Phyre 2 Results for P36678

Email | l.a.kelley@imperial.ac.uk
Description | P36678
Date | Thu Jan 5 11:53:44 GMT 2012
Unique Job ID | 156f5206a625bbe3

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1uv7A_ |
|  | 99.8 | 11 | PDB header:transport Chain: A: PDB Molecule:general secretion pathway protein m; PDBTitle: periplasmic domain of epsm from vibrio cholerae
2 | d1uv7a_ |
|  | 99.8 | 11 | Fold:RRF/tRNA synthetase additional domain-like Superfamily:General secretion pathway protein M, EpsM Family:General secretion pathway protein M, EpsM
3 | c2rjzA_ |
|  | 97.7 | 9 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:pilo protein; PDBTitle: crystal structure of the type 4 fimbrial biogenesis protein pilo from2 pseudomonas aeruginosa
4 | c2rddB_ |
|  | 57.7 | 17 | PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix.
5 | c2y9kG_ |
|  | 47.2 | 9 | PDB header:protein transport Chain: G: PDB Molecule:protein invg; PDBTitle: three-dimensional model of salmonella's needle complex at2 subnanometer resolution
6 | d1bjna_ |
|  | 29.5 | 9 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
7 | c3gr5A_ |
|  | 28.1 | 10 | PDB header:membrane protein Chain: A: PDB Molecule:escc; PDBTitle: periplasmic domain of the outer membrane secretin escc from2 enteropathogenic e.coli (epec)
8 | d1ppjc2 |
|  | 26.1 | 9 | Fold:Heme-binding four-helical bundle Superfamily:Transmembrane di-heme cytochromes Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
9 | d1tp6a_ |
|  | 24.9 | 22 | Fold:Cystatin-like Superfamily:NTF2-like Family:PA1314-like
10 | d1dnla_ |
|  | 24.9 | 15 | Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like
11 | c3hd7A_ |
|  | 22.9 | 22 | PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1
12 | d1yioa1 |
|  | 21.4 | 10 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
13 | d2c0ra1 |
|  | 20.2 | 7 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
14 | d1x4pa1 |
|  | 18.6 | 18 | Fold:Surp module (SWAP domain) Superfamily:Surp module (SWAP domain) Family:Surp module (SWAP domain)
15 | d1nrga_ |
|  | 18.1 | 11 | Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like
16 | c1nrgA_ |
|  | 18.1 | 11 | PDB header:oxidoreductase Chain: A: PDB Molecule:pyridoxine 5'-phosphate oxidase; PDBTitle: structure and properties of recombinant human pyridoxine-5'-phosphate2 oxidase
17 | d1t9ma_ |
|  | 17.1 | 17 | Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like
18 | c2kncA_ |
|  | 16.5 | 25 | PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
19 | d1hywa_ |
|  | 14.4 | 5 | Fold:gpW/XkdW-like Superfamily:Head-to-tail joining protein W, gpW Family:Head-to-tail joining protein W, gpW
20 | d1bccc3 |
|  | 12.8 | 11 | Fold:Heme-binding four-helical bundle Superfamily:Transmembrane di-heme cytochromes Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
21 | d1v54d_ |
| not modelled | 12.5 | 27 | Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit IV Family:Mitochondrial cytochrome c oxidase subunit IV
22 | c3mn7S_ |
| not modelled | 12.1 | 20 | PDB header:contractile protein/protein binding Chain: S: PDB Molecule:spire ddd; PDBTitle: structures of actin-bound wh2 domains of spire and the implication for2 filament nucleation
23 | c2rnjA_ |
| not modelled | 11.8 | 19 | PDB header:transcription Chain: A: PDB Molecule:response regulator protein vrar; PDBTitle: nmr structure of the s. aureus vrar dna binding domain
24 | c3mn5S_ |
| not modelled | 11.8 | 20 | PDB header:contractile protein/protein binding Chain: S: PDB Molecule:protein spire; PDBTitle: structures of actin-bound wh2 domains of spire and the implication for2 filament nucleation
25 | c3qm2A_ |
| not modelled | 11.4 | 9 | PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: 2.25 angstrom crystal structure of phosphoserine aminotransferase2 (serc) from salmonella enterica subsp. enterica serovar typhimurium
