1 MHVLFAEDEPKIASFVQIGLKEQGFVVEYCDHGDIAYEKAIQNEYDVILLDIMMPGKDGL 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 IL+ LR + TPVI LTARD +DDR++GL+ GA+DY+ KPF EL+AR+ A +R+ Sbjct: 61 FILKNLRQVGRNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRRSA 120 Query: 120 ALNSTLEISG-LRMDSVSHSVSRDNIS------------ITLTRKEFQLLWLLASRAGEI 166 L G ++D ++ +V+ + + + LT +EF LL L G + Sbjct: 121 GEQPNLVTVGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPGRV 180 Query: 167 IPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 RT + +WG +F+ TN VDV I+RLR K+D E+ I ++RG+GY F Sbjct: 181 FTRTQMLEHVWGYDFNPSTNVVDVCIQRLRKKIDMKGNERWIESVRGVGYRF 232 >UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepID=ARLR_STAAN Length = 214 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 87/215 (40%), Positives = 131/215 (60%), Gaps = 6/215 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL++ED Q ++ L+ Y +D DG+DGL AL Y LIILD+MLP ++G + Sbjct: 3 QILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLE 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 I + +R + TP+I +TA+ D+V GLD GA+DY+VKPF ELLAR+RA LR+ Sbjct: 63 ICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQPQ- 121 Query: 122 NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINF 181 ++++G + V+ + I LT+ E+ LL+LLA ++ R I + +WG N Sbjct: 122 KDIIDVNGTLL-----KVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGYNS 176 Query: 182 DSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 + +TN VDV IR LR K+ +K+I T+RG+GY Sbjct: 177 EVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGY 211 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 97/232 (41%), Positives = 139/232 (59%), Gaps = 16/232 (6%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL+++D +E ++ L ++GY ++ +DGR L A + D L++LDIMLP +DG Sbjct: 1 MQILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEAD--LVLLDIMLPEVDGL 58 Query: 61 QILQTLRTAKQT---PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 ++ + L+ QT P+I LTA+ DRV GL+ GA+DY+VKPFS ELLARV+A LR+ Sbjct: 59 EVCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRR 118 Query: 118 HHALN----------STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEII 167 ++ +L I GLR+D S+ + +I LT KE++LL LL + G Sbjct: 119 SASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAF 178 Query: 168 PRTVIASEIWGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSF 218 R + IWG + DT TVDV IR LRAK+ DDP I T+RG+GY F Sbjct: 179 SRDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRF 230 >UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZDC3_BREBN Length = 231 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 88/217 (40%), Positives = 124/217 (57%), Gaps = 1/217 (0%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +LL+ED ++ L G+ D DG GL AL +Y LI+LD+MLP + G ++ Sbjct: 13 LLLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIEYDLILLDVMLPELSGIEL 72 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA-L 121 + +R K P+I +TAR V D V GLDSGANDYL KPF+ EL AR+R LRQ + Sbjct: 73 CRRIRETKDVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLRQRESKA 132 Query: 122 NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINF 181 N + + LR+ + V D I LT +EF LL+ + + + R I + +WG +F Sbjct: 133 NQEIVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWGFDF 192 Query: 182 DSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +TN VDV IR LR K++ KLI T+RG+GY+ Sbjct: 193 MGNTNIVDVYIRYLRNKIESDPSVKLIHTVRGIGYTL 229 >UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepID=A5EYW4_VIBC3 Length = 224 Score = 164 bits (415), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 94/220 (42%), Positives = 129/220 (58%), Gaps = 5/220 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILLIED++R ++ +GL G+ I + DG+ GL + L+ILD MLP +DG Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR--- 116 + Q +R T Q ++ L+A V++R++GL +GA+DYL KPF F ELLAR+ A R Sbjct: 61 TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 117 QHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 Q H N L + L + + V R I LT KE +L L + G I R I + + Sbjct: 121 QTHTSNK-LRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANV 179 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 WGI+ D TN VDV +RRLR K+D PF + LI T RGMGY Sbjct: 180 WGIHQDPLTNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGY 219 >UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QL69_DESAH Length = 232 Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 93/222 (41%), Positives = 135/222 (60%), Gaps = 7/222 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M IL+++D+ + + + L Y I+ +G L + Y LI+LDIMLP MDG Sbjct: 6 MNILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPLMDGL 65 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +L+ +R A TPV+ LTAR V+DRV+GLD GA+DYL KPFS +EL+AR+RA LR+ Sbjct: 66 SVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRRDG 125 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 ++ L L ++++S +V+ DN I+LT KEF +L L G + R +A +WG Sbjct: 126 KRDTILTAGPLSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNMAEHVWGN 185 Query: 180 NFD--SDTNTVDVAIRRLRAKVDDP---FPEKLIATIRGMGY 216 FD S +N VDV I+ LR K+ P +P +I TIRG+G+ Sbjct: 186 EFDPFSMSNFVDVHIKNLRKKISPPGDKYP-PIIRTIRGIGF 226 >UniRef50_Q2NSR4 Putative two-component regulator protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NSR4_SODGM Length = 168 Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 78/166 (46%), Positives = 117/166 (70%), Gaps = 2/166 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL+I+D + +E++ GL+E+GYV+D +GR+G+++A + Y LI+LD+M+P ++GW Sbjct: 1 MKILVIDDEPKAREYMRSGLTESGYVVDVAVNGREGVFMAEEYYYDLILLDVMMPELNGW 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ--H 118 ++++TL + TPVI LTA+ +VDDR++GL+ GA+DYLVKPFSF+ELLAR+R LR+ + Sbjct: 61 EVMKTLDSLLDTPVIFLTAKSTVDDRIKGLELGADDYLVKPFSFAELLARIRTALRRGMN 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAG 164 L ++ LR+D V R + I LT KEF LL L S G Sbjct: 121 GKREELLTVADLRLDIAKRRVERSGLRINLTNKEFNLLQLFISNPG 166 >UniRef50_UPI00017468BB two component transcriptional regulator, winged helix family protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017468BB Length = 227 Score = 164 bits (414), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 88/218 (40%), Positives = 133/218 (61%), Gaps = 5/218 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED+ + + L E Y +DA DG +G AL+++Y +I+LD+MLPG+ GW Sbjct: 12 MRVLVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEYDVIVLDVMLPGLSGW 71 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + LQ LR K +PV+ LTARD+V DRV+GL+ GA+DYL KPF ELLAR+RA +R+ Sbjct: 72 EFLQKLRPTKTSPVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRAAG 131 Query: 121 L-NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 L I L +D+ + V + +T +E+ L+ LA GE++ RT + ++ Sbjct: 132 QPQPVLTIRDLSIDTAARKVLWKGEEVPVTAREYTLIEYLALHQGEVVSRTTLYEHLFDE 191 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 + + +N +DV + LR K+ PE LI T RG GYS Sbjct: 192 DDSTLSNLLDVHVSNLRKKL---APE-LITTRRGHGYS 225 >UniRef50_D2QX61 Two component transcriptional regulator, winged helix family n=3 Tax=Planctomycetaceae RepID=D2QX61_9PLAN Length = 223 Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 91/218 (41%), Positives = 135/218 (61%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+L+IED+ + + +GLSEAG+ G+ GL A + ++LD+MLP G Sbjct: 1 MKLLVIEDDPVLGKALERGLSEAGHFCQWERTGKSGLEQASTQQFDALVLDVMLPDTTGM 60 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRA-QLRQH 118 ++++ +R TPV+ LTA SVDDRV GL+SGA+DYLVKPF+F ELLAR+ A R Sbjct: 61 EVVRKIRHDGIGTPVLMLTALGSVDDRVAGLNSGADDYLVKPFAFPELLARLDAISRRTK 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 +S L++ L +D + V+R++ ++LT EF LL L AG+++ R ++ +W Sbjct: 121 DRPSSQLKVGPLVLDLTNRKVTRNDSELSLTPTEFSLLEFLMRYAGQVVTRKMLCEHLWE 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +++ TN V+V I RLR K+D F E LI T+RG GY Sbjct: 181 SDWEGVTNVVEVHINRLRGKIDRGFSEPLIQTVRGRGY 218 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 162 bits (411), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 91/224 (40%), Positives = 131/224 (58%), Gaps = 6/224 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 ILL++D Q ++V+ L +AGY +D +G L ++ Y L +LDIM+PGM+G+++ Sbjct: 8 ILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNGYEL 67 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH--- 119 + LRT PV+ L+ARDS D+V GL+ GA+DYL KPF EL+ARVRA LR+ Sbjct: 68 CRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRGQMDA 127 Query: 120 --ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 ++ G+ +D H N SI LT +EF+LL L AG++ R + E W Sbjct: 128 EPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASREDLLREAW 187 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDP-FPEKLIATIRGMGYSFVA 220 G + ++T TVD I+RLR K+ F +I T+RG GY F A Sbjct: 188 GWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRFRA 231 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 162 bits (411), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 138/234 (58%), Gaps = 15/234 (6%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D ++ L +AGY + +DG D L L L + I+LD+MLP +DG + Sbjct: 5 KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ--- 117 + + LR K QTP+I +TA++ D+V GL+ GA+DY+ KPFS E+LAR++A +R+ Sbjct: 65 VTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTTP 124 Query: 118 ----------HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEII 167 A + + + L++D + V+R+ +I+LT KEF+LL R G ++ Sbjct: 125 DEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVL 184 Query: 168 PRTVIASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVA 220 R I + +WG ++ S+T VD+ I LR K++ DP +LI T+RG GY FV Sbjct: 185 SRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFVG 238 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 162 bits (410), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 132/223 (59%), Gaps = 7/223 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+IED+ + + L G+ + DG++GL +A Y +I+LD+MLP M G + Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH-- 119 + + +R Q P+I LTA+D + D+V G D GA+DY+ KPFS ELLAR++A LR+ Sbjct: 64 VCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKKS 123 Query: 120 -ALNSTLEISGLRMDSVSHSVSRD---NISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 E L ++ ++ V RD N+ I L+++EF+LL L G ++ R I E Sbjct: 124 VVHKGIFEFEDLTINYSTYEVFRDYGKNL-IQLSKREFELLDFLVLNKGIVLSRDKILEE 182 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +WG ++ + N +D+ I+ LR K+D P+ K I T+RG+G+ F Sbjct: 183 VWGFDYIGNDNILDLYIKYLRDKIDRPYERKFIQTVRGIGFIF 225 >UniRef50_Q47744 Regulatory protein vanRB n=13 Tax=Bacteria RepID=VANR_ENTFA Length = 220 Score = 162 bits (409), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 86/216 (39%), Positives = 125/216 (57%), Gaps = 4/216 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 ++ILL+ED+ V L+EA Y +DA +DG + ++ Y L+ILDIMLPGM+G Sbjct: 3 IRILLVEDDDHICNTVRAFLAEARYEVDACTDGNEAHTKFYENTYQLVILDIMLPGMNGH 62 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 ++L+ R TP++ +TA ++++R D+ A+DY+ KPF LL RV A LR+ A Sbjct: 63 ELLREFRAQNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMRILLKRVEALLRRSGA 122 Query: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 L + L + V D + LTRKEF++L LL G + +I S IWG + Sbjct: 123 LAKEFRVGRLTLLPEDFRVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWGYD 182 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 FD D +TV I+ LRAK+ PE +I TIRG+GY Sbjct: 183 FDGDGSTVHTHIKNLRAKL----PENIIKTIRGVGY 214 >UniRef50_C6LI81 DNA-binding response regulator DltR n=2 Tax=Clostridiales RepID=C6LI81_9FIRM Length = 248 Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 91/222 (40%), Positives = 130/222 (58%), Gaps = 4/222 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M IL+IED QE + L + GY D SDG GL LAL D Y +I+LD+MLPG+ G+ Sbjct: 20 MNILIIEDELHLQEALAASLKKEGYQTDCASDGISGLELALSDRYDVILLDLMLPGLGGY 79 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 Q+L+ LR K ++ VI L+A+ ++D++ GLD GA+DYL KPF EL AR+RA R+H Sbjct: 80 QVLKQLRREKTESAVIILSAKSELEDKIAGLDFGADDYLTKPFQMKELFARIRAVTRRHG 139 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLT--RKEFQLLWLLASRAGEIIPRTVIASEI 176 + L L ++ + ++S S TLT KEFQL+ L ++I R+ I +I Sbjct: 140 EVVRDELVFQDLYLNIRTFTLSSSATSHTLTLGSKEFQLMEYLMRNPKQVISRSRITEKI 199 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 WG + + + N VDV I LR K+ I +RG+GY+ Sbjct: 200 WGYDSEVEYNNVDVYISFLRKKLKHTGAHVEIRAVRGIGYTL 241 >UniRef50_D0KHV6 Two component transcriptional regulator, winged helix family n=6 Tax=Gammaproteobacteria RepID=D0KHV6_PECWW Length = 242 Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 92/227 (40%), Positives = 136/227 (59%), Gaps = 5/227 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDD-YALIILDIMLPGMDG 59 M++L+++D+ W+ L G+ V DG L A+KD+ Y +++LD MLP MDG Sbjct: 7 MRVLVVDDDSVLCHWLGSKLHSHGHSCRMVHDGAHALK-AIKDEVYDVVLLDRMLPIMDG 65 Query: 60 WQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLAR--VRAQLRQ 117 + +L+ L+ ++ P++ L+A D DRV GL+ GA DYL KPF+F+EL R + A+ + Sbjct: 66 FTVLRELQGSRHPPIMLLSALDRDVDRVMGLELGAEDYLGKPFNFNELRLRLDIMARRGK 125 Query: 118 HHALN-STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 HA N S L L++D + R + I LT KE +LL +L G+ I RT++ + Sbjct: 126 RHADNPSILTFEDLQLDRMQRVAWRGSKRIDLTDKEIKLLIILMENPGQAITRTMLLERV 185 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 WG NFD TN +DV + +LRAK+D FP LI T+R MGY+ AV K Sbjct: 186 WGYNFDPQTNLIDVHMSKLRAKIDKGFPRPLIKTLRAMGYALGAVDK 232 >UniRef50_C1SIE7 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIE7_9BACT Length = 240 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/220 (40%), Positives = 137/220 (62%), Gaps = 5/220 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL+++D + + + L ++ Y +D G GL ++Y+LIILD+MLP MDG+ Sbjct: 14 MKILIVDDEVQLVDELKSILEKSKYSVDTAVSGDSGLDKIFDNEYSLIILDVMLPVMDGF 73 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 IL+ +R A TPV+ LTA+ V DR++GLD G++DYLVKPF+ SELLARVRA LR+ + Sbjct: 74 CILEAVREASITTPVLMLTAKSDVSDRIKGLDKGSDDYLVKPFAVSELLARVRALLRRDN 133 Query: 120 A-LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 N L+++ + +++VS V +D + LTRKE+ + L ++ + +A +WG Sbjct: 134 LDKNPFLKVADIVLNTVSCDVVKDGHPLKLTRKEYMVFEYLLYNKNRVVTKAALAGHVWG 193 Query: 179 INFD--SDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 FD + +N +DV I+ LR K+ D +I T RG+GY Sbjct: 194 DEFDEFNASNFIDVHIKNLRKKIGDE-NHLIIRTKRGIGY 232 >UniRef50_Q12PS6 Two component transcriptional regulator, winged helix family n=79 Tax=Proteobacteria RepID=Q12PS6_SHEDO Length = 243 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/218 (40%), Positives = 134/218 (61%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++LL+ED+ Q+ + Q L A Y +D SDG GLY L+ Y I+DI LP +DG Sbjct: 1 MRLLLVEDDIALQQNLKQHLQNANYSLDIASDGELGLYQGLEFPYDAAIIDIGLPKLDGI 60 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +++TLR + + P++ LTARDS D+V GLD+GA+DYL KPF ELLAR++A +R+ Sbjct: 61 SLIKTLRERQVSYPILVLTARDSWQDKVSGLDAGADDYLTKPFHPEELLARMKALIRRAA 120 Query: 120 ALNSTLEISG-LRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 S+L +G ++ S V R + + L+ E++L L GE+ ++V+ I+ Sbjct: 121 GKASSLVSNGPFSVNLTSLEVKRHEVLVNLSSSEYKLFEFLMLHPGEVQSKSVLTEHIYD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +FD D+N ++V IRRLR K+D +LI T+RG GY Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPDNQYQLIETLRGQGY 218 >UniRef50_B1ZS16 Two component transcriptional regulator, winged helix family n=3 Tax=Verrucomicrobia RepID=B1ZS16_OPITP Length = 265 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/223 (39%), Positives = 138/223 (61%), Gaps = 8/223 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGY---VIDAVSDGRDGLYLALKDDYALIILDIMLPGM 57 MKIL++ED +R ++V + L+E Y ++ ++ RD L + + ++LD+ LP Sbjct: 45 MKILVVEDERRVGQFVEKALTEQNYTARLVRTCAEARDVL---AESTFDAVVLDLGLPDG 101 Query: 58 DGWQILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR 116 DG +L+ R + PV+ L+ARD+V DRVRGL+ GA+DYL KPFS E++ARVR+ LR Sbjct: 102 DGLDLLREWRASGFNEPVLVLSARDAVGDRVRGLNMGADDYLPKPFSVDEVVARVRSLLR 161 Query: 117 QHHALNSTLEISG-LRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 +H + +T+ G +RMD + SV+ + LT +E+ LL L ++ RT+IA + Sbjct: 162 RHAGVKTTVLTHGPVRMDLLGRSVTCAGRPVELTSREYALLELFLQNPRRVLTRTLIAEK 221 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +W ++D +TN +DV +RRLR K++ P LI TIRG GY Sbjct: 222 VWEASYDLETNLIDVYVRRLRQKLEAPGQPPLIKTIRGTGYQL 264 >UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax=Proteobacteria RepID=A9H3V0_GLUDA Length = 258 Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 84/217 (38%), Positives = 131/217 (60%), Gaps = 2/217 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++LL+ED+ + + V + L G+ + G DGL + + ++I+D MLP MDG Sbjct: 36 RVLLVEDDGKIAQEVAEELESRGFRVSRAETGPDGLSAGISGLFDVMIVDRMLPEMDGLT 95 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 ++++LR + TPV+ L+A +VDDRV GL +G +DYL KPF+ EL AR+ A +R+ + Sbjct: 96 LIESLRGRQVSTPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARIEALMRRPNN 155 Query: 121 LNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 T L + L MD + +V+RD I L +EF+LL L R +++ RT++ ++W Sbjct: 156 TRETMLHVGPLSMDLIERTVTRDGEPIDLLPREFRLLEYLMRRPNQVLTRTMLLEDVWNY 215 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 F TN VDV I +LR K+DDP + LI +IRG G+ Sbjct: 216 RFIPQTNLVDVHIGKLRRKIDDPGAQPLIQSIRGTGF 252 >UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=B9KBQ0_THENN Length = 233 Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 80/218 (36%), Positives = 132/218 (60%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++LL+ED + + + + L + + +D DG +G+Y+AL +D+ ++ILD++LP DGW Sbjct: 11 MRVLLVEDEKDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEDFDVVILDVLLPVHDGW 70 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 +IL+ +R TPV+ LTA V+ RV+GL+ GA+DYL KPF EL+ARV+A +R+ Sbjct: 71 EILKAMREKGINTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVKALIRRKA 130 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 N L L +D+ + V R I LT+KE+Q+L L ++ + + +W Sbjct: 131 ENKNVKLVCGDLILDTATRKVFRGGKEIDLTKKEYQILEYLMMNKNRVVTKEELQEHLWS 190 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 + ++T+ I+ LR K+D F +K+I T+RG+GY Sbjct: 191 FDDTVFSDTLRSHIKNLRKKIDRGFKKKIIHTVRGIGY 228 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 132/229 (57%), Gaps = 13/229 (5%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL+++D R + + L + I S+G++ LA++++YA I+LD+MLP MDG Q Sbjct: 4 EILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQ 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR----- 116 + LR KQTP+I LTA+ +RV G +SGA+DY+VKPFS E++ RV+A LR Sbjct: 64 VATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQST 123 Query: 117 -----QHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTV 171 + HA +E L +D+ +H V DN + LT KE++LL LA ++ R Sbjct: 124 TVEQSEPHA-RDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQ 182 Query: 172 IASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPE--KLIATIRGMGYSF 218 + E+W F D TVD ++RLR K++ E +I T+ G+GY F Sbjct: 183 LLKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKF 231 >UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteobacteria RepID=A4VI02_PSEU5 Length = 234 Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 91/218 (41%), Positives = 133/218 (61%), Gaps = 6/218 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED++ E + L GY +D + DG L+ + + L+ILD+ LP +DG Sbjct: 16 MRILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGL 75 Query: 61 QILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-H 118 ++L+ LR A PV+ LTARD+ DR+ GLD+GA+DYLVKPF +EL AR+RA LR+ Sbjct: 76 ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 135 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + LE G+ +D V+ VS I L RKEF LL L ++ G ++ R + ++G Sbjct: 136 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 195 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 + D ++N ++V I LR K FPE LI T+RG+GY Sbjct: 196 WDEDVESNALEVHIHHLRKKF---FPE-LIRTVRGVGY 229 >UniRef50_Q8A9Y3 Two-component system response regulator n=8 Tax=Bacteroidales RepID=Q8A9Y3_BACTN Length = 245 Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 85/218 (38%), Positives = 129/218 (59%), Gaps = 3/218 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KILL ED ++ +GL E G+ + DG G + ++ + L+ILDI++P ++G + Sbjct: 24 KILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMPKINGLE 83 Query: 62 ILQTLRT--AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 + R Q PVI LTA + +D V+GLD+GA+DYLVKPFSF EL AR++A LR++ Sbjct: 84 LCHLYRQMFGYQAPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 143 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + + L L +D + R + I LT KE++LL + G + R + ++W Sbjct: 144 ETVTNQLTCDNLVLDCNTRRAKRGDADIDLTVKEYRLLEYFMTHQGVALSRITLLKDVWD 203 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 NFD++TN VDV + LR K+D F +KLI T+ G+GY Sbjct: 204 KNFDTNTNIVDVYVNYLRVKIDRDFDKKLIHTVVGLGY 241 >UniRef50_A0R7V0 Two component transcriptional regulator, winged helix family n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A0R7V0_PELPD Length = 224 Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 88/219 (40%), Positives = 134/219 (61%), Gaps = 3/219 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK LLIED ++ ++ +GL E + V DG +GL LA +YAL+ILD+ +P +DG Sbjct: 1 MKYLLIEDERKIAGFIKRGLEEGNCQVVIVGDGAEGLRLAQTGEYALVILDLGIPEIDGL 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +L+ LR T Q PV+ LTAR ++ V GL++G++DY+ KPF+F EL AR+ A LR+ Sbjct: 61 SVLKELRSTGNQVPVLILTARKLPEEVVAGLEAGSDDYMGKPFAFRELRARIAALLRRAG 120 Query: 120 ALNSTLEISG-LRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + + G L++D V+H R I+L+ KE+ L+ + +I+ R++IAS W Sbjct: 121 RNRGSEVVFGELKLDPVTHRFWRSGNEISLSEKEYCLMEYMIRNPNQILTRSMIASNCWV 180 Query: 179 INFDSD-TNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 F+ +N +DV + LR KVD +P K+I T+RG GY Sbjct: 181 NTFEGKFSNIIDVYVTYLRRKVDVGYPTKMIHTVRGKGY 219 >UniRef50_A5WEA6 Two component transcriptional regulator, winged helix family n=4 Tax=Gammaproteobacteria RepID=A5WEA6_PSYWF Length = 231 Score = 160 bits (404), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 131/223 (58%), Gaps = 5/223 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+IEDN V GY +D +G GL LA ++ Y +I+LD+MLPGMDG Q Sbjct: 3 KILIIEDNPDIVANVYAFFEPKGYQLDNAHNGPSGLTLAAENTYDVILLDVMLPGMDGTQ 62 Query: 62 ILQTLRTA--KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + + LR +TPV+ LTARD++ D+V G DSGA+DYLVKPFS EL RVRA +R+H Sbjct: 63 LCKALREKLHNKTPVLMLTARDTLSDKVAGFDSGADDYLVKPFSLVELEVRVRALIRRHQ 122 Query: 120 A--LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 +++ L ++ H+ RD+I + LT F++L L I+ ++ + ++W Sbjct: 123 GEFFEQDIKLGPLTLNIEKHTAYRDDIPLKLTPTGFKILQTLMQSYPNIVSKSELEEKVW 182 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 G + +++ + + +R +VD PF ++ T+ G+GY ++ Sbjct: 183 GEDL-PNSDALRTHLHSVRTQVDKPFDHAMLITVPGVGYQMIS 224 >UniRef50_C0Z6J5 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z6J5_BREBN Length = 231 Score = 159 bits (403), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 132/222 (59%), Gaps = 8/222 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M ILL+ED+ + + LS+ + ++ V+D + + Y L ILD M+ G Sbjct: 1 MHILLVEDDPKLGPLIRYKLSQEYHTVEWVADPELVMEYVQQTYYDLYILDWMMQKKSGL 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-- 117 ++ + +R + QTP++ LTARD++DDRV GL+ GA+DYL+KPF+F EL AR+ A R+ Sbjct: 61 ELCEEIRASNDQTPILMLTARDAIDDRVTGLNRGADDYLIKPFAFEELFARIHALTRRIP 120 Query: 118 ---HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 H T E +G+ +D ++H V R+ +TLT+KEFQLL +++ R I + Sbjct: 121 VSMHQ--EQTCEYAGITLDRLTHEVYREGQLLTLTKKEFQLLDFFLRHTEKVLTRDQIVN 178 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +WG++ N VD AI+ LR KVD+ F KLI +RG+GY Sbjct: 179 YVWGLDATITPNAVDAAIKLLRKKVDEGFSHKLIHNVRGVGY 220 >UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID=ARLR_STAS1 Length = 220 Score = 159 bits (401), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 86/216 (39%), Positives = 128/216 (59%), Gaps = 3/216 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL++ED Q ++ L Y +D DG+ GL AL + Y LI+LD+MLP ++G + Sbjct: 3 KILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLMLPNINGLE 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 I + +R + TP+I +TA+ D+V GLD GA+DY+VKPF ELLAR+RA LR+ Sbjct: 63 ICRQIRQNQTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLRRQPQK 122 Query: 122 NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINF 181 N + + V+ D + LT+ E+ LL+LL ++ R I +++WG + Sbjct: 123 NLIDIKGIIID-KDAFKVTVDGQPLDLTKTEYDLLFLLVENRNHVLQREQIITDVWGYDT 181 Query: 182 DSDTNTVDVAIRRLRAKVDDPF-PEKLIATIRGMGY 216 + +TN VDV IR LR K+ PF +K I T+RG+GY Sbjct: 182 EVETNVVDVYIRYLRNKL-KPFGKDKCIETVRGVGY 216 >UniRef50_UPI0001745DFF Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745DFF Length = 231 Score = 159 bits (401), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 91/218 (41%), Positives = 130/218 (59%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L IED R ++ V + L+ G+ +D S +G LA Y +ILDIMLPG G Sbjct: 1 MRLLFIEDATRLRKTVARALTRLGHAVDEASSAEEGAQLAELAAYDAVILDIMLPGQSGL 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++L T R + TPV+ LTA DSV+DRVRGL +GA+DYL+KPF+ EL AR+ A +R+ H Sbjct: 61 ELLATWRQQQVDTPVLLLTALDSVEDRVRGLVTGADDYLIKPFAIIELAARLEALVRRRH 120 Query: 120 A-LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 +S + + L +D + +VSR +TLT +EF LL LA G+I R I + ++ Sbjct: 121 GKPDSRIRVGPLEIDFAARTVSRLGNPVTLTAREFALLDCLARHPGQIFSREQIEARLYS 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +N VD A+ LR K+ P +LI T RG+GY Sbjct: 181 ETDSPLSNAVDTAVYSLRRKLSPPGVPQLIHTRRGLGY 218 >UniRef50_A5N1L7 Predicted transcriptional regulator n=8 Tax=Bacteria RepID=A5N1L7_CLOK5 Length = 228 Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 93/219 (42%), Positives = 125/219 (57%), Gaps = 3/219 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL++ED + E V Q L Y +D +G GL L Y +IILDIMLP MDG Sbjct: 1 MRILMVEDEKYMAEAVAQILKRNHYSVDLEYNGESGLDCGLSGIYDIIILDIMLPKMDGI 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +L+ LR +TPVI LTA+ +D+VRGLDSGA+DYL KPF ELLAR+RA R+ Sbjct: 61 SLLKELRRNGIETPVILLTAKGETEDKVRGLDSGADDYLAKPFEAEELLARLRALGRRKS 120 Query: 120 AL--NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 L L+ +++D ++ +S LT KE QLL LL G II + VI ++W Sbjct: 121 ELVNEGILKYGDMKLDPLNLRLSCRKQEFKLTLKECQLLELLIKGKGIIISKNVIVEKLW 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 G D + N V+V + LR K+ + I T+RG GY Sbjct: 181 GYETDVEYNNVEVYVSFLRKKLRNIKSNVFIQTVRGAGY 219 >UniRef50_C3QD36 Two-component system response regulator n=8 Tax=Bacteroides RepID=C3QD36_9BACE Length = 228 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 88/219 (40%), Positives = 125/219 (57%), Gaps = 5/219 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+IED R + GL E GY DG GL L + L+I DI+LP MDG+++ Sbjct: 4 ILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFEL 63 Query: 63 LQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ---- 117 + +R T P++ LTA S +D++ G D+GA+DY+VKPF F EL AR++ L++ Sbjct: 64 AKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRVTGN 123 Query: 118 HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 L L + LR+D V R+ ISI L+ KE+ LL + A ++ R IA ++W Sbjct: 124 AQELPQELVYADLRIDLQRKDVERNGISIKLSPKEYNLLLYMVENAERVLSRVEIAEKVW 183 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +FD+ TN +DV I LR K+D F KLI T GMG+ Sbjct: 184 NTHFDTGTNFIDVYINYLRKKIDRDFEPKLIHTKAGMGF 222 >UniRef50_A5FBX2 Two component transcriptional regulator, winged helix family n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FBX2_FLAJ1 Length = 223 Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 138/221 (62%), Gaps = 7/221 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M +LLIED++R E++ +GL E + + G L ++ + +I++DIMLPG+DG Sbjct: 1 MNVLLIEDDKRISEFIIKGLEENNFTVHLAETGEMARDLVQENTWDIILMDIMLPGIDGI 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-- 117 Q+++ +R K TP++ L+A + DD+V LDSGA+DYLVKPF F EL++RV A R+ Sbjct: 61 QLVKLMRFKKIHTPILILSALSNTDDKVTALDSGADDYLVKPFHFKELISRVNALTRRTK 120 Query: 118 -HHALNSTLEISG-LRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 ++ TL G L ++ H V+ ++ I L+ +E++LL L +++ RT I + Sbjct: 121 FNYNEPETLYTCGTLTINPDEHKVTENDKLIDLSPREYKLLLYLLENRNKVMSRTQILTA 180 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +WGIN+D++TN VDV I LR K++ K I TI+G+GY Sbjct: 181 VWGINYDNNTNVVDVYISYLRNKIE--HNHKFIHTIKGIGY 219 >UniRef50_A1SID6 Two component transcriptional regulator, winged helix family n=1 Tax=Nocardioides sp. JS614 RepID=A1SID6_NOCSJ Length = 228 Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 91/221 (41%), Positives = 134/221 (60%), Gaps = 7/221 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKD---DYALIILDIMLPGM 57 M+IL+ ED+ R + + + L+EAG+ ++ DGR L D D AL LD MLPG+ Sbjct: 1 MRILVAEDDVRLADVLEESLAEAGWQVEVAHDGRSAYERLLSDSSLDVAL--LDWMLPGL 58 Query: 58 DGWQILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR 116 DG + + LR P++ LTAR V DRV GLD+GA+DYL KPF ELLAR+RA R Sbjct: 59 DGVTVARRLRDLGVALPILMLTARGDVRDRVSGLDAGADDYLPKPFDLDELLARLRALYR 118 Query: 117 QHHALN-STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 + + + +++ L +D V+ V+R + I L+ +EF +L LL S AG ++ R +I E Sbjct: 119 RGSLVGEAPVQLGDLVVDPVARRVTRGGVEIVLSAREFDILHLLVSHAGRVVSRLMILDE 178 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +W D +N +DV + +RAK+D PF + I T+RG+GY Sbjct: 179 VWDGETDLRSNVIDVHLAAIRAKIDKPFGTETITTLRGVGY 219 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 80/218 (36%), Positives = 131/218 (60%), Gaps = 3/218 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+I+D++ + +GL+ GY + + G++GL L L+D+ LIILDIM+P +DG + Sbjct: 4 KILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGLE 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR---QH 118 + + LR P++ +T DS+ DRV GL++GA+DYLVKPF+F EL+ARV+A LR Sbjct: 64 VCKRLRKDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDHK 123 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + L S L +D + R + +I + EF LL +++ R ++ +WG Sbjct: 124 KKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMDRVWG 183 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +F ++N ++V + LR+K++ +LI T+RG GY Sbjct: 184 FDFRGESNVLEVYVGYLRSKLEAQNEPRLIHTVRGAGY 221 >UniRef50_B4WSE4 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WSE4_9SYNE Length = 243 Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 95/231 (41%), Positives = 134/231 (58%), Gaps = 14/231 (6%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGL--YLALKDDYALIILDIMLPGMDGW 60 IL+ ED++RT+ + + L A Y++ A +DG+ L + D L++LD+M+P +DG+ Sbjct: 10 ILIAEDDERTRTALVKSLEAADYIVIAAADGQAALQCFQTASDIIDLVVLDVMMPKLDGF 69 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQL----- 115 Q+ Q LR P+I T S DRV GL+ GANDY+VKPFS EL+AR+R+ L Sbjct: 70 QVCQRLRATSNVPIIMATVLGSSSDRVTGLEIGANDYIVKPFSTKELIARIRSILRRAAR 129 Query: 116 RQHH----ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTV 171 RQ H S +EI +DS + + ++ LT EF+L+ LLASR G I R Sbjct: 130 RQEHVSGVVHRSAIEIGQFVIDSSTRRAYIEGHNLRLTEIEFRLIELLASRPGHIFSRGD 189 Query: 172 IASEIWGINFDS--DTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFV 219 I +WG + +S DT TVDV I RLR K+++ K I TIRG GY F+ Sbjct: 190 ILEALWGYDANSAADTKTVDVHISRLRIKLNETTHNPKYIVTIRGRGYMFL 240 >UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=Bacteria RepID=A7ZEI3_CAMC1 Length = 219 Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 90/219 (41%), Positives = 128/219 (58%), Gaps = 7/219 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL++ED +T+ L + GY +D+ +G + + Y LI+LD+M+P MDG Sbjct: 1 MKILVVEDEIDLNSVITRHLKKNGYSVDSACNGEEAMDFTAVAHYDLIVLDLMMPVMDGL 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 LQ R AK TPV+ LTA+D VDD V+GLD+GA+DYLVKPF F ELLARVR +R++ Sbjct: 61 TFLQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRRNS 120 Query: 120 ALNSTLEISG--LRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 N EI L++D SV I LT KE+++L L G I+ R I +W Sbjct: 121 G-NVASEICAGELKIDLSKKSVEFSGEQIELTGKEYEILEFLMLNKGRILTRDQIKEHVW 179 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 ++ +N +DV I+ +R K+ + + I T RG+GY Sbjct: 180 DFDYTGGSNVIDVLIKNIRKKLGEC---EAIQTKRGLGY 215 >UniRef50_C0Z6C7 Two-component response regulator n=3 Tax=Bacillales RepID=C0Z6C7_BREBN Length = 230 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 77/217 (35%), Positives = 132/217 (60%), Gaps = 2/217 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 +KILL++D +++ GL G+ + DG + + + + ++ILD+M+PGMDG+ Sbjct: 10 IKILLVDDEPTILQFLEMGLENEGFQVLTAQDGMNAVTMVKEHQPHVVILDVMMPGMDGF 69 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 ++ + L+ + I LTAR+ V+DRV+GL GA+DY++KPFSF ELLAR+ A++R H+ Sbjct: 70 EVCRMLKKIQNVATIMLTAREDVEDRVKGLTLGADDYMIKPFSFEELLARIHARIRNHYP 129 Query: 121 -LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 L S + + ++D ++ D + L+ E+ LL L + G ++ + +I +WG Sbjct: 130 HLLSKVHLGPFQIDDRRKEITYDGTLLELSPTEYSLLKYLVTNHGLVLSKPMILDNVWGY 189 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +F + N V+V IR LR K++D ++I T+RG GY Sbjct: 190 DFGGEENIVEVYIRSLRDKLNDR-QHRIIRTLRGAGY 225 >UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID=MPRA_MYCUA Length = 232 Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 136/223 (60%), Gaps = 7/223 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 ++IL+++D++ +E + + LS GY ++ DG + L + D ++LD+M+P +DG Sbjct: 3 VRILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLDGL 62 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-- 117 ++ + LR T P++ LTARDSV +RV GLD+GA+DYL KPF+ ELLAR+RA LR+ Sbjct: 63 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122 Query: 118 ----HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 A + + S L +D V+ V+R I+LTR EF LL +L + ++ R+ I Sbjct: 123 LEDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRIL 182 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 E+WG +F + N ++V + LR K + +LI T+RG+GY Sbjct: 183 EEVWGFDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGY 225 >UniRef50_C8WKQ8 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C8WKQ8_EGGLE Length = 237 Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 135/222 (60%), Gaps = 2/222 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED+ R + + L+E GY D V DG GL A DY +IILD+MLP MDG+ Sbjct: 1 MQVLIVEDDVRLAQALAHILAENGYQTDVVHDGASGLAYAECGDYDVIILDVMLPKMDGF 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRA-QLRQH 118 ++ LR + PV+ LTARD+V D++ GLDSGA+DY+ KPF+ +ELLA +RA RQ Sbjct: 61 AVVAQLRRKSISVPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQG 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L L L ++ S+ ++ + SI L+ KEF L +L + AG+++ + ++ +++WG Sbjct: 121 EVLFEKLAAGDLVLNLESYDLACGSKSIHLSYKEFSLAKVLMANAGQVVSKDMLIAKVWG 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 + ++ N V+ + LR K+ I T+R GY FVA Sbjct: 181 VESSAEDNNVEAYVSFLRKKMKFLGSTARIETLRRAGYRFVA 222 >UniRef50_Q1IVX4 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IVX4_DEIGD Length = 225 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 85/215 (39%), Positives = 130/215 (60%), Gaps = 2/215 (0%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L+IED + ++ L+ GY + DG GL + + L+ILD+MLP +DG ++ Sbjct: 7 VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDGLEV 66 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-HHAL 121 + +R TP+I LTA+D + D+V GLDSGA+DYL+KPFS ELLARVRA LR+ + A+ Sbjct: 67 ARRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPAV 126 Query: 122 NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINF 181 + ++ L M+ + R + L+ KEF+LL LLA G++ R I ++W + Sbjct: 127 TGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVWP-EY 185 Query: 182 DSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +N VDV I LR K+++ +LI T+RG+GY Sbjct: 186 TGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGY 220 >UniRef50_Q01RB2 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01RB2_SOLUE Length = 242 Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 90/220 (40%), Positives = 141/220 (64%), Gaps = 2/220 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL++ED+++ + +G+ E+G+ DGR+GL A +++ +I+LD+MLP +DG Sbjct: 17 MRILIVEDDRKLARQLKKGVDESGHASILAFDGREGLEAAQGNEFDVIVLDVMLPKLDGI 76 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +L+ LR + TP++ LTA D+ DD GLD+GA+DYL KPFSF LLAR+RA R+ Sbjct: 77 SVLRQLRQTRIGTPILLLTALDTPDDISTGLDAGADDYLTKPFSFKVLLARLRALSRRRQ 136 Query: 120 ALNSTL-EISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 A TL I+ L +D +H V R ++L++ EF +L +L +G +I RT + +WG Sbjct: 137 ADRQTLLRIADLALDPATHDVKRAGAMVSLSKTEFVILEILMRSSGRVITRTRLIDAVWG 196 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 D +NT+DV IR+LR K++ KL+ T+RG+GY+ Sbjct: 197 HERDVQSNTLDVFIRQLRTKIEPAGTTKLLHTVRGIGYTL 236 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 82/224 (36%), Positives = 125/224 (55%), Gaps = 7/224 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+L+IED++ +E L + Y + DG +G+ + ++ L++LDI+LPGM G++ Sbjct: 4 KVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMKGYE 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ---- 117 I Q +R + P+I L+ + + D+V+GLD+GA+DYL KPF F+EL AR++A LR+ Sbjct: 64 ICQKIRMLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRSKMN 123 Query: 118 --HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 + L +D S+ V ++L KE QLL LL + I + Sbjct: 124 ANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSAEKIYDQ 183 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSF 218 IWGI+ D TV V I LR K+++ P KLI T+RG GY F Sbjct: 184 IWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKF 227 >UniRef50_C1ZD82 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZD82_PLALI Length = 235 Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 134/218 (61%), Gaps = 6/218 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ L++ED + L + GY +D +DG GL+ AL +Y +I+LD MLP + G+ Sbjct: 1 MRALIVEDQPDLLFALRGMLEDEGYAVDTAADGESGLHRALVWEYDVIVLDWMLPRLSGF 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 +L+ LRT K TPV+ LTARD V DRV+GLD GA+DYLVKPF ELLAR+RA +R+ Sbjct: 61 DLLKQLRTKKSTPVLMLTARDGVADRVQGLDQGADDYLVKPFDRGELLARLRALIRRAAG 120 Query: 121 LN-STLEIS-GLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + S LE+ G+ ++ + V RD++ I LT +E+ + LA G ++PRT + I+ Sbjct: 121 ESESLLELGQGVTINLIHRKVFRDDVEIVLTAREYSIFEYLALHRGRVVPRTDLYDHIFD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 N +S +N +DV I LR K+ +I T RG+GY Sbjct: 181 ENDESLSNLLDVHISNLRRKL----GRDVIETRRGLGY 214 >UniRef50_B3EBC9 Two component transcriptional regulator, winged helix family n=2 Tax=Geobacter RepID=B3EBC9_GEOLS Length = 232 Score = 156 bits (395), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 93/224 (41%), Positives = 135/224 (60%), Gaps = 4/224 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED ++ E + GL GY + + G +G + D + L++LD+MLPG DG Sbjct: 1 MRVLVVEDERKIAEALKLGLEAEGYQVVTAASGEEGFFCLNADYFDLMLLDLMLPGHDGL 60 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSE-LLARVRAQLRQH 118 ++LQTLR T PV+ LT RD+V+DRV GLDSGA+DYLVKPF+F E L R Sbjct: 61 EVLQTLRAKGFTLPVLILTGRDTVEDRVLGLDSGADDYLVKPFAFPELLARIRLLLRRGR 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 H + L ++ L ++ +H RD + LT +EF+LL L G ++ R ++A ++W Sbjct: 121 HETANVLTLADLELNLPTHQALRDGQLLDLTSREFELLEYLLRHQGHVVSREMLAHDVWK 180 Query: 179 INFDSDT--NTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 + S N +DV I RLR K+D PFP KLI TIRG+G+ A Sbjct: 181 VRERSTPLDNVIDVNIARLRRKLDGPFPLKLIRTIRGVGFMATA 224 >UniRef50_A5UWJ8 Two component transcriptional regulator, winged helix family n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UWJ8_ROSS1 Length = 231 Score = 156 bits (395), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 89/221 (40%), Positives = 129/221 (58%), Gaps = 3/221 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++LLIED + +GL + GY +D +DG G LA ++Y LIILD+ LP +DG Sbjct: 1 MRLLLIEDEDDLAHALVRGLRQQGYAVDWAADGEQGCELASINEYDLIILDLNLPALDGL 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 + + LR ++ LTARD ++RV GLD+GA+DYL+KPF F ELLAR+RA LR+ Sbjct: 61 DVCRYLRANYPHLLILILTARDQPEERVIGLDTGADDYLIKPFHFGELLARIRALLRRDL 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L+ L++D + +V +N + LTRKEF +L L GE+I + ++ +W Sbjct: 121 RVRQPLLQYRDLKLDPATQTVWLNNQRLNLTRKEFAILSYLMRHQGEVITQEMLLEHVWD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPF-PEKLIATIRGMGYSF 218 + TNTV V I LR K+ D P + I T+ G+GY Sbjct: 181 GTVNPFTNTVRVHINALRRKLRDTIAPYRYIETVVGVGYRL 221 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 156 bits (395), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 92/228 (40%), Positives = 131/228 (57%), Gaps = 11/228 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D + + L+ GY + S+G + L + K+ +L++LD+M+P +DG+ Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDGYG 66 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + Q LR P+I LTA V DR+ GL+ GA+DY+VKPFS EL AR+R+ LR+ + Sbjct: 67 VCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADKI 126 Query: 122 NSTL--------EISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 + L I L++D+ V ++N + LT EF LL LL S+AGE R I Sbjct: 127 TTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRASIL 186 Query: 174 SEIWGINFDS--DTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSF 218 E+WG + DT VDV I RLRAK+ DDP LI T RG GY F Sbjct: 187 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234 >UniRef50_Q6MHZ0 Two component response regulator n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MHZ0_BDEBA Length = 224 Score = 156 bits (395), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 128/219 (58%), Gaps = 3/219 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ L++ED+ V QGL E +D S+GR A + Y +I+LD+MLP MDG+ Sbjct: 1 MRCLVVEDDNEIATIVKQGLGELEGDVDVESNGRRAFEKAQTNHYDIIVLDLMLPEMDGY 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++LR + TP++ L+A +DDR++GL G +DYL KPF+ +EL RV+ L++ Sbjct: 61 TFAKSLREKEINTPILILSALRELDDRLKGLSMGGDDYLTKPFAMAELQIRVKNLLKRSQ 120 Query: 120 ALN--STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + + L L+++ ++ V R + L +EF LL L S +II + I E+W Sbjct: 121 KASEVTQLVFQDLKLNRLNRDVVRAGRKLDLQEREFVLLDLFMSNPNKIIGKQTILKEVW 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +FD TN VDV + RLR K++ FP +LI T+RG+GY Sbjct: 181 NYDFDPQTNVVDVLVCRLRNKLEKDFPTRLIYTVRGVGY 219 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 156 bits (395), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 84/218 (38%), Positives = 127/218 (58%), Gaps = 5/218 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL+++D ++ + + L + GY + DG GL L + + L+ILD+MLP DGW Sbjct: 8 RILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGWS 67 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-HHA 120 IL+ ++ +TPVI LTARD +D V G + GA+DY+ KPF+ LLARV++ LR+ ++ Sbjct: 68 ILREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTNNM 127 Query: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 + S +EI L ++ SHSVS I L KE+ LL L + R + +E+WG + Sbjct: 128 VESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNEVWGYD 187 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 F D T+D I+ LR K+ + I TIRG+GY Sbjct: 188 FLGDDRTIDTHIKNLRKKI----GKNAIKTIRGIGYKL 221 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 156 bits (394), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 135/224 (60%), Gaps = 9/224 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+++++D + + + L + GY + DG D + L +++ +++LDIMLPG DG + Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA- 120 + + +R + P+I LTA+DS D+V GL+ GA+DY+ KPFS EL+ARV+A LR+H++ Sbjct: 64 VCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQ 123 Query: 121 -------LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 + + + I + + ++S+ + I LT +EF+L L+ G+++ R + Sbjct: 124 PAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLL 183 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGY 216 +WG ++ D TVDV IRRLR K+ DDP + I T RG+GY Sbjct: 184 QTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >UniRef50_Q3Z753 DNA-binding response regulator n=2 Tax=Dehalococcoides RepID=Q3Z753_DEHE1 Length = 222 Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 85/218 (38%), Positives = 131/218 (60%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL++D++ + + + L EAG+V++ DG G Y A ++ L+ILDI LP +G Sbjct: 1 MRILLLDDDKCLCQTLERALGEAGHVVEYACDGASGEYFAANSEFDLLILDIGLPDKNGI 60 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRA-QLRQH 118 ++ + LR T V+ LTARDS+D +V+GLD+GA+DYL KPF+ EL AR+RA Q R Sbjct: 61 EVCRKLRADGIVTSVLMLTARDSLDSKVKGLDAGADDYLCKPFACDELFARIRALQRRPP 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + +E +G+ D+VSH V I LT E+++L + G +I R+++ +WG Sbjct: 121 LRVLPVVETAGISFDNVSHRVCGGKTEIKLTAAEYKILEYFITNPGVLITRSMLEEHLWG 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 S +NT+D I++LR K+ I T+RG GY Sbjct: 181 AESTSVSNTIDSLIKKLRQKLGWDAKSGPIKTLRGAGY 218 >UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaproteobacteria RepID=Q88JD6_PSEPK Length = 220 Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 89/224 (39%), Positives = 140/224 (62%), Gaps = 7/224 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++LL+ED+ E + GL + GY +D + DG GL+ + + L+ILD+ LP MDG Sbjct: 1 MRLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPRMDGL 60 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++L+ LR + PV+ LTARD++DDR+ GLD+GA+DYLVKPF +EL AR+RA LR+ Sbjct: 61 ELLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRRSV 120 Query: 120 ALNSTL-EISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L E +G+ +D + V + + + LT KE+ LL L ++ G++ R + ++G Sbjct: 121 GRAKVLIEHAGVSLDPTTQQVQYNGVEVVLTPKEYVLLHELLAQPGKVFTRERLTQLLYG 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 + + ++NT++V I LR K+ + LI T+RG+GY V VK Sbjct: 181 WDEEPESNTLEVNIYHLRKKLFN----GLIRTVRGIGY-LVEVK 219 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 131/228 (57%), Gaps = 11/228 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D R + + L Y ID +G + + L+ +Y LI+LD+M+PG DG + Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR---QH 118 + + +R K TP+I LTA+ +RV+G ++G +DY+VKPFS E++ RV+A LR Q Sbjct: 68 VCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQT 127 Query: 119 HALNST------LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 N+ L S L +D +H V+ D ++LT KE++LL+ LA ++ R + Sbjct: 128 SYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREKL 187 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPE--KLIATIRGMGYSF 218 E+W F D TVD ++RLR K++ PE K I T+ G+GY F Sbjct: 188 LKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKF 235 >UniRef50_D2PLZ1 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=D2PLZ1_9ACTO Length = 236 Score = 155 bits (393), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 85/218 (38%), Positives = 124/218 (56%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL++ED +R + GL + G+ ++ DG GL+ + DY I+LD+MLPG+ G Sbjct: 1 MRILVVEDERRLARAIGHGLEDHGFTVELAHDGETGLWKGREQDYDAIVLDLMLPGLSGD 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-H 118 ++ + LR A TP++ LTAR + GL+ GA+DYL KPFS+ L+AR+ A LR+ Sbjct: 61 EVCRQLRAAGCWTPILILTARVGAEAEAGGLNLGADDYLRKPFSYQVLIARLNALLRRTA 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 A L + L +D +V R I LTR+EF +L L AG + I +WG Sbjct: 121 PARPVNLVVGDLVLDPARRTVRRGTTPIELTRREFSVLEYLMRNAGSTRSKAEILDHVWG 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +FD + N V+V + LR K+D PF I T+RG GY Sbjct: 181 ADFDREPNVVEVYVGYLRRKIDQPFGTGSIRTVRGHGY 218 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 133/228 (58%), Gaps = 11/228 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D+ E V+ L+ GY + D + L + + + I+DIMLPGMDG++ Sbjct: 29 KILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGFE 88 Query: 62 ILQTLRTAKQ---TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR-- 116 +++ LR+ ++ TPV+ L+A+ D+V GL+ GA+DY+ KPFS E++AR++A R Sbjct: 89 LVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRRI 148 Query: 117 -----QHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTV 171 + + GL +D + V + ++LT EF+LL LA G++ R V Sbjct: 149 QLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRDV 208 Query: 172 IASEIWGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSF 218 + ++WG ++ DT TVDV IRRLR K+ +DP K I T+RG GY F Sbjct: 209 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 256 >UniRef50_A9AVR8 Two component transcriptional regulator, winged helix family n=6 Tax=Chloroflexi (class) RepID=A9AVR8_HERA2 Length = 248 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 127/223 (56%), Gaps = 6/223 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+ +D+ V LS Y + VS+G + L + +Y L+++D+M+P +DG+ Sbjct: 20 KILVADDDPAILRLVEVALSGQRYQLVTVSNGLEALKMYRDGEYQLLLIDVMMPYIDGFT 79 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR----- 116 + + +R P+I +TARD DD V G + GA+DY+ KPF +EL ARV A +R Sbjct: 80 VTERIRARSDVPIIIITARDGTDDVVHGFELGADDYITKPFRTAELQARVEAIIRRVEGY 139 Query: 117 QHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 QH + + I L +D H V + LT EF+LL+ LA+ +G++ R V+ E+ Sbjct: 140 QHRKASPIVRIGDLEIDEPRHKVLLAGEDVNLTPMEFELLYFLAANSGQVFDREVLFREV 199 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSF 218 WG + TN VDV +RRLR K+++ P + I T+RG+GY Sbjct: 200 WGYEYVGQTNLVDVCVRRLREKIEEQPSKPRRILTVRGVGYKL 242 >UniRef50_C5CE19 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE19_KOSOT Length = 228 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 89/220 (40%), Positives = 132/220 (60%), Gaps = 5/220 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL++EDN++ E + + L G+++D DG +GL LAL +Y IILDI+LPGM G Sbjct: 1 MKILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGI 60 Query: 61 QILQTLRTAK--QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 +I + LR + Q P++ LTA SV++RV GL+ GA+DY+ KPF EL+ARVRA +R++ Sbjct: 61 EICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRN 120 Query: 119 HAL-NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + TL+ L M+ + VS + L+ KEF LL L G + R I ++W Sbjct: 121 QVVRQETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKLW 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFP-EKLIATIRGMGY 216 F+ +N VDV + LR K+ PF ++ I T+ +GY Sbjct: 181 ESGFEPRSNIVDVYVLYLRKKL-KPFGYDEKIETVHNIGY 219 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 128/222 (57%), Gaps = 5/222 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL ++D+ + + + L + G+ + S G + L A + L+ILD+M+PGMDG++ Sbjct: 4 RILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFE 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ---- 117 Q L+ ++ P+I L+AR DRV G G +DY KPFS +EL RV+A LR+ Sbjct: 64 TYQKLKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLGEP 123 Query: 118 HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 L + L+ L +D +V+ +N + LT K+F+LLWL+AS + + + +IW Sbjct: 124 KVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDKIW 183 Query: 178 GINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 +F D NTV V IRRLR KV+ DP + I T+ GMGY F Sbjct: 184 DSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKF 225 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 88/230 (38%), Positives = 132/230 (57%), Gaps = 18/230 (7%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL++ED+ + E L G+ ++ +DGR GL +A +D Y LI+LDIMLPG+DG+ Sbjct: 3 KILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDGFA 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQL------ 115 + + LR K+ PV+ +TAR D +RGL GA+DY++KPF+ +EL+ARVR+ + Sbjct: 63 VCRELRRYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYERI 122 Query: 116 ------RQHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPR 169 QH + LEI ++D ++ V D + TR+EF+LL LA + R Sbjct: 123 LASVKPEQHVVKSGALEI---QLD--AYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSR 177 Query: 170 TVIASEIWGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSF 218 + +WG D+ TV V I R+R K+ +DP + + TIRG GY F Sbjct: 178 EALFERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRF 227 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 84/226 (37%), Positives = 130/226 (57%), Gaps = 11/226 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRD--GLYLALKDDYALIILDIMLPGMDG 59 KIL++ED+ +E + L++ GY ++ DG G Y K +L+ILD+MLPG+DG Sbjct: 31 KILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKP--SLVILDVMLPGIDG 88 Query: 60 WQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +++ + +RT P++ LTAR S D+V GL++GA+DYL KPF ELLAR++A LR+ Sbjct: 89 FELCRLIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQ 148 Query: 120 ALNSTLEISG------LRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 NS E +G L + H V R+ +++ + KEF L + + R + Sbjct: 149 TQNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQLL 208 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 ++WG ++ T TVDV I LR K++ DP + + T+RG GY F Sbjct: 209 EKVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKF 254 >UniRef50_Q2IUG0 Two component transcriptional regulator, winged helix family n=207 Tax=Bacteria RepID=Q2IUG0_RHOP2 Length = 257 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 134/219 (61%), Gaps = 8/219 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 +++L++ED+ +T L++AGYV+D DG +G +L + Y ++LDI LP MDG Sbjct: 29 VRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGI 88 Query: 61 QILQT-LRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 +L+ R A+ PV+ LTARD D+V+G D+GA+DY+ KPF E+LAR+RA LR+ Sbjct: 89 SVLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSA 148 Query: 119 -HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 HA S L + +D+ + VS + LT E++LL L +G ++ RT + ++ Sbjct: 149 GHA-QSELTCGPVVLDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLY 207 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +FD D+NT++V + R+R K+D +I T+RG+GY Sbjct: 208 DQDFDRDSNTIEVFVGRIRKKLD----VDIIQTVRGLGY 242 >UniRef50_Q48H36 DNA-binding response regulator n=6 Tax=Gammaproteobacteria RepID=Q48H36_PSE14 Length = 222 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 129/221 (58%), Gaps = 7/221 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++LL+ED+ + + L GY +D ++DGRD +Y + Y LI+LD+ LPGM G Sbjct: 1 MRLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGATEPYDLIVLDLGLPGMPGL 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++LQ R TPV+ LTAR S +R+ GL +GA+DYL KPF EL R++A LR+ H Sbjct: 61 EVLQQWRGKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120 Query: 120 AL--NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 L TLE +GL +D SVSRD + I LT EF+LL G+I+ ++ ++ ++ Sbjct: 121 GLANQPTLESAGLNLDEGRQSVSRDGVDIQLTSAEFRLLRYFMLHPGQILSKSHLSEHLY 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 + D+N ++V + LR K+ ++ T RG GY + Sbjct: 181 DGENERDSNVIEVHVNHLRRKLG----RAVVETRRGQGYLY 217 >UniRef50_A6TPN8 Two component transcriptional regulator, winged helix family n=7 Tax=Bacteria RepID=A6TPN8_ALKMQ Length = 225 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 92/219 (42%), Positives = 132/219 (60%), Gaps = 3/219 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL+IED E ++Q L + Y +D + DG GL AL D Y LI+LDIMLP MDG Sbjct: 1 MRILIIEDEIPLAEALSQMLKKNNYTVDLLHDGESGLDYALSDIYDLILLDIMLPKMDGL 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 IL+ +R TPVI LTA+ + D+V GLDSGA+DYL KPF+ ELLAR+RA R+ Sbjct: 61 SILKEIRQEGIATPVILLTAKGEITDKVMGLDSGADDYLAKPFATEELLARIRAISRRKG 120 Query: 120 A--LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 L+ TL+ ++++ + +S+++ + LT KE LL L R + +I +IW Sbjct: 121 EVILDGTLKYGDVQLNPSTLKLSKESKEVKLTLKESDLLAFLILRNNLASSKELIIEKIW 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 G + D + N V+V I LR K+ + +I T+RG+GY Sbjct: 181 GFDSDVEHNHVEVYISFLRKKLLFLTSKVVINTLRGVGY 219 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 93/228 (40%), Positives = 126/228 (55%), Gaps = 12/228 (5%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +ILLIED+Q + L Y + SDG +GL+L + LIILDIMLP MDG Q Sbjct: 4 RILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGLQ 63 Query: 62 ILQTLRTAKQ--TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + Q LR AK TP++ LTA+ S DRV GL++GA+DYL KPFS EL ARV+A LR+ Sbjct: 64 VCQHLR-AKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTD 122 Query: 120 --------ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTV 171 + L L +D ++ + ITLT KEF LL +AS G++ R Sbjct: 123 MSQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREK 182 Query: 172 IASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 + +WG +TV+ I RLR K++ D K + T+ G+GY F Sbjct: 183 LLDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_A5N8U3 Transcriptional regulator n=3 Tax=Clostridium RepID=A5N8U3_CLOK5 Length = 229 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 77/210 (36%), Positives = 122/210 (58%), Gaps = 5/210 (2%) Query: 13 QEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTAKQT 72 +E + ++ GYV+ A +G DGL + +LI+LD+M+P MDG+ +L LR Sbjct: 15 REMLVNYFTKEGYVVQAACNGEDGLQIVKSKSVSLILLDVMMPKMDGYTMLIKLRKFSNI 74 Query: 73 PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH----ALNSTLEIS 128 PVI LTA+ D+++G G +DY+VKPF F+EL RV A LR+ N L++ Sbjct: 75 PVILLTAKGQQVDKIKGFIDGCDDYMVKPFDFTELSLRVMAILRRTKISSAVQNHILKVK 134 Query: 129 GLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFDSDTNTV 188 + ++++ H+V +DN+ I LT KE+++L+ LA G + ++ +W NF + NTV Sbjct: 135 NIEINTLEHTVKKDNVEIVLTPKEYEILYTLAYNRGRVYSTKILYEMLWKDNFMQNDNTV 194 Query: 189 DVAIRRLRAKVDDPFPE-KLIATIRGMGYS 217 + I+ LR K+ D + K I TI G+GY Sbjct: 195 TMHIKNLREKLGDSVKQGKYIKTIWGVGYK 224 >UniRef50_A9HHL1 Probable two-component response regulator transcription regulator protein n=1 Tax=Roseobacter litoralis Och 149 RepID=A9HHL1_9RHOB Length = 223 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 90/224 (40%), Positives = 135/224 (60%), Gaps = 12/224 (5%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M ILLIED R ++V +GL+ G+ +D ++G DGL LA +++Y +++LD+MLPG+ G Sbjct: 1 MNILLIEDEARVADFVRRGLAAEGWSVDHAANGEDGLELAAQNNYDVVLLDLMLPGIQGQ 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + + LR K +TP++ LTA D +++V GL GA+DYL KPF F EL+AR+ A R+ Sbjct: 61 GVCRKLRARKSKTPIMMLTALDGSEEKVEGLKIGADDYLPKPFDFDELVARIEALHRR-- 118 Query: 120 ALNSTLEIS-------GLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 A T ++S + D S V+ + I LT+KE LL LL + G ++ R I Sbjct: 119 ATGYTADVSDTIITNGAITFDRASLEVNVEKKPIELTKKERDLLQLLLTSNGRVLSRERI 178 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 + +WG+N D TN VDV + RLR K+ + I T+R +GY Sbjct: 179 LNTVWGLNADPLTNVVDVYVGRLRRKLGQEG--QRIVTLRNVGY 220 >UniRef50_Q1LCD6 Two component transcriptional regulator, winged helix family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LCD6_RALME Length = 225 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 89/220 (40%), Positives = 133/220 (60%), Gaps = 7/220 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYA--LIILDIMLPGMD 58 M+ILL++D+Q+ + +GL E GY ++ A + YA L+ILD MLPG Sbjct: 1 MRILLVDDDQKAARLLARGLQEEGYDVETAHSVD---VAAAHNCYAFSLLILDWMLPGKS 57 Query: 59 GWQILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 G + + LR +TP++ LTARD+++DR+ GLD+GA+DYL KPF F ELLA VRA LR+ Sbjct: 58 GVEFCRELREQGVRTPILMLTARDAINDRITGLDTGADDYLTKPFVFEELLAHVRALLRR 117 Query: 118 -HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 A + + ++ L +D + V+R + LT KE+ +L LL + AGEI+ R +A I Sbjct: 118 VELAQPAPITLNDLVIDPQTRGVTRAGARLDLTPKEYAILILLVTHAGEIVSRAQLAEHI 177 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 W + + N +DV ++ LR K+D P LI T+RG G+ Sbjct: 178 WHADLIAIDNLIDVHMKNLRRKLDPPGMAALIQTVRGQGF 217 >UniRef50_B1ZUL4 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B1ZUL4_OPITP Length = 226 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 127/221 (57%), Gaps = 3/221 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL+IED + + + L+ G+V A DG GL L+D L++LD+ LPG+DG Sbjct: 1 MRILVIEDEAQLARHIVRALTRHGHVASAELDGEKGLQSVLRDPPDLVVLDLNLPGVDGL 60 Query: 61 QILQTLRTAKQTP-VICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +L LR A V+ LTAR V+ RV+GL +GA+DYL KPFS EL+AR+ A R+ Sbjct: 61 AVLARLREANSPARVLILTARSEVEHRVKGLKAGADDYLPKPFSLDELVARIEALGRRGA 120 Query: 120 ALNST--LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + L+++ L+MD VSR + L+ +EF +L +L G + RT + +W Sbjct: 121 TPTAADFLKVADLQMDVQHRRVSRAARPVALSPREFDVLQVLMQEPGRVFSRTELCERVW 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 + DT TV++ I RLR KVD F LI T+R +GY+ Sbjct: 181 QRDHQYDTRTVEIFIARLRKKVDSGFNAPLIHTLRSIGYTI 221 >UniRef50_B7JEB2 Alkaline phosphatase synthesis transcriptional regulatory proteinphoP n=9 Tax=Bacillus cereus group RepID=B7JEB2_BACC0 Length = 220 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 83/216 (38%), Positives = 124/216 (57%), Gaps = 4/216 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 ++ILL+ED++ V LS AGY +DA +G + + Y L+ILDI+LPGM+G Sbjct: 3 IRILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILLPGMNGH 62 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 ++L+ R TPV+ +TA ++++R D+ A+DY+ KPF LL RV A LR+ A Sbjct: 63 ELLREFRKLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 122 Query: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 + L L + V D+ + LT KEF++L LL G + VI S +WG + Sbjct: 123 VAKELHYGKLTILPEDFKVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWGYD 182 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 FD D +TV I+ LRAK+ P+ +I T+RG+GY Sbjct: 183 FDGDGSTVHTHIKNLRAKL----PDNIIKTVRGVGY 214 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 96/228 (42%), Positives = 132/228 (57%), Gaps = 11/228 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+L+++D ++ + LS GY + SDG + L L ++ ++ILDIM+P +DG+ Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH-- 119 + Q +R P+I LTA V DR+ GL+ GA+DY+VKPFS EL AR+RA LR+ + Sbjct: 76 VCQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTNKA 135 Query: 120 ALNSTLEISG------LRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 A +S L SG L +D + +DN I LT EF LL LL SR+G+ R I Sbjct: 136 AFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRADIL 195 Query: 174 SEIWGINFDS--DTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 E+WG + DT VDV I RLRAK++ DP LI T RG GY F Sbjct: 196 QEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLF 243 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 81/223 (36%), Positives = 129/223 (57%), Gaps = 4/223 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 + +L+IED+ E + + + GY+ DG GL + I LDIMLP +DGW Sbjct: 6 LSVLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLPKIDGW 65 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++ Q +R K+ P+I LT + D+++GLD GA+DY+VKPF +EL+AR++A +R+ Sbjct: 66 ELCQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAVMRRAD 125 Query: 120 ALN---STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 LN + + GL +D + + + IT+ KE LL+ LAS ++ R + +I Sbjct: 126 LLNDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVFTRQQLLDQI 185 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 WG F+ D T+DV I+R+R K+ + + I TIRG+GY F+ Sbjct: 186 WGYAFEGDPRTIDVHIKRIREKLTEADAKWTIKTIRGVGYKFL 228 >UniRef50_UPI0001C318D2 two component transcriptional regulator, winged helix family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C318D2 Length = 224 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 94/218 (43%), Positives = 134/218 (61%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL+IED ++V +GL GY + DG +G AL DD L++LD+MLPG DG Sbjct: 1 MRILVIEDETAIADFVQRGLQAEGYAVSIAGDGIEGERRALHDDVDLVVLDVMLPGRDGL 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +L ++R K + PV+ L+AR +VDDRV GLD GA DY+ KPFSF EL ARVRA LR+ Sbjct: 61 AVLSSIRRVKPELPVVMLSARATVDDRVAGLDGGATDYVTKPFSFDELAARVRAHLRRPR 120 Query: 120 ALN-STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + +TL +G+ +D + +V R+ + + L+ +EF LL + + R I S +WG Sbjct: 121 QRDATTLSAAGIELDLLGRNVRREGVELRLSAREFDLLAYFLRHPDQALSRQQILSAVWG 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +FD TN V+V IR LR K++ P I T+R +GY Sbjct: 181 YDFDPGTNVVEVYIRYLRRKLELPGRPTPIDTLRSVGY 218 >UniRef50_Q21HX3 Response regulator receiver n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21HX3_SACD2 Length = 224 Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 81/219 (36%), Positives = 133/219 (60%), Gaps = 4/219 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL++EDN+ E V + G+ ID DG ++LA+ ++Y + + DI +PG DG Sbjct: 1 MRILILEDNRDIAESVGEFFELNGHHIDYAMDGLTAMHLAVTNEYDIYLFDIGVPGTDGI 60 Query: 61 QILQTLRT--AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRA-QLRQ 117 + + LR QTP+I LTAR++++D+++G +SG +DY+VKPF ELL RV A R Sbjct: 61 SLTKRLRIDGNDQTPIIFLTARETLEDKIKGFESGCDDYVVKPFQLKELLVRVNAIYKRS 120 Query: 118 HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 +++ ++I+GLR+D H V+RDN++IT+T +++L LA + ++ R I S IW Sbjct: 121 QPQISNVIDIAGLRIDKNKHEVTRDNVNITITPVCYKILLTLAESSPNVVSREKIESIIW 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 + ++++ + LR KVD PF LI T+ G+ Sbjct: 181 K-DIAPSSDSLKSHLYSLRQKVDKPFDFPLIHTVSKQGF 218 >UniRef50_C4F9Y6 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4F9Y6_9ACTN Length = 245 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 92/224 (41%), Positives = 129/224 (57%), Gaps = 5/224 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++LLIED R E V + L ++GY D G DGL +AL Y +++LDIMLP M G Sbjct: 16 MRVLLIEDTPRLAEAVAEILRKSGYGADVAHIGADGLAMALTGAYDVLLLDIMLPDMSGM 75 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 +L+ LR A PVI LTAR V DRV GLD+GA+DYL KPF SELLAR+RA R+ Sbjct: 76 DVLRKLREAGSVVPVILLTARQGVGDRVAGLDAGADDYLPKPFHASELLARIRAVTRRPA 135 Query: 119 -HALNSTLEISGLRMDSVSHSVSRDN--ISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 + N+ +E GL +D SV +++ LT KE LL R+G + ++ +A Sbjct: 136 TYRPNNAIEACGLVLDVEKLSVQARGGAVAVELTPKEALLLEAFMGRSGSPVSKSDLAVR 195 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 +WG + N ++V + LR K++ I T+RG+GY + Sbjct: 196 LWGPHVSLVDNRIEVLVHALRGKLEKLESPARIETVRGVGYRLM 239 >UniRef50_C6VX71 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteroidetes RepID=C6VX71_DYAFD Length = 232 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 127/222 (57%), Gaps = 6/222 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+LLIED + + L+ G+ I DG+ GL + L+ + +IILD+M+P ++G Sbjct: 1 MKLLLIEDEPNVISLIQRSLTANGHEITIAMDGQSGLQMVLQHQFDVIILDLMIPIINGM 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR--- 116 ++ + R A+ TP++ LTA + ++ V GLDSGA+DY+ KPF +EL AR+R +R Sbjct: 61 EVCRRARNAQVTTPILMLTALGTTENIVSGLDSGADDYMTKPFKLAELEARLRTLIRRGK 120 Query: 117 --QHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 + + L + L +D V+ +V R I LT EF+LL L S ++ R I Sbjct: 121 EPEKEKNDKVLTLGDLVLDKVTKTVKRGGQPIELTATEFRLLEYLLSNTNRVLNRMEILE 180 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +W INF+ TN VDV I LR K+D KLI T+ GMGY Sbjct: 181 NVWDINFNLGTNVVDVYINYLRKKIDKNHDIKLIHTVFGMGY 222 >UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax=Bacteria RepID=B7IIP6_BACC2 Length = 221 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 76/217 (35%), Positives = 131/217 (60%), Gaps = 6/217 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL++ED+Q QE + Q L Y + SDG +G+ K + LI+LD+M+P ++G+++ Sbjct: 6 ILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFEV 65 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH--A 120 + +R+ P+I LTA + +D+++G D G +DY+ KPFSF L+ RV A LR+ + Sbjct: 66 SKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKN 125 Query: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 +N+ L +R+D ++ V +++ I LT KEF++L LL +++ R I ++WG + Sbjct: 126 VNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWGYD 185 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 + +T +D I+ LR K+ P+ I TI+G+GY Sbjct: 186 YFGETRIIDTHIKNLRKKLAIPY----IKTIKGIGYK 218 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 82/218 (37%), Positives = 132/218 (60%), Gaps = 2/218 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+++D+ E + L GY VSDG + + +++LD+MLPG +G Q Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 I Q +RT P++ LTA+ D V+GL++GA+DY+ KPF EL+ARVRAQLR+ Sbjct: 77 ICQDIRTQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRRGETG 136 Query: 122 NS-TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 + L I +++D +H V+RD + I LT EF LL LA + ++ R ++ ++WG Sbjct: 137 QAENLSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLLEQVWGYR 196 Query: 181 FDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYS 217 +DT V+V ++RLRAK++ DP +++ T+RG+GY Sbjct: 197 HAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 90/224 (40%), Positives = 131/224 (58%), Gaps = 11/224 (4%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 +KILL+ED+ QE VT L GY + +G L L K+ L++LD+MLP +DG Sbjct: 2 VKILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGL 61 Query: 61 QILQTLRTAKQT---PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 + + +R ++T P+I L+ARD V DRV GL+ GA+DY+ KPFS ELLAR++A+LR+ Sbjct: 62 DVCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLRE 121 Query: 118 HHALNST-----LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 NST L L + S+ V+ +TLT KEF+LL + R ++ R + Sbjct: 122 ERR-NSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYL 180 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 ++WG DT TVDV I LR+K+ P +I ++RG+GY Sbjct: 181 LQKVWGYTVSGDTRTVDVHISNLRSKLKSVSP--IIESVRGVGY 222 >UniRef50_D1BPS5 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BPS5_VEIPT Length = 224 Score = 153 bits (386), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 127/219 (57%), Gaps = 4/219 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKILL+ED + + L +D +G+ + Y +I++DIM+P +DG Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 L +R TPV+ LTA+DS+ D+V L++GA+DYLVKPF EL AR+ A R++ Sbjct: 61 SALAQMRNDGNTTPVLLLTAKDSLQDKVTSLNTGADDYLVKPFDLEELTARIYALARRNA 120 Query: 119 -HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 HA N + + L ++ +V RD +ITLT KEF LL+ LAS ++ R I +W Sbjct: 121 RHAQND-IHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVW 179 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +++S +N +DV I+ LR K+D KLI T+RG+GY Sbjct: 180 EYDYESYSNLIDVYIKNLRKKIDTDENVKLIQTVRGVGY 218 >UniRef50_UPI00016B25CE two component transcriptional regulator, winged helix family protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25CE Length = 224 Score = 152 bits (385), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 129/222 (58%), Gaps = 8/222 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPG--MD 58 M+IL++ED ++ +++ L GY ID + +G +A Y +I+D M+PG D Sbjct: 1 MRILIVEDEKKLARAISRTLKNEGYAIDIEYNSSEGYAMASTQPYDALIIDRMMPGDFSD 60 Query: 59 GWQILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 G +L+ LR TP I LTA ++ GLD+GA+DYL KPF+ ELLAR+RA LR+ Sbjct: 61 GLDMLKKLRKDGISTPAIVLTALGETSQKITGLDAGADDYLAKPFAIDELLARLRAILRR 120 Query: 118 HHALNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 T L++ L +D+ + +V DN I LT KE+ LL L +G+ + + I + Sbjct: 121 PKKAQPTILKVGKLHIDTTNRTVEFDNKKIDLTAKEYALLQYLMKSSGQTLSKEQIMEHV 180 Query: 177 WGINFDSD--TNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 W NFD+D NTV+ I+ LR K+D+ + K I T+RG+GY Sbjct: 181 W--NFDADILPNTVEAYIKALRKKIDEKYKVKYIKTVRGIGY 220 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 152 bits (385), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 81/231 (35%), Positives = 132/231 (57%), Gaps = 9/231 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 +++L+ +D + ++ + + L Y +D DG + L L + Y L+ILD+M+P +DG Sbjct: 4 IRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGI 63 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 ++ + LR P++ LTA+D D++ GL GA+DY+ KPFS +E++AR++A +R+ Sbjct: 64 EVCRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFLV 123 Query: 121 LNST--------LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 L S L GL +D + V+ + I+LT KE +LL AS ++ +T + Sbjct: 124 LGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQL 183 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAVK 222 +W N+ D NTV V IR+LR K++ DP K I T+ G+GY FV K Sbjct: 184 FRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVGEK 234 >UniRef50_B5D1V8 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=B5D1V8_9BACE Length = 231 Score = 152 bits (385), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 126/221 (57%), Gaps = 7/221 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+IED++R + + GL E GY DG GL L + L+I DI+LP +DG+++ Sbjct: 4 ILIIEDDKRVADLLKTGLEENGYHTMVAYDGAMGLRLFQSHSFQLVISDIILPKLDGFEL 63 Query: 63 LQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQL-RQHHA 120 + +R A PV+ LTA S DD++ G D+GA+DY+VKPF F EL AR++ L R+ A Sbjct: 64 CKEIRKANPHIPVLMLTALGSTDDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRKAEA 123 Query: 121 LNST-----LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 S L L++D+ V R I L+ KE+ LL + A +I R IA + Sbjct: 124 TVSVVAPEKLTYKDLQIDTNRREVMRQGNLIRLSPKEYNLLTYMVQNAERVISRIEIAEK 183 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +W +FD+ TN +DV I LR K+D F KLI T G+G+ Sbjct: 184 VWNTHFDTGTNFIDVYINYLRKKIDKDFETKLIHTKPGIGF 224 >UniRef50_Q20YF2 Two component transcriptional regulator, winged helix family n=24 Tax=Proteobacteria RepID=Q20YF2_RHOPB Length = 221 Score = 152 bits (385), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 89/224 (39%), Positives = 129/224 (57%), Gaps = 8/224 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILLIED+ R + + L AGY +D +DG DG ++ Y ILD+ LPG+DG Sbjct: 1 MRILLIEDDTRLARQIAEALERAGYTVDRSADGEDGWFMGDSGVYDAAILDLGLPGLDGL 60 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +L+ R AK+ PV+ LTAR S ++V GL GA+DYL KPF ELLAR+ A +R+ Sbjct: 61 SVLRRWRDAKRAMPVLILTARASWREKVTGLREGADDYLTKPFEIEELLARIEALIRRAS 120 Query: 120 ALNSTLEIS--GLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 ++T EIS GLR+D + +SRD + LT E++ L L +++ +T + I+ Sbjct: 121 G-HATAEISVAGLRLDPSTQRISRDGAPLDLTALEYRALAYLMMHPAKVVSKTELTEHIY 179 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 G + D D+N ++V + RLR K+ I T RG GY V Sbjct: 180 GQDDDRDSNVIEVLVNRLRKKIG----ADAIRTRRGQGYQLADV 219 >UniRef50_Q030C5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=6 Tax=Lactococcus lactis RepID=Q030C5_LACLS Length = 234 Score = 152 bits (384), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 88/220 (40%), Positives = 133/220 (60%), Gaps = 12/220 (5%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYL-ALKDDYA-LIILDIMLPGMDG 59 +IL+IED + + LS GY + + +DG GL + K +Y +++LD M+P +DG Sbjct: 16 QILIIEDEESISNLLETELSFEGYNVFSAADGMSGLKIFEEKQEYLDVVLLDWMIPKLDG 75 Query: 60 WQILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 ++L+ ++ + PVI +TARD V D+V GLD+GA+DYL KPF+ EL+AR+R R++ Sbjct: 76 LEVLRRMKKMTNKVPVIFVTARDYVGDKVAGLDAGADDYLTKPFNIEELMARLRVIFRKN 135 Query: 119 H--ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 A+ S +S ++ H+V + +LT++EF LL L GEII R I E+ Sbjct: 136 TQPAIYSYGTVS---LNPGEHTVEYQEKATSLTQREFALLLFLFEHQGEIISRDDILEEV 192 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 WG+NF NTVD +R LR K+D + +I TIRG+GY Sbjct: 193 WGMNFGGQLNTVDTYVRYLRKKLD----KNMIETIRGLGY 228 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 152 bits (384), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 128/221 (57%), Gaps = 4/221 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KILL+ED++ ++ L++ GY ++ DG + L + L++LDIMLP DGW+ Sbjct: 3 KILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGWE 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA- 120 + + +R P+I LTA+D D+V GL GA+DY+ KPF ELLAR+ A LR++ + Sbjct: 63 VCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQSD 122 Query: 121 LNSTLEISG--LRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L+ + +I MD V +V + L+ +EF++L LL S G + R +I IWG Sbjct: 123 LSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHIWG 182 Query: 179 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSF 218 NF + VDV IR LR KV DDP K I T+R +GY F Sbjct: 183 ENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKF 223 >UniRef50_A4SHT1 Two-component system response regulator n=10 Tax=Proteobacteria RepID=A4SHT1_AERS4 Length = 218 Score = 152 bits (384), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 84/218 (38%), Positives = 131/218 (60%), Gaps = 6/218 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL++ED + + + L +G+V D DG + +L + Y IILD+ LPG DG Sbjct: 1 MRILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGLPGRDGL 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +L+ R+ TPV+ LTAR + +++ GL++GA+DYL KPF +EL+ARV+A +R+ Sbjct: 61 SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVQALVRRAA 120 Query: 120 A-LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 +S LEI G+R+D + V + I LT EF++L L G+++ R+ + I+ Sbjct: 121 GNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIYA 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +FD D+NTV+V I R+R K LI T+RG+GY Sbjct: 181 QDFDRDSNTVEVFIGRIRKKTH----ADLIETVRGLGY 214 >UniRef50_B0S0W9 Two-component response regulator n=9 Tax=Clostridiales RepID=B0S0W9_FINM2 Length = 238 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 92/224 (41%), Positives = 136/224 (60%), Gaps = 17/224 (7%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDG-----LYLALKDDYALIILDIMLPGM 57 I +ED++ +E + L+ GY DA+ G G LY + D LIILDIMLPG Sbjct: 18 ICCVEDDKSIRELIIYALNNEGY--DAMGFGDYGEFKSTLYSSSID---LIILDIMLPGK 72 Query: 58 DGWQILQTLRTAKQT---PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQ 114 G +IL+ +R ++T PV+ LTA+ + D++ GLDSGA+DY++KPFS ELLARVRA Sbjct: 73 SGLEILKEIRNNEKTKNIPVMMLTAKTTEYDKIVGLDSGADDYMIKPFSIMELLARVRAL 132 Query: 115 LRQHHALNSTLEI--SGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 LR+ + +I + +D +VS D ++ LT KEF+LL+ L S G+++ R I Sbjct: 133 LRRSSLSKTKSKIIYKNIELDYDKRTVSVDGENVELTYKEFELLYYLLSNVGKVLTRENI 192 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 ++IWG +F+ ++ TVDV I LR K+ + +I TIR +GY Sbjct: 193 MTKIWGFDFEGESRTVDVHIATLRQKLKN--ASSIIKTIRNLGY 234 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 86/229 (37%), Positives = 130/229 (56%), Gaps = 12/229 (5%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 +KIL++ED++ + L + GY + DG + D++ L+ILDIMLP + G+ Sbjct: 5 IKILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVGGY 64 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 ++LQ +R TPV+ L+A+ D++ GL GA+DYL KPF EL ARV+AQLR++ Sbjct: 65 EVLQKIREKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRY-- 122 Query: 121 LNSTLEIS---------GLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTV 171 LN + E + M+ ++ V + S+TLT KEF++L L ++ + Sbjct: 123 LNFSWETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFTKNQ 182 Query: 172 IASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFV 219 + IWG N+ +D NTV V IRRLR K++ DP I TI G+GY V Sbjct: 183 LFKSIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKLV 231 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 89/237 (37%), Positives = 134/237 (56%), Gaps = 21/237 (8%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++LL++D + + L++ G+V + V+DGR L LA ++ Y I+LDIMLP +DG + Sbjct: 11 RVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIE 70 Query: 62 ILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + + LR+ +TP++ ++A+ D+V L+ GA+DY+ KPFS ELLARV+A LR+ A Sbjct: 71 VCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 130 Query: 121 LNSTLEISG--------------LRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEI 166 EISG LR+ H V +D + LT KE++LL L Sbjct: 131 -----EISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMT 185 Query: 167 IPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFVAVK 222 + R + IWG +F +T VDV I +LR K++D P + I TIRG GY F +K Sbjct: 186 LTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELK 242 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 151 bits (382), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 132/238 (55%), Gaps = 23/238 (9%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +ILL+ED + V L + GY ++ V+ G + ++DY LIILD+MLPG+DG + Sbjct: 3 RILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDGLE 62 Query: 62 ILQTLR--TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR--- 116 + + +R ++ PVI LTA+ +++ GL+ GA+DY+ KPFS ELLARV+AQLR Sbjct: 63 VCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGRT 122 Query: 117 -----------------QHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLL 159 Q + L + + +N + LT KEF+LL ++ Sbjct: 123 KELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNIM 182 Query: 160 ASRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDP-FPEKLIATIRGMGY 216 + +G+++ R + +IWG +F DT TVDV IR LR K+ + P L+ T+RG+GY Sbjct: 183 VTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGY 240 >UniRef50_P0A4H9 Transcriptional regulatory protein dltR n=9 Tax=Streptococcus RepID=DLTR_STRA3 Length = 224 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 130/220 (59%), Gaps = 2/220 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED + E + L++ GY +D DG DGL L Y L++LDIMLP G Sbjct: 1 MRLLVVEDEKSIAEAIQALLADKGYSVDLAFDGDDGLEYILTGLYDLVLLDIMLPKRSGL 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +L+ +R A +TP+I LTA+ D+V GLD GA+DY+ KPF ELLAR+R + RQ Sbjct: 61 SVLKRVREAGLETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARIRLRTRQSS 120 Query: 120 ALNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + + L + +R+++ SH + S+ L+ KEF L+ + A +IIP+ + S++WG Sbjct: 121 LIRANQLRLGNIRLNTDSHELESKESSVKLSNKEFLLMEVFMRNAKQIIPKNQLISKVWG 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 + +S+ N ++V I LR K+ + I T +G GYS Sbjct: 181 PSDNSEYNQLEVFISFLRKKLRFLKADIEIITTKGFGYSL 220 >UniRef50_C3WHY2 Two-component response regulator n=8 Tax=Fusobacterium RepID=C3WHY2_9FUSO Length = 236 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 120/221 (54%), Gaps = 6/221 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 +KILL+ED++ Q +T L Y++D+ DG G+ L ++ Y +++LD+MLP G Sbjct: 14 IKILLVEDDKNIQRLLTLELRHKEYLVDSAYDGEQGMELFERNYYDVVLLDLMLPKKSGK 73 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 ++ Q R TP+I +TA+DS+ D+V LD GANDY+ KPF+ ELLAR+R R Sbjct: 74 ELCQEFRKLNNTPIIVITAKDSILDKVELLDLGANDYICKPFAMEELLARIRVATRNKEN 133 Query: 121 L---NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 LE +++D + V I LT+ EF +L G R I ++W Sbjct: 134 FVDKQFYLE-KDIKLDLSAKRVYLREEEINLTKTEFLILEYFMKNKGLSCSREKIIIDVW 192 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 G +FD + VDV I LR K+D + I TIRG GY F Sbjct: 193 GYDFDGEEKIVDVYINSLRKKID--LDNRYIHTIRGFGYMF 231 >UniRef50_Q020N6 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q020N6_SOLUE Length = 250 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/227 (40%), Positives = 136/227 (59%), Gaps = 9/227 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 ILL+ED+ +T ++ G+ ++A DGR GL A++ + LIILD+MLP +DG+++ Sbjct: 27 ILLVEDDTELTSLMTDYFAQHGFQVEAAHDGRTGLARAIEGSFDLIILDVMLPVLDGFEV 86 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 L+ LR TPVI LTAR S DRV GL+SGA+DYL KPF ELLAR+RA LR+ + Sbjct: 87 LRQLRKRSATPVIMLTARISQSDRVAGLNSGADDYLPKPFGPDELLARIRAVLRRTGHTD 