Phyre 2 Results for P36678

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Email | l.a.kelley@imperial.ac.uk
Description | P36678
Date | Thu Jan 5 11:53:44 GMT 2012
Unique Job ID | 156f5206a625bbe3

Summary |

Top model
Image coloured by rainbow N → C terminus
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Model (left) based on template c1uv7A_
Top template information
PDB header:transport Chain: A: PDB Molecule:general secretion pathway protein m; PDBTitle: periplasmic domain of epsm from vibrio cholerae
Confidence and coverage
Confidence: | 99.8% | Coverage: | 46%
71 residues ( 46% of your sequence) have been modelled with 99.8% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
102 residues ( 67%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | I | K | S | W | W | A | E | K | S | T | S | E | K | Q | I | V | A | A | L | A | V | L | S | L | G | V | F | C | W | L | G | V | I | K | P | I | D | T | Y | I | A | E | H | Q | S | H | A | Q | K | I | K | K | D | I | K | W | M | Q | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | Q | A | S | T | H | G | L | L | G | H | P | A | L | T | Q | P | I | K | N | I | L | L | E | E | A | K | R | E | N | L | A | I | T | L | E | N | G | P | D | N | T | L | T | I | H | P | V | T | A | P | L | E | N | V | S | R | W | L | T | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  | ? | ? | ? |  | ? |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | .
Sequence |  | A | Q | V | T | Y | G | I | V | I | E | D | L | Q | F | T | L | A | G | N | E | E | I | T | L | R | H | L | S | F | R | E | Q | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c1uv7A_ |

### PDB 1uv7 chain A

Region: 75 - 149
Aligned: 71
Modelled: 75
Confidence: 99.8%
Identity: 11%
PDB header:transport
Chain: A: PDB Molecule:general secretion pathway protein m;
PDBTitle: periplasmic domain of epsm from vibrio cholerae

Phyre2
2 |
| d1uv7a_ |

### PDB 1uv7 chain A

Region: 75 - 149
Aligned: 71
Modelled: 75
Confidence: 99.8%
Identity: 11%
Fold: RRF/tRNA synthetase additional domain-like
Superfamily: General secretion pathway protein M, EpsM
Family: General secretion pathway protein M, EpsM

Phyre2
3 |
| c2rjzA_ |

### PDB 2rjz chain A

Region: 48 - 149
Aligned: 101
Modelled: 102
Confidence: 97.7%
Identity: 9%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:pilo protein;
PDBTitle: crystal structure of the type 4 fimbrial biogenesis protein pilo from2 pseudomonas aeruginosa

Phyre2
4 |
| c2rddB_ |

### PDB 2rdd chain B

Region: 18 - 46
Aligned: 29
Modelled: 29
Confidence: 57.7%
Identity: 17%
PDB header:membrane protein/transport protein
Chain: B: PDB Molecule:upf0092 membrane protein yajc;
PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix.

Phyre2
5 |
| c2y9kG_ |

### PDB 2y9k chain G

Region: 74 - 152
Aligned: 78
Modelled: 79
Confidence: 47.2%
Identity: 9%
PDB header:protein transport
Chain: G: PDB Molecule:protein invg;
PDBTitle: three-dimensional model of salmonella's needle complex at2 subnanometer resolution

Phyre2
6 |
| d1bjna_ |

### PDB 1bjn chain A

Region: 73 - 126
Aligned: 54
Modelled: 54
Confidence: 29.5%
Identity: 9%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2
7 |
| c3gr5A_ |

### PDB 3gr5 chain A

Region: 74 - 151
Aligned: 77
Modelled: 78
Confidence: 28.1%
Identity: 10%
PDB header:membrane protein
Chain: A: PDB Molecule:escc;
PDBTitle: periplasmic domain of the outer membrane secretin escc from2 enteropathogenic e.coli (epec)

Phyre2
8 |
| d1ppjc2 |

### PDB 1ppj chain C domain 2

Region: 1 - 36
Aligned: 35
Modelled: 36
Confidence: 26.1%
Identity: 9%
Fold: Heme-binding four-helical bundle
Superfamily: Transmembrane di-heme cytochromes
Family: Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)