26 | c2d89A_ |
| not modelled | 10.7 | 19 | PDB header:structural protein, protein binding Chain: A: PDB Molecule:ehbp1 protein; PDBTitle: solution structure of the ch domain from human eh domain2 binding protein 1
27 | c2y69Q_ |
| not modelled | 10.6 | 27 | PDB header:electron transport Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen
28 | c2w7vB_ |
| not modelled | 10.5 | 11 | PDB header:transport protein Chain: B: PDB Molecule:general secretion pathway protein l; PDBTitle: periplasmic domain of epsl from vibrio parahaemolyticus
29 | d2csua2 |
| not modelled | 10.4 | 7 | Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains
30 | c2d88A_ |
| not modelled | 10.3 | 24 | PDB header:signaling protein, protein binding Chain: A: PDB Molecule:protein mical-3; PDBTitle: solution structure of the ch domain from human mical-32 protein
31 | d1ty9a_ |
| not modelled | 10.0 | 14 | Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like
32 | d2p8ia1 |
| not modelled | 9.4 | 14 | Fold:Ferredoxin-like Superfamily:DOPA-like Family:DOPA dioxygenase-like
33 | c2yv2A_ |
| not modelled | 9.2 | 9 | PDB header:ligase Chain: A: PDB Molecule:succinyl-coa synthetase alpha chain; PDBTitle: crystal structure of succinyl-coa synthetase alpha chain from2 aeropyrum pernix k1
34 | c3adyA_ |
| not modelled | 8.9 | 16 | PDB header:proton transport Chain: A: PDB Molecule:dotd; PDBTitle: crystal structure of dotd from legionella
35 | d1dwka2 |
| not modelled | 8.8 | 13 | Fold:Cyanase C-terminal domain Superfamily:Cyanase C-terminal domain Family:Cyanase C-terminal domain
36 | c2k1aA_ |
| not modelled | 8.8 | 29 | PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
37 | d2f06a2 |
| not modelled | 8.6 | 15 | Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like
38 | c2iv1J_ |
| not modelled | 8.5 | 13 | PDB header:lyase Chain: J: PDB Molecule:cyanate hydratase; PDBTitle: site directed mutagenesis of key residues involved in the2 catalytic mechanism of cyanase
39 | d1dxxa2 |
| not modelled | 8.4 | 10 | Fold:CH domain-like Superfamily:Calponin-homology domain, CH-domain Family:Calponin-homology domain, CH-domain
40 | d1sh5a2 |
| not modelled | 8.3 | 19 | Fold:CH domain-like Superfamily:Calponin-homology domain, CH-domain Family:Calponin-homology domain, CH-domain
41 | c1wylA_ |
| not modelled | 8.3 | 30 | PDB header:signaling protein Chain: A: PDB Molecule:nedd9 interacting protein with calponin homology PDBTitle: solution structure of the ch domain of human nedd92 interacting protein with calponin homology and lim domains
42 | d2a2ja1 |
| not modelled | 8.2 | 15 | Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like
43 | c2kncB_ |
| not modelled | 7.9 | 14 | PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
44 | c1x3uA_ |
| not modelled | 7.7 | 26 | PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein fixj; PDBTitle: solution structure of the c-terminal transcriptional2 activator domain of fixj from sinorhizobium melilot
45 | c2a2jA_ |
| not modelled | 7.6 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase; PDBTitle: crystal structure of a putative pyridoxine 5'-phosphate oxidase2 (rv2607) from mycobacterium tuberculosis
46 | d1ku3a_ |
| not modelled | 7.6 | 12 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain
47 | c2pebB_ |
| not modelled | 7.4 | 10 | PDB header:oxidoreductase Chain: B: PDB Molecule:putative dioxygenase; PDBTitle: crystal structure of a putative dioxygenase (npun_f1925) from nostoc2 punctiforme pcc 73102 at 1.46 a resolution
48 | d3e9va1 |
| not modelled | 7.4 | 14 | Fold:BTG domain-like Superfamily:BTG domain-like Family:BTG domain-like
49 | c2d87A_ |
| not modelled | 7.2 | 15 | PDB header:structural protein, protein binding Chain: A: PDB Molecule:smoothelin splice isoform l2; PDBTitle: solution structure of the ch domain from human smoothelin2 splice isoform l2