146 Query: 123 ST----LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + +E +GLR+D + +V +I +T EF +L +L AG + R + + ++ Sbjct: 147 AAPPQIVESAGLRIDPAARAVWDHGEAIEITSIEFDILEILVRSAGRTVTRDELTAVLYQ 206 Query: 179 INFDSDTNTVDVAIRRLRAKV--DDPFPEKLIATIRGMGYSFVAVKK 223 ++DV I LR K+ DD +I TIRG+GY F+A ++ Sbjct: 207 RPATPYERSLDVHISHLRKKLERDD---RSVIRTIRGVGYQFMAGER 250 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 127/222 (57%), Gaps = 5/222 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +ILL+ED + ++ V L Y + AV DG+D L K + L+ILD+MLP + G + Sbjct: 10 RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGER 69 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA- 120 + + +R P+I LTA+ V+DR+ GL+ GA+DYLVKPFS EL+ARVRA LR+ HA Sbjct: 70 VCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHAD 129 Query: 121 ---LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 LE L +D H V + LT EF+LL L+ G + R + ++ Sbjct: 130 SEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKVL 189 Query: 178 GINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSF 218 G +F+ T+D ++ LRAK+ D+P K + T+ G+GY F Sbjct: 190 GYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRF 231 >UniRef50_B8IU63 Two component transcriptional regulator, winged helix family n=20 Tax=Proteobacteria RepID=B8IU63_METNO Length = 225 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 91/223 (40%), Positives = 128/223 (57%), Gaps = 4/223 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED Q E + L G+ +D DG G + Y L+ILD+ LPG+DG+ Sbjct: 1 MRILLVEDTQDVGEAIVARLRTLGHAVDWERDGAMGDAVLEVQPYDLVILDVNLPGLDGF 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 IL+ +R + +TPV+ LTAR VDDRV LD GA+DYLVKPF F EL ARVRA LR+H Sbjct: 61 AILKRMRARRGRTPVLVLTARSEVDDRVGALDLGADDYLVKPFDFRELEARVRALLRRHS 120 Query: 119 -HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 HA N+ + L +D + S S + LTR+E+ L+ +LA+R G I + + + Sbjct: 121 GHADNA-IACGNLSLDRAARSASVGGQPLDLTRREWTLIEILAARPGRIFGKAELLDRLS 179 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 + N ++ + RLR K+ E I T+RG+GY V Sbjct: 180 TFEEEPSENALEQIVARLRRKLAQAGAEPEIRTLRGLGYQVVC 222 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 84/227 (37%), Positives = 129/227 (56%), Gaps = 13/227 (5%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+++D++ V L G+ +D DG+ G K +Y +ILDIMLP MDGW+ Sbjct: 5 QVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGWE 64 Query: 62 ILQTLRTA---KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 + +R + + P+I LTA+ DD++ GL GA+DY++KPFS EL+ARVRA +R+ Sbjct: 65 VCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRRD 124 Query: 119 HAL---NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 + LE L +D+ S+ V + + L KEF+LL+LL + R I + Sbjct: 125 QDFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEK 184 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPE----KLIATIRGMGYSF 218 IWG +F T TVD ++R+R K++ PE LI T+ G+GY F Sbjct: 185 IWGFSFAGGTRTVDEHVKRIRKKLE---PESGFDSLIQTVWGVGYKF 228 >UniRef50_B0KKE4 Two component transcriptional regulator, winged helix family n=22 Tax=Proteobacteria RepID=B0KKE4_PSEPG Length = 222 Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 127/223 (56%), Gaps = 7/223 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++LL+EDN + +T GL GY +D ++DGRD +Y + Y LIILD+ LPG+ G Sbjct: 1 MRLLLVEDNVPLADELTAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGL 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++L R A TPV+ LTAR S +R+ GL +GA+DYL KPF EL R++A LR+ Sbjct: 61 EVLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRRAR 120 Query: 120 AL--NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 L LE +GL +D VSRD + I LT EF+LL +I+ ++ +A ++ Sbjct: 121 GLANQPKLEAAGLHLDESRQCVSRDGVDIQLTAAEFRLLRYFMLHPQQILSKSHLAEHLY 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 + D+N ++V + LR K+ +I T RG GY + Sbjct: 181 DGETERDSNVLEVHVNHLRRKLG----RSVIETRRGQGYIYAG 219 >UniRef50_C0A842 Response regulator receiver protein n=5 Tax=Bacteria RepID=C0A842_9BACT Length = 263 Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 94/226 (41%), Positives = 139/226 (61%), Gaps = 11/226 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDG--RDGLYLALKDDYA--LIILDIMLPGM 57 +IL++ED+ T + GL+ G+ + S+G D A + L+ILD MLPG+ Sbjct: 5 RILVVEDDDGTTRSLAAGLAAEGFEVRTASNGGAADASLAAHPSESPADLVILDWMLPGI 64 Query: 58 DGWQILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR 116 DG +L+ LR ++ PV+ LTARD++DDRV+GL++GA+DYL KPF+F+ELLARVRA LR Sbjct: 65 DGITLLRRLRARGQRMPVLLLTARDAIDDRVQGLEAGADDYLAKPFAFAELLARVRALLR 124 Query: 117 QHHALNSTLE--ISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 + + ++ L ++ + V+R +I LT +EF LL L+ GE + R +A Sbjct: 125 RFTTPREPWQRSVADLAINLETRLVTRAGRTIDLTPREFDLLSYLSLHQGEAVSRDQLAR 184 Query: 175 EIWGINFDSDT--NTVDVAIRRLRAKVDDPFP--EKLIATIRGMGY 216 EIW N + N +DV I RLR K+D+ P EKL+ T+RG+GY Sbjct: 185 EIWRENNRATPIDNVIDVHIARLRRKIDEASPGAEKLLHTLRGLGY 230 >UniRef50_C6JKI6 DNA-binding response regulator n=3 Tax=Bacteria RepID=C6JKI6_FUSVA Length = 225 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 132/221 (59%), Gaps = 5/221 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M IL+ + + ++++ +GL EAGY ++ SD D Y A+ +Y L+ILD ++ G Sbjct: 1 MNILIAQKDMEIKKYLKKGLKEAGYSVEESSDWEDTYYHAISGNYELVILDSIIEDKSGI 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++ +R ++ +I +++ D V+ +V D+GA+DY+ KPFSF ELL R+RA +R+ Sbjct: 61 ELCGKIRKENTESGIIFISSEDRVEKKVEAFDAGADDYVTKPFSFIELLGRIRAIIRRTI 120 Query: 120 AL----NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 N+ + I L ++ ++ V R N I LT KEF LL L ++ RT+I + Sbjct: 121 KTSVVGNNIITIKDLSINFLTREVRRGNKIIELTYKEFSLLEYLVRNKNLVLSRTMIKEK 180 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 IW INF S+TN VDV + LR+K+D EKLI T+RG+GY Sbjct: 181 IWSINFTSNTNIVDVYMTHLRSKIDKNHKEKLIYTVRGVGY 221 >UniRef50_C7IFX1 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=C7IFX1_9CLOT Length = 217 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 83/214 (38%), Positives = 125/214 (58%), Gaps = 6/214 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL++ED E V + L G+ ++V DG + Y LIILDIMLPG+DG+++ Sbjct: 4 ILIVEDEVAINELVKRNLQLVGHQCNSVFDGNAAVQEIQCRSYDLIILDIMLPGLDGFEV 63 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 ++ A +TP I L+A++S+ DR++G GA+DYL KPF ELLARV A LR+ Sbjct: 64 IEQ---ANKTPTIFLSAKNSMPDRIKGFSMGADDYLTKPFEMLELLARVEAVLRRTQRTA 120 Query: 123 STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFD 182 S E +++D SH V + S+ T KE++LL +L + + R + +WG +F+ Sbjct: 121 SCFEAGNVKIDFSSHQVFHNGQSVECTPKEYELLEVLVNNRNIALSRERLLELVWGYDFE 180 Query: 183 SDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 DT TVDV I++LR K++ E I T+ +GY Sbjct: 181 GDTRTVDVHIQKLRKKLE---WEDRIKTVYKLGY 211 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 9/229 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 +KIL++ED+ + + L + GY I+ G + + ++Y ++I+DIM+P MDG Sbjct: 4 LKILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGI 63 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + ++ +R + P+I L+A+ D++ GL GA+DY+VKPFS EL+ARV+ +R+ Sbjct: 64 ESMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123 Query: 121 LNST--------LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 N T E ++ D +++V++ +TLT KE ++L L + + I Sbjct: 124 YNETKSIKENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFVA 220 +WG F SD NTV V +RRLR+K+ DDP KLI T+ G+GY Sbjct: 184 YDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKLTG 232 >UniRef50_B9CM45 DNA-binding response regulator n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CM45_9ACTN Length = 257 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 87/218 (39%), Positives = 130/218 (59%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 +KIL++ED + + +GL GY +D + +G + L +A + Y LI+LD+ LPG+DG Sbjct: 29 LKILVVEDERELLTSIGEGLEIDGYYVDLIDNGTEALEMAQIEQYDLILLDLNLPGVDGL 88 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +L+TLR +T V+ L+AR SV DR+ GLD+GA+DYLVKPF+F EL AR+R LR+ + Sbjct: 89 DLLRTLRREHSETKVLILSARSSVADRIVGLDAGADDYLVKPFAFGELEARIRNLLRREY 148 Query: 120 ALNSTLEISG-LRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 T +SG LR+D+ S V + + LT+KE +L L RAG ++ + S W Sbjct: 149 THGETSLVSGELRLDTASRQVFAKDSEVNLTKKETAILEYLMRRAGTVVSSEELLSHAWD 208 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 N D +N+V V I +R K+ + I+ G GY Sbjct: 209 SNVDPFSNSVRVHIFSVRKKLREVLGYDPISNKVGEGY 246 >UniRef50_B8HQE6 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8HQE6_CYAP4 Length = 228 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 128/221 (57%), Gaps = 10/221 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL++ED R +V +GL G+V +D + L LAL + L+ILD+ LPG DG Q Sbjct: 3 RILIVEDEPRIAAFVEKGLRSHGFVTSVATDANEALDLALGGAFDLLILDLGLPGQDGLQ 62 Query: 62 ILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 +L LR ++ P+I LTARD + D++ + GA+DYL KPF F ELL RV+A+LR ++ Sbjct: 63 VLGQLRGQGESLPIIILTARDDIRDKIASFEGGADDYLTKPFRFEELLLRVKARLRTNYG 122 Query: 121 LNSTLEISGLRMDSV-----SHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 + E S L+ D+V + V + + L+ +EF L G+++ R + Sbjct: 123 VPKRQEESVLKCDNVLLDLRTRKVKVGDRWLELSAREFTLAETFFRHPGQVLSREQLLDR 182 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +WG ++D +N VDV + LR K+ + +LI T+RGMGY Sbjct: 183 VWGYDYDPGSNIVDVYVGYLRKKLGN----ELIETVRGMGY 219 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 124/222 (55%), Gaps = 5/222 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL+IED + + L GY + +DG +GL + + L++LD+M+P +DG+ Sbjct: 3 RILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGFA 62 Query: 62 ILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + LR A P++ LTA+ ++DRV GLD+GA+DYLVKPFS ELLARVRA LR+H Sbjct: 63 LCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRHQR 122 Query: 121 LN---STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 +TL + +D V + R + T KE+ +L LL+ GE I R +W Sbjct: 123 EKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDVVW 182 Query: 178 GINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 G T TVD I LRAK++ DP + I T+ G+GY Sbjct: 183 GYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRL 224 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 90/230 (39%), Positives = 128/230 (55%), Gaps = 14/230 (6%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDD--YALIILDIMLPGMDG 59 ++L++ED+ ++ V LS G + V DG L L L D + L++LD+MLPGMDG Sbjct: 3 RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALEL-LSDSKPFDLVLLDVMLPGMDG 61 Query: 60 WQILQTLRTA----KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQL 115 + + LR + + PV+ LTARD V GL+ GA+DY+ KPFS +L +RVRAQL Sbjct: 62 ISVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQL 121 Query: 116 R------QHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPR 169 R Q LE GL +D + V+ + LT +EF++L LLAS G + R Sbjct: 122 RRQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSR 181 Query: 170 TVIASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 I +WG F + + DV I+ LR K++ DP + I T+RGMGY F Sbjct: 182 EQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRF 231 >UniRef50_B1HMR9 Response regulator n=1 Tax=Lysinibacillus sphaericus C3-41 RepID=B1HMR9_LYSSC Length = 225 Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 125/220 (56%), Gaps = 2/220 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKILL ED+ R ++ + L + + + V +G D L + + L+ILD M+P + G Sbjct: 1 MKILLAEDDARLRKNIVYILRKEFHHVIEVDNGLDALDHTFSESFDLLILDWMMPQLSGL 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR-QH 118 ++ + LR T ++ LTA+D D ++GLDSGA+DYLVKPF ELLAR+RA LR + Sbjct: 61 EVCKQLRDTGFSGGILMLTAKDDTSDIIQGLDSGADDYLVKPFKMEELLARIRAVLRRKE 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + +++ L+++ S RDN I LT+ EF LL L G ++ R I IWG Sbjct: 121 KVIEQVIQVENLQLNIDSRVFLRDNTEIELTKNEFALLEFLFINKGHVLTREQICIYIWG 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +FD N++D ++ +R K+D + I +RG+GY Sbjct: 181 YDFDVSNNSLDALVKLVRKKIDTSHEKSHIQNVRGIGYKL 220 >UniRef50_A5FJG2 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteroidetes RepID=A5FJG2_FLAJ1 Length = 228 Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 126/220 (57%), Gaps = 4/220 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M +L++EDN+ V LS+AGY+ ++ D L +DY ++LD+ LP DG+ Sbjct: 5 MNVLIVEDNKELAVEVYDFLSKAGYICKIANNCADALEEFGSNDYDAMLLDLGLPDGDGF 64 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++LQT+R K + VI LTAR +DDR+ GL GA+DYL KPF+ +EL AR+ A +R+ H Sbjct: 65 EVLQTIRKTKSKIAVIVLTARGELDDRINGLHLGADDYLTKPFALTELAARLFAVIRRIH 124 Query: 120 ALN-STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + L I G + + VS + + ++LT+KEF + L +I R + IWG Sbjct: 125 GFTLNNLSIHGFLLQLQDYKVSFNEVPLSLTKKEFDIFQYLVLNKNRVITRLQLTEHIWG 184 Query: 179 --INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 + +SD+N +DV +R LR K+D T+R +GY Sbjct: 185 DILEINSDSNFIDVHVRNLRKKLDKHTSIDWFETVRNVGY 224 >UniRef50_Q5SIK7 Response regulator n=12 Tax=Deinococci RepID=Q5SIK7_THET8 Length = 227 Score = 149 bits (377), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 83/216 (38%), Positives = 122/216 (56%), Gaps = 1/216 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +ILLIED+ V L EAG+ +D G +GL + L++LD+ LP +DG + Sbjct: 3 RILLIEDDPEVARLVEAELKEAGFQVDWAKTGMEGLIRHREGKPDLVVLDLGLPDLDGAE 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + + +R TP++ LTA+D+VD +V L GA+DYLVKPF +ELLAR++ QLR H Sbjct: 63 VARRIRATDDTPILVLTAQDAVDRKVSLLTGGADDYLVKPFHPAELLARIQVQLR-HKEG 121 Query: 122 NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINF 181 + L + L + V + L+ KEF LL LL SR G + PR I +WG Sbjct: 122 SEVLAVGQLELYPGKRQVFFREREVRLSPKEFDLLHLLMSRPGRVFPRPEIEERVWGRPL 181 Query: 182 DSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 D+N +DV + LRAK+ + + T+RG+GY+ Sbjct: 182 GKDSNVLDVHMANLRAKLREAGAYGYLRTVRGVGYA 217 >UniRef50_B4B6S6 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4B6S6_9CHRO Length = 638 Score = 149 bits (377), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 85/218 (38%), Positives = 129/218 (59%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED+ T+ +TQ LS Y +D DG+ GL LA +Y L +LD+++P +DG Sbjct: 1 MRILLMEDDPLTRTVLTQTLSNHHYNVDVAKDGKSGLQLAQTYNYDLFLLDVVVPVLDGI 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + Q LR+ Q P++ LTA+DS D++ GLD+GA+DY++KP + L+AR+RA LR+ + Sbjct: 61 SVCQQLRSQGLQEPIVLLTAKDSSSDQIIGLDAGADDYIIKPVNLETLMARIRALLRRKN 120 Query: 120 A-LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 A L+S +E L+++ + V+ +N I LT KE+ LL L I R VI +W Sbjct: 121 ASLSSVIEWGNLQLNLSNCEVNCENEPIHLTAKEYALLELFLVNPKRIFNRRVILERLWD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 I TV I+ LR K+ + I T+ G+GY Sbjct: 181 IGESPGEETVSTHIKCLRQKLKNAGVSDPIETVYGLGY 218 Score = 41.6 bits (96), Expect = 0.021, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 3/74 (4%) Query: 41 LKDDYALIILDIML--PGMDGWQILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDY 97 L+ A+IILD+ DG+ +L+ L ++ P+I T R+S++DR++ GA + Sbjct: 432 LQKTPAIIILDLNFDSASEDGFTLLEELNQSRPNLPIIIFTGRESLNDRIKVARLGAKAF 491 Query: 98 LVKPFSFSELLARV 111 L KP + ++L V Sbjct: 492 LHKPLAAHQILKTV 505 >UniRef50_B2IER4 Two component transcriptional regulator, winged helix family n=9 Tax=Proteobacteria RepID=B2IER4_BEII9 Length = 277 Score = 149 bits (375), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 125/219 (57%), Gaps = 3/219 (1%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 ILL+ED + L++ GY + G GL A +L+I+D MLP DG + Sbjct: 57 ILLVEDEADMASEIAAELTKLGYHVQIEETGPAGLAAARSQAMSLLIIDRMLPETDGLTL 116 Query: 63 LQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH--H 119 ++TLR TPV+ ++A SVD+++RGL +G +DYL KPF+ EL ARV A LR+ Sbjct: 117 IETLRQEGILTPVLVVSALGSVDEKIRGLKAGGDDYLTKPFAMGELAARVEALLRRPAAE 176 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 A ++ L + L MD + +V R+ + L +EF+LL L R G+ + R ++ ++W Sbjct: 177 ARSAILRVGSLEMDLIERTVRRNERLLDLLPREFKLLEYLMRRPGQTVTRAMLLEDVWNY 236 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 NF TN VDV I +LR K+D P ++I ++RG G+ Sbjct: 237 NFLPQTNLVDVHIGKLRKKIDQPGEVQMIESVRGAGFRL 275 >UniRef50_A9KP45 Two component transcriptional regulator, winged helix family n=15 Tax=Bacteria RepID=A9KP45_CLOPH Length = 224 Score = 149 bits (375), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 78/223 (34%), Positives = 130/223 (58%), Gaps = 4/223 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLAL-KDDYALIILDIMLPGMDG 59 +K+L+++D R ++ V LS + Y + +G + + + D +LIILD+M+P MDG Sbjct: 4 LKVLVVDDESRMRKLVKDFLSRSNYDVLEAENGEQAVDIFFEQKDISLIILDVMMPKMDG 63 Query: 60 WQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 WQ+ + +R + P+I LTA+ D + G + G ++Y+ KPFS L+ARV A +R+ Sbjct: 64 WQVCKEIRKYSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVRRSI 123 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L+ T+EI G+ +D +H V D+++I L+ KEF+LL + G + R I + +W Sbjct: 124 QTLDETMEIGGIVIDKAAHEVKIDDLAIELSVKEFELLTYFITNRGVALSREKILNNVWN 183 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 ++ D T+D +++LR+K+ D I TI GMGY F V Sbjct: 184 YDYFGDARTIDTHVKKLRSKMGD--KGDYIKTIWGMGYKFEVV 224 >UniRef50_Q15Y65 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=Q15Y65_PSEA6 Length = 222 Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 126/219 (57%), Gaps = 6/219 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED++ + ++Q L GY ++ L ++ ++ILD+ LP MDG Sbjct: 1 MRILLVEDDRSLSDALSQSLRSEGYAVNGACTAAQALSALATGEFTIMILDLGLPDMDGL 60 Query: 61 QIL-QTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-H 118 ++L Q R P + LTARDS+ D++ GLDSGA+DYL KPF ELLAR+R R+ Sbjct: 61 EVLRQAHRNKHSVPTLILTARDSMTDKITGLDSGADDYLAKPFDMQELLARLRVMERRLG 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 A +S + I + +D +H V+ DN L+R+EF LL L AG I ++ + ++++ Sbjct: 121 TATSSLINIGNVVLDLATHQVTADNNEKELSRREFMLLKALMENAGRIQSKSQLETKLYE 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 + +N ++V I LR K P+ I TIRG+GYS Sbjct: 181 WGDELSSNAIEVHIHNLRKK----LPKDFIKTIRGVGYS 215 >UniRef50_Q3Z755 DNA-binding response regulator n=2 Tax=Dehalococcoides RepID=Q3Z755_DEHE1 Length = 225 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 91/218 (41%), Positives = 135/218 (61%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+LLIED+ + +T GL E GY ++ S+G+ G +AL + +IILDIMLP +DG+ Sbjct: 3 MKLLLIEDDANLAKVITSGLEENGYAVNWESNGKLGAEMALAYTFDVIILDIMLPELDGF 62 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + +R+ QTP+I LTAR D+V GL+ GA+DYLVKPFSF ELLAR+RA LR+ + Sbjct: 63 AVCHKIRSNGNQTPIIMLTARYQEADKVNGLNCGADDYLVKPFSFPELLARLRALLRRAN 122 Query: 120 ALNS-TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 +S ++++ L +++V D I LT KE+ +L L II + +I IW Sbjct: 123 NQHSPSIKLRKLTLNTVDRRAFYDGREIELTAKEYGILEYLVLNKNCIITKNMIEEHIWE 182 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 D +N ++V I R+R K+D+ LI T++G+GY Sbjct: 183 SESDIFSNVIEVLISRIRKKLDNNNKNSLIKTVKGLGY 220 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 124/222 (55%), Gaps = 7/222 (3%) Query: 4 LLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQIL 63 L++ED+ E V L + +D DG+ GL +A+ Y LIILD+MLP +DGW+I Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 64 QTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ--- 117 + LR + TP+I LTA++ D+V GL GA+DYL KPF E LARV A LR+ Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 118 HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 ++ + TL L + S+ + ++ LT KEF+LL +LA AG + R + ++W Sbjct: 129 YNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQVW 188 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFP-EKLIATIRGMGYSF 218 G + T T+D I+RLR K+ P + T+ G+GY Sbjct: 189 GYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKL 230 >UniRef50_B8I8Q2 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I8Q2_CLOCE Length = 231 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 80/221 (36%), Positives = 132/221 (59%), Gaps = 6/221 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L+++D++ +E + + GY + SDG++GL LA +++YA+I+LD+M+P MDG+ + Sbjct: 6 MLVVDDDEDIREMIGTYFTREGYKVCFASDGKEGLELAKQNNYAIILLDVMMPQMDGYTM 65 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL- 121 L LR TPVI LTA+ +V+G G +DYLVKPF F+EL R++A L++ + + Sbjct: 66 LANLRLFSDTPVILLTAKGEQMSKVKGFTKGCDDYLVKPFDFAELSLRIQAILKRVNDVV 125 Query: 122 ----NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + L + L++D HSV ++ I + LT KE+++L +LAS G + ++ IW Sbjct: 126 IKEEPNILIVKDLKIDLEGHSVKKNGIELELTSKEYKILRILASNRGRVYSTKMLYEIIW 185 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYS 217 F + N+V +R LR K+ D + + I TI G GY Sbjct: 186 KEPFLENDNSVITHMRNLRDKIGDKVKDSRYIRTIWGTGYK 226 >UniRef50_B0TXH6 Response regulator receiver protein n=18 Tax=Francisella RepID=B0TXH6_FRAP2 Length = 228 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 76/222 (34%), Positives = 129/222 (58%), Gaps = 9/222 (4%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++LL ED+ E + + L + G +++ VSDG Y +++LDI +P G Sbjct: 1 MRLLLAEDDLNLGEGLLEALQKEGLIVNLVSDGEAAQTFIESGLYDIVVLDIGMPIKTGL 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRA-----Q 114 ++L+ +R + P+I LTARD ++DR++GLD GA+DYL KPF EL+AR++A Sbjct: 61 EVLRNVRNKGIKVPIILLTARDGLEDRIKGLDLGADDYLTKPFELKELVARIKAISRRID 120 Query: 115 LRQHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 R + ++ + S +V++D + I +++KE LL +L AG ++P+T + Sbjct: 121 TRSGKSTKEEIKFGDYSFNPSSETVTKDGVIIPVSKKELALLAILVQNAGRVVPKTQLLE 180 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 E++ + + DTNT++V + LR K++ P I TIRG+GY Sbjct: 181 EVYSTDKEMDTNTLEVHMHNLRKKINIP---NFIQTIRGVGY 219 >UniRef50_B9CPY7 DNA-binding response regulator n=3 Tax=Staphylococcus RepID=B9CPY7_STACP Length = 225 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 78/215 (36%), Positives = 125/215 (58%), Gaps = 1/215 (0%) Query: 4 LLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQIL 63 L+++D+++ ++V L + A G + L+ K++ A+ I+DIM+ G++G+++ Sbjct: 6 LVVDDDRKILDYVKSHLINEHFETHAFLSGEEALHFLEKENVAIAIVDIMMNGINGFELC 65 Query: 64 QTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH-ALN 122 +TL+ PVI LTARD++ D+ R SG +DY+ KPF ELL R++A LR++ Sbjct: 66 KTLKEDYDIPVIMLTARDALSDKERAFLSGTDDYVTKPFEVKELLFRIKAVLRRYQINAE 125 Query: 123 STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFD 182 S L++ L ++ ++ D +I L KEFQLL+LL S I R I +IWG +++ Sbjct: 126 SELKLGNLTLNQPYMEINVDAKTINLPNKEFQLLFLLVSNPKHIFTRNDIIEKIWGFDYE 185 Query: 183 SDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 D TVDV I+RLR K+ I T+RG GY Sbjct: 186 GDDRTVDVHIKRLRQKLSRLGASISIHTVRGQGYK 220 >UniRef50_C6CH89 Two component transcriptional regulator, winged helix family n=2 Tax=Dickeya RepID=C6CH89_DICZE Length = 232 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 85/218 (38%), Positives = 130/218 (59%), Gaps = 6/218 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+L++ED+ QE + Q + GYV D S ++ L Y+L++LD+ LP DG Sbjct: 1 MKLLIVEDDALLQEGLLQAMRNEGYVCDCASTAKEADALIASAHYSLVVLDLGLPDEDGL 60 Query: 61 QIL-QTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +L + R Q PV+ LTARD+VDDRV GLD GA+DY++KPF+ SE ARVRA +R+H Sbjct: 61 TLLGRWRRNHYQQPVLILTARDTVDDRVTGLDVGADDYMIKPFALSEFQARVRALIRRHQ 120 Query: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + +S + + + +D + V D+ I LT KEF +L L +AG + R V+ +++ Sbjct: 121 GSSDSWIRVDNITLDLNNQQVMLDDKPIVLTPKEFAILSRLILKAGSQVHREVLHQDLYS 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 + D +N+++V I LR K+ + I T+RG GY Sbjct: 181 WDDDPSSNSLEVHIHNLRQKI----GKNRIKTLRGFGY 214 >UniRef50_C3RN03 Response regulator arlR n=3 Tax=Bacteria RepID=C3RN03_9MOLU Length = 224 Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 77/221 (34%), Positives = 128/221 (57%), Gaps = 4/221 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+L+IED+ + + L+ Y +D++ DG+D L ++Y L+++D MLP DG Q Sbjct: 3 KLLIIEDDVSINKILCHELTNKDYQVDSLYDGKDACKQILSNEYDLVLVDWMLPYKDGVQ 62 Query: 62 ILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 I+Q R P+I LTAR +D ++GL+SGA+DYL+KPF + L+AR+ A LR++H Sbjct: 63 IIQECRNNGYIKPMILLTARSEQEDIIKGLESGADDYLMKPFQANILIARIEAHLRRYHK 122 Query: 121 -LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 ++ ++MD H V + I LT+ E+ LL + E++ R + +IW Sbjct: 123 HFKGIIKYLDIKMDLSKHEVFVGDELINLTKVEYDLLQMFIDNKEEVLSRQELLMKIWNF 182 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 N+D DT VD+ + +L+ K+ D + ++RG+GY V+ Sbjct: 183 NYDGDTRLVDIHVFKLKTKLKD--SQACFQSVRGVGYKLVS 221 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 83/217 (38%), Positives = 128/217 (58%), Gaps = 4/217 (1%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L++EDN ++ + + L E GY + S+G++GL A L++LD+M+PGMDG + Sbjct: 25 VLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDGLEF 84 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA-- 120 L+ R +Q PVI LTARD+ D+V GL+ GA+DY+ KPFS +ELLARVRA LR+ Sbjct: 85 LRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRSSEPL 144 Query: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 N+ L L +D + + + LTR EF+L+ G + R + ++ Sbjct: 145 PNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRLELLEQLQEEA 204 Query: 181 FDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGY 216 S+ T+DV +R LRAK++ +P +LI T+ G+GY Sbjct: 205 LGSE-RTIDVHVRNLRAKIEAEPGKPRLIETVFGVGY 240 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 148 bits (373), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 87/227 (38%), Positives = 128/227 (56%), Gaps = 10/227 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+L+IED+ V LS+ G D DG G+ AL ++Y +IILD+MLP +DG + Sbjct: 5 KVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGLE 64 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + Q LR P++ LT+R DD+V L++GA+DY+ KPFS EL ARV A +R++ Sbjct: 65 VCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRYRP 124 Query: 121 ------LNS--TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 +NS T GL +D+ +H V+ + I +T KEF LL L G RT + Sbjct: 125 EKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRTEL 184 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSF 218 +WG ++ +TV+ I RLR K+++ P K I T+ G+GY F Sbjct: 185 LDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKF 231 >UniRef50_B2V7S5 Two component transcriptional regulator, winged helix family n=2 Tax=Sulfurihydrogenibium RepID=B2V7S5_SULSY Length = 220 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 84/219 (38%), Positives = 141/219 (64%), Gaps = 6/219 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++LL+ED++ + +GL E G+++D VS+G ++Y +I+LD+MLP DG Sbjct: 1 MRLLLVEDDKTLGRLIKKGLEEEGFLVDLVSNGATAEEYLNTENYEVIVLDLMLPEKDGL 60 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 IL++LR TPV+ LTA+ SV+D+++GL++GA+DYL KPF F EL+AR++A +R++H Sbjct: 61 SILESLRNRGICTPVLILTAKGSVEDKIKGLNAGADDYLAKPFDFQELVARIKALIRRYH 120 Query: 120 ALNSTLEISG-LRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 ++ + G + +D V+ +V + LT E +LL +LA ++ I+ +T I ++G Sbjct: 121 NVSKGMVSFGDVEVDLVNQNVKVKGKDVELTAMELKLLMMLALKSNRILSKTYIEQSLYG 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGY 216 D+N ++V I RLR K+D P+ K I T++G+GY Sbjct: 181 WEGSPDSNVIEVLISRLRKKLD---PKGKYIKTVKGLGY 216 >UniRef50_UPI0001B559F0 two-component system, response regulator n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B559F0 Length = 247 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 123/223 (55%), Gaps = 7/223 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L++ED+ + +T L AGY + + SDGR ++ A LI+LD+MLP DG+++ Sbjct: 13 VLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGFRL 72 Query: 63 LQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + LR TPV+ LTAR V+DR+ GL SG +DY+ KPF E+L RVRA LR+ A Sbjct: 73 TRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGAP 132 Query: 122 NST------LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 ST L +GL +D +H V + L+ EF+LL + ++ + I Sbjct: 133 ASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQR 192 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +W +F DT VD ++ LR K+D L+ T+RG+GY Sbjct: 193 VWRYDFSGDTRIVDTYVKNLRRKLDHGGAPALLHTVRGVGYCL 235 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 81/224 (36%), Positives = 131/224 (58%), Gaps = 8/224 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 +K+L+IED+ E + + +AGY + SDG +GL L + IILDIMLP ++GW Sbjct: 5 IKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPKLNGW 64 Query: 61 QILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++ +T+R + P+I LT + D ++GL+ GA+DY+VKPF +EL+ARV+ LR+ Sbjct: 65 EVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLRR-- 122 Query: 120 ALNSTLEISGLRMDSV-----SHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 + S E L+ D++ + V +N + + KE +L + LA +++ R + Sbjct: 123 TILSESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQQLLD 182 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +WG F+ D TVDV I+R+R K+ + + I TIRG+GY F Sbjct: 183 RVWGYEFNGDPRTVDVHIKRIRDKLAEHKAKWSIVTIRGVGYRF 226 >UniRef50_C1DUD1 Transcriptional activator protein IrlR n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DUD1_SULAA Length = 222 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 136/220 (61%), Gaps = 3/220 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+L+IED ++ + + +GL E +++D V G++ L Y IILD+MLP + G Sbjct: 1 MKVLIIEDEKKLGKLIKKGLEEESFIVDLVHTGKEALDFLTTQSYDAIILDLMLPDISGK 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +L +R + +TPVI LTA+D V D++ LD+GA+DY+ KPF F ELLAR+RA +R+ Sbjct: 61 DVLIKIRNSSIKTPVIVLTAKDEVKDKIELLDAGADDYITKPFDFDELLARIRAVVRRDK 120 Query: 120 ALNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + S+ + I L +D +V + I L+ KE+ LL G+I+ + + + ++ Sbjct: 121 DIKSSVISIGDLEIDLSKSTVKKSGNLIKLSSKEYLLLRYFIFNRGKILTKDNLINAVYD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 ++F+ ++N ++V I RLR+K++D K I +IRG+GY F Sbjct: 181 LSFELNSNALEVLISRLRSKIEDE-NHKYIKSIRGLGYIF 219 >UniRef50_B6J7N7 Transcriptional regulatory protein n=8 Tax=Gammaproteobacteria RepID=B6J7N7_COXB1 Length = 232 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 129/220 (58%), Gaps = 8/220 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDG--LYLALKDDYALIILDIMLPGMD 58 M++LL+ED++ + + GL + G+ ID V DG+ + + + + +IILD+ LP Sbjct: 10 MRVLLVEDDEFLGDGIRAGLKQYGHTIDWVRDGQAAHDVLSSTHETFDIIILDLGLPKRS 69 Query: 59 GWQILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRA-QLR 116 G +L+T+R TPV+ LTARD+VDDR++GLD+G++DY+ KPF EL AR+RA Q R Sbjct: 70 GLDVLKTIREKNDPTPVVILTARDTVDDRIKGLDAGSDDYMTKPFDLEELCARMRAMQRR 129 Query: 117 QHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + + +D SH V+ + ++R+EF LL L AG +I R + + Sbjct: 130 SKERAKPIISHGDITLDPASHVVTFKKKEVMVSRREFALLQKLLENAGRVISREQLNQTL 189 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +G + D+N ++V I LR + F KLI TIRG+GY Sbjct: 190 YGWGENIDSNALEVHIHNLRKR----FGAKLIRTIRGVGY 225 >UniRef50_C7RF78 Two component transcriptional regulator, winged helix family n=3 Tax=Anaerococcus RepID=C7RF78_ANAPD Length = 223 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 124/219 (56%), Gaps = 2/219 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+L++ED ++ + +GLS GYV D DG++ L LA +DY +IILDI LP DG+ Sbjct: 1 MKVLIVEDERKLLRLLDEGLSLLGYVTDMARDGKEALDLAFVEDYDIIILDINLPKKDGF 60 Query: 61 QILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++L+ +R K+ +I LTAR +DDRV+GLD GANDY+ KPF EL AR+R+ LR+ Sbjct: 61 EVLRDIRQFDKEVNIIMLTARSDIDDRVKGLDFGANDYMTKPFDLKELDARMRSLLRRKS 120 Query: 120 ALNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + + I G+ D+V V + +TLT KE ++ L + + + +W Sbjct: 121 IMEEKDITIDGITFDTVKREVIFEGSPLTLTAKETGIIEYLFLNRERYVSVEELMNHVWD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 N D +NTV V + LR K+ + I + G GY Sbjct: 181 SNADDFSNTVRVHMSSLRKKIKKATGKNYIENVIGKGYK 219 >UniRef50_A3QGG3 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=A3QGG3_SHELP Length = 226 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 80/218 (36%), Positives = 131/218 (60%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++LL+ED+ QE + Q L +A Y +D SDG +GL+ + Y I+D+ LP +DG Sbjct: 1 MRLLLVEDDLALQENLRQHLLDANYTLDIASDGEEGLFQGREYPYDAAIIDVGLPKLDGI 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++ LR P++ LTARD+ D+V GLD+GA+DYL KPF EL+AR++A +R+ Sbjct: 61 ALIARLREEGIDYPILILTARDNWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRRAA 120 Query: 120 ALNSTLEISG-LRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 +S + +G +++ SH + + ++L+ E++L GE+ ++++ I+ Sbjct: 121 GKSSPVIQNGPYSLNTSSHEIKFGDQDVSLSGSEYKLFEYFMLHIGEVKSKSILIEHIYD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +FD D+N ++V IRRLR K+D LI T+RG GY Sbjct: 181 QDFDLDSNVIEVFIRRLRKKLDPNGQYGLIETLRGQGY 218 >UniRef50_B1YFQ0 Two component transcriptional regulator, winged helix family n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YFQ0_EXIS2 Length = 225 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 85/218 (38%), Positives = 125/218 (57%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL+ ED++R + + L AGY +D DG + + Y L++LD M+P G Sbjct: 1 MRILIAEDDKRLAKMLRLHLERAGYQVDVAHDGLEAIEQCQTFRYDLLVLDWMMPHKSGI 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRA-QLRQH 118 ++ LR + + ++ LTARD+ D V GLDSGA+DYLVKPF +ELLAR+RA RQ Sbjct: 61 EVATELRGERFEGGILMLTARDTEIDLVHGLDSGADDYLVKPFQANELLARLRALSRRQK 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 A ST+ L +D + ++S + LTR+EF+ L LL R +++ R +I +WG Sbjct: 121 KAFVSTVSYQELELDITTQTISYAGQLLELTRREFEFLSLLLRRPEQVMGRELIIEVVWG 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 I D N +D +R +R K+D LI T+RG GY Sbjct: 181 IGADITDNALDALVRLVRKKLDAAGAPALIQTVRGFGY 218 >UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=Reinekea blandensis MED297 RepID=A4B9L9_9GAMM Length = 233 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 130/224 (58%), Gaps = 7/224 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 ILLI+D++ E + + L GY ++A G DG+ Y L++LD+M+PG+DG++ Sbjct: 6 ILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQIKHHHYDLVLLDVMMPGIDGFET 65 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR------ 116 L+ +R + PV+ LTA+ DR+ GL+ GA+DYL KP+S ELLAR++A LR Sbjct: 66 LKRIRESSIVPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLRRIELDK 125 Query: 117 -QHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 Q N L +G+ ++ ++ V D I +T EF++L +L SRAG+ +P+ + E Sbjct: 126 NQKEDDNGILACNGVELNFDTYRVYSDGEHIPMTTSEFKVLRVLMSRAGKAVPKEDLYLE 185 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 + G + ++D+ + +R K+ + I TIRG+GY FV Sbjct: 186 VLGREIMAYDRSIDMHVSNVRRKLGGTTEQSKIQTIRGIGYMFV 229 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 124/225 (55%), Gaps = 6/225 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 KIL+++D + ++ + L + Y S+G++ L L +D + L++LD+M+P MDG Sbjct: 6 FKILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGL 65 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 +R P+I LTAR DR+ GL GA+DY+ KPFS ELLAR+ A LR+ H Sbjct: 66 TACMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHR 125 Query: 121 L----NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 ++TL I L +D+ S SV I+LTRKEF LL L ++ R + +I Sbjct: 126 FTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLDQI 185 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 WG ++ + TVD I+ LR K+ + I T+ G+GY F V Sbjct: 186 WGADYIGNLRTVDTHIKTLRLKLGEAGGS--IQTVWGIGYKFEEV 228 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 124/222 (55%), Gaps = 6/222 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 ILL+ED+ E ++ AG+ + SDG GL +A + LIILD+MLPG+DG+ + Sbjct: 4 ILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGFSV 63 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 + + P++ LTA R+ GL+ GA DY+VKPFS ELLARVRA LR + Sbjct: 64 CRAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNERQR 123 Query: 123 ST-----LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 T L + +++D S V + I L+ KEF LL L AG + R ++ +W Sbjct: 124 QTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLERVW 183 Query: 178 GINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 G +F T+DV +R LR K++ DP LI T+RG+GY F Sbjct: 184 GSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCF 225 >UniRef50_C7Q2J4 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=C7Q2J4_CATAD Length = 254 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 89/233 (38%), Positives = 131/233 (56%), Gaps = 17/233 (7%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+++D + + L GY + DGR L + L++LD+++PGMDG Sbjct: 15 EVLIVDDEPGIRAVLASSLEFEGYAVRTAVDGRAALAEVERGRPDLVLLDVLMPGMDGLT 74 Query: 62 ILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ--- 117 + LRTA T PV+ LTARD DRV GLD+GA+DYL KPF ELLARVRA LR+ Sbjct: 75 ACRRLRTADPTLPVLMLTARDLTGDRVAGLDAGADDYLAKPFELDELLARVRALLRRGAL 134 Query: 118 --------HHAL---NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEI 166 AL + LE LRMD+++ V+R I LTR E+ LL + S + Sbjct: 135 TGEGAESGPGALSRDDHVLEYEDLRMDTLTREVTRAGRLIDLTRTEYLLLEMFLSHPRQA 194 Query: 167 IPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 + R I +WG +F+ +N++DV + +R K + D P +L+ T+RG+GY+ Sbjct: 195 LTREQILRAVWGFDFEPASNSLDVYVMYVRKKTEFDDLP-RLVQTVRGVGYAL 246 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 125/222 (56%), Gaps = 7/222 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D R +E + + L AGYV + DG L L + L+ILD+M+P MDG Sbjct: 74 KILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDGMT 133 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR---- 116 L+ +R TPVI LTAR D++ GL+ GA+DY+VKPFS EL+ARV+A L Sbjct: 134 CLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTMP 193 Query: 117 QHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + A + T+ L +D+ SH+V ++LT KEF LL LAS G + R I ++ Sbjct: 194 RSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQKV 253 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 W ++ + TVD ++ LR + IAT+ G+GY F Sbjct: 254 WNYDYFGEDRTVDTHVKMLRGHLGK--CRGYIATVWGIGYKF 293 >UniRef50_B5JWQ3 Two-component system regulatory protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JWQ3_9GAMM Length = 244 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 79/225 (35%), Positives = 127/225 (56%), Gaps = 5/225 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL++ED+Q + L G+ D +DG + LA ++ Y I+LDIMLPG DG+++ Sbjct: 20 ILIVEDHQDLAANIGDYLEAGGFAPDFAADGPSAVNLAAENPYDAIVLDIMLPGFDGYEV 79 Query: 63 LQTLR--TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + LR P+I LTARD +DD++ G + GA+DYL+KPF EL AR++A +R++ Sbjct: 80 CRRLRQQVGLSVPIIMLTARDQLDDKILGFEQGADDYLIKPFEMKELEARLKAHIRRNRG 139 Query: 121 --LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 +TL++ L D S +SR SI ++ +L +L + +++ R I EIWG Sbjct: 140 ELEGNTLQVEDLIFDPASMRISRAGNSIKVSPIAIHVLKILMRESPKLVTREKIEHEIWG 199 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 + D++ + + LR +D P+ KLI TI G+GY ++ Sbjct: 200 ED-TPDSDALRSHLYNLRKNIDKPYERKLIHTISGLGYKLCGEEQ 243 >UniRef50_B1HZW1 Transcriptional regulatory protein cutR (Defective melC1 suppressor protein) n=6 Tax=Firmicutes RepID=B1HZW1_LYSSC Length = 230 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 80/219 (36%), Positives = 126/219 (57%), Gaps = 3/219 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+LL+ED +++GL ++GY +D DG++ L L ++Y LIILD+ LP MDG Sbjct: 1 MKLLLVEDEAVLSRIISKGLKKSGYAVDTAFDGKEALELFEINEYDLIILDLNLPKMDGI 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++L+ +R + ++ L+AR ++ D++ GLD GANDYL+KPF F EL AR+R LR+ Sbjct: 61 EVLEQIRVQNEDVKILILSARSAIHDKIMGLDCGANDYLIKPFDFQELDARIRNLLRRSF 120 Query: 120 ALNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + S + + +DS V D I +T+KE+ +L L ++I + +W Sbjct: 121 SQKSAIISFENITLDSSKKIVLVDGEMIHVTKKEYAILEYLMLHQNKVISSEELIEHVWD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGY 216 D +N++ I LR K+ D E ++I TIRG GY Sbjct: 181 SETDLFSNSLKFHIHSLRKKIADVLGEIEVIQTIRGQGY 219 >UniRef50_Q8ZSA5 Two-component response regulator n=27 Tax=Cyanobacteria RepID=Q8ZSA5_ANASP Length = 245 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 93/237 (39%), Positives = 137/237 (57%), Gaps = 21/237 (8%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDD---YALIILDIMLPGM 57 MK+LL+ED + + LS+ YV+D V DG + ++ L+DD Y L I D +LPGM Sbjct: 1 MKVLLVEDEPDLGASIQRKLSKEKYVVDWVLDGNEA-WIYLEDDLTQYTLAIFDWLLPGM 59 Query: 58 DGWQILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR 116 G ++ + LR PV+ LTA+DS+ D+V GLD+GA+DYL+KPF +ELLAR+RA L+ Sbjct: 60 SGIELCKRLRNRGNALPVLMLTAKDSMADKVAGLDAGADDYLIKPFGMAELLARLRA-LQ 118 Query: 117 QHHALNST----------LEISGLRMDSVSHSVSR-----DNISITLTRKEFQLLWLLAS 161 + AL L++ GL +D + ++SR +N I LT+KEFQLL L Sbjct: 119 RRSALGGASLTSQFQPLQLQVGGLILDCGNCTISRQYPNGENKVIYLTKKEFQLLEYLMK 178 Query: 162 RAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 R +I R I + ++ + + +N V IR LR K+ + + LI T+ MGY F Sbjct: 179 RPNTVITRDQILNHLYAFSAERVSNVVAAQIRLLRRKLSEYGCDGLIETVPSMGYRF 235 >UniRef50_C9XJX9 Two-component system response regulator n=108 Tax=Firmicutes RepID=C9XJX9_CLODC Length = 222 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 77/218 (35%), Positives = 127/218 (58%), Gaps = 6/218 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+IED+ QE +++ LS GY +D +DG +G+ + Y L+ILDIM+P +DG+ + Sbjct: 5 ILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIMMPNLDGYGV 64 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-HHAL 121 + +R + P+I LTA + D+++G D +DY+ KPFSF+ L+ RV A LR+ + + Sbjct: 65 CKMIRKSSSVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRRSNKTI 124 Query: 122 NSTLEI-SGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 N + L++D ++ D I LT KEF +L L + ++I R + IWG + Sbjct: 125 NDKFIVFEKLKLDLNTYIAEIDGEPIELTLKEFNILKALIEKYPQVITREGLLDSIWGYD 184 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 + DT VD I+ +R K+ P+ I T++G+GY+ Sbjct: 185 YYGDTRIVDAHIKNIRKKISLPY----IKTVKGIGYTL 218 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 127/223 (56%), Gaps = 7/223 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L++ED + + + L + G+ V DG L + +++LD+MLPGM G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ----- 117 + LR PVI +TARDS D+V GL+ GA+DY+ KP+S EL+AR+RA LR+ Sbjct: 64 CKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADND 123 Query: 118 -HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 A + LE +RMD H VS + ITL KEF LL L +G ++ R + + Sbjct: 124 DAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 183 Query: 177 WGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSF 218 WG ++ DT T+DV ++RLR+K+ +DP + T+RG+GY Sbjct: 184 WGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKL 226 >UniRef50_Q97LA9 Response regulator (CheY-like receiver domain and HTH DNA binding domain) n=1 Tax=Clostridium acetobutylicum RepID=Q97LA9_CLOAB Length = 221 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 86/221 (38%), Positives = 122/221 (55%), Gaps = 2/221 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M +L++ED++ + +GL + D DG DGLY + Y +ILDI LP MDG Sbjct: 1 MHLLIVEDDEELSILLKKGLKQYNCTCDISHDGEDGLYNLEINSYDAVILDINLPKMDGI 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + + +R TPV+ LTAR DDRV GLDSGA+DYL KPF F EL AR+ A +R+++ Sbjct: 61 TVCRKMRGKGISTPVLMLTARTDTDDRVLGLDSGADDYLGKPFEFKELRARLHALIRRNY 120 Query: 120 ALNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 S ++I L +D+ + SV ITLT +E+ +L LL I+ I +WG Sbjct: 121 NKPSNEIKIKDLNIDTKAKSVKVGEKLITLTAREYDILELLCYNYPNIVSAEEIIEHVWG 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 N + +N + V I LR K+ E LI T++G GY Sbjct: 181 DNDNQFSNVIRVHIANLRRKIKCSGGETLIETLKGKGYRLC 221 >UniRef50_Q2S8G9 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=3 Tax=Proteobacteria RepID=Q2S8G9_HAHCH Length = 228 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 128/220 (58%), Gaps = 2/220 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED + + L + GY +D DG YL ++ Y L ++D+ LP G Sbjct: 1 MRILLVEDEALLRGQLRDELVKHGYAVDTAEDGEVAAYLGKENPYDLAVVDLGLPKRTGL 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +++Q R K+ P++ LTAR D+V GL++GA+DYLVKPF +EL+AR+ A LR+ Sbjct: 61 EVIQEWRGMGKEFPILILTARGHWQDKVSGLEAGADDYLVKPFHVAELMARLGALLRRSS 120 Query: 120 ALNSTLEISG-LRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 +S + +G + +D+ + V D ++ LT E+ L L RAG+ + +T + ++ Sbjct: 121 GFSSPVIQAGPMTLDTRAKLVQIDGSALELTAYEYNTLEYLVHRAGQAVSKTELTEHLYA 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +FD D+N ++V I RLR K+D K I T+RG GY F Sbjct: 181 QDFDRDSNVIEVFIGRLRKKLDPDGVNKPITTLRGQGYRF 220 >UniRef50_Q2S740 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S740_HAHCH Length = 242 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 130/231 (56%), Gaps = 13/231 (5%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++LL++D++ + Q L + GY + + DG + ++ LIILD+MLPGMDG Sbjct: 4 RLLLVDDDKGLTRLIKQFLEQNGYPVKVIHDGESAVSWLERNQPQLIILDVMLPGMDGLS 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + + +R + P+I LT+ D D V GL+ GA+DYL KP LLA +RAQLR+ Sbjct: 64 VCREVRKHYKGPIIMLTSLDDDIDEVAGLEVGADDYLAKPVKSRVLLAHIRAQLRRVETY 123 Query: 122 ------------NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPR 169 N + I L ++S + +V + ++I T EF LL+ LA +AG +I R Sbjct: 124 SANDSDAPATQENGVIRIGELVINSNARTVVKAGVAIDFTTAEFNLLYYLARQAGSVISR 183 Query: 170 TVIASEIWGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 219 ++ EI+ + +D ++D+ + R+R ++ DDP +LI TIRG GY FV Sbjct: 184 DLVYREIFNLEYDGLDRSIDLRVSRIRKRLGDDPKQPRLIKTIRGEGYLFV 234 >UniRef50_C0VPI8 Two-component response regulator n=4 Tax=Acinetobacter RepID=C0VPI8_9GAMM Length = 219 Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 82/218 (37%), Positives = 126/218 (57%), Gaps = 6/218 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL ED+ E + L GY +D V G + + Y ++LD LP G Sbjct: 1 MRILLAEDDASQAESIKDWLEMDGYSVDWVERGDHAILAVEQHQYDCVLLDRGLPKASGD 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 QIL+++R +TPVI +TA+D + DRV GLD GANDYLVKPF+ EL ARVR+QLRQH Sbjct: 61 QILKSIRQRNLKTPVIFITAKDHIHDRVEGLDLGANDYLVKPFNLEELSARVRSQLRQHQ 120 Query: 120 A-LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L+ + L++D + ++S+ ++ LT KEFQ+L+ L + I R + ++ Sbjct: 121 VDAGQYLKFADLKLDPQAKTLSQAEQTVNLTAKEFQILYKLMQKPDHIFTREQLEESLYA 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 + ++N ++V I ++R K+ + I T+RG+GY Sbjct: 181 WGDEIESNAIEVFIYQIRKKIGGQY----IKTVRGLGY 214 >UniRef50_C5EI97 Response regulator receiver protein n=8 Tax=Bacteria RepID=C5EI97_9FIRM Length = 234 Score = 147 bits (370), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 127/219 (57%), Gaps = 3/219 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED++ + L +AGY D G++ Y A + Y +IILD MLP MDG Sbjct: 7 MRILLVEDDRELSGTIKLQLEQAGYETDCCGQGQEAFYYASEYPYDVIILDRMLPQMDGL 66 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +LQ LR TPVI TA D V+DR+ GLD+GA+DYLVKP++ ELLAR+RA R+ Sbjct: 67 SVLQGLRRMDITTPVIITTALDGVNDRIDGLDAGADDYLVKPYAAGELLARIRAVTRRPG 126 Query: 120 ALNS--TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 L S + MD+ ++ + +++L+R+E L+ L AG+++PR +I S IW Sbjct: 127 RLEQGRAKTFSNITMDTDRRELAGPSGTVSLSRREAALMEYLMRNAGQVLPRGLILSYIW 186 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 G + + + +D I LR ++ I T+ G+GY Sbjct: 187 GPDSEVEDGNLDNYIYFLRRRLKAVGTAAQIKTVHGIGY 225 >UniRef50_A7GLY2 Two component transcriptional regulator, winged helix family n=9 Tax=Firmicutes RepID=A7GLY2_BACCN Length = 220 Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 72/217 (33%), Positives = 124/217 (57%), Gaps = 6/217 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+IED++ QE + Q L Y++ SDG +G+ K + LI+LD+M+P ++G+++ Sbjct: 5 ILVIEDDEEIQELIKQFLITQQYIVTVASDGLEGMKQFNKHPFDLILLDVMMPNLNGFEV 64 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA-- 120 +R P+I LTA + D+++G D G +DY+ KPFSF + RV A LR+ + Sbjct: 65 ANIIRNQSNIPIILLTALEEEQDQMKGFDLGIDDYITKPFSFHVFIRRVEAVLRRSYGER 124 Query: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 ++ L + +D ++ V + + I+LT KEF++L LL ++I R I +WG Sbjct: 125 TDNHLSFKEIHVDCDTYKVYVNKVEISLTAKEFEILQLLLKNKRKVITRENIVERVWGYE 184 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 +T +D I+ +R K++ P+ I T++G+GY Sbjct: 185 PYGETRIIDTHIKNIRKKLNTPY----IKTVKGIGYK 217 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 85/233 (36%), Positives = 134/233 (57%), Gaps = 11/233 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+IED ++ L+ GY + G+ G AL+ D+ LI+LD+MLPGM+G++ Sbjct: 4 RLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMNGFE 63 Query: 62 ILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 I+ LR+ +TPVI LTA+++ ++ V+GL SGA+DY+ KPF +ELLARV A LR+ Sbjct: 64 IMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRSTG 123 Query: 121 L----------NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRT 170 NS + + L + + V+ + ITL KEF++L LA + G ++ R Sbjct: 124 KEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMTRD 183 Query: 171 VIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 + + +WG ++ TVDV + LR K++ I +IRG+GY V KK Sbjct: 184 DLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDPQSVHIDSIRGVGYKLVVNKK 236 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 128/220 (58%), Gaps = 3/220 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL+ +D+ +T + + L+ G+ + SDG++ L LAL L+ILD+M+P +DG+ Sbjct: 6 RILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGFA 65 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + +R A P++ LTAR D+V G GA+DY+ KPF +EL+ RV A LR+ L Sbjct: 66 VCGRIRAASAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRMPTL 125 Query: 122 --NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 + TL L ++ + +V + + LT +EF LLWL+AS G R + + +W Sbjct: 126 PESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESLLARVWHG 185 Query: 180 NFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSF 218 + +D +TV V IRRLR K++D P + I T+ G+GY F Sbjct: 186 DAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKF 225 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 83/222 (37%), Positives = 128/222 (57%), Gaps = 6/222 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L++ED + + + L + G+ V+DG L + +++LD+MLPGM G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ----- 117 + LR PVI +TARDS D+V GL+ GA+DY+ KP+S EL+AR+RA LR+ Sbjct: 64 CKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDD 123 Query: 118 HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + LE +RMD H VS + +ITL KEF LL L +G ++ R + +W Sbjct: 124 SEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVW 183 Query: 178 GINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 G ++ DT T+DV ++RLR+K++ DP + T+RG+GY Sbjct: 184 GADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL 225 >UniRef50_Q04HD6 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=12 Tax=Lactobacillales RepID=Q04HD6_OENOB Length = 231 Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 86/219 (39%), Positives = 132/219 (60%), Gaps = 4/219 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 +KILLIED++ + +T LSE V V +G DG Y A++ Y LI+ D+MLP M+G Sbjct: 6 VKILLIEDDKILNDDITAMLSEIAEV-KQVFNGADGEYEAVEAPYDLIVSDLMLPEMNGL 64 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 I++ +R A +TPV+ LTA+DSVDD+V+G + GA+DYL KPF ELLARV A LR+ Sbjct: 65 DIIKEMRDAHIETPVLILTAKDSVDDKVKGFEVGADDYLTKPFHREELLARVEALLRRAG 124 Query: 119 -HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + I L++ + +V+ N ++ L KE+ +L LA II + I +W Sbjct: 125 IDTEEKEINIGNLKIHLSNRTVTVGNQNVQLVGKEYDILVYLAKNKNIIITKDQIFDRVW 184 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 G++ D+ T+ V++ + LR K++ LI T+R +G+ Sbjct: 185 GLDSDTTTSVVNIYLNNLRRKLESVGKNDLIKTLRNVGF 223 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 125/221 (56%), Gaps = 4/221 (1%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL++ED++ + + + L GY + DGR L L + LIILD+MLP M G ++ Sbjct: 5 ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMSGLEV 64 Query: 63 LQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 Q LR+ TP+I LTAR D+V GL GA+DYL KPF+ ELLAR+ A LR+ H Sbjct: 65 CQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTHQS 124 Query: 122 NSTLEIS--GLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 + +S L +D SV ++ + L+ +EFQ+L L AG+ + R I E+WG Sbjct: 125 KPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIYQEVWGY 184 Query: 180 NFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFV 219 + T+D I RLR+K++D P + I T+ G GY FV Sbjct: 185 DTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFV 225 >UniRef50_C8KZR7 Two component transcriptional regulator n=5 Tax=Proteobacteria RepID=C8KZR7_9PAST Length = 225 Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 83/220 (37%), Positives = 134/220 (60%), Gaps = 8/220 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED++ + V+ L + Y +D V++G+ + Y L++LD+ LPG DG Sbjct: 1 MRILLVEDDRMIADAVSANLKDNHYAVDWVNNGKTAEEALMIQSYDLVLLDLGLPGQDGL 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 Q+L +R K TPV+ +TARD +D R+ GLD GA+DY++KPF +EL AR+RA LR+H Sbjct: 61 QVLSHIRQKKNSTPVLIVTARDDLDSRLSGLDGGADDYIIKPFDMAELQARMRAVLRRHG 120 Query: 120 ALNSTLEISG-LRMDSVSH--SVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 +S +G + +D S+ ++ N +ITL+ KEF +L L SRAG I+ R + +I Sbjct: 121 GQSSPKLTNGVITLDPTSYVVEIAGQNSTITLSNKEFSVLHALISRAGMILSRADLEDKI 180 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 + + ++N +D I LR K+ ++ I +RG+G+ Sbjct: 181 YAWGEEVESNAIDFLIHGLRKKIG----KEQIKNVRGVGW 216 >UniRef50_B9K181 Two component response regulator n=3 Tax=Rhizobium/Agrobacterium group RepID=B9K181_AGRVS Length = 218 Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 83/218 (38%), Positives = 128/218 (58%), Gaps = 6/218 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL++ED+ + + + Y +D + DG GL +DYA++ILD+ LP G+ Sbjct: 1 MRILVVEDDVILGSSLKKAFEKHAYGVDLMRDGESGLLAIQDNDYAVVILDVNLPKASGF 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++++TLR + + PV+ LTA DS+ RV GLD GA+DYLVKPF ELLARVRA R++ Sbjct: 61 EVVRTLRASGNKVPVLLLTALDSIRSRVEGLDEGADDYLVKPFDLDELLARVRALARRYE 120 Query: 120 ALNSTLEISG-LRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 TL G + +D + ++ + + KEF LL LL RAG + ++ I ++ Sbjct: 121 GRTETLIRCGNVELDPSAMIARQNGTPLHVAGKEFHLLKLLMERAGRYVTKSDIEYALYD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 I+ ++NT++V I LR K+ F I +IRG+GY Sbjct: 181 ISAMVESNTIEVTIYSLRKKLGADF----IKSIRGVGY 214 >UniRef50_B7GFY6 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=16 Tax=Firmicutes RepID=B7GFY6_ANOFW Length = 226 Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 87/222 (39%), Positives = 126/222 (56%), Gaps = 5/222 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYV-IDAVSDGRDGLYLALKDDYALIILDIMLPGMDG 59 M++LL ED+ E + L + G +D V +G D AL Y +IILD MLP DG Sbjct: 4 MRVLLAEDDIYLGELIVHLLKKKGVEHVDWVQEGEDAYDYALASFYDVIILDWMLPNGDG 63 Query: 60 WQILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 I Q LR ++ LTA+D+V DRV GL++GA+DYLVKPF EL+AR++A R+ Sbjct: 64 VSICQRLRKRGYHGAILMLTAKDAVQDRVEGLEAGADDYLVKPFEIDELMARLKALSRRT 123 Query: 119 HA--LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 A + ++ SH++ +D I LT +EFQLL LL G ++ R +I I Sbjct: 124 FAPIQEEIVRWGAFEVNRTSHTLLKDGEQIILTPREFQLLDLLLQNRGRVLTRDIILDRI 183 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 WG + D T+D ++ LR K+ D ++LI T+RG+GY+ Sbjct: 184 WGYDADVSMKTIDATVKLLRKKIGDE-QQQLIKTVRGVGYTI 224 >UniRef50_B0TXI9 Response regulator receiver protein n=14 Tax=Francisella RepID=B0TXI9_FRAP2 Length = 229 Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 76/220 (34%), Positives = 130/220 (59%), Gaps = 5/220 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+L+ +D+++ +++ E G DG++ L+L ++Y ++++D M+P +DG Sbjct: 6 KVLVADDDKKIAQFIKTKFEENGIETTLAHDGKEALFLINTNNYDVVVIDWMMPYLDGIS 65 Query: 62 ILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH-- 118 +L+ LR T PVI L+A DS +++++GL SG++DYL KPFS EL+ RV ++ Sbjct: 66 LLKILRKQNVTIPVIILSALDSTENKIQGLTSGSDDYLTKPFSIDELIVRVNILYKRTKQ 125 Query: 119 --HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 A + L + +D ++H V R++ I L ++E+++L LL E++ +T+I E+ Sbjct: 126 IAEAQSHKLICGDIILDELAHEVRRNDELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 W +FD TN V+V I RLR K+ + I TIRG GY Sbjct: 186 WDYDFDPQTNVVEVHISRLRNKLTENGLPDPIKTIRGFGY 225 >UniRef50_Q1N0E1 DNA-binding response regulator n=1 Tax=Bermanella marisrubri RepID=Q1N0E1_9GAMM Length = 247 Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 127/230 (55%), Gaps = 13/230 (5%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL+IED++ + + LS+ GY I+A DG GL A+K+D+ +I+LD+MLP +DG + Sbjct: 15 RILIIEDDRSVNDLLCGNLSKKGYQIEAAFDGDRGLKKAIKEDFDIILLDVMLPKIDGLK 74 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ---H 118 +L LR+ KQTPV+ LTA+ +DR+ G SGA+DYL+KPFS +EL R++A LR+ Sbjct: 75 LLTLLRSEKQTPVLMLTAKGGEEDRIYGFKSGADDYLIKPFSMTELDLRIKAILRRTQIQ 134 Query: 119 HALNSTLEISGLRMDSVSHS---------VSRDNISITLTRKEFQLLWLLASRAGEIIPR 169 +S E + S+ V +N I T EF+L + L E++ + Sbjct: 135 REFSSKEESKNFELKSIDKKIYFNKKKGVVHINNKEIAFTPIEFELFYALEKEKDEVVSK 194 Query: 170 TVIASEIWGINFDSDTNTVDVAIRRLRAKVDDP-FPEKLIATIRGMGYSF 218 + + F T+D+ I ++R K+ + I TIRG GY F Sbjct: 195 AFLYQTVLLREFSRYDRTLDMHISKIRKKLTAAGMSKNTIKTIRGQGYYF 244 >UniRef50_A7X5Y5 Heme response regulator hssR n=71 Tax=Bacillales RepID=HSSR_STAA1 Length = 224 Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 82/220 (37%), Positives = 126/220 (57%), Gaps = 5/220 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSD--GRDGLYLALKDDYALIILDIMLPGMD 58 ++ L+++D+ R ++ L IDA + G L L K + ++DIM+ GMD Sbjct: 2 VQCLVVDDDPRILNYIASHLQTEH--IDAYTQPSGEAALKLLEKQRVDIAVVDIMMDGMD 59 Query: 59 GWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 G+Q+ TL+ PVI LTARD++ D+ R SG +DY+ KPF EL+ R+RA LR++ Sbjct: 60 GFQLCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRY 119 Query: 119 H-ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + NS + I L ++ + N ++TL KEFQLL++LA+R +I R I +IW Sbjct: 120 NINSNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIW 179 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 G +++ D TVDV I+RLR ++ I T+RG GY Sbjct: 180 GYDYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYK 219 >UniRef50_Q2W278 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=11 Tax=Bacteria RepID=Q2W278_MAGSA Length = 225 Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 81/218 (37%), Positives = 125/218 (57%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+EDN R E+++ GL AG+V D D Y ILD+ LP DG Sbjct: 1 MRILLVEDNDRLAEFISAGLKSAGFVPDVFGTVADATAAFESAAYQAAILDLGLPDGDGL 60 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-H 118 I++ R A P++ LTARD V DRV GL++GA+DYL+KPF+ EL+AR+RA LR+ Sbjct: 61 DIVRAQRAKAAPCPIMVLTARDRVSDRVSGLNAGADDYLLKPFAMEELIARLRAILRRPG 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 AL+ L + L D+ V D + + R+E ++L L R+G+++ + + ++G Sbjct: 121 AALSVELSLGNLTFDTAGREVRVDGQLVAMPRREMEMLEHLLRRSGKVVSKRSLEEGLYG 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 + D N+V+V + RLR ++ + T+RG+GY Sbjct: 181 FDDDVTPNSVEVLVSRLRKRLQQTGAGVTVHTLRGIGY 218 >UniRef50_C8PY86 DNA-binding response regulator n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PY86_9GAMM Length = 222 Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 81/222 (36%), Positives = 132/222 (59%), Gaps = 6/222 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++LL+ED+ + + L E Y +D DGR+ + + Y +I+LD+ LP +DG Sbjct: 1 MRVLLVEDDVFIADSLIDSLEEEAYAVDWAKDGREAILTLKVEAYDVILLDLGLPEIDGM 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +L+TLR+AK TPV+ LTARD + DRV+GLD+GA+DY+ KPF+ SELLAR+R +R+ Sbjct: 61 SVLETLRSAKIDTPVLVLTARDQIKDRVKGLDAGADDYMTKPFAMSELLARMRVLVRRSQ 120 Query: 120 A-LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 ++TL++ L +D + RD I I +T KE+ LL + ++ ++ + + I+ Sbjct: 121 GNSHNTLQVGDLTLDINVKRLKRDGIEIDITAKEYMLLTTFMNAPDKVFSKSELENSIYN 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 ++N ++ I LR K+ +K I IRG+G+ A Sbjct: 181 WEAGIESNAIEFLIYGLRKKI----GQKRIKNIRGLGWYISA 218 >UniRef50_A6TKQ5 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ5_ALKMQ Length = 236 Score = 145 bits (367), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 79/226 (34%), Positives = 127/226 (56%), Gaps = 9/226 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KILL+ED++ + + L + G+V+ DG LK+ Y L++LD+MLPG+DG+Q Sbjct: 5 KILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGLDGYQ 64 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ---- 117 + Q +R TP+I LTA+ ++++V+GL GA+DY+ KPF ELLAR+ A LR+ Sbjct: 65 VCQKIRETSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRRIEQD 124 Query: 118 HHALN----STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 H +N + LE L D + + + I + R+E QLL L ++ R + Sbjct: 125 HEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVFKREELI 184 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKL-IATIRGMGYSF 218 IWG +F+ + +D+ I+RLR ++ + I T+ G+GY F Sbjct: 185 EGIWGWDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKF 230 >UniRef50_C1F588 TcrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F588_ACIC5 Length = 224 Score = 145 bits (367), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 90/223 (40%), Positives = 123/223 (55%), Gaps = 3/223 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M +LLIED++R + V +GL E G+ + DG DG L ++ +LDI+LPGM G Sbjct: 1 MNVLLIEDDRRIAQLVERGLREDGHRVSVTHDGADGARRMLSGEFDAALLDILLPGMSGL 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-H 118 ++L+ +R +TP++ LTA D+V + D GA+DYLVKPF LLARV A R+ Sbjct: 61 EVLERVRAQHCKTPILMLTAVDAVPKVLEAFDLGADDYLVKPFLLEILLARVGAIARRVQ 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L GL +D V+RD I LTRK+ LL +L R+G + R + WG Sbjct: 121 PQAPQMLHAGGLTLDRQRRVVARDGRQIALTRKQVDLLEVLMRRSGLVTSREELIEAGWG 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGYSFVA 220 NT+DV I LR K+ D + LI TI G GY+FVA Sbjct: 181 SASAVKENTLDVYIHSLRTKLGDRSENRPLIRTIHGTGYTFVA 223 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 145 bits (367), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 129/228 (56%), Gaps = 10/228 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL+++D + V G+ + G D L + Y L+ILDI LPG+DG+ Sbjct: 3 RILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFG 62 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ--- 117 +L+ +R + PVI LTAR DRV GL+ GA+DY+VKPFS EL+ARVRA LR+ Sbjct: 63 VLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTAE 122 Query: 118 -----HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 ++ SGL++D+ + ++ +TL KEF LL LAS G++ R V+ Sbjct: 123 ASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREVL 182 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSFV 219 ++WG + D TVDV IRRLR+K+ + E LI T G+GY F+ Sbjct: 183 LGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFI 230 >UniRef50_B9E984 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E984_MACCJ Length = 223 Score = 145 bits (367), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 73/215 (33%), Positives = 126/215 (58%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+++D + V +G + + S+G + + L + L I+DIM+PG+DG+Q+ Sbjct: 5 ILVVDDEAAIRCEVKEGFLRHSFQVYVASNGDEAINLLDNESIDLCIVDIMMPGIDGFQL 64 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 + ++ Q PVI LTARD++ D+ +G++DY+ KPF E++ R +A L+++ Sbjct: 65 CEQIKQDYQLPVIMLTARDALGDKRIAFQAGSDDYVTKPFEIEEVIFRAQAILKRYEKAV 124 Query: 123 STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFD 182 +E L +D+ S+ V+ ++ S+ L RKEF+LL+ L ++ R + EIWG +FD Sbjct: 125 EKVEFGKLIIDADSYEVTMEDESLYLPRKEFELLYYLVRHYPKVATREQLIEEIWGYDFD 184 Query: 183 SDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 D TVDV ++R+R ++D I T+RG+GY Sbjct: 185 GDERTVDVHVKRIRKRLDAFDSGVEIQTVRGVGYK 219 >UniRef50_A8RGX6 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RGX6_9CLOT Length = 231 Score = 145 bits (367), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 131/221 (59%), Gaps = 4/221 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL+IED +R + + AGY D DG +GL LA Y I+LD+MLPGMDG+ Sbjct: 8 MRILVIEDEKRLAFTLADMIGGAGYYTDVSHDGAEGLELAQTGIYDAIVLDVMLPGMDGY 67 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +L+ LR+ + TPV+ LTAR + DRVRGLD+GA+ YL KPF+ E LA +R LR+H Sbjct: 68 AVLKNLRSTRNMTPVLMLTARSELSDRVRGLDAGADYYLTKPFATEEFLACLRTVLRRHG 127 Query: 120 ALNS-TLEISGLRMD-SVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + TL L + S+ + +N S++L+ KE +L+ LL + + +P+ + ++W Sbjct: 128 DIAPDTLTFGDLILTPSMPELICGEN-SVSLSAKELELMSLLIQNSSQYLPKETLLLKVW 186 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 G + + ++N+V+ I LR K+ I+ +R +GY Sbjct: 187 GYDANVNSNSVEAYISFLRKKLSLLGSCVSISVMRNIGYKL 227 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 145 bits (367), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 131/223 (58%), Gaps = 6/223 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +ILL ED+ +T L GY +++ DG L A+ Y LI+LD+MLP G+ Sbjct: 4 RILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSGFD 63 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ--- 117 + + LR ++ P++ LTAR V D+V GL SGA+DYL KPF ELLAR+ A LR+ Sbjct: 64 VCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRAPV 123 Query: 118 HHALNS-TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 +LN+ T ++ G+ +D V+R +TL+ +E++LL L GE + R + +++ Sbjct: 124 RRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLTQV 183 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSF 218 WG + +DT TVDV + LR K+++ P + + T+RG+GY Sbjct: 184 WGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKL 226 >UniRef50_Q2G7V2 Two component transcriptional regulator, winged helix family n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G7V2_NOVAD Length = 227 Score = 145 bits (367), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 126/228 (55%), Gaps = 9/228 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL+IED + +GL++ G + +DG GL LA + I+LD+ LP MDG+ Sbjct: 1 MRILIIEDEIELAGALHRGLTQEGCKVTLATDGSTGLELAASLAFDFILLDVNLPDMDGF 60 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++ LR T P+I +TARD + DR+RGL GA+DYL KPF+F ELLAR+ A R+ Sbjct: 61 EVCARLREQGSTMPIIMVTARDEIADRIRGLKGGADDYLTKPFAFEELLARMDAIKRRMA 120 Query: 120 A-------LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 + + + L D + +++R + LT KE +L LL G +I RT I Sbjct: 121 PSQGGKVQPDGRITVGDLHFDPRTMTLTRAGTPVQLTVKEMGVLRLLMESPGTVISRTEI 180 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 +WG+ D TN V+V + RLR K+ P ++ +RG GY +A Sbjct: 181 LRAVWGMEDDPLTNIVEVYLSRLRRKLHALGP-PVVENVRGFGYRLIA 227 >UniRef50_B6FX18 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FX18_9CLOT Length = 224 Score = 145 bits (366), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 126/219 (57%), Gaps = 4/219 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL +EDN+ + + + LS+ + ++ DG + LY+ +D Y L++LD+MLPGM+G Sbjct: 1 MKILAVEDNKTLLDSIIEELSKH-FDVEGCEDGEEALYMIEQDIYDLVVLDLMLPGMNGM 59 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +IL+ R TPV+ LTA++++DD+V +GANDYL KPF EL+ARV A LR + Sbjct: 60 EILKNARNKGIDTPVLILTAKEALDDKVEAFQTGANDYLTKPFYMEELVARVYAILRTNG 119 Query: 120 AL--NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 L + L+ + +D+ V + ITL K++ LL G I+ + I IW Sbjct: 120 KLTEKTGLQFKDMYIDTSEKRVFIGDEEITLQNKQYNLLEYFVMNRGAILLKEQIYDRIW 179 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 GI+ D+ V+V + LR K+ +K I T R +GY Sbjct: 180 GIDSDATIEIVEVYVSNLRKKLSKFGYDKYIKTKRKVGY 218 >UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmicutes RepID=C9YME3_CLODR Length = 247 Score = 145 bits (366), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 126/224 (56%), Gaps = 7/224 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+I+D++ + + + D + G++GL + +Y L++LD+M+PGMDG++ Sbjct: 20 KILIIDDDKELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDGFE 79 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 L+ +R P++ T+++ +VRGL +GA+DYL KPF EL+AR+ + +R++ Sbjct: 80 TLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTRF 139 Query: 122 N------STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 N L GL++D + S + N + L KEF LL A G+I+ + I E Sbjct: 140 NQQAGAIQKLNFDGLQIDLENRSATTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYEE 199 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 +WG + D + + I RLR K++ +P K I T++G+GY F Sbjct: 200 VWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRF 243 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 145 bits (366), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 80/223 (35%), Positives = 131/223 (58%), Gaps = 5/223 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 +K+L++ED + ++T L AGY + G D L L + L++LD+MLPG+DG Sbjct: 6 VKVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGL 65 Query: 61 QILQTLRTAKQTP-VICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR--- 116 ++ Q +R P +I LTA+ D++ GL+ GA+DY+VKPF+ EL+AR++A LR Sbjct: 66 EVCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRD 125 Query: 117 QHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 ++ A + L +D+ ++ + ++N + LT E+ LL + G+ + R + + I Sbjct: 126 RYEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLNGI 185 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSF 218 WG ++ DT T+DV IRRLR K++D P + I TI G GY + Sbjct: 186 WGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRW 228 >UniRef50_C3X1J5 Response regulator receiver:Transcriptional regulatory protein n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X1J5_OXAFO Length = 223 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/219 (37%), Positives = 130/219 (59%), Gaps = 3/219 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+IEDNQ + + L G+ D DG L L + LIILDIMLPGMDG Sbjct: 3 KILIIEDNQDIRYNLVDFLEAKGHKTDNTDDGLKALALLTLQSFDLIILDIMLPGMDGLD 62 Query: 62 ILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-HH 119 + + LR +TPV+ L+ARD+V DR++GL +GA+DYLVKPFS +EL R+ A LR+ Sbjct: 63 LCRELRARGNETPVLFLSARDTVQDRIQGLSTGADDYLVKPFSLAELELRISAILRRVKR 122 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 L+++ + M+ +V+R ++ + L F++L LL ++ ++ R + +E+WG Sbjct: 123 PAFHLLQVADIVMNLDELTVTRADVPVRLNPMMFKILKLLMLKSPSVVSREEMENELWGD 182 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 + D++++ I LRA +D PF L+ T+ G G++ Sbjct: 183 D-RPDSDSLRTHIHNLRAVIDGPFGTSLLKTVSGFGWTL 220 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 82/223 (36%), Positives = 129/223 (57%), Gaps = 7/223 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+++D+ E V + L AG+ +D +DG L +A L++LD+MLPG+DG + Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + + LR + PVI LTAR DR+ GL+ GA+DY+ KPFS EL RV++ LR+ + Sbjct: 117 VFRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANET 176 Query: 122 NSTLEISGLR-----MDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 E LR +D+ + + +R + + LT +EF LL L R G R + + Sbjct: 177 VPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEHV 236 Query: 177 WGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSF 218 WG ++ D +TV V IRRLR K+ DDP +++ T+ G+GY + Sbjct: 237 WGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRY 278 >UniRef50_C2ANN4 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2ANN4_TSUPA Length = 237 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 82/218 (37%), Positives = 129/218 (59%), Gaps = 4/218 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+ +D+QR +++GL+ GY ++ V DG L A ++ +I+LD+ +PG +G+Q Sbjct: 17 RVLIADDDQRLVRGLSEGLACEGYAVETVGDGEAALIAADAGEFDVIVLDVQMPGRNGYQ 76 Query: 62 ILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 +++ LR + TPV+ LTA+D D GLD+GA+DYL KPFS+ +L L +H A Sbjct: 77 VVRELRRRENWTPVLMLTAKDGEYDVADGLDAGADDYLTKPFSYV-VLLARLRTLLRHGA 135 Query: 121 LNS--TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L + GL +D + SV+RD I+LT +EF ++ LA AG + ++ +A +W Sbjct: 136 ARRPVVLRVGGLEIDVAARSVTRDGTPISLTAREFDVIATLAREAGRPVAKSDLARAVWD 195 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 D N ++V I LR KVD PF + I T+RG GY Sbjct: 196 EAEDVAGNRIEVYISALRRKVDAPFGTESIETLRGYGY 233 >UniRef50_C6W0A8 Two component transcriptional regulator, winged helix family n=4 Tax=Flexibacteraceae RepID=C6W0A8_DYAFD Length = 231 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 87/220 (39%), Positives = 123/220 (55%), Gaps = 6/220 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L+IED+ R + + + L + D DG G +AL Y L++LDI LPGM+G+ + Sbjct: 7 VLIIEDDLRIAQNIYRVLQSENFNADIARDGLTGKKMALDGRYDLVLLDINLPGMNGFDV 66 Query: 63 LQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR----- 116 + + K PVI LTA ++D+V GL +GA DY+VKPF EL+AR+ A LR Sbjct: 67 CRHIGEFKPLLPVIMLTAYGEIEDKVEGLGNGATDYIVKPFDSRELVARIHAALRLSDAG 126 Query: 117 QHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + A N L I+ L+++ + V+R I LT KEF LL G +I + + I Sbjct: 127 RLDAGNRVLGIADLQLNVDTKVVTRAGKFIGLTAKEFALLEYFLLNPGTVISKMDLVKNI 186 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 W +NFD TN V+V I LR K+D F KLI T G+GY Sbjct: 187 WHLNFDPGTNFVEVYINYLRKKIDKGFDVKLIQTRPGLGY 226 >UniRef50_Q1IHT8 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IHT8_ACIBL Length = 247 Score = 144 bits (364), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 131/227 (57%), Gaps = 6/227 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 + +LLI+D+ E +++ L + G+ +D + +G DGL A + Y L+ILD+MLPGM+G+ Sbjct: 20 LSLLLIDDDAELCEMMSEFLVQHGHSVDCIRNGPDGLKSAAETKYDLVILDVMLPGMNGF 79 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 +L LR PVI LTAR + DR++GL++GA+DYL KPF ELLARVRA LR+ Sbjct: 80 TLLSQLRRRTPVPVIMLTARTAPHDRIQGLEAGADDYLPKPFDPDELLARVRAVLRRASQ 139 Query: 121 LNS----TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + +R+++ + V I LT EF +L+LL AG ++ R I+ I Sbjct: 140 APADALFDFTFDDVRINARTRQVWLKADLIDLTAVEFDILYLLVCSAGRVLTREEISLAI 199 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 S ++DV I +R+K++ P I T+RG+GY F ++ Sbjct: 200 LERRLMSHDRSLDVHISHIRSKLETLAP--FIQTVRGVGYVFTGSRR 244 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 79/218 (36%), Positives = 129/218 (59%), Gaps = 2/218 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL+++D++ E + L G+ +DG L + L++LD+MLPG DG + Sbjct: 33 RILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSDGIE 92 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-HHA 120 + + +R P++ LTA+ D VRGL+SGA+DY+ KPF +EL+ARVRA+LR Sbjct: 93 VCRQIRGESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQK 152 Query: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 TL I+ + +D H V+R I+LT EF LL LA + ++ R ++ ++WG Sbjct: 153 APETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRELLLEQVWGYR 212 Query: 181 FDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYS 217 +DT V+V ++RLR+K++ DP +++ T+RG+GY Sbjct: 213 HAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >UniRef50_B0RUJ6 Two-component system regulatory protein n=85 Tax=cellular organisms RepID=B0RUJ6_XANCB Length = 248 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 131/225 (58%), Gaps = 5/225 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L++EDN+ E + + L G+ +D DG DG LA ++ Y +++LD+MLP +DG ++ Sbjct: 22 VLVVEDNRNISEMIGEYLEGRGFEVDYAVDGLDGYRLAAENSYDVVVLDLMLPRLDGIEV 81 Query: 63 LQTLRT--AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH-- 118 + LR K TPV+ LTARD++DD++ GL GA+DYL KPF+ EL AR+RA +R+ Sbjct: 82 CRRLRNDARKSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRRERR 141 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + L+++ L +D VS +R + L+ +LL +L + ++ R I EIWG Sbjct: 142 QVGSEVLKVADLVLDPVSMRATRAGTELQLSPIGLRLLTILMRESPRVVTRQEIEREIWG 201 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 N D++T+ + LR +D PF L+ T++ GY + + Sbjct: 202 -NGLPDSDTLRSHLYNLRKIIDKPFDRPLLHTVQSAGYRIADIAQ 245 >UniRef50_B9L7R6 Response regulator receiver domain protein n=2 Tax=Nautiliaceae RepID=B9L7R6_NAUPA Length = 221 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 137/219 (62%), Gaps = 2/219 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKILLIED+++ + + + + GY ID DG +GLY+A ++Y ++I+D MLP + G Sbjct: 1 MKILLIEDDEKIAKNIEKVFRQIGYRIDIAKDGEEGLYMAQNNNYDVLIVDWMLPKISGI 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 +L+ L+ K TP + LTA+ ++D+V GL+ A+DYL KPF F EL+ARV+A R+ + Sbjct: 61 DLLKKLKKEKNTPALILTAKSDIEDKVEGLNV-ADDYLTKPFEFEELIARVKALYRRSNN 119 Query: 121 LN-STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 LN + + ++ L ++ + V R I LT K+F+LL L +I+ +I S +W + Sbjct: 120 LNDNIIRVADLELNPETKEVRRAGKLIELTAKQFELLKYLMINKNKIVNTDMIQSNLWEM 179 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 + + ++N ++V I LR K+D F +KLI T RGMG+ Sbjct: 180 DDEINSNVINVYISHLRKKIDKDFDKKLIKTYRGMGFKL 218 >UniRef50_B1ZQC8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=B1ZQC8_OPITP Length = 241 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 129/221 (58%), Gaps = 2/221 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+I+D++R +T+ L G+ + A + RDGL D L+ILD+MLP DG Sbjct: 17 RVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTDGLA 76 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + + +R + P+I LTAR V DR+ GL+ GA+DYL KPF EL+AR++A LR+ Sbjct: 77 VCREVRADSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRRGTRD 136 Query: 122 NS-TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 ++ L + L ++ + SV + LT EF+LL LA G ++ R I GI+ Sbjct: 137 DAEALRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSRDRILDGTRGID 196 Query: 181 FDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFVA 220 +D+ ++D+ + RLR K+ DDP I T+RG+GYSF+ Sbjct: 197 WDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSFIG 237 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 122/226 (53%), Gaps = 10/226 (4%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M IL+++D Q + + L G+ I +G+D + L ILD+MLP +DG+ Sbjct: 3 MNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGF 62 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + Q +R PVI LTA++ D++ GL GA+DY+ KPF EL+ARV+AQLR+ Sbjct: 63 TLCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFTK 122 Query: 121 LNST--------LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 NS + SGL +D +H + + I+LT KEF +LW+L S G ++ + Sbjct: 123 YNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEEL 182 Query: 173 ASEIWGIN-FDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGY 216 E+WG F + NTV V IR LR K+ K I T+ G+GY Sbjct: 183 FHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGY 228 >UniRef50_C6D1N2 Two component transcriptional regulator, winged helix family n=3 Tax=Bacillales RepID=C6D1N2_PAESJ Length = 232 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 83/228 (36%), Positives = 128/228 (56%), Gaps = 10/228 (4%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+L++ED+ +T L GY + +DG L A +IILDIM+P M+G+ Sbjct: 1 MKVLVVEDDFSISSAITYALEREGYTVRTAADGEKALEKAEVFKPDVIILDIMMPKMNGY 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 ++ + L ++ V+ LT ++ + D+V GL+ GA+DY+ KPF E+LARV+ R+ H Sbjct: 61 EVFRKLNQKERPGVLLLTVKNDIVDKVLGLELGADDYMTKPFDIREVLARVKVLYRRSHF 120 Query: 121 L---NS-----TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 NS T E+ GL ++ S +V D + LT KEF LL LA ++ R V+ Sbjct: 121 TTFKNSEIEKVTTEMGGLSIEPYSRTVRMDGQELDLTLKEFDLLVELACNPDQVYSRKVL 180 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 ++W I++ T TVD+ I+RLR K+ LI TI G+GY F++ Sbjct: 181 LKKVWDIHYAGGTRTVDIHIQRLRKKLGR--WHGLIQTINGIGYKFIS 226 >UniRef50_A0PNV3 Two component regulator-receiver domain n=6 Tax=Actinomycetales RepID=A0PNV3_MYCUA Length = 247 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 81/220 (36%), Positives = 133/220 (60%), Gaps = 8/220 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGR--DGLYLALKDDYALIILDIMLPGMDG 59 ++L++ED++ +E V + L++ GY D SDG + + L+ D L++LD+MLPG DG Sbjct: 28 RVLVVEDSETIREMVNEALADVGYHTDTRSDGEGLEEVLQGLRPD--LVVLDVMLPGRDG 85 Query: 60 WQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + ++ +R ++ +TARD + DR+RGLD GA+DY VKPF +EL++RV A LR+ Sbjct: 86 FALIDVIREWGDIGIVLITARDGLPDRLRGLDGGADDYAVKPFELAELVSRVGAVLRRRG 145 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 L +++ L +DS + +RD + LT E +LL L + G I+ T I + +WG Sbjct: 146 RLPRVVQVGDLMLDSEAGVAARDGHQLDLTATELRLLDFLVQQRGRIVSATQILNAVWG- 204 Query: 180 NFDS-DTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +D+ D N V V + LR K++ P +++ T+RG+GY Sbjct: 205 -YDAYDANLVQVHVSSLRRKLEAHGP-RIVQTVRGIGYRL 242 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P76340 Probable transcriptional regulatory protein yedW... 347 2e-94 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 332 8e-90 UniRef50_Q2JAC4 Two component transcriptional regulator, winged ... 329 4e-89 UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC... 329 5e-89 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 328 9e-89 UniRef50_C8WRL2 Two component transcriptional regulator, winged ... 327 1e-88 UniRef50_Q026B5 Two component heavy metal response transcription... 327 2e-88 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 326 3e-88 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_B5JD22 Response regulator receiver domain protein n=1 T... 324 2e-87 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 322 4e-87 UniRef50_C5CE19 Two component transcriptional regulator, winged ... 322 6e-87 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 322 8e-87 UniRef50_B8DZ94 Two component transcriptional regulator, winged ... 321 8e-87 UniRef50_Q3B3K7 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax... 320 2e-86 UniRef50_Q2SPE2 Response regulator consisting of a CheY-like rec... 320 2e-86 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 319 4e-86 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 319 5e-86 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 319 5e-86 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 318 7e-86 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 318 7e-86 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 318 1e-85 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 317 1e-85 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 317 2e-85 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 317 3e-85 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 316 4e-85 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 316 4e-85 UniRef50_C7NAQ8 Two component transcriptional regulator, winged ... 316 4e-85 UniRef50_C7LY45 Two component transcriptional regulator, winged ... 315 5e-85 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 315 5e-85 UniRef50_D2QKB6 Two component transcriptional regulator, winged ... 315 5e-85 UniRef50_Q1AZL3 Two component transcriptional regulator, winged ... 315 6e-85 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 315 8e-85 UniRef50_Q1IVX4 Two component transcriptional regulator, winged ... 315 8e-85 UniRef50_C6QDD0 Two component transcriptional regulator, winged ... 315 9e-85 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 314 1e-84 UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C... 314 1e-84 UniRef50_B9XE94 Two component transcriptional regulator, winged ... 314 1e-84 UniRef50_B4WME0 Response regulator receiver domain protein n=1 T... 314 2e-84 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 313 2e-84 UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Breviba... 