Phyre2
9 |
| d1tp6a_ |

### PDB 1tp6 chain A

Region: 110 - 153
Aligned: 41
Modelled: 44
Confidence: 24.9%
Identity: 22%
Fold: Cystatin-like
Superfamily: NTF2-like
Family: PA1314-like

Phyre2
10 |
| d1dnla_ |

### PDB 1dnl chain A

Region: 106 - 146
Aligned: 41
Modelled: 41
Confidence: 24.9%
Identity: 15%
Fold: Split barrel-like
Superfamily: FMN-binding split barrel
Family: PNP-oxidase like

Phyre2
11 |
| c3hd7A_ |

### PDB 3hd7 chain A

Region: 3 - 34
Aligned: 27
Modelled: 27
Confidence: 22.9%
Identity: 22%
PDB header:exocytosis
Chain: A: PDB Molecule:vesicle-associated membrane protein 2;
PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1

Phyre2
12 |
| d1yioa1 |

### PDB 1yio chain A domain 1

Region: 2 - 21
Aligned: 20
Modelled: 20
Confidence: 21.4%
Identity: 10%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: C-terminal effector domain of the bipartite response regulators
Family: GerE-like (LuxR/UhpA family of transcriptional regulators)

Phyre2
13 |
| d2c0ra1 |

### PDB 2c0r chain A domain 1

Region: 73 - 126
Aligned: 54
Modelled: 54
Confidence: 20.2%
Identity: 7%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: GABA-aminotransferase-like

Phyre2
14 |
| d1x4pa1 |

### PDB 1x4p chain A domain 1

Region: 8 - 18
Aligned: 11
Modelled: 11
Confidence: 18.6%
Identity: 18%
Fold: Surp module (SWAP domain)
Superfamily: Surp module (SWAP domain)
Family: Surp module (SWAP domain)

Phyre2
15 |
| d1nrga_ |

### PDB 1nrg chain A

Region: 110 - 147
Aligned: 38
Modelled: 38
Confidence: 18.1%
Identity: 11%
Fold: Split barrel-like
Superfamily: FMN-binding split barrel
Family: PNP-oxidase like

Phyre2
16 |
| c1nrgA_ |

### PDB 1nrg chain A

Region: 110 - 147
Aligned: 38
Modelled: 38
Confidence: 18.1%
Identity: 11%
PDB header:oxidoreductase
Chain: A: PDB Molecule:pyridoxine 5'-phosphate oxidase;
PDBTitle: structure and properties of recombinant human pyridoxine-5'-phosphate2 oxidase

Phyre2
17 |
| d1t9ma_ |

### PDB 1t9m chain A

Region: 106 - 147
Aligned: 42
Modelled: 42
Confidence: 17.1%
Identity: 17%
Fold: Split barrel-like
Superfamily: FMN-binding split barrel
Family: PNP-oxidase like

Phyre2
18 |
| c2kncA_ |

### PDB 2knc chain A

Region: 15 - 34
Aligned: 20
Modelled: 20
Confidence: 16.5%
Identity: 25%
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex

Phyre2
19 |
| d1hywa_ |

### PDB 1hyw chain A

Region: 89 - 127
Aligned: 37
Modelled: 39
Confidence: 14.4%
Identity: 5%
Fold: gpW/XkdW-like
Superfamily: Head-to-tail joining protein W, gpW
Family: Head-to-tail joining protein W, gpW