50 | d1wb9a4 |
| not modelled | 7.2 | 13 | Fold:MutS N-terminal domain-like Superfamily:DNA repair protein MutS, domain I Family:DNA repair protein MutS, domain I
51 | c3smtA_ |
| not modelled | 7.2 | 19 | PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd3; PDBTitle: crystal structure of human set domain-containing protein3
52 | d1bkra_ |
| not modelled | 7.2 | 15 | Fold:CH domain-like Superfamily:Calponin-homology domain, CH-domain Family:Calponin-homology domain, CH-domain
53 | d1ewqa4 |
| not modelled | 7.1 | 18 | Fold:MutS N-terminal domain-like Superfamily:DNA repair protein MutS, domain I Family:DNA repair protein MutS, domain I
54 | c3cwbC_ |
| not modelled | 6.8 | 11 | PDB header:oxidoreductase Chain: C: PDB Molecule:cytochrome b; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d
55 | d2z15a1 |
| not modelled | 6.8 | 14 | Fold:BTG domain-like Superfamily:BTG domain-like Family:BTG domain-like
56 | c3hilB_ |
| not modelled | 6.7 | 38 | PDB header:transferase Chain: B: PDB Molecule:ephrin type-a receptor 1; PDBTitle: sam domain of human ephrin type-a receptor 1 (epha1)
57 | d3dhxa1 |
| not modelled | 6.5 | 22 | Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like
58 | d1ygya3 |
| not modelled | 6.5 | 12 | Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
59 | d2af7a1 |
| not modelled | 6.3 | 6 | Fold:AhpD-like Superfamily:AhpD-like Family:CMD-like
60 | c2ogfD_ |
| not modelled | 6.2 | 12 | PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein mj0408; PDBTitle: crystal structure of protein mj0408 from methanococcus jannaschii,2 pfam duf372
61 | d1ulra_ |
| not modelled | 6.2 | 17 | Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like
62 | c3f6oB_ |
| not modelled | 5.9 | 18 | PDB header:transcription regulator Chain: B: PDB Molecule:probable transcriptional regulator, arsr family PDBTitle: crystal structure of arsr family transcriptional regulator,2 rha00566
63 | d2iw0a1 |
| not modelled | 5.9 | 6 | Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase
64 | c2d1uA_ |
| not modelled | 5.8 | 10 | PDB header:metal transport Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca; PDBTitle: solution strcuture of the periplasmic signaling domain of2 feca from escherichia coli
65 | d1ku7a_ |
| not modelled | 5.6 | 12 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain
66 | c3mgjA_ |
| not modelled | 5.6 | 18 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mj1480; PDBTitle: crystal structure of the saccharop_dh_n domain of mj14802 protein from methanococcus jannaschii. northeast structural3 genomics consortium target mjr83a.
67 | c3dmyA_ |
| not modelled | 5.6 | 10 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein fdra; PDBTitle: crystal structure of a predicated acyl-coa synthetase from e.coli
68 | c2e8nA_ |
| not modelled | 5.4 | 33 | PDB header:transferase, signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 2; PDBTitle: solution structure of the c-terminal sam-domain of ephaa2:2 ephrin type-a receptor 2 precursor (ec 2.7.10.1)
69 | d1euca2 |
| not modelled | 5.2 | 11 | Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains
70 | c2yh5A_ |
| not modelled | 5.1 | 25 | PDB header:lipid binding protein Chain: A: PDB Molecule:dapx protein; PDBTitle: structure of the c-terminal domain of bamc
71 | c1zzvA_ |
| not modelled | 5.1 | 10 | PDB header:membrane protein, metal transport Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca; PDBTitle: solution nmr structure of the periplasmic signaling domain2 of the outer membrane iron transporter feca from3 escherichia coli.
72 | d1bhda_ |
| not modelled | 5.0 | 10 | Fold:CH domain-like Superfamily:Calponin-homology domain, CH-domain Family:Calponin-homology domain, CH-domain