313 2e-84 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 313 2e-84 UniRef50_B8G179 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacter... 313 3e-84 UniRef50_C7PP48 Two component transcriptional regulator, winged ... 312 4e-84 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 312 4e-84 UniRef50_B1ZVS5 Two component transcriptional regulator, winged ... 312 5e-84 UniRef50_C4XS15 OmpR family two-component response regulator n=2... 312 6e-84 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 312 8e-84 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 311 1e-83 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 311 1e-83 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 311 1e-83 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 310 2e-83 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 310 2e-83 UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=... 310 2e-83 UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepI... 310 2e-83 UniRef50_A6X2C4 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_A6WIX6 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_A0LPJ2 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 310 3e-83 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 309 3e-83 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_Q1IUY4 Two component transcriptional regulator, winged ... 309 5e-83 UniRef50_B2J1E6 Multi-component transcriptional regulator, winge... 309 5e-83 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 308 6e-83 UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=A... 308 8e-83 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 308 9e-83 UniRef50_D1BPS5 Two component transcriptional regulator, winged ... 308 9e-83 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 308 1e-82 UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax... 307 1e-82 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 307 1e-82 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 307 1e-82 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 307 2e-82 UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desul... 307 3e-82 UniRef50_C0Z5X8 Two-component response regulator n=143 Tax=Firmi... 307 3e-82 UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepI... 307 3e-82 UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID... 306 4e-82 UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID... 306 4e-82 UniRef50_D2QX61 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_A5FEG3 Two-component transcriptional regulator, winged ... 305 6e-82 UniRef50_C4L340 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_D1B9J7 Two component transcriptional regulator, winged ... 305 9e-82 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_C7PAJ7 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_UPI00016B25CE two component transcriptional regulator, ... 304 1e-81 UniRef50_B8I014 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=B... 304 1e-81 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 304 1e-81 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 304 1e-81 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 304 2e-81 UniRef50_B7K2S9 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 304 2e-81 UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax... 304 2e-81 UniRef50_D2PLZ1 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 303 2e-81 UniRef50_B7K7W8 Multi-component transcriptional regulator, winge... 303 2e-81 UniRef50_A6CDX9 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_C7IFX1 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_C9NWS1 DNA-binding heavy metal response regulator n=1 T... 303 4e-81 UniRef50_Q8A9Y3 Two-component system response regulator n=8 Tax=... 302 4e-81 UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 T... 302 5e-81 UniRef50_UPI00017468BB two component transcriptional regulator, ... 302 6e-81 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 302 7e-81 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 302 7e-81 UniRef50_C6Q063 Two component transcriptional regulator, winged ... 302 8e-81 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 302 8e-81 UniRef50_Q6AQP4 Probable two-component system response regulator... 301 1e-80 UniRef50_D1C280 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_B4WPA6 Response regulator receiver domain protein n=1 T... 301 1e-80 UniRef50_B2IXN9 Multi-component transcriptional regulator, winge... 301 1e-80 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 301 1e-80 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 301 1e-80 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 301 1e-80 UniRef50_A5VEY8 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_A6CWR0 Two-component system response regulator (Pho fam... 301 1e-80 UniRef50_C6VX71 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_A4J267 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 300 2e-80 UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepI... 300 2e-80 UniRef50_B4WMF1 Response regulator receiver domain protein n=2 T... 300 2e-80 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 300 2e-80 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 300 2e-80 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 300 2e-80 UniRef50_B8G869 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 300 2e-80 UniRef50_C6VUR1 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_B4U9M6 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_A5UWJ8 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_A6TKQ5 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_A4CE30 Probable two-component response regulator transc... 300 3e-80 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 299 4e-80 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 299 4e-80 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 299 4e-80 UniRef50_A4AL32 Putative two-component system response regulator... 299 5e-80 UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=... 299 5e-80 UniRef50_B5D1V8 Putative uncharacterized protein n=2 Tax=Bactero... 299 5e-80 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 299 5e-80 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 299 5e-80 UniRef50_Q2IUG0 Two component transcriptional regulator, winged ... 298 7e-80 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 298 7e-80 UniRef50_A9BP99 Two component transcriptional regulator, winged ... 298 8e-80 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 298 9e-80 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 298 1e-79 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 298 1e-79 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 298 1e-79 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 298 1e-79 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 297 1e-79 UniRef50_A6M1X5 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 297 2e-79 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63... 297 2e-79 UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostri... 297 2e-79 UniRef50_UPI0001B559F0 two-component system, response regulator ... 297 3e-79 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 296 3e-79 UniRef50_Q1R1E2 Two component heavy metal response transcription... 296 3e-79 UniRef50_Q020N6 Two component transcriptional regulator, winged ... 296 3e-79 UniRef50_B5JI66 Response regulator receiver domain protein n=1 T... 296 3e-79 UniRef50_D1C5Q5 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 296 4e-79 UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleu... 296 5e-79 UniRef50_B4VMC7 Response regulator receiver domain protein n=1 T... 295 6e-79 UniRef50_B5W2T9 Multi-component transcriptional regulator, winge... 295 6e-79 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 295 6e-79 UniRef50_C6LFE5 DNA-binding response regulator CsrR n=2 Tax=Firm... 295 7e-79 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 295 7e-79 UniRef50_C8WKQ8 Two component transcriptional regulator, winged ... 295 7e-79 UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicut... 295 7e-79 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 295 8e-79 UniRef50_B4B6S6 Multi-component transcriptional regulator, winge... 295 8e-79 UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax... 295 8e-79 UniRef50_Q2G7V2 Two component transcriptional regulator, winged ... 295 9e-79 UniRef50_UPI0001C16C1D manR (Two component Transcriptional regul... 294 1e-78 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 294 1e-78 UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteoba... 294 1e-78 UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax... 294 1e-78 UniRef50_C9XJX9 Two-component system response regulator n=108 Ta... 294 2e-78 UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax... 294 2e-78 UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteoba... 294 2e-78 UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 294 2e-78 UniRef50_A4SHT1 Two-component system response regulator n=10 Tax... 293 2e-78 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 293 2e-78 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 293 2e-78 UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chrooco... 293 3e-78 UniRef50_A7HL55 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_B8HQE6 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_C0Z6J5 Two-component response regulator n=1 Tax=Breviba... 293 3e-78 UniRef50_A4AF30 Two component transcriptional regulator, winged ... 293 4e-78 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 292 4e-78 UniRef50_C0Z6C7 Two-component response regulator n=3 Tax=Bacilla... 292 5e-78 UniRef50_Q97LA9 Response regulator (CheY-like receiver domain an... 292 5e-78 UniRef50_B8I272 Two component transcriptional regulator, winged ... 292 5e-78 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 292 6e-78 UniRef50_C6D1N2 Two component transcriptional regulator, winged ... 292 6e-78 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 292 7e-78 UniRef50_Q52990 Phosphate regulon transcriptional regulatory pro... 292 8e-78 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 292 8e-78 UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacte... 292 8e-78 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 292 8e-78 UniRef50_Q1LCD6 Two component transcriptional regulator, winged ... 292 9e-78 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 291 1e-77 UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacill... 291 1e-77 UniRef50_C4L2J9 Two component transcriptional regulator, winged ... 291 1e-77 UniRef50_B1ZS16 Two component transcriptional regulator, winged ... 291 1e-77 UniRef50_C9ZA01 Putative two-component system response regulator... 291 1e-77 UniRef50_Q2JX56 DNA-binding response regulator n=29 Tax=Cyanobac... 291 2e-77 UniRef50_B4DAQ3 Two component transcriptional regulator, winged ... 290 2e-77 UniRef50_C6LI81 DNA-binding response regulator DltR n=2 Tax=Clos... 290 2e-77 Sequences not found previously or not previously below threshold: UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 313 2e-84 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 305 5e-82 UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator... 301 1e-80 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 301 1e-80 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 301 1e-80 UniRef50_B8HL49 Multi-component transcriptional regulator, winge... 300 2e-80 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 299 5e-80 UniRef50_B2JBG7 Two component transcriptional regulator, winged ... 298 6e-80 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 298 1e-79 UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanyl... 298 1e-79 UniRef50_D1VF89 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_B8G223 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 297 2e-79 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_Q83N47 Two-component system response regulator n=8 Tax=... 296 4e-79 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 296 5e-79 UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID... 296 5e-79 UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT 295 5e-79 UniRef50_C7MME5 Response regulator with CheY-like receiver domai... 295 9e-79 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 295 1e-78 UniRef50_B5VWD3 Multi-component transcriptional regulator, winge... 295 1e-78 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 295 1e-78 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 294 2e-78 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 292 5e-78 UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Ta... 292 6e-78 UniRef50_B4WP26 Response regulator receiver domain protein n=1 T... 291 1e-77 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 291 1e-77 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 291 1e-77 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 291 1e-77 UniRef50_B2IZ13 Sensor protein n=11 Tax=Cyanobacteria RepID=B2IZ... 291 1e-77 UniRef50_B4WSX3 Response regulator receiver domain protein n=1 T... 290 2e-77 UniRef50_B4WG55 Response regulator receiver domain protein n=1 T... 290 2e-77 >UniRef50_P76340 Probable transcriptional regulatory protein yedW n=131 Tax=Proteobacteria RepID=YEDW_ECOLI Length = 223 Score = 347 bits (891), Expect = 2e-94, Method: Composition-based stats. Identities = 223/223 (100%), Positives = 223/223 (100%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW Sbjct: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA Sbjct: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 Query: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN Sbjct: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK Sbjct: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 332 bits (852), Expect = 8e-90, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 128/226 (56%), Gaps = 7/226 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL++ED+ +E + L++ GY ++ DG L +L+ILD+MLPG+DG++ Sbjct: 31 KILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGFE 90 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + + +RT P++ LTAR S D+V GL++GA+DYL KPF ELLAR++A LR+ Sbjct: 91 LCRLIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQTQ 150 Query: 122 NST------LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 NS L+I L + H V R+ +++ + KEF L + + R + + Sbjct: 151 NSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQLLEK 210 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVA 220 +WG ++ T TVDV I LR K++ DP + + T+RG GY F Sbjct: 211 VWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFEE 256 >UniRef50_Q2JAC4 Two component transcriptional regulator, winged helix family n=90 Tax=cellular organisms RepID=Q2JAC4_FRASC Length = 283 Score = 329 bits (845), Expect = 4e-89, Method: Composition-based stats. Identities = 100/220 (45%), Positives = 137/220 (62%), Gaps = 2/220 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED RT + +GL E GY +D V DG D ++ A + Y I+LD+MLPG+DG+ Sbjct: 30 MRVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDGF 89 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++ + LR A + PV+ LTAR VDDR+RGLD+GA+DYL KPFSF EL AR+RA +R+ Sbjct: 90 EVCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGA 149 Query: 120 ALNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 T L I LR+D H V R + L+ KEF LL LL E++ RT I +W Sbjct: 150 VERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVWD 209 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 FD +N VD +R +R K+D P LI T+RG+GY Sbjct: 210 FAFDGTSNIVDQYVRYVRRKIDIPDGPSLIETVRGVGYRL 249 >UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=6 Tax=Bacteria RepID=B3DZZ9_METI4 Length = 268 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 87/223 (39%), Positives = 135/223 (60%), Gaps = 2/223 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED + ++++ L E G+ +D S G + L + L Y +LDIMLPG DG Sbjct: 46 MRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGI 105 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +L++LR P++ L+AR D++ GL+SGA+DYL KPFS EL+AR+RA +R+ Sbjct: 106 SVLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTA 165 Query: 120 ALN-STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + S ++ L ++ ++ V R I LT KEF +L LL G + RT + +W Sbjct: 166 GIGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVWN 225 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 +FD TN VDV I++LR K+D+ +KLI T+RG+GY A+ Sbjct: 226 YHFDPGTNLVDVYIQKLRKKIDEGEEQKLIQTVRGVGYKIEAL 268 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 328 bits (843), Expect = 9e-89, Method: Composition-based stats. Identities = 89/218 (40%), Positives = 133/218 (61%), Gaps = 2/218 (0%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL++ED + +++ L GY + V+DG GL A + + LI+LD MLPG+ G I Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 63 LQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + LR + P+I LTA+D + DRV GLD+GA+DY+VKPF+ ELLARVRA LR++H Sbjct: 66 CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNHEE 125 Query: 122 NS-TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 + L+ L ++ + V R + I LT KEF LL L S +++ R I +WG + Sbjct: 126 DPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWGYD 185 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 F D+N ++V +R LR K++ ++LI T+RG+GY Sbjct: 186 FMGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVL 223 >UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD Length = 231 Score = 327 bits (841), Expect = 1e-88, Method: Composition-based stats. Identities = 100/221 (45%), Positives = 133/221 (60%), Gaps = 3/221 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED R + Q L E Y +D DG G LAL D Y L ILDIMLP M G Sbjct: 1 MRILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGL 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 IL+ +R A QTPV+ LTA+D+V+DRV GLD+GA+DYLVKPF ELLARVRA R+ Sbjct: 61 DILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRTG 120 Query: 120 AL--NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + +E R+D + +V+R+ + LT KEFQLL L +++ + VI +W Sbjct: 121 QIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVW 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 G + D N V+ + LR K+D+P I T+RG+GY F Sbjct: 181 GPDADVIGNAVENYVHFLRKKIDEPDLPSYITTVRGVGYMF 221 >UniRef50_Q026B5 Two component heavy metal response transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q026B5_SOLUE Length = 238 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 103/224 (45%), Positives = 146/224 (65%), Gaps = 1/224 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL++ED +R +++ +GL AGY +DA G L L DY L++LD MLP MDG Sbjct: 1 MRILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRMLPDMDGL 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 Q+L+ +R+ K PV+ L+AR ++DDRV+GL+ GA+DYLVKPF+F ELLARVRA LR+ Sbjct: 61 QVLEKMRSRKAGPPVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRRGQ 120 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 L++S L +D + V+R +I L KEF +L + G + RT+I +W + Sbjct: 121 PTPERLQVSDLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEHVWDM 180 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 ++D TN VDV IR LR+K+DD F +KLI T+RG+GY A K Sbjct: 181 DYDGLTNIVDVYIRHLRSKIDDRFQQKLIQTVRGIGYMIEAPDK 224 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 79/231 (34%), Positives = 132/231 (57%), Gaps = 9/231 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 +++L+ +D + ++ + + L Y +D DG + L L + Y L+ILD+M+P +DG Sbjct: 4 IRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGI 63 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ--- 117 ++ + LR P++ LTA+D D++ GL GA+DY+ KPFS +E++AR++A +R+ Sbjct: 64 EVCRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFLV 123 Query: 118 -----HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 + + L GL +D + V+ + I+LT KE +LL AS ++ +T + Sbjct: 124 LGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQL 183 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAVK 222 +W N+ D NTV V IR+LR K++ DP K I T+ G+GY FV K Sbjct: 184 FRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVGEK 234 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 124/224 (55%), Gaps = 6/224 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D + ++ + L + Y S+G++ L L +D + L++LD+M+P MDG Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA- 120 +R P+I LTAR DR+ GL GA+DY+ KPFS ELLAR+ A LR+ H Sbjct: 67 ACMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHRF 126 Query: 121 ---LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 ++TL I L +D+ S SV I+LTRKEF LL L ++ R + +IW Sbjct: 127 TVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLDQIW 186 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 G ++ + TVD I+ LR K+ + I T+ G+GY F V Sbjct: 187 GADYIGNLRTVDTHIKTLRLKLGEAGGS--IQTVWGIGYKFEEV 228 >UniRef50_B5JD22 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD22_9BACT Length = 239 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 96/220 (43%), Positives = 136/220 (61%), Gaps = 2/220 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+LL+ED ++ ++V +GL E GYV++ DG DG A Y +I+LDIMLPG DG Sbjct: 17 MKVLLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIMLPGRDGL 76 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 IL++LR + T PVI +TAR +D+R+ GL+ GA+DYL KPF EL+AR++A R+ Sbjct: 77 SILKSLRKSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSS 136 Query: 120 ALN-STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + S +++ L ++ + V RD + LT +EF LL L G ++ RT I +WG Sbjct: 137 GKSLSMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG 196 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +FD TN VDV ++RLR KVD LI T+RG GY Sbjct: 197 YDFDPSTNVVDVCVQRLRKKVDAGHDVHLIETVRGAGYRM 236 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 322 bits (828), Expect = 4e-87, Method: Composition-based stats. Identities = 84/220 (38%), Positives = 136/220 (61%), Gaps = 1/220 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+I+D+ + + + L+ GY ++ +DG G+ +A ++ L+ILDIMLPG+DGW+ Sbjct: 4 RVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGWE 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 I Q R TP++ L+ARD V+ +V+GL+ GA+DYL KPF+ ELLARV+A LR+ Sbjct: 64 ICQRFRKDNFTPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRRRITA 123 Query: 122 NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINF 181 N ++ S L+MD + V R +TLT +EF LL +++ R I +WG++F Sbjct: 124 NKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVWGLDF 183 Query: 182 DSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 +N ++V I LR K++D + ++I T+RG+GY Sbjct: 184 TGGSNVLEVYINMLRQKIED-YGSRIIHTVRGVGYVLKEQ 222 >UniRef50_C5CE19 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE19_KOSOT Length = 228 Score = 322 bits (827), Expect = 6e-87, Method: Composition-based stats. Identities = 87/222 (39%), Positives = 129/222 (58%), Gaps = 3/222 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL++EDN++ E + + L G+++D DG +GL LAL +Y IILDI+LPGM G Sbjct: 1 MKILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGI 60 Query: 61 QILQTLR--TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 +I + LR Q P++ LTA SV++RV GL+ GA+DY+ KPF EL+ARVRA +R++ Sbjct: 61 EICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRN 120 Query: 119 HAL-NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + TL+ L M+ + VS + L+ KEF LL L G + R I ++W Sbjct: 121 QVVRQETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKLW 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 F+ +N VDV + LR K+ ++ I T+ +GY Sbjct: 181 ESGFEPRSNIVDVYVLYLRKKLKPFGYDEKIETVHNIGYRLK 222 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 96/233 (41%), Positives = 138/233 (59%), Gaps = 16/233 (6%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL+++D +E ++ L ++GY ++ +DGR L A + L++LDIMLP +DG Sbjct: 1 MQILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGL 58 Query: 61 QILQTLRTAKQT---PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 ++ + L+ QT P+I LTA+ DRV GL+ GA+DY+VKPFS ELLARV+A LR+ Sbjct: 59 EVCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRR 118 Query: 118 HHALN----------STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEII 167 ++ +L I GLR+D S+ + +I LT KE++LL LL + G Sbjct: 119 SASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAF 178 Query: 168 PRTVIASEIWGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 219 R + IWG + DT TVDV IR LRAK+ DDP I T+RG+GY F Sbjct: 179 SRDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRFA 231 >UniRef50_B8DZ94 Two component transcriptional regulator, winged helix family n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DZ94_DICTD Length = 224 Score = 321 bits (825), Expect = 8e-87, Method: Composition-based stats. Identities = 97/224 (43%), Positives = 139/224 (62%), Gaps = 4/224 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK--DDYALIILDIMLPGMD 58 MKIL+IED ++ + +GL + GYV+D DG + Y+ + Y L+ILDIMLP +D Sbjct: 1 MKILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKID 60 Query: 59 GWQILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 G + + LR Q P++ LTA+D V+D++ GL+SGA+DYLVKPFS+ ELLAR+RA LR+ Sbjct: 61 GISLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLRR 120 Query: 118 HHAL-NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 L + L++ + +D+VS V R +I I LT KEF +L L II + I S + Sbjct: 121 PKNLMPTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQIISHV 180 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 WG D+ +N V+ I+ LR K++ E +I TIRGMGY Sbjct: 181 WGYESDTLSNVVEAHIKNLRKKLERKRDENIIETIRGMGYRIKE 224 >UniRef50_Q3B3K7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteroidetes/Chlorobi group RepID=Q3B3K7_PELLD Length = 232 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 88/217 (40%), Positives = 129/217 (59%), Gaps = 1/217 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L+IED ++ +GL E + +D DG GL L + +DY L ++D MLP + G Sbjct: 1 MRLLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDYDLCLIDWMLPKLSGI 60 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++ + LR PVI LTARD++DD V GL +GA+DY+ KPF+F ELLAR+RA+LRQ+ Sbjct: 61 EVCRQLRKAGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLRQNT 120 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 L L +D +H + +TLT KEF LL L + R+ I +W I Sbjct: 121 PTTGPLTAGALWLDPETHRAGCNRHDLTLTPKEFALLEYLLRNLDRVCTRSRIIEHVWDI 180 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +FD+DT+ +DV + LR K++ LI T+RG+GY Sbjct: 181 HFDADTSVIDVYVNFLRRKLEAAGCTGLIKTVRGVGY 217 >UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax=cellular organisms RepID=CZCR_RALME Length = 225 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 122/223 (54%), Positives = 167/223 (74%), Gaps = 1/223 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED RT E++ +GLSE+G+V+D ++G DGL++A + DY +IILD+MLPGMDGW Sbjct: 1 MRVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGW 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 +++++R+ +TPV+ LTA D V DRVRG + GA+DYLVKPF+F+ELLAR+R LRQ + Sbjct: 61 TVIKSIRSKSETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQSTS 120 Query: 121 LNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 S L I+ L +D + V R I LT +EF LL LL R GE++ RT IAS++WG+ Sbjct: 121 KESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSLLHLLMRRRGEVLSRTTIASQVWGV 180 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 NFD+DTN VDVAIRRLR+KVDDPF +KLI T+RGMGY + Sbjct: 181 NFDTDTNVVDVAIRRLRSKVDDPFDQKLIHTVRGMGYVLDPER 223 >UniRef50_Q2SPE2 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=18 Tax=Proteobacteria RepID=Q2SPE2_HAHCH Length = 226 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 97/222 (43%), Positives = 149/222 (67%), Gaps = 4/222 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L+IED++ ++++GL E+GYV+DA +G+ GL++A + Y L+++D MLP +DG Sbjct: 1 MRVLVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLVDRMLPELDGL 60 Query: 61 QILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +++ LR +TPV+ L+A VDDRV+GL +G +DYLVKPFSFSELLAR+ A LR+ Sbjct: 61 SVVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRRSQ 120 Query: 120 ALNS---TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 TL+++ L MD ++ +V R+ +SI L +EF+LL G+++ RT++ ++ Sbjct: 121 QQQDVVTTLKVADLEMDLLARTVKRNGLSIDLQPREFRLLEYFMRNPGQVLTRTMLLEKV 180 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 W +FD TN +DV I RLRAK+D F L+ TIRG GY Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKIDKDFETPLLHTIRGAGYVL 222 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 319 bits (819), Expect = 4e-86, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 130/223 (58%), Gaps = 5/223 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+IED+ + + L G+ + DG++GL +A Y +I+LD+MLP M G + Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + + +R Q P+I LTA+D + D+V G D GA+DY+ KPFS ELLAR++A LR+ Sbjct: 64 VCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKKS 123 Query: 122 ---NSTLEISGLRMDSVSHSVSRD--NISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 E L ++ ++ V RD I L+++EF+LL L G ++ R I E+ Sbjct: 124 VVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILEEV 183 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 WG ++ + N +D+ I+ LR K+D P+ K I T+RG+G+ F Sbjct: 184 WGFDYIGNDNILDLYIKYLRDKIDRPYERKFIQTVRGIGFIFK 226 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 87/222 (39%), Positives = 126/222 (56%), Gaps = 7/222 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D R +E + + L AGYV + DG L L + L+ILD+M+P MDG Sbjct: 74 KILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDGMT 133 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQL-R--- 116 L+ +R TPVI LTAR D++ GL+ GA+DY+VKPFS EL+ARV+A L R Sbjct: 134 CLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTMP 193 Query: 117 QHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + A + T+ L +D+ SH+V ++LT KEF LL LAS G + R I ++ Sbjct: 194 RSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQKV 253 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 W ++ + TVD ++ LR + IAT+ G+GY F Sbjct: 254 WNYDYFGEDRTVDTHVKMLRGHLGK--CRGYIATVWGIGYKF 293 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 129/225 (57%), Gaps = 7/225 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+++D++ V L G+ +D DG+ G K +Y +ILDIMLP MDGW+ Sbjct: 5 QVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGWE 64 Query: 62 ILQTLRTA---KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 + +R + + P+I LTA+ DD++ GL GA+DY++KPFS EL+ARVRA +R+ Sbjct: 65 VCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRRD 124 Query: 119 HAL---NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 + LE L +D+ S+ V + + L KEF+LL+LL + R I + Sbjct: 125 QDFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEK 184 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFV 219 IWG +F T TVD ++R+R K++ + + LI T+ G+GY F Sbjct: 185 IWGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFE 229 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 318 bits (818), Expect = 7e-86, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 125/227 (55%), Gaps = 5/227 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +ILL+ED + ++ V L Y + AV DG+D L K + L+ILD+MLP + G + Sbjct: 10 RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGER 69 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ---- 117 + + +R P+I LTA+ V+DR+ GL+ GA+DYLVKPFS EL+ARVRA LR+ Sbjct: 70 VCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHAD 129 Query: 118 HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 LE L +D H V + LT EF+LL L+ G + R + ++ Sbjct: 130 SEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKVL 189 Query: 178 GINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFVAVKK 223 G +F+ T+D ++ LRAK+ D P K + T+ G+GY F K Sbjct: 190 GYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFEDPTK 236 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 318 bits (818), Expect = 7e-86, Method: Composition-based stats. Identities = 93/224 (41%), Positives = 135/224 (60%), Gaps = 5/224 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 IL++ED ++ + L GY + +G +GL A + Y+L++LD+MLPG+ G + Sbjct: 5 HILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLE 64 Query: 62 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 +L+ LR QTPVI LTARDS+ D+V GLD GANDY+ KPF ELLAR+RA LRQ+ Sbjct: 65 VLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGT 124 Query: 121 LNST----LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 L LR++ + V R + + LT +EF LL + +++ R I S + Sbjct: 125 KTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSV 184 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 WG ++ DTN VDV IR +R K+D P+ ++LI TIRG+GY+ Sbjct: 185 WGFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAIKG 228 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 128/223 (57%), Gaps = 5/223 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL ++D+ + + + L + G+ + S G + L A + L+ILD+M+PGMDG++ Sbjct: 4 RILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFE 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ---- 117 Q L+ ++ P+I L+AR DRV G G +DY KPFS +EL RV+A LR+ Sbjct: 64 TYQKLKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLGEP 123 Query: 118 HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 L + L+ L +D +V+ +N + LT K+F+LLWL+AS + + + +IW Sbjct: 124 KVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDKIW 183 Query: 178 GINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFV 219 +F D NTV V IRRLR KV+ DP + I T+ GMGY F Sbjct: 184 DSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFE 226 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 81/229 (35%), Positives = 130/229 (56%), Gaps = 11/229 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D R + + L Y ID +G + + L+ +Y LI+LD+M+PG DG + Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + + +R K TP+I LTA+ +RV+G ++G +DY+VKPFS E++ RV+A LR+ Sbjct: 68 VCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQT 127 Query: 122 N---------STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 + + L S L +D +H V+ D ++LT KE++LL+ LA ++ R + Sbjct: 128 SYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREKL 187 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVDD--PFPEKLIATIRGMGYSFV 219 E+W F D TVD ++RLR K++ P K I T+ G+GY F Sbjct: 188 LKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFE 236 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 317 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 85/221 (38%), Positives = 130/221 (58%), Gaps = 6/221 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +I ++ED +R ++ L G+ + +G ++ ++ L++LD+MLPGMDG Sbjct: 6 RIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGMT 65 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 I + +R P+I LTA+D V+D+V GLD GA+DY+ KPF+ EL+AR+R LR+H Sbjct: 66 ICKRVREVSSLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHVPD 125 Query: 122 N------STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 N L++ L M + V D ++ LT+KE+ LL + ++ R I + Sbjct: 126 NGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQILEK 185 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +WG ++ DTN VDV IR LRAK+DD F EK I T+RG+GY Sbjct: 186 VWGYDYSGDTNVVDVYIRYLRAKLDDRFHEKYIYTVRGVGY 226 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 317 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 91/227 (40%), Positives = 124/227 (54%), Gaps = 10/227 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +ILLIED+Q + L Y + SDG +GL+L + LIILDIMLP MDG Q Sbjct: 4 RILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGLQ 63 Query: 62 ILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH-- 118 + Q LR TP++ LTA+ S DRV GL++GA+DYL KPFS EL ARV+A LR+ Sbjct: 64 VCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTDM 123 Query: 119 ------HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 + L L +D ++ + ITLT KEF LL +AS G++ R + Sbjct: 124 SQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREKL 183 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 +WG +TV+ I RLR K++ D K + T+ G+GY F Sbjct: 184 LDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 87/234 (37%), Positives = 138/234 (58%), Gaps = 15/234 (6%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D ++ L +AGY + +DG D L L L + I+LD+MLP +DG + Sbjct: 5 KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH- 119 + + LR K QTP+I +TA++ D+V GL+ GA+DY+ KPFS E+LAR++A +R+ Sbjct: 65 VTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTTP 124 Query: 120 ------------ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEII 167 A + + + L++D + V+R+ +I+LT KEF+LL R G ++ Sbjct: 125 DEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVL 184 Query: 168 PRTVIASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVA 220 R I + +WG ++ S+T VD+ I LR K++ DP +LI T+RG GY FV Sbjct: 185 SRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFVG 238 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 79/225 (35%), Positives = 120/225 (53%), Gaps = 8/225 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL+IEDN + G+ + V DG +G ++++ LIILDIMLP MDG Sbjct: 1 MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 I + +R P+I LTA+D+ D+V G + GA+DY+ KPFS L+AR++A +R++ A Sbjct: 61 TICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKA 120 Query: 121 L------NSTLEISGLRMDSVSHSVSRDNISIT-LTRKEFQLLWLLASRAGEIIPRTVIA 173 +E ++ + V + + LT KEF LL+ L ++ R + Sbjct: 121 TGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQLL 180 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 ++WG F D TVDV I+RLR K+ + T+ G+GY F Sbjct: 181 EQVWGYQFYGDERTVDVHIKRLRKKLASEDKP-FLYTVWGVGYKF 224 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 123/227 (54%), Gaps = 6/227 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 IL+++D + + L + G+ + SDGR+ L D+ LI+LD+MLPG+DG Sbjct: 3 HILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGLT 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 I + +R A TP+I LTA+ D++ GL+ GA+DY+ KPF+ EL+AR+RA LR+ A Sbjct: 63 ICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAEAA 122 Query: 122 NST-----LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + L + L + + LT +E+ LL LLA G + R + + Sbjct: 123 SRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDLV 182 Query: 177 WGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFVAVK 222 WG +F D TVDV +RR+R K+ +DP + + T G+GY A Sbjct: 183 WGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEAEP 229 >UniRef50_C7NAQ8 Two component transcriptional regulator, winged helix family n=10 Tax=Bacteria RepID=C7NAQ8_LEPBD Length = 227 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 89/220 (40%), Positives = 143/220 (65%), Gaps = 2/220 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED ++ +T+ L + Y +D+ DG + + +Y IILDIMLP +DG+ Sbjct: 1 MRLLVVEDEKKLNGLITKKLEKEYYGVDSCFDGEEAIRYVEGTEYDAIILDIMLPKLDGF 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++++ +R K P++ LTARD++DD+V+GLD GA+DYLVKPF F EL+AR+R LR++ Sbjct: 61 EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120 Query: 120 A-LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 ++ + ++ L++D + +V RD + I L+ +E+ +L L G+I+PR I IW Sbjct: 121 GNADNVITVANLKVDLDAKTVFRDGVLIKLSGREYSILEYLIRNKGKILPRERIEDHIWN 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 ++ TN +DV IR LR K+DD + KLI TIRG+GY Sbjct: 181 YEYEGGTNVIDVYIRYLRKKIDDSYTPKLIHTIRGLGYVL 220 >UniRef50_C7LY45 Two component transcriptional regulator, winged helix family n=2 Tax=Actinobacteria (class) RepID=C7LY45_ACIFD Length = 236 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 91/222 (40%), Positives = 136/222 (61%), Gaps = 2/222 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L+++D + + +GLS G+ +D SDG GL +A Y I+LDIMLPG++G+ Sbjct: 1 MRLLIVDDEENLLASLKRGLSAEGFAVDTASDGTTGLDMARHAPYDCIVLDIMLPGVNGF 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 + Q LR + TP++ LTA+D D LD+GA+D L KPFSF+ L+AR+RA LR++ Sbjct: 61 KFTQLLREERNWTPILMLTAKDGEYDEAEALDTGADDVLKKPFSFTVLVARIRALLRRNV 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + L+ L +D SH V+R N++I LT +EF L LL G ++ + I + +W Sbjct: 121 ESHPPILQAGDLTLDPASHRVTRGNVTIDLTTREFSFLELLLRNKGHVLRKQDIIAHVWD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 +F+ D+N V+V I LR K+D PF K I TIRG+GY Sbjct: 181 YDFEGDSNIVEVYIGYLRKKIDVPFGTKAITTIRGVGYRLEE 222 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 86/221 (38%), Positives = 125/221 (56%), Gaps = 4/221 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KILL+ED++ ++ L++ GY ++ DG + L + L++LDIMLP DGW+ Sbjct: 3 KILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGWE 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH-- 119 + + +R P+I LTA+D D+V GL GA+DY+ KPF ELLAR+ A LR++ Sbjct: 63 VCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQSD 122 Query: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + + + MD V +V + L+ +EF++L LL S G + R +I IWG Sbjct: 123 LSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHIWG 182 Query: 179 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSF 218 NF + VDV IR LR KV DDP K I T+R +GY F Sbjct: 183 ENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKF 223 >UniRef50_D2QKB6 Two component transcriptional regulator, winged helix family n=11 Tax=Bacteroidetes RepID=D2QKB6_9SPHI Length = 230 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 94/224 (41%), Positives = 137/224 (61%), Gaps = 4/224 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL++ED + +V +GL E +D DG+ G +AL + Y +I+LDI LP M+G+ Sbjct: 6 MKILVVEDEPKLASFVKKGLEEQSCEVDVAYDGQVGRNMALNNLYDVIVLDINLPKMNGF 65 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++Q++R K TPV+ LTA SVDD++ G ++GA+DYLVKPF F EL+AR+RA ++ Sbjct: 66 DVVQSIRQEKNRTPVLMLTAMGSVDDKLTGFEAGADDYLVKPFEFRELMARLRALTKRSS 125 Query: 120 ---ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + L+++ L +D R + I LT KEF LL L G ++ R IA ++ Sbjct: 126 DAGMQTNVLKVADLELDLNEKVARRGDKRIELTAKEFGLLDYLMRNRGRVVSRVDIAEKV 185 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 W I+FD+ TN +DV + LR K+D FP KLI T+ GMGY Sbjct: 186 WDIHFDTGTNVIDVYVNFLRKKIDKDFPTKLIHTVIGMGYMLKE 229 >UniRef50_Q1AZL3 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=Q1AZL3_RUBXD Length = 227 Score = 315 bits (809), Expect = 6e-85, Method: Composition-based stats. Identities = 94/225 (41%), Positives = 137/225 (60%), Gaps = 2/225 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED + +GLS GY + DG GL +AL++D +++LDIMLPG+DG Sbjct: 1 MRVLIVEDEPGIVRMLERGLSAQGYSCLSAEDGETGLRMALEEDVDVVLLDIMLPGLDGR 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++L+ LR + PV+ LTARD V+ +V LD+GA+DYL KPF+F ELLAR+RA +R+ Sbjct: 61 EVLRRLRLRRPGLPVLMLTARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALVRRAD 120 Query: 120 ALNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 ST L L++D +S V R + L+ +EF LL L +++ R I S +W Sbjct: 121 QPESTALRAGDLKLDLLSRRVWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILSAVWD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 FD +N VDV +R LR K+D P LI T+RG GY F ++ Sbjct: 181 YAFDPGSNVVDVYVRYLRRKLDRPGEPSLITTVRGAGYRFDPPRE 225 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 315 bits (808), Expect = 8e-85, Method: Composition-based stats. Identities = 89/219 (40%), Positives = 130/219 (59%), Gaps = 2/219 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 IL+IED + +V L+ GY + SDG GL A + L++LD MLPG+ G + Sbjct: 10 HILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISGLE 69 Query: 62 ILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-HH 119 I + LR+ + PV+ +TARD V DR GLD+GA+DY+VKPFS ELL+R+R LRQ Sbjct: 70 ICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLRQPRR 129 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 + + L L +D V+ V+R + LT KE+ LL L +++ R I +WG Sbjct: 130 SRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWGC 189 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +F D+N ++V IR LR K++ P ++LI T+RG+GY Sbjct: 190 DFTGDSNIIEVYIRYLRLKIEGPGEKRLIQTVRGVGYVL 228 >UniRef50_Q1IVX4 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IVX4_DEIGD Length = 225 Score = 315 bits (808), Expect = 8e-85, Method: Composition-based stats. Identities = 85/217 (39%), Positives = 130/217 (59%), Gaps = 2/217 (0%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L+IED + ++ L+ GY + DG GL + + L+ILD+MLP +DG ++ Sbjct: 7 VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDGLEV 66 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-HHAL 121 + +R TP+I LTA+D + D+V GLDSGA+DYL+KPFS ELLARVRA LR+ + A+ Sbjct: 67 ARRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPAV 126 Query: 122 NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINF 181 + ++ L M+ + R + L+ KEF+LL LLA G++ R I ++W + Sbjct: 127 TGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW-PEY 185 Query: 182 DSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +N VDV I LR K+++ +LI T+RG+GY Sbjct: 186 TGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVL 222 >UniRef50_C6QDD0 Two component transcriptional regulator, winged helix family n=5 Tax=Proteobacteria RepID=C6QDD0_9RHIZ Length = 262 Score = 315 bits (808), Expect = 9e-85, Method: Composition-based stats. Identities = 89/221 (40%), Positives = 139/221 (62%), Gaps = 3/221 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L+IED++ T +++ + L E G+ D DG GL LA Y ++I+D MLP +DG Sbjct: 37 MRVLVIEDDRETAQFLQKSLKENGHTADLAGDGEAGLALATDGAYDVLIVDRMLPLLDGL 96 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 ++++LR TPV+ L+A VDDRV+GL +G +DYL KP+++SELLARV A R+ Sbjct: 97 SVIKSLRAEGNRTPVLILSALGEVDDRVKGLRAGGDDYLTKPYAYSELLARVEALGRRTA 156 Query: 119 -HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + + + L +D +SH V+R I L +E++LL L AG+++ RT++ +W Sbjct: 157 PEEQQTRISVGDLVLDRLSHRVTRSGEHILLQPREYRLLEYLMQHAGQVVTRTMLLEHVW 216 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +FD TN +DV + RLRAK+D F + L+ T+RG GY+ Sbjct: 217 DYHFDPQTNVIDVHVSRLRAKIDKNFDKPLLHTVRGAGYTI 257 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 128/224 (57%), Gaps = 7/224 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+++D + + + L + +D DG + L + Y +I+LDIMLP +DG Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + Q +R P+I LTA+ D++ GLD GA+DY+ KPF+ E+ AR++A LR++ ++ Sbjct: 73 VCQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSSI 132 Query: 122 ------NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 ++ ++ +++D S S+ + I LT KEF LL +LA G++ R + Sbjct: 133 TQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLLKA 192 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 +WG ++ D TVDV +RRLR K++ +P K + T G+GY F Sbjct: 193 VWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYF 236 >UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C5NUZ8_9BACL Length = 223 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 139/224 (62%), Gaps = 3/224 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL++ED + +T+ L Y +D+ DG + L DY LII DIM+P +DG+ Sbjct: 1 MKILVVEDERDLNRIITKHLKRNNYSVDSCFDGEEALDFVGYSDYDLIITDIMMPNVDGY 60 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + ++ LR TPVI LTA+D+++D++ GLDSGA+DY+VKPF F EL AR+R +R+++ Sbjct: 61 EFIKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRRNY 120 Query: 120 ALN-STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L + ++I + +D V+R+ +I LT KE+++L L I+ R I + +W Sbjct: 121 GLATNVIQIDDIVLDISKKQVTRNGENIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 ++D +N VDV I+ +R K+D+ + +I T RG+GY FV K Sbjct: 181 YDYDGASNIVDVIIKNIRKKLDNGTDKTIIYTKRGLGY-FVKEK 223 >UniRef50_B9XE94 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobiales RepID=B9XE94_9BACT Length = 224 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 91/223 (40%), Positives = 137/223 (61%), Gaps = 2/223 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL++ED ++T ++ + L + +D DG + L LA + I+LDIMLPG DG Sbjct: 1 MRILVVEDEKKTASFIRKALQAESFAVDVSHDGTEALLLASNTPFDAIVLDIMLPGRDGL 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +L+ LR K TPV+ L+AR V++RV GL++GA+DYL KPF+ +EL+ARVR+ R+ + Sbjct: 61 SVLRQLRQQKNQTPVLLLSARGEVNERVEGLNAGADDYLPKPFALAELIARVRSIGRRSN 120 Query: 120 ALNSTL-EISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 S L +++ L +D+++ R S LT +E++LL L G I R I ++W Sbjct: 121 EPKSVLLQVADLTLDTITRQAQRGGTSFELTTREYRLLEFLMRTPGRICGRMAILEKVWD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 +FD TN VDV I+RLR KVD+ F KL+ T+R +GY Sbjct: 181 YDFDPGTNLVDVYIKRLREKVDEGFEPKLLHTVRNVGYVMKEQ 223 >UniRef50_B4WME0 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WME0_9SYNE Length = 236 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 87/232 (37%), Positives = 134/232 (57%), Gaps = 14/232 (6%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M +L ED + +V GL E G+V++ G A++++Y +I+LDIM+PG DG Sbjct: 1 MHVLFAEDEPKIASFVQIGLKEQGFVVEYCDHGDIAYEKAIQNEYDVILLDIMMPGKDGL 60 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 IL+ LR + TPVI LTARD +DDR++GL+ GA+DY+ KPF EL+AR+ A +R+ Sbjct: 61 FILKNLRQVGRNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRRSA 120 Query: 120 ALNSTL-EISGLRMDSVSHSVSRDNIS------------ITLTRKEFQLLWLLASRAGEI 166 L + ++D ++ +V+ + + + LT +EF LL L G + Sbjct: 121 GEQPNLVTVGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPGRV 180 Query: 167 IPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 RT + +WG +F+ TN VDV I+RLR K+D E+ I ++RG+GY F Sbjct: 181 FTRTQMLEHVWGYDFNPSTNVVDVCIQRLRKKIDMKGNERWIESVRGVGYRF 232 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 7/229 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+L+++D+++ + +T L + GY + DG + + A + +++LD+MLP +DGW Sbjct: 1 MKVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGW 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR---- 116 + + +R P+I LTARD DR+ GL+ GA+DY++KPFS E+LAR+RA R Sbjct: 61 GVCKEIRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQP 120 Query: 117 --QHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 + L++ +D S S++ + LT E++LL L + G++ R + Sbjct: 121 ASRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLIE 180 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFVAVK 222 ++ F+ TVD I+ LR K+ P I TI G+GY V + Sbjct: 181 KVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLVGEQ 229 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 79/233 (33%), Positives = 129/233 (55%), Gaps = 13/233 (5%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D+ E ++ L + + V DG + + + LI+LD+MLPG+DG++ Sbjct: 6 KILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDGYE 65 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + + +R P+I L+A+ + D+V GL+ GA+DY++KPF EL+ARV+A LR+ Sbjct: 66 VCREVRKTSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRVVPS 125 Query: 122 NST------------LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPR 169 ST + L ++ ++SV+ SI + KE +L + LAS ++ R Sbjct: 126 QSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQVFTR 185 Query: 170 TVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 + IWG + DT TVDV I+RLR K+ D +L +T+ G+GY F K Sbjct: 186 EQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHISWRL-STVWGIGYKFEVKK 237 >UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZDC3_BREBN Length = 231 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 87/217 (40%), Positives = 123/217 (56%), Gaps = 1/217 (0%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +LL+ED ++ L G+ D DG GL AL +Y LI+LD+MLP + G ++ Sbjct: 13 LLLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIEYDLILLDVMLPELSGIEL 72 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR-QHHAL 121 + +R K P+I +TAR V D V GLDSGANDYL KPF+ EL AR+R LR + Sbjct: 73 CRRIRETKDVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLRQRESKA 132 Query: 122 NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINF 181 N + + LR+ + V D I LT +EF LL+ + + + R I + +WG +F Sbjct: 133 NQEIVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWGFDF 192 Query: 182 DSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +TN VDV IR LR K++ KLI T+RG+GY+ Sbjct: 193 MGNTNIVDVYIRYLRNKIESDPSVKLIHTVRGIGYTL 229 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 313 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 130/228 (57%), Gaps = 11/228 (4%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+++D R + + L + I S+G++ LA++++YA I+LD+MLP MDG Q+ Sbjct: 5 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 64 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA-- 120 LR KQTP+I LTA+ +RV G +SGA+DY+VKPFS E++ RV+A LR+ + Sbjct: 65 ATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSTT 124 Query: 121 -------LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 +E L +D+ +H V DN + LT KE++LL LA ++ R + Sbjct: 125 VEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQLL 184 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVDDPFPE--KLIATIRGMGYSFV 219 E+W F D TVD ++RLR K++ E +I T+ G+GY F Sbjct: 185 KEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFE 232 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 126/225 (56%), Gaps = 9/225 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KILL+ED+ QE VT L GY + +G L L K+ L++LD+MLP +DG Sbjct: 3 KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62 Query: 62 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR-- 116 + + +R P+I L+ARD V DRV GL+ GA+DY+ KPFS ELLAR++A+LR Sbjct: 63 VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLREE 122 Query: 117 QHHALNSTL--EISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 + ++ L L + S+ V+ +TLT KEF+LL + R ++ R + Sbjct: 123 RRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYLLQ 182 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 ++WG DT TVDV I LR+K+ P +I ++RG+GY Sbjct: 183 KVWGYTVSGDTRTVDVHISNLRSKLKSVSP--IIESVRGVGYRLA 225 >UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacteria RepID=A0RG02_BACAH Length = 236 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 94/220 (42%), Positives = 137/220 (62%), Gaps = 2/220 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED Q Q + + L+ Y +DA +G D L Y LI+LDIM+PG++G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 72 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-H 118 Q+LQ LR T PV+ LTA+D++DDRV+GLD GA+DYLVKPF+F ELLAR+R +R+ Sbjct: 73 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 ++ EI+ L +D H V+R + ITL+ KEF +L + ++ R I +W Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +++ +N +DV +R LR KVD F KLI T+RG GY Sbjct: 193 YDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGYVL 232 >UniRef50_C7PP48 Two component transcriptional regulator, winged helix family n=20 Tax=Bacteria RepID=C7PP48_CHIPD Length = 235 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 90/235 (38%), Positives = 139/235 (59%), Gaps = 13/235 (5%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+LLIED ++ + L+EAGY + DG+ GL +A ++++ LIILD+MLPGM+G Sbjct: 1 MKLLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMATENNFQLIILDVMLPGMNGI 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 + + LR + TP++ LTA S ++ V GLDSGA+DYLVKPF +ELLAR+R+ LR++ Sbjct: 61 AVCKALRQQQLTTPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRRNN 120 Query: 119 -----------HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEII 167 + + L+++ L +D + S SR +I LT E++LL + ++ Sbjct: 121 DTAAAATPAVTQSNGNVLKVADLELDLNTKSASRYGQTIVLTATEYRLLEYMMRNPKRVL 180 Query: 168 PRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 R I +WG++F+ +T VDV + LR KV+ LI T+ GMGY + Sbjct: 181 SRMEILENVWGVDFNMNTKVVDVYVNYLRKKVNRKDQPALIQTVVGMGYMLKEEE 235 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 85/244 (34%), Positives = 132/244 (54%), Gaps = 23/244 (9%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +ILL+ED + V L + GY ++ V+ G + ++DY LIILD+MLPG+DG + Sbjct: 3 RILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDGLE 62 Query: 62 ILQTLRTAK--QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR--- 116 + + +R PVI LTA+ +++ GL+ GA+DY+ KPFS ELLARV+AQLR Sbjct: 63 VCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGRT 122 Query: 117 -----------------QHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLL 159 Q + L + + +N + LT KEF+LL ++ Sbjct: 123 KELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNIM 182 Query: 160 ASRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSF 218 + +G+++ R + +IWG +F DT TVDV IR LR K+ + P L+ T+RG+GY Sbjct: 183 VTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGYRL 242 Query: 219 VAVK 222 ++ Sbjct: 243 KEME 246 >UniRef50_B1ZVS5 Two component transcriptional regulator, winged helix family n=3 Tax=Chlamydiae/Verrucomicrobia group RepID=B1ZVS5_OPITP Length = 228 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 134/225 (59%), Gaps = 5/225 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED+ + +V +GL + GY +D DG GL LA Y ++DIMLP +DG Sbjct: 6 MRVLVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALATSTAYDAAVVDIMLPELDGL 65 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +++ LR + PV+ L+AR SV+DRV+GL +G +DYL KPF+F+EL AR++A +R+ Sbjct: 66 SLVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRAS 125 Query: 120 ALNS--TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 L + +D VS +V+ + L +EF LL L AG + + +I +W Sbjct: 126 RSPEATRLSAGDVTLDLVSRTVTVGGQPVELQPREFSLLEYLLRHAGRPVTKVMILEHVW 185 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 +FD TN VDV + RLR+K+D + I T+RG+GY F A + Sbjct: 186 DYSFDPQTNVVDVLMSRLRSKIDP--DKTRIETLRGVGYVFKAGR 228 >UniRef50_C4XS15 OmpR family two-component response regulator n=2 Tax=Desulfovibrio RepID=C4XS15_DESMR Length = 223 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 92/223 (41%), Positives = 148/223 (66%), Gaps = 3/223 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED+++ ++ GL ++G+ +D ++G DGL+LA + Y + I+D+MLPG+DG Sbjct: 1 MRILLVEDDEKIASFILGGLRQSGFAVDHAANGPDGLHLAATEPYCVAIIDVMLPGLDGL 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 Q+++ LR K TP+I L+A+ SV+DRVRGL++G +DYL KPFSF+ELLARV+A +R+ Sbjct: 61 QVIEELRRRKIMTPIIILSAKRSVEDRVRGLETGGDDYLSKPFSFAELLARVQALIRRST 120 Query: 120 ALNST--LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + + L + L M+ ++ VSR ++ L +EF LL G+++ +T+I +W Sbjct: 121 SASEPTRLTVGELSMNLLTREVSRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 +FD TN VDV + RLR K+D + K++ T+RG+GY Sbjct: 181 DYHFDPQTNLVDVLVCRLRNKIDRDYDRKMLHTLRGVGYVLKE 223 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 81/220 (36%), Positives = 117/220 (53%), Gaps = 3/220 (1%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+++D + L AGY + + G +GL +AL ++ LI+LD+MLPGMDG +I Sbjct: 5 ILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGMEI 64 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 LR ++ LTAR DRV GL GA+DYL KPFS EL+ARV A LR+ Sbjct: 65 TARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRGKP 124 Query: 123 ---STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 S + + + +D + + LT EF LL LA ++ R + ++WG Sbjct: 125 VKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKVWGA 184 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 +F VDV + ++R K++ E LI T RG+GY FV Sbjct: 185 DFYGTDRVVDVYVSQVRRKIEALTGENLIRTARGVGYRFV 224 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 80/232 (34%), Positives = 124/232 (53%), Gaps = 15/232 (6%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK---------DDYALIILDI 52 +IL++ED ++ V L + G+ +D +DGR L ++ L++LD+ Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 53 MLPGMDGWQILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARV 111 MLP ++G + LR P++ L+A+D+ DRV GL+ GA+DYL KPF EL+AR Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 112 RAQLRQHHALNS----TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEII 167 RA LR+ + L GL++ V D+ +TL+ KEF+LL L + Sbjct: 145 RALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRVW 204 Query: 168 PRTVIASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 R + +IWGI+F D+ T+DV IR LR K++ +P + T+RG GY Sbjct: 205 SRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 131/232 (56%), Gaps = 11/232 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++LL++D + + L++ G+V + V+DGR L LA ++ Y I+LDIMLP +DG + Sbjct: 11 RVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIE 70 Query: 62 ILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + + LR +TP++ ++A+ D+V L+ GA+DY+ KPFS ELLARV+A LR+ A Sbjct: 71 VCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 130 Query: 121 L---------NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTV 171 +S LR+ H V +D + LT KE++LL L + R Sbjct: 131 EISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 190 Query: 172 IASEIWGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFVAVK 222 + IWG +F +T VDV I +LR K++D P + I TIRG GY F +K Sbjct: 191 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELK 242 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 118/228 (51%), Gaps = 9/228 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL++ED + +E + L Y + +G +G + L LIILD+M+P DGW+ Sbjct: 3 KILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGWE 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH--- 118 + +R P+I LTA+ DR+ GL GA+DYL KPFS EL+ RV+ LR+ Sbjct: 63 LCGEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGNQV 122 Query: 119 -----HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 +L+ +E L++ + V + LT KEF++L+++A ++ R+ + Sbjct: 123 AIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQLL 182 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVDDPF-PEKLIATIRGMGYSFVA 220 IW + +NTV V + RLR K++ I T+ G+GY F Sbjct: 183 ELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEP 230 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 81/220 (36%), Positives = 127/220 (57%), Gaps = 3/220 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL+ +D+ +T + + L+ G+ + SDG++ L LAL L+ILD+M+P +DG+ Sbjct: 6 RILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGFA 65 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + +R A P++ LTAR D+V G GA+DY+ KPF +EL+ RV A LR+ L Sbjct: 66 VCGRIRAASAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRMPTL 125 Query: 122 NS--TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 TL L ++ + +V + + LT +EF LLWL+AS G R + + +W Sbjct: 126 PESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESLLARVWHG 185 Query: 180 NFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSF 218 + +D +TV V IRRLR K++D P + I T+ G+GY F Sbjct: 186 DAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKF 225 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 117/222 (52%), Gaps = 5/222 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +L++ED + L + GY + DG D L A + L+++D MLP + G + Sbjct: 4 HVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSGIE 63 Query: 62 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ- 117 + + LR P+I LTAR DRVRGLD+GA+DY+VKPFS +EL AR+RA LR+ Sbjct: 64 VCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLRRI 123 Query: 118 -HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 +E + MD V+H V R + I L EF+LL L G + R + + Sbjct: 124 RPGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLDAV 183 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 WG + + TVDV + RLR +++ I T+R GY+F Sbjct: 184 WGSDVYVEARTVDVHVGRLRKALNNKEERDPIRTVRSAGYAF 225 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 82/229 (35%), Positives = 124/229 (54%), Gaps = 10/229 (4%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M IL+++D Q + + L G+ I +G+D + L ILD+MLP +DG+ Sbjct: 3 MNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGF 62 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + Q +R PVI LTA++ D++ GL GA+DY+ KPF EL+ARV+AQLR+ Sbjct: 63 TLCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFTK 122 Query: 121 LNST--------LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 NS + SGL +D +H + + I+LT KEF +LW+L S G ++ + Sbjct: 123 YNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEEL 182 Query: 173 ASEIWGINFDSDT-NTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 219 E+WG + +++ NTV V IR LR K+ K I T+ G+GY Sbjct: 183 FHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIE 231 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 86/222 (38%), Positives = 125/222 (56%), Gaps = 6/222 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 ILL+ED+ E ++ AG+ + SDG GL +A + LIILD+MLPG+DG+ + Sbjct: 4 ILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGFSV 63 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR-----Q 117 + + P++ LTA R+ GL+ GA DY+VKPFS ELLARVRA LR + Sbjct: 64 CRAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNERQR 123 Query: 118 HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 ++ L + +++D S V + I L+ KEF LL L AG + R ++ +W Sbjct: 124 QTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLERVW 183 Query: 178 GINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 G +F T+DV +R LR K++ DP LI T+RG+GY F Sbjct: 184 GSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCF 225 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 84/223 (37%), Positives = 124/223 (55%), Gaps = 7/223 (3%) Query: 4 LLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQIL 63 L++ED+ E V L + +D DG+ GL +A+ Y LIILD+MLP +DGW+I Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 64 QTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ--- 117 + LR + TP+I LTA++ D+V GL GA+DYL KPF E LARV A LR+ Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 118 HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 ++ + TL L + S+ + ++ LT KEF+LL +LA AG + R + ++W Sbjct: 129 YNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQVW 188 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSFV 219 G + T T+D I+RLR K+ P + T+ G+GY Sbjct: 189 GYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLE 231 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 132/220 (60%), Gaps = 3/220 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+I+D++ + +GL+ GY + + G++GL L L+D+ LIILDIM+P +DG + Sbjct: 4 KILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGLE 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ---H 118 + + LR P++ +T DS+ DRV GL++GA+DYLVKPF+F EL+ARV+A LR+ Sbjct: 64 VCKRLRKDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDHK 123 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + L S L +D + R + +I + EF LL +++ R ++ +WG Sbjct: 124 KKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMDRVWG 183 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +F ++N ++V + LR+K++ +LI T+RG GY Sbjct: 184 FDFRGESNVLEVYVGYLRSKLEAQNEPRLIHTVRGAGYVL 223 >UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=B9KBQ0_THENN Length = 233 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 80/218 (36%), Positives = 132/218 (60%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++LL+ED + + + + L + + +D DG +G+Y+AL +D+ ++ILD++LP DGW Sbjct: 11 MRVLLVEDEKDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEDFDVVILDVLLPVHDGW 70 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-H 118 +IL+ +R TPV+ LTA V+ RV+GL+ GA+DYL KPF EL+ARV+A +R+ Sbjct: 71 EILKAMREKGINTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVKALIRRKA 130 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 N L L +D+ + V R I LT+KE+Q+L L ++ + + +W Sbjct: 131 ENKNVKLVCGDLILDTATRKVFRGGKEIDLTKKEYQILEYLMMNKNRVVTKEELQEHLWS 190 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 + ++T+ I+ LR K+D F +K+I T+RG+GY Sbjct: 191 FDDTVFSDTLRSHIKNLRKKIDRGFKKKIIHTVRGIGY 228 >UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepID=ARLR_STAAN Length = 214 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 87/215 (40%), Positives = 131/215 (60%), Gaps = 6/215 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL++ED Q ++ L+ Y +D DG+DGL AL Y LIILD+MLP ++G + Sbjct: 3 QILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLE 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 I + +R + TP+I +TA+ D+V GLD GA+DY+VKPF ELLAR+RA LR+ Sbjct: 63 ICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-QPQ 121 Query: 122 NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINF 181 ++++G + V+ + I LT+ E+ LL+LLA ++ R I + +WG N Sbjct: 122 KDIIDVNGTLL-----KVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGYNS 176 Query: 182 DSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 + +TN VDV IR LR K+ +K+I T+RG+GY Sbjct: 177 EVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGY 211 >UniRef50_A6X2C4 Two component transcriptional regulator, winged helix family n=59 Tax=cellular organisms RepID=A6X2C4_OCHA4 Length = 255 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 88/225 (39%), Positives = 135/225 (60%), Gaps = 3/225 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL+IED++ ++ + +EAG+ D DG G LA Y ++++D MLP DG Sbjct: 21 MKILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYTLAENGSYDVLVVDRMLPKRDGL 80 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 ++ LR +TPV+ L+A VDDRV GL +G +DYL KP++FSELLARV R+ Sbjct: 81 SVVAGLRARGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 140 Query: 119 -HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 ++ + L +D ++H+ R ++ ITL +EF+LL L AG+++ RT++ +W Sbjct: 141 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 200 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 +FD TN +DV I RLR+K++ F L+ T+RG GY A + Sbjct: 201 DYHFDPQTNVIDVHISRLRSKIEKGFDGPLLHTVRGAGYMLKAGR 245 >UniRef50_A6WIX6 Two component transcriptional regulator, winged helix family n=3 Tax=Bacteria RepID=A6WIX6_SHEB8 Length = 227 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 133/224 (59%), Gaps = 6/224 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M +LL+ED Q+ +++ +GL + + +DG G A + + +IILDIMLPG DG Sbjct: 1 MNVLLVEDEQKIADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGRDGL 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 IL++LR TP+I LTAR+ + DRV+GLD GA+DYL KPF EL AR++A LR+H Sbjct: 61 DILRSLRQQGVDTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHG 120 Query: 120 ALNS-TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 +E+ L++D ++ S++ S+ LT +EF LL L +++ R + +WG Sbjct: 121 GTQQHVVEVGALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVWG 180 Query: 179 INFDSDTNTVDVAIRRLRAK---VDDPFP-EKLIATIRGMGYSF 218 +FD TN VDV I+R+R+K ++ I +IRG GY Sbjct: 181 YDFDPCTNVVDVCIKRIRSKMASLEKAGKMVGAIESIRGTGYRL 224 >UniRef50_A0LPJ2 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A0LPJ2_SYNFM Length = 263 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 93/223 (41%), Positives = 134/223 (60%), Gaps = 3/223 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED+++ +++ + L+EAG+ ID +G G LALK+ Y II+D++LP MDG Sbjct: 32 MRVLVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESYDAIIIDVILPVMDGL 91 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +ILQ LR TPV+ L+A+ SV DRV GL+ G +DYL KPF +ELLARV + +R+ Sbjct: 92 EILQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRRSK 151 Query: 120 ALNST--LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 T L+ L +D VS V R + L +EF LL L G ++ R I +W Sbjct: 152 VNQETVQLKAGDLWLDLVSRRVFRGDEEFRLLPQEFALLEYLMRNKGRVVTRAEILENVW 211 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 G NF TN V+V I RLR K++ P +L+ T R GY+ V Sbjct: 212 GYNFVPATNVVEVHICRLREKLERPNKPRLLQTFRKAGYALVE 254 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 134/224 (59%), Gaps = 9/224 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+++++D + + + L + GY + DG D + L +++ +++LDIMLPG DG + Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + + +R + P+I LTA+DS D+V GL+ GA+DY+ KPFS EL+ARV+A LR+H++ Sbjct: 64 VCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQ 123 Query: 122 N--------STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 + + I + + ++S+ + I LT +EF+L L+ G+++ R + Sbjct: 124 PAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLL 183 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGY 216 +WG ++ D TVDV IRRLR K+ DDP + I T RG+GY Sbjct: 184 QTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 309 bits (794), Expect = 3e-83, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 132/233 (56%), Gaps = 11/233 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D+ E V+ L+ GY + D + L + + + I+DIMLPGMDG++ Sbjct: 29 KILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGFE 88 Query: 62 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ- 117 +++ LR + TPV+ L+A+ D+V GL+ GA+DY+ KPFS E++AR++A R+ Sbjct: 89 LVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRRI 148 Query: 118 ------HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTV 171 + GL +D + V + ++LT EF+LL LA G++ R V Sbjct: 149 QLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRDV 208 Query: 172 IASEIWGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFVAVKK 223 + ++WG ++ DT TVDV IRRLR K+ +DP K I T+RG GY F K Sbjct: 209 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGK 261 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 87/232 (37%), Positives = 126/232 (54%), Gaps = 12/232 (5%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLA-LKDDYALIILDIMLPGMDGW 60 ++L++ED+ ++ V LS G + V DG L L + L++LD+MLPGMDG Sbjct: 3 RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGI 62 Query: 61 QILQTLRTAKQ----TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR 116 + + LR + PV+ LTARD V GL+ GA+DY+ KPFS +L +RVRAQLR Sbjct: 63 SVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLR 122 Query: 117 QHH------ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRT 170 + LE GL +D + V+ + LT +EF++L LLAS G + R Sbjct: 123 RQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSRE 182 Query: 171 VIASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAV 221 I +WG F + + DV I+ LR K++ DP + I T+RGMGY F + Sbjct: 183 QIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFAEL 234 >UniRef50_Q1IUY4 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUY4_ACIBL Length = 232 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 98/218 (44%), Positives = 137/218 (62%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL+ ED +R E + GL+E G+ + +G D L +A+ ++ ++LD+MLPGMDG+ Sbjct: 1 MRILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVMLPGMDGF 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++ + LR +Q P++ LTARD+ D +RGLD+GA+DY+ KPFSFSELLAR+RA R+ Sbjct: 61 EVARRLRHKGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRRTG 120 Query: 120 AL-NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 +STL L +DS SH V R + I LTR EF LL L AG + R + +WG Sbjct: 121 PHRSSTLVCEDLTLDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGNVWG 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 + + NT+D IR LR KVD KLI T+RG GY Sbjct: 181 YDRAIENNTLDAFIRLLRQKVDTQGHPKLIQTVRGFGY 218 >UniRef50_B2J1E6 Multi-component transcriptional regulator, winged helix family n=2 Tax=Nostoc punctiforme PCC 73102 RepID=B2J1E6_NOSP7 Length = 787 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 121/224 (54%), Gaps = 2/224 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILLIED++ + Q L++ Y ++ DG+ G A +Y LI+ D++LP +DG Sbjct: 1 MRILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNYDLILTDVVLPKLDGI 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + Q LR+ TP++ +TA+D DR+RGLD+GA+DYL+KP + EL ARVRA LR+ Sbjct: 61 TLCQRLRSNGCSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRRGD 120 Query: 120 AL-NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 LE+ LR+D V+ DN + LT KE+ LL +L + R I +W Sbjct: 121 TPRPPVLEVGALRLDPSICEVTYDNQVLDLTPKEYSLLEILLRNPLRVFSRGDIIEHLWT 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 + TV I+ LR K+ I + G+GY + K Sbjct: 181 FDDPPQEETVKSHIKGLRHKLKVVGAVDWIENVYGLGYRLKSQK 224 Score = 104 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 3/134 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 + +L+++D+ + L G I + D + L+ILD+ +P + G Sbjct: 500 VNVLVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQSTAPDLLILDVEMPHISGI 559 Query: 61 QILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 ++ Q +R ++ P++ LTA ++ + +G +DY+VKP +ELLAR+ +L + Sbjct: 560 ELCQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARITHRLER 619 Query: 118 HHALNSTLEISGLR 131 L S L Sbjct: 620 SRLLQSLSTKDPLT 633 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 308 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 122/224 (54%), Gaps = 9/224 (4%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 I++++D + ++ + L GY + +G L L K+ LIILDIM+P MDG + Sbjct: 6 IIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNMDGIEA 65 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 +R K P+I L+A+ D++ GL +GA+DY+ KPF+ EL+ARV++QLR++ N Sbjct: 66 CTKIREEKNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRRYKKFN 125 Query: 123 --------STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 +EI L +++ +H V + LT +EF +L LLA G + I Sbjct: 126 VQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFSIEKIYE 185 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYS 217 +W F NTV V IR+LR K+++ P K + T+ G+GY Sbjct: 186 RVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYK 229 >UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=Acinetobacter RepID=B7H0F7_ACIB3 Length = 223 Score = 308 bits (791), Expect = 8e-83, Method: Composition-based stats. Identities = 107/219 (48%), Positives = 148/219 (67%), Gaps = 1/219 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL+IED + ++ +GL E+GY + V G GL + +D Y L+ILD+MLP ++GW Sbjct: 1 MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH- 119 +LQ LR + PVI LTA+D V DRV+GL+ GA+DYL KPFS+ ELLAR+++ LR+ Sbjct: 61 SVLQVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQY 120 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 + L IS L+MD V H V R+ I L++ EF LL L +I+ R I SE+W I Sbjct: 121 LQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWNI 180 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 NFD+DTN +DVA+RRLR+K+D+ + KLI TIRG+GY Sbjct: 181 NFDTDTNFIDVAVRRLRSKIDEGYEPKLIHTIRGLGYKI 219 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 125/227 (55%), Gaps = 10/227 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+L+IED+ V LS+ G D DG G+ AL ++Y +IILD+MLP +DG + Sbjct: 5 KVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGLE 64 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + Q LR P++ LT+R DD+V L++GA+DY+ KPFS EL ARV A +R++ Sbjct: 65 VCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRYRP 124 Query: 121 LNS--------TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 T GL +D+ +H V+ + I +T KEF LL L G RT + Sbjct: 125 EKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRTEL 184 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSF 218 +WG ++ +TV+ I RLR K+++ P K I T+ G+GY F Sbjct: 185 LDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKF 231 >UniRef50_D1BPS5 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BPS5_VEIPT Length = 224 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 125/221 (56%), Gaps = 2/221 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKILL+ED + + L +D +G+ + Y +I++DIM+P +DG Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 L +R T PV+ LTA+DS+ D+V L++GA+DYLVKPF EL AR+ A R++ Sbjct: 61 SALAQMRNDGNTTPVLLLTAKDSLQDKVTSLNTGADDYLVKPFDLEELTARIYALARRNA 120 Query: 120 A-LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + + + L ++ +V RD +ITLT KEF LL+ LAS ++ R I +W Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 +++S +N +DV I+ LR K+D KLI T+RG+GY Sbjct: 181 YDYESYSNLIDVYIKNLRKKIDTDENVKLIQTVRGVGYVLK 221 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 84/230 (36%), Positives = 129/230 (56%), Gaps = 12/230 (5%) Query: 1 MK---ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGM 57 MK IL+ +D + + L + GY + +DG + +++ L++LDIM+P M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 58 DGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 DG+++ + +R P+I L+A+ S D+V GL GA+DY+ KPF+ EL+ARV AQLR+ Sbjct: 61 DGYEVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRR 120 Query: 118 HHALN--------STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPR 169 LN S LE+ G+ +D +V I LT KEF +L+LLAS ++ Sbjct: 121 FLTLNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNV 180 Query: 170 TVIASEIWGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSF 218 I ++W ++ NTV V IR LR K+ +D KLI T+ G+GY+F Sbjct: 181 ENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230 >UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax=Actinobacteria (class) RepID=TCRA1_MYCTU Length = 253 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 2/219 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL++ED + + + L+E G+ +D V+DGR + DY ++LD+MLPG+DG++ Sbjct: 24 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83 Query: 62 ILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH- 119 + LR + TPV+ LTAR +V DR+ GLD GA+DYL KPF+ EL AR+RA R+ Sbjct: 84 VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPI 143 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 TLE LR+D H V R + I L+ KEF LL L R G + R + W Sbjct: 144 PRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDA 203 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +++ +N VDV IR LR K+D PF + TIRG GY Sbjct: 204 AYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 128/223 (57%), Gaps = 7/223 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+++D+ E V + L AG+ +D +DG L +A L++LD+MLPG+DG + Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH--- 118 + + LR + PVI LTAR DR+ GL+ GA+DY+ KPFS EL RV++ LR+ Sbjct: 117 VFRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANET 176 Query: 119 --HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 A L L +D+ + + +R + + LT +EF LL L R G R + + Sbjct: 177 VPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEHV 236 Query: 177 WGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSF 218 WG ++ D +TV V IRRLR K+ DDP +++ T+ G+GY + Sbjct: 237 WGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRY 278 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 121/227 (53%), Gaps = 7/227 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D + L AGY + VSDG + LI+LD+MLP MDG Q Sbjct: 4 KILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDGIQ 63 Query: 62 ILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ--- 117 + + LR P++ LTA V D++ GLD+GA+DY+ KPFS EL++R++A R+ Sbjct: 64 VCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQT 123 Query: 118 --HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 A ++T +I L + + V D +I LT KEF+LL L G+++ R + Sbjct: 124 LPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLLHG 183 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFP-EKLIATIRGMGYSFVAV 221 +W +F DT VDV I LR K++ + I T+R +GY A Sbjct: 184 VWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKLHAP 230 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 121/226 (53%), Gaps = 9/226 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+L+ +D+ +E + + + A +DGR+ L + K+ ++ILD+M+P +DG+ Sbjct: 33 MKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGF 92 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + + +R TP+I LTA+D DRV GL+ GA+DY+ KPFS E++AR+RA +R+ Sbjct: 93 EACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQP 152 Query: 121 LNS--------TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 T L +D V ++ KEF LL L G + R + Sbjct: 153 KPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSREQL 212 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 ++WG ++ D T+DV I+++R ++D P I T+ G+GY F Sbjct: 213 LEQVWGFDYFGDVRTIDVHIKKIRQRLDKL-PYDCIQTVWGIGYKF 257 >UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QL69_DESAH Length = 232 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 91/221 (41%), Positives = 132/221 (59%), Gaps = 5/221 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M IL+++D+ + + + L Y I+ +G L + Y LI+LDIMLP MDG Sbjct: 6 MNILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPLMDGL 65 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +L+ +R A TPV+ LTAR V+DRV+GLD GA+DYL KPFS +EL+AR+RA LR+ Sbjct: 66 SVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRRDG 125 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 ++ L L ++++S +V+ DN I+LT KEF +L L G + R +A +WG Sbjct: 126 KRDTILTAGPLSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNMAEHVWGN 185 Query: 180 NFDSD--TNTVDVAIRRLRAKVDDPFP--EKLIATIRGMGY 216 FD +N VDV I+ LR K+ P +I TIRG+G+ Sbjct: 186 EFDPFSMSNFVDVHIKNLRKKISPPGDKYPPIIRTIRGIGF 226 >UniRef50_C0Z5X8 Two-component response regulator n=143 Tax=Firmicutes RepID=C0Z5X8_BREBN Length = 251 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 89/219 (40%), Positives = 133/219 (60%), Gaps = 4/219 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++LLIED ++ LS + I DG GL LAL++++ +I+LD+MLPG+DG Sbjct: 29 RVLLIEDEINMARFIELELSYESFAITVAHDGHKGLKLALQEEWDVILLDVMLPGLDGIA 88 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + Q +R+ K+TP+I LTARDS+ DRV GLDSGA+DY+ KPF+ ELLAR+R R+ Sbjct: 89 VCQKIRSVKKTPIIMLTARDSITDRVFGLDSGADDYIPKPFAIEELLARIRVVFRRQEEQ 148 Query: 122 NST----LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + L GL + V+++N + LT++E+ LL ++PR V+ +W Sbjct: 149 ENVPRTMLAHRGLVVQIEGRIVTKNNQPVELTKREYDLLVTFMKNINRVLPRDVLLDTVW 208 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 G +TN VDV +R LR K+D P + I+T+RG+GY Sbjct: 209 GFEAAVETNVVDVYVRYLRNKIDFPNEDSYISTVRGIGY 247 >UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepID=A5MZ62_CLOK5 Length = 228 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 99/221 (44%), Positives = 135/221 (61%), Gaps = 4/221 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL++ED + +V L GY++D DGR GL ALK Y LIILD+MLP ++G + Sbjct: 5 KILIVEDEIKIARFVQLELEHEGYMVDQTGDGRVGLEKALKGGYDLIILDVMLPSLNGME 64 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH-- 119 +L+ LR + PVI LTA+D + D+V GLD GA DY+ KPF+ ELLAR+R + Sbjct: 65 VLRRLRQISEIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKSNN 124 Query: 120 --ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 +N+ + L+MD H V+ +N I LT+KEF LL L + R I ++W Sbjct: 125 NVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEKVW 184 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 G ++ DTN VDV IR LR+K+DD F +K I TIRG+GY F Sbjct: 185 GYDYLGDTNIVDVYIRYLRSKIDDKFNKKYIYTIRGLGYQF 225 >UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID=ARLR_STAS1 Length = 220 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 86/215 (40%), Positives = 132/215 (61%), Gaps = 1/215 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL++ED Q ++ L Y +D DG+ GL AL + Y LI+LD+MLP ++G + Sbjct: 3 KILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLMLPNINGLE 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 I + +R + TP+I +TA+ D+V GLD GA+DY+VKPF ELLAR+RA LR+ Sbjct: 63 ICRQIRQNQTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLRR-QPQ 121 Query: 122 NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINF 181 + ++I G+ +D + V+ D + LT+ E+ LL+LL ++ R I +++WG + Sbjct: 122 KNLIDIKGIIIDKDAFKVTVDGQPLDLTKTEYDLLFLLVENRNHVLQREQIITDVWGYDT 181 Query: 182 DSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 + +TN VDV IR LR K+ +K I T+RG+GY Sbjct: 182 EVETNVVDVYIRYLRNKLKPFGKDKCIETVRGVGY 216 >UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID=MPRA_MYCUA Length = 232 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 135/224 (60%), Gaps = 7/224 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL+++D++ +E + + LS GY ++ DG + L + D ++LD+M+P +DG + Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLDGLE 63 Query: 62 ILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH- 119 + + LR+ P++ LTARDSV +RV GLD+GA+DYL KPF+ ELLAR+RA LR+ Sbjct: 64 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTKL 123 Query: 120 -----ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 A + + S L +D V+ V+R I+LTR EF LL +L + ++ R+ I Sbjct: 124 EDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRILE 183 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 E+WG +F + N ++V + LR K + +LI T+RG+GY Sbjct: 184 EVWGFDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVL 227 >UniRef50_D2QX61 Two component transcriptional regulator, winged helix family n=3 Tax=Planctomycetaceae RepID=D2QX61_9PLAN Length = 223 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 91/220 (41%), Positives = 136/220 (61%), Gaps = 2/220 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+L+IED+ + + +GLSEAG+ G+ GL A + ++LD+MLP G Sbjct: 1 MKLLVIEDDPVLGKALERGLSEAGHFCQWERTGKSGLEQASTQQFDALVLDVMLPDTTGM 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++++ +R TPV+ LTA SVDDRV GL+SGA+DYLVKPF+F ELLAR+ A R+ Sbjct: 61 EVVRKIRHDGIGTPVLMLTALGSVDDRVAGLNSGADDYLVKPFAFPELLARLDAISRRTK 120 Query: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 +S L++ L +D + V+R++ ++LT EF LL L AG+++ R ++ +W Sbjct: 121 DRPSSQLKVGPLVLDLTNRKVTRNDSELSLTPTEFSLLEFLMRYAGQVVTRKMLCEHLWE 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +++ TN V+V I RLR K+D F E LI T+RG GY Sbjct: 181 SDWEGVTNVVEVHINRLRGKIDRGFSEPLIQTVRGRGYVL 220 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 116/220 (52%), Gaps = 5/220 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L+++D + + V L A + +G + L + + +I++D+M+P MDG+ + Sbjct: 6 VLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDGFTL 65 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ---HH 119 +R P++ LTAR D+V+GL G +DY+VKPFS EL+AR+ A +R+ + Sbjct: 66 CARIREQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAYHNK 125 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 N L L +D V+ D + LT KEF LL LA G++ R + +++WG Sbjct: 126 QKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLLAQVWGY 185 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 ++ + TVD I+ LR K+ I T+ G+GY F Sbjct: 186 DYTGNARTVDTHIKTLRMKLKQAS--DFIQTVWGIGYKFE 223 >UniRef50_A5FEG3 Two-component transcriptional regulator, winged helix family n=4 Tax=Bacteroidetes RepID=A5FEG3_FLAJ1 Length = 224 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 91/224 (40%), Positives = 132/224 (58%), Gaps = 4/224 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+L++ED + +G +E + DG+ L + ++ +++LD+MLP ++G Sbjct: 1 MKLLIVEDEPNLLSILRKGFAENNNEVSVALDGKTALEMIDNYNFDVVVLDVMLPDINGI 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +I + LR +K P++ LTA + ++ V GL+SGA+DYLVKPF F EL ARV A R+ H Sbjct: 61 EICRRLRASKNFVPILLLTALGTSENIVTGLNSGADDYLVKPFKFGELDARVNALHRRAH 120 Query: 120 ALNS---TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + I L ++ + +V RD SI LT KEF+LL+ L AG I+ R I + Sbjct: 121 QETDKIDVITIGDLEINGRAKTVKRDGESIILTAKEFKLLYYLGKNAGRIVSRDQILDNV 180 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 W INFD +TN VDV I LR KVD PF KLI T++G+GY Sbjct: 181 WDINFDMNTNVVDVYITYLRKKVDKPFKTKLIHTMKGLGYVIKP 224 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 124/223 (55%), Gaps = 6/223 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL+ +D ++ ++ + L + GY S+G + + ++ + L++LD+M+P +DG Sbjct: 7 RILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDGLT 66 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 +R P+I LTAR DR+ GL GA+DY+ KPFS ELLAR+ A LR+ H+ Sbjct: 67 ACMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTHSF 126 Query: 122 N----STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + +T ++ L +D +VS ++ LTRKEF LL+L + ++ R + +IW Sbjct: 127 SKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLLDQIW 186 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 G + + TVD I+ LR K+ + I T+ G+GY F A Sbjct: 187 GTEYHGNLRTVDTHIKTLRLKLGEAGG--YIQTVWGIGYKFEA 227 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 305 bits (783), Expect = 6e-82, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 124/226 (54%), Gaps = 5/226 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+L+++D+Q E V G+ + AV DG L +++ ++ILDIMLPG DG Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + + LR + P+I LTA+ DRV GL+ GA+DY+ KPFS EL+AR++A LR+ A Sbjct: 66 LCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQAA 125 Query: 122 NS----TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + L+ GL + + V D +T +EF LL+ LA + R + +W Sbjct: 126 DPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAVW 185 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 G ++ D TVDV IRRLR K+ P + + T+ G+GY F K Sbjct: 186 GYDYFGDQRTVDVHIRRLRTKL-ASLPHEYLQTVWGVGYKFTPPVK 230 >UniRef50_D1B9J7 Two component transcriptional regulator, winged helix family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9J7_THEAS Length = 226 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 88/219 (40%), Positives = 132/219 (60%), Gaps = 2/219 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L+IEDN+ + + +G E G+ +D DGR+GL L Y +ILDIMLP MDG+ Sbjct: 1 MRLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKYDCVILDIMLPEMDGF 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +++ +R PVI LTA+DSV+DRV GL+ GA+DYL KPF F EL+ARV A +R+ Sbjct: 61 EVMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRRSG 120 Query: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 S L+ L +D V+ +I + L R+EF +L LL ++ R I +++W Sbjct: 121 DQRRSILKCGPLTLDPVARECRVGDIKVPLRRREFDILELLMRYENQVFSRDKIIAQVWQ 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 +D +N VDV I+ LR K+ + ++ T+RG+GY Sbjct: 181 KEYDGTSNVVDVHIKYLRDKLRPFNLDMMVVTVRGVGYK 219 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 128/224 (57%), Gaps = 4/224 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 +K+L+IED+ E + + +AGY + SDG +GL L + IILDIMLP ++GW Sbjct: 5 IKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPKLNGW 64 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-- 117 ++ +T+R + P+I LT + D ++GL+ GA+DY+VKPF +EL+ARV+ LR+ Sbjct: 65 EVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLRRTI 124 Query: 118 -HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + L+ + + + V +N + + KE +L + LA +++ R + + Sbjct: 125 LSESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQQLLDRV 184 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 WG F+ D TVDV I+R+R K+ + + I TIRG+GY F Sbjct: 185 WGYEFNGDPRTVDVHIKRIRDKLAEHKAKWSIVTIRGVGYRFEE 228 >UniRef50_C7PAJ7 Two component transcriptional regulator, winged helix family n=3 Tax=Sphingobacteriales RepID=C7PAJ7_CHIPD Length = 266 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 132/225 (58%), Gaps = 6/225 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL++ED + V +GL E G+ +D DGR G LA ++Y L+ILD+ LP +G++ Sbjct: 41 RILVVEDEIKVANTVKKGLEENGFEVDVAYDGRMGKSLAASNNYDLVILDLNLPHANGYE 100 Query: 62 ILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + + +R P+I LTA +DD+++ + GA+DYLVKPF F EL+AR+R L++ + Sbjct: 101 VCEVIRRKNNAIPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFLKRAGS 160 Query: 121 LNS-----TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 + I L +D V+R I LT KE+QLL LA G++I + VIA + Sbjct: 161 EVQENNQYKIVIGDLEIDREKKEVTRGGKKIALTAKEYQLLEFLALHKGKVISKLVIAEK 220 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 +W I+FD+ TN ++V + LR K+D F KL+ T GMGY Sbjct: 221 VWDIDFDTGTNVIEVYMNFLRKKIDKDFDNKLLHTKTGMGYYLAE 265 >UniRef50_UPI00016B25CE two component transcriptional regulator, winged helix family protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25CE Length = 224 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 126/224 (56%), Gaps = 4/224 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPG--MD 58 M+IL++ED ++ +++ L GY ID + +G +A Y +I+D M+PG D Sbjct: 1 MRILIVEDEKKLARAISRTLKNEGYAIDIEYNSSEGYAMASTQPYDALIIDRMMPGDFSD 60 Query: 59 GWQILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 G +L+ LR TP I LTA ++ GLD+GA+DYL KPF+ ELLAR+RA LR+ Sbjct: 61 GLDMLKKLRKDGISTPAIVLTALGETSQKITGLDAGADDYLAKPFAIDELLARLRAILRR 120 Query: 118 HHALNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 T L++ L +D+ + +V DN I LT KE+ LL L +G+ + + I + Sbjct: 121 PKKAQPTILKVGKLHIDTTNRTVEFDNKKIDLTAKEYALLQYLMKSSGQTLSKEQIMEHV 180 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 W + D NTV+ I+ LR K+D+ + K I T+RG+GY Sbjct: 181 WNFDADILPNTVEAYIKALRKKIDEKYKVKYIKTVRGIGYRLEE 224 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 127/228 (55%), Gaps = 8/228 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 +KIL++ED++ + L + GY + DG + D++ L+ILDIMLP + G+ Sbjct: 5 IKILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVGGY 64 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH-- 118 ++LQ +R TPV+ L+A+ D++ GL GA+DYL KPF EL ARV+AQLR++ Sbjct: 65 EVLQKIREKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRYLN 124 Query: 119 -----HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 + + M+ ++ V + S+TLT KEF++L L ++ + + Sbjct: 125 FSWETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFTKNQLF 184 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVA 220 IWG N+ +D NTV V IRRLR K++ DP I TI G+GY V Sbjct: 185 KSIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKLVE 232 >UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=Bacteria RepID=A7ZEI3_CAMC1 Length = 219 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 88/218 (40%), Positives = 127/218 (58%), Gaps = 5/218 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL++ED +T+ L + GY +D+ +G + + Y LI+LD+M+P MDG Sbjct: 1 MKILVVEDEIDLNSVITRHLKKNGYSVDSACNGEEAMDFTAVAHYDLIVLDLMMPVMDGL 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 LQ R AK TPV+ LTA+D VDD V+GLD+GA+DYLVKPF F ELLARVR +R++ Sbjct: 61 TFLQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRRNS 120 Query: 120 A-LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + S + L++D SV I LT KE+++L L G I+ R I +W Sbjct: 121 GNVASEICAGELKIDLSKKSVEFSGEQIELTGKEYEILEFLMLNKGRILTRDQIKEHVWD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 ++ +N +DV I+ +R K+ + I T RG+GY Sbjct: 181 FDYTGGSNVIDVLIKNIRKKLGECEA---IQTKRGLGY 215 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 127/225 (56%), Gaps = 7/225 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L++ED + + + L + G+ V DG L + +++LD+MLPGM G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ----- 117 + LR PVI +TARDS D+V GL+ GA+DY+ KP+S EL+AR+RA LR+ Sbjct: 64 CKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADND 123 Query: 118 -HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 A + LE +RMD H VS + ITL KEF LL L +G ++ R + + Sbjct: 124 DAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 183 Query: 177 WGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFVA 220 WG ++ DT T+DV ++RLR+K+ +DP + T+RG+GY Sbjct: 184 WGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLEG 228 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 304 bits (780), Expect = 1e-81, Method: Composition-based stats. Identities = 91/228 (39%), Positives = 129/228 (56%), Gaps = 11/228 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+L+++D ++ + LS GY + SDG + L L ++ ++ILDIM+P +DG+ Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + Q +R P+I LTA V DR+ GL+ GA+DY+VKPFS EL AR+RA LR+ + Sbjct: 76 VCQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTNKA 135 Query: 122 --------NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 + + + L +D + +DN I LT EF LL LL SR+G+ R I Sbjct: 136 AFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRADIL 195 Query: 174 SEIWGINFD--SDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 E+WG + DT VDV I RLRAK++ DP LI T RG GY F Sbjct: 196 QEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLF 243 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL++ED+ E + + L AG+ +DG + LAL+ L++LD MLPG+DG + Sbjct: 14 ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGVDGLAL 73 Query: 63 LQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH--H 119 + R + PV+ LTAR D RVR L GA+DYL KPFS EL+ARV+A LR+ Sbjct: 74 CERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRRAYAS 133 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 +GL +D + V I L +EF LL LA G + R + +WG Sbjct: 134 GYRDCSPKNGLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELLERVWGY 193 Query: 180 NFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAVKK 223 +F+ T+DV +R+LR K++ DP + T+ G+GY F + Sbjct: 194 DFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFAGPPR 238 >UniRef50_B7K2S9 Two component transcriptional regulator, winged helix family n=2 Tax=Cyanothece RepID=B7K2S9_CYAP8 Length = 635 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 127/226 (56%), Gaps = 3/226 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKILLIED+ T ++Q L++ Y +DAV++G GL LA Y +I+LDIMLP +DG Sbjct: 1 MKILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDGI 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + + LR TP++ LTA++ D V GL++GA+DYLVKPF ++ELLAR++A R+ Sbjct: 61 TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120 Query: 120 A-LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L L L ++ +H V+ + LT E+ LL L + R VI +IW Sbjct: 121 QVLPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIWT 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPF-PEKLIATIRGMGYSFVAVKK 223 ++ T+ I+ LR K+ + +I T+ G GY +++ Sbjct: 181 LDKVPGEETISSHIKALRQKLKAVGMTQNMIKTVYGFGYRLGELQE 226 Score = 81.7 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 3/110 (2%) Query: 5 LIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQ 64 LI+D+ E + L+ G+ + ++S+ + + + L+ILD+ +P G + Q Sbjct: 512 LIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLNLCQ 571 Query: 65 TLRTAK---QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARV 111 +R P++ L+ D + + L GA+ YL K + EL+ + Sbjct: 572 AVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTIAVEELIECI 621 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 129/231 (55%), Gaps = 9/231 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL++ED+ + + L + GY I+ G + + ++Y ++I+DIM+P MDG + Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ---- 117 ++ +R + P+I L+A+ D++ GL GA+DY+VKPFS EL+ARV+ +R+ Sbjct: 65 SMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIYY 124 Query: 118 ----HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 N E ++ D +++V++ +TLT KE ++L L + + I Sbjct: 125 NETKSIKENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQIY 184 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFVAVKK 223 +WG F SD NTV V +RRLR+K+ DDP KLI T+ G+GY ++ Sbjct: 185 DSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKLTGDRQ 235 >UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax=Proteobacteria RepID=B8H4H9_CAUCN Length = 242 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 101/233 (43%), Positives = 136/233 (58%), Gaps = 13/233 (5%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK--------DDYALIILDI 52 M IL++ED+ R +++ +GL GY + DG GL A D +I+LD+ Sbjct: 1 MHILVVEDDTRVADFLERGLKAEGYKVRVARDGVSGLEAARDLDAMLRELDQRGVILLDL 60 Query: 53 MLPGMDGWQILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARV 111 MLP M G ++ QTLR + TPV+ LTA +VDDRV GL +GA+DYLVKPFSF ELLAR+ Sbjct: 61 MLPKMTGMEVCQTLRASGVLTPVLMLTALGAVDDRVTGLRTGADDYLVKPFSFEELLARI 120 Query: 112 RAQLRQHH----ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEII 167 A LR+ N TL+ + +D + VSRD + LT +E LL L S G ++ Sbjct: 121 EALLRRSRDQRAPANRTLKAGNVELDRTTMRVSRDGEEVVLTARELALLELFLSSPGRVL 180 Query: 168 PRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 R I S +WG++ D TN VDV +RRLRAK+D P I T+RG+GY Sbjct: 181 SRERILSNVWGVDEDPLTNVVDVYVRRLRAKIDPPLASSFITTVRGLGYRLEP 233 >UniRef50_D2PLZ1 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=D2PLZ1_9ACTO Length = 236 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 84/220 (38%), Positives = 123/220 (55%), Gaps = 2/220 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL++ED +R + GL + G+ ++ DG GL+ + DY I+LD+MLPG+ G Sbjct: 1 MRILVVEDERRLARAIGHGLEDHGFTVELAHDGETGLWKGREQDYDAIVLDLMLPGLSGD 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++ + LR A TP++ LTAR + GL+ GA+DYL KPFS+ L+AR+ A LR+ Sbjct: 61 EVCRQLRAAGCWTPILILTARVGAEAEAGGLNLGADDYLRKPFSYQVLIARLNALLRRTA 120 Query: 120 ALNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L + L +D +V R I LTR+EF +L L AG + I +WG Sbjct: 121 PARPVNLVVGDLVLDPARRTVRRGTTPIELTRREFSVLEYLMRNAGSTRSKAEILDHVWG 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +FD + N V+V + LR K+D PF I T+RG GY Sbjct: 181 ADFDREPNVVEVYVGYLRRKIDQPFGTGSIRTVRGHGYLM 220 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 87/229 (37%), Positives = 133/229 (58%), Gaps = 13/229 (5%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+ ED+ E + L + GY + +DGR+ + L + L+ILDIM+P MDG+++ Sbjct: 8 ILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHMDGYEV 67 Query: 63 LQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 ++ +R + P+I L+A+ S D++ GL GA+DY+ KPF+ ELLARV AQLR+ L Sbjct: 68 VRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLRRFRQL 127 Query: 122 N----------STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTV 171 N S + GL +D +V+ N I LT KEF +L+LLAS ++ Sbjct: 128 NQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKVFSAEH 187 Query: 172 IASEIWGIN-FDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSF 218 I ++WG ++S NTV V IR LR K+ +D ++ I T+ G+GY+F Sbjct: 188 IFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAF 236 >UniRef50_B7K7W8 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7K7W8_CYAP7 Length = 799 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 80/221 (36%), Positives = 121/221 (54%), Gaps = 3/221 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+LL+ED+Q E + + L Y+++ +DG+ GL LA +Y LI+LD+MLP +DG Sbjct: 1 MKLLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEMFEYDLIMLDLMLPKLDGI 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 Q Q R TP++ +T +D +V+ LD+GA+DYLVKPF+ ELLARVRA LR+ Sbjct: 61 QFCQQRRKKGDLTPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRRGG 120 Query: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + L+ L ++ S V+ + I LT KE+ +L L I ++ + +W Sbjct: 121 LSSTPLLQWGPLNLNPSSCQVTYEGELIHLTAKEYGILELFLRNRNRIFSQSALIEHLWS 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPF-PEKLIATIRGMGYSF 218 + N V I+ LR K+ LI T+ G+GY Sbjct: 181 FDEAPTENAVRTQIKSLRQKLKKAGASPNLIETVYGLGYRL 221 Score = 104 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 3/113 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KI++++D+ + + L G+ I + D + + + L+ILD+ +P + G + Sbjct: 499 KIMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTTPDLLILDVEMPEISGIE 558 Query: 62 ILQTLRTA---KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARV 111 + Q +R P++ L+ G +GA+DY+ KP SEL+ R+ Sbjct: 559 LCQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKPIVDSELVTRI 611 >UniRef50_A6CDX9 Two component transcriptional regulator, winged helix family protein n=2 Tax=Bacteria RepID=A6CDX9_9PLAN Length = 231 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 91/220 (41%), Positives = 135/220 (61%), Gaps = 3/220 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL++ED R +++ +GLSE GY ++ DGR G L + + L+ILD LP DG Q Sbjct: 4 RILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVEDGIQ 63 Query: 62 ILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 +L+ R +T PV+ LTARD+V +RV GLD+GA+DYL KPF+F ELLARVRA LR+ Sbjct: 64 LLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRRPGQ 123 Query: 121 LNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 + LE + +R D + V+R + LT KEF LL G+++ RT I +W Sbjct: 124 ASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIYDTVWDD 183 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 ++D +NT++V ++ LR K++ ++I T+RG GY Sbjct: 184 SYDGLSNTLEVHVKELRHKLEACG-PRVIQTLRGRGYVLE 222 >UniRef50_C7IFX1 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=C7IFX1_9CLOT Length = 217 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 83/217 (38%), Positives = 125/217 (57%), Gaps = 6/217 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL++ED E V + L G+ ++V DG + Y LIILDIMLPG+DG+++ Sbjct: 4 ILIVEDEVAINELVKRNLQLVGHQCNSVFDGNAAVQEIQCRSYDLIILDIMLPGLDGFEV 63 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 ++ A +TP I L+A++S+ DR++G GA+DYL KPF ELLARV A LR+ Sbjct: 64 IEQ---ANKTPTIFLSAKNSMPDRIKGFSMGADDYLTKPFEMLELLARVEAVLRRTQRTA 120 Query: 123 STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFD 182 S E +++D SH V + S+ T KE++LL +L + + R + +WG +F+ Sbjct: 121 SCFEAGNVKIDFSSHQVFHNGQSVECTPKEYELLEVLVNNRNIALSRERLLELVWGYDFE 180 Query: 183 SDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 DT TVDV I++LR K++ E I T+ +GY Sbjct: 181 GDTRTVDVHIQKLRKKLE---WEDRIKTVYKLGYRLE 214 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 82/218 (37%), Positives = 131/218 (60%), Gaps = 2/218 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+++D+ E + L GY VSDG + + +++LD+MLPG +G Q Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH-A 120 I Q +RT P++ LTA+ D V+GL++GA+DY+ KPF EL+ARVRAQLR+ Sbjct: 77 ICQDIRTQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRRGETG 136 Query: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 L I +++D +H V+RD + I LT EF LL LA + ++ R ++ ++WG Sbjct: 137 QAENLSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLLEQVWGYR 196 Query: 181 FDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYS 217 +DT V+V ++RLRAK++ DP +++ T+RG+GY Sbjct: 197 HAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_C9NWS1 DNA-binding heavy metal response regulator n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NWS1_9VIBR Length = 226 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 98/225 (43%), Positives = 140/225 (62%), Gaps = 4/225 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKILLIED+ ++ G + G I ++G DGL+ A+ + Y +I+LDIMLP DG+ Sbjct: 1 MKILLIEDDTHIARFLINGFQQEGCTITHATNGVDGLHEAISESYDVIVLDIMLPQKDGF 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++L LR TPV+ L+A+ SVD+RV+GL SGA+DYLVKPF+F ELLAR ++ R+ Sbjct: 61 EVLAQLRGEGHATPVLILSAKHSVDERVKGLQSGADDYLVKPFAFPELLARCQSLARRGQ 120 Query: 120 ALNST---LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + L S L +D + HS+ R+ SI L ++EF L+ L+ +I +T I ++ Sbjct: 121 QNPAQSYQLSYSELSLDLLKHSLERNGASIQLNQREFMLIKLMLENPETVISKTAILEQV 180 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 WG FD TN VDV + RLR+KVD F LI T+RG+GY + Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFDTPLIHTLRGVGYVLKSQ 225 >UniRef50_Q8A9Y3 Two-component system response regulator n=8 Tax=Bacteroidales RepID=Q8A9Y3_BACTN Length = 245 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 86/222 (38%), Positives = 130/222 (58%), Gaps = 3/222 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KILL ED ++ +GL E G+ + DG G + ++ + L+ILDI++P ++G + Sbjct: 24 KILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMPKINGLE 83 Query: 62 ILQTLRT--AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 + R Q PVI LTA + +D V+GLD+GA+DYLVKPFSF EL AR++A LR++ Sbjct: 84 LCHLYRQMFGYQAPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 143 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + + L L +D + R + I LT KE++LL + G + R + ++W Sbjct: 144 ETVTNQLTCDNLVLDCNTRRAKRGDADIDLTVKEYRLLEYFMTHQGVALSRITLLKDVWD 203 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 NFD++TN VDV + LR K+D F +KLI T+ G+GY A Sbjct: 204 KNFDTNTNIVDVYVNYLRVKIDRDFDKKLIHTVVGLGYIMNA 245 >UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 Tax=Rhodothermaceae RepID=Q2RYR0_SALRD Length = 247 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 90/225 (40%), Positives = 134/225 (59%), Gaps = 3/225 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +LL+ED +V QGL+E GY + V GR GL A + L++LDI LP + G + Sbjct: 6 HLLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGIDLVLLDIRLPDLSGLE 65 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ--H 118 + + LR + + P++ LTA D+V+DRVRGL +GA+DYL KPF+F ELLAR+ A LR+ Sbjct: 66 VCERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRRVDR 125 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + +E L +D + + + D + LT EF LL L +R G+ + R I E+WG Sbjct: 126 PSEPGRVEDGPLVLDPAARTCTFDGEEVDLTPTEFDLLAFLMARHGQALSRDTIHQEVWG 185 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 +FD TN +DV + +R K+D+ E I T+RG+GY + A + Sbjct: 186 HDFDRGTNLIDVYVNYVRRKLDEVGCEAPIETVRGIGYRYTACSE 230 >UniRef50_UPI00017468BB two component transcriptional regulator, winged helix family protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017468BB Length = 227 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 86/220 (39%), Positives = 132/220 (60%), Gaps = 5/220 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED+ + + L E Y +DA DG +G AL+++Y +I+LD+MLPG+ GW Sbjct: 12 MRVLVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEYDVIVLDVMLPGLSGW 71 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + LQ LR K +PV+ LTARD+V DRV+GL+ GA+DYL KPF ELLAR+RA +R+ Sbjct: 72 EFLQKLRPTKTSPVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRAAG 131 Query: 121 LN-STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 L I L +D+ + V + +T +E+ L+ LA GE++ RT + ++ Sbjct: 132 QPQPVLTIRDLSIDTAARKVLWKGEEVPVTAREYTLIEYLALHQGEVVSRTTLYEHLFDE 191 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 + + +N +DV + LR K+ +LI T RG GYS Sbjct: 192 DDSTLSNLLDVHVSNLRKKL----APELITTRRGHGYSIE 227 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 302 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 126/226 (55%), Gaps = 5/226 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +ILLIED+ R + + L++ G+ + G GL L ++++D+MLP +DG++ Sbjct: 20 RILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGFE 79 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA- 120 + LR + P+I +TAR D V GL++GA+DY+ KPF EL AR+RA LR+ + Sbjct: 80 CCRRLRRSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSRSA 139 Query: 121 ---LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 ++I L + + V R+ ++ LTR EF+LL LAS + R + +W Sbjct: 140 GGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQLLERVW 199 Query: 178 GINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFVAVK 222 G ++ D VDV +RRLR K+ +DP +++ T+RG+GY Sbjct: 200 GYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKIQPAP 245 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 302 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 128/224 (57%), Gaps = 6/224 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L++ED + + + L + G+ V+DG L + +++LD+MLPGM G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ----- 117 + LR PVI +TARDS D+V GL+ GA+DY+ KP+S EL+AR+RA LR+ Sbjct: 64 CKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDD 123 Query: 118 HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + LE +RMD H VS + +ITL KEF LL L +G ++ R + +W Sbjct: 124 SEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVW 183 Query: 178 GINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVA 220 G ++ DT T+DV ++RLR+K++ DP + T+RG+GY Sbjct: 184 GADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLEG 227 >UniRef50_C6Q063 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q063_9CLOT Length = 367 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 82/220 (37%), Positives = 135/220 (61%), Gaps = 2/220 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 + IL+++D + E++ GL + G+++ DG + + LA + + ++IILDIMLPG++G+ Sbjct: 148 IHILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIMLPGINGY 207 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH-H 119 ++ ++ +I LTA+D +DDRV+GLD GA+DY++KPFSF ELLAR+ A+LR Sbjct: 208 EVCSEIKKWVNASIIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLRNSLP 267 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 LN + I ++ +H + N + L+ E+ LL L G ++ + I ++WG Sbjct: 268 ELNDVMSIGNFYLNDKAHEIYFKNNLLELSPTEYNLLKYLLFNNGLVLSKPTILEKVWGF 327 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 +F+ D N V+V IR LR K+ D +I T+RG+GY V Sbjct: 328 DFNGDVNIVEVYIRYLRDKIGDN-EHSIIRTVRGVGYKVV 366 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 87/232 (37%), Positives = 137/232 (59%), Gaps = 10/232 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +ILL+ED+ + + L++AG+ +D V DG DGL AL + Y LI+LDIMLPG DG+ Sbjct: 8 RILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGFD 67 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ--- 117 I + LR K TP++ +TA+ D+V GL+ GA+DY+ KPFS E+LARV+A R+ Sbjct: 68 ICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVEV 127 Query: 118 -----HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 A ++ +E+ + ++ V+ + ++ LT KEF+LL L A G R + Sbjct: 128 DQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDEL 187 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAVKK 223 E+WG + ++TV+ I RLR K++ DP + + T+ G+GY F ++ Sbjct: 188 LDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFAEREE 239 >UniRef50_Q6AQP4 Probable two-component system response regulator (Pho family) n=1 Tax=Desulfotalea psychrophila RepID=Q6AQP4_DESPS Length = 224 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 103/221 (46%), Positives = 145/221 (65%), Gaps = 3/221 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+LLIED+ + + +GL EAG+ +D+ +GR+GL ALK Y+ I+DIMLP DG Sbjct: 1 MKLLLIEDDLTIADLIQKGLEEAGFAVDSCHNGREGLSHALKGAYSAAIIDIMLPERDGL 60 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-- 117 I++ +R K+TPV+ L+A+ SVDDR++GL G +DY++KPFSF ELL RV+A +R+ Sbjct: 61 SIIEEMRAAGKETPVLILSAKQSVDDRIQGLQRGGDDYMIKPFSFGELLVRVQALIRRDQ 120 Query: 118 HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 H+ + L I L MD + V RD I L KE+ LL +A AG + +T I +++ Sbjct: 121 KHSPQTRLSIGPLEMDLLRQQVCRDGGQIELPAKEYALLLYMAENAGTALSKTSILEKVY 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 G NFD TN VDV + RLRAK+D F ++LI TIRG+GY Sbjct: 181 GYNFDPQTNVVDVLVCRLRAKIDKGFGQQLIQTIRGVGYVL 221 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 82/233 (35%), Positives = 125/233 (53%), Gaps = 13/233 (5%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLAL---KDDYALIILDIMLPGMDG 59 I+++ED + V + L E G+ ++ + DG L + + LI+LD+MLP +DG Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 60 WQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR--- 116 +I + +R +K TP++ LTAR + DRV GL+ GA+DYL KPFS EL ARV A LR Sbjct: 64 LEICRRVRQSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRVE 123 Query: 117 ------QHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRT 170 + + ++ L +D +S V+ + LT KEF LL LLA+ G + R Sbjct: 124 MMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSRD 183 Query: 171 VIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSFVAVK 222 + +WG ++ TVD I RLR K+ P + I T+ G+GY + + Sbjct: 184 YLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKYERPR 236 >UniRef50_B4WPA6 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WPA6_9SYNE Length = 685 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 122/222 (54%), Gaps = 2/222 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILLIED++ + + L + Y +D DGR GL A Y L+++D+ LP +DG Sbjct: 1 MRILLIEDDEVLTSALVESLQQQRYTVDTADDGRFGLEYAESASYDLLLVDVGLPRLDGI 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + + LR TP++ +TA+D+ D+++RGLD+GA+DYL KP +EL AR+RA LR+ Sbjct: 61 SLCRELRDRNYTTPILLMTAKDAADEKIRGLDAGADDYLTKPLDINELHARLRALLRRGE 120 Query: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + S LE+ L +D VS V+ + + LT KE+ LL L + R+ I +W Sbjct: 121 VSPTSILEMGQLHLDPVSCEVTYADAPLKLTPKEYSLLELFLRNPSRVFSRSHIIEHLWT 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 + ++V ++ LR ++ + I + GMGY Sbjct: 181 FDDPPLEDSVKAHVKGLRRRLKQAGADGWIENVYGMGYKLSP 222 Score = 85.2 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 9/124 (7%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L ++D+ ++ L G+ I ++D K D L+ILDI +PG DG ++ Sbjct: 403 LLAVDDDPILLGTLSPLLEPWGFSITTLADSTKFWQTLTKVDPDLLILDIEMPGPDGIEL 462 Query: 63 LQTLRTA-------KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQL 115 +R + P++ LTAR++ V + +DY+VKP EL+ R+ +L Sbjct: 463 CHAVRNDPRDGGHWQSLPILFLTARENAAAEVFAAGA--DDYVVKPIVGPELITRINNRL 520 Query: 116 RQHH 119 + Sbjct: 521 ERAR 524 >UniRef50_B2IXN9 Multi-component transcriptional regulator, winged helix family n=4 Tax=Nostocaceae RepID=B2IXN9_NOSP7 Length = 624 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 127/225 (56%), Gaps = 4/225 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED+ + V L++ YV+D +DG G L +Y LI+LD++LP +DG Sbjct: 1 MRILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVILPKLDGI 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-H 118 + + LR Q ++ LTA+D+ D+V GLD+GA+DY+VKPF F EL AR+RA LR+ + Sbjct: 61 SLCRQLRQEGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRRGN 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 AL LE L +D + V+ +I++ LT KEF LL L I R I ++W Sbjct: 121 TALPPVLEWGSLLLDPSTCEVTYADIALNLTAKEFSLLDLFLRNNQRIFSRATIVDQLWS 180 Query: 179 INFD-SDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSFVAV 221 D + NT+ I+ LR K+ I T+ GMGY A+ Sbjct: 181 AEKDPPEENTIKSHIKSLRQKLKTAGANYDFIETVYGMGYRLKAL 225 Score = 76.7 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 11/117 (9%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +I+++ED+ + + Q L G + + D + L+ILD +P ++G + Sbjct: 499 RIMVVEDDPQILTVIQQSLETLGITLKTLEDSCYFWDTLTEFSPDLLILDAEMPYINGIE 558 Query: 62 ILQTLRTA---KQTPVIC----LTARDSVDDRVRGLDSGANDYLVKPFSFSELLARV 111 + Q +R K PV+ L+A + +++ GA+D + KP S L+A + Sbjct: 559 LCQVVRNDPCWKLLPVVFVVDNLSA--DIVEQI--FAIGADDCVSKPIVSSTLIACI 611 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 115/223 (51%), Gaps = 6/223 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L+++D R +E + L+ + DG L L++LD+M+P +DGWQ Sbjct: 9 VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL- 121 LQ +R PVI LTAR V DRV+GL GA+DY+ KPF EL ARV+A LR+ Sbjct: 68 LQRIREESAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSAGQV 127 Query: 122 --NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 N + L + + + LT KEF LL LLA+ G++ R + IWG Sbjct: 128 EANVPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLDRIWGP 187 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 +F D TVD I+ LR K+ + LI T+ G+GY F V Sbjct: 188 DFQGDARTVDAHIKNLRDKLGEGAG--LILTVWGVGYRFAEVP 228 >UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator, Winged helix family n=2 Tax=Nostocaceae RepID=UPI0001C16F99 Length = 1329 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 119/225 (52%), Gaps = 3/225 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL++ED+ ++ L+ Y ++ +DG+ L +Y LI+LDI+LP +DG Sbjct: 1 MKILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVETYEYDLILLDIVLPKLDGI 60 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + + +R+ ++ P++ LT RDS D+ GLD+GA+DY+VKP EL+ARVRA LR+ Sbjct: 61 SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGG 120 Query: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 LE GLR+D S V+ ++LT KE+ LL LL + +I +W Sbjct: 121 VTSQPVLEWGGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLWS 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSFVAVK 222 + V I+ LR K+ L+ T+ G+GY + Sbjct: 181 YEDTPGEDAVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRLKPQE 225 Score = 94.8 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 7/122 (5%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 +KIL+++D+ +T E + L+ G I ++ K ++ILDI +PGM G Sbjct: 382 IKILVVDDDLKTLELLQVLLTPWGLEIVTLNYPEQFWSTWEKIHPDMLILDIEMPGMSGI 441 Query: 61 QILQTLR---TAKQTPVICLTARD--SVDDRVRGLDSGANDYLVKPFSFSELLARVRAQL 115 ++ + +R ++ P++ LT + ++V GA+D++ KP SEL+ R+ +L Sbjct: 442 ELCKMIRSHDQGREVPILFLTVHSNAEIVNQV--FSVGADDFVSKPIIISELVNRILNRL 499 Query: 116 RQ 117 + Sbjct: 500 ER 501 Score = 72.5 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L+ +D+ T++ + L + GY + V G + A+ +I+LD+++PGM+GW+ Sbjct: 1076 VLVCDDDPITRQELKNLLLQGGYRVLTVDSGDQAIAQAVIQHPDVILLDLVMPGMNGWET 1135 Query: 63 LQTLRTAKQT---PVIC 76 + L+ T P++ Sbjct: 1136 MAGLKKCSDTKDIPIVI 1152 Score = 44.3 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 29/108 (26%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK-------------DDYALI 48 KIL+IED+ + + GR+ ++L+ K + Sbjct: 1205 KILIIEDDHDLADLLATLFDRHDIETFIAKTGREAIHLSQKVNPDLLILDLILPEA---- 1260 Query: 49 ILDIMLPGMDGWQILQTLRTAKQ---TPVICLTARDSVDDRVRGLDSG 93 DG+ ++ L+ Q PV+ +A+D D L G Sbjct: 1261 ---------DGFTVVDWLKQHDQLFSIPVVVYSAKDLDDSERHRLKLG 1299 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 84/218 (38%), Positives = 125/218 (57%), Gaps = 5/218 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL+++D ++ + + L + GY + DG GL L + + L+ILD+MLP DGW Sbjct: 8 RILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGWS 67 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA- 120 IL+ ++ +TPVI LTARD +D V G + GA+DY+ KPF+ LLARV++ LR+ + Sbjct: 68 ILREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTNNM 127 Query: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 + S +EI L ++ SHSVS I L KE+ LL L + R + +E+WG + Sbjct: 128 VESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNEVWGYD 187 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 F D T+D I+ LR K+ I TIRG+GY Sbjct: 188 FLGDDRTIDTHIKNLRKKIGKNA----IKTIRGIGYKL 221 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 121/233 (51%), Gaps = 16/233 (6%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLA----------LKDDYALIILD 51 IL+IED +E V L E GY SDG + L L + + LIILD Sbjct: 23 NILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILD 82 Query: 52 IMLPGMDGWQILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLAR 110 +MLPG++G + + +R T P++ ++A+ S DRV GL+ GA+DYL KPF E+LAR Sbjct: 83 VMLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLAR 142 Query: 111 VRAQLRQHH----ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEI 166 RA LR+ L L L + + + L+ KE++LL L + Sbjct: 143 CRALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRRV 202 Query: 167 IPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 PR + ++WG +F D+ TVDV IR LR K++ DP + I T+RG GY F Sbjct: 203 WPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 91/224 (40%), Positives = 131/224 (58%), Gaps = 6/224 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 ILL++D Q ++V+ L +AGY +D +G L ++ Y L +LDIM+PGM+G+++ Sbjct: 8 ILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNGYEL 67 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH--- 119 + LRT PV+ L+ARDS D+V GL+ GA+DYL KPF EL+ARVRA LR+ Sbjct: 68 CRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRGQMDA 127 Query: 120 --ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 ++ G+ +D H N SI LT +EF+LL L AG++ R + E W Sbjct: 128 EPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASREDLLREAW 187 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDP-FPEKLIATIRGMGYSFVA 220 G + ++T TVD I+RLR K+ F +I T+RG GY F A Sbjct: 188 GWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRFRA 231 >UniRef50_A5VEY8 Two component transcriptional regulator, winged helix family n=7 Tax=Proteobacteria RepID=A5VEY8_SPHWW Length = 225 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 94/219 (42%), Positives = 139/219 (63%), Gaps = 3/219 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M +LLIED+ R + V +GL EAG++++ +DGR+GL A + + +I+LD MLP +DG Sbjct: 1 MHVLLIEDDPRVADHVGKGLREAGHIVETAADGREGLLRAAAESFDVIVLDRMLPQVDGL 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +ILQT+R TPV+ L+A VD+R+RGL +G +DYL KPF+ SEL+ARV A R+ Sbjct: 61 KILQTIRATGDATPVLILSALGDVDERIRGLRAGGDDYLPKPFALSELVARVEALGRRGP 120 Query: 120 ALNS--TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 A+ L L +D + +V+R I LT++EF++L L AG ++ R+++ +W Sbjct: 121 AIAEATELRSGDLAIDLLGRTVTRAGRRIDLTQREFRILEYLVRSAGRVVTRSMLLEHVW 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 NFD TN +D + RLR K+D F LI T+RG GY Sbjct: 181 DYNFDPQTNIIDQHVSRLRQKLDRGFDTPLIETVRGTGY 219 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 69/224 (30%), Positives = 108/224 (48%), Gaps = 5/224 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D + V L + GY + +GR+ L K+ LI+LD M+P M G + Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIE 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA- 120 +L+ +R Q P+I LTA+ D++ G + G +DY+VKPFS EL AR++ L++ A Sbjct: 64 VLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLEAK 123 Query: 121 ---LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 L L + V + LT EF+LL G+ R + Sbjct: 124 TINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLELLEYAI 183 Query: 178 GINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVA 220 G ++ T+D I LR K++ DP + I T+ G+GY Sbjct: 184 GEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLKP 227 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 129/224 (57%), Gaps = 5/224 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+L++ED + ++T L AGY + G D L L + L++LD+MLPG+DG + Sbjct: 7 KVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLE 66 Query: 62 ILQTLRTAKQTP-VICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH-- 118 + Q +R P +I LTA+ D++ GL+ GA+DY+VKPF+ EL+AR++A LR+ Sbjct: 67 VCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRDR 126 Query: 119 -HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 A + L +D+ ++ + ++N + LT E+ LL + G+ + R + + IW Sbjct: 127 YEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLNGIW 186 Query: 178 GINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFVA 220 G ++ DT T+DV IRRLR K++D P + I TI G GY + Sbjct: 187 GEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQP 230 >UniRef50_A6CWR0 Two-component system response regulator (Pho family) protein n=5 Tax=Vibrionales RepID=A6CWR0_9VIBR Length = 224 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 95/224 (42%), Positives = 139/224 (62%), Gaps = 4/224 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKILLIED+ +++ G + G + +DG DGL+ A+ D+ +IILDIMLP DG+ Sbjct: 1 MKILLIEDDSHIAKFLVNGFQQEGITVTHSTDGVDGLHEAVTADFDVIILDIMLPKKDGF 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++L LR TPVI L+A+ SV++RV+GL SGA+DYLVKPF+F ELLAR + +R+ Sbjct: 61 EVLAELRGQGHATPVIILSAKHSVEERVQGLQSGADDYLVKPFAFPELLARCQTLMRRGK 120 Query: 120 ALNST---LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + L L +D + H++ R+ +I + ++EF L+ LL ++ +T I + Sbjct: 121 PPSPQALELNYGPLNLDLLKHTLQREQQNIAINQREFMLMKLLLENPETVMSKTAILEHV 180 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 WG FD TN VDV + RLR+KVD F LI T+RG+GY + Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFATPLIHTLRGVGYVLKS 224 >UniRef50_C6VX71 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteroidetes RepID=C6VX71_DYAFD Length = 232 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 86/222 (38%), Positives = 127/222 (57%), Gaps = 6/222 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+LLIED + + L+ G+ I DG+ GL + L+ + +IILD+M+P ++G Sbjct: 1 MKLLLIEDEPNVISLIQRSLTANGHEITIAMDGQSGLQMVLQHQFDVIILDLMIPIINGM 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++ + R A+ TP++ LTA + ++ V GLDSGA+DY+ KPF +EL AR+R +R+ Sbjct: 61 EVCRRARNAQVTTPILMLTALGTTENIVSGLDSGADDYMTKPFKLAELEARLRTLIRRGK 120 Query: 120 AL-----NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 + L + L +D V+ +V R I LT EF+LL L S ++ R I Sbjct: 121 EPEKEKNDKVLTLGDLVLDKVTKTVKRGGQPIELTATEFRLLEYLLSNTNRVLNRMEILE 180 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +W INF+ TN VDV I LR K+D KLI T+ GMGY Sbjct: 181 NVWDINFNLGTNVVDVYINYLRKKIDKNHDIKLIHTVFGMGY 222 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 126/227 (55%), Gaps = 6/227 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+ +D+ R + V+ L + GY + DG + LA ++I+DIM+P +DG + Sbjct: 6 ILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKLDGLEA 65 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 Q ++ P+I L+A+D V D++ G G +DY KPFS +EL RV+A LR+ A+ Sbjct: 66 SQKIKMKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSKAVP 125 Query: 123 S-----TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 L+ ++ + V +TLT KEF +LWL+AS +I R + +IW Sbjct: 126 EKKGKDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIFSRLQLLEQIW 185 Query: 178 GINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAVKK 223 +F+ D +TV V IRRLR K++ D +LI T+ G+GY F A K+ Sbjct: 186 ESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFEAPKE 232 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 5/222 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL++ED +E V L + G+ D + + LI+LD MLPG G Q Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 ILQTLRTAK---QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ- 117 ++ L+ PV+ LTAR +DRVRGL++GA+DY+ KPFS EL+AR++A +R+ Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 118 -HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 A+ +E+ GL +D SH V + + EF+LL + + R + + + Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 WG N + TVDV IRRLR ++ ++++ T+RG GY F Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 >UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepID=A5EYW4_VIBC3 Length = 224 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 90/221 (40%), Positives = 129/221 (58%), Gaps = 3/221 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILLIED++R ++ +GL G+ I + DG+ GL + L+ILD MLP +DG Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + Q +R Q ++ L+A V++R++GL +GA+DYL KPF F ELLAR+ A R++ Sbjct: 61 TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 120 AL--NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 ++ L + L + + V R I LT KE +L L + G I R I + +W Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 GI+ D TN VDV +RRLR K+D PF + LI T RGMGY Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221 >UniRef50_B4WMF1 Response regulator receiver domain protein n=2 Tax=Cyanobacteria RepID=B4WMF1_9SYNE Length = 871 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 118/214 (55%), Gaps = 2/214 (0%) Query: 7 EDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTL 66 ED++ + Q L YV+D +DG +G +A Y LI++D MLP +DG Q+ Q L Sbjct: 2 EDDRALAGAIEQLLLSHHYVMDLATDGIEGRGMAEVFPYDLILMDWMLPKLDGMQLCQQL 61 Query: 67 R-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA-LNST 124 R TP+I LTARD+ DRV GLD+GA+DYLVKPF F ELLAR+RA LR+ ++ Sbjct: 62 RNEGNSTPIILLTARDASTDRVAGLDAGADDYLVKPFEFEELLARIRALLRRSEGIVSPV 121 Query: 125 LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFDSD 184 L+ L++D S V+ ++ I LT KE+ LL L I + ++W Sbjct: 122 LQWGDLQLDPCSSRVTCGDVPIALTPKEYALLELFLRNPERIFSLDSLLDKVWPFEDTPT 181 Query: 185 TNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +V I+ LR K+ +I+T+ G+GY Sbjct: 182 VASVRTHIKGLRQKLRQVGLSDVISTVYGLGYRL 215 Score = 101 bits (254), Expect = 1e-20, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 3/132 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L+++D+ + + L G+ I+ + D K + L++LDI +P + G+ + Sbjct: 571 LLVVDDDSSMLTLLQKLLQPWGFKIEILCDPSQFWQTLEKVEPDLLLLDIKMPQLSGFDL 630 Query: 63 LQTLRTA---KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 Q +R+ + P++ ++A GA+DY+ KP EL+ARV L + Sbjct: 631 CQVVRSDPRWHELPILFMSAHTDEKTIQEVFSVGADDYIRKPIVAPELVARVLGWLARSR 690 Query: 120 ALNSTLEISGLR 131 EI L Sbjct: 691 DRRLRTEIDSLT 702 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 129/224 (57%), Gaps = 4/224 (1%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L+IED+ E + + + GY+ DG GL + I LDIMLP +DGW++ Sbjct: 8 VLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLPKIDGWEL 67 Query: 63 LQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 Q +R K+ P+I LT + D+++GLD GA+DY+VKPF +EL+AR++A +R+ L Sbjct: 68 CQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAVMRRADLL 127 Query: 122 N---STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 N + + GL +D + + + IT+ KE LL+ LAS ++ R + +IWG Sbjct: 128 NDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVFTRQQLLDQIWG 187 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 F+ D T+DV I+R+R K+ + + I TIRG+GY F+ + Sbjct: 188 YAFEGDPRTIDVHIKRIREKLTEADAKWTIKTIRGVGYKFLEKE 231 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 127/228 (55%), Gaps = 8/228 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+++D +T L +A Y + +V +G D + + K +I+D+MLP +DG + Sbjct: 5 ILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDGIEA 64 Query: 63 LQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + +R Q P+I LTA+ S D++ GL+ GA+DY+ KPFS ELL+R++ LR+ Sbjct: 65 TKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTDRA 124 Query: 122 ------NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 + TL+ + +D V ++N I LT EF+LL L A +++ R I + Sbjct: 125 INLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQILEK 184 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAVK 222 +WG + T VD+ I LR K++ DP +LI TIRG GY FV+ K Sbjct: 185 VWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFVSKK 232 >UniRef50_B8HL49 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HL49_CYAP4 Length = 652 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 117/224 (52%), Gaps = 2/224 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKILLIED+ + + L Y++DAV+DGR G A Y LI++D+ LP DG Sbjct: 1 MKILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGLPQQDGI 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-H 118 + + LR Q P++ +TA+D+ DR+ GLD+GA+DYL KP +EL ARVRA LR+ Sbjct: 61 TLCRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRRGS 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L++ L++D S V+ S+ LT KE+ LL L G++ R + +W Sbjct: 121 ETKTPILQVGNLQLDPRSCQVTYAERSLNLTPKEYNLLELFLRHPGQVFSRGQLVEHLWT 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 + +V ++ LR K+ I I G+GY Sbjct: 181 FDDPPLEESVKAHVKGLRQKLKAAGAVDWIENIYGIGYRLNPPD 224 Score = 95.2 bits (237), Expect = 1e-18, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 7/136 (5%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 + +LL++D+ E + L G + +++ + + L+ILD+ +P G Sbjct: 380 VNVLLVDDDPIFLEQIVLLLQPWGIHLTGINNPLELWSVLPSTRPDLLILDVEMPQTSGI 439 Query: 61 QILQTLR---TAKQTPVICLTA-RD-SVDDRVRGLDSGANDYLVKPFSFSELLARVRAQL 115 ++ Q+LR + P+I LTA RD +V GA+D++ KP ELL R+ +L Sbjct: 440 ELCQSLRSDPEWQSLPIIFLTAHRDRETIQQV--FTVGADDFVTKPVVVPELLTRIINRL 497 Query: 116 RQHHALNSTLEISGLR 131 + + S L Sbjct: 498 ERTRLIQSLASKDPLT 513 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 125/223 (56%), Gaps = 3/223 (1%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 ILL+ED ++ ++ +++ L + G+ + +DG + L + LI+LD+MLPG+ GW++ Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 ++ +R TP+I LTAR D++ GL+ GA+DY+ KPFS EL R++A LR+ Sbjct: 65 MKKIRQKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSRPHE 124 Query: 123 ST--LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 + IS L ++ + + LT EF++L LLA G++ R I ++G Sbjct: 125 QVTNVSISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHILERVFGDI 184 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKL-IATIRGMGYSFVAVK 222 ++ T+D I LR K++ ++ I T+ G+GY VA + Sbjct: 185 YEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKLVAEE 227 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 82/222 (36%), Positives = 121/222 (54%), Gaps = 4/222 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +++IED E + GL+ G + S+GR L + + L+ILD+MLP +DG Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77 Query: 62 ILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + + LR + P+I LTAR V +RV+GL GA+DY+VKPFSF ELLARV A R+ Sbjct: 78 VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAGI 137 Query: 121 LNST--LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L+++GL ++ + V+ +I LT EF LL + R + S +WG Sbjct: 138 SRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVWG 197 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 + D+N V+V I LR K+ D KLI T+ G+GY+ Sbjct: 198 FTYVGDSNIVEVHISNLREKIGDH-ERKLIRTVYGVGYTLRP 238 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 124/232 (53%), Gaps = 15/232 (6%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+L+++D + L +A + + ++G D L + + Y +++LD+MLP M G + Sbjct: 3 KVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSGEE 62 Query: 62 ILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 +L+ +R TPVI LTA+D+ D+V GL+ GA+DY+ KPFS E++AR+ A LR++ Sbjct: 63 VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122 Query: 121 LNS-------------TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEII 167 +D + VS ++ ++ LT KEF+L+ L +++ Sbjct: 123 SEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182 Query: 168 PRTVIASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 R + +WG ++ + VD+ I LR K++ DP K + TIRG GY F Sbjct: 183 SRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEF 234 >UniRef50_C6VUR1 Two component transcriptional regulator, winged helix family n=3 Tax=Sphingobacteriales RepID=C6VUR1_DYAFD Length = 226 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 135/226 (59%), Gaps = 4/226 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL++ED++R ++T+GL+E GY ++ DG L + L ILD+MLP +DG+ Sbjct: 1 MKILVVEDDERIGSFLTKGLAEVGYFVEWAQDGAMARTLIQDGSWDLFILDVMLPDIDGF 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-- 117 Q+ Q +R TPV+ L+A DD+++ LD GA+DYL KP F ELL+R+ A R+ Sbjct: 61 QLTQLIRYKKIDTPVLILSALGEADDKIKALDLGADDYLTKPIHFPELLSRINALRRRYD 120 Query: 118 -HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 H++ ++ L + L ++ +H V R I L+ KEF+ L L +++ R+ I + Sbjct: 121 MHYSKDNVLVCADLEVNLDTHLVQRAGKEIVLSAKEFRFLVYLMENQNKVLTRSQILQVV 180 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 W N D+ TN VDV I LR K+D FP+KLI T++G GY + K Sbjct: 181 WSTNMDTYTNVVDVYISYLRNKIDVDFPDKLIRTVKGTGYMIASQK 226 >UniRef50_B4U9M6 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9M6_HYDS0 Length = 225 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 85/218 (38%), Positives = 133/218 (61%), Gaps = 2/218 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K L++ED++ E + +G G+ +D DG L A + Y +IILD+++P +DG + Sbjct: 4 KALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKIDGVK 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA- 120 + + LR + P+I LTA+ ++D++ GL++GA+DY+ KPFSF EL+ RV+ LR+++ Sbjct: 64 VCKQLRLQSEIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYNKV 123 Query: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 + + L MD V +I LT KEF+LL +LA + I R V+ +++WGI Sbjct: 124 QEEKIVLKDLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWGIA 183 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 D D+N VDV I+ +R K++D P KLI TIRG GY Sbjct: 184 SDYDSNIVDVYIKNIRNKLED-KPPKLILTIRGRGYML 220 >UniRef50_A5UWJ8 Two component transcriptional regulator, winged helix family n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UWJ8_ROSS1 Length = 231 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 88/221 (39%), Positives = 128/221 (57%), Gaps = 3/221 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++LLIED + +GL + GY +D +DG G LA ++Y LIILD+ LP +DG Sbjct: 1 MRLLLIEDEDDLAHALVRGLRQQGYAVDWAADGEQGCELASINEYDLIILDLNLPALDGL 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 + + LR ++ LTARD ++RV GLD+GA+DYL+KPF F ELLAR+RA LR+ Sbjct: 61 DVCRYLRANYPHLLILILTARDQPEERVIGLDTGADDYLIKPFHFGELLARIRALLRRDL 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L+ L++D + +V +N + LTRKEF +L L GE+I + ++ +W Sbjct: 121 RVRQPLLQYRDLKLDPATQTVWLNNQRLNLTRKEFAILSYLMRHQGEVITQEMLLEHVWD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSF 218 + TNTV V I LR K+ D + I T+ G+GY Sbjct: 181 GTVNPFTNTVRVHINALRRKLRDTIAPYRYIETVVGVGYRL 221 >UniRef50_A6TKQ5 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ5_ALKMQ Length = 236 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 126/230 (54%), Gaps = 9/230 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KILL+ED++ + + L + G+V+ DG LK+ Y L++LD+MLPG+DG+Q Sbjct: 5 KILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGLDGYQ 64 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ---- 117 + Q +R TP+I LTA+ ++++V+GL GA+DY+ KPF ELLAR+ A LR+ Sbjct: 65 VCQKIRETSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRRIEQD 124 Query: 118 ----HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 + + LE L D + + + I + R+E QLL L ++ R + Sbjct: 125 HEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVFKREELI 184 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKL-IATIRGMGYSFVAVK 222 IWG +F+ + +D+ I+RLR ++ + I T+ G+GY F K Sbjct: 185 EGIWGWDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKFEVEK 234 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 128/229 (55%), Gaps = 10/229 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+I+D + + + L G + +G++G+ A K+ LI+LDIM+P +DG++ Sbjct: 3 KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKA-KEMPDLIVLDIMMPDIDGYE 61 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ---- 117 + + +R P++ L+A+ S DR++G G +DY+VKPFS ELLAR+ A LR+ Sbjct: 62 VCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKRA 121 Query: 118 ----HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 + L + +D S V I LT+KEF +L LL+ G++ + I Sbjct: 122 ILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQIY 181 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSFVAV 221 ++WG + + DT TV I+ +RAK+++ P+ + I T+ G+GY + V Sbjct: 182 EKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKWEKV 230 >UniRef50_A4CE30 Probable two-component response regulator transcription regulator protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CE30_9GAMM Length = 227 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 95/227 (41%), Positives = 134/227 (59%), Gaps = 5/227 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED+ R ++ +GL GY I DG++GL LA + D+ LI+LDIMLP ++G Sbjct: 1 MRILLVEDDDRVASFLERGLRAEGYFIVRACDGKEGLELAQEGDFQLILLDIMLPSLNGL 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++ Q LR P+I LTA D D ++GL GA+DY+ KPF++ ELLAR+ A R+ Sbjct: 61 EVCQALRIKKNLVPIIMLTAMDESQDIIKGLRLGADDYVTKPFAYDELLARIEAVTRRTP 120 Query: 120 AL---NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + LE L D S+ VS DN I+LT KE +L LL + G+ + R I S + Sbjct: 121 NEIKNTNILEFGPLCFDRSSYIVSLDNEEISLTVKEMAILELLMTNTGKYLSRERILSNV 180 Query: 177 WGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAVK 222 WG+ D TN VDV I +LR K+ + E +I T RG+GY V+ Sbjct: 181 WGMEMDPMTNVVDVYIGKLRKKLTIESKGESMIETKRGIGYRLNLVE 227 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 85/231 (36%), Positives = 131/231 (56%), Gaps = 10/231 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+L+IED ++ L++ GY + G GL AL+ ++ LIILDIMLPG++G++ Sbjct: 4 KVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLNGFE 63 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 IL LR +TP+I LTAR++ ++ V+GL GA+DY+ KPF +ELLARV A LR+ Sbjct: 64 ILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQQ 123 Query: 121 LNST--------LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 +S + + L + + V + ++ L KEF++L L R G +I R + Sbjct: 124 DDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRDDL 183 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 + +WG ++ TVDV + LR K++ I +IRG+GY V KK Sbjct: 184 MNVVWGFDYIGGQRTVDVHVSSLRKKLE-LGQSVQIESIRGVGYKLVMSKK 233 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 119/233 (51%), Gaps = 12/233 (5%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 IL++ED+Q + + + L + +DG GL + + LI+LD+MLP +DG + Sbjct: 13 NILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLE 72 Query: 62 ILQTLRTA---KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ- 117 + +R K ++ LTA+ DR+ GL +GA+DYLVKPFS EL+ARVRA LR+ Sbjct: 73 VCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQ 132 Query: 118 ---HHALNSTLEISGLRMDSVSHSVSR----DNISITLTRKEFQLLWLLASRAGEIIPRT 170 + + ++D H SR + LT EF LL S G + RT Sbjct: 133 LRQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRT 192 Query: 171 VIASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAVK 222 + ++WG +F D VD IRRLR K++ DP I T+ G+GY F Sbjct: 193 QLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFEDPD 245 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 75/221 (33%), Positives = 121/221 (54%), Gaps = 4/221 (1%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+++D ++ + L + G+ + DGR LY+A + L++LD+M+P M G++ Sbjct: 4 ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGGYEF 63 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL- 121 L+ +TPVI LTA+ D++ GL+ GA+DY+ KPF+ EL+AR+RA LR+ Sbjct: 64 LRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQTP 123 Query: 122 --NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 L + + +D +V + LT EF +L L + G++ R + + G Sbjct: 124 LEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLLDRVSGD 183 Query: 180 NFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFV 219 F+ T+DV IR LRAK++ DP + I T+ GMGY F Sbjct: 184 AFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRFA 224 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L++ED+ E + L AG++++ DG L A + LI+LD MLPG+DG + Sbjct: 41 RVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGSE 100 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA- 120 + + +R+ P+I LTA S D+R+ GL++GA+DY+ KPFS EL+ RV++ LR+ Sbjct: 101 VCRRIRSRGDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIGD 160 Query: 121 --LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 +T + +D+ +HS+ R + LT +EF LL L G+ R + +WG Sbjct: 161 LTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLKSVWG 220 Query: 179 INFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 F D +TV V +RRLR K++ DP ++AT+ G+GY Sbjct: 221 WEF-GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRL 260 >UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=Corynebacterium RepID=B1VIL1_CORU7 Length = 256 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 72/222 (32%), Positives = 118/222 (53%), Gaps = 6/222 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+L+++D + + L G+ ++ +G+ L +A ILD+M+PGMDG+ Sbjct: 31 KVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGMDGFT 90 Query: 62 ILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ--- 117 +L LR P + LTA+D V+DR+ GL GA+DY+ KPFS E++ R+R LR+ Sbjct: 91 LLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVAK 150 Query: 118 -HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 +S + + +D H V++ + L+ EFQLL L A ++ ++ I + Sbjct: 151 DDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKSKILDHV 210 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 W +F D N V+ + LR K+D +LI T+RG+GY Sbjct: 211 WNYDFGGDGNVVESYVSYLRRKID-TKEPRLIHTVRGVGYVL 251 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 126/224 (56%), Gaps = 6/224 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D ++ ++ + L + + I+ SDG++ L + + LIILD+MLP + G + Sbjct: 4 KILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISGEE 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + Q +R KQTP++ LTA+ + +D+V G GA+DYLVKPFS ELLAR++A LR+ + Sbjct: 64 VCQKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSNQK 123 Query: 122 NSTLEI-----SGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 EI L++ V + LTR EF +L L G++ R +A ++ Sbjct: 124 AEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQLAKKV 183 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 G+ + T+D I+ +R K+ + +LI T+ G+GY F Sbjct: 184 MGLEYKGYDRTIDAHIKNIRKKL-NLEKNQLIITVYGVGYKFEG 226 >UniRef50_B5D1V8 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=B5D1V8_9BACE Length = 231 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 86/227 (37%), Positives = 125/227 (55%), Gaps = 7/227 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+IED++R + + GL E GY DG GL L + L+I DI+LP +DG+++ Sbjct: 4 ILIIEDDKRVADLLKTGLEENGYHTMVAYDGAMGLRLFQSHSFQLVISDIILPKLDGFEL 63 Query: 63 LQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + +R A PV+ LTA S DD++ G D+GA+DY+VKPF F EL AR++ L++ Sbjct: 64 CKEIRKANPHIPVLMLTALGSTDDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRKAEA 123 Query: 122 ------NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 L L++D+ V R I L+ KE+ LL + A +I R IA + Sbjct: 124 TVSVVAPEKLTYKDLQIDTNRREVMRQGNLIRLSPKEYNLLTYMVQNAERVISRIEIAEK 183 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 +W +FD+ TN +DV I LR K+D F KLI T G+G+ K Sbjct: 184 VWNTHFDTGTNFIDVYINYLRKKIDKDFETKLIHTKPGIGFILTDEK 230 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 124/224 (55%), Gaps = 5/224 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL+IED + + L GY + +DG +GL + + L++LD+M+P +DG+ Sbjct: 3 RILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGFA 62 Query: 62 ILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + LR A P++ LTA+ ++DRV GLD+GA+DYLVKPFS ELLARVRA LR+H Sbjct: 63 LCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRHQR 122 Query: 121 LN---STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 +TL + +D V + R + T KE+ +L LL+ GE I R +W Sbjct: 123 EKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDVVW 182 Query: 178 GINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVA 220 G T TVD I LRAK++ DP + I T+ G+GY Sbjct: 183 GYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLEG 226 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 131/231 (56%), Gaps = 9/231 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL++ED+ + ++ L + Y + +DG +GL L + ++ +ILD+MLPG+DG + Sbjct: 6 RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGLE 65 Query: 62 ILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ--- 117 I + R + TP+I +AR S R+ GL+ GA+DYL KPFS EL+ARV+A LR+ Sbjct: 66 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 118 ----HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 TL+++GL +D ++ S D + LT +EF LL+ A G++ R + Sbjct: 126 LARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDLL 185 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAVKK 223 + +WG + +TV+ I RLRAK++ DP I T+ G GY A + Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPGQ 236 >UniRef50_B2JBG7 Two component transcriptional regulator, winged helix family n=3 Tax=Cyanobacteria RepID=B2JBG7_NOSP7 Length = 228 Score = 298 bits (766), Expect = 6e-80, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 122/225 (54%), Gaps = 3/225 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL+IED++R + + + L +V+D DG +G A +Y LI+LD+MLP +DG Sbjct: 1 MRILIIEDDERIAKPLAEDLKHQHHVVDIACDGIEGWEYAQAGNYDLILLDLMLPRLDGI 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + + LR + ++ LTARD+ +++ GLD+GA+DYLVKPF EL AR+RA R+ Sbjct: 61 TLCKRLRASNYNAFILMLTARDTTPNKIIGLDAGADDYLVKPFDLEELAARIRALSRRSQ 120 Query: 120 ALNS-TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L L++D + V+ N ++LT KE+ +L +++ R+ I ++W Sbjct: 121 ETRQLILMHGDLQLDPRNCHVTYGNKPLSLTHKEYMILECFLKNPTQVLTRSAILDKLWE 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPF-PEKLIATIRGMGYSFVAVK 222 + S TV I LR K+ E I T+ G+GY + Sbjct: 181 FDKLSGEETVKTHITNLRKKLRAVGSSEDFIETVYGIGYRLCPKE 225 >UniRef50_Q2IUG0 Two component transcriptional regulator, winged helix family n=207 Tax=Bacteria RepID=Q2IUG0_RHOP2 Length = 257 Score = 298 bits (766), Expect = 7e-80, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 131/223 (58%), Gaps = 6/223 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L++ED+ +T L++AGYV+D DG +G +L + Y ++LDI LP MDG Sbjct: 30 RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGIS 89 Query: 62 ILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 +L+ R A+ PV+ LTARD D+V+G D+GA+DY+ KPF E+LAR+RA LR+ Sbjct: 90 VLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSAG 149 Query: 121 -LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 S L + +D+ + VS + LT E++LL L +G ++ RT + ++ Sbjct: 150 HAQSELTCGPVVLDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRTELVEHLYDQ 209 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 +FD D+NT++V + R+R K+D +I T+RG+GY Sbjct: 210 DFDRDSNTIEVFVGRIRKKLD----VDIIQTVRGLGYLLTPPP 248 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 298 bits (766), Expect = 7e-80, Method: Composition-based stats. Identities = 91/228 (39%), Positives = 131/228 (57%), Gaps = 11/228 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D + + L+ GY + S+G + L + K+ +L++LD+M+P +DG+ Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDGYG 66 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + Q LR P+I LTA V DR+ GL+ GA+DY+VKPFS EL AR+R+ LR+ + Sbjct: 67 VCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADKI 126 Query: 122 --------NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 + + I L++D+ V ++N + LT EF LL LL S+AGE R I Sbjct: 127 TTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRASIL 186 Query: 174 SEIWGINFD--SDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSF 218 E+WG + DT VDV I RLRAK+ DDP LI T RG GY F Sbjct: 187 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234 >UniRef50_A9BP99 Two component transcriptional regulator, winged helix family n=60 Tax=Proteobacteria RepID=A9BP99_DELAS Length = 262 Score = 298 bits (765), Expect = 8e-80, Method: Composition-based stats. Identities = 95/221 (42%), Positives = 138/221 (62%), Gaps = 4/221 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLP-GMDGW 60 + L+IED+ ++ +GL + G + SDG G+ +A+ + + +IILD MLP G DG Sbjct: 31 RYLIIEDDALNARYIAEGLRQQGAQVAVCSDGVQGIAMAVGESWDVIILDRMLPNGFDGL 90 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 QILQTLR+ KQTPV+ L+A + D+RVRGL +G +DYL KPF+FSEL AR+ A +R+ Sbjct: 91 QILQTLRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQ 150 Query: 120 --ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 A + ++ LR++ ++ S R + L +EF+LL L A +I+ RT++ +W Sbjct: 151 IPAPAREMRLADLRLNLLTRSAERAGQPLALQPREFRLLAFLMQHAHQIVTRTMLLESVW 210 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 FD TN +DV I RLR KVD F LI T+RG+GYS Sbjct: 211 DYRFDPQTNVIDVHISRLRGKVDKGFEPALIHTVRGVGYSL 251 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 126/224 (56%), Gaps = 4/224 (1%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL++ED++ + + + L GY + DGR L L + LIILD+MLP M G ++ Sbjct: 5 ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMSGLEV 64 Query: 63 LQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 Q LR+ TP+I LTAR D+V GL GA+DYL KPF+ ELLAR+ A LR+ H Sbjct: 65 CQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTHQS 124 Query: 122 NST--LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 + + + L +D SV ++ + L+ +EFQ+L L AG+ + R I E+WG Sbjct: 125 KPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIYQEVWGY 184 Query: 180 NFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFVAVK 222 + T+D I RLR+K++D P + I T+ G GY FV + Sbjct: 185 DTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFVVPE 228 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 134/233 (57%), Gaps = 11/233 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+IED ++ L+ GY + G+ G AL+ D+ LI+LD+MLPGM+G++ Sbjct: 4 RLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMNGFE 63 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 I+ LR+ +TPVI LTA+++ ++ V+GL SGA+DY+ KPF +ELLARV A LR+ Sbjct: 64 IMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRSTG 123 Query: 121 L----------NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRT 170 NS + + L + + V+ + ITL KEF++L LA + G ++ R Sbjct: 124 KEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMTRD 183 Query: 171 VIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 + + +WG ++ TVDV + LR K++ I +IRG+GY V KK Sbjct: 184 DLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDPQSVHIDSIRGVGYKLVVNKK 236 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 126/227 (55%), Gaps = 7/227 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+IED++ + + + L GY + DG DGL L+++D+MLP +DG+++ Sbjct: 16 ILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVDGFEV 75 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 + +R + P+I ++AR S D++ L GA+DY+ KPFS EL+ARV++ LR++H N Sbjct: 76 CRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRRYHRYN 135 Query: 123 ------STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 L GL +++ V D +TLT KEF+LL LA G++ + + + + Sbjct: 136 GLKEQEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSKEQLYNRV 195 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPF-PEKLIATIRGMGYSFVAVK 222 W + D TV V I+ +R K+ D + I T+ G+GY F+ K Sbjct: 196 WKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKFIGQK 242 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 119/220 (54%), Gaps = 4/220 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL++ED+Q+ Q+ + L Y DG + ++++ L+ILD+ LP DG+ Sbjct: 3 KILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDGFS 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH--- 118 +L+ ++ + PVI LTAR D++ G G +DYL KPFS +EL+ R++A LR++ Sbjct: 63 VLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYRKG 122 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L+ + ++ + V ++ + LT KE+ LL LL I + I +W Sbjct: 123 RGEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQIMDRLWP 182 Query: 179 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYS 217 F D N V V +RRLR K+ +DP ++I T+ G+GY Sbjct: 183 DTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYK 222 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 120/232 (51%), Gaps = 11/232 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL++ED + V L G+ + DG+ + +++ L ILDIMLP MDG + Sbjct: 3 KILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDGSE 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 +LQ +R PVI LTA+D+ D+V GA+DY+VKPFS EL ARV+A LR+ Sbjct: 63 VLQYIRRKTSKPVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTEGT 122 Query: 122 ----------NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTV 171 + L L ++ + V I+L KEF LL LA R ++ Sbjct: 123 HHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVTIAQ 182 Query: 172 IASEIWGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFVAVK 222 I +WG F D NTV V I RLR K+ +DP + + T+RG+GY V K Sbjct: 183 IYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRLVCGK 234 >UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanylate cyclase (GGDEF) n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZNT0_ACAM1 Length = 792 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 118/226 (52%), Gaps = 3/226 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL++ED++ E + L + Y ++ +DG+ L +Y LI+ D+MLP +DG Sbjct: 1 MRILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEAFEYDLILSDVMLPRLDGV 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + Q LR Q P++ LT +DS DR GLD+GA+DY+VKPF EL ARVRA LR+ Sbjct: 61 GLCQQLRSQGYQIPILLLTGKDSSHDRAIGLDAGADDYVVKPFDPEELAARVRALLRRGE 120 Query: 120 AL-NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 A+ L+ L++D + V ++ + LT KE+ L+ L+ + +I IW Sbjct: 121 AIKPPILKWENLQLDPRACEVKYQDVLLKLTPKEYALVELMMRNTRRVFSCGMILEHIWT 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSFVAVKK 223 V I+ LR K+ LI T+ G+GY + + Sbjct: 181 YEDTPGEEAVRTHIKGLRQKLKASGAPTDLIETVYGIGYRLKPLAE 226 Score = 92.5 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 12/146 (8%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +I++++D+ + E V G + + + L++LD+ +P + G Sbjct: 489 RIMIVDDDPQILETVAALCKPWGLEVIGLDEPTQFWETLTNSPPDLLLLDVEMPEIGGID 548 Query: 62 ILQTLR---TAKQTPVICLTARDS--VDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR 116 + + +R +Q P+I LTA V ++V SGA+D++ KP EL+ R+ +L Sbjct: 549 LCRVVRNDIQWEQLPIIFLTAHTEADVVNQVYA--SGADDFISKPIVGPELVVRILNRLE 606 Query: 117 QHHALNSTLEISGLRMDSVSHSVSRD 142 + L L +D ++ +SR Sbjct: 607 RTR-LQRRLS----TIDPLARVLSRH 627 >UniRef50_D1VF89 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VF89_9ACTO Length = 306 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 8/224 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+++D + + V L G+ ++ V G+ L D L++LD+ML +DG+ Sbjct: 80 RVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDIDGFA 139 Query: 62 ILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH- 119 + + LR P + LTARD+ D+VRGL G +DY+ KPFS SEL+ARVRA LR+ Sbjct: 140 VCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAGS 199 Query: 120 -----ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 + L + L +D + V R + LT E++LL L + A ++ R + Sbjct: 200 PVTGDGHPAPLRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRAQLLD 259 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +WG +F + ++ I LR KVD+ P LI T+RG+GY Sbjct: 260 HVWGHDFSGEGGVLETYISYLRRKVDNVEPP-LIHTVRGVGYVL 302 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 117/231 (50%), Gaps = 14/231 (6%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +LL+ED ++ + + L + + + + R L + + L+ILD+M+PG+DGW Sbjct: 7 VLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPGLDGWTT 66 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 + +R + P++ LTAR DRV G + GA+DY++KPFS EL+ RV+A LR+ + Sbjct: 67 CRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRRRSSTP 126 Query: 123 ST------------LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRT 170 L L + +++L+ E+ LL LA AG ++ R Sbjct: 127 PQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNAGRVLSRD 186 Query: 171 VIASEIWGINFDSDTNTVDVAIRRLRAKVDD--PFPEKLIATIRGMGYSFV 219 ++ +WG F D+ TVD +RRLR K+ P + T+RG GY F Sbjct: 187 LLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKFE 237 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 297 bits (763), Expect = 1e-79, Method: Composition-based stats. Identities = 88/230 (38%), Positives = 126/230 (54%), Gaps = 10/230 (4%) Query: 1 MK--ILLIEDNQRTQEWVTQGLSEAG-YVIDAVSDGRDGLYLALKDDYALIILDIMLPGM 57 MK I++IED+ + + L + G + + + G GL L+ LI+LDI LP M Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60 Query: 58 DGWQILQTLRTAKQT---PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQ 114 +G++I + LR + T P+I LTAR D++ GL GA+DY+ KPFS EL+AR+ A Sbjct: 61 NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120 Query: 115 LRQHHA-LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 LR+ +S + L +D V I LTRKEF LL LLA G ++ R + Sbjct: 121 LRRTEGTPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREYLL 180 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 +WGI++D +T T+DV IRR+R K+ I T G+GY FV K Sbjct: 181 DRVWGIDYDGETRTLDVHIRRVRQKLGIDG---YIETAVGIGYRFVEAGK 227 >UniRef50_A6M1X5 Two component