BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (341 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P76245 Probable diguanylate cyclase yeaP n=68 Tax=Gamma... 709 0.0 UniRef50_C6DD18 Diguanylate cyclase with GAF sensor n=2 Tax=Pect... 326 8e-88 UniRef50_D1SQF1 Diguanylate cyclase with GAF sensor n=1 Tax=Acid... 279 1e-73 UniRef50_A9BYA4 Diguanylate cyclase with GAF sensor n=7 Tax=Prot... 261 2e-68 UniRef50_D0KWP1 Diguanylate cyclase with GAF sensor n=1 Tax=Halo... 251 4e-65 UniRef50_D0IYV1 Diguanylate cyclase n=3 Tax=Burkholderiales RepI... 134 4e-30 UniRef50_B3PC21 Sensory box protein n=1 Tax=Cellvibrio japonicus... 120 7e-26 UniRef50_Q2BHU8 PAS:GGDEF protein n=1 Tax=Neptuniibacter caesari... 117 7e-25 UniRef50_Q1JXC9 Diguanylate cyclase/phosphodiesterase with PAS/P... 117 7e-25 UniRef50_Q5QZ80 Intracellular signaling protein (GAF,GGDEF,EAL d... 115 2e-24 UniRef50_A0K1H4 Diguanylate cyclase/phosphodiesterase n=1 Tax=Ar... 114 4e-24 UniRef50_Q3A112 Two component signal transduction response regul... 112 2e-23 UniRef50_C8QI11 Diguanylate cyclase/phosphodiesterase n=1 Tax=Pa... 111 3e-23 UniRef50_C9QE65 GGDEF family protein n=2 Tax=Vibrio RepID=C9QE65... 111 4e-23 UniRef50_C5V455 Diguanylate cyclase n=1 Tax=Gallionella ferrugin... 110 5e-23 UniRef50_B9M1S6 Diguanylate cyclase/phosphodiesterase with PAS/P... 110 6e-23 UniRef50_B8HWB1 Diguanylate cyclase/phosphodiesterase with FHA a... 110 6e-23 UniRef50_A9BW89 Diguanylate cyclase/phosphodiesterase with PAS/P... 110 7e-23 UniRef50_C4K931 Diguanylate cyclase/phosphodiesterase with PAS/P... 110 7e-23 UniRef50_B3EBJ4 Diguanylate cyclase/phosphodiesterase with PAS/P... 110 8e-23 UniRef50_A0LUU6 Diguanylate cyclase/phosphodiesterase with GAF s... 110 1e-22 UniRef50_Q21WB0 Diguanylate cyclase/phosphodiesterase n=1 Tax=Rh... 109 1e-22 UniRef50_Q2SLT6 Predicted signal transduction protein containing... 109 2e-22 UniRef50_A8ZY26 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 108 2e-22 UniRef50_C6NZE4 Diguanylate cyclase/phosphodiesterase with PAS/P... 108 2e-22 UniRef50_A1S4V3 GGDEF domain-like protein n=2 Tax=Shewanella Rep... 108 2e-22 UniRef50_Q2Y6N3 Response regulator receiver modulated diguanylat... 108 3e-22 UniRef50_Q609J7 Sensory box protein n=1 Tax=Methylococcus capsul... 108 3e-22 UniRef50_D1U882 Diguanylate cyclase/phosphodiesterase with PAS/P... 108 3e-22 UniRef50_C4ZL18 Response regulator receiver modulated diguanylat... 108 3e-22 UniRef50_B7JB43 Sensory box-containing diguanylate cyclase, puta... 108 4e-22 UniRef50_C9NPS7 Intracellular signaling protein (PAS,GAF,GGDEF d... 108 4e-22 UniRef50_Q46T37 PAS:GGDEF n=1 Tax=Ralstonia eutropha JMP134 RepI... 108 4e-22 UniRef50_Q486Y3 GGDEF/GAF/EAL domain protein n=1 Tax=Colwellia p... 107 4e-22 UniRef50_A4C531 Sensory box protein n=1 Tax=Pseudoalteromonas tu... 107 4e-22 UniRef50_Q31NI4 Response regulator receiver modulated diguanylat... 107 5e-22 UniRef50_B1KCF3 Diguanylate cyclase/phosphodiesterase with PAS/P... 107 5e-22 UniRef50_C7RK65 Diguanylate cyclase/phosphodiesterase with PAS/P... 107 6e-22 UniRef50_C6WYR4 Response regulator receiver modulated diguanylat... 107 6e-22 UniRef50_D2PTB3 Diguanylate cyclase with PAS/PAC and GAF sensors... 107 6e-22 UniRef50_D1VD15 Diguanylate cyclase/phosphodiesterase with PAS/P... 107 8e-22 UniRef50_C6WW34 Response regulator receiver modulated diguanylat... 107 8e-22 UniRef50_B1XYS1 Diguanylate cyclase/phosphodiesterase with PAS/P... 107 8e-22 UniRef50_A1TVU9 Diguanylate cyclase n=2 Tax=Acidovorax RepID=A1T... 107 9e-22 UniRef50_Q087W4 Diguanylate cyclase/phosphodiesterase with PAS/P... 107 9e-22 UniRef50_C7RN47 Diguanylate cyclase/phosphodiesterase with PAS/P... 106 9e-22 UniRef50_C9NSC0 GGDEF domain-like protein n=1 Tax=Vibrio coralli... 106 1e-21 UniRef50_D2YKV5 GGDEF family protein n=2 Tax=Vibrio mimicus RepI... 106 1e-21 UniRef50_C6HXY9 Diguanylate cyclase/phosphodiesterase with PAS/P... 106 1e-21 UniRef50_Q0RMV7 Putative sensor protein n=3 Tax=Frankia alni Rep... 106 1e-21 UniRef50_B4S2A8 Intracellular signaling protein (GAF,GGDEF,EAL d... 106 1e-21 UniRef50_A5ETK5 Diguanylate cyclase/phosphodiesterase with PAS/P... 106 1e-21 UniRef50_Q1K038 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 106 1e-21 UniRef50_B3EBJ5 Diguanylate cyclase/phosphodiesterase with PAS/P... 106 1e-21 UniRef50_B9ZPK3 Diguanylate cyclase/phosphodiesterase with PAS/P... 106 1e-21 UniRef50_C1D205 Putative diguanylate-cyclase n=1 Tax=Deinococcus... 105 2e-21 UniRef50_B6BK04 Diguanylate cyclase/phosphodiesterase n=1 Tax=Ca... 105 2e-21 UniRef50_A5VC79 Diguanylate cyclase n=1 Tax=Sphingomonas wittich... 105 2e-21 UniRef50_A1TZQ7 Diguanylate cyclase/phosphodiesterase with PAS/P... 105 2e-21 UniRef50_C7I0S2 Diguanylate cyclase/phosphodiesterase with GAF s... 105 2e-21 UniRef50_C5V5K2 Diguanylate cyclase/phosphodiesterase with PAS/P... 105 2e-21 UniRef50_Q5P4W8 Putative uncharacterized protein n=2 Tax=Proteob... 105 2e-21 UniRef50_Q2YCL1 Diguanylate cyclase/phosphodiesterase with PAS/P... 105 2e-21 UniRef50_A6GQ17 Diguanylate cyclase/phosphodiesterase (GGDEF & E... 105 2e-21 UniRef50_Q1JZB1 Diguanylate cyclase/phosphodiesterase with PAS/P... 105 2e-21 UniRef50_C3KQH8 Putative uncharacterized protein n=2 Tax=Rhizobi... 105 3e-21 UniRef50_Q1JY96 Diguanylate cyclase/phosphodiesterase with PAS/P... 105 3e-21 UniRef50_D1V8G1 Diguanylate cyclase/phosphodiesterase with PAS/P... 105 3e-21 UniRef50_C6E7Z7 Diguanylate cyclase/phosphodiesterase with extra... 105 3e-21 UniRef50_B4WG98 GGDEF domain protein n=1 Tax=Synechococcus sp. P... 105 3e-21 UniRef50_A6WA44 Diguanylate cyclase/phosphodiesterase with GAF s... 105 3e-21 UniRef50_Q1GYF3 Diguanylate cyclase/phosphodiesterase with PAS/P... 104 4e-21 UniRef50_C5CF99 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 104 4e-21 UniRef50_C6X9G9 Diguanylate cyclase/phosphodiesterase with PAS/P... 104 4e-21 UniRef50_C5ALJ3 Putative uncharacterized protein n=1 Tax=Burkhol... 104 4e-21 UniRef50_Q2C348 GGDEF domain protein n=1 Tax=Photobacterium sp. ... 104 4e-21 UniRef50_Q3IEZ9 Putative uncharacterized protein n=2 Tax=Pseudoa... 104 4e-21 UniRef50_C7LSS7 Diguanylate cyclase with beta propeller sensor n... 104 4e-21 UniRef50_Q3SG75 Putative diguanylate cyclase/phosphodiesterase (... 104 5e-21 UniRef50_C6P6X8 Diguanylate cyclase/phosphodiesterase with PAS/P... 104 5e-21 UniRef50_C6Q0A7 Putative phytochrome sensor protein (Fragment) n... 104 5e-21 UniRef50_A0KIJ4 MorA n=2 Tax=Aeromonas RepID=A0KIJ4_AERHH 104 5e-21 UniRef50_Q47GC0 Diguanylate cyclase/phosphodiesterase with PAS/P... 104 5e-21 UniRef50_Q5E289 GGDEF domain protein n=1 Tax=Vibrio fischeri ES1... 104 6e-21 UniRef50_A1STY4 Diguanylate cyclase/phosphodiesterase with PAS/P... 104 6e-21 UniRef50_C6P3H6 Diguanylate cyclase/phosphodiesterase with PAS/P... 103 7e-21 UniRef50_A1SFS0 Diguanylate cyclase/phosphodiesterase with PAS/P... 103 7e-21 UniRef50_A3Y6G1 Sensory box protein n=1 Tax=Marinomonas sp. MED1... 103 7e-21 UniRef50_Q15NC5 Diguanylate cyclase/phosphodiesterase n=1 Tax=Ps... 103 7e-21 UniRef50_A0YEH3 Sensory box/GGDEF family protein n=1 Tax=marine ... 103 7e-21 UniRef50_C1D1Y2 Putative diguanylate cyclase domain protein; put... 103 8e-21 UniRef50_Q15SE8 Diguanylate cyclase with GAF sensor n=1 Tax=Pseu... 103 8e-21 UniRef50_C4XM69 GGDEF domain protein n=1 Tax=Desulfovibrio magne... 103 8e-21 UniRef50_B7KGI8 Diguanylate cyclase with PAS/PAC and GAF sensors... 103 8e-21 UniRef50_C5SC92 Diguanylate cyclase/phosphodiesterase with PAS/P... 103 8e-21 UniRef50_Q60BD0 Sensory box protein n=1 Tax=Methylococcus capsul... 103 1e-20 UniRef50_C7RC12 Diguanylate cyclase/phosphodiesterase with PAS/P... 103 1e-20 UniRef50_Q31G31 Diguanylate cyclase/phosphodiesterase n=1 Tax=Th... 103 1e-20 UniRef50_A1TQ27 Periplasmic sensor diguanylate cyclase/phosphodi... 103 1e-20 UniRef50_B3E241 Diguanylate cyclase n=1 Tax=Geobacter lovleyi SZ... 102 1e-20 UniRef50_B0TJQ1 Diguanylate cyclase/phosphodiesterase with GAF s... 102 1e-20 UniRef50_Q47C60 Diguanylate cyclase/phosphodiesterase with PAS/P... 102 2e-20 UniRef50_B5ED91 Diguanylate cyclase/phosphodiesterase n=3 Tax=Ge... 102 2e-20 UniRef50_C6MGV8 Response regulator receiver modulated diguanylat... 102 2e-20 UniRef50_Q2BL49 Sensory box/GGDEF domain/EAL domain protein n=2 ... 102 2e-20 UniRef50_C5V3L4 Diguanylate cyclase/phosphodiesterase with PAS/P... 102 2e-20 UniRef50_A1SY75 Diguanylate cyclase/phosphodiesterase n=1 Tax=Ps... 102 2e-20 UniRef50_C5V4D4 Diguanylate cyclase/phosphodiesterase with PAS/P... 102 2e-20 UniRef50_B2UEP7 Diguanylate cyclase with PAS/PAC sensor n=6 Tax=... 102 2e-20 UniRef50_B0C776 Diguanylate cyclase/phosphodiesterase with EAL a... 102 2e-20 UniRef50_Q31GH8 Diguanylate cyclase/phosphodiesterase with PAS/P... 102 2e-20 UniRef50_B8GRM9 Signal transduction protein containing a membran... 102 2e-20 UniRef50_A1SZA9 Diguanylate cyclase/phosphodiesterase with PAS/P... 102 2e-20 UniRef50_Q2SP96 FOG: GGDEF domain n=1 Tax=Hahella chejuensis KCT... 102 3e-20 UniRef50_C5V069 Diguanylate cyclase/phosphodiesterase with PAS/P... 102 3e-20 UniRef50_B0U8W3 Diguanylate cyclase/phosphodiesterase n=7 Tax=Me... 102 3e-20 UniRef50_C5V330 Diguanylate cyclase with PAS/PAC and GAF sensors... 102 3e-20 UniRef50_Q39X25 Diguanylate cyclase/phosphodiesterase n=2 Tax=Ge... 102 3e-20 UniRef50_Q0AB93 Diguanylate cyclase/phosphodiesterase with PAS/P... 102 3e-20 UniRef50_D1V9H9 Diguanylate cyclase with PAS/PAC sensor n=3 Tax=... 101 3e-20 UniRef50_C4L987 Diguanylate cyclase/phosphodiesterase with PAS/P... 101 3e-20 UniRef50_B2UJT5 Diguanylate cyclase/phosphodiesterase with PAS/P... 101 3e-20 UniRef50_Q3SL48 Putative diguanylate cyclase/phosphodiesterase (... 101 3e-20 UniRef50_C8XD81 Diguanylate cyclase/phosphodiesterase n=1 Tax=Na... 101 3e-20 UniRef50_Q6REH3 Putative uncharacterized protein n=1 Tax=Rhodoco... 101 3e-20 UniRef50_Q5ZVT3 Inner membrane protein PLUS sensory box protein ... 101 3e-20 UniRef50_A5INK6 Diguanylate cyclase n=2 Tax=Thermotogaceae RepID... 101 4e-20 UniRef50_A7BSH2 Diguanylate cyclase/phosphodiesterase n=1 Tax=Be... 101 4e-20 UniRef50_C0QA93 Signal transduction family protein (GGDEF domain... 101 4e-20 UniRef50_C6X7I8 Response regulator receiver modulated diguanylat... 101 4e-20 UniRef50_C6MBX5 Diguanylate cyclase/phosphodiesterase n=1 Tax=Ni... 101 4e-20 UniRef50_B9Z0Y0 Diguanylate cyclase n=1 Tax=Lutiella nitroferrum... 101 4e-20 UniRef50_A6Q2C3 Signal transduction response regulator n=1 Tax=N... 101 4e-20 UniRef50_C5V1X8 Response regulator receiver modulated diguanylat... 101 4e-20 UniRef50_B1ZF36 Diguanylate cyclase n=1 Tax=Methylobacterium pop... 101 4e-20 UniRef50_B8HS15 Diguanylate cyclase with GAF sensor n=5 Tax=Bact... 101 5e-20 UniRef50_C6AS31 Diguanylate cyclase/phosphodiesterase with PAS/P... 101 5e-20 UniRef50_A3CZX0 Response regulator receiver modulated diguanylat... 101 5e-20 UniRef50_B9ZNJ0 Response regulator receiver modulated diguanylat... 101 5e-20 UniRef50_A3YDY6 Sensory box sensor/GGDEF/EAL domain protein n=1 ... 101 5e-20 UniRef50_C5S5K8 Response regulator receiver modulated diguanylat... 101 5e-20 UniRef50_A4G3M6 Putative two-component response regulator n=1 Ta... 101 5e-20 UniRef50_A4A7P9 Sensory box/GGDEF domain/EAL domain protein n=1 ... 100 5e-20 UniRef50_Q1Q678 Putative uncharacterized protein n=2 Tax=Bacteri... 100 5e-20 UniRef50_C6P1Q1 Diguanylate cyclase/phosphodiesterase with PAS/P... 100 6e-20 UniRef50_C1D6C2 Predicted signal transduction protein containing... 100 6e-20 UniRef50_C6RM97 Gaf/ggdef-domain containing protein n=5 Tax=Acin... 100 6e-20 UniRef50_B1KMM4 Diguanylate cyclase n=1 Tax=Shewanella woodyi AT... 100 6e-20 UniRef50_B4RZW0 GGDEF domain-containing PAS signal transduction ... 100 6e-20 UniRef50_C7HYH8 Diguanylate cyclase with GAF sensor n=1 Tax=Thio... 100 7e-20 UniRef50_Q3SK01 Putative diguanylate cyclase/phosphodiesterase (... 100 7e-20 UniRef50_Q2RU51 Diguanylate cyclase/phosphodiesterase with PAS/P... 100 7e-20 UniRef50_B3PL46 Response regulator n=2 Tax=Proteobacteria RepID=... 100 8e-20 UniRef50_A3JAE8 Predicted signal transduction protein containing... 100 8e-20 UniRef50_A1VEL8 Diguanylate cyclase/phosphodiesterase with PAS/P... 100 8e-20 UniRef50_C4L753 Diguanylate cyclase/phosphodiesterase with PAS/P... 100 8e-20 UniRef50_Q2BIE6 Sensory box/GGDEF/EAL domain protein n=1 Tax=Nep... 100 8e-20 UniRef50_A9BNX4 Diguanylate cyclase/phosphodiesterase n=3 Tax=Co... 100 8e-20 UniRef50_B5W389 Diguanylate cyclase with PAS/PAC and Chase2 sens... 100 9e-20 UniRef50_B6EN86 Putative uncharacterized protein n=1 Tax=Aliivib... 100 9e-20 UniRef50_C9YA12 Uncharacterized signaling protein PA1727 n=1 Tax... 100 9e-20 UniRef50_Q1QT31 Diguanylate cyclase/phosphodiesterase with GAF s... 100 9e-20 UniRef50_Q0RQ82 Putative sensory box/GGDEF family protein n=1 Ta... 100 1e-19 UniRef50_C1F5G2 GAF domain/GGDEF domain protein n=1 Tax=Acidobac... 100 1e-19 UniRef50_A3JB69 Sensory box/GGDEF/GAF/EAL domain protein n=1 Tax... 100 1e-19 UniRef50_C9PLR8 Diguanylate cyclase/phosphodiesterase with PAS/P... 100 1e-19 UniRef50_C1DPF7 Intracellular signalling protein with diguanylat... 100 1e-19 UniRef50_Q47ZI3 Sensory box/GGDEF/EAL/CBS domain protein n=1 Tax... 100 1e-19 UniRef50_B8E1P2 Diguanylate cyclase n=1 Tax=Dictyoglomus turgidu... 100 1e-19 UniRef50_Q0BZG3 Putative diguanylate cyclase n=1 Tax=Hyphomonas ... 100 1e-19 UniRef50_A8L1R7 Diguanylate cyclase/phosphodiesterase n=2 Tax=Fr... 100 1e-19 UniRef50_C0N9H7 GGDEF domain protein n=1 Tax=Methylophaga thioox... 100 1e-19 UniRef50_D1B2D0 Diguanylate cyclase n=1 Tax=Sulfurospirillum del... 100 1e-19 UniRef50_B9LZ98 Diguanylate cyclase/phosphodiesterase with PAS/P... 100 1e-19 UniRef50_P72843 Regulatory components of sensory transduction sy... 100 1e-19 UniRef50_C6CSH3 Diguanylate cyclase/phosphodiesterase with MHYT ... 100 1e-19 UniRef50_C5V4D8 Diguanylate cyclase/phosphodiesterase with PAS/P... 100 1e-19 UniRef50_C7LTY3 Diguanylate cyclase/phosphodiesterase with PAS/P... 100 1e-19 UniRef50_C8SP12 Diguanylate cyclase/phosphodiesterase with PAS/P... 100 1e-19 UniRef50_A6LXC6 Diguanylate cyclase/phosphodiesterase with PAS/P... 99 2e-19 UniRef50_Q1N196 Putative uncharacterized protein n=1 Tax=Bermane... 99 2e-19 UniRef50_C3MGT7 Putative diguanylate cyclase (GGDEF)/phosphodies... 99 2e-19 UniRef50_C5SQK5 Diguanylate cyclase/phosphodiesterase n=1 Tax=As... 99 2e-19 UniRef50_Q3JAR2 Diguanylate cyclase/phosphodiesterase with PAS/P... 99 2e-19 UniRef50_B9Z7T9 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 99 2e-19 UniRef50_A1WXR7 Diguanylate cyclase/phosphodiesterase with PAS/P... 99 2e-19 UniRef50_B4T6U5 Cyclic diguanylate phosphodiesterase (EAL) domai... 99 2e-19 UniRef50_Q47BF2 Diguanylate cyclase/phosphodiesterase with PAS/P... 99 2e-19 UniRef50_Q0C4X2 Bacterial signalling protein N terminal repeat/G... 99 2e-19 UniRef50_A6QAR7 Signal transduction protein n=1 Tax=Sulfurovum s... 99 2e-19 UniRef50_A8F4A7 Diguanylate cyclase n=1 Tax=Thermotoga lettingae... 99 2e-19 UniRef50_UPI0001C3146D diguanylate cyclase/phosphodiesterase wit... 99 2e-19 UniRef50_Q2W1Z2 Hypothetical 1041 kDa protein in hypE 3'region n... 99 2e-19 UniRef50_A4C4P9 Putative diguanylate cyclase/phosphodiesterase (... 99 2e-19 UniRef50_Q2BR68 Diguanylate cyclase/phosphodiesterase (GGDEF & E... 99 2e-19 UniRef50_C4L7I1 Diguanylate cyclase with PAS/PAC sensor and heme... 99 2e-19 UniRef50_B0CE49 Diguanylate cyclase/phosphodiesterase with PAS/P... 99 2e-19 UniRef50_Q5P4K8 Putative sensory box/GGDEF family protein n=1 Ta... 99 2e-19 UniRef50_C8Q608 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 99 2e-19 UniRef50_Q2SFI2 FOG: EAL domain n=1 Tax=Hahella chejuensis KCTC ... 99 2e-19 UniRef50_Q2RWY3 Diguanylate cyclase/phosphodiesterase n=1 Tax=Rh... 99 2e-19 UniRef50_B8DLV2 Diguanylate cyclase/phosphodiesterase with PAS/P... 99 2e-19 UniRef50_A8VVQ3 Putative uncharacterized protein n=1 Tax=Bacillu... 99 2e-19 UniRef50_B4B886 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 99 2e-19 UniRef50_Q8DKE8 Tlr0911 protein n=1 Tax=Thermosynechococcus elon... 99 2e-19 UniRef50_B8DQX2 Diguanylate cyclase/phosphodiesterase with PAS/P... 99 3e-19 UniRef50_B5ZRI4 Diguanylate cyclase n=9 Tax=Rhizobiales RepID=B5... 99 3e-19 UniRef50_Q0EYI6 Sensory box-containing diguanylate cyclase, puta... 99 3e-19 UniRef50_Q0B027 Diguanylate cyclase/phosphodiesterase (GGDEF & E... 99 3e-19 UniRef50_Q88QU8 Sensory box protein n=22 Tax=Gammaproteobacteria... 99 3e-19 UniRef50_A6VUG3 Diguanylate cyclase/phosphodiesterase n=1 Tax=Ma... 99 3e-19 UniRef50_B6BLX7 Response regulator receiver modulated diguanylat... 99 3e-19 UniRef50_A6QAC3 Putative uncharacterized protein n=1 Tax=Sulfuro... 99 3e-19 UniRef50_UPI0001C4305A PAS:GGDEF domain protein n=1 Tax=Bacillus... 99 3e-19 UniRef50_Q2SFK1 FOG: EAL domain n=1 Tax=Hahella chejuensis KCTC ... 99 3e-19 UniRef50_Q1N5U4 Response regulator containing a CheY-like receiv... 99 3e-19 UniRef50_A4A4U0 Sensory box/GGDEF family protein n=1 Tax=Congreg... 99 3e-19 UniRef50_O66912 Putative uncharacterized protein n=1 Tax=Aquifex... 98 4e-19 UniRef50_C4L7R2 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 98 4e-19 UniRef50_A4BJ07 Signal transduction protein containing a membran... 98 4e-19 UniRef50_B5XPJ6 GAF domain/diguanylate cyclase (GGDEF) domain pr... 98 4e-19 UniRef50_C7R8B2 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 98 4e-19 UniRef50_C3KAX1 Putative GGDEF domain signalling protein n=1 Tax... 98 4e-19 UniRef50_D2SGK4 Diguanylate cyclase/phosphodiesterase with PAS/P... 98 4e-19 UniRef50_Q21SZ9 Diguanylate cyclase/phosphodiesterase with PAS/P... 98 4e-19 UniRef50_Q0F205 Response regulator containing a CheY-like receiv... 98 4e-19 UniRef50_Q1LL50 Diguanylate cyclase/phosphodiesterase with PAS/P... 98 4e-19 UniRef50_UPI0001C313CD diguanylate cyclase/phosphodiesterase wit... 98 4e-19 UniRef50_Q7P0M4 Putative uncharacterized protein n=1 Tax=Chromob... 98 4e-19 UniRef50_Q1JX80 Diguanylate cyclase/phosphodiesterase with PAS/P... 98 4e-19 UniRef50_C7RS22 Diguanylate cyclase/phosphodiesterase with PAS/P... 98 4e-19 UniRef50_B0C4Z3 Diguanylate cyclase/phosphodiesterase with PAS/P... 98 4e-19 UniRef50_Q2SIG3 FOG: GGDEF domain n=2 Tax=Hahella chejuensis KCT... 98 5e-19 UniRef50_Q1LL52 Diguanylate cyclase (GGDEF domain) n=2 Tax=Cupri... 98 5e-19 UniRef50_Q8D786 FOG: GGDEF domain n=3 Tax=Vibrio RepID=Q8D786_VIBVU 98 5e-19 UniRef50_C8VZM6 Diguanylate cyclase with GAF sensor n=1 Tax=Desu... 98 5e-19 UniRef50_B1YFU4 Diguanylate cyclase with GAF sensor n=1 Tax=Exig... 98 5e-19 UniRef50_A0YPT5 Serine/Threonine protein kinase and Signal Trans... 98 5e-19 UniRef50_C6HTT7 Diguanylate cyclase/phosphodiesterase with PAS/P... 98 5e-19 UniRef50_Q602I2 Sensory box protein/response regulator n=1 Tax=M... 98 5e-19 UniRef50_Q7UUK0 Putative uncharacterized protein n=1 Tax=Rhodopi... 98 5e-19 UniRef50_A1K5S9 GGDEF/EAL-domain containing protein n=1 Tax=Azoa... 98 5e-19 UniRef50_A4VKH7 Sensory box/GGDEF family protein n=1 Tax=Pseudom... 98 5e-19 UniRef50_Q7MNE5 GGDEF family protein n=8 Tax=Vibrionales RepID=Q... 97 6e-19 UniRef50_Q31NF7 Diguanylate cyclase/phosphodiesterase (GGDEF & E... 97 6e-19 UniRef50_C5V280 Diguanylate cyclase/phosphodiesterase with PAS/P... 97 6e-19 UniRef50_C0GNF3 Diguanylate cyclase/phosphodiesterase n=1 Tax=De... 97 6e-19 UniRef50_Q483V3 Sensory box/GGDEF/EAL domain protein n=5 Tax=Alt... 97 6e-19 UniRef50_A4TXR0 PAS:GGDEF n=1 Tax=Magnetospirillum gryphiswalden... 97 6e-19 UniRef50_B5YAI5 Response regulator n=2 Tax=Dictyoglomus RepID=B5... 97 6e-19 >UniRef50_P76245 Probable diguanylate cyclase yeaP n=68 Tax=Gammaproteobacteria RepID=YEAP_ECOLI Length = 341 Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/341 (100%), Positives = 341/341 (100%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ Sbjct: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 Query: 61 KMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGS 120 KMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGS Sbjct: 61 KMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGS 120 Query: 121 FYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLT 180 FYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLT Sbjct: 121 FYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLT 180 Query: 181 GLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLN 240 GLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLN Sbjct: 181 GLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLN 240 Query: 241 TLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGI 300 TLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGI Sbjct: 241 TLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGI 300 Query: 301 VEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 VEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS Sbjct: 301 VEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 >UniRef50_C6DD18 Diguanylate cyclase with GAF sensor n=2 Tax=Pectobacterium carotovorum subsp. carotovorum RepID=C6DD18_PECCP Length = 348 Score = 326 bits (835), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 165/335 (49%), Positives = 224/335 (66%), Gaps = 5/335 (1%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 M+D +++ +S +L E + E LVRQLL MLE+VTD+ESTYLT+VD EA Q+I+FA N++ Sbjct: 1 MTDNLLSHLSNALRSEDTFEGLVRQLLVMLELVTDLESTYLTQVDTEAGFQNILFAHNTK 60 Query: 61 KMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGS 120 + IPE +V W +LCKRA+DE ++ V + WGD A+ LGI T+ STP+ + DG Sbjct: 61 TLNIPEGASVPWHDTLCKRALDEGQSYTPNVTECWGDSETAKALGIITYASTPVRMEDGQ 120 Query: 121 FYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLT 180 YGTLCAASS+ + + + EQ+L LFA LIAQ +QKE LV+QL AN AL SYTDSLT Sbjct: 121 LYGTLCAASSDHKPLTTKGEQILSLFAQLIAQQVQKEWLVQQLTAANVALHEYSYTDSLT 180 Query: 181 GLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLN 240 GL NRR +F +L LFS A++ + + +I FIDLD FK IND+F H +GD+FL +VG+RL Sbjct: 181 GLLNRRGVFYSLEALFSQAKNDHQQALIVFIDLDGFKKINDQFSHEAGDIFLQEVGQRLL 240 Query: 241 TLQQNGEVIGRLGGDEFLVVSLNN----ENADI-SSLRERIQQQIRGEYHLGDVDLYYPG 295 G+V+GRLGGDEF+ + N EN + +S R+ I ++G Y LG V + Y G Sbjct: 241 MWGNPGDVVGRLGGDEFVFARMVNVAPGENERVMASFRDDITPLLQGNYSLGTVSIDYLG 300 Query: 296 ASLGIVEVDPETTDADSALHAADIAMYQEKKHKQK 330 AS+GI DP + D + AD AMY K ++K Sbjct: 301 ASIGIATADPSVEEPDGVIRRADAAMYANKVTRKK 335 >UniRef50_D1SQF1 Diguanylate cyclase with GAF sensor n=1 Tax=Acidovorax avenae subsp. avenae ATCC 19860 RepID=D1SQF1_9BURK Length = 351 Score = 279 bits (713), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 143/331 (43%), Positives = 202/331 (61%), Gaps = 6/331 (1%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 ++ ++S S++ ++LE L R LLEML MVT +ESTYLT +D I+ ARNS + I Sbjct: 4 LLEQLSGSVSTARTLEDLTRPLLEMLSMVTGLESTYLTSIDEAQGTLRILHARNSGTLQI 63 Query: 65 PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGT 124 PE SWD + CKRA+DE ++ ++ RW D A R+LG+ + S P+ DG GT Sbjct: 64 PEGLVTSWDQTPCKRALDEGLRYASDISSRWADLAAVRDLGLRAYASMPVRTADGRLCGT 123 Query: 125 LCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 LCAAS+ R + E +L LFA LI Q I++E L+ +L AN L + TD+LTGL N Sbjct: 124 LCAASTRARPSTPETEHILTLFAHLIGQQIERERLIGELVCANERLARYAATDALTGLQN 183 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 RRA+ E+LT L S R + ++++AFIDLD FK INDR GH GD FL+ + +RL + + Sbjct: 184 RRALIESLTRLLSQGRRRHVEVLVAFIDLDRFKSINDRHGHEVGDQFLVAIAQRLRAVLR 243 Query: 245 NGEVIGRLGGDEFLVVSLNNENADI-----SSLRERIQQQIRGEYHLGDVDLYYPGASLG 299 +V+ R+GGDEF+V +L + D S RER+ Q +G + L D L Y GAS+G Sbjct: 244 EEDVVARMGGDEFVVAALGTQAGDAVHCPQESFRERVAQATQGRFVLPDATLDYEGASVG 303 Query: 300 IVEVDPETT-DADSALHAADIAMYQEKKHKQ 329 + V PE A+ AL AD MY+ K+ ++ Sbjct: 304 AIAVPPEQPLTAEQALDRADRQMYEVKQARR 334 >UniRef50_A9BYA4 Diguanylate cyclase with GAF sensor n=7 Tax=Proteobacteria RepID=A9BYA4_DELAS Length = 343 Score = 261 bits (667), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 138/334 (41%), Positives = 200/334 (59%), Gaps = 6/334 (1%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 + ++ R+SQS+ + SLE L R LL+MLE T +ESTYLT ++ E Q +++ARN+ +M Sbjct: 2 ESLVQRLSQSVTQAHSLEELTRPLLQMLEESTQLESTYLTTINEEQGQQRVLYARNASEM 61 Query: 63 YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY 122 IPE V W +LCKRA+DE ++ +V D WGD AAR LGI T+ S P+ DG Y Sbjct: 62 QIPEGLVVPWGDTLCKRALDEGRMYTPDVGDCWGDSEAARELGIRTYASAPVRFSDGQLY 121 Query: 123 GTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGL 182 GTLCAAS + S AE +L+LFA LIA+ +++E L+ L N L A + D LTGL Sbjct: 122 GTLCAASKSSQALSSEAEGMLRLFANLIAERVEREQLIASLNRTNRELAALALLDPLTGL 181 Query: 183 PNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTL 242 PNRR + + L L + +++ FIDLD FK +ND GH GD L +GERL+ Sbjct: 182 PNRRCLTDELGRLIARCARSQECVVVGFIDLDRFKNVNDEHGHEVGDALLRAMGERLSAH 241 Query: 243 QQNGEVIGRLGGDEFLVVSL-----NNENADISSLRERIQQQIRGEYHLGDVD-LYYPGA 296 ++ +++ R GGDEF+ + + + +A L++R+ + L D L Y GA Sbjct: 242 LRSADMLARFGGDEFVFIGVGPLFGSEADAVARELQQRLSDASAFQVDLPDGKTLDYGGA 301 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQK 330 S+G+V + P++ DAD AL AD AMY+ K + + Sbjct: 302 SVGVVCLRPDSIDADDALQKADAAMYRVKMARSR 335 >UniRef50_D0KWP1 Diguanylate cyclase with GAF sensor n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KWP1_HALNC Length = 352 Score = 251 bits (640), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 130/332 (39%), Positives = 198/332 (59%), Gaps = 3/332 (0%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 D I+ R++ LAK +LVR LLE++E +T ++S YLT++D ++Q IMF RN ++ Sbjct: 10 DPILDRLASVLAKSTDTATLVRPLLELMEHLTGLDSVYLTRIDWSNQVQTIMFTRNCHEL 69 Query: 63 YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY 122 IPE V +++LC+RAI+E FF +VP W D A ++GI T+LS P+ L D + Sbjct: 70 VIPEGLEVPLEHTLCRRAIEEQHFFEPDVPKHWADAHLAIDMGIQTYLSAPVRLADEEIF 129 Query: 123 GTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGL 182 GTLCA ++ + S ++++QLFA LIA I +E L+ L+ N A+ + TD+LTGL Sbjct: 130 GTLCALGADSTEISPSTQRIVQLFANLIAHQIDRERLITHLQADNRAIGELAMTDALTGL 189 Query: 183 PNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTL 242 PNR ++ L + R ++ + +AFIDLD FK INDR GH++GD FL + + L Sbjct: 190 PNRYSLRRALKRELANVRRMDQVLHLAFIDLDQFKEINDRHGHDAGDQFLQAIADALRNG 249 Query: 243 QQNGEVIGRLGGDEFLVVSLNNEN---ADISSLRERIQQQIRGEYHLGDVDLYYPGASLG 299 + G+ + R GGDEF+ ++ AD ++ R+ G + L + YPGAS+G Sbjct: 250 LREGDFVARYGGDEFVAFGISKNTAIAADEAAFAARLSDLTVGRFALASTIIDYPGASIG 309 Query: 300 IVEVDPETTDADSALHAADIAMYQEKKHKQKT 331 +V PE D D + AD AMY+ KK+++ T Sbjct: 310 VVTSTPEDHDIDELIERADQAMYRLKKNRRAT 341 >UniRef50_D0IYV1 Diguanylate cyclase n=3 Tax=Burkholderiales RepID=D0IYV1_COMTE Length = 562 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 63/161 (39%), Positives = 96/161 (59%), Gaps = 6/161 (3%) Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 D+LT LPNRR + L LF+LA +++AFIDLD FK IND +GH GD FL++VG Sbjct: 370 DALTNLPNRRHVMAQLDRLFALAGRTQQWVLVAFIDLDGFKAINDTYGHVVGDQFLVEVG 429 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSL------NNENADISSLRERIQQQIRGEYHLGDVD 290 R++ + +++GRLGGDEF+V+ L +++ + ++R R+ + G Y + Sbjct: 430 RRMSAGLRKSDMLGRLGGDEFVVIGLIAPPDPMDQDKALEAMRSRLAPLLIGSYKFAECS 489 Query: 291 LYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKT 331 YPGAS GIV DP + + L AD MY +K+ ++ + Sbjct: 490 FDYPGASFGIVSADPSASSPQAVLKEADQCMYADKQARRAS 530 >UniRef50_B3PC21 Sensory box protein n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PC21_CELJU Length = 1306 Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 97/330 (29%), Positives = 160/330 (48%), Gaps = 20/330 (6%) Query: 19 LESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCK 78 E+++R L E LE+ + S L D A+ + + Q + ENF S + + C Sbjct: 721 FETMLRALAEALEVEHVLIS--LLNPDDPAQASTHTYIKYGQ---LQENFDYSLNGTPCA 775 Query: 79 RAIDEN-CFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSE 137 +DEN CF + ++ D + I ++L I P G G L S + S Sbjct: 776 NVVDENLCFITTGAKIQYPDDHLFQLSNIDSYLGVGIRNPQGQHVGILIVMSEKALNVSP 835 Query: 138 RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFS 197 + +L +FA I+ + + + EQ+ ++ D LT LPNRR + + L + + Sbjct: 836 QVRSLLLIFAERISGELNRASDQEQIYRL-------AFFDPLTRLPNRRMLMDRLRLIIA 888 Query: 198 LARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEF 257 + + + + FIDLD+FKL+ND GH+ GD L+QV ER++++ + ++ RLGGDEF Sbjct: 889 QSARTSQQGALLFIDLDHFKLLNDTRGHHIGDQLLVQVAERISSIIRTTDLAARLGGDEF 948 Query: 258 LVVSLN-NENADISSLR-----ERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDAD 311 +VV N + D ++L E++ + I Y L +Y+ S+G+ + T D Sbjct: 949 VVVFDNLGTDPDKAALEAKHRAEQLHELINLPYPLQQ-SVYHCTISIGVNLFNANNTSID 1007 Query: 312 SALHAADIAMYQEKKHKQKTPFVAHPALHS 341 L AD+AMYQ K + T P + S Sbjct: 1008 DLLRHADVAMYQAKDGGRNTIRFFDPHMQS 1037 >UniRef50_Q2BHU8 PAS:GGDEF protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BHU8_9GAMM Length = 892 Score = 117 bits (293), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 122/246 (49%), Gaps = 27/246 (10%) Query: 111 STPIHLPDGS----FYGTLCAASSEKRQW-----SERAE----------QVLQLFAGLIA 151 +TP L G FY T+ + S+ W ++R +Q AG I Sbjct: 374 NTPAFLQSGKHSEDFYQTMMESLSKNNYWQGEVWNQRKSGEIYPQHLTITAVQTSAGEIT 433 Query: 152 QYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFI 211 Y+ + Q ++ A + ++ DSLTGLPNRR++ E L + S RH + FI Sbjct: 434 NYVGAFTDITQRKQDEADIHQLAFYDSLTGLPNRRSLQERLDSALSSCRHTRQLGAVFFI 493 Query: 212 DLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN------NE 265 DLDNFK +ND GH+ GD L++V RLN+ +N +++ RLGGDEF+V+ N N Sbjct: 494 DLDNFKNLNDTAGHDQGDKLLVEVANRLNSCVRNADMVARLGGDEFIVILENLGVDESNV 553 Query: 266 NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 A + + ++ I+ +G Y+P S+GI + E +D + +D+AMYQ K Sbjct: 554 LAQVKDIVAKVILTIQAPLTIG-TQAYHPTCSIGIA-LFSEKDFSDEVMKRSDMAMYQAK 611 Query: 326 KHKQKT 331 + T Sbjct: 612 SSGKNT 617 >UniRef50_Q1JXC9 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JXC9_DESAC Length = 888 Score = 117 bits (293), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 127/257 (49%), Gaps = 13/257 (5%) Query: 77 CKRAIDEN-CFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQW 135 C++ +DE C S+ V + + +C + ++ TPI +G G L S K + Sbjct: 362 CEKVVDEGMCLMSEGVMEHYPNCSLVTQMHAEGYVGTPIRDHNGEVLGVLSVLSRGKIKS 421 Query: 136 SERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTL 195 ERA+ VL + A ++ I++E ++LR+ L Y D LT LPNR+ + L Sbjct: 422 LERAKDVLAIMAARVSAEIEREISEQRLRDNEDHLEYLVYHDVLTDLPNRQLFRDRLQHA 481 Query: 196 FSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGD 255 S+A H++ + FIDLD+FK IND GH GD L +V RL + + RL GD Sbjct: 482 ISMASLGQHQVGVLFIDLDHFKKINDSLGHEVGDRLLCEVARRLRLCIGGLDTVARLSGD 541 Query: 256 EFLVV--SLNN-ENADI--SSLRERIQQQIRGE-YHLGDVDLYYPGASLGIVEVDPETTD 309 EF ++ LNN EN + + R+ + + E Y L + AS+GI + D Sbjct: 542 EFAIILDQLNNIENVILIAQEVNRRLAEMMVVEGYKL------FLTASIGISLYPGDGKD 595 Query: 310 ADSALHAADIAMYQEKK 326 S L AD AM++ K+ Sbjct: 596 VVSLLKCADAAMFKAKE 612 >UniRef50_Q5QZ80 Intracellular signaling protein (GAF,GGDEF,EAL domains) n=2 Tax=Idiomarina RepID=Q5QZ80_IDILO Length = 866 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 70/210 (33%), Positives = 121/210 (57%), Gaps = 6/210 (2%) Query: 120 SFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQK-EALVEQLREANAALIAQSYTDS 178 +F A + ++++ +E ++V Q +A+ ++ + +E+ ++ ++L ++ D+ Sbjct: 385 NFVSQHVAVAIDRKRSAEEIQRVNQFLEKKVAERTEELVSEIERRKKTESSLFHAAHHDN 444 Query: 179 LTGLPNRRAIFENLTTLFSLAR-HLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 LTGLPNR E L + R H H + F+DLD FK IND GH++GD FL++V + Sbjct: 445 LTGLPNRILFNERLQQAVAHKRRHPEHHFAVLFVDLDRFKNINDTLGHSAGDEFLLEVSK 504 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNNENA--DISSLRERIQQQIRGEYHLGDVDLYYPG 295 R+ ++ +++ RLGGDEF+++ L+ + D + +R+ QQ+ +HL + +Y G Sbjct: 505 RIGDCVRDNDMVARLGGDEFVIL-LDTITSIDDAKDVAKRMIQQMSEPFHLNGQE-HYSG 562 Query: 296 ASLGIVEVDPETTDADSALHAADIAMYQEK 325 AS+GI E ET A+ L AD AMYQ K Sbjct: 563 ASIGIAECLEETDSAERLLRDADAAMYQAK 592 >UniRef50_A0K1H4 Diguanylate cyclase/phosphodiesterase n=1 Tax=Arthrobacter sp. FB24 RepID=A0K1H4_ARTS2 Length = 732 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 66/161 (40%), Positives = 94/161 (58%), Gaps = 8/161 (4%) Query: 177 DSLTGLPNRRAIFENLTTLF---SLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 D LTGL NR A+ E LT F S R+ N ++ FID+D+FK +ND GH GD LI Sbjct: 291 DPLTGLANRAALMERLTASFGAGSTRRNRNEGLL--FIDIDDFKEVNDSLGHERGDALLI 348 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISS-LRERIQQQIRGEYHLGDVDLY 292 Q+ RL ++ +V+ RLGGDEF +V ++++ +++ + +RI + +R + +GD D Sbjct: 349 QLAARLKGCVRSDDVVARLGGDEFAIVVMDDDAGSVTAWIADRIHRALRAPFFVGD-DRL 407 Query: 293 YPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPF 333 AS+G + PETTDA L AD AMY KH K F Sbjct: 408 TVTASMGAAQRRPETTDAAELLRQADFAMYL-AKHGGKARF 447 >UniRef50_Q3A112 Two component signal transduction response regulator n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A112_PELCD Length = 429 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 71/189 (37%), Positives = 103/189 (54%), Gaps = 3/189 (1%) Query: 146 FAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHK 205 AG++ +++ QL N L Q+ DSLTGLPNRR + + L + AR N + Sbjct: 238 LAGVVTDITEQKDAQLQLLILNRKLQQQATHDSLTGLPNRRLLIDRLEQALARARRNNGR 297 Query: 206 IMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEF-LVVSLNN 264 + + FIDLD FK +NDR GH +GD L +G RL+ L ++ + RLGGDEF LV+S Sbjct: 298 LAMLFIDLDGFKAVNDRLGHTAGDEVLEIIGRRLSHLLRSADTAARLGGDEFGLVLSKIK 357 Query: 265 ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQE 324 + D S + +++ + I + + D + Y GAS+GI AD + AD AMY+ Sbjct: 358 DKQDASLVAQKVLEAIASPFIIRD-ERCYIGASIGISLYPEHGLSADDLISRADTAMYK- 415 Query: 325 KKHKQKTPF 333 KH K F Sbjct: 416 VKHSGKGTF 424 >UniRef50_C8QI11 Diguanylate cyclase/phosphodiesterase n=1 Tax=Pantoea sp. At-9b RepID=C8QI11_9ENTR Length = 732 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 92/153 (60%), Gaps = 2/153 (1%) Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 ++ D LTGLPNR + + L+ ++A +H++ + IDLD FK IND +GH++GD +I Sbjct: 314 AFHDVLTGLPNRSMVEDRLSQALAMAARYDHRVALLLIDLDRFKTINDTYGHHAGDELII 373 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLY 292 QVG RL ++ + + +GR+GGDEF++V + +N + SL +RI + Y L + + Sbjct: 374 QVGHRLTSIVRASDTVGRIGGDEFIIVMPDVDNIGQVQSLAKRIISALSEPYQLFGSEAW 433 Query: 293 YPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 GAS+G+ + D + ADIA+Y+ K Sbjct: 434 I-GASIGLALAPKDGLDRQELMRKADIALYEAK 465 >UniRef50_C9QE65 GGDEF family protein n=2 Tax=Vibrio RepID=C9QE65_VIBOR Length = 457 Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 68/169 (40%), Positives = 94/169 (55%), Gaps = 2/169 (1%) Query: 161 EQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLIN 220 +QL+ LI S D LT L NRRA L + A K+ + FIDLD+FK IN Sbjct: 260 QQLKHKQEQLIFLSEHDPLTNLVNRRAFDRQLESAIVKANRTECKLALMFIDLDDFKCIN 319 Query: 221 DRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLV-VSLNNENADISSLRERIQQQ 279 D +GH++GD LIQV ERL + + +GRLGGDEF++ + L N+ + +SS +I+Q Sbjct: 320 DTYGHDAGDFVLIQVAERLEECIRESDFVGRLGGDEFVICLDLLNDFSIVSSKVAQIEQA 379 Query: 280 IRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHK 328 IR + L GAS+G+ T + D+ + AD AMY KK K Sbjct: 380 IREPITFHERTLQV-GASIGVSHFPDHTKNMDALICLADEAMYNAKKTK 427 >UniRef50_C5V455 Diguanylate cyclase n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V455_9PROT Length = 315 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 62/156 (39%), Positives = 85/156 (54%) Query: 170 LIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGD 229 L ++ D LTGLPNR + + L+ S+A I + FIDLD FK +ND +GH GD Sbjct: 146 LFGLAHFDQLTGLPNRTLLLDRLSQGISVANRTERAISLLFIDLDGFKYVNDSYGHAIGD 205 Query: 230 LFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDV 289 L +V RL + + G+ R+GGDEF+V+ L + S+ RI +R Y LG Sbjct: 206 SLLKEVATRLLSCLREGDTAARMGGDEFVVILLESNIERAVSVANRILNILRSHYELGKK 265 Query: 290 DLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 D+ AS+GI E D ++ L AAD AMYQ K Sbjct: 266 DISCISASIGIAEHPDHADDVNALLTAADKAMYQAK 301 >UniRef50_B9M1S6 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Geobacter RepID=B9M1S6_GEOSF Length = 749 Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 100/186 (53%), Gaps = 9/186 (4%) Query: 146 FAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHK 205 FA L+ Q++ EQ+R +Y D+LTGLPNR + + L + + AR + Sbjct: 280 FAFLMEDVTQRKVNEEQIRRL-------AYYDNLTGLPNRALLMDRLEQMLTKARRDKTR 332 Query: 206 IMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVV-SLNN 264 +++ F+DLD FK+IND GH GD L+QV RL ++ + + R+GGDEF+V+ +L Sbjct: 333 VVLLFLDLDRFKVINDTMGHAHGDQLLVQVANRLRQALRSSDTLARIGGDEFVVLFTLEG 392 Query: 265 ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQE 324 ++S L + + I Y + D+ Y S+GI + D +S L AD+AMY Sbjct: 393 PQLNVSPLAQHLIDSITSVYPISGRDV-YASTSIGIATFPDDGGDCNSLLRCADMAMYAA 451 Query: 325 KKHKQK 330 K+ K Sbjct: 452 KEGGGK 457 >UniRef50_B8HWB1 Diguanylate cyclase/phosphodiesterase with FHA and GAF sensor n=2 Tax=Cyanothece sp. PCC 7425 RepID=B8HWB1_CYAP4 Length = 884 Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 77/230 (33%), Positives = 116/230 (50%), Gaps = 13/230 (5%) Query: 105 GITTFLSTPIHLPDGSFYGTLC-AASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQL 163 GI + L PI L D +G + A R WS+ E VL + A I+ IQ++ + + Sbjct: 386 GIKSLLIVPI-LVDDQLWGCIGFDACQSSRCWSKNEEAVLAMMAVSISGAIQRQHKEQVI 444 Query: 164 REANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRF 223 R Q++ D LT LPNR + L S A K+ + F+DLD FK IND Sbjct: 445 R-------YQAFHDLLTDLPNRALFIDRLNLALSNAHRSGEKLSVLFLDLDRFKTINDTL 497 Query: 224 GHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEF--LVVSLNNENADISSLRERIQQQIR 281 GH+ GD L V RL + G+ I R GGDEF L+ ++ N D++ +R+ + Sbjct: 498 GHSVGDQLLKAVAHRLTHCLREGDTIARWGGDEFTILLPQIHQVN-DVAKTAQRMLSALE 556 Query: 282 GEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKT 331 +HL + +LY S+GI D + D ++ + AD+A+YQ K+ + T Sbjct: 557 QPFHLENHELYI-TPSIGIAIYDLDGHDGETLIKHADMALYQAKQLGRNT 605 >UniRef50_A9BW89 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=7 Tax=cellular organisms RepID=A9BW89_DELAS Length = 947 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 92/337 (27%), Positives = 153/337 (45%), Gaps = 23/337 (6%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 M + + R +++A++Q L ++ + +E + + + +VD ++RL H + A + Sbjct: 332 MHEVLQRRALEAMARDQPLTEVLDLVCREVERIAPDIAVSVLEVDDQSRL-HPLAAPSLP 390 Query: 61 KMYIP--ENFTVSWDYSLCKRAIDEN--CFFSDEVPDR-WGDCI-AARNLGITTFLSTPI 114 Y + + + C A N D D W D LG T STPI Sbjct: 391 ASYSAALDGVPIGPNVGSCGAAAFHNRPVLVGDIATDPLWADFKHLILPLGYTACWSTPI 450 Query: 115 HLPDGSFYGTLCAASSEKRQWSERA-----EQVLQLFAGLIAQYIQKEALVEQLREANAA 169 G GT + R + +++++ L A +++E ++R+ Sbjct: 451 CGLQGGVAGTF---AFYYRHFDRPGPDPFHQRLVEACTDLCALALEREQARRRIRQL--- 504 Query: 170 LIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGD 229 ++ D LT LPNR + S+A H H++ + FIDLD FK +ND GH +GD Sbjct: 505 ----AFYDGLTTLPNRSLLLAQAEQALSVASHEGHELAVVFIDLDRFKQVNDSLGHPAGD 560 Query: 230 LFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDV 289 L V +R+ + G++ GRL GDEF++V + A + + ER+Q + + DV Sbjct: 561 RLLCSVAQRIQAELRTGDIAGRLSGDEFVIVLPHCGGAQAAEVIERLQSALGEPCMIDDV 620 Query: 290 DLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 L AS GI + D ++ LH AD+AMYQ K Sbjct: 621 SLAST-ASCGIAVFPADGRDMETLLHRADMAMYQAKS 656 >UniRef50_C4K931 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Thauera sp. MZ1T RepID=C4K931_THASP Length = 855 Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 124/233 (53%), Gaps = 13/233 (5%) Query: 116 LPDGSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAAL 170 L DG + G + +R+ E Q+L + A G++ Y + +L+E A + Sbjct: 370 LGDGQWQGEVW----NRRKTGEVYPQLLHITAIRDREGVLTHYAALFTDISRLKETEARI 425 Query: 171 IAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDL 230 +Y D LTGLPNRR + + L + A L ++ + F+DLD FK IND GH GD Sbjct: 426 RDLAYYDPLTGLPNRRLLDDRLQVELAHAARLRCRLAVMFVDLDRFKRINDSLGHAVGDK 485 Query: 231 FLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA--DISSLRERIQQQIRGEYHLGD 288 L+++ RL ++ + + R+GGDEFLVV LNN + + +++ R+ ++R ++ Sbjct: 486 LLVEIAARLRASLRDDDTVARMGGDEFLVV-LNNLSGPDEAATMARRMVAELRRPVNVEG 544 Query: 289 VDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 +L S+G+ ++ DAD+ + AD+AMY+ K + + + PA+++ Sbjct: 545 RELVVT-TSVGVAVYPDDSRDADTLVKHADVAMYRAKDEGRNSFQLFEPAMNA 596 >UniRef50_B3EBJ4 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Geobacter lovleyi SZ RepID=B3EBJ4_GEOLS Length = 693 Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 87/320 (27%), Positives = 145/320 (45%), Gaps = 24/320 (7%) Query: 13 LAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSW 72 +++ + E +R E M+ + +S + +VD+E RLQ FA S M Sbjct: 110 ISRHKRAEQALRLSEERYRMLVEHQSDLVVRVDIEGRLQ---FASPSFCMLF-------- 158 Query: 73 DYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEK 132 IDE E+ I + + + S Y +C+ + + Sbjct: 159 -------GIDEEQLVGREL----CPIINSSGQAVMKEAMQRLDCHPKSCYHEICSQTLDG 207 Query: 133 RQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENL 192 +W A + + G I + + ++A ++ ++ D+LTGLPNR + + L Sbjct: 208 LRWIGWAMKGVVDEKGHIEAIVGIGRDITDRKKAEQEILQLAHYDTLTGLPNRSLLQDRL 267 Query: 193 TTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRL 252 + SLA N + + F+DLD FK +ND FGH GDL L +V RL + + + R+ Sbjct: 268 SQALSLANRGNVTLAVLFLDLDRFKHVNDAFGHQIGDLLLQEVSRRLKDCVRATDTVSRI 327 Query: 253 GGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDAD 311 GGDEF+++ N + + S+ +I + + LG +L Y G S+GI + D D Sbjct: 328 GGDEFVIILTNLIKCSQAGSIAAKIISSMSRLFQLGGHEL-YSGTSIGIALYPTDGNDVD 386 Query: 312 SALHAADIAMYQEKKHKQKT 331 + L AD+AMYQ K + T Sbjct: 387 TLLKHADMAMYQAKASGRGT 406 >UniRef50_A0LUU6 Diguanylate cyclase/phosphodiesterase with GAF sensor n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LUU6_ACIC1 Length = 746 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 69/240 (28%), Positives = 119/240 (49%), Gaps = 11/240 (4%) Query: 103 NLGITTFLSTPIHLPDGSFYGTLCAASSEK-RQWSERAEQVLQLFAGLIAQYIQKEALVE 161 + +T L+ +H +G G L AA+++ R W + + L +FA + I VE Sbjct: 247 GIAVTRALAGVVH-ENGRIAGALIAATTDPARLWRDADREALGVFADHVTLAITDATTVE 305 Query: 162 QLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLIND 221 + A + DSLTGL +R + L + A + + FIDLD FK++ND Sbjct: 306 AMNRA--------FHDSLTGLASRALFLDRLNLGLAQAARSGTNLCLLFIDLDRFKIVND 357 Query: 222 RFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIR 281 GH +GD+ L+++ RL + + + R GGDEF+ + + + + + RI +R Sbjct: 358 TLGHAAGDVLLVEIANRLRSCLRASDTAARYGGDEFVALLHDTDVRGAAIVAARIIDAVR 417 Query: 282 GEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 +G++D+ AS+GI T AD L +AD+AMY+ K+ + + P++H+ Sbjct: 418 QPLRVGEMDVTV-DASIGIACSVAGGTAADDLLRSADVAMYRAKRAGRGRYAIYEPSMHA 476 >UniRef50_Q21WB0 Diguanylate cyclase/phosphodiesterase n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21WB0_RHOFD Length = 499 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 57/155 (36%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 Q+ D LTGLPNR +L+ AR ++ + F+DLD F+ +ND FGH +GD L Sbjct: 71 QATHDELTGLPNRWLFHLHLSQALVRARRTGLRVAVLFLDLDYFRSVNDSFGHTTGDALL 130 Query: 233 IQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADIS-SLRERIQQQIRGEYHLGDVDL 291 +QVG R+ + + + + RLGGDEF ++ + +N D + + ++ ++ Y L D D+ Sbjct: 131 VQVGTRIRSTLRENDTLARLGGDEFAILLADMKNVDEAVRVASKLLLSLQASYRLQDQDV 190 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 Y G SLG+ + D+D+ L AD+AMYQ K+ Sbjct: 191 -YSGGSLGLAFYPDDAQDSDTLLRYADMAMYQAKQ 224 >UniRef50_Q2SLT6 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SLT6_HAHCH Length = 928 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/154 (38%), Positives = 90/154 (58%), Gaps = 2/154 (1%) Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 Q+Y D LT LPNR +FE+L +L + + ++ + FIDLD FK +ND GH GD L Sbjct: 492 QAYYDPLTRLPNRSYLFEHLNSLIASHKREQARLAVLFIDLDRFKQVNDNLGHGVGDKLL 551 Query: 233 IQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDL 291 QV RL + + +++ RLGGDEF VV + E D + + + QQ+ + +GD +L Sbjct: 552 QQVSTRLKSRLRESDMLARLGGDEFTVVLPHLREETDAIHVAKMLLQQLADSFSVGDYEL 611 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 + GAS+G+ + DA + + ADIAMY+ K Sbjct: 612 HI-GASIGVTLFPKDGEDASTLIKNADIAMYKAK 644 >UniRef50_A8ZY26 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZY26_DESOH Length = 434 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/162 (37%), Positives = 90/162 (55%) Query: 164 REANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRF 223 RE L+ Q+ DSLTGL NR A L + +R H++ + F+DLD FK NDRF Sbjct: 259 REKEKVLLYQASHDSLTGLYNRDAFGVCLADMIGRSRRTGHRMGLLFLDLDRFKEANDRF 318 Query: 224 GHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGE 283 GH++GD + +V RL + +V+ R GGDEF+V+ E D ++ E++ +I Sbjct: 319 GHDTGDDLIREVARRLTGSLRETDVVSRYGGDEFVVILNGGEYLDPETVAEKLLDRISAP 378 Query: 284 YHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 YH+ + + AS+GI + TD D+ + AD AMY+ K Sbjct: 379 YHINGHTIDFLSASIGISLFPEDGTDPDTLVRQADQAMYRAK 420 >UniRef50_C6NZE4 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6NZE4_9PROT Length = 727 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/186 (36%), Positives = 102/186 (54%), Gaps = 7/186 (3%) Query: 146 FAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHK 205 +G + Y+ + V + +EA A + ++ D LT LPNRR + E L FS+ H Sbjct: 269 ISGNLLYYVGIFSDVTKRKEAEAQIHQLAFYDPLTELPNRRLLNERLQQAFSVGARSGHH 328 Query: 206 IMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVV----- 260 + F+DLDNFK +ND GH+ GD LI+V +RLN+ +NG+ + RLGGDEF+VV Sbjct: 329 GAVLFLDLDNFKTLNDTKGHDIGDQLLIEVAKRLNSCVRNGDTVARLGGDEFVVVLESLS 388 Query: 261 SLNNENADISSL-RERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADI 319 S+ +E A + L E+I+ + Y L + ++ S+G+V + L AD Sbjct: 389 SVPDEAATQADLVAEKIRYALSQPYQLAN-HVHRTTPSIGVVMFRGHQQSLEEVLKFADT 447 Query: 320 AMYQEK 325 AMYQ K Sbjct: 448 AMYQAK 453 >UniRef50_A1S4V3 GGDEF domain-like protein n=2 Tax=Shewanella RepID=A1S4V3_SHEAM Length = 324 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 79/245 (32%), Positives = 117/245 (47%), Gaps = 18/245 (7%) Query: 91 VPD-----RWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQL 145 VPD RW D ++ ++L PI PDG +GTLC S Q+ +VL + Sbjct: 87 VPDASQDPRWHDNPEFQDDHYISYLGMPIIWPDGDTFGTLCVLSDVVTQYPATYLKVLNV 146 Query: 146 FAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHK 205 +I L RE L+ QSY D LT + NRR E LA L K Sbjct: 147 IRDVI-----NADLAHMYRENQ--LLNQSYLDPLTKIYNRRGFEELFEKNQQLALRLGRK 199 Query: 206 IMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNE 265 +++ DLD FK IND +GH +GD L L + + +++ R GGDEFLV++ + Sbjct: 200 MVLISFDLDGFKPINDNYGHITGDKILAFFATSLKSSCRGSDLVARWGGDEFLVLAHSET 259 Query: 266 NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPET-TDADSALHAADIAMYQE 324 +S+ R+ + + + L D S+G++++DP T + DS L + D MY Sbjct: 260 EQLENSVLLRLDEHLAHQNQLPKFDY-----SVGMLQLDPATHYELDSLLPSVDARMYHH 314 Query: 325 KKHKQ 329 K+ KQ Sbjct: 315 KRTKQ 319 >UniRef50_Q2Y6N3 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2Y6N3_NITMU Length = 1025 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/210 (34%), Positives = 111/210 (52%), Gaps = 9/210 (4%) Query: 119 GSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDS 178 G YG L A S E ++++ + LQ A ++A I ++ E+L +AQ D Sbjct: 539 GGPYGILGAYSPEPQRFTSSSINFLQSLANILATAIDRKTTEERL-----TYLAQ--FDP 591 Query: 179 LTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGER 238 LT LPNR + L A ++ + F DLD FK++ND GH++GD LI V +R Sbjct: 592 LTELPNRSLFLDRLRQAMEHAHRNRRRVGVVFADLDRFKIVNDTMGHSTGDELLIHVAKR 651 Query: 239 LNTLQQNGEVIGRLGGDEF-LVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGAS 297 L ++ + + RLGGDEF L++S + D + + E++ ++ + L ++Y AS Sbjct: 652 LQQCVRSCDTVARLGGDEFALILSDLVQPEDATLIAEKVISALQVPFELETQEIYV-SAS 710 Query: 298 LGIVEVDPETTDADSALHAADIAMYQEKKH 327 LGI + TDADS L AD AM+Q K+ Sbjct: 711 LGISIYPGDGTDADSLLRNADTAMFQAKEQ 740 >UniRef50_Q609J7 Sensory box protein n=1 Tax=Methylococcus capsulatus RepID=Q609J7_METCA Length = 712 Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 67/173 (38%), Positives = 92/173 (53%), Gaps = 2/173 (1%) Query: 160 VEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLI 219 + Q REA + ++ D LT LPNR + L LAR +++ + FIDLDNFK I Sbjct: 269 ITQRREAEDRIKHLAHHDPLTNLPNRVFLHGRLEQAIELARREQNQVAVMFIDLDNFKRI 328 Query: 220 NDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADIS-SLRERIQQ 278 ND GH GD L QV RL +V+GRLGGDEF+VV N + S ++ ERI + Sbjct: 329 NDTLGHRIGDALLEQVAARLTENVPGSQVVGRLGGDEFIVVITGNRVSTTSAAMAERILE 388 Query: 279 QIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKT 331 + Y + D L + GAS+GI + A++ + AD AMY K + T Sbjct: 389 SLCRPYTVEDYQL-HSGASIGIAIYPADGNSAETLMKHADAAMYHAKSRGRNT 440 >UniRef50_D1U882 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U882_9DELT Length = 958 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 113/222 (50%), Gaps = 11/222 (4%) Query: 119 GSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIAQ 173 GS++G + +R+ E ++L + + G IA Y+ + ++ L Sbjct: 469 GSWHGEIW----NRRKNGESYPEILSISSIRDDDGEIANYVAVFHDISDMKHKEEQLAHH 524 Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 Y D LTGLPNR + + L+ S A K+ + F+DLDNFK IND FGH GD L Sbjct: 525 LYHDGLTGLPNRVLVLDRLSMALSHANRTGTKVAVLFLDLDNFKKINDSFGHAQGDTLLK 584 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLY 292 V ERL L ++ + + R GGDEFLVV ++ +E ++ L E +Q+ + + +++ Sbjct: 585 AVAERLVALYRDEDTVARQGGDEFLVVVVDVHEEREVVDLAEGLQRVFEEPFVIKGQEVF 644 Query: 293 YPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFV 334 S+G+ + D S + AD+AMYQ K + + F+ Sbjct: 645 IT-PSIGVTLYPDDGQDPASLVKNADMAMYQSKAKGRNSYFL 685 >UniRef50_C4ZL18 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase n=1 Tax=Thauera sp. MZ1T RepID=C4ZL18_THASP Length = 737 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 82/271 (30%), Positives = 128/271 (47%), Gaps = 15/271 (5%) Query: 69 TVSWDYSLCKRAIDENCFFSDE---VPDRWGDCIAAR-NLGITTFLSTPIHLPDGSFYGT 124 T S S C A+ + F E + R+ D R + GI + P+ +P G GT Sbjct: 185 TTSRSVSFCAHALLGDGLFEVEDATLDPRFADNPLVRGDPGIRFYAGMPLVMPGGEVVGT 244 Query: 125 LCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLRE-------ANAALIAQSYTD 177 LC S R+ A + L + A + ++ V +L E A A ++ + D Sbjct: 245 LCVIDSRPRRLGATAREALAVLARSVTDELELRQRVGELEEEVARRHEAEARIMQLATRD 304 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 +LTGLPNR A+ + L A+ + + + F+DLD FK IND GH+ GD L ++ Sbjct: 305 ALTGLPNRAALMDRLHQGVRAAQRSGNLLAVLFLDLDRFKWINDTLGHDLGDALLQEMAL 364 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNN--ENADISSLRERIQQQIRGEYHLGDVDLYYPG 295 RL+ + + + RLGGDEF +V L + + AD ++ +I I + L G Sbjct: 365 RLSRAVRECDTVARLGGDEFAIV-LGDLWQVADAEAVAAKIVDVITRPLEVRGHALRV-G 422 Query: 296 ASLGIVEVDPETTDADSALHAADIAMYQEKK 326 S+G+ + D +S L AD+AMY K+ Sbjct: 423 GSVGVAVYPFQAHDEESLLRHADLAMYHAKE 453 >UniRef50_B7JB43 Sensory box-containing diguanylate cyclase, putative n=1 Tax=Acidithiobacillus ferrooxidans ATCC 23270 RepID=B7JB43_ACIF2 Length = 1057 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 88/298 (29%), Positives = 146/298 (48%), Gaps = 16/298 (5%) Query: 41 LTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDE-----NCFFSDEVPDR- 94 + + D + R++ + A +M P V S+ RA E + FS DR Sbjct: 462 VVRPDAQGRVRVLAGAGPGIEMMQPFQIHVDDPSSMSARAWREQRTIVHSDFSSSQADRP 521 Query: 95 WGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYI 154 WG +A G + L+TP+ DG+ + + S+E+ + + A L+ + Sbjct: 522 WGQVLATS--GWVSALATPV-WRDGTPFAVIKFISTEQV-FDADTTTACERLASLLGHSL 577 Query: 155 QKEALVEQLR--EANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFID 212 + L E LR + A IA+ TD LTGLPNRR + + + A N + + +D Sbjct: 578 DEHDLKEHLRLLQEQEAKIAR--TDLLTGLPNRRFLEIQMEQAIARAERHNQLLAVCMLD 635 Query: 213 LDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISS 271 LD FK +ND +GH +GD L+ +G+RL+ + + + RLGGDEF+++ + E+ D+++ Sbjct: 636 LDGFKPVNDTYGHGAGDEVLVALGKRLSEALRKSDFVARLGGDEFVLLVEDLEDLDDLAN 695 Query: 272 LRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTD-ADSALHAADIAMYQEKKHK 328 + ++I+ I L + GAS+G+ TD D L AD AMY+ K +K Sbjct: 696 IMKKIEDTITAPIPLSNGKSVQIGASMGVALYPFGDTDTGDKLLRLADQAMYESKANK 753 >UniRef50_C9NPS7 Intracellular signaling protein (PAS,GAF,GGDEF domains) n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NPS7_9VIBR Length = 471 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 11/232 (4%) Query: 98 CIAARNLGITTFLSTPIHLPDGSFYGTLCAAS-SEKRQWSERAEQVLQLFAGLIAQYIQK 156 C AA G+ +L PI + DG YGTL +S + R + + +++++LFA I + + Sbjct: 230 CFAA--FGLEAYLGAPIFV-DGERYGTLNFSSPTSTRPFRPQDKELVRLFAEWIGHELAR 286 Query: 157 EALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNF 216 + ++ L+ A L + TD LTGL NRR I L L +++A D D+F Sbjct: 287 QQDLDALKHARNQLEVLASTDPLTGLANRRYIESTLDKQLDLHHRYGLPLVVALFDFDHF 346 Query: 217 KLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERI 276 K +ND+FGH GD L + G + TL + +V R GG+EFL + N A +L ERI Sbjct: 347 KRVNDQFGHQMGDEALQRFGAIVATLTRKEDVYARWGGEEFLALLPNTSLAGALTLIERI 406 Query: 277 QQQIRG---EYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 ++ EY+ + L S+G+ V E +A S L AD +Y+ K Sbjct: 407 THSVKAQPLEYNGAPIAL---SVSVGVTAVH-EQDNASSVLKRADALLYRAK 454 >UniRef50_Q46T37 PAS:GGDEF n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46T37_RALEJ Length = 707 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 67/199 (33%), Positives = 102/199 (51%), Gaps = 2/199 (1%) Query: 132 KRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFEN 191 +R+W E ++ G + + + ++A+ + ++ D+LTGLPNRR + Sbjct: 354 QRRWLETHATPMRGADGCVTRLLAVTRDTTDRKQASDRIQHLAHYDALTGLPNRRLVENR 413 Query: 192 LTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGR 251 FS A H + I F+DLD FK IND GH++GD LI++ RL L G+V+ R Sbjct: 414 ARQAFSQASD-GHTLAIMFLDLDLFKDINDTLGHSAGDASLIELARRLRPLLSEGDVLAR 472 Query: 252 LGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDAD 311 GGDEFL++ + + +++ I YHLG DL G S+GI + TD + Sbjct: 473 FGGDEFLILLPDACERTAAQTAQKVLDTIAEPYHLGPYDLTVSG-SIGIALYPRDGTDFE 531 Query: 312 SALHAADIAMYQEKKHKQK 330 S AD AMY KK ++ Sbjct: 532 SLSKNADTAMYHVKKQGRR 550 >UniRef50_Q486Y3 GGDEF/GAF/EAL domain protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q486Y3_COLP3 Length = 781 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 78/251 (31%), Positives = 132/251 (52%), Gaps = 20/251 (7%) Query: 86 FFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQ--VL 143 FF + + D + G+ + S P+ + G G L AAS+ K +ERA+Q V+ Sbjct: 275 FFENLAVTNFTDHLILSKNGLCSGWSVPVRV-KGEIVGLLNAASNVK--INERAQQLGVI 331 Query: 144 QLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLN 203 ++ +G++ + + L EQL Q+ D+LTGLPNR + + + + Sbjct: 332 KMLSGIMGVTLSRVNLQEQLEH-------QACYDTLTGLPNRHQFNQRMELAITQDNPIP 384 Query: 204 HKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN 263 ++ FIDLD FK++ND GH+ GD L +V +R+N + + R GGDEF+V+ LN Sbjct: 385 FTLL--FIDLDRFKVVNDTMGHDVGDELLCRVTQRINQQIRKEDFAARHGGDEFVVLLLN 442 Query: 264 NEN---ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIA 320 ++ ADI+S RI + ++ + + + ++ GAS+GI + +++ L ADIA Sbjct: 443 KQSKAIADITS--ARIIKALKEPFQIDEHSIFI-GASIGISYFPEHSKNSEELLKYADIA 499 Query: 321 MYQEKKHKQKT 331 MY KK + + Sbjct: 500 MYHAKKQGKSS 510 >UniRef50_A4C531 Sensory box protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C531_9GAMM Length = 725 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 90/321 (28%), Positives = 145/321 (45%), Gaps = 23/321 (7%) Query: 24 RQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDE 83 +QL+ + V D+ L++ ++ Q A S I WD+ + + Sbjct: 137 QQLIAFIGCVEDVTELCLSQQQLKDNQQRYELALKSSGAGI-------WDWDILNDVVHY 189 Query: 84 NCFFSDEVP----------DRWGDCIAARNLGI-TTFLSTPIHLPDGSFYGTLCAASSEK 132 + FSD + W D I +L I T L + D F C S+K Sbjct: 190 SAKFSDLLGFDNLLFGTSWSSWTDQIHPDDLDIFETQLQNHLDDADKPF-NIECRLISQK 248 Query: 133 RQ--WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFE 190 ++ W + L+ G + + + ++ + Q+ D LTGLPNR E Sbjct: 249 KKVLWFTVVGEALRDEHGYPTRMVGSMVDITLKHQSQQMIWQQANFDHLTGLPNRNMFTE 308 Query: 191 NLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIG 250 L S ++ K + FIDLD+FK +ND GH +GD LI+V ERL + + + IG Sbjct: 309 RLKQEISESKRYQQKFALFFIDLDHFKEVNDTLGHGAGDQLLIEVAERLQLILRESDTIG 368 Query: 251 RLGGDEFL-VVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTD 309 R+GGDEF ++ N+ DI SL +++ Q I +++ D + + AS+GI + Sbjct: 369 RIGGDEFTALIPHINQTCDIDSLAQKLIQTIELPFYI-DGESIFISASIGITLFPDHSEK 427 Query: 310 ADSALHAADIAMYQEKKHKQK 330 D L AD AMY+ K++ +K Sbjct: 428 IDELLKFADQAMYRSKENGRK 448 >UniRef50_Q31NI4 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Synechococcus elongatus RepID=Q31NI4_SYNE7 Length = 929 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 61/152 (40%), Positives = 88/152 (57%), Gaps = 4/152 (2%) Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 D LTGLPNR + + L +A H + I FIDLD FKLIND GH SGDL L++V Sbjct: 501 DVLTGLPNRAVLEDRLRQGCKMALRQKHSLAILFIDLDGFKLINDSIGHRSGDLLLVEVA 560 Query: 237 ERLNTLQQNGEVIGRLGGDEF--LVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYP 294 +R+ + G+ + R+GGDEF L+V L EN D+ S+ +R+ + YH+ + L+ Sbjct: 561 QRMCEQVRAGDTVARIGGDEFIILLVDLKLEN-DVISIADRLLASVARPYHIQGIYLHVT 619 Query: 295 GASLGIVEVDPETTDADSALHAADIAMYQEKK 326 AS+GI D + + AD+AMY+ K+ Sbjct: 620 -ASMGITLSDGDIEQPTQLIQQADLAMYKAKQ 650 >UniRef50_B1KCF3 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Burkholderia cenocepacia MC0-3 RepID=B1KCF3_BURCC Length = 935 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 85/329 (25%), Positives = 155/329 (47%), Gaps = 25/329 (7%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIM-------FARNSQ 60 +V ++A+E+ L ++ + E + + + ++D + +L + +AR Sbjct: 342 KVLGAMAREEPLANVTTLVCHEAERIAPAVTASIRRIDDDGKLWTLAAPSLPMEYARAID 401 Query: 61 KMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRW--GDCIAARNLGITTFLSTPIHLPD 118 + I +F + + F PD A + G T+ PI D Sbjct: 402 GLRIAPDFV----ERIAAGPFGRHIAFPTTSPDEAYASHSALAISFGFTSCWWHPIRSTD 457 Query: 119 GSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDS 178 G GTL E Q S ++++ L A +++E E++R ++ D Sbjct: 458 GRTLGTLSFYYRESHQPSALHQELVDASLNLCALALEREGSKERIRRL-------AFYDG 510 Query: 179 LTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGER 238 LTGLPNR+ + ++ + A H + F+DL++FK +ND GH +GD L +V +R Sbjct: 511 LTGLPNRQLLMSQAESVLAAAVASQHSFAVMFVDLNSFKQVNDTLGHAAGDGLLSEVAQR 570 Query: 239 LNTLQQNGEVIGRLGGDEFLVVSLNNENADIS-SLRERIQQQIRGEYHLGDVDLYYPGAS 297 L ++ +++GRL GDEF++V L+ + +++ ER ++R + D +L P AS Sbjct: 571 LKIDLRDTDIVGRLSGDEFVIV-LSPADIELTLDFAERTMNRLRQPVQISDTNL-RPAAS 628 Query: 298 LGIVEVDPETTDADSAL-HAADIAMYQEK 325 +GI + P+ ++ AL AD+AMY+ K Sbjct: 629 MGIA-IFPQHGESIGALMQHADMAMYEAK 656 >UniRef50_C7RK65 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RK65_9PROT Length = 1327 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 65/185 (35%), Positives = 101/185 (54%), Gaps = 2/185 (1%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 G +A Y+ + + +LR A+ L Q++ D LTGLPNR + + L A + Sbjct: 876 GKVAHYVGVFSDITELRRAHDQLDHQAHHDPLTGLPNRLLLGDRLHKALQRAHRDETGLA 935 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NEN 266 + FIDLD FK IND GH GD L +V RL L + + +GRLGGDEFL+V + E Sbjct: 936 VFFIDLDRFKNINDTLGHQVGDRVLCEVAWRLGRLMRESDTVGRLGGDEFLIVIEDVGEP 995 Query: 267 ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 +S + E+I ++ + + ++ GAS+GI + DA++ + AD+AMY+ K+ Sbjct: 996 TAVSHIAEKILNVLQASPVTVEHE-FFVGASIGISVFPQDGADAETLMKNADVAMYRAKE 1054 Query: 327 HKQKT 331 + T Sbjct: 1055 RGRNT 1059 >UniRef50_C6WYR4 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WYR4_METML Length = 681 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 102/322 (31%), Positives = 145/322 (45%), Gaps = 37/322 (11%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 I R L QS E+ VR L E V D+ L +D+E R A++ Q P Sbjct: 119 IERKRAELELRQS-EAKVRALYEA---VPDL----LLFLDLEGRFLECKPAKDFQTHIEP 170 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 E+F + I E E GIT+F + LP G Sbjct: 171 EHFLGKTIHEALPEGIAEQAMLCLEK--------VVVGSGITSF-EYQMALPQG------ 215 Query: 126 CAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNR 185 ++ E R EQVL I + I + +Q L ++ D+LTGLPNR Sbjct: 216 -VSNYESRFIRASEEQVL-----CIVRDISESKRTQQ------QLHFLAHYDTLTGLPNR 263 Query: 186 RAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQN 245 E+L + A + I + FIDLD FK IND GH GD L QVG R++ + Sbjct: 264 LLFNESLHQAQTHANRTSDTIAVMFIDLDRFKNINDTLGHGIGDKLLQQVGNRISLCIRE 323 Query: 246 GEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVD 304 + + R+GGDEF VV +N E +D + + E+I +R + +G+ +++ GAS+GI Sbjct: 324 SDTVARMGGDEFAVVLVNVREESDAAVVAEKIIDALRLPFMVGEHEVFV-GASIGITFYR 382 Query: 305 PETTDADSALHAADIAMYQEKK 326 P D D L AD+AMY K+ Sbjct: 383 PGQDDRDVLLEKADVAMYHAKE 404 >UniRef50_D2PTB3 Diguanylate cyclase with PAS/PAC and GAF sensors n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PTB3_9ACTO Length = 480 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 57/154 (37%), Positives = 88/154 (57%), Gaps = 3/154 (1%) Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 D+LTGL NRR + + +R + ++ F DL++FK +ND++GH +GDL L ++G Sbjct: 330 DALTGLANRRLLQHRFNAVLQRSRQSGRRGVLLFCDLNHFKQVNDKYGHEAGDLALREIG 389 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGA 296 RL + G+ + RLGGDEF V++ + D+++L RI+ I DV + A Sbjct: 390 TRLQAAVRQGDTVARLGGDEFAVLAEEIDGTDLTALVRRIEDSINRPLTGIDVPVT---A 446 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQK 330 SLG V P T D + L AD AMY+ K+H ++ Sbjct: 447 SLGTAVVSPYTADLEELLRTADHAMYEAKQHSRR 480 >UniRef50_D1VD15 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Frankia sp. EuI1c RepID=D1VD15_9ACTO Length = 861 Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 62/157 (39%), Positives = 92/157 (58%), Gaps = 9/157 (5%) Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 S D LTGLPNR A+ + L A+ H+ + FIDLD FK +ND FGH +GD L Sbjct: 415 SLHDPLTGLPNRGALLDRLRRSLRRAQRDGHRTGVLFIDLDGFKAVNDTFGHQAGDELLK 474 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLY 292 +G+RL + + G+V+ RLGGDEF ++ + D+ ++ ER+ ++ V+L+ Sbjct: 475 VIGDRLRRVIRPGDVVSRLGGDEFAMLCEGVDGLDDLRAIGERVMHEL-----APPVELH 529 Query: 293 YP---GASLGIVEVDPETTDADSALHAADIAMYQEKK 326 P G S+G+ P+ TDA+ L AAD+AMYQ K+ Sbjct: 530 RPVSVGGSVGLALSGPDLTDAEQLLDAADVAMYQAKQ 566 >UniRef50_C6WW34 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WW34_METML Length = 623 Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 72/197 (36%), Positives = 108/197 (54%), Gaps = 13/197 (6%) Query: 152 QYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLT-TLFSLARHLNHKIMIAF 210 Q++Q++ + + +EA + +Y D LT LPNR + + L TL ARH NH ++ F Sbjct: 165 QFLQQD--IARRKEAEDKIQHLAYYDLLTNLPNRLLLIDRLQHTLAMSARHQNHGALL-F 221 Query: 211 IDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADIS 270 IDLD+FK +ND GH+ GDL L++V +RL T + G+ + RLGGDEF+V+ L + + D S Sbjct: 222 IDLDHFKTLNDTKGHSVGDLLLVEVAKRLQTCMREGDTLARLGGDEFVVI-LQDLSEDSS 280 Query: 271 -------SLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQ 323 ++ +I I Y+L D LY+ S+G+ + D L ADIAMYQ Sbjct: 281 QAAVQAETVCAKIISAINLPYYL-DSYLYHSSTSVGVCLFRNQEFTVDELLKRADIAMYQ 339 Query: 324 EKKHKQKTPFVAHPALH 340 K + T P + Sbjct: 340 AKSAGRNTQRFYDPTMQ 356 >UniRef50_B1XYS1 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XYS1_LEPCP Length = 784 Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 109/223 (48%), Gaps = 8/223 (3%) Query: 104 LGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQL 163 LG+ S+PI +G T E R EQ++++ L +++E Sbjct: 268 LGLRACWSSPIKNGEGRVLATFAFYFREPRAPHGLHEQLVEMSVHLCTLALERE------ 321 Query: 164 REANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRF 223 ++A + +Y D LTGLPNR + NL + A+ + + FIDLD FK +ND Sbjct: 322 -RSHAHIHQLAYYDGLTGLPNRALLQANLARAITQAQQDGTTLALLFIDLDRFKDVNDSH 380 Query: 224 GHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGE 283 GH GD L +V +RL ++ ++ RL GDEF+VV + ER+QQ + Sbjct: 381 GHAVGDELLREVAQRLAGEVRDRSLVCRLAGDEFVVVLPHCGVEQARHTAERVQQALARP 440 Query: 284 YHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 +GD+DL GA LG+ + +D D L AD AMYQ KK Sbjct: 441 ITVGDLDLTT-GACLGVAMYPDDGSDLDRLLRHADAAMYQAKK 482 >UniRef50_A1TVU9 Diguanylate cyclase n=2 Tax=Acidovorax RepID=A1TVU9_ACIAC Length = 496 Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 112/233 (48%), Gaps = 12/233 (5%) Query: 95 WGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYI 154 W + +AAR G T S P+ DG G+ L+ A L A + Sbjct: 250 WREPLAAR--GFTVCWSAPVLDRDGHLLGSFTLHGRRALGCDGLPRHALEAGARLSALLL 307 Query: 155 QKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLD 214 ++E + R +Y D++TGLPNR + E L AR H + IAFIDLD Sbjct: 308 ERERAQQSFRR-------LAYQDAVTGLPNRAFLLEATERLIREARREGHSLAIAFIDLD 360 Query: 215 NFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEF-LVVSLNNENADISSLR 273 FK +ND+ GH +GD L +V +RL + +++ R+GGDEF V+ ++ R Sbjct: 361 RFKQVNDQLGHRAGDDLLREVAQRLQGASRRADIVARIGGDEFAAVLPRCGSREAAAAAR 420 Query: 274 ERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 ++ +R G + GAS+GI + + T+A + LH AD+AMY K+ Sbjct: 421 RLLEAAVRPVMLHGRC--WSLGASIGIAQYPRDGTNAATLLHHADLAMYAAKR 471 >UniRef50_Q087W4 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q087W4_SHEFN Length = 1144 Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 64/196 (32%), Positives = 102/196 (52%), Gaps = 3/196 (1%) Query: 147 AGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKI 206 AG+ Y+ + V Q ++ ++ Q++ DSLTGLPNR + L+ + A + + Sbjct: 678 AGVTKHYLALKQDVTQYKQQEEKILHQAHYDSLTGLPNRLLSLDRLSQMLKDAHRAKNNV 737 Query: 207 MIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NE 265 + F+DLD+FK +ND GH+ GD LIQ RL + +V+GRLGGDEF+++ N NE Sbjct: 738 AVLFLDLDDFKKVNDTMGHSVGDELLIQAAVRLKNTIRESDVVGRLGGDEFIIILSNINE 797 Query: 266 NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 ++ + ++ +Q + L + +L S+GI ++ D L AD AMY K Sbjct: 798 PIEVEIIASKLLEQFYQPFRLENREL-VSTISIGIALYPLDSEDPKELLRQADSAMYHSK 856 Query: 326 KHKQKT-PFVAHPALH 340 + T F H H Sbjct: 857 DRGRNTYNFYTHQMNH 872 >UniRef50_C7RN47 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RN47_9PROT Length = 1542 Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 96/182 (52%), Gaps = 1/182 (0%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 G + Y+ + + ++RE+ + + D LTGLPNR + L + A + Sbjct: 1083 GKVVNYVGMFSDITKVRESQQRIEYLATHDELTGLPNRALFNDRLNLALAHAERSRESVG 1142 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA 267 + FIDLDNFK++ND GH +GD L Q RL + + + RLGGDEF+V+ +N + Sbjct: 1143 VVFIDLDNFKVVNDTLGHETGDKLLKQAAMRLLECVRAEDTVARLGGDEFVVLLVNADRQ 1202 Query: 268 DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKH 327 + ER+ + YH G+ + + AS+G+ + +DA+S + AD AMY+ K H Sbjct: 1203 QATLTAERLLTGLSTSYHFGEHECFI-SASIGLSMFPEDASDANSLMRNADSAMYRAKDH 1261 Query: 328 KQ 329 + Sbjct: 1262 GK 1263 >UniRef50_C9NSC0 GGDEF domain-like protein n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NSC0_9VIBR Length = 323 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 82/310 (26%), Positives = 143/310 (46%), Gaps = 24/310 (7%) Query: 24 RQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDE 83 ++L++M+ ++ D + ++T+ ++ ++ + + Y P ++ C + + Sbjct: 23 QKLVDMIALLFDAPAAFVTQATTNG-IEVLVASEQAPSQYCPGAYSDKNTNVYCHQVVQS 81 Query: 84 N--CFFSDEVPD-RWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAE 140 N + +D D +W D +++L PI PDG+ +GTLC +S++ Sbjct: 82 NQMMYVADASEDEKWSDNPEYTEDQFSSYLGYPIQWPDGNSFGTLCVMDQRPTDYSDKLM 141 Query: 141 QVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLAR 200 VL I + + L +AN L +S D LT NRR E+ SL+ Sbjct: 142 TVLSFLRDTI------NSDLAYLYKANQ-LKVESRFDELTKALNRRGFTESFERHISLSN 194 Query: 201 HLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVV 260 N M+ ++D+D FK IND++GH+ GD L L + +++ R GGDEF+V+ Sbjct: 195 SFNRSSMLMYLDIDGFKAINDQWGHSVGDQILKDFATALLKSVRKSDLVARWGGDEFVVL 254 Query: 261 SLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV----DP-ETTDADSALH 315 + + D S ER+ + ++ + P S+G VE+ DP + TD L Sbjct: 255 LDSEQEVDKSRFVERLDESLKTS-----CQEHIPQYSIGSVELASGTDPSKLTD---FLC 306 Query: 316 AADIAMYQEK 325 AD AMY K Sbjct: 307 KADAAMYDNK 316 >UniRef50_D2YKV5 GGDEF family protein n=2 Tax=Vibrio mimicus RepID=D2YKV5_VIBMI Length = 411 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 110/208 (52%), Gaps = 11/208 (5%) Query: 134 QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLT 193 Q SER ++++L L + I++ +QL +AN L A S TDSLTGLPNRR L Sbjct: 209 QVSERNRELVKLNQSLEEKVIER---TKQLYQANRQLEALSLTDSLTGLPNRRKAMHQLA 265 Query: 194 TLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLG 253 ++LAR + ID+D FK +ND +GH+ GD L + L +N +++ RLG Sbjct: 266 LHWNLAREQKKPFVCVMIDVDGFKEVNDSYGHDIGDKVLTIIAHALKDHFRNDDLVCRLG 325 Query: 254 GDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDV---DLYYPGA-SLGIVEVDPETTD 309 GDEFL + N + +S + I + + E L ++ +++ G+ S+G+ E DP D Sbjct: 326 GDEFLAICPNTDA--VSGV--HIAEHVCDEVELLEIPVEGIHWQGSVSMGVAEFDPNMKD 381 Query: 310 ADSALHAADIAMYQEKKHKQKTPFVAHP 337 L AAD A+Y K + + +P Sbjct: 382 HHELLRAADQAVYLAKNNGKNRVCAFNP 409 >UniRef50_C6HXY9 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HXY9_9BACT Length = 1594 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 101/186 (54%), Gaps = 5/186 (2%) Query: 147 AGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKI 206 +G + +++ + V ++ E + L +S D LTGLPNRRA+ F ++ + Sbjct: 1019 SGRLVEFVGVQRDVTEIVEVSQRLEHESLHDRLTGLPNRRALDRAFAMAFERSQRYRINL 1078 Query: 207 MIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN 266 + IDLD FK +NDRF H +GD L+ +GER+ + + + + RLGGDEF+++ N Sbjct: 1079 AVVMIDLDGFKPVNDRFDHEAGDRLLMAIGERVGRVLRKTDFLARLGGDEFVLLVENYAG 1138 Query: 267 AD--ISSLRERIQQQIRGEYHLGDVDLYYPGASLGI--VEVDPETTDADSALHAADIAMY 322 + + LR R+ + I E+ L + G S+G+ E +PE D+ L AD A+Y Sbjct: 1139 TEELLEVLR-RVAEAIGREFLLPGGEGVQVGVSMGVATTEGEPEAESPDALLRLADQALY 1197 Query: 323 QEKKHK 328 + K HK Sbjct: 1198 ESKAHK 1203 >UniRef50_Q0RMV7 Putative sensor protein n=3 Tax=Frankia alni RepID=Q0RMV7_FRAAA Length = 570 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/156 (37%), Positives = 89/156 (57%), Gaps = 2/156 (1%) Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 +S D LTGLPNR A+ + L A H ++ + F+DLD FK +ND GH +GD L Sbjct: 374 RSLHDGLTGLPNRTALLDRLHRALHRAGHDGRRVGVLFVDLDGFKAVNDTLGHQAGDDLL 433 Query: 233 IQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDL 291 RL+ + G+V GRL GDEF V+ + + AD+ ++ +R+ + L D + Sbjct: 434 RTTAARLSHAVRPGDVAGRLAGDEFAVLCEDVDGVADLEAIADRVVTALAAPVRLLDRPV 493 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKH 327 G S+G+ +P+ DA++ L+AADIAMY K++ Sbjct: 494 TLTG-SVGLALSNPDLADAETLLNAADIAMYTAKRN 528 >UniRef50_B4S2A8 Intracellular signaling protein (GAF,GGDEF,EAL domains) n=3 Tax=Alteromonadales RepID=B4S2A8_ALTMD Length = 866 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 65/168 (38%), Positives = 94/168 (55%), Gaps = 3/168 (1%) Query: 160 VEQLREANAALIAQSYTDSLTGLPNRRAIFENLT-TLFSLARHLNHKIMIAFIDLDNFKL 218 +E+ +E LI ++ DSLT LPNR L + S R+ + + FIDLD FK+ Sbjct: 429 IEERKEIELKLIHDAHHDSLTDLPNRAMFTSRLELAIASKQRYSENMFAVLFIDLDRFKV 488 Query: 219 INDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQ 277 IND GH++GD FLI+V R+ + +++ RLGGDEF+V+ N E+ D+ + RI Sbjct: 489 INDTLGHHAGDEFLIEVARRIALCIRGHDLLARLGGDEFVVLLDNFEDEDDVEEVASRII 548 Query: 278 QQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 I + L ++ Y GAS+GI ++ AD L AD AMYQ K Sbjct: 549 SSISEPFLLDGREM-YSGASVGIAHIETYYRSADEVLRDADAAMYQAK 595 >UniRef50_A5ETK5 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=7 Tax=Bradyrhizobiaceae RepID=A5ETK5_BRASB Length = 892 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/227 (33%), Positives = 111/227 (48%), Gaps = 9/227 (3%) Query: 105 GITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLR 164 G+ STPI DG GT E R S EQ+ +A +Q AL + + Sbjct: 367 GLRACWSTPIQGKDGRVIGTFAFYFRECRGPSPWHEQI-------VAACVQLGALAIERQ 419 Query: 165 EANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFG 224 E + + +Y D LTGLPNR I + + +H + IAF+D DNFK +ND G Sbjct: 420 EVRSTISQVAYHDMLTGLPNRARIPSMIAEAINACPEGSH-LAIAFLDADNFKDVNDTLG 478 Query: 225 HNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEY 284 H +GD FL+ RL + G+++GRLGGDEF++V N + + S RI + Sbjct: 479 HAAGDEFLVAFANRLRAQIRPGDMLGRLGGDEFVIVLQNRDALEASLAAARITAALAMPL 538 Query: 285 HLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKT 331 +G + AS+G+ TD ++ + AD AMY+ K+ + T Sbjct: 539 TIGKRQVPM-SASMGLSLYPDNATDIETLIKQADGAMYKAKRAGRAT 584 >UniRef50_Q1K038 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K038_DESAC Length = 388 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 72/212 (33%), Positives = 106/212 (50%), Gaps = 15/212 (7%) Query: 132 KRQWSERAEQVLQLFAGLIAQ---YIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAI 188 +RQ R + V Q F+G +I E + E A + +Y D+LTGLPNRR Sbjct: 178 RRQCWIRVDAVPQFFSGRNRPDEVFISIEDITE-FHRAQKKIEQLAYYDALTGLPNRRLF 236 Query: 189 FENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEV 248 + + A N + + FIDLD FK +NDRFGH+ GD +L +V RL + + + Sbjct: 237 MDRINQTVKRAERDNDHLALLFIDLDKFKSVNDRFGHSGGDDYLCEVATRLESAVRKSDT 296 Query: 249 IGRLGGDEFLVVSLNNENAD-----ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 + RL GDEF+V+ N + L E++Q + + H DV + AS+GI Sbjct: 297 VARLSGDEFVVLLSTVHNGNDGELMAKKLFEQLQPTVEIDGH--DVSI---NASIGIACY 351 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVA 335 + T A+ L AD AMY+ KH+ K F + Sbjct: 352 PQDATTAEGLLQCADTAMYR-AKHQGKNNFCS 382 >UniRef50_B3EBJ5 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Proteobacteria RepID=B3EBJ5_GEOLS Length = 965 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 118/231 (51%), Gaps = 16/231 (6%) Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS--- 174 D S+Y + + E ++W A + Q Q EA++ R+ A+S Sbjct: 471 DTSYYREYLSPTREGKRWIGWA------LRCIFNQSGQAEAIIGMGRDITDRKTAESTIE 524 Query: 175 ---YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLF 231 Y D +TGLPNR + + L + A + + I F+DLD FK IND GH GD Sbjct: 525 QLAYHDPVTGLPNRTLLHDRLQLAINRAERDSQGVAILFLDLDRFKAINDSLGHAMGDQL 584 Query: 232 LIQVGERLNTLQQNGEVIGRLGGDEFLVV--SLNNENADISSLRERIQQQIRGEYHLGDV 289 L VG RL ++ + + RLGGDEF+V+ +L+N++A + S+ +I +Q+ Y + D Sbjct: 585 LRLVGNRLLDCVRSSDTVARLGGDEFVVLISALDNDHA-VGSVVMKILEQLCEPYQIDDH 643 Query: 290 DLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 ++Y +S+GI + DA+ L AD+AMYQ K+ + T P L+ Sbjct: 644 EVYT-SSSIGISLFPRDGRDAEELLKNADMAMYQAKEAGRNTCHFFSPELN 693 >UniRef50_B9ZPK3 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZPK3_9GAMM Length = 842 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 62/162 (38%), Positives = 88/162 (54%), Gaps = 5/162 (3%) Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 Q+ DSLTGLPNR + + L + A H+I + +DLD+FK+IND FGH+ GD L Sbjct: 413 QATHDSLTGLPNRWLLHDRLAQSIAHASRHEHRIAVMLLDLDHFKMINDTFGHHEGDELL 472 Query: 233 IQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQ---QIRGEYHLGDV 289 +V +RL IGR GGDEF++ L E D + ER Q+ Q +H G Sbjct: 473 REVAQRLKDAAGTDATIGRFGGDEFMI--LLPEITDELQVGERGQEILAQFDRPFHTGPT 530 Query: 290 DLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKT 331 + ASLGI + DA++ + AD+AMY+ K+ + T Sbjct: 531 RQFSSSASLGIALFPQDARDANTLVRYADMAMYEAKRSGRNT 572 >UniRef50_C1D205 Putative diguanylate-cyclase n=1 Tax=Deinococcus deserti VCD115 RepID=C1D205_DEIDV Length = 597 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 110/219 (50%), Gaps = 9/219 (4%) Query: 109 FLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANA 168 + P+ PDG GT+C + R ++ E +LQ FA L+ ++ ++QL + Sbjct: 109 YAGAPLRTPDGHHLGTVCVMDAVPRSFTLEEEGILQDFAALVMDELRLHITLQQL--GDL 166 Query: 169 ALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSG 228 AL+ D+LT LPNR + LT A + K+++ +DLD FKLIND GH +G Sbjct: 167 ALL-----DTLTSLPNRTNFRQRLTQAMRRATLDSSKVVLGLMDLDRFKLINDTLGHAAG 221 Query: 229 DLFLIQVGERLNTLQQNGEVIGRLGGDEF-LVVSLNNENADISSLRERIQQQIRGEYHLG 287 D L +RL+ + + + R+GGDEF L+ S A + RI++ + L Sbjct: 222 DELLCLTAKRLSECLASSDTVARMGGDEFALIFSDVAVPAGTERILARIREAFSTPFVLE 281 Query: 288 DVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 D ++Y SLG+ + ++ L AD AMY+ K+ Sbjct: 282 DQEIYV-HWSLGLTIFPDDADQVETLLTQADTAMYRAKR 319 >UniRef50_B6BK04 Diguanylate cyclase/phosphodiesterase n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BK04_9PROT Length = 760 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 64/175 (36%), Positives = 92/175 (52%), Gaps = 4/175 (2%) Query: 167 NAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHN 226 N LI Q D+LTGLPNR ++EN+ + R + H + +IDLDNFK IND+FGH Sbjct: 332 NRELIYQVQHDTLTGLPNRTYMYENIKKYKTKHREIYH---VLYIDLDNFKNINDKFGHT 388 Query: 227 SGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHL 286 GD L++V RLN+ +++ R GGDEF+V+ + I E + I YH+ Sbjct: 389 