Phyre2
20 |
| d1bccc3 |

### PDB 1bcc chain C domain 3

Region: 1 - 36
Aligned: 35
Modelled: 36
Confidence: 12.8%
Identity: 11%
Fold: Heme-binding four-helical bundle
Superfamily: Transmembrane di-heme cytochromes
Family: Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1uv7A_ |
|  | 99.8 | 11 | PDB header:transport Chain: A: PDB Molecule:general secretion pathway protein m; PDBTitle: periplasmic domain of epsm from vibrio cholerae
2 | d1uv7a_ |
|  | 99.8 | 11 | Fold:RRF/tRNA synthetase additional domain-like Superfamily:General secretion pathway protein M, EpsM Family:General secretion pathway protein M, EpsM
3 | c2rjzA_ |
|  | 97.7 | 9 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:pilo protein; PDBTitle: crystal structure of the type 4 fimbrial biogenesis protein pilo from2 pseudomonas aeruginosa
4 | c2rddB_ |
|  | 57.7 | 17 | PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix.
5 | c2y9kG_ |
|  | 47.2 | 9 | PDB header:protein transport Chain: G: PDB Molecule:protein invg; PDBTitle: three-dimensional model of salmonella's needle complex at2 subnanometer resolution
6 | d1bjna_ |
|  | 29.5 | 9 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
7 | c3gr5A_ |
|  | 28.1 | 10 | PDB header:membrane protein Chain: A: PDB Molecule:escc; PDBTitle: periplasmic domain of the outer membrane secretin escc from2 enteropathogenic e.coli (epec)
8 | d1ppjc2 |
|  | 26.1 | 9 | Fold:Heme-binding four-helical bundle Superfamily:Transmembrane di-heme cytochromes Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
9 | d1tp6a_ |
|  | 24.9 | 22 | Fold:Cystatin-like Superfamily:NTF2-like Family:PA1314-like
10 | d1dnla_ |
|  | 24.9 | 15 | Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like
11 | c3hd7A_ |
|  | 22.9 | 22 | PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1
12 | d1yioa1 |
|  | 21.4 | 10 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
13 | d2c0ra1 |
|  | 20.2 | 7 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like
14 | d1x4pa1 |
|  | 18.6 | 18 | Fold:Surp module (SWAP domain) Superfamily:Surp module (SWAP domain) Family:Surp module (SWAP domain)
15 | d1nrga_ |
|  | 18.1 | 11 | Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like
16 | c1nrgA_ |
|  | 18.1 | 11 | PDB header:oxidoreductase Chain: A: PDB Molecule:pyridoxine 5'-phosphate oxidase; PDBTitle: structure and properties of recombinant human pyridoxine-5'-phosphate2 oxidase
17 | d1t9ma_ |
|  | 17.1 | 17 | Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like
18 | c2kncA_ |
|  | 16.5 | 25 | PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
19 | d1hywa_ |
|  | 14.4 | 5 | Fold:gpW/XkdW-like Superfamily:Head-to-tail joining protein W, gpW Family:Head-to-tail joining protein W, gpW
20 | d1bccc3 |
|  | 12.8 | 11 | Fold:Heme-binding four-helical bundle Superfamily:Transmembrane di-heme cytochromes Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
21 | d1v54d_ |
| not modelled | 12.5 | 27 | Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit IV Family:Mitochondrial cytochrome c oxidase subunit IV
22 | c3mn7S_ |
| not modelled | 12.1 | 20 | PDB header:contractile protein/protein binding Chain: S: PDB Molecule:spire ddd; PDBTitle: structures of actin-bound wh2 domains of spire and the implication for2 filament nucleation
23 | c2rnjA_ |
| not modelled | 11.8 | 19 | PDB header:transcription Chain: A: PDB Molecule:response regulator protein vrar; PDBTitle: nmr structure of the s. aureus vrar dna binding domain
24 | c3mn5S_ |
| not modelled | 11.8 | 20 | PDB header:contractile protein/protein binding Chain: S: PDB Molecule:protein spire; PDBTitle: structures of actin-bound wh2 domains of spire and the implication for2 filament nucleation
25 | c3qm2A_ |
| not modelled | 11.4 | 9 | PDB header:transferase Chain: A: PDB Molecule:phosphoserine aminotransferase; PDBTitle: 2.25 angstrom crystal structure of phosphoserine aminotransferase2 (serc) from salmonella enterica subsp. enterica serovar typhimurium