transcriptional regulator, winged helix family n=8 Tax=Firmicutes RepID=A6M1X5_CLOB8 Length = 229 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 83/220 (37%), Positives = 134/220 (60%), Gaps = 2/220 (0%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+++D + +++ GL GY++ DG + + LA K + ++ILDIMLPGMDG+++ Sbjct: 11 ILIVDDEKSIVDFIKMGLEGEGYLVYEAYDGNEAIELARKINPNIVILDIMLPGMDGYEV 70 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH-HAL 121 ++ + +T VI LTA D VDD+V+GLD GA+DY+ KPFSF ELLAR+ A++R L Sbjct: 71 CSIIKKSIKTSVIMLTALDEVDDKVKGLDIGADDYMAKPFSFKELLARINARIRNSFPEL 130 Query: 122 NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINF 181 + I ++D +H ++ + L ++ LL L G + +++I ++WG +F Sbjct: 131 SDITNIGNFKVDDKAHEITYREKVLDLPPTQYNLLSFLLMNNGIALSKSLILEKVWGYDF 190 Query: 182 DSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 + + N V+V IR LR K+ D +I T+RG+GY VA Sbjct: 191 NGEDNIVEVYIRYLRDKIGD-KDHNIIKTVRGVGYKMVAQ 229 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 122/227 (53%), Gaps = 10/227 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+LL++D + V Q L Y + +G L K+ L+ILD+MLP +DG++ Sbjct: 6 KVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLIDGYE 65 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + +T+R + P++ L+A+ + D+ G + GA+DYLVKPFS EL RV+A LR+ Sbjct: 66 VCRTIRETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSFDK 125 Query: 122 NS---------TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 + L ++ SH V + LT KEF+LL +A ++ R + Sbjct: 126 EQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTREQL 185 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 + +W + +DT+T+ V IR+LR K++ DP + I T+ G+GY F Sbjct: 186 FAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M ILLIED++ V + L + + +DG G + + Y L+++D+MLP MDG+ Sbjct: 1 MAILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGF 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH- 119 + + +R + + P+I ++A+ + D+V+ GA+DY+ KPFS EL ARV+AQ+R++ Sbjct: 61 ALCEKIRASSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYER 120 Query: 120 ---ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 L+ + +D V I+LT KEF+LL LA+ G + + + + + Sbjct: 121 SYPQQEDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELYAAV 180 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPF-PEKLIATIRGMGYSFVAV 221 W + D+ TV V ++ +R K+ D K I T+ G+GY F+ + Sbjct: 181 WNGDGF-DSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKFIGL 225 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 80/219 (36%), Positives = 125/219 (57%), Gaps = 4/219 (1%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L++ED R + V + G+ + SDG + L + ++ L ILDIM+P +DG + Sbjct: 5 VLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDGLAV 64 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 + +R TP+I LTA+ +D++ G + GA+DY+ KPFS LLA+ +A LR+ LN Sbjct: 65 CRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTGTLN 124 Query: 123 --STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 + L+ +GL ++ +SH V + + L+ KE+ LL L+S G + R I +WG + Sbjct: 125 DKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWGYD 184 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 + D TVD I+RLR K+ D IAT+RG GY F Sbjct: 185 YFGDIRTVDTNIKRLREKLLDKAN--YIATVRGSGYKFE 221 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 125/224 (55%), Gaps = 7/224 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+L+IED++ +E L + Y + DG +G+ + ++ L++LDI+LPGM G++ Sbjct: 4 KVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMKGYE 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH--- 118 I Q +R + P+I L+ + + D+V+GLD+GA+DYL KPF F+EL AR++A LR+ Sbjct: 64 ICQKIRMLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRSKMN 123 Query: 119 ---HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 + L +D S+ V ++L KE QLL LL + I + Sbjct: 124 ANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSAEKIYDQ 183 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSF 218 IWGI+ D TV V I LR K+++ P KLI T+RG GY F Sbjct: 184 IWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKF 227 >UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63CK0_BACCZ Length = 254 Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 124/222 (55%), Gaps = 1/222 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 IL+++D+ +E V+ L G+ DG D L + ++ILDIM+P MDG+ Sbjct: 33 NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFD 92 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH-A 120 + LR P++ LTA+ +V+G G +DYLVKPF EL+ RV+A L+++ Sbjct: 93 VCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 152 Query: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 ++ ++++ + ++ + V+ ++TL KEF+LL+ L S+AG R + ++WG + Sbjct: 153 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 212 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 F+ + T+DV I RLR K + + I TIRG+GY K Sbjct: 213 FEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVSK 254 >UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C3P9_9CLOT Length = 241 Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 118/219 (53%), Gaps = 3/219 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +L++ED + Q+ + + + G+ DG D L + + L+ILD+M+P +DG+ Sbjct: 22 NVLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPMDLMILDVMMPHLDGFS 81 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + + R P+I LTA+ DD+++G + GA+DY+ KPFS LLA+ A LR+ Sbjct: 82 VCKLAREMSNMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLRRSSPA 141 Query: 122 N-STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 L + + + SH V D ITLT KE++LL+ L G+I R + + IWG + Sbjct: 142 PLDALNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQIFARDQLLNRIWGYD 201 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 F+ T TVD I+ LR K+ D K I T+ GY F Sbjct: 202 FEGTTRTVDTHIKTLRQKLGDEG--KHIVTLIRSGYKFE 238 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 115/225 (51%), Gaps = 9/225 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+++D + V L G+ + + G++ L A D L+ILD+MLP DG++ Sbjct: 22 RVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGFE 81 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + + LR + V+ LTARD+ D++ GL G +DY+ KPF+ EL+ARVRA LR+ Sbjct: 82 VCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTRR 141 Query: 121 LNST-------LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 L + + +D +H V R + + L+ EF LL ++ R I Sbjct: 142 PAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRAQIL 201 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 + +W +FD + VD + LR K+ P LI T RG GY+ Sbjct: 202 AAVWDRDFDGEPTVVDQYVSYLRRKLGQHGPP-LIHTQRGFGYAL 245 >UniRef50_UPI0001B559F0 two-component system, response regulator n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B559F0 Length = 247 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 82/223 (36%), Positives = 123/223 (55%), Gaps = 7/223 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L++ED+ + +T L AGY + + SDGR ++ A LI+LD+MLP DG+++ Sbjct: 13 VLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGFRL 72 Query: 63 LQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + LR TPV+ LTAR V+DR+ GL SG +DY+ KPF E+L RVRA LR+ A Sbjct: 73 TRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGAP 132 Query: 122 NST------LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 ST L +GL +D +H V + L+ EF+LL + ++ + I Sbjct: 133 ASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQR 192 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +W +F DT VD ++ LR K+D L+ T+RG+GY Sbjct: 193 VWRYDFSGDTRIVDTYVKNLRRKLDHGGAPALLHTVRGVGYCL 235 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 74/225 (32%), Positives = 126/225 (56%), Gaps = 7/225 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 IL+ +DN + + + V +DG + + + + + A+++LD+M+P DG++ Sbjct: 3 HILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDGYE 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ---- 117 + + +R PVI +TAR +++ GLD GA+DY+VKPFS SE++AR+RA LR+ Sbjct: 63 VCRKIRAKSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRMTKK 122 Query: 118 --HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 + L I+ L ++ +++ I+LT+KE + +W LAS ++ R + Sbjct: 123 ENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDNLLDS 182 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKL-IATIRGMGYSFV 219 +WG ++ D+ TVD I+RLRAK+D I TI G+GY F Sbjct: 183 LWGFDYFGDSRTVDSHIKRLRAKLDMLEHPNWSIKTIWGVGYKFE 227 >UniRef50_Q1R1E2 Two component heavy metal response transcriptional regulator, winged helix family n=11 Tax=Proteobacteria RepID=Q1R1E2_CHRSD Length = 223 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 120/220 (54%), Positives = 159/220 (72%), Gaps = 1/220 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED +T +++ +GL EAGY ++ DG DG +L + D+ LIILD+MLPG+DGW Sbjct: 1 MRILLVEDESKTADYLARGLGEAGYRVEVARDGLDGRHLIEEADFELIILDVMLPGLDGW 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH- 119 ++L+ +R Q PV+ LTARD+V+ RV+GL+ GA+DYLVKPFSF ELLARVR LR+ Sbjct: 61 ELLRLIRRHGQVPVLFLTARDAVEYRVKGLELGADDYLVKPFSFVELLARVRTLLRRGPL 120 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 +++ L MD + V+R + LT KEF LL LL R GE++ RT+IASE+WG+ Sbjct: 121 RERERFQVADLHMDVLKRRVTRGETRLALTNKEFALLQLLLEREGEVLSRTLIASEVWGM 180 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 NFDSDTN V+VA+RRLRAKVDDPF +LI T RGMGY Sbjct: 181 NFDSDTNVVEVAVRRLRAKVDDPFTRRLIHTERGMGYVLE 220 >UniRef50_Q020N6 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q020N6_SOLUE Length = 250 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 90/225 (40%), Positives = 134/225 (59%), Gaps = 5/225 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 ILL+ED+ +T ++ G+ ++A DGR GL A++ + LIILD+MLP +DG+++ Sbjct: 27 ILLVEDDTELTSLMTDYFAQHGFQVEAAHDGRTGLARAIEGSFDLIILDVMLPVLDGFEV 86 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH--- 119 L+ LR TPVI LTAR S DRV GL+SGA+DYL KPF ELLAR+RA LR+ Sbjct: 87 LRQLRKRSATPVIMLTARISQSDRVAGLNSGADDYLPKPFGPDELLARIRAVLRRTGHTD 146 Query: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 A +E +GLR+D + +V +I +T EF +L +L AG + R + + ++ Sbjct: 147 AAPPQIVESAGLRIDPAARAVWDHGEAIEITSIEFDILEILVRSAGRTVTRDELTAVLYQ 206 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 ++DV I LR K++ +I TIRG+GY F+A ++ Sbjct: 207 RPATPYERSLDVHISHLRKKLERD-DRSVIRTIRGVGYQFMAGER 250 >UniRef50_B5JI66 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JI66_9BACT Length = 224 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 96/218 (44%), Positives = 140/218 (64%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+L+ ED + ++ +GL EAGY +D DG + +LA +Y I DIM+PG DG Sbjct: 1 MKVLVAEDQTKVANFLAKGLGEAGYTVDLAKDGDEASWLAELHEYDAWIFDIMMPGRDGV 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-H 118 +++ LR K+TP I LTAR+ V+DRV+GLD+GA+DYL KPFS +ELLAR+RA LR+ Sbjct: 61 SLIRQLRRNGKRTPTILLTARNRVEDRVQGLDAGADDYLAKPFSLTELLARLRAILRRQR 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 +N+ + +S L++D VSH+ R I+LT +EF LL LL + + ++ I ++W Sbjct: 121 PEMNNLVSVSDLKLDLVSHTAWRGQREISLTNREFSLLELLMLASPRPVSKSAITEKVWD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 ++D+ TN V V I+ LR K+D LI T RG+GY Sbjct: 181 QSYDAGTNIVQVYIKYLREKIDQEGEPPLIQTARGIGY 218 >UniRef50_D1C5Q5 Two component transcriptional regulator, winged helix family n=52 Tax=Bacteria RepID=D1C5Q5_SPHTD Length = 244 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 129/226 (57%), Gaps = 9/226 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPG-MDGW 60 IL++ED + ++ +GL GY + G L D LIILDIMLPG +DG Sbjct: 6 HILVVEDERAIASFLRRGLVFEGYRVTVADTGARALDAVRDDPPDLIILDIMLPGDIDGL 65 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 ++ + +R A + P++ LTARD V DRV GLD+GA+DYL+KPF+F ELLARVRA LR+ Sbjct: 66 EVCRRIRAAGEGMPILMLTARDEVADRVAGLDAGADDYLIKPFAFEELLARVRALLRRQE 125 Query: 119 ------HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 A + + L +D+ S R + I LT +E++LL L +++ R VI Sbjct: 126 RRRAEEPADDGVYRFADLTLDTTSRFAYRGDRRIELTTREYELLLLFMRHPNQVLTRDVI 185 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +WG +F ++N ++V + LR ++ +L+ T+RG GY+ Sbjct: 186 MERVWGYDFPGESNVLEVYVSNLRRHLEAGGEPRLLQTVRGAGYAL 231 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 79/218 (36%), Positives = 129/218 (59%), Gaps = 2/218 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL+++D++ E + L G+ +DG L + L++LD+MLPG DG + Sbjct: 33 RILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSDGIE 92 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH-HA 120 + + +R P++ LTA+ D VRGL+SGA+DY+ KPF +EL+ARVRA+LR Sbjct: 93 VCRQIRGESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQK 152 Query: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 TL I+ + +D H V+R I+LT EF LL LA + ++ R ++ ++WG Sbjct: 153 APETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRELLLEQVWGYR 212 Query: 181 FDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYS 217 +DT V+V ++RLR+K++ DP +++ T+RG+GY Sbjct: 213 HAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >UniRef50_Q83N47 Two-component system response regulator n=8 Tax=Actinobacteridae RepID=Q83N47_TROWT Length = 251 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 75/218 (34%), Positives = 120/218 (55%), Gaps = 3/218 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D ++ + L AGY + +G + L ++ LII+D+MLP M G+ Sbjct: 29 KILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDMSGFA 88 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + LR A + PVI L+ARDS +D++ GL G +DY+ KPFS E+LARV A LR+ Sbjct: 89 ATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTKI 148 Query: 121 --LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 +++T+ + L +D S+ V I L+ EF+LL ++ ++ I +W Sbjct: 149 DDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVWD 208 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +FD D++ V+ I +R K+ E +I T RG GY Sbjct: 209 YDFDGDSSIVESYISYIRRKLAAYSSETIIHTKRGFGY 246 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 126/232 (54%), Gaps = 11/232 (4%) Query: 1 MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDG 59 MK IL+++D + L + + + +DG L +AL+ + IILD+MLP +DG Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 60 WQILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 + + +R AK +TP++ LTA+D+ D++ GL+ GA+DY+ KPFS E++AR+RA R+ Sbjct: 61 IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120 Query: 119 --------HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRT 170 + T+ + L +D + + + LT KEF+LL R ++ R Sbjct: 121 TQPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSRE 180 Query: 171 VIASEIWGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFVAV 221 + + +WG ++ ++T VD+ + LR K++D P + T+RG GY Sbjct: 181 KLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLEDP 232 >UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID=RCAC_FREDI Length = 651 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 119/224 (53%), Gaps = 3/224 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKILL+ED+ + +T+ L+ Y++D V DG G +Y LIILDIMLP +DG Sbjct: 1 MKILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGI 60 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + + R T P++ LTA+D++ +V+GLD+GA+DY+VKPF EL+AR+RA LR+ Sbjct: 61 SLCKRFRAQGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRGS 120 Query: 120 ALN-STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L L ++ + V+ + + LT E+ LL LL + + ++W Sbjct: 121 NNPFPLLTWGDLLLNPSTCEVTYNGCPLNLTTMEYDLLELLLRNCQHVFSSEELLDKLWS 180 Query: 179 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFVAV 221 TV +RRLR K+ P IAT+ G GY A Sbjct: 181 SEDFPSEATVRSHVRRLRHKLVAAGAPHDFIATMHGRGYYLKAP 224 Score = 94.0 bits (234), Expect = 3e-18, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 6/119 (5%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+++++D+Q + L G+ + ++D + + ++LD+ +P ++G++ Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586 Query: 62 ILQTLRTA---KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 + Q LR+ ++ PV+ L+ + + G +DYL KP EL R+ LR+ Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRI---LRR 642 >UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YVQ4_9FLAO Length = 224 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 85/221 (38%), Positives = 135/221 (61%), Gaps = 6/221 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M ILL+ED+QR ++ +GLSEAGY I G L D+ +I++DIMLPG+DG Sbjct: 1 MNILLVEDDQRISNFLIKGLSEAGYNITLADSGEKARELLHTYDFDIILMDIMLPGLDGM 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-- 117 Q+ Q +R TP++ L+A +S DD+++ LD GA+DYL KPF F EL++R++A R+ Sbjct: 61 QLTQIIRFKGNYTPILVLSALNSPDDKIKMLDMGADDYLSKPFHFEELISRIKALTRRNK 120 Query: 118 --HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 + + L + +D+ H V++++ I + E++L L +++ RT I Sbjct: 121 LSYKKEDQYLSCGNITIDTDLHKVTQNDKEIEFSPTEYKLFTFLMENKNKVLSRTQILHN 180 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 +WGI+FD+ TN VDV I +R K+D+ +K+I T++G GY Sbjct: 181 VWGIDFDNTTNVVDVYISYIRNKIDE-TEQKIIHTVKGTGY 220 >UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT Length = 1629 Score = 295 bits (758), Expect = 5e-79, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL++ED++ +T L+ Y ++ SDG L DY LI+LD++LP +DG Sbjct: 1 MKILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVILPRLDGI 60 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + + +R+ +Q P++ LT DS ++ GLD+GA+DY+VKPF EL+ARVRA LR+ Sbjct: 61 SLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRRGG 120 Query: 120 A-LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 LE L++D S V + ++LT KE+ LL L + + ++I IW Sbjct: 121 TTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIWS 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSFVAVKK 223 V I+ LR K+ + L+ T+ G+GY A ++ Sbjct: 181 YEDTPGEEAVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRLKAQEE 226 Score = 92.1 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 7/115 (6%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+L ++D+ + + L G + + D R + L+ILD+ +P +G + Sbjct: 382 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 441 Query: 62 ILQTLR---TAKQTPVICLTAR--DSVDDRVRGLDSGANDYLVKPFSFSELLARV 111 + Q +R + P++ LT + ++V GA+D++ KP EL+ R+ Sbjct: 442 LCQVVRNDPQWSELPILFLTVHKDGEIVNQV--FSVGADDFVSKPIVGPELVTRI 494 Score = 81.7 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 44/77 (57%), Gaps = 3/77 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L+ +D+ + + L + GY + V+ G++ + A +I+LD+++PGM+GW+ Sbjct: 1381 VLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWET 1440 Query: 63 LQTLRTAKQT---PVIC 76 + L+ + +T P++ Sbjct: 1441 MAMLKESTETKHIPIVI 1457 Score = 47.8 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 13/123 (10%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 ++IL++ED+ E + GR+ ++L+ + + L+ILD++LP DG+ Sbjct: 1501 VRILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQEVNPDLLILDLILPETDGF 1560 Query: 61 QILQTLRTAK---QTPVICLTARD-SVDDRVRGLDSGANDYL------VKPFSFS--ELL 108 ++ L+ + PV+ +A+D +R R L G ++L K F ELL Sbjct: 1561 AVVDWLQKHQRLCNIPVVVYSAKDLDESERKR-LKLGHTEFLTKGRVTTKEFEQRVIELL 1619 Query: 109 ARV 111 R+ Sbjct: 1620 QRI 1622 >UniRef50_B4VMC7 Response regulator receiver domain protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VMC7_9CYAN Length = 362 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 80/223 (35%), Positives = 120/223 (53%), Gaps = 2/223 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL++EDN + + GL++ YV+D DG GL AL +Y LI+LDI LP +D Sbjct: 1 MKILVVEDNPTLAQTIVAGLTQQNYVVDLAQDGETGLDNALAYNYDLILLDINLPHLDSI 60 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + + LR A T P++ L+A + D V GLD+GA+DY++KP L ARVRA LR++ Sbjct: 61 SLCRRLRQAGNTSPIVLLSASATTQDMVAGLDAGADDYIIKPCPVEGLAARVRALLRRNR 120 Query: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 A TL+ L +D + V+ + L+ KE+ LL+LL S I + I ++W Sbjct: 121 DASTPTLQWGNLEIDPSTCEVTCLGQPLRLSPKEYGLLYLLMSSPTRIFSQDYIIEKLWT 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 + TV ++ LR K+ +I T+ G GY + Sbjct: 181 FGDPPNRETVKAHVKGLRRKLKKAGVGDIIETVYGFGYRLKDI 223 >UniRef50_B5W2T9 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5W2T9_SPIMA Length = 774 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 124/225 (55%), Gaps = 3/225 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKILL++D+Q + +++ L YV+D +DG G +Y+L+ILDIMLP ++G Sbjct: 1 MKILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGI 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + + LR+ Q PV+ LTARDS +D+V GLD+GA+DYLVKP EL+AR+RA LR+ Sbjct: 61 ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRAT 120 Query: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 +L + L ++ +S + LT KE+ L+ L + I +W Sbjct: 121 ISLPPVIHWGDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLWS 180 Query: 179 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFVAVK 222 I + NTV I+ LR K+ D KLI + G+GY ++ Sbjct: 181 IEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRIKSLD 225 Score = 91.7 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 67/165 (40%), Gaps = 19/165 (11%) Query: 8 DNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLR 67 D+ + E + L G + ++ R + + L+I+D+ +P +G + Q +R Sbjct: 493 DDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGIDLCQVIR 552 Query: 68 TA---KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALNST 124 + P++ LT + R +GA+D++ KP EL+AR+ ++L + + Sbjct: 553 NEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHRSRLWRNI 612 Query: 125 LEISGLR-----------MDSVSHSVSRDNISITLTRKEFQLLWL 158 EI L ++ + R + F +L L Sbjct: 613 AEIDTLTGIENRYKSTEDINRLIRIAGRHKQPL-----CFAILDL 652 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 129/227 (56%), Gaps = 6/227 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +ILL ED+ +T L GY +++ DG L A+ Y LI+LD+MLP G+ Sbjct: 4 RILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSGFD 63 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + + LR ++ P++ LTAR V D+V GL SGA+DYL KPF ELLAR+ A LR+ Sbjct: 64 VCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRAPV 123 Query: 121 LNS----TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 S T ++ G+ +D V+R +TL+ +E++LL L GE + R + +++ Sbjct: 124 RRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLTQV 183 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFVAVK 222 WG + +DT TVDV + LR K+++ P + + T+RG+GY + Sbjct: 184 WGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKLSDEE 230 >UniRef50_C6LFE5 DNA-binding response regulator CsrR n=2 Tax=Firmicutes RepID=C6LFE5_9FIRM Length = 247 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 93/230 (40%), Positives = 136/230 (59%), Gaps = 11/230 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 IL++ED ++ +V L GY + +GR+ L +AL D+ALI+LDIMLPG++G + Sbjct: 10 HILVVEDEEKLARFVELELVHEGYTVSKAVNGREALEIALSGDFALILLDIMLPGLNGLE 69 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQL------ 115 +L+ L+ K TPVI LTARD+V D+V GLD+GA DY+ KPF+ ELLAR+R L Sbjct: 70 VLRRLQQEKPTPVILLTARDAVMDKVAGLDAGAVDYITKPFAIEELLARIRVALKLHGDT 129 Query: 116 RQHHALNS-----TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRT 170 R+ L++ H V+ D I LT +EFQ+L L ++ R Sbjct: 130 RRSARRPEEEETGVYRWGRLQLSEKRHQVTYDGTEIILTNREFQMLKTLLENQDIVLTRE 189 Query: 171 VIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 V+ + + G ++ +TN VDV IR LRAK+D+ F K+I T+RG+GY + Sbjct: 190 VLLNRVCGYDYVGETNVVDVYIRFLRAKIDEAFQIKMIQTVRGVGYVIKS 239 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 84/222 (37%), Positives = 123/222 (55%), Gaps = 6/222 (2%) Query: 4 LLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQIL 63 LL++D+ +E L AG+ + DG L + +++LD+MLP MDG+Q+L Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 64 QTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH---- 118 +R + PVI LTA +DR+ GLD GA+DYL+KPFS EL++RVRA LR+ Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFLAP 121 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L GL +D V + + LT +EF LL+ LAS ++ R + +WG Sbjct: 122 ADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLDRVWG 181 Query: 179 INFDSDTNTVDVAIRRLRAK-VDDPFPEKLIATIRGMGYSFV 219 ++FD D+ TVDV + RLR K + P + + T+ G GY FV Sbjct: 182 LDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFV 223 >UniRef50_C8WKQ8 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C8WKQ8_EGGLE Length = 237 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 86/222 (38%), Positives = 134/222 (60%), Gaps = 2/222 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED+ R + + L+E GY D V DG GL A DY +IILD+MLP MDG+ Sbjct: 1 MQVLIVEDDVRLAQALAHILAENGYQTDVVHDGASGLAYAECGDYDVIILDVMLPKMDGF 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++ LR PV+ LTARD+V D++ GLDSGA+DY+ KPF+ +ELLA +RA R+ Sbjct: 61 AVVAQLRRKSISVPVLLLTARDAVPDKITGLDSGADDYMTKPFAPAELLAHLRALTRRQG 120 Query: 120 A-LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L L L ++ S+ ++ + SI L+ KEF L +L + AG+++ + ++ +++WG Sbjct: 121 EVLFEKLAAGDLVLNLESYDLACGSKSIHLSYKEFSLAKVLMANAGQVVSKDMLIAKVWG 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 + ++ N V+ + LR K+ I T+R GY FVA Sbjct: 181 VESSAEDNNVEAYVSFLRKKMKFLGSTARIETLRRAGYRFVA 222 >UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicutes RepID=A7GEN9_CLOBL Length = 229 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 123/223 (55%), Gaps = 6/223 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D ++ + GY + S+GR+ + K D +I+LDIM+P +DG+Q Sbjct: 4 KILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDK-DIDIILLDIMMPNIDGFQ 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + Q +R P+I L+AR S D+++GL G +DY+VKPFS EL ARV+A LR+ + Sbjct: 63 VCQKIRDKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKRI 122 Query: 122 N----STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 S + L +D S V + I T KEF ++ LLA ++ + I ++W Sbjct: 123 PLNNRSKISFGKLTLDINSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKVW 182 Query: 178 GINFDSDTNTVDVAIRRLRAK-VDDPFPEKLIATIRGMGYSFV 219 G + + D NTV I+++RAK + IAT+ G+GY + Sbjct: 183 GYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWE 225 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+++D+ ++ V + L AGY ++ DG L L + L++LD+MLPG+ G + Sbjct: 10 RVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGLE 69 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + + LR + PV+ LTA DRV GL+ GA+DY+VKPFS EL+ RV + LR+ Sbjct: 70 VCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRARTS 129 Query: 122 NS----TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 L LR+D + + D + LT +EF LL L G R + ++W Sbjct: 130 QPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQVW 189 Query: 178 GINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAVK 222 G +F D +TV V +RRLR KV+ DP I T+ G+GY + V+ Sbjct: 190 GWSF-GDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRYDPVR 234 >UniRef50_B4B6S6 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4B6S6_9CHRO Length = 638 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 85/220 (38%), Positives = 129/220 (58%), Gaps = 2/220 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED+ T+ +TQ LS Y +D DG+ GL LA +Y L +LD+++P +DG Sbjct: 1 MRILLMEDDPLTRTVLTQTLSNHHYNVDVAKDGKSGLQLAQTYNYDLFLLDVVVPVLDGI 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + Q LR+ Q P++ LTA+DS D++ GLD+GA+DY++KP + L+AR+RA LR+ + Sbjct: 61 SVCQQLRSQGLQEPIVLLTAKDSSSDQIIGLDAGADDYIIKPVNLETLMARIRALLRRKN 120 Query: 120 A-LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 A L+S +E L+++ + V+ +N I LT KE+ LL L I R VI +W Sbjct: 121 ASLSSVIEWGNLQLNLSNCEVNCENEPIHLTAKEYALLELFLVNPKRIFNRRVILERLWD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 I TV I+ LR K+ + I T+ G+GY Sbjct: 181 IGESPGEETVSTHIKCLRQKLKNAGVSDPIETVYGLGYRL 220 Score = 67.5 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 3/78 (3%) Query: 26 VIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTA---KQTPVICLTARDS 82 + + + L++LD+ +P +G ++ Q +R P++ L+ Sbjct: 543 EVITCHNPNQFWEMLTTYHPNLLVLDLEMPQFNGLELCQVVRQDPTWNDLPILFLSIYTD 602 Query: 83 VDDRVRGLDSGANDYLVK 100 + + +GA+DY+ K Sbjct: 603 EEMIQQMFAAGADDYISK 620 Score = 61.7 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 3/102 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 60 IL+I+D+ E V ++ +D + L+ A+IILD+ DG+ Sbjct: 394 ILMIDDDLALAERVRIEAQTWNLNLEIATDLTVARQIILQKTPAIIILDLNFDSASEDGF 453 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKP 101 +L+ L ++ P+I T R+S++DR++ GA +L KP Sbjct: 454 TLLEELNQSRPNLPIIIFTGRESLNDRIKVARLGAKAFLHKP 495 >UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax=Bacteria RepID=B7IIP6_BACC2 Length = 221 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 129/219 (58%), Gaps = 6/219 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 IL++ED+Q QE + Q L Y + SDG +G+ K + LI+LD+M+P ++G++ Sbjct: 5 HILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFE 64 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH--H 119 + + +R+ P+I LTA + +D+++G D G +DY+ KPFSF L+ RV A LR+ Sbjct: 65 VSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDK 124 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 +N+ L +R+D ++ V +++ I LT KEF++L LL +++ R I ++WG Sbjct: 125 NVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWGY 184 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 ++ +T +D I+ LR K+ P I TI+G+GY Sbjct: 185 DYFGETRIIDTHIKNLRKKLAIP----YIKTIKGIGYKI 219 >UniRef50_C7MME5 Response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein n=2 Tax=Coriobacteriaceae RepID=C7MME5_CRYCD Length = 226 Score = 295 bits (756), Expect = 9e-79, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 119/220 (54%), Gaps = 2/220 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL++ED+ R E + L Y +D V DG GL A Y +LD+MLP DG+ Sbjct: 1 MQILVVEDDPRLAEALAAILKANDYQVDVVGDGDAGLAYAQSGLYDCAVLDVMLPRRDGF 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + LR P++ LTAR + D+V GLD+GA+DY+ KPF+ ELLAR+R+ R+ Sbjct: 61 SVAAQLRREGNALPILMLTARGEIRDKVEGLDAGADDYMTKPFAPVELLARIRSLTRRTG 120 Query: 120 ALN-STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 ++ TL + + +D + + I L++KEF ++ +L ++ + + + S++WG Sbjct: 121 SVEFETLSFNDITLDLDACELECKGKRIRLSQKEFDIMHVLMAQPSRVASKDSLISKVWG 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 + + N V+ + LR K+ I T+RG GY Sbjct: 181 YDSTAADNNVEAYVSFLRKKLAFIGATTCIVTLRGQGYRL 220 >UniRef50_Q2G7V2 Two component transcriptional regulator, winged helix family n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G7V2_NOVAD Length = 227 Score = 295 bits (756), Expect = 9e-79, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 126/228 (55%), Gaps = 9/228 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL+IED + +GL++ G + +DG GL LA + I+LD+ LP MDG+ Sbjct: 1 MRILIIEDEIELAGALHRGLTQEGCKVTLATDGSTGLELAASLAFDFILLDVNLPDMDGF 60 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++ LR T P+I +TARD + DR+RGL GA+DYL KPF+F ELLAR+ A R+ Sbjct: 61 EVCARLREQGSTMPIIMVTARDEIADRIRGLKGGADDYLTKPFAFEELLARMDAIKRRMA 120 Query: 120 -------ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 + + + L D + +++R + LT KE +L LL G +I RT I Sbjct: 121 PSQGGKVQPDGRITVGDLHFDPRTMTLTRAGTPVQLTVKEMGVLRLLMESPGTVISRTEI 180 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 +WG+ D TN V+V + RLR K+ P ++ +RG GY +A Sbjct: 181 LRAVWGMEDDPLTNIVEVYLSRLRRKLHALGPP-VVENVRGFGYRLIA 227 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 121/234 (51%), Gaps = 14/234 (5%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 I++++D +E + L AG+ ++ + G + + + K LI+LD+MLP +DG+ + Sbjct: 14 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 73 Query: 63 LQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + +R TPV+ LTARD D+V GL G +DY+ KPFS E++AR+RA LR+ Sbjct: 74 TRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 133 Query: 122 ---NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + + + L ++ SH VSR I L+ E++LL L G ++ + I +W Sbjct: 134 VEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 193 Query: 179 INFDSDTNTVDVAIRRLRAKVD----------DPFPEKLIATIRGMGYSFVAVK 222 ++ D V+ I LR KVD + LI T RG+GY A K Sbjct: 194 YDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMIRAPK 247 >UniRef50_B5VWD3 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5VWD3_SPIMA Length = 628 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED+ + + L+ Y +D V+DG+ G Y L++LDI LP +DG Sbjct: 1 MRILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPLLDGI 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 + LR+ Q P++ LTAR++ D+V+GLD+GA+DY+VKP +EL AR+RA LR+ Sbjct: 61 SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 A +S L + +D+ + VS + + LT KE+ LL LL I ++W Sbjct: 121 EATSSVLTYEKMVLDTSTCDVSYNGKPLKLTPKEYGLLELLMGNRQRTFSIDKILDKLWT 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSF 218 + NTV I+ LR K+ + I T+ G+GY Sbjct: 181 FDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRL 221 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 65/130 (50%), Gaps = 3/130 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++++++D+ + + L G + D R L++LDI +P ++G + Sbjct: 497 RVMIVDDDPQMLAAIQGLLQPWGIQTITLDDPRQFWKTLESSHPDLLVLDIEMPHLNGIE 556 Query: 62 ILQTLRTA---KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 + Q +R + PV+ +TA+ R + +GA+DYL KPF+ SEL R+ +L++ Sbjct: 557 LCQIVRNDPRWRGLPVLFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLKRT 616 Query: 119 HALNSTLEIS 128 L + + + Sbjct: 617 QNLATRTDFA 626 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 6/225 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+IED + + + L Y +G++ + + + + +ILD+MLP + G + Sbjct: 7 RVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGEE 66 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 I + +R Q P++ LTA+ DR+ GLD GA+DY+ KPFS EL+ARVRA +R+ + Sbjct: 67 ICKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNNE 126 Query: 122 NST-----LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 L L++D + + + LT EF+LL + +G++ R + ++ Sbjct: 127 GLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDELVVKV 186 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 G ++ T+DV I+ LR K++ + K I T+ G+GY FV V Sbjct: 187 LGYDYVGYDRTIDVHIKNLRHKIECEY-YKYIVTVYGVGYRFVKV 230 >UniRef50_UPI0001C16C1D manR (Two component Transcriptional regulator, Winged helix family) n=2 Tax=Nostocaceae RepID=UPI0001C16C1D Length = 268 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 85/223 (38%), Positives = 121/223 (54%), Gaps = 5/223 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKILL++D + + + L+ GY++D +G+ G LA Y L+ILD MLP G Sbjct: 33 MKILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTYDLLILDWMLPEKTGL 92 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +I Q LR K PV+ LTA+D++DDRV+GLD+G +DYLVKPF ELLARVRA LR+ Sbjct: 93 EICQELRRQGKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRSS 152 Query: 120 ALNSTLE----ISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 + T+ + L +D + R I L+ KE QLL +++ I Sbjct: 153 VDSYTITGKLAVGDLELDMENQVAHRQGRIIELSEKESQLLKYFMENPEQLLTHGQIMQH 212 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +W ++N + IR LR K++ LI T+ G GY F Sbjct: 213 LWKGEKPPESNVIAALIRLLRRKIELGGESMLIHTVYGKGYRF 255 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 130/225 (57%), Gaps = 8/225 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL++ED+ + E L G+ ++ +DGR GL +A +D Y LI+LDIMLPG+DG+ Sbjct: 3 KILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDGFA 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + + LR K+ PV+ +TAR D +RGL GA+DY++KPF+ +EL+ARVR+ + ++ + Sbjct: 63 VCRELRRYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYERI 122 Query: 122 -------NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 ++ L + ++ V D + TR+EF+LL LA + R + Sbjct: 123 LASVKPEQHVVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSREALFE 182 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSF 218 +WG D+ TV V I R+R K+ +DP + + TIRG GY F Sbjct: 183 RVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRF 227 >UniRef50_Q2T1W7 DNA-binding response regulator n=22 Tax=Proteobacteria RepID=Q2T1W7_BURTA Length = 272 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 91/222 (40%), Positives = 133/222 (59%), Gaps = 5/222 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L IED++ T + L G+ +D V++GRDG+ A+ DDY +I LD MLPG+DG Sbjct: 50 RVLTIEDDEITANEIVGELKSRGFTVDWVANGRDGMARAISDDYDVITLDRMLPGVDGLT 109 Query: 62 ILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 IL T+R+ +TPV+ L+A VD+RVRGL +G +DYL KPF E+ AR+ LR+ A Sbjct: 110 ILTTMRSIGVRTPVLMLSALGDVDERVRGLRAGGDDYLTKPFDTEEMTARLEVLLRRSQA 169 Query: 121 ----LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 +TL + L +D +S V RD I L E+++L + AG+ I R ++ + Sbjct: 170 SPAPFETTLAVGPLTLDLISRKVYRDGAEIALLPTEYRVLEFMMRHAGQTITRMMLFEAV 229 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 WG +FD TN +DV + RLR K+D P +I T+RG GY Sbjct: 230 WGYHFDPGTNLIDVHMGRLRKKIDPPDATPMIRTVRGAGYIL 271 >UniRef50_Q47456 Transcriptional regulatory protein pcoR n=99 Tax=Bacteria RepID=PCOR_ECOLX Length = 226 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 113/220 (51%), Positives = 156/220 (70%), Gaps = 2/220 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL++ED Q+T ++ QGL E GY D ++GRDGL A K Y LIILD+MLP +DGWQ Sbjct: 3 RILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQ 62 Query: 62 ILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 I+ LR + PV+ LTA+D+V D+V+GL+ GA+DYL+KPF F+EL+ARVR LR+ + Sbjct: 63 IISALRESGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRARS 122 Query: 121 LNSTL-EISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 +T+ I+ + +D V +V R I LT KE+ LL LL R GE++PR++I+S +W + Sbjct: 123 QAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNM 182 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 NFDSDTN +DVA+RRLR+K+DD F KLI T+RG GY Sbjct: 183 NFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGYVLE 222 >UniRef50_C9XJX9 Two-component system response regulator n=108 Tax=Firmicutes RepID=C9XJX9_CLODC Length = 222 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 125/219 (57%), Gaps = 6/219 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+IED+ QE +++ LS GY +D +DG +G+ + Y L+ILDIM+P +DG+ + Sbjct: 5 ILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIMMPNLDGYGV 64 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL- 121 + +R + P+I LTA + D+++G D +DY+ KPFSF+ L+ RV A LR+ + Sbjct: 65 CKMIRKSSSVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRRSNKTI 124 Query: 122 -NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 + + L++D ++ D I LT KEF +L L + ++I R + IWG + Sbjct: 125 NDKFIVFEKLKLDLNTYIAEIDGEPIELTLKEFNILKALIEKYPQVITREGLLDSIWGYD 184 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 + DT VD I+ +R K+ P I T++G+GY+ Sbjct: 185 YYGDTRIVDAHIKNIRKKISLP----YIKTVKGIGYTLE 219 >UniRef50_A9H3V0 Two component Transcriptional regulator n=96 Tax=Proteobacteria RepID=A9H3V0_GLUDA Length = 258 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 84/219 (38%), Positives = 130/219 (59%), Gaps = 2/219 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++LL+ED+ + + V + L G+ + G DGL + + ++I+D MLP MDG Sbjct: 36 RVLLVEDDGKIAQEVAEELESRGFRVSRAETGPDGLSAGISGLFDVMIVDRMLPEMDGLT 95 Query: 62 ILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 ++++LR TPV+ L+A +VDDRV GL +G +DYL KPF+ EL AR+ A +R+ + Sbjct: 96 LIESLRGRQVSTPVLVLSALSAVDDRVSGLKAGGDDYLTKPFAMEELAARIEALMRRPNN 155 Query: 121 LNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 T L + L MD + +V+RD I L +EF+LL L R +++ RT++ ++W Sbjct: 156 TRETMLHVGPLSMDLIERTVTRDGEPIDLLPREFRLLEYLMRRPNQVLTRTMLLEDVWNY 215 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 F TN VDV I +LR K+DDP + LI +IRG G+ Sbjct: 216 RFIPQTNLVDVHIGKLRRKIDDPGAQPLIQSIRGTGFML 254 >UniRef50_A4VI02 DNA-binding response regulator n=12 Tax=Proteobacteria RepID=A4VI02_PSEU5 Length = 234 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 89/218 (40%), Positives = 132/218 (60%), Gaps = 6/218 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED++ E + L GY +D + DG L+ + + L+ILD+ LP +DG Sbjct: 16 MRILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGL 75 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 ++L+ LR A PV+ LTARD+ DR+ GLD+GA+DYLVKPF +EL AR+RA LR+ Sbjct: 76 ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 135 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + LE G+ +D V+ VS I L RKEF LL L ++ G ++ R + ++G Sbjct: 136 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 195 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 + D ++N ++V I LR K F +LI T+RG+GY Sbjct: 196 WDEDVESNALEVHIHHLRKK----FFPELIRTVRGVGY 229 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 117/226 (51%), Gaps = 8/226 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 + +L++ED + LS + V G + + + +ILD+ LP DG Sbjct: 4 INVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDCDGI 63 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ--- 117 +I + +R ++ L+AR S D+V GL GA+DY+ KPFS SEL+AR+ A LR+ Sbjct: 64 EICRKIREHSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRRQDR 123 Query: 118 ----HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 H L I + ++ + RDN I L+ KEF+LL+ LA ++ ++ + Sbjct: 124 WLQDHDVQKDVLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVFSKSQLL 183 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 +WG + D NT+ V IRR+R K++ +P + T+ G+GY F Sbjct: 184 DAVWGYDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKF 229 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 120/229 (52%), Gaps = 11/229 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 IL+++D + + + L G+ + G++ L + + ILDIMLP +DG+ Sbjct: 4 NILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDIDGFH 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 I Q +R P+I LTA+ D++ GL GA+DY+ KPF+ E++ARV+ QLR++ Sbjct: 64 ICQKIREKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYMRY 123 Query: 122 NSTLE----------ISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTV 171 N++ E I GL ++ +H S + LT EF +LW L G+++P Sbjct: 124 NNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVPSEE 183 Query: 172 IASEIWGINFDSDTNTVDVAIRRLRAKVDDPF-PEKLIATIRGMGYSFV 219 + +WG + + NTV I RLR K+ +P K I T+ G+GY+ Sbjct: 184 LFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGYTIE 232 >UniRef50_A4SHT1 Two-component system response regulator n=10 Tax=Proteobacteria RepID=A4SHT1_AERS4 Length = 218 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 84/220 (38%), Positives = 131/220 (59%), Gaps = 6/220 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL++ED + + + L +G+V D DG + +L + Y IILD+ LPG DG Sbjct: 1 MRILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGLPGRDGL 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +L+ R+ TPV+ LTAR + +++ GL++GA+DYL KPF +EL+ARV+A +R+ Sbjct: 61 SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVQALVRRAA 120 Query: 120 A-LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 +S LEI G+R+D + V + I LT EF++L L G+++ R+ + I+ Sbjct: 121 GNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIYA 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +FD D+NTV+V I R+R K LI T+RG+GY Sbjct: 181 QDFDRDSNTVEVFIGRIRKK----THADLIETVRGLGYRI 216 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 293 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 119/226 (52%), Gaps = 7/226 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D Q + + L + G+ + DG+ L + ++ LI+LD+MLP M G + Sbjct: 6 KILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPKMTGEE 65 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA- 120 + +R P+I LTA+ D+++ G+ GA+DYL KPFS EL+ RVRA LR+ + Sbjct: 66 VCNRIRAVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRRAYRD 125 Query: 121 ---LNSTLEI--SGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 + L L +D V + + + LT EF++L + S ++ R + + Sbjct: 126 FSPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFSREKLVEK 185 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVA 220 +G N++ TVD I+ +R K++ + I T+ GMGY F+ Sbjct: 186 AFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKFIP 231 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 293 bits (752), Expect = 2e-78, Method: Composition-based stats. Identities = 86/229 (37%), Positives = 117/229 (51%), Gaps = 13/229 (5%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL++ED E + + LS GY + +DGR L L + L+ILD MLP +DG ++ Sbjct: 8 ILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLDGLEV 67 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 L+T+R K TPV+ LTAR D V GL+ GA+DYL KPF EL+ARVRA LR+ + Sbjct: 68 LRTIRQTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRDQRIQ 127 Query: 123 -----------STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTV 171 L L +D H V+ + LT EF +L LL G R Sbjct: 128 QLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGRAFSRNY 187 Query: 172 IASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 + IWG ++ +VD A+ RLR K+ D I T+ G+GY A Sbjct: 188 LLDTIWGQSYVGGDRSVDNAMLRLRKKLADFGDA--IETVWGLGYRLQA 234 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 116/222 (52%), Gaps = 5/222 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+L+I+D + + + + + G+ + DG + L + + IILD+MLP +DG Sbjct: 17 MKVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDGI 76 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + +R +I LTA+D D++ GL+ GA+DY+ KPF+ EL+AR+R +R+ Sbjct: 77 TLCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQEK 136 Query: 121 LN---STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + L +D S +V+R I LT KEF +L LL G + R I +W Sbjct: 137 GEVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEIFQLVW 196 Query: 178 GINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSF 218 G DT T+DV ++ LR K+ D +I T G+GY F Sbjct: 197 GEPCY-DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYF 237 >UniRef50_Q8DHN5 Two-component response regulator n=2 Tax=Chroococcales RepID=Q8DHN5_THEEB Length = 229 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 81/221 (36%), Positives = 117/221 (52%), Gaps = 3/221 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+L+IED++ V + L+ Y+++ D GL + L+ILD+ LPGMDG Sbjct: 1 MKVLVIEDDRTIAGLVAESLAHQQYIVEIAYDAETGLDYLEATAFDLLILDLGLPGMDGL 60 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 QT+R P++ LTARD+ D+V GLD+GA+DY+VKPF ELLARVRA LR+ Sbjct: 61 SFCQTIRQRGHSLPILILTARDTSSDKVMGLDAGADDYMVKPFDLPELLARVRALLRRKP 120 Query: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L L +D V+ ++ + LT KE+ +L +L I+ R+ I W Sbjct: 121 LPFAPILHWGALILDPDRAKVTYNHQELHLTPKEYAILEVLLRHGSRILSRSAIMDYAWP 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSF 218 ++ TV V +R LR K+ LI T+ G GY Sbjct: 181 LDEMPGEETVKVHLRSLRHKLKAVGAPANLIETVYGFGYRL 221 >UniRef50_A7HL55 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A7HL55_FERNB Length = 229 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 126/223 (56%), Gaps = 6/223 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K++++ED+++ + + L GY + + G D + ++ L+ILDIMLP MDG++ Sbjct: 6 KLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPDMDGYE 65 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH- 119 + Q LR K ++ LTA D++ G ++GA+DYL KPF ELLAR++A LR+ + Sbjct: 66 VAQNLRKLKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRRKNI 125 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 +++ ++ L + +V + ++ L++ EF LL LA ++ + I +WGI Sbjct: 126 SISQPIKFGSLEIYENQRTVIYNGKNVDLSKTEFDLLLYLAKNKDRVVSKEEILDAVWGI 185 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 ++ NTV+V + +R K+ +LI TIRG+GY V K Sbjct: 186 DYYGSDNTVEVYVNYIRKKL----SPELIKTIRGVGYKLVGEK 224 >UniRef50_B8HQE6 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8HQE6_CYAP4 Length = 228 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 126/224 (56%), Gaps = 10/224 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL++ED R +V +GL G+V +D + L LAL + L+ILD+ LPG DG Q Sbjct: 3 RILIVEDEPRIAAFVEKGLRSHGFVTSVATDANEALDLALGGAFDLLILDLGLPGQDGLQ 62 Query: 62 ILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 +L LR + P+I LTARD + D++ + GA+DYL KPF F ELL RV+A+LR ++ Sbjct: 63 VLGQLRGQGESLPIIILTARDDIRDKIASFEGGADDYLTKPFRFEELLLRVKARLRTNYG 122 Query: 121 LN-----STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 + S L+ + +D + V + + L+ +EF L G+++ R + Sbjct: 123 VPKRQEESVLKCDNVLLDLRTRKVKVGDRWLELSAREFTLAETFFRHPGQVLSREQLLDR 182 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 +WG ++D +N VDV + LR K+ + +LI T+RGMGY Sbjct: 183 VWGYDYDPGSNIVDVYVGYLRKKLGN----ELIETVRGMGYRLK 222 >UniRef50_C0Z6J5 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z6J5_BREBN Length = 231 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 84/222 (37%), Positives = 130/222 (58%), Gaps = 4/222 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M ILL+ED+ + + LS+ + ++ V+D + + Y L ILD M+ G Sbjct: 1 MHILLVEDDPKLGPLIRYKLSQEYHTVEWVADPELVMEYVQQTYYDLYILDWMMQKKSGL 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-- 117 ++ + +R + TP++ LTARD++DDRV GL+ GA+DYL+KPF+F EL AR+ A R+ Sbjct: 61 ELCEEIRASNDQTPILMLTARDAIDDRVTGLNRGADDYLIKPFAFEELFARIHALTRRIP 120 Query: 118 -HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 T E +G+ +D ++H V R+ +TLT+KEFQLL +++ R I + + Sbjct: 121 VSMHQEQTCEYAGITLDRLTHEVYREGQLLTLTKKEFQLLDFFLRHTEKVLTRDQIVNYV 180 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 WG++ N VD AI+ LR KVD+ F KLI +RG+GY Sbjct: 181 WGLDATITPNAVDAAIKLLRKKVDEGFSHKLIHNVRGVGYRL 222 >UniRef50_A4AF30 Two component transcriptional regulator, winged helix family protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AF30_9ACTN Length = 241 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 87/229 (37%), Positives = 122/229 (53%), Gaps = 10/229 (4%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKD-DYALIILDIMLPGMD- 58 MK+L+IED+ R + + + L EAGY D G+ D Y L++LD+MLPG+D Sbjct: 1 MKVLIIEDDVRLADVIRRSLGEAGYATHVAHDAPSGIEAFEVDVTYDLVVLDLMLPGLDV 60 Query: 59 ------GWQILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARV 111 G + + +R P++ LTA D + +V GLD+GA+DYLVKPF ELLARV Sbjct: 61 AGDEPAGMTVCRRIRELDTNVPILMLTALDGMRTKVEGLDAGADDYLVKPFHLVELLARV 120 Query: 112 RAQLRQH-HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRT 170 RA LR+ A L + G+ +D+ + + RD I LT KEF +L L AG I+ T Sbjct: 121 RALLRRSPQAQAPVLTVRGVALDASTRTAERDGRRIQLTAKEFAVLEYLMRNAGRIVSST 180 Query: 171 VIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 + W N++ +N V IR LR K+ +I T RG GY Sbjct: 181 ELIDHAWDSNYEGFSNVVQTYIRYLRQKLTAGGEPDVIETRRGSGYVIE 229 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 292 bits (750), Expect = 4e-78, Method: Composition-based stats. Identities = 88/229 (38%), Positives = 128/229 (55%), Gaps = 10/229 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL+++D + V G+ + G D L + Y L+ILDI LPG+DG+ Sbjct: 3 RILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFG 62 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 +L+ +R + PVI LTAR DRV GL+ GA+DY+VKPFS EL+ARVRA LR+ Sbjct: 63 VLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTAE 122 Query: 121 LN--------STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 + + SGL++D+ + ++ +TL KEF LL LAS G++ R V+ Sbjct: 123 ASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREVL 182 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFVA 220 ++WG + D TVDV IRRLR+K+ + LI T G+GY F+ Sbjct: 183 LGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFIE 231 >UniRef50_C0Z6C7 Two-component response regulator n=3 Tax=Bacillales RepID=C0Z6C7_BREBN Length = 230 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 77/218 (35%), Positives = 132/218 (60%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 +KILL++D +++ GL G+ + DG + + + + ++ILD+M+PGMDG+ Sbjct: 10 IKILLVDDEPTILQFLEMGLENEGFQVLTAQDGMNAVTMVKEHQPHVVILDVMMPGMDGF 69 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 ++ + L+ + I LTAR+ V+DRV+GL GA+DY++KPFSF ELLAR+ A++R H+ Sbjct: 70 EVCRMLKKIQNVATIMLTAREDVEDRVKGLTLGADDYMIKPFSFEELLARIHARIRNHYP 129 Query: 121 -LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 L S + + ++D ++ D + L+ E+ LL L + G ++ + +I +WG Sbjct: 130 HLLSKVHLGPFQIDDRRKEITYDGTLLELSPTEYSLLKYLVTNHGLVLSKPMILDNVWGY 189 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 +F + N V+V IR LR K++D ++I T+RG GY Sbjct: 190 DFGGEENIVEVYIRSLRDKLND-RQHRIIRTLRGAGYR 226 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 77/229 (33%), Positives = 122/229 (53%), Gaps = 11/229 (4%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 ++IL+++D+++ VT L+ GY + + DG GL + + +ILD+M+P MDG+ Sbjct: 11 IQILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDGF 70 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH-- 118 ++L+ LR PV+ LTA DR+ GL+ GA+DYL K FS ELLAR+RA R+H Sbjct: 71 EMLKQLRKQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHRL 130 Query: 119 --------HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRT 170 ++TL L + + + + LT E+ LL LA ++ R Sbjct: 131 SMDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARVLSRD 190 Query: 171 VIASEIWGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSF 218 + + G ++D +VDV I LR K+ +DP + I T+R +GY F Sbjct: 191 QLLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMF 239 >UniRef50_Q97LA9 Response regulator (CheY-like receiver domain and HTH DNA binding domain) n=1 Tax=Clostridium acetobutylicum RepID=Q97LA9_CLOAB Length = 221 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 85/221 (38%), Positives = 123/221 (55%), Gaps = 2/221 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M +L++ED++ + +GL + D DG DGLY + Y +ILDI LP MDG Sbjct: 1 MHLLIVEDDEELSILLKKGLKQYNCTCDISHDGEDGLYNLEINSYDAVILDINLPKMDGI 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-H 118 + + +R TPV+ LTAR DDRV GLDSGA+DYL KPF F EL AR+ A +R+ + Sbjct: 61 TVCRKMRGKGISTPVLMLTARTDTDDRVLGLDSGADDYLGKPFEFKELRARLHALIRRNY 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + ++ ++I L +D+ + SV ITLT +E+ +L LL I+ I +WG Sbjct: 121 NKPSNEIKIKDLNIDTKAKSVKVGEKLITLTAREYDILELLCYNYPNIVSAEEIIEHVWG 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 N + +N + V I LR K+ E LI T++G GY Sbjct: 181 DNDNQFSNVIRVHIANLRRKIKCSGGETLIETLKGKGYRLC 221 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 80/226 (35%), Positives = 129/226 (57%), Gaps = 9/226 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+I+D + + L + G+ + ++G L L + LIILD++LP +G + Sbjct: 5 KILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDTNGLE 64 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + Q LR ++P++ L+ + + D++ GL G +DY+ KPFS SEL+AR+ A LR++ L Sbjct: 65 LCQNLRKITESPILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRRNRIL 124 Query: 122 N--------STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 S L I+GL +D ++++ D+ + LT KEF++L LL+ + T + Sbjct: 125 TNQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFSLTQLY 184 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 IWG++ DT TV V I LR K++ DP KLI TI+G+GY Sbjct: 185 DHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKL 230 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 292 bits (749), Expect = 6e-78, Method: Composition-based stats. Identities = 82/220 (37%), Positives = 121/220 (55%), Gaps = 3/220 (1%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+IED+ + GY + +DG GL LAL ALI+LD+MLP ++G++I Sbjct: 7 ILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNGYEI 66 Query: 63 LQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + LR K + P+I LTA+ D V GL GA+DY+ KPFS ELLARV A LR+ Sbjct: 67 CRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRRQRKQ 126 Query: 122 NSTL-EISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 T+ R D+ + ++ R+ + L+ KEF LL L + AG + R I S +WG + Sbjct: 127 TGTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMSTVWGYD 186 Query: 181 FDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFV 219 ++D + LR K++ DP +++ T+R GY F Sbjct: 187 SRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKFE 226 >UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z8Q7_STRSW Length = 251 Score = 292 bits (749), Expect = 6e-78, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 117/224 (52%), Gaps = 8/224 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+++D + + +T L GY + A + GR L + D LI+LD+ LP + G++ Sbjct: 28 RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLGGFE 87 Query: 62 ILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + +TLR PV+ LT VDDRVRGLD G +D++ KPF E+ ARVRA LR+ Sbjct: 88 VCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRRSGG 147 Query: 121 LNS-----TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 L +++D+ +H V + + LT EF LL L G ++ R I Sbjct: 148 GRPAPDRNRLRAGAIQLDADAHQVWAADRPVDLTTTEFALLRYLMENPGRVLSRGQIQER 207 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 +W + + VD I LR K+ +P + LI T+RG+GY Sbjct: 208 VWNHRDEG-SGVVDTYIYYLRRKLGEPG-QSLIRTVRGVGYQLC 249 >UniRef50_C6D1N2 Two component transcriptional regulator, winged helix family n=3 Tax=Bacillales RepID=C6D1N2_PAESJ Length = 232 Score = 292 bits (749), Expect = 6e-78, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 126/228 (55%), Gaps = 10/228 (4%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+L++ED+ +T L GY + +DG L A +IILDIM+P M+G+ Sbjct: 1 MKVLVVEDDFSISSAITYALEREGYTVRTAADGEKALEKAEVFKPDVIILDIMMPKMNGY 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH- 119 ++ + L ++ V+ LT ++ + D+V GL+ GA+DY+ KPF E+LARV+ R+ H Sbjct: 61 EVFRKLNQKERPGVLLLTVKNDIVDKVLGLELGADDYMTKPFDIREVLARVKVLYRRSHF 120 Query: 120 -------ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 T E+ GL ++ S +V D + LT KEF LL LA ++ R V+ Sbjct: 121 TTFKNSEIEKVTTEMGGLSIEPYSRTVRMDGQELDLTLKEFDLLVELACNPDQVYSRKVL 180 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 ++W I++ T TVD+ I+RLR K+ LI TI G+GY F++ Sbjct: 181 LKKVWDIHYAGGTRTVDIHIQRLRKKLGR--WHGLIQTINGIGYKFIS 226 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 292 bits (748), Expect = 7e-78, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 126/224 (56%), Gaps = 7/224 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL++ED+ ++ L GY + DGR GL AL + L++LD+MLP ++G+++ Sbjct: 8 ILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELNGFEV 67 Query: 63 LQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH-- 119 L+ LR + TPV+ L+A+ D++ GL+ GA+DY+VKPF ELLAR++A LR+ + Sbjct: 68 LKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRRRYPS 127 Query: 120 ---ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + + +D + +V+R + LT +EF+LL + G R + S Sbjct: 128 AGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTREELLSGA 187 Query: 177 WGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFV 219 WG +++ TVD +R+LR K + DP + T+RG+GY F Sbjct: 188 WGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRFE 231 >UniRef50_Q52990 Phosphate regulon transcriptional regulatory protein phoB n=193 Tax=cellular organisms RepID=PHOB_RHIME Length = 227 Score = 292 bits (748), Expect = 8e-78, Method: Composition-based stats. Identities = 80/224 (35%), Positives = 122/224 (54%), Gaps = 5/224 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KI ++ED + + L G+ +D + G + + L+ILD MLPG+ G + Sbjct: 4 KIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVSGIE 63 Query: 62 ILQTLRTAKQT---PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 + + LR +T P+I LTAR +RVRGL +GA+DY+VKPFS EL+ARV+A LR+ Sbjct: 64 LCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRRA 123 Query: 119 --HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 L++ L + +D +H V R + + L EF+LL L S G + R+ + + Sbjct: 124 KPEVLSTLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGV 183 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 WG + D TVDV + RLR ++ +I T+RG GYS + Sbjct: 184 WGHDIYVDERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSLES 227 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 292 bits (748), Expect = 8e-78, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 121/227 (53%), Gaps = 6/227 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D + + LS+ GY I +G++ L + LIILD+M+P MDGW+ Sbjct: 4 KILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMDGWE 63 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH-- 118 + + +R P++ LTAR D+V+GLD GA+DYL KPF EL+ARV A LR+ Sbjct: 64 VCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRAVV 123 Query: 119 --HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 L L+MD H V + + LT KEF+LL LL ++ R + +I Sbjct: 124 NQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQLLLKI 183 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPF-PEKLIATIRGMGYSFVAVK 222 WG++F D TVD I+ +R K+ +I T+ G+GY + Sbjct: 184 WGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKLKEID 230 >UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCX3_9FIRM Length = 228 Score = 292 bits (748), Expect = 8e-78, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 128/222 (57%), Gaps = 4/222 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L++ED++ ++ + L+ Y + +G+D + L ILD+MLPGM+G+ Sbjct: 3 RVLIVEDDENIRQLLKLTLASFNYELVDFENGKDAYDYLQDNKVDLAILDLMLPGMNGYD 62 Query: 62 ILQTLRTA---KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 IL+ +R+ K PVI L+A+D D++ GLD GA+DYL KPFS EL AR+R+ LR+ Sbjct: 63 ILKFIRSKASLKDLPVIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLLRRS 122 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 ++I GL +D V+ + LT KEF+LL LA G + R + ++IWG Sbjct: 123 KKDERLIQIHGLCIDLDKRIVTIREEPVELTYKEFELLKYLAKNEGRAVSREELINQIWG 182 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 +F ++ T+DV I LR K+ + + I ++R +GY V+ Sbjct: 183 YDFIGESRTLDVHINSLRKKLGNEYAH-WIQSVRQVGYRLVS 223 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 292 bits (748), Expect = 8e-78, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 125/226 (55%), Gaps = 9/226 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL++ED+ + + + + +++V+DG L A D+ LI+LD+ +P ++G + Sbjct: 9 QILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLNGVE 68 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + + LR K TP+I +TA+ D+V GL+ GA+DY+ KPFS EL AR +A +R+ A Sbjct: 69 VCRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSDAA 128 Query: 122 NS--------TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 N L+ L+++ V+ + I L+ KEF LL LLA+ G R+ + Sbjct: 129 NQQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRSELL 188 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 IWG NF +TV+ I RLRAK++ D I T G+GY F Sbjct: 189 DVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRF 234 >UniRef50_Q1LCD6 Two component transcriptional regulator, winged helix family n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LCD6_RALME Length = 225 Score = 292 bits (748), Expect = 9e-78, Method: Composition-based stats. Identities = 86/222 (38%), Positives = 131/222 (59%), Gaps = 3/222 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL++D+Q+ + +GL E GY ++ ++L+ILD MLPG G Sbjct: 1 MRILLVDDDQKAARLLARGLQEEGYDVETAHSVDVAAAH-NCYAFSLLILDWMLPGKSGV 59 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + + LR +TP++ LTARD+++DR+ GLD+GA+DYL KPF F ELLA VRA LR+ Sbjct: 60 EFCRELREQGVRTPILMLTARDAINDRITGLDTGADDYLTKPFVFEELLAHVRALLRRVE 119 Query: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 A + + ++ L +D + V+R + LT KE+ +L LL + AGEI+ R +A IW Sbjct: 120 LAQPAPITLNDLVIDPQTRGVTRAGARLDLTPKEYAILILLVTHAGEIVSRAQLAEHIWH 179 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 + + N +DV ++ LR K+D P LI T+RG G+ Sbjct: 180 ADLIAIDNLIDVHMKNLRRKLDPPGMAALIQTVRGQGFRISP 221 >UniRef50_B4WP26 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WP26_9SYNE Length = 676 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 123/226 (54%), Gaps = 4/226 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED++ + + + L++ Y++D G G L +Y LIILD++LP +DG Sbjct: 1 MRILLVEDDESVAKILHKVLTDEHYIVDVAYTGHIGWQLVSSFNYDLIILDVLLPELDGI 60 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + Q LR + T PV+ +TA D +++ GL++GA+DY+ KPF ELLARVRA LR+ Sbjct: 61 KFCQQLRAQEYTLPVLFVTALDDSSEKIAGLNAGADDYITKPFELEELLARVRALLRRGK 120 Query: 120 ALN--STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 +TLE GLR++ S ++ N ++LT KE +L L + R I +W Sbjct: 121 TSVVLTTLEWEGLRLEVNSRELTYRNNKLSLTPKEHAMLELFLRNPAQAFSREAIIDNLW 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSFVAVK 222 + TV ++ LR K+ LI T+ G+GY ++ Sbjct: 181 SYSDAPGEETVTSHMKGLRRKLRTVGAPADLIETVYGVGYRLKPIE 226 Score = 75.5 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 3/121 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL ++D+ + + + L+ Y I + + ++ L++LDI +P G + Sbjct: 540 KILAVDDDSQLLQTLKTRLALENYQIVTLDKPLEFWKTLQDENPDLLLLDISMPQFTGIE 599 Query: 62 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 + QT+R + P++ TA + +G ++ + K S ++LLA + Q+++ Sbjct: 600 LCQTVRRSPAWRHLPIVFFTAHAEPHLQQAAFKAGGDNLIEKSLSDAQLLAHLEHQMKRS 659 Query: 119 H 119 + Sbjct: 660 Y 660 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 81/241 (33%), Positives = 122/241 (50%), Gaps = 22/241 (9%) Query: 1 MK--ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDD-YALIILDIMLPGM 57 MK IL+++DN E + L G+ + + G D L L + + LI+LDIM+P M Sbjct: 1 MKDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNM 60 Query: 58 DGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 G+++ +R P++ L+A+ D+V G + GA+DY+ KPF ELLAR+RA LR+ Sbjct: 61 SGYELCSQIRREWDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLRR 120 Query: 118 HHALN----------------STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLAS 161 + + + L+ L + ++SV N I L+ KEFQLL LA Sbjct: 121 YERIRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCNQKIELSTKEFQLLTFLAE 180 Query: 162 RAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 AG + R I +WG + NTV V I+ LR K++ + I T G GY F+ Sbjct: 181 NAGIVFTREQIYDRVWGYGY-GSLNTVTVHIKNLREKLE--TERQFIKTQWGTGYVFIGE 237 Query: 222 K 222 K Sbjct: 238 K 238 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 123/222 (55%), Gaps = 8/222 (3%) Query: 5 LIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQ 64 L+ED+ E V L++ G+ I DG +G+ L + Y L++LDIMLP ++G L+ Sbjct: 2 LVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFLK 61 Query: 65 TLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH------ 118 +R PV+ ++A+D D+ GL GA+DY+ KPFS EL ARV+A +R+ Sbjct: 62 IIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYSAE 121 Query: 119 -HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 A+N + I L +D + SV ++ + LT E+QLL L AS ++ + I +W Sbjct: 122 EPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIYRSVW 181 Query: 178 GINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSF 218 + D N ++V +RRLR K+ DDP + I T+ G+GY Sbjct: 182 NEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223 >UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacillus RepID=A0RCN7_BACAH Length = 247 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 75/226 (33%), Positives = 123/226 (54%), Gaps = 9/226 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+++D+Q +V L + G+ + + +G + L + + L ILDIM+P MDG ++ Sbjct: 21 ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDGIEL 80 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH---- 118 + +R P++ L+A+ S D+V G +GA+DY+VKPFS E +ARV+AQLR++ Sbjct: 81 CRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYFN 140 Query: 119 ----HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 + + I GL +D VS +V +I LT+ E+ +L+L+A+ + I Sbjct: 141 QNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFTIEEIYE 200 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFV 219 +W NTV V I RLR K+++ P K I + G+GY Sbjct: 201 SVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 246 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 19/236 (8%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 I++ +D + + + L G+ + +G + + L + L++LD+M+P +DG + Sbjct: 4 NIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVDGLE 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH--- 118 + +R TP+I LTAR DR+ GL GA+DY+ KPFS EL+ RV LR+ Sbjct: 64 VCDLIRQTDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAGWR 123 Query: 119 ---------------HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRA 163 A + + GL + VS + LT KEF LL LLA Sbjct: 124 SEASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLHLLAMYP 183 Query: 164 GEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 G++ R+ + +++W I FD DT TV V +RRLR K++ +P I T+ G+GY Sbjct: 184 GKVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKL 239 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 115/220 (52%), Gaps = 4/220 (1%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL++ED + E + L AG+ + G ++ L++LDIMLPG DG ++ Sbjct: 7 ILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPGKDGMEV 66 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 + LR+ Q P+I LTAR DR+ GL+ GA+DY+ KPFS E++ARV+A LR+ + Sbjct: 67 CKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSNTPQ 126 Query: 123 ST---LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 + + +D S VS S+ LT EF +L ++ SR + R + G Sbjct: 127 EESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFSRNELLDLAIGS 186 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSF 218 F+ T+D IR LR K+ P+ + I +I G GY F Sbjct: 187 QFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKF 226 >UniRef50_C4L2J9 Two component transcriptional regulator, winged helix family n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L2J9_EXISA Length = 221 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 80/220 (36%), Positives = 125/220 (56%), Gaps = 3/220 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL++ED+ V + +AG+ + +DG G L I+DIMLPG+DG Sbjct: 1 MRILIVEDDPSILRLVKETFEDAGHEVLTATDGNTGEELFTTQPIDAAIVDIMLPGLDGR 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH- 119 ++ + L+ PVI LTA D +D+ +G + GA+DY+ KPF ELL R++A R++ Sbjct: 61 ELCRRLKATLDIPVILLTALDEWEDKRQGFELGADDYVTKPFIPEELLFRLQAVSRRYQR 120 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 + S ++ LR+D + V+ + L +KEF+LL+ LAS G + R + +WG Sbjct: 121 SAASQIQAGPLRLDLREYEVTLEGQLFYLPKKEFELLFQLASFPGRVYRREELIELVWGF 180 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 +F+ D TVDV I+RLR + D P I T+RG+GY+ Sbjct: 181 DFEGDERTVDVHIKRLRNRFDHPALT--IRTVRGVGYALE 218 >UniRef50_B1ZS16 Two component transcriptional regulator, winged helix family n=3 Tax=Verrucomicrobia RepID=B1ZS16_OPITP Length = 265 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 87/220 (39%), Positives = 133/220 (60%), Gaps = 2/220 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL++ED +R ++V + L+E Y V + + + + ++LD+ LP DG Sbjct: 45 MKILVVEDERRVGQFVEKALTEQNYTARLVRTCAEARDVLAESTFDAVVLDLGLPDGDGL 104 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +L+ R + PV+ L+ARD+V DRVRGL+ GA+DYL KPFS E++ARVR+ LR+H Sbjct: 105 DLLREWRASGFNEPVLVLSARDAVGDRVRGLNMGADDYLPKPFSVDEVVARVRSLLRRHA 164 Query: 120 ALNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + +T L +RMD + SV+ + LT +E+ LL L ++ RT+IA ++W Sbjct: 165 GVKTTVLTHGPVRMDLLGRSVTCAGRPVELTSREYALLELFLQNPRRVLTRTLIAEKVWE 224 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 ++D +TN +DV +RRLR K++ P LI TIRG GY Sbjct: 225 ASYDLETNLIDVYVRRLRQKLEAPGQPPLIKTIRGTGYQL 264 >UniRef50_B2IZ13 Sensor protein n=11 Tax=Cyanobacteria RepID=B2IZ13_NOSP7 Length = 989 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 114/226 (50%), Gaps = 3/226 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL++ED+ +T L+ Y ++ +DG DY LI+LD++LP +DG Sbjct: 1 MKILIVEDDGLNAYTLTNLLTNQNYAVEVATDGDAAWDCIQAYDYDLILLDVVLPKLDGI 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + + +R+ Q P++ +T R+S ++ GLD+GA+DYLVKPF EL+AR+RA LR+ Sbjct: 61 SLCRKIRSNNLQMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALLRRPA 120 Query: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 LE LR+D S + LT KEF LL L + + +I +W Sbjct: 121 VTSPPVLESGKLRLDPSSCEAVYARNLLPLTPKEFALLELFLRNSRRVFSCGMILEHLWS 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSFVAVKK 223 V I+ LR K+ L+ T+ G+GY +++ Sbjct: 181 YEDTPQEEAVRTHIKGLRQKLKAVGAPGDLVETVYGIGYRLKPLEE 226 Score = 91.3 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 7/115 (6%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D+ + Q + LS G A+ + ++ILD+ LP ++G + Sbjct: 397 KILVVDDDPQIQALLQTLLSPWGLRAIALENPLQFWETLEAVAPDMLILDVELPYINGIE 456 Query: 62 ILQTLRTA---KQTPVICLTARDSVD--DRVRGLDSGANDYLVKPFSFSELLARV 111 + + +R + P++ LT + ++V GA+D++ KP EL+ R+ Sbjct: 457 LCRLVRNDSHWSELPILFLTVHSDAEMVNQV--FSIGADDFVSKPIVGPELVTRI 509 >UniRef50_C9ZA01 Putative two-component system response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9ZA01_STRSW Length = 248 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 123/224 (54%), Gaps = 8/224 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +L++ED+ + +T L AGY + G+ ++ A + LI+LD+ LP +DG+ Sbjct: 14 NVLVVEDDPSIRTLLTSALHAAGYSVSTADTGQTAMFEAGRGQPDLIVLDVGLPDIDGFA 73 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + + LR TPV+ LTAR V+DR+ GL SG +DY+ KPF E+L R+RA LR+ Sbjct: 74 VTRHLRAEGVYTPVLFLTARTDVEDRIIGLSSGGDDYVTKPFHVQEVLLRIRAILRRSDM 133 Query: 121 LNS------TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 S L L +D +H V R + I L+ EF+LL L ++ ++ + I S Sbjct: 134 PPSGGTRRPPLRYEDLELDQQTHEVRRAGLPIQLSPTEFRLLVCLLAQPERVVGKKEILS 193 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 E+W +F D VD +R LR K+D F +LI T+RG+GY Sbjct: 194 EVWHYDFAGDARIVDTYVRNLRRKIDR-FEPQLIQTVRGVGYCL 236 >UniRef50_Q2JX56 DNA-binding response regulator n=29 Tax=Cyanobacteria RepID=Q2JX56_SYNJA Length = 246 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 81/229 (35%), Positives = 122/229 (53%), Gaps = 7/229 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDD---YALIILDIMLPGMD 58 +ILL++D + + Q L G+ +D +G L K Y L++LD MLPG+ Sbjct: 3 RILLVDDEVELADSLAQHLRREGHSVDVAYEGNSAWELLQKPPAPPYDLLVLDWMLPGLS 62 Query: 59 GWQILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 G + Q +R + TP++ LTA+D++DDRV GLD+GA+DYLVKPF ELLARVRA LR+ Sbjct: 63 GLSLCQQVRQVDRATPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRR 122 Query: 118 HHALN---STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 L+I L +D + R I L++KEF+LL + G+++ I Sbjct: 123 AAGPGEGIPRLQIGDLELDRENQVAYRQGRMIHLSQKEFRLLEYFMAHPGQLLTHEQIYE 182 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 +W +N + +R LR ++ P +LI + G GY F V + Sbjct: 183 RVWAGEDPPSSNVLAAQVRLLRRRLRLPGSPELIHAVYGKGYRFGPVAE 231 >UniRef50_B4WSX3 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WSX3_9SYNE Length = 640 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 3/225 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL++D+ + + + L + YV+D +DG Y IILD+ LP ++G Sbjct: 27 MRILLVDDDAALMDILAEQLIKQRYVVDIATDGESAEECVNLFSYDFIILDMGLPDIEGI 86 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-H 118 + Q LR K T P++ LTA D+ +V+ L++GA+DY+VKPF F EL AR+RA R+ + Sbjct: 87 SLCQRLRQQKITSPILMLTAEDNSKAKVKALNAGADDYVVKPFDFEELFARIRALRRRDN 146 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + L + L+ LR+D + V + + +T KE+ +L L ++ I +W Sbjct: 147 NTLAAVLQQGDLRVDPNTFEVFYQDRPLRVTPKEYTMLELFLRHPNQVFSIDAIIDNLWS 206 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGYSFVAVK 222 + V ++ LR K+ K I T+ G+GY A+K Sbjct: 207 FEDPPSEDAVRTHVKGLRQKLKAGGAPKDFIQTVYGLGYRLKAIK 251 Score = 80.9 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 59/127 (46%), Gaps = 3/127 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K++ I+D+ + + LS G+ A+ + L+++D+ +P +G + Sbjct: 513 KVVAIDDDPQVLALLQTILSPWGFQTTALENADRLFDTLESVRPDLLLIDVEMPETNGLE 572 Query: 62 ILQTLRTA---KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 I + LR +Q P++ L+ D + + + GA+D++ K +EL R+ +L++ Sbjct: 573 ICRVLRADERWQQLPILFLSVHDEDHTQHQAFNVGADDFISKTTMATELPTRLINRLKRT 632 Query: 119 HALNSTL 125 L Sbjct: 633 GRAVPAL 639 >UniRef50_B4DAQ3 Two component transcriptional regulator, winged helix family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ3_9BACT Length = 230 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 92/224 (41%), Positives = 135/224 (60%), Gaps = 5/224 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL++ED+ R +V +G + GY+ + SDG DGL + ++D+MLP MDG Sbjct: 7 MRILVVEDDSRIASFVAKGFKQNGYLAEISSDGEDGLQKLQTAPFDAAVIDLMLPKMDGL 66 Query: 61 QILQTLRTAKQTP--VICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ- 117 +++ +R K TP ++ L+A+ SV+D+VR L SGA+DYL KPF+ SELLARV A +R+ Sbjct: 67 SLIERIRKGK-TPVAIVVLSAKHSVEDKVRCLRSGADDYLQKPFAISELLARVEAIVRRV 125 Query: 118 -HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 A LE +G+ +D ++H R+ I L +EF LL LL G + + + + Sbjct: 126 SREAEVERLESAGVEIDLLAHIAKREGRRIDLQPREFALLELLVRNRGRALTKMQLLERL 185 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 W +FD TN VDV + RLR K+D F KLI T+RG+GY F Sbjct: 186 WDYSFDPQTNVVDVLVCRLRNKLDRGFDTKLIHTLRGIGYVFRP 229 >UniRef50_C6LI81 DNA-binding response regulator DltR n=2 Tax=Clostridiales RepID=C6LI81_9FIRM Length = 248 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 91/222 (40%), Positives = 130/222 (58%), Gaps = 4/222 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M IL+IED QE + L + GY D SDG GL LAL D Y +I+LD+MLPG+ G+ Sbjct: 20 MNILIIEDELHLQEALAASLKKEGYQTDCASDGISGLELALSDRYDVILLDLMLPGLGGY 79 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 Q+L+ LR K ++ VI L+A+ ++D++ GLD GA+DYL KPF EL AR+RA R+H Sbjct: 80 QVLKQLRREKTESAVIILSAKSELEDKIAGLDFGADDYLTKPFQMKELFARIRAVTRRHG 139 Query: 120 AL-NSTLEISGLRMDSVSHSVSRDNISITLT--RKEFQLLWLLASRAGEIIPRTVIASEI 176 + L L ++ + ++S S TLT KEFQL+ L ++I R+ I +I Sbjct: 140 EVVRDELVFQDLYLNIRTFTLSSSATSHTLTLGSKEFQLMEYLMRNPKQVISRSRITEKI 199 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 WG + + + N VDV I LR K+ I +RG+GY+ Sbjct: 200 WGYDSEVEYNNVDVYISFLRKKLKHTGAHVEIRAVRGIGYTL 241 >UniRef50_B4WG55 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WG55_9SYNE Length = 636 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 119/224 (53%), Gaps = 3/224 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++LL++D+ +T L+ Y++D V+DG G A DY L++LD MLP + G Sbjct: 1 MRVLLVDDDNALASLLTSQLAAHNYIVDHVADGETGWAYASTFDYDLVVLDWMLPQLSGV 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 + Q LR P++ LT ++ +++ GL++GA+DY+VKPF ELLAR+R LR+ Sbjct: 61 HLCQRLRRQGCGVPILLLTVKNEQRNKIEGLEAGADDYVVKPFDMDELLARIRVLLRRTP 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 H L L++D +S V +TLT KE+ LL L ++ TV+ ++W Sbjct: 121 HETEPVLIWGNLQLDPISTQVHYSGQLVTLTAKEYSLLELFLRSPHQVYSATVLLGKLWS 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPF-PEKLIATIRGMGYSFVAV 221 TV +RRLR K+ LI T+ G+GY ++ Sbjct: 181 SQEFPSEATVRSHLRRLRQKLSQAGAAPDLIETVHGLGYRLKSL 224 Score = 83.3 bits (206), Expect = 5e-15, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 62/127 (48%), Gaps = 11/127 (8%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KI++++D+ + V Q L + I +++ + L + L++ D+ +P ++G++ Sbjct: 510 KIMIVDDDAHYLKQVVQLLHPWNFEITPLTNPQRFWTLFNQVLPDLVVFDVEMPQINGFE 569 Query: 62 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP-----FSFSELLARVR- 112 + + LR + P++ L+ + + GA+DY+ KP F+ LL R+ Sbjct: 570 LARVLRSHTKWQHLPIVFLSVHGDAAKQEQAFAIGADDYITKPVHGKAFATR-LLNRLNQ 628 Query: 113 -AQLRQH 118 A +R+ Sbjct: 629 TADIRRP 635 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 343 3e-93 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 343 4e-93 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 342 5e-93 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 338 7e-92 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 337 2e-91 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 336 3e-91 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 336 3e-91 UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC... 336 3e-91 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 335 4e-91 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 335 7e-91 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 335 8e-91 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 334 1e-90 UniRef50_Q2JAC4 Two component transcriptional regulator, winged ... 333 2e-90 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 333 2e-90 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 333 4e-90 UniRef50_Q026B5 Two component heavy metal response transcription... 332 6e-90 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 332 6e-90 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 332 7e-90 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 332 7e-90 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 332 7e-90 UniRef50_C5CE19 Two component transcriptional regulator, winged ... 331 9e-90 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 331 1e-89 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 331 1e-89 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 331 1e-89 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 330 2e-89 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 328 6e-89 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 328 7e-89 UniRef50_C8WRL2 Two component transcriptional regulator, winged ... 328 8e-89 UniRef50_B8G179 Two component transcriptional regulator, winged ... 328 8e-89 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 328 1e-88 UniRef50_B5JD22 Response regulator receiver domain protein n=1 T... 328 1e-88 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 327 2e-88 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 327 2e-88 UniRef50_Q3B3K7 Two component transcriptional regulator, winged ... 327 2e-88 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 327 2e-88 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 327 2e-88 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 327 3e-88 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 326 3e-88 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 326 4e-88 UniRef50_B8DZ94 Two component transcriptional regulator, winged ... 325 5e-88 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 325 6e-88 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 325 6e-88 UniRef50_Q2SPE2 Response regulator consisting of a CheY-like rec... 325 7e-88 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 325 8e-88 UniRef50_Q1IVX4 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 324 1e-87 UniRef50_Q1AZL3 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_P76340 Probable transcriptional regulatory protein yedW... 324 2e-87 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 323 2e-87 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 323 2e-87 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 323 2e-87 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 323 2e-87 UniRef50_C4L340 Two component transcriptional regulator, winged ... 323 3e-87 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 323 3e-87 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 323 3e-87 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 323 3e-87 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 322 5e-87 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 322 5e-87 UniRef50_C7PP48 Two component transcriptional regulator, winged ... 