VGDKILVEVAHRLNSFFDEEDMLIRQGGDEFIVLRECIDETKIEENLETLITLISKVYHV 448 Query: 287 GDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 D + GAS+GI + + + L AD AMY+ KK K + H+ Sbjct: 449 -DSKEFRIGASVGIAQYPVDALTIEELLSLADTAMYEAKKRKNSYCLFSEKMRHN 502 >UniRef50_A5VC79 Diguanylate cyclase n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VC79_SPHWW Length = 408 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 68/192 (35%), Positives = 99/192 (51%), Gaps = 9/192 (4%) Query: 144 QLFAGLIAQYIQKEALVEQL--REA-NAALIAQSYTDSLTGLPNRRAIFENLTTLFSLAR 200 Q F L + + K+ L+E++ REA L + TD LTGL NRR E T F AR Sbjct: 198 QQFEALSEERLSKQRLMEEVARREALETRLRIMADTDELTGLANRRCFLERARTAFGTAR 257 Query: 201 HLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVV 260 + ID+DNFK IND +GH+ GD L +V + G+ +GR GG+EF+ Sbjct: 258 SRERPFSLCMIDVDNFKAINDGWGHDCGDAVLREVAAACLRTFREGDAVGRFGGEEFVAA 317 Query: 261 SLNNENADISSLRERIQQQIRG---EYHLGDVDLYYPGASLGIVEVDPETTDADSALHAA 317 + AD + ER+++ I G E L D+ + ++G+ EV+P T AL A Sbjct: 318 LPGADMADARRIAERLRETIAGLRLEAPLADLRVT---VTIGLAEVEPLETSLAPALKRA 374 Query: 318 DIAMYQEKKHKQ 329 D A+YQ K+ + Sbjct: 375 DAALYQGKRSGR 386 >UniRef50_A1TZQ7 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=5 Tax=Gammaproteobacteria RepID=A1TZQ7_MARAV Length = 819 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/166 (37%), Positives = 93/166 (56%), Gaps = 5/166 (3%) Query: 170 LIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGD 229 L+ Q+ D LTGLPNR + L + AR K+ + F+DLDNFK IND GH++GD Sbjct: 384 LLRQANYDILTGLPNRMLALDRLKLALAQARRDESKVGVMFLDLDNFKHINDTLGHDAGD 443 Query: 230 LFLIQVGERLNTLQQNGEVIGRLGGDEFLVV--SLNNENADISSLRERIQQQIRGEYHLG 287 LI+ R+++ + + RLGGDEFLVV LN +A S + ERI + + L Sbjct: 444 TLLIEAARRISSCLRGTSTVARLGGDEFLVVLPGLNGPDAS-SQVAERILKTFAPPFMLS 502 Query: 288 DVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPF 333 +++ S+GI ++ ++ + L AD AMY E KHK K+ + Sbjct: 503 GQEVFV-TTSIGIATFPDDSDNSGTLLQHADAAMY-EAKHKGKSAY 546 >UniRef50_C7I0S2 Diguanylate cyclase/phosphodiesterase with GAF sensor n=1 Tax=Thiomonas intermedia K12 RepID=C7I0S2_THIIN Length = 1494 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 58/153 (37%), Positives = 87/153 (56%), Gaps = 1/153 (0%) Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 D+LTGLPNR A+ +L + AR + +++ +DLD+FK +ND GH +GD L Q+G Sbjct: 697 DALTGLPNRLALEHHLPLAMARARRHKNLLVVGVMDLDDFKPVNDTHGHAAGDQLLRQLG 756 Query: 237 ERLNTLQQNGEVIGRLGGDEF-LVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPG 295 ERL + +++ RLGGDEF LV+ + +D+ + +RI + + LGD L G Sbjct: 757 ERLRAAVRESDLVARLGGDEFVLVLEGVAQASDLPIVLDRIHGAVETPFDLGDGVLAKVG 816 Query: 296 ASLGIVEVDPETTDADSALHAADIAMYQEKKHK 328 SLG+ + A+ L AD A+Y K HK Sbjct: 817 MSLGVTLYPADEAQAEVLLRHADAALYASKAHK 849 >UniRef50_C5V5K2 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V5K2_9PROT Length = 925 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 105/209 (50%), Gaps = 16/209 (7%) Query: 131 EKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNR 185 +KR+ E ++L ++A G++ Y+ + + + A +I+ ++ D+LTGLPNR Sbjct: 440 DKRKNGEIYPKLLNIYAVKSKNGVVTHYVGSYTDLTERKMAEEKIISLAFYDTLTGLPNR 499 Query: 186 RAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQN 245 R + + L + + FIDLD FK +ND GH+ GDL L QV RL + Sbjct: 500 RLLLDRLNYALASGLRTGKNGALLFIDLDKFKTLNDTLGHDIGDLLLKQVAHRLKACVRE 559 Query: 246 GEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDL--------YYPGAS 297 + + R+GGDEF+V+ E+ +I S+ Q ++ GE L + + ++ S Sbjct: 560 IDTVARIGGDEFVVML---EDLNIESVEAAAQTEVIGEKILAALRMPYQLLTNEFHSSVS 616 Query: 298 LGIVEVDPETTDADSALHAADIAMYQEKK 326 +GI D L ADIAMYQ KK Sbjct: 617 IGISLFSNNGQSQDEPLKQADIAMYQAKK 645 >UniRef50_Q5P4W8 Putative uncharacterized protein n=2 Tax=Proteobacteria RepID=Q5P4W8_AZOSE Length = 1039 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/192 (32%), Positives = 103/192 (53%), Gaps = 4/192 (2%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 G IA+Y+ + + + ++ A+ Q+ D LTGL NR + + L + AR K+ Sbjct: 575 GRIAEYVTLFSDITERKQQEVAMWRQANFDPLTGLANRSLLQDRLDRALAHARRHGCKVG 634 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NEN 266 + F+DLD FK IND GH+ GD L+ V RLN+ ++ + + RLGGDEF VV + + Sbjct: 635 LLFLDLDGFKWINDSLGHDVGDELLVDVARRLNSCVRDEDTVARLGGDEFTVVVHDLADR 694 Query: 267 ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 AD+ ++ +++ +R + L + G S+GI + D + L ADIAMY+ K+ Sbjct: 695 ADLGAIADKLVAVLREPFALRGARHHISG-SVGITVFPDDGDDVQTLLRNADIAMYKAKQ 753 Query: 327 --HKQKTPFVAH 336 + P+ H Sbjct: 754 AGKNRAQPYAPH 765 >UniRef50_Q2YCL1 Diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(S) n=2 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2YCL1_NITMU Length = 1054 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 97/173 (56%), Gaps = 8/173 (4%) Query: 160 VEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLI 219 + Q + A ++ + DSLTGLPNRR + + L +++ + FIDLDNFKL+ Sbjct: 605 ITQRKSAENEILHLALYDSLTGLPNRRLLLDRLGHALAVSARNQRMGALLFIDLDNFKLL 664 Query: 220 NDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD-------ISSL 272 ND GH+ GDL L QV RL++ + + + RLGGDEF+V+ + + D IS++ Sbjct: 665 NDTLGHDMGDLLLRQVAPRLSSCVRESDTVARLGGDEFVVILMGDFGEDHDEALTQISTI 724 Query: 273 RERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 ERI+ ++L D +++ S+GI + ++ + L AD+AMYQ K Sbjct: 725 CERIRSAFIQPFNL-DPYIHHITPSIGIALFNDQSQTTNELLKRADLAMYQAK 776 >UniRef50_A6GQ17 Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Limnobacter sp. MED105 RepID=A6GQ17_9BURK Length = 798 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 95/166 (57%), Gaps = 3/166 (1%) Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 Q+ D LTGLPNR A+ + L L + + K+ + FIDLD FK +ND GH+ GD L Sbjct: 360 QATHDPLTGLPNRLALSQTLQELLGNDQVQDFKLGLLFIDLDGFKAVNDTLGHDRGDDLL 419 Query: 233 IQVGERLNTLQQNGEVIGRLGGDEFLVV--SLNNENADISSLRERIQQQIRGEYHLGDVD 290 I V +RL ++ ++ +++ RL GDEF++ + +++ + R+ + + + LG+ Sbjct: 420 IAVSKRLRSVVRSSDIVARLSGDEFVITLPYIADQDTAFNVGRKVVDAVSKKPFELGEKK 479 Query: 291 LYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAH 336 +Y GAS+G+ + TD + L ADIAMYQ K+ + T V H Sbjct: 480 IYV-GASVGVALFPTDATDVEGLLKHADIAMYQAKQAGKNTVRVFH 524 >UniRef50_Q1JZB1 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZB1_DESAC Length = 1092 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 120/259 (46%), Gaps = 3/259 (1%) Query: 75 SLCKRAI-DENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKR 133 S C++ + +E CF+ V + + + + +GI ++ P+ + G L S ++ Sbjct: 553 SPCEKVLRNEVCFYPSGVRELFPQDVDFKQMGIESYFGIPLVNSEQKVVGVLNGFSRQRM 612 Query: 134 QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLT 193 A ++L + A A +++ E L E L ++ D LT LPNR E L Sbjct: 613 HLPPDAREILSIVAARAATELERLKADEALAEHRKQLSYLAFHDPLTQLPNRLRFTEVLE 672 Query: 194 TLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLG 253 A + + FIDLD FK IND GH+ GD L V R +L + +V+ RLG Sbjct: 673 AAVGDAEGHGRYLSLLFIDLDRFKNINDSLGHSIGDKLLQAVARRTGSLIDSADVLARLG 732 Query: 254 GDEFLVVSLNNENADISS-LRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADS 312 GDEF ++ N + + +R+ + + + D L+ AS+GI + + D Sbjct: 733 GDEFAILLFNCVTPVVGADTAQRVIDALSQPFQIDDYSLHV-SASIGITVAPVDAREPDE 791 Query: 313 ALHAADIAMYQEKKHKQKT 331 + ADIAM++ K + T Sbjct: 792 LIKCADIAMFKAKDAGRNT 810 >UniRef50_C3KQH8 Putative uncharacterized protein n=2 Tax=Rhizobium sp. NGR234 RepID=C3KQH8_RHISN Length = 649 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 85/158 (53%), Gaps = 1/158 (0%) Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 DSLT LPNRR+ F L+ + A ++ +A +DLD FK +ND +GH +GD L++VG Sbjct: 223 DSLTHLPNRRSFFARLSAECAAASSNQSRLAVAMLDLDGFKAVNDLYGHPTGDCLLVEVG 282 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGA 296 RL + RLGGDE+ ++ + + AD+ L +RI +++ Y L + + A Sbjct: 283 RRLEQACPGDAFLARLGGDEYAIIVASADEADLLRLGDRICEEVAAPYVLDGISVLI-SA 341 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFV 334 S+G + D AD A+Y+ K++K P + Sbjct: 342 SVGFAVYPDHAAEPDLVFEYADYALYEAKQNKTGRPVL 379 >UniRef50_Q1JY96 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JY96_DESAC Length = 904 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 99/181 (54%), Gaps = 2/181 (1%) Query: 147 AGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKI 206 AG+ + Y+ + +++ + L Q+Y D+LT LPNR+ + L+ + AR K+ Sbjct: 453 AGIPSHYVAIFHDISEIKRSEEKLQHQAYHDALTNLPNRKLFHDRLSVAVAHARQHKTKL 512 Query: 207 MIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN 266 + ++D+DNFK IND GH+ GD L Q+ ERL + + + RLGGDEF+++ E+ Sbjct: 513 AVIYLDIDNFKYINDSLGHHYGDKLLQQISERLLSCTRQEDTTARLGGDEFIILMPEIED 572 Query: 267 A-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 DI+ L RI +Q+ + L D Y S+G+ + + + ADIAMY+ K Sbjct: 573 PHDITVLCRRILKQLELPHALSGRD-YTVNVSMGVTVFPDDADTPEDLIKNADIAMYRAK 631 Query: 326 K 326 + Sbjct: 632 E 632 >UniRef50_D1V8G1 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Frankia sp. EuI1c RepID=D1V8G1_9ACTO Length = 805 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 65/168 (38%), Positives = 92/168 (54%), Gaps = 4/168 (2%) Query: 160 VEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLI 219 V ++R NAA +S D LTGLPNR AI ++L + R + + +IDLD FK + Sbjct: 354 VLRIRMENAARF-RSLHDPLTGLPNRVAILDHLRRSLAQGRPDTRRTGVLYIDLDGFKAV 412 Query: 220 NDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQ 278 ND GH++GD L V RL L + +++GRL GDEF V+ D+ ++ ER+ Sbjct: 413 NDTLGHHAGDELLQAVAGRLRQLGRPTDLVGRLAGDEFAVLCEGVGGLEDLRAIGERVIH 472 Query: 279 QIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 + L L GAS+GI P+ TDA+ L AAD+AMY K+ Sbjct: 473 ALTPPVRL--RRLVSVGASIGIALAGPDLTDAEQVLDAADLAMYAAKR 518 >UniRef50_C6E7Z7 Diguanylate cyclase/phosphodiesterase with extracellular sensor n=3 Tax=Geobacter RepID=C6E7Z7_GEOSM Length = 721 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 61/164 (37%), Positives = 90/164 (54%), Gaps = 2/164 (1%) Query: 163 LREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDR 222 LR+ A L ++ D LT LPNR ++ L + A + + FIDLD+FK IND Sbjct: 261 LRQRQAHLQQLAHYDPLTRLPNRTLFYDRLAQALNQAERNRQALSVIFIDLDHFKDINDT 320 Query: 223 FGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSL-RERIQQQIR 281 GH +GDL LI V RL+T+ ++ + + RLGGDEF V + N NAD +++ ++ Sbjct: 321 LGHRTGDLLLIDVANRLSTVVRSCDTVARLGGDEFTVFTQNVMNADNAAIVAAKLNALFA 380 Query: 282 GEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 + LG+ ++Y AS+G+ + D L ADIAMY K Sbjct: 381 KPFQLGESEIYV-TASIGVTLFPNDGKTVDELLMNADIAMYHAK 423 >UniRef50_B4WG98 GGDEF domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WG98_9SYNE Length = 690 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 115/249 (46%), Gaps = 37/249 (14%) Query: 113 PIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREAN----- 167 P+ PDG GTLC + R+ S + L++ + + ++ QL++ N Sbjct: 117 PLITPDGYALGTLCVLDYQPRRMSPQQINALRMLSHQVVAQMELSRQAHQLQQVNNSLEQ 176 Query: 168 --------------------AALIAQSYT-------DSLTGLPNRRAIFENLTTLFSLA- 199 +AL+ + T D LTGLPNR + L L Sbjct: 177 RVIERTNSLSTSLHRLLKVQSALLKREATSRHNALHDPLTGLPNRSYFLQRLEQSVQLTQ 236 Query: 200 RHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLV 259 R+ NH+ + FIDLD+FK +ND GH GD L V R+ L + +++ RLGGDEF V Sbjct: 237 RNSNHQYAVLFIDLDSFKPVNDTLGHEVGDQLLTHVANRIKRLLRKSDLVARLGGDEFAV 296 Query: 260 V--SLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAA 317 + + +N I+++R RIQ + + + + L AS+GI A+S L A Sbjct: 297 LLDDIAGKNEAITAVR-RIQWHLEQPFTVANRQLSI-SASIGIALSQLGYQQAESVLRDA 354 Query: 318 DIAMYQEKK 326 D AMYQ K+ Sbjct: 355 DTAMYQAKR 363 >UniRef50_A6WA44 Diguanylate cyclase/phosphodiesterase with GAF sensor n=2 Tax=Kineococcus radiotolerans SRS30216 RepID=A6WA44_KINRD Length = 637 Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 109/235 (46%), Gaps = 16/235 (6%) Query: 105 GITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLR 164 G + ++ P+ + G +G L E W ++ Q L A + Y+ A Q Sbjct: 107 GFRSVIAVPL-ISRGRVWGVLDLYRREAGTWGQQELQWAHLLAHVAVSYLVMAADRAQAL 165 Query: 165 EANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFG 224 +A L D LTGLPNR +F+ L AR + + FIDLD FK +ND G Sbjct: 166 QAQQELAHAGTHDGLTGLPNRTLLFDRLEHALHAARRHQRTVAVFFIDLDRFKAVNDTLG 225 Query: 225 HNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD-------------ISS 271 H +GD L V R+N + + + RL GDEF+++ + A + + Sbjct: 226 HAAGDTVLATVATRMNASLRQEDTLARLAGDEFVLLCEDLPRASSGGPGDGGEVDRHVHA 285 Query: 272 LRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 + R+++ + H+ VDL GA++G V + E AD L AAD AMY+ K+ Sbjct: 286 VTSRLRRALARPVHVAGVDLMV-GATIG-VALSEEHPSADDLLAAADEAMYRAKR 338 >UniRef50_Q1GYF3 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GYF3_METFK Length = 747 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 70/210 (33%), Positives = 112/210 (53%), Gaps = 18/210 (8%) Query: 140 EQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLT-TLFSL 198 EQ L L G ++ + ++R ++ D+LT LPNRR + + L + + Sbjct: 286 EQGLPLLTGFFRDLTERRKVESEIRNL-------AFYDALTTLPNRRLLLDRLQQAIAAS 338 Query: 199 ARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFL 258 RH H ++ FIDLDNFK +ND GH+ GDL L++V RL +N + + RLGGDEF+ Sbjct: 339 VRHGRHGAVL-FIDLDNFKALNDSRGHDIGDLLLVEVARRLRQCVRNEDTVARLGGDEFV 397 Query: 259 VV----SLNNENADISSLR---ERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDAD 311 +V SLN E A I+ R +++ + I Y LG+++ ++ +S+GIV + + Sbjct: 398 IVLEDLSLNLEQA-IAQTRQVAQKVLEIINHPYQLGEIE-HHNSSSIGIVLFNGNFVSME 455 Query: 312 SALHAADIAMYQEKKHKQKTPFVAHPALHS 341 L +D AMY+ K + T PA+ + Sbjct: 456 ELLKRSDTAMYEAKAAGRNTLRFFDPAMQA 485 >UniRef50_C5CF99 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CF99_KOSOT Length = 607 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 116/224 (51%), Gaps = 3/224 (1%) Query: 106 ITTFLSTPIHLPDGSFYGTLCAAS-SEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLR 164 I T LS P+ + +G C S S + E + ++ ++ + +A +++ L E+LR Sbjct: 367 IKTMLSIPVKI-NGEPVAYFCLDSFSSSNAFDEDSIEMAKILSQQVAVILKRIKLEEELR 425 Query: 165 EANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFG 224 L S D LT LPNRR E +LA+ + I ++DL++FK +ND FG Sbjct: 426 RQKKQLKFMSEHDPLTDLPNRRLFAERAKQYIALAKRRKSPLSILYLDLNHFKEVNDSFG 485 Query: 225 HNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEY 284 H+ GDL L ++ +R + + G+++ RLGGDEF+ + + + + + +RI + I Sbjct: 486 HDVGDLVLKKITKRFKSCLREGDLVARLGGDEFVFALPDTDAENAAKVAKRIIEVIEKPI 545 Query: 285 HLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHK 328 ++ + G S+G+ + + D L AD+ MY++K+ K Sbjct: 546 NIKGKSVKISG-SIGVAVFPDDGENIDQLLKHADMNMYRDKRLK 588 >UniRef50_C6X9G9 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6X9G9_METSD Length = 984 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 98/179 (54%), Gaps = 2/179 (1%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 G + Y+ A + +++ + + L D LTGLPNRR + E L A ++I Sbjct: 527 GKVINYVGVFADISEIKHSQSRLNELVNRDPLTGLPNRRLMHELLDHAIKYAEREQNEIA 586 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLV-VSLNNEN 266 + F+DLD FK IND GH GD L +V +R+ ++ + + RLGGDEF+V + + E Sbjct: 587 LLFVDLDRFKAINDTLGHQMGDKLLFEVSQRIRAAVRDSDAVARLGGDEFIVMMDVLRER 646 Query: 267 ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 D + + ++I ++ E+ + +L+ AS+GI ++ D D + AADIAMYQ K Sbjct: 647 EDAAKVAKKIISSLQNEFLIDGRELFI-SASVGISVYPDDSLDVDGLIKAADIAMYQVK 704 >UniRef50_C5ALJ3 Putative uncharacterized protein n=1 Tax=Burkholderia glumae BGR1 RepID=C5ALJ3_BURGB Length = 381 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 64/162 (39%), Positives = 86/162 (53%), Gaps = 2/162 (1%) Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 D LTGL NR +F N AR + + + ++DLD FK IND +GH +GD L+QV Sbjct: 221 DMLTGLLNRAGLF-NAANGGKRAR-IRAGMTLFYLDLDGFKPINDAYGHEAGDRLLVQVA 278 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGA 296 ERL L + ++ R+GGDEF+VV A L I ++I + L GA Sbjct: 279 ERLLRLAGSDALVARMGGDEFVVVGDCRGEATARELAGAIAREIARPFELAPGIRVQVGA 338 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPA 338 S+GI V E TD D+ L AD AMY K++K+ P H A Sbjct: 339 SVGITPVSGEDTDIDALLRIADAAMYDAKRNKKGDPPTTHAA 380 >UniRef50_Q2C348 GGDEF domain protein n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C348_9GAMM Length = 357 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 107/218 (49%), Gaps = 8/218 (3%) Query: 111 STPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAAL 170 S P + + GT +E + SE E+++ + A +I+ +K L EQLR + Sbjct: 139 SVPYTDSNSNVLGTFAIYHNEPKSPSEIEEEIVNVAALIISVAYEKLILEEQLRFS---- 194 Query: 171 IAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDL 230 + D LT L NR + E T SL N K + FIDLD FKL+ND GH GD Sbjct: 195 ---ATHDELTKLHNRTYLNEVATKFISLCERKNLKSSLLFIDLDKFKLVNDNLGHKVGDD 251 Query: 231 FLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVD 290 L+ V + ++ ++ ++ R GGDEF++V N D + + R+ + I + +D Sbjct: 252 LLVVVSDVISQQVRSCDIASRFGGDEFIIVMENTHTRDGTQVANRLHEAIMAKVPSNILD 311 Query: 291 LYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHK 328 L + G S+G+ E D + AD AMY K+H+ Sbjct: 312 LGF-GVSIGVATSTEENQSLDQLIQKADQAMYHAKQHR 348 >UniRef50_Q3IEZ9 Putative uncharacterized protein n=2 Tax=Pseudoalteromonas RepID=Q3IEZ9_PSEHT Length = 842 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 1/166 (0%) Query: 160 VEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLI 219 + + + A ++ +Y D LTGLPNRR + L + A H + + FIDLD FK + Sbjct: 393 ITERKNAEDKIVQLAYFDELTGLPNRRLFNDRLKMALAAAHRDQHLLAVMFIDLDRFKEV 452 Query: 220 NDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQ 279 ND GH++GD L V R+ G+ + RLGGDEF+V+ N+ ++SL ++I Sbjct: 453 NDSLGHSAGDCLLTLVAARIEATLNEGDTLARLGGDEFVVLCEINKIDAVASLADKILNN 512 Query: 280 IRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 + + L V++ AS+G + D+++ L ADIAMY+ K Sbjct: 513 LNSPFQLDHVEVGVT-ASIGAAVYPDDGLDSETLLKHADIAMYRSK 557 >UniRef50_C7LSS7 Diguanylate cyclase with beta propeller sensor n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LSS7_DESBD Length = 977 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 69/169 (40%), Positives = 94/169 (55%), Gaps = 20/169 (11%) Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 D LTG+PNRR E L S + NH+I + ID+D FK NDRFGH +GDL L V Sbjct: 804 DPLTGVPNRRKFQEVLAAEKSRCKRSNHQISVLMIDIDYFKGFNDRFGHQAGDLALRSVA 863 Query: 237 ERLN-TLQQNGEVIGRLGGDEFLVV--SLNNENADISSLRERIQQQIRGEYHLGDVDLYY 293 + LN TL++ + +GR GG+EF+VV S N A ER+ Q+I+ L ++ Y Sbjct: 864 QTLNATLKRPEDFVGRYGGEEFVVVLPSTNRSGA------ERVAQKIQQALFLTNIP--Y 915 Query: 294 PGA--------SLGIVEVDPETT-DADSALHAADIAMYQEKKHKQKTPF 333 PG+ SLGI P+T DS L +AD A+YQ K++ + F Sbjct: 916 PGSPLSDRITVSLGISTFSPQTDLHIDSGLFSADQALYQAKRNGRNCFF 964 >UniRef50_Q3SG75 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SG75_THIDA Length = 954 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 63/172 (36%), Positives = 92/172 (53%), Gaps = 2/172 (1%) Query: 161 EQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLIN 220 + LRE +A L +Y D LT LPNR + + L S ++ + FIDLD FK IN Sbjct: 502 QALREKDAHLEHVAYHDPLTDLPNRALLLDRLRAAVSRNGRTGGRLAVVFIDLDRFKTIN 561 Query: 221 DRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEF-LVVSLNNENADISSLRERIQQQ 279 D GH GD L RL +L ++G+ + RLGGDEF L++ +NA ++ E+I Sbjct: 562 DSLGHAVGDAVLQAAASRLRSLTRDGDTLARLGGDEFVLLLDGLRDNAAAGAVAEKIITA 621 Query: 280 IRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKT 331 + H+G L+ AS+GI + DA++ L AD AMY+ K+ + T Sbjct: 622 LERMLHVGSYPLHI-SASIGISLYPEDGRDAEALLRHADAAMYKSKERGRNT 672 >UniRef50_C6P6X8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P6X8_9PROT Length = 713 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 72/206 (34%), Positives = 104/206 (50%), Gaps = 10/206 (4%) Query: 130 SEKRQWSERAEQVLQLFAGLIAQYIQKEALVE---QLREANAALIAQSYTDSLTGLPNRR 186 + +R S R VL + + Y + AL QL N L +Q+ +D LTGLPNRR Sbjct: 232 TAERDSSGRLTSVLAIGRDITELYESRAALKRANAQLENMNDLLQSQATSDPLTGLPNRR 291 Query: 187 AIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNG 246 + + L + + + + FIDLDNFK +ND GH+ GD L QV RL T + G Sbjct: 292 FMLDRLKHALASSSRSGREGALLFIDLDNFKTLNDTLGHDVGDQLLQQVAHRLETCVREG 351 Query: 247 EVIGRLGGDEFLVV--SLNNEN----ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGI 300 + + RLGGDEF+V+ L+ ++ A ++ E+I + Y LG + Y S+G Sbjct: 352 DTVARLGGDEFVVMLEDLSEKDLEAAAQTEAVGEKILAALNQPYQLGKHE-YRNTPSIGA 410 Query: 301 VEVDPETTDADSALHAADIAMYQEKK 326 + D L ADIAMYQ K+ Sbjct: 411 TLFNDHQQSLDELLKQADIAMYQAKR 436 >UniRef50_C6Q0A7 Putative phytochrome sensor protein (Fragment) n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q0A7_9CLOT Length = 911 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 118/223 (52%), Gaps = 11/223 (4%) Query: 114 IHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQ 173 I + + + Y L + E R+ E+ E++++ + KE +VE+ ++A L Sbjct: 696 ISMENAALYANLEKSEKELRRNHEKLEELVEERTAKL-----KEEIVER-KKAEKLLEEM 749 Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 + D+LTGLPNR+ + L LA+ + I FIDLD FK+IND GH+SGD+ L Sbjct: 750 ANHDNLTGLPNRKLFYSELKNSLQLAKENKFSLAILFIDLDGFKMINDTLGHSSGDIVLK 809 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLY 292 V +RL + G+++ R GGDEF++ N ++N I + + I +I + LG+ + Sbjct: 810 IVSQRLLKTVREGDMVSRFGGDEFIIFMTNVHQNNTIRDVCKNIINEISKKIVLGE-NYG 868 Query: 293 YPGASLGIVEVDPETTD-ADSALHAADIAMYQEKKH-KQKTPF 333 Y S+G V + P+ D + + AD AMY+ K K K F Sbjct: 869 YVSVSIG-VSIFPDHGDNIEELIKKADAAMYRAKNSGKNKVIF 910 >UniRef50_A0KIJ4 MorA n=2 Tax=Aeromonas RepID=A0KIJ4_AERHH Length = 838 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 68/179 (37%), Positives = 94/179 (52%), Gaps = 9/179 (5%) Query: 160 VEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLI 219 + + +EA + +Y D LTGLPNRR + E L F A + FIDLD+FK I Sbjct: 376 ISERKEAERRIQDLAYYDELTGLPNRRQLHETLAHAFGEASRDYLIGALLFIDLDHFKTI 435 Query: 220 NDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLV----VSLNNENADISS--LR 273 ND GH +GD L +V RL L + G+ + RLGGDEF++ +S + A++ + + Sbjct: 436 NDSLGHATGDWLLKEVASRLKRLVRQGDCLARLGGDEFVLLLPSLSASPPQAEMQADLIA 495 Query: 274 ERIQQQIRGEY-HLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKT 331 ER+ +I Y H G V + GAS+GI D L AD AMYQ K +KT Sbjct: 496 ERLISEIAAPYNHAGQV--LHIGASVGITLFPGREQGVDDLLKQADTAMYQAKSAGRKT 552 >UniRef50_Q47GC0 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Betaproteobacteria RepID=Q47GC0_DECAR Length = 862 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 99/185 (53%), Gaps = 9/185 (4%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLT-TLFSLARHLNHKI 206 G ++ YI + + ++A + A ++ D LTGLPNR + + L T+ S R +H Sbjct: 371 GRVSHYIGTHNDITERKKAEERINALAFFDQLTGLPNRTLLLDRLKQTILSSGRSDSHGA 430 Query: 207 MIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NE 265 ++ FIDLDNFK +ND GH+ GD L QV RL ++G+ + RLGGDEF+VV N N Sbjct: 431 LL-FIDLDNFKTLNDTLGHDVGDQLLKQVALRLTHCVRDGDTVARLGGDEFVVVLANLNT 489 Query: 266 N-----ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIA 320 N D ++ E+I + Y LG V ++ AS+G D + AD++ Sbjct: 490 NDKEAAQDTETVAEKILATLNQTYQLGHV-THHSSASIGATLFKGPLIPIDDLMKQADLS 548 Query: 321 MYQEK 325 MY+ K Sbjct: 549 MYKAK 553 >UniRef50_Q5E289 GGDEF domain protein n=1 Tax=Vibrio fischeri ES114 RepID=Q5E289_VIBF1 Length = 331 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 79/261 (30%), Positives = 126/261 (48%), Gaps = 16/261 (6%) Query: 75 SLCKRAIDEN--CFFSDEVPDR-WGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 S C+ I + ++ V D W D N + ++ PI PDGS YGT+CA ++ Sbjct: 79 SFCRTIIKTGKPLYIANAVEDEYWFDAPPVVNGPVRSYCGVPIFSPDGSIYGTICAIDTK 138 Query: 132 KRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFEN 191 ++ + ++L + LI ++ EQ R + TD TGL NRR + Sbjct: 139 STRYEDALTKLLLHLSKLITSDLKIAEKAEQHR-------LMALTDQTTGLLNRRGLNVL 191 Query: 192 LTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGR 251 F A+ I + ++D+DN K+IND FGH +GD + + L + + ++I R Sbjct: 192 SEQKFKDAKRNQDHIGVLYLDIDNLKIINDNFGHLAGDKCIKLLATILKKMVRQSDLIAR 251 Query: 252 LGGDEFLVVSL-NNENAD-ISSLRERIQQQIRGEYHLGDVDLYYPGASLG--IVEVDPET 307 +GGDEF V++L N+EN + + L RI++ + E + +L S+G +V D Sbjct: 252 IGGDEFTVLALINSENTNELDHLSMRIREVYQNEIK-DNAELNMSNISIGQHLVSYDSNA 310 Query: 308 TDADSALHAADIAMYQEKKHK 328 + L AD MYQEK K Sbjct: 311 S-LKEMLAKADSLMYQEKIDK 330 >UniRef50_A1STY4 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Psychromonas ingrahamii 37 RepID=A1STY4_PSYIN Length = 954 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 62/163 (38%), Positives = 92/163 (56%), Gaps = 2/163 (1%) Query: 164 REANAALIAQSYTDSLTGLPNRRAIFENLTTLFS-LARHLNHKIMIAFIDLDNFKLINDR 222 R+A L ++ DSLTGL NR L L S +R+ N + F+DLD FKL+ND Sbjct: 506 RDAKDKLRYDAFHDSLTGLYNRSWFVSYLQELLSGHSRNKNLNFAVLFLDLDQFKLVNDT 565 Query: 223 FGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRG 282 GH +GD LI V ERL + +++ R GGDEF+++ ++EN + ERI +Q+ Sbjct: 566 LGHAAGDKLLIYVAERLKKCLRETDMLARFGGDEFVILLKSDENYRFIQIAERIIEQLSL 625 Query: 283 EYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 + + + + + GAS+GI ++ DA L ADIAMY+ K Sbjct: 626 SFSINN-NYIHTGASIGITLLETGYQDAYEMLRDADIAMYRAK 667 >UniRef50_C6P3H6 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P3H6_9PROT Length = 837 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 67/235 (28%), Positives = 122/235 (51%), Gaps = 16/235 (6%) Query: 116 LPDGSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAAL 170 L GS+ G + +KR+ E + L + A G+ +Y+ + + + A + Sbjct: 344 LGSGSWTGEIW----DKRKNGEVYPKWLTITAVKDNEGVTTEYVAIFSDITLRKHAEEEI 399 Query: 171 IAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDL 230 ++ DSLT LPNRR + + + S++ NH + F+D+D FK++ND GH+ GDL Sbjct: 400 YTLAFYDSLTKLPNRRHLLDRINQARSISARSNHYGALLFLDMDRFKILNDTLGHDYGDL 459 Query: 231 FLIQVGERLNTLQQNGEVIGRLGGDEFLVV--SLNNENADISS----LRERIQQQIRGEY 284 FL++V R+ ++ + + R+GGDEF+V+ + +N ++S+ + E+I+ + Y Sbjct: 460 FLVEVSRRMRNCVRDMDTVARIGGDEFVVLIEEIGTDNEEVSTKVALIAEKIRAALTEPY 519 Query: 285 HLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 L D + ++ S+G+ D+ L AD+AMYQ K+ + PA+ Sbjct: 520 LLKDKE-HHSSPSIGVCLYLGNEESVDTLLRHADLAMYQAKESGRNGVRFFDPAM 573 >UniRef50_A1SFS0 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Nocardioides sp. JS614 RepID=A1SFS0_NOCSJ Length = 883 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 62/175 (35%), Positives = 90/175 (51%), Gaps = 1/175 (0%) Query: 165 EANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFG 224 E A L+ Q+ D+LTGLPNR + LT + R + +DLD F+ ND G Sbjct: 260 ELEAELVRQTMHDALTGLPNRSFLTYRLTQAIAEGRRRGRPVAALLLDLDQFRAANDVHG 319 Query: 225 HNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEY 284 H +GD L +V +RL L + +V+ R+GGDEF++V + + A L E++ + + Sbjct: 320 HLTGDRVLTEVADRLRVLARPTDVVARIGGDEFVLVCPDTDVAAAGRLAEQVIEAVGAPI 379 Query: 285 HLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 + L GAS+GI P DA+ L AD AMY+ KK + V PAL Sbjct: 380 QVEHRALRV-GASVGIAVAPPLDCDAEVLLKHADAAMYEAKKRGRARSQVFDPAL 433 >UniRef50_A3Y6G1 Sensory box protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y6G1_9GAMM Length = 702 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 65/170 (38%), Positives = 90/170 (52%), Gaps = 6/170 (3%) Query: 164 REANAALI-AQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDR 222 R+A+ LI Q+ D LTGLPNRR + + L L H N + + ++DLD FK +ND+ Sbjct: 249 RKADEKLIWQQANYDHLTGLPNRRLLLDRLEQLIHRIHHTNSSLALFYLDLDRFKEVNDK 308 Query: 223 FGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVV--SLNNENADISSLRERIQQQI 280 FGH GDL L V +RL + + + RLGGDEF ++ L +E+ ERI Q I Sbjct: 309 FGHAKGDLLLQDVAKRLTQCVRKSDTVARLGGDEFTIIIAELEDEDKANKITVERIAQAI 368 Query: 281 RGEYHLG---DVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKH 327 + D + Y AS+GI + +D L+AAD AMY KK Sbjct: 369 LNALNRPFKLDNEQVYISASIGITFYPEDANFSDVLLNAADQAMYAAKKQ 418 >UniRef50_Q15NC5 Diguanylate cyclase/phosphodiesterase n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15NC5_PSEA6 Length = 681 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 110/210 (52%), Gaps = 4/210 (1%) Query: 132 KRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFEN 191 K++ +E + + + + A+ + EQL+E A+ + D LTGLPNR+ E Sbjct: 219 KQEVAELSRDINSMMETINAETQKNAKYTEQLKEQQKAMERLANFDGLTGLPNRQFFMET 278 Query: 192 LTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGR 251 L + A+ +++ + DLD FK +ND FGH GDL L++V R ++ ++G++I R Sbjct: 279 LRLELAKAKRDERNLVLMYFDLDGFKGVNDSFGHEIGDLVLMEVCRRTKSILRDGDLISR 338 Query: 252 LGGDEFLVVSLNNENADIS--SLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTD 309 LGGDEFL++ L+NE D+ + ER+ + + + ++ G S+GI + Sbjct: 339 LGGDEFLIL-LHNEPNDLELYEISERLVSGLNMPFEIQSWEVQV-GVSIGIARASDSNFN 396 Query: 310 ADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 + ADIAMY+ K + T V P + Sbjct: 397 VSEFVSNADIAMYRSKLAGRSTHTVFVPEM 426 >UniRef50_A0YEH3 Sensory box/GGDEF family protein n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YEH3_9GAMM Length = 700 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 100/177 (56%), Gaps = 2/177 (1%) Query: 150 IAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIA 209 ++ YI + + R+ L+ Q++ D LTGL NR + E LT A+ N ++ + Sbjct: 239 VSHYIVVKEDITVQRDYEQQLLRQAHYDDLTGLANRVLLVEKLTQALQNAQQNNSQLAVL 298 Query: 210 FIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEF-LVVSLNNENAD 268 IDLD+FK +ND GH+ GD L Q +RL++ ++G+++ R+GGDEF LV+ L ++ + Sbjct: 299 GIDLDDFKNVNDSVGHSIGDTLLKQAAQRLSSCIRSGDIVARMGGDEFVLVLPLLSDAKN 358 Query: 269 ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 + +RI Q+ +++ Y S+GI +T+DA L AD+AMYQ K Sbjct: 359 AELMAQRIVQKFSKPFNIAGRQ-YSVTCSIGISVYPDDTSDAHMMLRNADLAMYQSK 414 >UniRef50_C1D1Y2 Putative diguanylate cyclase domain protein; putative membrane protein n=1 Tax=Deinococcus deserti VCD115 RepID=C1D1Y2_DEIDV Length = 373 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 59/157 (37%), Positives = 85/157 (54%), Gaps = 3/157 (1%) Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLN--HKIMIAFIDLDNFKLINDRFGHNSGDLF 231 +YTD+LTGLPNRR + L + + A + + + F+DLD FK +ND +GH+ GD Sbjct: 208 AYTDALTGLPNRRYFEQELDSALAAAGEVTPPQPLSVIFMDLDGFKQVNDTYGHDVGDQV 267 Query: 232 LIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDL 291 L V ERL + + GE+I RL GDEF + + ++R R+ + + LG +L Sbjct: 268 LKVVAERLRSTFRGGELIVRLSGDEFAALIPTATPEGMQAIRSRVAEALGKPIALGGQEL 327 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHK 328 + ASLG TD + LH AD AMY K H+ Sbjct: 328 HI-AASLGFSVFPEHGTDVRTLLHHADTAMYGMKSHR 363 >UniRef50_Q15SE8 Diguanylate cyclase with GAF sensor n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15SE8_PSEA6 Length = 515 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 68/235 (28%), Positives = 125/235 (53%), Gaps = 14/235 (5%) Query: 111 STPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAAL 170 S PI +G G+ ++Q+S + +++ LI Q++ + + +A+ + Sbjct: 284 SEPIIGNNGKVLGSFVIYF--QKQYSPKNDEL-----KLIEQFVNLTRIAIEREKADKLI 336 Query: 171 IAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDL 230 Q+ DSLT LPNR ++E+L + + A ++ +A +DLD FK +ND GH +GD+ Sbjct: 337 WQQANYDSLTYLPNRNLLYEHLASAMTQANREKKQLAVAMLDLDKFKAVNDTLGHAAGDI 396 Query: 231 FLIQVGERLNTLQQNGEVIGRLGGDEFLVV---SLNNENADISSLRERIQQQIRGEYHLG 287 L++ +R+ + ++ RLGGDEF++V +++ E DI++L ++ + Y + Sbjct: 397 VLVECSKRIKGCIRKSDIAARLGGDEFIIVLRDAISPE--DIAALGRKLSDALAKPYFIQ 454 Query: 288 DVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK-KHKQKTPFVAHPALHS 341 D +Y AS+GI + D D+ L AD AMY+ K K + + A+ ++ S Sbjct: 455 DESVYCT-ASIGIAFYPNDAADMDTLLKNADQAMYKAKAKGRNSVHYFANQSIPS 508 >UniRef50_C4XM69 GGDEF domain protein n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XM69_DESMR Length = 376 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 71/187 (37%), Positives = 108/187 (57%), Gaps = 13/187 (6%) Query: 149 LIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAI---FENLTTLFSLARHLNHK 205 L+A++ +K L+ +L++ L + TD+LTGLPNRR + FENL FS H N K Sbjct: 195 LLAKH-EKGLLINRLQDKQKLLSDMARTDALTGLPNRRLLAEQFENLANGFS---HNNEK 250 Query: 206 IMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-N 264 FID++NFKLIND GH GD LI + + L + +V+ RLGGDEF+V+ N N Sbjct: 251 FAALFIDMNNFKLINDEHGHEVGDKALILLADTLRNAVRKSDVVARLGGDEFIVIVKNVN 310 Query: 265 ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGI-VEVDPETTDADSAL-HAADIAMY 322 ++ ++ ++I + + DVD + AS I V V P+ ++ AL +AAD +M+ Sbjct: 311 SKDEVDAVTQKITESLEITI---DVDSHKINASASIGVSVYPDDGNSLEALINAADASMF 367 Query: 323 QEKKHKQ 329 EK+ + Sbjct: 368 CEKRKSR 374 >UniRef50_B7KGI8 Diguanylate cyclase with PAS/PAC and GAF sensors n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KGI8_CYAP7 Length = 1079 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 115/229 (50%), Gaps = 9/229 (3%) Query: 110 LSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAA 169 L P+ + G G ++SE + SE V Q A ++++I + QLRE+ Sbjct: 855 LCVPM-MAQGQAVGLFYLSASEPDKLSE----VKQQLARAVSEHISLALVNLQLRES--- 906 Query: 170 LIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGD 229 L AQS DSLT L NRR + E+L SLA+ H + + ID+D+FK ND FGH +GD Sbjct: 907 LKAQSIKDSLTDLYNRRYMEESLKREISLAQRKQHSVGLIMIDVDHFKEFNDTFGHKAGD 966 Query: 230 LFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRG-EYHLGD 288 L L +V L ++G++ R GG+EFL++ D E+I+Q I+ ++ D Sbjct: 967 LVLQEVSNFLMINVRSGDIACRYGGEEFLLILPEASLTDSQQRAEQIRQGIKQLDFKRYD 1026 Query: 289 VDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHP 337 S+G+ T+ D + AAD A+YQ KK + V P Sbjct: 1027 QSFRSVTVSVGVASFPDHGTNNDQLIQAADTALYQAKKQGRDRVVVFSP 1075 >UniRef50_C5SC92 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SC92_CHRVI Length = 1124 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 65/171 (38%), Positives = 92/171 (53%), Gaps = 2/171 (1%) Query: 160 VEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLI 219 V + R A L+ + D LTGLPNR I E L ++ + + FIDLD FKL+ Sbjct: 522 VTERRLAEEELVWHAIHDPLTGLPNRTMIHERLERALRRSKQQGQSVALLFIDLDGFKLV 581 Query: 220 NDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQ 278 ND GH +GD L V +RL + G+ IGRLGGDEF+V+ + E+ A +++L +R+ Sbjct: 582 NDSHGHQAGDELLKTVAQRLVDHVRPGDTIGRLGGDEFVVLCDHVESPAAVANLADRLND 641 Query: 279 QIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQ 329 +R L L + AS+G+ T AD L AD AMYQ K+ + Sbjct: 642 LLREPVTLSGRRL-FASASIGLAIGHGTTHSADDLLRNADAAMYQAKEQGR 691 >UniRef50_Q60BD0 Sensory box protein n=1 Tax=Methylococcus capsulatus RepID=Q60BD0_METCA Length = 1214 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 96/188 (51%), Gaps = 7/188 (3%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 G I Y+ + + +L+ + +Y DSLTGLPNR IFE LT AR Sbjct: 755 GDITHYVAISSDISELKRTEEKIRQLAYYDSLTGLPNRSLIFERLTQQMKAARREGTYGA 814 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLV-VSLNNEN 266 + F+DLD FK +ND GH+ GD L+QV ERL ++ E RLGGDEF+V ++ + Sbjct: 815 LLFMDLDYFKTLNDSLGHHMGDRLLVQVAERLKNCLEDEEAAARLGGDEFVVLLAPAKPS 874 Query: 267 ADISSLR-----ERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAM 321 A +++ + R+++ + + L D ++Y S+GI A+ L AD AM Sbjct: 875 ASVAAGQAIVHARRVRELLSAPFQLDDY-VHYISVSIGIALFPDGANTAEDVLKQADTAM 933 Query: 322 YQEKKHKQ 329 Y K + Sbjct: 934 YVAKNEGR 941 >UniRef50_C7RC12 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RC12_KANKD Length = 629 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 62/171 (36%), Positives = 92/171 (53%), Gaps = 4/171 (2%) Query: 162 QLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLIND 221 +L+E A +A Y D LT LPNR FE L LA+ + + F+DLD FK +ND Sbjct: 195 KLKEREARYLA--YHDELTNLPNRTLFFERLEHALDLAKRKEELLAVIFLDLDEFKTVND 252 Query: 222 RFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQI 280 FGH GDL L +V +R+ + + RLGGDEF+++ + E+ + I ++ +R++ + Sbjct: 253 TFGHAQGDLLLQKVAKRILVALREHDTFARLGGDEFVIMLEDVEDREAIVNVLDRVKHAL 312 Query: 281 RGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKT 331 LG + Y SLG+ + DA L AD+AMY KKH + T Sbjct: 313 DTPITLG-TNQVYITPSLGVAIYPEDGDDAQDLLKKADMAMYNSKKHGKNT 362 >UniRef50_Q31G31 Diguanylate cyclase/phosphodiesterase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31G31_THICR Length = 891 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 66/173 (38%), Positives = 96/173 (55%), Gaps = 4/173 (2%) Query: 161 EQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLIN 220 EQL++ L +Y D LT LPNR + LT A+ + K+ + FIDLD FK IN Sbjct: 448 EQLQQQKNDLDFIAYHDPLTDLPNRILFLDRLTQAIHQAQRNHDKVALLFIDLDRFKEIN 507 Query: 221 DRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEF--LVVSLNNENADISSLRERIQQ 278 D FGH SGDL LI+ G+RL + + + RLGGDEF L+ L N I+ +++ I Sbjct: 508 DSFGHASGDLVLIECGKRLKKAIREIDTVARLGGDEFTILIDELKTNNVIINVVKKII-- 565 Query: 279 QIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKT 331 + + + ++++ AS+GI + TDA+ L AD AMYQ K+ + T Sbjct: 566 KTLSDPIFVNENIFHITASIGISIFPNDGTDANQLLQNADAAMYQAKEDGKNT 618 >UniRef50_A1TQ27 Periplasmic sensor diguanylate cyclase/phosphodiesterase n=5 Tax=Comamonadaceae RepID=A1TQ27_ACIAC Length = 962 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 66/185 (35%), Positives = 93/185 (50%), Gaps = 7/185 (3%) Query: 147 AGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKI 206 G ++Y+ + R+A AA+ +Y D+LTGLPNRR +FE L AR Sbjct: 504 GGGASRYVALARDITARRDAEAAMHRMAYYDALTGLPNRRLLFEQLQDALDQARSGGRIG 563 Query: 207 MIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVV---SLN 263 + FIDLDNFK +ND GH +GD L+QV RL L Q + R+GGDEF+V+ N Sbjct: 564 ALFFIDLDNFKQLNDARGHAAGDRLLVQVARRLERLLQGFGSVVRIGGDEFVVLIPRIAN 623 Query: 264 NENADI---SSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIA 320 A + ++ R+++ + Y LG Y AS G+ + L AD A Sbjct: 624 GMQAGVDAAGAMAARLREGMEAPYDLGST-YYSVTASTGVTLFPKAGETVEDLLREADTA 682 Query: 321 MYQEK 325 MY+ K Sbjct: 683 MYRAK 687 >UniRef50_B3E241 Diguanylate cyclase n=1 Tax=Geobacter lovleyi SZ RepID=B3E241_GEOLS Length = 557 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 100/180 (55%), Gaps = 3/180 (1%) Query: 149 LIAQYIQKEALVEQLREANAALI-AQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 L+A ++ AL RE AAL+ A ++ D+LTGLPNRR + + L + A K+ Sbjct: 357 LLAFLARQVALNALQREETAALVHAMAFRDALTGLPNRRLLEDRLNQSIASADRNAGKVA 416 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NEN 266 + F+DLD+FK +ND GH GD L QV RL + + + RLGGDEF+++ LN + Sbjct: 417 VLFLDLDHFKAVNDTLGHEVGDQLLKQVSGRLQEAVRKSDTVARLGGDEFILLLLNITSH 476 Query: 267 ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 D+ S+ +++ Q I + + G S+GI + TD +S + AD A+Y+ K+ Sbjct: 477 QDVDSVADKVIQAISRPFSIAGQQAQV-GTSIGIALYPEDCTDPESLVAFADKALYKAKQ 535 >UniRef50_B0TJQ1 Diguanylate cyclase/phosphodiesterase with GAF sensor n=20 Tax=Shewanella RepID=B0TJQ1_SHEHH Length = 909 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 113/220 (51%), Gaps = 18/220 (8%) Query: 120 SFYGTLCAASSEKRQWSERAEQVLQLFA----------GLIAQYIQKEALVEQLREANAA 169 +F A + EK+Q E +Q +L + Q ++KE + Q + Sbjct: 415 TFVSQHIATAIEKKQSEESLKQSYELLEEKVDERTKALASVNQDLEKE--INQRKRIERQ 472 Query: 170 LIAQSYTDSLTGLPNRRAIFENLT-TLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSG 228 L+ + D+LTGLPNR E LT + + RH + + FID+D FKL+ND GH G Sbjct: 473 LVHDAKHDNLTGLPNRSMFMERLTQAIKHVRRHSLERFAVLFIDMDRFKLLNDTLGHLEG 532 Query: 229 DLFLIQVGERLNTLQQNGEVIGRLGGDEFLVV--SLNNENADISSLRERIQQQIRGEYHL 286 D FLI+ +RL +N +++ RLGGDEF+++ S++ + D + ER+ ++ Y L Sbjct: 533 DRFLIETAKRLKQCIRNNDMLARLGGDEFVILLDSISGQQ-DAEDVAERVLAELSKPYQL 591 Query: 287 GDVDLYYPGASLGIVEVDPETTD-ADSALHAADIAMYQEK 325 + + AS+G+ +D ++S L AD AMYQ K Sbjct: 592 ANQQ-FKSSASIGLAMSGQSRSDTSESILRDADTAMYQAK 630 >UniRef50_Q47C60 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Rhodocyclaceae RepID=Q47C60_DECAR Length = 714 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 92/180 (51%), Gaps = 5/180 (2%) Query: 151 AQYIQKEALVEQLREAN---AALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 ++ E VE + E + + L Q+ D LTGLPNR + + L LAR + K+ Sbjct: 262 GSFLYYEGTVEDITERHRYQSVLQHQATHDPLTGLPNRNLLEDRLAQAVQLARRKSSKVA 321 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEF-LVVSLNNEN 266 +AF+DLDNFK+IND GH +GD LI++ RL + + + R GGDEF L++ Sbjct: 322 LAFVDLDNFKVINDSLGHAAGDQLLIEISSRLRAALRGLDTVARYGGDEFVLILGEQTSM 381 Query: 267 ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 AD L ER+ I+ L L S+G+ + D D L AD+AMY K+ Sbjct: 382 ADTMHLLERVLVSIQAPLALEGHGLRI-NCSIGVSVFPDDAQDLDGLLRVADVAMYHAKE 440 >UniRef50_B5ED91 Diguanylate cyclase/phosphodiesterase n=3 Tax=Geobacter RepID=B5ED91_GEOBB Length = 742 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 100/186 (53%), Gaps = 10/186 (5%) Query: 145 LFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNH 204 + A L+ +K+ EQL +Y DSLTGL NRR + + + A+ Sbjct: 278 MVATLLEDVTEKKRTAEQLERL-------AYYDSLTGLLNRRMLLDRMEQAIGTAQREGV 330 Query: 205 KIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNN 264 K+ F+DL+ FK+IND GH +GD L++V +RL + + + + RLGGDEF+V + Sbjct: 331 KVATLFMDLNGFKVINDTLGHKAGDQILVEVAKRLQKMVRKRDTLARLGGDEFVVAATFE 390 Query: 265 ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDA-DSALHAADIAMYQ 323 ++ + S++ + + I Y + D ++Y G S+GI + P+ D ++ L ADIAMY Sbjct: 391 KDENASAIAKNLINAITPVYQVCDREVYV-GVSVGI-SIFPDDGDVPETLLKNADIAMYN 448 Query: 324 EKKHKQ 329 K Q Sbjct: 449 AKSQGQ 454 >UniRef50_C6MGV8 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MGV8_9PROT Length = 813 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/194 (32%), Positives = 101/194 (52%), Gaps = 2/194 (1%) Query: 147 AGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKI 206 G+ Q++ + + ++RE L +Y DSLT LPNR I + L + A + + Sbjct: 353 TGMEKQFVVMISDITKIRETQEQLAHFAYYDSLTNLPNRILIMDRLNQAIAKAARDSSLL 412 Query: 207 MIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN 266 I FIDLDNFK IND GH GD L + +R+ ++ + + +GRL GDE++ V+ N E+ Sbjct: 413 GILFIDLDNFKRINDTLGHKHGDSMLCLISQRILSVLRQSDTLGRLSGDEYIAVAGNVES 472 Query: 267 AD-ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 D + + +I I L ++++ P S+GI + + D + AD AMY+ K Sbjct: 473 YDALIRIAGKILDCISKPVVLSNMEI-IPSCSIGISVYPHHSENPDHLVQMADTAMYEAK 531 Query: 326 KHKQKTPFVAHPAL 339 K+ + HP L Sbjct: 532 KNGRNNYAFYHPGL 545 >UniRef50_Q2BL49 Sensory box/GGDEF domain/EAL domain protein n=2 Tax=cellular organisms RepID=Q2BL49_9GAMM Length = 1014 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 99/177 (55%), Gaps = 2/177 (1%) Query: 151 AQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAF 210 + Y+ + + +L+EA L ++ D+LT LPNR ++ + + + A K + F Sbjct: 567 SSYVAVFSDISELKEAEQKLEKLAHYDNLTSLPNRTLFYDRIESSLARAARNGKKTALLF 626 Query: 211 IDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD-I 269 +D+D FK +ND GH++GD L++ R++ + G+ + RLGGDEF V+ + D + Sbjct: 627 VDIDRFKQVNDNHGHHTGDQLLVEAARRISAHIRLGDTVARLGGDEFTVILSELDGLDPV 686 Query: 270 SSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 + RIQ+ +R + L D ++ + AS+GI + +A+S L AD+AMY K+ Sbjct: 687 QDIARRIQKSLRDPFRLDDKEI-FSSASIGIAMYPDDGRNAESLLKHADVAMYHVKE 742 >UniRef50_C5V3L4 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V3L4_9PROT Length = 900 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/185 (34%), Positives = 98/185 (52%), Gaps = 7/185 (3%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 G++ Y+ + + Q + A + ++ D LT LPNRR + + L + A Sbjct: 434 GMVTNYVGVLSDLTQRKAAEEKIENLAFFDPLTKLPNRRLLLDRLKQAMASATRSVTNGA 493 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVV--SLNNE 265 + FIDLDNFK +ND +GH GDL L QV +RL + ++G+ + R GGDEF+V+ + Sbjct: 494 VLFIDLDNFKALNDTYGHPMGDLLLQQVAKRLVSSVRDGDTVSRFGGDEFVVLLEGFDEN 553 Query: 266 NADISSLRERIQQQI----RGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAM 321 D +S E + +QI R Y +G + Y+ +S+G + + D + ADIAM Sbjct: 554 PLDAASQAETVGEQIFAALRQPYLIGTHE-YHGTSSIGATLFNDKQQSIDELMKQADIAM 612 Query: 322 YQEKK 326 YQ KK Sbjct: 613 YQAKK 617 >UniRef50_A1SY75 Diguanylate cyclase/phosphodiesterase n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SY75_PSYIN Length = 591 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 108/202 (53%), Gaps = 14/202 (6%) Query: 131 EKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFE 190 + ++ ++RA ++ + L Q +K L E+L + ++ D+LTGLPNRR + + Sbjct: 122 QSKEKAKRAAELAIVNQDLTFQSKEKAKLAEELNDL-------AFYDTLTGLPNRRLLID 174 Query: 191 NLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIG 250 L + + + FIDLD+FK IND GH GDL LIQ +RL + + G+ + Sbjct: 175 RLHHALASNVRQGCESAVMFIDLDHFKDINDTLGHEVGDLLLIQTAQRLESCLRKGDTVA 234 Query: 251 RLGGDEFLVVSLN-NEN-----ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVD 304 RLGGDEF+++ N +EN ++ ++I ++ Y L D+ + S+G V D Sbjct: 235 RLGGDEFMLILENLDENPIEAATKAKAIADKILAELNKPYQL-DMHKCHSTVSIGAVFFD 293 Query: 305 PETTDADSALHAADIAMYQEKK 326 + A+ + ADIAMYQ K+ Sbjct: 294 HQGNTAEDLIKQADIAMYQAKQ 315 >UniRef50_C5V4D4 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Gallionella ferruginea ES-2 RepID=C5V4D4_9PROT Length = 925 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 95/169 (56%), Gaps = 4/169 (2%) Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 +Y D LTGLPNRR + + L+ S + K+ + ++DLD+FK +ND GH +GD+ L Sbjct: 499 AYHDQLTGLPNRRLLKDRLSQAVSSVVRRDAKLALMYLDLDHFKDVNDSLGHGAGDVLLQ 558 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA--DISSLRERIQQQIRGEYHLGDVDL 291 V ERL + + + R+GGDEF+++ LN N D++S+ +I ++ +G+ +L Sbjct: 559 IVAERLQGCVRADDTLARMGGDEFVLL-LNGVNGADDVASIAGKIIHELSQPMRIGNDEL 617 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 SLGI + DAD L AD+A+YQ K+ + T ALH Sbjct: 618 RIT-PSLGISMCPQDGRDADDLLKYADVALYQAKQQGRATYRFYTQALH 665 >UniRef50_B2UEP7 Diguanylate cyclase with PAS/PAC sensor n=6 Tax=Ralstonia RepID=B2UEP7_RALPJ Length = 972 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 55/160 (34%), Positives = 89/160 (55%), Gaps = 3/160 (1%) Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 ++ D+LTGLPNR ++E L + L + + ++D+D+FK IND +GH +GD L+ Sbjct: 812 AHFDALTGLPNRYELYERLRAALERRQRLPAPLGVLYLDVDHFKHINDTYGHAAGDTVLV 871 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLR--ERIQQQIRGEYHLGDVDL 291 +V RL + + + RL GDEF+++ L+ +A +L ++I IR HL D + Sbjct: 872 EVAHRLQRAVRRTDTVARLAGDEFIIL-LDPIDAPDDALHTAQKIVSAIRPPIHLSDGTV 930 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKT 331 + S+G+ PE D D+AL AD A+Y K + T Sbjct: 931 LHVTTSVGVACPGPEVHDPDAALREADRALYWAKSRGRNT 970 >UniRef50_B0C776 Diguanylate cyclase/phosphodiesterase with EAL and GAF domains n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C776_ACAM1 Length = 755 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 12/197 (6%) Query: 132 KRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFEN 191 +RQWS +LQ ++ ++ + L+ ++ D LT LPNR Sbjct: 285 ERQWSTPDISLLQTLVASLSGALKHH-------QKETELLHHAFHDPLTDLPNRALFINR 337 Query: 192 L-TTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIG 250 L +L L R+ ++ + F+DLD FK+IND GH GD L+ + ERL + + G+ Sbjct: 338 LEQSLKQLQRYPDYLFAVLFLDLDRFKIINDSMGHGVGDQLLMGIAERLLSSLRPGDTAS 397 Query: 251 RLGGDEFLVV--SLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETT 308 RLGGDEF+++ L N+ D +S ER++QQ+ ++LG V + S+GI + Sbjct: 398 RLGGDEFVILLNGLQNQE-DATSTAERLRQQLTLPFNLG-VHEIFIDVSIGITLSNFGYH 455 Query: 309 DADSALHAADIAMYQEK 325 DA+ L AD+AMYQ K Sbjct: 456 DAEQVLQDADVAMYQAK 472 >UniRef50_Q31GH8 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=3 Tax=cellular organisms RepID=Q31GH8_THICR Length = 1466 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 112/237 (47%), Gaps = 20/237 (8%) Query: 108 TFLSTPIHLPDG----SFYGTLCAASSEKRQW----------SERAEQVLQLFAGL---- 149 T TP L G FY + + EK W E + L + GL Sbjct: 954 TLGKTPRMLASGRHSREFYQNVWKSIKEKGHWQGEIWNRRKNGEIFPEWLSISRGLDTSG 1013 Query: 150 -IAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMI 208 + +Y+ + +++E+ + ++ D LTGL NR + + L S A N + + Sbjct: 1014 NVTEYVGIFNDISKVKESEEKIKHLAHYDPLTGLVNRELLMDRLNHSISTADRNNTPLAL 1073 Query: 209 AFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD 268 FIDLD+FK +ND GH GD LI+VG+R+ + ++ + I R GGDEF+VV + Sbjct: 1074 LFIDLDHFKNVNDTLGHQVGDQLLIEVGQRILKILRDEDTIARQGGDEFIVVLPDTGENG 1133 Query: 269 ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 + E+I + I + +L L+ S+GI + DADS L AD AMYQ K Sbjct: 1134 AVHVAEKILESISDQLNLKPYKLFIT-PSIGIAVYPQDGKDADSLLKNADTAMYQAK 1189 >UniRef50_B8GRM9 Signal transduction protein containing a membrane domain an EAL and a GGDEF domain n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GRM9_THISH Length = 854 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 86/169 (50%), Gaps = 1/169 (0%) Query: 157 EALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNF 216 +A+ Q+ AL Q+ D+LT LPNR + + L L ++ + +DLD F Sbjct: 398 KAMQRQIHHRQKALEHQALHDALTRLPNRVLLNDRLEQAIQLMERNGGQLAVLLLDLDRF 457 Query: 217 KLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERI 276 K +ND GH GD L QV RL T + + + RLGGDEF +++LN + A +I Sbjct: 458 KEVNDALGHPVGDKLLQQVARRLRTSLRGSDTVARLGGDEFAILALNTDGASALEFAGKI 517 Query: 277 QQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 Q I G + + ++Y G S+GI DA S + ADIAMY K Sbjct: 518 HQAISGVFTIEHQNVYV-GTSIGIALYPEHGNDASSLMRRADIAMYAAK 565 >UniRef50_A1SZA9 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=6 Tax=Psychromonas ingrahamii 37 RepID=A1SZA9_PSYIN Length = 777 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 99/192 (51%), Gaps = 11/192 (5%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 G+++ Y+ + + A+ + +Y D LT LPNRR + ++L + +++ N Sbjct: 321 GVVSNYVATFRDITTSKAASEKINNLAYFDPLTQLPNRRMLLDSLRHVLTISARSNQHCA 380 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA 267 + F+DLDNFK +ND GH+ GDL L QV RL + G+++ RLGGDEF+V+ EN Sbjct: 381 LLFLDLDNFKTLNDTLGHDVGDLLLQQVATRLTDCVREGDIVARLGGDEFVVLL---ENL 437 Query: 268 DISSLRERIQQQIR--------GEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADI 319 + ++ + + +Y+ ++ Y+ S+G+ T + L ADI Sbjct: 438 SLQAIEAANKAKKVAKKIIFELAQYYQLNMHRYHSTTSIGVTIFSGNETGIEELLKQADI 497 Query: 320 AMYQEKKHKQKT 331 AMYQ K + T Sbjct: 498 AMYQSKAAGRNT 509 >UniRef50_Q2SP96 FOG: GGDEF domain n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SP96_HAHCH Length = 689 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 88/341 (25%), Positives = 151/341 (44%), Gaps = 58/341 (17%) Query: 18 SLESLVRQLLEMLEMVTDMESTYLTKVD-VEARLQHIMFARNSQKM----YIPENFTVSW 72 SL VR E++++ D+ES + + +E + + + ++ Y+PE ++V Sbjct: 375 SLRMRVRTQREVMKINIDLESKVKERTEQLEEKNTQLSLVQAIAQLGSFEYLPEQWSVCC 434 Query: 73 DYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEK 132 + C G AR+L + F+S IH D E Sbjct: 435 NAEFCSMV---------------GLPFEARSLSVEAFMSF-IHPSD----------REEL 468 Query: 133 RQWSERAEQVLQLFAGLIAQYIQKEAL-------------------------VEQLREAN 167 R +ERA ++ Q F G + + +L V QL+EA Sbjct: 469 RNATERALKINQPFHGCLRTIRKDGSLCYFNYTSRPISHRDGRTSILGSVIDVTQLKEAE 528 Query: 168 AALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNS 227 + + D LTGL NRR + E T +AR ++I++ + DLD FK IND++GH+ Sbjct: 529 SRFKEMANHDDLTGLANRRLLDELFTKAEHMARRCANEIVVLYCDLDKFKPINDQYGHDV 588 Query: 228 GDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHL 286 GD L+ V +RL + + + R+GGDEF+++ + + D + + + + +RG H+ Sbjct: 589 GDAVLVAVAQRLRESFRESDTVARIGGDEFVILLNGHCSKDQLHGIIHKTKHSLRGPIHI 648 Query: 287 GDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKH 327 +V S+G + D+ L+ AD MYQEK++ Sbjct: 649 KNVSCNV-DVSIGYAAYPGDGACLDTLLNVADNRMYQEKQY 688 >UniRef50_C5V069 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V069_9PROT Length = 734 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 69/182 (37%), Positives = 92/182 (50%), Gaps = 24/182 (13%) Query: 165 EANAALIAQ-SYTDSLTGLPNRRAIFENLTTLFS-LARHLNHKIMIAFIDLDNFKLINDR 222 +A A I Q ++ DSLTGLPNR + + + + + ARH NH I FIDLDNFK +ND Sbjct: 292 KAQAVHIEQLAFYDSLTGLPNRSLLRDRVQRVLAHSARHKNHG-AILFIDLDNFKALNDT 350 Query: 223 FGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRG 282 GHN GDL LI+V +RL +N + + R+GGDEF+VV + L E QQ + Sbjct: 351 KGHNIGDLLLIEVAKRLQDCVRNSDTVARMGGDEFVVV--------LEELNEDTQQAVAQ 402 Query: 283 EYHLGDVDL-------------YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQ 329 +G+ L +Y AS+GI D AD AMYQ K + Sbjct: 403 AQDIGETVLASLNRPFNLQGFEHYSSASIGISLFRDNEIGMDDVFKHADTAMYQAKTSGR 462 Query: 330 KT 331 T Sbjct: 463 NT 464 >UniRef50_B0U8W3 Diguanylate cyclase/phosphodiesterase n=7 Tax=Methylobacterium RepID=B0U8W3_METS4 Length = 669 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 93/180 (51%), Gaps = 7/180 (3%) Query: 151 AQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAF 210 A I+K+ + L E N L ++TDSLTGLPNRR F L L ++ +A Sbjct: 222 AALIRKQEEMRLLAEENFRL---AHTDSLTGLPNRRYFFAALDGLRDGPD--RAELALAI 276 Query: 211 IDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEF-LVVSLNNENADI 269 DLD+FK IND +GH++GD L + G RL +L + RLGGDEF ++ D+ Sbjct: 277 FDLDHFKSINDSYGHSAGDRVLAETGRRLGSLAGKAVRVARLGGDEFGALIDARALGRDV 336 Query: 270 SSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQ 329 ++ + +R + GD+ L PG S G+ D + AD A+YQ K+H++ Sbjct: 337 AAFCREVSDLLRQPFRAGDI-LLSPGCSCGVAFASAADRDGAALFDHADHALYQSKQHRR 395 >UniRef50_C5V330 Diguanylate cyclase with PAS/PAC and GAF sensors n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V330_9PROT Length = 484 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/238 (31%), Positives = 117/238 (49%), Gaps = 19/238 (7%) Query: 101 ARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALV 160 A G+ S PI GT +K SE V++ A L + I+++ L Sbjct: 240 AAKAGLGACWSEPIRSSFNQVLGTFAIYHKDKNYPSEADIYVIEQSAHLASIAIERKLLE 299 Query: 161 EQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLIN 220 E++R+ ++ D+LT LPNRR + E L S+++ + + FIDLDNFK IN Sbjct: 300 EKVRQL-------AFYDTLTNLPNRRLLKERLNQAMSVSKRTHCYCALMFIDLDNFKPIN 352 Query: 221 DRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVV--SLNNENADISSLRERIQQ 278 D GH GDL LI +RL + + + + R GGDEF+V+ L+ + A +S +R+ Q Sbjct: 353 DMHGHGIGDLLLIDAAKRLKSCVREMDTVARFGGDEFVVLLSELDVDQAISTSQAQRVAQ 412 Query: 279 QIRGEYHLGDV---DL-------YYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 +IR + V D+ + AS+G+ + + D L AD AMY+ K+ Sbjct: 413 KIRAALSVPYVLPTDILPAATIEHRCTASIGVTVFLNQGINQDDILKQADAAMYEAKE 470 >UniRef50_Q39X25 Diguanylate cyclase/phosphodiesterase n=2 Tax=Geobacter RepID=Q39X25_GEOMG Length = 633 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 75/252 (29%), Positives = 125/252 (49%), Gaps = 19/252 (7%) Query: 106 ITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLRE 165 + T L PI D AA + + + EQ+LQ +A + ++ L+E LR Sbjct: 116 MNTALLVPIF--DEGRVAACIAAFRMDKPFDQVDEQLLQQYAHSASAVLRNFRLMEDLRR 173 Query: 166 ANAAL---IAQ-----------SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFI 211 A L +A+ +Y DSLTGLPNRR + L +LA+ + + F+ Sbjct: 174 HAAMLEEEVAERSRAEERIRQMAYYDSLTGLPNRRLFNDRLRQSLALAQRHKRPLAVMFL 233 Query: 212 DLDNFKLINDRFGHNSGDLFLIQVGERL-NTLQQNGEVIGRLGGDEFLV-VSLNNENADI 269 DLD FKLIND GH GD L+ V +RL N ++ G+ + R GGDEF++ +S ++ D Sbjct: 234 DLDRFKLINDTLGHAVGDRLLMAVAKRLRNCCRREGDTVARQGGDEFIINLSAISDVKDA 293 Query: 270 SSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQ 329 ++ ++I R + + +L+ S+GI + D+ + AD+AMY+ K+ + Sbjct: 294 FTVAQKIIDVFRTPFVIDGYELFIT-TSIGISVYPHDGRSGDALVKNADVAMYRAKEQGR 352 Query: 330 KTPFVAHPALHS 341 + P +++ Sbjct: 353 NNCQLFAPEMNA 364 >UniRef50_Q0AB93 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0AB93_ALHEH Length = 693 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 103/194 (53%), Gaps = 2/194 (1%) Query: 147 AGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKI 206 AG I Y+ + + + +E + L A + DSLTGLPNR + L + +LA H Sbjct: 243 AGRITNYVGVFSDITKHKELHDRLHALANYDSLTGLPNRTLFLDRLRQIIALAEHRGFSF 302 Query: 207 MIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN 266 + ++ LD FK IND + H +GD L++VG+RL T + + + R+GGDEF+++ + E Sbjct: 303 SLLYLGLDRFKEINDTYSHTAGDQVLVEVGQRLQTCLREKDDLARMGGDEFVIL-VEGEE 361 Query: 267 ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 ++ ++ +R+ + + L D + ++ AS+GI + D D+ + A A+YQ K Sbjct: 362 LNVHTVAQRLLRTLENPI-LIDQEPFFVSASIGICHYPDDGADTDTLMATAQSALYQAKA 420 Query: 327 HKQKTPFVAHPALH 340 Q + P H Sbjct: 421 AGQGGFSLYSPDAH 434 >UniRef50_D1V9H9 Diguanylate cyclase with PAS/PAC sensor n=3 Tax=Frankia RepID=D1V9H9_9ACTO Length = 575 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 63/155 (40%), Positives = 88/155 (56%), Gaps = 2/155 (1%) Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 +S D LTGLPNR A+ + L AR +I + FIDLD FK IND GH +GD L Sbjct: 397 RSLHDGLTGLPNRTALLDRLARALRRARQDGCRIGVLFIDLDRFKEINDTHGHQAGDALL 456 Query: 233 IQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDL 291 + RL+ + G+V+GRL GDEF VV N E AD+ ++ +R + + GD + Sbjct: 457 RETAARLSAAVRPGDVVGRLAGDEFAVVCGNIERIADLEAIADRALAALEPPFRQGD-QV 515 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 AS+G+ PE D ++ L+AAD+AMY K+ Sbjct: 516 IGRTASIGLAVSSPELRDGETLLNAADLAMYAAKR 550 >UniRef50_C4L987 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L987_TOLAT Length = 1098 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 108/224 (48%), Gaps = 16/224 (7%) Query: 118 DGSFYGTLCAASSEK-----RQWSERAE-QVLQLFA---------GLIAQYIQKEALVEQ 162 DG FY + A E W+ R ++L + G I YI + Q Sbjct: 582 DGHFYQQMLQALDEHGFWRGEMWNRRQNGELLPMMTSINPVCDSNGEILYYISIYTDISQ 641 Query: 163 LREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDR 222 L+++ A L + D LTGLPNR + + L + A + ++ + +DLD+FK +ND Sbjct: 642 LKDSEARLEHMALHDPLTGLPNRAMLGQKLDSALQHAMLNSTRVALLMLDLDHFKNVNDS 701 Query: 223 FGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIR 281 FGH+ GD L QV RL + +V+ RLGGDEF V+ NN + D+S L ERI + Sbjct: 702 FGHHFGDELLHQVSARLKQQLRESDVVCRLGGDEFTVLLQNNPSPDDVSLLAERIIHALH 761 Query: 282 GEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 + L + G S+GI + A+ + AD AMY+ K Sbjct: 762 QPFLLSNAREVMIGTSIGISLYPEHGSTAEELMQQADTAMYRAK 805 >UniRef50_B2UJT5 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=6 Tax=Ralstonia RepID=B2UJT5_RALPJ Length = 652 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 89/170 (52%), Gaps = 1/170 (0%) Query: 160 VEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLI 219 + Q+REA + + D+LTGL NR A+ + L +L R ++ + F+DLD FK + Sbjct: 202 ITQIREAQQRIRHLATHDTLTGLLNRSALEDRLEHALALGRRNRSRVSVMFLDLDRFKNV 261 Query: 220 NDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQ 279 ND GH GD+ L +V RL + + + RLGGDEF+V+ + + + ERI Sbjct: 262 NDTLGHQFGDMLLREVAARLQACAREADTVARLGGDEFVVMLESLDAMGTRRVAERILSA 321 Query: 280 IRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQ 329 I +H+ +LY G S+GI + D + L AD AMY K+ + Sbjct: 322 IGAPFHIEGQELYL-GVSIGIAVAPRDGDDPHTLLRKADAAMYLAKERGR 370 >UniRef50_Q3SL48 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SL48_THIDA Length = 674 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 85/150 (56%), Gaps = 2/150 (1%) Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 D+LTGLPNR + + L + AR + + FIDLD FK +ND GH SGD + +VG Sbjct: 242 DTLTGLPNRMLLRDRLEQALARARRRGTLVGVMFIDLDRFKRVNDTLGHASGDELICEVG 301 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPG 295 +RL + ++ + + RLGGDEF+VV+ + I + E+++ + Y +G+ +L+ Sbjct: 302 QRLRAIARDEDTVARLGGDEFVVVANDARGVGQILHIVEKVRAALAAPYRVGERELFCC- 360 Query: 296 ASLGIVEVDPETTDADSALHAADIAMYQEK 325 +S+GI + D S L AD AMY K Sbjct: 361 SSIGISVFPNDGADCSSLLKNADTAMYHAK 390 >UniRef50_C8XD81 Diguanylate cyclase/phosphodiesterase n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XD81_NAKMY Length = 814 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/193 (34%), Positives = 95/193 (49%), Gaps = 7/193 (3%) Query: 142 VLQLFAGLIAQYIQ---KEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSL 198 ++ L+ QY+ AL L L Q++ D LTGLPNR + Sbjct: 336 IVTFLGVLVRQYLTIRDNAALTANLARRENQLHRQAFQDILTGLPNRALFTDRAAHALEQ 395 Query: 199 ARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFL 258 R + + F+DLD+FK +ND GH GD +I+V ERL + + + R GGDEF Sbjct: 396 HRQSMRPLSLLFVDLDDFKAVNDTLGHPVGDELVIRVAERLRGAIRASDTVARFGGDEFA 455 Query: 259 VVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE--TTDADSALHA 316 V++ E+AD L R+ + +R + LG+ L GAS+GI EV E T D Sbjct: 456 VLA-EGEDADGVELGSRLVEALRPRFVLGEHGLSI-GASIGIAEVPAEHPTPTLDDLFSR 513 Query: 317 ADIAMYQEKKHKQ 329 ADIAMY K+ + Sbjct: 514 ADIAMYAAKRAGK 526 >UniRef50_Q6REH3 Putative uncharacterized protein n=1 Tax=Rhodococcus sp. DK17 RepID=Q6REH3_9NOCA Length = 343 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 78/264 (29%), Positives = 122/264 (46%), Gaps = 16/264 (6%) Query: 65 PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGS--FY 122 P+ FT + A E PDR+G+ + L + + +P G+ + Sbjct: 83 PDTFTPGTESQPGYAAATEEIII---CPDRYGERRFSTEAMNARGLRSGVCVPIGAEPVW 139 Query: 123 GTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGL 182 G L A S+ R +S+R L+ ++ I++ EA AL QS D LTGL Sbjct: 140 GVLTAHSARPRDYSDREVMFLRSVTAVLTAAIRRI-------EAEEALRYQSLHDQLTGL 192 Query: 183 PNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTL 242 PNR + + + A H++ ID+D FK +NDR GH GD LI++ E+L ++ Sbjct: 193 PNRALVHQQIDAALDAAAGSEHRVAALLIDVDEFKSLNDRLGHAVGDDALIRLAEQLRSV 252 Query: 243 QQNGEVIGRLGGDEFLVVSLNNENADIS-SLRERIQQQIRGEYHLGDVDLYYPGASLGIV 301 + + + R+GGDEFL+V + + + +L RI G G + AS+GI Sbjct: 253 VRPADTVARIGGDEFLIVCPGTASVEEAIALATRITDLQVGADSAGRPLRFT--ASVGIA 310 Query: 302 EVDPETTDADSALHAADIAMYQEK 325 P+ T + + AD AMY K Sbjct: 311 LAGPQETR-QTLIRRADAAMYHAK 333 >UniRef50_Q5ZVT3 Inner membrane protein PLUS sensory box protein LssE n=6 Tax=Legionella pneumophila RepID=Q5ZVT3_LEGPH Length = 792 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 1/157 (0%) Query: 170 LIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGD 229 L Q+ DSLTGLPNR A+++ L + + LN + + F+D+DNFKLIND GH++GD Sbjct: 353 LAYQANHDSLTGLPNRTALYDRLDHAINYCKRLNTSLSVLFLDIDNFKLINDSLGHDAGD 412 Query: 230 LFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDV 289 + L + RL ++ + + R GGDEF+++ + E D+ + + I + + L Sbjct: 413 ILLYEFSRRLKGCIRHSDTVARFGGDEFVLLLMTTEPKDVILIAQNILKAVAQPIKLPTQ 472 Query: 290 DLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 ++ S+GI + DA + L +D AMY KK Sbjct: 473 EVIVT-TSIGISLFPKDGIDASTLLKNSDTAMYLAKK 508 >UniRef50_A5INK6 Diguanylate cyclase n=2 Tax=Thermotogaceae RepID=A5INK6_THEP1 Length = 215 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 63/199 (31%), Positives = 102/199 (51%), Gaps = 1/199 (0%) Query: 135 WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTT 194 ++E + ++++LFA ++ + E+L E L SY D LTGLPNRR + E Sbjct: 15 FNEVSLELVRLFATYTKILFERLKVEEELAEKTRLLEVFSYYDPLTGLPNRRLMEELSKK 74 Query: 195 LFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGG 254 L +LA+ +I + F+DL FK IND FGH +GD L +V RL + + +VI R GG Sbjct: 75 LLALAKREGKEIAVVFLDLSGFKKINDTFGHEAGDQILKEVSTRLKRVLRENDVIARFGG 134 Query: 255 DEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSAL 314 DEF+ + + I ++ RI + + + G + G+ + + ++ L Sbjct: 135 DEFVFIIYDCGKDCIETVLRRILNSLEKPLDIEGQKVQISG-NFGVAFYPKDGEEFNNLL 193 Query: 315 HAADIAMYQEKKHKQKTPF 333 AD AMY K++K+ F Sbjct: 194 RKADFAMYLAKRNKEHVRF 212 >UniRef50_A7BSH2 Diguanylate cyclase/phosphodiesterase n=1 Tax=Beggiatoa sp. PS RepID=A7BSH2_9GAMM Length = 604 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 99/183 (54%), Gaps = 2/183 (1%) Query: 150 IAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIA 209 I QY+ + + ++ ++ Q++ D+LT LPNR + L A+ ++ + Sbjct: 416 IVQYVAVFTDITKRKQNEELILHQAHHDALTNLPNRILFVDRLKQALLTAKRHQGRVAVM 475 Query: 210 FIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN-AD 268 FIDLD FK +ND GH+ GDL L +V +RL + + + RLGGDEF VV +N +D Sbjct: 476 FIDLDRFKSVNDTLGHDFGDLLLKEVAQRLIACIRESDTVARLGGDEFTVVLTQIQNISD 535 Query: 269 ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHK 328 I + +R+ + + + D + + G S+GI + +A++ + ADIAMYQ K+ Sbjct: 536 IRIIAQRMLKSLSQPFIQKDNEAFI-GGSIGIAFFPKDGQEAETLVKKADIAMYQAKQEG 594 Query: 329 QKT 331 + T Sbjct: 595 RNT 597 >UniRef50_C0QA93 Signal transduction family protein (GGDEF domain protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QA93_DESAH Length = 629 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 74/198 (37%), Positives = 102/198 (51%), Gaps = 22/198 (11%) Query: 141 QVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLAR 200 +VLQL L ++ E E L ++ DSLTGLPNR ENLTT A Sbjct: 150 EVLQLAHALTRKW-------ELNNEIQGRLNQLAFYDSLTGLPNRTLFIENLTTTLDKAH 202 Query: 201 HLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERL-------NTLQQN--GEVIGR 251 HK + +IDLDNFK IND GH+ GD L +RL +T+ ++ GE++ R Sbjct: 203 RYKHKAALLYIDLDNFKRINDTLGHSIGDDLLKATSKRLLKCLRTSDTVSRSPAGEMVAR 262 Query: 252 LGGDEFLVV---SLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETT 308 LGGDEF V+ E+A + +L RI +Q+ HLG+ + S+GI + Sbjct: 263 LGGDEFTVILPEVTRAEHAGVVAL--RIAKQLAEPLHLGNHQVIVT-PSIGISLFPQDGE 319 Query: 309 DADSALHAADIAMYQEKK 326 D ++ L ADIAMY K+ Sbjct: 320 DIETLLKNADIAMYFSKR 337 >UniRef50_C6X7I8 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6X7I8_METSD Length = 821 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 100/173 (57%), Gaps = 4/173 (2%) Query: 154 IQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDL 213 +QK+ + ++R+ AL Q+ D+LTGL NR + E + S AR N +AFID+ Sbjct: 371 VQKD--ITEIRQYQEALERQANYDTLTGLANRNLLKERMQQAISEARRHNWTFSVAFIDI 428 Query: 214 DNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEF-LVVSLNNENADISSL 272 DNFK +ND GH++GD + +G+RL + ++G+ + RLGGDEF L+++ + + I ++ Sbjct: 429 DNFKRVNDSMGHSAGDELIRLLGQRLQSCLRDGDTVARLGGDEFVLLLTSQSLDESIHTV 488 Query: 273 RERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 +RI+ I + + L S+G+ + +AD+ L AD AMYQ K Sbjct: 489 VQRIRNTIINPFIITGRQLTV-TCSIGLANFPHDGRNADTLLSNADSAMYQAK 540 >UniRef50_C6MBX5 Diguanylate cyclase/phosphodiesterase n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MBX5_9PROT Length = 891 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 59/166 (35%), Positives = 95/166 (57%), Gaps = 4/166 (2%) Query: 164 REANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRF 223 +EA +I + D+LTGLPNR + + + + L ++ + FIDLD+FK IND Sbjct: 442 KEAEKRIIEMATHDALTGLPNRYLLRDRIEQVLVHDTRLQRQMAVLFIDLDHFKTINDSL 501 Query: 224 GHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNN--ENADISSLRERIQQQIR 281 GH GDL L V +RL + +N + + R GGDEF+VV LN+ E+ D + + ++I Sbjct: 502 GHEIGDLLLKAVADRLKSCVRNEDTVARQGGDEFIVV-LNSIAESLDAAKVAQKILDSFA 560 Query: 282 GEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKH 327 +H+ +L+ G S+GI + +A++ L +D+AMY KK+ Sbjct: 561 LPFHIHKNELHIDG-SIGIAVFPDDGVNAETLLKNSDVAMYHAKKN 605 >UniRef50_B9Z0Y0 Diguanylate cyclase n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z0Y0_9NEIS Length = 528 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 59/168 (35%), Positives = 99/168 (58%), Gaps = 4/168 (2%) Query: 159 LVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKL 218 LV +L EAN+ L + TD+LTGLPNRRA+ E L +R + + +D+D+FK+ Sbjct: 339 LVNELAEANSKLAHLARTDTLTGLPNRRALEEALEQQLQRSRRNGEQASLVLLDIDHFKV 398 Query: 219 INDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQ 278 +NDR+GH++GD + +G+ ++ +N +V GR GG+EFLVV N + ++ ER++ Sbjct: 399 VNDRYGHDAGDAVIRALGKAMSETIRNVDVAGRWGGEEFLVVLANVDEEGAAAFAERLRT 458 Query: 279 QIRGE-YHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 ++ G++ + Y SLG+ + T ++ L AD A+Y+ K Sbjct: 459 RVESSTVAHGELHVRYT-ISLGVAPLS--TPHREAWLKRADEALYRAK 503 >UniRef50_A6Q2C3 Signal transduction response regulator n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q2C3_NITSB Length = 765 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 88/154 (57%), Gaps = 2/154 (1%) Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 +Y D LT LPNR + + L L +A+ + + F+D+DNFK +ND +GH GD LI Sbjct: 336 AYNDPLTSLPNRVSFQDILEKLSKIAQRSKERFALIFLDIDNFKFVNDTYGHEIGDKLLI 395 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLY 292 + L ++ ++I R+GGDEF+V+ E D + + E+I++ + EY G+++ + Sbjct: 396 DIATILKETLRSSDLIFRIGGDEFVVLIPKVETKDSLDIVLEKIKESVAKEYRYGNIN-F 454 Query: 293 YPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 SLGI ++ D ++ ADIAMY+ KK Sbjct: 455 SVSCSLGIAIFPDDSDDIETLTRYADIAMYEAKK 488 >UniRef50_C5V1X8 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V1X8_9PROT Length = 714 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 98/181 (54%), Gaps = 7/181 (3%) Query: 152 QYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFI 211 ++ Q++ +LR+A + ++ D LTGLPNR + + L S + I + I Sbjct: 262 EHTQQQLHANELRQAAKKINELAFFDQLTGLPNRVLLLDRLKQAMSASTQNRCHIALLLI 321 Query: 212 DLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVS--LNNENADI 269 DLD FK IN+ GH+ GD L QV ERL+ ++G+ + RLGGDEF+V+S LN A Sbjct: 322 DLDKFKTINETLGHDMGDQLLKQVAERLSHCVRSGDTVARLGGDEFVVMSANLNTHEALA 381 Query: 270 SSLRERIQQQIRG----EYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 ++ E I ++I YH D ++ S+G+ E TD + L A++AMY+ K Sbjct: 382 ATQAENIGEKILAALNRTYHF-DAIPHHSTPSIGVTLFCGEQTDVEILLKQAELAMYKSK 440 Query: 326 K 326 + Sbjct: 441 E 441 >UniRef50_B1ZF36 Diguanylate cyclase n=1 Tax=Methylobacterium populi BJ001 RepID=B1ZF36_METPB Length = 407 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 64/175 (36%), Positives = 90/175 (51%), Gaps = 3/175 (1%) Query: 166 ANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARH--LNHKIMIAFIDLDNFKLINDRF 223 A AL Q+ LTGLPNR + F+ T S R+ +H + + ++DLD FK +ND + Sbjct: 216 AERALRHQALHCGLTGLPNRTS-FDQALTAASAGRNDDEDHAVALLYLDLDGFKAVNDTY 274 Query: 224 GHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGE 283 GH +GD L QV RL + +V+ RLGGDEF V+ A + I + Sbjct: 275 GHATGDTLLQQVARRLRDVVMAADVVARLGGDEFAVLLTGRRAASAERVAGAIIAAVGLP 334 Query: 284 YHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPA 338 Y LG L G S+GI E D ++D+ + L AD A+Y K+ + T A PA Sbjct: 335 YDLGHGTLISIGVSVGIAETDACSSDSHALLVRADRALYTAKERGKGTFHRARPA 389 >UniRef50_B8HS15 Diguanylate cyclase with GAF sensor n=5 Tax=Bacteria RepID=B8HS15_CYAP4 Length = 314 Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 113/231 (48%), Gaps = 13/231 (5%) Query: 101 ARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAE-QVLQLFAGLIAQYIQKE-A 158 R L I ++ P+ DGS +GT+CA + S AE ++++ GL+ ++ E Sbjct: 92 GRQLTIGAYIGVPLKRQDGSLFGTMCAIDPTTQPHSITAELPLIEMLGGLLCTVLELELK 151 Query: 159 LVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKL 218 EQ+R+ A A++ TDSLT L NRR + L + + H + IDLD K Sbjct: 152 AAEQIRQIERAQ-AEALTDSLTSLYNRRGWDQLLAAEETRCQRYGHPACVVAIDLDGLKQ 210 Query: 219 INDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQ 278 IND GH GD + + G + + + +V+ R+GGDEF+V+ + + +L ERI Sbjct: 211 INDTQGHGKGDELICRAGRAIRKVLRQQDVLARIGGDEFVVLGVECDALSAKNLIERIYA 270 Query: 279 QIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQ 329 L V + AS+G+ DP A+ AD AMY K+ ++ Sbjct: 271 S------LSAVQVE---ASVGLAMRDPRQGLC-HAVEQADQAMYACKQTRK 311 >UniRef50_C6AS31 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=6 Tax=Rhizobium RepID=C6AS31_RHILS Length = 781 Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 70/234 (29%), Positives = 120/234 (51%), Gaps = 18/234 (7%) Query: 104 LGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQL 163 G + STPI + GT S E R+ ++ ++ L + I+++ + +++ Sbjct: 291 FGFRSCWSTPIATSQNNVLGTFALYSREVRRPTDHEMTLVALATHIAGIAIERKRVDDRI 350 Query: 164 REANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRF 223 ++ D LTGLPNR + E L ++ AR N K+ +A+IDLDNFK IND Sbjct: 351 H-------FMAHHDDLTGLPNRAFLKERLASILDQARRNNRKVTVAYIDLDNFKDINDGR 403 Query: 224 GHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD------ISSLRERIQ 277 GH +GD L ++ R+ + +++ RLGGDEFLVV ++ + D + L++ I Sbjct: 404 GHAAGDEVLKEIATRMANSVRASDMVVRLGGDEFLVVLVHQSSHDAGITRRLRELQKAIN 463 Query: 278 QQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKT 331 + IRG G++ + +S+G+ + ++ L AD AMY+ K+ + T Sbjct: 464 RPIRGAD--GEITIT---SSIGVAAFPFDGATSEELLANADRAMYRAKELGRNT 512 >UniRef50_A3CZX0 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase n=12 Tax=Shewanella RepID=A3CZX0_SHEB5 Length = 577 Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 98/173 (56%), Gaps = 2/173 (1%) Query: 155 QKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLD 214 Q+ ++ LR ++ L + DSLT L NR L + A+ + + + +DLD Sbjct: 121 QRSSMALALRNSHQKLKELAEHDSLTKLVNRYGFELCLNRAIARAKRCHDYLAVILLDLD 180 Query: 215 NFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSL-R 273 +FK IND GH +GD+ L++V RL+ + ++G++I RLGGDEF+V+ +N+ + Sbjct: 181 DFKAINDTLGHQTGDVLLLKVAARLSEVLRDGDIIARLGGDEFVVLVTDNDYKYFPMIVA 240 Query: 274 ERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 R+ + E+ LGD D+ GAS+G+ + +++ + ADIAMY+ KK Sbjct: 241 NRLLKVFEDEFCLGDNDVLI-GASIGVAFYNEAASNSSELMKCADIAMYRAKK 292 >UniRef50_B9ZNJ0 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Gammaproteobacteria RepID=B9ZNJ0_9GAMM Length = 706 Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 98/181 (54%), Gaps = 5/181 (2%) Query: 164 REANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRF 223 +E+ A + Q+Y D LT LPNR + + + A+ H + + FIDL+ FK+IND Sbjct: 265 KESEAFINFQAYHDLLTRLPNRALFRDRVDVAIAQAQRQGHPLAVMFIDLNRFKVINDSL 324 Query: 224 GHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEF--LVVSLNNENADISSLRERIQQQIR 281 GH GD L V +RL + G+ + R GGDEF L+ ++ + A + + E+I + + Sbjct: 325 GHTIGDRLLQAVAQRLLGCIRKGDTLSRFGGDEFTLLLPQISRQEAAV-DVAEKILESLN 383 Query: 282 GEYHLGDVDLYYPGASLGIVEVDPETTDA-DSALHAADIAMYQEKKHKQKTPFVAHPALH 340 +HLG Y GAS+GI + PE D ++ + ADIAMY+EK + + P +H Sbjct: 384 EPFHLGGDHELYVGASIGIA-IYPEGGDTLETLIRHADIAMYREKNTGKNGIRLFAPEMH 442 Query: 341 S 341 Sbjct: 443 G 443 >UniRef50_A3YDY6 Sensory box sensor/GGDEF/EAL domain protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YDY6_9GAMM Length = 878 Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 63/185 (34%), Positives = 96/185 (51%), Gaps = 10/185 (5%) Query: 144 QLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLN 203 + + G IA +K ++A AL Q+ DSLTGL NR E ++ + ++ Sbjct: 416 EYYEGFIANITEK-------KKAEIALKNQAQMDSLTGLLNRATFVEKMSDY--IKKNSA 466 Query: 204 HKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN 263 HK I FIDLD FK +ND++GH+ GD L++ RL EVI RLGGDEF V L Sbjct: 467 HKSAIFFIDLDKFKTVNDQYGHHVGDELLLEFSRRLKACFSENEVISRLGGDEFAVFLLG 526 Query: 264 -NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMY 322 + ++ L +++ +R + + + AS+GI +D A L AD+AMY Sbjct: 527 VTDLPQLNKLADKVVAGLRKPFAFSNGFNFKISASIGISMLDETVKSASEGLKQADMAMY 586 Query: 323 QEKKH 327 + K++ Sbjct: 587 EVKRN 591 >UniRef50_C5S5K8 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S5K8_CHRVI Length = 1069 Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 98/193 (50%), Gaps = 1/193 (0%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 G + Y+ + QL+++ A L + D LT LPNRR + L A ++ Sbjct: 612 GRPSHYVGVMTDISQLKQSEARLEHLVHYDPLTNLPNRRLVQSRLEHALERADRQGGRVA 671 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA 267 + F+DLD FK +ND GH SGD+ L + RL+ + + + RLGGDEFLV+ N + Sbjct: 672 VLFVDLDRFKTVNDSLGHPSGDVLLELLARRLSERVREDDTLARLGGDEFLVLLENLQRP 731 Query: 268 -DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 D +++ E + ++ +HL + Y GAS+GI + + AD+AMYQ K+ Sbjct: 732 EDAAAVAESLLSLLQQPFHLPNGQELYVGASIGISLYPDDGHTVTDLIQHADVAMYQAKE 791 Query: 327 HKQKTPFVAHPAL 339 + T P+L Sbjct: 792 EGRNTYRFYTPSL 804 >UniRef50_A4G3M6 Putative two-component response regulator n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G3M6_HERAR Length = 818 Score = 101 bits (251), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 97/180 (53%), Gaps = 2/180 (1%) Query: 147 AGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKI 206 G + ++ V Q++ L Q+ D+LTGL NR + E AR +H + Sbjct: 362 GGAVGHFVGVLYDVTQIKRYQEDLEHQANYDTLTGLANRNLLNERTQQALLQARRHDHFL 421 Query: 207 MIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN 266 + FIDLDNFKL+ND GH +GD + VG RL T ++G+ + R+GGDEF+++ N Sbjct: 422 SLVFIDLDNFKLVNDSMGHGAGDELIANVGSRLQTCVRDGDTVARIGGDEFVLLLTNQSV 481 Query: 267 ADISS-LRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 +D ++ + +RIQ ++ + ++ S+G+ + D++S L AD AMY+ K Sbjct: 482 SDSNAGVMQRIQAELIKPMWIRGQEIVVT-CSMGVARFPEDGEDSESLLANADTAMYRAK 540 >UniRef50_A4A7P9 Sensory box/GGDEF domain/EAL domain protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4A7P9_9GAMM Length = 834 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 70/213 (32%), Positives = 110/213 (51%), Gaps = 18/213 (8%) Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 DGS + L S+ + A + +Q + GL + +++E L + D Sbjct: 350 DGSLFVELITISAIRD-----ANEAVQQYVGLFTD-------ITRMKEHQKQLEHAAKFD 397 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 SLT LPNR + + L+ S ++ K+ IA+IDLD FK INDR GH +GDLFL+Q+ Sbjct: 398 SLTDLPNRILLGDRLSMALSQSQRRGSKVAIAYIDLDKFKAINDRLGHAAGDLFLVQLSR 457 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNNENAD---ISSLRERIQQQIRGEYHLGDVDLYYP 294 ++ T + + + R+GGDEF V+L + AD + L R+ + I+ + L Sbjct: 458 QMKTALRETDTLARIGGDEF--VALIGDVADKTECAVLLRRLSEAIKTPVTINGEALSV- 514 Query: 295 GASLGIVEVDPETTDADSALHAADIAMYQEKKH 327 AS+G+ ++ DAD L AD AMY K++ Sbjct: 515 SASIGVTLYPEDSCDADQLLRHADQAMYAAKQN 547 >UniRef50_Q1Q678 Putative uncharacterized protein n=2 Tax=Bacteria RepID=Q1Q678_9BACT Length = 774 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 104/207 (50%), Gaps = 9/207 (4%) Query: 134 QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLT 193 QWSE +L + + ++ I + E+ + +Y D+LT LPNR +++ L Sbjct: 575 QWSEDDVTLLNIMSEILGNAIAR-------VESEKLISHMAYHDALTKLPNRNLLYDRLK 627 Query: 194 TLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLG 253 + A + + I +DLD FK+IND FGH GDL L V ERL + G+ I R+G Sbjct: 628 VAMAHAIRSKNMVAIIMLDLDGFKMINDSFGHQMGDLLLKAVAERLMQCLREGDTIARMG 687 Query: 254 GDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADS 312 GDEF++V + + D + ++I + R + + +L + AS+GI D++S Sbjct: 688 GDEFIIVIPDLAQTEDAALFAQKILEAFRLPFLIEKHEL-HTTASIGITIFPLYANDSES 746 Query: 313 ALHAADIAMYQEKKHKQKTPFVAHPAL 339 AD+A+Y K + T + P + Sbjct: 747 LFKQADVALYLSKAKGKNTYQIYKPGV 773 >UniRef50_C6P1Q1 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P1Q1_9PROT Length = 1135 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 118/244 (48%), Gaps = 24/244 (9%) Query: 109 FLSTPIHLPDGSFYG----TLCAASSEKRQ-WSER----------AEQVLQLFAGLIAQY 153 LS+ +H D FY TL A + K + W++R A ++ G++ Y Sbjct: 622 ILSSGLH--DSHFYAAMWNTLVATGAWKGEIWNKRKNGEVYPERLAITAVKDARGVVINY 679 Query: 154 IQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDL 213 + + + + A + + ++ D LTGLPNRR + + L + + F+DL Sbjct: 680 VASLSDITLHKAAEDEIRSLAFFDPLTGLPNRRLLMDRLQQALVASSRSGKAGALLFLDL 739 Query: 214 DNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVV--SLNNENADISS 271 DNFK +ND GH+ GDL L QV +RL + G+ + R+GGDEF+V+ L+ E+ + +S Sbjct: 740 DNFKNLNDTLGHDIGDLLLQQVAQRLKNCVREGDTVARIGGDEFVVMLEDLSAESIEAAS 799 Query: 272 LRE----RIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKH 327 E +I + YHL ++ + S+G D D ADIAMYQ KK Sbjct: 800 QTEAVGWKIISTLNKPYHLEKFEV-HSTPSIGATLFDSRPQIIDDLFKQADIAMYQAKKA 858 Query: 328 KQKT 331 + T Sbjct: 859 GRNT 862 >UniRef50_C1D6C2 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D6C2_LARHH Length = 1113 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 56/154 (36%), Positives = 87/154 (56%), Gaps = 2/154 (1%) Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 DSLTGL NR A+ E L + + AR H + ++DLD FK IND GH +GD LI+V Sbjct: 679 DSLTGLYNRAALIERLGDVLAQARRQPHVGAVMYLDLDRFKQINDTLGHEAGDALLIEVA 738 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPG 295 R+ ++ + G+ +GR+GGDEF+V+ E D +++ +++ + + L + P Sbjct: 739 RRIRSVVRTGDAVGRMGGDEFVVLLARLEYPRDAAAVADKLLAALLEPFVLSGQRVESP- 797 Query: 296 ASLGIVEVDPETTDADSALHAADIAMYQEKKHKQ 329 AS+G+ + DAD+ L AD AMY K + Sbjct: 798 ASIGVAMFPQDGEDADTLLRHADAAMYDVKTQGR 831 >UniRef50_C6RM97 Gaf/ggdef-domain containing protein n=5 Tax=Acinetobacter RepID=C6RM97_ACIRA Length = 314 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 81/272 (29%), Positives = 136/272 (50%), Gaps = 23/272 (8%) Query: 69 TVSWDYSLCKRAIDENCFF----SDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGT 124 ++W +LC + + E S ++P + + + + I ++ P+ DGS +GT Sbjct: 57 VLNWTDTLCSQMVTETVPRIVPRSRDIP-LYANAPINKQVNIEAYIGQPLLNEDGSLFGT 115 Query: 125 LCAASSEKRQWS--ERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGL 182 LCA + + S + AE +++LFA L++ +Q E + + L A++ DSLT L Sbjct: 116 LCAVDPQPQPESILQYAE-MIELFAQLLSYILQTELRENEKIRQHERLEAEALRDSLTEL 174 Query: 183 PNRRAIFENLTTLFS--LARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLN 240 NRRA + NL T RH H I +DL+N K++ND GH SGD + + L Sbjct: 175 YNRRA-WNNLVTAEEDRCKRH-GHPASILIVDLNNLKIVNDSLGHTSGDELIQKTASVLR 232 Query: 241 TLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGI 300 + +++ RLGGDEF ++S+ N+ +L RIQ+ + +D A++G+ Sbjct: 233 ASVRRKDIVARLGGDEFGILSIENDQEGALALFHRIQEAFKE----AGID-----AAIGV 283 Query: 301 VEVDPETTDADSALHAADIAMYQEKKH-KQKT 331 P +A+ AAD M++ K+ K KT Sbjct: 284 ASRRPHHGLNKAAI-AADKNMFEHKRSGKTKT 314 >UniRef50_B1KMM4 Diguanylate cyclase n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KMM4_SHEWM Length = 328 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 74/271 (27%), Positives = 123/271 (45%), Gaps = 31/271 (11%) Query: 77 CKRAIDENCFFSDE---------------VPDRWGDC-IAARNLGITTFLSTPIHLPDGS 120 C++ +D N F D V D DC + ++L PI PDGS Sbjct: 66 CQKQLDTNQFNMDHNKFCLNVITESQILYVKDIREDCRYQKEEMPYLSYLGLPITWPDGS 125 Query: 121 FYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLRE--ANAALIAQSYTDS 178 +G+L ++ + + L + KE + LR L+ SYTD Sbjct: 126 IFGSLSVLDTQTTNYPDEYIDALSVI---------KEVIDSDLRHLYKEDQLLKMSYTDP 176 Query: 179 LTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGER 238 LT + NRR + + L + LAR L ++++ + DLD FK ND++GH+ GD L Sbjct: 177 LTQIYNRRGLIDLLQSTQDLARRLKRQLILIYFDLDKFKTANDKYGHDMGDKLLNLFAMN 236 Query: 239 LNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASL 298 L ++ +++ R GGDEF+V+ + I +R+ Q + + +L ++ Y A Sbjct: 237 LKKNSRSCDLVARWGGDEFIVIIHAEDIESIKVYIDRMNQHLADQTYLPEIHFSYGYA-- 294 Query: 299 GIVEVDPETTDADSALHAADIAMYQEKKHKQ 329 +++ D +T A L AD MY+ K+ K+ Sbjct: 295 -VIKPDDSSTLA-QLLSTADENMYRNKQLKR 323 >UniRef50_B4RZW0 GGDEF domain-containing PAS signal transduction protein n=3 Tax=Alteromonadales RepID=B4RZW0_ALTMD Length = 794 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 114/234 (48%), Gaps = 12/234 (5%) Query: 95 WGDC--IAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQ 152 W D IAAR G+ S PI GT A + + E+V+ LI Q Sbjct: 295 WHDYKEIAAR-AGVAACWSQPIRGASTEVIGTF--AIYHRYKAVPTPEEVV-----LIEQ 346 Query: 153 YIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFID 212 + ++ + A+ + Q+ D+LTGLPNR + ++L A ++ +AF+D Sbjct: 347 FAHIASIAIERERASELIWKQANFDTLTGLPNRNLMLDHLQLALKTADREGDRVAVAFLD 406 Query: 213 LDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN-ADISS 271 LDNFK IND GH+ GD LI+ ER+ + + + RLGGDEF+V+ + E + I Sbjct: 407 LDNFKDINDTLGHDVGDQLLIECAERIKQCLRANDTVSRLGGDEFVVILNSIETLSSIDI 466 Query: 272 LRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 + ++I I Y L +V+ + ASLG+ + D L AD AMY K Sbjct: 467 VVQKILDVILKPY-LINVERVHTSASLGVTLYPDDARDIKGLLKNADQAMYGAK 519 >UniRef50_C7HYH8 Diguanylate cyclase with GAF sensor n=1 Tax=Thiomonas intermedia K12 RepID=C7HYH8_THIIN Length = 720 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 67/227 (29%), Positives = 115/227 (50%), Gaps = 7/227 (3%) Query: 110 LSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAA 169 L+TP+ G+ +G L S + + + E+ + + A L+ + + + E+L Sbjct: 492 LATPVWR-GGALWGVLVFTSPQAQAFDEQTIALCEQVAALLGYGLDELDVKERLSHLQRV 550 Query: 170 LIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGD 229 ++ D+LTGLPNR A+ + L + + AR + IDLD FKLIND +GH++GD Sbjct: 551 EAHRARHDTLTGLPNRYALEQYLPEVIARARRQGSLFAVGMIDLDGFKLINDTWGHSAGD 610 Query: 230 LFLIQVGERLNTLQQNGEVIGRLGGDEFLVV-----SLNNENADISSLRERIQQQIRGEY 284 L ++ RL +Q+ + + RLGGDEF+VV L + +S+ +R++Q + + Sbjct: 611 RVLRELTRRLQAVQRQTDFLVRLGGDEFVVVMEDLNPLEVQTGYANSV-QRLRQAVAAPF 669 Query: 285 HLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKT 331 + S+GI + DAD+ + AD AMY K + + Sbjct: 670 DIAPNVQLPIDMSIGISAYPLDAQDADTLMRLADKAMYAAKPKNRTS 716 >UniRef50_Q3SK01 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor(S) n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SK01_THIDA Length = 1059 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 62/174 (35%), Positives = 92/174 (52%), Gaps = 9/174 (5%) Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 ++ D LTGLPNR + + L + RH ++ IDLDNFK +ND GH GDL L Sbjct: 617 AFYDPLTGLPNRELLGDRLQHAMQV-RHGQVGALL-LIDLDNFKTLNDTLGHAMGDLLLQ 674 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVV--SLNNENADISSLRERIQQQIRGE----YHLG 287 Q+ +RL T + G+ + R+GGDEF++V L+ D SL R+ ++I + L Sbjct: 675 QIAQRLQTCLRKGDTLARVGGDEFVIVLEGLSASPGDAGSLATRVGEKILASFARPFQLA 734 Query: 288 DVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 D +++ AS+GI + T D AD+AMYQ K H + PA+ + Sbjct: 735 DY-VHHCTASIGITLFNDRPTTLDELRKRADLAMYQAKAHGRNALRFFDPAMQA 787 >UniRef50_Q2RU51 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RU51_RHORT Length = 764 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 100/182 (54%), Gaps = 8/182 (4%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 G I ++ + V + + + L ++ D+LTGLPNR+ + + ++T LAR + ++ Sbjct: 287 GKITNFVAVKDDVTERKAIESELYHRANYDALTGLPNRQLLLDRVSTALDLARRHDRRVA 346 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NEN 266 + F+D+D FK IND GH +GD+ L Q RL + + + +GRLGGDEFLVV+ Sbjct: 347 VMFMDIDRFKQINDSMGHAAGDVLLKQAASRLAAVLRPQDTLGRLGGDEFLVVAPGLRWE 406 Query: 267 ADISSLRERIQQQIRGEYHLGDVDLYYP---GASLGIVEVDPETTDADSALHAADIAMYQ 323 ++ ++L R+ + R + + ++Y G SLG V + T A + + AD AMY Sbjct: 407 SEATALASRLLEVARRPFTIDGREVYVSVSIGVSLGPV----DGTTAQALMRNADAAMYL 462 Query: 324 EK 325 K Sbjct: 463 AK 464 >UniRef50_B3PL46 Response regulator n=2 Tax=Proteobacteria RepID=B3PL46_CELJU Length = 587 Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 64/187 (34%), Positives = 103/187 (55%), Gaps = 2/187 (1%) Query: 156 KEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDN 215 + L QL +++ L + + DSLTGL NR E+L + A+ + ++ + F+DLDN Sbjct: 123 RHQLERQLYDSHQRLRSLAENDSLTGLANRYYFDESLRAAIARAKRQHDQLALLFLDLDN 182 Query: 216 FKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD-ISSLRE 274 FKLIND GH GD L +V +RL + + G+V+ RLGGDEF +++ + + + IS L + Sbjct: 183 FKLINDSLGHVVGDEVLKEVAQRLLNVVRAGDVVCRLGGDEFAILAHHFDTEESISQLAQ 242 Query: 275 RIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFV 334 RI +R +G+ + + S+GI A L AAD+AMY+ K+ + Sbjct: 243 RILDDLRSPIVIGNTE-HCISTSIGIATYPDAGNSASDLLKAADMAMYRAKQDGRNNFQF 301 Query: 335 AHPALHS 341 PA+ + Sbjct: 302 FSPAMQA 308 >UniRef50_A3JAE8 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain n=1 Tax=Marinobacter sp. ELB17 RepID=A3JAE8_9ALTE Length = 828 Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 90/167 (53%), Gaps = 14/167 (8%) Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 +Y DSLTGLPNR E L + SLA + ++ + F+DLDNFK +ND GH GD L+ Sbjct: 378 AYHDSLTGLPNRFRAHETLRCMISLAHRESRRMAVLFLDLDNFKRVNDTLGHQVGDQLLM 437 Query: 234 QVGERLNTL------------QQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQI 280 ++ RL + Q +V+ RLGGDEF+V+ N + + D + + RI + Sbjct: 438 EMAIRLQVVLRAEDVIHQEVSQNTLDVLARLGGDEFVVLLSNVSSSRDAAKVASRILDIM 497 Query: 281 RGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKH 327 + ++ + ++ Y G S+GI + +D D + AD AMYQ K Sbjct: 498 KLPFYFNENEI-YSGCSIGISLFPSDGSDVDDLIKRADAAMYQAKSQ 543 >UniRef50_A1VEL8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=3 Tax=Desulfovibrio vulgaris RepID=A1VEL8_DESVV Length = 926 Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 66/197 (33%), Positives = 108/197 (54%), Gaps = 5/197 (2%) Query: 132 KRQWSERAEQVLQLFAGLIAQYI-QKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFE 190 +++W + ++ AG +A + Q E + EQ ++ A L ++ D+LTGLPNR + Sbjct: 451 EQRWGRQIVTAVRDVAGDVAFVLAQVEDITEQ-QQTEARLTRMAFHDALTGLPNRVLFLD 509 Query: 191 NLTTLFSLAR-HLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVI 249 + T AR H + + F+DLD FK++ND GH +GD L Q RL + + + Sbjct: 510 RVETALRRARRHETYHFAVLFLDLDRFKVVNDSLGHKAGDELLRQFARRLEPCLREVDTM 569 Query: 250 GRLGGDEFLVVSLNNENADIS-SLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETT 308 R GGDEF ++ + + D S ++ ER+Q +R + + +++Y GAS+G V + T Sbjct: 570 ARFGGDEFAILLDDMSDVDESVNIIERLQAALRQPFLVQGMEVYT-GASIGAVLRARDYT 628 Query: 309 DADSALHAADIAMYQEK 325 A+ L ADIAMY+ K Sbjct: 629 QAEDILRDADIAMYRAK 645 >UniRef50_C4L753 Diguanylate cyclase/phosphodiesterase with PAS/PAC and MHYT sensor(S) n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L753_EXISA Length = 819 Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 59/152 (38%), Positives = 91/152 (59%), Gaps = 5/152 (3%) Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 Y D LTGLPNRR + L L L + + + + +IDLDNFK+INDRFGH+ GD FL Q Sbjct: 393 YLDPLTGLPNRRLFSDRLDAL--LGQSQSEQFALYYIDLDNFKVINDRFGHSIGDQFLKQ 450 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYP 294 V R+ + Q + + RLGGDEF+++S + ++ + + + + + L + ++ + Sbjct: 451 VTTRIQSTIQKTDTLARLGGDEFIILSPDTKSNLAAHRAQELINVLHPPFELENEEV-FT 509 Query: 295 GASLGIVEVDPETTD-ADSALHAADIAMYQEK 325 GAS+GI + P D A+ + ADIAMY+ K Sbjct: 510 GASIGI-SLHPSDGDTAEELIKNADIAMYRAK 540 >UniRef50_Q2BIE6 Sensory box/GGDEF/EAL domain protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BIE6_9GAMM Length = 711 Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 59/167 (35%), Positives = 91/167 (54%), Gaps = 2/167 (1%) Query: 160 VEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLI 219 + + +E ++ Q++ DSLT LPNR + L L AR K+ + FIDLD+FK + Sbjct: 273 ITEQKEQEKKILHQAHFDSLTDLPNRFLALDRLNLLTKEARRTRKKLAVLFIDLDDFKKV 332 Query: 220 NDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQ 278 ND GH GD LIQ +RL ++ ++ + IGRLGGDEF+V+ N +E D+ + E++ Sbjct: 333 NDTLGHALGDKLLIQASQRLKSVIRSSDTIGRLGGDEFIVIINNLDEALDVRPIAEKLLD 392 Query: 279 QIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 R + + +L S+GI + + + L AD AMY K Sbjct: 393 NFRDVFKVESRELLLT-TSIGISIYPDDGEEPNVLLRNADSAMYHSK 438 >UniRef50_A9BNX4 Diguanylate cyclase/phosphodiesterase n=3 Tax=Comamonadaceae RepID=A9BNX4_DELAS Length = 916 Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 63/172 (36%), Positives = 92/172 (53%), Gaps = 7/172 (4%) Query: 160 VEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLI 219 V +R A A + + ++ D LT LPNRR + + L LA + F+DLD FK++ Sbjct: 453 VTDIRLATAEIESLAFYDPLTSLPNRRLLLDRLAQATVLAAREGWTGALLFLDLDQFKML 512 Query: 220 NDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVV--SLNNENADISSLRERIQ 277 ND GH GD L QV RL + ++ + + RLGGDEF+V+ L++E A+ ++L +RI Sbjct: 513 NDTLGHEVGDQLLQQVAHRLRSAVRSSDTVARLGGDEFVVMLCELSHEPAEAATLAQRIG 572 Query: 278 QQIRGE----YHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 ++I Y LG L+ S+G + A L ADIAMYQ K Sbjct: 573 EKILARLNQSYVLG-AHLHRSACSIGATLFGRQPQSAAELLKQADIAMYQIK 623 >UniRef50_B5W389 Diguanylate cyclase with PAS/PAC and Chase2 sensors n=4 Tax=Cyanobacteria RepID=B5W389_SPIMA Length = 729 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 65/174 (37%), Positives = 94/174 (54%), Gaps = 2/174 (1%) Query: 159 LVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKL 218 L EQL + NA L ++ D LTGLPNR+ E LT A + + F+DL+NFK Sbjct: 543 LAEQLEKYNAELQQRADHDPLTGLPNRQLFEERLTQALIWADTNQKFVGLFFLDLNNFKP 602 Query: 219 INDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQ 277 IND++GH+ GDL L V ERL + + + RLGGDEF ++ +AD + E+I Sbjct: 603 INDQYGHHVGDLVLKLVAERLRGCLRASDTVSRLGGDEFTIILPGIPSHADAVRVAEKIL 662 Query: 278 QQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKT 331 Q+ E L D + G S+GI ++ D ++ + AD AMY+ K Q + Sbjct: 663 DQVTQESEL-DSHVITIGLSIGISLYPLDSQDYETLVQKADAAMYRAKSRHQNS 715 >UniRef50_B6EN86 Putative uncharacterized protein n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EN86_ALISL Length = 332 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 73/253 (28%), Positives = 119/253 (47%), Gaps = 24/253 (9%) Query: 91 VPDR-----WGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQL 145 VPD W + A + + ++ P+ PDGS YGT+CA ++ + ++L Sbjct: 90 VPDALKNEYWINAPAVEDGPVRSYCGVPVFHPDGSIYGTICAIDTKHTNYKSALVKLLHH 149 Query: 146 FAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHK 205 + LI ++ EQ R+ + TDS+TGL NRR + ++ Sbjct: 150 LSKLITADLKMAEEAEQHRQ-------MALTDSMTGLLNRRGLDILGKQKLKDSKRYQDN 202 Query: 206 IMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVS-LNN 264 I I + D+DN K +ND GH GD + + L + + ++ R GGDEF+V++ LN Sbjct: 203 IGILYFDIDNLKQVNDNHGHEFGDQCIQLLANILKSTIRESDLTARTGGDEFIVLALLNK 262 Query: 265 ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADI----- 319 EN + +L + +QIR Y + ++ PG +L + + DS L D+ Sbjct: 263 ENDNELAL---LAEQIRQRYQ--EKTMHQPGLNLTNISIGRHLEPYDSVLSLKDMFINTD 317 Query: 320 -AMYQEKKHKQKT 331 AMY+EK K+ T Sbjct: 318 TAMYKEKDQKKAT 330 >UniRef50_C9YA12 Uncharacterized signaling protein PA1727 n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YA12_9BURK Length = 786 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 61/169 (36%), Positives = 87/169 (51%), Gaps = 7/169 (4%) Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 Y DSLT LPNRR + L T A H + F+DLD+FK +ND GH+ GD+ L Q Sbjct: 344 YFDSLTMLPNRRMLMGRLETAMHAALSTGHLGALLFVDLDDFKTLNDTLGHHQGDILLQQ 403 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVV--SLNNENADISSLRE----RIQQQIRGEYHLGD 288 V RL + + + + RLGGDEF+V+ L+ + A+ S+ E ++ Q + Y LG Sbjct: 404 VANRLQSCVREADTVARLGGDEFVVMLEGLSKDVAEASTQAEAVAGKVMQALNQPYDLGT 463 Query: 289 VDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHP 337 + S+GI + D L AD+AMYQ K + T + P Sbjct: 464 LT-RSSTPSVGITVFGKQQESLDEPLKRADLAMYQAKAAGRNTSRLFDP 511 >UniRef50_Q1QT31 Diguanylate cyclase/phosphodiesterase with GAF sensor n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QT31_CHRSD Length = 777 Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 76/252 (30%), Positives = 117/252 (46%), Gaps = 17/252 (6%) Query: 95 WGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYI 154 W + I A LG L P+++ GS G L S + ++ +L+ A +A + Sbjct: 261 WREQITAWGLGAEIAL--PLNVSVGS-SGVLAVYSQQSGDFASDERALLERLAENLAFGL 317 Query: 155 QKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLD 214 + L + N + +Y D +TG+ NRR++ L L A H I FIDLD Sbjct: 318 DRLRLQNVRKAQNQEIKRLAYEDPVTGMANRRSLLARLHELVGRANH-EQAAAILFIDLD 376 Query: 215 NFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRE 274 +FKL+ND GH GD L V R+N + G+++ R GGDEF+VV +++ S + Sbjct: 377 DFKLVNDALGHKVGDRVLQNVAWRINNTLREGDLVARQGGDEFIVVMMDDPRYSPSVAED 436 Query: 275 RIQQQIRGEYHLG---DVDLYYP----------GASLGIVEVDPETTDADSALHAADIAM 321 Q+ RG + L P GAS+G+ + D ++ + AD+AM Sbjct: 437 VRQRLARGAEEMARRISRTLRQPFEINGYAHRLGASIGVSLFPYLSDDPETVIDQADMAM 496 Query: 322 YQEKKHKQKTPF 333 Y K+ Q T F Sbjct: 497 YAAKRSGQHTVF 508 >UniRef50_Q0RQ82 Putative sensory box/GGDEF family protein n=1 Tax=Frankia alni ACN14a RepID=Q0RQ82_FRAAA Length = 814 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 57/154 (37%), Positives = 85/154 (55%), Gaps = 4/154 (2%) Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 Q+ D LTGLPNR + E +T L +A + ++ + FIDLD FK +ND GH++GD L Sbjct: 299 QARHDPLTGLPNRTVLAERVTEL--MAAEPDRRLGLCFIDLDGFKAVNDSLGHDAGDRLL 356 Query: 233 IQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDL 291 + V RL G+++ R+GGDEF+V+ + D+++ + + +GD L Sbjct: 357 VAVAGRLTAALPPGQLLVRMGGDEFVVLLADTAGIDDVTATARAVLAALAEPVRVGDQSL 416 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 GAS+G+VE D L AADI +YQ K Sbjct: 417 SI-GASMGLVERPAADGDLADLLRAADITLYQAK 449 >UniRef50_C1F5G2 GAF domain/GGDEF domain protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F5G2_ACIC5 Length = 369 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 80/283 (28%), Positives = 129/283 (45%), Gaps = 43/283 (15%) Query: 75 SLCKRAIDENCFFSDEVPDRWGDC------IAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 S C AI +N F VPD D + + I + PI P+G GT+C Sbjct: 74 SFCAHAIAQNELFV--VPDATKDARFSGSPLVLDDPNIRFYAGMPIVSPEGFHVGTMCVL 131 Query: 129 SSEKRQWSERAEQVLQLFAGLIAQYIQ-------------KEALVEQ--------LREAN 167 + R+ +E + L++ A +A Q K+A EQ L+EAN Sbjct: 132 DKKPRELTEEKQVALRVLARQVAAQFQMRRQLLELREARAKQAKTEQRLRESQTRLKEAN 191 Query: 168 AALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNS 227 A L TD+LTG+ NRRA E L + ++ + + +D+D+FK +ND GH + Sbjct: 192 ACLQEMVTTDALTGVKNRRAFDEGLQQAWKMSARTKSPLSLLMVDVDHFKRVNDTLGHEA 251 Query: 228 GDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLG 287 GD L V + L + ++ +++ R GG+EF+VV E + E+++ I Sbjct: 252 GDDVLRLVAQTLQFMTRSTDMVARYGGEEFVVVLPGTEAEPAVAFAEQLRLNI------- 304 Query: 288 DVDLYYPGASLGI-VEVDPET----TDADSALHAADIAMYQEK 325 +L + G L + + VD + T+ + H AD A+Y+ K Sbjct: 305 -ANLSWRGHPLTVSIGVDSGSGSGKTECELVAH-ADAALYRAK 345 >UniRef50_A3JB69 Sensory box/GGDEF/GAF/EAL domain protein n=1 Tax=Marinobacter sp. ELB17 RepID=A3JB69_9ALTE Length = 806 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/220 (31%), Positives = 109/220 (49%), Gaps = 6/220 (2%) Query: 106 ITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLRE 165 IT ++ PI D L ++ + ++ + L+ + Q I+++ + ++ +E Sbjct: 305 ITRYMGIPIFSGDNRV--GLVGLANRQEGYTNKLAIELKPLLQTVGQLIERKRMYQERQE 362 Query: 166 ANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGH 225 L + DSLTGLPNRR + E + A + I FIDLD FK IND +GH Sbjct: 363 HQKGLEQAANFDSLTGLPNRRRLTELFEQELTFADQRQSALSICFIDLDGFKGINDDYGH 422 Query: 226 NSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYH 285 + GD L V RL + + ++I RLGGDEF+ + + EN +++ ER+ + IR Sbjct: 423 SVGDAVLKTVAARLQHVLRECDIIARLGGDEFVAIIRDVEN---NAVYERMLEAIRRPIS 479 Query: 286 LGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 D+ L AS+G+ + + D L AD AMY K Sbjct: 480 HQDLTLDL-AASMGVTLYPRDPSAPDLLLRHADQAMYAAK 518 >UniRef50_C9PLR8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PLR8_VIBFU Length = 1097 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 7/158 (4%) Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 ++ D LT LPNRR + + LT + + + + F+DLDNFK +ND GHN GDL L Sbjct: 672 AFYDPLTLLPNRRLLLDRLTEAINHSVRTRNFSALFFLDLDNFKNLNDSAGHNKGDLLLG 731 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVS--LNNENADISSLRERIQQQIRG----EYHLG 287 QV ERL + G+ + RLGGDEF++++ L++E ++ ER+ Q+I EY+L Sbjct: 732 QVAERLVNSVRQGDTVARLGGDEFVIIASDLSHEPTLAANQAERLAQKIVSNLTREYNL- 790 Query: 288 DVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 D Y AS+G+ + E + L AD+AMY+ K Sbjct: 791 DGLTYNSSASIGVTLFNSENLPKEDLLKQADMAMYKAK 828 >UniRef50_C1DPF7 Intracellular signalling protein with diguanylate cyclase and phosphodiesterase activities n=1 Tax=Azotobacter vinelandii DJ RepID=C1DPF7_AZOVD Length = 586 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 55/152 (36%), Positives = 82/152 (53%), Gaps = 1/152 (0%) Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 ++ D LT LPNR + + AR + + F DLD FKLIND GH +GDL L Sbjct: 158 AFYDPLTDLPNRGLLLIQADQAIARARRERTALNVLFFDLDRFKLINDTLGHPAGDLMLR 217 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYY 293 + +RL + + +++GRL GDEF+VV + + + RIQ+Q+ + L Sbjct: 218 TIAQRLRSELRTTDIVGRLAGDEFVVVLADCDLRQTTETIRRIQKQLSASCQIAGATL-A 276 Query: 294 PGASLGIVEVDPETTDADSALHAADIAMYQEK 325 P AS+GI + D ++ L+ AD+AMYQ K Sbjct: 277 PSASIGISRFPDDGEDMETLLYYADLAMYQAK 308 >UniRef50_Q47ZI3 Sensory box/GGDEF/EAL/CBS domain protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47ZI3_COLP3 Length = 858 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 92/169 (54%), Gaps = 2/169 (1%) Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 ++ D LT LPNRR F+ + ++A N+K+ + FIDLD FK +ND +GH GDL L Sbjct: 421 AFYDELTQLPNRRLFFDRVDMALAIAHRKNNKMALFFIDLDYFKEVNDNYGHRIGDLLLR 480 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLY 292 +RL + G+ + R+GGDEF ++ + D I RI +++R YH+ L Sbjct: 481 SFAKRLTESSKEGDTVARIGGDEFTLLLTDMREVDHICKACNRIVEKLRQPYHIEGHALN 540 Query: 293 YPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 S+GI + T+ + + ADIAMY+ K + + + PA+++ Sbjct: 541 IT-TSIGIAVYPEDGTNEEELMKNADIAMYRAKDIGRNSFQLFTPAMNA 588 >UniRef50_B8E1P2 Diguanylate cyclase n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E1P2_DICTD Length = 450 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/164 (37%), Positives = 88/164 (53%), Gaps = 5/164 (3%) Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 S TD LTGL NRR +L + LN K +I FIDLD K IND GHN GD LI Sbjct: 285 SITDPLTGLYNRRGFITLADHTLNLVKRLNKKAIILFIDLDYMKWINDNLGHNVGDQALI 344 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYY 293 V L + + ++I R+GGDEF+V+ + E + ER+ ++++ E++ + Y Sbjct: 345 DVANILTSTFRQNDLIARIGGDEFVVLGIIGEENHKEKIIERLTEKVK-EFNTKEKRPYK 403 Query: 294 PGASLGIVEVDPETTDA-DSALHAADIAMYQEKKHKQKT---PF 333 S+G V DPE + L AD MY+EK+ K++ PF Sbjct: 404 LSLSVGYVVYDPENPKTLEELLQLADQLMYEEKRLKKQNSQYPF 447 >UniRef50_Q0BZG3 Putative diguanylate cyclase n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0BZG3_HYPNA Length = 597 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 99/193 (51%), Gaps = 8/193 (4%) Query: 149 LIAQYIQK------EALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHL 202 L+A +++K + LV +L+E +A A ++ D LT + NRR F L S+AR Sbjct: 128 LVAAHLRKGLLQDAKTLVMELQEKSAEADALAHMDPLTAVTNRRGFFRKLEERLSIARAH 187 Query: 203 NHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEF-LVVS 261 N + + IDLD FK +ND FGH +GD L Q G R+ + ++GRLGGDEF +++ Sbjct: 188 NTPLTVGVIDLDGFKPVNDIFGHAAGDQLLFQSGARVREIAGPNGIVGRLGGDEFGIILP 247 Query: 262 LNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAM 321 + A+I + +RI + + + + + GAS G ++ AD A+ Sbjct: 248 ELGDEAEILEIGQRICDALAEPFKVKE-GIARIGASAGFAAFPHAGDTTETLFERADYAL 306 Query: 322 YQEKKHKQKTPFV 334 Y K+ ++ P V Sbjct: 307 YHSKQQERGRPMV 319 >UniRef50_A8L1R7 Diguanylate cyclase/phosphodiesterase n=2 Tax=Frankia sp. EAN1pec RepID=A8L1R7_FRASN Length = 832 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/186 (34%), Positives = 90/186 (48%), Gaps = 9/186 (4%) Query: 159 LVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKL 218 L+ Q+ E L Q++ D LTGL NR E L + ++ + F DLD FK Sbjct: 377 LLGQVEEKQHQLRYQAFHDPLTGLGNRALFTERLDSALRRRGPGTGRLAVLFCDLDGFKR 436 Query: 219 INDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQ 278 +ND FGH +GD L RL + + + RLGGDEF ++ L+ + D S+ R+ Sbjct: 437 VNDEFGHAAGDDLLRVTARRLAGCVRPADTVARLGGDEFAIL-LDADAEDPGSVGRRLAA 495 Query: 279 QIRGEYHLGDVDLYYPGASLGIVEVDPET--TDADSALHAADIAMYQEK-----KHKQKT 331 +R L D AS G+V VDP AD+ LH AD+AMY K + T Sbjct: 496 AVRAPVRLADTTFTV-AASTGLVVVDPAAGPVTADALLHRADLAMYAAKAQGDGRQTVYT 554 Query: 332 PFVAHP 337 P +A P Sbjct: 555 PDLAVP 560 >UniRef50_C0N9H7 GGDEF domain protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N9H7_9GAMM Length = 336 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 123/253 (48%), Gaps = 5/253 (1%) Query: 77 CKRAIDEN--CFFSDEV-PDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKR 133 C+R I+ N F ++ + D W + + +L P+H P+G +GTLC ++ Sbjct: 74 CERVINTNQRLFVNNALESDEWCNNPDIE-FNLVNYLGFPLHWPNGDIFGTLCVLDTKAH 132 Query: 134 QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLT 193 Q++++ E+++ F +I ++ +L + L + TD LT + NRRA Sbjct: 133 QYTDKQERLMVQFRNMIEVNLELLEKNLKLENLSKNLEYLANTDELTDIWNRRAFIAESE 192 Query: 194 TLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLG 253 A H + + +D+D+FK IND+FGH GD L + ++++ ++ GR+G Sbjct: 193 KELQRAVRNEHPVCLLMLDIDDFKQINDQFGHEVGDEVLKLFCHGIMAIKRSYDIFGRIG 252 Query: 254 GDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSA 313 G+EF ++ + + L ERI++++ + S+G+ ++ P T S Sbjct: 253 GEEFAILLPETKQTEAVELAERIREKVANIFFHTQQQKVGITVSIGVCQLTPLDT-VLSG 311 Query: 314 LHAADIAMYQEKK 326 L+ AD +Y K+ Sbjct: 312 LNKADKILYTAKR 324 >UniRef50_D1B2D0 Diguanylate cyclase n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B2D0_SULD5 Length = 755 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 66/176 (37%), Positives = 94/176 (53%), Gaps = 20/176 (11%) Query: 168 AALIAQSYTDSLTGLPNRRA--------IFENLTTLFSLARHLNHKIMIAFIDLDNFKLI 219 A LI Q+ DSLT LPNR I+EN FSL +IDLD+FK + Sbjct: 325 ADLIFQATHDSLTKLPNRAYFQQCMNDWIYENAPP-FSLL----------YIDLDHFKNV 373 Query: 220 NDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQ 279 ND FGH+ GDL LI+ +RL ++ + R GGDEF+++S + ++ + E+I Q+ Sbjct: 374 NDSFGHHFGDLILIEFSKRLLHVKATQSIAIRQGGDEFILLSYLVDEQELLAQAEKIMQE 433 Query: 280 IRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVA 335 + Y +G + + GAS+GI + D L A+DIAMY+ KKHK A Sbjct: 434 VSKPYVIGQFN-FAIGASIGIAKYPEHGHTLDMLLRASDIAMYEAKKHKNSVRLFA 488 >UniRef50_B9LZ98 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Geobacter sp. FRC-32 RepID=B9LZ98_GEOSF Length = 912 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 59/153 (38%), Positives = 85/153 (55%), Gaps = 2/153 (1%) Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 +Y D+LTGLPNR + + L A N K+ I F+DLD FK IND GH +GD L Sbjct: 482 AYYDTLTGLPNRSLLQDRLGQGIVQAVRDNRKVAIMFLDLDRFKSINDTLGHVAGDSLLA 541 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLY 292 V ERL + + + R+GGDEF+++ E+A D++ + E+I I L D +++ Sbjct: 542 TVAERLTECVRETDTVARIGGDEFVIIISAIEHAEDLNKIAEKILAAISKPLVLNDQEIF 601 Query: 293 YPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 AS+GI + TD L AD+AMY+ K Sbjct: 602 IT-ASIGIAIYPEDGTDVQGLLKNADLAMYKAK 633 >UniRef50_P72843 Regulatory components of sensory transduction system n=1 Tax=Synechocystis sp. PCC 6803 RepID=P72843_SYNY3 Length = 840 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 96/179 (53%), Gaps = 2/179 (1%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 G++ Y+ + + + ++ AL Q++ D LTGLPNR + L A H Sbjct: 384 GIVTHYVAVKEDITKEKQQAEALFHQAHYDHLTGLPNRILAKDRLQQAIESALRQKHIFG 443 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVV-SLNNEN 266 + F+DLDNFK +ND GH++GD L++V ERL + + + RLGGDEFL++ + + Sbjct: 444 LMFLDLDNFKKVNDTLGHDAGDQLLVEVSERLQRALRQTDTVARLGGDEFLIILDQVSHS 503 Query: 267 ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 + ++ +R+ + +R +L ++ + G S+GI + AD L AD AMY K Sbjct: 504 RKLMAIAQRLLRVMRQPVNLQGLEFFVHG-SIGITVFPDDGFHADVLLRNADTAMYAAK 561 >UniRef50_C6CSH3 Diguanylate cyclase/phosphodiesterase with MHYT sensor n=2 Tax=Bacillales RepID=C6CSH3_PAESJ Length = 683 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 62/156 (39%), Positives = 83/156 (53%), Gaps = 5/156 (3%) Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 +Y+D LTGL NR A+ AR + F+DLD FK+IND GH+ GDL + Sbjct: 250 AYSDPLTGLANRHAMNRYFDQKLDKARSYG----LLFLDLDQFKIINDTLGHDIGDLLVQ 305 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYY 293 V +RL + G RLGGDEFL+V+ E +++ L RI + IR Y L +LY Sbjct: 306 AVAKRLRSHVSEGAQTFRLGGDEFLLVTRGMEPSEVEKLANRILEDIRKPYLLEGNELYI 365 Query: 294 PGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQ 329 G S+GI + S L AAD AMYQ K+ + Sbjct: 366 TG-SIGISLSPQHGIERSSLLIAADTAMYQAKRRGK 400 >UniRef50_C5V4D8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V4D8_9PROT Length = 1138 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 95/179 (53%), Gaps = 9/179 (5%) Query: 160 VEQLREANAALIAQSYTDSLTGLPNRRAIFENLT-TLFSLARHLNHKIMIAFIDLDNFKL 218 + + +++ + ++ ++ D LTGLPNRR + + L L S R+ H I FIDLDNFK Sbjct: 687 ITERKKSESEIVRLAFYDPLTGLPNRRLLMDRLQHALTSNLRNDKHG-AILFIDLDNFKS 745 Query: 219 INDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN------NENADISSL 272 +ND GH GDL L++V +RL + + + RLGGDEF+V+ N N A + Sbjct: 746 LNDTKGHAVGDLLLVEVAQRLKGCVREEDTVARLGGDEFVVLLDNLSHGHDNAGAHTKRV 805 Query: 273 RERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKT 331 E+I Q + Y L + Y+ S+G+ + + D L AD AMYQ K + T Sbjct: 806 AEKILQALNLSYMLQGYE-YHSSPSIGVALFCADASSPDELLKRADSAMYQSKAAGRNT 863 >UniRef50_C7LTY3 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LTY3_DESBD Length = 1075 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 66/181 (36%), Positives = 101/181 (55%), Gaps = 4/181 (2%) Query: 147 AGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENL-TTLFSLARHLNHK 205 AG Y+ + +L+ AL Q+ D+LTG+PNR + + L L LAR K Sbjct: 617 AGQTTNYVSIFHDITELKRQQDALEYQAQHDALTGMPNRILLGDRLRMALAQLARS-GGK 675 Query: 206 IMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNE 265 + + F DLDNFK IND GH GD L+ + RL L ++G+ + RLGGDEFL++ E Sbjct: 676 LALLFFDLDNFKTINDGLGHGVGDELLVDLSRRLERLLRSGDTLARLGGDEFLILLPEIE 735 Query: 266 NADISS-LRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQE 324 + D +S + R+ ++ +H GDV+ Y+ AS+G+ + +A + AD+AMY+ Sbjct: 736 SVDAASHIATRMLDALKAPFHHGDVE-YFVTASIGLTIAPDDGNEAPKLIKNADMAMYRA 794 Query: 325 K 325 K Sbjct: 795 K 795 >UniRef50_C8SP12 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SP12_9RHIZ Length = 894 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 110/227 (48%), Gaps = 10/227 (4%) Query: 101 ARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALV 160 A G + STPI G+ G S R+ +E +++ + I+++ Sbjct: 400 AERYGYRSCWSTPIVSHQGAVLGVFAMYSMTVREPAEAETRLINFTTRIAGIAIERKKAE 459 Query: 161 EQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLIN 220 +Q+ + D LTGLPNR + + L+ A+ + + + FIDLDNFKLIN Sbjct: 460 DQIH-------FMANHDVLTGLPNRALLQDRLSQAILHAQRYDRWVSVVFIDLDNFKLIN 512 Query: 221 DRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEF-LVVSLNNENAD-ISSLRERIQQ 278 D GHN+GD L V ER+ + + I RLGGDEF LV+S +N D I+ ++++ Sbjct: 513 DTLGHNAGDRLLKTVAERMVGCISSTDTIVRLGGDEFVLVLSDQPKNVDLIAETLQKLRT 572 Query: 279 QIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 I LGD AS+GI + +S + AD AMY+ K Sbjct: 573 AIAEPLQLGD-HCVRATASIGIATYPKDGKAPESLVANADAAMYRAK 618 >UniRef50_A6LXC6 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=2 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LXC6_CLOB8 Length = 792 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/178 (35%), Positives = 100/178 (56%), Gaps = 10/178 (5%) Query: 155 QKEALVEQLRE---ANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFI 211 + LV+Q+++ A + Y D+LT +PNR+ + EN+ L ++ + K I FI Sbjct: 350 KNSKLVDQIKDKILAEEKIRHYVYYDALTEIPNRKMMLENINELL---KNKDKKFAILFI 406 Query: 212 DLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD--I 269 DLD+FK IND FGH GD L +V L ++I R+GGDEF+++ L N +D I Sbjct: 407 DLDDFKNINDNFGHQVGDKVLKKVASTLKDSIGPQDIISRIGGDEFIII-LKNVESDIYI 465 Query: 270 SSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKH 327 + RIQ++++ + L GAS+GI D+D+ ++ AD+AMY+ KK+ Sbjct: 466 KEIALRIQKELKKPITYNEESLIL-GASIGISIFQEHGEDSDTLINNADLAMYEVKKN 522 >UniRef50_Q1N196 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1N196_9GAMM Length = 913 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/151 (39%), Positives = 84/151 (55%), Gaps = 3/151 (1%) Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 D LTGLPNR A+ E L LA+ K+ + F DLD FK +ND GHN GD+ L ++ Sbjct: 493 DDLTGLPNRNALSELLDEKIELAKQFGLKVGLLFFDLDRFKEVNDALGHNYGDVLLKKIP 552 Query: 237 ERLNT-LQQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYP 294 +R+N LQ + RLGGDEF +V EN A + L + IQ +R + LG + + Sbjct: 553 QRINNYLQPINAKLCRLGGDEFAIVIPTIENTAQVLELAKDIQTALRQAFDLGQLHVEV- 611 Query: 295 GASLGIVEVDPETTDADSALHAADIAMYQEK 325 ASLG+ +D + + AD+AMY+ K Sbjct: 612 SASLGVSCYPENGSDVGTLMRCADVAMYKAK 642 >UniRef50_C3MGT7 Putative diguanylate cyclase (GGDEF)/phosphodiesterase (EAL) with PAS domain n=1 Tax=Rhizobium sp. NGR234 RepID=C3MGT7_RHISN Length = 928 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 82/155 (52%), Gaps = 1/155 (0%) Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 DSLTGLPNR +L A + K+ + IDLD FK +ND GH +GD L+ + Sbjct: 510 DSLTGLPNRLQFNSHLDEELDAAVWFSRKVAVIGIDLDKFKEVNDLHGHAAGDFVLVTIA 569 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGA 296 +R+ Q GE + R GGDEF V + +++ RI+ ++ E GD +L G Sbjct: 570 QRMKEHLQEGEFVARFGGDEFAAVKRFEDLSEVHDFLRRIETCLQEEMRFGDFEL-KSGG 628 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKT 331 S+G+ + AD+ ++ AD+AMY+ K +T Sbjct: 629 SMGVAIYPQDAETADTLINNADLAMYRAKAALNQT 663 >UniRef50_C5SQK5 Diguanylate cyclase/phosphodiesterase n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SQK5_9CAUL Length = 654 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 95/183 (51%), Gaps = 12/183 (6%) Query: 163 LREANAALIAQ---------SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDL 213 R +A L+A+ ++ D+LTGLPNRR+ F L A++ + +A IDL Sbjct: 202 FRAVHARLVAEKHRHEAQILAHYDALTGLPNRRSFFTELDVALVGAKN-GYAFDLALIDL 260 Query: 214 DNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEF-LVVSLNNENADISSL 272 D FK +ND +GH+ GD LI+VG+RL + + V+ RLGGDEF L+++ + D+ Sbjct: 261 DGFKPVNDLYGHSIGDALLIEVGKRLRAVVGSRGVVARLGGDEFALILNGQMPDDDLRRF 320 Query: 273 RERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETT-DADSALHAADIAMYQEKKHKQKT 331 E + +R Y LG S+G V DP A L AD A+Y K++ + Sbjct: 321 GEDLCDTLRQTYVLGGGVCANISGSVGFVHSDPGAQWSASQMLERADYALYYAKQNLRGA 380 Query: 332 PFV 334 P + Sbjct: 381 PII 383 >UniRef50_Q3JAR2 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=2 Tax=Nitrosococcus oceani RepID=Q3JAR2_NITOC Length = 944 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/154 (37%), Positives = 85/154 (55%), Gaps = 2/154 (1%) Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 ++ D+LTGLPNR + L A+ +H+I + FIDLD FK IND GH GD+ L Sbjct: 514 AHHDALTGLPNRSLFLDRLEHAIHHAQRHHHRIAVLFIDLDRFKFINDTLGHPIGDILLK 573 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLY 292 QV ER+ + + I RLGGDEF V+ N + + IS + ++I +++ +L+ Sbjct: 574 QVAERMRLNIRAEDTIARLGGDEFTVIIENFTDTSAISLITQKIISACEKPFNIKGNELF 633 Query: 293 YPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 AS+G+ + +A L AD AMYQ KK Sbjct: 634 V-SASIGVSLYPEDGHEASMLLQRADAAMYQAKK 666 >UniRef50_B9Z7T9 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z7T9_9NEIS Length = 770 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/180 (35%), Positives = 98/180 (54%), Gaps = 4/180 (2%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 G + Y+ V + R+A + ++ D LTGLPNR + E + +LAR ++ Sbjct: 574 GRVVNYVGMFQDVTERRQAEERIRHLAHHDYLTGLPNRAHLLERASQALALARRYQRRLA 633 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLV-VSLNNEN 266 I F+DLD FK INDR+GH+ GD+ L V +RL L + + + RLGGDEF++ ++ ++ Sbjct: 634 ILFLDLDRFKPINDRYGHDVGDVVLRTVADRLLALVRESDTVCRLGGDEFVILLAEYHDF 693 Query: 267 ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSAL-HAADIAMYQEK 325 A + L ++ I +G + L AS+GI PE D+ AL AD AMY+ K Sbjct: 694 ASVEQLAHTLRTAIEQPCEVGALRLAV-SASIGIATY-PEHGDSVGALIQRADAAMYRAK 751 >UniRef50_A1WXR7 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Halorhodospira halophila SL1 RepID=A1WXR7_HALHL Length = 749 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 98/182 (53%), Gaps = 3/182 (1%) Query: 160 VEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLI 219 + QL++A++ + D LTGLPNR + L + + ++ + F+DLD+FK I Sbjct: 303 ITQLKDAHSRSEYLANHDPLTGLPNRSLFQDRLQQAIAQTQRHEGQVGLMFLDLDHFKTI 362 Query: 220 NDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQ 279 ND GH GD L+QV ERL L ++ + + R+GGDEF VV + + ++ S+ +R+ + Sbjct: 363 NDTLGHEVGDELLVQVAERLGELVRDVDTVARIGGDEFTVVLTDCDPEEVGSIAQRLVEG 422 Query: 280 IRGEYHLGDVDLY-YPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPA 338 + G + + +L P A L + D E D + AAD+AMY+ K+ + + Sbjct: 423 LGGTFVVDGRELQATPSAGLALYPRDGE--DVHTLCKAADMAMYRAKEDGRNRLRLCESG 480 Query: 339 LH 340 LH Sbjct: 481 LH 482 >UniRef50_B4T6U5 Cyclic diguanylate phosphodiesterase (EAL) domain protein n=44 Tax=Salmonella enterica RepID=B4T6U5_SALNS Length = 663 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/165 (33%), Positives = 94/165 (56%), Gaps = 3/165 (1%) Query: 176 TDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQV 235 TD++TGLPNR AI E + ++A ++ I ++DLDNFK IND +GH GD L V Sbjct: 239 TDTVTGLPNRNAIHEFIN--HAIASAGESQVGIVYLDLDNFKKINDAYGHMFGDQLLQAV 296 Query: 236 GERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPG 295 L + + +++ RLGGDEF+V++ + A + ++ RI ++R + +G +++ Y G Sbjct: 297 SLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRILTRLRQPFRIGLIEV-YTG 355 Query: 296 ASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 ++GI D++S + AD AMY K+ + V P ++ Sbjct: 356 CAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQFCVFSPEMN 400 >UniRef50_Q47BF2 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Dechloromonas aromatica RCB RepID=Q47BF2_DECAR Length = 1038 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 64/201 (31%), Positives = 105/201 (52%), Gaps = 9/201 (4%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLT-TLFSLARHLNHKI 206 G I ++ + + +EA + + D LT LPNRR + E L+ L S R H Sbjct: 577 GEITHFVSSFLDITKRKEAEEQIQFLALYDPLTHLPNRRLLNERLSKALTSSGRQRRHAA 636 Query: 207 MIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVV------ 260 ++ FIDLDNFK+IND GH+ GDL L QV RL ++ + + RLGGDEF+++ Sbjct: 637 LL-FIDLDNFKMINDSMGHDIGDLLLRQVALRLRESVRSNDTVSRLGGDEFVILLEELSP 695 Query: 261 SLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIA 320 ++++ I + +++ + Y G+ ++ AS+G + T +S L +AD+A Sbjct: 696 NIHDATTQIEHIAQKMLDSLVQPYKFGEFS-HHCTASIGAIPFMDATETIESLLKSADMA 754 Query: 321 MYQEKKHKQKTPFVAHPALHS 341 MY+ K + F PA+ + Sbjct: 755 MYKAKAAGKNRLFFFDPAMQT 775 >UniRef50_Q0C4X2 Bacterial signalling protein N terminal repeat/GGDEF/EAL domain protein n=9 Tax=Proteobacteria RepID=Q0C4X2_HYPNA Length = 725 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/165 (38%), Positives = 85/165 (51%), Gaps = 8/165 (4%) Query: 161 EQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLIN 220 EQLR + TDSLTGLPNR + L A+ K+ + IDLD FK IN Sbjct: 267 EQLRH-------MAVTDSLTGLPNRVSFTGRLDHEIDTAKARGLKVALIGIDLDRFKEIN 319 Query: 221 DRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQI 280 D GH +GD L + R+ L + GE + RLGGDEF V AD+S R++ + Sbjct: 320 DLRGHGAGDDVLRTLAARMRALLREGEFVARLGGDEFAAVKRMQNGADVSDFLVRLEAAL 379 Query: 281 RGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 L + + PGASLG+ + TD ++ L AD+AMY+ K Sbjct: 380 YEPIALDEFHV-TPGASLGVSIYPDDATDKNALLGNADLAMYRAK 423 >UniRef50_A6QAR7 Signal transduction protein n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QAR7_SULNB Length = 958 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 106/239 (44%), Gaps = 35/239 (14%) Query: 118 DGSFYGTLCAASSEKRQWSERAEQVL-------------------QLFAGLIAQYIQKEA 158 D FYG + +WS R E V Q IA Y E Sbjct: 455 DKVFYGNMWHQLLTAGRWSGRVENVTKDGKVLPVWLTIAVVRNEKQDIQNYIAIYTNLEE 514 Query: 159 LVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKL 218 +++ +AN +Y DSLTGLPNR + + + S+A KI + FIDLD FK+ Sbjct: 515 IIKMETKANYL----AYHDSLTGLPNRSSFEMRINEILSVADIEKDKIAVLFIDLDRFKV 570 Query: 219 INDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVV-SLNNENADISSLRERIQ 277 IND GH+ GD LI++ R+ T N ++ R+GGDEF+V+ L + E++ Sbjct: 571 INDTLGHHIGDEMLIELAHRIQTQLDNDTLLARIGGDEFVVIMKLKMHKKEAGEQAEKLL 630 Query: 278 QQIR-----GEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKT 331 IR YHL AS+GI + D + + AD AMY K+ + T Sbjct: 631 DVIREPIDIQNYHLN------TTASIGIAIYPDDGKDKNEIVKHADSAMYHAKEKGKDT 683 >UniRef50_A8F4A7 Diguanylate cyclase n=1 Tax=Thermotoga lettingae TMO RepID=A8F4A7_THELT Length = 561 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 68/228 (29%), Positives = 111/228 (48%), Gaps = 3/228 (1%) Query: 106 ITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLRE 165 I + LS PI D + ++E A + +LFAG + ++ L E+L+ Sbjct: 328 IKSLLSIPIIAKDEVVAFLNLDNFENENAFNEEAVNIAELFAGHVGVLFERMRLEEELKI 387 Query: 166 ANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGH 225 + SY D LT LPNRR + E + F++A N + + ++DL FK +ND FGH Sbjct: 388 QKQLMEYLSYHDPLTDLPNRRMLEEYVEKTFAIASRENKPVCVIYMDLYKFKDVNDTFGH 447 Query: 226 NSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYH 285 GD L +G RL + G+++ R GGDEF+ V + R+ + I+ Sbjct: 448 PVGDDLLKILGNRLKKEIRRGDMVARFGGDEFVFVLYDVSVEGAIEFSRRLLEFIQKPIV 507 Query: 286 LGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPF 333 L + ++ A+LGI + + ++ L AD+A+Y K+ +Q PF Sbjct: 508 LQN-KIFTISANLGIAVYPADGDNFETVLRNADMALYTAKRKEQ--PF 552 >UniRef50_UPI0001C3146D diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3146D Length = 740 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/205 (31%), Positives = 106/205 (51%), Gaps = 5/205 (2%) Query: 125 LCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 L + E+R+ + R V++ G +A + V + R A A L ++ D LTGLPN Sbjct: 264 LLTKAGEERKIAWR-NAVVRDATGTVASVLCSGEDVTERRRAEAQLAYLAHHDRLTGLPN 322 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R + E L + AR + + + LDNFKL+ND GH +GD L + +R+ L + Sbjct: 323 RAPLEEQLQRDLARARRTGGSVALVQVGLDNFKLVNDSLGHAAGDAVLSETAQRVAQLTR 382 Query: 245 NGEVIGRLGGDEF-LVVSLNNENADISS--LRERIQQQIRGEYHLGDVDLYYPGASLGIV 301 G+VI R GGDEF L++ E A + + +R+ + + + + ++ GAS+GI Sbjct: 383 AGDVIARQGGDEFMLLLDCGAEEAQVVAQLAGDRVMAALEQPFAVAGAE-FHIGASIGIA 441 Query: 302 EVDPETTDADSALHAADIAMYQEKK 326 +A+S AD+AM+Q K+ Sbjct: 442 LFPGNANNAESLFKHADMAMHQAKR 466 >UniRef50_Q2W1Z2 Hypothetical 1041 kDa protein in hypE 3'region n=2 Tax=Proteobacteria RepID=Q2W1Z2_MAGSA Length = 1510 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 83/151 (54%), Gaps = 1/151 (0%) Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 D LTG+PNR + + L + A+ K+ + FIDLDNFK+IND GH+ GD L Q Sbjct: 1079 DELTGIPNRSLLMDRLKHAVAQAKRQKTKLAVLFIDLDNFKVINDSLGHDVGDQLLKQAT 1138 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGA 296 ERL ++ + + RLGGDEF+ V + ++S+ RI + + + D L+ A Sbjct: 1139 ERLKHCVRDSDTLARLGGDEFVAVLTDVSLEKVNSVAARIVDFLGASFSINDKSLFV-SA 1197 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKH 327 S+GI + D+ + L AD AMY+ K+ Sbjct: 1198 SIGISVFPDDGQDSLTLLKHADTAMYRAKER 1228 >UniRef50_A4C4P9 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C4P9_9GAMM Length = 908 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/164 (35%), Positives = 100/164 (60%), Gaps = 5/164 (3%) Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 Q+ D LTGLPNR +FE LT LA+ N ++ + +IDLD FKLIND GH GD + Sbjct: 480 QANFDHLTGLPNRTLVFERLTNSVKLAKRANQEMAVLYIDLDMFKLINDSKGHLVGDELI 539 Query: 233 IQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISS--LRERIQQQIRGEYHLGDVD 290 QV +R ++ ++ +++ R+GGDEF++++ N + S+ + +++Q ++ + +G+ Sbjct: 540 KQVADRFKSVIRSSDILARVGGDEFVIIA-NAITPEYSAELVADKLQAVLKVPFMIGNER 598 Query: 291 LYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK-HKQKTPF 333 L + +SLGI + +A + L ++ AMYQ K+ +QK+ F Sbjct: 599 L-HTSSSLGIALYPFDGIEAGTLLLKSEQAMYQAKELGRQKSHF 641 >UniRef50_Q2BR68 Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) withPAS/PAC sensor n=1 Tax=Neptuniibacter caesariensis RepID=Q2BR68_9GAMM Length = 1250 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/164 (38%), Positives = 87/164 (53%), Gaps = 3/164 (1%) Query: 164 REANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRF 223 +E L +Y D LT LPNR + + L+ + + + +IDLD FK IND++ Sbjct: 682 KEQQLLLEFNAYHDKLTNLPNRVLLADRLSQAMHQQKRRGQTLAVVYIDLDGFKQINDQY 741 Query: 224 GHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRG 282 GH+ GD+ L+++G+R TL + G+ I RLGGDEF+ V L+ N + D L RI I Sbjct: 742 GHDVGDVLLVEIGQRFQTLLREGDTIARLGGDEFVAVMLDINSSMDSIPLLRRILHAI-S 800 Query: 283 EYHLGDVDLYYPGASLGIV-EVDPETTDADSALHAADIAMYQEK 325 L D + ASLG+ E D D L AD AMYQ K Sbjct: 801 VPVLVDDVVLQVSASLGVTFYPQAEDVDGDQLLRQADQAMYQAK 844 >UniRef50_C4L7I1 Diguanylate cyclase with PAS/PAC sensor and hemerythrin-like metal-binding domain n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L7I1_TOLAT Length = 762 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/171 (35%), Positives = 92/171 (53%), Gaps = 1/171 (0%) Query: 160 VEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLI 219 V + +E L +Y D LTGLPNR+ F+ L S A+ + + FIDLD FK + Sbjct: 442 VGERKETELKLRFMAYHDGLTGLPNRQLFFDRLARSISNAKRNKKQFGLLFIDLDGFKQV 501 Query: 220 NDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQ 278 NDR+GH +GD+ L V +R + + + + R+ GDEF+V+ + NA + + ++ Sbjct: 502 NDRYGHEAGDITLQTVADRFVSSLRENDTVARMAGDEFVVILNDLGNAHEAGYVARKLLD 561 Query: 279 QIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQ 329 I + D + GAS+GI T+ D+ L AAD AMYQ KK+ + Sbjct: 562 AIAPAIVIADGMECHVGASIGIAIFPDNGTEMDTLLVAADAAMYQCKKNGK 612 >UniRef50_B0CE49 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor, putative n=2 Tax=Acaryochloris marina MBIC11017 RepID=B0CE49_ACAM1 Length = 880 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/152 (37%), Positives = 86/152 (56%), Gaps = 3/152 (1%) Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIM-IAFIDLDNFKLINDRFGHNSGDLFLIQV 235 D +T LPNR E LT F +A+H ++ + F+DLD FK+IND GH GD LI+V Sbjct: 443 DEMTQLPNRVLFMERLTHAFRMAKHQQSRLFAVLFLDLDRFKIINDSLGHRVGDQLLIEV 502 Query: 236 GERLNTLQQNGEVIGRLGGDEFLVVSLNNENADIS-SLRERIQQQIRGEYHLGDVDLYYP 294 +RL + + I R GGDEF ++ E+AD + + +RI Q ++ + L + ++ Y Sbjct: 503 SKRLQQCLRKQDTIARFGGDEFAILLDTVEDADEAIHVAQRILQALKAKISLEEHEV-YT 561 Query: 295 GASLGIVEVDPETTDADSALHAADIAMYQEKK 326 AS+GI P+ + L +D AMY+ KK Sbjct: 562 SASIGITVSSPDYQAPEELLQDSDTAMYRAKK 593 >UniRef50_Q5P4K8 Putative sensory box/GGDEF family protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P4K8_AZOSE Length = 698 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 108/203 (53%), Gaps = 19/203 (9%) Query: 139 AEQVLQLF-------AGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFEN 191 A+Q ++LF +G + +I V A LI Q+ D+LTGLPNR + + Sbjct: 229 AQQSVELFLAPVENESGDVTHFIGVLNDVTARTHAEKRLIHQASHDALTGLPNRNLLNDR 288 Query: 192 LTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGR 251 +T ++AR + F+DLD FKL+ND +GH GD + +V R++ + G+ + R Sbjct: 289 IT--HAIARSRGRLTAVMFLDLDRFKLVNDSYGHAVGDALIREVANRVSACLRAGDTVAR 346 Query: 252 LGGDEFLVV-----SLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 LGGDEF+V+ S+ + + LR+R+ + +R +G ++L AS+G+ + Sbjct: 347 LGGDEFVVLLEDLASIEDAARLAAKLRDRLSESVR----IGSLELPLS-ASIGVALAPRD 401 Query: 307 TTDADSALHAADIAMYQEKKHKQ 329 D + L ADIAMY+ K+ + Sbjct: 402 GRDPEMLLKNADIAMYRAKERGR 424 >UniRef50_C8Q608 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Pantoea sp. At-9b RepID=C8Q608_9ENTR Length = 317 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/161 (37%), Positives = 81/161 (50%), Gaps = 1/161 (0%) Query: 165 EANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFG 224 +A L A S TD LTGLPNRR + ++L S AR K+ + FIDLDNFK IND G Sbjct: 137 QAEEKLKAISETDPLTGLPNRRMLRKHLRMALSGARRRAGKVGVLFIDLDNFKNINDTLG 196 Query: 225 HNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEY 284 H +GD L+Q L L I RLGGDEF VV + + ++S + + R Sbjct: 197 HAAGDRALMQFTADLKKLSPPRAFISRLGGDEFAVVMVGTDADNLSDWANHVLNRARKTV 256 Query: 285 HLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 + + G ++G D + AD+AMYQ+K Sbjct: 257 RFSNAQADF-GLTIGAAVYPVHGATPDELMKCADMAMYQQK 296 >UniRef50_Q2SFI2 FOG: EAL domain n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SFI2_HAHCH Length = 913 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 111/231 (48%), Gaps = 19/231 (8%) Query: 118 DGSFYGTLCAASSEKRQWSERAEQ---------------VLQLFAGLIAQYIQKEALVEQ 162 D +FY +L + +E W E V+ G +A Y+ + + Sbjct: 396 DKTFYRSLWRSITEHGHWQGEIENKRRNGEIYPAWQNINVVYDKNGNVANYVSVFSDISV 455 Query: 163 LREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDR 222 ++E L + DSLTGLPNR F +L AR ++ + FIDLD FK+IND Sbjct: 456 IKEKEKQLRHLANHDSLTGLPNRLLFFNSLENSLERARRRRMEVALMFIDLDRFKIINDT 515 Query: 223 FGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN--NENADISSLRERIQQQI 280 GH +GD+ L V RL + +++ RLGGDEF +SL + D ++ ++ + I Sbjct: 516 MGHEAGDILLKTVARRLLEAVRGEDMVARLGGDEF-TISLEELSNTEDAAAKAGKLIETI 574 Query: 281 RGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKT 331 R H+G ++ AS+GI + +A + AAD AMY+ K+ + T Sbjct: 575 RQPVHIGGHEIVC-SASIGIAIFPHDADNAQNLARAADAAMYRAKELHRNT 624 >UniRef50_Q2RWY3 Diguanylate cyclase/phosphodiesterase n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RWY3_RHORT Length = 683 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 54/150 (36%), Positives = 84/150 (56%), Gaps = 1/150 (0%) Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 D+LTGLPNR + L T + AR N ++ + F+DLD+FK +ND GH+ GD L QV Sbjct: 263 DTLTGLPNRVLFQDRLLTALASARRRNDQLAVLFVDLDHFKTVNDSLGHSFGDQLLQQVA 322 Query: 237 ERLNTLQQNGEVIGRLGGDEFLV-VSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPG 295 RL+ ++ + + R+GGDEF + ++ + D + + RI + +R + L G Sbjct: 323 TRLSQCLRDSDTLARMGGDEFTIALTGDGHQRDYAMIANRILETLRRPFTLEGGHEVLIG 382 Query: 296 ASLGIVEVDPETTDADSALHAADIAMYQEK 325 +S+GI + D D+ L AD AMY+ K Sbjct: 383 SSIGITLFPNDAEDVDTLLRNADTAMYRAK 412 >UniRef50_B8DLV2 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DLV2_DESVM Length = 896 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 103/182 (56%), Gaps = 2/182 (1%) Query: 160 VEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLI 219 + +L+ + + Q++ D+LTGLPNR + + L + AR + K+ + +DLDNFK + Sbjct: 444 ITELKAKESQIQHQAHHDALTGLPNRALLRDRLGMAINGARREDRKVAVLSVDLDNFKQV 503 Query: 220 NDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQ 278 ND GH GD++L Q E++ + + + + R+GGDEF+VV + E D + + ER+ Sbjct: 504 NDSLGHMVGDIYLQQAAEQMRQMVRPQDTLARVGGDEFVVVLQDVEGERDAAQVAERLLA 563 Query: 279 QIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPA 338 + + + +L+ GAS+GI + D D+ + ADIAM + K+ ++ + PA Sbjct: 564 RFTDPVRVQEHELFV-GASVGIALFPDDGDDPDTLVRNADIAMSRAKEQGKRRYHLFTPA 622 Query: 339 LH 340 ++ Sbjct: 623 MN 624 >UniRef50_A8VVQ3 Putative uncharacterized protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VVQ3_9BACI Length = 775 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 91/173 (52%), Gaps = 5/173 (2%) Query: 157 EALVEQ----LREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFID 212 E+LVEQ L++A + + D LTGLPNRR I L L + N + FID Sbjct: 327 ESLVEQKTGDLQKALNKMEHVAKYDHLTGLPNRRMIVNELEMLIDASEKKNETFALLFID 386 Query: 213 LDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSL 272 +D FK +ND GH +GD L QV E+L ++ + IGR GGDEF+++ + + +I + Sbjct: 387 MDRFKTVNDTLGHKAGDELLKQVAEKLKQSVRDADKIGRYGGDEFIILLKDVDEKEIRQV 446 Query: 273 RERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 RI+ ++L + +Y S+G+ + T A + ADIAMY K Sbjct: 447 ATRIKHTFIHAFNL-EGKAFYTSPSIGVSMYPEDGTSAIDLIKYADIAMYDAK 498 >UniRef50_B4B886 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4B886_9CHRO Length = 1121 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 72/220 (32%), Positives = 116/220 (52%), Gaps = 15/220 (6%) Query: 110 LSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAA 169 L P+ + G G ++SE + SE V Q A ++++I + QLRE+ Sbjct: 899 LCVPM-MAQGKAVGLFYLSTSEPEKISE----VKQQLARAVSEHISLALVNLQLRES--- 950 Query: 170 LIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGD 229 L +QS DSLTGL NRR + E+L +LA+ H + + ID+D+FK ND FGH +GD Sbjct: 951 LESQSIKDSLTGLYNRRYMEESLKREINLAQRKQHPVGLIMIDVDHFKQFNDNFGHKAGD 1010 Query: 230 LFLIQVGERLNTLQQNGEVIGRLGGDEFLVV----SLNNENADISSLRERIQQQIRGEYH 285 L L +VG L ++G++ R GG+EFL++ SL++ +R+ I+Q +Y+ Sbjct: 1011 LILHEVGNFLMANVRSGDIACRYGGEEFLLILPEASLSDSQQRAEQIRKGIKQLNFQQYN 1070 Query: 286 LGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 L S+G+ ++ + +AD+A+YQ K Sbjct: 1071 SAFTSL---TVSIGVACFPAHGKQGETLIQSADMALYQAK 1107 >UniRef50_Q8DKE8 Tlr0911 protein n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=Q8DKE8_THEEB Length = 1240 Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 95/187 (50%), Gaps = 14/187 (7%) Query: 164 REANAALIAQSYTDSLTGLPNRRAIFENLTTLF-SLARHLNHKIMIAFIDLDNFKLINDR 222 ++ LI + D+LTGLPNR + E L + R + + FID+D FK +ND Sbjct: 805 KQMEEQLIHDALHDALTGLPNRTLLQERLKHCWRQYQRRRDRPFAVVFIDIDRFKRVNDS 864 Query: 223 FGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVS--------LNNENADISSLRE 274 GH +GD LI + +R+ T+ + G+ + RL GDEF+V+ + A ++ L Sbjct: 865 LGHQAGDQLLITLAQRMQTVVRQGDTLARLSGDEFVVLCEDLDPQQMVAQVQAQVTDLER 924 Query: 275 RIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFV 334 IQ+ + + HL V AS+G+ D E T A + L ADIAMYQ KK + Sbjct: 925 VIQEPLIIDGHLLSV-----SASIGVAFSDREATSAATLLRDADIAMYQAKKQGLGQWCI 979 Query: 335 AHPALHS 341 P +H+ Sbjct: 980 FDPQMHT 986 >UniRef50_B8DQX2 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DQX2_DESVM Length = 936 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 95/180 (52%), Gaps = 4/180 (2%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 G+I + + + +++ A + Q+ D LTGLPNR+ IFE L + A K+ Sbjct: 476 GVILNCVGVFSDITDIKQKEAQITHQANHDDLTGLPNRKHIFELLHDAIARASVRGQKLA 535 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFL-VVSLNNEN 266 + FID+D FK IND + H +GD L V RL + G+++GRLGGDEF+ V ++ Sbjct: 536 VVFIDMDGFKFINDSYDHATGDQLLCDVARRLRAALRPGDMLGRLGGDEFVAAVGGISDK 595 Query: 267 ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTD-ADSALHAADIAMYQEK 325 + + R+ + + G + AS G V V P+ D A++ L ADIAMY+ K Sbjct: 596 GHLDGIMRRLFETFAEPFEYGGMGFSVT-ASFG-VSVYPDDGDSANALLSRADIAMYRAK 653 >UniRef50_B5ZRI4 Diguanylate cyclase n=9 Tax=Rhizobiales RepID=B5ZRI4_RHILW Length = 417 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 79/283 (27%), Positives = 126/283 (44%), Gaps = 33/283 (11%) Query: 70 VSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITT------FLSTPIHLPDGSFYG 123 VS D + C+ +D C V D D +++ +T + P+ G G Sbjct: 78 VSLDDTFCRCVVD--CDEPVIVQDATKDARFSKHSAVTGEDHIRFYAGVPLRTKAGHMIG 135 Query: 124 TLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLP 183 T+CA R + R +LQ AG I+ L+ + TDSLT Sbjct: 136 TVCAIDRRPRSFGSRDLDILQELAGAAMDRIE--------------LVQSAATDSLTEAM 181 Query: 184 NRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQ 243 RRA + L SLA H + D+D+FK +ND +GH +GD L V Sbjct: 182 TRRAFKQEADQLISLALRHQHDLSCIAFDIDHFKKVNDTYGHAAGDAVLKAVASICKATL 241 Query: 244 QNGEVIGRLGGDEFLVVSLNNENADISSLRERIQ-----QQIRGEYHLGDVDLYYPGASL 298 + G++ GR+GG+EF V+ + + ++ E+++ Q IRG++ +V + ++L Sbjct: 242 RAGDLFGRIGGEEFAVILPHVDREGAFAVAEKLRAAIAAQPIRGDHGSLNVTASFGTSAL 301 Query: 299 GIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 IV + ET L AD AMYQ KH + V+ ++H+ Sbjct: 302 SIVSKEIETL-----LAQADAAMYQ-AKHAGRNRCVSWSSIHA 338 >UniRef50_Q0EYI6 Sensory box-containing diguanylate cyclase, putative n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EYI6_9PROT Length = 800 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 111/217 (51%), Gaps = 9/217 (4%) Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 +G +G L + E ++ L+ A +A I+++ E+L++ ++ D Sbjct: 585 EGELFGVLNIYVDVEHVSDESEKKFLKTVADTLAVVIERKQSEERLQQL-------AHND 637 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 LTGLPNR ++ L +LA+ + F+DLD+FK IND GH+ GDL L + Sbjct: 638 MLTGLPNRTLFYDRLNQALALAQRHKQAFAVMFLDLDHFKEINDTLGHDMGDLLLREAAT 697 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYPGA 296 RL + ++ + + R+GGDEF ++ + + + E++ ++++ + L ++ + G Sbjct: 698 RLRSCVRSMDTVARMGGDEFTIILTETAVREAVEKVAEKLLRELQQPFSLNG-EIRHVGC 756 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPF 333 S+GI D+++ + ADIAMY K+ + F Sbjct: 757 SIGIALYPKHGLDSETLIKHADIAMYDAKRERNSYCF 793 >UniRef50_Q0B027 Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B027_SYNWW Length = 319 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/167 (34%), Positives = 95/167 (56%), Gaps = 4/167 (2%) Query: 161 EQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLIN 220 EQ+R A +++ D+LTGLPNR ++ L S+A+ + + F+DLD FK +N Sbjct: 141 EQVRAAEKINRFKAFHDALTGLPNRYLFYDRLDNAISMAQRNKEMLAVVFLDLDGFKEVN 200 Query: 221 DRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVV--SLNNENADISSLRERIQQ 278 D +GH +GD L V ERL L + + + RLGGDEFL + + +E AD +++ ++I Sbjct: 201 DNYGHEAGDHLLQVVAERLRELLRESDTLARLGGDEFLFIFPQIKSE-ADAATIAKKILT 259 Query: 279 QIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 + + ++Y AS+GI + ++ + ++ AD+AMYQ K Sbjct: 260 ALANPFMFWGREVYLT-ASIGISLYPKDAKNSRNLINKADLAMYQVK 305 >UniRef50_Q88QU8 Sensory box protein n=22 Tax=Gammaproteobacteria RepID=Q88QU8_PSEPK Length = 1247 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 99/178 (55%), Gaps = 4/178 (2%) Query: 150 IAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFEN-LTTLFSLARHLNHKIMI 208 I ++ A + ++ A A L Q++ D LTGLPNR +FEN L + + A+ N + + Sbjct: 783 ITHFVAVFADISSIKHAQAKLDYQAHHDPLTGLPNR-TLFENRLQGVLTCAQVSNRQGAV 841 Query: 209 AFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENA 267 F+DLD FK IND GH GDL L + +RL ++ + + RLGGDEF+++ ++ + Sbjct: 842 LFLDLDRFKHINDSLGHPVGDLLLKGIAQRLKEQVRDVDTVARLGGDEFIILLPGLHKPS 901 Query: 268 DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 D S++ ++ + G+ + ++ AS+GI + TD + + AD AMY+ K Sbjct: 902 DASTIANKLLACFNAPFQAGEHE-FFTSASIGISLYPQDGTDVSTLIRNADAAMYRSK 958 >UniRef50_A6VUG3 Diguanylate cyclase/phosphodiesterase n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VUG3_MARMS Length = 731 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 75/191 (39%), Positives = 102/191 (53%), Gaps = 9/191 (4%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 L A IQ L + ++E A L +Y D LTGLPNRR + ++L +L + K + Sbjct: 277 ALYAILIQPLKLRKLVKEKTAELQELAYKDPLTGLPNRRFLQDSLPK--TLHNNQRRKRI 334 Query: 208 IAFI--DLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEF--LVVSLN 263 AFI DLDNFK IND GH+ GD LI VG+RLN L+ +++ RLGGDEF L+ + Sbjct: 335 SAFIYFDLDNFKRINDTIGHDVGDQVLIIVGDRLNKLKAMSDLVVRLGGDEFGILLGDIG 394 Query: 264 NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQ 323 +E S RI + IR + D Y SLGI + D + + AD+A+YQ Sbjct: 395 DEK-QASEQANRILESIRTPIKM-DSREYILSTSLGIAMIPEHGYDLVTIMQNADMALYQ 452 Query: 324 EK-KHKQKTPF 333 K K K + F Sbjct: 453 AKLKGKNQYAF 463 >UniRef50_B6BLX7 Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BLX7_9PROT Length = 390 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 96/179 (53%), Gaps = 6/179 (3%) Query: 155 QKEALVE---QLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFI 211 + E L+E QL +AN L +++ D LT +PNR + E L + + A H + + FI Sbjct: 204 EHEKLLETSAQLEKANEKLKYRAHHDELTDIPNRYLLKEELARITAYAIRHKHSVALLFI 263 Query: 212 DLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLV-VSLNNENADIS 270 DLD FK +ND +GH GD L V R+ +L + ++I R+GGDEF V + ++ + Sbjct: 264 DLDGFKAVNDNYGHAKGDEVLQTVASRIKSLLRKEDIIARIGGDEFAVAIGTLSDLVYVE 323 Query: 271 SLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQ 329 + +RI ++I +Y + GAS+GI T+ DS + AD AMY KK + Sbjct: 324 KVAKRIIKEISKDYE--GLPASSVGASIGISIFPEHATNIDSLFNYADKAMYSIKKSSK 380 >UniRef50_A6QAC3 Putative uncharacterized protein n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QAC3_SULNB Length = 813 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/174 (37%), Positives = 99/174 (56%), Gaps = 5/174 (2%) Query: 155 QKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLA-RHLNHKIMIAFIDL 213 +K+A E L++ + L Q++ D+LTGLPNR + L LA RHL K+ + FIDL Sbjct: 369 KKKAQQELLKQKDI-LHHQAHHDALTGLPNRTLFSDRLEHGLKLAERHLG-KLALFFIDL 426 Query: 214 DNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSL 272 DNFK IND GH GD L+ V +RL + + + RLGGDEF ++ N ++ +S L Sbjct: 427 DNFKQINDSLGHQIGDKVLVVVSKRLKAKIRQEDTLARLGGDEFTIIMENFKDVQQVSVL 486 Query: 273 RERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 ++IQ+ + H+ LY S+GI +T +A+ + AD AMY+ K+ Sbjct: 487 AQKIQKVLNQPMHIEGHTLYI-SCSIGISFYPQDTQNANDLVKYADAAMYKAKE 539 >UniRef50_UPI0001C4305A PAS:GGDEF domain protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4305A Length = 389 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 49/149 (32%), Positives = 87/149 (58%), Gaps = 1/149 (0%) Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 ++ D LT LPNR++++ ++ + ++ H + FIDLD+FK++ND GH++GD+ L Sbjct: 200 AFYDELTDLPNRKSLYRHIEKALARSKRHQHTFSLMFIDLDDFKIVNDTMGHDAGDMLLK 259 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYY 293 +V RLN + ++I R+GGDEF+V+ +I S+ ERI +++ Y + + + Sbjct: 260 EVVSRLNESIREEDLISRIGGDEFIVLFEETCKEEIESIAERILERVAMPYKINEKEANI 319 Query: 294 PGASLGIVEVDPETTDADSALHAADIAMY 322 S+G+ + D D+ + AD AMY Sbjct: 320 -SLSIGVSMYPDDGEDKDTLIEHADQAMY 347 >UniRef50_Q2SFK1 FOG: EAL domain n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SFK1_HAHCH Length = 1092 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/194 (31%), Positives = 99/194 (51%), Gaps = 4/194 (2%) Query: 135 WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTT 194 WSE + G + ++ V + + A L ++ D+LTGLPNR + + + Sbjct: 473 WSELKVAPVTDAKGDVTHFVAILNDVTESIQYQAQLEYKTKYDNLTGLPNRNLLNDRIQQ 532 Query: 195 LFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGG 254 + A N +A DLDNFK IND GH +GD L +V E L + + G+ + RLGG Sbjct: 533 AIAYAARRNKGFALAVFDLDNFKYINDSMGHETGDQLLTEVAESLRSCLREGDTLARLGG 592 Query: 255 DEFLVVSLNNENAD--ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADS 312 DEF+++ ++ E D + + RIQQ + L D ++ S+G+ + + DA + Sbjct: 593 DEFVIL-MHKEECDRPLGLMLNRIQQLVSQPRRLKDKEILVT-PSIGVCQFPEDGEDAST 650 Query: 313 ALHAADIAMYQEKK 326 L AD AMY+ K+ Sbjct: 651 LLKNADTAMYKAKE 664 >UniRef50_Q1N5U4 Response regulator containing a CheY-like receiver domain and a GGDEF domain n=1 Tax=Bermanella marisrubri RepID=Q1N5U4_9GAMM Length = 596 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 74/270 (27%), Positives = 127/270 (47%), Gaps = 22/270 (8%) Query: 75 SLC-KRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKR 133 SLC + CF +W +A IT FLS AA S Sbjct: 336 SLCFLPVVGYFCFIKGATYAKWY-IVAWVIYAITLFLSA-------------LAALSNTI 381 Query: 134 QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANA--ALIAQ-SYTDSLTGLPNRRAIFE 190 +W + Q FA L+ ++ AL+E++++ N+ +++ Q S D LT L NRR + Sbjct: 382 EWGMKPLLAAQ-FASLLESFLLALALIEKVKQLNSEISIVTQDSMRDELTQLVNRRFLNN 440 Query: 191 NLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIG 250 +T +F RH + + + ID D FK IND++GH GD LI + + + + + +V+ Sbjct: 441 KITQIFKHLRH-DESLSLILIDADFFKQINDQYGHTVGDKVLIHLADTIREMTRPQDVVA 499 Query: 251 RLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDA 310 R GG+EF+++ + + ++ ER++ ++ + + + SLG+ + E D Sbjct: 500 RYGGEEFVMILRTFDQESVKTIAERLRHHVKTKPYKDEQYEITLSVSLGVCPI--EGRDL 557 Query: 311 DSALHAADIAMYQEKKHKQKTPFVAHPALH 340 A+ ADIA+Y K + T + P H Sbjct: 558 TQAIQYADIALYHAKSIGRDTACIYIPETH 587 >UniRef50_A4A4U0 Sensory box/GGDEF family protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4A4U0_9GAMM Length = 910 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 57/154 (37%), Positives = 83/154 (53%), Gaps = 2/154 (1%) Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 +Y DSLTGL R +FE L + AR + FIDLD FK IND GH++GD L+ Sbjct: 471 AYFDSLTGLSQRGYLFERLHEMVRTARRRQEGFAVLFIDLDKFKEINDSLGHDAGDELLV 530 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLY 292 V RL + + + RLGGDEF +V N + D++ + +R+ Q+ + + Sbjct: 531 TVASRLRAAARESDFVARLGGDEFCMVLDNVSSEVDVAEVAQRLLDQLSAAVEIHGTTV- 589 Query: 293 YPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 P AS+GI + A+S ++AAD AMY K+ Sbjct: 590 TPMASVGIAIYPVDGEAAESIMNAADNAMYAAKR 623 >UniRef50_O66912 Putative uncharacterized protein n=1 Tax=Aquifex aeolicus RepID=O66912_AQUAE Length = 336 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 98/180 (54%), Gaps = 2/180 (1%) Query: 149 LIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMI 208 LIA+ +K+ E+L++ AL Q++ D LTGL NRR+I + L F ++ + + Sbjct: 152 LIAKLQEKQKETERLKKELDALKKQAFIDYLTGLKNRRSIQKALEDYFKDYKNYGYPFSV 211 Query: 209 AFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD 268 +DL+NFK IND +GH GD L +GE L + + IGR GGDEFL++ + D Sbjct: 212 IMMDLNNFKEINDEYGHLVGDCILKGIGEILRKYLRAKDAIGRYGGDEFLIILPGVKLED 271 Query: 269 ISSLRERIQQQIRGE-YHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKH 327 ++ R++ I+ ++ D +L AS GI+EV+ + L D +Y+ KK+ Sbjct: 272 AVNIARRLKTVIQNHTFYCEDKEL-KVSASFGILEVNENFNSPEEILKEVDKKLYEAKKN 330 >UniRef50_C4L7R2 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L7R2_TOLAT Length = 658 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 65/186 (34%), Positives = 97/186 (52%), Gaps = 6/186 (3%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 G + Y+ + REA A + ++ D LT LPNR + E+ T +LAR ++ Sbjct: 462 GNVMNYVGMFLDISARREAEARIQYLAHHDYLTNLPNRLLLVEHATQALTLARRYKRRMA 521 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA 267 I +IDLD FK IND++GHN GD+ L V +RL ++ + + + R GGDEF++ L E Sbjct: 522 IFYIDLDRFKPINDQYGHNVGDVILKTVAQRLLSIVRESDTVCRQGGDEFVI--LLPEFM 579 Query: 268 DISSLRERIQQQIRGEYHLGDVDLYYP---GASLGIVEVDPETTDADSALHAADIAMYQE 324 D SL E + ++R E + Y AS+GI D+ + +AD AMY Sbjct: 580 DTDSL-EILAIKLRDEIQKPSMANGYQLTISASIGIATYPDNGDTVDAIIQSADTAMYSA 638 Query: 325 KKHKQK 330 K K+K Sbjct: 639 KADKEK 644 >UniRef50_A4BJ07 Signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like n=1 Tax=Reinekea blandensis MED297 RepID=A4BJ07_9GAMM Length = 483 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 89/165 (53%), Gaps = 14/165 (8%) Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 QS TD LTGL NR + E L H H I F+DLD FKL+ND++GH GDL L Sbjct: 315 QSTTDPLTGLLNRIGLSERYQHLC----HQQHPIACLFLDLDGFKLVNDQYGHAIGDLVL 370 Query: 233 IQVGERLNTLQQNGEVIGRLGGDEFLVV-SLNNENADISSLRER----IQQQIRGEYHLG 287 + +R ++ + I R+GGDEF++V +D+ L +R +++ I+ E H+ Sbjct: 371 HIIAKRFEGCLKSTDAIARIGGDEFVIVFPAPGHPSDLDELCDRLESAVKRPIQVEQHVA 430 Query: 288 DVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTP 332 +V G S+G+ +P+T D L AD AMY+ K ++ P Sbjct: 431 NV-----GVSIGLTLAEPDTLSLDQLLMQADRAMYRVKSTRKSKP 470 >UniRef50_B5XPJ6 GAF domain/diguanylate cyclase (GGDEF) domain protein n=5 Tax=Klebsiella RepID=B5XPJ6_KLEP3 Length = 323 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 16/226 (7%) Query: 106 ITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLRE 165 I + P+ LPDG+ G+ C + R +S Q+L A ++ E Sbjct: 110 IRFYAGYPVQLPDGATVGSFCLMDHQPRSFSAHEMQILSDLAAIV--------------E 155 Query: 166 ANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGH 225 ++ + +D LTGL NRR A+ + +AF+DLD FK IND +GH Sbjct: 156 DEFKVLDAATSDELTGLFNRRGFLTLAEYALLTAQRRQEPVSLAFVDLDRFKHINDTWGH 215 Query: 226 NSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYH 285 GD LI + + + + +++ R GGDEF+++ N D ++ E + + ++ Sbjct: 216 EEGDRALIAIADLMKAAFRESDILARQGGDEFIILFANTSRHDAATAMETLSHNV-ARFN 274 Query: 286 LGDVDLYYPGASLGIVEVDPETTDADSALHA-ADIAMYQEKKHKQK 330 + S G VE DP + + +AL A AD MYQ K+ + + Sbjct: 275 QQAAHPWQLAFSWGCVEYDPASHPSLNALVATADRLMYQAKQKQGR 320 >UniRef50_C7R8B2 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R8B2_KANKD Length = 427 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 97/187 (51%), Gaps = 8/187 (4%) Query: 150 IAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIA 209 IA+ I + +EQ E Q++ D+LT LPNR + L LA + ++ + Sbjct: 247 IARDITERKFIEQQVEH------QAHYDTLTDLPNRSLFSDRLEQAIRLAHRQHEQLALL 300 Query: 210 FIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADI 269 F+DLD FK +ND +GH GD+ L QV +R+ + + +GR+GGDEFLV+ + E+ D Sbjct: 301 FLDLDKFKPVNDNYGHAIGDILLQQVAQRMKDCLRESDTVGRIGGDEFLVLLPHVESVDS 360 Query: 270 SS-LRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHK 328 ++ + E++ Q I + + +D+ S+GI + AD AMY+ K K Sbjct: 361 ATHIAEKLLQAISSPFRINRIDIEI-SCSIGIALYPTHGNTVLELIQVADQAMYKAKNQK 419 Query: 329 QKTPFVA 335 FVA Sbjct: 420 GNLVFVA 426 >UniRef50_C3KAX1 Putative GGDEF domain signalling protein n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3KAX1_PSEFS Length = 388 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/177 (32%), Positives = 90/177 (50%), Gaps = 3/177 (1%) Query: 159 LVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKL 218 L Q+ A+ + TD LTGL NRRA FE+ L+ RH + +D+D+FK Sbjct: 214 LTRQMERAHTISTRAAQTDELTGLMNRRAFFEHAQVLYEQCRHNRQPLCALMMDMDHFKQ 273 Query: 219 INDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQ 278 IND +GH +GD L Q+G ++ + +V GRLGG+EF V+ N ++ E++ + Sbjct: 274 INDTYGHQAGDQVLRQIGGVISASFRQADVYGRLGGEEFAVLLPNTSLDTARTIAEQLVK 333 Query: 279 QIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVA 335 I G L ++ ASLG+ + D ++ AD A+Y+ K + VA Sbjct: 334 AISG---LASEPVHGLSASLGVASTHTQDQDLHGLMNTADKALYRAKAQGRNQVAVA 387 >UniRef50_D2SGK4 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SGK4_9ACTO Length = 898 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 120/258 (46%), Gaps = 27/258 (10%) Query: 71 SWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASS 130 SW +C D+N P R AAR+ G+ + P+ L L +S Sbjct: 370 SW---ICDVTTDDN------FPRR----AAARDSGLAAAFAFPV-LVGSEVTAVLEFFTS 415 Query: 131 EKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFE 190 E Q + +V+ + + +++E A L + D LTGLPNR + + Sbjct: 416 EPLQPDDALCEVMGQIGTQLGRVVEREL-------AQGRLTHHALHDPLTGLPNRVLLLD 468 Query: 191 NLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIG 250 L +LA+ + +AF+DLD+FKLIND GH +GD + RL + + G+ + Sbjct: 469 RLEV--ALAQRSRGGVAVAFVDLDHFKLINDSLGHAAGDTVITAAATRLRAVVRPGDTVA 526 Query: 251 RLGGDEFLVV--SLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETT 308 R GGDEF+V+ S+ +E D+ L ER+ + + L D + AS+GI Sbjct: 527 RFGGDEFVVLAESVVDER-DVEGLAERLAGALAEPFDLAG-DEVFVTASIGIAVSSGTGG 584 Query: 309 DADSALHAADIAMYQEKK 326 DA L AD AMY+ K+ Sbjct: 585 DAHGLLRDADAAMYRAKE 602 >UniRef50_Q21SZ9 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=3 Tax=Proteobacteria RepID=Q21SZ9_RHOFD Length = 1169 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 98/202 (48%), Gaps = 9/202 (4%) Query: 147 AGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLT-TLFSLARHLNHK 205 G++ Y+ + + + A + ++ D TGLPNRR + + L L + ARH Sbjct: 712 GGIVTHYVGTFMDITRRKAAEDEIRNLAFFDLQTGLPNRRLLLDRLQQALAASARHRRQG 771 Query: 206 IMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVV----- 260 ++ IDLDNFK +ND GH+ GDL L QV +RL + G + RLGGDEF+V+ Sbjct: 772 ALL-LIDLDNFKTLNDTLGHDKGDLLLQQVAQRLASCVHEGGTVARLGGDEFVVMLENLS 830 Query: 261 -SLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADI 319 L +L +RI ++ Y L + Y AS+GI + + L AD+ Sbjct: 831 EHLEAAATQAETLAKRILASLKQTYSLDGYE-YQSTASIGITLFSEQQETTEDLLKRADL 889 Query: 320 AMYQEKKHKQKTPFVAHPALHS 341 AMYQ K + T P + + Sbjct: 890 AMYQAKAVGRNTLRFFDPEMQA 911 >UniRef50_Q0F205 Response regulator containing a CheY-like receiver domain and a GGDEF domain n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F205_9PROT Length = 592 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 60/155 (38%), Positives = 85/155 (54%), Gaps = 2/155 (1%) Query: 176 TDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQV 235 TD+LTG NRRA FE+ T F AR N + + IDLD FK IND +GH +GD L+ V Sbjct: 430 TDALTGALNRRACFESGETEFDRARRYNTPLAVVMIDLDLFKSINDNYGHATGDAVLVAV 489 Query: 236 GERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQI-RGEYHLGDVDLYYP 294 E L + + + IGR+GG+EF+V+ D ++L ER + I + E L D+ + Sbjct: 490 VETLRGMTRTVDTIGRIGGEEFIVLLPQTSLQDAAALTERYRGAIGQLEVTLDDLAIKVT 549 Query: 295 GASLGIVEVDPETTDADSALHAADIAMYQEKKHKQ 329 AS G+ VD A+ AD A+Y+ K + Sbjct: 550 -ASFGVACVDVTGETLTQAIGRADAALYRAKSRGR 583 >UniRef50_Q1LL50 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Cupriavidus metallidurans CH34 RepID=Q1LL50_RALME Length = 873 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 66/225 (29%), Positives = 109/225 (48%), Gaps = 10/225 (4%) Query: 105 GITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLR 164 G+ STP+ DG GT +E R E ++ + A L A + ++ E++ Sbjct: 372 GMAATWSTPVRAADGRVLGTFALCFNEPRLPDGFHENLVGVAADLCALALVRDQTQERIH 431 Query: 165 EANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFG 224 +Y D+LTGLPNR+ + + A + + FI+L+NFK +ND G Sbjct: 432 RL-------AYYDALTGLPNRQLLLSRADDAVARANAHGTPLALLFINLNNFKRVNDVQG 484 Query: 225 HNSGDLFLIQVGERL---NTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIR 281 H +GD FLI+V RL +GRL GDEF V+ + +A+ ++ + + + + Sbjct: 485 HGAGDRFLIEVASRLQFATAEHARDATVGRLSGDEFAVLLPGHGHAEALAIADELLRALD 544 Query: 282 GEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 + P AS+GI + +T D ++ LH AD+A+ Q +K Sbjct: 545 PPITVAHGLSPSPSASIGISMLTEQTRDRETLLHHADLAVCQARK 589 >UniRef50_UPI0001C313CD diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C313CD Length = 763 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 105/202 (51%), Gaps = 7/202 (3%) Query: 135 WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTT 194 W ++Q +G+ + ++ + V ++ L Q++ D LTGLPNR + + L Sbjct: 288 WGLWRYSLVQDESGIASHWVVQLLDVTSRKQFEQQLAHQAHHDPLTGLPNRALLTKRLQE 347 Query: 195 LFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGG 254 LAR + + + F+DLDNFK+IND GH++GD L V ERL + + +++ R GG Sbjct: 348 ALDLAREHDSGVAVIFVDLDNFKVINDSLGHDAGDRLLRNVSERLRRVLRPEDLLARFGG 407 Query: 255 DEFLVVSLNN--ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTD--A 310 DE L V L + + + +R+ +R + L D + + AS GI PE D Sbjct: 408 DE-LAVCLERVADTEPANRIADRMATALRAPFVL-DGEQRFVTASFGIALARPEDPDRSP 465 Query: 311 DSALHAADIAMYQEK-KHKQKT 331 D+ L AD AMY+ K + K +T Sbjct: 466 DTLLRDADAAMYRAKERGKART 487 >UniRef50_Q7P0M4 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7P0M4_CHRVO Length = 633 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 103/191 (53%), Gaps = 2/191 (1%) Query: 142 VLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARH 201 VLQ G I+ ++ + + +E A + + D+LT LPNR + + L A Sbjct: 168 VLQDGQGEISHFVALFTDISERKEQEARVQHMAEYDALTDLPNRVLVNDRLHQAIRQAEL 227 Query: 202 LNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEF-LVV 260 ++++ + F+DLD+FK IND GH +GD L +V RL + + +GR GGDEF L++ Sbjct: 228 QHNQLAVLFVDLDHFKNINDTLGHCAGDELLKEVARRLAGAVRGLDTVGRTGGDEFVLIL 287 Query: 261 SLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIA 320 N+ + + + ERI + I+ + +G+ L G S+GI + + +D + L AD+A Sbjct: 288 PSINQPGEAAQIAERILRTIQQPFQIGEHSLVV-GCSIGISLMPDDGSDIQTLLMNADLA 346 Query: 321 MYQEKKHKQKT 331 MY K H + T Sbjct: 347 MYHAKAHGRNT 357 >UniRef50_Q1JX80 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JX80_DESAC Length = 678 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 2/173 (1%) Query: 160 VEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLI 219 + + +EA + +Y DSLTGL NR + L + + +R + + F+DLD FK + Sbjct: 238 ITRRKEAEERIRELAYYDSLTGLANRTLFNDRLDQVMARSRRRQSRFALMFLDLDRFKGV 297 Query: 220 NDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVV-SLNNENADISSLRERIQQ 278 ND GH GD L Q ERLN + + + RLGGDEF+++ S E+A++ + ++I + Sbjct: 298 NDTLGHAVGDAMLRQAAERLNECLRENDTVARLGGDEFVIILSDYKEDANLPRVADKILK 357 Query: 279 QIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKT 331 + + LG V Y S+GI + +A L AD+AMY K+ T Sbjct: 358 ALSSPFDLG-VREVYSSTSVGIAIYPDDGDEATDLLRHADMAMYAAKESGGDT 409 >UniRef50_C7RS22 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RS22_9PROT Length = 1006 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 7/184 (3%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 G++ Y+ + + A + ++ D+LTGLPNRR + + L + + + Sbjct: 551 GVVTHYVSALTDMSAHKAAQEEIRHLAFYDALTGLPNRRLLHDRLRVAIASSVRSERQGA 610 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN---- 263 + FIDLDNFK +ND GH+ GD L QVG+RL++ + G+ + RLGGDEF+V+ N Sbjct: 611 LLFIDLDNFKTLNDTLGHDMGDRLLQQVGQRLSSSVREGDTVARLGGDEFVVMLENLGER 670 Query: 264 -NENADISSL-RERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAM 321 E A S + E+I + + Y L D Y+ S+GI + D + AD+AM Sbjct: 671 PEEAAGQSRIVGEKIIKLLNRPYDLSGHD-YHNTPSVGITLFGGQQVGIDELMKRADLAM 729 Query: 322 YQEK 325 Y+ K Sbjct: 730 YEAK 733 >UniRef50_B0C4Z3 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor n=2 Tax=Cyanobacteria RepID=B0C4Z3_ACAM1 Length = 754 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 62/185 (33%), Positives = 98/185 (52%), Gaps = 4/185 (2%) Query: 159 LVEQLREANAALIAQSYTDSLTGLPNRRAIFENLT-TLFSLARHLNHKIMIAFIDLDNFK 217 + EQ R A A LI ++ D LTGLPNR + E ++ +L R +++ + FIDLD FK Sbjct: 283 ITEQKR-AQAQLIHDAFHDELTGLPNRNLMMERISQSLKRQHRTSDYQFALLFIDLDRFK 341 Query: 218 LINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERI 276 +IND GH GD L+ + L + + + RLGGDEF ++ + D + ERI Sbjct: 342 IINDSLGHIVGDQLLVAIAHLLENCVRTSDTVARLGGDEFTILLDGIQGIEDAIHVAERI 401 Query: 277 QQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAH 336 + ++ + +G+ + + G+S+GI + D L ADIAMY+ K + V Sbjct: 402 LETLKSPFQVGEHSV-FTGSSIGIAYNSVQYDDPTLLLRDADIAMYRAKSLGKGCFVVFS 460 Query: 337 PALHS 341 P +H+ Sbjct: 461 PEMHA 465 >UniRef50_Q2SIG3 FOG: GGDEF domain n=2 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SIG3_HAHCH Length = 673 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 89/151 (58%), Gaps = 2/151 (1%) Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 DSLTGL NRR + L ++AR K+ + ++D+D FK +ND +GH++GD L +V Sbjct: 497 DSLTGLANRRFLTAYLFQELAMARRRKRKLALLYLDMDRFKAVNDTYGHDAGDALLREVA 556 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISS-LRERIQQQIRGEYHLGDVDLYYPG 295 RL + + ++I RLGGDEF++V+L+++N + S+ L + + + Y LG + + Sbjct: 557 FRLKNVCRESDLISRLGGDEFVIVALDHKNLNNSARLAKSVVISLSRPYILGGAHI-HTS 615 Query: 296 ASLGIVEVDPETTDADSALHAADIAMYQEKK 326 S+GI + D + L AD AMY+ KK Sbjct: 616 PSIGIAVYPDDADDETTLLRYADEAMYEAKK 646 >UniRef50_Q1LL52 Diguanylate cyclase (GGDEF domain) n=2 Tax=Cupriavidus RepID=Q1LL52_RALME Length = 426 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 87/176 (49%), Gaps = 1/176 (0%) Query: 157 EALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNF 216 EA QL+ N +L ++ DSLTGL NR A E L A N + ++D D+F Sbjct: 238 EAWQNQLQHENRSLAHRASHDSLTGLLNRAAFTEALDLAVRTAAARNQYAAVLYLDSDDF 297 Query: 217 KLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLV-VSLNNENADISSLRER 275 K INDR+GH +GD L+ VG+RL + G+ + RLGGDEF V V+ D + E Sbjct: 298 KGINDRYGHAAGDAVLVAVGQRLRGCLREGDSVARLGGDEFAVLVNALRAPEDAVRIAEH 357 Query: 276 IQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKT 331 I + L D + S+G+ + + LH+AD AMY K+ T Sbjct: 358 ILNAMATPVCLADGTTIFAPLSIGLAVYPLHARNGTALLHSADAAMYGAKRQSGAT 413 >UniRef50_Q8D786 FOG: GGDEF domain n=3 Tax=Vibrio RepID=Q8D786_VIBVU Length = 662 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 54/153 (35%), Positives = 86/153 (56%), Gaps = 1/153 (0%) Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 ++ D+LTGL NR + L L + + + ++DLD FK IND FGH++GD L Sbjct: 487 AHHDALTGLANRAKLHRTLEDELKLCNFTHSEFALLYMDLDGFKFINDTFGHDAGDHVLK 546 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYY 293 V ERL ++G+++ RL GDEF+++ +N ++ L ERI + +R + + Sbjct: 547 VVSERLLNEVRSGDLVARLSGDEFVLLIKRADNHSVTLLSERILESLRQPIEYLNQTMQV 606 Query: 294 PGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 G S+G+ V P+ D + L +AD AMY+ KK Sbjct: 607 -GCSIGVKLVGPQEKDMERILKSADTAMYKAKK 638 >UniRef50_C8VZM6 Diguanylate cyclase with GAF sensor n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VZM6_DESAS Length = 336 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 116/232 (50%), Gaps = 9/232 (3%) Query: 100 AARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEAL 159 A R +G+ + + P+ + G + S++ +++ ++L+L +GLIA A+ Sbjct: 107 ACRQIGLNSMIVVPLIFRN-DIVGVIKVLSAKAGHFNDDNIKILELMSGLIAA-----AM 160 Query: 160 VEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLI 219 +R + L ++ DSLTG+ NR ++ L S A + I +D+D K I Sbjct: 161 FSAMRNEESELFYKATHDSLTGISNRSVFYDRLRQRLSQALRKHENFGIISLDMDGLKEI 220 Query: 220 NDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQ 278 ND +GH +GD + +V R+N+ + + + RLGGDEF +++ + D+ SL ERI Sbjct: 221 NDNWGHRAGDAAIKEVALRINSTLRESDTVSRLGGDEFGIIATTAVDRNDLRSLIERIDC 280 Query: 279 QIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQK 330 +I + D + AS+G + D D + AD +MY E K KQK Sbjct: 281 EIIKPFEFEDQKINLR-ASIGYALFSEDGIDLDVLIEKADKSMY-EVKRKQK 330 >UniRef50_B1YFU4 Diguanylate cyclase with GAF sensor n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YFU4_EXIS2 Length = 313 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 82/283 (28%), Positives = 128/283 (45%), Gaps = 38/283 (13%) Query: 53 IMFARNSQKMYIPENFTVSWDYSLCKRAID----ENCFFSDEVPDRWGDCI--AARNLGI 106 I + +M + E + +YSLC+R ID + + D DR D + + Sbjct: 47 IKLSEEQTRMPVTEGMVIDLNYSLCQR-IDFQTKQPLIYEDVTKDRSLDGMREVLEGANV 105 Query: 107 TTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREA 166 ++L PI L +G +GTLCA + E + ++ ++LQ L + Y++ E Sbjct: 106 QSYLGIPISLANGEKFGTLCAINDEVSLFESKSIELLQRIVRLFSYYLELERF------- 158 Query: 167 NAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHN 226 ++ D LT L NRR LT F + + + F+DLD FK +ND +GH+ Sbjct: 159 -------AWRDMLTDLYNRRY----LTHQFD--QQPETEGALFFLDLDGFKNVNDVYGHD 205 Query: 227 SGDLFLIQVGERLNTL--QQNGEVIGRLGGDEFLV--VSLNNENADISSLRERIQQQIRG 282 +GD L +V RL +L Q RLGGDEF++ +++ A I E + Sbjct: 206 AGDAVLQEVARRLKSLIAGQKEAYAVRLGGDEFVIRFTHFDSQQALIDQADEIL------ 259 Query: 283 EYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 L D Y S+GIV + + L ADIA+Y+ K Sbjct: 260 -VRLSTWDTYELSTSIGIVAYKDADSSLKTLLRQADIALYEAK 301 >UniRef50_A0YPT5 Serine/Threonine protein kinase and Signal Transduction Histidine Kinase n=8 Tax=Bacteria RepID=A0YPT5_9CYAN Length = 2038 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 92/163 (56%), Gaps = 4/163 (2%) Query: 164 REANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARH-LNHKIMIAFIDLDNFKLINDR 222 ++ LI+ + D+LTGLPNR + E+L + + N++ + F+D+D FK+IN+ Sbjct: 1600 KQMEEKLISDAQHDALTGLPNRLLLSEHLQQMIQRTQEEQNYRYAVLFLDIDRFKVINES 1659 Query: 223 FGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRG 282 GH GD LI + +RL ++I RLGGDEF+++ L+N ++ + RIQ + Sbjct: 1660 LGHLVGDQLLIAIAQRLKGCITQQDIIARLGGDEFIIL-LDNPEDEVRT-AARIQMALNA 1717 Query: 283 EYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 ++L + + S+GIV + T + L +ADIAMYQ K Sbjct: 1718 PFNLNGYKV-FNTVSIGIVSSNTTYTRPEELLQSADIAMYQAK 1759 >UniRef50_C6HTT7 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HTT7_9BACT Length = 860 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 83/151 (54%), Gaps = 2/151 (1%) Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 D+LTGLPNR + E L LA + + F+DLD FK +ND GH SGDL L++V Sbjct: 434 DALTGLPNRIHLIERLKQAIPLAERNGQHLALLFLDLDRFKGVNDSLGHASGDLLLVEVS 493 Query: 237 ERLNTLQQNGEVIGRLGGDEFL-VVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPG 295 +RL+ + G+ + R GGDEF+ ++ E D + E+I + + + +V ++ G Sbjct: 494 KRLSNCVRKGDTVARFGGDEFVFLLEGLEEREDAKPIAEKILGALNAPFEIDNVQVFMNG 553 Query: 296 ASLGIVEVDPETTDADSALHAADIAMYQEKK 326 S+GI + +D L AD AMY+ K+ Sbjct: 554 -SIGISTWPHDGESSDLLLRRADAAMYRAKE 583 >UniRef50_Q602I2 Sensory box protein/response regulator n=1 Tax=Methylococcus capsulatus RepID=Q602I2_METCA Length = 710 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 63/167 (37%), Positives = 88/167 (52%), Gaps = 5/167 (2%) Query: 164 REANAALIA-QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDR 222 ++A+ ALI QS D+LT LPNRR + E L A ++ + +IDLD+FK +ND Sbjct: 264 KKASEALIEFQSCYDALTRLPNRRLLAERLALASERAHRDRGRVALLYIDLDHFKEVNDT 323 Query: 223 FGHNSGDLFLIQVGERLNTLQQNGE--VIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQ 279 GH+ GD L+QV R+ + E + RLGGDEF V+ + E D + L I Sbjct: 324 LGHHQGDALLVQVAHRVRRCVRESETVTVARLGGDEFTVIVPDFEGMDEVERLARAIIDS 383 Query: 280 IRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 + + LGD L + AS+GI + D D L AD AMY K+ Sbjct: 384 LSEPFRLGD-QLAHVSASIGITVFPDDAADTDGLLRNADQAMYAAKR 429 >UniRef50_Q7UUK0 Putative uncharacterized protein n=1 Tax=Rhodopirellula baltica RepID=Q7UUK0_RHOBA Length = 739 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/162 (36%), Positives = 97/162 (59%), Gaps = 10/162 (6%) Query: 177 DSLTGLPNRRAIFENLTTLFS-LARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQV 235 D+LTGLPNR + + AR+ ++ + F+D+D+FKL+ND FGH++GD FL+ + Sbjct: 307 DALTGLPNRMLFNDRVQRCVDHQARNPQNRFAVIFMDVDDFKLVNDHFGHDAGDDFLVSI 366 Query: 236 GERLNT-LQQNGEVIGRLGGDEFLVVSLNNENADIS-SLRERIQQQIRGEYHLGDVDLYY 293 RL+T L+++ +I R+GGDEF V+ N + D + ++ R+ ++R + +GD ++ Sbjct: 367 ASRLDTSLRKSDAIIARMGGDEFAVLLENIRHVDEAVAVAMRLHDKMRAPFPVGDREILT 426 Query: 294 PGASLGIV--EVDPETT----DADSALHAADIAMYQEKKHKQ 329 AS+GIV E DPE++ + L AD AMY K + Sbjct: 427 -RASMGIVVSEFDPESSVPQATGEELLVRADTAMYFAKNQSE 467 >UniRef50_A1K5S9 GGDEF/EAL-domain containing protein n=1 Tax=Azoarcus sp. BH72 RepID=A1K5S9_AZOSB Length = 1090 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 61/168 (36%), Positives = 87/168 (51%), Gaps = 2/168 (1%) Query: 160 VEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLI 219 V REA A + ++ DSLTGLPNR A + SLA+ H + + F+DLDNFK + Sbjct: 649 VTSAREAEAHIQYLAHYDSLTGLPNRSAWMNQARSALSLAQRHQHILAVLFLDLDNFKTV 708 Query: 220 NDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQ 278 ND GH GD L V +RL + + RLGGDEF+ + A D +++ ++ Sbjct: 709 NDSLGHPVGDRLLAAVAQRLAHCLREEDSFARLGGDEFVALLPRVTRAEDAAAVARKMLD 768 Query: 279 QIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 + + D +L P S+GI + TD D+ L AD AMY K+ Sbjct: 769 ALATPVVIDDHEL-APSVSIGISLFPSDGTDVDTLLKHADTAMYGAKE 815 >UniRef50_A4VKH7 Sensory box/GGDEF family protein n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VKH7_PSEU5 Length = 708 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 62/166 (37%), Positives = 88/166 (53%), Gaps = 3/166 (1%) Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 Q+ D LTGLPNR + + + + A L + + + FIDLDNFK IND GH +GD L Sbjct: 278 QANHDLLTGLPNRILLNDRIEQGLARAARLGYYLTLVFIDLDNFKFINDGLGHVAGDELL 337 Query: 233 IQVGERLNTLQQNGEVIGRLGGDEF-LVVSLNNENADISSLRERIQQQIRGEYHLGDVDL 291 + RL + + + R+GGDEF LV+ + + + SL ER+ +IR L + Sbjct: 338 KSIAARLAGSLRGSDTVARVGGDEFVLVLGDHYRISTVISLLERVLNEIRRPVTLAGRE- 396 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKH-KQKTPFVAH 336 + GASLG+ + DA + L ADIAMY KK + F H Sbjct: 397 FQVGASLGVAMFPDDGEDAQTLLKHADIAMYAAKKRGRNNFQFFTH 442 >UniRef50_Q7MNE5 GGDEF family protein n=8 Tax=Vibrionales RepID=Q7MNE5_VIBVY Length = 340 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 91/346 (26%), Positives = 150/346 (43%), Gaps = 45/346 (13%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 +Q++ +++ L K+Q L R+++ + E + + K+D + H+ +A N Sbjct: 14 NQLLGKLALGLEKDQ----LNREIVSLSEHLFGSRKASILKLDPQHNTLHLEYAPNLPDF 69 Query: 63 YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY 122 Y +AI+ E+ +R G C AA G + +S P+ Y Sbjct: 70 Y--------------NQAIE-----GVEIGERVGSCGAAAYSGKSVVVSDIESHPNWQPY 110 Query: 123 GTLCAASSEKRQWS----ERAEQVLQLFA---GLIAQYIQKEALVEQLREANAALIAQSY 175 L A++ WS R ++VL FA + ++ ++E + L A ++ + Y Sbjct: 111 AELAKAANVAACWSVPIVSRQDKVLGTFAIYSDMPSKPAKEELEILDLLAALYSIALEKY 170 Query: 176 -----------TDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFG 224 D LT NRR + L ARH + I FID+D FK INDRFG Sbjct: 171 HLEEQLHYHVNRDPLTQCYNRRIFYLESEPLLETARHSEYGIGCFFIDVDEFKYINDRFG 230 Query: 225 HNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEY 284 H+ GD LI + L VI R GGDEF+ + + +++Q +I+ + Sbjct: 231 HDVGDAVLINLANWLMAQFPQHAVISRYGGDEFVAICPFVHKQAFQAFYQQLQSKIKMFF 290 Query: 285 HLGDVDLYYPGASLGIVEVDPET-TDADSALHAADIAMYQEKKHKQ 329 + D Y S+G + E+ + D+ + ADI MYQ K+ Q Sbjct: 291 LIED---YSVSVSIGADYAEGESLANVDALIRQADICMYQVKRAHQ 333 >UniRef50_Q31NF7 Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=2 Tax=Synechococcus elongatus RepID=Q31NF7_SYNE7 Length = 889 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 60/163 (36%), Positives = 87/163 (53%), Gaps = 1/163 (0%) Query: 164 REANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRF 223 R+ AL Q+ D LTGL NR + E L LA+ + + FIDLD FK IND F Sbjct: 456 RDNEKALERQACYDFLTGLANRFLLQEQGQELLLLAKRSQEMLAVIFIDLDRFKDINDNF 515 Query: 224 GHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGE 283 GH GD L++V +R+ + ++I RL GDEF+V+ N + ++L +++QQQI Sbjct: 516 GHEVGDRVLVEVAQRIRQSVRQSDLIARLSGDEFVVILPNTDAQGAATLAQKLQQQITPP 575 Query: 284 YHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 +GD + SLGI + D + + AD AMY K+ Sbjct: 576 IAIGDRSIQLT-TSLGISLFPVDGDDLEILIKKADTAMYSIKE 617 >UniRef50_C5V280 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V280_9PROT Length = 725 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 67/202 (33%), Positives = 98/202 (48%), Gaps = 7/202 (3%) Query: 146 FAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHK 205 F G + Y+ + + + + + ++ D LT LPNRR + + L S + Sbjct: 254 FDGSVVHYVSSQVDITARKASEDRIHNLAFYDPLTQLPNRRLLLDRLRHSVSFSLRDGRH 313 Query: 206 IMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVV----- 260 + + FIDLD FK IND GH+ GDL L QV ER T + + + RLGGDEF+V+ Sbjct: 314 VALMFIDLDKFKKINDTLGHDIGDLLLKQVAERTLTCVRTCDTVARLGGDEFVVLLDGLA 373 Query: 261 -SLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADI 319 +L+ A + +I + Y L + Y GAS+GI D A+ L ADI Sbjct: 374 GNLHEAAAQAKQIGRKIIDTLNQSYDLAGHE-YQSGASIGIALFDEHCQTAEDLLKQADI 432 Query: 320 AMYQEKKHKQKTPFVAHPALHS 341 AMYQ KK + T P + + Sbjct: 433 AMYQAKKAGRNTLRFFDPEMQA 454 >UniRef50_C0GNF3 Diguanylate cyclase/phosphodiesterase n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GNF3_9DELT Length = 637 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 67/175 (38%), Positives = 91/175 (52%), Gaps = 16/175 (9%) Query: 163 LREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFI--DLDNFKLIN 220 ++E L AQ+ D LT LPNR IF+NL H N + AFI DLD FK +N Sbjct: 195 VQERTKQLEAQASYDRLTHLPNRDMIFKNLEKQIRWCLHTNDQCQAAFILVDLDMFKEVN 254 Query: 221 DRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLR--ERIQQ 278 + GH +GD L+QVGERL L + E++GRLGGDEF +V N+ ++ R + IQ Sbjct: 255 ESLGHQTGDRLLVQVGERLQELTDDCEILGRLGGDEFALVFTGNDVRKQATKRAGQMIQA 314 Query: 279 -----QIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHK 328 +++G+ L DV S+GI L AD+AMY K+ K Sbjct: 315 MARPFELQGQSLLLDV-------SIGIAIFPEHGKTLGQILSRADMAMYAAKRMK 362 >UniRef50_Q483V3 Sensory box/GGDEF/EAL domain protein n=5 Tax=Alteromonadales RepID=Q483V3_COLP3 Length = 692 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 61/155 (39%), Positives = 85/155 (54%), Gaps = 4/155 (2%) Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 Q+Y D+LT LPNR + L+ + + A N KI + F+DLD+FK IND GH GD L Sbjct: 265 QAYFDTLTSLPNRFLALDRLSQMLTEAERNNEKIAVLFLDLDDFKKINDSLGHEIGDKVL 324 Query: 233 IQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDL 291 IQ RL + + G+ +GRLGGDEF+V+ EN D + E + + R + + +L Sbjct: 325 IQSAHRLKQVLREGDTVGRLGGDEFIVLLRGVTENHDALVITENLLKSFREPFVIDGREL 384 Query: 292 YYPGASLGIVEVDPETTD-ADSALHAADIAMYQEK 325 S+G V + PE A L AD AMY+ K Sbjct: 385 MLT-LSIG-VAISPENGRCASDLLRNADTAMYKAK 417 >UniRef50_A4TXR0 PAS:GGDEF n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TXR0_9PROT Length = 823 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/231 (29%), Positives = 110/231 (47%), Gaps = 15/231 (6%) Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIA 172 DG + G +C +R+ + Q + + A G + Y+ + L+ AL Sbjct: 328 DGHWSGEIC----NRRRDGDVIPQWVSISAVRDANGSVGNYVGVYMDISALKRHEEALRH 383 Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 ++ D+LTGLPNR + + L + AR + +A++DLD FK +NDR GH+ GD L Sbjct: 384 MAHHDALTGLPNRLLLADRLDVALAKARRTGKMVAVAYVDLDGFKPVNDRLGHHVGDSVL 443 Query: 233 IQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYH----LGD 288 IQ G RL + + RLGGDE+++V + + D R+R+ Q + L + Sbjct: 444 IQAGRRLLDSVAADDTVARLGGDEYVLVMQDMD--DDQQCRQRLSQVLTAMAEPMRFLDE 501 Query: 289 VDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 AS+G + +D D+ L AD AMYQ K+ + + P L Sbjct: 502 DSAISITASIGAALYPNDDSDPDTLLRHADRAMYQAKQEGRNRLAMFDPQL 552 >UniRef50_B5YAI5 Response regulator n=2 Tax=Dictyoglomus RepID=B5YAI5_DICT6 Length = 718 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 67/221 (30%), Positives = 103/221 (46%), Gaps = 15/221 (6%) Query: 107 TTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREA 166 TT + P++ + SF+G + KR + ++ I+ IQ L E+L + Sbjct: 501 TTLIIKPLYFQE-SFFGYIVFEYGPKRGV------IYEILRSQISAAIQGAKLFEELNQL 553 Query: 167 NAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHN 226 + TD LT LPNRR I ++ + + + +DLDNFK+IND FGH Sbjct: 554 -------AITDPLTKLPNRRYIEAEFQKEIERSKRYSSPLSVMVLDLDNFKIINDTFGHQ 606 Query: 227 SGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVV-SLNNENADISSLRERIQQQIRGEYH 285 GD L ++ E L + +++GR GGDEF+++ N I + I+ + Sbjct: 607 YGDGVLKKIAENLRKYCRKVDIVGRFGGDEFVIILPETNLEKSIKVADKIIKNLEKMNIT 666 Query: 286 LGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 L + + Y S+GI T D + L ADIAMY KK Sbjct: 667 LPNGEKVYISVSIGIASYPETTKDPEKLLSLADIAMYNAKK 707 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P76245 Probable diguanylate cyclase yeaP n=68 Tax=Gamma... 475 e-132 UniRef50_C6DD18 Diguanylate cyclase with GAF sensor n=2 Tax=Pect... 348 2e-94 UniRef50_D1SQF1 Diguanylate cyclase with GAF sensor n=1 Tax=Acid... 347 3e-94 UniRef50_D0KWP1 Diguanylate cyclase with GAF sensor n=1 Tax=Halo... 341 2e-92 UniRef50_A9BYA4 Diguanylate cyclase with GAF sensor n=7 Tax=Prot... 340 3e-92 UniRef50_A9BW89 Diguanylate cyclase/phosphodiesterase with PAS/P... 327 3e-88 UniRef50_B3PC21 Sensory box protein n=1 Tax=Cellvibrio japonicus... 322 2e-86 UniRef50_B3EBJ4 Diguanylate cyclase/phosphodiesterase with PAS/P... 316 9e-85 UniRef50_B1KCF3 Diguanylate cyclase/phosphodiesterase with PAS/P... 315 1e-84 UniRef50_A4J477 Diguanylate cyclase/phosphodiesterase with PAS/P... 308 1e-82 UniRef50_Q31GH8 Diguanylate cyclase/phosphodiesterase with PAS/P... 307 5e-82 UniRef50_Q1JXC9 Diguanylate cyclase/phosphodiesterase with PAS/P... 305 2e-81 UniRef50_Q39X25 Diguanylate cyclase/phosphodiesterase n=2 Tax=Ge... 304 2e-81 UniRef50_A7BSH2 Diguanylate cyclase/phosphodiesterase n=1 Tax=Be... 304 2e-81 UniRef50_C8SP12 Diguanylate cyclase/phosphodiesterase with PAS/P... 303 8e-81 UniRef50_B1XYS1 Diguanylate cyclase/phosphodiesterase with PAS/P... 302 1e-80 UniRef50_Q1JZB1 Diguanylate cyclase/phosphodiesterase with PAS/P... 301 2e-80 UniRef50_C4ZL18 Response regulator receiver modulated diguanylat... 300 4e-80 UniRef50_C6WYR4 Response regulator receiver modulated diguanylat... 300 5e-80 UniRef50_C7RK65 Diguanylate cyclase/phosphodiesterase with PAS/P... 300 5e-80 UniRef50_B3EBJ5 Diguanylate cyclase/phosphodiesterase with PAS/P... 300 6e-80 UniRef50_A4C531 Sensory box protein n=1 Tax=Pseudoalteromonas tu... 298 2e-79 UniRef50_C5JAR6 Conserved uncharacterized protein n=1 Tax=uncult... 298 2e-79 UniRef50_C6NZE4 Diguanylate cyclase/phosphodiesterase with PAS/P... 297 3e-79 UniRef50_B8HP13 Diguanylate cyclase/phosphodiesterase with PAS/P... 297 3e-79 UniRef50_B4RZW0 GGDEF domain-containing PAS signal transduction ... 297 3e-79 UniRef50_C6NZ79 Diguanylate cyclase/phosphodiesterase with PAS/P... 297 3e-79 UniRef50_Q5P4W8 Putative uncharacterized protein n=2 Tax=Proteob... 297 5e-79 UniRef50_Q2W807 Predicted signal transduction protein n=4 Tax=Ma... 296 8e-79 UniRef50_B0TF94 Predicted signal transduction domain protein n=1... 296 1e-78 UniRef50_Q3JAR2 Diguanylate cyclase/phosphodiesterase with PAS/P... 295 1e-78 UniRef50_C4T5P6 Phosphodiesterase n=8 Tax=Yersinia RepID=C4T5P6_... 295 2e-78 UniRef50_C3X2S2 Diguanylate cyclase/phosphodiesterase with PAS/P... 295 2e-78 UniRef50_Q0EYI6 Sensory box-containing diguanylate cyclase, puta... 294 3e-78 UniRef50_C4K931 Diguanylate cyclase/phosphodiesterase with PAS/P... 294 4e-78 UniRef50_Q39R25 Diguanylate cyclase/phosphodiesterase with PAS/P... 293 7e-78 UniRef50_B8HWB1 Diguanylate cyclase/phosphodiesterase with FHA a... 293 7e-78 UniRef50_Q3IEZ9 Putative uncharacterized protein n=2 Tax=Pseudoa... 293 8e-78 UniRef50_A0L8P4 Response regulator receiver modulated diguanylat... 293 8e-78 UniRef50_Q2W1Z2 Hypothetical 1041 kDa protein in hypE 3'region n... 292 1e-77 UniRef50_Q1JX80 Diguanylate cyclase/phosphodiesterase with PAS/P... 292 1e-77 UniRef50_B3PHC9 Diguanylate cyclase (GGDEF) domain protein n=1 T... 292 1e-77 UniRef50_Q1PY13 Putative uncharacterized protein n=1 Tax=Candida... 292 2e-77 UniRef50_Q2W154 Putative uncharacterized protein n=2 Tax=Magneto... 291 3e-77 UniRef50_C5V330 Diguanylate cyclase with PAS/PAC and GAF sensors... 291 3e-77 UniRef50_C5D2J8 Diguanylate cyclase/phosphodiesterase with PAS/P... 290 4e-77 UniRef50_C6P3H7 Diguanylate cyclase/phosphodiesterase with PAS/P... 290 5e-77 UniRef50_C5V5K2 Diguanylate cyclase/phosphodiesterase with PAS/P... 290 5e-77 UniRef50_C7RN47 Diguanylate cyclase/phosphodiesterase with PAS/P... 290 6e-77 UniRef50_Q087W4 Diguanylate cyclase/phosphodiesterase with PAS/P... 289 8e-77 UniRef50_C6WWM6 Diguanylate cyclase/phosphodiesterase with PAS/P... 289 8e-77 UniRef50_B0CAC5 Diguanylate cyclase/phosphodiesterase n=7 Tax=ce... 289 1e-76 UniRef50_P72843 Regulatory components of sensory transduction sy... 289 1e-76 UniRef50_Q15SE8 Diguanylate cyclase with GAF sensor n=1 Tax=Pseu... 289 1e-76 UniRef50_Q2BJI5 Regulatory component of sensory transduction sys... 289 1e-76 UniRef50_Q2Y6N3 Response regulator receiver modulated diguanylat... 288 1e-76 UniRef50_Q0A572 Diguanylate cyclase/phosphodiesterase with PAS/P... 288 1e-76 UniRef50_C5V3L4 Diguanylate cyclase/phosphodiesterase with PAS/P... 288 1e-76 UniRef50_Q2YCL1 Diguanylate cyclase/phosphodiesterase with PAS/P... 288 2e-76 UniRef50_Q47UD6 Sensory box sensor/GGDEF/EAL domain protein n=1 ... 288 2e-76 UniRef50_Q7P0M4 Putative uncharacterized protein n=1 Tax=Chromob... 288 3e-76 UniRef50_C5S5K8 Response regulator receiver modulated diguanylat... 288 3e-76 UniRef50_B7KEH4 Diguanylate cyclase/phosphodiesterase with PAS/P... 287 3e-76 UniRef50_C6AS31 Diguanylate cyclase/phosphodiesterase with PAS/P... 287 4e-76 UniRef50_Q3SIW6 Putative diguanylate cyclase/phosphodiesterase (... 287 5e-76 UniRef50_Q607T2 Sensory box protein/GGDEF domain protein n=2 Tax... 286 9e-76 UniRef50_C6X941 Response regulator receiver modulated diguanylat... 285 2e-75 UniRef50_D1U882 Diguanylate cyclase/phosphodiesterase with PAS/P... 284 2e-75 UniRef50_C0N5T0 NMT1/THI5 like family n=1 Tax=Methylophaga thioo... 284 3e-75 UniRef50_Q1JY96 Diguanylate cyclase/phosphodiesterase with PAS/P... 284 3e-75 UniRef50_C6XBJ6 Diguanylate cyclase/phosphodiesterase with PAS/P... 284 3e-75 UniRef50_C6P1Q1 Diguanylate cyclase/phosphodiesterase with PAS/P... 284 3e-75 UniRef50_Q31EA2 Diguanylate cyclase/phosphodiesterase with PAS/P... 283 5e-75 UniRef50_Q47ZI3 Sensory box/GGDEF/EAL/CBS domain protein n=1 Tax... 283 6e-75 UniRef50_B9LZ98 Diguanylate cyclase/phosphodiesterase with PAS/P... 283 6e-75 UniRef50_C0Z6C0 Probable signaling protein n=1 Tax=Brevibacillus... 283 7e-75 UniRef50_C6P3H6 Diguanylate cyclase/phosphodiesterase with PAS/P... 283 7e-75 UniRef50_A4G4R7 Putative uncharacterized protein n=1 Tax=Hermini... 283 7e-75 UniRef50_C5V4D8 Diguanylate cyclase/phosphodiesterase with PAS/P... 283 8e-75 UniRef50_Q2BL49 Sensory box/GGDEF domain/EAL domain protein n=2 ... 282 9e-75 UniRef50_C7R8B2 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 282 1e-74 UniRef50_C4L987 Diguanylate cyclase/phosphodiesterase with PAS/P... 282 1e-74 UniRef50_A0L2H7 Diguanylate cyclase/phosphodiesterase with PAS/P... 282 1e-74 UniRef50_Q88QU8 Sensory box protein n=22 Tax=Gammaproteobacteria... 282 1e-74 UniRef50_C6WUG6 Diguanylate cyclase/phosphodiesterase with PAS/P... 282 1e-74 UniRef50_Q47BF2 Diguanylate cyclase/phosphodiesterase with PAS/P... 282 1e-74 UniRef50_Q0AAU4 Response regulator receiver modulated diguanylat... 282 1e-74 UniRef50_C7RMB6 Diguanylate cyclase/phosphodiesterase with PAS/P... 282 1e-74 UniRef50_Q2SFI2 FOG: EAL domain n=1 Tax=Hahella chejuensis KCTC ... 282 2e-74 UniRef50_Q1JVN0 Diguanylate cyclase/phosphodiesterase with PAS/P... 282 2e-74 UniRef50_UPI0001699903 diguanylate cyclase/phosphodiesterase wit... 281 2e-74 UniRef50_C5CF99 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 281 3e-74 UniRef50_C6MET2 Diguanylate cyclase/phosphodiesterase with PAS/P... 281 3e-74 UniRef50_Q21SZ9 Diguanylate cyclase/phosphodiesterase with PAS/P... 280 5e-74 UniRef50_B8DLV2 Diguanylate cyclase/phosphodiesterase with PAS/P... 280 7e-74 UniRef50_B9ZNJ0 Response regulator receiver modulated diguanylat... 280 7e-74 UniRef50_A1TX84 Response regulator receiver modulated diguanylat... 279 8e-74 UniRef50_Q47FU0 Diguanylate cyclase/phosphodiesterase with PAS/P... 279 1e-73 UniRef50_A1K5S9 GGDEF/EAL-domain containing protein n=1 Tax=Azoa... 279 1e-73 UniRef50_B8GM77 Putative uncharacterized protein n=1 Tax=Thioalk... 279 1e-73 UniRef50_Q46T37 PAS:GGDEF n=1 Tax=Ralstonia eutropha JMP134 RepI... 279 1e-73 UniRef50_Q47GC0 Diguanylate cyclase/phosphodiesterase with PAS/P... 279 1e-73 UniRef50_C6MBX5 Diguanylate cyclase/phosphodiesterase n=1 Tax=Ni... 279 1e-73 UniRef50_B7JB43 Sensory box-containing diguanylate cyclase, puta... 279 1e-73 UniRef50_A1WXR7 Diguanylate cyclase/phosphodiesterase with PAS/P... 278 1e-73 UniRef50_C5CTK8 Diguanylate cyclase/phosphodiesterase with PAS/P... 278 1e-73 UniRef50_Q1Q678 Putative uncharacterized protein n=2 Tax=Bacteri... 278 2e-73 UniRef50_C5T451 Diguanylate cyclase with PAS/PAC and GAF sensors... 278 2e-73 UniRef50_Q0F103 Putative diguanylate cyclase/phosphodiesterase (... 278 3e-73 UniRef50_B9Z8G8 Diguanylate cyclase/phosphodiesterase with PAS/P... 278 3e-73 UniRef50_Q31G31 Diguanylate cyclase/phosphodiesterase n=1 Tax=Th... 277 3e-73 UniRef50_C6X9G9 Diguanylate cyclase/phosphodiesterase with PAS/P... 277 4e-73 UniRef50_Q609J7 Sensory box protein n=1 Tax=Methylococcus capsul... 277 4e-73 UniRef50_C6P6X8 Diguanylate cyclase/phosphodiesterase with PAS/P... 277 4e-73 UniRef50_C5V280 Diguanylate cyclase/phosphodiesterase with PAS/P... 277 4e-73 UniRef50_B2UJT5 Diguanylate cyclase/phosphodiesterase with PAS/P... 277 5e-73 UniRef50_Q15V87 Diguanylate cyclase/phosphodiesterase n=1 Tax=Ps... 277 5e-73 UniRef50_C7RS22 Diguanylate cyclase/phosphodiesterase with PAS/P... 277 6e-73 UniRef50_C5S8G6 Diguanylate cyclase/phosphodiesterase with PAS/P... 276 1e-72 UniRef50_A0L914 Diguanylate cyclase/phosphodiesterase n=1 Tax=Ma... 276 1e-72 UniRef50_B6BGZ6 Diguanylate cyclase/phosphodiesterase n=1 Tax=Ca... 275 1e-72 UniRef50_Q2YAT8 Diguanylate cyclase/phosphodiesterase with PAS/P... 275 1e-72 UniRef50_B8FI78 Response regulator receiver modulated diguanylat... 275 1e-72 UniRef50_Q5P4K8 Putative sensory box/GGDEF family protein n=1 Ta... 275 2e-72 UniRef50_C6WZ79 Diguanylate cyclase/phosphodiesterase with PAS/P... 275 2e-72 UniRef50_Q602I2 Sensory box protein/response regulator n=1 Tax=M... 275 2e-72 UniRef50_A6WTB4 Diguanylate cyclase/phosphodiesterase with PAS/P... 275 2e-72 UniRef50_A4G3M6 Putative two-component response regulator n=1 Ta... 275 2e-72 UniRef50_Q2SLT6 Predicted signal transduction protein containing... 275 2e-72 UniRef50_A3Y6G1 Sensory box protein n=1 Tax=Marinomonas sp. MED1... 275 2e-72 UniRef50_B9L266 PAS domain S-box protein n=1 Tax=Thermomicrobium... 275 2e-72 UniRef50_C7LQB7 Diguanylate cyclase/phosphodiesterase n=2 Tax=De... 275 2e-72 UniRef50_A1TZQ7 Diguanylate cyclase/phosphodiesterase with PAS/P... 274 3e-72 UniRef50_D2M0Q8 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 274 3e-72 UniRef50_Q9I310 Uncharacterized signaling protein PA1727 n=74 Ta... 274 3e-72 UniRef50_A0KIJ4 MorA n=2 Tax=Aeromonas RepID=A0KIJ4_AERHH 274 4e-72 UniRef50_Q486Y3 GGDEF/GAF/EAL domain protein n=1 Tax=Colwellia p... 273 4e-72 UniRef50_A1U2T3 Response regulator receiver modulated diguanylat... 273 5e-72 UniRef50_B3E8F7 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 273 5e-72 UniRef50_B2T9B2 Diguanylate cyclase/phosphodiesterase with PAS/P... 273 5e-72 UniRef50_B7GKR7 Multidomain signal transduction protein (Contain... 273 5e-72 Sequences not found previously or not previously below threshold: UniRef50_C4LEB0 Diguanylate cyclase with PAS/PAC and GAF sensors... 320 5e-86 UniRef50_C6X6V4 Diguanylate cyclase/phosphodiesterase with PAS/P... 297 3e-79 UniRef50_Q47AF7 Diguanylate cyclase/phosphodiesterase with PAS/P... 297 3e-79 UniRef50_C4UW07 Phosphodiesterase n=1 Tax=Yersinia rohdei ATCC 4... 297 5e-79 UniRef50_A0L9S8 Diguanylate cyclase/phosphodiesterase with PAS/P... 294 2e-78 UniRef50_Q21SS1 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 292 1e-77 UniRef50_C5V1I4 Diguanylate cyclase/phosphodiesterase with PAS/P... 292 2e-77 UniRef50_Q13IZ7 Putative diguanylate cyclase(GGDEF)/ phosphodies... 292 2e-77 UniRef50_A1RPJ9 Diguanylate cyclase/phosphodiesterase with PAS/P... 291 2e-77 UniRef50_Q21V50 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 290 4e-77 UniRef50_A5GBG4 Response regulator receiver modulated diguanylat... 290 4e-77 UniRef50_A1K4Z0 EAL/GGDEF/PAS/PAC-domain containing signalling p... 290 6e-77 UniRef50_B4B341 Diguanylate cyclase/phosphodiesterase with PAS/P... 288 2e-76 UniRef50_Q39SC6 Diguanylate cyclase/phosphodiesterase (GGDEF & E... 288 2e-76 UniRef50_Q47IA0 Diguanylate cyclase/phosphodiesterase with PAS/P... 288 3e-76 UniRef50_C5V5L2 Response regulator receiver modulated diguanylat... 287 3e-76 UniRef50_B3E9L8 Diguanylate cyclase/phosphodiesterase with PAS/P... 287 3e-76 UniRef50_B8GSP1 Putative diguanylate cyclase n=1 Tax=Thioalkaliv... 287 3e-76 UniRef50_Q1H367 Diguanylate cyclase/phosphodiesterase (GGDEF & E... 287 6e-76 UniRef50_Q39WZ5 Diguanylate cyclase/phosphodiesterase with PAS/P... 286 6e-76 UniRef50_A0L9T5 Diguanylate cyclase/phosphodiesterase with PAS/P... 286 6e-76 UniRef50_Q21SE4 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 286 7e-76 UniRef50_C6WTL1 Diguanylate cyclase/phosphodiesterase with PAS/P... 286 7e-76 UniRef50_C6CAQ7 Diguanylate cyclase with PAS/PAC and GAF sensors... 286 7e-76 UniRef50_C0ZBT5 Probable signaling protein n=1 Tax=Brevibacillus... 286 9e-76 UniRef50_D0KJW8 Diguanylate cyclase with PAS/PAC and GAF sensors... 285 2e-75 UniRef50_A1KAZ1 Hypothetical signaling protein n=1 Tax=Azoarcus ... 285 2e-75 UniRef50_C6NZF1 Diguanylate cyclase/phosphodiesterase with PAS/P... 285 2e-75 UniRef50_C6MIL1 Diguanylate cyclase/phosphodiesterase with PAS/P... 284 2e-75 UniRef50_Q3A0D5 Diguanylate cyclase/phosphodiesterase with PAS/P... 284 3e-75 UniRef50_Q2RPL3 Diguanylate cyclase/phosphodiesterase n=1 Tax=Rh... 284 4e-75 UniRef50_C5V2Q6 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 283 4e-75 UniRef50_A0LKD9 Response regulator receiver modulated diguanylat... 283 6e-75 UniRef50_Q2W4Z4 Predicted signal transduction protein containing... 283 8e-75 UniRef50_C7RNA9 Diguanylate cyclase/phosphodiesterase with PAS/P... 282 1e-74 UniRef50_B5VXY3 Diguanylate cyclase/phosphodiesterase with PAS/P... 282 1e-74 UniRef50_Q5P4Q9 Putative uncharacterized protein n=1 Tax=Aromato... 282 2e-74 UniRef50_C6NZD9 Diguanylate cyclase/phosphodiesterase with PAS/P... 281 3e-74 UniRef50_A8H6Y6 Diguanylate cyclase/phosphodiesterase with PAS/P... 281 3e-74 UniRef50_D2UAD2 Hypothetical c-di-gmp phosphodiesterase or signa... 280 4e-74 UniRef50_A4TX60 PAS:GGDEF n=1 Tax=Magnetospirillum gryphiswalden... 280 4e-74 UniRef50_C5V1H2 Diguanylate cyclase/phosphodiesterase with PAS/P... 280 5e-74 UniRef50_C5V4E4 Diguanylate cyclase with PAS/PAC sensor n=2 Tax=... 280 5e-74 UniRef50_B3PKJ2 EAL domain protein n=1 Tax=Cellvibrio japonicus ... 279 8e-74 UniRef50_C6P1C1 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 279 8e-74 UniRef50_Q3A5N0 Sensory box/GGDEF family protein n=1 Tax=Pelobac... 279 9e-74 UniRef50_A1ATC4 Periplasmic sensor diguanylate cyclase/phosphodi... 279 1e-73 UniRef50_Q21UE9 Diguanylate cyclase/phosphodiesterase with PAS/P... 278 1e-73 UniRef50_Q1GXZ6 Diguanylate cyclase/phosphodiesterase (GGDEF & E... 278 2e-73 UniRef50_A1K923 GGDEF/PAS/PAC-domain containing protein n=1 Tax=... 278 2e-73 UniRef50_C6WYT7 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 278 2e-73 UniRef50_C5V0K3 Diguanylate cyclase/phosphodiesterase with PAS/P... 278 2e-73 UniRef50_Q2BQ15 Diguanylate cyclase/phosphodiesterase domain 2 (... 278 2e-73 UniRef50_B3E661 Diguanylate cyclase/phosphodiesterase with PAS/P... 278 2e-73 UniRef50_Q1H236 Response regulator receiver modulated diguanylat... 278 2e-73 UniRef50_B8GQW3 Signal transduction protein containing a membran... 278 2e-73 UniRef50_A6U700 Diguanylate cyclase/phosphodiesterase with PAS/P... 278 2e-73 UniRef50_Q478L4 Diguanylate cyclase/phosphodiesterase with PAS/P... 278 2e-73 UniRef50_A1KA22 GGDEF/EAL/PAS/PAC/GAF-domain containing protein ... 278 2e-73 UniRef50_C6P5X9 Diguanylate cyclase/phosphodiesterase with PAS/P... 278 2e-73 UniRef50_Q2SF23 Predicted signal transduction protein containing... 278 2e-73 UniRef50_Q47A14 Diguanylate cyclase/phosphodiesterase with PAS/P... 278 3e-73 UniRef50_A0L7S5 Response regulator receiver modulated diguanylat... 278 3e-73 UniRef50_Q7NTV0 Putative uncharacterized protein n=1 Tax=Chromob... 277 3e-73 UniRef50_C6XCZ6 Diguanylate cyclase/phosphodiesterase with PAS/P... 277 3e-73 UniRef50_C6P1A0 Diguanylate cyclase/phosphodiesterase with PAS/P... 277 4e-73 UniRef50_C7RS23 Response regulator receiver modulated diguanylat... 277 4e-73 UniRef50_C6P0P9 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 277 4e-73 UniRef50_C6P1Y8 Diguanylate cyclase/phosphodiesterase with PAS/P... 277 4e-73 UniRef50_C7RJ77 Diguanylate cyclase/phosphodiesterase with PAS/P... 277 4e-73 UniRef50_B5E7Y8 Response regulator receiver modulated diguanylat... 277 4e-73 UniRef50_C0QQF1 FOG: EAL domain protein n=1 Tax=Persephonella ma... 277 5e-73 UniRef50_A4U4T7 Two-component sensory box protein n=3 Tax=Magnet... 277 5e-73 UniRef50_A1K5Q6 GGDEF/EAL/PAC/PAS-domain containing protein n=1 ... 276 7e-73 UniRef50_B3PHI4 Sensory box/GGDEF family protein n=1 Tax=Cellvib... 276 7e-73 UniRef50_A0RLD3 Diguanylate cyclase/phosphodiesterase n=79 Tax=c... 276 7e-73 UniRef50_A0LD38 Diguanylate cyclase/phosphodiesterase with PAS/P... 276 9e-73 UniRef50_B7K9S9 Diguanylate cyclase/phosphodiesterase with PAS/P... 276 1e-72 UniRef50_C6MMM5 Response regulator receiver modulated diguanylat... 276 1e-72 UniRef50_Q74A79 Sensory box/GGDEF family protein n=1 Tax=Geobact... 275 1e-72 UniRef50_B7JWK6 Diguanylate cyclase/phosphodiesterase with PAS/P... 275 1e-72 UniRef50_B8DSE5 Diguanylate cyclase/phosphodiesterase with PAS/P... 275 1e-72 UniRef50_B1Y6A9 Diguanylate cyclase/phosphodiesterase with PAS/P... 275 1e-72 UniRef50_C1DBY5 Diguanylate cyclase/phosphodiesterase with PAS/P... 275 1e-72 UniRef50_A2SDI4 Signal transduction protein n=2 Tax=Proteobacter... 275 1e-72 UniRef50_C9Y9D8 Putative uncharacterized protein n=1 Tax=Curviba... 275 1e-72 UniRef50_A4C9D0 Putative Sensory box protein n=2 Tax=Proteobacte... 275 1e-72 UniRef50_C6P797 Diguanylate cyclase/phosphodiesterase with PAS/P... 275 2e-72 UniRef50_C6P6Y2 Diguanylate cyclase/phosphodiesterase with PAS/P... 275 2e-72 UniRef50_A1ALY4 Diguanylate cyclase/phosphodiesterase n=1 Tax=Pe... 275 2e-72 UniRef50_C6CKZ2 Diguanylate cyclase/phosphodiesterase with PAS/P... 275 2e-72 UniRef50_B9M3D1 Diguanylate cyclase/phosphodiesterase with PAS/P... 275 2e-72 UniRef50_B8GMU1 Diguanylate cyclase/phosphodiesterase with PAS/P... 275 2e-72 UniRef50_C5UZT1 Diguanylate cyclase/phosphodiesterase with PAS/P... 274 3e-72 UniRef50_Q0EY23 Sensory box/GGDEF family protein n=1 Tax=Maripro... 274 3e-72 UniRef50_Q47FQ3 Diguanylate cyclase/phosphodiesterase with PAS/P... 274 3e-72 UniRef50_A0LAF7 Diguanylate cyclase/phosphodiesterase with PAS/P... 274 3e-72 UniRef50_C5T1I4 Diguanylate cyclase/phosphodiesterase with PAS/P... 274 3e-72 UniRef50_Q2BL35 Sensory box/GGDEF/GAF/EAL domain protein n=1 Tax... 274 3e-72 UniRef50_B9YY70 Diguanylate cyclase/phosphodiesterase with PAS/P... 274 3e-72 UniRef50_A1AUR6 Diguanylate cyclase/phosphodiesterase n=2 Tax=Pe... 274 4e-72 UniRef50_B8KF61 Ggef/eal/pas/pac-domain containing protein n=1 T... 274 4e-72 UniRef50_Q1N453 Predicted signal transduction protein containing... 274 4e-72 UniRef50_C6P569 Diguanylate cyclase/phosphodiesterase with PAS/P... 274 4e-72 UniRef50_A6QA23 Putative uncharacterized protein n=1 Tax=Sulfuro... 273 5e-72 UniRef50_B0CD40 Diguanylate cyclase/phosphodiesterase with PAS/P... 273 5e-72 UniRef50_Q2LY94 Sensory box ggdef family protein n=1 Tax=Syntrop... 273 5e-72 UniRef50_A1U2V9 Periplasmic sensor diguanylate cyclase/phosphodi... 273 5e-72 UniRef50_A8FY98 Signal transduction protein containing a membran... 273 5e-72 >UniRef50_P76245 Probable diguanylate cyclase yeaP n=68 Tax=Gammaproteobacteria RepID=YEAP_ECOLI Length = 341 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 341/341 (100%), Positives = 341/341 (100%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ Sbjct: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 Query: 61 KMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGS 120 KMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGS Sbjct: 61 KMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGS 120 Query: 121 FYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLT 180 FYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLT Sbjct: 121 FYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLT 180 Query: 181 GLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLN 240 GLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLN Sbjct: 181 GLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLN 240 Query: 241 TLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGI 300 TLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGI Sbjct: 241 TLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGI 300 Query: 301 VEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 VEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS Sbjct: 301 VEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 >UniRef50_C6DD18 Diguanylate cyclase with GAF sensor n=2 Tax=Pectobacterium carotovorum subsp. carotovorum RepID=C6DD18_PECCP Length = 348 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 163/342 (47%), Positives = 221/342 (64%), Gaps = 6/342 (1%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 M+D +++ +S +L E + E LVRQLL MLE+VTD+ESTYLT+VD EA Q+I+FA N++ Sbjct: 1 MTDNLLSHLSNALRSEDTFEGLVRQLLVMLELVTDLESTYLTQVDTEAGFQNILFAHNTK 60 Query: 61 KMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGS 120 + IPE +V W +LCKRA+DE ++ V + WGD A+ LGI T+ STP+ + DG Sbjct: 61 TLNIPEGASVPWHDTLCKRALDEGQSYTPNVTECWGDSETAKALGIITYASTPVRMEDGQ 120 Query: 121 FYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLT 180 YGTLCAASS+ + + + EQ+L LFA LIAQ +QKE LV+QL AN AL SYTDSLT Sbjct: 121 LYGTLCAASSDHKPLTTKGEQILSLFAQLIAQQVQKEWLVQQLTAANVALHEYSYTDSLT 180 Query: 181 GLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLN 240 GL NRR +F +L LFS A++ + + +I FIDLD FK IND+F H +GD+FL +VG+RL Sbjct: 181 GLLNRRGVFYSLEALFSQAKNDHQQALIVFIDLDGFKKINDQFSHEAGDIFLQEVGQRLL 240 Query: 241 TLQQNGEVIGRLGGDEFLV-----VSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPG 295 G+V+GRLGGDEF+ V+ ++S R+ I ++G Y LG V + Y G Sbjct: 241 MWGNPGDVVGRLGGDEFVFARMVNVAPGENERVMASFRDDITPLLQGNYSLGTVSIDYLG 300 Query: 296 ASLGIVEVDPETTDADSALHAADIAMYQEK-KHKQKTPFVAH 336 AS+GI DP + D + AD AMY K K+ Sbjct: 301 ASIGIATADPSVEEPDGVIRRADAAMYANKVTRKKDQTRAFD 342 >UniRef50_D1SQF1 Diguanylate cyclase with GAF sensor n=1 Tax=Acidovorax avenae subsp. avenae ATCC 19860 RepID=D1SQF1_9BURK Length = 351 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 141/332 (42%), Positives = 200/332 (60%), Gaps = 6/332 (1%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 ++ ++S S++ ++LE L R LLEML MVT +ESTYLT +D I+ ARNS + Sbjct: 3 PLLEQLSGSVSTARTLEDLTRPLLEMLSMVTGLESTYLTSIDEAQGTLRILHARNSGTLQ 62 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 IPE SWD + CKRA+DE ++ ++ RW D A R+LG+ + S P+ DG G Sbjct: 63 IPEGLVTSWDQTPCKRALDEGLRYASDISSRWADLAAVRDLGLRAYASMPVRTADGRLCG 122 Query: 124 TLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLP 183 TLCAAS+ R + E +L LFA LI Q I++E L+ +L AN L + TD+LTGL Sbjct: 123 TLCAASTRARPSTPETEHILTLFAHLIGQQIERERLIGELVCANERLARYAATDALTGLQ 182 Query: 184 NRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQ 243 NRRA+ E+LT L S R + ++++AFIDLD FK INDR GH GD FL+ + +RL + Sbjct: 183 NRRALIESLTRLLSQGRRRHVEVLVAFIDLDRFKSINDRHGHEVGDQFLVAIAQRLRAVL 242 Query: 244 QNGEVIGRLGGDEFLVVSLNNENADI-----SSLRERIQQQIRGEYHLGDVDLYYPGASL 298 + +V+ R+GGDEF+V +L + D S RER+ Q +G + L D L Y GAS+ Sbjct: 243 REEDVVARMGGDEFVVAALGTQAGDAVHCPQESFRERVAQATQGRFVLPDATLDYEGASV 302 Query: 299 G-IVEVDPETTDADSALHAADIAMYQEKKHKQ 329 G I + A+ AL AD MY+ K+ ++ Sbjct: 303 GAIAVPPEQPLTAEQALDRADRQMYEVKQARR 334 >UniRef50_D0KWP1 Diguanylate cyclase with GAF sensor n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KWP1_HALNC Length = 352 Score = 341 bits (875), Expect = 2e-92, Method: Composition-based stats. Identities = 132/337 (39%), Positives = 201/337 (59%), Gaps = 3/337 (0%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 D I+ R++ LAK +LVR LLE++E +T ++S YLT++D ++Q IMF RN ++ Sbjct: 10 DPILDRLASVLAKSTDTATLVRPLLELMEHLTGLDSVYLTRIDWSNQVQTIMFTRNCHEL 69 Query: 63 YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY 122 IPE V +++LC+RAI+E FF +VP W D A ++GI T+LS P+ L D + Sbjct: 70 VIPEGLEVPLEHTLCRRAIEEQHFFEPDVPKHWADAHLAIDMGIQTYLSAPVRLADEEIF 129 Query: 123 GTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGL 182 GTLCA ++ + S ++++QLFA LIA I +E L+ L+ N A+ + TD+LTGL Sbjct: 130 GTLCALGADSTEISPSTQRIVQLFANLIAHQIDRERLITHLQADNRAIGELAMTDALTGL 189 Query: 183 PNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTL 242 PNR ++ L + R ++ + +AFIDLD FK INDR GH++GD FL + + L Sbjct: 190 PNRYSLRRALKRELANVRRMDQVLHLAFIDLDQFKEINDRHGHDAGDQFLQAIADALRNG 249 Query: 243 QQNGEVIGRLGGDEFLV--VSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLG 299 + G+ + R GGDEF+ +S N AD ++ R+ G + L + YPGAS+G Sbjct: 250 LREGDFVARYGGDEFVAFGISKNTAIAADEAAFAARLSDLTVGRFALASTIIDYPGASIG 309 Query: 300 IVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAH 336 +V PE D D + AD AMY+ KK+++ T ++ Sbjct: 310 VVTSTPEDHDIDELIERADQAMYRLKKNRRATRRLSD 346 >UniRef50_A9BYA4 Diguanylate cyclase with GAF sensor n=7 Tax=Proteobacteria RepID=A9BYA4_DELAS Length = 343 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 135/329 (41%), Positives = 198/329 (60%), Gaps = 6/329 (1%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 + ++ R+SQS+ + SLE L R LL+MLE T +ESTYLT ++ E Q +++ARN+ +M Sbjct: 2 ESLVQRLSQSVTQAHSLEELTRPLLQMLEESTQLESTYLTTINEEQGQQRVLYARNASEM 61 Query: 63 YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY 122 IPE V W +LCKRA+DE ++ +V D WGD AAR LGI T+ S P+ DG Y Sbjct: 62 QIPEGLVVPWGDTLCKRALDEGRMYTPDVGDCWGDSEAARELGIRTYASAPVRFSDGQLY 121 Query: 123 GTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGL 182 GTLCAAS + S AE +L+LFA LIA+ +++E L+ L N L A + D LTGL Sbjct: 122 GTLCAASKSSQALSSEAEGMLRLFANLIAERVEREQLIASLNRTNRELAALALLDPLTGL 181 Query: 183 PNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTL 242 PNRR + + L L + +++ FIDLD FK +ND GH GD L +GERL+ Sbjct: 182 PNRRCLTDELGRLIARCARSQECVVVGFIDLDRFKNVNDEHGHEVGDALLRAMGERLSAH 241 Query: 243 QQNGEVIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIR--GEYHL---GDVDLYYPGA 296 ++ +++ R GGDEF+ + + ++ ++ +QQ++ + + L Y GA Sbjct: 242 LRSADMLARFGGDEFVFIGVGPLFGSEADAVARELQQRLSDASAFQVDLPDGKTLDYGGA 301 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEK 325 S+G+V + P++ DAD AL AD AMY+ K Sbjct: 302 SVGVVCLRPDSIDADDALQKADAAMYRVK 330 >UniRef50_A9BW89 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=7 Tax=cellular organisms RepID=A9BW89_DELAS Length = 947 Score = 327 bits (840), Expect = 3e-88, Method: Composition-based stats. Identities = 92/348 (26%), Positives = 154/348 (44%), Gaps = 17/348 (4%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 M + + R +++A++Q L ++ + +E + + + +VD ++RL H + A + Sbjct: 332 MHEVLQRRALEAMARDQPLTEVLDLVCREVERIAPDIAVSVLEVDDQSRL-HPLAAPSLP 390 Query: 61 KMYIP--ENFTVSWDYSLCKRAIDEN--CFFSDEVPD-RWGDC-IAARNLGITTFLSTPI 114 Y + + + C A N D D W D LG T STPI Sbjct: 391 ASYSAALDGVPIGPNVGSCGAAAFHNRPVLVGDIATDPLWADFKHLILPLGYTACWSTPI 450 Query: 115 HLPDGSFYGTLCAASSEKRQWSER--AEQVLQLFAGLIAQYIQKEALVEQLREANAALIA 172 G GT + +++++ L A +++E +A + Sbjct: 451 CGLQGGVAGTFAFYYRHFDRPGPDPFHQRLVEACTDLCALALERE-------QARRRIRQ 503 Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 ++ D LT LPNR + S+A H H++ + FIDLD FK +ND GH +GD L Sbjct: 504 LAFYDGLTTLPNRSLLLAQAEQALSVASHEGHELAVVFIDLDRFKQVNDSLGHPAGDRLL 563 Query: 233 IQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLY 292 V +R+ + G++ GRL GDEF++V + A + + ER+Q + + DV L Sbjct: 564 CSVAQRIQAELRTGDIAGRLSGDEFVIVLPHCGGAQAAEVIERLQSALGEPCMIDDVSLA 623 Query: 293 YPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 AS GI + D ++ LH AD+AMYQ K + P ++ Sbjct: 624 -STASCGIAVFPADGRDMETLLHRADMAMYQAKSGGRGLYSFFSPEMN 670 >UniRef50_B3PC21 Sensory box protein n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PC21_CELJU Length = 1306 Score = 322 bits (825), Expect = 2e-86, Method: Composition-based stats. Identities = 92/330 (27%), Positives = 154/330 (46%), Gaps = 20/330 (6%) Query: 19 LESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCK 78 E+++R L E LE+ + S L D A+ + + Q + ENF S + + C Sbjct: 721 FETMLRALAEALEVEHVLIS--LLNPDDPAQASTHTYIKYGQ---LQENFDYSLNGTPCA 775 Query: 79 RAIDEN-CFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSE 137 +DEN CF + ++ D + I ++L I P G G L S + S Sbjct: 776 NVVDENLCFITTGAKIQYPDDHLFQLSNIDSYLGVGIRNPQGQHVGILIVMSEKALNVSP 835 Query: 138 RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFS 197 + +L +FA I+ + + + + ++ D LT LPNRR + + L + + Sbjct: 836 QVRSLLLIFAERISGELNRASD-------QEQIYRLAFFDPLTRLPNRRMLMDRLRLIIA 888 Query: 198 LARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEF 257 + + + + FIDLD+FKL+ND GH+ GD L+QV ER++++ + ++ RLGGDEF Sbjct: 889 QSARTSQQGALLFIDLDHFKLLNDTRGHHIGDQLLVQVAERISSIIRTTDLAARLGGDEF 948 Query: 258 LVV------SLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDAD 311 +VV + + E++ + I Y L +Y+ S+G+ + T D Sbjct: 949 VVVFDNLGTDPDKAALEAKHRAEQLHELINLPYPLQ-QSVYHCTISIGVNLFNANNTSID 1007 Query: 312 SALHAADIAMYQEKKHKQKTPFVAHPALHS 341 L AD+AMYQ K + T P + S Sbjct: 1008 DLLRHADVAMYQAKDGGRNTIRFFDPHMQS 1037 >UniRef50_C4LEB0 Diguanylate cyclase with PAS/PAC and GAF sensors n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LEB0_TOLAT Length = 543 Score = 320 bits (820), Expect = 5e-86, Method: Composition-based stats. Identities = 76/341 (22%), Positives = 137/341 (40%), Gaps = 8/341 (2%) Query: 2 SDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQK 61 +Q RV + L+K L+ ++ +++ +E + +D E + + Sbjct: 204 HEQAHNRVLELLSKGAPLDKILLAIVKSVETEYPEMMCSILLLDKEGKHLLTGATPSLPD 263 Query: 62 MYIP--ENFTVSWDYSLCKRAIDEN--CFFSDEVP-DRWGDCIAARNL-GITTFLSTPIH 115 Y + C A D W L G+ S PI+ Sbjct: 264 FYNEAINGIEIGIGAGSCGTAAFTGKRVIVEDIATHPYWAAYRELTTLAGLGACWSEPIY 323 Query: 116 LPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSY 175 GT ++ ++++ A L A I++ VE LR++ ++ Sbjct: 324 GSADKVLGTFAIYHHDRHSPKPEDIKLIEASANLAAIAIERYHAVEALRQSEEKHRRLAH 383 Query: 176 TDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQV 235 D LTGLP R + L A+ + + F+DLD FK +ND FGH GD L +V Sbjct: 384 YDVLTGLPTRVLFSDRLKQAMRSAKRNKKNLALMFLDLDKFKPVNDTFGHAVGDRLLKEV 443 Query: 236 GERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYP 294 R+ + + + R+GGDEF+++ + +A+ ++ E+I+Q + + L + Sbjct: 444 ASRMLGCVRESDTVCRIGGDEFVILLHDVADAESAFNVAEKIRQALNQPFKLAGHQMNI- 502 Query: 295 GASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVA 335 S+GI D + AD+AMY+ K++ + V Sbjct: 503 SCSIGIALYPENGVDERTLTKNADMAMYRAKENGRDQAQVF 543 >UniRef50_B3EBJ4 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Geobacter lovleyi SZ RepID=B3EBJ4_GEOLS Length = 693 Score = 316 bits (810), Expect = 9e-85, Method: Composition-based stats. Identities = 88/327 (26%), Positives = 146/327 (44%), Gaps = 24/327 (7%) Query: 13 LAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSW 72 +++ + E +R E M+ + +S + +VD+E RLQ FA S M Sbjct: 110 ISRHKRAEQALRLSEERYRMLVEHQSDLVVRVDIEGRLQ---FASPSFCMLF-------- 158 Query: 73 DYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEK 132 IDE E+ I + + + S Y +C+ + + Sbjct: 159 -------GIDEEQLVGREL----CPIINSSGQAVMKEAMQRLDCHPKSCYHEICSQTLDG 207 Query: 133 RQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENL 192 +W A + + G I + + ++A ++ ++ D+LTGLPNR + + L Sbjct: 208 LRWIGWAMKGVVDEKGHIEAIVGIGRDITDRKKAEQEILQLAHYDTLTGLPNRSLLQDRL 267 Query: 193 TTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRL 252 + SLA N + + F+DLD FK +ND FGH GDL L +V RL + + + R+ Sbjct: 268 SQALSLANRGNVTLAVLFLDLDRFKHVNDAFGHQIGDLLLQEVSRRLKDCVRATDTVSRI 327 Query: 253 GGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDAD 311 GGDEF+++ N + + S+ +I + + LG +LY G S+GI + D D Sbjct: 328 GGDEFVIILTNLIKCSQAGSIAAKIISSMSRLFQLGGHELY-SGTSIGIALYPTDGNDVD 386 Query: 312 SALHAADIAMYQEKKHKQKTPFVAHPA 338 + L AD+AMYQ K + T P Sbjct: 387 TLLKHADMAMYQAKASGRGTFKFFSPE 413 >UniRef50_B1KCF3 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Burkholderia cenocepacia MC0-3 RepID=B1KCF3_BURCC Length = 935 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 150/348 (43%), Gaps = 21/348 (6%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHI------- 53 + +++ +V ++A+E+ L ++ + E + + + ++D + +L + Sbjct: 335 IHEELQRKVLGAMAREEPLANVTTLVCHEAERIAPAVTASIRRIDDDGKLWTLAAPSLPM 394 Query: 54 MFARNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRW--GDCIAARNLGITTFLS 111 +AR + I +F + + F PD A + G T+ Sbjct: 395 EYARAIDGLRIAPDFV----ERIAAGPFGRHIAFPTTSPDEAYASHSALAISFGFTSCWW 450 Query: 112 TPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 PI DG GTL E Q S ++++ L A +++E + + Sbjct: 451 HPIRSTDGRTLGTLSFYYRESHQPSALHQELVDASLNLCALALEREG-------SKERIR 503 Query: 172 AQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLF 231 ++ D LTGLPNR+ + ++ + A H + F+DL++FK +ND GH +GD Sbjct: 504 RLAFYDGLTGLPNRQLLMSQAESVLAAAVASQHSFAVMFVDLNSFKQVNDTLGHAAGDGL 563 Query: 232 LIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDL 291 L +V +RL ++ +++GRL GDEF++V + ER ++R + D +L Sbjct: 564 LSEVAQRLKIDLRDTDIVGRLSGDEFVIVLSPADIELTLDFAERTMNRLRQPVQISDTNL 623 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 P AS+GI + + AD+AMY+ K V P L Sbjct: 624 R-PAASMGIAIFPQHGESIGALMQHADMAMYEAKFAGHHEYRVFEPEL 670 >UniRef50_A4J477 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=2 Tax=Firmicutes RepID=A4J477_DESRM Length = 947 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 76/346 (21%), Positives = 147/346 (42%), Gaps = 13/346 (3%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 + + +L +L+ L++ ++ ++ + ++ +D ++ + Sbjct: 341 LHETTLALMNRLNLDELLKAIVTRSAELSGTDHGFIFLID-NNNPSELVLRFGTGTYKQM 399 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRW-GDCIAARNLGITTFLSTPIHLPDGSFYGT 124 + + + W G ++ I ++ P+ +G G Sbjct: 400 VGIRLKPGEGMVGTVWQTGEPLIVKDYSSWPGKSSIFSHIKIHGGIALPLK-SEGKINGI 458 Query: 125 LCAASSEKRQ-WSERAEQVLQLFAGLIAQYIQKEALVE-------QLREANAALIAQSYT 176 L EK Q +L FA L + + L + + + L +Y Sbjct: 459 LGIIYIEKNQNLESNNLSLLTGFAQLASIALDNANLYQAAQQELAERKRIEEILRYLAYH 518 Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 DSLT LPNR + L+ + A +K+ + F+DLD+FK +ND GH+ GD L + Sbjct: 519 DSLTELPNRTLFNDRLSMALNQAHRNKNKLAVMFLDLDHFKKVNDTLGHDIGDQLLKGIA 578 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYPG 295 +R + L + G+ I R+GGDEF ++ N A+ S + ++I + + +G+ + ++ Sbjct: 579 QRFSKLLRKGDTIARIGGDEFTILLHNITRAENASIVADKIIDTLANPWIIGNHE-FHIT 637 Query: 296 ASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 S+GI + TDA+S L AD AMYQ K+ + P +++ Sbjct: 638 TSIGIALYPDDGTDAESLLKNADAAMYQAKEMGRNNYQFYTPTMNA 683 >UniRef50_Q31GH8 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=3 Tax=cellular organisms RepID=Q31GH8_THICR Length = 1466 Score = 307 bits (786), Expect = 5e-82, Method: Composition-based stats. Identities = 67/228 (29%), Positives = 110/228 (48%), Gaps = 10/228 (4%) Query: 119 GSFYGTLCAASSEKRQWSERAEQVLQLFAGL-----IAQYIQKEALVEQLREANAALIAQ 173 G + G + +R+ E + L + GL + +Y+ + +++E+ + Sbjct: 983 GHWQGEIW----NRRKNGEIFPEWLSISRGLDTSGNVTEYVGIFNDISKVKESEEKIKHL 1038 Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 ++ D LTGL NR + + L S A N + + FIDLD+FK +ND GH GD LI Sbjct: 1039 AHYDPLTGLVNRELLMDRLNHSISTADRNNTPLALLFIDLDHFKNVNDTLGHQVGDQLLI 1098 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYY 293 +VG+R+ + ++ + I R GGDEF+VV + + E+I + I + +L L+ Sbjct: 1099 EVGQRILKILRDEDTIARQGGDEFIVVLPDTGENGAVHVAEKILESISDQLNLKPYKLFI 1158 Query: 294 PGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 S+GI + DADS L AD AMYQ K + + + Sbjct: 1159 -TPSIGIAVYPQDGKDADSLLKNADTAMYQAKNDGRNVYRFFTMEMQA 1205 >UniRef50_Q1JXC9 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JXC9_DESAC Length = 888 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 82/319 (25%), Positives = 149/319 (46%), Gaps = 6/319 (1%) Query: 24 RQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDE 83 R++ + L D + + ++ E ++ + ++ M +++ + + C++ +DE Sbjct: 312 RRVAQQLCQWFDADCAIVGRIQEEGKVLSLATIQDGVSM---PSYSFNLSDTPCEKVVDE 368 Query: 84 N-CFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQV 142 C S+ V + + +C + ++ TPI +G G L S K + ERA+ V Sbjct: 369 GMCLMSEGVMEHYPNCSLVTQMHAEGYVGTPIRDHNGEVLGVLSVLSRGKIKSLERAKDV 428 Query: 143 LQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHL 202 L + A ++ I++E ++LR+ L Y D LT LPNR+ + L S+A Sbjct: 429 LAIMAARVSAEIEREISEQRLRDNEDHLEYLVYHDVLTDLPNRQLFRDRLQHAISMASLG 488 Query: 203 NHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSL 262 H++ + FIDLD+FK IND GH GD L +V RL + + RL GDEF ++ Sbjct: 489 QHQVGVLFIDLDHFKKINDSLGHEVGDRLLCEVARRLRLCIGGLDTVARLSGDEFAIILD 548 Query: 263 NNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAM 321 N ++ + + + +++ + L+ AS+GI + D S L AD AM Sbjct: 549 QLNNIENVILIAQEVNRRLAEMMVVEGYKLF-LTASIGISLYPGDGKDVVSLLKCADAAM 607 Query: 322 YQEKKHKQKTPFVAHPALH 340 ++ K+ + L+ Sbjct: 608 FKAKELGRDNYRFYTAGLN 626 Score = 60.9 bits (147), Expect = 7e-08, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 7/166 (4%) Query: 20 ESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKR 79 E R L L ++ + ++ + + R + A + I +N + + C Sbjct: 26 EPFFRALTTKLARLSGADYAFIGEYTDDQRDRVRTVAVYADGNNI-DNLEFELENTPCAV 84 Query: 80 AIDEN-CFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSER 138 + E + V + A L + +++ P+ G G L S E Sbjct: 85 VVREGLQRYPHNVLKLFPLDHLAIELKVESYIGLPLVDSKGEVMGPLAVFSRRPLGDIEM 144 Query: 139 AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 AE L LFA A +++ + + + QS D+ +PN Sbjct: 145 AETALHLFAMRAAAELERIKI--ERQRDEELHFLQSLLDA---IPN 185 >UniRef50_Q39X25 Diguanylate cyclase/phosphodiesterase n=2 Tax=Geobacter RepID=Q39X25_GEOMG Length = 633 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 82/335 (24%), Positives = 145/335 (43%), Gaps = 21/335 (6%) Query: 25 QLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKR--AID 82 L + + E+ LT ++ +A L A + + + ++C A Sbjct: 33 ALCDGACDIVRAETGVLTAINRQAGLLTFTAASGAWNQMMKGVTVPLRNGNICAALAACG 92 Query: 83 ENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQV 142 C + + + T L PI +G + A +K + + EQ+ Sbjct: 93 TPLRVDRLSLFCRESCELFQVVEMNTALLVPIFD-EGRVAACIAAFRMDK-PFDQVDEQL 150 Query: 143 LQLFAGLIAQYIQKEALVEQLRE--------------ANAALIAQSYTDSLTGLPNRRAI 188 LQ +A + ++ L+E LR A + +Y DSLTGLPNRR Sbjct: 151 LQQYAHSASAVLRNFRLMEDLRRHAAMLEEEVAERSRAEERIRQMAYYDSLTGLPNRRLF 210 Query: 189 FENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQ-QNGE 247 + L +LA+ + + F+DLD FKLIND GH GD L+ V +RL + G+ Sbjct: 211 NDRLRQSLALAQRHKRPLAVMFLDLDRFKLINDTLGHAVGDRLLMAVAKRLRNCCRREGD 270 Query: 248 VIGRLGGDEFLV-VSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 + R GGDEF++ +S ++ D ++ ++I R + + +L+ S+GI + Sbjct: 271 TVARQGGDEFIINLSAISDVKDAFTVAQKIIDVFRTPFVIDGYELFITT-SIGISVYPHD 329 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 D+ + AD+AMY+ K+ + + P +++ Sbjct: 330 GRSGDALVKNADVAMYRAKEQGRNNCQLFAPEMNA 364 >UniRef50_A7BSH2 Diguanylate cyclase/phosphodiesterase n=1 Tax=Beggiatoa sp. PS RepID=A7BSH2_9GAMM Length = 604 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 72/310 (23%), Positives = 128/310 (41%), Gaps = 39/310 (12%) Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIH-------- 115 + F S + KR +EN + V + + I + + P Sbjct: 293 PAQGFIWSLEDVTEKRQAEENLRLAATVFETTTEAILVTDANNHIIIVNPAFTTITGYTF 352 Query: 116 --------------LPDGSFYGTLCAASSEKRQWSER---------------AEQVLQLF 146 D FY + + ++ +W + ++ Sbjct: 353 DEVVGKQPKILSSGHHDAEFYQQMWTSLLQEGKWQGEIWNRRKNGEIYVEWISITTIRDA 412 Query: 147 AGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKI 206 I QY+ + + ++ ++ Q++ D+LT LPNR + L A+ ++ Sbjct: 413 NHQIVQYVAVFTDITKRKQNEELILHQAHHDALTNLPNRILFVDRLKQALLTAKRHQGRV 472 Query: 207 MIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN 266 + FIDLD FK +ND GH+ GDL L +V +RL + + + RLGGDEF VV +N Sbjct: 473 AVMFIDLDRFKSVNDTLGHDFGDLLLKEVAQRLIACIRESDTVARLGGDEFTVVLTQIQN 532 Query: 267 -ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 +DI + +R+ + + + D + + G S+GI + +A++ + ADIAMYQ K Sbjct: 533 ISDIRIIAQRMLKSLSQPFIQKDNEAFIGG-SIGIAFFPKDGQEAETLVKKADIAMYQAK 591 Query: 326 KHKQKTPFVA 335 + + T Sbjct: 592 QEGRNTSRFY 601 >UniRef50_C8SP12 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SP12_9RHIZ Length = 894 Score = 303 bits (776), Expect = 8e-81, Method: Composition-based stats. Identities = 89/350 (25%), Positives = 150/350 (42%), Gaps = 18/350 (5%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 M A + + +A L+ ++ +L+ ++E + +D E R A + Sbjct: 294 MLRTGQAEILEMIATGAPLDDVLDRLMRLMESQLTGILGSVLLLDKEGRHLRHGAAPSLA 353 Query: 61 KMYIP--ENFTVSWDYSLCKRAI--DENCFFSDEVPD-RWGDCI-AARNLGITTFLSTPI 114 + YI + + C A+ E +D + D W D A G + STPI Sbjct: 354 EGYINAIDGVAIGPKVGSCGTAVFRREPVVVADIMRDPLWDDYRDLAERYGYRSCWSTPI 413 Query: 115 HLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 G+ G S R+ +E +++ + I + ++A + + Sbjct: 414 VSHQGAVLGVFAMYSMTVREPAEAETRLINFTTRIAGIAI-------ERKKAEDQIHFMA 466 Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 D LTGLPNR + + L+ A+ + + + FIDLDNFKLIND GHN+GD L Sbjct: 467 NHDVLTGLPNRALLQDRLSQAILHAQRYDRWVSVVFIDLDNFKLINDTLGHNAGDRLLKT 526 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRE---RIQQQIRGEYHLGDVDL 291 V ER+ + + I RLGGDEF++V + + ++ + E +++ I LGD Sbjct: 527 VAERMVGCISSTDTIVRLGGDEFVLVLSD-QPKNVDLIAETLQKLRTAIAEPLQLGDH-C 584 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 AS+GI + +S + AD AMY+ K + P ++ Sbjct: 585 VRATASIGIATYPKDGKAPESLVANADAAMYRAKAVGRDNFQFYAPEFNT 634 >UniRef50_B1XYS1 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XYS1_LEPCP Length = 784 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 83/341 (24%), Positives = 144/341 (42%), Gaps = 13/341 (3%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIM-FARNSQKMY 63 + V +L +++ L ++ + ++++ + VD + ++ + + ++ Sbjct: 164 LQGPVLGALVRDRPLAEVMALVCTQVQILAPDVVATVLGVDDDGLIRPLAGPSIPAEVSC 223 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSD---EVPDRWGDCIAARN-LGITTFLSTPIHLPDG 119 + + C A + W D LG+ S+PI +G Sbjct: 224 QFDGAPIGPKAGSCGTAAWRGSPVVVTDIDTDPLWDDYRHVVQPLGLRACWSSPIKNGEG 283 Query: 120 SFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSL 179 T E R EQ++++ L +++E ++A + +Y D L Sbjct: 284 RVLATFAFYFREPRAPHGLHEQLVEMSVHLCTLALERE-------RSHAHIHQLAYYDGL 336 Query: 180 TGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERL 239 TGLPNR + NL + A+ + + FIDLD FK +ND GH GD L +V +RL Sbjct: 337 TGLPNRALLQANLARAITQAQQDGTTLALLFIDLDRFKDVNDSHGHAVGDELLREVAQRL 396 Query: 240 NTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLG 299 ++ ++ RL GDEF+VV + ER+QQ + +GD+DL GA LG Sbjct: 397 AGEVRDRSLVCRLAGDEFVVVLPHCGVEQARHTAERVQQALARPITVGDLDL-TTGACLG 455 Query: 300 IVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + + +D D L AD AMYQ KK + ++ Sbjct: 456 VAMYPDDGSDLDRLLRHADAAMYQAKKDGRGGLHFYRAEMN 496 >UniRef50_Q1JZB1 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZB1_DESAC Length = 1092 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 76/324 (23%), Positives = 142/324 (43%), Gaps = 10/324 (3%) Query: 19 LESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCK 78 E ++R+L + +M+ + + ++ + + + ++ S C+ Sbjct: 504 FEKILRELC----LYFEMDGALIGIPNDGDHVECLSM---LFLGHYRDGYSYPLVGSPCE 556 Query: 79 RAI-DENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSE 137 + + +E CF+ V + + + + +GI ++ P+ + G L S ++ Sbjct: 557 KVLRNEVCFYPSGVRELFPQDVDFKQMGIESYFGIPLVNSEQKVVGVLNGFSRQRMHLPP 616 Query: 138 RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFS 197 A ++L + A A +++ E L E L ++ D LT LPNR E L Sbjct: 617 DAREILSIVAARAATELERLKADEALAEHRKQLSYLAFHDPLTQLPNRLRFTEVLEAAVG 676 Query: 198 LARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEF 257 A + + FIDLD FK IND GH+ GD L V R +L + +V+ RLGGDEF Sbjct: 677 DAEGHGRYLSLLFIDLDRFKNINDSLGHSIGDKLLQAVARRTGSLIDSADVLARLGGDEF 736 Query: 258 LVVSLNNENADI-SSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHA 316 ++ N + + +R+ + + + D L+ AS+GI + + D + Sbjct: 737 AILLFNCVTPVVGADTAQRVIDALSQPFQIDDYSLHV-SASIGITVAPVDAREPDELIKC 795 Query: 317 ADIAMYQEKKHKQKTPFVAHPALH 340 ADIAM++ K + T +++ Sbjct: 796 ADIAMFKAKDAGRNTYKFYERSMN 819 >UniRef50_C4ZL18 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase n=1 Tax=Thauera sp. MZ1T RepID=C4ZL18_THASP Length = 737 Score = 300 bits (770), Expect = 4e-80, Method: Composition-based stats. Identities = 81/285 (28%), Positives = 131/285 (45%), Gaps = 13/285 (4%) Query: 69 TVSWDYSLCKRAIDENCFFSDE---VPDRWGDCIAAR-NLGITTFLSTPIHLPDGSFYGT 124 T S S C A+ + F E + R+ D R + GI + P+ +P G GT Sbjct: 185 TTSRSVSFCAHALLGDGLFEVEDATLDPRFADNPLVRGDPGIRFYAGMPLVMPGGEVVGT 244 Query: 125 LCAASSEKRQWSERAEQVLQLFAGLIAQYIQK-------EALVEQLREANAALIAQSYTD 177 LC S R+ A + L + A + ++ E V + EA A ++ + D Sbjct: 245 LCVIDSRPRRLGATAREALAVLARSVTDELELRQRVGELEEEVARRHEAEARIMQLATRD 304 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 +LTGLPNR A+ + L A+ + + + F+DLD FK IND GH+ GD L ++ Sbjct: 305 ALTGLPNRAALMDRLHQGVRAAQRSGNLLAVLFLDLDRFKWINDTLGHDLGDALLQEMAL 364 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGA 296 RL+ + + + RLGGDEF +V + + AD ++ +I I + L G Sbjct: 365 RLSRAVRECDTVARLGGDEFAIVLGDLWQVADAEAVAAKIVDVITRPLEVRGHALRVGG- 423 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 S+G+ + D +S L AD+AMY K+ + +++ Sbjct: 424 SVGVAVYPFQAHDEESLLRHADLAMYHAKESGGNRHQLFSEQMNA 468 >UniRef50_C6WYR4 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WYR4_METML Length = 681 Score = 300 bits (769), Expect = 5e-80, Method: Composition-based stats. Identities = 97/338 (28%), Positives = 144/338 (42%), Gaps = 37/338 (10%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 I R L QS E+ VR L E + L +D+E R A++ Q Sbjct: 118 AIERKRAELELRQS-EAKVRALYEAV-------PDLLLFLDLEGRFLECKPAKDFQTHIE 169 Query: 65 PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGT 124 PE+F + I E E GIT+F + LP G Sbjct: 170 PEHFLGKTIHEALPEGIAEQAMLCLE--------KVVVGSGITSFEYQ-MALPQG----- 215 Query: 125 LCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 ++ E R EQVL + + + + L ++ D+LTGLPN Sbjct: 216 --VSNYESRFIRASEEQVLCIV-----------RDISESKRTQQQLHFLAHYDTLTGLPN 262 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R E+L + A + I + FIDLD FK IND GH GD L QVG R++ + Sbjct: 263 RLLFNESLHQAQTHANRTSDTIAVMFIDLDRFKNINDTLGHGIGDKLLQQVGNRISLCIR 322 Query: 245 NGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 + + R+GGDEF VV +N E +D + + E+I +R + +G+ +++ GAS+GI Sbjct: 323 ESDTVARMGGDEFAVVLVNVREESDAAVVAEKIIDALRLPFMVGEHEVFV-GASIGITFY 381 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 P D D L AD+AMY K+ + + + Sbjct: 382 RPGQDDRDVLLEKADVAMYHAKERGRNNFQFYSSEMDA 419 >UniRef50_C7RK65 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RK65_9PROT Length = 1327 Score = 300 bits (769), Expect = 5e-80, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 112/224 (50%), Gaps = 3/224 (1%) Query: 118 DGSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYT 176 G + G L + + + E ++ G +A Y+ + + +LR A+ L Q++ Sbjct: 845 QGRWRGELWNRRKDGQTFLESLTISAVKDAQGKVAHYVGVFSDITELRRAHDQLDHQAHH 904 Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 D LTGLPNR + + L A + + FIDLD FK IND GH GD L +V Sbjct: 905 DPLTGLPNRLLLGDRLHKALQRAHRDETGLAVFFIDLDRFKNINDTLGHQVGDRVLCEVA 964 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPG 295 RL L + + +GRLGGDEFL+V + E +S + E+I ++ + + ++ G Sbjct: 965 WRLGRLMRESDTVGRLGGDEFLIVIEDVGEPTAVSHIAEKILNVLQASPVTVEHE-FFVG 1023 Query: 296 ASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 AS+GI + DA++ + AD+AMY+ K+ + T L Sbjct: 1024 ASIGISVFPQDGADAETLMKNADVAMYRAKERGRNTYEFFTKDL 1067 >UniRef50_B3EBJ5 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Proteobacteria RepID=B3EBJ5_GEOLS Length = 965 Score = 300 bits (768), Expect = 6e-80, Method: Composition-based stats. Identities = 80/329 (24%), Positives = 150/329 (45%), Gaps = 24/329 (7%) Query: 13 LAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSW 72 +++ + +E+ +++ E M+ + ++ + K D+ L + + + K++ Sbjct: 388 ISRRKQVENSLKESEERYRMLVENQADLVIKTDMTGNL--LFVSPSFCKLFGQ------T 439 Query: 73 DYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEK 132 + L +A+ +++ A G+ + D S+Y + + E Sbjct: 440 EEKLLGKALLPVIMLPEQL---------ATAAGMEQMIC-----SDTSYYREYLSPTREG 485 Query: 133 RQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENL 192 ++W A + + +G I + + A + + +Y D +TGLPNR + + L Sbjct: 486 KRWIGWALRCIFNQSGQAEAIIGMGRDITDRKTAESTIEQLAYHDPVTGLPNRTLLHDRL 545 Query: 193 TTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRL 252 + A + + I F+DLD FK IND GH GD L VG RL ++ + + RL Sbjct: 546 QLAINRAERDSQGVAILFLDLDRFKAINDSLGHAMGDQLLRLVGNRLLDCVRSSDTVARL 605 Query: 253 GGDEFLVVSLNNENADIS-SLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDAD 311 GGDEF+V+ +N S+ +I +Q+ Y + D ++Y +S+GI + DA+ Sbjct: 606 GGDEFVVLISALDNDHAVGSVVMKILEQLCEPYQIDDHEVY-TSSSIGISLFPRDGRDAE 664 Query: 312 SALHAADIAMYQEKKHKQKTPFVAHPALH 340 L AD+AMYQ K+ + T P L+ Sbjct: 665 ELLKNADMAMYQAKEAGRNTCHFFSPELN 693 Score = 64.0 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 68/187 (36%), Gaps = 18/187 (9%) Query: 2 SDQIIARVSQSLAKEQSLESLVRQLLEMLEMVT----------------DMESTYLTKVD 45 +D ++ L+K +E +RQL+E + T D + ++ + Sbjct: 100 NDNLLLVTINDLSKLHLVEDGLRQLVEGISEATGEKFFQFLALHLAKGLDADFAFIGEFA 159 Query: 46 VEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDENC-FFSDEVPDRWGDCIAARNL 104 R A + I NF + C++ + + +P+ + A + Sbjct: 160 DSERTIIQTVAVAADGA-IHANFRFPLAETPCEQVLTNGLRIYPKAIPELFPLDHLALEM 218 Query: 105 GITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLR 164 G+ +++ P+ G + S + + A +LQ+FA A +++ L+ Sbjct: 219 GVESYIGIPLVSSRRITLGPMAVFSRRPIRETHLAASMLQVFAVRAASELERRQAERVLK 278 Query: 165 EANAALI 171 E A L Sbjct: 279 ETEARLK 285 >UniRef50_A4C531 Sensory box protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C531_9GAMM Length = 725 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 89/331 (26%), Positives = 146/331 (44%), Gaps = 23/331 (6%) Query: 24 RQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDE 83 +QL+ + V D+ L++ ++ Q A S I WD+ + + Sbjct: 137 QQLIAFIGCVEDVTELCLSQQQLKDNQQRYELALKSSGAGI-------WDWDILNDVVHY 189 Query: 84 NCFFSDEVP----------DRWGDCIAARNLGI-TTFLSTPIHLPDGSFYGTLCAASSEK 132 + FSD + W D I +L I T L + D + C S+K Sbjct: 190 SAKFSDLLGFDNLLFGTSWSSWTDQIHPDDLDIFETQLQNHLDDAD-KPFNIECRLISQK 248 Query: 133 RQ--WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFE 190 ++ W + L+ G + + + ++ + Q+ D LTGLPNR E Sbjct: 249 KKVLWFTVVGEALRDEHGYPTRMVGSMVDITLKHQSQQMIWQQANFDHLTGLPNRNMFTE 308 Query: 191 NLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIG 250 L S ++ K + FIDLD+FK +ND GH +GD LI+V ERL + + + IG Sbjct: 309 RLKQEISESKRYQQKFALFFIDLDHFKEVNDTLGHGAGDQLLIEVAERLQLILRESDTIG 368 Query: 251 RLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTD 309 R+GGDEF + + N+ DI SL +++ Q I +++ ++ AS+GI + Sbjct: 369 RIGGDEFTALIPHINQTCDIDSLAQKLIQTIELPFYIDGESIFI-SASIGITLFPDHSEK 427 Query: 310 ADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 D L AD AMY+ K++ +K A+ Sbjct: 428 IDELLKFADQAMYRSKENGRKRFSYFTFAMQ 458 >UniRef50_C5JAR6 Conserved uncharacterized protein n=1 Tax=uncultured bacterium RepID=C5JAR6_9BACT Length = 922 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 102/208 (49%), Gaps = 2/208 (0%) Query: 135 WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTT 194 W ++ +G+I YI + + +E L+ Q+ D+LTGLPNR + L Sbjct: 452 WQHAIISPIRDNSGVITHYISVKEDISIRKEYEERLVRQANYDALTGLPNRILAMDRLKQ 511 Query: 195 LFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGG 254 + A+ N K+ + +DLD+FK +ND GH +GDL L + RL + G+ + RLGG Sbjct: 512 AIAQAQRYNRKVALMLLDLDDFKKVNDTLGHAAGDLLLKEAALRLVDCLREGDTVARLGG 571 Query: 255 DEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSA 313 DEF+++ + + + + E+I + +G + Y G S+GI + D Sbjct: 572 DEFVLLLPDLTDTSSAEVVAEKILAACNQPFDVGGHEAYIAG-SIGIAIFPDDERDPILL 630 Query: 314 LHAADIAMYQEKKHKQKTPFVAHPALHS 341 + AD AMY+ K+ + P +++ Sbjct: 631 MRNADAAMYRSKREGKGVFRYFTPEMNA 658 >UniRef50_C6X6V4 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6X6V4_METSD Length = 1126 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 61/230 (26%), Positives = 107/230 (46%), Gaps = 11/230 (4%) Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIA 172 +G + G + +R+ E + L + G + Y+ + Q + + L Sbjct: 631 EGQWVGEIW----NRRKSGESYPEWLSISQVADAKGSVQNYVAVFTDITQRKLSEERLQF 686 Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 + D+LT LPNR + E + A+ I + FIDLD FK+IND GH +GD+ L Sbjct: 687 LANHDALTHLPNRALLQERIDQALFRAQRNKTAIAVLFIDLDRFKIINDTLGHQTGDMLL 746 Query: 233 IQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDL 291 + +RL + + + R GGDEF+V+ + + D ++++ +I + + L +L Sbjct: 747 QEAAKRLKECLRETDTVARQGGDEFVVLVEDCGDTDYLNTIARKIMATLAQPFILVGREL 806 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + AS+GI + D S L AD AMY+ K+ + T ++ Sbjct: 807 FI-SASIGISVYPDDGLDTASLLKHADAAMYRAKESGKNTFRFYAAEANT 855 >UniRef50_C6NZE4 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6NZE4_9PROT Length = 727 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 83/351 (23%), Positives = 148/351 (42%), Gaps = 33/351 (9%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLE---MLEMVTDMESTYLTKVDVEARLQHIMFAR 57 M ++A +++++ ++ + R L++ +LE V + + + D + + + A Sbjct: 142 MLQPVLAHLAKAIVLCRNNDVHTRGLIDQRDLLETVFESSYSGVMITDAKGNIVEVNPAF 201 Query: 58 NSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLP 117 Y E + L D + + W D +A Sbjct: 202 TRITGYQSEEVQGRNPHLLASGRHDHTFY-----REMWDDILA----------------- 239 Query: 118 DGSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYT 176 +G + G + + ++ +G + Y+ + V + +EA A + ++ Sbjct: 240 NGHWEGEIWDRRKNGEVYPSWMNINPVRDISGNLLYYVGIFSDVTKRKEAEAQIHQLAFY 299 Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 D LT LPNRR + E L FS+ H + F+DLDNFK +ND GH+ GD LI+V Sbjct: 300 DPLTELPNRRLLNERLQQAFSVGARSGHHGAVLFLDLDNFKTLNDTKGHDIGDQLLIEVA 359 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVS------LNNENADISSLRERIQQQIRGEYHLGDVD 290 +RLN+ +NG+ + RLGGDEF+VV + + E+I+ + Y L + Sbjct: 360 KRLNSCVRNGDTVARLGGDEFVVVLESLSSVPDEAATQADLVAEKIRYALSQPYQLANH- 418 Query: 291 LYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 ++ S+G+V + L AD AMYQ K + P + + Sbjct: 419 VHRTTPSIGVVMFRGHQQSLEEVLKFADTAMYQAKTAGRNAIRFYDPVMQA 469 >UniRef50_Q47AF7 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Dechloromonas aromatica RCB RepID=Q47AF7_DECAR Length = 1094 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 83/341 (24%), Positives = 129/341 (37%), Gaps = 15/341 (4%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP-- 65 + + L + L ++ + +LE + + +D HI A + + Y Sbjct: 493 HILERLGQGAELSEVLELVTALLEQESPGYLCSIMLLDEAGERLHIAAAASLPEKYCRAI 552 Query: 66 ENFTVSWDYSLCKRAI---DENCFFSDEVPDRWGDCIAA-RNLGITTFLSTPIHLPDGSF 121 E + C A E + W G+ S PI G Sbjct: 553 EGVRIGDGIGSCGTAAWSGKEVFVENIATHPYWASYRDLPLKCGLRACWSFPIADSGGKV 612 Query: 122 YGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTG 181 G E SE + ++ L I++ + A L Q+ D+LTG Sbjct: 613 LGVFGIYRREPGLPSEAELESIRQAHHLAMVAIERNRI-------EAKLKYQASFDALTG 665 Query: 182 LPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNT 241 LPNR + L A H + FIDLD FK +ND GH SGD L++ ER+ Sbjct: 666 LPNRSLFYIRLRDEMLRAARTGHGGALLFIDLDRFKEVNDSLGHESGDSLLVEAAERIRA 725 Query: 242 LQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGI 300 + +++ RLGGDEF+VV + + L + I + + L Y AS+GI Sbjct: 726 QVRASDLVARLGGDEFVVVLPDVRAPEHLGLLAQAIVDALVVPFVLDGHQAYV-SASVGI 784 Query: 301 VEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + DAD L AD AMY K+ + ++ + Sbjct: 785 ACYPQDAEDADILLSCADKAMYVAKELGRNGFCFFTESMQT 825 >UniRef50_B8HP13 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Cyanobacteria RepID=B8HP13_CYAP4 Length = 1094 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 77/334 (23%), Positives = 139/334 (41%), Gaps = 21/334 (6%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 V +++ K + E+ +RQ E + + + + + + + + + Sbjct: 505 VIRNITKRKRAENELRQAEEKYRSIFENATEGIFQSSPSG-----SYISANPALARIYGY 559 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + I + + + ++ I +T F S ++ DGS Sbjct: 560 DSPQELQHHLTDIGRQLYVNPDRRQQFVHSIL-EQGQVTDFESQ-VYRKDGSVI------ 611 Query: 129 SSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAI 188 W + ++ G I + + ++A + Q++ D LTGLPNR Sbjct: 612 ------WISENARAVRDRQGNILYFEGTVEDISARKQAELTIHYQAFHDLLTGLPNRALF 665 Query: 189 FENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEV 248 + L + AR H + + F+DLD FK+IND GH GD L QV +RL + + Sbjct: 666 DDRLNQALADARRYQHLLAVFFLDLDRFKVINDTLGHAIGDQLLQQVAQRLLPCLREIDT 725 Query: 249 IGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPET 307 I R GGDEF ++ + + AD + ER+ ++ + L +L+ ASLGI + Sbjct: 726 IARWGGDEFTLLLPHVQTPADSVKIAERLLASLKPPFSLKGHNLHI-TASLGIALYPHDG 784 Query: 308 TDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 D + L AD A+Y+ K+ + + P L+S Sbjct: 785 EDGTTLLRNADAALYRAKEEGRNGLYCYTPMLNS 818 >UniRef50_B4RZW0 GGDEF domain-containing PAS signal transduction protein n=3 Tax=Alteromonadales RepID=B4RZW0_ALTMD Length = 794 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 82/347 (23%), Positives = 142/347 (40%), Gaps = 21/347 (6%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 + + + + + +SL S++ ++ +E + + + E A + Y Sbjct: 201 NVRSAILEKVVNAESLHSVLFDIVNAIESEYPEKICSILLL--EDGKLTKGAAPSLPDFY 258 Query: 64 --IPENFTVSWDYSLCKRAIDENCFFSDEVPDR-----WGDCIA-ARNLGITTFLSTPIH 115 + + C N V D W D A G+ S PI Sbjct: 259 NDAIDGVEIGEGVGACGNTAATNA--PTIVEDISTHTFWHDYKEIAARAGVAACWSQPIR 316 Query: 116 LPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSY 175 GT K + +++ FA + + I++E A+ + Q+ Sbjct: 317 GASTEVIGTFAIYHRYKAVPTPEEVVLIEQFAHIASIAIERE-------RASELIWKQAN 369 Query: 176 TDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQV 235 D+LTGLPNR + ++L A ++ +AF+DLDNFK IND GH+ GD LI+ Sbjct: 370 FDTLTGLPNRNLMLDHLQLALKTADREGDRVAVAFLDLDNFKDINDTLGHDVGDQLLIEC 429 Query: 236 GERLNTLQQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYP 294 ER+ + + + RLGGDEF+V+ + E + I + ++I I Y + +V+ + Sbjct: 430 AERIKQCLRANDTVSRLGGDEFVVILNSIETLSSIDIVVQKILDVILKPYLI-NVERVHT 488 Query: 295 GASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 ASLG+ + D L AD AMY K + + + + Sbjct: 489 SASLGVTLYPDDARDIKGLLKNADQAMYGAKDLGKNSYKYYTQDMQA 535 Score = 44.0 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 52/164 (31%), Gaps = 16/164 (9%) Query: 16 EQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYS 75 + + ++ + V + + +T +D + + + + + Sbjct: 41 DTPKDERFDRITRLASSVFNCRYSSITLIDADRQWFKSAVNLELSES--------GREVA 92 Query: 76 LCKRAI--DENCFFSDEVPD-RWGDCIAARNLG-ITTFLSTPIHLPDGSFYGTLCAASSE 131 C I D+ D D R+ + + + + DG G LC SE Sbjct: 93 FCNHTISQDDALIIPDTKKDPRFEQNPFVIGEPYVRFYAGVSLVV-DGQAVGALCVFDSE 151 Query: 132 KRQWSERAEQVLQLFAGLIAQYIQKEA---LVEQLREANAALIA 172 R +S L+ A + + K+ L EQL E L Sbjct: 152 PRIFSADEIFQLKSLAEMAQSELCKKEYSALSEQLEEYQTRLAQ 195 >UniRef50_C6NZ79 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6NZ79_9PROT Length = 923 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 106/223 (47%), Gaps = 2/223 (0%) Query: 119 GSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 G + G + R + + + ++ G + YI + EA + +Y D Sbjct: 439 GYWQGEIWDKHKSGRIYPKWMSITAVRDEHGKVVNYISIARDTTEQTEAEKNIHFLAYYD 498 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 LTGLPNR + + L + ++A H+ + F+DLD FK IND GH+ GD L V Sbjct: 499 VLTGLPNRTLLRDRLGQMIAVAHRDKHQFSLIFLDLDRFKYINDSMGHSVGDRLLQSVAL 558 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGAS 297 R+ + G+ + RLGGDEF+V+ + S + +++ + Y L D + AS Sbjct: 559 RIQDCVREGDTVARLGGDEFIVLLREAGESAASVVAQKLLIALATPYDL-DGQVISTQAS 617 Query: 298 LGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 +GI + DAD+ + AD+AMY+ K+ + P ++ Sbjct: 618 IGISIYPDQAQDADTLIKNADMAMYRAKEEGRNNFQFFVPEMN 660 >UniRef50_C4UW07 