26 | c2d89A_ |
| not modelled | 10.7 | 19 | PDB header:structural protein, protein binding Chain: A: PDB Molecule:ehbp1 protein; PDBTitle: solution structure of the ch domain from human eh domain2 binding protein 1
27 | c2y69Q_ |
| not modelled | 10.6 | 27 | PDB header:electron transport Chain: Q: PDB Molecule:cytochrome c oxidase subunit 4 isoform 1; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen
28 | c2w7vB_ |
| not modelled | 10.5 | 11 | PDB header:transport protein Chain: B: PDB Molecule:general secretion pathway protein l; PDBTitle: periplasmic domain of epsl from vibrio parahaemolyticus
29 | d2csua2 |
| not modelled | 10.4 | 7 | Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains
30 | c2d88A_ |
| not modelled | 10.3 | 24 | PDB header:signaling protein, protein binding Chain: A: PDB Molecule:protein mical-3; PDBTitle: solution structure of the ch domain from human mical-32 protein
31 | d1ty9a_ |
| not modelled | 10.0 | 14 | Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like
32 | d2p8ia1 |
| not modelled | 9.4 | 14 | Fold:Ferredoxin-like Superfamily:DOPA-like Family:DOPA dioxygenase-like
33 | c2yv2A_ |
| not modelled | 9.2 | 9 | PDB header:ligase Chain: A: PDB Molecule:succinyl-coa synthetase alpha chain; PDBTitle: crystal structure of succinyl-coa synthetase alpha chain from2 aeropyrum pernix k1
34 | c3adyA_ |
| not modelled | 8.9 | 16 | PDB header:proton transport Chain: A: PDB Molecule:dotd; PDBTitle: crystal structure of dotd from legionella
35 | d1dwka2 |
| not modelled | 8.8 | 13 | Fold:Cyanase C-terminal domain Superfamily:Cyanase C-terminal domain Family:Cyanase C-terminal domain
36 | c2k1aA_ |
| not modelled | 8.8 | 29 | PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
37 | d2f06a2 |
| not modelled | 8.6 | 15 | Fold:Ferredoxin-like Superfamily:ACT-like Family:BT0572-like
38 | c2iv1J_ |
| not modelled | 8.5 | 13 | PDB header:lyase Chain: J: PDB Molecule:cyanate hydratase; PDBTitle: site directed mutagenesis of key residues involved in the2 catalytic mechanism of cyanase
39 | d1dxxa2 |
| not modelled | 8.4 | 10 | Fold:CH domain-like Superfamily:Calponin-homology domain, CH-domain Family:Calponin-homology domain, CH-domain
40 | d1sh5a2 |
| not modelled | 8.3 | 19 | Fold:CH domain-like Superfamily:Calponin-homology domain, CH-domain Family:Calponin-homology domain, CH-domain
41 | c1wylA_ |
| not modelled | 8.3 | 30 | PDB header:signaling protein Chain: A: PDB Molecule:nedd9 interacting protein with calponin homology PDBTitle: solution structure of the ch domain of human nedd92 interacting protein with calponin homology and lim domains
42 | d2a2ja1 |
| not modelled | 8.2 | 15 | Fold:Split barrel-like Superfamily:FMN-binding split barrel Family:PNP-oxidase like
43 | c2kncB_ |
| not modelled | 7.9 | 14 | PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
44 | c1x3uA_ |
| not modelled | 7.7 | 26 | PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein fixj; PDBTitle: solution structure of the c-terminal transcriptional2 activator domain of fixj from sinorhizobium melilot
45 | c2a2jA_ |
| not modelled | 7.6 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:pyridoxamine 5'-phosphate oxidase; PDBTitle: crystal structure of a putative pyridoxine 5'-phosphate oxidase2 (rv2607) from mycobacterium tuberculosis
46 | d1ku3a_ |
| not modelled | 7.6 | 12 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain
47 | c2pebB_ |
| not modelled | 7.4 | 10 | PDB header:oxidoreductase Chain: B: PDB Molecule:putative dioxygenase; PDBTitle: crystal structure of a putative dioxygenase (npun_f1925) from nostoc2 punctiforme pcc 73102 at 1.46 a resolution
48 | d3e9va1 |
| not modelled | 7.4 | 14 | Fold:BTG domain-like Superfamily:BTG domain-like Family:BTG domain-like
49 | c2d87A_ |
| not modelled | 7.2 | 15 | PDB header:structural protein, protein binding Chain: A: PDB Molecule:smoothelin splice isoform l2; PDBTitle: solution structure of the ch domain from human smoothelin2 splice isoform l2