322 6e-87 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 322 6e-87 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 322 6e-87 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 321 1e-86 UniRef50_B9XE94 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_B2J1E6 Multi-component transcriptional regulator, winge... 320 2e-86 UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax... 320 2e-86 UniRef50_C7NAQ8 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_B8I014 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator... 320 3e-86 UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Breviba... 320 3e-86 UniRef50_C7LY45 Two component transcriptional regulator, winged ... 319 4e-86 UniRef50_B1ZVS5 Two component transcriptional regulator, winged ... 319 5e-86 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 318 6e-86 UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepI... 318 7e-86 UniRef50_B8G223 Two component transcriptional regulator, winged ... 318 7e-86 UniRef50_B4WME0 Response regulator receiver domain protein n=1 T... 318 7e-86 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 318 8e-86 UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C... 318 9e-86 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 318 1e-85 UniRef50_C6QDD0 Two component transcriptional regulator, winged ... 318 1e-85 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 318 1e-85 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 318 1e-85 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 318 1e-85 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 317 1e-85 UniRef50_D2QKB6 Two component transcriptional regulator, winged ... 317 1e-85 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 317 1e-85 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 317 1e-85 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 317 2e-85 UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT 317 2e-85 UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanyl... 317 2e-85 UniRef50_D1C280 Two component transcriptional regulator, winged ... 316 3e-85 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 316 3e-85 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 316 3e-85 UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacter... 316 3e-85 UniRef50_C4XS15 OmpR family two-component response regulator n=2... 316 3e-85 UniRef50_B8HL49 Multi-component transcriptional regulator, winge... 316 4e-85 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 316 4e-85 UniRef50_D1BPS5 Two component transcriptional regulator, winged ... 315 5e-85 UniRef50_B7K2S9 Two component transcriptional regulator, winged ... 315 5e-85 UniRef50_Q1IUY4 Two component transcriptional regulator, winged ... 315 6e-85 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 315 6e-85 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 315 7e-85 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 315 8e-85 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 315 1e-84 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 314 1e-84 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 314 1e-84 UniRef50_B8G869 Two component transcriptional regulator, winged ... 314 1e-84 UniRef50_A4J267 Two component transcriptional regulator, winged ... 314 1e-84 UniRef50_A6WIX6 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_A4AL32 Putative two-component system response regulator... 314 2e-84 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 314 2e-84 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 314 2e-84 UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii... 313 3e-84 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 313 3e-84 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 313 3e-84 UniRef50_A0LPJ2 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID... 313 3e-84 UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID... 313 3e-84 UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 313 4e-84 UniRef50_B7K7W8 Multi-component transcriptional regulator, winge... 313 4e-84 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 312 4e-84 UniRef50_A6X2C4 Two component transcriptional regulator, winged ... 312 4e-84 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 312 4e-84 UniRef50_A5FEG3 Two-component transcriptional regulator, winged ... 312 5e-84 UniRef50_D1B9J7 Two component transcriptional regulator, winged ... 312 5e-84 UniRef50_B2IXN9 Multi-component transcriptional regulator, winge... 312 5e-84 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 312 5e-84 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 312 6e-84 UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desul... 312 6e-84 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 312 7e-84 UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=... 312 7e-84 UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostri... 312 8e-84 UniRef50_C0Z5X8 Two-component response regulator n=143 Tax=Firmi... 312 8e-84 UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepI... 311 9e-84 UniRef50_B2JBG7 Two component transcriptional regulator, winged ... 311 9e-84 UniRef50_D1VF89 Two component transcriptional regulator, winged ... 311 9e-84 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 311 1e-83 UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax... 311 1e-83 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax... 311 1e-83 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 311 1e-83 UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=... 310 1e-83 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 310 2e-83 UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID... 310 2e-83 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 310 2e-83 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 310 2e-83 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 310 2e-83 UniRef50_A6CDX9 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actino... 310 3e-83 UniRef50_B2IZ13 Sensor protein n=11 Tax=Cyanobacteria RepID=B2IZ... 310 3e-83 UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=A... 310 3e-83 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_D1C683 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 310 3e-83 UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicut... 309 3e-83 UniRef50_B4U9M6 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_B4WMF1 Response regulator receiver domain protein n=2 T... 309 4e-83 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 309 4e-83 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 309 5e-83 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 309 5e-83 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 309 5e-83 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 309 6e-83 UniRef50_C7IFX1 Two component transcriptional regulator, winged ... 308 6e-83 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 308 7e-83 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 308 8e-83 UniRef50_C6Q063 Two component transcriptional regulator, winged ... 308 8e-83 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 308 9e-83 UniRef50_Q83N47 Two-component system response regulator n=8 Tax=... 308 1e-82 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 308 1e-82 UniRef50_A6TKQ5 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_B4WPA6 Response regulator receiver domain protein n=1 T... 308 1e-82 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 308 1e-82 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_B8I272 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_UPI00016B25CE two component transcriptional regulator, ... 308 1e-82 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 308 1e-82 UniRef50_D2QX61 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 307 1e-82 UniRef50_D2RAW2 Response regulator receiver domain protein n=3 T... 307 1e-82 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 307 1e-82 UniRef50_C7PAJ7 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 307 2e-82 UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacill... 307 2e-82 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63... 307 2e-82 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 307 2e-82 UniRef50_C6VX71 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 307 3e-82 UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=B... 307 3e-82 UniRef50_Q8A9Y3 Two-component system response regulator n=8 Tax=... 306 3e-82 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 306 3e-82 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 306 3e-82 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 306 4e-82 UniRef50_A6M1X5 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax... 306 4e-82 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 306 4e-82 UniRef50_C9XJX9 Two-component system response regulator n=108 Ta... 306 5e-82 UniRef50_B5VWD3 Multi-component transcriptional regulator, winge... 306 5e-82 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 306 5e-82 UniRef50_UPI0001B559F0 two-component system, response regulator ... 305 5e-82 UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepI... 305 5e-82 UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID... 305 5e-82 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_Q52990 Phosphate regulon transcriptional regulatory pro... 305 7e-82 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 305 7e-82 UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 T... 305 7e-82 UniRef50_B5D1V8 Putative uncharacterized protein n=2 Tax=Bactero... 305 9e-82 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 305 9e-82 UniRef50_B5W2T9 Multi-component transcriptional regulator, winge... 305 1e-81 UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactob... 304 1e-81 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria... 304 1e-81 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 304 1e-81 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 304 1e-81 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 304 1e-81 UniRef50_D1C5Q5 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 304 1e-81 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 304 1e-81 UniRef50_B4B6S6 Multi-component transcriptional regulator, winge... 304 1e-81 UniRef50_A4CE30 Probable two-component response regulator transc... 304 2e-81 UniRef50_A4SZ97 Two component transcriptional regulator, winged ... 303 2e-81 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_C6LFE5 DNA-binding response regulator CsrR n=2 Tax=Firm... 303 3e-81 UniRef50_UPI00017468BB two component transcriptional regulator, ... 303 3e-81 UniRef50_B4WP26 Response regulator receiver domain protein n=1 T... 303 3e-81 UniRef50_C7I0A5 Two component transcriptional regulator PhoB, wi... 303 3e-81 UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Ta... 303 4e-81 UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotro... 303 4e-81 UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clos... 303 4e-81 UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacte... 302 4e-81 UniRef50_A7HL55 Two component transcriptional regulator, winged ... 302 4e-81 UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostri... 302 4e-81 UniRef50_B4WG55 Response regulator receiver domain protein n=1 T... 302 4e-81 UniRef50_A5VEY8 Two component transcriptional regulator, winged ... 302 5e-81 UniRef50_A5UWJ8 Two component transcriptional regulator, winged ... 302 5e-81 UniRef50_D2PLZ1 Two component transcriptional regulator, winged ... 302 5e-81 UniRef50_B4WSX3 Response regulator receiver domain protein n=1 T... 302 6e-81 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 302 6e-81 UniRef50_C6PQ36 Two component transcriptional regulator, winged ... 302 6e-81 UniRef50_B4VMC7 Response regulator receiver domain protein n=1 T... 302 6e-81 UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Baci... 302 7e-81 UniRef50_C9NWS1 DNA-binding heavy metal response regulator n=1 T... 302 7e-81 Sequences not found previously or not previously below threshold: >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 343 bits (881), Expect = 3e-93, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 128/226 (56%), Gaps = 7/226 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL++ED+ +E + L++ GY ++ DG L +L+ILD+MLPG+DG++ Sbjct: 31 KILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGFE 90 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + + +RT P++ LTAR S D+V GL++GA+DYL KPF ELLAR++A LR+ Sbjct: 91 LCRLIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQTQ 150 Query: 122 NST------LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 NS L+I L + H V R+ +++ + KEF L + + R + + Sbjct: 151 NSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQLLEK 210 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVA 220 +WG ++ T TVDV I LR K++ DP + + T+RG GY F Sbjct: 211 VWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFEE 256 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 343 bits (881), Expect = 4e-93, Method: Composition-based stats. Identities = 79/231 (34%), Positives = 132/231 (57%), Gaps = 9/231 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 +++L+ +D + ++ + + L Y +D DG + L L + Y L+ILD+M+P +DG Sbjct: 4 IRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGI 63 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ--- 117 ++ + LR P++ LTA+D D++ GL GA+DY+ KPFS +E++AR++A +R+ Sbjct: 64 EVCRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFLV 123 Query: 118 -----HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 + + L GL +D + V+ + I+LT KE +LL AS ++ +T + Sbjct: 124 LGSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQL 183 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAVK 222 +W N+ D NTV V IR+LR K++ DP K I T+ G+GY FV K Sbjct: 184 FRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVGEK 234 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 342 bits (879), Expect = 5e-93, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 124/224 (55%), Gaps = 6/224 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D + ++ + L + Y S+G++ L L +D + L++LD+M+P MDG Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA- 120 +R P+I LTAR DR+ GL GA+DY+ KPFS ELLAR+ A LR+ H Sbjct: 67 ACMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHRF 126 Query: 121 ---LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 ++TL I L +D+ S SV I+LTRKEF LL L ++ R + +IW Sbjct: 127 TVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLDQIW 186 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 G ++ + TVD I+ LR K+ + I T+ G+GY F V Sbjct: 187 GADYIGNLRTVDTHIKTLRLKLGEAGGS--IQTVWGIGYKFEEV 228 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 338 bits (869), Expect = 7e-92, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 125/227 (55%), Gaps = 5/227 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +ILL+ED + ++ V L Y + AV DG+D L K + L+ILD+MLP + G + Sbjct: 10 RILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGER 69 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ---- 117 + + +R P+I LTA+ V+DR+ GL+ GA+DYLVKPFS EL+ARVRA LR+ Sbjct: 70 VCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHAD 129 Query: 118 HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 LE L +D H V + LT EF+LL L+ G + R + ++ Sbjct: 130 SEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKVL 189 Query: 178 GINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFVAVKK 223 G +F+ T+D ++ LRAK+ D P K + T+ G+GY F K Sbjct: 190 GYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFEDPTK 236 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 337 bits (866), Expect = 2e-91, Method: Composition-based stats. Identities = 89/220 (40%), Positives = 131/220 (59%), Gaps = 2/220 (0%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL++ED + +++ L GY + V+DG GL A + + LI+LD MLPG+ G I Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 63 LQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + LR P+I LTA+D + DRV GLD+GA+DY+VKPF+ ELLARVRA LR++H Sbjct: 66 CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNHEE 125 Query: 122 -NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 L+ L ++ + V R + I LT KEF LL L S +++ R I +WG + Sbjct: 126 DPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWGYD 185 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 F D+N ++V +R LR K++ ++LI T+RG+GY Sbjct: 186 FMGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVLRD 225 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 336 bits (864), Expect = 3e-91, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 123/227 (54%), Gaps = 6/227 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 IL+++D + + L + G+ + SDGR+ L D+ LI+LD+MLPG+DG Sbjct: 3 HILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGLT 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 I + +R A TP+I LTA+ D++ GL+ GA+DY+ KPF+ EL+AR+RA LR+ A Sbjct: 63 ICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAEAA 122 Query: 122 NS-----TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + L + L + + LT +E+ LL LLA G + R + + Sbjct: 123 SRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDLV 182 Query: 177 WGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFVAVK 222 WG +F D TVDV +RR+R K+ +DP + + T G+GY A Sbjct: 183 WGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEAEP 229 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 336 bits (864), Expect = 3e-91, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 124/229 (54%), Gaps = 7/229 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+L+++D+++ + +T L + GY + DG + + A + +++LD+MLP +DGW Sbjct: 1 MKVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGW 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR---- 116 + + +R P+I LTARD DR+ GL+ GA+DY++KPFS E+LAR+RA R Sbjct: 61 GVCKEIRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQP 120 Query: 117 --QHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 + L++ +D S S++ + LT E++LL L + G++ R + Sbjct: 121 ASRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLIE 180 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFVAVK 222 ++ F+ TVD I+ LR K+ P I TI G+GY V + Sbjct: 181 KVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLVGEQ 229 >UniRef50_B3DZZ9 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=6 Tax=Bacteria RepID=B3DZZ9_METI4 Length = 268 Score = 336 bits (864), Expect = 3e-91, Method: Composition-based stats. Identities = 87/222 (39%), Positives = 134/222 (60%), Gaps = 2/222 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED + ++++ L E G+ +D S G + L + L Y +LDIMLPG DG Sbjct: 46 MRVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGI 105 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +L++LR P++ L+AR D++ GL+SGA+DYL KPFS EL+AR+RA +R+ Sbjct: 106 SVLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTA 165 Query: 120 ALN-STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + S ++ L ++ ++ V R I LT KEF +L LL G + RT + +W Sbjct: 166 GIGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVWN 225 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 +FD TN VDV I++LR K+D+ +KLI T+RG+GY A Sbjct: 226 YHFDPGTNLVDVYIQKLRKKIDEGEEQKLIQTVRGVGYKIEA 267 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 335 bits (862), Expect = 4e-91, Method: Composition-based stats. Identities = 94/233 (40%), Positives = 134/233 (57%), Gaps = 16/233 (6%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL+++D +E ++ L ++GY ++ +DGR L A + L++LDIMLP +DG Sbjct: 1 MQILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGL 58 Query: 61 QILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 ++ + L+ P+I LTA+ DRV GL+ GA+DY+VKPFS ELLARV+A LR+ Sbjct: 59 EVCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRR 118 Query: 118 H----------HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEII 167 +L I GLR+D S+ + +I LT KE++LL LL + G Sbjct: 119 SASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAF 178 Query: 168 PRTVIASEIWGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 219 R + IWG + DT TVDV IR LRAK+ DDP I T+RG+GY F Sbjct: 179 SRDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRFA 231 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 335 bits (861), Expect = 7e-91, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 126/224 (56%), Gaps = 7/224 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+++D + + + L + +D DG + L + Y +I+LDIMLP +DG Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH--- 118 + Q +R P+I LTA+ D++ GLD GA+DY+ KPF+ E+ AR++A LR++ Sbjct: 73 VCQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSSI 132 Query: 119 ---HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 ++ ++ +++D S S+ + I LT KEF LL +LA G++ R + Sbjct: 133 TQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLLKA 192 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 +WG ++ D TVDV +RRLR K++ +P K + T G+GY F Sbjct: 193 VWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYF 236 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 335 bits (860), Expect = 8e-91, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 131/233 (56%), Gaps = 11/233 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D R + + L Y ID +G + + L+ +Y LI+LD+M+PG DG + Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + + +R K TP+I LTA+ +RV+G ++G +DY+VKPFS E++ RV+A LR+ Sbjct: 68 VCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQT 127 Query: 122 N---------STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 + + L S L +D +H V+ D ++LT KE++LL+ LA ++ R + Sbjct: 128 SYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREKL 187 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVDD--PFPEKLIATIRGMGYSFVAVKK 223 E+W F D TVD ++RLR K++ P K I T+ G+GY F + Sbjct: 188 LKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEVGAE 240 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 334 bits (859), Expect = 1e-90, Method: Composition-based stats. Identities = 82/228 (35%), Positives = 127/228 (55%), Gaps = 7/228 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L+++D++ V L G+ +D DG+ G K +Y +ILDIMLP MDGW++ Sbjct: 6 VLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGWEV 65 Query: 63 LQTLRT---AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +R + P+I LTA+ DD++ GL GA+DY++KPFS EL+ARVRA +R+ Sbjct: 66 CHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRRDQ 125 Query: 120 ALNS---TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 LE L +D+ S+ V + + L KEF+LL+LL + R I +I Sbjct: 126 DFKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEKI 185 Query: 177 WGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAVKK 223 WG +F T TVD ++R+R K++ + + LI T+ G+GY F + Sbjct: 186 WGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFEVKNE 233 >UniRef50_Q2JAC4 Two component transcriptional regulator, winged helix family n=90 Tax=cellular organisms RepID=Q2JAC4_FRASC Length = 283 Score = 333 bits (857), Expect = 2e-90, Method: Composition-based stats. Identities = 99/225 (44%), Positives = 138/225 (61%), Gaps = 2/225 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED RT + +GL E GY +D V DG D ++ A + Y I+LD+MLPG+DG+ Sbjct: 30 MRVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDGF 89 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++ + LR A + PV+ LTAR VDDR+RGLD+GA+DYL KPFSF EL AR+RA +R+ Sbjct: 90 EVCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGA 149 Query: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + L I LR+D H V R + L+ KEF LL LL E++ RT I +W Sbjct: 150 VERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVWD 209 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 FD +N VD +R +R K+D P LI T+RG+GY + Sbjct: 210 FAFDGTSNIVDQYVRYVRRKIDIPDGPSLIETVRGVGYRLRTPAE 254 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 333 bits (856), Expect = 2e-90, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 127/223 (56%), Gaps = 5/223 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL ++D+ + + + L + G+ + S G + L A + L+ILD+M+PGMDG++ Sbjct: 4 RILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFE 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 Q L+ ++ P+I L+AR DRV G G +DY KPFS +EL RV+A LR+ Sbjct: 64 TYQKLKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLGEP 123 Query: 122 ----NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + L+ L +D +V+ +N + LT K+F+LLWL+AS + + + +IW Sbjct: 124 KVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDKIW 183 Query: 178 GINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFV 219 +F D NTV V IRRLR KV+ DP + I T+ GMGY F Sbjct: 184 DSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFE 226 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 333 bits (855), Expect = 4e-90, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 128/233 (54%), Gaps = 13/233 (5%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D+ E ++ L + + V DG + + + LI+LD+MLPG+DG++ Sbjct: 6 KILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDGYE 65 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ---- 117 + + +R P+I L+A+ + D+V GL+ GA+DY++KPF EL+ARV+A LR+ Sbjct: 66 VCREVRKTSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRVVPS 125 Query: 118 --------HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPR 169 L + L ++ ++SV+ SI + KE +L + LAS ++ R Sbjct: 126 QSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQVFTR 185 Query: 170 TVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 + IWG + DT TVDV I+RLR K+ D +L +T+ G+GY F K Sbjct: 186 EQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHISWRL-STVWGIGYKFEVKK 237 >UniRef50_Q026B5 Two component heavy metal response transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q026B5_SOLUE Length = 238 Score = 332 bits (853), Expect = 6e-90, Method: Composition-based stats. Identities = 103/224 (45%), Positives = 146/224 (65%), Gaps = 1/224 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL++ED +R +++ +GL AGY +DA G L L DY L++LD MLP MDG Sbjct: 1 MRILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRMLPDMDGL 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 Q+L+ +R+ K PV+ L+AR ++DDRV+GL+ GA+DYLVKPF+F ELLARVRA LR+ Sbjct: 61 QVLEKMRSRKAGPPVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRRGQ 120 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 L++S L +D + V+R +I L KEF +L + G + RT+I +W + Sbjct: 121 PTPERLQVSDLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEHVWDM 180 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 ++D TN VDV IR LR+K+DD F +KLI T+RG+GY A K Sbjct: 181 DYDGLTNIVDVYIRHLRSKIDDRFQQKLIQTVRGIGYMIEAPDK 224 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 332 bits (852), Expect = 6e-90, Method: Composition-based stats. Identities = 73/231 (31%), Positives = 119/231 (51%), Gaps = 9/231 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL++ED + +E + L Y + +G +G + L LIILD+M+P DGW+ Sbjct: 3 KILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGWE 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + +R P+I LTA+ DR+ GL GA+DYL KPFS EL+ RV+ LR+ + + Sbjct: 63 LCGEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGNQV 122 Query: 122 --------NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 + +E L++ + V + LT KEF++L+++A ++ R+ + Sbjct: 123 AIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQLL 182 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVDDPF-PEKLIATIRGMGYSFVAVKK 223 IW + +NTV V + RLR K++ I T+ G+GY F + Sbjct: 183 ELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEPNGR 233 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 332 bits (852), Expect = 7e-90, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 120/227 (52%), Gaps = 8/227 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL+IEDN + G+ + V DG +G ++++ LIILDIMLP MDG Sbjct: 1 MKILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGV 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 I + +R P+I LTA+D+ D+V G + GA+DY+ KPFS L+AR++A +R++ A Sbjct: 61 TICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKA 120 Query: 121 L------NSTLEISGLRMDSVSHSVSRDNISIT-LTRKEFQLLWLLASRAGEIIPRTVIA 173 +E ++ + V + + LT KEF LL+ L ++ R + Sbjct: 121 TGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQLL 180 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 ++WG F D TVDV I+RLR K+ + T+ G+GY F Sbjct: 181 EQVWGYQFYGDERTVDVHIKRLRKKLASEDKP-FLYTVWGVGYKFDE 226 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 332 bits (852), Expect = 7e-90, Method: Composition-based stats. Identities = 84/220 (38%), Positives = 135/220 (61%), Gaps = 1/220 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+I+D+ + + + L+ GY ++ +DG G+ +A ++ L+ILDIMLPG+DGW+ Sbjct: 4 RVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGWE 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 I Q R TP++ L+ARD V+ +V+GL+ GA+DYL KPF+ ELLARV+A LR+ Sbjct: 64 ICQRFRKDNFTPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRRRITA 123 Query: 122 NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINF 181 N ++ S L+MD + V R +TLT +EF LL +++ R I +WG++F Sbjct: 124 NKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVWGLDF 183 Query: 182 DSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 +N ++V I LR K++D ++I T+RG+GY Sbjct: 184 TGGSNVLEVYINMLRQKIEDYGS-RIIHTVRGVGYVLKEQ 222 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 332 bits (852), Expect = 7e-90, Method: Composition-based stats. Identities = 80/232 (34%), Positives = 124/232 (53%), Gaps = 15/232 (6%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK---------DDYALIILDI 52 +IL++ED ++ V L + G+ +D +DGR L ++ L++LD+ Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 53 MLPGMDGWQILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARV 111 MLP ++G + LR P++ L+A+D+ DRV GL+ GA+DYL KPF EL+AR Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 112 RAQLRQHHALNS----TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEII 167 RA LR+ + L GL++ V D+ +TL+ KEF+LL L + Sbjct: 145 RALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRVW 204 Query: 168 PRTVIASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 R + +IWGI+F D+ T+DV IR LR K++ +P + T+RG GY Sbjct: 205 SRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >UniRef50_C5CE19 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE19_KOSOT Length = 228 Score = 331 bits (851), Expect = 9e-90, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 128/225 (56%), Gaps = 3/225 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL++EDN++ E + + L G+++D DG +GL LAL +Y IILDI+LPGM G Sbjct: 1 MKILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGI 60 Query: 61 QILQTLR--TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 +I + LR Q P++ LTA SV++RV GL+ GA+DY+ KPF EL+ARVRA +R++ Sbjct: 61 EICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRN 120 Query: 119 HA-LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 TL+ L M+ + VS + L+ KEF LL L G + R I ++W Sbjct: 121 QVVRQETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKLW 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 F+ +N VDV + LR K+ ++ I T+ +GY Sbjct: 181 ESGFEPRSNIVDVYVLYLRKKLKPFGYDEKIETVHNIGYRLKKED 225 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 83/223 (37%), Positives = 130/223 (58%), Gaps = 5/223 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+IED+ + + L G+ + DG++GL +A Y +I+LD+MLP M G + Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA- 120 + + +R Q P+I LTA+D + D+V G D GA+DY+ KPFS ELLAR++A LR+ Sbjct: 64 VCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKKS 123 Query: 121 --LNSTLEISGLRMDSVSHSVSRD--NISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 E L ++ ++ V RD I L+++EF+LL L G ++ R I E+ Sbjct: 124 VVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILEEV 183 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 WG ++ + N +D+ I+ LR K+D P+ K I T+RG+G+ F Sbjct: 184 WGFDYIGNDNILDLYIKYLRDKIDRPYERKFIQTVRGIGFIFK 226 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 85/226 (37%), Positives = 126/226 (55%), Gaps = 4/226 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KILL+ED++ ++ L++ GY ++ DG + L + L++LDIMLP DGW+ Sbjct: 3 KILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGWE 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH-- 119 + + +R P+I LTA+D D+V GL GA+DY+ KPF ELLAR+ A LR++ Sbjct: 63 VCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQSD 122 Query: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + + + MD V +V + L+ +EF++L LL S G + R +I IWG Sbjct: 123 LSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHIWG 182 Query: 179 INFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAVKK 223 NF + VDV IR LR KV+ DP K I T+R +GY F + Sbjct: 183 ENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQEGNE 228 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 87/224 (38%), Positives = 126/224 (56%), Gaps = 7/224 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D R +E + + L AGYV + DG L L + L+ILD+M+P MDG Sbjct: 74 KILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDGMT 133 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQL-R--- 116 L+ +R TPVI LTAR D++ GL+ GA+DY+VKPFS EL+ARV+A L R Sbjct: 134 CLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTMP 193 Query: 117 QHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + A + T+ L +D+ SH+V ++LT KEF LL LAS G + R I ++ Sbjct: 194 RSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQKV 253 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 W ++ + TVD ++ LR + IAT+ G+GY F Sbjct: 254 WNYDYFGEDRTVDTHVKMLRGHLGK--CRGYIATVWGIGYKFDP 295 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 330 bits (848), Expect = 2e-89, Method: Composition-based stats. Identities = 91/227 (40%), Positives = 124/227 (54%), Gaps = 10/227 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +ILLIED+Q + L Y + SDG +GL+L + LIILDIMLP MDG Q Sbjct: 4 RILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGLQ 63 Query: 62 ILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH- 119 + Q LR TP++ LTA+ S DRV GL++GA+DYL KPFS EL ARV+A LR+ Sbjct: 64 VCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTDM 123 Query: 120 -------ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 + L L +D ++ + ITLT KEF LL +AS G++ R + Sbjct: 124 SQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREKL 183 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 +WG +TV+ I RLR K++ D K + T+ G+GY F Sbjct: 184 LDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 328 bits (844), Expect = 6e-89, Method: Composition-based stats. Identities = 85/228 (37%), Positives = 130/228 (57%), Gaps = 11/228 (4%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+++D R + + L + I S+G++ LA++++YA I+LD+MLP MDG Q+ Sbjct: 5 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGIQV 64 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA-- 120 LR KQTP+I LTA+ +RV G +SGA+DY+VKPFS E++ RV+A LR+ + Sbjct: 65 ATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQSTT 124 Query: 121 -------LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 +E L +D+ +H V DN + LT KE++LL LA ++ R + Sbjct: 125 VEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQLL 184 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVDDPFPE--KLIATIRGMGYSFV 219 E+W F D TVD ++RLR K++ E +I T+ G+GY F Sbjct: 185 KEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFE 232 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 328 bits (843), Expect = 7e-89, Method: Composition-based stats. Identities = 82/229 (35%), Positives = 124/229 (54%), Gaps = 10/229 (4%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M IL+++D Q + + L G+ I +G+D + L ILD+MLP +DG+ Sbjct: 3 MNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGF 62 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + Q +R PVI LTA++ D++ GL GA+DY+ KPF EL+ARV+AQLR+ Sbjct: 63 TLCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFTK 122 Query: 121 LNST--------LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 NS + SGL +D +H + + I+LT KEF +LW+L S G ++ + Sbjct: 123 YNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEEL 182 Query: 173 ASEIWGINFDSDT-NTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFV 219 E+WG + +++ NTV V IR LR K+ K I T+ G+GY Sbjct: 183 FHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIE 231 >UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD Length = 231 Score = 328 bits (843), Expect = 8e-89, Method: Composition-based stats. Identities = 100/225 (44%), Positives = 133/225 (59%), Gaps = 3/225 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED R + Q L E Y +D DG G LAL D Y L ILDIMLP M G Sbjct: 1 MRILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGL 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 IL+ +R A QTPV+ LTA+D+V+DRV GLD+GA+DYLVKPF ELLARVRA R+ Sbjct: 61 DILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRTG 120 Query: 120 ALN--STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + +E R+D + +V+R+ + LT KEFQLL L +++ + VI +W Sbjct: 121 QIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVW 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 G + D N V+ + LR K+D+P I T+RG+GY F Sbjct: 181 GPDADVIGNAVENYVHFLRKKIDEPDLPSYITTVRGVGYMFHPDP 225 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 328 bits (843), Expect = 8e-89, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 126/225 (56%), Gaps = 9/225 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KILL+ED+ QE VT L GY + +G L L K+ L++LD+MLP +DG Sbjct: 3 KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62 Query: 62 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR-- 116 + + +R P+I L+ARD V DRV GL+ GA+DY+ KPFS ELLAR++A+LR Sbjct: 63 VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLREE 122 Query: 117 -QHHALNS-TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 ++ +L L + S+ V+ +TLT KEF+LL + R ++ R + Sbjct: 123 RRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYLLQ 182 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 ++WG DT TVDV I LR+K+ P +I ++RG+GY Sbjct: 183 KVWGYTVSGDTRTVDVHISNLRSKLKSVSP--IIESVRGVGYRLA 225 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 86/234 (36%), Positives = 137/234 (58%), Gaps = 15/234 (6%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D ++ L +AGY + +DG D L L L + I+LD+MLP +DG + Sbjct: 5 KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + + LR K QTP+I +TA++ D+V GL+ GA+DY+ KPFS E+LAR++A +R+ Sbjct: 65 VTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTTP 124 Query: 121 LN-------------STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEII 167 + + + L++D + V+R+ +I+LT KEF+LL R G ++ Sbjct: 125 DEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRVL 184 Query: 168 PRTVIASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVA 220 R I + +WG ++ S+T VD+ I LR K++ DP +LI T+RG GY FV Sbjct: 185 SRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFVG 238 >UniRef50_B5JD22 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD22_9BACT Length = 239 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 96/223 (43%), Positives = 136/223 (60%), Gaps = 2/223 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+LL+ED ++ ++V +GL E GYV++ DG DG A Y +I+LDIMLPG DG Sbjct: 17 MKVLLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIMLPGRDGL 76 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 IL++LR + T PVI +TAR +D+R+ GL+ GA+DYL KPF EL+AR++A R+ Sbjct: 77 SILKSLRKSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSS 136 Query: 120 ALN-STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + S +++ L ++ + V RD + LT +EF LL L G ++ RT I +WG Sbjct: 137 GKSLSMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG 196 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 +FD TN VDV ++RLR KVD LI T+RG GY Sbjct: 197 YDFDPSTNVVDVCVQRLRKKVDAGHDVHLIETVRGAGYRMRKE 239 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 70/220 (31%), Positives = 116/220 (52%), Gaps = 5/220 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L+++D + + V L A + +G + L + + +I++D+M+P MDG+ + Sbjct: 6 VLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDGFTL 65 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ---HH 119 +R P++ LTAR D+V+GL G +DY+VKPFS EL+AR+ A +R+ + Sbjct: 66 CARIREQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAYHNK 125 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 N L L +D V+ D + LT KEF LL LA G++ R + +++WG Sbjct: 126 QKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLLAQVWGY 185 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 ++ + TVD I+ LR K+ I T+ G+GY F Sbjct: 186 DYTGNARTVDTHIKTLRMKLKQAS--DFIQTVWGIGYKFE 223 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 134/226 (59%), Gaps = 9/226 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+++++D + + + L + GY + DG D + L +++ +++LDIMLPG DG + Sbjct: 4 KVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGME 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + + +R + P+I LTA+DS D+V GL+ GA+DY+ KPFS EL+ARV+A LR+H++ Sbjct: 64 VCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQ 123 Query: 122 N--------STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 + + I + + ++S+ + I LT +EF+L L+ G+++ R + Sbjct: 124 PAQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLL 183 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 +WG ++ D TVDV IRRLR K++ DP + I T RG+GY Sbjct: 184 QTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFL 229 >UniRef50_Q3B3K7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteroidetes/Chlorobi group RepID=Q3B3K7_PELLD Length = 232 Score = 327 bits (839), Expect = 2e-88, Method: Composition-based stats. Identities = 88/223 (39%), Positives = 130/223 (58%), Gaps = 1/223 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L+IED ++ +GL E + +D DG GL L + +DY L ++D MLP + G Sbjct: 1 MRLLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDYDLCLIDWMLPKLSGI 60 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++ + LR PVI LTARD++DD V GL +GA+DY+ KPF+F ELLAR+RA+LRQ+ Sbjct: 61 EVCRQLRKAGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLRQNT 120 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 L L +D +H + +TLT KEF LL L + R+ I +W I Sbjct: 121 PTTGPLTAGALWLDPETHRAGCNRHDLTLTPKEFALLEYLLRNLDRVCTRSRIIEHVWDI 180 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 +FD+DT+ +DV + LR K++ LI T+RG+GY + Sbjct: 181 HFDADTSVIDVYVNFLRRKLEAAGCTGLIKTVRGVGYVIRTPE 223 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 327 bits (839), Expect = 2e-88, Method: Composition-based stats. Identities = 93/224 (41%), Positives = 135/224 (60%), Gaps = 5/224 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 IL++ED ++ + L GY + +G +GL A + Y+L++LD+MLPG+ G + Sbjct: 5 HILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLE 64 Query: 62 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 +L+ LR QTPVI LTARDS+ D+V GLD GANDY+ KPF ELLAR+RA LRQ+ Sbjct: 65 VLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGT 124 Query: 121 LNST----LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 L LR++ + V R + + LT +EF LL + +++ R I S + Sbjct: 125 KTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSV 184 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 WG ++ DTN VDV IR +R K+D P+ ++LI TIRG+GY+ Sbjct: 185 WGFDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAIKG 228 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 327 bits (839), Expect = 2e-88, Method: Composition-based stats. Identities = 85/244 (34%), Positives = 132/244 (54%), Gaps = 23/244 (9%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +ILL+ED + V L + GY ++ V+ G + ++DY LIILD+MLPG+DG + Sbjct: 3 RILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDGLE 62 Query: 62 ILQTLRTAK--QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR--- 116 + + +R PVI LTA+ +++ GL+ GA+DY+ KPFS ELLARV+AQLR Sbjct: 63 VCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGRT 122 Query: 117 -----------------QHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLL 159 Q + L + + +N + LT KEF+LL ++ Sbjct: 123 KELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNIM 182 Query: 160 ASRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSF 218 + +G+++ R + +IWG +F DT TVDV IR LR K+ + P L+ T+RG+GY Sbjct: 183 VTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGYRL 242 Query: 219 VAVK 222 ++ Sbjct: 243 KEME 246 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 327 bits (839), Expect = 3e-88, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 122/226 (53%), Gaps = 9/226 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 I++++D + ++ + L GY + +G L L K+ LIILDIM+P MDG + Sbjct: 6 IIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNMDGIEA 65 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 +R K P+I L+A+ D++ GL +GA+DY+ KPF+ EL+ARV++QLR++ N Sbjct: 66 CTKIREEKNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRRYKKFN 125 Query: 123 --------STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 +EI L +++ +H V + LT +EF +L LLA G + I Sbjct: 126 VQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFSIEKIYE 185 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFV 219 +W F NTV V IR+LR K+++ P K + T+ G+GY Sbjct: 186 RVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYKVE 231 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 132/233 (56%), Gaps = 11/233 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D+ E V+ L+ GY + D + L + + + I+DIMLPGMDG++ Sbjct: 29 KILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGFE 88 Query: 62 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ- 117 +++ LR + TPV+ L+A+ D+V GL+ GA+DY+ KPFS E++AR++A R+ Sbjct: 89 LVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRRI 148 Query: 118 ------HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTV 171 + GL +D + V + ++LT EF+LL LA G++ R V Sbjct: 149 QLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRDV 208 Query: 172 IASEIWGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFVAVKK 223 + ++WG ++ DT TVDV IRRLR K+ +DP K I T+RG GY F K Sbjct: 209 LLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGK 261 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 326 bits (837), Expect = 4e-88, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 117/222 (52%), Gaps = 5/222 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +L++ED + L + GY + DG D L A + L+++D MLP + G + Sbjct: 4 HVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSGIE 63 Query: 62 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 + + LR P+I LTAR DRVRGLD+GA+DY+VKPFS +EL AR+RA LR+ Sbjct: 64 VCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLRRI 123 Query: 119 HA--LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 +E + MD V+H V R + I L EF+LL L G + R + + Sbjct: 124 RPGLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLDAV 183 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 WG + + TVDV + RLR +++ I T+R GY+F Sbjct: 184 WGSDVYVEARTVDVHVGRLRKALNNKEERDPIRTVRSAGYAF 225 >UniRef50_B8DZ94 Two component transcriptional regulator, winged helix family n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8DZ94_DICTD Length = 224 Score = 325 bits (836), Expect = 5e-88, Method: Composition-based stats. Identities = 96/224 (42%), Positives = 139/224 (62%), Gaps = 4/224 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK--DDYALIILDIMLPGMD 58 MKIL+IED ++ + +GL + GYV+D DG + Y+ + Y L+ILDIMLP +D Sbjct: 1 MKILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKID 60 Query: 59 GWQILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 G + + LR Q P++ LTA+D V+D++ GL+SGA+DYLVKPFS+ ELLAR+RA LR+ Sbjct: 61 GISLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLRR 120 Query: 118 HHA-LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + + L++ + +D+VS V R +I I LT KEF +L L II + I S + Sbjct: 121 PKNLMPTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQIISHV 180 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 WG D+ +N V+ I+ LR K++ E +I TIRGMGY Sbjct: 181 WGYESDTLSNVVEAHIKNLRKKLERKRDENIIETIRGMGYRIKE 224 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 325 bits (836), Expect = 6e-88, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 117/223 (52%), Gaps = 3/223 (1%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+++D + L AGY + + G +GL +AL ++ LI+LD+MLPGMDG +I Sbjct: 5 ILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGMEI 64 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 LR ++ LTAR DRV GL GA+DYL KPFS EL+ARV A LR+ Sbjct: 65 TARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRGKP 124 Query: 123 ---STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 S + + + +D + + LT EF LL LA ++ R + ++WG Sbjct: 125 VKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKVWGA 184 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 +F VDV + ++R K++ E LI T RG+GY FV Sbjct: 185 DFYGTDRVVDVYVSQVRRKIEALTGENLIRTARGVGYRFVDTP 227 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 325 bits (835), Expect = 6e-88, Method: Composition-based stats. Identities = 81/222 (36%), Positives = 127/222 (57%), Gaps = 3/222 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL+ +D+ +T + + L+ G+ + SDG++ L LAL L+ILD+M+P +DG+ Sbjct: 6 RILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGFA 65 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + +R A P++ LTAR D+V G GA+DY+ KPF +EL+ RV A LR+ L Sbjct: 66 VCGRIRAASAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRMPTL 125 Query: 122 NS--TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 TL L ++ + +V + + LT +EF LLWL+AS G R + + +W Sbjct: 126 PESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESLLARVWHG 185 Query: 180 NFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFVA 220 + +D +TV V IRRLR K++D P + I T+ G+GY F Sbjct: 186 DAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKFDP 227 >UniRef50_Q2SPE2 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=18 Tax=Proteobacteria RepID=Q2SPE2_HAHCH Length = 226 Score = 325 bits (835), Expect = 7e-88, Method: Composition-based stats. Identities = 96/224 (42%), Positives = 147/224 (65%), Gaps = 4/224 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L+IED++ ++++GL E+GYV+DA +G+ GL++A + Y L+++D MLP +DG Sbjct: 1 MRVLVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLVDRMLPELDGL 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +++ LR TPV+ L+A VDDRV+GL +G +DYLVKPFSFSELLAR+ A LR+ Sbjct: 61 SVVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRRSQ 120 Query: 120 ALNST---LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 L+++ L MD ++ +V R+ +SI L +EF+LL G+++ RT++ ++ Sbjct: 121 QQQDVVTTLKVADLEMDLLARTVKRNGLSIDLQPREFRLLEYFMRNPGQVLTRTMLLEKV 180 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 W +FD TN +DV I RLRAK+D F L+ TIRG GY Sbjct: 181 WDYHFDPQTNVIDVHISRLRAKIDKDFETPLLHTIRGAGYVLRE 224 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 325 bits (834), Expect = 8e-88, Method: Composition-based stats. Identities = 85/225 (37%), Positives = 131/225 (58%), Gaps = 6/225 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +I ++ED +R ++ L G+ + +G ++ ++ L++LD+MLPGMDG Sbjct: 6 RIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGMT 65 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 I + +R P+I LTA+D V+D+V GLD GA+DY+ KPF+ EL+AR+R LR+H Sbjct: 66 ICKRVREVSSLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHVPD 125 Query: 122 N------STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 N L++ L M + V D ++ LT+KE+ LL + ++ R I + Sbjct: 126 NGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQILEK 185 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 +WG ++ DTN VDV IR LRAK+DD F EK I T+RG+GY+ Sbjct: 186 VWGYDYSGDTNVVDVYIRYLRAKLDDRFHEKYIYTVRGVGYAVKE 230 >UniRef50_Q1IVX4 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IVX4_DEIGD Length = 225 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 85/220 (38%), Positives = 130/220 (59%), Gaps = 2/220 (0%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L+IED + ++ L+ GY + DG GL + + L+ILD+MLP +DG ++ Sbjct: 7 VLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPVLDGLEV 66 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-HHAL 121 + +R TP+I LTA+D + D+V GLDSGA+DYL+KPFS ELLARVRA LR+ + A+ Sbjct: 67 ARRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPAV 126 Query: 122 NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINF 181 + ++ L M+ + R + L+ KEF+LL LLA G++ R I ++W + Sbjct: 127 TGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW-PEY 185 Query: 182 DSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 +N VDV I LR K+++ +LI T+RG+GY Sbjct: 186 TGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVLREE 225 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 109/227 (48%), Gaps = 5/227 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D + V L + GY + +GR+ L K+ LI+LD M+P M G + Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIE 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA- 120 +L+ +R Q P+I LTA+ D++ G + G +DY+VKPFS EL AR++ L++ A Sbjct: 64 VLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLEAK 123 Query: 121 ---LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 L L + V + LT EF+LL G+ R + Sbjct: 124 TINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLELLEYAI 183 Query: 178 GINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAVKK 223 G ++ T+D I LR K++ DP + I T+ G+GY + Sbjct: 184 GEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLKPRGE 230 >UniRef50_Q1AZL3 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=Q1AZL3_RUBXD Length = 227 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 94/225 (41%), Positives = 137/225 (60%), Gaps = 2/225 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED + +GLS GY + DG GL +AL++D +++LDIMLPG+DG Sbjct: 1 MRVLIVEDEPGIVRMLERGLSAQGYSCLSAEDGETGLRMALEEDVDVVLLDIMLPGLDGR 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++L+ LR + PV+ LTARD V+ +V LD+GA+DYL KPF+F ELLAR+RA +R+ Sbjct: 61 EVLRRLRLRRPGLPVLMLTARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALVRRAD 120 Query: 120 ALNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 ST L L++D +S V R + L+ +EF LL L +++ R I S +W Sbjct: 121 QPESTALRAGDLKLDLLSRRVWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILSAVWD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 FD +N VDV +R LR K+D P LI T+RG GY F ++ Sbjct: 181 YAFDPGSNVVDVYVRYLRRKLDRPGEPSLITTVRGAGYRFDPPRE 225 >UniRef50_P76340 Probable transcriptional regulatory protein yedW n=131 Tax=Proteobacteria RepID=YEDW_ECOLI Length = 223 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 223/223 (100%), Positives = 223/223 (100%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW Sbjct: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA Sbjct: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 Query: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN Sbjct: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK Sbjct: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 323 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 89/221 (40%), Positives = 129/221 (58%), Gaps = 2/221 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 IL+IED + +V L+ GY + SDG GL A + L++LD MLPG+ G + Sbjct: 10 HILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISGLE 69 Query: 62 ILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-HH 119 I + LR+ PV+ +TARD V DR GLD+GA+DY+VKPFS ELL+R+R LRQ Sbjct: 70 ICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLRQPRR 129 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 + + L L +D V+ V+R + LT KE+ LL L +++ R I +WG Sbjct: 130 SRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWGC 189 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 +F D+N ++V IR LR K++ P ++LI T+RG+GY Sbjct: 190 DFTGDSNIIEVYIRYLRLKIEGPGEKRLIQTVRGVGYVLRD 230 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 323 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 122/227 (53%), Gaps = 7/227 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D + L AGY + VSDG + LI+LD+MLP MDG Q Sbjct: 4 KILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDGIQ 63 Query: 62 ILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ--- 117 + + LR P++ LTA V D++ GLD+GA+DY+ KPFS EL++R++A R+ Sbjct: 64 VCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQT 123 Query: 118 --HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 A ++T +I L + + V D +I LT KEF+LL L G+++ R + Sbjct: 124 LPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLLHG 183 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAV 221 +W +F DT VDV I LR K++ + + I T+R +GY A Sbjct: 184 VWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKLHAP 230 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 323 bits (830), Expect = 2e-87, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 124/226 (54%), Gaps = 5/226 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+L+++D+Q E V G+ + AV DG L +++ ++ILDIMLPG DG Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + + LR + P+I LTA+ DRV GL+ GA+DY+ KPFS EL+AR++A LR+ A Sbjct: 66 LCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQAA 125 Query: 122 NS----TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + L+ GL + + V D +T +EF LL+ LA + R + +W Sbjct: 126 DPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAVW 185 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 G ++ D TVDV IRRLR K+ P + + T+ G+GY F K Sbjct: 186 GYDYFGDQRTVDVHIRRLRTKL-ASLPHEYLQTVWGVGYKFTPPVK 230 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 323 bits (830), Expect = 2e-87, Method: Composition-based stats. Identities = 84/226 (37%), Positives = 125/226 (55%), Gaps = 7/226 (3%) Query: 4 LLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQIL 63 L++ED+ E V L + +D DG+ GL +A+ Y LIILD+MLP +DGW+I Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 64 QTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ--- 117 + LR + TP+I LTA++ D+V GL GA+DYL KPF E LARV A LR+ Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 118 HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 ++ + TL L + S+ + ++ LT KEF+LL +LA AG + R + ++W Sbjct: 129 YNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQVW 188 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFP-EKLIATIRGMGYSFVAVK 222 G + T T+D I+RLR K+ P + T+ G+GY + Sbjct: 189 GYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEVKE 234 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 74/223 (33%), Positives = 121/223 (54%), Gaps = 6/223 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL+ +D ++ ++ + L + GY S+G + + ++ + L++LD+M+P +DG Sbjct: 7 RILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDGLT 66 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ---- 117 +R P+I LTAR DR+ GL GA+DY+ KPFS ELLAR+ A LR+ Sbjct: 67 ACMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTHSF 126 Query: 118 HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 +T ++ L +D +VS ++ LTRKEF LL+L + ++ R + +IW Sbjct: 127 SKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLLDQIW 186 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 G + + TVD I+ LR K+ + I T+ G+GY F A Sbjct: 187 GTEYHGNLRTVDTHIKTLRLKLGEAGG--YIQTVWGIGYKFEA 227 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 323 bits (829), Expect = 3e-87, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 128/224 (57%), Gaps = 4/224 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 +K+L+IED+ E + + +AGY + SDG +GL L + IILDIMLP ++GW Sbjct: 5 IKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPKLNGW 64 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-- 117 ++ +T+R + P+I LT + D ++GL+ GA+DY+VKPF +EL+ARV+ LR+ Sbjct: 65 EVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLRRTI 124 Query: 118 -HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + L+ + + + V +N + + KE +L + LA +++ R + + Sbjct: 125 LSESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQQLLDRV 184 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 WG F+ D TVDV I+R+R K+ + + I TIRG+GY F Sbjct: 185 WGYEFNGDPRTVDVHIKRIRDKLAEHKAKWSIVTIRGVGYRFEE 228 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 323 bits (829), Expect = 3e-87, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 131/232 (56%), Gaps = 11/232 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++LL++D + + L++ G+V + V+DGR L LA ++ Y I+LDIMLP +DG + Sbjct: 11 RVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIE 70 Query: 62 ILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + + LR +TP++ ++A+ D+V L+ GA+DY+ KPFS ELLARV+A LR+ A Sbjct: 71 VCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 130 Query: 121 L---------NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTV 171 +S LR+ H V +D + LT KE++LL L + R Sbjct: 131 EISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 190 Query: 172 IASEIWGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFVAVK 222 + IWG +F +T VDV I +LR K++D P + I TIRG GY F +K Sbjct: 191 LLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKELK 242 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 323 bits (829), Expect = 3e-87, Method: Composition-based stats. Identities = 87/231 (37%), Positives = 125/231 (54%), Gaps = 12/231 (5%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLA-LKDDYALIILDIMLPGMDGW 60 ++L++ED+ ++ V LS G + V DG L L + L++LD+MLPGMDG Sbjct: 3 RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGI 62 Query: 61 QILQTLRTAKQ----TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR 116 + + LR + PV+ LTARD V GL+ GA+DY+ KPFS +L +RVRAQLR Sbjct: 63 SVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLR 122 Query: 117 QHH------ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRT 170 + LE GL +D + V+ + LT +EF++L LLAS G + R Sbjct: 123 RQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSRE 182 Query: 171 VIASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVA 220 I +WG F + + DV I+ LR K++ DP + I T+RGMGY F Sbjct: 183 QIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFAE 233 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 322 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 81/225 (36%), Positives = 128/225 (56%), Gaps = 7/225 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+++D+ E V + L AG+ +D +DG L +A L++LD+MLPG+DG + Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH--- 118 + + LR + PVI LTAR DR+ GL+ GA+DY+ KPFS EL RV++ LR+ Sbjct: 117 VFRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANET 176 Query: 119 --HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 A L L +D+ + + +R + + LT +EF LL L R G R + + Sbjct: 177 VPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEHV 236 Query: 177 WGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVA 220 WG ++ D +TV V IRRLR K++ DP +++ T+ G+GY + Sbjct: 237 WGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYDP 280 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 322 bits (827), Expect = 5e-87, Method: Composition-based stats. Identities = 86/225 (38%), Positives = 125/225 (55%), Gaps = 6/225 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 ILL+ED+ E ++ AG+ + SDG GL +A + LIILD+MLPG+DG+ + Sbjct: 4 ILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDGFSV 63 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR-----Q 117 + + P++ LTA R+ GL+ GA DY+VKPFS ELLARVRA LR + Sbjct: 64 CRAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNERQR 123 Query: 118 HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 ++ L + +++D S V + I L+ KEF LL L AG + R ++ +W Sbjct: 124 QTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLERVW 183 Query: 178 GINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAV 221 G +F T+DV +R LR K++ DP LI T+RG+GY F Sbjct: 184 GSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCFQDP 228 >UniRef50_C7PP48 Two component transcriptional regulator, winged helix family n=20 Tax=Bacteria RepID=C7PP48_CHIPD Length = 235 Score = 322 bits (827), Expect = 6e-87, Method: Composition-based stats. Identities = 90/235 (38%), Positives = 139/235 (59%), Gaps = 13/235 (5%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+LLIED ++ + L+EAGY + DG+ GL +A ++++ LIILD+MLPGM+G Sbjct: 1 MKLLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMATENNFQLIILDVMLPGMNGI 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 + + LR + TP++ LTA S ++ V GLDSGA+DYLVKPF +ELLAR+R+ LR++ Sbjct: 61 AVCKALRQQQLTTPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRRNN 120 Query: 119 -----------HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEII 167 + + L+++ L +D + S SR +I LT E++LL + ++ Sbjct: 121 DTAAAATPAVTQSNGNVLKVADLELDLNTKSASRYGQTIVLTATEYRLLEYMMRNPKRVL 180 Query: 168 PRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 R I +WG++F+ +T VDV + LR KV+ LI T+ GMGY + Sbjct: 181 SRMEILENVWGVDFNMNTKVVDVYVNYLRKKVNRKDQPALIQTVVGMGYMLKEEE 235 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 322 bits (827), Expect = 6e-87, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 120/226 (53%), Gaps = 9/226 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+L+ +D+ +E + + + A +DGR+ L + K+ ++ILD+M+P +DG+ Sbjct: 33 MKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGF 92 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + + +R TP+I LTA+D DRV GL+ GA+DY+ KPFS E++AR+RA +R+ Sbjct: 93 EACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQP 152 Query: 121 LNST--------LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 L +D V ++ KEF LL L G + R + Sbjct: 153 KPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSREQL 212 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 ++WG ++ D T+DV I+++R ++D P I T+ G+GY F Sbjct: 213 LEQVWGFDYFGDVRTIDVHIKKIRQRLDKL-PYDCIQTVWGIGYKF 257 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 322 bits (827), Expect = 6e-87, Method: Composition-based stats. Identities = 80/222 (36%), Positives = 132/222 (59%), Gaps = 3/222 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+I+D++ + +GL+ GY + + G++GL L L+D+ LIILDIM+P +DG + Sbjct: 4 KILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGLE 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ---H 118 + + LR P++ +T DS+ DRV GL++GA+DYLVKPF+F EL+ARV+A LR+ Sbjct: 64 VCKRLRKDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDHK 123 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + L S L +D + R + +I + EF LL +++ R ++ +WG Sbjct: 124 KKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMDRVWG 183 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 +F ++N ++V + LR+K++ +LI T+RG GY Sbjct: 184 FDFRGESNVLEVYVGYLRSKLEAQNEPRLIHTVRGAGYVLRE 225 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 127/230 (55%), Gaps = 12/230 (5%) Query: 1 MK---ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGM 57 MK IL+ +D + + L + GY + +DG + +++ L++LDIM+P M Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 58 DGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 DG+++ + +R P+I L+A+ S D+V GL GA+DY+ KPF+ EL+ARV AQLR+ Sbjct: 61 DGYEVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRR 120 Query: 118 --------HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPR 169 S LE+ G+ +D +V I LT KEF +L+LLAS ++ Sbjct: 121 FLTLNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNV 180 Query: 170 TVIASEIWGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSF 218 I ++W ++ NTV V IR LR K+ +D KLI T+ G+GY+F Sbjct: 181 ENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230 >UniRef50_B9XE94 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobiales RepID=B9XE94_9BACT Length = 224 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 91/223 (40%), Positives = 137/223 (61%), Gaps = 2/223 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL++ED ++T ++ + L + +D DG + L LA + I+LDIMLPG DG Sbjct: 1 MRILVVEDEKKTASFIRKALQAESFAVDVSHDGTEALLLASNTPFDAIVLDIMLPGRDGL 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +L+ LR K TPV+ L+AR V++RV GL++GA+DYL KPF+ +EL+ARVR+ R+ + Sbjct: 61 SVLRQLRQQKNQTPVLLLSARGEVNERVEGLNAGADDYLPKPFALAELIARVRSIGRRSN 120 Query: 120 ALNSTL-EISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 S L +++ L +D+++ R S LT +E++LL L G I R I ++W Sbjct: 121 EPKSVLLQVADLTLDTITRQAQRGGTSFELTTREYRLLEFLMRTPGRICGRMAILEKVWD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 +FD TN VDV I+RLR KVD+ F KL+ T+R +GY Sbjct: 181 YDFDPGTNLVDVYIKRLREKVDEGFEPKLLHTVRNVGYVMKEQ 223 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 85/227 (37%), Positives = 125/227 (55%), Gaps = 10/227 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+L+IED+ V LS+ G D DG G+ AL ++Y +IILD+MLP +DG + Sbjct: 5 KVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGLE 64 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + Q LR P++ LT+R DD+V L++GA+DY+ KPFS EL ARV A +R++ Sbjct: 65 VCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRYRP 124 Query: 121 LNS--------TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 T GL +D+ +H V+ + I +T KEF LL L G RT + Sbjct: 125 EKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRTYSRTEL 184 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSF 218 +WG ++ +TV+ I RLR K+++ P K I T+ G+GY F Sbjct: 185 LDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKF 231 >UniRef50_B2J1E6 Multi-component transcriptional regulator, winged helix family n=2 Tax=Nostoc punctiforme PCC 73102 RepID=B2J1E6_NOSP7 Length = 787 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 81/224 (36%), Positives = 121/224 (54%), Gaps = 2/224 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILLIED++ + Q L++ Y ++ DG+ G A +Y LI+ D++LP +DG Sbjct: 1 MRILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNYDLILTDVVLPKLDGI 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + Q LR+ TP++ +TA+D DR+RGLD+GA+DYL+KP + EL ARVRA LR+ Sbjct: 61 TLCQRLRSNGCSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRRGD 120 Query: 120 AL-NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 LE+ LR+D V+ DN + LT KE+ LL +L + R I +W Sbjct: 121 TPRPPVLEVGALRLDPSICEVTYDNQVLDLTPKEYSLLEILLRNPLRVFSRGDIIEHLWT 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 + TV I+ LR K+ I + G+GY + K Sbjct: 181 FDDPPQEETVKSHIKGLRHKLKVVGAVDWIENVYGLGYRLKSQK 224 Score = 106 bits (266), Expect = 6e-22, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 3/133 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +L+++D+ + L G I + D + L+ILD+ +P + G + Sbjct: 501 NVLVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQSTAPDLLILDVEMPHISGIE 560 Query: 62 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 + Q +R ++ P++ LTA ++ + +G +DY+VKP +ELLAR+ +L + Sbjct: 561 LCQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARITHRLERS 620 Query: 119 HALNSTLEISGLR 131 L S L Sbjct: 621 RLLQSLSTKDPLT 633 >UniRef50_Q44006 Transcriptional activator protein czcR n=330 Tax=cellular organisms RepID=CZCR_RALME Length = 225 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 121/223 (54%), Positives = 166/223 (74%), Gaps = 1/223 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED RT E++ +GLSE+G+V+D ++G DGL++A + DY +IILD+MLPGMDGW Sbjct: 1 MRVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGW 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH-H 119 +++++R+ +TPV+ LTA D V DRVRG + GA+DYLVKPF+F+ELLAR+R LRQ Sbjct: 61 TVIKSIRSKSETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQSTS 120 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 + L I+ L +D + V R I LT +EF LL LL R GE++ RT IAS++WG+ Sbjct: 121 KESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSLLHLLMRRRGEVLSRTTIASQVWGV 180 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 NFD+DTN VDVAIRRLR+KVDDPF +KLI T+RGMGY + Sbjct: 181 NFDTDTNVVDVAIRRLRSKVDDPFDQKLIHTVRGMGYVLDPER 223 >UniRef50_C7NAQ8 Two component transcriptional regulator, winged helix family n=10 Tax=Bacteria RepID=C7NAQ8_LEPBD Length = 227 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 89/220 (40%), Positives = 142/220 (64%), Gaps = 2/220 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED ++ +T+ L + Y +D+ DG + + +Y IILDIMLP +DG+ Sbjct: 1 MRLLVVEDEKKLNGLITKKLEKEYYGVDSCFDGEEAIRYVEGTEYDAIILDIMLPKLDGF 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-H 118 ++++ +R K P++ LTARD++DD+V+GLD GA+DYLVKPF F EL+AR+R LR+ Sbjct: 61 EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 ++ + ++ L++D + +V RD + I L+ +E+ +L L G+I+PR I IW Sbjct: 121 GNADNVITVANLKVDLDAKTVFRDGVLIKLSGREYSILEYLIRNKGKILPRERIEDHIWN 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 ++ TN +DV IR LR K+DD + KLI TIRG+GY Sbjct: 181 YEYEGGTNVIDVYIRYLRKKIDDSYTPKLIHTIRGLGYVL 220 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 83/229 (36%), Positives = 127/229 (55%), Gaps = 8/229 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 +KIL++ED++ + L + GY + DG + D++ L+ILDIMLP + G+ Sbjct: 5 IKILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVGGY 64 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH-- 118 ++LQ +R TPV+ L+A+ D++ GL GA+DYL KPF EL ARV+AQLR++ Sbjct: 65 EVLQKIREKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRYLN 124 Query: 119 -----HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 + + M+ ++ V + S+TLT KEF++L L ++ + + Sbjct: 125 FSWETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFTKNQLF 184 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAV 221 IWG N+ +D NTV V IRRLR K++ DP I TI G+GY V Sbjct: 185 KSIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKLVEE 233 >UniRef50_UPI0001C16F99 Multi-component Transcriptional regulator, Winged helix family n=2 Tax=Nostocaceae RepID=UPI0001C16F99 Length = 1329 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 119/225 (52%), Gaps = 3/225 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL++ED+ ++ L+ Y ++ +DG+ L +Y LI+LDI+LP +DG Sbjct: 1 MKILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVETYEYDLILLDIVLPKLDGI 60 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + + +R+ ++ P++ LT RDS D+ GLD+GA+DY+VKP EL+ARVRA LR+ Sbjct: 61 SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGG 120 Query: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 LE GLR+D S V+ ++LT KE+ LL LL + +I +W Sbjct: 121 VTSQPVLEWGGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLWS 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSFVAVK 222 + V I+ LR K+ L+ T+ G+GY + Sbjct: 181 YEDTPGEDAVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRLKPQE 225 Score = 99.4 bits (248), Expect = 7e-20, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 7/116 (6%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 +KIL+++D+ +T E + L+ G I ++ K ++ILDI +PGM G Sbjct: 382 IKILVVDDDLKTLELLQVLLTPWGLEIVTLNYPEQFWSTWEKIHPDMLILDIEMPGMSGI 441 Query: 61 QILQTLR---TAKQTPVICLTARD--SVDDRVRGLDSGANDYLVKPFSFSELLARV 111 ++ + +R ++ P++ LT + ++V GA+D++ KP SEL+ R+ Sbjct: 442 ELCKMIRSHDQGREVPILFLTVHSNAEIVNQV--FSVGADDFVSKPIIISELVNRI 495 Score = 74.4 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L+ +D+ T++ + L + GY + V G + A+ +I+LD+++PGM+GW+ Sbjct: 1076 VLVCDDDPITRQELKNLLLQGGYRVLTVDSGDQAIAQAVIQHPDVILLDLVMPGMNGWET 1135 Query: 63 LQTLRT---AKQTPVIC 76 + L+ K P++ Sbjct: 1136 MAGLKKCSDTKDIPIVI 1152 Score = 45.5 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+IED+ + + GR+ ++L+ K + L+ILD++LP DG+ Sbjct: 1205 KILIIEDDHDLADLLATLFDRHDIETFIAKTGREAIHLSQKVNPDLLILDLILPEADGFT 1264 Query: 62 ILQTLRTAKQ---TPVICLTARD-SVDDR 86 ++ L+ Q PV+ +A+D +R Sbjct: 1265 VVDWLKQHDQLFSIPVVVYSAKDLDDSER 1293 >UniRef50_C0ZDC3 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZDC3_BREBN Length = 231 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 87/219 (39%), Positives = 123/219 (56%), Gaps = 1/219 (0%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +LL+ED ++ L G+ D DG GL AL +Y LI+LD+MLP + G ++ Sbjct: 13 LLLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIEYDLILLDVMLPELSGIEL 72 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR-QHHAL 121 + +R K P+I +TAR V D V GLDSGANDYL KPF+ EL AR+R LR + Sbjct: 73 CRRIRETKDVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLRQRESKA 132 Query: 122 NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINF 181 N + + LR+ + V D I LT +EF LL+ + + + R I + +WG +F Sbjct: 133 NQEIVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWGFDF 192 Query: 182 DSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 +TN VDV IR LR K++ KLI T+RG+GY+ Sbjct: 193 MGNTNIVDVYIRYLRNKIESDPSVKLIHTVRGIGYTLRD 231 >UniRef50_C7LY45 Two component transcriptional regulator, winged helix family n=2 Tax=Actinobacteria (class) RepID=C7LY45_ACIFD Length = 236 Score = 319 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 91/222 (40%), Positives = 136/222 (61%), Gaps = 2/222 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L+++D + + +GLS G+ +D SDG GL +A Y I+LDIMLPG++G+ Sbjct: 1 MRLLIVDDEENLLASLKRGLSAEGFAVDTASDGTTGLDMARHAPYDCIVLDIMLPGVNGF 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 + Q LR + TP++ LTA+D D LD+GA+D L KPFSF+ L+AR+RA LR++ Sbjct: 61 KFTQLLREERNWTPILMLTAKDGEYDEAEALDTGADDVLKKPFSFTVLVARIRALLRRNV 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + L+ L +D SH V+R N++I LT +EF L LL G ++ + I + +W Sbjct: 121 ESHPPILQAGDLTLDPASHRVTRGNVTIDLTTREFSFLELLLRNKGHVLRKQDIIAHVWD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 +F+ D+N V+V I LR K+D PF K I TIRG+GY Sbjct: 181 YDFEGDSNIVEVYIGYLRKKIDVPFGTKAITTIRGVGYRLEE 222 >UniRef50_B1ZVS5 Two component transcriptional regulator, winged helix family n=3 Tax=Chlamydiae/Verrucomicrobia group RepID=B1ZVS5_OPITP Length = 228 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 87/225 (38%), Positives = 133/225 (59%), Gaps = 5/225 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED+ + +V +GL + GY +D DG GL LA Y ++DIMLP +DG Sbjct: 6 MRVLVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALATSTAYDAAVVDIMLPELDGL 65 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +++ LR PV+ L+AR SV+DRV+GL +G +DYL KPF+F+EL AR++A +R+ Sbjct: 66 SLVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRAS 125 Query: 120 ALNS--TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 L + +D VS +V+ + L +EF LL L AG + + +I +W Sbjct: 126 RSPEATRLSAGDVTLDLVSRTVTVGGQPVELQPREFSLLEYLLRHAGRPVTKVMILEHVW 185 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 +FD TN VDV + RLR+K+D + I T+RG+GY F A + Sbjct: 186 DYSFDPQTNVVDVLMSRLRSKIDP--DKTRIETLRGVGYVFKAGR 228 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 318 bits (818), Expect = 6e-86, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 120/233 (51%), Gaps = 16/233 (6%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLA----------LKDDYALIILD 51 IL+IED +E V L E GY SDG + L L + + LIILD Sbjct: 23 NILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILD 82 Query: 52 IMLPGMDGWQILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLAR 110 +MLPG++G + + +R P++ ++A+ S DRV GL+ GA+DYL KPF E+LAR Sbjct: 83 VMLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLAR 142 Query: 111 VRAQLRQHH----ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEI 166 RA LR+ L L L + + + L+ KE++LL L + Sbjct: 143 CRALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRRV 202 Query: 167 IPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 PR + ++WG +F D+ TVDV IR LR K++ DP + I T+RG GY F Sbjct: 203 WPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >UniRef50_Q99U73 Response regulator arlR n=10 Tax=Firmicutes RepID=ARLR_STAAN Length = 214 Score = 318 bits (818), Expect = 7e-86, Method: Composition-based stats. Identities = 87/216 (40%), Positives = 130/216 (60%), Gaps = 6/216 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL++ED Q ++ L+ Y +D DG+DGL AL Y LIILD+MLP ++G +I Sbjct: 4 ILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSINGLEI 63 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 + +R + TP+I +TA+ D+V GLD GA+DY+VKPF ELLAR+RA LR+ Sbjct: 64 CRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR-QPQK 122 Query: 123 STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFD 182 ++++G + V+ + I LT+ E+ LL+LLA ++ R I + +WG N + Sbjct: 123 DIIDVNGTLL-----KVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWGYNSE 177 Query: 183 SDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +TN VDV IR LR K+ +K+I T+RG+GY Sbjct: 178 VETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVI 213 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 318 bits (818), Expect = 7e-86, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 123/227 (54%), Gaps = 10/227 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+LL++D + V Q L Y + +G L K+ L+ILD+MLP +DG++ Sbjct: 6 KVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLIDGYE 65 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH--- 118 + +T+R + P++ L+A+ + D+ G + GA+DYLVKPFS EL RV+A LR+ Sbjct: 66 VCRTIRETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSFDK 125 Query: 119 ------HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 + + L ++ SH V + LT KEF+LL +A ++ R + Sbjct: 126 EQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTREQL 185 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 + +W + +DT+T+ V IR+LR K++ DP + I T+ G+GY F Sbjct: 186 FAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232 >UniRef50_B4WME0 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WME0_9SYNE Length = 236 Score = 318 bits (817), Expect = 7e-86, Method: Composition-based stats. Identities = 87/236 (36%), Positives = 135/236 (57%), Gaps = 14/236 (5%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M +L ED + +V GL E G+V++ G A++++Y +I+LDIM+PG DG Sbjct: 1 MHVLFAEDEPKIASFVQIGLKEQGFVVEYCDHGDIAYEKAIQNEYDVILLDIMMPGKDGL 60 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 IL+ LR + TPVI LTARD +DDR++GL+ GA+DY+ KPF EL+AR+ A +R+ Sbjct: 61 FILKNLRQVGRNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRRSA 120 Query: 120 ALNSTL-EISGLRMDSVSHSVSRDNIS------------ITLTRKEFQLLWLLASRAGEI 166 L + ++D ++ +V+ + + + LT +EF LL L G + Sbjct: 121 GEQPNLVTVGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPGRV 180 Query: 167 IPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 RT + +WG +F+ TN VDV I+RLR K+D E+ I ++RG+GY F + Sbjct: 181 FTRTQMLEHVWGYDFNPSTNVVDVCIQRLRKKIDMKGNERWIESVRGVGYRFRQAE 236 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 318 bits (817), Expect = 8e-86, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 127/225 (56%), Gaps = 7/225 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L++ED + + + L + G+ V DG L + +++LD+MLPGM G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ----- 117 + LR PVI +TARDS D+V GL+ GA+DY+ KP+S EL+AR+RA LR+ Sbjct: 64 CKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADND 123 Query: 118 -HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 A + LE +RMD H VS + ITL KEF LL L +G ++ R + + Sbjct: 124 DAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 183 Query: 177 WGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFVA 220 WG ++ DT T+DV ++RLR+K+ +DP + T+RG+GY Sbjct: 184 WGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLEG 228 >UniRef50_C5NUZ8 Response regulator ArlR n=4 Tax=Bacteria RepID=C5NUZ8_9BACL Length = 223 Score = 318 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 87/224 (38%), Positives = 138/224 (61%), Gaps = 3/224 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL++ED + +T+ L Y +D+ DG + L DY LII DIM+P +DG+ Sbjct: 1 MKILVVEDERDLNRIITKHLKRNNYSVDSCFDGEEALDFVGYSDYDLIITDIMMPNVDGY 60 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + ++ LR TPVI LTA+D+++D++ GLDSGA+DY+VKPF F EL AR+R +R+++ Sbjct: 61 EFIKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRRNY 120 Query: 120 A-LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + ++I + +D V+R+ +I LT KE+++L L I+ R I + +W Sbjct: 121 GLATNVIQIDDIVLDISKKQVTRNGENIGLTGKEYEVLEYLMKNKESILSRDQILNHVWD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 ++D +N VDV I+ +R K+D+ + +I T RG+GY FV K Sbjct: 181 YDYDGASNIVDVIIKNIRKKLDNGTDKTIIYTKRGLGY-FVKEK 223 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 125/223 (56%), Gaps = 3/223 (1%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 ILL+ED ++ ++ +++ L + G+ + +DG + L + LI+LD+MLPG+ GW++ Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 ++ +R TP+I LTAR D++ GL+ GA+DY+ KPFS EL R++A LR+ Sbjct: 65 MKKIRQKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSRPHE 124 Query: 123 ST--LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 + IS L ++ + + LT EF++L LLA G++ R I ++G Sbjct: 125 QVTNVSISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHILERVFGDI 184 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKL-IATIRGMGYSFVAVK 222 ++ T+D I LR K++ ++ I T+ G+GY VA + Sbjct: 185 YEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKLVAEE 227 >UniRef50_C6QDD0 Two component transcriptional regulator, winged helix family n=5 Tax=Proteobacteria RepID=C6QDD0_9RHIZ Length = 262 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 89/225 (39%), Positives = 139/225 (61%), Gaps = 3/225 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L+IED++ T +++ + L E G+ D DG GL LA Y ++I+D MLP +DG Sbjct: 37 MRVLVIEDDRETAQFLQKSLKENGHTADLAGDGEAGLALATDGAYDVLIVDRMLPLLDGL 96 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 ++++LR TPV+ L+A VDDRV+GL +G +DYL KP+++SELLARV A R+ Sbjct: 97 SVIKSLRAEGNRTPVLILSALGEVDDRVKGLRAGGDDYLTKPYAYSELLARVEALGRRTA 156 Query: 119 -HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + + + L +D +SH V+R I L +E++LL L AG+++ RT++ +W Sbjct: 157 PEEQQTRISVGDLVLDRLSHRVTRSGEHILLQPREYRLLEYLMQHAGQVVTRTMLLEHVW 216 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 +FD TN +DV + RLRAK+D F + L+ T+RG GY+ Sbjct: 217 DYHFDPQTNVIDVHVSRLRAKIDKNFDKPLLHTVRGAGYTIRDGP 261 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 80/225 (35%), Positives = 130/225 (57%), Gaps = 5/225 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+L++ED + ++T L AGY + G D L L + L++LD+MLPG+DG + Sbjct: 7 KVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLE 66 Query: 62 ILQTLRTAKQTP-VICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ--- 117 + Q +R P +I LTA+ D++ GL+ GA+DY+VKPF+ EL+AR++A LR+ Sbjct: 67 VCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRDR 126 Query: 118 HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + A + L +D+ ++ + ++N + LT E+ LL + G+ + R + + IW Sbjct: 127 YEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLNGIW 186 Query: 178 GINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFVAV 221 G ++ DT T+DV IRRLR K++D P + I TI G GY + Sbjct: 187 GEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQPE 231 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 82/218 (37%), Positives = 131/218 (60%), Gaps = 2/218 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+++D+ E + L GY VSDG + + +++LD+MLPG +G Q Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH-A 120 I Q +RT P++ LTA+ D V+GL++GA+DY+ KPF EL+ARVRAQLR+ Sbjct: 77 ICQDIRTQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRRGETG 136 Query: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 L I +++D +H V+RD + I LT EF LL LA + ++ R ++ ++WG Sbjct: 137 QAENLSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLLEQVWGYR 196 Query: 181 FDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYS 217 +DT V+V ++RLRAK++ DP +++ T+RG+GY Sbjct: 197 HAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 87/232 (37%), Positives = 135/232 (58%), Gaps = 10/232 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +ILL+ED+ + + L++AG+ +D V DG DGL AL + Y LI+LDIMLPG DG+ Sbjct: 8 RILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGFD 67 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 I + LR K TP++ +TA+ D+V GL+ GA+DY+ KPFS E+LARV+A R+ Sbjct: 68 ICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVEV 127 Query: 121 LNST--------LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 T +E+ + ++ V+ + ++ LT KEF+LL L A G R + Sbjct: 128 DQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDEL 187 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAVKK 223 E+WG + ++TV+ I RLR K++ DP + + T+ G+GY F ++ Sbjct: 188 LDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFAEREE 239 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 74/224 (33%), Positives = 125/224 (55%), Gaps = 6/224 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D ++ ++ + L + + I+ SDG++ L + + LIILD+MLP + G + Sbjct: 4 KILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISGEE 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + Q +R KQTP++ LTA+ + +D+V G GA+DYLVKPFS ELLAR++A LR+ + Sbjct: 64 VCQKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSNQK 123 Query: 122 NS-----TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + L++ V + LTR EF +L L G++ R +A ++ Sbjct: 124 AEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQLAKKV 183 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 G+ + T+D I+ +R K+ + +LI T+ G+GY F Sbjct: 184 MGLEYKGYDRTIDAHIKNIRKKL-NLEKNQLIITVYGVGYKFEG 226 >UniRef50_D2QKB6 Two component transcriptional regulator, winged helix family n=11 Tax=Bacteroidetes RepID=D2QKB6_9SPHI Length = 230 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 94/224 (41%), Positives = 137/224 (61%), Gaps = 4/224 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL++ED + +V +GL E +D DG+ G +AL + Y +I+LDI LP M+G+ Sbjct: 6 MKILVVEDEPKLASFVKKGLEEQSCEVDVAYDGQVGRNMALNNLYDVIVLDINLPKMNGF 65 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 ++Q++R K TPV+ LTA SVDD++ G ++GA+DYLVKPF F EL+AR+RA ++ Sbjct: 66 DVVQSIRQEKNRTPVLMLTAMGSVDDKLTGFEAGADDYLVKPFEFRELMARLRALTKRSS 125 Query: 119 --HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + L+++ L +D R + I LT KEF LL L G ++ R IA ++ Sbjct: 126 DAGMQTNVLKVADLELDLNEKVARRGDKRIELTAKEFGLLDYLMRNRGRVVSRVDIAEKV 185 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 W I+FD+ TN +DV + LR K+D FP KLI T+ GMGY Sbjct: 186 WDIHFDTGTNVIDVYVNFLRKKIDKDFPTKLIHTVIGMGYMLKE 229 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 122/224 (54%), Gaps = 4/224 (1%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+++D ++ + L + G+ + DGR LY+A + L++LD+M+P M G++ Sbjct: 4 ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGGYEF 63 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA-- 120 L+ +TPVI LTA+ D++ GL+ GA+DY+ KPF+ EL+AR+RA LR+ Sbjct: 64 LRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQTP 123 Query: 121 -LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 L + + +D +V + LT EF +L L + G++ R + + G Sbjct: 124 LEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLLDRVSGD 183 Query: 180 NFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAVK 222 F+ T+DV IR LRAK++ DP + I T+ GMGY F + Sbjct: 184 AFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRFALPR 227 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 119/233 (51%), Gaps = 12/233 (5%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 IL++ED+Q + + + L + +DG GL + + LI+LD+MLP +DG + Sbjct: 13 NILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLE 72 Query: 62 ILQTLRTA---KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 + +R K ++ LTA+ DR+ GL +GA+DYLVKPFS EL+ARVRA LR+ Sbjct: 73 VCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQ 132 Query: 119 ----HALNSTLEISGLRMDSVSHSVSR----DNISITLTRKEFQLLWLLASRAGEIIPRT 170 + + ++D H SR + LT EF LL S G + RT Sbjct: 133 LRQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRT 192 Query: 171 VIASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAVK 222 + ++WG +F D VD IRRLR K++ DP I T+ G+GY F Sbjct: 193 QLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFEDPD 245 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 91/228 (39%), Positives = 128/228 (56%), Gaps = 11/228 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+L+++D ++ + LS GY + SDG + L L ++ ++ILDIM+P +DG+ Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + Q +R P+I LTA V DR+ GL+ GA+DY+VKPFS EL AR+RA LR+ + Sbjct: 76 VCQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTNKA 135 Query: 122 --------NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 + + + L +D + +DN I LT EF LL LL SR+G+ R I Sbjct: 136 AFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRADIL 195 Query: 174 SEIWGI--NFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 E+WG DT VDV I RLRAK++ DP LI T RG GY F Sbjct: 196 QEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLF 243 >UniRef50_Q3MGM2 Sensor protein n=22 Tax=Bacteria RepID=Q3MGM2_ANAVT Length = 1629 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 77/226 (34%), Positives = 121/226 (53%), Gaps = 3/226 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL++ED++ +T L+ Y ++ SDG L DY LI+LD++LP +DG Sbjct: 1 MKILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVILPRLDGI 60 Query: 61 QILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + + +R+ +Q P++ LT DS ++ GLD+GA+DY+VKPF EL+ARVRA LR+ Sbjct: 61 SLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRRGG 120 Query: 120 A-LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 LE L++D S V + ++LT KE+ LL L + + ++I IW Sbjct: 121 TTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIWS 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSFVAVKK 223 V I+ LR K+ + L+ T+ G+GY A ++ Sbjct: 181 YEDTPGEEAVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRLKAQEE 226 Score = 96.7 bits (241), Expect = 4e-19, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 7/115 (6%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+L ++D+ + + L G + + D R + L+ILD+ +P +G + Sbjct: 382 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 441 Query: 62 ILQTLR---TAKQTPVICLTAR--DSVDDRVRGLDSGANDYLVKPFSFSELLARV 111 + Q +R + P++ LT + ++V GA+D++ KP EL+ R+ Sbjct: 442 LCQVVRNDPQWSELPILFLTVHKDGEIVNQV--FSVGADDFVSKPIVGPELVTRI 494 Score = 85.2 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ- 61 +L+ +D+ + + L + GY + V+ G++ + A +I+LD+++PGM+GW+ Sbjct: 1381 VLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWET 1440 Query: 62 --ILQTLRTAKQTPVIC 76 +L+ K P++ Sbjct: 1441 MAMLKESTETKHIPIVI 1457 Score = 48.6 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 13/122 (10%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL++ED+ E + GR+ ++L+ + + L+ILD++LP DG+ Sbjct: 1502 RILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQEVNPDLLILDLILPETDGFA 1561 Query: 62 ILQTLRTAK---QTPVICLTARD-SVDDRVRGLDSGANDYL------VKPFSFS--ELLA 109 ++ L+ + PV+ +A+D +R R L G ++L K F ELL Sbjct: 1562 VVDWLQKHQRLCNIPVVVYSAKDLDESERKR-LKLGHTEFLTKGRVTTKEFEQRVIELLQ 1620 Query: 110 RV 111 R+ Sbjct: 1621 RI 1622 >UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanylate cyclase (GGDEF) n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZNT0_ACAM1 Length = 792 Score = 317 bits (813), Expect = 2e-85, Method: Composition-based stats. Identities = 76/226 (33%), Positives = 117/226 (51%), Gaps = 3/226 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL++ED++ E + L + Y ++ +DG+ L +Y LI+ D+MLP +DG Sbjct: 1 MRILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEAFEYDLILSDVMLPRLDGV 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + Q LR Q P++ LT +DS DR GLD+GA+DY+VKPF EL ARVRA LR+ Sbjct: 61 GLCQQLRSQGYQIPILLLTGKDSSHDRAIGLDAGADDYVVKPFDPEELAARVRALLRRGE 120 Query: 120 A-LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 A L+ L++D + V ++ + LT KE+ L+ L+ + +I IW Sbjct: 121 AIKPPILKWENLQLDPRACEVKYQDVLLKLTPKEYALVELMMRNTRRVFSCGMILEHIWT 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSFVAVKK 223 V I+ LR K+ LI T+ G+GY + + Sbjct: 181 YEDTPGEEAVRTHIKGLRQKLKASGAPTDLIETVYGIGYRLKPLAE 226 Score = 96.7 bits (241), Expect = 5e-19, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 10/146 (6%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +I++++D+ + E V G + + + L++LD+ +P + G Sbjct: 489 RIMIVDDDPQILETVAALCKPWGLEVIGLDEPTQFWETLTNSPPDLLLLDVEMPEIGGID 548 Query: 62 ILQTLR---TAKQTPVICLTARDSVDDRV-RGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 + + +R +Q P+I LTA + D V + SGA+D++ KP EL+ R+ +L + Sbjct: 549 LCRVVRNDIQWEQLPIIFLTA-HTEADVVNQVYASGADDFISKPIVGPELVVRILNRLER 607 Query: 118 HHALNSTLEISGLRMDSVSHSVSRDN 143 L L +D ++ +SR Sbjct: 608 TR-LQRRLS----TIDPLARVLSRHE 628 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 82/233 (35%), Positives = 125/233 (53%), Gaps = 13/233 (5%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLAL---KDDYALIILDIMLPGMDG 59 I+++ED + V + L E G+ ++ + DG L + + LI+LD+MLP +DG Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPNVDG 63 Query: 60 WQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR--- 116 +I + +R +K TP++ LTAR + DRV GL+ GA+DYL KPFS EL ARV A LR Sbjct: 64 LEICRRVRQSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRRVE 123 Query: 117 ------QHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRT 170 + + ++ L +D +S V+ + LT KEF LL LLA+ G + R Sbjct: 124 MMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFSRD 183 Query: 171 VIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSFVAVK 222 + +WG ++ TVD I RLR K+ P + I T+ G+GY + + Sbjct: 184 YLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKYERPR 236 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 129/231 (55%), Gaps = 9/231 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL++ED+ + + L + GY I+ G + + ++Y ++I+DIM+P MDG + Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ---- 117 ++ +R + P+I L+A+ D++ GL GA+DY+VKPFS EL+ARV+ +R+ Sbjct: 65 SMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIYY 124 Query: 118 ----HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 N E ++ D +++V++ +TLT KE ++L L + + I Sbjct: 125 NETKSIKENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQIY 184 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAVKK 223 +WG F SD NTV V +RRLR+K++ DP KLI T+ G+GY ++ Sbjct: 185 DSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKLTGDRQ 235 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 83/224 (37%), Positives = 128/224 (57%), Gaps = 6/224 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L++ED + + + L + G+ V+DG L + +++LD+MLPGM G + Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ----- 117 + LR PVI +TARDS D+V GL+ GA+DY+ KP+S EL+AR+RA LR+ Sbjct: 64 CKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDD 123 Query: 118 HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + LE +RMD H VS + +ITL KEF LL L +G ++ R + +W Sbjct: 124 SEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVW 183 Query: 178 GINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVA 220 G ++ DT T+DV ++RLR+K++ DP + T+RG+GY Sbjct: 184 GADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLEG 227 >UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacteria RepID=A0RG02_BACAH Length = 236 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 94/223 (42%), Positives = 137/223 (61%), Gaps = 2/223 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED Q Q + + L+ Y +DA +G D L Y LI+LDIM+PG++G Sbjct: 13 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGL 72 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-H 118 Q+LQ LR T PV+ LTA+D++DDRV+GLD GA+DYLVKPF+F ELLAR+R +R+ Sbjct: 73 QVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRKT 132 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 ++ EI+ L +D H V+R + ITL+ KEF +L + ++ R I +W Sbjct: 133 GNTSNVFEIADLVVDCNMHKVTRGDQVITLSSKEFAILEYMIRNKEVVLTRDKIEQHVWN 192 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 +++ +N +DV +R LR KVD F KLI T+RG GY Sbjct: 193 YDYEGGSNIIDVYVRYLRKKVDSQFETKLIHTVRGTGYVLRVE 235 >UniRef50_C4XS15 OmpR family two-component response regulator n=2 Tax=Desulfovibrio RepID=C4XS15_DESMR Length = 223 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 92/223 (41%), Positives = 148/223 (66%), Gaps = 3/223 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED+++ ++ GL ++G+ +D ++G DGL+LA + Y + I+D+MLPG+DG Sbjct: 1 MRILLVEDDEKIASFILGGLRQSGFAVDHAANGPDGLHLAATEPYCVAIIDVMLPGLDGL 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 Q+++ LR K TP+I L+A+ SV+DRVRGL++G +DYL KPFSF+ELLARV+A +R+ Sbjct: 61 QVIEELRRRKIMTPIIILSAKRSVEDRVRGLETGGDDYLSKPFSFAELLARVQALIRRST 120 Query: 120 ALNS--TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + + L + L M+ ++ VSR ++ L +EF LL G+++ +T+I +W Sbjct: 121 SASEPTRLTVGELSMNLLTREVSRGETAVQLQPREFALLEYFMRNPGKVLSKTMIMEHVW 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 +FD TN VDV + RLR K+D + K++ T+RG+GY Sbjct: 181 DYHFDPQTNLVDVLVCRLRNKIDRDYDRKMLHTLRGVGYVLKE 223 >UniRef50_B8HL49 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HL49_CYAP4 Length = 652 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 117/224 (52%), Gaps = 2/224 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKILLIED+ + + L Y++DAV+DGR G A Y LI++D+ LP DG Sbjct: 1 MKILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGLPQQDGI 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-H 118 + + LR Q P++ +TA+D+ DR+ GLD+GA+DYL KP +EL ARVRA LR+ Sbjct: 61 TLCRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRRGS 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L++ L++D S V+ S+ LT KE+ LL L G++ R + +W Sbjct: 121 ETKTPILQVGNLQLDPRSCQVTYAERSLNLTPKEYNLLELFLRHPGQVFSRGQLVEHLWT 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 + +V ++ LR K+ I I G+GY Sbjct: 181 FDDPPLEESVKAHVKGLRQKLKAAGAVDWIENIYGIGYRLNPPD 224 Score = 95.9 bits (239), Expect = 9e-19, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 7/135 (5%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +LL++D+ E + L G + +++ + + L+ILD+ +P G + Sbjct: 381 NVLLVDDDPIFLEQIVLLLQPWGIHLTGINNPLELWSVLPSTRPDLLILDVEMPQTSGIE 440 Query: 62 ILQTLR---TAKQTPVICLTA-RD-SVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR 116 + Q+LR + P+I LTA RD +V GA+D++ KP ELL R+ +L Sbjct: 441 LCQSLRSDPEWQSLPIIFLTAHRDRETIQQV--FTVGADDFVTKPVVVPELLTRIINRLE 498 Query: 117 QHHALNSTLEISGLR 131 + + S L Sbjct: 499 RTRLIQSLASKDPLT 513 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 81/223 (36%), Positives = 114/223 (51%), Gaps = 6/223 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L+++D R +E + L+ + DG L L++LD+M+P +DGWQ Sbjct: 9 VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 LQ +R PVI LTAR V DRV+GL GA+DY+ KPF EL ARV+A LR+ Sbjct: 68 LQRIREESAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSAGQV 127 Query: 123 S---TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 + L + + + LT KEF LL LLA+ G++ R + IWG Sbjct: 128 EANVPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLDRIWGP 187 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 +F D TVD I+ LR K+ + LI T+ G+GY F V Sbjct: 188 DFQGDARTVDAHIKNLRDKLGEGAG--LILTVWGVGYRFAEVP 228 >UniRef50_D1BPS5 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BPS5_VEIPT Length = 224 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 82/221 (37%), Positives = 125/221 (56%), Gaps = 2/221 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKILL+ED + + L +D +G+ + Y +I++DIM+P +DG Sbjct: 1 MKILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGI 60 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 L +R T PV+ LTA+DS+ D+V L++GA+DYLVKPF EL AR+ A R++ Sbjct: 61 SALAQMRNDGNTTPVLLLTAKDSLQDKVTSLNTGADDYLVKPFDLEELTARIYALARRNA 120 Query: 120 A-LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + + + L ++ +V RD +ITLT KEF LL+ LAS ++ R I +W Sbjct: 121 RHAQNDIHVGPLTINVPQRTVKRDGETITLTAKEFDLLFYLASNENIVLSRQQILDHVWE 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 +++S +N +DV I+ LR K+D KLI T+RG+GY Sbjct: 181 YDYESYSNLIDVYIKNLRKKIDTDENVKLIQTVRGVGYVLK 221 >UniRef50_B7K2S9 Two component transcriptional regulator, winged helix family n=2 Tax=Cyanothece RepID=B7K2S9_CYAP8 Length = 635 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 82/226 (36%), Positives = 127/226 (56%), Gaps = 3/226 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKILLIED+ T ++Q L++ Y +DAV++G GL LA Y +I+LDIMLP +DG Sbjct: 1 MKILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDGI 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + + LR TP++ LTA++ D V GL++GA+DYLVKPF ++ELLAR++A R+ Sbjct: 61 TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120 Query: 120 AL-NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + L L ++ +H V+ + LT E+ LL L + R VI +IW Sbjct: 121 QVLPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIWT 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPF-PEKLIATIRGMGYSFVAVKK 223 ++ T+ I+ LR K+ + +I T+ G GY +++ Sbjct: 181 LDKVPGEETISSHIKALRQKLKAVGMTQNMIKTVYGFGYRLGELQE 226 Score = 85.2 bits (211), Expect = 1e-15, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 3/107 (2%) Query: 5 LIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQ 64 LI+D+ E + L+ G+ + ++S+ + + + L+ILD+ +P G + Q Sbjct: 512 LIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLNLCQ 571 Query: 65 TLRTAK---QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELL 108 +R P++ L+ D + + L GA+ YL K + EL+ Sbjct: 572 AVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTIAVEELI 618 >UniRef50_Q1IUY4 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUY4_ACIBL Length = 232 Score = 315 bits (810), Expect = 6e-85, Method: Composition-based stats. Identities = 98/218 (44%), Positives = 137/218 (62%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL+ ED +R E + GL+E G+ + +G D L +A+ ++ ++LD+MLPGMDG+ Sbjct: 1 MRILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVMLPGMDGF 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++ + LR +Q P++ LTARD+ D +RGLD+GA+DY+ KPFSFSELLAR+RA R+ Sbjct: 61 EVARRLRHKGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRRTG 120 Query: 120 AL-NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 +STL L +DS SH V R + I LTR EF LL L AG + R + +WG Sbjct: 121 PHRSSTLVCEDLTLDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGNVWG 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGY 216 + + NT+D IR LR KVD KLI T+RG GY Sbjct: 181 YDRAIENNTLDAFIRLLRQKVDTQGHPKLIQTVRGFGY 218 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 315 bits (810), Expect = 6e-85, Method: Composition-based stats. Identities = 87/231 (37%), Positives = 133/231 (57%), Gaps = 13/231 (5%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+ ED+ E + L + GY + +DGR+ + L + L+ILDIM+P MDG+++ Sbjct: 8 ILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHMDGYEV 67 Query: 63 LQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 ++ +R + P+I L+A+ S D++ GL GA+DY+ KPF+ ELLARV AQLR+ L Sbjct: 68 VRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLRRFRQL 127 Query: 122 N----------STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTV 171 N S + GL +D +V+ N I LT KEF +L+LLAS ++ Sbjct: 128 NQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKVFSAEH 187 Query: 172 IASEIWGIN-FDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFVA 220 I ++WG ++S NTV V IR LR K+ +D ++ I T+ G+GY+F Sbjct: 188 IFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAFQG 238 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 128/232 (55%), Gaps = 15/232 (6%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+L+++D + L +A + + ++G D L + + Y +++LD+MLP M G + Sbjct: 3 KVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSGEE 62 Query: 62 ILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 +L+ +R TPVI LTA+D+ D+V GL+ GA+DY+ KPFS E++AR+ A LR++ Sbjct: 63 VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122 Query: 121 LNST-------LEISGLR------MDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEII 167 + ++ + +D + VS ++ ++ LT KEF+L+ L +++ Sbjct: 123 SEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182 Query: 168 PRTVIASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 R + +WG ++ + VD+ I LR K++ DP K + TIRG GY F Sbjct: 183 SRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEF 234 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 315 bits (808), Expect = 8e-85, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 5/226 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +ILLIED+ R + + L++ G+ + G GL L ++++D+MLP +DG++ Sbjct: 20 RILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGFE 79 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH-- 119 + LR + P+I +TAR D V GL++GA+DY+ KPF EL AR+RA LR+ Sbjct: 80 CCRRLRRSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSRSA 139 Query: 120 --ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 ++I L + + V R+ ++ LTR EF+LL LAS + R + +W Sbjct: 140 GGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQLLERVW 199 Query: 178 GINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFVAVK 222 G ++ D VDV +RRLR K+ +DP +++ T+RG+GY Sbjct: 200 GYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKIQPAP 245 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 70/225 (31%), Positives = 121/225 (53%), Gaps = 6/225 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+IED + + + L Y +G++ + + + + +ILD+MLP + G + Sbjct: 7 RVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGEE 66 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 I + +R Q P++ LTA+ DR+ GLD GA+DY+ KPFS EL+ARVRA +R+ + Sbjct: 67 ICKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNNE 126 Query: 122 N-----STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 L L++D + + + LT EF+LL + +G++ R + ++ Sbjct: 127 GLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDELVVKV 186 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 G ++ T+DV I+ LR K++ + K I T+ G+GY FV V Sbjct: 187 LGYDYVGYDRTIDVHIKNLRHKIECEYY-KYIVTVYGVGYRFVKV 230 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 125/229 (54%), Gaps = 10/229 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+I+D + + + L G + +G++G+ A + LI+LDIM+P +DG++ Sbjct: 3 KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAK-EMPDLIVLDIMMPDIDGYE 61 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ---- 117 + + +R P++ L+A+ S DR++G G +DY+VKPFS ELLAR+ A LR+ Sbjct: 62 VCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKRA 121 Query: 118 ----HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 + L + +D S V I LT+KEF +L LL+ G++ + I Sbjct: 122 ILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQIY 181 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVDDPF-PEKLIATIRGMGYSFVAV 221 ++WG + + DT TV I+ +RAK+++ + I T+ G+GY + V Sbjct: 182 EKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKWEKV 230 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 128/228 (56%), Gaps = 8/228 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+++D +T L +A Y + +V +G D + + K +I+D+MLP +DG + Sbjct: 5 ILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDGIEA 64 Query: 63 LQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + +R +Q P+I LTA+ S D++ GL+ GA+DY+ KPFS ELL+R++ LR+ Sbjct: 65 TKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTDRA 124 Query: 122 ------NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 + TL+ + +D V ++N I LT EF+LL L A +++ R I + Sbjct: 125 INLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQILEK 184 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAVK 222 +WG + T VD+ I LR K++ DP +LI TIRG GY FV+ K Sbjct: 185 VWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFVSKK 232 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 314 bits (806), Expect = 1e-84, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 122/225 (54%), Gaps = 4/225 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +++IED E + GL+ G + S+GR L + + L+ILD+MLP +DG Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77 Query: 62 ILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + + LR + P+I LTAR V +RV+GL GA+DY+VKPFSF ELLARV A R+ Sbjct: 78 VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAGI 137 Query: 121 LNST--LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L+++GL ++ + V+ +I LT EF LL + R + S +WG Sbjct: 138 SRPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVWG 197 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 + D+N V+V I LR K+ D KLI T+ G+GY+ + Sbjct: 198 FTYVGDSNIVEVHISNLREKIGDH-ERKLIRTVYGVGYTLRPDDE 241 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 314 bits (806), Expect = 1e-84, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 126/227 (55%), Gaps = 6/227 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+ +D+ R + V+ L + GY + DG + LA ++I+DIM+P +DG + Sbjct: 6 ILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKLDGLEA 65 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 Q ++ P+I L+A+D V D++ G G +DY KPFS +EL RV+A LR+ A+ Sbjct: 66 SQKIKMKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSKAVP 125 Query: 123 S-----TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 L+ ++ + V +TLT KEF +LWL+AS +I R + +IW Sbjct: 126 EKKGKDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIFSRLQLLEQIW 185 Query: 178 GINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAVKK 223 +F+ D +TV V IRRLR K++ D +LI T+ G+GY F A K+ Sbjct: 186 ESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFEAPKE 232 >UniRef50_A6WIX6 Two component transcriptional regulator, winged helix family n=3 Tax=Bacteria RepID=A6WIX6_SHEB8 Length = 227 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 133/224 (59%), Gaps = 6/224 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M +LL+ED Q+ +++ +GL + + +DG G A + + +IILDIMLPG DG Sbjct: 1 MNVLLVEDEQKIADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGRDGL 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 IL++LR TP+I LTAR+ + DRV+GLD GA+DYL KPF EL AR++A LR+H Sbjct: 61 DILRSLRQQGVDTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRRHG 120 Query: 120 ALNS-TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 +E+ L++D ++ S++ S+ LT +EF LL L +++ R + +WG Sbjct: 121 GTQQHVVEVGALQLDCINRSINCQGQSVELTSREFSLLEHLMRSPNQVLTRGQLLEHVWG 180 Query: 179 INFDSDTNTVDVAIRRLRAK---VDDPFP-EKLIATIRGMGYSF 218 +FD TN VDV I+R+R+K ++ I +IRG GY Sbjct: 181 YDFDPCTNVVDVCIKRIRSKMASLEKAGKMVGAIESIRGTGYRL 224 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 79/221 (35%), Positives = 127/221 (57%), Gaps = 5/221 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L++ED+ E + L AG++++ DG L A + LI+LD MLPG+DG + Sbjct: 41 RVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGSE 100 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA- 120 + + +R+ P+I LTA S D+R+ GL++GA+DY+ KPFS EL+ RV++ LR+ Sbjct: 101 VCRRIRSRGDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIGD 160 Query: 121 --LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 +T + +D+ +HS+ R + LT +EF LL L G+ R + +WG Sbjct: 161 LTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLKSVWG 220 Query: 179 INFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 F D +TV V +RRLR K++ DP ++AT+ G+GY Sbjct: 221 WEF-GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRL 260 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 80/219 (36%), Positives = 125/219 (57%), Gaps = 4/219 (1%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L++ED R + V + G+ + SDG + L + ++ L ILDIM+P +DG + Sbjct: 5 VLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDGLAV 64 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 + +R TP+I LTA+ +D++ G + GA+DY+ KPFS LLA+ +A LR+ LN Sbjct: 65 CRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTGTLN 124 Query: 123 --STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 + L+ +GL ++ +SH V + + L+ KE+ LL L+S G + R I +WG + Sbjct: 125 DKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWGYD 184 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 + D TVD I+RLR K+ D IAT+RG GY F Sbjct: 185 YFGDIRTVDTNIKRLREKLLDKAN--YIATVRGSGYKFE 221 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 123/225 (54%), Gaps = 6/225 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M ILLIED++ V + L + + +DG G + + Y L+++D+MLP MDG+ Sbjct: 1 MAILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGF 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH- 119 + + +R + + P+I ++A+ + D+V+ GA+DY+ KPFS EL ARV+AQ+R++ Sbjct: 61 ALCEKIRASSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYER 120 Query: 120 ---ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 L+ + +D V I+LT KEF+LL LA+ G + + + + + Sbjct: 121 SYPQQEDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELYAAV 180 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDP-FPEKLIATIRGMGYSFVA 220 W + D+ TV V ++ +R K+ D K I T+ G+GY F+ Sbjct: 181 WNGDGF-DSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKFIG 224 >UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y5_RUMHA Length = 299 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 119/227 (52%), Gaps = 9/227 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D + V L +++ D + K++ L +LDIM+P + G + Sbjct: 72 KILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKISGLE 131 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH-- 119 + + +R P+I LTA+ + D+++GL GA+DY+ KPF E++ARV+AQLR++ Sbjct: 132 LCKKIRERYNYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRYKRY 191 Query: 120 -----ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 LE GL ++ +H + ++LT EF +L +L + G ++ + Sbjct: 192 NMGTVKAEEILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGNVVSAEELFH 251 Query: 175 EIWGINFDSDT-NTVDVAIRRLRAKVDDPF-PEKLIATIRGMGYSFV 219 +IW + S + NT+ V IR LR K++D F K I T+ G GY Sbjct: 252 QIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYKIE 298 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 76/227 (33%), Positives = 125/227 (55%), Gaps = 7/227 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+IED++ + + + L GY + DG DGL L+++D+MLP +DG+++ Sbjct: 16 ILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVDGFEV 75 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA-- 120 + +R + P+I ++AR S D++ L GA+DY+ KPFS EL+ARV++ LR++H Sbjct: 76 CRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRRYHRYN 135 Query: 121 ----LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 L GL +++ V D +TLT KEF+LL LA G++ + + + + Sbjct: 136 GLKEQEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSKEQLYNRV 195 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPF-PEKLIATIRGMGYSFVAVK 222 W + D TV V I+ +R K+ D + I T+ G+GY F+ K Sbjct: 196 WKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKFIGQK 242 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 120/225 (53%), Gaps = 4/225 (1%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL++ED+ E + + L AG+ +DG + LAL+ L++LD MLPG+DG + Sbjct: 14 ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGVDGLAL 73 Query: 63 LQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH--H 119 + R + PV+ LTAR D RVR L GA+DYL KPFS EL+ARV+A LR+ Sbjct: 74 CERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRRAYAS 133 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 +GL +D + V I L +EF LL LA G + R + +WG Sbjct: 134 GYRDCSPKNGLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELLERVWGY 193 Query: 180 NFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAVKK 223 +F+ T+DV +R+LR K++ DP + T+ G+GY F + Sbjct: 194 DFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFAGPPR 238 >UniRef50_A0LPJ2 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A0LPJ2_SYNFM Length = 263 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 93/223 (41%), Positives = 134/223 (60%), Gaps = 3/223 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED+++ +++ + L+EAG+ ID +G G LALK+ Y II+D++LP MDG Sbjct: 32 MRVLVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESYDAIIIDVILPVMDGL 91 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +ILQ LR TPV+ L+A+ SV DRV GL+ G +DYL KPF +ELLARV + +R+ Sbjct: 92 EILQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRRSK 151 Query: 120 ALNST--LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 T L+ L +D VS V R + L +EF LL L G ++ R I +W Sbjct: 152 VNQETVQLKAGDLWLDLVSRRVFRGDEEFRLLPQEFALLEYLMRNKGRVVTRAEILENVW 211 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 G NF TN V+V I RLR K++ P +L+ T R GY+ V Sbjct: 212 GYNFVPATNVVEVHICRLREKLERPNKPRLLQTFRKAGYALVE 254 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 131/231 (56%), Gaps = 9/231 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL++ED+ + ++ L + Y + +DG +GL L + ++ +ILD+MLPG+DG + Sbjct: 6 RILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGLE 65 Query: 62 ILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ--- 117 I + R + TP+I +AR S R+ GL+ GA+DYL KPFS EL+ARV+A LR+ Sbjct: 66 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVDA 125 Query: 118 ----HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 TL+++GL +D ++ S D + LT +EF LL+ A G++ R + Sbjct: 126 LARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDLL 185 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAVKK 223 + +WG + +TV+ I RLRAK++ DP I T+ G GY A + Sbjct: 186 NAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPGQ 236 >UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID=MPRA_MYCUA Length = 232 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 83/228 (36%), Positives = 134/228 (58%), Gaps = 7/228 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL+++D++ +E + + LS GY ++ DG + L + D ++LD+M+P +DG + Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLDGLE 63 Query: 62 ILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + + LR+ P++ LTARDSV +RV GLD+GA+DYL KPF+ ELLAR+RA LR+ Sbjct: 64 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTKL 123 Query: 121 LNST------LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 + + S L +D V+ V+R I+LTR EF LL +L + ++ R+ I Sbjct: 124 EDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRILE 183 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 E+WG +F + N ++V + LR K + +LI T+RG+GY Sbjct: 184 EVWGFDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVLRETP 231 >UniRef50_Q49XM7 Response regulator arlR n=145 Tax=Bacteria RepID=ARLR_STAS1 Length = 220 Score = 313 bits (803), Expect = 3e-84, Method: Composition-based stats. Identities = 86/216 (39%), Positives = 132/216 (61%), Gaps = 1/216 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL++ED Q ++ L Y +D DG+ GL AL + Y LI+LD+MLP ++G + Sbjct: 3 KILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLMLPNINGLE 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 I + +R + TP+I +TA+ D+V GLD GA+DY+VKPF ELLAR+RA LR+ Sbjct: 63 ICRQIRQNQTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLRR-QPQ 121 Query: 122 NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINF 181 + ++I G+ +D + V+ D + LT+ E+ LL+LL ++ R I +++WG + Sbjct: 122 KNLIDIKGIIIDKDAFKVTVDGQPLDLTKTEYDLLFLLVENRNHVLQREQIITDVWGYDT 181 Query: 182 DSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 + +TN VDV IR LR K+ +K I T+RG+GY Sbjct: 182 EVETNVVDVYIRYLRNKLKPFGKDKCIETVRGVGYV 217 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 120/229 (52%), Gaps = 11/229 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 IL+++D + + + L G+ + G++ L + + ILDIMLP +DG+ Sbjct: 4 NILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDIDGFH 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 I Q +R P+I LTA+ D++ GL GA+DY+ KPF+ E++ARV+ QLR++ Sbjct: 64 ICQKIREKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYMRY 123 Query: 122 NSTLE----------ISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTV 171 N++ E I GL ++ +H S + LT EF +LW L G+++P Sbjct: 124 NNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVPSEE 183 Query: 172 IASEIWGINFDSDTNTVDVAIRRLRAKVDDPF-PEKLIATIRGMGYSFV 219 + +WG + + NTV I RLR K+ +P K I T+ G+GY+ Sbjct: 184 LFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGYTIE 232 >UniRef50_B7K7W8 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7K7W8_CYAP7 Length = 799 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 80/221 (36%), Positives = 121/221 (54%), Gaps = 3/221 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+LL+ED+Q E + + L Y+++ +DG+ GL LA +Y LI+LD+MLP +DG Sbjct: 1 MKLLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEMFEYDLIMLDLMLPKLDGI 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 Q Q R TP++ +T +D +V+ LD+GA+DYLVKPF+ ELLARVRA LR+ Sbjct: 61 QFCQQRRKKGDLTPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRRGG 120 Query: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + L+ L ++ S V+ + I LT KE+ +L L I ++ + +W Sbjct: 121 LSSTPLLQWGPLNLNPSSCQVTYEGELIHLTAKEYGILELFLRNRNRIFSQSALIEHLWS 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFP-EKLIATIRGMGYSF 218 + N V I+ LR K+ LI T+ G+GY Sbjct: 181 FDEAPTENAVRTQIKSLRQKLKKAGASPNLIETVYGLGYRL 221 Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 3/113 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KI++++D+ + + L G+ I + D + + + L+ILD+ +P + G + Sbjct: 499 KIMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTTPDLLILDVEMPEISGIE 558 Query: 62 ILQTLRTA---KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARV 111 + Q +R P++ L+ G +GA+DY+ KP SEL+ R+ Sbjct: 559 LCQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKPIVDSELVTRI 611 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 14/234 (5%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +LL+ED ++ + + L + + + + R L + + L+ILD+M+PG+DGW Sbjct: 7 VLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPGLDGWTT 66 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 + +R + P++ LTAR DRV G + GA+DY++KPFS EL+ RV+A LR+ + Sbjct: 67 CRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRRRSSTP 126 Query: 123 ST------------LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRT 170 L L + +++L+ E+ LL LA AG ++ R Sbjct: 127 PQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNAGRVLSRD 186 Query: 171 VIASEIWGINFDSDTNTVDVAIRRLRAKVDD--PFPEKLIATIRGMGYSFVAVK 222 ++ +WG F D+ TVD +RRLR K+ P + T+RG GY F Sbjct: 187 LLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKFEVNP 240 >UniRef50_A6X2C4 Two component transcriptional regulator, winged helix family n=59 Tax=cellular organisms RepID=A6X2C4_OCHA4 Length = 255 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 88/225 (39%), Positives = 135/225 (60%), Gaps = 3/225 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL+IED++ ++ + +EAG+ D DG G LA Y ++++D MLP DG Sbjct: 21 MKILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYTLAENGSYDVLVVDRMLPKRDGL 80 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 ++ LR +TPV+ L+A VDDRV GL +G +DYL KP++FSELLARV R+ Sbjct: 81 SVVAGLRARGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 140 Query: 119 -HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 ++ + L +D ++H+ R ++ ITL +EF+LL L AG+++ RT++ +W Sbjct: 141 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 200 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 +FD TN +DV I RLR+K++ F L+ T+RG GY A + Sbjct: 201 DYHFDPQTNVIDVHISRLRSKIEKGFDGPLLHTVRGAGYMLKAGR 245 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 312 bits (802), Expect = 4e-84, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 127/228 (55%), Gaps = 7/228 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 IL+ +DN + + + V +DG + + + + + A+++LD+M+P DG++ Sbjct: 3 HILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDGYE 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ---- 117 + + +R PVI +TAR +++ GLD GA+DY+VKPFS SE++AR+RA LR+ Sbjct: 63 VCRKIRAKSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRMTKK 122 Query: 118 --HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 + L I+ L ++ +++ I+LT+KE + +W LAS ++ R + Sbjct: 123 ENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDNLLDS 182 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKL-IATIRGMGYSFVAVK 222 +WG ++ D+ TVD I+RLRAK+D I TI G+GY F + Sbjct: 183 LWGFDYFGDSRTVDSHIKRLRAKLDMLEHPNWSIKTIWGVGYKFEVDE 230 >UniRef50_A5FEG3 Two-component transcriptional regulator, winged helix family n=4 Tax=Bacteroidetes RepID=A5FEG3_FLAJ1 Length = 224 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 91/224 (40%), Positives = 132/224 (58%), Gaps = 4/224 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+L++ED + +G +E + DG+ L + ++ +++LD+MLP ++G Sbjct: 1 MKLLIVEDEPNLLSILRKGFAENNNEVSVALDGKTALEMIDNYNFDVVVLDVMLPDINGI 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +I + LR +K P++ LTA + ++ V GL+SGA+DYLVKPF F EL ARV A R+ H Sbjct: 61 EICRRLRASKNFVPILLLTALGTSENIVTGLNSGADDYLVKPFKFGELDARVNALHRRAH 120 Query: 120 ALNS---TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + I L ++ + +V RD SI LT KEF+LL+ L AG I+ R I + Sbjct: 121 QETDKIDVITIGDLEINGRAKTVKRDGESIILTAKEFKLLYYLGKNAGRIVSRDQILDNV 180 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 W INFD +TN VDV I LR KVD PF KLI T++G+GY Sbjct: 181 WDINFDMNTNVVDVYITYLRKKVDKPFKTKLIHTMKGLGYVIKP 224 >UniRef50_D1B9J7 Two component transcriptional regulator, winged helix family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9J7_THEAS Length = 226 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 88/224 (39%), Positives = 133/224 (59%), Gaps = 2/224 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L+IEDN+ + + +G E G+ +D DGR+GL L Y +ILDIMLP MDG+ Sbjct: 1 MRLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKYDCVILDIMLPEMDGF 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +++ +R PVI LTA+DSV+DRV GL+ GA+DYL KPF F EL+ARV A +R+ Sbjct: 61 EVMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRRSG 120 Query: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 S L+ L +D V+ +I + L R+EF +L LL ++ R I +++W Sbjct: 121 DQRRSILKCGPLTLDPVARECRVGDIKVPLRRREFDILELLMRYENQVFSRDKIIAQVWQ 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 +D +N VDV I+ LR K+ + ++ T+RG+GY + Sbjct: 181 KEYDGTSNVVDVHIKYLRDKLRPFNLDMMVVTVRGVGYKVANPE 224 >UniRef50_B2IXN9 Multi-component transcriptional regulator, winged helix family n=4 Tax=Nostocaceae RepID=B2IXN9_NOSP7 Length = 624 Score = 312 bits (801), Expect = 5e-84, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED+ + V L++ YV+D +DG G L +Y LI+LD++LP +DG Sbjct: 1 MRILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVILPKLDGI 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + + LR Q ++ LTA+D+ D+V GLD+GA+DY+VKPF F EL AR+RA LR+ + Sbjct: 61 SLCRQLRQEGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRRGN 120 Query: 120 AL-NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 LE L +D + V+ +I++ LT KEF LL L I R I ++W Sbjct: 121 TALPPVLEWGSLLLDPSTCEVTYADIALNLTAKEFSLLDLFLRNNQRIFSRATIVDQLWS 180 Query: 179 INFD-SDTNTVDVAIRRLRAKVDDPF-PEKLIATIRGMGYSFVA 220 D + NT+ I+ LR K+ I T+ GMGY A Sbjct: 181 AEKDPPEENTIKSHIKSLRQKLKTAGANYDFIETVYGMGYRLKA 224 Score = 79.0 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 11/117 (9%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +I+++ED+ + + Q L G + + D + L+ILD +P ++G + Sbjct: 499 RIMVVEDDPQILTVIQQSLETLGITLKTLEDSCYFWDTLTEFSPDLLILDAEMPYINGIE 558 Query: 62 ILQTLRTA---KQTPVIC----LTARDSVDDRVRGLDSGANDYLVKPFSFSELLARV 111 + Q +R K PV+ L+A + +++ GA+D + KP S L+A + Sbjct: 559 LCQVVRNDPCWKLLPVVFVVDNLSA--DIVEQI--FAIGADDCVSKPIVSSTLIACI 611 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 312 bits (801), Expect = 5e-84, Method: Composition-based stats. Identities = 77/222 (34%), Positives = 120/222 (54%), Gaps = 5/222 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL++ED +E V L + G+ D + + LI+LD MLPG G Q Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQ 63 Query: 62 ILQTLRTAK---QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ- 117 ++ L+ PV+ LTAR +DRVRGL++GA+DY+ KPFS EL+AR++A +R+ Sbjct: 64 FIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 Query: 118 -HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 A+ +E+ GL +D SH V + + EF+LL + + R + + + Sbjct: 124 SPMAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 183 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 WG N + TVDV IRRLR ++ ++++ T+RG GY F Sbjct: 184 WGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 126/232 (54%), Gaps = 11/232 (4%) Query: 1 MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDG 59 MK IL+++D + L + + + +DG L +AL+ + IILD+MLP +DG Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 60 WQILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 + + +R AK +TP++ LTA+D+ D++ GL+ GA+DY+ KPFS E++AR+RA R+ Sbjct: 61 IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120 Query: 119 --------HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRT 170 + T+ + L +D + + + LT KEF+LL R ++ R Sbjct: 121 TQPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSRE 180 Query: 171 VIASEIWGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFVAV 221 + + +WG ++ ++T VD+ + LR K++D P + T+RG GY Sbjct: 181 KLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLEDP 232 >UniRef50_C0QL69 Transcriptional regulatory protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QL69_DESAH Length = 232 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 91/227 (40%), Positives = 132/227 (58%), Gaps = 5/227 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M IL+++D+ + + + L Y I+ +G L + Y LI+LDIMLP MDG Sbjct: 6 MNILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPLMDGL 65 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +L+ +R A TPV+ LTAR V+DRV+GLD GA+DYL KPFS +EL+AR+RA LR+ Sbjct: 66 SVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRRDG 125 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 ++ L L ++++S +V+ DN I+LT KEF +L L G + R +A +WG Sbjct: 126 KRDTILTAGPLSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNMAEHVWGN 185 Query: 180 NFDSD--TNTVDVAIRRLRAKVDDPFP--EKLIATIRGMGYSFVAVK 222 FD +N VDV I+ LR K+ P +I TIRG+G+ Sbjct: 186 EFDPFSMSNFVDVHIKNLRKKISPPGDKYPPIIRTIRGIGFIIDDTP 232 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 312 bits (801), Expect = 7e-84, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 129/224 (57%), Gaps = 4/224 (1%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L+IED+ E + + + GY+ DG GL + I LDIMLP +DGW++ Sbjct: 8 VLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLPKIDGWEL 67 Query: 63 LQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH--- 118 Q +R K+ P+I LT + D+++GLD GA+DY+VKPF +EL+AR++A +R+ Sbjct: 68 CQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAVMRRADLL 127 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + + + + GL +D + + + IT+ KE LL+ LAS ++ R + +IWG Sbjct: 128 NDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVFTRQQLLDQIWG 187 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 F+ D T+DV I+R+R K+ + + I TIRG+GY F+ + Sbjct: 188 YAFEGDPRTIDVHIKRIREKLTEADAKWTIKTIRGVGYKFLEKE 231 >UniRef50_B9KBQ0 Response regulator n=6 Tax=Thermotogaceae RepID=B9KBQ0_THENN Length = 233 Score = 312 bits (801), Expect = 7e-84, Method: Composition-based stats. Identities = 79/223 (35%), Positives = 132/223 (59%), Gaps = 2/223 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++LL+ED + + + + L + + +D DG +G+Y+AL +D+ ++ILD++LP DGW Sbjct: 11 MRVLLVEDEKDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEDFDVVILDVLLPVHDGW 70 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +IL+ +R TPV+ LTA V+ RV+GL+ GA+DYL KPF EL+ARV+A +R+ Sbjct: 71 EILKAMREKGINTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVKALIRRKA 130 Query: 120 ALNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + L L +D+ + V R I LT+KE+Q+L L ++ + + +W Sbjct: 131 ENKNVKLVCGDLILDTATRKVFRGGKEIDLTKKEYQILEYLMMNKNRVVTKEELQEHLWS 190 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 + ++T+ I+ LR K+D F +K+I T+RG+GY Sbjct: 191 FDDTVFSDTLRSHIKNLRKKIDRGFKKKIIHTVRGIGYVVRDE 233 >UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C3P9_9CLOT Length = 241 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 118/219 (53%), Gaps = 3/219 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +L++ED + Q+ + + + G+ DG D L + + L+ILD+M+P +DG+ Sbjct: 22 NVLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPMDLMILDVMMPHLDGFS 81 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + + R P+I LTA+ DD+++G + GA+DY+ KPFS LLA+ A LR+ Sbjct: 82 VCKLAREMSNMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLRRSSPA 141 Query: 122 N-STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 L + + + SH V D ITLT KE++LL+ L G+I R + + IWG + Sbjct: 142 PLDALNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQIFARDQLLNRIWGYD 201 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 F+ T TVD I+ LR K+ D K I T+ GY F Sbjct: 202 FEGTTRTVDTHIKTLRQKLGDEG--KHIVTLIRSGYKFE 238 >UniRef50_C0Z5X8 Two-component response regulator n=143 Tax=Firmicutes RepID=C0Z5X8_BREBN Length = 251 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 89/221 (40%), Positives = 133/221 (60%), Gaps = 4/221 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++LLIED ++ LS + I DG GL LAL++++ +I+LD+MLPG+DG Sbjct: 29 RVLLIEDEINMARFIELELSYESFAITVAHDGHKGLKLALQEEWDVILLDVMLPGLDGIA 88 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + Q +R+ K+TP+I LTARDS+ DRV GLDSGA+DY+ KPF+ ELLAR+R R+ Sbjct: 89 VCQKIRSVKKTPIIMLTARDSITDRVFGLDSGADDYIPKPFAIEELLARIRVVFRRQEEQ 148 Query: 122 NST----LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + L GL + V+++N + LT++E+ LL ++PR V+ +W Sbjct: 149 ENVPRTMLAHRGLVVQIEGRIVTKNNQPVELTKREYDLLVTFMKNINRVLPRDVLLDTVW 208 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 G +TN VDV +R LR K+D P + I+T+RG+GY Sbjct: 209 GFEAAVETNVVDVYVRYLRNKIDFPNEDSYISTVRGIGYVM 249 >UniRef50_A5MZ62 Transcriptional regulator n=27 Tax=Bacteria RepID=A5MZ62_CLOK5 Length = 228 Score = 311 bits (799), Expect = 9e-84, Method: Composition-based stats. Identities = 99/221 (44%), Positives = 135/221 (61%), Gaps = 4/221 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL++ED + +V L GY++D DGR GL ALK Y LIILD+MLP ++G + Sbjct: 5 KILIVEDEIKIARFVQLELEHEGYMVDQTGDGRVGLEKALKGGYDLIILDVMLPSLNGME 64 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH-- 119 +L+ LR + PVI LTA+D + D+V GLD GA DY+ KPF+ ELLAR+R + Sbjct: 65 VLRRLRQISEIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKSNN 124 Query: 120 --ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 +N+ + L+MD H V+ +N I LT+KEF LL L + R I ++W Sbjct: 125 NVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEKVW 184 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 G ++ DTN VDV IR LR+K+DD F +K I TIRG+GY F Sbjct: 185 GYDYLGDTNIVDVYIRYLRSKIDDKFNKKYIYTIRGLGYQF 225 >UniRef50_B2JBG7 Two component transcriptional regulator, winged helix family n=3 Tax=Cyanobacteria RepID=B2JBG7_NOSP7 Length = 228 Score = 311 bits (799), Expect = 9e-84, Method: Composition-based stats. Identities = 76/225 (33%), Positives = 122/225 (54%), Gaps = 3/225 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL+IED++R + + + L +V+D DG +G A +Y LI+LD+MLP +DG Sbjct: 1 MRILIIEDDERIAKPLAEDLKHQHHVVDIACDGIEGWEYAQAGNYDLILLDLMLPRLDGI 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + + LR + ++ LTARD+ +++ GLD+GA+DYLVKPF EL AR+RA R+ Sbjct: 61 TLCKRLRASNYNAFILMLTARDTTPNKIIGLDAGADDYLVKPFDLEELAARIRALSRRSQ 120 Query: 120 ALNS-TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L L++D + V+ N ++LT KE+ +L +++ R+ I ++W Sbjct: 121 ETRQLILMHGDLQLDPRNCHVTYGNKPLSLTHKEYMILECFLKNPTQVLTRSAILDKLWE 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPF-PEKLIATIRGMGYSFVAVK 222 + S TV I LR K+ E I T+ G+GY + Sbjct: 181 FDKLSGEETVKTHITNLRKKLRAVGSSEDFIETVYGIGYRLCPKE 225 >UniRef50_D1VF89 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VF89_9ACTO Length = 306 Score = 311 bits (799), Expect = 9e-84, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 120/228 (52%), Gaps = 8/228 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+++D + + V L G+ ++ V G+ L D L++LD+ML +DG+ Sbjct: 80 RVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDIDGFA 139 Query: 62 ILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH- 119 + + LR P + LTARD+ D+VRGL G +DY+ KPFS SEL+ARVRA LR+ Sbjct: 140 VCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAGS 199 Query: 120 -----ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 + L + L +D + V R + LT E++LL L + A ++ R + Sbjct: 200 PVTGDGHPAPLRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRAQLLD 259 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 +WG +F + ++ I LR KVD+ LI T+RG+GY + Sbjct: 260 HVWGHDFSGEGGVLETYISYLRRKVDNV-EPPLIHTVRGVGYVLRLPR 306 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 11/233 (4%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 ++IL+++D+++ VT L+ GY + + DG GL + + +ILD+M+P MDG+ Sbjct: 11 IQILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDGF 70 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ--- 117 ++L+ LR PV+ LTA DR+ GL+ GA+DYL K FS ELLAR+RA R+ Sbjct: 71 EMLKQLRKQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHRL 130 Query: 118 -------HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRT 170 ++TL L + + + + LT E+ LL LA ++ R Sbjct: 131 SMDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARVLSRD 190 Query: 171 VIASEIWGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFVAVK 222 + + G ++D +VDV I LR K+ +DP + I T+R +GY F Sbjct: 191 QLLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMFNDPD 243 >UniRef50_O07776 Transcriptional regulatory protein tcrA n=21 Tax=Actinobacteria (class) RepID=TCRA1_MYCTU Length = 253 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 2/219 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL++ED + + + L+E G+ +D V+DGR + DY ++LD+MLPG+DG++ Sbjct: 24 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83 Query: 62 ILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH- 119 + LR + TPV+ LTAR +V DR+ GLD GA+DYL KPF+ EL AR+RA R+ Sbjct: 84 VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGPI 143 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 TLE LR+D H V R + I L+ KEF LL L R G + R + W Sbjct: 144 PRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWDA 203 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +++ +N VDV IR LR K+D PF + TIRG GY Sbjct: 204 AYEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 19/236 (8%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 I++ +D + + + L G+ + +G + + L + L++LD+M+P +DG + Sbjct: 4 NIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVDGLE 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH--- 118 + +R TP+I LTAR DR+ GL GA+DY+ KPFS EL+ RV LR+ Sbjct: 64 VCDLIRQTDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAGWR 123 Query: 119 ---------------HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRA 163 A + + GL + VS + LT KEF LL LLA Sbjct: 124 SEASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLHLLAMYP 183 Query: 164 GEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 G++ R+ + +++W I FD DT TV V +RRLR K++ +P I T+ G+GY Sbjct: 184 GKVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKL 239 >UniRef50_B8H4H9 Two-component response regulator protein n=9 Tax=Proteobacteria RepID=B8H4H9_CAUCN Length = 242 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 100/235 (42%), Positives = 136/235 (57%), Gaps = 13/235 (5%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK-----DDYA---LIILDI 52 M IL++ED+ R +++ +GL GY + DG GL A + +I+LD+ Sbjct: 1 MHILVVEDDTRVADFLERGLKAEGYKVRVARDGVSGLEAARDLDAMLRELDQRGVILLDL 60 Query: 53 MLPGMDGWQILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARV 111 MLP M G ++ QTLR + TPV+ LTA +VDDRV GL +GA+DYLVKPFSF ELLAR+ Sbjct: 61 MLPKMTGMEVCQTLRASGVLTPVLMLTALGAVDDRVTGLRTGADDYLVKPFSFEELLARI 120 Query: 112 RAQLRQHH----ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEII 167 A LR+ N TL+ + +D + VSRD + LT +E LL L S G ++ Sbjct: 121 EALLRRSRDQRAPANRTLKAGNVELDRTTMRVSRDGEEVVLTARELALLELFLSSPGRVL 180 Query: 168 PRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 R I S +WG++ D TN VDV +RRLRAK+D P I T+RG+GY Sbjct: 181 SRERILSNVWGVDEDPLTNVVDVYVRRLRAKIDPPLASSFITTVRGLGYRLEPDP 235 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 81/226 (35%), Positives = 124/226 (54%), Gaps = 6/226 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+++D+ ++ V + L AGY ++ DG L L + L++LD+MLPG+ G + Sbjct: 10 RVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGLE 69 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + + LR + PV+ LTA DRV GL+ GA+DY+VKPFS EL+ RV + LR+ Sbjct: 70 VCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRARTS 129 Query: 122 NS----TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 L LR+D + + D + LT +EF LL L G R + ++W Sbjct: 130 QPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQVW 189 Query: 178 GINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAVK 222 G +F D +TV V +RRLR KV+ DP I T+ G+GY + V+ Sbjct: 190 GWSF-GDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRYDPVR 234 >UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=Corynebacterium RepID=B1VIL1_CORU7 Length = 256 Score = 310 bits (797), Expect = 1e-83, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 119/226 (52%), Gaps = 6/226 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+L+++D + + L G+ ++ +G+ L +A ILD+M+PGMDG+ Sbjct: 31 KVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGMDGFT 90 Query: 62 ILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ--- 117 +L LR P + LTA+D V+DR+ GL GA+DY+ KPFS E++ R+R LR+ Sbjct: 91 LLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVAK 150 Query: 118 -HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 +S + + +D H V++ + L+ EFQLL L A ++ ++ I + Sbjct: 151 DDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKSKILDHV 210 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 W +F D N V+ + LR K+D +LI T+RG+GY + Sbjct: 211 WNYDFGGDGNVVESYVSYLRRKID-TKEPRLIHTVRGVGYVLRKPR 255 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 84/218 (38%), Positives = 125/218 (57%), Gaps = 5/218 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL+++D ++ + + L + GY + DG GL L + + L+ILD+MLP DGW Sbjct: 8 RILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGWS 67 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA- 120 IL+ ++ +TPVI LTARD +D V G + GA+DY+ KPF+ LLARV++ LR+ + Sbjct: 68 ILREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTNNM 127 Query: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 + S +EI L ++ SHSVS I L KE+ LL L + R + +E+WG + Sbjct: 128 VESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNEVWGYD 187 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 F D T+D I+ LR K+ I TIRG+GY Sbjct: 188 FLGDDRTIDTHIKNLRKKIGKNA----IKTIRGIGYKL 221 >UniRef50_Q01473 Protein rcaC n=1 Tax=Fremyella diplosiphon RepID=RCAC_FREDI Length = 651 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 78/224 (34%), Positives = 117/224 (52%), Gaps = 3/224 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKILL+ED+ + +T+ L+ Y++D V DG G +Y LIILDIMLP +DG Sbjct: 1 MKILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGI 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + + R P++ LTA+D++ +V+GLD+GA+DY+VKPF EL+AR+RA LR+ Sbjct: 61 SLCKRFRAQGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRRGS 120 Query: 120 ALN-STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L L ++ + V+ + + LT E+ LL LL + + ++W Sbjct: 121 NNPFPLLTWGDLLLNPSTCEVTYNGCPLNLTTMEYDLLELLLRNCQHVFSSEELLDKLWS 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSFVAV 221 TV +RRLR K+ IAT+ G GY A Sbjct: 181 SEDFPSEATVRSHVRRLRHKLVAAGAPHDFIATMHGRGYYLKAP 224 Score = 98.3 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 6/119 (5%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+++++D+Q + L G+ + ++D + + ++LD+ +P ++G++ Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586 Query: 62 ILQTLRTA---KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 + Q LR+ ++ PV+ L+ + + G +DYL KP EL R+ LR+ Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRI---LRR 642 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 115/225 (51%), Gaps = 9/225 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+++D + V L G+ + + G++ L A D L+ILD+MLP DG++ Sbjct: 22 RVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGFE 81 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + + LR + V+ LTARD+ D++ GL G +DY+ KPF+ EL+ARVRA LR+ Sbjct: 82 VCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTRR 141 Query: 121 LNST-------LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 L + + +D +H V R + + L+ EF LL ++ R I Sbjct: 142 PAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRAQIL 201 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 + +W +FD + VD + LR K+ P LI T RG GY+ Sbjct: 202 AAVWDRDFDGEPTVVDQYVSYLRRKLGQHGPP-LIHTQRGFGYAL 245 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 82/229 (35%), Positives = 125/229 (54%), Gaps = 7/229 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+L+IED++ +E L + Y + DG +G+ + ++ L++LDI+LPGM G++ Sbjct: 4 KVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMKGYE 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH-- 119 I Q +R + P+I L+ + + D+V+GLD+GA+DYL KPF F+EL AR++A LR+ Sbjct: 64 ICQKIRMLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRSKMN 123 Query: 120 ----ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 L +D S+ V ++L KE QLL LL + I + Sbjct: 124 ANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSAEKIYDQ 183 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFVAVKK 223 IWGI+ D TV V I LR K+++ P KLI T+RG GY F + Sbjct: 184 IWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKFSTADE 232 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 79/218 (36%), Positives = 129/218 (59%), Gaps = 2/218 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL+++D++ E + L G+ +DG L + L++LD+MLPG DG + Sbjct: 33 RILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSDGIE 92 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH-HA 120 + + +R P++ LTA+ D VRGL+SGA+DY+ KPF +EL+ARVRA+LR Sbjct: 93 VCRQIRGESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQK 152 Query: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 TL I+ + +D H V+R I+LT EF LL LA + ++ R ++ ++WG Sbjct: 153 APETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRELLLEQVWGYR 212 Query: 181 FDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYS 217 +DT V+V ++RLR+K++ DP +++ T+RG+GY Sbjct: 213 HAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 70/226 (30%), Positives = 118/226 (52%), Gaps = 7/226 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D Q + + L + G+ + DG+ L + ++ LI+LD+MLP M G + Sbjct: 6 KILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPKMTGEE 65 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + +R P+I LTA+ D+++ G+ GA+DYL KPFS EL+ RVRA LR+ + Sbjct: 66 VCNRIRAVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRRAYRD 125 Query: 122 ----NSTLEI--SGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 L L +D V + + + LT EF++L + S ++ R + + Sbjct: 126 FSPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFSREKLVEK 185 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVA 220 +G N++ TVD I+ +R K++ + I T+ GMGY F+ Sbjct: 186 AFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKFIP 231 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 73/220 (33%), Positives = 119/220 (54%), Gaps = 4/220 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL++ED+Q+ Q+ + L Y DG + ++++ L+ILD+ LP DG+ Sbjct: 3 KILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDGFS 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH--- 118 +L+ ++ + PVI LTAR D++ G G +DYL KPFS +EL+ R++A LR++ Sbjct: 63 VLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYRKG 122 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L+ + ++ + V ++ + LT KE+ LL LL I + I +W Sbjct: 123 RGEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQIMDRLWP 182 Query: 179 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYS 217 F D N V V +RRLR K+ +DP ++I T+ G+GY Sbjct: 183 DTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYK 222 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 120/232 (51%), Gaps = 11/232 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL++ED + V L G+ + DG+ + +++ L ILDIMLP MDG + Sbjct: 3 KILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDGSE 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 +LQ +R PVI LTA+D+ D+V GA+DY+VKPFS EL ARV+A LR+ Sbjct: 63 VLQYIRRKTSKPVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTEGT 122 Query: 122 ----------NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTV 171 + L L ++ + V I+L KEF LL LA R ++ Sbjct: 123 HHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVTIAQ 182 Query: 172 IASEIWGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFVAVK 222 I +WG F D NTV V I RLR K+ +DP + + T+RG+GY V K Sbjct: 183 IYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRLVCGK 234 >UniRef50_A6CDX9 Two component transcriptional regulator, winged helix family protein n=2 Tax=Bacteria RepID=A6CDX9_9PLAN Length = 231 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 91/220 (41%), Positives = 135/220 (61%), Gaps = 3/220 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL++ED R +++ +GLSE GY ++ DGR G L + + L+ILD LP DG Q Sbjct: 4 RILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVEDGIQ 63 Query: 62 ILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 +L+ R +T PV+ LTARD+V +RV GLD+GA+DYL KPF+F ELLARVRA LR+ Sbjct: 64 LLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRRPGQ 123 Query: 121 LNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 + LE + +R D + V+R + LT KEF LL G+++ RT I +W Sbjct: 124 ASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIYDTVWDD 183 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 ++D +NT++V ++ LR K++ ++I T+RG GY Sbjct: 184 SYDGLSNTLEVHVKELRHKLEACG-PRVIQTLRGRGYVLE 222 >UniRef50_D2Q9F0 Two-component response regulator n=20 Tax=Actinobacteridae RepID=D2Q9F0_9BIFI Length = 248 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 121/234 (51%), Gaps = 14/234 (5%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 I++++D +E + L AG+ ++ + G + + + K LI+LD+MLP +DG+ + Sbjct: 14 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 73 Query: 63 LQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + +R TPV+ LTARD D+V GL G +DY+ KPFS E++AR+RA LR+ Sbjct: 74 TRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEQ 133 Query: 122 ---NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + + + L ++ SH VSR I L+ E++LL L G ++ + I +W Sbjct: 134 VEDDPIIRVGDLEINEDSHDVSRAGQPIDLSPTEYKLLRYLMDNEGRVLSKAQILDHVWQ 193 Query: 179 INFDSDTNTVDVAIRRLRAKV----------DDPFPEKLIATIRGMGYSFVAVK 222 ++ D V+ I LR KV ++ LI T RG+GY A K Sbjct: 194 YDWGGDAAIVESYISYLRKKVDGIVVEDADGEEHKVTPLIETKRGIGYMIRAPK 247 >UniRef50_B2IZ13 Sensor protein n=11 Tax=Cyanobacteria RepID=B2IZ13_NOSP7 Length = 989 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 73/226 (32%), Positives = 114/226 (50%), Gaps = 3/226 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL++ED+ +T L+ Y ++ +DG DY LI+LD++LP +DG Sbjct: 1 MKILIVEDDGLNAYTLTNLLTNQNYAVEVATDGDAAWDCIQAYDYDLILLDVVLPKLDGI 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + + +R+ Q P++ +T R+S ++ GLD+GA+DYLVKPF EL+AR+RA LR+ Sbjct: 61 SLCRKIRSNNLQMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALLRRPA 120 Query: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 LE LR+D S + LT KEF LL L + + +I +W Sbjct: 121 VTSPPVLESGKLRLDPSSCEAVYARNLLPLTPKEFALLELFLRNSRRVFSCGMILEHLWS 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSFVAVKK 223 V I+ LR K+ L+ T+ G+GY +++ Sbjct: 181 YEDTPQEEAVRTHIKGLRQKLKAVGAPGDLVETVYGIGYRLKPLEE 226 Score = 95.9 bits (239), Expect = 9e-19, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 7/115 (6%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D+ + Q + LS G A+ + ++ILD+ LP ++G + Sbjct: 397 KILVVDDDPQIQALLQTLLSPWGLRAIALENPLQFWETLEAVAPDMLILDVELPYINGIE 456 Query: 62 ILQTLRTA---KQTPVICLTARDSVD--DRVRGLDSGANDYLVKPFSFSELLARV 111 + + +R + P++ LT + ++V GA+D++ KP EL+ R+ Sbjct: 457 LCRLVRNDSHWSELPILFLTVHSDAEMVNQV--FSIGADDFVSKPIVGPELVTRI 509 >UniRef50_B7H0F7 Transcriptional activator protein irlR n=7 Tax=Acinetobacter RepID=B7H0F7_ACIB3 Length = 223 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 107/219 (48%), Positives = 148/219 (67%), Gaps = 1/219 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL+IED + ++ +GL E+GY + V G GL + +D Y L+ILD+MLP ++GW Sbjct: 1 MRILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIEGW 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH- 119 +LQ LR + PVI LTA+D V DRV+GL+ GA+DYL KPFS+ ELLAR+++ LR+ Sbjct: 61 SVLQVLRQFSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQQY 120 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 + L IS L+MD V H V R+ I L++ EF LL L +I+ R I SE+W I Sbjct: 121 LQENELSISDLKMDLVGHKVWRNGNLIELSKTEFNLLRYLLVNKEQIVTRRQIGSEVWNI 180 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 NFD+DTN +DVA+RRLR+K+D+ + KLI TIRG+GY Sbjct: 181 NFDTDTNFIDVAVRRLRSKIDEGYEPKLIHTIRGLGYKI 219 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 116/222 (52%), Gaps = 5/222 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+L+I+D + + + + + G+ + DG + L + + IILD+MLP +DG Sbjct: 17 MKVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDGI 76 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + +R +I LTA+D D++ GL+ GA+DY+ KPF+ EL+AR+R +R+ Sbjct: 77 TLCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQEK 136 Query: 121 LN---STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + L +D S +V+R I LT KEF +L LL G + R I +W Sbjct: 137 GEVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEIFQLVW 196 Query: 178 GINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSF 218 G DT T+DV ++ LR K+ D +I T G+GY F Sbjct: 197 GEPCY-DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYF 237 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 72/226 (31%), Positives = 119/226 (52%), Gaps = 7/226 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L+++D + + L GY + A DG L + ++LD+M+PG G+ + Sbjct: 7 VLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPGPSGYDV 66 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 L+ +R + PV+ LTAR D++RGL GA+D++VK + E++AR++A LR++ Sbjct: 67 LRRIRENRDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVLRRYRRGE 126 Query: 123 S----TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L+ L +D +H V D + LT +EF+LL L A ++ R + +WG Sbjct: 127 PAPRAVLDFGRLVIDVQAHEVRVDGKPVQLTAREFELLQLFAEHPRQVFTREQLFQRLWG 186 Query: 179 INFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFVAVKK 223 D +TV V I RLR K+ +DP + I T+ G+GY F + Sbjct: 187 E--FGDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGYRFDGEAR 230 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 86/230 (37%), Positives = 116/230 (50%), Gaps = 13/230 (5%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL++ED E + + LS GY + +DGR L L + L+ILD MLP +DG ++ Sbjct: 8 ILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLDGLEV 67 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ----- 117 L+T+R K TPV+ LTAR D V GL+ GA+DYL KPF EL+ARVRA LR+ Sbjct: 68 LRTIRQTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRDQRIQ 127 Query: 118 ------HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTV 171 L L +D H V+ + LT EF +L LL G R Sbjct: 128 QLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGRAFSRNY 187 Query: 172 IASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 + IWG ++ +VD A+ RLR K+ D I T+ G+GY A Sbjct: 188 LLDTIWGQSYVGGDRSVDNAMLRLRKKLADFGDA--IETVWGLGYRLQAE 235 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 116/226 (51%), Gaps = 8/226 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 + +L++ED + LS + V G + + + +ILD+ LP DG Sbjct: 4 INVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDCDGI 63 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 +I + +R ++ L+AR S D+V GL GA+DY+ KPFS SEL+AR+ A LR+ Sbjct: 64 EICRKIREHSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRRQDR 123 Query: 121 -------LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 L I + ++ + RDN I L+ KEF+LL+ LA ++ ++ + Sbjct: 124 WLQDHDVQKDVLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVFSKSQLL 183 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 +WG + D NT+ V IRR+R K++ +P + T+ G+GY F Sbjct: 184 DAVWGYDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKF 229 >UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicutes RepID=A7GEN9_CLOBL Length = 229 Score = 309 bits (794), Expect = 3e-83, Method: Composition-based stats. Identities = 77/223 (34%), Positives = 123/223 (55%), Gaps = 6/223 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D ++ + GY + S+GR+ + K D +I+LDIM+P +DG+Q Sbjct: 4 KILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDK-DIDIILLDIMMPNIDGFQ 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + Q +R P+I L+AR S D+++GL G +DY+VKPFS EL ARV+A LR+ + Sbjct: 63 VCQKIRDKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKRI 122 Query: 122 N----STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 S + L +D S V + I T KEF ++ LLA ++ + I ++W Sbjct: 123 PLNNRSKISFGKLTLDINSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKVW 182 Query: 178 GINFDSDTNTVDVAIRRLRAK-VDDPFPEKLIATIRGMGYSFV 219 G + + D NTV I+++RAK + IAT+ G+GY + Sbjct: 183 GYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWE 225 >UniRef50_B4U9M6 Two component transcriptional regulator, winged helix family n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U9M6_HYDS0 Length = 225 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 85/218 (38%), Positives = 133/218 (61%), Gaps = 2/218 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K L++ED++ E + +G G+ +D DG L A + Y +IILD+++P +DG + Sbjct: 4 KALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKIDGVK 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA- 120 + + LR + P+I LTA+ ++D++ GL++GA+DY+ KPFSF EL+ RV+ LR+++ Sbjct: 64 VCKQLRLQSEIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYNKV 123 Query: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 + + L MD V +I LT KEF+LL +LA + I R V+ +++WGI Sbjct: 124 QEEKIVLKDLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWGIA 183 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 D D+N VDV I+ +R K++D P KLI TIRG GY Sbjct: 184 SDYDSNIVDVYIKNIRNKLED-KPPKLILTIRGRGYML 220 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 118/231 (51%), Gaps = 12/231 (5%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +L++ED + + + L GY + S+G +GL + L I+DIM+P MDG Sbjct: 5 NVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKMDGIT 64 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH--- 118 ++ LR PVI LTA+ D++ GL+ GA+DY+ KPF+ EL+ARV +QLR++ Sbjct: 65 MVMKLRENYDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRRYSKY 124 Query: 119 -------HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTV 171 ++ I GL +++ + V D I +T EF++L LL G + Sbjct: 125 LSVVSGAEQKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPGRVFSAEE 184 Query: 172 IASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAV 221 I ++W +T+TV V +R +R K++ D K + + G+GY Sbjct: 185 IYEKVWNEEA-INTDTVMVHVRNIREKIEIDTKNPKYLKVVWGVGYKIEKQ 234 >UniRef50_B4WMF1 Response regulator receiver domain protein n=2 Tax=Cyanobacteria RepID=B4WMF1_9SYNE Length = 871 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 82/214 (38%), Positives = 118/214 (55%), Gaps = 2/214 (0%) Query: 7 EDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTL 66 ED++ + Q L YV+D +DG +G +A Y LI++D MLP +DG Q+ Q L Sbjct: 2 EDDRALAGAIEQLLLSHHYVMDLATDGIEGRGMAEVFPYDLILMDWMLPKLDGMQLCQQL 61 Query: 67 RTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA-LNST 124 R TP+I LTARD+ DRV GLD+GA+DYLVKPF F ELLAR+RA LR+ ++ Sbjct: 62 RNEGNSTPIILLTARDASTDRVAGLDAGADDYLVKPFEFEELLARIRALLRRSEGIVSPV 121 Query: 125 LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFDSD 184 L+ L++D S V+ ++ I LT KE+ LL L I + ++W Sbjct: 122 LQWGDLQLDPCSSRVTCGDVPIALTPKEYALLELFLRNPERIFSLDSLLDKVWPFEDTPT 181 Query: 185 TNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +V I+ LR K+ +I+T+ G+GY Sbjct: 182 VASVRTHIKGLRQKLRQVGLSDVISTVYGLGYRL 215 Score = 103 bits (258), Expect = 5e-21, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 8/132 (6%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L+++D+ + + L G+ I+ + D K + L++LDI +P + G+ + Sbjct: 571 LLVVDDDSSMLTLLQKLLQPWGFKIEILCDPSQFWQTLEKVEPDLLLLDIKMPQLSGFDL 630 Query: 63 LQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARV-----RAQ 114 Q +R + P++ ++A GA+DY+ KP EL+ARV R++ Sbjct: 631 CQVVRSDPRWHELPILFMSAHTDEKTIQEVFSVGADDYIRKPIVAPELVARVLGWLARSR 690 Query: 115 LRQHHALNSTLE 126 R+ +L Sbjct: 691 DRRLRTEIDSLT 702 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 309 bits (793), Expect = 4e-83, Method: Composition-based stats. Identities = 70/229 (30%), Positives = 125/229 (54%), Gaps = 10/229 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +L+I+D E + L GY + +G DG+ + ++ +++LD+M+PG+DG+Q Sbjct: 3 NVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDGFQ 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH--- 118 + +R P+I L+A+ D+++GL +GA+DY++KPF+ EL+ARV++Q+R++ Sbjct: 63 VCMKIRKDYNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYVFL 122 Query: 119 ------HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 +E + ++ +H V + LT E+++L LLA+ G + I Sbjct: 123 NEKSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTVFSAEDI 182 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFVA 220 E+W + NTV V I RLR K+++ P K+I T+ G+GY Sbjct: 183 FKEVWKEKYFEGNNTVMVHIWRLREKIEENPKEPKIIETVWGVGYKIEE 231 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 81/241 (33%), Positives = 122/241 (50%), Gaps = 22/241 (9%) Query: 1 MK--ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK-DDYALIILDIMLPGM 57 MK IL+++DN E + L G+ + + G D L