50 | d1wb9a4 |
| not modelled | 7.2 | 13 | Fold:MutS N-terminal domain-like Superfamily:DNA repair protein MutS, domain I Family:DNA repair protein MutS, domain I
51 | c3smtA_ |
| not modelled | 7.2 | 19 | PDB header:transferase Chain: A: PDB Molecule:histone-lysine n-methyltransferase setd3; PDBTitle: crystal structure of human set domain-containing protein3
52 | d1bkra_ |
| not modelled | 7.2 | 15 | Fold:CH domain-like Superfamily:Calponin-homology domain, CH-domain Family:Calponin-homology domain, CH-domain
53 | d1ewqa4 |
| not modelled | 7.1 | 18 | Fold:MutS N-terminal domain-like Superfamily:DNA repair protein MutS, domain I Family:DNA repair protein MutS, domain I
54 | c3cwbC_ |
| not modelled | 6.8 | 11 | PDB header:oxidoreductase Chain: C: PDB Molecule:cytochrome b; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d
55 | d2z15a1 |
| not modelled | 6.8 | 14 | Fold:BTG domain-like Superfamily:BTG domain-like Family:BTG domain-like
56 | c3hilB_ |
| not modelled | 6.7 | 38 | PDB header:transferase Chain: B: PDB Molecule:ephrin type-a receptor 1; PDBTitle: sam domain of human ephrin type-a receptor 1 (epha1)
57 | d3dhxa1 |
| not modelled | 6.5 | 22 | Fold:Ferredoxin-like Superfamily:ACT-like Family:NIL domain-like
58 | d1ygya3 |
| not modelled | 6.5 | 12 | Fold:Ferredoxin-like Superfamily:ACT-like Family:Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
59 | d2af7a1 |
| not modelled | 6.3 | 6 | Fold:AhpD-like Superfamily:AhpD-like Family:CMD-like
60 | c2ogfD_ |
| not modelled | 6.2 | 12 | PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein mj0408; PDBTitle: crystal structure of protein mj0408 from methanococcus jannaschii,2 pfam duf372
61 | d1ulra_ |
| not modelled | 6.2 | 17 | Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like
62 | c3f6oB_ |
| not modelled | 5.9 | 18 | PDB header:transcription regulator Chain: B: PDB Molecule:probable transcriptional regulator, arsr family PDBTitle: crystal structure of arsr family transcriptional regulator,2 rha00566
63 | d2iw0a1 |
| not modelled | 5.9 | 6 | Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase
64 | c2d1uA_ |
| not modelled | 5.8 | 10 | PDB header:metal transport Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca; PDBTitle: solution strcuture of the periplasmic signaling domain of2 feca from escherichia coli
65 | d1ku7a_ |
| not modelled | 5.6 | 12 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain
66 | c3mgjA_ |
| not modelled | 5.6 | 18 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein mj1480; PDBTitle: crystal structure of the saccharop_dh_n domain of mj14802 protein from methanococcus jannaschii. northeast structural3 genomics consortium target mjr83a.
67 | c3dmyA_ |
| not modelled | 5.6 | 10 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein fdra; PDBTitle: crystal structure of a predicated acyl-coa synthetase from e.coli
68 | c2e8nA_ |
| not modelled | 5.4 | 33 | PDB header:transferase, signaling protein Chain: A: PDB Molecule:ephrin type-a receptor 2; PDBTitle: solution structure of the c-terminal sam-domain of ephaa2:2 ephrin type-a receptor 2 precursor (ec 2.7.10.1)
69 | d1euca2 |
| not modelled | 5.2 | 11 | Fold:Flavodoxin-like Superfamily:Succinyl-CoA synthetase domains Family:Succinyl-CoA synthetase domains
70 | c2yh5A_ |
| not modelled | 5.1 | 25 | PDB header:lipid binding protein Chain: A: PDB Molecule:dapx protein; PDBTitle: structure of the c-terminal domain of bamc
71 | c1zzvA_ |
| not modelled | 5.1 | 10 | PDB header:membrane protein, metal transport Chain: A: PDB Molecule:iron(iii) dicitrate transport protein feca; PDBTitle: solution nmr structure of the periplasmic signaling domain2 of the outer membrane iron transporter feca from3 escherichia coli.
72 | d1bhda_ |
| not modelled | 5.0 | 10 | Fold:CH domain-like Superfamily:Calponin-homology domain, CH-domain Family:Calponin-homology domain, CH-domain

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0