L + + LI+LDIM+P M Sbjct: 1 MKDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNM 60 Query: 58 DGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 G+++ +R P++ L+A+ D+V G + GA+DY+ KPF ELLAR+RA LR+ Sbjct: 61 SGYELCSQIRREWDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLRR 120 Query: 118 HHALN----------------STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLAS 161 + + + L+ L + ++SV N I L+ KEFQLL LA Sbjct: 121 YERIRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCNQKIELSTKEFQLLTFLAE 180 Query: 162 RAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 AG + R I +WG + NTV V I+ LR K++ + I T G GY F+ Sbjct: 181 NAGIVFTREQIYDRVWGYGY-GSLNTVTVHIKNLREKLE--TERQFIKTQWGTGYVFIGE 237 Query: 222 K 222 K Sbjct: 238 K 238 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 90/228 (39%), Positives = 129/228 (56%), Gaps = 11/228 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D + + L+ GY + S+G + L + K+ +L++LD+M+P +DG+ Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDGYG 66 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA- 120 + Q LR P+I LTA V DR+ GL+ GA+DY+VKPFS EL AR+R+ LR+ Sbjct: 67 VCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADKI 126 Query: 121 -------LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 + + I L++D+ V ++N + LT EF LL LL S+AGE R I Sbjct: 127 TTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRASIL 186 Query: 174 SEIWGI--NFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 E+WG DT VDV I RLRAK++ DP LI T RG GY F Sbjct: 187 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 83/226 (36%), Positives = 123/226 (54%), Gaps = 6/226 (2%) Query: 4 LLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQIL 63 LL++D+ +E L AG+ + DG L + +++LD+MLP MDG+Q+L Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 64 QTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH---- 118 +R + PVI LTA +DR+ GLD GA+DYL+KPFS EL++RVRA LR+ Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFLAP 121 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L GL +D V + + LT +EF LL+ LAS ++ R + +WG Sbjct: 122 ADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLDRVWG 181 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSFVAVKK 223 ++FD D+ TVDV + RLR K+ + + T+ G GY FV + Sbjct: 182 LDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFVVKAR 227 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 9/227 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL++ED+ + + + + +++V+DG L A D+ LI+LD+ +P ++G ++ Sbjct: 10 ILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLNGVEV 69 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 + LR K TP+I +TA+ D+V GL+ GA+DY+ KPFS EL AR +A +R+ A N Sbjct: 70 CRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSDAAN 129 Query: 123 S--------TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 L+ L+++ V+ + I L+ KEF LL LLA+ G R+ + Sbjct: 130 QQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSYSRSELLD 189 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVA 220 IWG NF +TV+ I RLRAK++ D I T G+GY F Sbjct: 190 VIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFNE 236 >UniRef50_C7IFX1 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=C7IFX1_9CLOT Length = 217 Score = 308 bits (792), Expect = 6e-83, Method: Composition-based stats. Identities = 83/220 (37%), Positives = 126/220 (57%), Gaps = 6/220 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL++ED E V + L G+ ++V DG + Y LIILDIMLPG+DG+++ Sbjct: 4 ILIVEDEVAINELVKRNLQLVGHQCNSVFDGNAAVQEIQCRSYDLIILDIMLPGLDGFEV 63 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 ++ A +TP I L+A++S+ DR++G GA+DYL KPF ELLARV A LR+ Sbjct: 64 IE---QANKTPTIFLSAKNSMPDRIKGFSMGADDYLTKPFEMLELLARVEAVLRRTQRTA 120 Query: 123 STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINFD 182 S E +++D SH V + S+ T KE++LL +L + + R + +WG +F+ Sbjct: 121 SCFEAGNVKIDFSSHQVFHNGQSVECTPKEYELLEVLVNNRNIALSRERLLELVWGYDFE 180 Query: 183 SDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 DT TVDV I++LR K++ E I T+ +GY + Sbjct: 181 GDTRTVDVHIQKLRKKLE---WEDRIKTVYKLGYRLEVSR 217 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 308 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 87/230 (37%), Positives = 125/230 (54%), Gaps = 10/230 (4%) Query: 1 MK--ILLIEDNQRTQEWVTQGLSEAG-YVIDAVSDGRDGLYLALKDDYALIILDIMLPGM 57 MK I++IED+ + + L + G + + + G GL L+ LI+LDI LP M Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60 Query: 58 DGWQILQTLRTAK---QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQ 114 +G++I + LR + P+I LTAR D++ GL GA+DY+ KPFS EL+AR+ A Sbjct: 61 NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120 Query: 115 LRQHHA-LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 LR+ +S + L +D V I LTRKEF LL LLA G ++ R + Sbjct: 121 LRRTEGTPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREYLL 180 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 +WGI++D +T T+DV IRR+R K+ I T G+GY FV K Sbjct: 181 DRVWGIDYDGETRTLDVHIRRVRQKLGIDG---YIETAVGIGYRFVEAGK 227 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 308 bits (791), Expect = 8e-83, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 118/227 (51%), Gaps = 9/227 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D + V L Y + ++ L K + L ILDIMLPG G Sbjct: 4 KILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSGLT 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH--- 118 I Q +R P+I LT +D+ D++ GL GA+DY+ KPF EL+ARV+AQLR++ Sbjct: 64 ICQKIRDKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKF 123 Query: 119 ----HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 + + SGL ++ +H + ++LT EF +L +L G ++ ++ Sbjct: 124 SGVKEQNENVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVSSELLFH 183 Query: 175 EIWGINFDSDT-NTVDVAIRRLRAKVDDP-FPEKLIATIRGMGYSFV 219 EIWG + S + NT+ V IR LR K++D K I T+ G+GY Sbjct: 184 EIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIE 230 >UniRef50_C6Q063 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q063_9CLOT Length = 367 Score = 308 bits (791), Expect = 8e-83, Method: Composition-based stats. Identities = 81/218 (37%), Positives = 134/218 (61%), Gaps = 2/218 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 + IL+++D + E++ GL + G+++ DG + + LA + + ++IILDIMLPG++G+ Sbjct: 148 IHILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIMLPGINGY 207 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH-H 119 ++ ++ +I LTA+D +DDRV+GLD GA+DY++KPFSF ELLAR+ A+LR Sbjct: 208 EVCSEIKKWVNASIIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLRNSLP 267 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 LN + I ++ +H + N + L+ E+ LL L G ++ + I ++WG Sbjct: 268 ELNDVMSIGNFYLNDKAHEIYFKNNLLELSPTEYNLLKYLLFNNGLVLSKPTILEKVWGF 327 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 +F+ D N V+V IR LR K+ D +I T+RG+GY Sbjct: 328 DFNGDVNIVEVYIRYLRDKIGD-NEHSIIRTVRGVGYK 364 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 122/228 (53%), Gaps = 10/228 (4%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 I +IED++ E +T + G+ + + +G+ ++ +++LD+M+P +DG + Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63 Query: 63 LQTLRTAKQ---TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + +R+ K+ P+I LTA+ + D++ GL+ GA+DY+ KPFSF ELLARV+A LR+ Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRSK 123 Query: 120 A-----LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 + + L++ V+ + LT +F+LL L + G+++ R I Sbjct: 124 SLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDYIIE 183 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 +W + D T+DV I++LR + + I TIRG+GY + Sbjct: 184 HVWAWDKDVYDRTIDVHIKKLRELLKEYGN--CIKTIRGVGYKWECEP 229 >UniRef50_Q83N47 Two-component system response regulator n=8 Tax=Actinobacteridae RepID=Q83N47_TROWT Length = 251 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 75/220 (34%), Positives = 120/220 (54%), Gaps = 3/220 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D ++ + L AGY + +G + L ++ LII+D+MLP M G+ Sbjct: 29 KILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDMSGFA 88 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH- 119 + LR A + PVI L+ARDS +D++ GL G +DY+ KPFS E+LARV A LR+ Sbjct: 89 ATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTKI 148 Query: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 +++T+ + L +D S+ V I L+ EF+LL ++ ++ I +W Sbjct: 149 DDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVWD 208 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +FD D++ V+ I +R K+ E +I T RG GY Sbjct: 209 YDFDGDSSIVESYISYIRRKLAAYSSETIIHTKRGFGYIM 248 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 90/224 (40%), Positives = 130/224 (58%), Gaps = 6/224 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 ILL++D Q ++V+ L +AGY +D +G L ++ Y L +LDIM+PGM+G+++ Sbjct: 8 ILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNGYEL 67 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH--- 119 + LRT PV+ L+ARDS D+V GL+ GA+DYL KPF EL+ARVRA LR+ Sbjct: 68 CRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRGQMDA 127 Query: 120 --ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 ++ G+ +D H N SI LT +EF+LL L AG++ R + E W Sbjct: 128 EPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASREDLLREAW 187 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPF-PEKLIATIRGMGYSFVA 220 G + ++T TVD I+RLR K+ +I T+RG GY F A Sbjct: 188 GWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRFRA 231 >UniRef50_A6TKQ5 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ5_ALKMQ Length = 236 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 78/230 (33%), Positives = 126/230 (54%), Gaps = 9/230 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KILL+ED++ + + L + G+V+ DG LK+ Y L++LD+MLPG+DG+Q Sbjct: 5 KILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGLDGYQ 64 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ---- 117 + Q +R TP+I LTA+ ++++V+GL GA+DY+ KPF ELLAR+ A LR+ Sbjct: 65 VCQKIRETSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRRIEQD 124 Query: 118 ----HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 + + LE L D + + + I + R+E QLL L ++ R + Sbjct: 125 HEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVFKREELI 184 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKL-IATIRGMGYSFVAVK 222 IWG +F+ + +D+ I+RLR ++ + I T+ G+GY F K Sbjct: 185 EGIWGWDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKFEVEK 234 >UniRef50_B4WPA6 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WPA6_9SYNE Length = 685 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 122/222 (54%), Gaps = 2/222 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILLIED++ + + L + Y +D DGR GL A Y L+++D+ LP +DG Sbjct: 1 MRILLIEDDEVLTSALVESLQQQRYTVDTADDGRFGLEYAESASYDLLLVDVGLPRLDGI 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + + LR TP++ +TA+D+ D+++RGLD+GA+DYL KP +EL AR+RA LR+ Sbjct: 61 SLCRELRDRNYTTPILLMTAKDAADEKIRGLDAGADDYLTKPLDINELHARLRALLRRGE 120 Query: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + S LE+ L +D VS V+ + + LT KE+ LL L + R+ I +W Sbjct: 121 VSPTSILEMGQLHLDPVSCEVTYADAPLKLTPKEYSLLELFLRNPSRVFSRSHIIEHLWT 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 + ++V ++ LR ++ + I + GMGY Sbjct: 181 FDDPPLEDSVKAHVKGLRRRLKQAGADGWIENVYGMGYKLSP 222 Score = 88.6 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 9/124 (7%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L ++D+ ++ L G+ I ++D K D L+ILDI +PG DG ++ Sbjct: 403 LLAVDDDPILLGTLSPLLEPWGFSITTLADSTKFWQTLTKVDPDLLILDIEMPGPDGIEL 462 Query: 63 LQTLRTA-------KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQL 115 +R + P++ LTAR++ V + +DY+VKP EL+ R+ +L Sbjct: 463 CHAVRNDPRDGGHWQSLPILFLTARENAAAEVFAAGA--DDYVVKPIVGPELITRINNRL 520 Query: 116 RQHH 119 + Sbjct: 521 ERAR 524 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 121/227 (53%), Gaps = 6/227 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+++D + + LS+ GY I +G++ L + LIILD+M+P MDGW+ Sbjct: 4 KILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMDGWE 63 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH-- 118 + + +R P++ LTAR D+V+GLD GA+DYL KPF EL+ARV A LR+ Sbjct: 64 VCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRAVV 123 Query: 119 --HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 L L+MD H V + + LT KEF+LL LL ++ R + +I Sbjct: 124 NQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQLLLKI 183 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPF-PEKLIATIRGMGYSFVAVK 222 WG++F D TVD I+ +R K+ +I T+ G+GY + Sbjct: 184 WGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKLKEID 230 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 124/224 (55%), Gaps = 5/224 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL+IED + + L GY + +DG +GL + + L++LD+M+P +DG+ Sbjct: 3 RILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGFA 62 Query: 62 ILQTLRT-AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + LR A P++ LTA+ ++DRV GLD+GA+DYLVKPFS ELLARVRA LR+H Sbjct: 63 LCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRHQR 122 Query: 121 LN---STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 +TL + +D V + R + T KE+ +L LL+ GE I R +W Sbjct: 123 EKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDVVW 182 Query: 178 GINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVA 220 G T TVD I LRAK++ DP + I T+ G+GY Sbjct: 183 GYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLEG 226 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 79/226 (34%), Positives = 129/226 (57%), Gaps = 9/226 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+I+D + + L + G+ + ++G L L + LIILD++LP +G + Sbjct: 5 KILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDTNGLE 64 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + Q LR ++P++ L+ + + D++ GL G +DY+ KPFS SEL+AR+ A LR++ L Sbjct: 65 LCQNLRKITESPILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRRNRIL 124 Query: 122 NS--------TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 + L I+GL +D ++++ D+ + LT KEF++L LL+ + T + Sbjct: 125 TNQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFSLTQLY 184 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 IWG++ DT TV V I LR K++ DP KLI TI+G+GY Sbjct: 185 DHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKL 230 >UniRef50_UPI00016B25CE two component transcriptional regulator, winged helix family protein n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B25CE Length = 224 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 82/224 (36%), Positives = 125/224 (55%), Gaps = 4/224 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPG--MD 58 M+IL++ED ++ +++ L GY ID + +G +A Y +I+D M+PG D Sbjct: 1 MRILIVEDEKKLARAISRTLKNEGYAIDIEYNSSEGYAMASTQPYDALIIDRMMPGDFSD 60 Query: 59 GWQILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 G +L+ LR TP I LTA ++ GLD+GA+DYL KPF+ ELLAR+RA LR+ Sbjct: 61 GLDMLKKLRKDGISTPAIVLTALGETSQKITGLDAGADDYLAKPFAIDELLARLRAILRR 120 Query: 118 HHALNS-TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 L++ L +D+ + +V DN I LT KE+ LL L +G+ + + I + Sbjct: 121 PKKAQPTILKVGKLHIDTTNRTVEFDNKKIDLTAKEYALLQYLMKSSGQTLSKEQIMEHV 180 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 W + D NTV+ I+ LR K+D+ + K I T+RG+GY Sbjct: 181 WNFDADILPNTVEAYIKALRKKIDEKYKVKYIKTVRGIGYRLEE 224 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 7/228 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+ +DN E + L + DG++ L + L+ILD+M+P + G + Sbjct: 6 KILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPKIFGTE 65 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + + +R P+I LTA+ DR+ GL+ GA+DY+VKPFS E++ R++ R+ Sbjct: 66 VCKEIRKISNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRRVGNA 125 Query: 122 N-------STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 N + + +D + + + I +T KE Q+L+LLA+ G ++ R I Sbjct: 126 NIDTNLNRKLVTFNNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVLSREEILD 185 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 ++WG ++ DT VD I+R+R K+ + + I T+ G+GY F +K Sbjct: 186 KVWGYDYFGDTRVVDTQIKRIRKKIPEEGEKWSIKTVYGIGYKFEVLK 233 >UniRef50_D2QX61 Two component transcriptional regulator, winged helix family n=3 Tax=Planctomycetaceae RepID=D2QX61_9PLAN Length = 223 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 91/220 (41%), Positives = 136/220 (61%), Gaps = 2/220 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+L+IED+ + + +GLSEAG+ G+ GL A + ++LD+MLP G Sbjct: 1 MKLLVIEDDPVLGKALERGLSEAGHFCQWERTGKSGLEQASTQQFDALVLDVMLPDTTGM 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++++ +R TPV+ LTA SVDDRV GL+SGA+DYLVKPF+F ELLAR+ A R+ Sbjct: 61 EVVRKIRHDGIGTPVLMLTALGSVDDRVAGLNSGADDYLVKPFAFPELLARLDAISRRTK 120 Query: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 +S L++ L +D + V+R++ ++LT EF LL L AG+++ R ++ +W Sbjct: 121 DRPSSQLKVGPLVLDLTNRKVTRNDSELSLTPTEFSLLEFLMRYAGQVVTRKMLCEHLWE 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +++ TN V+V I RLR K+D F E LI T+RG GY Sbjct: 181 SDWEGVTNVVEVHINRLRGKIDRGFSEPLIQTVRGRGYVL 220 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 73/225 (32%), Positives = 124/225 (55%), Gaps = 4/225 (1%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+I+D + +E + L G+ + +GR+GLY+A LI+LDIM+P + G Sbjct: 5 ILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELGGLDF 64 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 ++ +TP+I LTA+ D++ GL+ GA+DY+ KPF+ E++ARVRA LR+ + Sbjct: 65 MRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRSYKAQ 124 Query: 123 S---TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 L I + ++ + ++ ++ LT EF++L L + G + R + G Sbjct: 125 PQADVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRLDLLDRTSGQ 184 Query: 180 NFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVAVKK 223 ++ T+DV IR LR+K++ DP + I T+ G+GY F K+ Sbjct: 185 AYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRFARPKR 229 >UniRef50_D2RAW2 Response regulator receiver domain protein n=3 Tax=Actinobacteridae RepID=D2RAW2_GARVA Length = 246 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 128/234 (54%), Gaps = 14/234 (5%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 I++++D +E + L AG+ ++ + G + + + + + LI++D+MLP +DG+ + Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVMLPDIDGFTV 68 Query: 63 LQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + +R + PV+ LTARD D++ GL G +DY+ KPFS E++AR+RA LR+ Sbjct: 69 TRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQEP 128 Query: 122 NS---TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + ++++ L ++ SH V+R + I L+ E++LL L G ++ ++ I + +W Sbjct: 129 DEETHIIKVADLEINEDSHDVTRCGVPIELSPTEYKLLHYLMDNEGRVLSKSQILNHVWQ 188 Query: 179 INFDSDTNTVDVAIRRLRAKV------DDPFPEK----LIATIRGMGYSFVAVK 222 ++ D V+ I LR K+ DD ++ LI T RG+GY K Sbjct: 189 YDWGGDAAIVESYISYLRKKIDGIEITDDSGKQQKVVPLIETKRGIGYMIREPK 242 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 71/221 (32%), Positives = 121/221 (54%), Gaps = 5/221 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+++D ++ + L A Y + D + L + LI+LD MLPG G ++ Sbjct: 6 ILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGIEL 65 Query: 63 LQTLRT---AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + L+ + P+I LTA+ D++V+GL+ GA+DY+ KPFS EL+AR++A LR+ Sbjct: 66 ARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRRTD 125 Query: 120 --ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 ++ +++ GL +D +SH V+ ++ + + E++LL + + R + +W Sbjct: 126 SMGISEPIQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYTRNQLLDHVW 185 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 G N + TVDV IRRLR + ++ I T+RG GY F Sbjct: 186 GGNVYVEERTVDVHIRRLRKALSLEGHDRFIQTVRGAGYRF 226 >UniRef50_C7PAJ7 Two component transcriptional regulator, winged helix family n=3 Tax=Sphingobacteriales RepID=C7PAJ7_CHIPD Length = 266 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 87/226 (38%), Positives = 132/226 (58%), Gaps = 6/226 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL++ED + V +GL E G+ +D DGR G LA ++Y L+ILD+ LP +G++ Sbjct: 41 RILVVEDEIKVANTVKKGLEENGFEVDVAYDGRMGKSLAASNNYDLVILDLNLPHANGYE 100 Query: 62 ILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + + +R P+I LTA +DD+++ + GA+DYLVKPF F EL+AR+R L++ + Sbjct: 101 VCEVIRRKNNAIPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFLKRAGS 160 Query: 121 LNST-----LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 + I L +D V+R I LT KE+QLL LA G++I + VIA + Sbjct: 161 EVQENNQYKIVIGDLEIDREKKEVTRGGKKIALTAKEYQLLEFLALHKGKVISKLVIAEK 220 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 +W I+FD+ TN ++V + LR K+D F KL+ T GMGY Sbjct: 221 VWDIDFDTGTNVIEVYMNFLRKKIDKDFDNKLLHTKTGMGYYLAEE 266 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 79/233 (33%), Positives = 118/233 (50%), Gaps = 11/233 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 + +++ED V L AGY + DG + LA + D ++ILD+ LPG+DG + Sbjct: 65 RAMVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIE 124 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA- 120 + + LRT V+ LTAR D + GL GA+DY+ KPFS ELLAR++A LR+ Sbjct: 125 VCRRLRTFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRPK 184 Query: 121 ---------LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTV 171 + L L +D + V + + LTR EF LL LA R + R Sbjct: 185 TGQRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRRQ 244 Query: 172 IASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSFVAVKK 223 + +WG ++ D + VDV I LR K+DD + + T+RG+GY ++ Sbjct: 245 LIDRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYRMGTGEE 297 >UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacillus RepID=A0RCN7_BACAH Length = 247 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 75/227 (33%), Positives = 123/227 (54%), Gaps = 9/227 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+++D+Q +V L + G+ + + +G + L + + L ILDIM+P MDG ++ Sbjct: 21 ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDGIEL 80 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH---- 118 + +R P++ L+A+ S D+V G +GA+DY+VKPFS E +ARV+AQLR++ Sbjct: 81 CRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTYFN 140 Query: 119 ----HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 + + I GL +D VS +V +I LT+ E+ +L+L+A+ + I Sbjct: 141 QNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFTIEEIYE 200 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFVA 220 +W NTV V I RLR K+++ P K I + G+GY Sbjct: 201 SVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIED 247 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 76/220 (34%), Positives = 115/220 (52%), Gaps = 4/220 (1%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL++ED + E + L AG+ + G ++ L++LDIMLPG DG ++ Sbjct: 7 ILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPGKDGMEV 66 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 + LR+ Q P+I LTAR DR+ GL+ GA+DY+ KPFS E++ARV+A LR+ + Sbjct: 67 CKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSNTPQ 126 Query: 123 S---TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 + + +D S VS S+ LT EF +L ++ SR + R + G Sbjct: 127 EESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFSRNELLDLAIGS 186 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSF 218 F+ T+D IR LR K+ P+ + I +I G GY F Sbjct: 187 QFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKF 226 >UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63CK0_BACCZ Length = 254 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 74/222 (33%), Positives = 124/222 (55%), Gaps = 1/222 (0%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 IL+++D+ +E V+ L G+ DG D L + ++ILDIM+P MDG+ Sbjct: 33 NILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFD 92 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH-A 120 + LR P++ LTA+ +V+G G +DYLVKPF EL+ RV+A L+++ Sbjct: 93 VCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQIT 152 Query: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 ++ ++++ + ++ + V+ ++TL KEF+LL+ L S+AG R + ++WG + Sbjct: 153 VSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWGYD 212 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 F+ + T+DV I RLR K + + I TIRG+GY K Sbjct: 213 FEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEVSK 254 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 125/224 (55%), Gaps = 7/224 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL++ED+ ++ L GY + DGR GL AL + L++LD+MLP ++G+++ Sbjct: 8 ILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELNGFEV 67 Query: 63 LQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH-- 119 L+ LR TPV+ L+A+ D++ GL+ GA+DY+VKPF ELLAR++A LR+ + Sbjct: 68 LKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRRRYPS 127 Query: 120 ---ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + + +D + +V+R + LT +EF+LL + G R + S Sbjct: 128 AGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTREELLSGA 187 Query: 177 WGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFV 219 WG +++ TVD +R+LR K + DP + T+RG+GY F Sbjct: 188 WGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRFE 231 >UniRef50_C6VX71 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteroidetes RepID=C6VX71_DYAFD Length = 232 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 85/224 (37%), Positives = 124/224 (55%), Gaps = 6/224 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MK+LLIED + + L+ G+ I DG+ GL + L+ + +IILD+M+P ++G Sbjct: 1 MKLLLIEDEPNVISLIQRSLTANGHEITIAMDGQSGLQMVLQHQFDVIILDLMIPIINGM 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++ + R TP++ LTA + ++ V GLDSGA+DY+ KPF +EL AR+R +R+ Sbjct: 61 EVCRRARNAQVTTPILMLTALGTTENIVSGLDSGADDYMTKPFKLAELEARLRTLIRRGK 120 Query: 120 ALNS-----TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 L + L +D V+ +V R I LT EF+LL L S ++ R I Sbjct: 121 EPEKEKNDKVLTLGDLVLDKVTKTVKRGGQPIELTATEFRLLEYLLSNTNRVLNRMEILE 180 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +W INF+ TN VDV I LR K+D KLI T+ GMGY Sbjct: 181 NVWDINFNLGTNVVDVYINYLRKKIDKNHDIKLIHTVFGMGYVI 224 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 83/225 (36%), Positives = 129/225 (57%), Gaps = 8/225 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL++ED+ + E L G+ ++ +DGR GL +A +D Y LI+LDIMLPG+DG+ Sbjct: 3 KILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDGFA 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA- 120 + + LR K+ PV+ +TAR D +RGL GA+DY++KPF+ +EL+ARVR+ + ++ Sbjct: 63 VCRELRRYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYERI 122 Query: 121 ------LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 ++ L + ++ V D + TR+EF+LL LA + R + Sbjct: 123 LASVKPEQHVVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSREALFE 182 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSF 218 +WG D+ TV V I R+R K+ +DP + + TIRG GY F Sbjct: 183 RVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRF 227 >UniRef50_A7ZEI3 Transcriptional activator protein CopR n=9 Tax=Bacteria RepID=A7ZEI3_CAMC1 Length = 219 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 88/222 (39%), Positives = 126/222 (56%), Gaps = 5/222 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL++ED +T+ L + GY +D+ +G + + Y LI+LD+M+P MDG Sbjct: 1 MKILVVEDEIDLNSVITRHLKKNGYSVDSACNGEEAMDFTAVAHYDLIVLDLMMPVMDGL 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-H 118 LQ R AK TPV+ LTA+D VDD V+GLD+GA+DYLVKPF F ELLARVR +R+ Sbjct: 61 TFLQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRRNS 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + S + L++D SV I LT KE+++L L G I+ R I +W Sbjct: 121 GNVASEICAGELKIDLSKKSVEFSGEQIELTGKEYEILEFLMLNKGRILTRDQIKEHVWD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 ++ +N +DV I+ +R K+ + I T RG+GY Sbjct: 181 FDYTGGSNVIDVLIKNIRKKLGECEA---IQTKRGLGYVVKD 219 >UniRef50_Q8A9Y3 Two-component system response regulator n=8 Tax=Bacteroidales RepID=Q8A9Y3_BACTN Length = 245 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 86/222 (38%), Positives = 129/222 (58%), Gaps = 3/222 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KILL ED ++ +GL E G+ + DG G + ++ + L+ILDI++P ++G + Sbjct: 24 KILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMPKINGLE 83 Query: 62 ILQTLRT--AKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + R Q PVI LTA + +D V+GLD+GA+DYLVKPFSF EL AR++A LR++ Sbjct: 84 LCHLYRQMFGYQAPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRRNK 143 Query: 120 AL-NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + L L +D + R + I LT KE++LL + G + R + ++W Sbjct: 144 ETVTNQLTCDNLVLDCNTRRAKRGDADIDLTVKEYRLLEYFMTHQGVALSRITLLKDVWD 203 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 NFD++TN VDV + LR K+D F +KLI T+ G+GY A Sbjct: 204 KNFDTNTNIVDVYVNYLRVKIDRDFDKKLIHTVVGLGYIMNA 245 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 114/223 (51%), Gaps = 7/223 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+++D+Q + + L + + S+ + + +ILDIM+PG +G+ Sbjct: 6 ILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGENGFAF 65 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 + +R P++ L+AR + D++RGL G +DY+VK S E++ARV+A LR+ + Sbjct: 66 CRRIRAKSDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSASNQ 125 Query: 123 S----TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 LE L ++ + ++ D ++ LT KE++LL L + + ++W Sbjct: 126 PPTETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQLLDKLW- 184 Query: 179 INFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVA 220 + D +TV V + RLR K++ +P + I + G+GY F Sbjct: 185 -DGVGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRFEG 226 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 8/230 (3%) Query: 1 MK--ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMD 58 MK + ++ED+ V L AG+ + G + + K L +LDIM+PG D Sbjct: 1 MKQTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGAD 60 Query: 59 GWQILQTLRTAKQ---TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQL 115 G +I + +R ++ TPVI LTA+ S D++ GLD GA+DY+ KPFS EL+AR++A L Sbjct: 61 GLEICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVL 120 Query: 116 RQHHAL--NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 R+ + + + +D+ + +++ +T T EF+LL LA G + R + Sbjct: 121 RRFERPLPPAVVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFTRDQLL 180 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFVAVK 222 +W +VDV +RR+R K+++ P + + T+RG GY F K Sbjct: 181 DAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRFEVPK 230 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 75/225 (33%), Positives = 110/225 (48%), Gaps = 5/225 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 I++++D Q +E L GY DG L L LI+LDI +PGMDG ++ Sbjct: 4 IMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDGLEV 63 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR----QH 118 + +R+ PVI L+ R S D+V + GA+DY+ KPF F EL AR++A +R Sbjct: 64 CREIRSQLSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRMYAMNP 123 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + L L +D + + SI+LT KE +LL A ++ + IW Sbjct: 124 SSEGPKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHEQLYDRIWN 183 Query: 179 INFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFVAVK 222 ++ TV V I LR K++ P + I T+RG GY FV K Sbjct: 184 LDATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRFVPGK 228 >UniRef50_A6M1X5 Two component transcriptional regulator, winged helix family n=8 Tax=Firmicutes RepID=A6M1X5_CLOB8 Length = 229 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 83/220 (37%), Positives = 134/220 (60%), Gaps = 2/220 (0%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+++D + +++ GL GY++ DG + + LA K + ++ILDIMLPGMDG+++ Sbjct: 11 ILIVDDEKSIVDFIKMGLEGEGYLVYEAYDGNEAIELARKINPNIVILDIMLPGMDGYEV 70 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH-HAL 121 ++ + +T VI LTA D VDD+V+GLD GA+DY+ KPFSF ELLAR+ A++R L Sbjct: 71 CSIIKKSIKTSVIMLTALDEVDDKVKGLDIGADDYMAKPFSFKELLARINARIRNSFPEL 130 Query: 122 NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGINF 181 + I ++D +H ++ + L ++ LL L G + +++I ++WG +F Sbjct: 131 SDITNIGNFKVDDKAHEITYREKVLDLPPTQYNLLSFLLMNNGIALSKSLILEKVWGYDF 190 Query: 182 DSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 + + N V+V IR LR K+ D +I T+RG+GY VA Sbjct: 191 NGEDNIVEVYIRYLRDKIGD-KDHNIIKTVRGVGYKMVAQ 229 >UniRef50_B7IIP6 Transcriptional regulatory protein ResD n=34 Tax=Bacteria RepID=B7IIP6_BACC2 Length = 221 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 76/221 (34%), Positives = 129/221 (58%), Gaps = 6/221 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 IL++ED+Q QE + Q L Y + SDG +G+ K + LI+LD+M+P ++G++ Sbjct: 5 HILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNGFE 64 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH--H 119 + + +R+ P+I LTA + +D+++G D G +DY+ KPFSF L+ RV A LR+ Sbjct: 65 VSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDK 124 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 +N+ L +R+D ++ V +++ I LT KEF++L LL +++ R I ++WG Sbjct: 125 NVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWGY 184 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 ++ +T +D I+ LR K+ P I TI+G+GY Sbjct: 185 DYFGETRIIDTHIKNLRKKLAIP----YIKTIKGIGYKIDE 221 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 7/223 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+++D Q + V L AG+ G + A + +++LD+ LP +DG + Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH-- 119 + + +RT ++ LTAR S DD++ GL GA+DY+ KPFS EL+ RV A LR+ Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161 Query: 120 ----ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 + + L + L +D V+H V ++ LTR EF+LL LA R G+++ R + +E Sbjct: 162 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 221 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYS 217 +W + D VDV I LR K+ D I T+RG+GY Sbjct: 222 VWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >UniRef50_C9XJX9 Two-component system response regulator n=108 Tax=Firmicutes RepID=C9XJX9_CLODC Length = 222 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 76/219 (34%), Positives = 125/219 (57%), Gaps = 6/219 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+IED+ QE +++ LS GY +D +DG +G+ + Y L+ILDIM+P +DG+ + Sbjct: 5 ILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIMMPNLDGYGV 64 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL- 121 + +R + P+I LTA + D+++G D +DY+ KPFSF+ L+ RV A LR+ + Sbjct: 65 CKMIRKSSSVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRRSNKTI 124 Query: 122 -NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGIN 180 + + L++D ++ D I LT KEF +L L + ++I R + IWG + Sbjct: 125 NDKFIVFEKLKLDLNTYIAEIDGEPIELTLKEFNILKALIEKYPQVITREGLLDSIWGYD 184 Query: 181 FDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 + DT VD I+ +R K+ P I T++G+GY+ Sbjct: 185 YYGDTRIVDAHIKNIRKKISLP----YIKTVKGIGYTLE 219 >UniRef50_B5VWD3 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5VWD3_SPIMA Length = 628 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 3/221 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED+ + + L+ Y +D V+DG+ G Y L++LDI LP +DG Sbjct: 1 MRILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPLLDGI 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 + LR+ Q P++ LTAR++ D+V+GLD+GA+DY+VKP +EL AR+RA LR+ Sbjct: 61 SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 A +S L + +D+ + VS + + LT KE+ LL LL I ++W Sbjct: 121 EATSSVLTYEKMVLDTSTCDVSYNGKPLKLTPKEYGLLELLMGNRQRTFSIDKILDKLWT 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFP-EKLIATIRGMGYSF 218 + NTV I+ LR K+ + I T+ G+GY Sbjct: 181 FDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRL 221 Score = 110 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 65/130 (50%), Gaps = 3/130 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++++++D+ + + L G + D R L++LDI +P ++G + Sbjct: 497 RVMIVDDDPQMLAAIQGLLQPWGIQTITLDDPRQFWKTLESSHPDLLVLDIEMPHLNGIE 556 Query: 62 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 + Q +R + PV+ +TA+ R + +GA+DYL KPF+ SEL R+ +L++ Sbjct: 557 LCQIVRNDPRWRGLPVLFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLKRT 616 Query: 119 HALNSTLEIS 128 L + + + Sbjct: 617 QNLATRTDFA 626 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 125/222 (56%), Gaps = 6/222 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L+IED Q + + L + GY + A DG GL L K + +++LD+MLP M G +I Sbjct: 10 VLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMSGEEI 69 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 + +R ++TP++ LTA+ S D+++ GL GA+DY+VKP S E++AR++ LR+ Sbjct: 70 ARKIRKEQETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRVGKEP 129 Query: 123 -----STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + + +D+++ + I+LT+ EF +L LA ++ R +A I+ Sbjct: 130 GRIQQEIITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPKKVFSRENLADRIY 189 Query: 178 GINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 G ++ D+ T+D I+ LR K++ +P I T+ G GY F Sbjct: 190 GYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQF 231 >UniRef50_UPI0001B559F0 two-component system, response regulator n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B559F0 Length = 247 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 82/227 (36%), Positives = 124/227 (54%), Gaps = 7/227 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L++ED+ + +T L AGY + + SDGR ++ A LI+LD+MLP DG+++ Sbjct: 13 VLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGFRL 72 Query: 63 LQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + LR TPV+ LTAR V+DR+ GL SG +DY+ KPF E+L RVRA LR+ A Sbjct: 73 TRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGAP 132 Query: 122 NST------LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 ST L +GL +D +H V + L+ EF+LL + ++ + I Sbjct: 133 ASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQR 192 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 +W +F DT VD ++ LR K+D L+ T+RG+GY + Sbjct: 193 VWRYDFSGDTRIVDTYVKNLRRKLDHGGAPALLHTVRGVGYCLRLPR 239 >UniRef50_A5EYW4 Transcriptional regulator n=31 Tax=Bacteria RepID=A5EYW4_VIBC3 Length = 224 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 89/221 (40%), Positives = 128/221 (57%), Gaps = 3/221 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILLIED++R ++ +GL G+ I + DG+ GL + L+ILD MLP +DG Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEPDLLILDRMLPHVDGL 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + Q +R ++ L+A V++R++GL +GA+DYL KPF F ELLAR+ A R++ Sbjct: 61 TLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIEALQRRNI 120 Query: 120 AL--NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 ++ L + L + + V R I LT KE +L L + G I R I + +W Sbjct: 121 QTHTSNKLRFADLELCLSTMRVYRAEQPIELTAKEISILELFLRKPGHIFSRERILANVW 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 GI+ D TN VDV +RRLR K+D PF + LI T RGMGY Sbjct: 181 GIHQDPLTNVVDVYMRRLRKKIDMPFAQPLIQTKRGMGYYL 221 >UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID=B2TJU3_CLOBB Length = 230 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 121/226 (53%), Gaps = 8/226 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 IL+++D + + + L GY + G + L + K++ L++LD+M+P MDG++ Sbjct: 4 NILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDMDGFE 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH--- 118 + +R P++ L+A+ D+++G+ +GA+DY+ KPF+ EL R+RA R+ Sbjct: 64 VCSKVRERYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRRTYFL 123 Query: 119 ----HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIAS 174 + + I + +D H ++ N ++LT +EF++L+LLA+ G + I Sbjct: 124 NTKIQVSDDIIRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVFSAEEIFE 183 Query: 175 EIWGINFDSDTNTVDVAIRRLRAKVDDP-FPEKLIATIRGMGYSFV 219 ++W + NTV V + RLR K++ K+I T+ G+GY Sbjct: 184 KVWKEKYYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYKIE 229 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 123/226 (54%), Gaps = 10/226 (4%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 ILL++D+ Q LS+ G+ + + G + + LA + LIILD+ LP MDG+++ Sbjct: 6 ILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDMDGFEV 65 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 + +RT + P++ L+ R+ D++ G G +DY+ KPFS L+A+V++ +R++ L+ Sbjct: 66 CRIIRTKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRRYKELS 125 Query: 123 ST---------LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 + L L +D V+R+ I+L KEFQLL LA AG + + Sbjct: 126 GSPKAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSAEHLF 185 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 IWG + D TV V I LR K++ DP + I T+RGMGY F Sbjct: 186 DSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKF 231 >UniRef50_Q52990 Phosphate regulon transcriptional regulatory protein phoB n=193 Tax=cellular organisms RepID=PHOB_RHIME Length = 227 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 121/224 (54%), Gaps = 5/224 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KI ++ED + + L G+ +D + G + + L+ILD MLPG+ G + Sbjct: 4 KIAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWMLPGVSGIE 63 Query: 62 ILQTLRTAKQT---PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 + + LR +T P+I LTAR +RVRGL +GA+DY+VKPFS EL+ARV+A LR+ Sbjct: 64 LCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRRA 123 Query: 119 HAL--NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 ++ L + +D +H V R + + L EF+LL L S G + R+ + + Sbjct: 124 KPEVLSTLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGV 183 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 WG + D TVDV + RLR ++ +I T+RG GYS + Sbjct: 184 WGHDIYVDERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSLES 227 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 70/223 (31%), Positives = 111/223 (49%), Gaps = 7/223 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 +L+++D + + L+ G+ + ++G + L +A + +I+LD+MLP MDGWQ+ Sbjct: 16 VLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQV 75 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH---- 118 + +R ++ LTAR D+V GL GA+DYL KPF ELLARV + +R+ Sbjct: 76 CKKIREKDHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSAITQ 135 Query: 119 --HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + LE LR+ V + S+ T+KEF L LA R + + I Sbjct: 136 SIRRQEAALEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFSREELVNLI 195 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPF-PEKLIATIRGMGYSF 218 WG ++ + VD I+ +R K I T+ G+GY F Sbjct: 196 WGDEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKF 238 >UniRef50_Q2RYR0 Response regulator receiver domain protein n=2 Tax=Rhodothermaceae RepID=Q2RYR0_SALRD Length = 247 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 90/225 (40%), Positives = 134/225 (59%), Gaps = 3/225 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +LL+ED +V QGL+E GY + V GR GL A + L++LDI LP + G + Sbjct: 6 HLLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGIDLVLLDIRLPDLSGLE 65 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + + LR + + P++ LTA D+V+DRVRGL +GA+DYL KPF+F ELLAR+ A LR+ Sbjct: 66 VCERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRRVDR 125 Query: 121 LNS--TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + +E L +D + + + D + LT EF LL L +R G+ + R I E+WG Sbjct: 126 PSEPGRVEDGPLVLDPAARTCTFDGEEVDLTPTEFDLLAFLMARHGQALSRDTIHQEVWG 185 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 +FD TN +DV + +R K+D+ E I T+RG+GY + A + Sbjct: 186 HDFDRGTNLIDVYVNYVRRKLDEVGCEAPIETVRGIGYRYTACSE 230 >UniRef50_B5D1V8 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=B5D1V8_9BACE Length = 231 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 86/227 (37%), Positives = 125/227 (55%), Gaps = 7/227 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+IED++R + + GL E GY DG GL L + L+I DI+LP +DG+++ Sbjct: 4 ILIIEDDKRVADLLKTGLEENGYHTMVAYDGAMGLRLFQSHSFQLVISDIILPKLDGFEL 63 Query: 63 LQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + +R A PV+ LTA S DD++ G D+GA+DY+VKPF F EL AR++ L++ Sbjct: 64 CKEIRKANPHIPVLMLTALGSTDDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRKAEA 123 Query: 122 ------NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 L L++D+ V R I L+ KE+ LL + A +I R IA + Sbjct: 124 TVSVVAPEKLTYKDLQIDTNRREVMRQGNLIRLSPKEYNLLTYMVQNAERVISRIEIAEK 183 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 +W +FD+ TN +DV I LR K+D F KLI T G+G+ K Sbjct: 184 VWNTHFDTGTNFIDVYINYLRKKIDKDFETKLIHTKPGIGFILTDEK 230 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 87/229 (37%), Positives = 127/229 (55%), Gaps = 10/229 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL+++D + V G+ + G D L + Y L+ILDI LPG+DG+ Sbjct: 3 RILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGFG 62 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 +L+ +R + PVI LTAR DRV GL+ GA+DY+VKPFS EL+ARVRA LR+ Sbjct: 63 VLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTAE 122 Query: 121 LNS-TLEISG-------LRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 + +I L++D+ + ++ +TL KEF LL LAS G++ R V+ Sbjct: 123 ASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREVL 182 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFVA 220 ++WG + D TVDV IRRLR+K+ + LI T G+GY F+ Sbjct: 183 LGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFIE 231 >UniRef50_B5W2T9 Multi-component transcriptional regulator, winged helix family n=2 Tax=Arthrospira RepID=B5W2T9_SPIMA Length = 774 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 82/225 (36%), Positives = 124/225 (55%), Gaps = 3/225 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKILL++D+Q + +++ L YV+D +DG G +Y+L+ILDIMLP ++G Sbjct: 1 MKILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGI 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + + LR+ Q PV+ LTARDS +D+V GLD+GA+DYLVKP EL+AR+RA LR+ Sbjct: 61 ALCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRRAT 120 Query: 120 -ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 +L + L ++ +S + LT KE+ L+ L + I +W Sbjct: 121 ISLPPVIHWGDLTLNPAKCEISYQKSVLPLTPKEYGLMELFIRSPYRVFSYDSIIEHLWS 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDP-FPEKLIATIRGMGYSFVAVK 222 I + NTV I+ LR K+ D KLI + G+GY ++ Sbjct: 181 IEEPAADNTVRAHIKSLRNKLKDAGGDPKLIENVYGIGYRIKSLD 225 Score = 91.7 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 58/127 (45%), Gaps = 3/127 (2%) Query: 8 DNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLR 67 D+ + E + L G + ++ R + + L+I+D+ +P +G + Q +R Sbjct: 493 DDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGIDLCQVIR 552 Query: 68 ---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALNST 124 + P++ LT + R +GA+D++ KP EL+AR+ ++L + + Sbjct: 553 NEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARLFSRLHRSRLWRNI 612 Query: 125 LEISGLR 131 EI L Sbjct: 613 AEIDTLT 619 >UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactobacillus RepID=B2GF54_LACF3 Length = 229 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 67/227 (29%), Positives = 117/227 (51%), Gaps = 8/227 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDD-YALIILDIMLPGMDG 59 MKIL+++D++ + + GY +G+D + +L+ILD+M+P M+G Sbjct: 1 MKILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKLNTMPDISLVILDLMMPEMNG 60 Query: 60 WQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +++ +R P++ L+A+ + D+++GL +GA+DY+ KPF+ E++ARV++ LR+ Sbjct: 61 MDVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSE 120 Query: 120 AL-----NSTLEISGLRMDSVSHSV-SRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 L + L ++ SH V + I LT EF +L+LLAS + I Sbjct: 121 NQVTNDKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGILYLLASHPNRVFSADDIF 180 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVDDP-FPEKLIATIRGMGYSFV 219 +W TV V + LR K++ EK+I T+ G+GY Sbjct: 181 ERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVE 227 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 85/231 (36%), Positives = 131/231 (56%), Gaps = 10/231 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K+L+IED ++ L++ GY + G GL AL+ ++ LIILDIMLPG++G++ Sbjct: 4 KVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLNGFE 63 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 IL LR +TP+I LTAR++ ++ V+GL GA+DY+ KPF +ELLARV A LR+ Sbjct: 64 ILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQQ 123 Query: 121 LNST--------LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 +S + + L + + V + ++ L KEF++L L R G +I R + Sbjct: 124 DDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMVITRDDL 183 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 + +WG ++ TVDV + LR K++ I +IRG+GY V KK Sbjct: 184 MNVVWGFDYIGGQRTVDVHVSSLRKKLE-LGQSVQIESIRGVGYKLVMSKK 233 >UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria RepID=C4ZFF8_EUBR3 Length = 248 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 75/228 (32%), Positives = 118/228 (51%), Gaps = 11/228 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+I+D Q + + L YV+ D + D L ILDIMLP M+G+ Sbjct: 21 KILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNGFS 80 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 + Q +R P+I LTA+ D++ GL GA+DY+ KPF E++ARV+AQLR++ Sbjct: 81 LCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKKY 140 Query: 122 NS---------TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 + L + L ++ +H D ++LT EF +L +L S AG ++ + Sbjct: 141 SPGIITEKIPSELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSSAGNVVSIEEL 200 Query: 173 ASEIWGINFDS-DTNTVDVAIRRLRAKVDDPFP-EKLIATIRGMGYSF 218 +W + S +++T+ V IR LR K++D + I TI G+GY Sbjct: 201 FHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 248 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 76/222 (34%), Positives = 122/222 (54%), Gaps = 8/222 (3%) Query: 5 LIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQ 64 L+ED+ E V L++ G+ I DG +G+ L + Y L++LDIMLP ++G L+ Sbjct: 2 LVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFLK 61 Query: 65 TLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALNS- 123 +R PV+ ++A+D D+ GL GA+DY+ KPFS EL ARV+A +R+ ++ Sbjct: 62 IIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYSAE 121 Query: 124 ------TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 + I L +D + SV ++ + LT E+QLL L AS ++ + I +W Sbjct: 122 EPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIYRSVW 181 Query: 178 GINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 + D N ++V +RRLR K++ DP + I T+ G+GY Sbjct: 182 NEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 128/224 (57%), Gaps = 5/224 (2%) Query: 1 MK-ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDG 59 MK +L++EDN ++ + + L E GY + S+G++GL A L++LD+M+PGMDG Sbjct: 22 MKTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDG 81 Query: 60 WQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + L+ R +Q PVI LTARD+ D+V GL+ GA+DY+ KPFS +ELLARVRA LR+ Sbjct: 82 LEFLRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRSS 141 Query: 120 A--LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 N+ L L +D + + + LTR EF+L+ G + R + ++ Sbjct: 142 EPLPNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRLELLEQL- 200 Query: 178 GINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFVA 220 T+DV +R LRAK++ +P +LI T+ G+GY Sbjct: 201 QEEALGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRLNP 244 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 77/227 (33%), Positives = 127/227 (55%), Gaps = 10/227 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL++ED+ E L + + + +DG GL ++ Y LIILD+MLP MDG+ Sbjct: 3 KILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDGFD 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 IL+ + K PV+ ++A+ D+++GL GA+DY+ KPFS EL+ARV++ ++ + L Sbjct: 63 ILRIIHDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQNYERL 122 Query: 122 ---------NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 N+ + I GL ++ S V ++ + L +KEF LL +A + + + Sbjct: 123 KNKFSDKLNNNVISIRGLEINKDSRQVIINDKEVNLAQKEFDLLLHMAQYPNRVFGKDEL 182 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 IWG++ D+ TV V IRR+R K++ +P + I T+ G+GY Sbjct: 183 FESIWGLDSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYRI 229 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 86/224 (38%), Positives = 126/224 (56%), Gaps = 4/224 (1%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL++ED++ + + + L GY + DGR L L + LIILD+MLP M G ++ Sbjct: 5 ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMSGLEV 64 Query: 63 LQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHAL 121 Q LR+ TP+I LTAR D+V GL GA+DYL KPF+ ELLAR+ A LR+ H Sbjct: 65 CQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTHQS 124 Query: 122 NST--LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 + + + L +D SV ++ + L+ +EFQ+L L AG+ + R I E+WG Sbjct: 125 KPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIYQEVWGY 184 Query: 180 NFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFVAVK 222 + T+D I RLR+K++D P + I T+ G GY FV + Sbjct: 185 DTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFVVPE 228 >UniRef50_D1C5Q5 Two component transcriptional regulator, winged helix family n=52 Tax=Bacteria RepID=D1C5Q5_SPHTD Length = 244 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 85/231 (36%), Positives = 130/231 (56%), Gaps = 9/231 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPG-MDGW 60 IL++ED + ++ +GL GY + G L D LIILDIMLPG +DG Sbjct: 6 HILVVEDERAIASFLRRGLVFEGYRVTVADTGARALDAVRDDPPDLIILDIMLPGDIDGL 65 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 ++ + +R A + P++ LTARD V DRV GLD+GA+DYL+KPF+F ELLARVRA LR+ Sbjct: 66 EVCRRIRAAGEGMPILMLTARDEVADRVAGLDAGADDYLIKPFAFEELLARVRALLRRQE 125 Query: 119 ------HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVI 172 A + + L +D+ S R + I LT +E++LL L +++ R VI Sbjct: 126 RRRAEEPADDGVYRFADLTLDTTSRFAYRGDRRIELTTREYELLLLFMRHPNQVLTRDVI 185 Query: 173 ASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 +WG +F ++N ++V + LR ++ +L+ T+RG GY+ + Sbjct: 186 MERVWGYDFPGESNVLEVYVSNLRRHLEAGGEPRLLQTVRGAGYALRLPTE 236 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 304 bits (780), Expect = 1e-81, Method: Composition-based stats. Identities = 84/222 (37%), Positives = 129/222 (58%), Gaps = 5/222 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKD-DYALIILDIMLPGMDGW 60 K+L+IED + ++ + L GY + +G++GL L ++ D +I+LDIMLP + GW Sbjct: 4 KVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDISGW 63 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 +L+T+R + PV+ +TAR D++ G + GA+DY+VKPFS E++ARV+A L + + Sbjct: 64 SLLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRTYG 123 Query: 121 LNS--TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 E G+ MD S V+ D I LT KEF LL LL G+++ R +E+WG Sbjct: 124 SQDDGKTEYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSREKCLNEVWG 183 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 +F D TVD I++LR K+ + LI T+ G+GY Sbjct: 184 YDFYGDLRTVDTHIKQLREKLGE--KRNLIKTVWGIGYKLEG 223 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 304 bits (780), Expect = 1e-81, Method: Composition-based stats. Identities = 85/233 (36%), Positives = 134/233 (57%), Gaps = 11/233 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+IED ++ L+ GY + G+ G AL+ D+ LI+LD+MLPGM+G++ Sbjct: 4 RLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMNGFE 63 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH-- 118 I+ LR+ +TPVI LTA+++ ++ V+GL SGA+DY+ KPF +ELLARV A LR+ Sbjct: 64 IMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRSTG 123 Query: 119 --------HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRT 170 NS + + L + + V+ + ITL KEF++L LA + G ++ R Sbjct: 124 KEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMTRD 183 Query: 171 VIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 + + +WG ++ TVDV + LR K++ I +IRG+GY V KK Sbjct: 184 DLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDPQSVHIDSIRGVGYKLVVNKK 236 >UniRef50_B4B6S6 Multi-component transcriptional regulator, winged helix family n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4B6S6_9CHRO Length = 638 Score = 304 bits (780), Expect = 1e-81, Method: Composition-based stats. Identities = 84/225 (37%), Positives = 129/225 (57%), Gaps = 2/225 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED+ T+ +TQ LS Y +D DG+ GL LA +Y L +LD+++P +DG Sbjct: 1 MRILLMEDDPLTRTVLTQTLSNHHYNVDVAKDGKSGLQLAQTYNYDLFLLDVVVPVLDGI 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + Q LR+ Q P++ LTA+DS D++ GLD+GA+DY++KP + L+AR+RA LR+ + Sbjct: 61 SVCQQLRSQGLQEPIVLLTAKDSSSDQIIGLDAGADDYIIKPVNLETLMARIRALLRRKN 120 Query: 120 AL-NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 A +S +E L+++ + V+ +N I LT KE+ LL L I R VI +W Sbjct: 121 ASLSSVIEWGNLQLNLSNCEVNCENEPIHLTAKEYALLELFLVNPKRIFNRRVILERLWD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 I TV I+ LR K+ + I T+ G+GY + Sbjct: 181 IGESPGEETVSTHIKCLRQKLKNAGVSDPIETVYGLGYRLRKADE 225 Score = 72.4 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 3/78 (3%) Query: 26 VIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTA---KQTPVICLTARDS 82 + + + L++LD+ +P +G ++ Q +R P++ L+ Sbjct: 543 EVITCHNPNQFWEMLTTYHPNLLVLDLEMPQFNGLELCQVVRQDPTWNDLPILFLSIYTD 602 Query: 83 VDDRVRGLDSGANDYLVK 100 + + +GA+DY+ K Sbjct: 603 EEMIQQMFAAGADDYISK 620 Score = 59.0 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 3/102 (2%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLP--GMDGW 60 IL+I+D+ E V ++ +D + L+ A+IILD+ DG+ Sbjct: 394 ILMIDDDLALAERVRIEAQTWNLNLEIATDLTVARQIILQKTPAIIILDLNFDSASEDGF 453 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKP 101 +L+ L ++ P+I T R+S++DR++ GA +L KP Sbjct: 454 TLLEELNQSRPNLPIIIFTGRESLNDRIKVARLGAKAFLHKP 495 >UniRef50_A4CE30 Probable two-component response regulator transcription regulator protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CE30_9GAMM Length = 227 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 94/223 (42%), Positives = 132/223 (59%), Gaps = 5/223 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED+ R ++ +GL GY I DG++GL LA + D+ LI+LDIMLP ++G Sbjct: 1 MRILLVEDDDRVASFLERGLRAEGYFIVRACDGKEGLELAQEGDFQLILLDIMLPSLNGL 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++ Q LR P+I LTA D D ++GL GA+DY+ KPF++ ELLAR+ A R+ Sbjct: 61 EVCQALRIKKNLVPIIMLTAMDESQDIIKGLRLGADDYVTKPFAYDELLARIEAVTRRTP 120 Query: 120 AL---NSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + LE L D S+ VS DN I+LT KE +L LL + G+ + R I S + Sbjct: 121 NEIKNTNILEFGPLCFDRSSYIVSLDNEEISLTVKEMAILELLMTNTGKYLSRERILSNV 180 Query: 177 WGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSF 218 WG+ D TN VDV I +LR K+ + E +I T RG+GY Sbjct: 181 WGMEMDPMTNVVDVYIGKLRKKLTIESKGESMIETKRGIGYRL 223 >UniRef50_A4SZ97 Two component transcriptional regulator, winged helix family n=3 Tax=cellular organisms RepID=A4SZ97_POLSQ Length = 237 Score = 303 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 80/227 (35%), Positives = 120/227 (52%), Gaps = 10/227 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +IL++ED E + L+ AGY ++ + +IILD MLPG G Q Sbjct: 4 RILIVEDEPSIAELIAINLTHAGYKVEKAMQTDIASAMMKDQLPNMIILDWMLPGKSGVQ 63 Query: 62 ILQTLRTAKQT---PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 + LR+ ++T P++ LTA+ D+V GLDSGA+DY+ KPFS EL+ARVRA LR+ Sbjct: 64 FAKELRSNERTKALPILMLTAKSEESDKVLGLDSGADDYVTKPFSPKELVARVRAMLRRQ 123 Query: 119 HALNST--LEISGLRMDSVSHSVSR-----DNISITLTRKEFQLLWLLASRAGEIIPRTV 171 + T L + L++D SH V ++ +I L EF+LL + + R Sbjct: 124 MPIEDTGPLTVGPLKLDPSSHRVLATWPNAESKAIALGPTEFRLLQFFMANPERVHSRAS 183 Query: 172 IASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 + ++WG + TVDV I+RLRA + ++ I T+RG GY Sbjct: 184 LLDKVWGSEVYIEERTVDVHIKRLRAALVPFDCDRYIETVRGSGYRI 230 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 83/227 (36%), Positives = 129/227 (56%), Gaps = 6/227 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 +ILL ED+ +T L GY +++ DG L A+ Y LI+LD+MLP G+ Sbjct: 4 RILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSGFD 63 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + + LR ++ P++ LTAR V D+V GL SGA+DYL KPF ELLAR+ A LR+ Sbjct: 64 VCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRAPV 123 Query: 121 LNS----TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 S T ++ G+ +D V+R +TL+ +E++LL L GE + R + +++ Sbjct: 124 RRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLTQV 183 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFVAVK 222 WG + +DT TVDV + LR K+++ P + + T+RG+GY + Sbjct: 184 WGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKLSDEE 230 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 74/228 (32%), Positives = 122/228 (53%), Gaps = 7/228 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL+ ED + ++ L AGY + +GR+ L + + +++LDIM+P +DG+ Sbjct: 3 KILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDGFA 62 Query: 62 ILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ--- 117 + + R+ + +I LTAR +D+V GL GA+DY+ KPFS +ELLAR+++ LR+ Sbjct: 63 VCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRVET 122 Query: 118 --HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 L R+D + V + + + +T E+ LL +++ R + Sbjct: 123 LRRRKQPRELVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDELLDA 182 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDD-PFPEKLIATIRGMGYSFVAVK 222 +WG N+ D TVDV IRRLR K+++ P + I T+ G GY + K Sbjct: 183 VWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKWRNEK 230 >UniRef50_C6LFE5 DNA-binding response regulator CsrR n=2 Tax=Firmicutes RepID=C6LFE5_9FIRM Length = 247 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 93/231 (40%), Positives = 136/231 (58%), Gaps = 11/231 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 IL++ED ++ +V L GY + +GR+ L +AL D+ALI+LDIMLPG++G + Sbjct: 10 HILVVEDEEKLARFVELELVHEGYTVSKAVNGREALEIALSGDFALILLDIMLPGLNGLE 69 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQL------ 115 +L+ L+ K TPVI LTARD+V D+V GLD+GA DY+ KPF+ ELLAR+R L Sbjct: 70 VLRRLQQEKPTPVILLTARDAVMDKVAGLDAGAVDYITKPFAIEELLARIRVALKLHGDT 129 Query: 116 RQHHALNS-----TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRT 170 R+ L++ H V+ D I LT +EFQ+L L ++ R Sbjct: 130 RRSARRPEEEETGVYRWGRLQLSEKRHQVTYDGTEIILTNREFQMLKTLLENQDIVLTRE 189 Query: 171 VIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 V+ + + G ++ +TN VDV IR LRAK+D+ F K+I T+RG+GY + Sbjct: 190 VLLNRVCGYDYVGETNVVDVYIRFLRAKIDEAFQIKMIQTVRGVGYVIKSE 240 >UniRef50_UPI00017468BB two component transcriptional regulator, winged helix family protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI00017468BB Length = 227 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 86/220 (39%), Positives = 132/220 (60%), Gaps = 5/220 (2%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++L++ED+ + + L E Y +DA DG +G AL+++Y +I+LD+MLPG+ GW Sbjct: 12 MRVLVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEYDVIVLDVMLPGLSGW 71 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + LQ LR K +PV+ LTARD+V DRV+GL+ GA+DYL KPF ELLAR+RA +R+ Sbjct: 72 EFLQKLRPTKTSPVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRAAG 131 Query: 121 LN-STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 L I L +D+ + V + +T +E+ L+ LA GE++ RT + ++ Sbjct: 132 QPQPVLTIRDLSIDTAARKVLWKGEEVPVTAREYTLIEYLALHQGEVVSRTTLYEHLFDE 191 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFV 219 + + +N +DV + LR K+ +LI T RG GYS Sbjct: 192 DDSTLSNLLDVHVSNLRKKL----APELITTRRGHGYSIE 227 >UniRef50_B4WP26 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WP26_9SYNE Length = 676 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 78/226 (34%), Positives = 123/226 (54%), Gaps = 4/226 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL+ED++ + + + L++ Y++D G G L +Y LIILD++LP +DG Sbjct: 1 MRILLVEDDESVAKILHKVLTDEHYIVDVAYTGHIGWQLVSSFNYDLIILDVLLPELDGI 60 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + Q LR + T PV+ +TA D +++ GL++GA+DY+ KPF ELLARVRA LR+ Sbjct: 61 KFCQQLRAQEYTLPVLFVTALDDSSEKIAGLNAGADDYITKPFELEELLARVRALLRRGK 120 Query: 120 ALN--STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 +TLE GLR++ S ++ N ++LT KE +L L + R I +W Sbjct: 121 TSVVLTTLEWEGLRLEVNSRELTYRNNKLSLTPKEHAMLELFLRNPAQAFSREAIIDNLW 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSFVAVK 222 + TV ++ LR K+ LI T+ G+GY ++ Sbjct: 181 SYSDAPGEETVTSHMKGLRRKLRTVGAPADLIETVYGVGYRLKPIE 226 Score = 79.4 bits (196), Expect = 9e-14, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 3/121 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KIL ++D+ + + + L+ Y I + + ++ L++LDI +P G + Sbjct: 540 KILAVDDDSQLLQTLKTRLALENYQIVTLDKPLEFWKTLQDENPDLLLLDISMPQFTGIE 599 Query: 62 ILQTLRTA---KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 + QT+R + + P++ TA + +G ++ + K S ++LLA + Q+++ Sbjct: 600 LCQTVRRSPAWRHLPIVFFTAHAEPHLQQAAFKAGGDNLIEKSLSDAQLLAHLEHQMKRS 659 Query: 119 H 119 + Sbjct: 660 Y 660 >UniRef50_C7I0A5 Two component transcriptional regulator PhoB, winged helix family n=1 Tax=Thiomonas intermedia K12 RepID=C7I0A5_THIIN Length = 244 Score = 303 bits (777), Expect = 3e-81, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 116/232 (50%), Gaps = 10/232 (4%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 IL++ED E + L AG+ + L + ++++D MLPGM G Sbjct: 6 NILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEALRVIRDVLPDVLLIDWMLPGMSGVA 65 Query: 62 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 + + LR K P+I LTAR D+V+GLD+GA+DY+ KPFS ELLAR+RA LR+ Sbjct: 66 LARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLRRR 125 Query: 119 HAL--NSTLEISGLRMDSVSHSVSRDN-----ISITLTRKEFQLLWLLASRAGEIIPRTV 171 ++I GL +D S + I L EF+LL L + + R Sbjct: 126 APQLTAEQVQIGGLSVDPSSRRALFKKPGSEPLEIRLGPTEFKLLHYLMAHPERVHSRGA 185 Query: 172 IASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVKK 223 + ++WG + + TVDV I+RLR + +++ T+RG GY F A + Sbjct: 186 LLDKVWGDHVFIEERTVDVHIKRLREALSPVQCAEMVETVRGAGYRFTAQAR 237 >UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z8Q7_STRSW Length = 251 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 117/223 (52%), Gaps = 8/223 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+++D + + +T L GY + A + GR L + D LI+LD+ LP + G++ Sbjct: 28 RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLGGFE 87 Query: 62 ILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 + +TLR PV+ LT VDDRVRGLD G +D++ KPF E+ ARVRA LR+ Sbjct: 88 VCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRRSGG 147 Query: 121 -----LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 + L +++D+ +H V + + LT EF LL L G ++ R I Sbjct: 148 GRPAPDRNRLRAGAIQLDADAHQVWAADRPVDLTTTEFALLRYLMENPGRVLSRGQIQER 207 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 +W + + VD I LR K+ +P LI T+RG+GY Sbjct: 208 VWNHRDEG-SGVVDTYIYYLRRKLGEPGQ-SLIRTVRGVGYQL 248 >UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2P7_ABIDE Length = 257 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 79/231 (34%), Positives = 122/231 (52%), Gaps = 13/231 (5%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLAL-KDDYALIILDIMLPGMDGW 60 KIL+++D++ + V L GY + +D GL + ++D +L ILDIM+PGMDG Sbjct: 26 KILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMPGMDGL 85 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 +++ +R PVI L+A+ + D++ GL +GA+DY+ KPF+ EL ARV+A LR+ Sbjct: 86 SMVKKIRETSHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANLRRFTE 145 Query: 121 LN-----------STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPR 169 N +E L ++ + V + LT E+ +L LLAS G + Sbjct: 146 FNSGQKAGVDSGDEIIEAGPLYINKSTREVRTYDKEAKLTPIEYDILCLLASNPGRVFST 205 Query: 170 TVIASEIWGINFDSDTNTVDVAIRRLRAKVD-DPFPEKLIATIRGMGYSFV 219 I + +W NTV V IRRLR K++ D K+I T+ G+GY Sbjct: 206 DDIFTRVWNEKAFEGNNTVMVHIRRLREKIEMDARNAKIIKTVWGVGYKIE 256 >UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clostridium RepID=A0PXH1_CLONN Length = 232 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 127/226 (56%), Gaps = 9/226 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L+ +D + E ++ L + G+ I + +G + L + ++ + I+DIM+P +DG+ Sbjct: 3 RVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDGYH 62 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA- 120 +++ +R PVI L+A+ D++ GLD GA+DY+ KPF+ E+LARV+AQLR+++ Sbjct: 63 LVRKIRENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYNKS 122 Query: 121 -------LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 LE LR++ + ++ ++NI + LT E+++L+ L G++ + I Sbjct: 123 MSEKEKCEKQYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKVFTKKQIF 182 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVDDPF-PEKLIATIRGMGYSF 218 +W F D N + V I LR K++D I TIRG+GY Sbjct: 183 EYVWEEPFYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYKL 228 >UniRef50_B7CCX3 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCX3_9FIRM Length = 228 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 79/224 (35%), Positives = 128/224 (57%), Gaps = 4/224 (1%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 ++L++ED++ ++ + L+ Y + +G+D + L ILD+MLPGM+G+ Sbjct: 3 RVLIVEDDENIRQLLKLTLASFNYELVDFENGKDAYDYLQDNKVDLAILDLMLPGMNGYD 62 Query: 62 ILQTLRTA---KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 IL+ +R+ K PVI L+A+D D++ GLD GA+DYL KPFS EL AR+R+ LR+ Sbjct: 63 ILKFIRSKASLKDLPVIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLLRRS 122 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 ++I GL +D V+ + LT KEF+LL LA G + R + ++IWG Sbjct: 123 KKDERLIQIHGLCIDLDKRIVTIREEPVELTYKEFELLKYLAKNEGRAVSREELINQIWG 182 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 +F ++ T+DV I LR K+ + + I ++R +GY V+ Sbjct: 183 YDFIGESRTLDVHINSLRKKLGNEYAH-WIQSVRQVGYRLVSGD 225 >UniRef50_A7HL55 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A7HL55_FERNB Length = 229 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 73/223 (32%), Positives = 126/223 (56%), Gaps = 6/223 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K++++ED+++ + + L GY + + G D + ++ L+ILDIMLP MDG++ Sbjct: 6 KLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPDMDGYE 65 Query: 62 ILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH- 119 + Q LR K ++ LTA D++ G ++GA+DYL KPF ELLAR++A LR+ + Sbjct: 66 VAQNLRKLKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRRKNI 125 Query: 120 ALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI 179 +++ ++ L + +V + ++ L++ EF LL LA ++ + I +WGI Sbjct: 126 SISQPIKFGSLEIYENQRTVIYNGKNVDLSKTEFDLLLYLAKNKDRVVSKEEILDAVWGI 185 Query: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 ++ NTV+V + +R K+ +LI TIRG+GY V K Sbjct: 186 DYYGSDNTVEVYVNYIRKKL----SPELIKTIRGVGYKLVGEK 224 >UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostridiales RepID=Q189I8_CLOD6 Length = 229 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 124/229 (54%), Gaps = 8/229 (3%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M ILL+ED++ +E V L Y + DG + + + +I+LD+MLP G+ Sbjct: 1 MDILLVEDDKNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKSSGF 60 Query: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH-- 118 ++L+ +R+ PVI TA+DS D++ GL+ GA+DY+ KPFS ELLAR++A +R+ Sbjct: 61 EVLKYIRSVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRATV 120 Query: 119 -----HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIA 173 ++ + ++ L ++ + VS+ I++ LT EF+++ LLA+ G + + Sbjct: 121 YSSSRNSQDMVIQYKDLIINISKYVVSKSGIALNLTHTEFEIVKLLATNQGRAFSKEQLY 180 Query: 174 SEIWGINFDSDTNTVDVAIRRLRAKVDDP-FPEKLIATIRGMGYSFVAV 221 + IW + + N ++ I RLR K+ D I T+ G+GY Sbjct: 181 NAIWKEPYYGNENVLNTHINRLRNKLSDGMEKNNYIKTLWGIGYKMEEE 229 >UniRef50_B4WG55 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WG55_9SYNE Length = 636 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 76/223 (34%), Positives = 118/223 (52%), Gaps = 3/223 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++LL++D+ +T L+ Y++D V+DG G A DY L++LD MLP + G Sbjct: 1 MRVLLVDDDNALASLLTSQLAAHNYIVDHVADGETGWAYASTFDYDLVVLDWMLPQLSGV 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 + Q LR P++ LT ++ +++ GL++GA+DY+VKPF ELLAR+R LR+ Sbjct: 61 HLCQRLRRQGCGVPILLLTVKNEQRNKIEGLEAGADDYVVKPFDMDELLARIRVLLRRTP 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 H L L++D +S V +TLT KE+ LL L ++ TV+ ++W Sbjct: 121 HETEPVLIWGNLQLDPISTQVHYSGQLVTLTAKEYSLLELFLRSPHQVYSATVLLGKLWS 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPF-PEKLIATIRGMGYSFVA 220 TV +RRLR K+ LI T+ G+GY + Sbjct: 181 SQEFPSEATVRSHLRRLRQKLSQAGAAPDLIETVHGLGYRLKS 223 Score = 86.7 bits (215), Expect = 5e-16, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 62/126 (49%), Gaps = 11/126 (8%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KI++++D+ + V Q L + I +++ + L + L++ D+ +P ++G++ Sbjct: 510 KIMIVDDDAHYLKQVVQLLHPWNFEITPLTNPQRFWTLFNQVLPDLVVFDVEMPQINGFE 569 Query: 62 ILQTLR---TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKP-----FSFSELLARVR- 112 + + LR + P++ L+ + + GA+DY+ KP F+ LL R+ Sbjct: 570 LARVLRSHTKWQHLPIVFLSVHGDAAKQEQAFAIGADDYITKPVHGKAFATR-LLNRLNQ 628 Query: 113 -AQLRQ 117 A +R+ Sbjct: 629 TADIRR 634 >UniRef50_A5VEY8 Two component transcriptional regulator, winged helix family n=7 Tax=Proteobacteria RepID=A5VEY8_SPHWW Length = 225 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 94/223 (42%), Positives = 139/223 (62%), Gaps = 3/223 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M +LLIED+ R + V +GL EAG++++ +DGR+GL A + + +I+LD MLP +DG Sbjct: 1 MHVLLIEDDPRVADHVGKGLREAGHIVETAADGREGLLRAAAESFDVIVLDRMLPQVDGL 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 +ILQT+R TPV+ L+A VD+R+RGL +G +DYL KPF+ SEL+ARV A R+ Sbjct: 61 KILQTIRATGDATPVLILSALGDVDERIRGLRAGGDDYLPKPFALSELVARVEALGRRGP 120 Query: 120 ALNS--TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 A+ L L +D + +V+R I LT++EF++L L AG ++ R+++ +W Sbjct: 121 AIAEATELRSGDLAIDLLGRTVTRAGRRIDLTQREFRILEYLVRSAGRVVTRSMLLEHVW 180 Query: 178 GINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 NFD TN +D + RLR K+D F LI T+RG GY Sbjct: 181 DYNFDPQTNIIDQHVSRLRQKLDRGFDTPLIETVRGTGYVVRP 223 >UniRef50_A5UWJ8 Two component transcriptional regulator, winged helix family n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UWJ8_ROSS1 Length = 231 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 88/221 (39%), Positives = 128/221 (57%), Gaps = 3/221 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M++LLIED + +GL + GY +D +DG G LA ++Y LIILD+ LP +DG Sbjct: 1 MRLLLIEDEDDLAHALVRGLRQQGYAVDWAADGEQGCELASINEYDLIILDLNLPALDGL 60 Query: 61 QILQTLRTAK-QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH- 118 + + LR ++ LTARD ++RV GLD+GA+DYL+KPF F ELLAR+RA LR+ Sbjct: 61 DVCRYLRANYPHLLILILTARDQPEERVIGLDTGADDYLIKPFHFGELLARIRALLRRDL 120 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L+ L++D + +V +N + LTRKEF +L L GE+I + ++ +W Sbjct: 121 RVRQPLLQYRDLKLDPATQTVWLNNQRLNLTRKEFAILSYLMRHQGEVITQEMLLEHVWD 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPE-KLIATIRGMGYSF 218 + TNTV V I LR K+ D + I T+ G+GY Sbjct: 181 GTVNPFTNTVRVHINALRRKLRDTIAPYRYIETVVGVGYRL 221 >UniRef50_D2PLZ1 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=D2PLZ1_9ACTO Length = 236 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 84/224 (37%), Positives = 123/224 (54%), Gaps = 2/224 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+IL++ED +R + GL + G+ ++ DG GL+ + DY I+LD+MLPG+ G Sbjct: 1 MRILVVEDERRLARAIGHGLEDHGFTVELAHDGETGLWKGREQDYDAIVLDLMLPGLSGD 60 Query: 61 QILQTLRTAKQ-TPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++ + LR A TP++ LTAR + GL+ GA+DYL KPFS+ L+AR+ A LR+ Sbjct: 61 EVCRQLRAAGCWTPILILTARVGAEAEAGGLNLGADDYLRKPFSYQVLIARLNALLRRTA 120 Query: 120 ALNST-LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 L + L +D +V R I LTR+EF +L L AG + I +WG Sbjct: 121 PARPVNLVVGDLVLDPARRTVRRGTTPIELTRREFSVLEYLMRNAGSTRSKAEILDHVWG 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 +FD + N V+V + LR K+D PF I T+RG GY Sbjct: 181 ADFDREPNVVEVYVGYLRRKIDQPFGTGSIRTVRGHGYLMGDED 224 >UniRef50_B4WSX3 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WSX3_9SYNE Length = 640 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 72/225 (32%), Positives = 118/225 (52%), Gaps = 3/225 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 M+ILL++D+ + + + L + YV+D +DG Y IILD+ LP ++G Sbjct: 27 MRILLVDDDAALMDILAEQLIKQRYVVDIATDGESAEECVNLFSYDFIILDMGLPDIEGI 86 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ-H 118 + Q LR K T P++ LTA D+ +V+ L++GA+DY+VKPF F EL AR+RA R+ + Sbjct: 87 SLCQRLRQQKITSPILMLTAEDNSKAKVKALNAGADDYVVKPFDFEELFARIRALRRRDN 146 Query: 119 HALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + L + L+ LR+D + V + + +T KE+ +L L ++ I +W Sbjct: 147 NTLAAVLQQGDLRVDPNTFEVFYQDRPLRVTPKEYTMLELFLRHPNQVFSIDAIIDNLWS 206 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEK-LIATIRGMGYSFVAVK 222 + V ++ LR K+ K I T+ G+GY A+K Sbjct: 207 FEDPPSEDAVRTHVKGLRQKLKAGGAPKDFIQTVYGLGYRLKAIK 251 Score = 87.1 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 59/127 (46%), Gaps = 3/127 (2%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 K++ I+D+ + + LS G+ A+ + L+++D+ +P +G + Sbjct: 513 KVVAIDDDPQVLALLQTILSPWGFQTTALENADRLFDTLESVRPDLLLIDVEMPETNGLE 572 Query: 62 ILQTLRTAK---QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 I + LR + Q P++ L+ D + + + GA+D++ K +EL R+ +L++ Sbjct: 573 ICRVLRADERWQQLPILFLSVHDEDHTQHQAFNVGADDFISKTTMATELPTRLINRLKRT 632 Query: 119 HALNSTL 125 L Sbjct: 633 GRAVPAL 639 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 81/236 (34%), Positives = 124/236 (52%), Gaps = 20/236 (8%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+ +D+Q +E + L GY + DG + L L++LDIM+P +DG+Q+ Sbjct: 11 ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDGYQV 70 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 L+ +R PVI ++A+ D++ GLD GA+DYL KPF+ E LARVR+ LR+ + + Sbjct: 71 LRRVRETSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRAYGMP 130 Query: 123 S-----------------TLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGE 165 + L + L +D + + R + + LT EF++L L S G Sbjct: 131 AGASPDDPSAKAPLRVARVLSVRDLTLDLDACVLHRGDEPLDLTPVEFRMLSLFMSHPGR 190 Query: 166 IIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKV-DDPFPEKLIATIRGMGYSFVA 220 + + I E WG + + N V V I +LRAK+ DDP IAT+RG+GY A Sbjct: 191 VFTKQQIFEEGWGEEYVASGNNVMVGISKLRAKLSDDPGA--YIATVRGLGYRMEA 244 >UniRef50_C6PQ36 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PQ36_9CLOT Length = 233 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 73/222 (32%), Positives = 125/222 (56%), Gaps = 8/222 (3%) Query: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61 KILL++D + + VT L + GY ++ DGR+ L +++LD+MLP ++G+ Sbjct: 4 KILLVDDEKSILDVVTYALKKEGYFVERAYDGREALDKVEVYKPHIVVLDLMLPVINGYD 63 Query: 62 ILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ---- 117 + + L K +I LTA++ + D++ GL+ GA+DY+ KPF EL+AR+++ +R+ Sbjct: 64 VCKRL-EGKNIGIIMLTAKEDIVDKILGLELGADDYMTKPFDIRELIARIKSLIRRLDKT 122 Query: 118 --HHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASE 175 + + I L ++ +VS N + T EF LL+LL S +G + R I + Sbjct: 123 IDEEKDSGVINIGDLNINKKKRTVSIKNSLLEFTPMEFDLLYLLLSNSGTVYSREQILNI 182 Query: 176 IWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYS 217 IW +++ T TVD I+R+R K+ + + LI T+ G+GY Sbjct: 183 IWNMDYAGGTRTVDTHIQRIRKKLGNNYQ-DLIQTVYGIGYK 223 >UniRef50_B4VMC7 Response regulator receiver domain protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VMC7_9CYAN Length = 362 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 119/222 (53%), Gaps = 2/222 (0%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKIL++EDN + + GL++ YV+D DG GL AL +Y LI+LDI LP +D Sbjct: 1 MKILVVEDNPTLAQTIVAGLTQQNYVVDLAQDGETGLDNALAYNYDLILLDINLPHLDSI 60 Query: 61 QILQTLRTAKQT-PVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 + + LR A T P++ L+A + D V GLD+GA+DY++KP L ARVRA LR++ Sbjct: 61 SLCRRLRQAGNTSPIVLLSASATTQDMVAGLDAGADDYIIKPCPVEGLAARVRALLRRNR 120 Query: 120 ALN-STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWG 178 + TL+ L +D + V+ + L+ KE+ LL+LL S I + I ++W Sbjct: 121 DASTPTLQWGNLEIDPSTCEVTCLGQPLRLSPKEYGLLYLLMSSPTRIFSQDYIIEKLWT 180 Query: 179 INFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVA 220 + TV ++ LR K+ +I T+ G GY Sbjct: 181 FGDPPNRETVKAHVKGLRRKLKKAGVGDIIETVYGFGYRLKD 222 >UniRef50_A8VZA3 Response regulator receiver protein n=2 Tax=Bacillus RepID=A8VZA3_9BACI Length = 233 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 74/226 (32%), Positives = 128/226 (56%), Gaps = 8/226 (3%) Query: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 IL+ +D Q ++++ + + GY ++G++ L + + L++LD+M+P MDG + Sbjct: 8 ILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVMMPEMDGMEA 67 Query: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 L+ LRT+++ PVI +TA+ +DRV GL SGA+DY+VKPFS ELLAR+ AQ+R+++ N Sbjct: 68 LRELRTSRRIPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQIRRNYGYN 127 Query: 123 -----STLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIW 177 L+ ++++ S V D +++LTRKEF LL ++ R + +W Sbjct: 128 DDESKEELQYKSIKVNLNSRKVFIDGEAVSLTRKEFDLLVHFMKHPEQVFNREQLLDHVW 187 Query: 178 GINF-DSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAVK 222 G+N+ TVD ++ +R K+ T+ G+GY + Sbjct: 188 GVNYTTGGHRTVDTHMKTMRFKMGSGG--DYFRTVYGVGYVLEDGE 231 >UniRef50_C9NWS1 DNA-binding heavy metal response regulator n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NWS1_9VIBR Length = 226 Score = 302 bits (774), Expect = 7e-81, Method: Composition-based stats. Identities = 98/225 (43%), Positives = 140/225 (62%), Gaps = 4/225 (1%) Query: 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGW 60 MKILLIED+ ++ G + G I ++G DGL+ A+ + Y +I+LDIMLP DG+ Sbjct: 1 MKILLIEDDTHIARFLINGFQQEGCTITHATNGVDGLHEAISESYDVIVLDIMLPQKDGF 60 Query: 61 QILQTLR-TAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119 ++L LR TPV+ L+A+ SVD+RV+GL SGA+DYLVKPF+F ELLAR ++ R+ Sbjct: 61 EVLAQLRGEGHATPVLILSAKHSVDERVKGLQSGADDYLVKPFAFPELLARCQSLARRGQ 120 Query: 120 ALNST---LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEI 176 + L S L +D + HS+ R+ SI L ++EF L+ L+ +I +T I ++ Sbjct: 121 QNPAQSYQLSYSELSLDLLKHSLERNGASIQLNQREFMLIKLMLENPETVISKTAILEQV 180 Query: 177 WGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSFVAV 221 WG FD TN VDV + RLR+KVD F LI T+RG+GY + Sbjct: 181 WGHQFDPQTNVVDVLVCRLRSKVDKGFDTPLIHTLRGVGYVLKSQ 225 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.222 0.876 Lambda K H 0.267 0.0682 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,404,124,698 Number of Sequences: 3077464 Number of extensions: 182698416 Number of successful extensions: 513612 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 34279 Number of HSP's successfully gapped in prelim test: 16431 Number of HSP's that attempted gapping in prelim test: 401869 Number of HSP's gapped (non-prelim): 59765 length of query: 223 length of database: 1,040,396,356 effective HSP length: 124 effective length of query: 99 effective length of database: 658,790,820 effective search space: 65220291180 effective search space used: 65220291180 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.7 bits) S2: 92 (39.3 bits)