Phosphodiesterase n=1 Tax=Yersinia rohdei ATCC 43380 RepID=C4UW07_YERRO Length = 875 Score = 297 bits (760), Expect = 5e-79, Method: Composition-based stats. Identities = 82/347 (23%), Positives = 140/347 (40%), Gaps = 16/347 (4%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 M + + +V ++L +E+ L ++ L +E + + + D L H+ A N Sbjct: 278 MYEVLQYKVLEALVRERPLAEVMSLLCNEVERIAPEVTASILFADGPDTLSHLA-APNLP 336 Query: 61 KMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCI------AARNLGITTFLSTPI 114 +Y V S EV D D + G+ STPI Sbjct: 337 SIYTDSLINVPIGPSAGSCGTAAFRKEPVEVQDIATDPLWAGYRHLVLPHGLLACWSTPI 396 Query: 115 HLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 GT + R SE Q+++L A L + +++E + + + Sbjct: 397 FSSQEKVIGTFAFYYKQVRSPSEFHRQLVKLIANLCSLAMEREL-------SRKQIQQLA 449 Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 + D LTGLPNR +LA H + + I+LD FK +ND GH +GD L Sbjct: 450 FYDPLTGLPNRSQFLVYAQQAITLATESGHSLAVLVINLDRFKQVNDSLGHAAGDELLAA 509 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYP 294 + +RL ++IGRL GDEF++++ + E++ + + V++ P Sbjct: 510 IAQRLRHELSKNDLIGRLSGDEFIILAP-CTMQQATVKVEKLLSLLSQPCIIASVNI-IP 567 Query: 295 GASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 AS+GI D ++ ADIAM++ KK +++ Sbjct: 568 SASIGISLYPENGVGMDMLMNHADIAMHKAKKLGSGHFNFFSVEMNN 614 >UniRef50_Q5P4W8 Putative uncharacterized protein n=2 Tax=Proteobacteria RepID=Q5P4W8_AZOSE Length = 1039 Score = 297 bits (760), Expect = 5e-79, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 117/229 (51%), Gaps = 3/229 (1%) Query: 115 HLPDGSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQ 173 + GS+ G + + S+ ++ + ++ G IA+Y+ + + + ++ A+ Q Sbjct: 541 IVESGSWAGEVWSRRSDGDRYPQWVTITAVRDTDGRIAEYVTLFSDITERKQQEVAMWRQ 600 Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 + D LTGL NR + + L + AR K+ + F+DLD FK IND GH+ GD L+ Sbjct: 601 ANFDPLTGLANRSLLQDRLDRALAHARRHGCKVGLLFLDLDGFKWINDSLGHDVGDELLV 660 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLY 292 V RLN+ ++ + + RLGGDEF VV + + AD+ ++ +++ +R + L + Sbjct: 661 DVARRLNSCVRDEDTVARLGGDEFTVVVHDLADRADLGAIADKLVAVLREPFALRGAR-H 719 Query: 293 YPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + S+GI + D + L ADIAMY+ K+ + P + + Sbjct: 720 HISGSVGITVFPDDGDDVQTLLRNADIAMYKAKQAGKNRAQPYAPHMQA 768 >UniRef50_Q2W807 Predicted signal transduction protein n=4 Tax=Magnetospirillum RepID=Q2W807_MAGSA Length = 880 Score = 296 bits (758), Expect = 8e-79, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 3/223 (1%) Query: 121 FYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSL 179 + G + + E V++ G I QY + + + ++ + +Y D L Sbjct: 388 WQGEIWNRRKNGEIYPEWLTINVIRDDTGDITQYAAIFSDITERKKTEERIKNLAYFDVL 447 Query: 180 TGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERL 239 T LPNRR + L + A ++ I F+DLD FK IND GH GD L++ R+ Sbjct: 448 TALPNRRLFTDRLQIAIANAHRHGQQLAIMFLDLDLFKRINDSLGHGVGDQVLVETAARI 507 Query: 240 NTLQQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASL 298 + + G+ + RLGGDEF V+ ++ D++ L ER+ ++ + + D +LY S+ Sbjct: 508 SHCVREGDTVARLGGDEFTVLLPELDHLEDVAKLAERVIAHVKQPFLVDDNELYVTT-SI 566 Query: 299 GIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 GI + T ++ + AD AMY+ K + + + A+++ Sbjct: 567 GIAVYPEDGTTVEALIKNADTAMYRAKDLGRNSYQLYTAAMNA 609 >UniRef50_B0TF94 Predicted signal transduction domain protein n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TF94_HELMI Length = 853 Score = 296 bits (758), Expect = 1e-78, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 108/241 (44%), Gaps = 16/241 (6%) Query: 117 PDGSFYGTLCAASSEKRQW----------SERAEQVLQLFA-----GLIAQYIQKEALVE 161 DG FY + A E QW E L + A G QY + + Sbjct: 317 HDGEFYRKMWKALLETGQWQGEIWNRRKSGELYAAWLTISAIKDSHGRTTQYAAIFSDIT 376 Query: 162 QLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLIND 221 + + + Q+Y D+LT LPNR + LT + A + + + F+DLD FK IND Sbjct: 377 EDKRNQERIKHQAYHDALTDLPNRLLFIDRLTQAIAQATRNCYMLAVLFLDLDRFKQIND 436 Query: 222 RFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQI 280 +GH GDL L V RL ++ + + RLGGDEF ++ D + + ++I + Sbjct: 437 TYGHALGDLLLQGVAGRLRRAVRDSDTVARLGGDEFTILLPQIGSVEDAAKVAQKILASL 496 Query: 281 RGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 R + + + S+GI + +A++ +H AD AMY+ K + + P L+ Sbjct: 497 RQPWSFEGIPSFCITTSIGIAVCPTDGEEAETLMHNADAAMYRAKAQGRNHYQLYTPELN 556 Query: 341 S 341 + Sbjct: 557 A 557 >UniRef50_Q3JAR2 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=2 Tax=Nitrosococcus oceani RepID=Q3JAR2_NITOC Length = 944 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 108/229 (47%), Gaps = 11/229 (4%) Query: 119 GSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIAQ 173 G + G L + +R+ E + A I ++ + + ++ L Sbjct: 458 GQWQGELWS----QRKNGEIYPLWVTANAVRNSKEEITHFVAIFSDITLRKQTEQRLYYL 513 Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 ++ D+LTGLPNR + L A+ +H+I + FIDLD FK IND GH GD+ L Sbjct: 514 AHHDALTGLPNRSLFLDRLEHAIHHAQRHHHRIAVLFIDLDRFKFINDTLGHPIGDILLK 573 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLY 292 QV ER+ + + I RLGGDEF V+ N + + IS + ++I +++ +L+ Sbjct: 574 QVAERMRLNIRAEDTIARLGGDEFTVIIENFTDTSAISLITQKIISACEKPFNIKGNELF 633 Query: 293 YPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 AS+G+ + +A L AD AMYQ KK + +++ Sbjct: 634 V-SASIGVSLYPEDGHEASMLLQRADAAMYQAKKRGKSCCQFFTTEINT 681 >UniRef50_C4T5P6 Phosphodiesterase n=8 Tax=Yersinia RepID=C4T5P6_YERIN Length = 865 Score = 295 bits (756), Expect = 2e-78, Method: Composition-based stats. Identities = 82/347 (23%), Positives = 149/347 (42%), Gaps = 15/347 (4%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 M + + +V ++L KE+ LE ++ L +E + + + +V + L H+ A + Sbjct: 266 MYEVLQYKVLEALVKERPLEEVMSLLCHEVERIAPEVTASILQVSGQNHLNHLA-APSLP 324 Query: 61 KMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCI------AARNLGITTFLSTPI 114 +Y V EV D + + G S+PI Sbjct: 325 LIYTAALACVPIGPISGSCGTAAFRKEPVEVRDIATNPLWESYRHLILPYGWLACWSSPI 384 Query: 115 HLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 G+ GTL E R SE Q+++L A L + +++E +++ + + Sbjct: 385 MSSQGNVLGTLAFYYKEVRGPSEFHIQLVKLIANLCSLAMERE-------QSHKQIQRLA 437 Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 + DSLTGLPNR +LA N+ + + I+LD FK +ND G +GD L Sbjct: 438 FYDSLTGLPNRTQFLIYAKQALALATETNYTLAVLVINLDRFKQVNDSLGLAAGDELLAL 497 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYP 294 + +RL + ++IGRL GDEF+++ + E++ + + V++ P Sbjct: 498 IAQRLRSEMSKDDIIGRLSGDEFIIILAPCTMQQATVKVEKMLSLLSQPCQIASVNI-IP 556 Query: 295 GASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 AS+GI + D+ ++ ADIAM++ K + +++ Sbjct: 557 SASVGISLYPENGLEMDALMNHADIAMHKAKDMGRGHFNFFSAEMNT 603 >UniRef50_C3X2S2 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=3 Tax=Oxalobacter formigenes RepID=C3X2S2_OXAFO Length = 1049 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 64/240 (26%), Positives = 106/240 (44%), Gaps = 16/240 (6%) Query: 117 PDGSFYGTLCAASSEKRQWSER---------------AEQVLQLFAGLIAQYIQKEALVE 161 D +FY T+ A + +W Q ++ G + YI + Sbjct: 547 HDRNFYATMWEAIETEGRWQGEVWNRRKDGSLYPEWLLIQTMRDSRGTLTHYIGTFTDLT 606 Query: 162 QLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLIND 221 + +E + ++ D LTGLPNR + SLA+ + + + F+DLDNFK +ND Sbjct: 607 ERKETEERVQWLAHFDPLTGLPNRTLLHIRSNLAISLAQRRHEPLALMFLDLDNFKNVND 666 Query: 222 RFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIR 281 GH GD L Q +RL + + I RLGGDEF++V + + L ER+ Sbjct: 667 SLGHGVGDELLKQFSQRLVNAVREQDTISRLGGDEFVLVLPGTDTDGAAYLAERLLNIAA 726 Query: 282 GEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 +Y++ ++ S+GI + TD D+ +AD AMY+ K+ + + + Sbjct: 727 RQYNIERHEI-NLTVSIGIAMYPTDGTDFDTLWRSADAAMYRAKQSGRNDYCFFTTEMQA 785 Score = 51.3 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 48/163 (29%), Gaps = 19/163 (11%) Query: 54 MFARNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAAR------NLGIT 107 A + M I F + S AI E + + D W D A + I Sbjct: 178 ELAEPFRTMSIVSRFDNIRENSPAGIAIREK--RTVWIQDVWKDPFLANWIELFNKMEIR 235 Query: 108 TFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREAN 167 + + P++ DG G L S E + +++ +L I + ++ Sbjct: 236 SLAAFPLY-QDGKTIGVLKVYSPEPESYDAQSKNLLTEMTSDINFALDNFFHEALRKQTQ 294 Query: 168 AALIAQSYTDSLTGLPN-RRAIFENLTTLFSLARHLNHKIMIA 209 L N RR E + + LN Sbjct: 295 KELEESEN--------NYRRLYTERM-QAEEEVQRLNRLYAAL 328 >UniRef50_A0L9S8 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9S8_MAGSM Length = 971 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 61/231 (26%), Positives = 110/231 (47%), Gaps = 11/231 (4%) Query: 117 PDGSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALI 171 DG++ G + +R+ E + L + G QY+ + + + ++A ++ Sbjct: 477 QDGAWEGEIW----NRRKSGETYPEWLSIATVTNDKGETVQYVAAFSDITKRKQAEETIL 532 Query: 172 AQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLF 231 Q+ D LT LPNR + L T ++ ++ + FIDLD FK +ND GHN GD Sbjct: 533 HQANYDFLTDLPNRNLFHDRLQTELKRSQRSGQQVALLFIDLDRFKFVNDTLGHNVGDQL 592 Query: 232 LIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVD 290 L +V RL + + I RLGGDEF V+ ++ L + + ++ Y + D + Sbjct: 593 LREVAIRLGHCVRESDTIARLGGDEFTVILPELHGPEGVARLAQGMIDKLEERYCIQDHE 652 Query: 291 LYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 L+ AS+GI + + + AD+AMY+ K++ + + +++ Sbjct: 653 LFI-SASIGITIYPEDADNMMDLVKNADVAMYRAKENGRGSFCFYTAEMNA 702 >UniRef50_Q0EYI6 Sensory box-containing diguanylate cyclase, putative n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EYI6_9PROT Length = 800 Score = 294 bits (754), Expect = 3e-78, Method: Composition-based stats. Identities = 68/298 (22%), Positives = 127/298 (42%), Gaps = 12/298 (4%) Query: 40 YLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCI 99 + V R ++ RN + + + LC +A D + I Sbjct: 509 SIFLVVKGERKLEMVAQRNLPDSLLQSCGMLPFGRCLCGKAAATRQLIYVNHLDEQHE-I 567 Query: 100 AARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEAL 159 + PI +G +G L + E ++ L+ A +A I Sbjct: 568 VYDGIQPHGHYCIPIET-EGELFGVLNIYVDVEHVSDESEKKFLKTVADTLAVVI----- 621 Query: 160 VEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLI 219 + +++ L ++ D LTGLPNR ++ L +LA+ + F+DLD+FK I Sbjct: 622 --ERKQSEERLQQLAHNDMLTGLPNRTLFYDRLNQALALAQRHKQAFAVMFLDLDHFKEI 679 Query: 220 NDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADI-SSLRERIQQ 278 ND GH+ GDL L + RL + ++ + + R+GGDEF ++ + + E++ + Sbjct: 680 NDTLGHDMGDLLLREAATRLRSCVRSMDTVARMGGDEFTIILTETAVREAVEKVAEKLLR 739 Query: 279 QIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAH 336 +++ + L ++ + G S+GI D+++ + ADIAMY K+ + + Sbjct: 740 ELQQPFSLNG-EIRHVGCSIGIALYPKHGLDSETLIKHADIAMYDAKRE-RNSYCFFS 795 >UniRef50_C4K931 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Thauera sp. MZ1T RepID=C4K931_THASP Length = 855 Score = 294 bits (753), Expect = 4e-78, Method: Composition-based stats. Identities = 81/347 (23%), Positives = 153/347 (44%), Gaps = 36/347 (10%) Query: 20 ESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF----------- 68 E + L+ ++++ ME Y+ ++ R + + + + + +Y+ E Sbjct: 261 EGELVDLVSFKDILSGMELAYVHELHDALRARDLALSASQRDLYLAEKVIESSLEGVMVT 320 Query: 69 --------TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGS 120 + A +E + V + A L DG Sbjct: 321 DAHARILSVNPAFTRMTGYAPEEVVGLNPSVLNSGRQSPAFYARMWDGLLG------DGQ 374 Query: 121 FYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIAQSY 175 + G + +R+ E Q+L + A G++ Y + +L+E A + +Y Sbjct: 375 WQGEVW----NRRKTGEVYPQLLHITAIRDREGVLTHYAALFTDISRLKETEARIRDLAY 430 Query: 176 TDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQV 235 D LTGLPNRR + + L + A L ++ + F+DLD FK IND GH GD L+++ Sbjct: 431 YDPLTGLPNRRLLDDRLQVELAHAARLRCRLAVMFVDLDRFKRINDSLGHAVGDKLLVEI 490 Query: 236 GERLNTLQQNGEVIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYP 294 RL ++ + + R+GGDEFLVV N + +++ R+ ++R ++ +L Sbjct: 491 AARLRASLRDDDTVARMGGDEFLVVLNNLSGPDEAATMARRMVAELRRPVNVEGRELVVT 550 Query: 295 GASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 S+G+ ++ DAD+ + AD+AMY+ K + + + PA+++ Sbjct: 551 T-SVGVAVYPDDSRDADTLVKHADVAMYRAKDEGRNSFQLFEPAMNA 596 >UniRef50_Q39R25 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=3 Tax=Bacteria RepID=Q39R25_GEOMG Length = 905 Score = 293 bits (750), Expect = 7e-78, Method: Composition-based stats. Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 3/208 (1%) Query: 135 WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTT 194 W+E ++ G++ YI + + R L+ Q+ D LTGLPNR + + L Sbjct: 421 WNELFIAPVRDRDGVVTNYIGVMNDITEHRRYEEQLVYQATHDPLTGLPNRNLLQDRLGQ 480 Query: 195 LFSL-ARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLG 253 +L A + I + F+DLDNFK +ND GH GD+ L V RL + G+ + RLG Sbjct: 481 ALALEAFRRRNPICVMFLDLDNFKKVNDTLGHTVGDMLLKAVANRLKNCLRGGDTVARLG 540 Query: 254 GDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADS 312 GDE+++V N E D+ ++ +++ L ++Y AS+GI + D+ Sbjct: 541 GDEYIIVLPNVREVPDVITVAKKMINVFAAPLLLMGNEIYV-TASIGIALFPTDGETVDA 599 Query: 313 ALHAADIAMYQEKKHKQKTPFVAHPALH 340 L AD AMY K+ + ++ Sbjct: 600 LLKNADAAMYHAKEQGKNNYQFYSAEMN 627 >UniRef50_B8HWB1 Diguanylate cyclase/phosphodiesterase with FHA and GAF sensor n=2 Tax=Cyanothece sp. PCC 7425 RepID=B8HWB1_CYAP4 Length = 884 Score = 293 bits (750), Expect = 7e-78, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 111/234 (47%), Gaps = 11/234 (4%) Query: 104 LGITTFLSTPIHLPDGSFYGTLCAASSEK-RQWSERAEQVLQLFAGLIAQYIQKEALVEQ 162 GI + L PI + D +G + + + R WS+ E VL + A I+ I Q Sbjct: 385 AGIKSLLIVPILVDD-QLWGCIGFDACQSSRCWSKNEEAVLAMMAVSISGAI-------Q 436 Query: 163 LREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDR 222 + + Q++ D LT LPNR + L S A K+ + F+DLD FK IND Sbjct: 437 RQHKEQVIRYQAFHDLLTDLPNRALFIDRLNLALSNAHRSGEKLSVLFLDLDRFKTINDT 496 Query: 223 FGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIR 281 GH+ GD L V RL + G+ I R GGDEF ++ D++ +R+ + Sbjct: 497 LGHSVGDQLLKAVAHRLTHCLREGDTIARWGGDEFTILLPQIHQVNDVAKTAQRMLSALE 556 Query: 282 GEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVA 335 +HL + +LY S+GI D + D ++ + AD+A+YQ K+ + T Sbjct: 557 QPFHLENHELYI-TPSIGIAIYDLDGHDGETLIKHADMALYQAKQLGRNTYQFF 609 >UniRef50_Q3IEZ9 Putative uncharacterized protein n=2 Tax=Pseudoalteromonas RepID=Q3IEZ9_PSEHT Length = 842 Score = 293 bits (750), Expect = 8e-78, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 113/228 (49%), Gaps = 10/228 (4%) Query: 119 GSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIAQ 173 G + G +C +++ + + L + A Y + + + + A ++ Sbjct: 351 GVWQGEIC----NRKKNGDIYIEWLTIIEIKEPNNSDAIYAAIFSDITERKNAEDKIVQL 406 Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 +Y D LTGLPNRR + L + A H + + FIDLD FK +ND GH++GD L Sbjct: 407 AYFDELTGLPNRRLFNDRLKMALAAAHRDQHLLAVMFIDLDRFKEVNDSLGHSAGDCLLT 466 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYY 293 V R+ G+ + RLGGDEF+V+ N+ ++SL ++I + + L V++ Sbjct: 467 LVAARIEATLNEGDTLARLGGDEFVVLCEINKIDAVASLADKILNNLNSPFQLDHVEVGV 526 Query: 294 PGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 AS+G + D+++ L ADIAMY+ K + + + P++++ Sbjct: 527 -TASIGAAVYPDDGLDSETLLKHADIAMYRSKDVGRNSFQLFKPSMNA 573 >UniRef50_A0L8P4 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8P4_MAGSM Length = 754 Score = 293 bits (750), Expect = 8e-78, Method: Composition-based stats. Identities = 72/336 (21%), Positives = 135/336 (40%), Gaps = 29/336 (8%) Query: 7 ARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPE 66 R+S +A ES +R ++ V + S + D + + I A + E Sbjct: 170 ERLSNEVAVRMRAESGLR----LIHKVFENTSEAIILTDPQGMILDINPAFTEITGFSRE 225 Query: 67 NFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLC 126 S D N+ +G + G + Sbjct: 226 EALGHNPRSF---------------KSDRHDATFYTNM-WRKIA------EEGFWQGEIW 263 Query: 127 AASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNR 185 + +R ++ AG + YI + + + + L +Y D+LT LPNR Sbjct: 264 DRRKNGEIYPKRLTINAVRNQAGEVENYIGIFSDISESKATELKLERLAYYDALTQLPNR 323 Query: 186 RAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQN 245 + L F A+ ++ + FIDLD FK +ND GH++GD L V +RL + Sbjct: 324 MLFHDRLEHEFYNAQRHRKQVAVFFIDLDRFKQVNDTLGHSAGDELLQHVAQRLEGCVRA 383 Query: 246 GEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVD 304 + + R+GGDEF V+ + ++N ++ + ++ ++++ + D++ GAS+GI Sbjct: 384 ADTVARMGGDEFTVILADISDNESVARVARKVLEELQKSISIKGHDIFV-GASIGIALYP 442 Query: 305 PETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 D ++ AD+AMY+ K+ + ++ Sbjct: 443 DNGNDVETLTKNADMAMYRAKESGRGNYKFFSEEMN 478 >UniRef50_Q21SS1 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21SS1_RHOFD Length = 571 Score = 292 bits (749), Expect = 1e-77, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 11/223 (4%) Query: 119 GSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIAQ 173 G + G + +R+ E + L + A G + Y+ + + + A ++ Sbjct: 348 GHWQGEIW----NRRRTGETYPEWLTINAVSNDDGEVTHYVGVFSDITTRKAAEEQVLFL 403 Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 ++ D LTGLPNR + L A K+ + F+DLDNFK ND GH+ GD L Sbjct: 404 AHHDGLTGLPNRALFADRLHQAIVHAHRDRAKVAVMFLDLDNFKQTNDTLGHHIGDQLLQ 463 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLY 292 V +RL + G+ + RLGGDEF VV + N DI+ L ++I + L ++ Sbjct: 464 MVAQRLTNCMREGDTVARLGGDEFTVVLESITNTGDIAYLSQKIIDTVSHPLLLDGHEIA 523 Query: 293 YPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVA 335 S+G+ ++ ++D + AD AMY+ K+ + Sbjct: 524 V-TCSIGVSVYPDDSEESDDLIKYADTAMYRAKEGGRNNFRFF 565 >UniRef50_Q2W1Z2 Hypothetical 1041 kDa protein in hypE 3'region n=2 Tax=Proteobacteria RepID=Q2W1Z2_MAGSA Length = 1510 Score = 292 bits (749), Expect = 1e-77, Method: Composition-based stats. Identities = 74/326 (22%), Positives = 138/326 (42%), Gaps = 20/326 (6%) Query: 21 SLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPE--NFTVSWDYSLCK 78 +VR + + T + + RL +F R + + I + ++ + S C+ Sbjct: 928 GVVRAVCSQS-----TDVTMKHHAEEQLRLAAKVFDRAGEAITITDSSGNIITVNDSFCR 982 Query: 79 RAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSER 138 + + P ++ + I G + G + +R+ E Sbjct: 983 ITGYSHQEVIGKNPRFLQSGKHGKDF-YDAMWRSLI--EQGCWQGEIF----NRRKNGEI 1035 Query: 139 AEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLT 193 + L + + G + Y+ + + ++ + + + D LTG+PNR + + L Sbjct: 1036 YPEWLTVNSVRDENGSVVNYVAIFSDISAIKSSQRRIEFLATHDELTGIPNRSLLMDRLK 1095 Query: 194 TLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLG 253 + A+ K+ + FIDLDNFK+IND GH+ GD L Q ERL ++ + + RLG Sbjct: 1096 HAVAQAKRQKTKLAVLFIDLDNFKVINDSLGHDVGDQLLKQATERLKHCVRDSDTLARLG 1155 Query: 254 GDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSA 313 GDEF+ V + ++S+ RI + + + D L+ AS+GI + D+ + Sbjct: 1156 GDEFVAVLTDVSLEKVNSVAARIVDFLGASFSINDKSLFV-SASIGISVFPDDGQDSLTL 1214 Query: 314 LHAADIAMYQEKKHKQKTPFVAHPAL 339 L AD AMY+ K+ + + Sbjct: 1215 LKHADTAMYRAKERGRNQYQFFADEM 1240 >UniRef50_Q1JX80 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JX80_DESAC Length = 678 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 73/338 (21%), Positives = 139/338 (41%), Gaps = 24/338 (7%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 I + + + E ++ E + + + + + A ++ Sbjct: 104 IQGFFRDITARKKTEKALQTSEERFRTIYESSVAGIAMLAPDGHFLQ---ANSAFC---- 156 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHL-PDGSFYGT 124 NF + L + I + D++ D AR + + + ++ DGS + Sbjct: 157 -NFLGYNEEELLQMKI-TDVTHPDDIEDTLSRRNIARANRLHSIVCEKRYIRKDGSVF-- 212 Query: 125 LCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 W++ + G + + + +EA + +Y DSLTGL N Sbjct: 213 ----------WAQLSSTWFFDANGNPLYTVPVIQDITRRKEAEERIRELAYYDSLTGLAN 262 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R + L + + +R + + F+DLD FK +ND GH GD L Q ERLN + Sbjct: 263 RTLFNDRLDQVMARSRRRQSRFALMFLDLDRFKGVNDTLGHAVGDAMLRQAAERLNECLR 322 Query: 245 NGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 + + RLGGDEF+++ + E+A++ + ++I + + + LG ++Y S+GI Sbjct: 323 ENDTVARLGGDEFVIILSDYKEDANLPRVADKILKALSSPFDLGVREVY-SSTSVGIAIY 381 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + +A L AD+AMY K+ T +++ Sbjct: 382 PDDGDEATDLLRHADMAMYAAKESGGDTFRFYSSEMNA 419 >UniRef50_B3PHC9 Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PHC9_CELJU Length = 726 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 78/326 (23%), Positives = 143/326 (43%), Gaps = 8/326 (2%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 V +A ++ LE ++ L+E +E + + D + + + A + Y Sbjct: 397 HVLALIAADEPLEDILLSLVEGVEHLKPEMKCSVLLFDRKQQKFSVAAAPSLPDFYNQAI 456 Query: 68 FTVSWDYSL--CKRAIDEN---CFFSDEVPDRWGDCI-AARNLGITTFLSTPIHLPDGSF 121 + + C A+ + + W A + + S PI G Sbjct: 457 AHLQAHDTAGSCGAAVATGKRVIVSNIQTHPNWEAYRQLAAQADLMSCWSEPILNRHGEA 516 Query: 122 YGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTG 181 GT + + + Q+++ A L I+++ +E LRE+ + D+LTG Sbjct: 517 LGTFAIYQHKVAEPTAEDIQLIEESAYLAEIAIERKQALEALRESEERHRMMAQHDNLTG 576 Query: 182 LPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNT 241 LPNR + L S A+ + + + +DLD+FK +ND +GH GD L V RL Sbjct: 577 LPNRALFADRLQQALSYAKRHHKSLAVMLLDLDDFKPVNDTYGHALGDELLKAVALRLQE 636 Query: 242 LQQNGEVIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGI 300 + + + R+GGDEF+++ + A + ++I Q + E+ LG+ ++ G S+GI Sbjct: 637 AVRASDTVARIGGDEFVILLHQIDSPAQARIVSDKIGQLLAQEFWLGEQSIHI-GCSIGI 695 Query: 301 VEVDPETTDADSALHAADIAMYQEKK 326 +++DA H AD MY++K+ Sbjct: 696 AYYPQDSSDARELTHIADQRMYEQKQ 721 >UniRef50_Q1PY13 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PY13_9BACT Length = 857 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 100/207 (48%), Gaps = 2/207 (0%) Query: 135 WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTT 194 W+ + ++ G I+ Y+ + + ++A + +Y DSLT LPNR + L Sbjct: 388 WTSLSLSAIKSNEGFISHYLAIMEDITEHKQAEERIHYLAYYDSLTALPNRELFHDRLNM 447 Query: 195 LFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGG 254 A + +AFID+D FK +ND GH++GD L + +RL + + + + R GG Sbjct: 448 AIIHAHRKQQMLAVAFIDIDRFKKVNDTLGHSTGDRLLKIIADRLKSCIREEDTVSRQGG 507 Query: 255 DEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSA 313 DEF+++ D + + +RI ++++ + D DL AS+GI + T A++ Sbjct: 508 DEFVLLLTEISRMEDANDVTQRILKKLKEPVIIDDHDLCI-SASIGIALYPGDGTTAEAL 566 Query: 314 LHAADIAMYQEKKHKQKTPFVAHPALH 340 L AD AMY K+ + + Sbjct: 567 LKNADSAMYISKESGRDNYHFYSSTVQ 593 >UniRef50_C5V1I4 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Gallionellaceae RepID=C5V1I4_9PROT Length = 935 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 61/222 (27%), Positives = 103/222 (46%), Gaps = 3/222 (1%) Query: 121 FYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSL 179 + G + + E L+ I+ Y+ + + ++ + + D L Sbjct: 456 WRGEIWNKRKNGEIFPEWVTISALRDETSQISHYVAVFLDITERKKEEERINYLANYDVL 515 Query: 180 TGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERL 239 TGLPNR + + + FS A+ N K+ + FIDLD FK IND GH+ GD L V RL Sbjct: 516 TGLPNRYLLSDRIEQAFSSAQRNNFKVAVLFIDLDYFKNINDSLGHDIGDALLKLVAARL 575 Query: 240 NTLQQNGEVIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASL 298 T + + I RLGGDEF+ + + + ++ + E++ + + ++ LG+ L S+ Sbjct: 576 KTCLRRSDTIARLGGDEFVALLSELDSSEEVIFVAEKMIESLTEKFTLGEYQLSI-TPSI 634 Query: 299 GIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 GI + + L AD+AMYQ K + P ++ Sbjct: 635 GICIYPDDGETSVELLRNADLAMYQAKDDGRNNFKFYSPDMN 676 >UniRef50_Q13IZ7 Putative diguanylate cyclase(GGDEF)/ phosphodiesterase(EAL) with PAS/PAC and GAF sensors n=1 Tax=Burkholderia xenovorans LB400 RepID=Q13IZ7_BURXL Length = 847 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 76/343 (22%), Positives = 134/343 (39%), Gaps = 12/343 (3%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 M +++ +V ++A+E + L +E + +VD Sbjct: 246 MREELQQKVLDAMARELPATEVAGILCREVERIAPEVVATFLRVDDGRLFTLAAPRLPVT 305 Query: 61 KMYIPENFTVSWDYSLCKRAI--DENCFFSDEVPD-RWGDCI-AARNLGITTFLSTPIHL 116 + ++ C A +D D W LG+ S P+ Sbjct: 306 VTRAMDGESIGPCAGSCGTAAWRGTPVVVTDIASDPLWTGYRDLVLPLGLAACWSYPVKG 365 Query: 117 PDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYT 176 DGS GT E + ++ + L A +++E +A + ++ Sbjct: 366 ADGSVLGTFAFYYRENHGPVAFHQSLVDMGLSLCALLLERE-------KARMRIHQLAFH 418 Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 D+LTGLPNR L + AR ++ + FIDLD+FK +ND GH +GD L + G Sbjct: 419 DTLTGLPNRNMFETQAQQLLNDARRTERELALVFIDLDHFKRVNDTRGHATGDEVLCETG 478 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGA 296 R ++ ++G+++GRL GDEF+ + + + + ER+ + ++ A Sbjct: 479 RRFKSVLRDGDLLGRLAGDEFVAILPHCGVHQATGIVERLLAATAPPVVVAGAPIH-ASA 537 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 S+GI + + L ADIAMY K + + Sbjct: 538 SIGIAMYPADGEHVPTLLRQADIAMYHAKARGRGHFCFFREEM 580 >UniRef50_A1RPJ9 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=16 Tax=Proteobacteria RepID=A1RPJ9_SHESW Length = 1511 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 58/223 (26%), Positives = 100/223 (44%), Gaps = 3/223 (1%) Query: 120 SFYGTLCAASSEKRQ-WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDS 178 + G + + +++ + G + ++ + + ++A L + D+ Sbjct: 1026 HWVGEIWIRNKQRKAILVWLEINQVIDIKGETSHFVAVFTDITERKKAEQDLRFLASFDT 1085 Query: 179 LTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGER 238 LTGLPNR + L + A N+ + + F+DLD FK IND GH+ GDL L +R Sbjct: 1086 LTGLPNRTLFQDRLNHAITQAHRANNIVALLFLDLDRFKHINDSMGHHVGDLLLKAAAKR 1145 Query: 239 LNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLR-ERIQQQIRGEYHLGDVDLYYPGAS 297 L + G+ + RLGGDEF ++ ++L E++ + + + L D L S Sbjct: 1146 LQNAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLRAFQTPFLLEDKSL-TISTS 1204 Query: 298 LGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 +GI + +ADS + AD AMY K + L+ Sbjct: 1205 IGISLYPNDADNADSLIKFADTAMYHAKSLGRNNFQFYTHKLN 1247 >UniRef50_Q2W154 Putative uncharacterized protein n=2 Tax=Magnetospirillum RepID=Q2W154_MAGSA Length = 802 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 110/222 (49%), Gaps = 3/222 (1%) Query: 121 FYGTLCAASSE-KRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSL 179 + G LC + + W ++ G++ ++ + + Q +E L+ Q+ D+L Sbjct: 319 WQGELCNRAKDGSLFWEYATISPIRDDDGVVTHFMAVKENITQRKETEQQLVHQATHDTL 378 Query: 180 TGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERL 239 TGLPNR + + + +A+ +I + F+DLD FK++ND GH +GD L V +RL Sbjct: 379 TGLPNRLLLEDRVHHAIEVAKREGRRIGLMFLDLDRFKIVNDSLGHVAGDELLKVVSDRL 438 Query: 240 NTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASL 298 + + + RLGGDEF+VV + +++ + E+I + L ++ GAS+ Sbjct: 439 RHTLRRSDTVARLGGDEFVVVLTHFQSTTELAEVAEKISAALDEPVELSGHKVHV-GASI 497 Query: 299 GIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 GI + + ++ + AD AMY+ K+ + T ++ Sbjct: 498 GIAIYPDDGDNFNALMKDADTAMYRAKQKGRNTFCFYDSNMN 539 >UniRef50_C5V330 Diguanylate cyclase with PAS/PAC and GAF sensors n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V330_9PROT Length = 484 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 83/354 (23%), Positives = 144/354 (40%), Gaps = 25/354 (7%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 M ++ + + L + L ++ +++ +E + + + +D E + A + Sbjct: 134 MFEKFRSSTLELLTGDTPLTVILEFIVQGVEQLNSAMNCSILLLDEEGKHLGHGIAPSLP 193 Query: 61 KMYIP--ENFTVSWDYSLCKRAI--DENCFFSDEVP-DRWGDCI-AARNLGITTFLSTPI 114 Y + + C A E D W A G+ S PI Sbjct: 194 AFYNAAIDGVAIGMGVGSCGTAAYTGERVIVEDIATHPYWAPYKTLAAKAGLGACWSEPI 253 Query: 115 HLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 GT +K SE V++ A L + I+++ L E++R+ + Sbjct: 254 RSSFNQVLGTFAIYHKDKNYPSEADIYVIEQSAHLASIAIERKLLEEKVRQ-------LA 306 Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 + D+LT LPNRR + E L S+++ + + FIDLDNFK IND GH GDL LI Sbjct: 307 FYDTLTNLPNRRLLKERLNQAMSVSKRTHCYCALMFIDLDNFKPINDMHGHGIGDLLLID 366 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVVSLNNE------NADISSLRERIQQQIRGEYHLGD 288 +RL + + + + R GGDEF+V+ + + + ++I+ + Y L Sbjct: 367 AAKRLKSCVREMDTVARFGGDEFVVLLSELDVDQAISTSQAQRVAQKIRAALSVPYVLPT 426 Query: 289 VDL------YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAH 336 L + AS+G+ + + D L AD AMY+ K+ + Sbjct: 427 DILPAATIEHRCTASIGVTVFLNQGINQDDILKQADAAMYEAKEAGGNSIRFHD 480 >UniRef50_Q21V50 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21V50_RHOFD Length = 678 Score = 290 bits (744), Expect = 4e-77, Method: Composition-based stats. Identities = 57/220 (25%), Positives = 110/220 (50%), Gaps = 4/220 (1%) Query: 119 GSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 G+++G +C + + E + + ++ G+ + Y+ + + + + + + ++ D Sbjct: 453 GNWHGEICNRRKSGKLYVEWLSIKQVRDEQGVPSHYVAVFSDISERKASEVRMQHLAHFD 512 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 LT LPNR + L + AR ++ + F+DLD FK +ND+ GH GDL L +V Sbjct: 513 VLTNLPNRALFSDRLRQAIAKARRDKTQLALMFMDLDRFKPVNDQLGHQVGDLLLQEVAR 572 Query: 238 RLNTLQ-QNGEVIGRLGGDEFLVVSLNNENADISS-LRERIQQQIRGEYHLGDVDLYYPG 295 RL + + + R+GGDEF+V+ + E ++ + E+I + + +G+ ++ Sbjct: 573 RLLDCVRRESDTVARIGGDEFVVMLPDLETVQAATLVAEKILAALNLVFEIGEHRIHISS 632 Query: 296 ASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVA 335 S+GI D + L +AD AMY K++ + VA Sbjct: 633 -SIGIAIFPEHGQDENHLLKSADAAMYLAKENGRNRVQVA 671 >UniRef50_A5GBG4 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Geobacter RepID=A5GBG4_GEOUR Length = 709 Score = 290 bits (744), Expect = 4e-77, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 103/229 (44%), Gaps = 4/229 (1%) Query: 114 IHLPDGSFYGTLCAASSE-KRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIA 172 I G ++G + W+ + + I +I + + + ++A + Sbjct: 209 IISGGGEWWGEFHNRKKNGELYWASASISPITNGNEQITHFIAFQEDITERKQAEETIKQ 268 Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 +Y D+LTGLPNR E + + A N + + F+DLD FK IND GH GD L Sbjct: 269 MAYYDTLTGLPNRHLFNELMHLALAQAHRHNRLLAVLFLDLDRFKHINDTLGHTVGDQLL 328 Query: 233 IQVGERLNTLQQNG-EVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVD 290 RL + + + R GGDEF+++ + ++ + + ++I + L D++ Sbjct: 329 QASAHRLKECCRRDRDTVARRGGDEFIILLPDIDDVQEAVRVAQKIIDAFTQVFVLPDIE 388 Query: 291 LYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 L+ +GI + D ++ + AD+AMY+ K+ + + ++ Sbjct: 389 LFISTC-IGISIFPNDGRDTETLIKNADMAMYRAKEQGRSRYHLYTSSM 436 >UniRef50_C5D2J8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Geobacillus sp. WCH70 RepID=C5D2J8_GEOSW Length = 568 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 65/310 (20%), Positives = 133/310 (42%), Gaps = 25/310 (8%) Query: 33 VTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVP 92 + + + + D + R+ + A Y E + + + + + + F+ Sbjct: 21 IFEYSNESIIITDAQNRILFVNPAFEIVTGYSAEE-VIGKNPRILQSGMHDKQFY----K 75 Query: 93 DRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIA 151 W D G + G + + + E V++ G + Sbjct: 76 KMWND-----------------IKQHGVWKGEIWNKRKDGELYLEWLTISVVKDQKGNMT 118 Query: 152 QYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFI 211 Y+ + + + + L + D+LT +PNR + + L ++ +++ N + F+ Sbjct: 119 NYVAMFSDITEHKRNVEQLTRLALYDTLTNVPNRYLLEKRLESIIRMSKKHNQSFALLFL 178 Query: 212 DLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN-ADIS 270 DLD FK IND GH GD+ L + +RL + + + I R GGDEF+++ N ++ + + Sbjct: 179 DLDRFKNINDTLGHRVGDMLLKETAQRLKRMLRKQDTIARFGGDEFVIILPNLKHIREAA 238 Query: 271 SLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQK 330 + E+I + ++ + ++Y S+GI + TD ++ + AD AMYQ KK+ + Sbjct: 239 YMAEKIVESLKRPFCFNHQEIYI-STSIGISVYPYDGTDKETLIRMADRAMYQAKKNGRN 297 Query: 331 TPFVAHPALH 340 + H +H Sbjct: 298 QYALYHAGMH 307 >UniRef50_C6P3H7 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P3H7_9PROT Length = 912 Score = 290 bits (743), Expect = 5e-77, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 107/229 (46%), Gaps = 11/229 (4%) Query: 119 GSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIAQ 173 G + G + ++R+ E + L + G + I + Q +E+ + Q Sbjct: 424 GKWIGEIW----DRRKSGEVYPKWLTINTVFNDDGKVHHRIALFTDISQKKESEELIWRQ 479 Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 + D LTGLPN R + L +R + + + F+DLD+FK +ND GH +GDL L Sbjct: 480 ANFDHLTGLPNWRMFHDRLEQEIKKSRRVELPLAVVFLDLDHFKEVNDTMGHATGDLLLK 539 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLY 292 + RL++ + + + RLGGDEF ++ + D I + E I + + LG+ +L Sbjct: 540 EAALRLSSCVRESDTVARLGGDEFALLLGELSDQDSIERVNECILNKFSAPFQLGN-ELA 598 Query: 293 YPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 Y S+G+ + T+ ++ L AD AMY K + A+ S Sbjct: 599 YISVSIGVTIYPSDATEIEALLRNADQAMYAAKNSGRNRSCYYTQAMQS 647 Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 53/180 (29%), Gaps = 10/180 (5%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFA-----RN 58 ++ ++Q++ + + E L + M ++ +VD E++L + Sbjct: 180 SALSEINQAIVRMEQEEQLFPLVCRCAVKFGGMNMAWVAQVDKESKLLLPAASYGAGQDY 239 Query: 59 SQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIA----ARNLGITTFLSTPI 114 + I V A EN D A G + + PI Sbjct: 240 LDGIVISPLADVPEGRGPVGVAFRENHPVIINDSSNDPDFAPWQNRASEQGWHSIAAFPI 299 Query: 115 HLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 G + L + + +L + I+ + Q + A +L + Sbjct: 300 -PRGGRPFAVLSVYHQHIDAFDGESIALLDEMSRDISFSLDNFDREVQRKAAEQSLQLAA 358 >UniRef50_C5V5K2 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V5K2_9PROT Length = 925 Score = 290 bits (743), Expect = 5e-77, Method: Composition-based stats. Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 16/233 (6%) Query: 119 GSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIAQ 173 G + G + +KR+ E ++L ++A G++ Y+ + + + A +I+ Sbjct: 432 GKWQGEIW----DKRKNGEIYPKLLNIYAVKSKNGVVTHYVGSYTDLTERKMAEEKIISL 487 Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 ++ D+LTGLPNRR + + L + + FIDLD FK +ND GH+ GDL L Sbjct: 488 AFYDTLTGLPNRRLLLDRLNYALASGLRTGKNGALLFIDLDKFKTLNDTLGHDIGDLLLK 547 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLR------ERIQQQIRGEYHLG 287 QV RL + + + R+GGDEF+V+ + + + E+I +R Y L Sbjct: 548 QVAHRLKACVREIDTVARIGGDEFVVMLEDLNIESVEAAAQTEVIGEKILAALRMPYQLL 607 Query: 288 DVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + ++ S+GI D L ADIAMYQ KK + + Sbjct: 608 TNE-FHSSVSIGISLFSNNGQSQDEPLKQADIAMYQAKKSGRNKLRFFDQRMQ 659 >UniRef50_A1K4Z0 EAL/GGDEF/PAS/PAC-domain containing signalling protein n=2 Tax=Rhodocyclaceae RepID=A1K4Z0_AZOSB Length = 880 Score = 290 bits (742), Expect = 6e-77, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 106/229 (46%), Gaps = 11/229 (4%) Query: 119 GSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIAQ 173 G + G + +R+ E + L + A G ++ YI + + +E+ A + Sbjct: 386 GQWQGEIW----NRRRSGEIYPEWLSITAITEGDGGVSHYIGIFSDITDRKESEARIRHL 441 Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 ++ D+LTGLPNR + + L AR + + + F+DLD FK IND GH GD L Sbjct: 442 AHHDALTGLPNRLLLQDRLGQAILKARRNSTQAAVLFLDLDRFKTINDTLGHEIGDGLLR 501 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLY 292 QV +R + + + R GGDEF++V + E+ D ++ +I + LG +L Sbjct: 502 QVTQRCLGAVRETDTVARQGGDEFVIVLPDLEHGQDAGTIARKILAALTEPCRLGPHELT 561 Query: 293 YPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 G S+GI + D L AD AMY+ K + +++ Sbjct: 562 VTG-SIGIALYPGDGADPSMLLRNADAAMYRAKADGRNGFQFYAADMNT 609 >UniRef50_C7RN47 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RN47_9PROT Length = 1542 Score = 290 bits (742), Expect = 6e-77, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 108/226 (47%), Gaps = 10/226 (4%) Query: 119 GSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIAQ 173 G + G + +R+ E + L + G + Y+ + + ++RE+ + Sbjct: 1053 GVWQGEIW----NRRKNGEPYLEWLSINTVKDKNGKVVNYVGMFSDITKVRESQQRIEYL 1108 Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 + D LTGLPNR + L + A + + FIDLDNFK++ND GH +GD L Sbjct: 1109 ATHDELTGLPNRALFNDRLNLALAHAERSRESVGVVFIDLDNFKVVNDTLGHETGDKLLK 1168 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYY 293 Q RL + + + RLGGDEF+V+ +N + + ER+ + YH G+ + + Sbjct: 1169 QAAMRLLECVRAEDTVARLGGDEFVVLLVNADRQQATLTAERLLTGLSTSYHFGEHECFI 1228 Query: 294 PGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 AS+G+ + +DA+S + AD AMY+ K H + L Sbjct: 1229 -SASIGLSMFPEDASDANSLMRNADSAMYRAKDHGKNGFRFFSADL 1273 >UniRef50_Q087W4 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q087W4_SHEFN Length = 1144 Score = 289 bits (741), Expect = 8e-77, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 2/207 (0%) Query: 135 WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTT 194 W + AG+ Y+ + V Q ++ ++ Q++ DSLTGLPNR + L+ Sbjct: 666 WEHAHIAPIFDNAGVTKHYLALKQDVTQYKQQEEKILHQAHYDSLTGLPNRLLSLDRLSQ 725 Query: 195 LFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGG 254 + A + + + F+DLD+FK +ND GH+ GD LIQ RL + +V+GRLGG Sbjct: 726 MLKDAHRAKNNVAVLFLDLDDFKKVNDTMGHSVGDELLIQAAVRLKNTIRESDVVGRLGG 785 Query: 255 DEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSA 313 DEF+++ N NE ++ + ++ +Q + L + +L S+GI ++ D Sbjct: 786 DEFIIILSNINEPIEVEIIASKLLEQFYQPFRLENREL-VSTISIGIALYPLDSEDPKEL 844 Query: 314 LHAADIAMYQEKKHKQKTPFVAHPALH 340 L AD AMY K + T ++ Sbjct: 845 LRQADSAMYHSKDRGRNTYNFYTHQMN 871 >UniRef50_C6WWM6 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WWM6_METML Length = 651 Score = 289 bits (741), Expect = 8e-77, Method: Composition-based stats. Identities = 69/333 (20%), Positives = 133/333 (39%), Gaps = 21/333 (6%) Query: 10 SQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFT 69 ++L K+QS+E ++ E + + + D+ + + E + Sbjct: 72 RRTLKKQQSIEQSLQASEERWKFALEGSGDGVWDWDIPS-------DHVFRSARWSEIYG 124 Query: 70 VSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLS-TPIHLPDGSFYGTLCAA 128 + + + D++ D ++S + DGS+ TL Sbjct: 125 YAENEIIATAVAGRELVHPDDLAILISDVQNYFAGNSNVYISEFRLRCKDGSWKWTLARG 184 Query: 129 SSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAI 188 + + + ++ I + + + A + ++ D LTGLPNR Sbjct: 185 MTVSKSADGKPLRM-----------IGTHTDITNRKRSEAQVTHLAHYDQLTGLPNRVLF 233 Query: 189 FENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEV 248 + A+ + + F+DLD FK +ND GH+ GD+ L V RL ++ + Sbjct: 234 LDRFKQDIKKAQRTGQIVTLMFLDLDKFKEVNDSLGHDIGDMLLKDVARRLENCVRDSDT 293 Query: 249 IGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPET 307 + R+GGDEF ++ + N +I + + I Q+ +HLGD ++ + S+GI + Sbjct: 294 VARMGGDEFTIILNDINSQVNIERIAQDILNQLTMPFHLGD-EVIHVSTSIGISNYPKDD 352 Query: 308 TDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 T+ + L AD AMY K+ + P + Sbjct: 353 TEVELLLKNADQAMYVAKEQGRNRYQYFTPVMQ 385 >UniRef50_B0CAC5 Diguanylate cyclase/phosphodiesterase n=7 Tax=cellular organisms RepID=B0CAC5_ACAM1 Length = 901 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 69/268 (25%), Positives = 126/268 (47%), Gaps = 12/268 (4%) Query: 77 CKRAIDENCFFSDEVPDRWG-DCIAARNLGITTFLSTPIHLPDGSFYGTLCAAS-SEKRQ 134 A+ + V D + I + L PI + + F+G + + + + Sbjct: 359 WYHALTDEVTIRSLVQDLPEIEQQVLAQDSILSILVVPIIV-NHRFWGFIELHNCTREYH 417 Query: 135 WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTT 194 WS + E +L + I+ + Q ++ + Q++ D+LT LPNR + L Sbjct: 418 WSLQEESILFAMSASISAAL-------QRQDKEEIIRHQAFHDALTDLPNRVLFNDRLNI 470 Query: 195 LFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGG 254 + A+ N + + F+DLD FKLIND GH+ GD L +V RL ++G+ + R GG Sbjct: 471 ALASAQRNNGSVAVMFMDLDRFKLINDTLGHSIGDELLKEVALRLQDCLRDGDTVARWGG 530 Query: 255 DEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSA 313 DEF V+ E+ D + RI ++ + + +L+ S+GI + +A+ Sbjct: 531 DEFTVLLPKIESVNDAINTAYRILDALKAAFVIRRHELFVTT-SIGIAIYPEDGQEAEIL 589 Query: 314 LHAADIAMYQEKKHKQKTPFVAHPALHS 341 L AD+A+Y+ K+ + T + +P +++ Sbjct: 590 LQNADVALYRSKEQGRGTCQLYNPTMNA 617 >UniRef50_P72843 Regulatory components of sensory transduction system n=1 Tax=Synechocystis sp. PCC 6803 RepID=P72843_SYNY3 Length = 840 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 103/207 (49%), Gaps = 2/207 (0%) Query: 135 WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTT 194 W + + G++ Y+ + + + ++ AL Q++ D LTGLPNR + L Sbjct: 371 WERASISPISNQQGIVTHYVAVKEDITKEKQQAEALFHQAHYDHLTGLPNRILAKDRLQQ 430 Query: 195 LFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGG 254 A H + F+DLDNFK +ND GH++GD L++V ERL + + + RLGG Sbjct: 431 AIESALRQKHIFGLMFLDLDNFKKVNDTLGHDAGDQLLVEVSERLQRALRQTDTVARLGG 490 Query: 255 DEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSA 313 DEFL++ ++ + ++ +R+ + +R +L ++ + G S+GI + AD Sbjct: 491 DEFLIILDQVSHSRKLMAIAQRLLRVMRQPVNLQGLEFFVHG-SIGITVFPDDGFHADVL 549 Query: 314 LHAADIAMYQEKKHKQKTPFVAHPALH 340 L AD AMY K + P ++ Sbjct: 550 LRNADTAMYAAKLAGRNMFRFFTPHMN 576 >UniRef50_Q15SE8 Diguanylate cyclase with GAF sensor n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15SE8_PSEA6 Length = 515 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 77/340 (22%), Positives = 148/340 (43%), Gaps = 15/340 (4%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 +QI + + +A L ++ ++ +E + VD + R + A + Sbjct: 170 NQIHNNILELIASSSKLSKILPAIINGIENEIPNALCSVLLVDRKGRRLLVGAAPSLPDY 229 Query: 63 YIPENFTVSWDYSL---CKRAIDENCFFSDEVPDR--WGD-CIAARNLGITTFLSTPIHL 116 Y +S + + + A ++ W D + + + S PI Sbjct: 230 YNLAIDGLSIGHGIGAWAEAAFSSKRVVVKDIASHPGWVDWTELTQKAHLASCWSEPIIG 289 Query: 117 PDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYT 176 +G G+ ++ ++++ F L I++E +A+ + Q+ Sbjct: 290 NNGKVLGSFVIYFQKQYSPKNDELKLIEQFVNLTRIAIERE-------KADKLIWQQANY 342 Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 DSLT LPNR ++E+L + + A ++ +A +DLD FK +ND GH +GD+ L++ Sbjct: 343 DSLTYLPNRNLLYEHLASAMTQANREKKQLAVAMLDLDKFKAVNDTLGHAAGDIVLVECS 402 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPG 295 +R+ + ++ RLGGDEF++V + DI++L ++ + Y + D + Y Sbjct: 403 KRIKGCIRKSDIAARLGGDEFIIVLRDAISPEDIAALGRKLSDALAKPYFIQD-ESVYCT 461 Query: 296 ASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVA 335 AS+GI + D D+ L AD AMY+ K + + Sbjct: 462 ASIGIAFYPNDAADMDTLLKNADQAMYKAKAKGRNSVHYF 501 >UniRef50_Q2BJI5 Regulatory component of sensory transduction system n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJI5_9GAMM Length = 872 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 148/347 (42%), Gaps = 11/347 (3%) Query: 1 MSDQIIARVSQSLAKEQSLESLV-RQLLEMLEMVTDMESTYLTKVDVEARLQHIMFA-RN 58 M D+I +R L + LE V ++ ++ E+ ++ ++ E L+ + A Sbjct: 264 MQDKIASREKALLKAREELELRVEQRTNQLQEINFQLQQEIDVRLRAEENLRVLSQAVSQ 323 Query: 59 SQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLP- 117 S I V +A + FS E + D NL LS + Sbjct: 324 SPISIIIAG--VDGGVEYVNQAFTDCSGFSVE-EIKGNDFTFLNNLDSQPELSKELWDAI 380 Query: 118 -DGSFY-GTLCAASSE-KRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 +G + G L +R W + G I Y+ + + + +E +I Q+ Sbjct: 381 NNGQEWRGELANLRKNGQRYWEYTHISPVTDETGQITHYLIIKNDITERKEQEQKIIHQA 440 Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 + DSLT LPNR + L A N + + FIDLD FK +ND GH+ GD LI Sbjct: 441 HFDSLTELPNRSLAMDRLAQGVIKASRNNDVLALMFIDLDGFKNVNDSLGHDIGDQLLIH 500 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYY 293 +RL+ +N + + RLGGDEFL++ D + +I++ +++G +L Sbjct: 501 ASKRLSDSVRNTDTVARLGGDEFLIIMEGLVSRRDCLPVLNKIKESFGAPFNIGSNELKV 560 Query: 294 PGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 S+G+ + D D L AD+AMYQ K+ + T + +H Sbjct: 561 -TPSIGLSLFPDDGQDGDVLLRNADLAMYQAKEAGRNTHHFFNQEMH 606 >UniRef50_Q2Y6N3 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2Y6N3_NITMU Length = 1025 Score = 288 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 70/252 (27%), Positives = 116/252 (46%), Gaps = 10/252 (3%) Query: 90 EVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGL 149 + R+ ++ I + + G YG L A S E ++++ + LQ A + Sbjct: 511 QTETRFKPSSILKSHNIRSCADV-LISGAGGPYGILGAYSPEPQRFTSSSINFLQSLANI 569 Query: 150 IAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIA 209 +A I + L + D LT LPNR + L A ++ + Sbjct: 570 LATAI-------DRKTTEERLTYLAQFDPLTELPNRSLFLDRLRQAMEHAHRNRRRVGVV 622 Query: 210 FIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENAD 268 F DLD FK++ND GH++GD LI V +RL ++ + + RLGGDEF ++ + + D Sbjct: 623 FADLDRFKIVNDTMGHSTGDELLIHVAKRLQQCVRSCDTVARLGGDEFALILSDLVQPED 682 Query: 269 ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHK 328 + + E++ ++ + L ++Y ASLGI + TDADS L AD AM+Q K+ Sbjct: 683 ATLIAEKVISALQVPFELETQEIYV-SASLGISIYPGDGTDADSLLRNADTAMFQAKEQG 741 Query: 329 QKTPFVAHPALH 340 P ++ Sbjct: 742 PAIYQFYLPQMN 753 >UniRef50_Q0A572 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=3 Tax=Gammaproteobacteria RepID=Q0A572_ALHEH Length = 840 Score = 288 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 84/344 (24%), Positives = 143/344 (41%), Gaps = 37/344 (10%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 + + ++L + + R+ L++ E V D + D AR++ + A Sbjct: 258 LKDLRRALEQRDKALAQSRKHLQLAERVIDSSLEGIVITDAHARIEFVNPA--------- 308 Query: 66 ENFTVSWDYSLCKRAIDENCFFSD--EVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 FT YSL + A S P + + A G + G Sbjct: 309 --FTHLTGYSLEEVAGRTPAVLSSGRHPPSFYREMWQALQ-------------EQGYWRG 353 Query: 124 TLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIAQSYTDS 178 + +R+ ++L + A G Y + +RE + +Y D Sbjct: 354 EIW----NRRKSGALYLELLTITAITNDDGDTTHYAGLFTDITHIRENERQIRQLAYYDP 409 Query: 179 LTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGER 238 LT LPNRR + + L+ A ++ + FIDLD+FK +ND GH GD L++V ER Sbjct: 410 LTRLPNRRLLDDRLSLAIKHAHRHRQRLAVMFIDLDHFKQVNDTLGHAVGDELLLRVSER 469 Query: 239 LNTLQQNGEVIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYPGAS 297 L + + + RLGGDEFL + + + D + +R+ + I Y +GD D + G S Sbjct: 470 LREHLREDDTLARLGGDEFLALLPDLQEVDEAIRVTQRLIEAISQPYTIGDHD-FRVGCS 528 Query: 298 LGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 +G+ + D+ + AD AMY+ K + T + P + + Sbjct: 529 IGLSLYPDDGESPDALIRNADGAMYRSKTEGRNTYRLYAPEMDT 572 >UniRef50_C5V3L4 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V3L4_9PROT Length = 900 Score = 288 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 64/229 (27%), Positives = 108/229 (47%), Gaps = 8/229 (3%) Query: 119 GSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 G + G + + E ++ G++ Y+ + + Q + A + ++ D Sbjct: 404 GVWEGEIWNRRKNGEIYPEHLTVTAVKDRNGMVTNYVGVLSDLTQRKAAEEKIENLAFFD 463 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 LT LPNRR + + L + A + FIDLDNFK +ND +GH GDL L QV + Sbjct: 464 PLTKLPNRRLLLDRLKQAMASATRSVTNGAVLFIDLDNFKALNDTYGHPMGDLLLQQVAK 523 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNNEN------ADISSLRERIQQQIRGEYHLGDVDL 291 RL + ++G+ + R GGDEF+V+ + + ++ E+I +R Y +G + Sbjct: 524 RLVSSVRDGDTVSRFGGDEFVVLLEGFDENPLDAASQAETVGEQIFAALRQPYLIGTHE- 582 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 Y+ +S+G + + D + ADIAMYQ KK + P + Sbjct: 583 YHGTSSIGATLFNDKQQSIDELMKQADIAMYQAKKEGRNVLRFFDPQMQ 631 >UniRef50_Q2YCL1 Diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(S) n=2 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2YCL1_NITMU Length = 1054 Score = 288 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 113/234 (48%), Gaps = 9/234 (3%) Query: 116 LPDGSFYGTLCAASSEKRQWS-ERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 L G + G L ++ + E +++ G + Q + A ++ + Sbjct: 560 LSSGEWRGELAQRRRDQSMLNVEAHWTLVRNDDGEPQAIFAINTDITQRKSAENEILHLA 619 Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 DSLTGLPNRR + + L +++ + FIDLDNFKL+ND GH+ GDL L Q Sbjct: 620 LYDSLTGLPNRRLLLDRLGHALAVSARNQRMGALLFIDLDNFKLLNDTLGHDMGDLLLRQ 679 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD-------ISSLRERIQQQIRGEYHLG 287 V RL++ + + + RLGGDEF+V+ + + D IS++ ERI+ ++L Sbjct: 680 VAPRLSSCVRESDTVARLGGDEFVVILMGDFGEDHDEALTQISTICERIRSAFIQPFNLD 739 Query: 288 DVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 +++ S+GI + ++ + L AD+AMYQ K + P + + Sbjct: 740 PY-IHHITPSIGIALFNDQSQTTNELLKRADLAMYQAKASGRNAMRFFDPDMQA 792 >UniRef50_Q47UD6 Sensory box sensor/GGDEF/EAL domain protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47UD6_COLP3 Length = 921 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 106/227 (46%), Gaps = 3/227 (1%) Query: 116 LPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSY 175 G Y L + ++ A Q L + + + + ++A L + Sbjct: 422 TEGGQVYPEL-LDDRRQDEFGLLAYHFNQSKMALDSNNRDLKLQINERKQAEYQLKHLAL 480 Query: 176 TDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQV 235 D LTGLPNR + L +L+ HK + F+DLDNFK+IND GH++GD L QV Sbjct: 481 HDPLTGLPNRLLFQDRLEQAIALSDRHQHKFAVFFMDLDNFKIINDTMGHDAGDELLKQV 540 Query: 236 GERLNTLQQNGEVIGRLGGDEFL-VVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYP 294 RL+ + + + RLGGDEF +++ N D + +R+ ++ + ++ Sbjct: 541 SLRLSCTGRKTDTVARLGGDEFAFIITKVNTIEDAVTFAQRLNSLLKTPIEINGNNINM- 599 Query: 295 GASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 G+S+GI + +++ L ADIAMYQ K + T +++ Sbjct: 600 GSSIGITIYPDDAANSEELLRNADIAMYQAKDDGRNTVRFFTSEMNA 646 >UniRef50_B4B341 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4B341_9CHRO Length = 1342 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 2/207 (0%) Query: 135 WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTT 194 W + ++ G+I ++ + + + + L Q+ D+LTGLPNR + L Sbjct: 866 WEAASISPIKNAEGIITHFVAVKEDITERKAQQTTLTYQANYDALTGLPNRFLAIDRLKQ 925 Query: 195 LFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGG 254 A ++ + FIDLD+FK +ND GH GDL L +V +RL + + + RLGG Sbjct: 926 AILQADRQKKRVAVMFIDLDHFKDVNDTLGHEYGDLLLQKVSQRLKQCLRKSDTVARLGG 985 Query: 255 DEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSA 313 DEFL++ N E + +I + ++L + + AS+GI + D Sbjct: 986 DEFLIILPNLRETHHCKLIASKILSSLEKPFNLL-TEEAFISASIGITLYPDDGNDVSVL 1044 Query: 314 LHAADIAMYQEKKHKQKTPFVAHPALH 340 + AD AMY K+ + ++ Sbjct: 1045 MRNADAAMYLGKRGGRNDFKFYTMGMN 1071 >UniRef50_Q39SC6 Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39SC6_GEOMG Length = 821 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 57/195 (29%), Positives = 94/195 (48%), Gaps = 2/195 (1%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 G ++I+ + + A + +Y DSLTGLPNR + + L+ AR + Sbjct: 360 GKATKFIKVVEDITDRKRAEEKIRRLAYYDSLTGLPNRPLMMDRLSQAIRHARRHGEVVA 419 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA 267 + F+DLD FK +ND GH GD L +V RL+ + + + RLGGDEF++++ A Sbjct: 420 LLFLDLDRFKDVNDSQGHRVGDRLLQEVAARLSGCTRESDTLARLGGDEFVIIAPGVRAA 479 Query: 268 -DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 D S L ++I + + L L+ S+GIV + + + L AD+AMY K Sbjct: 480 TDASLLADKILAALAEPFTLDRQTLHIAT-SIGIVLFPSDGGNGEMLLQRADMAMYAAKD 538 Query: 327 HKQKTPFVAHPALHS 341 + +++ Sbjct: 539 RGGNSYRFFSAEMNT 553 >UniRef50_Q7P0M4 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7P0M4_CHRVO Length = 633 Score = 288 bits (737), Expect = 3e-76, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 112/225 (49%), Gaps = 3/225 (1%) Query: 119 GSFYGTLCAASSEKRQWS-ERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 G + G + + VLQ G I+ ++ + + +E A + + D Sbjct: 144 GQWSGEIWNRRKSGEHFPCWVNISVLQDGQGEISHFVALFTDISERKEQEARVQHMAEYD 203 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 +LT LPNR + + L A ++++ + F+DLD+FK IND GH +GD L +V Sbjct: 204 ALTDLPNRVLVNDRLHQAIRQAELQHNQLAVLFVDLDHFKNINDTLGHCAGDELLKEVAR 263 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGA 296 RL + + +GR GGDEF+++ + N+ + + + ERI + I+ + +G+ L G Sbjct: 264 RLAGAVRGLDTVGRTGGDEFVLILPSINQPGEAAQIAERILRTIQQPFQIGEHSL-VVGC 322 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 S+GI + + +D + L AD+AMY K H + T +++ Sbjct: 323 SIGISLMPDDGSDIQTLLMNADLAMYHAKAHGRNTFRFYTREMNT 367 >UniRef50_Q47IA0 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Dechloromonas aromatica RCB RepID=Q47IA0_DECAR Length = 925 Score = 288 bits (737), Expect = 3e-76, Method: Composition-based stats. Identities = 72/336 (21%), Positives = 135/336 (40%), Gaps = 29/336 (8%) Query: 7 ARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPE 66 Q +++ + E+ ++ ++ MV + + D R+ A Y P+ Sbjct: 331 EGTVQDISERKRTEAHLQ----LMAMVFSNSNEAIIVTDASNRIIATNPAFTCLTGYQPD 386 Query: 67 NFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLC 126 + L F D W T L +G++ G L Sbjct: 387 DVIGKNPRILSAGTTPTEVF-----SDMW------------TCL-----HREGAWQGELW 424 Query: 127 AASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNR 185 + + + +++ G I +I + +L+ + ++ D+LT L NR Sbjct: 425 DRKKNGEAYPKWLSISLVRDEDGQIRNHIGSFIDISELKATQERIRHLAHHDTLTNLANR 484 Query: 186 RAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQN 245 ++ E L + + ++ + IDLD FK IND GH +GD L+QV +RL+ + Sbjct: 485 FSLHEKLAQALAFCKRNRMQLALMLIDLDRFKTINDTLGHQAGDELLVQVAKRLSHAVRE 544 Query: 246 GEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVD 304 +++ RLGGDEF++ AD + L + I ++I Y + +L S+GI Sbjct: 545 SDIVARLGGDEFVIALPGIGSPADAAHLADDITREISAPYLIKGQELR-TSPSIGICVYP 603 Query: 305 PETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + ++ L AD+AMY K + + ++ Sbjct: 604 GDGSEIGDLLKNADVAMYHAKANGRGNYQFFTEDMN 639 >UniRef50_C5S5K8 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S5K8_CHRVI Length = 1069 Score = 288 bits (737), Expect = 3e-76, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 10/227 (4%) Query: 119 GSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIAQ 173 G + G + +R+ E Q+L + G + Y+ + QL+++ A L Sbjct: 582 GHWQGEIW----NRRKSGELYPQILTINTVADSQGRPSHYVGVMTDISQLKQSEARLEHL 637 Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 + D LT LPNRR + L A ++ + F+DLD FK +ND GH SGD+ L Sbjct: 638 VHYDPLTNLPNRRLVQSRLEHALERADRQGGRVAVLFVDLDRFKTVNDSLGHPSGDVLLE 697 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLY 292 + RL+ + + + RLGGDEFLV+ N + D +++ E + ++ +HL + Sbjct: 698 LLARRLSERVREDDTLARLGGDEFLVLLENLQRPEDAAAVAESLLSLLQQPFHLPNGQEL 757 Query: 293 YPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 Y GAS+GI + + AD+AMYQ K+ + T P+L Sbjct: 758 YVGASIGISLYPDDGHTVTDLIQHADVAMYQAKEEGRNTYRFYTPSL 804 >UniRef50_C5V5L2 Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V5L2_9PROT Length = 560 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 58/223 (26%), Positives = 104/223 (46%), Gaps = 3/223 (1%) Query: 119 GSFYGTLCAASSEKRQWSERA-EQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 GS+ G L + E + + ++ G + Y+ + + + + Q+ D Sbjct: 333 GSWCGELWNRRKNGELYVEWSTIKQVRDPHGKLTHYVAAFSDITLRKADEENIRHQAQHD 392 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 +LT LPNR + + L SLA+ + + ++DLD FK +ND GH GDL L +V Sbjct: 393 ALTDLPNRVLLIDRLRQALSLAKRDKMHLALMYLDLDQFKPVNDTLGHAVGDLLLQEVAA 452 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGA 296 R+ + + + + R+GGDEF+V+ ++E+ D ++ E+I+ + + + L Sbjct: 453 RIRSCVREADTVARMGGDEFVVLLTSSEDQRDALTVAEKIRIALEQVFQISGARLQISS- 511 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 SLG+ L ADIAMY K+ + + P + Sbjct: 512 SLGVAVYPEHGASEHELLEHADIAMYYAKQSGRNQVRLYEPEM 554 >UniRef50_B7KEH4 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KEH4_CYAP7 Length = 1027 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 100/207 (48%), Gaps = 2/207 (0%) Query: 135 WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTT 194 W + ++ G+I +I + + + + + L Q+ D+LTGLPNR + L Sbjct: 559 WESASISPIKNEEGVITHFIAIKEDITRRKAQDRILAYQANYDALTGLPNRFLAIDRLKL 618 Query: 195 LFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGG 254 A ++ + FIDLD FK +ND GH GDL L QV ERL + + + RLGG Sbjct: 619 AILQAERQEQRVAVMFIDLDRFKNVNDTLGHEYGDLLLKQVAERLKKCLRKSDTVARLGG 678 Query: 255 DEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSA 313 DEFL++ N + + + ++I + ++L + + + AS+GI + D ++ Sbjct: 679 DEFLIIIPNLKQPSHCKGIAKKILSSLEKPFNLLEEEAFI-SASIGITLYPDDGDDVNAL 737 Query: 314 LHAADIAMYQEKKHKQKTPFVAHPALH 340 + AD AMY K+ + ++ Sbjct: 738 MRNADTAMYLGKRGGRNDFKFYTLGMN 764 >UniRef50_B3E9L8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Geobacter lovleyi SZ RepID=B3E9L8_GEOLS Length = 631 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 60/195 (30%), Positives = 95/195 (48%), Gaps = 2/195 (1%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 G I++ + + + R A + ++ DSLTGLPNR + + L L + A N + Sbjct: 167 GAISRVVLLYTDITERRAAAEEIERLAFFDSLTGLPNRVLLKDRLAQLLTRAGRYNEMVA 226 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA 267 I FIDLD FK +ND GH +GD L V ERL ++ + + RLGGDEF+V+ Sbjct: 227 ILFIDLDRFKEVNDTLGHGTGDQLLQVVSERLTACLRSCDTVARLGGDEFVVLLPGITER 286 Query: 268 D-ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 D + + ++ Q + L +++ G S+GI + + AD AMY K+ Sbjct: 287 DCVGDIAAKLLQSLCKPVQLDAREVFTSG-SIGISLWPIDGDSVSTLFKNADTAMYHAKE 345 Query: 327 HKQKTPFVAHPALHS 341 + T P +H+ Sbjct: 346 QGRNTYRFYTPQMHA 360 >UniRef50_B8GSP1 Putative diguanylate cyclase n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GSP1_THISH Length = 882 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 65/219 (29%), Positives = 106/219 (48%), Gaps = 3/219 (1%) Query: 119 GSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 G + G + + R + + + V++ G I+ +I + + + +EA A + + D Sbjct: 663 GRWEGEIWNRRKDGRVYPQNLSISVVRDGEGRISHHIAIFSDITRRKEAEAQIRHMALHD 722 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 +LTGL NR + + LT AR + + + FIDLD+FK +ND GH +GD L +V + Sbjct: 723 NLTGLANRTLLRDRLTQAIEQARRDRNSLALLFIDLDDFKPVNDTHGHEAGDRVLKEVAQ 782 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYPGA 296 RL + + + R+GGDEF+++ E D + E+I + L GA Sbjct: 783 RLRAAVRRVDTVARMGGDEFVILLQALEQEDMAIQVAEKIIDSLSRPIQLNGQTC-LLGA 841 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVA 335 S+GI D D + AAD A+YQ K + VA Sbjct: 842 SVGIALHPRHGEDHDGLMRAADQALYQAKSAGKNRYQVA 880 >UniRef50_C6AS31 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=6 Tax=Rhizobium RepID=C6AS31_RHILS Length = 781 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 85/335 (25%), Positives = 148/335 (44%), Gaps = 18/335 (5%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY-- 63 A + + +A+ + L ++ L+ M+E + +D E + + N Y Sbjct: 187 QASLLEMIARNEPLPMILEALVLMIEAQLTGIDGSVLLLDSEGTRLYHGASPNLPGGYSR 246 Query: 64 IPENFTVSWDYSLCKRAI--DENCFFSDEVPD-RWGDCIAARN-LGITTFLSTPIHLPDG 119 + + T+ C A + D + D W D A G + STPI Sbjct: 247 LIDGVTIGPKVGSCGTAAWRGQTVIVDDVMSDPLWEDFRALIAPFGFRSCWSTPIATSQN 306 Query: 120 SFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSL 179 + GT S E R+ ++ ++ L + I + + + + ++ D L Sbjct: 307 NVLGTFALYSREVRRPTDHEMTLVALATHIAGIAI-------ERKRVDDRIHFMAHHDDL 359 Query: 180 TGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERL 239 TGLPNR + E L ++ AR N K+ +A+IDLDNFK IND GH +GD L ++ R+ Sbjct: 360 TGLPNRAFLKERLASILDQARRNNRKVTVAYIDLDNFKDINDGRGHAAGDEVLKEIATRM 419 Query: 240 NTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQ---QIRGEYHLGDVDLYYPGA 296 + +++ RLGGDEFLVV ++ + D + R+++ I D ++ Sbjct: 420 ANSVRASDMVVRLGGDEFLVVLVHQSSHDAG-ITRRLRELQKAINRPIRGADGEITITS- 477 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKT 331 S+G+ + ++ L AD AMY+ K+ + T Sbjct: 478 SIGVAAFPFDGATSEELLANADRAMYRAKELGRNT 512 >UniRef50_Q3SIW6 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=2 Tax=Proteobacteria RepID=Q3SIW6_THIDA Length = 1212 Score = 287 bits (734), Expect = 5e-76, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 109/224 (48%), Gaps = 3/224 (1%) Query: 119 GSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 G + G + + + + A V++ G++ Y+ + + + A A + +Y D Sbjct: 728 GYWQGEIIDRRKDGTLYPKWMAVSVVRDADGVLTHYVASFTDITERKLAEAQIKHLAYHD 787 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 LTGL NR ++ L +LAR + + F+DLD FK IND GH GD L++V Sbjct: 788 PLTGLSNRFSLQTQLDQTLALARREQRTLAVVFLDLDRFKSINDSLGHALGDQLLVEVAR 847 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGA 296 RL ++ +++ RLGGDEF+VV + A + + +++ + Y +G L+ A Sbjct: 848 RLRDNVRDSDIVARLGGDEFVVVLTEVGDAAGAARVADKLLGALVPRYRIGGHALH-TTA 906 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 S+GI + DAD+ + AD AMY K + P ++ Sbjct: 907 SIGISLYPHDGDDADALMKNADTAMYHAKSQGRDNVQFFTPEMN 950 >UniRef50_Q1H367 Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Methylobacillus flagellatus KT RepID=Q1H367_METFK Length = 1070 Score = 287 bits (734), Expect = 6e-76, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 103/230 (44%), Gaps = 3/230 (1%) Query: 114 IHLPDGSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIA 172 + G + G L A + + + G + Y+ + Q ++A L Sbjct: 559 LVQQHGKWMGELLAQKRSGEYYPAWVSISTVHDNHGSLQNYVVVLTDISQRKQAEERLQF 618 Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 + D LTGLPNR + E + A+ + + FIDLD FK+IND GH +GD+ L Sbjct: 619 LATHDGLTGLPNRTLLQERMELAVLRAQRYQQCVGVLFIDLDRFKIINDTLGHQAGDVLL 678 Query: 233 IQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDL 291 +V RL + + I R GGDEF+V+ + E + ++ +I + + L +L Sbjct: 679 QEVAGRLGECLRQTDTIARQGGDEFVVLVEDFIEQQYLVNVARKIMHALAQPFILMQQEL 738 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 Y AS+GI + D S L AD+AMY+ K + T ++ Sbjct: 739 YI-SASIGISVYPDDGVDISSLLKNADMAMYRAKDDGKNTFHFYSADGNA 787 >UniRef50_Q39WZ5 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Geobacter RepID=Q39WZ5_GEOMG Length = 739 Score = 286 bits (733), Expect = 6e-76, Method: Composition-based stats. Identities = 53/185 (28%), Positives = 94/185 (50%), Gaps = 2/185 (1%) Query: 158 ALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFK 217 + + + A L ++ D+LTGLPNR + L +LA +++ + F+DLD FK Sbjct: 291 RDITERKHAEEQLYRLAHHDTLTGLPNRILFMDRLQQAKALANRYRYQVAVLFLDLDRFK 350 Query: 218 LINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERI 276 +IND GH GD L QV R+ + + + R+GGDEF ++ +N + D+ + ++I Sbjct: 351 IINDTLGHPVGDHLLQQVAHRIAGCVREVDTVARIGGDEFTIILVNVDTVEDVKRMGQKI 410 Query: 277 QQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAH 336 + + +++ +L+ AS+GI + + D + ADIAMY K + Sbjct: 411 LKTLAAPFNIDTHELFV-TASIGISLFPSDGDNLDQLVKKADIAMYCVKGEGRNNVQFYS 469 Query: 337 PALHS 341 P + + Sbjct: 470 PQMDA 474 >UniRef50_A0L9T5 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Proteobacteria RepID=A0L9T5_MAGSM Length = 1275 Score = 286 bits (733), Expect = 6e-76, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 138/332 (41%), Gaps = 33/332 (9%) Query: 15 KEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDY 74 ++ + + + L + +M+ D + D + + + A + M + V + Sbjct: 700 QDVTRRKMAEEGLVLAKMIFDNAGEAIVITDAQGDITDVNPA-YQRIMGYTRDEIVGQNP 758 Query: 75 SLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQ 134 S+ K + F+ W + L +G + G + ++R+ Sbjct: 759 SILKSGRHDEQFYEQM----WNE-----------------MLSEGHWQGEIW----DRRK 793 Query: 135 WSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIF 189 E + L + A G+I+ ++ + Q +E L +Y D LT LPNR Sbjct: 794 SGEIFPKWLTIDAIRDEQGVISNFVGLFMDITQQKETEEQLEKLAYYDPLTELPNRALFR 853 Query: 190 ENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVI 249 + L L+ + + FIDLD FK +ND GH+ GD LIQV R+ + + + Sbjct: 854 DRLEQEMRLSARGGKSLGLFFIDLDRFKYVNDSLGHDKGDDLLIQVAGRIKHHLRTSDTV 913 Query: 250 GRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETT 308 RLGGDEF V+ E D++ + I + + + L +++ G S+GI + Sbjct: 914 ARLGGDEFTVILPGIEQTNDVARIAGAIVKSLGEVFVLQGHEVFIGG-SIGIAMHPDDGE 972 Query: 309 DADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 D ++ AD AMY+ K+ + T ++ Sbjct: 973 DYETLTKHADTAMYRAKEEGRGTYKFFTSDMN 1004 Score = 61.7 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 74/175 (42%), Gaps = 10/175 (5%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEA-RLQHIMFARNSQK 61 D + + ++ E + ++++LEM + +MES +T VD + +++H++ + + Sbjct: 422 DSLTRMHAITVRTEWDSQRKIQEILEMGGEILEMESAIVTHVDGQMCQVEHLLGQDSLFE 481 Query: 62 MYIPENFTVSWDYSLCKRAIDENCFFS--DEVPDRWGDCIAARNLGITTFLSTPIHLPDG 119 M + S CK+ ID + + G+ +F+ TP++L D Sbjct: 482 M----GQIQPLEQSFCKQVIDAGHAEAIYRIKGSLLEEHPVHTQFGVESFIGTPLYLGD- 536 Query: 120 SFYGTLCAASSEKR--QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIA 172 FYG L S R +S ++ L A + + ++QL + + L Sbjct: 537 RFYGALSYYSKVPRTKGFSFHDRSLISLLAQWVGWEKYRAQQLKQLEQIHQDLEN 591 >UniRef50_Q21SE4 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21SE4_RHOFD Length = 757 Score = 286 bits (733), Expect = 7e-76, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 105/230 (45%), Gaps = 10/230 (4%) Query: 115 HLPDGSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAA 169 G++ G + ++R+ E L + G ++ Y+ + + A Sbjct: 512 ITRGGAWQGEIW----DRRKNGECFPVWLSITVVCGDDGGVSHYVATHTDITLRKAAEDD 567 Query: 170 LIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGD 229 + ++ D LTGLPNRR + + L S AR ++ + F+DLD FK +ND FGH +GD Sbjct: 568 IRQLAFYDPLTGLPNRRLLQDRLHQAMSQARRERGRLALLFLDLDKFKPVNDDFGHQAGD 627 Query: 230 LFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGD 288 L V +RL + + + RLGGDEF+++ + E A D ++ E+I Q + L Sbjct: 628 ELLQAVAQRLQACVRESDTVARLGGDEFVLLLPSIEAAQDAMAVAEKIHQAFGRPFTLSA 687 Query: 289 VDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPA 338 S GI +D + + AD AMYQ K + + PA Sbjct: 688 GRNATMSFSTGIAVYPEHASDEKALMRHADEAMYQAKAAGRDRFVLFAPA 737 >UniRef50_C6WTL1 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WTL1_METML Length = 976 Score = 286 bits (733), Expect = 7e-76, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 105/245 (42%), Gaps = 22/245 (8%) Query: 117 PDGSFYGTLCAASSEKRQWSER---------------AEQVLQLFAGLIAQYIQKEALVE 161 G FY + + E WS ++ G Y+ + Sbjct: 464 QSGEFYRNIYTSLRETGSWSGEIINRRKNGEIYPEHLTITAVKDADGQTTNYVGMFTDIS 523 Query: 162 QLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLIND 221 + A+ + ++ D LT LPNRR + LT + + + F+DLD+FK +ND Sbjct: 524 VAKAASERIENLAFFDPLTNLPNRRLFSDRLTQALVNSTRSGNYGALVFLDLDHFKSLND 583 Query: 222 RFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADI------SSLRER 275 GH+ GD+ L QV RL+ + G+ + RLGGDEF+++ N D+ ++ ++ Sbjct: 584 TLGHDYGDMLLKQVALRLSNCVREGDSVARLGGDEFVLLVENLSANDVEAAHQIEAIGDK 643 Query: 276 IQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVA 335 I + Y L + Y S+GI + ++ L ADIAMYQ KK + T Sbjct: 644 ILMSLNQPYQLQSHE-YLSTPSIGISLFNGHQESSEDLLKHADIAMYQAKKAGRNTLRFF 702 Query: 336 HPALH 340 P + Sbjct: 703 DPLMQ 707 >UniRef50_C6CAQ7 Diguanylate cyclase with PAS/PAC and GAF sensors n=3 Tax=Dickeya RepID=C6CAQ7_DICDC Length = 506 Score = 286 bits (733), Expect = 7e-76, Method: Composition-based stats. Identities = 76/343 (22%), Positives = 135/343 (39%), Gaps = 9/343 (2%) Query: 2 SDQIIARVSQSLAKEQSLESLVRQLL-EMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 D R + L+ L+ ++ ++ + E + VD E + + A + Sbjct: 158 HDNSYNRALELLSSGAPLKDILDAIIFSVEEKNPGRIVCSVLLVDKEKKCLTLGSAPSLP 217 Query: 61 KMYIPENFTVSWDY---SLCKRAIDENCFFSDEVPDR--WGDCI-AARNLGITTFLSTPI 114 Y V S A ++++ W A G+ + S PI Sbjct: 218 GFYKNAMHNVKIADGAASFGTAAYSGKRVIAEDISTHPHWSLYKGLALYAGLRSCWSEPI 277 Query: 115 HLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 + G L + +E ++ A L+A I++ ++ LR + + Sbjct: 278 FGQNKEILGVLSVYHRKVYSPTEDEIASIEKSAQLVAVAIERYRAIDMLRRSEEHYRQLA 337 Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 + DSLT L N E + L++ KI + F+DLD FK IND FGH +GDL L + Sbjct: 338 HYDSLTSLANGLTFAEQMEQAIQLSKQTGRKIALMFLDLDKFKQINDTFGHATGDLLLKE 397 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYY 293 R+ + ++ + + R GDEF+++ E + + ++I + + + L Sbjct: 398 AAVRMRSAVRDTDTVYRRSGDEFIILLQGIKEIENTLYVADKIHHALNEPFFIEGKKLDI 457 Query: 294 PGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAH 336 S+GI TD+ + AD AMYQ K + + H Sbjct: 458 -SCSIGIALYPEHGTDSLTLAINADAAMYQAKALGRSQTQIYH 499 >UniRef50_Q607T2 Sensory box protein/GGDEF domain protein n=2 Tax=cellular organisms RepID=Q607T2_METCA Length = 1346 Score = 286 bits (732), Expect = 9e-76, Method: Composition-based stats. Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 2/226 (0%) Query: 116 LPDGSFYGTLCAASSEKRQWS-ERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 +GS+ G ++ ++ G + YI A + L+EA + + Sbjct: 851 DQEGSWQGEFWNRRKNGELFAVLETIVTVRDETGAMVNYIGVAADISSLKEAEEHIHHLA 910 Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 Y D L+ LPNRR + E +LA ++ + F+D+D+FK +ND GH GD L++ Sbjct: 911 YYDPLSALPNRRYLMERAEYALALAERRKEELAVVFLDVDHFKDVNDSLGHQVGDELLVR 970 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYP 294 V ++ + + + RLGGDEF ++ + +S + ++I +R + Sbjct: 971 VATQIKEFTRETDTVARLGGDEFALLLPDLGRDAVSQVADKILAALRKPFEHSGQTFAVT 1030 Query: 295 GASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 G S+GI + TD ++ L AD AMY K+ + P ++ Sbjct: 1031 G-SIGISLYPHDGTDFETLLRNADTAMYHAKQQGRNQFRFYDPGMN 1075 Score = 41.3 bits (96), Expect = 0.049, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 64/190 (33%), Gaps = 22/190 (11%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 ++A+ +Q + + S + L + + ++ ++ E + AR Sbjct: 485 SLLAQTNQIIVRHTSEQELFDSVCRIAIRNGGFLFAWIGMIENETGDLVPV-ARYGDDAG 543 Query: 64 IPENFTVSWDYS-----LCKRAIDENC------FFSDEVPDRWGDCIAARNLGITTFLST 112 +S + + A+ F +D + W + A G+ + Sbjct: 544 YVGRLHLSRADTAHHHGPTRMAVAAGHHVISDDFLADPLTRPWHEAGLA--AGVRASGAF 601 Query: 113 PIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFA-------GLIAQYIQKEALVEQLRE 165 PI G G + + E+ +SE VL A ++A+ ++E +LRE Sbjct: 602 PIRRF-GKVVGAINLYAGERGFFSEDIVAVLDTMAMDVSFALDILARDAERERSEMRLRE 660 Query: 166 ANAALIAQSY 175 + + Sbjct: 661 SEERFRLAAN 670 >UniRef50_C0ZBT5 Probable signaling protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZBT5_BREBN Length = 815 Score = 286 bits (732), Expect = 9e-76, Method: Composition-based stats. Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 1/193 (0%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 G I + + + + ++A + ++ DSLT LPNR E L A+ + KI Sbjct: 359 GEIVEMVGSMIDITERKKAEETIRYMAHYDSLTNLPNRTLFHEKLAEAMLKAKQKDEKIG 418 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA 267 + FIDLD FK IND GH+ GD+ L V RL + + + RLGGDEF + + Sbjct: 419 VMFIDLDRFKNINDTLGHSIGDVLLQAVANRLICCLRKEDSVSRLGGDEFAIFLTGVTHR 478 Query: 268 DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKH 327 + + +RI + L ++++ S+GI + D ++ L AD AMY K+ Sbjct: 479 EAGEIAQRIITSMSESITLDHIEIFI-TPSIGISMYPDDGDDIEALLKHADAAMYLAKEQ 537 Query: 328 KQKTPFVAHPALH 340 + LH Sbjct: 538 GKNNYQFFSEELH 550 >UniRef50_D0KJW8 Diguanylate cyclase with PAS/PAC and GAF sensors n=5 Tax=Pectobacterium RepID=D0KJW8_PECWW Length = 504 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 74/347 (21%), Positives = 136/347 (39%), Gaps = 10/347 (2%) Query: 2 SDQIIARVSQSLAKEQSLESLVRQLL-EMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 D R + L+ L+ ++ ++ + E + VD + + + A + Sbjct: 158 HDNSYNRALELLSSGAPLKDILDAIIFSVEEKNPGRIVCSVLLVDKDKKCLTLGSAPSLP 217 Query: 61 KMYIPENFTVSWDY---SLCKRAIDENCFFSDEVP--DRWGDCI-AARNLGITTFLSTPI 114 Y V S A ++++ W A G+ + S PI Sbjct: 218 GFYKNAIHNVKIADGVASFGTAAYTGKRVVAEDISVHPHWSLYKGLALYAGLRSCWSEPI 277 Query: 115 HLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 + G L + +E ++ A LI+ I++ ++ LR + + Sbjct: 278 IGQNKEILGVLSVYHRKVYAPTEEEIFSIEKSAQLISIAIERYHAIDMLRRSEEHYRQLA 337 Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 + DSLT L N E + L++ KI + F+DLD FK IND FGH GDL L + Sbjct: 338 HYDSLTSLANGLTFAEQMEQAILLSKQTGRKIALMFLDLDKFKQINDSFGHAVGDLLLKE 397 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYY 293 R+ ++ + + R GDEF+++ + D + ++I + + + L Sbjct: 398 AAARMRGAVRDSDTVYRRSGDEFIILLQGIKEIDNTLYVADKIHNALNKPFEINGKTLDI 457 Query: 294 PGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 S+GI +D+ + AD AMYQ K + + H +++ Sbjct: 458 -SCSIGIALYPEHGSDSLTLAINADSAMYQAKAMGRSQTQIYH-SMN 502 >UniRef50_A1KAZ1 Hypothetical signaling protein n=1 Tax=Azoarcus sp. BH72 RepID=A1KAZ1_AZOSB Length = 952 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 104/227 (45%), Gaps = 10/227 (4%) Query: 119 GSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIAQ 173 G + G L +R+ E + L L A G + Y+ + +L++ L Sbjct: 469 GHWQGELW----NRRKNGELFPEWLTLNAVRNEVGHVTHYVGVFTDISKLKQTEDRLDYL 524 Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 ++ D LT LPNR + L A+ ++ + F+DLD FK +ND GH +GD L Sbjct: 525 AHHDPLTDLPNRLLVLSRLEHALDGAQRRGCRVAVMFLDLDRFKTVNDSLGHAAGDELLR 584 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLY 292 V RL + + +GRLGGDEF+V+ + E AD + + + + + + + L + Sbjct: 585 AVAARLRGALREEDTLGRLGGDEFMVLLEHVEAPADAAVVAKNLVEVLAAPFALSNGHEV 644 Query: 293 YPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 + AS+GI + D + + AD AMY+ K + T L Sbjct: 645 FIRASIGISFYPDDGDDFMTLVRNADAAMYRAKAQGRNTYGFYTEDL 691 >UniRef50_C6X941 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6X941_METSD Length = 738 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 57/188 (30%), Positives = 95/188 (50%), Gaps = 2/188 (1%) Query: 155 QKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLD 214 + + ++A A+ Q+Y D+LT LPNR + LT A+ HK+ I F+DLD Sbjct: 277 GVARDITERKKAEQAITHQAYHDTLTDLPNRMLFKDRLTVAIHHAKRNKHKLAIMFLDLD 336 Query: 215 NFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLR 273 FK +ND GH GD L QV RL + + + R+GGDEF ++ N+ D + + Sbjct: 337 RFKWVNDTLGHLYGDELLKQVAARLRNCMREQDTLARMGGDEFTMLLHELNQPDDATVIA 396 Query: 274 ERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPF 333 ++I +++ + L D +++ S+GI ++ + ADIAMY K + Sbjct: 397 QKIFDELKRPFMLDDREIFISS-SIGIAIYPDHGDSIENLIKRADIAMYHVKWRGKNGFQ 455 Query: 334 VAHPALHS 341 P+++S Sbjct: 456 YYDPSMNS 463 >UniRef50_C6NZF1 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6NZF1_9PROT Length = 995 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 55/194 (28%), Positives = 94/194 (48%), Gaps = 2/194 (1%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 G + + I + + + A + Q+ DSLT LPNRR + L LA+ Sbjct: 539 GRVTRMIGTHTDLSERKLAEETIRRQANYDSLTQLPNRRLFRDRLEQTIRLAKRDQSSFA 598 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NEN 266 + IDLD+FK +ND GH++GD L+ +R+ + + + R+GGDEF+V+ + N+ Sbjct: 599 LMLIDLDHFKEVNDTMGHDAGDFLLVDAAQRIQHCVRESDTVARMGGDEFVVILPDVNDP 658 Query: 267 ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 +I + + I ++ + LG+ + + AS+GI + ++ L AD AMY K Sbjct: 659 DNIERIAQNIITKLAAPFVLGE-EKAFISASIGITLYPSDADSMETLLKNADQAMYVAKH 717 Query: 327 HKQKTPFVAHPALH 340 + P L Sbjct: 718 LGRNRMSYFTPVLQ 731 >UniRef50_D1U882 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U882_9DELT Length = 958 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 70/227 (30%), Positives = 113/227 (49%), Gaps = 11/227 (4%) Query: 119 GSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIAQ 173 GS++G + +R+ E ++L + + G IA Y+ + ++ L Sbjct: 469 GSWHGEIW----NRRKNGESYPEILSISSIRDDDGEIANYVAVFHDISDMKHKEEQLAHH 524 Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 Y D LTGLPNR + + L+ S A K+ + F+DLDNFK IND FGH GD L Sbjct: 525 LYHDGLTGLPNRVLVLDRLSMALSHANRTGTKVAVLFLDLDNFKKINDSFGHAQGDTLLK 584 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLY 292 V ERL L ++ + + R GGDEFLVV ++ E ++ L E +Q+ + + +++ Sbjct: 585 AVAERLVALYRDEDTVARQGGDEFLVVVVDVHEEREVVDLAEGLQRVFEEPFVIKGQEVF 644 Query: 293 YPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 S+G+ + D S + AD+AMYQ K + + F+ + Sbjct: 645 I-TPSIGVTLYPDDGQDPASLVKNADMAMYQSKAKGRNSYFLFTQQM 690 >UniRef50_C6MIL1 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MIL1_9PROT Length = 576 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 61/233 (26%), Positives = 109/233 (46%), Gaps = 11/233 (4%) Query: 118 DGSFYGTLCAASSEKRQWSE--RAEQVLQLF-------AGLIAQYIQKEALVEQLREANA 168 D + + C E+ W+ + +++ F +G I + + A Sbjct: 86 DQEVFESGCQIDFEETMWNSMLKQNRMVHTFKKPICDTSGKPLYLIGMFVDITERHRAEQ 145 Query: 169 ALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSG 228 ++ + D LTGLPNR + + + ++ + FIDLDNFK+IND GH+ G Sbjct: 146 RILEMATYDILTGLPNRALLKDRIERALEHGNRNRQRVALLFIDLDNFKVINDSLGHDVG 205 Query: 229 DLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLG 287 D L V R ++ + + + R GGDEF+V+ N E+A D ++ ++I ++ + + Sbjct: 206 DKLLQAVAARFVSIVRGEDTVARQGGDEFIVLLSNLESAFDAEAVAQKILNALQLHFLID 265 Query: 288 DVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 +L+ G S+GI + D + L +DIAMY KK+ + P ++ Sbjct: 266 GKELHISG-SIGISLFPDDGEDIWTLLRNSDIAMYHAKKNGRNNCEFFKPEMN 317 >UniRef50_C0N5T0 NMT1/THI5 like family n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N5T0_9GAMM Length = 1410 Score = 284 bits (728), Expect = 3e-75, Method: Composition-based stats. Identities = 67/224 (29%), Positives = 107/224 (47%), Gaps = 4/224 (1%) Query: 119 GSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 G + G + + ++E L G Y+ + + Q +E AL ++ D Sbjct: 800 GHWQGEIWNLKKNGQLFAELLTISTLVDERGETLHYLGLFSDITQSKEQQHALELMAHYD 859 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 LT LPNR + + ++ + + + F+DLD FK +NDR+GH+ GD LI+V + Sbjct: 860 MLTQLPNRTLFADRFHQAIAHSKRNHSLLAVVFLDLDGFKPVNDRYGHDVGDQLLIEVAQ 919 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYPGA 296 R+ + + RLGGDEF+++ + + D L RI+ I Y L + + A Sbjct: 920 RIKASIRQDDTASRLGGDEFVLLLNDISSVDHCERLINRIRHAIELPYQLDEDTIS-LSA 978 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 SLGI + DAD+ L AD AMYQ K ++ + ALH Sbjct: 979 SLGITIYPLDDADADTLLRHADQAMYQAKLAGRQRHHIFD-ALH 1021 >UniRef50_Q1JY96 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JY96_DESAC Length = 904 Score = 284 bits (728), Expect = 3e-75, Method: Composition-based stats. Identities = 60/195 (30%), Positives = 102/195 (52%), Gaps = 2/195 (1%) Query: 147 AGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKI 206 AG+ + Y+ + +++ + L Q+Y D+LT LPNR+ + L+ + AR K+ Sbjct: 453 AGIPSHYVAIFHDISEIKRSEEKLQHQAYHDALTNLPNRKLFHDRLSVAVAHARQHKTKL 512 Query: 207 MIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNN-E 265 + ++D+DNFK IND GH+ GD L Q+ ERL + + + RLGGDEF+++ + Sbjct: 513 AVIYLDIDNFKYINDSLGHHYGDKLLQQISERLLSCTRQEDTTARLGGDEFIILMPEIED 572 Query: 266 NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 DI+ L RI +Q+ + L D Y S+G+ + + + ADIAMY+ K Sbjct: 573 PHDITVLCRRILKQLELPHALSGRD-YTVNVSMGVTVFPDDADTPEDLIKNADIAMYRAK 631 Query: 326 KHKQKTPFVAHPALH 340 + + + A+ Sbjct: 632 EAGKNGYQLFTAAMQ 646 >UniRef50_Q3A0D5 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A0D5_PELCD Length = 1141 Score = 284 bits (728), Expect = 3e-75, Method: Composition-based stats. Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 2/191 (1%) Query: 152 QYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFI 211 I + + +EA + ++ D LTGL NR + + + A + + F+ Sbjct: 670 ALIGSLLDITERKEAEKTIEHLAFHDPLTGLANRLLFMDRIEQAIAHAHRHHESFALMFL 729 Query: 212 DLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADIS 270 DLD FK IND GH++GD L +V +RL T + + + R GGDEF V+ + +I Sbjct: 730 DLDRFKTINDSLGHSAGDAALKEVAQRLTTCLRETDTVSRFGGDEFNVLLSGPSHEEEIE 789 Query: 271 SLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQK 330 + +I + + Y + D +++ S+GI + +A + + AD A+Y+ K + Sbjct: 790 LIAHKILKSLAWPYDINDHEVFM-TCSIGIASYPKDGREAITLVKNADTALYRAKDLGRN 848 Query: 331 TPFVAHPALHS 341 ++++ Sbjct: 849 NFQFYSSSMNA 859 >UniRef50_C6XBJ6 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XBJ6_METSD Length = 1150 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 110/230 (47%), Gaps = 11/230 (4%) Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIA 172 G + G + +R+ E + L + G + + + + + + + A+A + Sbjct: 665 SGEWRGEIW----NRRKSGEEYAEWLAINNIYSEDGKLFRRVALFSDITEKKRADALIWN 720 Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 Q+ D LT LPNRR + L ++H + + + FIDLD FK +ND GH+ GD L Sbjct: 721 QANYDLLTQLPNRRLFSDRLQQEIKKSQHDHSQFALLFIDLDRFKEVNDTLGHSHGDYLL 780 Query: 233 IQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISS-LRERIQQQIRGEYHLGDVDL 291 I+ R+ + + +GRLGGDEF V+ N + + + + +R+ + Y L ++ Sbjct: 781 IEASHRIQRHLKETDTVGRLGGDEFTVIIANLPDPSVMTLIAQRVLDALAAPYDLEG-EI 839 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 Y AS+GI + T + L AD AMY+ KK+ + P + + Sbjct: 840 VYLSASIGITVFPEDATTSAELLKNADQAMYEAKKNGRNRFSFFTPMMQA 889 >UniRef50_C6P1Q1 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P1Q1_9PROT Length = 1135 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 106/229 (46%), Gaps = 8/229 (3%) Query: 119 GSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 G++ G + + ER A ++ G++ Y+ + + + A + + ++ D Sbjct: 644 GAWKGEIWNKRKNGEVYPERLAITAVKDARGVVINYVASLSDITLHKAAEDEIRSLAFFD 703 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 LTGLPNRR + + L + + F+DLDNFK +ND GH+ GDL L QV + Sbjct: 704 PLTGLPNRRLLMDRLQQALVASSRSGKAGALLFLDLDNFKNLNDTLGHDIGDLLLQQVAQ 763 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRE------RIQQQIRGEYHLGDVDL 291 RL + G+ + R+GGDEF+V+ + I + + +I + YHL ++ Sbjct: 764 RLKNCVREGDTVARIGGDEFVVMLEDLSAESIEAASQTEAVGWKIISTLNKPYHLEKFEV 823 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + S+G D D ADIAMYQ KK + T P + Sbjct: 824 H-STPSIGATLFDSRPQIIDDLFKQADIAMYQAKKAGRNTMRFFDPQMQ 871 >UniRef50_Q2RPL3 Diguanylate cyclase/phosphodiesterase n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RPL3_RHORT Length = 855 Score = 284 bits (727), Expect = 4e-75, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 103/223 (46%), Gaps = 3/223 (1%) Query: 119 GSFYGTLCAASSEKRQWS-ERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 G + G + E +S E ++ AG Y+ + + + + Q+ D Sbjct: 357 GLWRGEIWGERREGPPYSGEMTVTAVRTRAGETTHYVAAITDITKRKRDEEHIRFQANFD 416 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 LT LPNR I + L A+ ++ + F+DLD FK IND +GH++GD L Sbjct: 417 MLTHLPNRHLIMDRLEQAMHQAQRTGRQVCVMFLDLDRFKQINDSYGHSAGDEVLKLTAR 476 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNNENADISS-LRERIQQQIRGEYHLGDVDLYYPGA 296 RL + + +GRLGGDEF+V+ N E+ + + E+I + + +G +++ Sbjct: 477 RLRNCVRISDSVGRLGGDEFIVILSNVEDQHAGAYIAEKILYSLSEPFPIGGTEVFCI-P 535 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 S+GI A L AD+AMY K+ ++ + P + Sbjct: 536 SVGITYFPDHGETAPDLLRNADVAMYHAKQGGERRYAIFTPDM 578 >UniRef50_C5V2Q6 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V2Q6_9PROT Length = 564 Score = 283 bits (726), Expect = 4e-75, Method: Composition-based stats. Identities = 71/325 (21%), Positives = 134/325 (41%), Gaps = 10/325 (3%) Query: 18 SLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLC 77 L+ + + L + S L + RL ++ N+ + + + + D + Sbjct: 240 PLDERNQDEIGKLARTFNQMSESLYNSEKSMRLASSIYQSNADAIVVTDENNLIVDVNPA 299 Query: 78 KRAIDENCFFSDEVPDRWGDCIAARNLGITTF---LSTPIHLPDGSFYGTLCAASSEKRQ 134 I + DEV + + + I + I G + G + + Sbjct: 300 FTRIT--GYTLDEVRGKNPRLMQSGQHDIQFYRKMWRAII--DQGHWQGEIWDKRRDGGL 355 Query: 135 WS-ERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLT 193 ++ L+ G I +++ + + + + ++ + + Q+ D LT LPNRR + L Sbjct: 356 YAKSVNIIALRHQDGSIYRFVAQFSDITEKKQKDELIHWQANYDPLTNLPNRRLFQDRLN 415 Query: 194 TLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLG 253 LA + + FIDLD FK IND GH +GD+ L++V R+++ + + + RLG Sbjct: 416 QAIKLAHRTELPLALFFIDLDYFKEINDTLGHANGDVLLMEVARRISSCVREADTVARLG 475 Query: 254 GDEFLVVSLN-NENADISSLRERIQQQIRGE-YHLGDVDLYYPGASLGIVEVDPETTDAD 311 GDEF V+ ++ I + + I ++ + + D Y+ AS+GI + D Sbjct: 476 GDEFTVILPELSDATQILRVAKNIVDKLSQPFFFVNDETGYHVSASIGIANYPQDAMDTK 535 Query: 312 SALHAADIAMYQEKKHKQKTPFVAH 336 + AD AMY K + Sbjct: 536 GLIKCADKAMYAAKSEGRNRFVYFS 560 >UniRef50_Q31EA2 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Piscirickettsiaceae RepID=Q31EA2_THICR Length = 1289 Score = 283 bits (726), Expect = 5e-75, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 107/226 (47%), Gaps = 3/226 (1%) Query: 118 DGSFYGTLCAASSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYT 176 +G + G + + + + ++ G+ Y+ + L+E L ++ Sbjct: 797 EGHWSGEIWNRNKNGTVYPQMITITAIKNSDGMTQNYLALFTDITSLKEQQRQLEHIAHY 856 Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 D+LT LPNR + + L ++ N + + FIDLD FK +ND GH++GD L+++ Sbjct: 857 DALTQLPNRSLLADRLQQAIFASQRHNSLLAVLFIDLDGFKKVNDLHGHDAGDELLVELS 916 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPG 295 +R+ + + + + R+GGDEF+VV +N + +D + R+ + + ++ Sbjct: 917 KRMKNILREEDTLARIGGDEFIVVLVNLDAPSDCEMILRRLLESTSESVDIEG-EVVSVS 975 Query: 296 ASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 AS+G+ + DAD + AD AMYQ K+ + + S Sbjct: 976 ASIGVTFYPKDNVDADLLMRHADQAMYQAKQSGKNRYHYFDVQMDS 1021 >UniRef50_Q47ZI3 Sensory box/GGDEF/EAL/CBS domain protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47ZI3_COLP3 Length = 858 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 89/359 (24%), Positives = 156/359 (43%), Gaps = 25/359 (6%) Query: 2 SDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQK 61 Q+I+ + LA +++ L M +++D+E Y+ ++ + + I + + Sbjct: 236 YQQLISHNIRHLAVSDDNGAIIGTL-SMDNIMSDIELAYVEELHQIVQQRDIALRESKKH 294 Query: 62 MYIPENFTVSWDYSLCKRAIDENCFFSDEVP--DRWGDCIAARNLGITT-FLSTPIHLPD 118 + + E + + DE P R A LG+ + LS+ H D Sbjct: 295 LLVAEKIIEASLDGI--MITDEQGTIISVNPAFTRVTGYKEAEVLGLNSKILSSGRHTSD 352 Query: 119 GSFYGTLCAASSEKRQW----------SERAEQVLQLFA-----GLIAQYIQKEALVEQL 163 FY L E+ W SE Q L + + + + + Sbjct: 353 --FYQQLWLCILEQGVWQGEIWNKRKNSEIYPQWLTIIEISEGVDNNKVFAAIFSDISER 410 Query: 164 REANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRF 223 + A + ++ D LT LPNRR F+ + ++A N+K+ + FIDLD FK +ND + Sbjct: 411 KLAEKRIENLAFYDELTQLPNRRLFFDRVDMALAIAHRKNNKMALFFIDLDYFKEVNDNY 470 Query: 224 GHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRG 282 GH GDL L +RL + G+ + R+GGDEF ++ + D I RI +++R Sbjct: 471 GHRIGDLLLRSFAKRLTESSKEGDTVARIGGDEFTLLLTDMREVDHICKACNRIVEKLRQ 530 Query: 283 EYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 YH+ L S+GI + T+ + + ADIAMY+ K + + + PA+++ Sbjct: 531 PYHIEGHALNITT-SIGIAVYPEDGTNEEELMKNADIAMYRAKDIGRNSFQLFTPAMNA 588 >UniRef50_B9LZ98 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Geobacter sp. FRC-32 RepID=B9LZ98_GEOSF Length = 912 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 60/188 (31%), Positives = 94/188 (50%), Gaps = 2/188 (1%) Query: 154 IQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDL 213 + + ++A + +Y D+LTGLPNR + + L A N K+ I F+DL Sbjct: 462 LAIVRDITDRKKAEDEIQQLAYYDTLTGLPNRSLLQDRLGQGIVQAVRDNRKVAIMFLDL 521 Query: 214 DNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSL 272 D FK IND GH +GD L V ERL + + + R+GGDEF+++ E+A D++ + Sbjct: 522 DRFKSINDTLGHVAGDSLLATVAERLTECVRETDTVARIGGDEFVIIISAIEHAEDLNKI 581 Query: 273 RERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTP 332 E+I I L D +++ AS+GI + TD L AD+AMY+ K + Sbjct: 582 AEKILAAISKPLVLNDQEIFI-TASIGIAIYPEDGTDVQGLLKNADLAMYKAKDQGKNAF 640 Query: 333 FVAHPALH 340 ++ Sbjct: 641 QYFSREMN 648 >UniRef50_A0LKD9 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LKD9_SYNFM Length = 844 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 103/240 (42%), Gaps = 13/240 (5%) Query: 106 ITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALV 160 +T G + G + +R+ + L L A I Y+ + Sbjct: 341 YRAMWAT--LSSTGQWQGEIW----NRRKNGDIFPAWLTLCAVRNSEDKITNYVGISRDI 394 Query: 161 EQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLIN 220 +EA L Q+ D+LTGLPNR + LT + A H+ I F+DLD FK+IN Sbjct: 395 TLRKEAEERLSYQASHDALTGLPNRARFHDRLTHALARAGRDRHEFAILFLDLDRFKVIN 454 Query: 221 DRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQ 279 D GH GD L V +RL + + + R GGDEF+++ + A D + RI Sbjct: 455 DTLGHTVGDFLLQGVTKRLLGGTRESDTLARWGGDEFIILLESIRGAEDAAVAARRILDV 514 Query: 280 IRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 + + + +++ G S+GI + D + L ADIAMY+ K + + Sbjct: 515 LAEPFSVQGHEVFVSG-SIGISVYPRDGEDVQALLRCADIAMYRAKDSGKNDYQFYESTM 573 >UniRef50_C0Z6C0 Probable signaling protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z6C0_BREBN Length = 708 Score = 283 bits (724), Expect = 7e-75, Method: Composition-based stats. Identities = 67/336 (19%), Positives = 142/336 (42%), Gaps = 27/336 (8%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 + + + +E +++ E ++ + S ++ ++++ ++ + Sbjct: 139 IRSDITARKQMEDELKRSEEKYRIIAENTSDIISIINLDGEFLYLSPSHKRV-------- 190 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 W++++ I + F V D + I + Y C Sbjct: 191 ---WEHTVPDEEI--HNLFEWIVED---------DRDIFAYAIQHAFSTRKE-YMVECRI 235 Query: 129 SSEKRQ--WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 ++++ W+E + G + + + V +++ + +Y D+LT LPNRR Sbjct: 236 NTQRNDVIWTESKINPIMDEEGNVTKLLLITRDVTDRKQSEETIHHLAYHDALTDLPNRR 295 Query: 187 AIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNG 246 + L+ A+ + + F+DLD FK +ND FGH+ GD+ LI+ +RL + G Sbjct: 296 MYVQQLSKEMMQAKRFQSSLAVLFLDLDRFKDVNDSFGHDVGDMLLIEASKRLQACLKPG 355 Query: 247 EVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDP 305 +V+ RLGGDEF ++ + + + L E+I Q++ + L ++ S+GI Sbjct: 356 DVVARLGGDEFTIMQNQLLDRNEATELAEQIMYQLQRPFELDGH-VFNVSCSIGIALYPQ 414 Query: 306 ETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + + + L AD A+Y K + P++ + Sbjct: 415 DGDNPEDLLKRADTALYTVKSRGKNGYDFFDPSMEA 450 >UniRef50_C6P3H6 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P3H6_9PROT Length = 837 Score = 283 bits (724), Expect = 7e-75, Method: Composition-based stats. Identities = 67/236 (28%), Positives = 121/236 (51%), Gaps = 16/236 (6%) Query: 116 LPDGSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAAL 170 L GS+ G + +KR+ E + L + A G+ +Y+ + + + A + Sbjct: 344 LGSGSWTGEIW----DKRKNGEVYPKWLTITAVKDNEGVTTEYVAIFSDITLRKHAEEEI 399 Query: 171 IAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDL 230 ++ DSLT LPNRR + + + S++ NH + F+D+D FK++ND GH+ GDL Sbjct: 400 YTLAFYDSLTKLPNRRHLLDRINQARSISARSNHYGALLFLDMDRFKILNDTLGHDYGDL 459 Query: 231 FLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN--NENADISS----LRERIQQQIRGEY 284 FL++V R+ ++ + + R+GGDEF+V+ +N ++S+ + E+I+ + Y Sbjct: 460 FLVEVSRRMRNCVRDMDTVARIGGDEFVVLIEEIGTDNEEVSTKVALIAEKIRAALTEPY 519 Query: 285 HLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 L D + ++ S+G+ D+ L AD+AMYQ K+ + PA+ Sbjct: 520 LLKDKE-HHSSPSIGVCLYLGNEESVDTLLRHADLAMYQAKESGRNGVRFFDPAMQ 574 >UniRef50_A4G4R7 Putative uncharacterized protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G4R7_HERAR Length = 859 Score = 283 bits (724), Expect = 7e-75, Method: Composition-based stats. Identities = 58/216 (26%), Positives = 102/216 (47%), Gaps = 6/216 (2%) Query: 131 EKRQWSERAEQVLQL-----FAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNR 185 +R E ++++ G I Y+ E + + A A + + ++ D LTGLPNR Sbjct: 384 NRRHNGEERIDLVRVSPVREADGRITHYLAIEEDITNQKNAQARIESLAHFDVLTGLPNR 443 Query: 186 RAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQN 245 + E LA + + F+DLD+FK IND GHN GD L+++ +RL + + Sbjct: 444 ALLDERAQRALRLAEEDQATLAVMFLDLDHFKNINDTLGHNLGDTLLVELAQRLRAVLRR 503 Query: 246 GEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDP 305 + + RLGGDEF+++ + + + + I Y +G +L AS+GI Sbjct: 504 DDTLSRLGGDEFVLLLPGANRESAKKIAQELMRAINEPYRIGSHELNVM-ASIGIAVYPA 562 Query: 306 ETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + D ++ AD+AMY+ K+ + + + Sbjct: 563 DGMDFETLCKNADVAMYRAKQEGRNAYRSFTQEMQA 598 Score = 61.3 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 63/172 (36%), Gaps = 5/172 (2%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP--E 66 + + + E L ++ ++ E + + D + + + A + YI + Sbjct: 147 MLELITSELPLPDILVNVVRQFEQLIPGSMCSIMLHDKDNKRLRLGAAPSLPTSYITTLD 206 Query: 67 NFTVSWDYSLCKRAIDENCFFSDEVPD--RWGDCIA-ARNLGITTFLSTPIHLPDGSFYG 123 +S D I+ + ++ + WG A+ +GI S PI G Sbjct: 207 CMPLSPDGGCVNAVINGVRTIATDIANDPNWGKFRQQAKEMGIGACCSEPIFSASAQILG 266 Query: 124 TLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSY 175 L E Q SE Q+L+ +A I+++ +R+ + A+ S Sbjct: 267 ALTVYHREPFQPSESDLQLLETATHFLAIAIERKQSEVFMRKLSQAVEQSSN 318 >UniRef50_Q2W4Z4 Predicted signal transduction protein containing a membrane domain n=4 Tax=Magnetospirillum RepID=Q2W4Z4_MAGSA Length = 831 Score = 283 bits (724), Expect = 8e-75, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 99/224 (44%), Gaps = 3/224 (1%) Query: 118 DGSFYGTLCAASSEKRQW-SERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYT 176 DG + G + + + + + + + AG I +I + + EA ++ ++ Sbjct: 341 DGRWQGEIWNRRKDGQVFVAWESIVAVYDEAGAIRYFIGSFRDITEQVEAQRHILRLAHY 400 Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 D LT LPNR + L A + + + F+DLD FK +ND GH +GD L +V Sbjct: 401 DVLTDLPNRVLFQDRLERAVVHALRHDRQAALLFLDLDGFKKVNDTMGHRAGDDLLKEVA 460 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPG 295 RL + + I RLGGDEF V+ A D S + ++I + + D++ G Sbjct: 461 VRLRGCVRMTDTIARLGGDEFTVILDEISAANDASMVADKILASLHAPIFIDGRDVFI-G 519 Query: 296 ASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 S+GI + T D L AD AMYQ K + + Sbjct: 520 TSIGISLFPIDGTSGDELLKHADTAMYQAKAAGKGRFNFYSAEM 563 >UniRef50_C5V4D8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V4D8_9PROT Length = 1138 Score = 283 bits (724), Expect = 8e-75, Method: Composition-based stats. Identities = 76/340 (22%), Positives = 139/340 (40%), Gaps = 24/340 (7%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 + + + + + + L ++ D S + +D++ F N + + Sbjct: 552 GIRTDITERKKSAEAIERSEAKLHILFDSNSDAVLMLDMQG-----FFDCNKAALRL--- 603 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 F + LCK S D + N +++T + F Sbjct: 604 FGCATTEELCKH---HPADMSPATQPNGIDSLTLANE----YIATATRDGNAQFEWLHKR 656 Query: 128 ASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 S + ++ ++L ++ Q + + + +++ + ++ ++ D LTGLPNRR Sbjct: 657 MDSGQSFPADVLLSSMKLDGRVVLQATVR--DITERKKSESEIVRLAFYDPLTGLPNRRL 714 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + + L + + I FIDLDNFK +ND GH GDL L++V +RL + + Sbjct: 715 LMDRLQHALTSNLRNDKHGAILFIDLDNFKSLNDTKGHAVGDLLLVEVAQRLKGCVREED 774 Query: 248 VIGRLGGDEFLVVSLNNEN------ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIV 301 + RLGGDEF+V+ N + A + E+I Q + Y L + Y+ S+G+ Sbjct: 775 TVARLGGDEFVVLLDNLSHGHDNAGAHTKRVAEKILQALNLSYMLQGYE-YHSSPSIGVA 833 Query: 302 EVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + + D L AD AMYQ K + T + Sbjct: 834 LFCADASSPDELLKRADSAMYQSKAAGRNTVRFYDERTQA 873 >UniRef50_Q2BL49 Sensory box/GGDEF domain/EAL domain protein n=2 Tax=cellular organisms RepID=Q2BL49_9GAMM Length = 1014 Score = 282 bits (723), Expect = 9e-75, Method: Composition-based stats. Identities = 57/191 (29%), Positives = 103/191 (53%), Gaps = 2/191 (1%) Query: 151 AQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAF 210 + Y+ + + +L+EA L ++ D+LT LPNR ++ + + + A K + F Sbjct: 567 SSYVAVFSDISELKEAEQKLEKLAHYDNLTSLPNRTLFYDRIESSLARAARNGKKTALLF 626 Query: 211 IDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD-I 269 +D+D FK +ND GH++GD L++ R++ + G+ + RLGGDEF V+ + D + Sbjct: 627 VDIDRFKQVNDNHGHHTGDQLLVEAARRISAHIRLGDTVARLGGDEFTVILSELDGLDPV 686 Query: 270 SSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQ 329 + RIQ+ +R + L D +++ AS+GI + +A+S L AD+AMY K+ + Sbjct: 687 QDIARRIQKSLRDPFRLDDKEIF-SSASIGIAMYPDDGRNAESLLKHADVAMYHVKERGR 745 Query: 330 KTPFVAHPALH 340 A++ Sbjct: 746 NDILFFDKAIN 756 >UniRef50_C7RNA9 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RNA9_9PROT Length = 1399 Score = 282 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 67/341 (19%), Positives = 127/341 (37%), Gaps = 30/341 (8%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 + I+ + + +++ + E+ +R L E + D + R+ + Sbjct: 825 EVILHTLWRDISERRVTETRLRLLAAAFEHSAEAIMVS----DRDNRILEV--------- 871 Query: 63 YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY 122 + + C R R T G + Sbjct: 872 ----------NDAFC-RLTGYAADEVRGSDPRLLSSGRTSAEEYRTMWQA--INSTGHWQ 918 Query: 123 GTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTG 181 G + + + + + ++ G YI + + + A + ++ D+LT Sbjct: 919 GEVWDRRKDGSYYPKWLSISTIRGAEGNTEYYIGSFVDISERKAAEEKISHLAHFDTLTD 978 Query: 182 LPNRRAIFENLTTLFSLARHLNH--KIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERL 239 LPNR + L + AR H + + F+DLD FK IND GH+ GD L++V RL Sbjct: 979 LPNRSNLQGRLDQALASARREGHGRSVAVMFLDLDRFKNINDTLGHHVGDALLLEVAARL 1038 Query: 240 NTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLG 299 + ++ +V+ RLGGDEF+VV + + +I + + Y + L+ S+G Sbjct: 1039 RSSVRDSDVVARLGGDEFVVVLTGADALAAERVAGKILKALSRAYQIEGHALHSTS-SIG 1097 Query: 300 IVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 I + + + AD AMY K + +++ Sbjct: 1098 IAVFPADGESVEVLMQNADAAMYHAKSAGRNNVQFFTASMN 1138 >UniRef50_C7R8B2 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R8B2_KANKD Length = 427 Score = 282 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 2/190 (1%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 G + + + + + + Q++ D+LT LPNR + L LA + ++ Sbjct: 239 GKVTSTVGIARDITERKFIEQQVEHQAHYDTLTDLPNRSLFSDRLEQAIRLAHRQHEQLA 298 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA 267 + F+DLD FK +ND +GH GD+ L QV +R+ + + +GR+GGDEFLV+ + E+ Sbjct: 299 LLFLDLDKFKPVNDNYGHAIGDILLQQVAQRMKDCLRESDTVGRIGGDEFLVLLPHVESV 358 Query: 268 D-ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 D + + E++ Q I + + +D+ S+GI + AD AMY+ K Sbjct: 359 DSATHIAEKLLQAISSPFRINRIDIEI-SCSIGIALYPTHGNTVLELIQVADQAMYKAKN 417 Query: 327 HKQKTPFVAH 336 K FVA Sbjct: 418 QKGNLVFVAD 427 >UniRef50_C4L987 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L987_TOLAT Length = 1098 Score = 282 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 73/239 (30%), Positives = 108/239 (45%), Gaps = 16/239 (6%) Query: 117 PDGSFYGTLCAASSEKRQWS------ERAEQVLQLFA---------GLIAQYIQKEALVE 161 DG FY + A E W + ++L + G I YI + Sbjct: 581 HDGHFYQQMLQALDEHGFWRGEMWNRRQNGELLPMMTSINPVCDSNGEILYYISIYTDIS 640 Query: 162 QLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLIND 221 QL+++ A L + D LTGLPNR + + L + A + ++ + +DLD+FK +ND Sbjct: 641 QLKDSEARLEHMALHDPLTGLPNRAMLGQKLDSALQHAMLNSTRVALLMLDLDHFKNVND 700 Query: 222 RFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQI 280 FGH+ GD L QV RL + +V+ RLGGDEF V+ NN D+S L ERI + Sbjct: 701 SFGHHFGDELLHQVSARLKQQLRESDVVCRLGGDEFTVLLQNNPSPDDVSLLAERIIHAL 760 Query: 281 RGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 + L + G S+GI + A+ + AD AMY+ K + L Sbjct: 761 HQPFLLSNAREVMIGTSIGISLYPEHGSTAEELMQQADTAMYRAKHDGRDGYRYFSEEL 819 >UniRef50_B5VXY3 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Arthrospira RepID=B5VXY3_SPIMA Length = 1092 Score = 282 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 2/207 (0%) Query: 135 WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTT 194 W + ++ G I +I + + Q + L Q+ D+LT LPNR IF+ L Sbjct: 627 WEHASICPMRDEEGYITHFIAVKEDITQQKHNEEILAHQANYDALTDLPNRTLIFDRLRQ 686 Query: 195 LFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGG 254 + A+ + + + FIDLD+FK IND GH GD L + G RL + + +GRLGG Sbjct: 687 AITEAQVHHSNVAVMFIDLDHFKNINDTLGHELGDFLLKEAGMRLRGCIRKTDTVGRLGG 746 Query: 255 DEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSA 313 DEFL++ ++ + ++ + ++L + + AS+GI + + + Sbjct: 747 DEFLLIIPKLDDLVQAEYIANQVLDVLGEPFNLCGEEAFI-SASIGIASYPQDGKNVSTL 805 Query: 314 LHAADIAMYQEKKHKQKTPFVAHPALH 340 + AD AMY K+ + ++ Sbjct: 806 VRNADTAMYAAKQEGRNVFAFFTQNMN 832 >UniRef50_A0L2H7 Diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(S) n=12 Tax=Bacteria RepID=A0L2H7_SHESA Length = 1228 Score = 282 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 112/224 (50%), Gaps = 2/224 (0%) Query: 119 GSFYGTLCAASSEKRQWSERAE-QVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 G + G + E + + +++ G I+ YI + + + + ++ D Sbjct: 747 GFWQGEVWDRHKEGFDFPKWLMMSIVRDETGAISHYIGSFTDISERKVNEERIHFLAHHD 806 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 SLT LPNR ++ L +F A +I + FID+D+FK IND GH+ GD+ L++V Sbjct: 807 SLTLLPNRLSLQSRLEKVFQEAFISQTQIAVMFIDMDHFKNINDTLGHHVGDMLLLEVAR 866 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGAS 297 RL + N +++ RLGGDEF+VV + ++ ++ + E ++ + Y + + L+ S Sbjct: 867 RLKNIMGNDDIVARLGGDEFVVVLSDTDHDRVAKVAEALRSGLNQTYLIDNKPLH-SSPS 925 Query: 298 LGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 +GI + ++ + AD+AMY+ K + A+++ Sbjct: 926 IGISLFPTDGDSVEALMKNADMAMYRAKAAGRNNYQFFTAAMNT 969 >UniRef50_Q88QU8 Sensory box protein n=22 Tax=Gammaproteobacteria RepID=Q88QU8_PSEPK Length = 1247 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 110/232 (47%), Gaps = 11/232 (4%) Query: 116 LPDGSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAAL 170 +G + G + KR+ E L + A I ++ A + ++ A A L Sbjct: 748 TAEGHWQGEI----YNKRKNGELYPSWLTISAVRNSDREITHFVAVFADISSIKHAQAKL 803 Query: 171 IAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDL 230 Q++ D LTGLPNR L + + A+ N + + F+DLD FK IND GH GDL Sbjct: 804 DYQAHHDPLTGLPNRTLFENRLQGVLTCAQVSNRQGAVLFLDLDRFKHINDSLGHPVGDL 863 Query: 231 FLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDV 289 L + +RL ++ + + RLGGDEF+++ ++ +D S++ ++ + G+ Sbjct: 864 LLKGIAQRLKEQVRDVDTVARLGGDEFIILLPGLHKPSDASTIANKLLACFNAPFQAGEH 923 Query: 290 DLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + ++ AS+GI + TD + + AD AMY+ K + L + Sbjct: 924 E-FFTSASIGISLYPQDGTDVSTLIRNADAAMYRSKAKGRNRVEAYTRDLTA 974 >UniRef50_C6WUG6 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WUG6_METML Length = 836 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 109/229 (47%), Gaps = 8/229 (3%) Query: 119 GSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 G++ G + + ER ++ G + Y+ + + + ++ + ++ D Sbjct: 352 GTWCGEIWNRRKNGDIYPERITISEVKDKDGKVTNYVSVFTDISESKASSEQIEHLAFYD 411 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 LT LPNR + + + FS + K + F+DLD+FK++ND GH++GDL L E Sbjct: 412 PLTNLPNRLLLLDRVRQAFSSSSRTGKKGALLFVDLDHFKVLNDTLGHSTGDLLLKLQAE 471 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNNEN--ADISSLRE----RIQQQIRGEYHLGDVDL 291 RL+ + G+ + R GGDEF+VV + + + +++ E +I + G Sbjct: 472 RLSHCVRAGDTVARFGGDEFVVVLEDLDRNATEAAAIAEQIGNKILSTLHEPCQFGTHQ- 530 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 Y +S+GI + + + L ADI+MYQ KK + T PA+ Sbjct: 531 YQSTSSIGITLFSGDEHEIEDLLKQADISMYQAKKAGRNTLRFFDPAMQ 579 >UniRef50_Q47BF2 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Dechloromonas aromatica RCB RepID=Q47BF2_DECAR Length = 1038 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 66/235 (28%), Positives = 111/235 (47%), Gaps = 16/235 (6%) Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIA 172 +G + G + +R+ E + L + A G I ++ + + +EA + Sbjct: 546 NGLWRGEIW----NRRKNGEIYPEWLTISAVRGQHGEITHFVSSFLDITKRKEAEEQIQF 601 Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 + D LT LPNRR + E L+ + + + FIDLDNFK+IND GH+ GDL L Sbjct: 602 LALYDPLTHLPNRRLLNERLSKALTSSGRQRRHAALLFIDLDNFKMINDSMGHDIGDLLL 661 Query: 233 IQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN------ADISSLRERIQQQIRGEYHL 286 QV RL ++ + + RLGGDEF+++ I + +++ + Y Sbjct: 662 RQVALRLRESVRSNDTVSRLGGDEFVILLEELSPNIHDATTQIEHIAQKMLDSLVQPYKF 721 Query: 287 GDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 G+ ++ AS+G + T +S L +AD+AMY+ K + F PA+ + Sbjct: 722 GEFS-HHCTASIGAIPFMDATETIESLLKSADMAMYKAKAAGKNRLFFFDPAMQT 775 >UniRef50_Q0AAU4 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0AAU4_ALHEH Length = 723 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 73/341 (21%), Positives = 132/341 (38%), Gaps = 21/341 (6%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 + + R S + + + +++ + + D ++ +D E R I + Sbjct: 132 ENTLERRRLS-RQNEQIRHRLKRSERLYRFIVDNSPDFIYVLDAEGRFTFINRSAERLLG 190 Query: 63 YIPENFTVSWDYSLCK---RAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDG 119 P+ L RA+ E F R + + P D Sbjct: 191 MTPDTLLGEHFQCLIADEDRAVAERRFNERRTGQRATHNLELQLAPPGA-AGQPTRTVD- 248 Query: 120 SFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSL 179 L A + Q L + V + A + + Q++ D L Sbjct: 249 -----LTAMGIYADGDAPHPGQFLGTY--------GIARDVTDRKHAESIVHYQAHHDLL 295 Query: 180 TGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERL 239 TGLPNR + + L + AR N ++ + F+DLD FK++ND GH+ GD L QV +RL Sbjct: 296 TGLPNRALLKDRLAQALARARRGNEEVAVLFLDLDRFKVVNDSLGHSVGDQLLQQVAQRL 355 Query: 240 NTLQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASL 298 + G+ + RLGGDEF ++ + + + ++ + + + + L+ G S+ Sbjct: 356 RACLREGDTLARLGGDEFTLLLPAIPDRPAVERVAQKCIDALEQPFMVHNHRLF-LGVSI 414 Query: 299 GIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 GI ++ + AD+AMY K+H + A+ Sbjct: 415 GIALFPEHGETLETLIKHADVAMYHVKEHGKGHYTFFDQAM 455 >UniRef50_C7RMB6 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RMB6_9PROT Length = 922 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 83/360 (23%), Positives = 148/360 (41%), Gaps = 37/360 (10%) Query: 1 MSDQIIARVSQSLAKEQSL-ESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNS 59 +++Q+ RV + A+ +S + L R++ E ++ + D + + Sbjct: 316 LNEQLEQRVLERTARLESANQELNREIAERSRAEAELRIAAIAF-DSQEGMMVTDAHGVI 374 Query: 60 QKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDG 119 + + F YS + + D D + G Sbjct: 375 --LRVNRAFVEETGYSAEDVVGRKRTMLTSGREDAALDDAMWET--VQRC---------G 421 Query: 120 SFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIAQS 174 ++ G + ++R+ E L + A GL+ Y+ + Q + L + Sbjct: 422 AWQGEVW----DRRKNGEVYPVWLTISAVKGQGGLVTHYVATHIDITQRKAVEDQLHKLA 477 Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 + D LT LPNRR + + L + + + ++ I FIDLDNFK +ND GH+ GD L + Sbjct: 478 FYDPLTQLPNRRLLLDRLGHVLAGSTRSRNQGAIMFIDLDNFKALNDTQGHDVGDRLLAE 537 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN-----ADISSLRERIQQQIRGEYHLG-D 288 V +RL + + + + RLGGDEF+V+ + A + ++ +I + Y L D Sbjct: 538 VAQRLKSSVRQCDTVARLGGDEFVVMVQDLAADSMVVAQVEAVAGKILAALDCPYRLVFD 597 Query: 289 VDL-------YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 +L Y+ AS+GI +T+ D L AD+AMYQ K + P + + Sbjct: 598 AELGRRNALNYHCTASIGITLFGAHSTNVDELLKQADLAMYQAKDSGRNAIRFFDPEMQA 657 >UniRef50_Q2SFI2 FOG: EAL domain n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SFI2_HAHCH Length = 913 Score = 282 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 70/239 (29%), Positives = 111/239 (46%), Gaps = 17/239 (7%) Query: 117 PDGSFYGTLCAASSEKRQWSERAEQ---------------VLQLFAGLIAQYIQKEALVE 161 D +FY +L + +E W E V+ G +A Y+ + + Sbjct: 395 HDKTFYRSLWRSITEHGHWQGEIENKRRNGEIYPAWQNINVVYDKNGNVANYVSVFSDIS 454 Query: 162 QLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLIND 221 ++E L + DSLTGLPNR F +L AR ++ + FIDLD FK+IND Sbjct: 455 VIKEKEKQLRHLANHDSLTGLPNRLLFFNSLENSLERARRRRMEVALMFIDLDRFKIIND 514 Query: 222 RFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLV-VSLNNENADISSLRERIQQQI 280 GH +GD+ L V RL + +++ RLGGDEF + + + D ++ ++ + I Sbjct: 515 TMGHEAGDILLKTVARRLLEAVRGEDMVARLGGDEFTISLEELSNTEDAAAKAGKLIETI 574 Query: 281 RGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 R H+G ++ AS+GI + +A + AAD AMY+ K+ + T L Sbjct: 575 RQPVHIGGHEI-VCSASIGIAIFPHDADNAQNLARAADAAMYRAKELHRNTFEFYTSEL 632 >UniRef50_Q1JVN0 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JVN0_DESAC Length = 635 Score = 282 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 70/314 (22%), Positives = 125/314 (39%), Gaps = 20/314 (6%) Query: 36 MESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRW 95 + + +V ++ + N+ + + RA E + D Sbjct: 69 LRQALVKQVKLQEHYLDLF--ENASDLIQS--VRLDGSILYVNRAWKETLGYLD------ 118 Query: 96 GDCIAARNLGITTFLSTPI------HLPDGSFYG--TLCAASSEKRQWSERAEQVLQLFA 147 D + + + PI L DG+ G + + R L+ Sbjct: 119 HDIPSLNIFDVISSADRPICRNRVISLLDGAELGPIEVTFQCKDGRAVLLEGNISLRQDE 178 Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 G + + ++A + +Y D+LTGLPNR + + L + AR +H + Sbjct: 179 GQPHSVRGIFRNISERKQAEQKIHQLAYYDTLTGLPNRVLLQDRLIHAIADARRFSHYLA 238 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NEN 266 + FIDLD FK +ND GH+ GDL L RL + ++ + RLGGDEF+V+ + Sbjct: 239 VMFIDLDQFKKVNDTLGHSVGDLLLKDAARRLRSCLRDNDTAARLGGDEFVVILSGFKQI 298 Query: 267 ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 +++ + ++ + Y L + +L ASLGI + +A+ + AD+AMY K Sbjct: 299 SNLPHIARKVLDVLSQPYFLAEREL-VVSASLGISVYPQDGDNAELLMRNADMAMYAAKY 357 Query: 327 HKQKTPFVAHPALH 340 ++ Sbjct: 358 DHGNGYCFFSEEMN 371 >UniRef50_Q5P4Q9 Putative uncharacterized protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P4Q9_AZOSE Length = 813 Score = 282 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 99/224 (44%), Gaps = 4/224 (1%) Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 G G C R + + I +I + + + A A + +Y D Sbjct: 330 SGETTGVRCGGQRYPRTLMINGVRDPE--TREITHFIAIFSDITARKRAEADIQHLAYHD 387 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 +LTGL NR ++ L + AR ++ + F+DLD FK IND GH GD L QV Sbjct: 388 TLTGLANRFSLTARLQLSVAEARRNGQRLAVMFLDLDRFKHINDSLGHPVGDELLKQVAR 447 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGA 296 RL + + + RLGGDEF+VV A D++ + ++ Q+ Y + +L+ A Sbjct: 448 RLRDAVRETDTVARLGGDEFVVVLQGIGGAHDVTHVAAKLLAQLSAPYCVDTTELH-TTA 506 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 S+GI ++ D + + AD AMY K + ++ Sbjct: 507 SIGISLFPDDSADPAALMRNADTAMYHAKAAGRAKFQFYTDEMN 550 >UniRef50_UPI0001699903 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699903 Length = 592 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 54/181 (29%), Positives = 98/181 (54%), Gaps = 2/181 (1%) Query: 161 EQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLIN 220 + +E+ + Q+ D+LTGLPNR + + LT + A ++ + F+DLD FK++N Sbjct: 276 TRRKESEQQIRFQANYDALTGLPNRSLLLDRLTHAINSAEREAWELALLFVDLDQFKIVN 335 Query: 221 DRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQ 279 D FGH GD L ERL + + + + R GGDEF+++ + A D + + +++ ++ Sbjct: 336 DTFGHVMGDELLQHAAERLKSCVRESDTVARFGGDEFIILLQDISGADDAAQIADKVIEK 395 Query: 280 IRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 + + L ++ GAS+GI + +D+D+ L AD+AMY+ K+ + A+ Sbjct: 396 LSRYFLLAGREV-IIGASIGITLFPDDASDSDTLLRNADMAMYRAKETSRNRYQFFTTAM 454 Query: 340 H 340 Sbjct: 455 Q 455 >UniRef50_C5CF99 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CF99_KOSOT Length = 607 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 79/317 (24%), Positives = 141/317 (44%), Gaps = 14/317 (4%) Query: 24 RQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDE 83 R + +E+V E+ L D + + + + F L + D Sbjct: 280 RLVEHAVEVVPGAEAGSLLMKDETGVFRLVAAVGYNLEKLKKIFFK---PEELAQGNTDN 336 Query: 84 NCFFSDEVP-DRWGDCIAARNLG-------ITTFLSTPIHLPDGSFYGTLCAAS-SEKRQ 134 +D V D+ D L I T LS P+ + +G C S S Sbjct: 337 VLIVTDLVSIDKNLDAERLEILKKYGRIDEIKTMLSIPVKI-NGEPVAYFCLDSFSSSNA 395 Query: 135 WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTT 194 + E + ++ ++ + +A +++ L E+LR L S D LT LPNRR E Sbjct: 396 FDEDSIEMAKILSQQVAVILKRIKLEEELRRQKKQLKFMSEHDPLTDLPNRRLFAERAKQ 455 Query: 195 LFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGG 254 +LA+ + I ++DL++FK +ND FGH+ GDL L ++ +R + + G+++ RLGG Sbjct: 456 YIALAKRRKSPLSILYLDLNHFKEVNDSFGHDVGDLVLKKITKRFKSCLREGDLVARLGG 515 Query: 255 DEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSAL 314 DEF+ + + + + + +RI + I ++ + G S+G+ + + D L Sbjct: 516 DEFVFALPDTDAENAAKVAKRIIEVIEKPINIKGKSVKISG-SIGVAVFPDDGENIDQLL 574 Query: 315 HAADIAMYQEKKHKQKT 331 AD+ MY++K+ K Sbjct: 575 KHADMNMYRDKRLKCNN 591 >UniRef50_C6NZD9 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6NZD9_9PROT Length = 1149 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 58/255 (22%), Positives = 109/255 (42%), Gaps = 3/255 (1%) Query: 89 DEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY-GTLCAASSEKRQWSER-AEQVLQLF 146 DEV + + + T+ HL G + G L + ++ E + Sbjct: 636 DEVLGKNPRFMQSGKTPKATYEDMWAHLTRGEPWKGELFNRRKDGTEYIESVLISPVSQV 695 Query: 147 AGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKI 206 G + Y+ + + + R + + D LTGLPNR + E SLA+ ++ Sbjct: 696 DGRVMNYLAIKEDITEKRLTEERIEKLEHFDHLTGLPNRTQLNERFKYALSLAQRSGEQM 755 Query: 207 MIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN 266 + F+DLD+FK IND GH+ GD L+ V +RL ++ + + R GGDEF+++ + Sbjct: 756 TVMFLDLDHFKDINDTLGHSIGDQLLMDVAKRLKETLRDEDTVSRQGGDEFILILPGTDE 815 Query: 267 ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 + + ++ + + + +L S+GI + + ++ AD AMY+ K Sbjct: 816 NGAAHVAAKLMEAVSQAFQFEQHEL-VATCSIGIAIYPHDGENFETLSKNADTAMYRVKH 874 Query: 327 HKQKTPFVAHPALHS 341 + + + Sbjct: 875 DGRNGFCFFTSEMQA 889 Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 3/90 (3%) Query: 86 FFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQL 145 F +D V W + A G S P+H G GTL + EK + E A +L Sbjct: 516 FANDPVTAVWHERAA--EYGWGASASIPLHCH-GIVVGTLTLYAEEKNAFDEPARNLLLE 572 Query: 146 FAGLIAQYIQKEALVEQLREANAALIAQSY 175 A I+ +++ + ++ + L+ S Sbjct: 573 MAMDISFALERFDAETERKKMSETLLKLSL 602 >UniRef50_C6MET2 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MET2_9PROT Length = 753 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 3/226 (1%) Query: 117 PDGSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSY 175 G + G + R++ + G I Y+ + + ++++ + Q+ Sbjct: 268 QSGHWQGEVWNRHKYGREYPAWLNISSVLSKKGSICYYLINFSNITDKKKSDEIIWRQAN 327 Query: 176 TDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQV 235 DSLTGLPNR ++ L+ A + + FIDLD FK +ND FGH+ GD L++ Sbjct: 328 YDSLTGLPNRNMFYDRLSHDIKNAARTGMLLAVLFIDLDRFKEVNDSFGHSVGDALLVEA 387 Query: 236 GERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYP 294 +RLN + + + RLGGDEF ++ N+ + + I ++ +HL + L Y Sbjct: 388 AKRLNGCVRETDTVARLGGDEFTIILNGINDQHCAERIIQMILLELTKPFHL-NAKLAYV 446 Query: 295 GASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 AS+G+ + A+ + AD AMY K + + + Sbjct: 447 TASIGVTFFPADAGSAEILMKNADQAMYAAKNNGRNCCSYFTSNMR 492 Score = 66.3 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 64/166 (38%), Gaps = 6/166 (3%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 Q + + + + + ++ ++E + D + +D + + ++ A + Sbjct: 35 QFQQEILELIVLGNDYKEICEKICLLIEQLLDNAVASVMLLDRDKQCMNVFAAPSIPAEC 94 Query: 64 IP--ENFTVSWDYSLCKRAI--DENCFFSDEVPD-RWGDCI-AARNLGITTFLSTPIHLP 117 I + C A+ E + + D RW A + I + S P+ Sbjct: 95 IAQLNGLRPGPEAGSCGNAVFRQEAVYIESTIDDPRWQSIRKIAIDFNILSCWSIPVRSK 154 Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQL 163 G G+ +S E R S ++L++ + +I ++++ + EQL Sbjct: 155 GGECIGSFALSSFEHRLPSAFHRKLLKIGSFIIGIALEQQKINEQL 200 >UniRef50_A8H6Y6 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=13 Tax=Proteobacteria RepID=A8H6Y6_SHEPA Length = 1064 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 107/229 (46%), Gaps = 11/229 (4%) Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIA 172 +G + G + +R+ E L L A +++ + + + ++A + Sbjct: 524 EGRWQGEVWL----RRKNGEEFVVWLTLNALFDAEAQTQRHVALFSDITEKKQAEKIIWK 579 Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 Q+ D+LTGLPNRR + + L + + F+DLD FK +ND GH+ GD+ L Sbjct: 580 QANYDTLTGLPNRRMLLDYLNAEILKSDSREQHFALMFLDLDYFKEVNDTLGHDMGDMLL 639 Query: 233 IQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDL 291 + +RL ++ +V+ RLGGDEF +V + + + + I +I Y+LG+ + Sbjct: 640 SEAAKRLKACIRDSDVVARLGGDEFTIVLSGVTDIKGVDKVAKHILTRIAEPYNLGE-ET 698 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 Y AS+GI + + + L AD AMY K + P++ Sbjct: 699 AYISASIGITLYPDDASTIEGLLKHADQAMYAAKDEGRNRFHYFTPSMQ 747 >UniRef50_D2UAD2 Hypothetical c-di-gmp phosphodiesterase or signal transduction protein n=1 Tax=Xanthomonas albilineans RepID=D2UAD2_XANAL Length = 864 Score = 280 bits (718), Expect = 4e-74, Method: Composition-based stats. Identities = 74/346 (21%), Positives = 142/346 (41%), Gaps = 15/346 (4%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 M + + V ++ +EQ L + + E + T + VD + L H++ A + Sbjct: 262 MHEVLHKNVLDAMVREQPLVDVATLICREFERIAPQLLTSIFSVDSNSNL-HLLVAPSMP 320 Query: 61 KMYIP--ENFTVSWDYSLCKRAI--DENCFFSDEVPDR-WGDCI-AARNLGITTFLSTPI 114 ++ N + + AI + D D + D L + T ++TPI Sbjct: 321 ELLRQKVGNVPIGPNVGASGSAIWRGKQVMVKDAQRDELFADYRSLTEELHLGTCVATPI 380 Query: 115 HLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 G G+ E + ++++L L A +++E + + + Sbjct: 381 KSSGGRVLGSFALYYREVCEPLPWHMRLIELCVHLCALAMERE-------QTKERVHQLA 433 Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 + D+LT LPNR + A + + I F+D+D FK +N+ GH++GD L Sbjct: 434 FYDALTNLPNRVMFSARAEQALADAEYHGSPVAILFVDIDRFKRVNETQGHHAGDGLLRD 493 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYP 294 + +RL +++ R GDEF+++ + ER+ + +G V L+ P Sbjct: 494 IAQRLTEEMGVTDLLSRQSGDEFVMMLPQCGAEQAAGTAERLLLALAEPVVVGHVTLH-P 552 Query: 295 GASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 AS+G+ + D ++ L AD+AMY+ K + ++ Sbjct: 553 SASIGVAMFPEDGDDIETLLRHADLAMYRAKDEGGGSFRYFSSDMN 598 >UniRef50_A4TX60 PAS:GGDEF n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TX60_9PROT Length = 961 Score = 280 bits (718), Expect = 4e-74, Method: Composition-based stats. Identities = 74/334 (22%), Positives = 135/334 (40%), Gaps = 30/334 (8%) Query: 15 KEQSLESLVRQLLE---MLEMVTDM--ESTYLTKVDVEARLQHIMFARNSQKMYIPENFT 69 K QSL + +L E + D ++ ++ + D + +M + + MY + Sbjct: 391 KTQSLTLALDELAESEGRFRTIFDHVNDAIFIHRADTG---RLLMVNQRMRDMYGMGDLP 447 Query: 70 VS-WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 V D +C + +V R + DGS + Sbjct: 448 VDRIDVGMCSAGVSPYGAAEAQVWLRAAAAGQPQQFDWHA------RRLDGSLF------ 495 Query: 129 SSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAI 188 W E + ++ + G + + + + + A L ++ D LT LPNR + Sbjct: 496 ------WVEVSMRLARFSDGQ-NRLLVVVRDITERKNAQDRLEFMAHHDPLTELPNRLLL 548 Query: 189 FENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEV 248 + + +LA ++ + F+DLD FK +ND GH +GD L V RL + + Sbjct: 549 QDRVDRAIALAEREGRRVALMFLDLDQFKTVNDSLGHAAGDRLLKDVAWRLRQCVRESDT 608 Query: 249 IGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPET 307 I RLGGDEF++V +AD + + E+I + + + ++ S+GI + Sbjct: 609 IARLGGDEFVIVLNAVRDADGVVEVAEKIHKSVAPPITIEGQEV-TSTLSMGIAMFPEDG 667 Query: 308 TDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 D D+ + AD AMY K+ + T +++ Sbjct: 668 HDFDTLMKKADAAMYHAKESGRSTYRFFAARMNA 701 >UniRef50_Q21SZ9 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=3 Tax=Proteobacteria RepID=Q21SZ9_RHOFD Length = 1169 Score = 280 bits (717), Expect = 5e-74, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 109/234 (46%), Gaps = 16/234 (6%) Query: 119 GSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIAQ 173 GS+ G + +R+ E ++L + A G++ Y+ + + + A + Sbjct: 683 GSWQGEIW----NRRKNGEAYPELLSITAVKENGGIVTHYVGTFMDITRRKAAEDEIRNL 738 Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 ++ D TGLPNRR + + L + + + + IDLDNFK +ND GH+ GDL L Sbjct: 739 AFFDLQTGLPNRRLLLDRLQQALAASARHRRQGALLLIDLDNFKTLNDTLGHDKGDLLLQ 798 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN------ADISSLRERIQQQIRGEYHLG 287 QV +RL + G + RLGGDEF+V+ N +L +RI ++ Y L Sbjct: 799 QVAQRLASCVHEGGTVARLGGDEFVVMLENLSEHLEAAATQAETLAKRILASLKQTYSLD 858 Query: 288 DVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + Y AS+GI + + L AD+AMYQ K + T P + + Sbjct: 859 GYE-YQSTASIGITLFSEQQETTEDLLKRADLAMYQAKAVGRNTLRFFDPEMQA 911 >UniRef50_C5V1H2 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V1H2_9PROT Length = 1134 Score = 280 bits (717), Expect = 5e-74, Method: Composition-based stats. Identities = 57/229 (24%), Positives = 106/229 (46%), Gaps = 8/229 (3%) Query: 119 GSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 G + G + + + + ++ G +Y+ + + Q + A + ++ D Sbjct: 644 GRWRGEIWDKRKSGQIYPKWMTITAVRDENGKTTEYVAIFSDITQRKLAEEEIRNLAFYD 703 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 +LT LPNRR + + L S++ + F+D+D FK +ND GH+ GDL LI+V E Sbjct: 704 ALTRLPNRRLLLDRLHAALSVSARSRRFGAVLFLDMDRFKTLNDTMGHDYGDLLLIEVAE 763 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNNE------NADISSLRERIQQQIRGEYHLGDVDL 291 R+ + + + RLGGDEF+++ + + I+++ E+I+ + Y L + Sbjct: 764 RIKLCVREIDTVARLGGDEFVILVEEIDTRAEETSKHIAAIAEKIRSALSVPYRLKEKH- 822 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 ++ S+G+ D L AD+AMYQ K + P + Sbjct: 823 HHSSPSIGVCLYRGIEESTDDLLKHADMAMYQAKDSGRNAVRFFDPLMQ 871 >UniRef50_C5V4E4 Diguanylate cyclase with PAS/PAC sensor n=2 Tax=Gallionella ferruginea ES-2 RepID=C5V4E4_9PROT Length = 352 Score = 280 bits (717), Expect = 5e-74, Method: Composition-based stats. Identities = 59/192 (30%), Positives = 91/192 (47%), Gaps = 2/192 (1%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 G + I + + + + L ++ D LT LPNR + E L AR + Sbjct: 147 GKPLRMIGTLSDITVRKNIDERLRYMAHYDPLTNLPNRALLSERLQQSVVRARRDQSTMA 206 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA 267 + F+DLD FK +ND GH +GD L QV RL + + + I R+GGDEF+V+ + Sbjct: 207 LMFLDLDKFKPVNDTLGHETGDQLLQQVAVRLLSCVRASDTIARIGGDEFVVLLHAIDQE 266 Query: 268 -DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 D + + E+I + + +G+ ++ G S+GI TD L ADIAMYQ KK Sbjct: 267 PDAAMVAEKILHSLNRPFSIGEHEIRISG-SIGIAAYPQHGTDEKLLLINADIAMYQAKK 325 Query: 327 HKQKTPFVAHPA 338 + + Sbjct: 326 EGRNSYRFFTQE 337 >UniRef50_B8DLV2 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DLV2_DESVM Length = 896 Score = 280 bits (716), Expect = 7e-74, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 122/242 (50%), Gaps = 17/242 (7%) Query: 115 HLPDGSFYGTLCAASSEKRQW----------SERAEQVLQLFA-----GLIAQYIQKEAL 159 H D +FY + A E+ +W E + L + A G Y+ Sbjct: 384 HHHDSAFYEDMWRALVEEGRWEDEIWNRRRNGEVYPEWLSISAIPGPTGRTEYYVAVFHD 443 Query: 160 VEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLI 219 + +L+ + + Q++ D+LTGLPNR + + L + AR + K+ + +DLDNFK + Sbjct: 444 ITELKAKESQIQHQAHHDALTGLPNRALLRDRLGMAINGARREDRKVAVLSVDLDNFKQV 503 Query: 220 NDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQ 278 ND GH GD++L Q E++ + + + + R+GGDEF+VV + E D + + ER+ Sbjct: 504 NDSLGHMVGDIYLQQAAEQMRQMVRPQDTLARVGGDEFVVVLQDVEGERDAAQVAERLLA 563 Query: 279 QIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPA 338 + + + +L+ GAS+GI + D D+ + ADIAM + K+ ++ + PA Sbjct: 564 RFTDPVRVQEHELFV-GASVGIALFPDDGDDPDTLVRNADIAMSRAKEQGKRRYHLFTPA 622 Query: 339 LH 340 ++ Sbjct: 623 MN 624 >UniRef50_B9ZNJ0 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Gammaproteobacteria RepID=B9ZNJ0_9GAMM Length = 706 Score = 280 bits (716), Expect = 7e-74, Method: Composition-based stats. Identities = 58/187 (31%), Positives = 92/187 (49%), Gaps = 1/187 (0%) Query: 155 QKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLD 214 + +E+ A + Q+Y D LT LPNR + + + A+ H + + FIDL+ Sbjct: 256 GTARDITDRKESEAFINFQAYHDLLTRLPNRALFRDRVDVAIAQAQRQGHPLAVMFIDLN 315 Query: 215 NFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADIS-SLR 273 FK+IND GH GD L V +RL + G+ + R GGDEF ++ + + + Sbjct: 316 RFKVINDSLGHTIGDRLLQAVAQRLLGCIRKGDTLSRFGGDEFTLLLPQISRQEAAVDVA 375 Query: 274 ERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPF 333 E+I + + +HLG Y GAS+GI ++ + ADIAMY+EK + Sbjct: 376 EKILESLNEPFHLGGDHELYVGASIGIAIYPEGGDTLETLIRHADIAMYREKNTGKNGIR 435 Query: 334 VAHPALH 340 + P +H Sbjct: 436 LFAPEMH 442 >UniRef50_B3PKJ2 EAL domain protein n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PKJ2_CELJU Length = 798 Score = 279 bits (715), Expect = 8e-74, Method: Composition-based stats. Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 3/225 (1%) Query: 119 GSFYGTLCAASSEKRQW-SERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 G + G L ++ S + + G YI + + + + A + ++ D Sbjct: 303 GHWQGELINQRKSGEEFPSWFSVTQVTNSRGEPEHYIAIFNDITEHKNSRAQIEFLAHHD 362 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 +LTGLPNR + + L + R K+ I FIDLD FK +ND GH GD L + + Sbjct: 363 ALTGLPNRILLNDRLEMAITQVRRQGEKLGILFIDLDRFKNVNDSLGHGVGDQILQEAAK 422 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGA 296 RL + G+ + RLGGDEF+V+ +++ L ++++Q++ Y + + L+ Sbjct: 423 RLTANVRTGDTVSRLGGDEFVVLFPRVRTEGNLADLTIKLREQLQLPYTVDGISLHI-TP 481 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 S+GI + D ++ + AD AMY K+ + P L++ Sbjct: 482 SIGIAVYPDDGEDPNTLIKNADAAMYLAKEKGRNNYQFYTPTLNA 526 >UniRef50_C6P1C1 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P1C1_9PROT Length = 581 Score = 279 bits (715), Expect = 8e-74, Method: Composition-based stats. Identities = 74/331 (22%), Positives = 136/331 (41%), Gaps = 25/331 (7%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 ++A +LA + + + + V+++ + + VD + +Q I A + Y Sbjct: 273 LLAVAGMALAILATAQRKAMHQIALNAKVSEVSNDGIVIVDEDNYIQDINPAFTTLTGYT 332 Query: 65 PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGT 124 E+ + + + F+ D W + G + G Sbjct: 333 RED-AIGRNPRFLSAGKQSHEFY----ADMWKSLLEV-----------------GHWEGE 370 Query: 125 LCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLP 183 + + + E+ + L+ G + + + + Q R + + D LTGLP Sbjct: 371 IWNRRKDGEIYLEKLSIYTLKDAQGKVVNRVGVFSDITQSRVEQETVAHHAQHDFLTGLP 430 Query: 184 NRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQ 243 NR + +LA+ + K + +IDLD FK +ND GH GDL L+ V +RL + Sbjct: 431 NRLLFRDRFNQQLALAKRYSKKFAVMYIDLDRFKPVNDTLGHQVGDLLLMAVADRLKSQV 490 Query: 244 QNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVE 302 + + + R GGDEF ++ D+++L E+I ++ + L + + G SLGI Sbjct: 491 REIDTVSRFGGDEFAILVSEVVTQRDVTALAEKILAALKAPFVLENHTVNISG-SLGIAI 549 Query: 303 VDPETTDADSALHAADIAMYQEKKHKQKTPF 333 + D ++ L AD AMY+ K T Sbjct: 550 YPDDGMDMETILSNADTAMYKAKHKGANTYC 580 >UniRef50_A1TX84 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1TX84_MARAV Length = 890 Score = 279 bits (715), Expect = 8e-74, Method: Composition-based stats. Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 2/208 (0%) Query: 135 WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTT 194 W+E A + G IA +I V + AAL Q+ D LTGLPNR + + L Sbjct: 425 WNEVALAAVHNEHGEIAHFISVFNDVTDRKRYEAALEYQANHDDLTGLPNRNLLRDRLEH 484 Query: 195 LFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGG 254 + A + K+ + +DLD FK +ND GH GD + +V R++ ++ + + RLGG Sbjct: 485 AITKATREHTKLAVLLLDLDQFKRVNDGLGHKIGDTLIQRVASRMSQCVRDSDTVARLGG 544 Query: 255 DEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSA 313 DEF+++S + + ++L +++ +Q R + + ++ AS+GI + + D Sbjct: 545 DEFMILSTDIRDERAAATLAQKLLRQFRQKVAINGHEI-IASASIGIAMFPKDGDNGDEL 603 Query: 314 LHAADIAMYQEKKHKQKTPFVAHPALHS 341 AD AMY+ K + +++ Sbjct: 604 FRNADTAMYRAKDVGRNGFQFYSAEMNN 631 >UniRef50_Q3A5N0 Sensory box/GGDEF family protein n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A5N0_PELCD Length = 808 Score = 279 bits (715), Expect = 9e-74, Method: Composition-based stats. Identities = 66/329 (20%), Positives = 128/329 (38%), Gaps = 14/329 (4%) Query: 18 SLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLC 77 S L R+++E +++ +T + ++E S + W Sbjct: 449 SRNELNREIIERTRAESELRATSAQRQELE------SIVNQSPAVAFLWRLRDKWAAEFV 502 Query: 78 KRAIDENCFFSDEVPDRWGDCIAAR-----NLGITTFLSTPIHLPDGSFYGTL-CAASSE 131 I + + + D ++ ++ +S D + Sbjct: 503 SDNIRQFGYEPTDFTSGKVDFLSIVHPDDVEKALSAAISAIKRGRDEQLSLEFRLIKYNG 562 Query: 132 KRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFEN 191 W + + + + + V ++A + ++ D+LTGLPNR + Sbjct: 563 DIAWVDVRLWLGRDQGDAVTHFQGVMLDVSDRKKAQEQVRQLAFYDALTGLPNRTLLANR 622 Query: 192 LTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGR 251 L + A+ + + ++DLD FK IND +GH +GD+ L +RLN+ + + + R Sbjct: 623 LDQSLAQAQRDGRMLALLYLDLDRFKEINDTYGHAAGDMVLQAAAQRLNSCIRRNDTVAR 682 Query: 252 LGGDEFLVVSLNNENADI-SSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDA 310 LGGDEF+V+ EN D +++ E+I + ++ + + L S+G+V + Sbjct: 683 LGGDEFVVLLPGLENVDQPTTVAEKILKVMKVPFQVESQQLNV-TPSIGMVLYPEHGQEL 741 Query: 311 DSALHAADIAMYQEKKHKQKTPFVAHPAL 339 L ADIAMY K + + Sbjct: 742 GVLLKRADIAMYAAKSRGRNGYACFSEEM 770 >UniRef50_Q47FU0 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Dechloromonas aromatica RCB RepID=Q47FU0_DECAR Length = 1006 Score = 279 bits (715), Expect = 1e-73, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 106/224 (47%), Gaps = 3/224 (1%) Query: 119 GSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 G + G + + + + + V++ G+I ++ V R A L ++ D Sbjct: 523 GFWQGEIWDRRKDGGIYPKWMSISVIRGEDGMIRYHVAHFTDVSSERAAEERLHHMAHHD 582 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 LTGL NR ++ L + AR ++ + F+DLD FK+IND GH+ GD LI+V Sbjct: 583 VLTGLLNRLSLKGRLDQALAAARRDGSRVAVLFVDLDRFKVINDTLGHHVGDELLIEVAN 642 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNNENADISS-LRERIQQQIRGEYHLGDVDLYYPGA 296 RL ++ +V+ R+GGDEF+++ E+ + + E++ + Y +G DLY Sbjct: 643 RLRDGVRDSDVVARVGGDEFVIMLSGVEHTSAVAMVAEKLVFSVGQSYQIGGYDLY-STP 701 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 S+GI + D D + AD AMY K + ++ Sbjct: 702 SIGIAIYPTDGEDGDILMKNADAAMYHAKMAGRNNFQFFDAKMN 745 >UniRef50_A1K5S9 GGDEF/EAL-domain containing protein n=1 Tax=Azoarcus sp. BH72 RepID=A1K5S9_AZOSB Length = 1090 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 67/207 (32%), Positives = 100/207 (48%), Gaps = 9/207 (4%) Query: 136 SERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTL 195 SE + VL+ G + V REA A + ++ DSLTGLPNR A + Sbjct: 632 SEWQDGVLERIRGTV-------QDVTSAREAEAHIQYLAHYDSLTGLPNRSAWMNQARSA 684 Query: 196 FSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGD 255 SLA+ H + + F+DLDNFK +ND GH GD L V +RL + + RLGGD Sbjct: 685 LSLAQRHQHILAVLFLDLDNFKTVNDSLGHPVGDRLLAAVAQRLAHCLREEDSFARLGGD 744 Query: 256 EFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSAL 314 EF+ + A D +++ ++ + + D +L P S+GI + TD D+ L Sbjct: 745 EFVALLPRVTRAEDAAAVARKMLDALATPVVIDDHELA-PSVSIGISLFPSDGTDVDTLL 803 Query: 315 HAADIAMYQEKKHKQKTPFVAHPALHS 341 AD AMY K+ + P +++ Sbjct: 804 KHADTAMYGAKEVGRNNFQFFVPEMNT 830 >UniRef50_B8GM77 Putative uncharacterized protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GM77_THISH Length = 759 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 67/223 (30%), Positives = 101/223 (45%), Gaps = 3/223 (1%) Query: 119 GSFYGTLCAASSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 G + G + + + R + V++ G ++ YI + ++E + L ++ D Sbjct: 259 GHWRGEILDRTRDGRVIPLLQTISVVRDTQGAVSHYITIVTDISSIKETQSRLDFLAHHD 318 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 LT LPNR L A + FIDLD FK IND GH GD L+QV Sbjct: 319 PLTELPNRLLFTARLEHAIDWAVRNQAHFGLLFIDLDRFKTINDSLGHQLGDRLLVQVAR 378 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGA 296 RL L + + I RLGGDEF+V+ NA + L E++ +R + L + +L+ G Sbjct: 379 RLRGLVRKSDTIARLGGDEFVVLVEGIHNAGEAELLAEKLVHAMRQPFFLEETELHI-GC 437 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 S+GI + D + L AD AMY+ K + L Sbjct: 438 SIGITLYPEDGEDPVTLLKNADAAMYRVKDFGRDGFCKFSQDL 480 >UniRef50_Q46T37 PAS:GGDEF n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46T37_RALEJ Length = 707 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 84/328 (25%), Positives = 133/328 (40%), Gaps = 24/328 (7%) Query: 14 AKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWD 73 + Q +R+ + L V + + + +D L + A + Sbjct: 258 TERQRANEALRESEQRLRTVIETQPECVKTIDRSGNLLEMNAA----------GLAMIGA 307 Query: 74 YSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKR 133 SL + E D + A G + L I G R Sbjct: 308 DSLAQAQRHYTEVILPEYRDAFAALHARVMSGESGLLEFEIVGLRGQ------------R 355 Query: 134 QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLT 193 +W E ++ G + + + ++A+ + ++ D+LTGLPNRR + Sbjct: 356 RWLETHATPMRGADGCVTRLLAVTRDTTDRKQASDRIQHLAHYDALTGLPNRRLVENRAR 415 Query: 194 TLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLG 253 FS A H + I F+DLD FK IND GH++GD LI++ RL L G+V+ R G Sbjct: 416 QAFSQAS-DGHTLAIMFLDLDLFKDINDTLGHSAGDASLIELARRLRPLLSEGDVLARFG 474 Query: 254 GDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSA 313 GDEFL++ + + +++ I YHLG DL G S+GI + TD +S Sbjct: 475 GDEFLILLPDACERTAAQTAQKVLDTIAEPYHLGPYDLTVSG-SIGIALYPRDGTDFESL 533 Query: 314 LHAADIAMYQEKKHKQKTPFVAHPALHS 341 AD AMY KK ++ P + + Sbjct: 534 SKNADTAMYHVKKQGRRGYCFFTPQMQA 561 >UniRef50_Q47GC0 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Betaproteobacteria RepID=Q47GC0_DECAR Length = 862 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 16/232 (6%) Query: 119 GSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIAQ 173 G++ G + +R+ E + L + A G ++ YI + + ++A + A Sbjct: 341 GAWQGEIWG----RRKNGEVYPKWLSISAVVGTNGRVSHYIGTHNDITERKKAEERINAL 396 Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 ++ D LTGLPNR + + L + + + FIDLDNFK +ND GH+ GD L Sbjct: 397 AFFDQLTGLPNRTLLLDRLKQTILSSGRSDSHGALLFIDLDNFKTLNDTLGHDVGDQLLK 456 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN------ADISSLRERIQQQIRGEYHLG 287 QV RL ++G+ + RLGGDEF+VV N D ++ E+I + Y LG Sbjct: 457 QVALRLTHCVRDGDTVARLGGDEFVVVLANLNTNDKEAAQDTETVAEKILATLNQTYQLG 516 Query: 288 DVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 V ++ AS+G D + AD++MY+ K + P++ Sbjct: 517 HVT-HHSSASIGATLFKGPLIPIDDLMKQADLSMYKAKAAGRNAVRFFDPSM 567 >UniRef50_C6MBX5 Diguanylate cyclase/phosphodiesterase n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MBX5_9PROT Length = 891 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 67/239 (28%), Positives = 114/239 (47%), Gaps = 9/239 (3%) Query: 103 NLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQ 162 ++ +S+ I G G L A + + Q IA + + + Sbjct: 388 QDNLSNCISSAIISH-GQQCGLLQVAYIRNFPSTLTYQ---QNLVDTIAHDLGRWY---E 440 Query: 163 LREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDR 222 +EA +I + D+LTGLPNR + + + + L ++ + FIDLD+FK IND Sbjct: 441 GKEAEKRIIEMATHDALTGLPNRYLLRDRIEQVLVHDTRLQRQMAVLFIDLDHFKTINDS 500 Query: 223 FGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIR 281 GH GDL L V +RL + +N + + R GGDEF+VV + E+ D + + ++I Sbjct: 501 LGHEIGDLLLKAVADRLKSCVRNEDTVARQGGDEFIVVLNSIAESLDAAKVAQKILDSFA 560 Query: 282 GEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 +H+ +L+ G S+GI + +A++ L +D+AMY KK+ + L+ Sbjct: 561 LPFHIHKNELHIDG-SIGIAVFPDDGVNAETLLKNSDVAMYHAKKNGRNNYQFFTDELN 618 >UniRef50_A1ATC4 Periplasmic sensor diguanylate cyclase/phosphodiesterase n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ATC4_PELPD Length = 876 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 2/187 (1%) Query: 156 KEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDN 215 + + + L+ ++ D+LTGLPNR F+ L + + ++DLD Sbjct: 416 VLRDISERKRFEGELMHMAHHDALTGLPNRTLFFDRLRQGLYKKERSGKMLAVIYLDLDR 475 Query: 216 FKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRE 274 FK+IND GH++GD+ L +V +RL + + + I RLGGDEF ++ AD + E Sbjct: 476 FKIINDTLGHHTGDMLLKEVADRLRGVVRKADTISRLGGDEFTIIIDEIATPADSLLVAE 535 Query: 275 RIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFV 334 +I + L +++ AS+G+ + A+ L AD AMY K+ + T Sbjct: 536 KILHVFSAPFRLEKHEMFI-TASMGVTLYPNDGDTAEKLLKNADTAMYHAKEEGRNTYQF 594 Query: 335 AHPALHS 341 ++S Sbjct: 595 FSEEMNS 601 >UniRef50_B7JB43 Sensory box-containing diguanylate cyclase, putative n=1 Tax=Acidithiobacillus ferrooxidans ATCC 23270 RepID=B7JB43_ACIF2 Length = 1057 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 86/330 (26%), Positives = 153/330 (46%), Gaps = 12/330 (3%) Query: 13 LAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSW 72 L + ++++ ++ L + + + + D + R++ + A +M P V Sbjct: 434 LLQGRNVQDMLETTCTRLGEMGIFHTVGVVRPDAQGRVRVLAGAGPGIEMMQPFQIHVDD 493 Query: 73 DYSLCKRAIDE-----NCFFSDEVPDR-WGDCIAARNLGITTFLSTPIHLPDGSFYGTLC 126 S+ RA E + FS DR WG +A G + L+TP+ DG+ + + Sbjct: 494 PSSMSARAWREQRTIVHSDFSSSQADRPWGQVLAT--SGWVSALATPV-WRDGTPFAVIK 550 Query: 127 AASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 S+E + + + A L+ + + L E LR + TD LTGLPNRR Sbjct: 551 FISTE-QVFDADTTTACERLASLLGHSLDEHDLKEHLRLLQEQEAKIARTDLLTGLPNRR 609 Query: 187 AIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNG 246 + + + A N + + +DLD FK +ND +GH +GD L+ +G+RL+ + Sbjct: 610 FLEIQMEQAIARAERHNQLLAVCMLDLDGFKPVNDTYGHGAGDEVLVALGKRLSEALRKS 669 Query: 247 EVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVD- 304 + + RLGGDEF+++ + E+ D++++ ++I+ I L + GAS+G+ Sbjct: 670 DFVARLGGDEFVLLVEDLEDLDDLANIMKKIEDTITAPIPLSNGKSVQIGASMGVALYPF 729 Query: 305 PETTDADSALHAADIAMYQEKKHKQKTPFV 334 +T D L AD AMY+ K +K Sbjct: 730 GDTDTGDKLLRLADQAMYESKANKAARERF 759 Score = 60.9 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 76/178 (42%), Gaps = 8/178 (4%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARN---S 59 D ++ +++Q ++ + L++ + E+ + ++ ++++ D + R Q + A Sbjct: 13 DALLTKINQMISGAEDESVLLQHICEIAVQQSGLKLAFVSRPDTQGRFQFLAAAGQVGYL 72 Query: 60 QKMYIPENFTVSWDYSLCKRAIDE-NCFFSDEVPDRWGDCI---AARNLGITTFLSTPIH 115 + ++I + + RA E +F A+ G+ + PI Sbjct: 73 KDLFISSDAQIPEGQGPAARAWREARVYFGTNFTKEPFLAPWKKRAQAYGLADSATLPIF 132 Query: 116 LPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQ 173 DG + L ++ Q+ + + +LQ + I+Q +++ V++LR A++ A Sbjct: 133 -RDGKVWAILSVYRGDEAQFDDALQTILQQLSLQISQGLERLQDVQRLRFLRASVEAL 189 >UniRef50_A1WXR7 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Halorhodospira halophila SL1 RepID=A1WXR7_HALHL Length = 749 Score = 278 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 107/226 (47%), Gaps = 2/226 (0%) Query: 116 LPDGSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 G + G + + E + G ++ + + QL++A++ + Sbjct: 258 DRSGYWQGEIWHRRKGGELYPEWLTINRIDDATGQPQHFVAVFSDITQLKDAHSRSEYLA 317 Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 D LTGLPNR + L + + ++ + F+DLD+FK IND GH GD L+Q Sbjct: 318 NHDPLTGLPNRSLFQDRLQQAIAQTQRHEGQVGLMFLDLDHFKTINDTLGHEVGDELLVQ 377 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYP 294 V ERL L ++ + + R+GGDEF VV + + ++ S+ +R+ + + G + + +L Sbjct: 378 VAERLGELVRDVDTVARIGGDEFTVVLTDCDPEEVGSIAQRLVEGLGGTFVVDGREL-QA 436 Query: 295 GASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 S G+ + D + AAD+AMY+ K+ + + LH Sbjct: 437 TPSAGLALYPRDGEDVHTLCKAADMAMYRAKEDGRNRLRLCESGLH 482 >UniRef50_C5CTK8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Variovorax paradoxus S110 RepID=C5CTK8_VARPS Length = 1107 Score = 278 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 87/345 (25%), Positives = 147/345 (42%), Gaps = 21/345 (6%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARL-----QHIMFARNSQKM 62 R+++ LA + E+++ Q LE L + L V + + H + + Sbjct: 504 RIARLLAGDGRAETVITQALEALCTDLRWDCGALWSVGEDGVVRCAAAWHADHIPPAVRQ 563 Query: 63 YIPEN--FTVSWDYSLCKRAIDENCFFSDEV---PDRWGDCIAARNLGITTFLSTPIHLP 117 + ++ F D RA +V P + AR G+ + P+ + Sbjct: 564 FASDSRSFEYRADEGSLGRAWKTGGIVQIDVLAAPGHFARDAMAREAGLAVGIVVPMAVT 623 Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 D L S + ++ L++ A IAQY +Q ++A +L + D Sbjct: 624 DS--ITALELLGSNPYAIDAQTQESLRVIALQIAQY-------KQRKQAERSLRFMASHD 674 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 LTGL NR A+ L + + + F+DLD FK IND GH GD + GE Sbjct: 675 GLTGLFNRAALQHELARAIKRSNRHQKQFAVIFVDLDRFKHINDTLGHGVGDEMIKICGE 734 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGA 296 RL L + +V+ R GGDEF+++ N +A D + L E++ + L +L+ A Sbjct: 735 RLTALLREADVVARFGGDEFVLLLENLSSANDAAGLAEKVLACCAEPFFLAGRELHV-SA 793 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 S+G+ DA++ L AD AMY+ K+ + T +++ Sbjct: 794 SVGVSIYPDNGADAEALLKNADTAMYRAKERGRNTFRFYAAKMNA 838 >UniRef50_Q21UE9 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=3 Tax=Comamonadaceae RepID=Q21UE9_RHOFD Length = 1114 Score = 278 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 71/344 (20%), Positives = 129/344 (37%), Gaps = 27/344 (7%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 + + + + E +R+ +T++ S + + D + R + + + Sbjct: 535 VLWNGLITDITARKQSEERLRESEARFRALTELSSDWYWEQDAQFRFVRLDGSSQTSMRL 594 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 +N+ + + + + W A T + Sbjct: 595 PEDNYLGVTRWETDAQGVSQAQ---------WAAHRAVLQAHETF-----------HDFE 634 Query: 124 TLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLP 183 LC + W + + G Y + + + A + ++ D LT LP Sbjct: 635 MLCTDAVGCLTWVAISGTPIFDVQGQFKGYRGIGRDISERKRAEEKIERLAFYDVLTDLP 694 Query: 184 NRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQ 243 NRR + + L + + + FIDLDNFK +ND GH+ GD L QV +RL Sbjct: 695 NRRLLMDRLQQALVSSAREHGAGALLFIDLDNFKDLNDTQGHDVGDALLQQVAKRLLASV 754 Query: 244 QNGEVIGRLGGDEFLVVSLNNENADI------SSLRERIQQQIRGEYHLGDVDLYYPGAS 297 + + + RLGGDEF+V+ E + +I Q+ Y LG + ++ S Sbjct: 755 RETDTVARLGGDEFVVMLQGLERTQADAITQVEQVGRKIMAQLNQPYRLGSAE-HHSTPS 813 Query: 298 LGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 +G+ D + D L AD+AMY+ K + T P + + Sbjct: 814 IGVTLFDNQQQTLDDLLKQADLAMYEAKSAGRNTLRFFDPTMQA 857 >UniRef50_Q1GXZ6 Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor(S) n=2 Tax=Proteobacteria RepID=Q1GXZ6_METFK Length = 1238 Score = 278 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 62/235 (26%), Positives = 106/235 (45%), Gaps = 10/235 (4%) Query: 116 LPDGSFYGTLCAASSEKRQ--WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQ 173 L G T + + W E + AG+ ++ + + + + A + + Sbjct: 745 LKQGESVRTELVNYRKNGEEIWLEMDILPIANSAGVFTHWVSVQRDITERKAAESRIQHL 804 Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 ++ D LT LPNR + + L + L + F+DLDNFK +ND GH+ GD+ L Sbjct: 805 AFYDMLTNLPNRLLLLDRLEQALLNSMRLKRSGALLFLDLDNFKTLNDTHGHDFGDMLLE 864 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN------ADISSLRERIQQQIRGEYHLG 287 QV +RL + + + RLGGDEF+VV N + S + ++I + + L Sbjct: 865 QVAQRLLNSVRITDTVARLGGDEFVVVVENLSEQGCNAAQEASLVADKILLALSQPFRLS 924 Query: 288 DVDLYYPGASLGIVEV-DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + +Y S+G+ + + D L AD+AMY+ K + T PA+ + Sbjct: 925 GYE-HYSSCSIGVALFCNEQQVTVDELLKRADLAMYEAKAAGRNTFRFFDPAMQA 978 Score = 64.0 bits (155), Expect = 8e-09, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 5/173 (2%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQH-IMFARNSQKMYI 64 + + +A L+ ++ + +LE + +D I + + Sbjct: 511 QRHLLERIAAGAVLDDVLLATVTLLEEQYPDLMFSIMLLDKANAFARGIALRLPKRYLDK 570 Query: 65 PENFTVSWDYSLCKRAIDE--NCFFSDEVPDR-WGDCI-AARNLGITTFLSTPIHLPDGS 120 + + C A E +D D W + AR G+ S PI + Sbjct: 571 LKGLQIGPAAGSCGTAAYERRTVVVADIQQDLLWRNYRDLARRFGLRACWSMPILSSNQQ 630 Query: 121 FYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQ 173 GT S E R +R +++ + + I++ EQL+ ++ Sbjct: 631 VLGTFAVYSREVRVPEQREMELVSACSHIAGIAIERHHSEEQLKLLETSIARL 683 >UniRef50_A1K923 GGDEF/PAS/PAC-domain containing protein n=1 Tax=Azoarcus sp. BH72 RepID=A1K923_AZOSB Length = 1255 Score = 278 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 70/326 (21%), Positives = 126/326 (38%), Gaps = 24/326 (7%) Query: 20 ESLVRQLLEMLEMVTDMESTYLTKVDVEARLQ----HIMFARNSQKMYIPENFTVSWDYS 75 + +R + + + + D EA+L+ A + E V + + Sbjct: 913 ATALRDASGEVTAILSVARDVTQRRDSEAQLRLAATVFTHAHEGIAICDAERRIVDVNPT 972 Query: 76 LC-------KRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 C + AI + + DR G + G L Sbjct: 973 FCEITGYSRQEAIGASLALLNSGEDRQALSPDMWQTVARR----------GHWEGELWNL 1022 Query: 129 SSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + ++++R + G YI + + ++ L ++ D LTGLPNR Sbjct: 1023 RKDGTEYAQRLTISAVYDAGGTPTHYIGTFSDITFVKRQQEQLEHLAHYDPLTGLPNRSL 1082 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + + L + AR + + ++DLD FK +ND GH +GDL L+++G RL + G+ Sbjct: 1083 LADRLQLALAQARREESAVAVCYLDLDGFKAVNDELGHQAGDLLLVEIGRRLKDCVRAGD 1142 Query: 248 VIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 + RLGGDEF+++ L+ + R+ I + + AS+GI + Sbjct: 1143 TVARLGGDEFVLLLLDVAGQEECIQAVSRVLAAIARPVTIAG-EYRSVSASIGIALFPDD 1201 Query: 307 TTDADSALHAADIAMYQEKKHKQKTP 332 + + L AD AMY K+ + Sbjct: 1202 DDEPEVLLRHADQAMYLAKQRGKNCY 1227 Score = 40.9 bits (95), Expect = 0.060, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 51/171 (29%), Gaps = 21/171 (12%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 ++AR S + + L+ + D E ++ + R+ +M Sbjct: 799 LLARWVGSAIEADRSRRQLAASEARLQTIIDTEPECVSLRTPDGRVL---------EMNA 849 Query: 65 PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGT 124 V D A+ V + + AA ++ S + G Sbjct: 850 AGLALVEADSVEALNAVG----LPQLVAPAYREAFAALGRRVSAGESATLEF---EIVGL 902 Query: 125 LCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSY 175 R+W + L+ +G + + V Q R++ A L + Sbjct: 903 -----RGSRRWIDAHATALRDASGEVTAILSVARDVTQRRDSEAQLRLAAT 948 >UniRef50_C6WYT7 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WYT7_METML Length = 526 Score = 278 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 60/226 (26%), Positives = 103/226 (45%), Gaps = 12/226 (5%) Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIA 172 GS+ G + KR+ E + L + A G++ Y+ + + + Sbjct: 291 QGSWQGEIW----NKRKSGEIYPEWLTISAVKNAEGVVTNYVGTMIDITARKSIEERVHH 346 Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 ++ D LT LPNR + + L + AR N + + F+DLD FK++ND GH+ GD L Sbjct: 347 MAHYDPLTDLPNRSLLTDRLHQALAQARRENAMLAVMFLDLDKFKIVNDTLGHDIGDALL 406 Query: 233 IQVGERLNTLQ-QNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVD 290 V RL + + + RLGGDEF+V+ E D++ + + + Q + +++ + Sbjct: 407 KAVAIRLTNCFKRQTDTVSRLGGDEFVVLLAKIETEQDVAMVAQEVIQSLTETFYIEEH- 465 Query: 291 LYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAH 336 + S+GI D S L +AD AMY+ K + + Sbjct: 466 VINISCSIGISLHPKNGNDVASLLRSADNAMYESKHAGRGCFRFYN 511 >UniRef50_C5V0K3 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V0K3_9PROT Length = 1561 Score = 278 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 100/222 (45%), Gaps = 2/222 (0%) Query: 119 GSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 G + G L + + E L+ G + YI + + ++ A L D Sbjct: 1074 GWWQGELWNRRKDGTHYLEWLTIHTLRDEHGHLTNYIAIFSDITLIKAAQRRLEYMVAHD 1133 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 LT LPNR + + F+ A+ + FIDLDNFK +ND GH+ GD+ L QV E Sbjct: 1134 ELTSLPNRNELRGRMAQTFARAQRHGGTFALMFIDLDNFKNVNDNLGHDYGDVLLQQVAE 1193 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGAS 297 RL + + + R+GGDEF V+ + I++ +RI + Y + + ++ AS Sbjct: 1194 RLGLCVRTEDTVARIGGDEFNVLLDDVSETQIANTAQRILDHVSKPYLIKEQQVFV-SAS 1252 Query: 298 LGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 +GI + D ++ AD AMYQ K + + L Sbjct: 1253 IGIAVYPKDAEDIETLTKNADSAMYQAKDKGKDSYQFFTSDL 1294 >UniRef50_Q1Q678 Putative uncharacterized protein n=2 Tax=Bacteria RepID=Q1Q678_9BACT Length = 774 Score = 278 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 69/245 (28%), Positives = 116/245 (47%), Gaps = 11/245 (4%) Query: 96 GDCIAARNLGITTFLSTPIHLPDGSFYGTLCAAS-SEKRQWSERAEQVLQLFAGLIAQYI 154 + I I + L PI++ + G + + QWSE +L + + ++ I Sbjct: 537 AEKIEFERQSIKSILVLPIYI-EKKLLGFIGFDNVRSTGQWSEDDVTLLNIMSEILGNAI 595 Query: 155 QKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLD 214 + E+ + +Y D+LT LPNR +++ L + A + + I +DLD Sbjct: 596 ARV-------ESEKLISHMAYHDALTKLPNRNLLYDRLKVAMAHAIRSKNMVAIIMLDLD 648 Query: 215 NFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLR 273 FK+IND FGH GDL L V ERL + G+ I R+GGDEF++V + + D + Sbjct: 649 GFKMINDSFGHQMGDLLLKAVAERLMQCLREGDTIARMGGDEFIIVIPDLAQTEDAALFA 708 Query: 274 ERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPF 333 ++I + R + + +L+ AS+GI D++S AD+A+Y K + T Sbjct: 709 QKILEAFRLPFLIEKHELH-TTASIGITIFPLYANDSESLFKQADVALYLSKAKGKNTYQ 767 Query: 334 VAHPA 338 + P Sbjct: 768 IYKPG 772 >UniRef50_Q2BQ15 Diguanylate cyclase/phosphodiesterase domain 2 (EAL) n=1 Tax=Neptuniibacter caesariensis RepID=Q2BQ15_9GAMM Length = 594 Score = 278 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 93/206 (45%), Gaps = 2/206 (0%) Query: 135 WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTT 194 W L+ + + + + + +E L+ Q+ D LTGLPNR + L+ Sbjct: 123 WVLAHGMALRNDQNIAYRMVGSIGDITEQKEYQDKLLHQATYDHLTGLPNRALALDRLSV 182 Query: 195 LFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGG 254 S +R + + F+DLDNFK IND GH GDL L ++ RL + + I RLGG Sbjct: 183 AISRSRRNKTSVGLLFVDLDNFKKINDTLGHEVGDLHLKEISNRLGYCFREEDTIARLGG 242 Query: 255 DEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSA 313 DEFLV+ + + + + ERI + + + AS+G+ + + Sbjct: 243 DEFLVILPDLDSPKQVEEVCERILATAMQPVTINGYE-FSTSASIGVTIYPDDGYEPSGL 301 Query: 314 LHAADIAMYQEKKHKQKTPFVAHPAL 339 L AD AMYQ K + T P + Sbjct: 302 LRNADAAMYQAKAQGKDTFCFFTPEM 327 >UniRef50_B3E661 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=cellular organisms RepID=B3E661_GEOLS Length = 1027 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 106/208 (50%), Gaps = 2/208 (0%) Query: 135 WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTT 194 WS + L+ +G I +I + + + A A + +Y D LT LPNRR + + L Sbjct: 560 WSITSISPLRNDSGEITHFIANVEDINERKNAEATIEHLAYFDPLTDLPNRRMLQDRLEL 619 Query: 195 LFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGG 254 +R + + ++DLD+FK +ND GH +GDL L ++ R + + ++ +V+ RLGG Sbjct: 620 ALRRSRRHGSNVALMYLDLDSFKHVNDSMGHPAGDLLLKEMAGRFSGVVRDDDVVCRLGG 679 Query: 255 DEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSA 313 DEF ++ + +++ D+ + +++ + + L ++ AS+GI + D + Sbjct: 680 DEFALILHDIHQDQDVVPIAQKLIEAVAQPVPLDGREV-VVTASIGIALFPRDGGDVKNL 738 Query: 314 LHAADIAMYQEKKHKQKTPFVAHPALHS 341 ADIA+Y K+ + T L+S Sbjct: 739 EKHADIALYHAKEEGKNTFRFYLEELNS 766 >UniRef50_Q1H236 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Bacteria RepID=Q1H236_METFK Length = 722 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 49/188 (26%), Positives = 92/188 (48%), Gaps = 2/188 (1%) Query: 155 QKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLD 214 + ++ + Q+Y D+LTGLPNR + L + A+ ++ I F+DLD Sbjct: 260 GVARDISDRKKVEEVITRQAYHDTLTGLPNRALFKDRLNVALNHAKRNQQQLAIMFLDLD 319 Query: 215 NFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLR 273 FK +ND GH GD L V +RL+ + + + R+GGDEF ++ + + D S + Sbjct: 320 RFKWVNDTLGHFYGDELLKHVAQRLSGCLRAQDTLARMGGDEFTLLLHDLQQPEDASLVA 379 Query: 274 ERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPF 333 +I +++ + L + +++ S+GI ++ + +ADIAMY K + Sbjct: 380 AKIVDELKRPFLLDEREIFISS-SIGIALYPDHGDTIETLIKSADIAMYHVKWRGKNGYQ 438 Query: 334 VAHPALHS 341 ++++ Sbjct: 439 YYEASMNA 446 >UniRef50_B8GQW3 Signal transduction protein containing a membrane domain an EAL and a GGDEF domain n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GQW3_THISH Length = 926 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 71/349 (20%), Positives = 133/349 (38%), Gaps = 41/349 (11%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFA-------R 57 ++ ++ ++ ++ ++ V + S + + D + R + A Sbjct: 341 VLRGLTLDVSPQRQAALALKDSESRYREVIEHVSEVIFRTDHQGRWTLLNPAWEELTGYS 400 Query: 58 NSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLP 117 ++ + P + VS + S A+ ++ R L + T P Sbjct: 401 IAESLGRPVSEFVSAEDSPLLEALTNQLLHGNKSQLR-------DELRLLTRAGEP---- 449 Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 +W + Q G + + + + A + ++ D Sbjct: 450 ----------------RWVSVFVRSSQDAEGRVIATFGTLTDITERKRAEEEIRRLAFYD 493 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 SLT LPNR +++ L + A H I F+DLDNFK IND GH+ GD L QV Sbjct: 494 SLTELPNRSLLYDRLRLAMASAARSRHHGAILFLDLDNFKDINDTLGHDVGDELLRQVAS 553 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNNENA------DISSLRERIQQQIRGEYHLGDVDL 291 R+ + + + RLGGDEF+++ + + +L ++ + + LG+ + Sbjct: 554 RMQGTIRETDTLARLGGDEFVIILNDLHPEQAQAAVEAETLGSKLLHLLAEPFRLGEHE- 612 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + S+G + D L AD+AMY+ K + T P +H Sbjct: 613 RHCTPSIGATLFGDGEVNVDELLKQADLAMYRAKDSGRNTLCFFEPEMH 661 >UniRef50_A6U700 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=4 Tax=Rhizobiaceae RepID=A6U700_SINMW Length = 772 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 84/344 (24%), Positives = 145/344 (42%), Gaps = 16/344 (4%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 AR+ + +AK + L +L+ ++E + + + + R A + + Y Sbjct: 177 QARLLEMIAKGKPLTEFFNELVLLIEALLPGIKGSILLLSEDGRHLLHGAAPSLDRAYSA 236 Query: 66 E--NFTVSWDYSLCKRAI--DENCFFSDEVPD-RWGD-CIAARNLGITTFLSTPIHLPDG 119 + + C A E SD D W D + ++ G+ + STPI + Sbjct: 237 AVHALEIGPNAGSCGTAAWRGEQVIVSDVYADPLWADYALLLKSSGLRSCWSTPILSRER 296 Query: 120 SFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSL 179 GT + E E+ ++++ + A L I + + A + ++ D+L Sbjct: 297 KVLGTFALYAHEVATPCEQEQELIAMAAHLAGIAI-------ERKRAEDRISFLAHHDAL 349 Query: 180 TGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERL 239 TGLPNR E + + R + ++AF+DLDNFKLIND GH +GD L V R+ Sbjct: 350 TGLPNRVLFEEQVDGMLEEIRERDQCAVLAFLDLDNFKLINDSLGHAAGDELLKAVAGRM 409 Query: 240 NTLQQNGEVIGRLGGDEFLVVSLN--NENADISSLRERIQQQIRGEYHLGDVDLYYPGAS 297 + + + R+GGDEF+++ E + S E I+ I L L S Sbjct: 410 RASVRKADFVVRVGGDEFIILLNGLPKERDIVLSRLEDIRSAIAMPLQLQGRSLQV-SCS 468 Query: 298 LGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 +G+ + A L AD+AMY+ K+ + V + + Sbjct: 469 MGVACFPNQGRTAGELLANADMAMYRAKELGRDNIQVFTEEMAA 512 >UniRef50_Q478L4 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=5 Tax=Proteobacteria RepID=Q478L4_DECAR Length = 1665 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 3/223 (1%) Query: 118 DGSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYT 176 DG + G + + E+ ++ G ++ ++ + + L++ L ++ Sbjct: 1044 DGYWRGEIWNRKKSGEIFVEQLTISSVRNRDGALSNFVAIFSDITLLKQHQQRLEHLAHF 1103 Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 D+LT LPNR + + + + A + + ++DLDNFK INDR+GH+ GD LI+V Sbjct: 1104 DALTQLPNRMLLSDRMQLAKAQAERSGKTLAVCYLDLDNFKPINDRYGHSVGDFLLIEVA 1163 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPG 295 +RL T + G+ + RLGGDEF+++ N ++ + R+ + + + Sbjct: 1164 QRLKTCVRAGDTVARLGGDEFVLLITNLDDLNECDHAMTRVISALSQPFRVS-AQFVTVS 1222 Query: 296 ASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPA 338 AS+G+ + +D+D+ L AD +MY K+ + + P Sbjct: 1223 ASIGVTLYPHDGSDSDTLLRHADQSMYAAKQEGRNRYHLFDPE 1265 Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 52/169 (30%), Gaps = 6/169 (3%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 Q+ + L ++L ++ + +E + D + R + A + Y Sbjct: 398 QLRNQALAGLIAGEALPRVLELIALSVEAEIPGWHCSILLADKDGRQLRLGAAPSLPPAY 457 Query: 64 ---IPENFTVSWDYSLCKRAIDENCFFSDEVPDR--WGDCIAARNLG-ITTFLSTPIHLP 117 + S A D + + W + + G + S P+ Sbjct: 458 GLAVDGMPIAPGVASSGAAAATRQRVVVDNINEHPNWVNYRDLADHGCFSACWSEPVIGT 517 Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREA 166 +G GT A E +L A L A I+++ + L + Sbjct: 518 NGQLLGTFTAYYPSPTSPHEDYLGLLLQAAQLTALVIERQNSSQDLERS 566 >UniRef50_C5T451 Diguanylate cyclase with PAS/PAC and GAF sensors n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T451_ACIDE Length = 467 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 78/337 (23%), Positives = 138/337 (40%), Gaps = 11/337 (3%) Query: 2 SDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQH-IMFARNSQ 60 ++ + A + Q+ E LV + +++ + V + L+ + F + Sbjct: 117 TELLQAAIYAISEAAQASEDLVALFARVHQIIATLLPASNFAVALHDPLRDAVSFPYHVN 176 Query: 61 KMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFL-STPIHLPDG 119 + Y +LC I + + P+H G Sbjct: 177 ERYPAPTTRPLDADALCSHVIRRGQTLLITPDSLAPEVPPLAGSPQPLYWLGVPLHAQGG 236 Query: 120 SFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSL 179 + SE+ ++S +++LQ + +A I++ Q+RE L + D L Sbjct: 237 VIGALVLQGYSEEARYSASDKELLQFVSTQVAAAIER----TQMRE---RLQHMAQYDPL 289 Query: 180 TGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERL 239 T LPNR+ + L T + AR + + + F+DLD FK +ND GH GDL L +V +RL Sbjct: 290 THLPNRQLFLDRLKTALTRARRDDSLLSLLFVDLDRFKQVNDTLGHAMGDLLLQRVAQRL 349 Query: 240 NTLQQNGEVIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYPGASL 298 + + + RLGGDEF+V+ ++ D ++ ++I + + L + S+ Sbjct: 350 LECVRASDTVARLGGDEFVVLLEARQDTDHPHAVAQKILEAFVQPFDLEGRHVPMW-PSI 408 Query: 299 GIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVA 335 GI D + L+ AD AMY KK +A Sbjct: 409 GIATYPDHGADENLLLNHADAAMYLSKKSGGNQVRMA 445 >UniRef50_A1KA22 GGDEF/EAL/PAS/PAC/GAF-domain containing protein n=1 Tax=Azoarcus sp. BH72 RepID=A1KA22_AZOSB Length = 1006 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 80/345 (23%), Positives = 144/345 (41%), Gaps = 26/345 (7%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEAR-LQHIMFARNSQK 61 D + R Q + + ++V E +T+ + + VD E R ++ A Sbjct: 412 DFALDRFEQDAERARLAAAIVDS-EEKYRELTESINDVIWTVDPETRCFSYVSPAMRRLS 470 Query: 62 MYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGIT-----TFLSTPIHL 116 Y P + L K + E+ +R +A ++G + + Sbjct: 471 GYAPHELIDAPIERLLKP------EYVAEMRERMALHLAEFHVGKRKSEDYSVEEVELGR 524 Query: 117 PDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYT 176 DG GT+ A + R+ +V ++ + + R A A + ++ Sbjct: 525 RDG---GTVWAEVVTTLGLNRRSGRV---------EFRAVARDISERRAAEAEIQRLAHY 572 Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 D LTGLPNR + + SL + ++ + F DLD+FK IND GH+ GD L++V Sbjct: 573 DQLTGLPNRSLVKDRFRYAASLTQRRRGQLAVMFFDLDHFKNINDTLGHDFGDRLLVEVA 632 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGA 296 RL ++ + G+ + RLGGDEF+ + + + + + ++ + + L +L Sbjct: 633 RRLESVLRGGDTVCRLGGDEFVFLLPDTDAEGAARVAAKLLEAVAQPLVLDHQEL-TVTP 691 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 S+GI + TD D+ AD AMYQ K+ + A+ + Sbjct: 692 SIGIAMYPDDGTDFDTLSRNADAAMYQAKREGRNGFRFFTEAMQA 736 >UniRef50_C6P5X9 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P5X9_9PROT Length = 927 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 105/229 (45%), Gaps = 11/229 (4%) Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIA 172 +G ++G + +KR+ E ++L + G I +++ + + ++ + Sbjct: 445 EGYWHGEVW----DKRKNGEEYIKLLTINVIRDDDGAIYRHVALFTDITERKKVEELIWR 500 Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 Q+ DSLT LPNR+ + L A + + IDLD FK +ND GH+ GD+ L Sbjct: 501 QANYDSLTKLPNRQMFHDRLEQEAKKAHRAGLSMALLLIDLDRFKEVNDTLGHDKGDILL 560 Query: 233 IQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDL 291 I+ R++ + + + RLGGDEF+V+ E+ A I + + I + + L D + Sbjct: 561 IEAARRISACVRESDTVARLGGDEFIVILSELEDMASIDRVAQDILGSLAEPFKL-DAEP 619 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 Y AS+GI + T+ D AD AMY K + + Sbjct: 620 AYISASIGISLYPNDATELDVLFKHADQAMYVAKYAGRNRFNYFTKDMQ 668 >UniRef50_Q2SF23 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SF23_HAHCH Length = 637 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 57/208 (27%), Positives = 98/208 (47%), Gaps = 2/208 (0%) Query: 135 WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTT 194 W + + Y+ V +L+EAN + + DSLTGL NRR + L Sbjct: 167 WWAVTVSTVCDSDNTVTNYVISGVDVSELKEANRKMQQMALYDSLTGLANRRLFVDRLEQ 226 Query: 195 LFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGG 254 A +I + F+DLD FK IND GH++GD L V +RL + + + RLGG Sbjct: 227 AVKAASRDRKQIALLFLDLDQFKRINDTLGHDAGDSLLQTVAQRLKNCVRAKDTVARLGG 286 Query: 255 DEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSA 313 DEF V+ + + ++ + +I + ++ L ++ S+G+ + +AD Sbjct: 287 DEFTVLLTDIVDTFSVTPVATQILKALKEPIKLKKHEV-IVSTSIGVTLAPTDGANADVL 345 Query: 314 LHAADIAMYQEKKHKQKTPFVAHPALHS 341 + AD+A+Y+ K+H + L++ Sbjct: 346 MKNADLALYRAKEHGRDRYHFYTEELNA 373 >UniRef50_Q47A14 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Dechloromonas aromatica RCB RepID=Q47A14_DECAR Length = 827 Score = 278 bits (711), Expect = 3e-73, Method: Composition-based stats. Identities = 61/195 (31%), Positives = 95/195 (48%), Gaps = 2/195 (1%) Query: 147 AGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKI 206 +GL A Y+ A + + ++A + + D+LTGLPNR A+ L L AR + Sbjct: 371 SGLPAHYVWILADITERKQAEDRMRHIAQHDALTGLPNRLALLMRLAQLLPEARRHGWTV 430 Query: 207 MIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NE 265 + FIDLD FK+IND GH GD L +V RL+ L + + + RLGGDEF+++ + + Sbjct: 431 AVMFIDLDRFKIINDTLGHQVGDEMLREVACRLSNLLRETDFVARLGGDEFVIILPSISS 490 Query: 266 NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 AD + + +I + +L+ S+GI + D D L AD AMY K Sbjct: 491 PADAAIVSGKIISALSTAIEAEGHELH-TSPSIGISIFPDDGPDGDIVLKNADTAMYHAK 549 Query: 326 KHKQKTPFVAHPALH 340 + ++ Sbjct: 550 AAGRNNYQFFAADMN 564 >UniRef50_Q0F103 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) and Response Regulator n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F103_9PROT Length = 719 Score = 278 bits (711), Expect = 3e-73, Method: Composition-based stats. Identities = 81/338 (23%), Positives = 146/338 (43%), Gaps = 25/338 (7%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 + +Q + + Q E+ +R++ E L + + + D+ + N + Sbjct: 125 LENQRLQDFQAMHQRLQESEAQIRKVNERLNFLLTSTAAVIYASDISEHYATTFISDNIE 184 Query: 61 KM--YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPD 118 ++ Y FT D+ L C D++ + A + G + F D Sbjct: 185 RLSGYPANTFTAEADFRL-------ECVHPDDLAMVRNELKLALDRGSSRF-EYRFQHKD 236 Query: 119 GSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDS 178 G ++ E R R Q+ +++ A + + ++ +I +YTD Sbjct: 237 GHYFWV----GDEVRVEKNRHGQL---------EFLGFMADISEHKQNEEKVIQMAYTDL 283 Query: 179 LTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGER 238 LTGLPNR F+ L + + + + + F+DLD FK IND GH GD LI+VG+R Sbjct: 284 LTGLPNRSLYFDRLKQAIAQSHRNHTTMAVLFMDLDYFKPINDELGHEWGDQALIEVGKR 343 Query: 239 LNTLQQNGEVIGRLGGDEFLVVSLNNENADIS-SLRERIQQQIRGEYHLGDVDLYYPGAS 297 L + + + R+GGDEF ++ + + + + ++I I+ L + Y G S Sbjct: 344 LQGCIRETDTLARIGGDEFSIILGDIASEQAACRIADKIISCIQEPMLL-NHSSYVLGIS 402 Query: 298 LGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVA 335 +GI + +DA++ + AD AMYQ K+ + V Sbjct: 403 IGIRIESSDYSDAETFMRLADDAMYQAKEAGRNRCCVY 440 >UniRef50_B9Z8G8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z8G8_9NEIS Length = 887 Score = 278 bits (711), Expect = 3e-73, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 97/225 (43%), Gaps = 1/225 (0%) Query: 116 LPDGSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 L G + G L + + + ++ G QY+ + QL+++ L + Sbjct: 396 LASGRWEGELWHRKRDGTPFPLWLSISCVRDEQGRPRQYVFVFNDISQLKDSQEQLERLA 455 Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 + D LTGLPNR L AR + + FIDLD FK IND GH +GD L+ Sbjct: 456 HYDPLTGLPNRHLALARLEHALERARRHAFPLAVMFIDLDRFKTINDSLGHQAGDELLVA 515 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYP 294 + +RL+ + + + RLGGDEFLVV ++S+ + + + + Y Sbjct: 516 IAQRLHQRLRQEDTLARLGGDEFLVVIEEAPVQQVASIAHALLKVVDQPFGFSGGGEAYV 575 Query: 295 GASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 GAS+GI + A + AD AMY K +L Sbjct: 576 GASIGISLYPGDGRSASELIRNADAAMYLAKAQGSNAYRFYTESL 620 >UniRef50_A0L7S5 Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L7S5_MAGSM Length = 571 Score = 278 bits (711), Expect = 3e-73, Method: Composition-based stats. Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 3/221 (1%) Query: 118 DGSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYT 176 G++ G + ++ E + +++ I+ YI + + + A L Q++ Sbjct: 344 QGNWQGEIWRRRKNGEEFPEWLSLSIIRGENQQISHYIGLFSDITTRKIAEEKLKHQAHH 403 Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 D LTGLPNR + + L S AR KI + +IDLD+FK +ND +GH +GD L ++ Sbjct: 404 DPLTGLPNRSLLEDRLQQAVSKARRYEGKIAVLYIDLDHFKPVNDNYGHEAGDAVLREIS 463 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYPG 295 R+ + + R+GGDEF+ V + + +++ I+ + G+ + + G Sbjct: 464 ARIRYELRQSDTAARVGGDEFVAVLTEIREEHLVMGVAQKLIHAIQKPVNFGN-ESFQVG 522 Query: 296 ASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAH 336 S+GI L +AD AMY+ K+ + VA Sbjct: 523 CSIGISLYPIHGNSITKLLKSADTAMYRAKQEGRNRFCVAT 563 >UniRef50_Q7NTV0 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NTV0_CHRVO Length = 1390 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 60/220 (27%), Positives = 102/220 (46%), Gaps = 3/220 (1%) Query: 121 FYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSL 179 + G L ++E + V++ G + YI + + QL++ A L ++ D L Sbjct: 898 WRGELWNRRKSGELYAELLSISVVRDEQGQVQHYIGIFSDITQLKQHEAELDRVAHYDPL 957 Query: 180 TGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERL 239 TG+PNRR + + L A + F+DLD FK +ND++GH GD L+ V L Sbjct: 958 TGVPNRRLLSDRLRQAIVRANRSGRSCAVCFLDLDGFKAVNDKYGHAVGDQLLVTVSNNL 1017 Query: 240 NTLQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASL 298 ++ + + + RLGGDEF+V+ + + +R+ +GD ++ AS+ Sbjct: 1018 KSILRGDDTLARLGGDEFVVLLSEVGSPEECMLVLDRVLATASRPMPVGDAEVGV-TASI 1076 Query: 299 GIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPA 338 G+ + D D+ L AD AMY K + + P Sbjct: 1077 GVSLYPQDNVDPDTLLRHADQAMYLAKDAGKNRYQLFDPE 1116 >UniRef50_Q31G31 Diguanylate cyclase/phosphodiesterase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31G31_THICR Length = 891 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 64/198 (32%), Positives = 103/198 (52%), Gaps = 5/198 (2%) Query: 143 LQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHL 202 + I Y+ + EQL++ L +Y D LT LPNR + LT A+ Sbjct: 433 VIQLGHEITNYLDIQ---EQLQQQKNDLDFIAYHDPLTDLPNRILFLDRLTQAIHQAQRN 489 Query: 203 NHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSL 262 + K+ + FIDLD FK IND FGH SGDL LI+ G+RL + + + RLGGDEF ++ Sbjct: 490 HDKVALLFIDLDRFKEINDSFGHASGDLVLIECGKRLKKAIREIDTVARLGGDEFTILID 549 Query: 263 NNENADI-SSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAM 321 + ++ ++ ++I + + + + ++++ AS+GI + TDA+ L AD AM Sbjct: 550 ELKTNNVIINVVKKIIKTLSDPIFVNE-NIFHITASIGISIFPNDGTDANQLLQNADAAM 608 Query: 322 YQEKKHKQKTPFVAHPAL 339 YQ K+ + T + Sbjct: 609 YQAKEDGKNTYHFYTKEM 626 >UniRef50_C6XCZ6 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XCZ6_METSD Length = 869 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 105/234 (44%), Gaps = 11/234 (4%) Query: 114 IHLPDGSFYGTLCAASSEKRQWSERAEQVLQL-----FAGLIAQYIQKEALVEQLREANA 168 + +G + G + +R+ E + L + G + + + + + + ++ Sbjct: 383 LLDSNGKWQGEVW----NRRKNGESYAEWLTIDTIYNEHGEVIRRVALFSDITKNKQNQE 438 Query: 169 ALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSG 228 + Q+ D LTGLPNRR + + L A + + + F+DLD FK +ND +GH G Sbjct: 439 VIWRQANFDQLTGLPNRRMLHDRLNQEILKADRNHQMLAVLFLDLDRFKEVNDTYGHLMG 498 Query: 229 DLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISS-LRERIQQQIRGEYHLG 287 D L + RL + + + RLGGDEF+V+ ++ D+ + + I ++ + L Sbjct: 499 DQLLQESAHRLLHSVRECDTVARLGGDEFVVILSGLQDKDVVQDIAQSILKKFDTPFQL- 557 Query: 288 DVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 D DL + S+GI + + AD AMY K + + ++ + Sbjct: 558 DNDLTHVSVSIGITIYPEDGNAGEVLFKNADQAMYVAKNNGRNRYSYFTASMQA 611 >UniRef50_C6P1A0 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P1A0_9PROT Length = 1011 Score = 277 bits (710), Expect = 4e-73, Method: Composition-based stats. Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 8/229 (3%) Query: 119 GSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 G + G + + E ++ G + Y+ + + + + ++ D Sbjct: 525 GEWEGEIWNRRKNGDVYPEHLTITAVKDAGGNVVNYVATLMDITASKASEEEIRNLAFFD 584 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 LT LPNRR + + L + I FIDLDNFK +ND GH+ GDL L +V Sbjct: 585 PLTRLPNRRLLQDRLQQALASCGRSGKSGAILFIDLDNFKNLNDTLGHDIGDLLLEKVAI 644 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNNEN------ADISSLRERIQQQIRGEYHLGDVDL 291 RL++ + G+ + R+GGDEF+V+ + + S+ +I + Y L + Sbjct: 645 RLSSCVREGDTVARIGGDEFVVMLEDLSDNILDAAEQTESVGSKILASLNVPYQL-GIHT 703 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 Y S+G + D L ADIAMYQ KK + T P + Sbjct: 704 YDNSPSIGATLFNDNHNSIDELLKQADIAMYQAKKAGRNTMRFFDPRMQ 752 >UniRef50_C7RS23 Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor n=2 Tax=Betaproteobacteria RepID=C7RS23_9PROT Length = 439 Score = 277 bits (710), Expect = 4e-73, Method: Composition-based stats. Identities = 60/236 (25%), Positives = 100/236 (42%), Gaps = 18/236 (7%) Query: 117 PDGSFYGTLCAASSEKRQWSER---------------AEQVLQLFAGLIAQYIQKEALVE 161 D +FY + A + WS + G I ++ + + Sbjct: 196 QDAAFYQRMWATILAGQVWSGELVNRRKDGSVYDEALTISPVTDMNGRIQHFVAIKQDIS 255 Query: 162 QLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLIND 221 + + + ++ D LT LPNR + + L + AR + + F+DLD FK +ND Sbjct: 256 ERKVTEERVQHLAHHDQLTDLPNRALLSDRLAQAVAQARRDRGTLALMFLDLDQFKPVND 315 Query: 222 RFGHNSGDLFLIQVGERLNTLQ-QNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQ 279 GH+ GDL L +V RL + + + + RLGGDEF+++ + AD + +I Sbjct: 316 TLGHDVGDLLLKEVALRLQSCVPRESDTVSRLGGDEFVILLAQMDKAADAVVVAGKILAA 375 Query: 280 IRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVA 335 ++ + +G ++ ASLGI D + L AD AMY KK + Sbjct: 376 LQRPFAIGPHEIGI-SASLGIAVYPQHGEDVNRLLKNADTAMYHAKKAGRNCYRFF 430 >UniRef50_C6P0P9 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P0P9_9PROT Length = 1080 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 110/234 (47%), Gaps = 16/234 (6%) Query: 119 GSFYGTLCAASSEKRQWSERAEQVLQLF-----AGLIAQYIQKEALVEQLREANAALIAQ 173 G++ G + ++R+ E + + + G QY+ + + + ++A + Sbjct: 837 GTWAGEIW----DRRKSGEIYPKWMNITVVKNDRGETTQYVSIFSDITERKKAEDEIRNL 892 Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 ++ D LT LPNRR E T + + I F+DLD FKL+ND+FGH+ GDL L+ Sbjct: 893 AFYDPLTLLPNRRLFLERFHTALAASARYGDFGSILFLDLDRFKLLNDKFGHDYGDLLLV 952 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSL--NNENADISS----LRERIQQQIRGEYHLG 287 +V R+ + + + R GGDEF+V+ +++ + + + E+I+ + Y L Sbjct: 953 EVASRIKACVREIDTVARFGGDEFVVLLESISSDREEAAHKSGVVAEKIRDALSRPYRLK 1012 Query: 288 DVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 +++ Y S+GI D L AD AMYQ K + P + S Sbjct: 1013 ELE-YRCSPSIGISLYHGNDDSMDVLLKYADAAMYQAKDAGRNNVRFYDPEMQS 1065 >UniRef50_C6P1Y8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P1Y8_9PROT Length = 812 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 53/230 (23%), Positives = 111/230 (48%), Gaps = 8/230 (3%) Query: 118 DGSFYGTLCAASSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYT 176 +G + G + +++ +L+ G + +++ + + + + ++ + + Q+ Sbjct: 319 EGHWQGEIWDKRKTGEIYAKLAHISILRRSDGGVYRHVAQFSDITEKKQKDELIFWQANY 378 Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 D+LT LPNRR + + L + + + F+DLD FK +ND GH GD+ L++V Sbjct: 379 DALTCLPNRRLLNDRLAHALAANKRNEDCGALMFLDLDKFKTLNDTLGHAYGDMLLVEVA 438 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSLN------NENADISSLRERIQQQIRGEYHLGDVD 290 R+ + + + + R+GGDEF+V+ N + + + E+I+ + Y L D Sbjct: 439 RRIKSCVREVDTVARIGGDEFVVLLENLGADIKDATQAAAHIAEKIRASLSTPYQLHD-K 497 Query: 291 LYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 +++ S+G+ + A+ + AD+AMYQ K+ + P + Sbjct: 498 MHHSSPSIGVSLIHCNGESAEELIKQADMAMYQAKEAGRNAVRFFDPQMQ 547 >UniRef50_C6X9G9 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6X9G9_METSD Length = 984 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 3/226 (1%) Query: 116 LPDGSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 +G + G Q++E + G + Y+ A + +++ + + L Sbjct: 494 TREGRWRGEFWNQRKNNEQYAEWVTLTAVNNEEGKVINYVGVFADISEIKHSQSRLNELV 553 Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 D LTGLPNRR + E L A ++I + F+DLD FK IND GH GD L + Sbjct: 554 NRDPLTGLPNRRLMHELLDHAIKYAEREQNEIALLFVDLDRFKAINDTLGHQMGDKLLFE 613 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVVSL-NNENADISSLRERIQQQIRGEYHLGDVDLYY 293 V +R+ ++ + + RLGGDEF+V+ E D + + ++I ++ E+ + +L+ Sbjct: 614 VSQRIRAAVRDSDAVARLGGDEFIVMMDVLREREDAAKVAKKIISSLQNEFLIDGRELFI 673 Query: 294 PGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 AS+GI ++ D D + AADIAMYQ K + L Sbjct: 674 -SASVGISVYPDDSLDVDGLIKAADIAMYQVKNKGKNNHCFYSADL 718 >UniRef50_Q609J7 Sensory box protein n=1 Tax=Methylococcus capsulatus RepID=Q609J7_METCA Length = 712 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 67/187 (35%), Positives = 95/187 (50%), Gaps = 2/187 (1%) Query: 155 QKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLD 214 + Q REA + ++ D LT LPNR + L LAR +++ + FIDLD Sbjct: 264 GAFRDITQRREAEDRIKHLAHHDPLTNLPNRVFLHGRLEQAIELARREQNQVAVMFIDLD 323 Query: 215 NFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADI-SSLR 273 NFK IND GH GD L QV RL +V+GRLGGDEF+VV N + +++ Sbjct: 324 NFKRINDTLGHRIGDALLEQVAARLTENVPGSQVVGRLGGDEFIVVITGNRVSTTSAAMA 383 Query: 274 ERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPF 333 ERI + + Y + D L+ GAS+GI + A++ + AD AMY K + T Sbjct: 384 ERILESLCRPYTVEDYQLH-SGASIGIAIYPADGNSAETLMKHADAAMYHAKSRGRNTFE 442 Query: 334 VAHPALH 340 A++ Sbjct: 443 FFSQAIN 449 >UniRef50_C7RJ77 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RJ77_9PROT Length = 1399 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 1/222 (0%) Query: 119 GSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDS 178 G + G + + + E G YI + Q +EA A++ ++ D+ Sbjct: 919 GHWQGEIWNRRKDGSVYPEWLLISRVDGDGAPTHYIGTFIDITQHKEAEASIQRLAHFDA 978 Query: 179 LTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGER 238 LTGLPNR + E + + A + + F+DLD FK +ND GH GD LIQV ER Sbjct: 979 LTGLPNRSLLEERVRHDLARAHRGREALALMFVDLDRFKNVNDSLGHRVGDALLIQVAER 1038 Query: 239 LNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASL 298 L ++ + + RLGGDEF+VV + + + + ++ + + Y + +L S Sbjct: 1039 LRRAVRDEDTVSRLGGDEFIVVLPSTDADGAAHVAAKLLEVMAPAYRIEQHEL-TCSLSA 1097 Query: 299 GIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 GI + ++ +AD AMY+ K+ + + Sbjct: 1098 GIAMYPADGESFEALSMSADTAMYRAKQSGRNAYCFFTAEMQ 1139 Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 66/187 (35%), Gaps = 19/187 (10%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQH----------- 52 I R A + E LV+ E+ ++++ + + + A L+ Sbjct: 523 NITDRKRAEAALLRRSEQLVQLSAASQEINSELDIPVILRQLIAAALKVTGAGGGAAARI 582 Query: 53 ----IMFAR-NSQKMYIPENFTVSWDYSLCKRAIDENCFF--SDEVPDRWGDCIAARNLG 105 ++FA N +P ++ S Y + R + F +D D W + +G Sbjct: 583 AGGQMVFAEYNRGGQLLPVDYRFSPGYGVPGRVMQTRSFHLSNDAEHDPWVIPEIRQAIG 642 Query: 106 ITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLRE 165 L PI G G ++ + + ++L A A ++ AL+ + R+ Sbjct: 643 FDCLLDMPIISRHGELLGCF-EIHNKPGGFGDGDVRLLHGLAASAAVALENSALLAERRQ 701 Query: 166 ANAALIA 172 AL Sbjct: 702 VEQALRE 708 >UniRef50_C6P6X8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P6X8_9PROT Length = 713 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 66/217 (30%), Positives = 99/217 (45%), Gaps = 21/217 (9%) Query: 144 QLFAGLIAQYIQKEALVEQL-------REANAALIA-------QSYTDSLTGLPNRRAIF 189 + +G + + + +L + ANA L Q+ +D LTGLPNRR + Sbjct: 235 RDSSGRLTSVLAIGRDITELYESRAALKRANAQLENMNDLLQSQATSDPLTGLPNRRFML 294 Query: 190 ENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVI 249 + L + + + + FIDLDNFK +ND GH+ GD L QV RL T + G+ + Sbjct: 295 DRLKHALASSSRSGREGALLFIDLDNFKTLNDTLGHDVGDQLLQQVAHRLETCVREGDTV 354 Query: 250 GRLGGDEFLVVSLNNENADISSLR------ERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 RLGGDEF+V+ + D+ + E+I + Y LG + Y S+G Sbjct: 355 ARLGGDEFVVMLEDLSEKDLEAAAQTEAVGEKILAALNQPYQLGKHE-YRNTPSIGATLF 413 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + D L ADIAMYQ K+ + P + Sbjct: 414 NDHQQSLDELLKQADIAMYQAKRAGRNALRFFDPQMQ 450 >UniRef50_B5E7Y8 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=4 Tax=Geobacter RepID=B5E7Y8_GEOBB Length = 704 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 56/197 (28%), Positives = 95/197 (48%), Gaps = 14/197 (7%) Query: 158 ALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFK 217 + + + A + +Y D+LTGLPNRR + L A + + + F+DLD FK Sbjct: 250 QDITERKRAEEQIRLLAYYDALTGLPNRRFFLQQLEQALVFANRYDRMLAVLFLDLDRFK 309 Query: 218 LINDRFGHNSGDLFLIQVGERLNTLQQNGE------------VIGRLGGDEFLVVSLNNE 265 L+ND GH GD L V +RL + G+ ++ RLGGDEF ++ + E Sbjct: 310 LVNDTLGHGVGDRLLQDVADRLLRCVRRGDCLARADEECPPSLVSRLGGDEFTIMLSDIE 369 Query: 266 N-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQE 324 + D++ + RI + + Y L +++ S+GI + T A + AD AMYQ Sbjct: 370 HFQDVAKIARRILEAVSVPYSLEGQEVFV-STSIGISLYPFDATTASDLIRNADGAMYQA 428 Query: 325 KKHKQKTPFVAHPALHS 341 K+ + + ++++ Sbjct: 429 KEQGRNGYQIYDESMNA 445 >UniRef50_C5V280 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V280_9PROT Length = 725 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 73/246 (29%), Positives = 106/246 (43%), Gaps = 22/246 (8%) Query: 117 PDGSFYGTLCAASSEKRQWSER---------------AEQVLQLFAGLIAQYIQKEALVE 161 D FY + QWS ++ F G + Y+ + + Sbjct: 210 HDADFYAAMWQCIKNTGQWSGEIWDRRKNGEIYPKWLTITEVKSFDGSVVHYVSSQVDIT 269 Query: 162 QLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLIND 221 + + + ++ D LT LPNRR + + L S + + + FIDLD FK IND Sbjct: 270 ARKASEDRIHNLAFYDPLTQLPNRRLLLDRLRHSVSFSLRDGRHVALMFIDLDKFKKIND 329 Query: 222 RFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVS------LNNENADISSLRER 275 GH+ GDL L QV ER T + + + RLGGDEF+V+ L+ A + + Sbjct: 330 TLGHDIGDLLLKQVAERTLTCVRTCDTVARLGGDEFVVLLDGLAGNLHEAAAQAKQIGRK 389 Query: 276 IQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVA 335 I + Y L + Y GAS+GI D A+ L ADIAMYQ KK + T Sbjct: 390 IIDTLNQSYDLAGHE-YQSGASIGIALFDEHCQTAEDLLKQADIAMYQAKKAGRNTLRFF 448 Query: 336 HPALHS 341 P + + Sbjct: 449 DPEMQA 454 >UniRef50_C0QQF1 FOG: EAL domain protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QQF1_PERMH Length = 784 Score = 277 bits (709), Expect = 5e-73, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 101/226 (44%), Gaps = 11/226 (4%) Query: 119 GSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIAQ 173 G + G KR+ E + G + YI + + L Sbjct: 563 GEWQGEFWG----KRKNGESFPMWFTFISARGNRGQVINYILIITDITNRKIEEKKLKKL 618 Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 ++ D LTGLPNR + L AR + + F+DLD FK +ND +GH+ GD L Sbjct: 619 AFYDGLTGLPNRLLFYNRLQHTLLRARRNREYVAVMFLDLDGFKQVNDTYGHDIGDELLK 678 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLY 292 +VG+RL + + + RL GDEF V+ N N +++ + ++I + + + + Sbjct: 679 EVGKRLQHTVRKIDTVARLAGDEFTVIIENLNSPENVNVIAKKILNSFKEPFVINGNKIN 738 Query: 293 YPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPA 338 G S+GI + TDAD+ + AD+AMY KK + V + Sbjct: 739 V-GTSIGIAVFPLDGTDADTLIKNADMAMYLAKKSGKNRYVVYTKS 783 >UniRef50_B2UJT5 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=6 Tax=Ralstonia RepID=B2UJT5_RALPJ Length = 652 Score = 277 bits (709), Expect = 5e-73, Method: Composition-based stats. Identities = 59/181 (32%), Positives = 90/181 (49%), Gaps = 1/181 (0%) Query: 159 LVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKL 218 + Q+REA + + D+LTGL NR A+ + L +L R ++ + F+DLD FK Sbjct: 201 DITQIREAQQRIRHLATHDTLTGLLNRSALEDRLEHALALGRRNRSRVSVMFLDLDRFKN 260 Query: 219 INDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQ 278 +ND GH GD+ L +V RL + + + RLGGDEF+V+ + + + ERI Sbjct: 261 VNDTLGHQFGDMLLREVAARLQACAREADTVARLGGDEFVVMLESLDAMGTRRVAERILS 320 Query: 279 QIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPA 338 I +H+ +LY G S+GI + D + L AD AMY K+ + Sbjct: 321 AIGAPFHIEGQELY-LGVSIGIAVAPRDGDDPHTLLRKADAAMYLAKERGRNNFQTFTSD 379 Query: 339 L 339 L Sbjct: 380 L 380 >UniRef50_Q15V87 Diguanylate cyclase/phosphodiesterase n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15V87_PSEA6 Length = 1524 Score = 277 bits (709), Expect = 5e-73, Method: Composition-based stats. Identities = 73/281 (25%), Positives = 125/281 (44%), Gaps = 13/281 (4%) Query: 67 NFTVSWDYSLCKRA-IDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG-- 123 ++ + + C IDE + ++ + D + G+ +F S L + Sbjct: 990 TVPMAANQAFCNTFNIDEQQDIASQLKLVYDD----QQAGLLSFWSKLESLEASEDWRGE 1045 Query: 124 -TLCAASSEKRQWSERAEQVLQLFAGL--IAQYIQKEALVEQLREANAALIAQSYTDSLT 180 + + E R + + + I Y+ + + + ++A ALI + D+LT Sbjct: 1046 DQIMLQNEEVRDVL-VYIKAVACINDVTDIDSYLIILSDISEHKKAQQALIKLANFDALT 1104 Query: 181 GLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLN 240 GLPNR + + + A+ + + FIDLD FK +ND GHN+GD L ++ RL Sbjct: 1105 GLPNRALLLDRVDHAIYQAQRSASTLGLFFIDLDKFKQVNDSLGHNAGDTLLQEISARLL 1164 Query: 241 TLQQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLG 299 L + + I RLGGDEF+V+ N D++ L +I + I L + L +S+G Sbjct: 1165 NLLRKEDTIARLGGDEFVVLIENVHTIDDLTHLASQIIEIIDTPVQLENH-LVSVSSSIG 1223 Query: 300 IVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 I + DA L ADIAMY K++ + ++ Sbjct: 1224 IALYPDDAQDAQELLQNADIAMYHAKENGRSHFQFFTAKMN 1264 >UniRef50_A4U4T7 Two-component sensory box protein n=3 Tax=Magnetospirillum RepID=A4U4T7_9PROT Length = 828 Score = 277 bits (708), Expect = 5e-73, Method: Composition-based stats. Identities = 57/230 (24%), Positives = 109/230 (47%), Gaps = 3/230 (1%) Query: 114 IHLPDGSFYGTLCAASSEKRQWSERA-EQVLQLFAGLIAQYIQKEALVEQLREANAALIA 172 + L DG + G + + ++ V++ G + ++ + + ++ L Sbjct: 330 VLLRDGKWQGEIWDRRKDGEMFAGWQNIAVVRDTDGKVQNFVAVISDITTRKQVEERLSY 389 Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 + D LT LPNR E LT + A ++ + + FIDLD FK +ND GH +GD+ L Sbjct: 390 AANHDPLTRLPNRTLFQERLTRAIARASRNHNLVALLFIDLDRFKQVNDTMGHLAGDMLL 449 Query: 233 IQVGERLNTLQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDL 291 QV ERL++ + G+ + RL GDEF ++ + + D + + ++ + ++ L + Sbjct: 450 QQVAERLSSCIRQGDTVARLSGDEFTIILEDVQDPRDAAVVGHKVLRLLQEPVALTGGEA 509 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + S+G+ + D + L AD AMY+ K + + A+++ Sbjct: 510 HISS-SIGVSLYPTDAGDPQTLLKLADAAMYRAKHLGRNSCQFHSEAVNA 558 >UniRef50_C7RS22 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RS22_9PROT Length = 1006 Score = 277 bits (708), Expect = 6e-73, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 109/231 (47%), Gaps = 8/231 (3%) Query: 118 DGSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYT 176 +G + G + + E ++ G++ Y+ + + A + ++ Sbjct: 520 NGVWQGEIWNRRKNGDVFPEWLTISSVRDGDGVVTHYVSALTDMSAHKAAQEEIRHLAFY 579 Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 D+LTGLPNRR + + L + + + + FIDLDNFK +ND GH+ GD L QVG Sbjct: 580 DALTGLPNRRLLHDRLRVAIASSVRSERQGALLFIDLDNFKTLNDTLGHDMGDRLLQQVG 639 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSLN--NENADISS----LRERIQQQIRGEYHLGDVD 290 +RL++ + G+ + RLGGDEF+V+ N + + + E+I + + Y L D Sbjct: 640 QRLSSSVREGDTVARLGGDEFVVMLENLGERPEEAAGQSRIVGEKIIKLLNRPYDLSGHD 699 Query: 291 LYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 Y+ S+GI + D + AD+AMY+ K + P + + Sbjct: 700 -YHNTPSVGITLFGGQQVGIDELMKRADLAMYEAKASGRNALRFFDPRMQA 749 >UniRef50_A1K5Q6 GGDEF/EAL/PAC/PAS-domain containing protein n=1 Tax=Azoarcus sp. BH72 RepID=A1K5Q6_AZOSB Length = 828 Score = 276 bits (707), Expect = 7e-73, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 106/227 (46%), Gaps = 11/227 (4%) Query: 119 GSFYGTLCAASSEKRQWSERAEQVL-----QLFAGLIAQYIQKEALVEQLREANAALIAQ 173 G + G + +R+ E Q L + G ++ Y+ + + Q+++A + L Sbjct: 326 GQWQGEIW----NRRKTGEVYPQWLTIGTVRDDEGEVSNYVAVFSDISQIKDAQSQLERL 381 Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 ++ D LTGLPNR + + L S AR + + F+DLD FK +ND GH +GD L Sbjct: 382 AHYDPLTGLPNRALLGDRLAHAISRARRAGTSVAVLFLDLDGFKNVNDSLGHPAGDRLLQ 441 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADI-SSLRERIQQQIRGEYHLGDVDLY 292 + ERL ++ + R GGDEF VV + + S + E + +I L + Sbjct: 442 IIAERLCGALRSEGSVSRFGGDEFAVVLEDVVRGEAVSEVAEHLIAEIARPLDLDGHGAH 501 Query: 293 YPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 AS+GI + DA + + AAD AMY+ K + T H + Sbjct: 502 V-SASIGIALFPRDGDDATTLIKAADTAMYRSKALGRNTFSFHHEDM 547 >UniRef50_B3PHI4 Sensory box/GGDEF family protein n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PHI4_CELJU Length = 595 Score = 276 bits (707), Expect = 7e-73, Method: Composition-based stats. Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 2/194 (1%) Query: 147 AGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKI 206 G + + + +++ + + DSLT LPNR + L AR ++ Sbjct: 127 TGKTIGLVGIGRDITERKQSEEQIQYLATHDSLTALPNRFMFSKLLAVAIESARRHQRQL 186 Query: 207 MIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN 266 + FIDLD FK IND GH++GD LI + R T + +++GRLGGDEF+++ E+ Sbjct: 187 AVLFIDLDRFKNINDTLGHDAGDQLLITMANRFRTCLRTSDIVGRLGGDEFVILLPELES 246 Query: 267 AD-ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 D + + ++I + + AS+GI + D + + ADIAMY+ K Sbjct: 247 HDQAARVAQKILSAAIQPLDVHGQECRV-TASIGICLYPEDAEDEQALMKNADIAMYRAK 305 Query: 326 KHKQKTPFVAHPAL 339 + + P L Sbjct: 306 EEGKNNYQFYSPDL 319 >UniRef50_A0RLD3 Diguanylate cyclase/phosphodiesterase n=79 Tax=cellular organisms RepID=A0RLD3_BACAH Length = 910 Score = 276 bits (707), Expect = 7e-73, Method: Composition-based stats. Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 2/186 (1%) Query: 155 QKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLD 214 + L E + ++ D+LTGLPNRR ++L + + A+ + + + F+DLD Sbjct: 463 GIARDITTLYEKQKQVEHLAFHDALTGLPNRRKFEKDLKNILNTAQASANDVAVMFLDLD 522 Query: 215 NFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNN-ENADISSLR 273 FK INDR GH GDL LI+V +RL ++ +V+ R GGDEF ++ + + + Sbjct: 523 RFKKINDRLGHGIGDLLLIEVAKRLRGCLRSKDVVARQGGDEFTILLPDMYSEKSAAFIA 582 Query: 274 ERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPF 333 E+I + + + D +L S+GI TD + AD+AMY+ K + + Sbjct: 583 EQILNILNKPFFIKDEELSI-TPSIGIAMYPDCGTDVTELMKNADMAMYRAKANGKNRFV 641 Query: 334 VAHPAL 339 + Sbjct: 642 FFSKEM 647 >UniRef50_A0LD38 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LD38_MAGSM Length = 834 Score = 276 bits (706), Expect = 9e-73, Method: Composition-based stats. Identities = 79/359 (22%), Positives = 145/359 (40%), Gaps = 48/359 (13%) Query: 2 SDQIIARVSQSLAKEQSLESLVRQLLEMLEM------------VTDMESTYLTKVDVEAR 49 D++ A V+Q A ++ ++Q +M+E V + S + D R Sbjct: 223 HDKLEATVAQRTAALKTSNEQLKQ--QMIEREQAQHRLRLTAGVFENTSEAIIITDAANR 280 Query: 50 LQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTF 109 + + A Y P + + D K + F+++ W Sbjct: 281 VMEVNPAFVRITGY-PADEVIGRDPGFMKSHRHTHEFYAEMWKKIWQT------------ 327 Query: 110 LSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLR 164 G + G + ++R E + L + A G + I + + +L+ Sbjct: 328 ---------GQWQGEIW----DRRHNGEIYPKWLTINAVYDERGHLVNCIGIFSDISRLK 374 Query: 165 EANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFG 224 L ++ D LT LPNR L + A +K+ + FIDLD+FK IND G Sbjct: 375 ATEERLEQLAFFDCLTKLPNRAHFQSRLDHALTAANRRQNKVGLIFIDLDHFKHINDSMG 434 Query: 225 HNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISS-LRERIQQQIRG 282 HN+GD LI+ +R+ + + + + R+GGDEF ++ + + A + + + I + Sbjct: 435 HNAGDQLLIEAAKRIQSCVREEDTVARMGGDEFTIILADLTDTAKVMTNVALTILESFTH 494 Query: 283 EYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 L D L+ G SLG+ ++ +A + AD AMY+ K+ + +++ Sbjct: 495 PIVLEDKKLFI-GCSLGMAIYPDDSGNAALLIKHADTAMYRAKESGRNRYSFYTAEMNA 552 >UniRef50_C5S8G6 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S8G6_CHRVI Length = 861 Score = 276 bits (706), Expect = 1e-72, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 3/222 (1%) Query: 119 GSFYGTLCAASSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 G ++G + + E +Q +G + YI + L+ + + L ++ D Sbjct: 241 GRWHGEIWNRKKSGELYPEILHINAVQDPSGRVTHYIGMFIDITDLKNSQSRLENLAHYD 300 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 LTGLPNR + L A+ + F+DLDNFKL+ND GH +GD LI +G Sbjct: 301 VLTGLPNRLLLGYRLRQALDDAQRHERLAAVCFLDLDNFKLVNDHHGHETGDRLLIDIGR 360 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGA 296 RL ++ + + RLGGDEF+++ + ++ ++ R+ + + + + Sbjct: 361 RLRDTLRSNDTVARLGGDEFVILLNDLRNQEELDNVLVRLLDGVAHPVRIDALQI-VITV 419 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPA 338 S+G+ + D D+ L AD AMYQ K+ + + P Sbjct: 420 SVGVTIYPLDDHDPDTLLRHADQAMYQAKQMGRNRYQLFDPE 461 >UniRef50_A0L914 Diguanylate cyclase/phosphodiesterase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L914_MAGSM Length = 1264 Score = 276 bits (706), Expect = 1e-72, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 106/224 (47%), Gaps = 3/224 (1%) Query: 119 GSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 G + G + + SER + +++ G I + + + + Q+ D Sbjct: 759 GHWSGEVMGQRKQGALASERLSLSLVRRPDGSTQNTIAVFTDLTEQKAQEELIWRQANFD 818 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 LT LPNRR + L + A ++ + F+DLD FK IND GH +GD L + E Sbjct: 819 PLTSLPNRRLFQDRLHQALAQADRSAGRVALFFLDLDRFKPINDTMGHQAGDELLQKCAE 878 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGA 296 R+N ++ + + RLGGDEF V+ N +N D+S + E I + + ++L + Sbjct: 879 RINAAVRSSDTVARLGGDEFTVILPNIQNGQDLSRIAEGIIKTLTEPFYLKAGEANI-ST 937 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 S+G+ ++ D + + AAD A+YQ K H + +L+ Sbjct: 938 SVGVAVYPDDSQDDEGLMRAADAALYQAKDHGRNNVQFFTESLN 981 >UniRef50_B7K9S9 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7K9S9_CYAP7 Length = 1015 Score = 276 bits (706), Expect = 1e-72, Method: Composition-based stats. Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 6/226 (2%) Query: 119 GSFYGTLCAASSEKRQWSERAEQVL-QLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 G + G L + + + QVL Q G I ++ + + + A L + D Sbjct: 526 GHWEGELTHTRQDGTKIIVESRQVLVQDDRGQIKGILEVNRDITERKLAQFQLEHNALHD 585 Query: 178 SLTGLPNRRAIFENLTTLFSLARHL-NHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 +LT LPNR + E + A+ ++ + FIDLD FK IND GH GD L+ + Sbjct: 586 ALTELPNRLLLMERIQAAIQRAKRKPHYHFALLFIDLDRFKTINDTLGHLVGDHLLVAIA 645 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPG 295 RL ++G+ + RLGGDEF+++ + E +D + ERI +I+ + + + Sbjct: 646 TRLQHCVRSGDTVARLGGDEFIILLDDLLEESDAFPITERILGRIKEPLVINNQQI-QTS 704 Query: 296 ASLGIVEVDPETTDADS-ALHAADIAMYQEKKHKQKTPFVAHPALH 340 AS+GI + + ++++ L AD+AMY K+ + V +P +H Sbjct: 705 ASIGI-VFNRDGNESETDLLRNADLAMYSAKEQGKSRYAVFNPTMH 749 >UniRef50_C6MMM5 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Geobacter sp. M18 RepID=C6MMM5_9DELT Length = 1097 Score = 276 bits (706), Expect = 1e-72, Method: Composition-based stats. Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 2/207 (0%) Query: 135 WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTT 194 W+ + + AG + Y+ + + + L QS D LTGLPNR + + + Sbjct: 491 WNALSVSPVLNAAGEVTNYVGIVNDITERKRYEEQLEYQSNHDGLTGLPNRNLLGDRIGQ 550 Query: 195 LFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGG 254 + A + + FIDLD+FK IND GH+ GD L RL+ ++ + + R GG Sbjct: 551 ALTYAERYQRQTAVFFIDLDHFKFINDSLGHDMGDKLLQIAARRLSECVRSIDTVARHGG 610 Query: 255 DEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSA 313 DEF++V + + D + + +IQ + Y +G+ +L S GI + +DA Sbjct: 611 DEFVIVLSDLAVSEDAAKVARKIQDAVCRPYQIGEHEL-VVSCSTGISLYPKDGSDAQVL 669 Query: 314 LHAADIAMYQEKKHKQKTPFVAHPALH 340 L AD+AMY+ K+ + L+ Sbjct: 670 LKNADVAMYRAKQCGRNNFQFYTGDLN 696 >UniRef50_Q74A79 Sensory box/GGDEF family protein n=1 Tax=Geobacter sulfurreducens RepID=Q74A79_GEOSL Length = 873 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 66/251 (26%), Positives = 108/251 (43%), Gaps = 15/251 (5%) Query: 100 AARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWS----ERAEQVLQLFAGLIAQYIQ 155 I LS P+ D L E R+ S + AE V++ A + Sbjct: 358 ELTGADIHALLSGPVQEVDSE----LERCLRETRELSLCHRDGAELVVEAMATQVPHGDD 413 Query: 156 -----KEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAF 210 + R L+ Q+ D+LTGLPNR + + L + AR + + Sbjct: 414 QALCLMFHDITDRRRFQEELLHQATHDTLTGLPNRSLLEDRLNQAVAGARRRGQMVALLM 473 Query: 211 IDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN-ADI 269 DLDNFK++ND GH +GD L V R+ + +N + RLGGDEF++V N D Sbjct: 474 FDLDNFKVVNDTLGHTAGDQLLRSVAARIRSFVRNCDTFARLGGDEFVIVLTNLTRMDDA 533 Query: 270 SSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQ 329 ++ E + + + LG +++ AS+GI + ++ + AD AMY K+ + Sbjct: 534 VTVAESFRNLLAMPFFLGGREIFI-TASMGISLFPDDGDTMEALIKKADTAMYHIKESGR 592 Query: 330 KTPFVAHPALH 340 + ++ Sbjct: 593 NSFQFFAEEMN 603 >UniRef50_B7JWK6 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=4 Tax=Cyanothece RepID=B7JWK6_CYAP8 Length = 1143 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 72/337 (21%), Positives = 130/337 (38%), Gaps = 24/337 (7%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIM-FARNSQKMYIPE 66 + + K + E + + LE + + + D + R + A E Sbjct: 562 GLITDITKRKRTEQALYDSEKRLEGILNSLQDVIWSADPKTRQSLYLNPAIQLVYGRPME 621 Query: 67 NFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLC 126 +F LC ++ + G +T + I PDG T Sbjct: 622 DFFRDPHLWLC-------MVHPEDQELVSHHLKLLEDKG-STEVHYRIIRPDGE---TRW 670 Query: 127 AASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 S + + E+ + + + + + + ++A L + D+LT LPNR Sbjct: 671 LHSRSRLVYDEQGKSL---------RIDGINSDITERKQAEEQLQYNATHDTLTQLPNRL 721 Query: 187 AIFENLTTLFSLARHLNHK-IMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQN 245 + L R + + F+DLD FK+IND GH GD L ++ RL + Sbjct: 722 LFMDRLEHALERRRRYSDPLFAVLFLDLDEFKVINDSLGHALGDELLREIARRLQKSLRA 781 Query: 246 GEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVD 304 + + RLGGDEF ++ ++ D + ERI + + ++L +++ S+GI + Sbjct: 782 DDTLARLGGDEFTILLEEIHDVKDAIKIAERIHKDLTRPFNLEGQEIF-TNTSIGIALSN 840 Query: 305 PETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 E A L AD AMY+ K + + +H+ Sbjct: 841 GEYEAASEILRDADTAMYRAKAGGKACYAIFDQQMHA 877 >UniRef50_B8DSE5 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DSE5_DESVM Length = 1251 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 78/341 (22%), Positives = 139/341 (40%), Gaps = 16/341 (4%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKV-DVEARLQHIMFARNSQKMY 63 I+ ++ ++ + + L+ L + L + ++ + + E RL FA Y Sbjct: 611 ILFHIANAINETRDLDELFLSIHTALRRHVQAPNFFIALINEPEDRLDFAYFADERDARY 670 Query: 64 IP-ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY 122 P E+ + S I D + +L TP+ G Sbjct: 671 NPVEHISDPAVQSPTLEVIRTGRQVHLHSDDIEARPVFGSRP--AAWLGTPLRSR-GKVI 727 Query: 123 GTLCAASSE-KRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTG 181 G + E +S R +++ A +A I + ++ L + D LTG Sbjct: 728 GAMVVQHYEDSEFFSARDAELMVPVAEQVAVAI-------ERKQGEEMLTHLALHDPLTG 780 Query: 182 LPNRRAIFENLTTLFSLARHLN-HKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLN 240 LPNR + + + R + ++ + +DLD FK IND GH +GD L++V R+ Sbjct: 781 LPNRALLLDRIERAIQRRRRNDSYRFAVLMLDLDRFKFINDSHGHTTGDNLLVEVARRMR 840 Query: 241 TLQQNGEVIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASLG 299 + + G+ + RLGGDEF ++ + + I + R+ + + + AS+G Sbjct: 841 PVVRAGDTVARLGGDEFALLLEDVDSPRRIVQITRRLLAALERPVRM-GAKVVRTSASIG 899 Query: 300 IVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 +V AD+ L ADIAMYQ K + V + ++H Sbjct: 900 MVLRTQGYDTADALLRDADIAMYQAKAQGKGRFRVFNQSMH 940 >UniRef50_B6BGZ6 Diguanylate cyclase/phosphodiesterase n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BGZ6_9PROT Length = 595 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 76/271 (28%), Positives = 115/271 (42%), Gaps = 28/271 (10%) Query: 79 RAIDENCFFSDEVPDRWGDCIAARNLG-------ITTFLSTPIHLPDGSFYGTLCAASSE 131 E CF SD+V G+ + G P + DG GT+ A Sbjct: 79 HTFGELCFNSDQVVIENGEAMKFEEYGNVKGELLYLEVYKAPFYDEDGKTIGTVGAG--- 135 Query: 132 KRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFEN 191 + L + E ++ L E L Q+ DSLT LPNR + Sbjct: 136 ------------RDITNLKKTQLDLEKNLKILDEQREQLEYQANHDSLTDLPNRVLFMDR 183 Query: 192 LTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGR 251 L ++A+ ++K+ + FIDLD+FK IND GH GD LI+V R+ + + + R Sbjct: 184 LQQSINIAQRYDNKVALLFIDLDHFKEINDSLGHGVGDKVLIEVSRRMKNQMRKSDTLSR 243 Query: 252 LGGDEFLVVSLNNENADISSLRERI---QQQIRGEYHLGDVDLYYPGASLGIVEVDPETT 308 LGGDEF ++ N+ DI + + I + ++ + LY G S+G+ + Sbjct: 244 LGGDEFCIIL--NDIIDIEDMSDIITSGMEALKEPMEINGHTLYV-GMSIGVSVYPNDGN 300 Query: 309 DADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 A S L AD AMY+ K + T A+ Sbjct: 301 SASSLLKNADAAMYKAKGDGRNTYCFYDEAM 331 >UniRef50_Q2YAT8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=4 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2YAT8_NITMU Length = 705 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 60/201 (29%), Positives = 95/201 (47%), Gaps = 2/201 (0%) Query: 140 EQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLA 199 ++ AG I + + Q +E+ + ++ DSLTGLPNR + + L A Sbjct: 245 ISAMKDRAGNIIGASKIVRDITQRKESQERIEYLAHYDSLTGLPNRTLLSDRLRIAIENA 304 Query: 200 RHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLV 259 R + ++ + F+D+D FKL+ND GH GD L V +R+ + + + + R+GGDEF+V Sbjct: 305 RRYSIRLALLFVDIDRFKLVNDSLGHEIGDKLLKAVAQRMQSTVRQADTVSRVGGDEFVV 364 Query: 260 VSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAAD 318 + E A D + E++ I Y + + +L AS+GI DA S AD Sbjct: 365 LLSRIETATDAARSAEKLITSISQPYQIEEHEL-LLTASIGISIYPDNGKDASSLTRNAD 423 Query: 319 IAMYQEKKHKQKTPFVAHPAL 339 AMY K + L Sbjct: 424 AAMYSAKGQGRNRYQFYSEDL 444 >UniRef50_B1Y6A9 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y6A9_LEPCP Length = 898 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 85/335 (25%), Positives = 132/335 (39%), Gaps = 27/335 (8%) Query: 7 ARVSQSLAKEQSLESLVRQLLEM--LEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 R +S+ Q + + EM V D + D R++ + A + Y Sbjct: 321 GRPLRSVGTVQDITERRQAEDEMRLAASVFDNSLNAILIADANGRIRKVNRAFTAITGYT 380 Query: 65 PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGT 124 E V L K + F+ + W + A G + G Sbjct: 381 AEE-AVGDTPRLMKSGLHSPGFYG----EMWAELQAC-----------------GKWDGE 418 Query: 125 LCAASSEKRQWS-ERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLP 183 L + R S + + AG +A YI + + + + + +Y D LTGLP Sbjct: 419 LMNQCKDGRIISVRESIAAVHDPAGAVAYYIGIFHDITEQKASAQRIHQLAYYDVLTGLP 478 Query: 184 NRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQ 243 NR + + + A ++ + F+DLD FK IND GH GD L V +RL Sbjct: 479 NRALLMDRCQHELARAMRDGKRLAVLFLDLDRFKHINDSLGHPVGDGLLRAVAQRLQGTL 538 Query: 244 QNGEVIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVE 302 ++ + I RLGGDEF+V+ + E +A + RI R + L + L GAS+GI Sbjct: 539 RDSDTIARLGGDEFIVLLEHVETSAGVELAARRILDAFRDPFQLEEHRLSV-GASVGISL 597 Query: 303 VDPETTDADSALHAADIAMYQEKKHKQKTPFVAHP 337 +D S AD+A+YQ K + P Sbjct: 598 FPDHASDITSLFKYADLALYQAKAAGRGDFRFFEP 632 >UniRef50_C1DBY5 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor n=3 Tax=Neisseriaceae RepID=C1DBY5_LARHH Length = 839 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 2/195 (1%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 G Y + + Q + L + D LT LPNR + E L + A ++ Sbjct: 381 GTFTHYAGIFSDITQRKLNEERLHYLANHDPLTDLPNRTLLMERLGAALTRAHRQGKRVA 440 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEF-LVVSLNNEN 266 + F+DLD FK IND GH GD L V RL + + + RLGGDEF +V+ + Sbjct: 441 LMFLDLDRFKFINDTLGHAVGDKLLQTVASRLTGSLRASDTVARLGGDEFNIVLEDIRDL 500 Query: 267 ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 ++ +++ +++G L D+Y AS+GI + + + AD AMY+ K+ Sbjct: 501 RGVAQTAQKLIDRVQGMVTLDGHDVYV-TASVGIAIYPDDGSTPEVLRMNADTAMYRAKE 559 Query: 327 HKQKTPFVAHPALHS 341 + +++ Sbjct: 560 RGKNNFQFFTADMNA 574 >UniRef50_A2SDI4 Signal transduction protein n=2 Tax=Proteobacteria RepID=A2SDI4_METPP Length = 1006 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 75/337 (22%), Positives = 133/337 (39%), Gaps = 28/337 (8%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 V + + +++ L + E +E+ + D R+ ++ + E Sbjct: 424 VLKDVTEQKRLALELAAEKERIEVTLHSIGDGVISTDEAGRITYLNP--------VAEQM 475 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 C A F+ V + A + L D YG +A Sbjct: 476 VG------CLLAQARGLPFAQVVQLFDQESGAPLPSPVEQCL------QDREVYGVRESA 523 Query: 129 SSEKRQWSERAEQV----LQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 + R + Q+ + G + + V + R + ++ D LTGLPN Sbjct: 524 ALRHRSGRDYGVQISAAPIAGRDGRVLGAVMVFQDVTEARGLAQKMSYLAHHDGLTGLPN 583 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R + + R + + F+DLD+FK +ND GH GD L V +RL + Sbjct: 584 RVLFQDRVHQACQSGRRHGRRFAVIFMDLDHFKHVNDSLGHAVGDELLKAVAQRLTGALR 643 Query: 245 NGEVIGRLGGDEFLVVSLNNENAD---ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIV 301 + I RLGGDEF+V+ + ++ + ++ + ++I +Q+ LG ++ GASLGI Sbjct: 644 ASDTICRLGGDEFVVLLSDLDDVEVDGVAEVAKKILRQVAQPCVLGGTEVNV-GASLGIA 702 Query: 302 EVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPA 338 + D D+ + AD AMY+ K+ + A Sbjct: 703 LFPGDGEDPDTLMKRADAAMYRSKREGRNRYHFFSKA 739 >UniRef50_C9Y9D8 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9D8_9BURK Length = 897 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 58/195 (29%), Positives = 89/195 (45%), Gaps = 7/195 (3%) Query: 153 YIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFID 212 ++ + Q R+ + ++ D LTGLPNRR + + + + L + F+D Sbjct: 442 FVVTLRDITQQRQDEEEIRRLAFYDPLTGLPNRRLLMDRVRQAMVNSARLGQHGALMFLD 501 Query: 213 LDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN------ 266 LD+FKL+ND GH+ GD L QV RL + G+ + RLGGDEF+V+ + Sbjct: 502 LDHFKLLNDTLGHDVGDELLQQVAYRLRNCVREGDSVARLGGDEFVVLLEGLSDNRTDAA 561 Query: 267 ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 + +I + Y L Y S+GIV + D L AD+AMYQ K Sbjct: 562 NQAEVVAHKILDALALPYSLRGHG-YNSTPSIGIVVFMEDHETMDDLLKKADVAMYQAKA 620 Query: 327 HKQKTPFVAHPALHS 341 + T P + + Sbjct: 621 AGRNTARFFDPVMQA 635 Score = 69.8 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 62/187 (33%), Gaps = 11/187 (5%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 + + + LA + L+ ++ + + E + + +D E + A N Sbjct: 160 NAAERGLLEMLASDVPLQDIMSEFILRYEAIFTGVMGSVLLMDEEGKHLRHGAAPNLPIE 219 Query: 63 YIP--ENFTVSWDYSLCKRAIDEN--CFFSDEVPD-RWGDC-IAARNLGITTFLSTPIHL 116 Y + + C A SD D W A + G+ S PI Sbjct: 220 YCKAIDGGAIGPSAGSCGTAAFTGKEVLVSDIANDPLWAAYKELALSHGLRACWSVPIRS 279 Query: 117 PDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLRE-----ANAALI 171 G GT R S+ Q + A L++ I+ + Q+R+ A L Sbjct: 280 TKGKVIGTFANYYGVARIPSDSELQSARRSAYLLSLAIENDLNDRQIRQDRQAIEEAGLY 339 Query: 172 AQSYTDS 178 Q+ DS Sbjct: 340 RQAILDS 346 >UniRef50_A4C9D0 Putative Sensory box protein n=2 Tax=Proteobacteria RepID=A4C9D0_9GAMM Length = 1503 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 56/192 (29%), Positives = 99/192 (51%), Gaps = 2/192 (1%) Query: 150 IAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIA 209 I YI + + ++A L + D+LT LPNR + + ++ L+R +++ + Sbjct: 1049 INNYIVVITDISEQKDAEKELRVLANYDTLTKLPNRSLLLDRISHATELSRRHKNRLALL 1108 Query: 210 FIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD- 268 FIDLD+FK +ND GH+ GD LI V +RL + + + RLGGDEF+++ + + D Sbjct: 1109 FIDLDHFKQVNDTLGHDLGDTLLITVAQRLKYGLRKQDTVARLGGDEFVILIEDIDTIDE 1168 Query: 269 ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHK 328 + + +I +++ LG+ + S+G+ + ++ L +ADIAMY KK Sbjct: 1169 LIPVCRKICEEVSLPVQLGNHRMTVE-PSIGVAIFPDDADNSLDLLKSADIAMYHAKKRG 1227 Query: 329 QKTPFVAHPALH 340 T H ++ Sbjct: 1228 GATYQFFHQEMN 1239 >UniRef50_B8FI78 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FI78_DESAA Length = 858 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 82/327 (25%), Positives = 139/327 (42%), Gaps = 14/327 (4%) Query: 18 SLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN-FTVSWDYSL 76 + ++ +++ ++E ST ++ +L +++R + + L Sbjct: 276 PIMDVLNEVVRVVERQRPQASTMISLAKD-GKLVSAVYSRLPAGFIRAVGRQRICPESGL 334 Query: 77 CKRA-IDENCFFSDEVPDRWGDCI--AARNLGITTFLSTPIHLPDGSFYGTLCAASSEKR 133 A + E +D + D A+ G+ + PI G G + E Sbjct: 335 AAAAYLGETILVNDASSNPLWDNFRSLAQEHGLHACYAAPILSGKGQLLGVISLYYKESV 394 Query: 134 QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLT 193 +E +L+ L + I+K L E L+ Q+ D LTGL NR A+ E L Sbjct: 395 DPAEEDLALLKAVTDLASVAIEKVRLTE-------TLVYQARHDDLTGLANRGALREWLE 447 Query: 194 TLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLG 253 + A+ + + +IDLD FK +ND GH GD L +V RL + ++ +++ R+G Sbjct: 448 RSLNAAKRYEEMLALLYIDLDRFKQVNDSLGHVVGDQLLKEVVSRLLRIVRDSDILARMG 507 Query: 254 GDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADS 312 GDEF++ + E+ D + RI+Q R Y + D +LY AS+GI + DA Sbjct: 508 GDEFVLAASRLESKEDALGMGRRIRQIFREPYRIQDHELY-LDASIGISFFPEDAQDAGK 566 Query: 313 ALHAADIAMYQEKKHKQKTPFVAHPAL 339 + AD AMY K P + Sbjct: 567 LIRHADTAMYYAKIRGGNRLAEFEPQM 593 >UniRef50_C6P797 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P797_9PROT Length = 830 Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats. Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 4/221 (1%) Query: 122 YGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTG 181 TLCA S +W + G + + + + + + Q+ D LTG Sbjct: 350 IRTLCADGS--MRWMRIRFKSQSDEHGRKYKLTGVSQDITEKKRSEETIWQQANFDPLTG 407 Query: 182 LPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNT 241 LPNRR + L + + + FIDLD FK +ND GH+ GD+ L++ +R++ Sbjct: 408 LPNRRMFQDRLEHEIKKSNREGLPLALMFIDLDKFKEVNDTLGHDKGDILLVEAAQRISG 467 Query: 242 LQQNGEVIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYPGASLGI 300 + + + RLGGDEF V+ ++A+ I + + I Q + + L + ++ + AS+GI Sbjct: 468 CVRESDTVARLGGDEFTVILSELDDANSIERIAQAIIQALVAPFLLAE-EVAFVSASIGI 526 Query: 301 VEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + + + + AD AMY K + P++ + Sbjct: 527 TLYPNDAPNLELLMSNADQAMYASKSAGRNRFSYFTPSMQA 567 >UniRef50_C6P6Y2 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P6Y2_9PROT Length = 814 Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats. Identities = 71/250 (28%), Positives = 108/250 (43%), Gaps = 7/250 (2%) Query: 97 DCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQK 156 D ++ I L + +F G A S+ W+ G IA I Sbjct: 304 DMKLVKDQAILPSLRKALEGERSNFEGHYLATYSDAEGWAYITCTPFHDHNGQIAGGIAI 363 Query: 157 EALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNF 216 + + + A + ++ D LTGLPNRR + + L + + + + FIDLDNF Sbjct: 364 VQDITEHKAAEEKINNLAFYDPLTGLPNRRLLLDRLQHALASSARSGREGALLFIDLDNF 423 Query: 217 KLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLR--- 273 K +ND GH+ GDL L QV +RL + + G+ I RLGGDEF+V+ + D+ + Sbjct: 424 KALNDTLGHDMGDLLLRQVAQRLASCVREGDSIARLGGDEFVVMLEDLGGHDLEAAAQTE 483 Query: 274 ---ERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQK 330 E+I + Y L + Y S+G + L ADIAMYQ K+ + Sbjct: 484 AVGEKILAMLGLPYQLVAHE-YRCTPSIGATLFSGHELAKEELLKRADIAMYQAKQAGRN 542 Query: 331 TPFVAHPALH 340 T + Sbjct: 543 TVRFFDQQMQ 552 >UniRef50_Q5P4K8 Putative sensory box/GGDEF family protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P4K8_AZOSE Length = 698 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 58/198 (29%), Positives = 101/198 (51%), Gaps = 4/198 (2%) Query: 143 LQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHL 202 ++ +G + +I V A LI Q+ D+LTGLPNR + + +T + +R Sbjct: 240 VENESGDVTHFIGVLNDVTARTHAEKRLIHQASHDALTGLPNRNLLNDRITHAIARSR-- 297 Query: 203 NHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSL 262 + F+DLD FKL+ND +GH GD + +V R++ + G+ + RLGGDEF+V+ Sbjct: 298 GRLTAVMFLDLDRFKLVNDSYGHAVGDALIREVANRVSACLRAGDTVARLGGDEFVVLLE 357 Query: 263 N-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAM 321 + D + L +++ ++ +G ++L AS+G+ + D + L ADIAM Sbjct: 358 DLASIEDAARLAAKLRDRLSESVRIGSLELP-LSASIGVALAPRDGRDPEMLLKNADIAM 416 Query: 322 YQEKKHKQKTPFVAHPAL 339 Y+ K+ + P + Sbjct: 417 YRAKERGRNNYCFYGPEM 434 >UniRef50_C6WZ79 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WZ79_METML Length = 1250 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 65/234 (27%), Positives = 100/234 (42%), Gaps = 9/234 (3%) Query: 115 HLPDGSFYG-TLCAASSE-KRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIA 172 + +G + +C + + W + G YI + Q + A Sbjct: 762 TVANGQVWHDEICNRAKDGSLYWVDTTIAPFIGDDGKPQSYISIRTDITQRKAAEDKSNY 821 Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 + D LT LPNRR + + LT + A + F+DLD+FK +ND GH+ GDL L Sbjct: 822 LALYDPLTNLPNRRLLLDRLTHALASAMRTGRGGALLFLDLDHFKTLNDTLGHDVGDLLL 881 Query: 233 IQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLR------ERIQQQIRGEYHL 286 QV E L + G+ + RLGGDEF+V+ ++ + E+I + Y Sbjct: 882 QQVAECLTACVREGDTVARLGGDEFVVILEGLSEQEVEAAAQAEVVGEKILNKFIEPYQF 941 Query: 287 GDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + Y+ +S+GI +D L ADIAMYQ KK + P + Sbjct: 942 KGYE-YHITSSVGITLFGKNNLKSDELLKQADIAMYQAKKLGRNALSFFDPKMQ 994 >UniRef50_Q602I2 Sensory box protein/response regulator n=1 Tax=Methylococcus capsulatus RepID=Q602I2_METCA Length = 710 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 83/338 (24%), Positives = 142/338 (42%), Gaps = 31/338 (9%) Query: 7 ARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPE 66 R+ + +A+ ++ R+ L++ MV S + V+ + R+ + A + Y PE Sbjct: 133 RRLQREIAEHKAA----REQLQVAGMVFSASSEGMLLVNADNRIVAVNPAFVALTGYGPE 188 Query: 67 NFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLC 126 + V D L + F+ + G++ G + Sbjct: 189 D-VVGKDPKLLQSGRHGPAFY-------------------QAMWAA--LEATGTWRGEIW 226 Query: 127 AASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNR 185 +++E + AG + + + + + + + A + QS D+LT LPNR Sbjct: 227 NRRRNGEEYAEHLTINTIYDEAGKVHLRVALFSDITEKKASEALIEFQSCYDALTRLPNR 286 Query: 186 RAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQN 245 R + E L A ++ + +IDLD+FK +ND GH+ GD L+QV R+ + Sbjct: 287 RLLAERLALASERAHRDRGRVALLYIDLDHFKEVNDTLGHHQGDALLVQVAHRVRRCVRE 346 Query: 246 GE--VIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVE 302 E + RLGGDEF V+ + E D + L I + + LGD L + AS+GI Sbjct: 347 SETVTVARLGGDEFTVIVPDFEGMDEVERLARAIIDSLSEPFRLGD-QLAHVSASIGITV 405 Query: 303 VDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + D D L AD AMY K+ + +P + Sbjct: 406 FPDDAADTDGLLRNADQAMYAAKRAGRNGYQAFNPEMQ 443 >UniRef50_A1ALY4 Diguanylate cyclase/phosphodiesterase n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ALY4_PELPD Length = 1238 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 71/281 (25%), Positives = 119/281 (42%), Gaps = 24/281 (8%) Query: 78 KRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQW-- 135 +R + N F R + I +L + + + DG ++ L ++ W Sbjct: 700 QRIVSVNQAFCATTGYRAEEIIGQSSLALRS------DVHDGIYFRQLWRGIRKRGSWQG 753 Query: 136 --------SERAEQV-----LQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGL 182 E + Q + G + YI + + + ++ D+LT L Sbjct: 754 EFWCRHKNGEVSPQWMVVNTVHDRQGTVTNYIALFTDISAQKSQEQRIQHIAHHDALTNL 813 Query: 183 PNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTL 242 PNR E L A + + FIDLD+FK IND GH+ GD L+ RL+ Sbjct: 814 PNRLLCMERLILALQQAHRNGRHVAVIFIDLDHFKNINDSLGHHVGDCVLVTAANRLSMG 873 Query: 243 QQNGEVIGRLGGDEFLVVSLNNENA-DISSLR-ERIQQQIRGEYHLGDVDLYYPGASLGI 300 ++G+ + RLGGDEF+++ + E++ I + R+ +R Y G +L+ S+GI Sbjct: 874 VRDGDTVSRLGGDEFVIILADIEDSHQIEEIMKHRLLPLMRQPYDAGGYELH-CSCSIGI 932 Query: 301 VEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + D D+ L AD AMY+ K+ + L+S Sbjct: 933 SIFPEDGLDKDTLLRNADTAMYRAKEVGRNNYHFYTEELNS 973 >UniRef50_A6WTB4 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=20 Tax=Shewanella RepID=A6WTB4_SHEB8 Length = 1497 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 75/342 (21%), Positives = 139/342 (40%), Gaps = 28/342 (8%) Query: 2 SDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQK 61 I RV+ + + +++ + + +L S + +DVE ++ +A Sbjct: 915 HSNEIERVAG-IYSDITVQRQLEDEVNLLAKAFGNTSEGVLILDVEGSIRVANYAAQQ-- 971 Query: 62 MYIPENFTVSWDYS-LCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGS 120 + D + L ++ + +D + I LS Sbjct: 972 -------IIGIDSTDLVGQSFTQFVQMNDGLASE-----------IKQLLSDSQSWTGER 1013 Query: 121 FYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLT 180 L AS + V+Q G + Y+ + + + ++ A L + D LT Sbjct: 1014 ---ELINASQQP-CPVWLNVSVMQSANGKVTHYVVVFSDITERKQTEADLRRLANYDVLT 1069 Query: 181 GLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLN 240 GLPNR L A+ K+ + F+DLD FK +ND +GH+ GD L++ RL Sbjct: 1070 GLPNRSLFSSRLLQSIQAAQQTGEKLALLFLDLDRFKHVNDSYGHSMGDALLVEASSRLQ 1129 Query: 241 TLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLG 299 + + ++ R GGDEF+++ N N DI+ + ER+ +QI + L + +Y S+G Sbjct: 1130 SCIASEHMLCRFGGDEFVILLRNANSIDDINHIAERLLEQIVAPFKLYGRE-FYISTSIG 1188 Query: 300 IVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 I + ++ + AD+AMY K+ + ++ Sbjct: 1189 ISIWPDDAVQPEAFIKNADLAMYHAKEEGRGNFQYYSSERNA 1230 >UniRef50_A4G3M6 Putative two-component response regulator n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G3M6_HERAR Length = 818 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 59/195 (30%), Positives = 101/195 (51%), Gaps = 2/195 (1%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 G + ++ V Q++ L Q+ D+LTGL NR + E AR +H + Sbjct: 363 GAVGHFVGVLYDVTQIKRYQEDLEHQANYDTLTGLANRNLLNERTQQALLQARRHDHFLS 422 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA 267 + FIDLDNFKL+ND GH +GD + VG RL T ++G+ + R+GGDEF+++ N + Sbjct: 423 LVFIDLDNFKLVNDSMGHGAGDELIANVGSRLQTCVRDGDTVARIGGDEFVLLLTNQSVS 482 Query: 268 DISS-LRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 D ++ + +RIQ ++ + ++ S+G+ + D++S L AD AMY+ K Sbjct: 483 DSNAGVMQRIQAELIKPMWIRGQEI-VVTCSMGVARFPEDGEDSESLLANADTAMYRAKS 541 Query: 327 HKQKTPFVAHPALHS 341 + +++ Sbjct: 542 SGRNNFQFYTKEMNA 556 >UniRef50_Q2SLT6 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SLT6_HAHCH Length = 928 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 63/207 (30%), Positives = 104/207 (50%), Gaps = 3/207 (1%) Query: 136 SERAEQVLQLFAGLIAQYIQ-KEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTT 194 S E + + Y+ + + + + Q+Y D LT LPNR +FE+L + Sbjct: 454 SSLVEMYVSDIKDKASSYLYLIVHDITDRKRSEEQIRLQAYYDPLTRLPNRSYLFEHLNS 513 Query: 195 LFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGG 254 L + + ++ + FIDLD FK +ND GH GD L QV RL + + +++ RLGG Sbjct: 514 LIASHKREQARLAVLFIDLDRFKQVNDNLGHGVGDKLLQQVSTRLKSRLRESDMLARLGG 573 Query: 255 DEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSA 313 DEF VV + E D + + + QQ+ + +GD +L+ GAS+G+ + DA + Sbjct: 574 DEFTVVLPHLREETDAIHVAKMLLQQLADSFSVGDYELHI-GASIGVTLFPKDGEDASTL 632 Query: 314 LHAADIAMYQEKKHKQKTPFVAHPALH 340 + ADIAMY+ K + + ++ Sbjct: 633 IKNADIAMYKAKDNGRNQYRFFEERMN 659 >UniRef50_C6CKZ2 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Dickeya RepID=C6CKZ2_DICZE Length = 689 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 103/227 (45%), Gaps = 3/227 (1%) Query: 116 LPDGSFYGTLCAASSEKRQW-SERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 DG + G + + + E V++ AG Y+ + + Q ++ A + Q+ Sbjct: 197 DEDGVWVGEMWDRKKDGSDYLKEITINVIKDAAGTPINYVGVFSDITQRKKQEALIWRQA 256 Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 D++T LPNR + L A+ + + IDLD+FK +ND GH +GD L+ Sbjct: 257 NYDAVTTLPNRHHFQDKLERAVEHAKQSGRPMALMLIDLDHFKSVNDSLGHRAGDALLLA 316 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYY 293 V RL Q + I RLGGDEF ++ + ++N D L + Q+ +++ D + Sbjct: 317 VSNRLTDCVQGADTIARLGGDEFAIILTDLHQNGDSGCLARTLLAQLAQPFNI-DGESML 375 Query: 294 PGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 AS+GI ++ + AD AMY K + PALH Sbjct: 376 VSASIGIALFPNDSDTLEELFKNADQAMYAAKSAGRNCFNYYTPALH 422 >UniRef50_A3Y6G1 Sensory box protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y6G1_9GAMM Length = 702 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 58/196 (29%), Positives = 92/196 (46%), Gaps = 7/196 (3%) Query: 151 AQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAF 210 + + Q + + Q+ D LTGLPNRR + + L L H N + + + Sbjct: 237 TYVLAVMRDISQRKADEKLIWQQANYDHLTGLPNRRLLLDRLEQLIHRIHHTNSSLALFY 296 Query: 211 IDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD-- 268 +DLD FK +ND+FGH GDL L V +RL + + + RLGGDEF ++ E+ D Sbjct: 297 LDLDRFKEVNDKFGHAKGDLLLQDVAKRLTQCVRKSDTVARLGGDEFTIIIAELEDEDKA 356 Query: 269 ----ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQE 324 + + + I + + L + +Y AS+GI + +D L+AAD AMY Sbjct: 357 NKITVERIAQAILNALNRPFKLDNEQVYI-SASIGITFYPEDANFSDVLLNAADQAMYAA 415 Query: 325 KKHKQKTPFVAHPALH 340 KK + ++ Sbjct: 416 KKQGKNCFQYFSFSMQ 431 >UniRef50_B9L266 PAS domain S-box protein n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L266_THERP Length = 1941 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 84/334 (25%), Positives = 144/334 (43%), Gaps = 17/334 (5%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP--E 66 + + +A+ L ++ L ++E + + + RL H A + Y+ + Sbjct: 1602 LLRLIAEAAPLSEILELLCRLVEQQAPGLRCSVLLLGSDDRLYH-GAAPSLPPRYLAAID 1660 Query: 67 NFTVSWDYSLCKRA--IDENCFFSDEVPD-RWGDCI-AARNLGITTFLSTPIHLPDGSFY 122 + C A +D F D D RW D AA G+ STPI G+ Sbjct: 1661 GLPIGPQAGSCGTAAYLDRPIFVEDIASDPRWADYREAALEAGLRACWSTPIRGTSGNVL 1720 Query: 123 GTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGL 182 GT+ +SE R E++L+L L A +++ + + L +++ D LTGL Sbjct: 1721 GTVALYASEPRGPQPNEERLLELATQLAALALERW-------QESEELRHRAFHDPLTGL 1773 Query: 183 PNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTL 242 PNR + L + A I + F+DLD+FK +ND +GH GD+ L + RL+ Sbjct: 1774 PNRLLFLDRLEHAVARADRDGGGIAVLFLDLDDFKRVNDTWGHAVGDVVLQEAAARLSRQ 1833 Query: 243 QQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIV 301 + G+ + R GDEF V+ D+ + ER+ + G+ ++ G S+G Sbjct: 1834 VRAGDTVARFAGDEFTVLLDGVTGEHDVRVVTERLLAALASPIRCGEQEIRM-GLSIGAA 1892 Query: 302 EVDPE-TTDADSALHAADIAMYQEKKHKQKTPFV 334 D+ + L +AD A+Y K+ + + Sbjct: 1893 VATGRPMPDSGALLLSADQALYAAKRRGKGCYEI 1926 >UniRef50_B9M3D1 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Geobacter sp. FRC-32 RepID=B9M3D1_GEOSF Length = 934 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 60/210 (28%), Positives = 106/210 (50%), Gaps = 3/210 (1%) Query: 132 KRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFEN 191 ++ + E L + G I I+ + + ++ +A+ ++ D+LTGLPNRR E Sbjct: 453 EKLYLEITASPLFDYDGRINAGIEVVRNISRRKQMESAIEQMAFHDALTGLPNRRLFNER 512 Query: 192 LTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTL-QQNGEVIG 250 L + A+ + + + F+DLD+FK IND GH GD L +V RL ++ + I Sbjct: 513 LAQAIAYAQRNDQFLAVMFLDLDHFKDINDSLGHTIGDELLKEVATRLKRCGRRAEDTIA 572 Query: 251 RLGGDEFLV-VSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTD 309 R GGDEFL+ +S + D L + Q++ + L +L+ S+GI + D Sbjct: 573 RQGGDEFLLFLSEIKDKEDAVHLAALLLQEMTAPFILSGYELFV-SVSIGISIYPHDGRD 631 Query: 310 ADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 ++ ADIAMY+ K+ + + + + ++ Sbjct: 632 VETLASNADIAMYRAKQQGRNSVNLYNHSM 661 >UniRef50_B8GMU1 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GMU1_THISH Length = 862 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 83/356 (23%), Positives = 137/356 (38%), Gaps = 29/356 (8%) Query: 2 SDQIIARVSQSL-----AKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFA 56 S+Q + R +L A+ ++L +VRQL +E T +ES A Q I Sbjct: 264 SEQALRRSRDALERQVEARTENLTEVVRQLRREIEERTRVESALRLSEQRLANAQRIARL 323 Query: 57 RNSQKMYIPENFTVSWD--YSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFL--ST 112 + + S + L + + GD I L Sbjct: 324 GHWEWEIATGRLYWSAEVYNLLGLGPEFTTPDYERFLEMIPGDDRQRLQEAIARCLEHGL 383 Query: 113 P------IHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREA 166 P I PDGS + +++ G + + + Sbjct: 384 PYEIDHRITCPDGS------------ERILHEDGELVYDDEGKPLLLRGTAQDITERHDY 431 Query: 167 NAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHN 226 L + D +TGLPNR + L + A + + F+D+D FK +ND GH Sbjct: 432 QNRLRHLANFDPVTGLPNRTLFKDRLQHALANATRNQRLVALLFLDMDQFKNVNDSLGHM 491 Query: 227 SGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSL-RERIQQQIRGEYH 285 GD L Q ERL + G+ + R GGDEF+++ N E+++ +SL ER+ Q +R + Sbjct: 492 MGDELLRQTAERLLGCVREGDTVARFGGDEFIILLENIEHSEQASLSAERVVQAMRRPFR 551 Query: 286 LGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 LG+ + ++ S+GI + + + AD AMY K P +++ Sbjct: 552 LGEHE-HFCNVSIGISLYPEDDEHPEDLVRHADSAMYLAKAQGGAGYRFYTPDMNT 606 >UniRef50_C7LQB7 Diguanylate cyclase/phosphodiesterase n=2 Tax=Deltaproteobacteria RepID=C7LQB7_DESBD Length = 556 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 2/206 (0%) Query: 136 SERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTL 195 SE + + L+ + + E + + L + D LTGLPNR + + L Sbjct: 89 SEMETTLREANEKLVVASVNAHMMTEAVERVSVHLSYMAEHDLLTGLPNRALLTDRLVQS 148 Query: 196 FSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGD 255 LA+ +K+ + F+DLD+FK IND GH GD L V +RL +N + + R GGD Sbjct: 149 ILLAKRHGNKVALMFLDLDHFKHINDSLGHGIGDQLLQSVAKRLQASVRNSDTVSRHGGD 208 Query: 256 EFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSAL 314 EF+V+ E+ + E++ + + + +L S+GI + DA++ + Sbjct: 209 EFVVLLPEVEDVQSAAHAAEKLIHSVGEPHFISGQELRV-TLSVGISMYPDDGVDAEALM 267 Query: 315 HAADIAMYQEKKHKQKTPFVAHPALH 340 AD+AMYQ KK + + + P+++ Sbjct: 268 RKADMAMYQAKKAGRNSYKIFTPSMN 293 >UniRef50_A1TZQ7 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=5 Tax=Gammaproteobacteria RepID=A1TZQ7_MARAV Length = 819 Score = 274 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 77/342 (22%), Positives = 132/342 (38%), Gaps = 31/342 (9%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 +Q+ R+ + + + E+ +R+ + ++ R I +A Sbjct: 238 NQMRERLIDDVTRRERDEAEIRKFSKAIDQSPSSVLIC-------DRQWRIEYANRKFSQ 290 Query: 63 ---YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDG 119 P SL +D + E W G Sbjct: 291 LTGNSPSEIIGKHPSSLIDPGVDSH-----EARQLWKSIRLQVQ-------------RVG 332 Query: 120 SFYGTLCAASSE-KRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDS 178 + G + + +R W + ++ G Y+ + + L+ Q+ D Sbjct: 333 VWQGEVNSTRKNGERYWEQLVVTPIKDNNGESTGYLILGEDISIRKRYEQQLLRQANYDI 392 Query: 179 LTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGER 238 LTGLPNR + L + AR K+ + F+DLDNFK IND GH++GD LI+ R Sbjct: 393 LTGLPNRMLALDRLKLALAQARRDESKVGVMFLDLDNFKHINDTLGHDAGDTLLIEAARR 452 Query: 239 LNTLQQNGEVIGRLGGDEFLVVSLNNENADI-SSLRERIQQQIRGEYHLGDVDLYYPGAS 297 +++ + + RLGGDEFLVV D S + ERI + + L +++ S Sbjct: 453 ISSCLRGTSTVARLGGDEFLVVLPGLNGPDASSQVAERILKTFAPPFMLSGQEVFVTT-S 511 Query: 298 LGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 +GI ++ ++ + L AD AMY+ K + P + Sbjct: 512 IGIATFPDDSDNSGTLLQHADAAMYEAKHKGKSAYARFTPEM 553 >UniRef50_C5UZT1 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Gallionella ferruginea ES-2 RepID=C5UZT1_9PROT Length = 1301 Score = 274 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 69/333 (20%), Positives = 144/333 (43%), Gaps = 6/333 (1%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFA-RNSQKMYIPENFTV 70 +L +S + +L LE + S + + A L + A S + + Sbjct: 710 ALYYSKSRSPMADELA-ALERGAHLASLAIERAQTGAWLNKLSQAVEQSPNSIVITDLNA 768 Query: 71 SWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY-GTLCAAS 129 + +Y+ + + EV + + + + T+ + L G + G L Sbjct: 769 NIEYAN-DAFVKTTGYTLPEVMGKNPRILHSGKTTVETYAAMWTQLNSGQMWRGELINRR 827 Query: 130 SEKRQWSERAE-QVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAI 188 + ++ E A L+ G + Y+ + + + ++ A + ++ D LTGLPN+ + Sbjct: 828 KDGTEYVELARISPLRHTDGRVTNYLSIKEDITEQKQVEARIRQLAHFDLLTGLPNQTLL 887 Query: 189 FENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEV 248 + +A+ H + + F+D+D+FK IND GH GD L+ + +R+ L ++ + Sbjct: 888 KDRAGFAMQMAQRSAHHLAVLFLDIDHFKNINDTLGHRIGDELLVHLAKRMKLLLRDEDT 947 Query: 249 IGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETT 308 + R GGDEF++V + + + + E+I + + ++ +L S+GI + Sbjct: 948 LSRFGGDEFILVLPDTDADGAAHVAEKILETVAKTCYIEQHEL-VVTPSIGIAMYPSDGM 1006 Query: 309 DADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 D D +AD+AMY+ K+ + + + Sbjct: 1007 DFDKLYQSADVAMYRAKQDGRNNFRFFTSEMQA 1039 Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 52/158 (32%), Gaps = 6/158 (3%) Query: 7 ARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP- 65 V +SLA+ +SL ++++QL+ E + + + + + A + Y Sbjct: 585 RSVLESLARGESLPAVLKQLVLSFEAIYPGMYCSVLLLSADGKRLLHGAAASLPDAYCEA 644 Query: 66 -ENFTVSWDYSLCKRAIDE--NCFFSDEVPD-RWGDC-IAARNLGITTFLSTPIHLPDGS 120 + C A SD D W D A + S PI G Sbjct: 645 INGALIGEKVGSCGTAAFTCKTTVVSDIATDPLWQDYKALALAHNLAACWSVPILSTKGQ 704 Query: 121 FYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEA 158 GT S+ R L+ A L + I++ Sbjct: 705 VLGTFALYYSKSRSPMADELAALERGAHLASLAIERAQ 742 >UniRef50_Q0EY23 Sensory box/GGDEF family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EY23_9PROT Length = 544 Score = 274 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 65/258 (25%), Positives = 110/258 (42%), Gaps = 11/258 (4%) Query: 80 AIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPI-HLPDGSFYGTLCAASSEKRQWSER 138 + E S P W + R+L +L + +P S G + + +S Sbjct: 293 PLAEGLKSSAGSPGAW--NASVRDLDAKQYLWKIVTFIPRASILG-MTHDLRQAILFSNM 349 Query: 139 AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSL 198 +L A + + + + A L+ ++ D LTGLPNR +++ L + Sbjct: 350 LIALLAGTAIWL-----LSGAITKRKAAEKELVHMAHFDLLTGLPNRPLLYDRLDMAMAH 404 Query: 199 ARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQ-QNGEVIGRLGGDEF 257 A K+ + F+DLD FK +ND+ GH +GD L +V RL + + + RLGGDEF Sbjct: 405 AHREKKKLAVMFLDLDGFKEVNDQLGHQAGDEVLQEVAHRLQQCVGRQTDTVARLGGDEF 464 Query: 258 LVVS-LNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHA 316 ++ + D+ ++ R+ + + L D GAS+GI D L Sbjct: 465 ALLLGTIKDGQDVETIAARVIESLGEPVMLSDGQPCNIGASIGIAIYPEHGLSQDELLSN 524 Query: 317 ADIAMYQEKKHKQKTPFV 334 +D AMY K++ + Sbjct: 525 SDTAMYSAKENGKNNYRF 542 >UniRef50_Q47FQ3 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Proteobacteria RepID=Q47FQ3_DECAR Length = 1093 Score = 274 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 107/234 (45%), Gaps = 9/234 (3%) Query: 114 IHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYI-----QKEALVEQLREANA 168 +H D G L AS + +RAE L + + + E+ V + R + Sbjct: 604 LHPEDKKAQGFLFVASDITER--KRAEDALLRSRDELELRVKERTSELESEVLERRRIES 661 Query: 169 ALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSG 228 L ++ D+LTGL NR + + L A + K+ I FIDLD FK IND GH+ G Sbjct: 662 KLRYLAHHDALTGLANRTLLQQRLGEAMDNAAQDDTKVAILFIDLDRFKTINDSLGHHIG 721 Query: 229 DLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADIS-SLRERIQQQIRGEYHLG 287 D L V RL ++ + I RLGGDEF+++ N ++ L +I +R + Sbjct: 722 DTLLKNVASRLTETLRSNDTIARLGGDEFMIILPLKANEALAGKLASKILDALRPPIRID 781 Query: 288 DVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 +L+ S+GI + ++ + AD AMYQ K + + T +++ Sbjct: 782 GHELFV-TPSIGICFYPNDGVTVNALMRNADTAMYQAKANGRNTYCYFTAEMNA 834 >UniRef50_A0LAF7 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LAF7_MAGSM Length = 951 Score = 274 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 111/229 (48%), Gaps = 11/229 (4%) Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALIA 172 +G + G + ++R+ E + L + A G+I+ ++ + + + L Sbjct: 452 EGHWSGEIW----DRRRNGEIFPKWLAISAIRNRQGVISHFVGVFNDISRQKSTEQQLER 507 Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 + D LT LPNR + L +A N + + +DLD FK+IND GH GD L Sbjct: 508 LVFYDPLTQLPNRVLFRDRLIHEVGVAERSNKLMSLLLVDLDRFKIINDTLGHGVGDELL 567 Query: 233 IQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDL 291 +QV +RL + + + RLGGDEF ++ E A D + + E I Q++ + + + +L Sbjct: 568 LQVSKRLIASVRKSDTVARLGGDEFAIILPGMERAEDAAHVAETIINQLQVPFSIEENEL 627 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + GAS+GI + D DS AD AM++ K+ + T P ++ Sbjct: 628 FV-GASIGIAVHGQDGDDYDSLTMNADAAMFKAKESGKGTYKFFTPDMN 675 >UniRef50_C5T1I4 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T1I4_ACIDE Length = 830 Score = 274 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 76/347 (21%), Positives = 126/347 (36%), Gaps = 37/347 (10%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 V Q + +E +R+ L ++ + ++ + + S YI + Sbjct: 249 GVVQDVTEEHRSAEQLREQLLFIQRIASRIPGFIYEY-------RMHNDGASSVPYISDA 301 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTF-------LSTPIHLPDGS 120 + D VPD D R + + + +PDGS Sbjct: 302 VREFMGVNPEDVMRDHGLLMRSVVPD---DAAHVRRSAVASLRNLAPWQCEYRVSMPDGS 358 Query: 121 FYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLT 180 + A R+ +++ + + A + ++ D+LT Sbjct: 359 VRWHITNAIP-HREPDGS----------VVSHGFTM--DITDRKRAEQEIERLAFYDALT 405 Query: 181 GLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLN 240 GLPNRR + + L + + FIDLDNFK +ND GH+ GD L QV RL Sbjct: 406 GLPNRRMLLDRLQRAVAATSRTQQFGALLFIDLDNFKDLNDTLGHDMGDHLLSQVAARLL 465 Query: 241 TLQQNGEVIGRLGGDEFLVVSLNNENA------DISSLRERIQQQIRGEYHLGDVDLYYP 294 + + + R GGDEF+V+ + E++ + + LG +Y Sbjct: 466 ACVRETDTVARFGGDEFVVMLETLRPELTEAASQAEIVAEKLLASLNQPFALGGQQ-HYS 524 Query: 295 GASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 S+GI E D L AD+AMYQ K + T P + + Sbjct: 525 TPSIGITLFGDERLSVDELLKRADLAMYQAKGAGRNTQRFFDPDMQA 571 >UniRef50_D2M0Q8 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2M0Q8_BACS4 Length = 391 Score = 274 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 59/211 (27%), Positives = 102/211 (48%), Gaps = 8/211 (3%) Query: 136 SERAEQVLQLFA-------GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAI 188 ++ + + L+L A I + + + + +E L +Y D LT LPNR I Sbjct: 155 TDDSVRWLELIATPKNDSNNNIVKIVGTIHNITRQKELEDKLRQLAYYDELTDLPNRLMI 214 Query: 189 FENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEV 248 F+++ + ++ H + + FIDLD FK +ND GH++GD L V RL+ + ++ Sbjct: 215 FKHVKKALARSKRQEHNLAVMFIDLDGFKNVNDTMGHDAGDTLLKDVATRLSESVREEDL 274 Query: 249 IGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETT 308 GRLGGDEF++V +N +I + +RI + I + + ++ S+GI + Sbjct: 275 TGRLGGDEFILVLEEVQNEEIEMIAKRIIENISNPFIIDGEEVNV-SPSIGISMFPSDGE 333 Query: 309 DADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 D + AD AMY K + + + L Sbjct: 334 VFDELVQNADKAMYYAKTNGKNSYKFYTSEL 364 >UniRef50_Q2BL35 Sensory box/GGDEF/GAF/EAL domain protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BL35_9GAMM Length = 970 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 62/238 (26%), Positives = 109/238 (45%), Gaps = 18/238 (7%) Query: 116 LPDGSFYGTLCAASSEKRQWSE---------------RAEQVLQLFAGLIAQYIQKEALV 160 D ++ + + SEK W+ + ++ G + +Y+ + + Sbjct: 347 HHDDQYFAEMWKSLSEKGNWTNEIWNRRKDGEIFAAIQTVSAIKDENGELLRYVSLFSDI 406 Query: 161 EQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLIN 220 L++ L ++ D+LTGLPNR + + L A+ + +AF DLD FK +N Sbjct: 407 TALKKQQQQLEKIAHYDALTGLPNRVLLSDRLQQAILQAKRHKRLLAVAFFDLDGFKEVN 466 Query: 221 DRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQ 279 D GH+ GD LI++ ER + G+ + RLGGDEF+VV + + + + + ER+ + Sbjct: 467 DTHGHSIGDKLLIELAERSKQALREGDSLARLGGDEFVVVLQDLHSSEESLPVLERLLKA 526 Query: 280 IRGEYHLGDVDLYYPGASLGIVEVDP-ETTDADSALHAADIAMYQEKKHKQKTPFVAH 336 I + ++ AS+GI + DAD + AD AMY K+ + + Sbjct: 527 ISKPIFMNHTEICV-SASIGITFYPQADEIDADQLIRQADQAMYVAKQSGKNRYHIFD 583 >UniRef50_B9YY70 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Lutiella nitroferrum 2002 RepID=B9YY70_9NEIS Length = 1054 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 60/225 (26%), Positives = 106/225 (47%), Gaps = 3/225 (1%) Query: 119 GSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 G + G + + + E + +L+ AG ++ ++ + + + +E A + + D Sbjct: 569 GHWAGEIWNRRKDGTIYPEWLSISLLRDEAGQVSHHVALFSDISERKEQEAHIRHMAEHD 628 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 LT LPNR I + L A +++ + F+DLD+FK IND GH GD L QV + Sbjct: 629 FLTDLPNRALIHDRLAQAIRAAARQKNRLAVLFLDLDHFKNINDTLGHAHGDELLKQVAQ 688 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGA 296 RL + + +GR GGDEF+++ A+ + L +R+ +R + + L Sbjct: 689 RLQHTVRGSDTVGRNGGDEFVLIVPELASPAEAAQLAQRLLDDLRRPFQIDGQALAI-ST 747 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 S+GI ++ L +AD+AMY K + P L++ Sbjct: 748 SIGISLFPDNGSELQELLVSADLAMYHAKAQGRNRYQFFTPELNA 792 >UniRef50_Q9I310 Uncharacterized signaling protein PA1727 n=74 Tax=Proteobacteria RepID=Y1727_PSEAE Length = 685 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 110/245 (44%), Gaps = 10/245 (4%) Query: 99 IAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEA 158 +AA + +F D + L + A + L ++ ++ Sbjct: 193 MAAAQFPLGSFCGAAGRGIDNGWLAVLVIVIT-------LAVIAIALIVSVLDSRLEART 245 Query: 159 --LVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNF 216 L L AN LI + D+LT LPNR + + L A + + + F+DLD F Sbjct: 246 SVLATSLARANRELIQLALHDNLTKLPNRMLLDDRLEQAIQQAIRDDRRFAVLFMDLDGF 305 Query: 217 KLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERI 276 K +ND +GH+ GDL LI+V ER+ + + I RLGGDEF+++ E AD ++L E++ Sbjct: 306 KAVNDAYGHHLGDLLLIEVAERIRANVRAQDTIARLGGDEFVLLIEAREPADAATLAEKL 365 Query: 277 QQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAH 336 ++I Y + ++ AS+GI + + AD AMY K + Sbjct: 366 VKRISQPYQISRHEVRI-SASIGIALYPGDGQTRHELMINADAAMYHAKDQGRNGYCFFE 424 Query: 337 PALHS 341 ++++ Sbjct: 425 SSMNA 429 >UniRef50_A1AUR6 Diguanylate cyclase/phosphodiesterase n=2 Tax=Pelobacter propionicus DSM 2379 RepID=A1AUR6_PELPD Length = 729 Score = 274 bits (701), Expect = 4e-72, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 95/186 (51%), Gaps = 2/186 (1%) Query: 156 KEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDN 215 + + R++ + +Y DSLT LPNR + L + A + + + F+DLD Sbjct: 284 LFEDITERRKSEQQIQHMAYFDSLTDLPNRVLFLDRLRQAIAHALRDENSLAVLFLDLDR 343 Query: 216 FKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRE 274 FK IND GH++GD LIQV RL ++ + + RLGGDEF+V+ + + + + + + Sbjct: 344 FKDINDTLGHSAGDQLLIQVTRRLGRQIRSCDTLARLGGDEFVVIVTDLGKKMNATRVAQ 403 Query: 275 RIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFV 334 + I+ + + +L+ S+GI + +A++ + AD+AMY K+ + Sbjct: 404 DLINAIQPPFLIAGRELHVTT-SIGIALFPDDGNNAETLVKHADLAMYSSKESGRNRYNF 462 Query: 335 AHPALH 340 +++ Sbjct: 463 YSASMN 468 >UniRef50_B8KF61 Ggef/eal/pas/pac-domain containing protein n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KF61_9GAMM Length = 810 Score = 274 bits (701), Expect = 4e-72, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 108/236 (45%), Gaps = 14/236 (5%) Query: 117 PDGSFYGTLCAASSEKRQWSERA----------EQVLQL--FAGLIAQYIQKEALVEQLR 164 D FY + A E W ++L + G + ++ + QL+ Sbjct: 309 HDAEFYKKMWHALKETGTWRGEIWNRRKSGAVFPELLTISKIDGQNSGFVAIFTDITQLK 368 Query: 165 EANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFG 224 E L ++ D LT LPNR I E L A+ + ++ + F+D+D+FK IND G Sbjct: 369 ETEEQLQKLAHYDPLTELPNRYLINERLQQSIRRAQRRSERLAVFFLDIDSFKNINDSLG 428 Query: 225 HNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISS-LRERIQQQIRGE 283 H +GD L RL L ++ + +GR+GGDEFL++ + + D+++ + E+I +R Sbjct: 429 HLAGDKLLAMTANRLRELLRDDDTVGRIGGDEFLMLLEDINSPDVATNIAEKIIGALRKP 488 Query: 284 YHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 L + AS+GI + A++ + AD AMY K+ + T L Sbjct: 489 TILEGRSVSV-SASVGISIYPDDGQTAETLMSNADAAMYSAKEQGRNTFRFYSENL 543 >UniRef50_A0KIJ4 MorA n=2 Tax=Aeromonas RepID=A0KIJ4_AERHH Length = 838 Score = 274 bits (701), Expect = 4e-72, Method: Composition-based stats. Identities = 66/204 (32%), Positives = 98/204 (48%), Gaps = 7/204 (3%) Query: 143 LQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHL 202 +Q G I+ ++ + + +EA + +Y D LTGLPNRR + E L F A Sbjct: 359 VQDDRGEISHFVICFEDISERKEAERRIQDLAYYDELTGLPNRRQLHETLAHAFGEASRD 418 Query: 203 NHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSL 262 + FIDLD+FK IND GH +GD L +V RL L + G+ + RLGGDEF+++ Sbjct: 419 YLIGALLFIDLDHFKTINDSLGHATGDWLLKEVASRLKRLVRQGDCLARLGGDEFVLLLP 478 Query: 263 NNENA------DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHA 316 + + + ER+ +I Y+ + + GAS+GI D L Sbjct: 479 SLSASPPQAEMQADLIAERLISEIAAPYNHAG-QVLHIGASVGITLFPGREQGVDDLLKQ 537 Query: 317 ADIAMYQEKKHKQKTPFVAHPALH 340 AD AMYQ K +KT ++ Sbjct: 538 ADTAMYQAKSAGRKTRRFFDASMQ 561 >UniRef50_Q1N453 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain n=1 Tax=Bermanella marisrubri RepID=Q1N453_9GAMM Length = 800 Score = 274 bits (701), Expect = 4e-72, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 99/207 (47%), Gaps = 2/207 (0%) Query: 135 WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTT 194 W+ VL G I Y+ + + L+ A + ++ D LTGL NRR + L Sbjct: 327 WAIIEASVLYDGQGEIYGYMGAISDITDLKVAQLQMENLAFFDPLTGLSNRRLFKDRLHK 386 Query: 195 LFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGG 254 S ++ + + F+DLD FK IND GH++GD+ L + RL + + + R+GG Sbjct: 387 SISESKRRGSFVALLFLDLDQFKRINDSLGHDAGDVLLEETARRLENSVRESDTVSRIGG 446 Query: 255 DEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSA 313 DEF V+ + EN + + E+I +++ + + ++ S+GI + D ++ Sbjct: 447 DEFTVLLNDVENTHGVRHIAEKILKKVCRPIMVKNQEI-INTVSIGITLAPTDGDDVNTL 505 Query: 314 LHAADIAMYQEKKHKQKTPFVAHPALH 340 + AD+AMYQ K + ++ Sbjct: 506 MRNADMAMYQAKAMGRNNYQFFSEEMN 532 >UniRef50_C6P569 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P569_9PROT Length = 751 Score = 274 bits (701), Expect = 4e-72, Method: Composition-based stats. Identities = 65/255 (25%), Positives = 121/255 (47%), Gaps = 14/255 (5%) Query: 84 NCFFSDEVPDRWGDCIAARNLGITTFLS-TPIHLPDGSFYGTLCAASSEKRQWSERAEQV 142 N D+ P + ++S + DGS+ LC + + ++R ++ Sbjct: 240 NIIHPDDEPRVRDELHDFIQRRAGNYVSEMRLSARDGSWKWMLC-----RGKVAQRDDE- 293 Query: 143 LQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHL 202 AGL+ + + + L++ L ++ D+LTG+PNR + + L + ++ Sbjct: 294 --HSAGLM---VGTFSDITLLKQHERQLEHIAHYDALTGIPNRVLLADRLQQALAHSKRE 348 Query: 203 NHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSL 262 + + ++DLD FKL+ND GH +GD LI+V +R+ + + + RLGGDEF V+ L Sbjct: 349 GTILAVCYLDLDGFKLVNDTMGHEAGDKVLIEVTQRIKKSIRGDDTVARLGGDEFAVLLL 408 Query: 263 NNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAM 321 + S+ R+ ++I + + L+ AS+G+ + DAD+ L AD AM Sbjct: 409 GLHAPEECSASLNRLLEEISQPIEIKNR-LFEVSASIGVSIYPGDDHDADTLLRHADQAM 467 Query: 322 YQEKKHKQKTPFVAH 336 Y K+ + ++ Sbjct: 468 YTAKQSGKNRYYLYD 482 >UniRef50_Q486Y3 GGDEF/GAF/EAL domain protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q486Y3_COLP3 Length = 781 Score = 273 bits (700), Expect = 4e-72, Method: Composition-based stats. Identities = 78/339 (23%), Positives = 151/339 (44%), Gaps = 20/339 (5%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHI--MFARNSQKMY 63 + V++ L + + + + + + + + I +F+ N Sbjct: 195 LNHVAEELCAATNESEVFSIITRSASHIISAQRISYCVPNYKDKCFEIRSVFSENE---- 250 Query: 64 IPENFTVSWDYSLCKRAIDEN--CFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSF 121 + ++ TV + S + + FF + + D + G+ + S P+ + G Sbjct: 251 VMKSATVDMENSALQFVLQSGSPQFFENLAVTNFTDHLILSKNGLCSGWSVPVRVK-GEI 309 Query: 122 YGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTG 181 G L AAS+ K + V+++ +G++ + + L L Q+ D+LTG Sbjct: 310 VGLLNAASNVKINERAQQLGVIKMLSGIMGVTLSRVNL-------QEQLEHQACYDTLTG 362 Query: 182 LPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNT 241 LPNR + + + + + FIDLD FK++ND GH+ GD L +V +R+N Sbjct: 363 LPNRHQFNQRMELAIT--QDNPIPFTLLFIDLDRFKVVNDTMGHDVGDELLCRVTQRINQ 420 Query: 242 LQQNGEVIGRLGGDEFLVVSLNNENADISSLR-ERIQQQIRGEYHLGDVDLYYPGASLGI 300 + + R GGDEF+V+ LN ++ I+ + RI + ++ + + + ++ GAS+GI Sbjct: 421 QIRKEDFAARHGGDEFVVLLLNKQSKAIADITSARIIKALKEPFQIDEHSIFI-GASIGI 479 Query: 301 VEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 + +++ L ADIAMY KK + + + L Sbjct: 480 SYFPEHSKNSEELLKYADIAMYHAKKQGKSSFKLYSSRL 518 Score = 49.7 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 69/160 (43%), Gaps = 4/160 (2%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 + + ++ + S + + +L E L + + +T + E + + +F+ + + Sbjct: 20 ALGNFTLAITEAVSEKEIYNKLAENLPKILQADRGSVTLI-TENKDEFEVFSLQGPEGML 78 Query: 65 PENFTVSWDYSLCKRAID-ENCFFSDEVPDRWG-DCIAARNLGITTFLSTPIHLPDGSFY 122 S D SL A+ E S DR D + + +++P+ D Sbjct: 79 SIGKYFSVDNSLAGLAVQQEKTIISKLNADRIEIDAQQLYQQDLLSIMNSPLQFSD-RII 137 Query: 123 GTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQ 162 GT+ S ++ + + ++L L + L++ Y++++ L+EQ Sbjct: 138 GTVNIGSYKENAYDSTSLELLTLVSTLVSNYLERQHLLEQ 177 >UniRef50_A1U2T3 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=3 Tax=Marinobacter RepID=A1U2T3_MARAV Length = 725 Score = 273 bits (700), Expect = 5e-72, Method: Composition-based stats. Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 2/194 (1%) Query: 147 AGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKI 206 G A+Y V + +EA A + Q+Y D LT LPNR + L + AR K+ Sbjct: 265 TGQPARYYGIARDVTERKEAEAFINFQAYHDLLTRLPNRALFKDRLELAITHARRSQQKL 324 Query: 207 MIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNE- 265 + F+DLD FK++ND GH GD L V RL + G+ + R GGDEF ++ + Sbjct: 325 AVMFLDLDRFKVVNDTLGHAMGDRLLQAVTHRLEKCLRRGDTLSRFGGDEFTLLLPSIHG 384 Query: 266 NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEK 325 + D ++ ++ ++ + LGD +++ G S+GI D + ADIAMY K Sbjct: 385 HDDARNIARKLIHALKAPFQLGDHEVFV-GVSIGISVFPEAGETMDLLIQNADIAMYHVK 443 Query: 326 KHKQKTPFVAHPAL 339 + ++ Sbjct: 444 ARGKDGYRFYSDSM 457 >UniRef50_A6QA23 Putative uncharacterized protein n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QA23_SULNB Length = 703 Score = 273 bits (700), Expect = 5e-72, Method: Composition-based stats. Identities = 73/325 (22%), Positives = 131/325 (40%), Gaps = 20/325 (6%) Query: 27 LEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDE--- 83 + M+ TD+ ++ + Q + ++ + + F SW+ + E Sbjct: 120 IRMVGTHTDITEEKELQLKYSQQAQVLEQIHDAVILLDMDGFIRSWNKG--SEILFEYRA 177 Query: 84 NCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQ-WSERAEQV 142 + + D I + + L +G + G + ++ + + Sbjct: 178 DEVIGKNFSILFSDNITSAYEKWISEL-----KENGEYKGEMFLQKKSGEPLYAVFSFSL 232 Query: 143 LQLFAGLIAQYIQKEALVEQLREANAAL-------IAQSYTDSLTGLPNRRAIFENLTTL 195 L+ G + + + + ++A A L Q++ D+LT LPNR F+ L Sbjct: 233 LKNQNGETTEVVSLIHDITEQKKAEAVLQEQKNILRYQAHHDALTRLPNRVLFFDRLEQS 292 Query: 196 FSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGD 255 + FIDLD FK IND GH+ GD L +R+ + + + RL GD Sbjct: 293 IRKTARSEKDFALFFIDLDKFKHINDSLGHSIGDRVLRVTAKRIKETIRQEDTLARLSGD 352 Query: 256 EFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSAL 314 EF V+ + D S L E+I ++ ++ + LY G S+GI + D +S L Sbjct: 353 EFTVIMEDLGHPEDASVLAEKILLVLQKPMYIDEYTLYISG-SIGISLYPQDAMDTESLL 411 Query: 315 HAADIAMYQEKKHKQKTPFVAHPAL 339 AD AMY+ K++ + T P + Sbjct: 412 KYADTAMYKAKENGRNTFEFYAPEM 436 >UniRef50_B0CD40 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0CD40_ACAM1 Length = 1197 Score = 273 bits (700), Expect = 5e-72, Method: Composition-based stats. Identities = 75/334 (22%), Positives = 127/334 (38%), Gaps = 23/334 (6%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 V ++A + LE +Q ++ + + S + K D+ ++ A + Sbjct: 325 GVLTNIADFKRLEENAQQQIDHYQTLLADISIVIFKTDLAGHWTYLNPAWSKLT------ 378 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 +S + SL K D D+ P ++ C Sbjct: 379 -GISLEDSLGKPIWD--FVHPDDRPGLQEAFHNLVEQTSESY---------NHELRFFCQ 426 Query: 128 ASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 W V++ G + ++ AL+ + D LT LPNR Sbjct: 427 QGGCA--WVVVHNHVIRAEDGTCIGTAGTLEDASERKQTEQALLHDALHDGLTQLPNRVL 484 Query: 188 IFENLTTLFSLARHL-NHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNG 246 + L + + + F+DLD FK+IND GH GD L+ V RL T + Sbjct: 485 FMDRLEQACRSFQRHPDEIFAVLFLDLDRFKIINDTLGHMVGDQLLVAVAHRLQTCLRPE 544 Query: 247 EVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDP 305 + + RLGGDEF ++ N + A D + +RI Q ++ + L +++ S+GI Sbjct: 545 DTVARLGGDEFTLLLPNIDQAEDAMHISDRILQSLKEPFTLDHTEVFI-TVSIGIAMSGN 603 Query: 306 ETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 D L ADIA+Y+ K + + V P + Sbjct: 604 PEQKPDDLLRHADIALYRAKANGKGCYAVFSPEM 637 >UniRef50_B3E8F7 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Geobacter lovleyi SZ RepID=B3E8F7_GEOLS Length = 461 Score = 273 bits (700), Expect = 5e-72, Method: Composition-based stats. Identities = 57/191 (29%), Positives = 92/191 (48%), Gaps = 1/191 (0%) Query: 148 GLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIM 207 G I ++ + + + +E L + D LTGLPNRR + L+ ++A+ + Sbjct: 260 GEIISFVAVKENITERKELRDRLEQMAQFDMLTGLPNRRMFLDRLSQTVAIAQRTEQRFA 319 Query: 208 IAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVS-LNNEN 266 + F+DLD FK IND +GH +GD L V RL + + +GR+GGDEF ++ Sbjct: 320 LLFVDLDGFKRINDSYGHEAGDRVLKTVAARLAACIRMSDTVGRMGGDEFTIILSTLAHY 379 Query: 267 ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKK 326 D + ++I + L D G+S+GI + D D L AD AMY+ K+ Sbjct: 380 EDAGQVADKILDALSRPITLPDGQQDTVGSSIGISVFPEDAQDGDGLLATADDAMYKVKR 439 Query: 327 HKQKTPFVAHP 337 + + + H Sbjct: 440 NGKNSYCFYHS 450 >UniRef50_Q2LY94 Sensory box ggdef family protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LY94_SYNAS Length = 354 Score = 273 bits (700), Expect = 5e-72, Method: Composition-based stats. Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 2/179 (1%) Query: 158 ALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFK 217 + + + A+ +Y D LTGLPNR + L + A+ + + +DLD FK Sbjct: 161 RDITERKRIEDAIRHLAYHDVLTGLPNRILFTDRLVLAIAQAKRYRKTMAVMMLDLDRFK 220 Query: 218 LINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERI 276 IND GH+ GDL L VG RL + + + RLGGDEF+++ + A + ++I Sbjct: 221 TINDTAGHHIGDLLLQSVGRRLTHTLREEDTVARLGGDEFMILLPEIKQALSSFRVADKI 280 Query: 277 QQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVA 335 + + +L AS+GI + D D+ + AD AMYQ K + T Sbjct: 281 VSAFKEPFICEGNELS-TSASIGIAVYPDDGEDMDTLMKHADTAMYQAKSTGRNTYCRF 338 >UniRef50_A1U2V9 Periplasmic sensor diguanylate cyclase/phosphodiesterase n=2 Tax=Marinobacter RepID=A1U2V9_MARAV Length = 908 Score = 273 bits (700), Expect = 5e-72, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 106/231 (45%), Gaps = 21/231 (9%) Query: 114 IHLPDGSFY---GTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAAL 170 + DG + GT A S + + + QL+ A + L Sbjct: 429 VRDADGQWRDMEGTFTAMLSVPG----------------VNGVVLSLRDLTQLKAAQSEL 472 Query: 171 IAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDL 230 ++ D LTGL NR+ + L + +R + F+DLD FK IND GH++GD Sbjct: 473 HRLAFYDPLTGLANRQLFRDRLNHVVRRSRRSGEAAALMFLDLDGFKRINDTLGHDAGDE 532 Query: 231 FLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADIS-SLRERIQQQIRGEYHLGDV 289 L QV + L + + + RLGGDEF+V+ ++ + + E I +++ L D Sbjct: 533 LLRQVAQWLEGCVREEDSVARLGGDEFVVLLSRISGSEAAGKVAENILRRLCQRIRLNDH 592 Query: 290 DLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 ++ S+GI + ++ DA + + AD+AMY+ K+ + T PA++ Sbjct: 593 EVGV-TVSIGITMIPHDSEDAGALMKYADLAMYRAKELGRNTYQFFTPAMN 642 >UniRef50_A8FY98 Signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like protein n=1 Tax=Shewanella sediminis HAW-EB3 RepID=A8FY98_SHESH Length = 951 Score = 273 bits (700), Expect = 5e-72, Method: Composition-based stats. Identities = 63/226 (27%), Positives = 105/226 (46%), Gaps = 11/226 (4%) Query: 117 PDGSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAALI 171 DG + G + KR+ E ++L + A G + Y+ + ++E L Sbjct: 455 ADGHWTGEIW----NKRKNDEIYPEMLTISAVLDATGKVQNYVALFNDITAIKEHQEQLE 510 Query: 172 AQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLF 231 ++ D+LT LPNR + + LT R + + F+DLD FK +ND +GH+ GD Sbjct: 511 RIAHYDTLTNLPNRTLLADRLTQSMVQVRRRKSSLAVVFLDLDKFKDVNDAYGHDVGDKL 570 Query: 232 LIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVD 290 LI + RL ++ + + R+GGDEF+ V ++ E D + ER+ + G + + Sbjct: 571 LIVISRRLKEALRDIDTLARIGGDEFVAVLMDIEKGEDCEPVLERLLEAASGSVTVEGI- 629 Query: 291 LYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAH 336 + AS+G+ + DAD L AD AMY K + + Sbjct: 630 MLKVSASMGVAIYPQDGIDADQLLRHADQAMYVAKHEGKNCYHLFD 675 >UniRef50_B2T9B2 Diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(S) n=2 Tax=Burkholderiales RepID=B2T9B2_BURPP Length = 1037 Score = 273 bits (700), Expect = 5e-72, Method: Composition-based stats. Identities = 65/238 (27%), Positives = 106/238 (44%), Gaps = 16/238 (6%) Query: 115 HLPDGSFYGTLCAASSEKRQWSERAEQVLQLFA-----GLIAQYIQKEALVEQLREANAA 169 G + G + ++R+ E + L + A G ++ Y+ + + + A Sbjct: 538 IHSAGGWQGEVW----DRRKNGEVYPKWLTISAVMSDNGTVSHYVGTHHDITERKIAEER 593 Query: 170 LIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGD 229 + ++ D+LT LPNR + + L + + + FIDLD+FK +ND GH+ GD Sbjct: 594 IKELAFFDALTRLPNRTLLLDRLRQAITASARNEACGALLFIDLDHFKTLNDTLGHDKGD 653 Query: 230 LFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN------ADISSLRERIQQQIRGE 283 L L QV RL + + R+GGDEF+VV N ++ ERI + Sbjct: 654 LLLQQVARRLADSVLESDTVARVGGDEFVVVLGNLHKNRQEAANQTEAVGERILAVLGSP 713 Query: 284 YHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 YHLG ++ Y AS+G D L AD+AMY+ K+ + P + + Sbjct: 714 YHLGKIE-YRTSASIGATVFRGHQASIDELLKQADLAMYKSKERGRNAVRFFDPDMQT 770 >UniRef50_B7GKR7 Multidomain signal transduction protein (Contains PAS, GGDEF and EAL domains) n=2 Tax=Bacillaceae RepID=B7GKR7_ANOFW Length = 594 Score = 273 bits (700), Expect = 5e-72, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 104/223 (46%), Gaps = 3/223 (1%) Query: 119 GSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 G + G + + E + + AG Y+ + V Q + L S D Sbjct: 108 GVWKGEIWNKRKNGELFVEWLTIKAVYDVAGNPTHYVAIFSDVTQHKRTMEQLARLSNYD 167 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 LT +PNR+ + L L AR N ++ I F+DLD FK IND GH SGD+ L +V Sbjct: 168 LLTNVPNRQLFTKRLQHLLDTARRYNQQLAILFLDLDRFKYINDELGHYSGDILLQKVAN 227 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGA 296 RL L + + + R+GGDEF+V+ + + S+ E+I + ++ + L D+Y A Sbjct: 228 RLKKLLRTKDTLARIGGDEFVVILPKLKDIQEAVSIAEQIIESLQAPFLLHHKDIYI-SA 286 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 S+GI + D + L AD AM + K+ + + L Sbjct: 287 SIGISVYPNDGDDGEMLLRRADRAMQKAKESGRNRFELYTAKL 329 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C4LEB0 Diguanylate cyclase with PAS/PAC and GAF sensors... 399 e-109 UniRef50_A7BSH2 Diguanylate cyclase/phosphodiesterase n=1 Tax=Be... 397 e-109 UniRef50_Q2W807 Predicted signal transduction protein n=4 Tax=Ma... 393 e-108 UniRef50_C6X6V4 Diguanylate cyclase/phosphodiesterase with PAS/P... 392 e-107 UniRef50_Q31GH8 Diguanylate cyclase/phosphodiesterase with PAS/P... 391 e-107 UniRef50_C6NZE4 Diguanylate cyclase/phosphodiesterase with PAS/P... 388 e-106 UniRef50_Q47IA0 Diguanylate cyclase/phosphodiesterase with PAS/P... 387 e-106 UniRef50_C5V1I4 Diguanylate cyclase/phosphodiesterase with PAS/P... 386 e-106 UniRef50_Q21SS1 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 386 e-106 UniRef50_A0L9S8 Diguanylate cyclase/phosphodiesterase with PAS/P... 385 e-105 UniRef50_A0L8P4 Response regulator receiver modulated diguanylat... 385 e-105 UniRef50_B0TF94 Predicted signal transduction domain protein n=1... 384 e-105 UniRef50_A0LKD9 Response regulator receiver modulated diguanylat... 384 e-105 UniRef50_A1K4Z0 EAL/GGDEF/PAS/PAC-domain containing signalling p... 384 e-105 UniRef50_C7RNA9 Diguanylate cyclase/phosphodiesterase with PAS/P... 382 e-104 UniRef50_C6NZ79 Diguanylate cyclase/phosphodiesterase with PAS/P... 382 e-104 UniRef50_A0L9T5 Diguanylate cyclase/phosphodiesterase with PAS/P... 379 e-104 UniRef50_Q2W1Z2 Hypothetical 1041 kDa protein in hypE 3'region n... 377 e-103 UniRef50_C5JAR6 Conserved uncharacterized protein n=1 Tax=uncult... 377 e-103 UniRef50_C3X2S2 Diguanylate cyclase/phosphodiesterase with PAS/P... 375 e-103 UniRef50_C7RK65 Diguanylate cyclase/phosphodiesterase with PAS/P... 374 e-102 UniRef50_A5GBG4 Response regulator receiver modulated diguanylat... 374 e-102 UniRef50_Q7P0M4 Putative uncharacterized protein n=1 Tax=Chromob... 374 e-102 UniRef50_C5V3L4 Diguanylate cyclase/phosphodiesterase with PAS/P... 373 e-102 UniRef50_A4U4T7 Two-component sensory box protein n=3 Tax=Magnet... 373 e-102 UniRef50_B3EBJ4 Diguanylate cyclase/phosphodiesterase with PAS/P... 372 e-102 UniRef50_Q3SIW6 Putative diguanylate cyclase/phosphodiesterase (... 372 e-101 UniRef50_Q5P4W8 Putative uncharacterized protein n=2 Tax=Proteob... 372 e-101 UniRef50_Q21SZ9 Diguanylate cyclase/phosphodiesterase with PAS/P... 371 e-101 UniRef50_C5V1H2 Diguanylate cyclase/phosphodiesterase with PAS/P... 371 e-101 UniRef50_C5D2J8 Diguanylate cyclase/phosphodiesterase with PAS/P... 371 e-101 UniRef50_C8SP12 Diguanylate cyclase/phosphodiesterase with PAS/P... 371 e-101 UniRef50_C7RN47 Diguanylate cyclase/phosphodiesterase with PAS/P... 370 e-101 UniRef50_C6WUG6 Diguanylate cyclase/phosphodiesterase with PAS/P... 370 e-101 UniRef50_C6WTL1 Diguanylate cyclase/phosphodiesterase with PAS/P... 370 e-101 UniRef50_A0LD38 Diguanylate cyclase/phosphodiesterase with PAS/P... 370 e-101 UniRef50_Q1JX80 Diguanylate cyclase/phosphodiesterase with PAS/P... 369 e-101 UniRef50_A4J477 Diguanylate cyclase/phosphodiesterase with PAS/P... 369 e-101 UniRef50_Q2W4Z4 Predicted signal transduction protein containing... 369 e-100 UniRef50_C6XCZ6 Diguanylate cyclase/phosphodiesterase with PAS/P... 368 e-100 UniRef50_Q2W154 Putative uncharacterized protein n=2 Tax=Magneto... 368 e-100 UniRef50_Q3JAR2 Diguanylate cyclase/phosphodiesterase with PAS/P... 368 e-100 UniRef50_B4B341 Diguanylate cyclase/phosphodiesterase with PAS/P... 368 e-100 UniRef50_Q0A572 Diguanylate cyclase/phosphodiesterase with PAS/P... 367 e-100 UniRef50_C6P0P9 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 366 e-100 UniRef50_C6P3H6 Diguanylate cyclase/phosphodiesterase with PAS/P... 366 e-100 UniRef50_C4K931 Diguanylate cyclase/phosphodiesterase with PAS/P... 366 e-100 UniRef50_C1DBY5 Diguanylate cyclase/phosphodiesterase with PAS/P... 366 e-100 UniRef50_Q47FU0 Diguanylate cyclase/phosphodiesterase with PAS/P... 366 e-100 UniRef50_Q1H367 Diguanylate cyclase/phosphodiesterase (GGDEF & E... 365 e-100 UniRef50_B8GSP1 Putative diguanylate cyclase n=1 Tax=Thioalkaliv... 365 1e-99 UniRef50_A1KAZ1 Hypothetical signaling protein n=1 Tax=Azoarcus ... 365 1e-99 UniRef50_C6P5X9 Diguanylate cyclase/phosphodiesterase with PAS/P... 365 2e-99 UniRef50_C5V5L2 Response regulator receiver modulated diguanylat... 365 2e-99 UniRef50_B3EBJ5 Diguanylate cyclase/phosphodiesterase with PAS/P... 364 2e-99 UniRef50_C5V330 Diguanylate cyclase with PAS/PAC and GAF sensors... 364 2e-99 UniRef50_C6WYT7 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 364 2e-99 UniRef50_A9BW89 Diguanylate cyclase/phosphodiesterase with PAS/P... 364 3e-99 UniRef50_Q21V50 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 364 3e-99 UniRef50_B7KEH4 Diguanylate cyclase/phosphodiesterase with PAS/P... 364 3e-99 UniRef50_Q5P5U6 Putative uncharacterized protein n=1 Tax=Aromato... 364 4e-99 UniRef50_A1RPJ9 Diguanylate cyclase/phosphodiesterase with PAS/P... 363 4e-99 UniRef50_C6P3H7 Diguanylate cyclase/phosphodiesterase with PAS/P... 363 5e-99 UniRef50_C7RMB6 Diguanylate cyclase/phosphodiesterase with PAS/P... 363 6e-99 UniRef50_B3PKJ2 EAL domain protein n=1 Tax=Cellvibrio japonicus ... 362 7e-99 UniRef50_P72843 Regulatory components of sensory transduction sy... 362 9e-99 UniRef50_D1U882 Diguanylate cyclase/phosphodiesterase with PAS/P... 362 1e-98 UniRef50_Q88QU8 Sensory box protein n=22 Tax=Gammaproteobacteria... 362 1e-98 UniRef50_C6P1Q1 Diguanylate cyclase/phosphodiesterase with PAS/P... 362 1e-98 UniRef50_C6P1A0 Diguanylate cyclase/phosphodiesterase with PAS/P... 362 1e-98 UniRef50_B8HP13 Diguanylate cyclase/phosphodiesterase with PAS/P... 362 1e-98 UniRef50_A1ALY4 Diguanylate cyclase/phosphodiesterase n=1 Tax=Pe... 361 2e-98 UniRef50_Q1PY13 Putative uncharacterized protein n=1 Tax=Candida... 361 2e-98 UniRef50_A1K5Q6 GGDEF/EAL/PAC/PAS-domain containing protein n=1 ... 361 2e-98 UniRef50_C5S5K8 Response regulator receiver modulated diguanylat... 361 2e-98 UniRef50_C5V0K3 Diguanylate cyclase/phosphodiesterase with PAS/P... 361 3e-98 UniRef50_A0L2H7 Diguanylate cyclase/phosphodiesterase with PAS/P... 360 4e-98 UniRef50_C6XBJ6 Diguanylate cyclase/phosphodiesterase with PAS/P... 360 4e-98 UniRef50_C3X4J8 Diguanylate cyclase/phosphodiesterase with PAS/P... 360 4e-98 UniRef50_Q21SE4 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 360 5e-98 UniRef50_Q47AF7 Diguanylate cyclase/phosphodiesterase with PAS/P... 359 7e-98 UniRef50_Q607T2 Sensory box protein/GGDEF domain protein n=2 Tax... 359 9e-98 UniRef50_B8DLV2 Diguanylate cyclase/phosphodiesterase with PAS/P... 359 9e-98 UniRef50_C7RS22 Diguanylate cyclase/phosphodiesterase with PAS/P... 359 1e-97 UniRef50_Q478F7 Diguanylate cyclase/phosphodiesterase with PAS/P... 359 1e-97 UniRef50_Q3IEZ9 Putative uncharacterized protein n=2 Tax=Pseudoa... 358 1e-97 UniRef50_C5V5K2 Diguanylate cyclase/phosphodiesterase with PAS/P... 358 1e-97 UniRef50_B7V0E6 Motility regulator n=25 Tax=Pseudomonas RepID=B7... 358 1e-97 UniRef50_C5V740 Diguanylate cyclase with PAS/PAC sensor n=3 Tax=... 358 2e-97 UniRef50_Q47ZI3 Sensory box/GGDEF/EAL/CBS domain protein n=1 Tax... 358 2e-97 UniRef50_Q47GC0 Diguanylate cyclase/phosphodiesterase with PAS/P... 358 2e-97 UniRef50_Q39R25 Diguanylate cyclase/phosphodiesterase with PAS/P... 357 3e-97 UniRef50_UPI0001698C53 response regulator receiver modulated dig... 357 3e-97 UniRef50_Q31EA2 Diguanylate cyclase/phosphodiesterase with PAS/P... 357 3e-97 UniRef50_C6XEG9 Diguanylate cyclase/phosphodiesterase with PAS/P... 357 4e-97 UniRef50_C6NZD9 Diguanylate cyclase/phosphodiesterase with PAS/P... 357 5e-97 UniRef50_A1WXR7 Diguanylate cyclase/phosphodiesterase with PAS/P... 356 6e-97 UniRef50_C6P464 Diguanylate cyclase/phosphodiesterase with PAS/P... 356 7e-97 UniRef50_B5VXY3 Diguanylate cyclase/phosphodiesterase with PAS/P... 356 7e-97 UniRef50_C6WWM6 Diguanylate cyclase/phosphodiesterase with PAS/P... 356 7e-97 UniRef50_Q47BF2 Diguanylate cyclase/phosphodiesterase with PAS/P... 355 9e-97 UniRef50_C6P1Y8 Diguanylate cyclase/phosphodiesterase with PAS/P... 355 1e-96 UniRef50_Q478L4 Diguanylate cyclase/phosphodiesterase with PAS/P... 355 1e-96 UniRef50_C0N5T0 NMT1/THI5 like family n=1 Tax=Methylophaga thioo... 355 1e-96 UniRef50_C5V7A4 Diguanylate cyclase/phosphodiesterase with PAS/P... 355 2e-96 UniRef50_Q21R50 Diguanylate cyclase/phosphodiesterase with PAS/P... 354 2e-96 UniRef50_B4RZW0 GGDEF domain-containing PAS signal transduction ... 354 2e-96 UniRef50_Q1JY96 Diguanylate cyclase/phosphodiesterase with PAS/P... 354 2e-96 UniRef50_A1K3A1 GGEF/EAL/PAS/PAC-domain containing protein n=1 T... 354 2e-96 UniRef50_A6T0F0 Sensory box/GGDEF family protein n=2 Tax=Oxaloba... 354 2e-96 UniRef50_Q087W4 Diguanylate cyclase/phosphodiesterase with PAS/P... 354 2e-96 UniRef50_C6P6N2 Diguanylate cyclase/phosphodiesterase with PAS/P... 354 3e-96 UniRef50_C6MMM5 Response regulator receiver modulated diguanylat... 353 3e-96 UniRef50_B2JN77 Diguanylate cyclase/phosphodiesterase with PAS/P... 353 4e-96 UniRef50_B8GLY5 Diguanylate cyclase/phosphodiesterase with PAS/P... 353 6e-96 UniRef50_C7RS23 Response regulator receiver modulated diguanylat... 352 7e-96 UniRef50_B1Y6A9 Diguanylate cyclase/phosphodiesterase with PAS/P... 352 8e-96 UniRef50_Q2RPL3 Diguanylate cyclase/phosphodiesterase n=1 Tax=Rh... 352 1e-95 UniRef50_Q2W523 FOG: PAS/PAC domain n=5 Tax=Magnetospirillum Rep... 352 1e-95 UniRef50_Q5P4Q9 Putative uncharacterized protein n=1 Tax=Aromato... 352 1e-95 UniRef50_Q2BJI5 Regulatory component of sensory transduction sys... 352 1e-95 UniRef50_C7RJ77 Diguanylate cyclase/phosphodiesterase with PAS/P... 351 2e-95 UniRef50_C5V280 Diguanylate cyclase/phosphodiesterase with PAS/P... 351 2e-95 UniRef50_C5V2Q6 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 351 2e-95 UniRef50_Q21WS3 Diguanylate cyclase/phosphodiesterase with PAS/P... 350 3e-95 UniRef50_A1K923 GGDEF/PAS/PAC-domain containing protein n=1 Tax=... 350 3e-95 UniRef50_Q2SFI2 FOG: EAL domain n=1 Tax=Hahella chejuensis KCTC ... 350 4e-95 UniRef50_Q602I2 Sensory box protein/response regulator n=1 Tax=M... 350 5e-95 UniRef50_C6X941 Response regulator receiver modulated diguanylat... 350 5e-95 UniRef50_Q7NTV0 Putative uncharacterized protein n=1 Tax=Chromob... 350 6e-95 UniRef50_Q21UE9 Diguanylate cyclase/phosphodiesterase with PAS/P... 350 6e-95 UniRef50_B2T9B2 Diguanylate cyclase/phosphodiesterase with PAS/P... 349 7e-95 UniRef50_B7GKR7 Multidomain signal transduction protein (Contain... 349 8e-95 UniRef50_B3E661 Diguanylate cyclase/phosphodiesterase with PAS/P... 349 8e-95 UniRef50_Q39WZ5 Diguanylate cyclase/phosphodiesterase with PAS/P... 349 9e-95 UniRef50_C6P1C1 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 348 1e-94 UniRef50_B9YY70 Diguanylate cyclase/phosphodiesterase with PAS/P... 348 2e-94 UniRef50_UPI0001699903 diguanylate cyclase/phosphodiesterase wit... 348 2e-94 UniRef50_Q2YCL1 Diguanylate cyclase/phosphodiesterase with PAS/P... 348 2e-94 UniRef50_D0KJW8 Diguanylate cyclase with PAS/PAC and GAF sensors... 348 2e-94 UniRef50_Q2BR92 Putative uncharacterized protein n=1 Tax=Neptuni... 348 2e-94 UniRef50_D2XIQ4 Putative signal transduction protein n=1 Tax=unc... 347 2e-94 UniRef50_A8H6Y6 Diguanylate cyclase/phosphodiesterase with PAS/P... 347 3e-94 UniRef50_C5UZT1 Diguanylate cyclase/phosphodiesterase with PAS/P... 347 3e-94 UniRef50_B1XYS1 Diguanylate cyclase/phosphodiesterase with PAS/P... 347 3e-94 UniRef50_B9Z8G8 Diguanylate cyclase/phosphodiesterase with PAS/P... 347 3e-94 UniRef50_Q1GXZ6 Diguanylate cyclase/phosphodiesterase (GGDEF & E... 347 3e-94 UniRef50_A0LAF7 Diguanylate cyclase/phosphodiesterase with PAS/P... 347 3e-94 UniRef50_C7LTY3 Diguanylate cyclase/phosphodiesterase with PAS/P... 347 3e-94 UniRef50_C4T5P6 Phosphodiesterase n=8 Tax=Yersinia RepID=C4T5P6_... 347 4e-94 UniRef50_A1KA22 GGDEF/EAL/PAS/PAC/GAF-domain containing protein ... 347 4e-94 UniRef50_Q39SC6 Diguanylate cyclase/phosphodiesterase (GGDEF & E... 347 4e-94 UniRef50_C0N5Y8 Putative uncharacterized protein n=1 Tax=Methylo... 347 4e-94 UniRef50_A0L914 Diguanylate cyclase/phosphodiesterase n=1 Tax=Ma... 347 5e-94 UniRef50_A8FY98 Signal transduction protein containing a membran... 347 5e-94 UniRef50_A8FYM5 Signal transduction protein containing a membran... 347 5e-94 UniRef50_C5V279 Diguanylate cyclase with PAS/PAC and GAF sensors... 347 5e-94 UniRef50_A4G4R7 Putative uncharacterized protein n=1 Tax=Hermini... 346 6e-94 UniRef50_A4VKZ2 Sensory box protein/GGDEF domain protein n=1 Tax... 346 7e-94 UniRef50_A1TZQ7 Diguanylate cyclase/phosphodiesterase with PAS/P... 346 7e-94 UniRef50_C6MET2 Diguanylate cyclase/phosphodiesterase with PAS/P... 345 9e-94 UniRef50_Q1H236 Response regulator receiver modulated diguanylat... 345 1e-93 UniRef50_Q1K2Z8 Diguanylate cyclase/phosphodiesterase with PAS/P... 345 1e-93 UniRef50_C6WYS6 Diguanylate cyclase/phosphodiesterase with PAS/P... 345 1e-93 UniRef50_B8GQW3 Signal transduction protein containing a membran... 345 2e-93 UniRef50_C6NZF1 Diguanylate cyclase/phosphodiesterase with PAS/P... 345 2e-93 UniRef50_Q47A14 Diguanylate cyclase/phosphodiesterase with PAS/P... 345 2e-93 UniRef50_Q3A0D5 Diguanylate cyclase/phosphodiesterase with PAS/P... 344 2e-93 UniRef50_A0L7S5 Response regulator receiver modulated diguanylat... 344 3e-93 UniRef50_C5S8G6 Diguanylate cyclase/phosphodiesterase with PAS/P... 343 4e-93 UniRef50_B1Y3M1 Diguanylate cyclase/phosphodiesterase with PAS/P... 343 4e-93 UniRef50_C4ZJQ2 Diguanylate cyclase/phosphodiesterase with PAS/P... 343 5e-93 UniRef50_Q15SE8 Diguanylate cyclase with GAF sensor n=1 Tax=Pseu... 343 5e-93 UniRef50_Q60BD0 Sensory box protein n=1 Tax=Methylococcus capsul... 343 6e-93 UniRef50_B9LZ98 Diguanylate cyclase/phosphodiesterase with PAS/P... 343 7e-93 UniRef50_B8KF61 Ggef/eal/pas/pac-domain containing protein n=1 T... 343 7e-93 UniRef50_C6CAQ7 Diguanylate cyclase with PAS/PAC and GAF sensors... 342 9e-93 UniRef50_B7JWK6 Diguanylate cyclase/phosphodiesterase with PAS/P... 342 1e-92 UniRef50_C6NZZ7 Diguanylate cyclase/phosphodiesterase with PAS/P... 342 1e-92 UniRef50_Q21XK7 Response regulator receiver modulated diguanylat... 342 2e-92 UniRef50_C0QQF1 FOG: EAL domain protein n=1 Tax=Persephonella ma... 341 2e-92 UniRef50_Q608F9 Sensory box protein n=1 Tax=Methylococcus capsul... 341 2e-92 UniRef50_C4UW07 Phosphodiesterase n=1 Tax=Yersinia rohdei ATCC 4... 341 2e-92 UniRef50_Q47Y83 Sensory box sensor/GGDEF/EAL domain protein n=1 ... 341 2e-92 UniRef50_C6CKZ2 Diguanylate cyclase/phosphodiesterase with PAS/P... 341 3e-92 UniRef50_B1XZW3 Diguanylate cyclase/phosphodiesterase with PAS/P... 341 3e-92 UniRef50_B1Y791 Diguanylate cyclase/phosphodiesterase with PAS/P... 340 4e-92 UniRef50_Q2BL35 Sensory box/GGDEF/GAF/EAL domain protein n=1 Tax... 340 4e-92 UniRef50_B9Z1H0 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 340 4e-92 UniRef50_C0Z6C0 Probable signaling protein n=1 Tax=Brevibacillus... 340 4e-92 UniRef50_Q2SF23 Predicted signal transduction protein containing... 340 5e-92 UniRef50_C6WYR4 Response regulator receiver modulated diguanylat... 340 5e-92 UniRef50_B8GM77 Putative uncharacterized protein n=1 Tax=Thioalk... 340 5e-92 UniRef50_Q5NYX6 Putative uncharacterized protein n=1 Tax=Aromato... 340 6e-92 UniRef50_Q3A1G1 Diguanylate cyclase/phosphodiesterase with PAS/P... 340 6e-92 UniRef50_B9ZNS8 Diguanylate cyclase/phosphodiesterase with PAS/P... 339 7e-92 UniRef50_Q0AAU4 Response regulator receiver modulated diguanylat... 339 8e-92 UniRef50_Q5NZD7 Putative signal transducer protein with histidin... 339 9e-92 UniRef50_C5V4D8 Diguanylate cyclase/phosphodiesterase with PAS/P... 338 1e-91 UniRef50_C6P417 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 338 1e-91 UniRef50_Q3AAV9 Sensory box/GGDEF domain/EAL domain protein n=6 ... 338 2e-91 UniRef50_Q0EX85 Putative uncharacterized protein n=1 Tax=Maripro... 338 2e-91 UniRef50_Q13IZ7 Putative diguanylate cyclase(GGDEF)/ phosphodies... 338 2e-91 UniRef50_Q2BPB1 Regulatory component of sensory transduction sys... 338 2e-91 UniRef50_C0N3Y7 Putative uncharacterized protein n=1 Tax=Methylo... 337 3e-91 UniRef50_Q47ED8 Response regulator receiver modulated diguanylat... 337 3e-91 UniRef50_B9R6G6 Putative uncharacterized protein n=1 Tax=Labrenz... 337 3e-91 UniRef50_B3E9L8 Diguanylate cyclase/phosphodiesterase with PAS/P... 337 3e-91 UniRef50_A4ACX6 Sensory box/GGDEF/EAL family protein n=1 Tax=Con... 337 4e-91 UniRef50_C5V4E4 Diguanylate cyclase with PAS/PAC sensor n=2 Tax=... 337 4e-91 UniRef50_A2SDI4 Signal transduction protein n=2 Tax=Proteobacter... 337 5e-91 UniRef50_A4TX60 PAS:GGDEF n=1 Tax=Magnetospirillum gryphiswalden... 337 5e-91 UniRef50_C4L987 Diguanylate cyclase/phosphodiesterase with PAS/P... 337 5e-91 UniRef50_C6ME82 Response regulator receiver modulated diguanylat... 337 5e-91 UniRef50_Q5NWP7 Sensory box protein n=1 Tax=Aromatoleum aromatic... 336 7e-91 UniRef50_Q2BN03 Sensory box sensor/GGDEF/EAL domain protein n=1 ... 336 8e-91 UniRef50_D2UAD2 Hypothetical c-di-gmp phosphodiesterase or signa... 336 9e-91 UniRef50_Q2YAT8 Diguanylate cyclase/phosphodiesterase with PAS/P... 335 1e-90 UniRef50_C4LDT9 Diguanylate cyclase/phosphodiesterase with PAS/P... 335 1e-90 UniRef50_A1ATC4 Periplasmic sensor diguanylate cyclase/phosphodi... 335 1e-90 UniRef50_C5T198 Diguanylate cyclase/phosphodiesterase with PAS/P... 335 1e-90 UniRef50_B3E8F7 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 335 1e-90 UniRef50_Q0AIX2 Diguanylate cyclase/phosphodiesterase with PAS/P... 335 2e-90 UniRef50_B0CD40 Diguanylate cyclase/phosphodiesterase with PAS/P... 335 2e-90 UniRef50_Q46T37 PAS:GGDEF n=1 Tax=Ralstonia eutropha JMP134 RepI... 335 2e-90 UniRef50_A9BRL9 Diguanylate cyclase/phosphodiesterase with PAS/P... 334 2e-90 UniRef50_B1XZA8 Diguanylate cyclase/phosphodiesterase with PAS/P... 334 2e-90 UniRef50_B2JCW5 Diguanylate cyclase/phosphodiesterase with PAS/P... 334 2e-90 UniRef50_A6SVJ0 Uncharacterized conserved protein n=4 Tax=Proteo... 334 2e-90 UniRef50_C0N1M8 Putative uncharacterized protein n=1 Tax=Methylo... 334 2e-90 UniRef50_Q1JVN0 Diguanylate cyclase/phosphodiesterase with PAS/P... 334 3e-90 UniRef50_A1ATR3 Response regulator receiver modulated diguanylat... 334 3e-90 UniRef50_Q0EYI6 Sensory box-containing diguanylate cyclase, puta... 333 4e-90 UniRef50_B3PKS7 Diguanylate cyclase/phosphodiesterase domain 2 (... 333 4e-90 UniRef50_C6XAD3 Diguanylate cyclase/phosphodiesterase with PAS/P... 333 5e-90 UniRef50_A1TX84 Response regulator receiver modulated diguanylat... 333 5e-90 UniRef50_B6BGA2 Diguanylate cyclase/phosphodiesterase n=1 Tax=Ca... 333 5e-90 UniRef50_Q47C60 Diguanylate cyclase/phosphodiesterase with PAS/P... 333 5e-90 UniRef50_Q2BHU8 PAS:GGDEF protein n=1 Tax=Neptuniibacter caesari... 333 6e-90 UniRef50_Q2BQ15 Diguanylate cyclase/phosphodiesterase domain 2 (... 333 6e-90 Sequences not found previously or not previously below threshold: UniRef50_Q1NQ51 PAS:GGDEF:EAL n=1 Tax=delta proteobacterium MLMS... 348 1e-94 UniRef50_Q47X88 Sensory box sensor/GGDEF/EAL domain protein n=2 ... 348 1e-94 UniRef50_C6BWZ0 Diguanylate cyclase/phosphodiesterase with PAS/P... 346 7e-94 UniRef50_Q3A4W5 Response regulator receiver modulated diguanylat... 340 3e-92 UniRef50_Q2BQI6 Putative uncharacterized protein n=1 Tax=Neptuni... 340 4e-92 UniRef50_D1B535 Diguanylate cyclase n=1 Tax=Sulfurospirillum del... 337 3e-91 UniRef50_A0KRF8 Diguanylate cyclase/phosphodiesterase with PAS/P... 336 6e-91 UniRef50_C5V180 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=... 334 2e-90 UniRef50_Q47Z22 Sensory box/GGDEF/GAF/EAL domain protein n=5 Tax... 334 3e-90 UniRef50_A1S1U8 Diguanylate cyclase/phosphodiesterase with PAS/P... 333 4e-90 >UniRef50_C4LEB0 Diguanylate cyclase with PAS/PAC and GAF sensors n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LEB0_TOLAT Length = 543 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 74/341 (21%), Positives = 134/341 (39%), Gaps = 8/341 (2%) Query: 2 SDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQK 61 +Q RV + L+K L+ ++ +++ +E + +D E + + Sbjct: 204 HEQAHNRVLELLSKGAPLDKILLAIVKSVETEYPEMMCSILLLDKEGKHLLTGATPSLPD 263 Query: 62 MYIP--ENFTVSWDYSLCKRAIDENCFFSDE---VPDRWGDCIAARN-LGITTFLSTPIH 115 Y + C A E W G+ S PI+ Sbjct: 264 FYNEAINGIEIGIGAGSCGTAAFTGKRVIVEDIATHPYWAAYRELTTLAGLGACWSEPIY 323 Query: 116 LPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSY 175 GT ++ ++++ A L A I++ VE LR++ ++ Sbjct: 324 GSADKVLGTFAIYHHDRHSPKPEDIKLIEASANLAAIAIERYHAVEALRQSEEKHRRLAH 383 Query: 176 TDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQV 235 D LTGLP R + L A+ + + F+DLD FK +ND FGH GD L +V Sbjct: 384 YDVLTGLPTRVLFSDRLKQAMRSAKRNKKNLALMFLDLDKFKPVNDTFGHAVGDRLLKEV 443 Query: 236 GERLNTLQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYP 294 R+ + + + R+GGDEF+++ + + ++ E+I+Q + + L + Sbjct: 444 ASRMLGCVRESDTVCRIGGDEFVILLHDVADAESAFNVAEKIRQALNQPFKLAGHQMNI- 502 Query: 295 GASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVA 335 S+GI D + AD+AMY+ K++ + V Sbjct: 503 SCSIGIALYPENGVDERTLTKNADMAMYRAKENGRDQAQVF 543 Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 20/182 (10%), Positives = 46/182 (25%), Gaps = 37/182 (20%) Query: 7 ARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPE 66 R+++ L K + E +R L + D + ++A ++++ + Y Sbjct: 67 RRLTRRLEKSRQQEDQLRTLYAAI----DQSPASVVIAGLDANIRYVNPSFTEITGYSLH 122 Query: 67 NFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLC 126 + D + W S+ G Sbjct: 123 EVMGHNPS-----VLHSGLTSPDVYDEMWHK-----------------LTHGESWSGEFI 160 Query: 127 AASSEKRQ-WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNR 185 W + + G + QY+ + + + Q++ NR Sbjct: 161 NRRKNGEVYWEQAHISPVFNDDGEVTQYVAVKLDITDRKRREQ--HEQAH--------NR 210 Query: 186 RA 187 Sbjct: 211 VL 212 >UniRef50_A7BSH2 Diguanylate cyclase/phosphodiesterase n=1 Tax=Beggiatoa sp. PS RepID=A7BSH2_9GAMM Length = 604 Score = 397 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 72/328 (21%), Positives = 136/328 (41%), Gaps = 29/328 (8%) Query: 10 SQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFT 69 + + +++ E +R + V + + + D + + A + Y + Sbjct: 301 LEDVTEKRQAEENLR----LAATVFETTTEAILVTDANNHIIIVNPAFTTITGYTFDEV- 355 Query: 70 VSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAAS 129 V + + F+ W L +G + G + Sbjct: 356 VGKQPKILSSGHHDAEFY----QQMWTS-----------------LLQEGKWQGEIWNRR 394 Query: 130 SEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAI 188 + E + ++ I QY+ + + ++ ++ Q++ D+LT LPNR Sbjct: 395 KNGEIYVEWISITTIRDANHQIVQYVAVFTDITKRKQNEELILHQAHHDALTNLPNRILF 454 Query: 189 FENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEV 248 + L A+ ++ + FIDLD FK +ND GH+ GDL L +V +RL + + Sbjct: 455 VDRLKQALLTAKRHQGRVAVMFIDLDRFKSVNDTLGHDFGDLLLKEVAQRLIACIRESDT 514 Query: 249 IGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPET 307 + RLGGDEF VV +N +DI + +R+ + + + D + + G S+GI + Sbjct: 515 VARLGGDEFTVVLTQIQNISDIRIIAQRMLKSLSQPFIQKDNEAFIGG-SIGIAFFPKDG 573 Query: 308 TDADSALHAADIAMYQEKKHKQKTPFVA 335 +A++ + ADIAMYQ K+ + T Sbjct: 574 QEAETLVKKADIAMYQAKQEGRNTSRFY 601 Score = 58.5 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 21/181 (11%), Positives = 51/181 (28%), Gaps = 38/181 (20%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 VS+ + + + E ++ + V + + + +D + ++ Y E Sbjct: 52 VSRDITERKQAEDALKHERDFTNAVINTAGSLVIVLDRWGHIVRFNNTCSTLTGYTLE-- 109 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTF------LSTPIHLPDGSFY 122 EV +R+ + I + L I Sbjct: 110 ---------------------EVKNRYIWNFLLTDDKIESCKQYFKNLVVEISTSQRY-- 146 Query: 123 GTL-CAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTG 181 + + R+ + + +L + I + + + A+ L +LT Sbjct: 147 -EIEWVMKDKTRRLIDWSHTILTNEHHEVDYVIGTGIDITERKRADETLAR-----TLTE 200 Query: 182 L 182 L Sbjct: 201 L 201 Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 18/164 (10%), Positives = 39/164 (23%), Gaps = 27/164 (16%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVS 71 + + + + + + L LE++ D + + + R I Y + Sbjct: 183 DITERKRADETLARTLTELEIILDNSPVGIAFLGQKQRFIRINRKLEKMCGYTEQELRNH 242 Query: 72 WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 L F +D + + DG+ + Sbjct: 243 TPKILYFSPKGYKTFGNDNSATHEMEQF--------------VRRKDGT---SFWCHVKV 285 Query: 132 KRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSY 175 K +I V + R+A L + Sbjct: 286 KEI----------DPNDPAQGFIWSLEDVTEKRQAEENLRLAAT 319 >UniRef50_Q2W807 Predicted signal transduction protein n=4 Tax=Magnetospirillum RepID=Q2W807_MAGSA Length = 880 Score = 393 bits (1010), Expect = e-108, Method: Composition-based stats. Identities = 73/338 (21%), Positives = 141/338 (41%), Gaps = 25/338 (7%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 + R+ ++L + + R+ L + V + + VD +++ + A Y Sbjct: 295 VHRLDEALKERDAALLRSRKDLNLARKVIEASLDGIMIVDSTQKIEFVNPAFTHMTGYTA 354 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 E + + ++ K + F+ + + G + Sbjct: 355 EEI-IGKNPNVLKSGHHDETFYKHMYT---------------------VLEAQDYWQGEI 392 Query: 126 CAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 + E V++ G I QY + + + ++ + +Y D LT LPN Sbjct: 393 WNRRKNGEIYPEWLTINVIRDDTGDITQYAAIFSDITERKKTEERIKNLAYFDVLTALPN 452 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 RR + L + A ++ I F+DLD FK IND GH GD L++ R++ + Sbjct: 453 RRLFTDRLQIAIANAHRHGQQLAIMFLDLDLFKRINDSLGHGVGDQVLVETAARISHCVR 512 Query: 245 NGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 G+ + RLGGDEF V+ ++ D++ L ER+ ++ + + D +LY S+GI Sbjct: 513 EGDTVARLGGDEFTVLLPELDHLEDVAKLAERVIAHVKQPFLVDDNELYVTT-SIGIAVY 571 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + T ++ + AD AMY+ K + + + A+++ Sbjct: 572 PEDGTTVEALIKNADTAMYRAKDLGRNSYQLYTAAMNA 609 >UniRef50_C6X6V4 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6X6V4_METSD Length = 1126 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 71/338 (21%), Positives = 133/338 (39%), Gaps = 29/338 (8%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 + V + ++ E+ +R + V D + + D R+ + A Y Sbjct: 545 LVGVMLDITASKAAEADLR----LARQVFDNTAEGIVITDPAFRVLEVNQAYQQITGYDK 600 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 E + S+ + + E ++ +G + G + Sbjct: 601 EEI-IGKLPSVMQAGLHEAAYYEGIWQT---------------------LRREGQWVGEI 638 Query: 126 CAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 + E + + G + Y+ + Q + + L + D+LT LPN Sbjct: 639 WNRRKSGESYPEWLSISQVADAKGSVQNYVAVFTDITQRKLSEERLQFLANHDALTHLPN 698 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R + E + A+ I + FIDLD FK+IND GH +GD+ L + +RL + Sbjct: 699 RALLQERIDQALFRAQRNKTAIAVLFIDLDRFKIINDTLGHQTGDMLLQEAAKRLKECLR 758 Query: 245 NGEVIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 + + R GGDEF+V+ + + D ++++ +I + + L +L+ AS+GI Sbjct: 759 ETDTVARQGGDEFVVLVEDCGDTDYLNTIARKIMATLAQPFILVGRELFI-SASIGISVY 817 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + D S L AD AMY+ K+ + T ++ Sbjct: 818 PDDGLDTASLLKHADAAMYRAKESGKNTFRFYAAEANT 855 Score = 42.7 bits (100), Expect = 0.016, Method: Composition-based stats. Identities = 14/165 (8%), Positives = 48/165 (29%), Gaps = 22/165 (13%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 + ++ + E+ + + + + + + + + + ++ ++ + Sbjct: 419 LIIDISSRKKAEAELVKSQQDYRELVESVQAIVWRAIPGGKFTFV--SKEAEALLGYPLA 476 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTF-LSTPIHLPDGSFYGTLCA 127 + D I + D + +L + +F + DG Sbjct: 477 QWTTDPGFWVDKIH------PDDRDWVVEYCRTESLKLQSFDFDYRMIAADGRV------ 524 Query: 128 ASSEKRQWSERAEQVLQLFAG-LIAQYIQKEALVEQLREANAALI 171 W + +V+ + A+ + + + A A L Sbjct: 525 ------VWMKDIVKVIPNMSNTRPAELVGVMLDITASKAAEADLR 563 >UniRef50_Q31GH8 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=3 Tax=cellular organisms RepID=Q31GH8_THICR Length = 1466 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 73/338 (21%), Positives = 132/338 (39%), Gaps = 28/338 (8%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 + +++ + E+ +E+ V + + D ++ + A + Y Sbjct: 895 LWHGFITDISQHKKTEAQ----IELASKVFEQSREGIMITDSNQKILMVNEAFSEISGYS 950 Query: 65 PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGT 124 E R + + + W G + G Sbjct: 951 VEETLGKTP-----RMLASGRHSREFYQNVWKSIK-----------------EKGHWQGE 988 Query: 125 LCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLP 183 + + E + +G + +Y+ + +++E+ + ++ D LTGL Sbjct: 989 IWNRRKNGEIFPEWLSISRGLDTSGNVTEYVGIFNDISKVKESEEKIKHLAHYDPLTGLV 1048 Query: 184 NRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQ 243 NR + + L S A N + + FIDLD+FK +ND GH GD LI+VG+R+ + Sbjct: 1049 NRELLMDRLNHSISTADRNNTPLALLFIDLDHFKNVNDTLGHQVGDQLLIEVGQRILKIL 1108 Query: 244 QNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 ++ + I R GGDEF+VV + + E+I + I + +L L+ S+GI Sbjct: 1109 RDEDTIARQGGDEFIVVLPDTGENGAVHVAEKILESISDQLNLKPYKLFI-TPSIGIAVY 1167 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + DADS L AD AMYQ K + + + Sbjct: 1168 PQDGKDADSLLKNADTAMYQAKNDGRNVYRFFTMEMQA 1205 Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 17/164 (10%), Positives = 42/164 (25%), Gaps = 20/164 (12%) Query: 10 SQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFT 69 Q + + + L L + L + + D E + + Sbjct: 460 VQDVTELKHLAELNIEHQNQLNALVHTIPDLVWLKDTEGLYLACNPSFERFFGAKEADII 519 Query: 70 VSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAAS 129 DY +A+ + +D + I + + L + Sbjct: 520 GKTDYDFVDKALADFFRENDCNAMAAEESI-----------------ENEEW---LTFSE 559 Query: 130 SEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQ 173 + R + ++ G + + + + +E A L Sbjct: 560 NGYRGLFSTIKTPMKNEEGQVIGVVGVARDISKRKEDEAQLERL 603 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 62/177 (35%), Gaps = 16/177 (9%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 + ++++ + +L ++ E+ M+ ++ +D E L H + Y Sbjct: 608 SAMNHTNEAIIRSTDQLTLFSKVCEIAVREGGMKMAWIGTIDKETNLVHPVVRFGKNSEY 667 Query: 64 IPENFTVSWDY------SLCKRAIDENCFF------SDEVPDRWGDCIAARNLGITTFLS 111 + + +S D AI ++ + +D W + A+ G + S Sbjct: 668 L-DGLEISIDETAETGQGPTALAIRQDQPYWCQDFQADSHTQPWHER--AKRFGWQSSAS 724 Query: 112 TPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANA 168 P+ + GTL S K + E + +L A I + ++ + A Sbjct: 725 VPL-HQNSEVIGTLNLYSDRKEAFDEPIQHLLLEMAIDIGFALNDFYHAKERKIIEA 780 >UniRef50_C6NZE4 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6NZE4_9PROT Length = 727 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 83/351 (23%), Positives = 147/351 (41%), Gaps = 33/351 (9%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLE---MLEMVTDMESTYLTKVDVEARLQHIMFAR 57 M ++A +++++ ++ + R L++ +LE V + + + D + + + A Sbjct: 142 MLQPVLAHLAKAIVLCRNNDVHTRGLIDQRDLLETVFESSYSGVMITDAKGNIVEVNPAF 201 Query: 58 NSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLP 117 Y E + L D + + W D L Sbjct: 202 TRITGYQSEEVQGRNPHLLASGRHDHTFY-----REMWDD-----------------ILA 239 Query: 118 DGSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYT 176 +G + G + + ++ +G + Y+ + V + +EA A + ++ Sbjct: 240 NGHWEGEIWDRRKNGEVYPSWMNINPVRDISGNLLYYVGIFSDVTKRKEAEAQIHQLAFY 299 Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 D LT LPNRR + E L FS+ H + F+DLDNFK +ND GH+ GD LI+V Sbjct: 300 DPLTELPNRRLLNERLQQAFSVGARSGHHGAVLFLDLDNFKTLNDTKGHDIGDQLLIEVA 359 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVS------LNNENADISSLRERIQQQIRGEYHLGDVD 290 +RLN+ +NG+ + RLGGDEF+VV + + E+I+ + Y L + Sbjct: 360 KRLNSCVRNGDTVARLGGDEFVVVLESLSSVPDEAATQADLVAEKIRYALSQPYQLANH- 418 Query: 291 LYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 ++ S+G+V + L AD AMYQ K + P + + Sbjct: 419 VHRTTPSIGVVMFRGHQQSLEEVLKFADTAMYQAKTAGRNAIRFYDPVMQA 469 >UniRef50_Q47IA0 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Dechloromonas aromatica RCB RepID=Q47IA0_DECAR Length = 925 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 71/336 (21%), Positives = 137/336 (40%), Gaps = 29/336 (8%) Query: 7 ARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPE 66 Q +++ + E+ ++ ++ MV + + D R+ A Y P+ Sbjct: 331 EGTVQDISERKRTEAHLQ----LMAMVFSNSNEAIIVTDASNRIIATNPAFTCLTGYQPD 386 Query: 67 NFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLC 126 + + + + F D W T L +G++ G L Sbjct: 387 DV-IGKNPRILSAGTTPTEVF----SDMW------------TCL-----HREGAWQGELW 424 Query: 127 AASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNR 185 + + + +++ G I +I + +L+ + ++ D+LT L NR Sbjct: 425 DRKKNGEAYPKWLSISLVRDEDGQIRNHIGSFIDISELKATQERIRHLAHHDTLTNLANR 484 Query: 186 RAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQN 245 ++ E L + + ++ + IDLD FK IND GH +GD L+QV +RL+ + Sbjct: 485 FSLHEKLAQALAFCKRNRMQLALMLIDLDRFKTINDTLGHQAGDELLVQVAKRLSHAVRE 544 Query: 246 GEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVD 304 +++ RLGGDEF++ AD + L + I ++I Y + +L S+GI Sbjct: 545 SDIVARLGGDEFVIALPGIGSPADAAHLADDITREISAPYLIKGQELR-TSPSIGICVYP 603 Query: 305 PETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + ++ L AD+AMY K + + ++ Sbjct: 604 GDGSEIGDLLKNADVAMYHAKANGRGNYQFFTEDMN 639 Score = 74.3 bits (182), Expect = 6e-12, Method: Composition-based stats. Identities = 16/174 (9%), Positives = 45/174 (25%), Gaps = 19/174 (10%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 + + +I + ++ ++ + + + + S + + + A Sbjct: 197 LDESVIEGFIEDISVRRTTLEALEAAEQRYRNIFEHASEGIFQSTRDGHYLAANPALAKL 256 Query: 61 KMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGS 120 Y ++ I+ + + + G + ++ DGS Sbjct: 257 YGYDNAQALMTDLAD-----IERRLYVQPNRREEF--LTLIEKNGAILNFESEVYRRDGS 309 Query: 121 FYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 R W V+ G Y + + + A L + Sbjct: 310 ------------RIWISENAHVVFGPQGEFICYEGTVQDISERKRTEAHLQLMA 351 >UniRef50_C5V1I4 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Gallionellaceae RepID=C5V1I4_9PROT Length = 935 Score = 386 bits (992), Expect = e-106, Method: Composition-based stats. Identities = 71/334 (21%), Positives = 129/334 (38%), Gaps = 29/334 (8%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 ++ + + + E +R + V + + + D E + + A Y + Sbjct: 370 LTHEIKQRKEAEQGLRLSAK----VFESNTEAIMITDAEQNIVMVNQAFTQITGYGADEV 425 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + L F+ F + + G + Sbjct: 426 -LGQRPKLLSSGRHGPEFYE-------------------AFWHA--LRANDLWRGEIWNK 463 Query: 129 SSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + E L+ I+ Y+ + + ++ + + D LTGLPNR Sbjct: 464 RKNGEIFPEWVTISALRDETSQISHYVAVFLDITERKKEEERINYLANYDVLTGLPNRYL 523 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + + + FS A+ N K+ + FIDLD FK IND GH+ GD L V RL T + + Sbjct: 524 LSDRIEQAFSSAQRNNFKVAVLFIDLDYFKNINDSLGHDIGDALLKLVAARLKTCLRRSD 583 Query: 248 VIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 I RLGGDEF+ + + + ++ + E++ + + ++ LG+ L S+GI + Sbjct: 584 TIARLGGDEFVALLSELDSSEEVIFVAEKMIESLTEKFTLGEYQLSI-TPSIGICIYPDD 642 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + L AD+AMYQ K + P ++ Sbjct: 643 GETSVELLRNADLAMYQAKDDGRNNFKFYSPDMN 676 >UniRef50_Q21SS1 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21SS1_RHOFD Length = 571 Score = 386 bits (992), Expect = e-106, Method: Composition-based stats. Identities = 68/332 (20%), Positives = 128/332 (38%), Gaps = 25/332 (7%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 I + ++L K + + +Q + V + + + E+ ++ + A ++ Sbjct: 257 IRELRETLKKRERSLVISKQHQRLAAKVFESTFEGIMITNAESVIESVNPAFTQITGFMA 316 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 + ++ + F+ D G + G + Sbjct: 317 HEV-IGKTPAILSSGKHQEIFYRKMRED---------------------IAATGHWQGEI 354 Query: 126 CAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 + E + G + Y+ + + + A ++ ++ D LTGLPN Sbjct: 355 WNRRRTGETYPEWLTINAVSNDDGEVTHYVGVFSDITTRKAAEEQVLFLAHHDGLTGLPN 414 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R + L A K+ + F+DLDNFK ND GH+ GD L V +RL + Sbjct: 415 RALFADRLHQAIVHAHRDRAKVAVMFLDLDNFKQTNDTLGHHIGDQLLQMVAQRLTNCMR 474 Query: 245 NGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 G+ + RLGGDEF VV + N DI+ L ++I + L ++ S+G+ Sbjct: 475 EGDTVARLGGDEFTVVLESITNTGDIAYLSQKIIDTVSHPLLLDGHEIAV-TCSIGVSVY 533 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVA 335 ++ ++D + AD AMY+ K+ + Sbjct: 534 PDDSEESDDLIKYADTAMYRAKEGGRNNFRFF 565 >UniRef50_A0L9S8 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9S8_MAGSM Length = 971 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 66/337 (19%), Positives = 132/337 (39%), Gaps = 29/337 (8%) Query: 7 ARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPE 66 V + + + E +R + +++ + L + +++ + A + Y + Sbjct: 393 HGVLHDITERRKGEHDLR----LAQVLFRTTNEALMISSRDNKIEMVNPAFSRITGYQLD 448 Query: 67 NFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLC 126 + + W DG++ G + Sbjct: 449 EVLGKGPD-----LLQSGRHDAPFYTQMWHALQ-----------------QDGAWEGEIW 486 Query: 127 AASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNR 185 + E + + G QY+ + + + ++A ++ Q+ D LT LPNR Sbjct: 487 NRRKSGETYPEWLSIATVTNDKGETVQYVAAFSDITKRKQAEETILHQANYDFLTDLPNR 546 Query: 186 RAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQN 245 + L T ++ ++ + FIDLD FK +ND GHN GD L +V RL + Sbjct: 547 NLFHDRLQTELKRSQRSGQQVALLFIDLDRFKFVNDTLGHNVGDQLLREVAIRLGHCVRE 606 Query: 246 GEVIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVD 304 + I RLGGDEF V+ ++ L + + ++ Y + D +L+ AS+GI Sbjct: 607 SDTIARLGGDEFTVILPELHGPEGVARLAQGMIDKLEERYCIQDHELFI-SASIGITIYP 665 Query: 305 PETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + + + AD+AMY+ K++ + + +++ Sbjct: 666 EDADNMMDLVKNADVAMYRAKENGRGSFCFYTAEMNA 702 >UniRef50_A0L8P4 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8P4_MAGSM Length = 754 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 72/339 (21%), Positives = 135/339 (39%), Gaps = 29/339 (8%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 Q R+S +A ES +R + + V + S + D + + I A + Sbjct: 167 QSNERLSNEVAVRMRAESGLRLIHK----VFENTSEAIILTDPQGMILDINPAFTEITGF 222 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 E S D + + W +G + G Sbjct: 223 SREEALGHNPRSFKSDRHDATFY-----TNMWRK-----------------IAEEGFWQG 260 Query: 124 TLCAASSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGL 182 + + + ++ AG + YI + + + + L +Y D+LT L Sbjct: 261 EIWDRRKNGEIYPKRLTINAVRNQAGEVENYIGIFSDISESKATELKLERLAYYDALTQL 320 Query: 183 PNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTL 242 PNR + L F A+ ++ + FIDLD FK +ND GH++GD L V +RL Sbjct: 321 PNRMLFHDRLEHEFYNAQRHRKQVAVFFIDLDRFKQVNDTLGHSAGDELLQHVAQRLEGC 380 Query: 243 QQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIV 301 + + + R+GGDEF V+ + +N ++ + ++ ++++ + D++ GAS+GI Sbjct: 381 VRAADTVARMGGDEFTVILADISDNESVARVARKVLEELQKSISIKGHDIFV-GASIGIA 439 Query: 302 EVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 D ++ AD+AMY+ K+ + ++ Sbjct: 440 LYPDNGNDVETLTKNADMAMYRAKESGRGNYKFFSEEMN 478 >UniRef50_B0TF94 Predicted signal transduction domain protein n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TF94_HELMI Length = 853 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 67/332 (20%), Positives = 129/332 (38%), Gaps = 28/332 (8%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVS 71 ++ + +E + + V + + + D ++ + A Y E+ + Sbjct: 252 DISDRKKVEERL----LLAAKVIETTTEGIMITDAGGVIESVNPAFCRSTGYS-ESEAIG 306 Query: 72 WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 + K + F+ L G + G + Sbjct: 307 NSPRILKSGRHDGEFY-------------------RKMWKA--LLETGQWQGEIWNRRKS 345 Query: 132 KRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFE 190 ++ ++ G QY + + + + + Q+Y D+LT LPNR + Sbjct: 346 GELYAAWLTISAIKDSHGRTTQYAAIFSDITEDKRNQERIKHQAYHDALTDLPNRLLFID 405 Query: 191 NLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIG 250 LT + A + + + F+DLD FK IND +GH GDL L V RL ++ + + Sbjct: 406 RLTQAIAQATRNCYMLAVLFLDLDRFKQINDTYGHALGDLLLQGVAGRLRRAVRDSDTVA 465 Query: 251 RLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTD 309 RLGGDEF ++ D + + ++I +R + + + S+GI + + Sbjct: 466 RLGGDEFTILLPQIGSVEDAAKVAQKILASLRQPWSFEGIPSFCITTSIGIAVCPTDGEE 525 Query: 310 ADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 A++ +H AD AMY+ K + + P L++ Sbjct: 526 AETLMHNADAAMYRAKAQGRNHYQLYTPELNA 557 Score = 48.5 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 17/166 (10%), Positives = 35/166 (21%), Gaps = 16/166 (9%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 ++ + + L + Q E ++ L V L +D E RL + Sbjct: 114 VLRQRVRRLLQAQHTEKALKARETQLSAVASALGEGLIVLDAEGRLTFMNP--------E 165 Query: 65 PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGT 124 E L + I D + I + Sbjct: 166 AERLLGWSLPELLGKKIHSIIHNRRPEGDPIAEADCLVLKTIGAGETYRSD--------E 217 Query: 125 LCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAAL 170 + + I + + ++ L Sbjct: 218 EYFTRKDGALFPVSLVSTPLRVNDRITGAVTAFHDISDRKKVEERL 263 >UniRef50_A0LKD9 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LKD9_SYNFM Length = 844 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 72/336 (21%), Positives = 127/336 (37%), Gaps = 29/336 (8%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 + + + + ++ E +R V + + + D A + + A + Y ++ Sbjct: 267 HIVEDITERKNFEDNLRLS----ATVFEGSTEAIIITDARANILRVNSAFTAMTGY-ADH 321 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 V + L K F+ +T G + G + Sbjct: 322 EVVGKNPRLLKSGNHHEEFY-------------------RAMWAT--LSSTGQWQGEIWN 360 Query: 128 ASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 + ++ I Y+ + +EA L Q+ D+LTGLPNR Sbjct: 361 RRKNGDIFPAWLTLCAVRNSEDKITNYVGISRDITLRKEAEERLSYQASHDALTGLPNRA 420 Query: 187 AIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNG 246 + LT + A H+ I F+DLD FK+IND GH GD L V +RL + Sbjct: 421 RFHDRLTHALARAGRDRHEFAILFLDLDRFKVINDTLGHTVGDFLLQGVTKRLLGGTRES 480 Query: 247 EVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDP 305 + + R GGDEF+++ + D + RI + + + +++ G S+GI Sbjct: 481 DTLARWGGDEFIILLESIRGAEDAAVAARRILDVLAEPFSVQGHEVFVSG-SIGISVYPR 539 Query: 306 ETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + D + L ADIAMY+ K + + + Sbjct: 540 DGEDVQALLRCADIAMYRAKDSGKNDYQFYESTMST 575 Score = 63.2 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 20/173 (11%), Positives = 46/173 (26%), Gaps = 23/173 (13%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 +A + + + +R+ E + D + V+ + RL I + Sbjct: 137 SALALYRERVIRHHKTRE-LRESEEKFRVTFDQAPVGIAHVNADGRLLLINRRLCEMLGF 195 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGIT-TFLSTPIHLPDGSFY 122 S LC + + + G+ P+ DG Sbjct: 196 QERELIESSFPDLC---------VPENRDVHERELKKSVEQGLEYHGFEIPLVHKDGRII 246 Query: 123 GTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSY 175 W++ ++ AG+ +I + + + L + Sbjct: 247 ------------WTKLTLSPMKDAAGVPKYFIHIVEDITERKNFEDNLRLSAT 287 >UniRef50_A1K4Z0 EAL/GGDEF/PAS/PAC-domain containing signalling protein n=2 Tax=Rhodocyclaceae RepID=A1K4Z0_AZOSB Length = 880 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 76/339 (22%), Positives = 128/339 (37%), Gaps = 25/339 (7%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 +A ++ L + L L + V S + D +AR+ + A Y Sbjct: 294 ALAGANEHLEERIQTLRLTESELHLYANVFTNASEGMAITDAQARIVAVNPAFTDITGYS 353 Query: 65 PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGT 124 E L D + +T G + G Sbjct: 354 IEEIHGRTPAVLASGRQDAAFY--------------------REMWAT--LGKRGQWQGE 391 Query: 125 LCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLP 183 + + E + + G ++ YI + + +E+ A + ++ D+LTGLP Sbjct: 392 IWNRRRSGEIYPEWLSITAITEGDGGVSHYIGIFSDITDRKESEARIRHLAHHDALTGLP 451 Query: 184 NRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQ 243 NR + + L AR + + + F+DLD FK IND GH GD L QV +R Sbjct: 452 NRLLLQDRLGQAILKARRNSTQAAVLFLDLDRFKTINDTLGHEIGDGLLRQVTQRCLGAV 511 Query: 244 QNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVE 302 + + + R GGDEF++V + E+ D ++ +I + LG +L G S+GI Sbjct: 512 RETDTVARQGGDEFVIVLPDLEHGQDAGTIARKILAALTEPCRLGPHELTVTG-SIGIAL 570 Query: 303 VDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + D L AD AMY+ K + +++ Sbjct: 571 YPGDGADPSMLLRNADAAMYRAKADGRNGFQFYAADMNT 609 >UniRef50_C7RNA9 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RNA9_9PROT Length = 1399 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 67/341 (19%), Positives = 131/341 (38%), Gaps = 30/341 (8%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 + I+ + + +++ + E+ +R L + + + D + R+ + A Sbjct: 825 EVILHTLWRDISERRVTETRLRLLAAA----FEHSAEAIMVSDRDNRILEVNDAFCRLTG 880 Query: 63 YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY 122 Y + S R + ++E W G + Sbjct: 881 YAADEVRGSDP-----RLLSSGRTSAEEYRTMWQA-----------------INSTGHWQ 918 Query: 123 GTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTG 181 G + + + + + ++ G YI + + + A + ++ D+LT Sbjct: 919 GEVWDRRKDGSYYPKWLSISTIRGAEGNTEYYIGSFVDISERKAAEEKISHLAHFDTLTD 978 Query: 182 LPNRRAIFENLTTLFSLARH--LNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERL 239 LPNR + L + AR + + F+DLD FK IND GH+ GD L++V RL Sbjct: 979 LPNRSNLQGRLDQALASARREGHGRSVAVMFLDLDRFKNINDTLGHHVGDALLLEVAARL 1038 Query: 240 NTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLG 299 + ++ +V+ RLGGDEF+VV + + +I + + Y + L+ S+G Sbjct: 1039 RSSVRDSDVVARLGGDEFVVVLTGADALAAERVAGKILKALSRAYQIEGHALHSTS-SIG 1097 Query: 300 IVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 I + + + AD AMY K + +++ Sbjct: 1098 IAVFPADGESVEVLMQNADAAMYHAKSAGRNNVQFFTASMN 1138 Score = 56.6 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 52/173 (30%), Gaps = 22/173 (12%) Query: 2 SDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQK 61 S+Q A+V L + + LE+ + + + + ++ L + A ++ Sbjct: 321 SEQREAKVVADLVERDRQLRANSERLEIFQRLAENAGQGIGMAQLDGSLLYANPA--LRR 378 Query: 62 MYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSF 121 M DYS F+S E +R + P+ LP G + Sbjct: 379 MIDMPQGAACSDYSF-------KQFYSREEANRLQHAVL------------PMLLPAGQW 419 Query: 122 YGTLCAASSEKRQWSERA-EQVLQLFAGLIAQYIQKEALVEQLREANAALIAQ 173 G + S R V+ A A + + +E Sbjct: 420 TGEIELRSLSGRTTPAIHTLFVVHNTADEPPVIATVLADISERKEMEERNRQL 472 Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 15/162 (9%), Positives = 39/162 (24%), Gaps = 34/162 (20%) Query: 32 MVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEV 91 + + + A ++++ + Y R + SD Sbjct: 599 QAVEQSPVAIVITNRNAEIEYVNPSFTRVTGYSRLEAIGQNP-----RILQSGEAPSDTY 653 Query: 92 PDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKR-QWSERAEQVLQLFAGLI 150 W + + + G W + + + G + Sbjct: 654 RSLWQTLLEGK-----------------VWTGLFHNRRKNGELFWEKASIAPIIGDHGEV 696 Query: 151 AQYIQKEALVEQLREANAALI--AQSYTDSLTGLPNRRAIFE 190 Y+ + V + A+ L +++ RR + Sbjct: 697 THYLAVKEDVTERLRADKLLQESEEAF---------RRLFED 729 >UniRef50_C6NZ79 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6NZ79_9PROT Length = 923 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 71/334 (21%), Positives = 130/334 (38%), Gaps = 28/334 (8%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 + + + + E+ +R + V D + D R+ + + + Y E Sbjct: 354 GTVRDITRYKQEEATLR----LAARVFDSSGEAILITDENVRVVAVNHSFVAMSGYRSEE 409 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 + + + F+ G + G + Sbjct: 410 VM-GKNPRMLSSGRHDAEFY-------------------RAMWDD--INQHGYWQGEIWD 447 Query: 128 ASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 R + + + ++ G + YI + EA + +Y D LTGLPNR Sbjct: 448 KHKSGRIYPKWMSITAVRDEHGKVVNYISIARDTTEQTEAEKNIHFLAYYDVLTGLPNRT 507 Query: 187 AIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNG 246 + + L + ++A H+ + F+DLD FK IND GH+ GD L V R+ + G Sbjct: 508 LLRDRLGQMIAVAHRDKHQFSLIFLDLDRFKYINDSMGHSVGDRLLQSVALRIQDCVREG 567 Query: 247 EVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 + + RLGGDEF+V+ + S + +++ + Y L + AS+GI + Sbjct: 568 DTVARLGGDEFIVLLREAGESAASVVAQKLLIALATPYDLDGQ-VISTQASIGISIYPDQ 626 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 DAD+ + AD+AMY+ K+ + P ++ Sbjct: 627 AQDADTLIKNADMAMYRAKEEGRNNFQFFVPEMN 660 >UniRef50_A0L9T5 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Proteobacteria RepID=A0L9T5_MAGSM Length = 1275 Score = 379 bits (974), Expect = e-104, Method: Composition-based stats. Identities = 72/335 (21%), Positives = 132/335 (39%), Gaps = 29/335 (8%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 Q + + + E + + +M+ D + D + + + A Y + Sbjct: 697 GTLQDVTRRKMAEEGL----VLAKMIFDNAGEAIVITDAQGDITDVNPAYQRIMGYTRDE 752 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 V + S+ K + F+ W + L +G + G + Sbjct: 753 I-VGQNPSILKSGRHDEQFYE----QMWNE-----------------MLSEGHWQGEIWD 790 Query: 128 ASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 + + ++ G+I+ ++ + Q +E L +Y D LT LPNR Sbjct: 791 RRKSGEIFPKWLTIDAIRDEQGVISNFVGLFMDITQQKETEEQLEKLAYYDPLTELPNRA 850 Query: 187 AIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNG 246 + L L+ + + FIDLD FK +ND GH+ GD LIQV R+ + Sbjct: 851 LFRDRLEQEMRLSARGGKSLGLFFIDLDRFKYVNDSLGHDKGDDLLIQVAGRIKHHLRTS 910 Query: 247 EVIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDP 305 + + RLGGDEF V+ E D++ + I + + + L +++ G S+GI Sbjct: 911 DTVARLGGDEFTVILPGIEQTNDVARIAGAIVKSLGEVFVLQGHEVFIGG-SIGIAMHPD 969 Query: 306 ETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + D ++ AD AMY+ K+ + T ++ Sbjct: 970 DGEDYETLTKHADTAMYRAKEEGRGTYKFFTSDMN 1004 >UniRef50_Q2W1Z2 Hypothetical 1041 kDa protein in hypE 3'region n=2 Tax=Proteobacteria RepID=Q2W1Z2_MAGSA Length = 1510 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 70/331 (21%), Positives = 128/331 (38%), Gaps = 28/331 (8%) Query: 10 SQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFT 69 S + + E +R + V D +T D + + + Y + Sbjct: 937 STDVTMKHHAEEQLR----LAAKVFDRAGEAITITDSSGNIITVNDSFCRITGYSHQEV- 991 Query: 70 VSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAAS 129 + + + F+ + I G + G + Sbjct: 992 IGKNPRFLQSGKHGKDFYD-------------------AMWRSLI--EQGCWQGEIFNRR 1030 Query: 130 SEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAI 188 + E ++ G + Y+ + + ++ + + + D LTG+PNR + Sbjct: 1031 KNGEIYPEWLTVNSVRDENGSVVNYVAIFSDISAIKSSQRRIEFLATHDELTGIPNRSLL 1090 Query: 189 FENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEV 248 + L + A+ K+ + FIDLDNFK+IND GH+ GD L Q ERL ++ + Sbjct: 1091 MDRLKHAVAQAKRQKTKLAVLFIDLDNFKVINDSLGHDVGDQLLKQATERLKHCVRDSDT 1150 Query: 249 IGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETT 308 + RLGGDEF+ V + ++S+ RI + + + D L+ AS+GI + Sbjct: 1151 LARLGGDEFVAVLTDVSLEKVNSVAARIVDFLGASFSINDKSLFV-SASIGISVFPDDGQ 1209 Query: 309 DADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 D+ + L AD AMY+ K+ + + Sbjct: 1210 DSLTLLKHADTAMYRAKERGRNQYQFFADEM 1240 Score = 41.2 bits (96), Expect = 0.060, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 49/215 (22%), Gaps = 45/215 (20%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 V + +R+ E L + + ++ ++ D R + I E Sbjct: 811 VVVDHTDLVEAQEQIRESQERLLSIMNHSTSAVSLKDAAGRYEFINMRFEELFGLSAEEV 870 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 D L R I + D I + Sbjct: 871 IGKTDQQLFSRDIAQLLRSRDLEVMGQLSAIQHLEEMV---------------------- 908 Query: 129 SSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAI 188 + W + + G++ + V A L + + Sbjct: 909 FPTSKVWLDSVRFPIFDSNGVVRAVCSQSTDVTMKHHAEEQLR-LA-----------AKV 956 Query: 189 FENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRF 223 F+ ++ + I +ND F Sbjct: 957 FDRAGEAITITDSSGNII-----------TVNDSF 980 >UniRef50_C5JAR6 Conserved uncharacterized protein n=1 Tax=uncultured bacterium RepID=C5JAR6_9BACT Length = 922 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 72/334 (21%), Positives = 136/334 (40%), Gaps = 29/334 (8%) Query: 10 SQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFT 69 ++ ++K + E +R L + +E + + E +Q++ + Y + Sbjct: 352 ARDISKRKQSEEKLRHLSQAVEQ----SPADVVITNAEGIIQYVNPRFSQVTGYASKEV- 406 Query: 70 VSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAAS 129 + S+ K + + T + G L Sbjct: 407 IGKKPSILKSGRTPAALYD-------------------SLWET--ISAGKEWRGELMNRK 445 Query: 130 SEKR-QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAI 188 + W ++ +G+I YI + + +E L+ Q+ D+LTGLPNR Sbjct: 446 KDGSLFWQHAIISPIRDNSGVITHYISVKEDISIRKEYEERLVRQANYDALTGLPNRILA 505 Query: 189 FENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEV 248 + L + A+ N K+ + +DLD+FK +ND GH +GDL L + RL + G+ Sbjct: 506 MDRLKQAIAQAQRYNRKVALMLLDLDDFKKVNDTLGHAAGDLLLKEAALRLVDCLREGDT 565 Query: 249 IGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPET 307 + RLGGDEF+++ + + + + E+I + +G + Y G S+GI + Sbjct: 566 VARLGGDEFVLLLPDLTDTSSAEVVAEKILAACNQPFDVGGHEAYIAG-SIGIAIFPDDE 624 Query: 308 TDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 D + AD AMY+ K+ + P +++ Sbjct: 625 RDPILLMRNADAAMYRSKREGKGVFRYFTPEMNA 658 Score = 51.2 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 19/169 (11%), Positives = 41/169 (24%), Gaps = 18/169 (10%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 + V + ++ + E+ + + L D E R+ + + Sbjct: 218 AMQSVWRDISARKQAEAASQAAKDHFLAFARSTPDALIAFDEEGRIVSWNEGAEAVYGFR 277 Query: 65 PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGT 124 + S L + W A++ G F PI G Sbjct: 278 QDEILGSPLSRLIPERYH-------AINAAWVK-RMAKDRGRHNFTGKPIEAHGLRKSGE 329 Query: 125 LCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQ 173 +W E + A + + +++ L Sbjct: 330 EFPVEYSVGRWREAGRNFFSVAA----------RDISKRKQSEEKLRHL 368 >UniRef50_C3X2S2 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=3 Tax=Oxalobacter formigenes RepID=C3X2S2_OXAFO Length = 1049 Score = 375 bits (965), Expect = e-103, Method: Composition-based stats. Identities = 71/344 (20%), Positives = 134/344 (38%), Gaps = 31/344 (9%) Query: 2 SDQIIARVSQSL---AKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARN 58 S +++ + + + + E ++ + S + +D + + A Sbjct: 469 SQRLLLELVEDIDFALEHFEKEEQLQLS----AQIFAQSSEGIMLLDPNCHIVMVNSAFT 524 Query: 59 SQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPD 118 Y E T+ + + + F++ T + Sbjct: 525 HITGYSEEE-TLGRNPKMLASGQHDRNFYA-------------------TMWEA--IETE 562 Query: 119 GSFYGTLCAASSEKRQWSERA-EQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 G + G + + + E Q ++ G + YI + + +E + ++ D Sbjct: 563 GRWQGEVWNRRKDGSLYPEWLLIQTMRDSRGTLTHYIGTFTDLTERKETEERVQWLAHFD 622 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 LTGLPNR + SLA+ + + + F+DLDNFK +ND GH GD L Q + Sbjct: 623 PLTGLPNRTLLHIRSNLAISLAQRRHEPLALMFLDLDNFKNVNDSLGHGVGDELLKQFSQ 682 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGAS 297 RL + + I RLGGDEF++V + + L ER+ +Y++ ++ S Sbjct: 683 RLVNAVREQDTISRLGGDEFVLVLPGTDTDGAAYLAERLLNIAARQYNIERHEIN-LTVS 741 Query: 298 LGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 +GI + TD D+ +AD AMY+ K+ + + + Sbjct: 742 IGIAMYPTDGTDFDTLWRSADAAMYRAKQSGRNDYCFFTTEMQA 785 Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 28/205 (13%), Positives = 61/205 (29%), Gaps = 40/205 (19%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDM--ESTYLTKVDVEARLQHI--------MF 55 ++ +Q++ ++ + L +Q+ + + ++ +D A + Sbjct: 120 LSHCNQAIVHSKTEKELFQQICYGIVHYSGRRFTMAWVGLIDENAEKVDMTVSYGIPEEL 179 Query: 56 ARNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDC------IAARNLGITTF 109 A + M I F + S AI E + D W D + I + Sbjct: 180 AEPFRTMSIVSRFDNIRENSPAGIAIREKRTV--WIQDVWKDPFLANWIELFNKMEIRSL 237 Query: 110 LSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKE------------ 157 + P++ DG G L S E + +++ +L I + Sbjct: 238 AAFPLY-QDGKTIGVLKVYSPEPESYDAQSKNLLTEMTSDINFALDNFFHEALRKQTQKE 296 Query: 158 ---------ALVEQLREANAALIAQ 173 L + +A + Sbjct: 297 LEESENNYRRLYTERMQAEEEVQRL 321 >UniRef50_C7RK65 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RK65_9PROT Length = 1327 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 81/337 (24%), Positives = 142/337 (42%), Gaps = 31/337 (9%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 + V + + + +E+ + Q V D + +T + + + A Y Sbjct: 759 LVGVMLDITERKRMEARLLQ----AATVFDSSAEGITITAPDGNIIAVNRAFTEITGYTE 814 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 + + + + + + F+ D W G + G L Sbjct: 815 DEV-IGRNPRMLQSGFQDRRFYL----DMWQA-----------------LGTQGRWRGEL 852 Query: 126 CAASSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 + + + E ++ G +A Y+ + + +LR A+ L Q++ D LTGLPN Sbjct: 853 WNRRKDGQTFLESLTISAVKDAQGKVAHYVGVFSDITELRRAHDQLDHQAHHDPLTGLPN 912 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R + + L A + + FIDLD FK IND GH GD L +V RL L + Sbjct: 913 RLLLGDRLHKALQRAHRDETGLAVFFIDLDRFKNINDTLGHQVGDRVLCEVAWRLGRLMR 972 Query: 245 NGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRG-EYHLGDVDLYYPGASLGIVE 302 + +GRLGGDEFL+V + E +S + E+I ++ + + ++ GAS+GI Sbjct: 973 ESDTVGRLGGDEFLIVIEDVGEPTAVSHIAEKILNVLQASPVTVE-HE-FFVGASIGISV 1030 Query: 303 VDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 + DA++ + AD+AMY+ K+ + T L Sbjct: 1031 FPQDGADAETLMKNADVAMYRAKERGRNTYEFFTKDL 1067 Score = 57.8 bits (139), Expect = 6e-07, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 46/163 (28%), Gaps = 24/163 (14%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 + + + +++ + + LL ++ + T + + + +Q + Y P Sbjct: 368 LFEDVTEKRQADRAMEALLREQALIFERAPTGIAFL-RDRVIQRCNPSFERIFGYAP--- 423 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + A R G + + G F G L Sbjct: 424 ---------------GQLLGQSTRVCFASEAAWREAGERAYA---VADESGKFIGELEYC 465 Query: 129 SSEKR-QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAAL 170 ++ W + +L A Y+ V R A AL Sbjct: 466 RADGTPIWCQVTGSLL-NPANPAEGYVWLFEDVTARRAAEEAL 507 >UniRef50_A5GBG4 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Geobacter RepID=A5GBG4_GEOUR Length = 709 Score = 374 bits (961), Expect = e-102, Method: Composition-based stats. Identities = 60/326 (18%), Positives = 122/326 (37%), Gaps = 29/326 (8%) Query: 20 ESLVRQLLEMLEMV---TDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSL 76 E +R+ + + + + + D ++++ Y Sbjct: 134 ERQIREQEKFIRKLSRAVEQSPVAIIITDTSGTIEYVNPRFTQLTGYTSAETIGKKP--- 190 Query: 77 CKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKR-QW 135 + +E W I G ++G W Sbjct: 191 --HILKSGETPPEEYRKLWE-----------------IISGGGEWWGEFHNRKKNGELYW 231 Query: 136 SERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTL 195 + + + I +I + + + ++A + +Y D+LTGLPNR E + Sbjct: 232 ASASISPITNGNEQITHFIAFQEDITERKQAEETIKQMAYYDTLTGLPNRHLFNELMHLA 291 Query: 196 FSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQ-QNGEVIGRLGG 254 + A N + + F+DLD FK IND GH GD L RL ++ + + R GG Sbjct: 292 LAQAHRHNRLLAVLFLDLDRFKHINDTLGHTVGDQLLQASAHRLKECCRRDRDTVARRGG 351 Query: 255 DEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSA 313 DEF+++ + ++ + + ++I + L D++L+ +GI + D ++ Sbjct: 352 DEFIILLPDIDDVQEAVRVAQKIIDAFTQVFVLPDIELFISTC-IGISIFPNDGRDTETL 410 Query: 314 LHAADIAMYQEKKHKQKTPFVAHPAL 339 + AD+AMY+ K+ + + ++ Sbjct: 411 IKNADMAMYRAKEQGRSRYHLYTSSM 436 >UniRef50_Q7P0M4 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7P0M4_CHRVO Length = 633 Score = 374 bits (960), Expect = e-102, Method: Composition-based stats. Identities = 74/334 (22%), Positives = 138/334 (41%), Gaps = 29/334 (8%) Query: 10 SQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFT 69 ++ ++ + E +R + V + + + D + R+ + A Y Sbjct: 61 ARDISGRRQTERQLR----LAAQVFESSNEAILISDPDNRILTVNRAFGHITGYGEAEVR 116 Query: 70 VSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAAS 129 S + FSD + T G + G + Sbjct: 117 GS----------KASMLFSDRHEPAF----------FQQMWQT--LQQRGQWSGEIWNRR 154 Query: 130 SEKRQWS-ERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAI 188 + VLQ G I+ ++ + + +E A + + D+LT LPNR + Sbjct: 155 KSGEHFPCWVNISVLQDGQGEISHFVALFTDISERKEQEARVQHMAEYDALTDLPNRVLV 214 Query: 189 FENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEV 248 + L A ++++ + F+DLD+FK IND GH +GD L +V RL + + Sbjct: 215 NDRLHQAIRQAELQHNQLAVLFVDLDHFKNINDTLGHCAGDELLKEVARRLAGAVRGLDT 274 Query: 249 IGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPET 307 +GR GGDEF+++ + + + + + ERI + I+ + +G+ L G S+GI + + Sbjct: 275 VGRTGGDEFVLILPSINQPGEAAQIAERILRTIQQPFQIGEHSL-VVGCSIGISLMPDDG 333 Query: 308 TDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 +D + L AD+AMY K H + T +++ Sbjct: 334 SDIQTLLMNADLAMYHAKAHGRNTFRFYTREMNT 367 >UniRef50_C5V3L4 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V3L4_9PROT Length = 900 Score = 373 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 76/339 (22%), Positives = 131/339 (38%), Gaps = 35/339 (10%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 V+ + K + ES +R E + D + A + Y + Sbjct: 321 VTTDITKRKQFESELRVSATAFETQ-----EGILITDENNVMLRTNAAFTAITGYTNKE- 374 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + + L F+S G + G + Sbjct: 375 AIGQNPRLLSSGRQNASFYS-------------------AMWKA--INTTGVWEGEIWNR 413 Query: 129 SSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + E ++ G++ Y+ + + Q + A + ++ D LT LPNRR Sbjct: 414 RKNGEIYPEHLTVTAVKDRNGMVTNYVGVLSDLTQRKAAEEKIENLAFFDPLTKLPNRRL 473 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + + L + A + FIDLDNFK +ND +GH GDL L QV +RL + ++G+ Sbjct: 474 LLDRLKQAMASATRSVTNGAVLFIDLDNFKALNDTYGHPMGDLLLQQVAKRLVSSVRDGD 533 Query: 248 VIGRLGGDEFLVVSLNNEN------ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIV 301 + R GGDEF+V+ + + ++ E+I +R Y +G + Y+ +S+G Sbjct: 534 TVSRFGGDEFVVLLEGFDENPLDAASQAETVGEQIFAALRQPYLIGTHE-YHGTSSIGAT 592 Query: 302 EVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + + D + ADIAMYQ KK + P + Sbjct: 593 LFNDKQQSIDELMKQADIAMYQAKKEGRNVLRFFDPQMQ 631 Score = 50.8 bits (121), Expect = 7e-05, Method: Composition-based stats. Identities = 18/158 (11%), Positives = 39/158 (24%), Gaps = 17/158 (10%) Query: 11 QSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTV 70 Q++ + E + E + + + + + N Y F Sbjct: 65 QTMKQNFLTEEKLHDSEERWKFALEGAGDGVWDWNPQTDEAFFSKRWNEIIGYTEHEFPA 124 Query: 71 SWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASS 130 + + D+ + D + + I DGS+ L Sbjct: 125 TGSAWVAHLHPDDKDRVLSVIQGYLTDSREIYD------VEYRIRCKDGSWKWILA---- 174 Query: 131 EKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANA 168 R V + G + I + + Q + Sbjct: 175 -------RGMLVSRDVYGKPLRMIGTHSDITQRKVDEE 205 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 15/160 (9%), Positives = 44/160 (27%), Gaps = 19/160 (11%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVS 71 + + + E LV + LE + + D+ ++ V+ + + + + E Sbjct: 196 DITQRKVDEELVLKNLEKWKKLFDILPIGVSIVNSKNGIVDFNPSLEAILGISKEGLLQG 255 Query: 72 WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 + D D + A + + + + G Sbjct: 256 DYDNWEYLRTDNTHM----DADEFPSLRAIKEQRVVKDVVIGVKKESGDII--------- 302 Query: 132 KRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 W+ + L + + + + ++ + L Sbjct: 303 ---WTSVSAAPLSYDSNSC---VTVTTDITKRKQFESELR 336 >UniRef50_A4U4T7 Two-component sensory box protein n=3 Tax=Magnetospirillum RepID=A4U4T7_9PROT Length = 828 Score = 373 bits (959), Expect = e-102, Method: Composition-based stats. Identities = 72/335 (21%), Positives = 136/335 (40%), Gaps = 29/335 (8%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 V + + + + LE +R + V + L D E R+ H+ A + + Sbjct: 251 VVEDITERKRLEDNMR----LAATVFENSGDGLFVTDAENRIIHVNPAFTRITGFTADEV 306 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 L D + F W + L DG + G + Sbjct: 307 LGRNPRLLASGRHDHDFFI-----QLWT-----------------VLLRDGKWQGEIWDR 344 Query: 129 SSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + ++ V++ G + ++ + + ++ L + D LT LPNR Sbjct: 345 RKDGEMFAGWQNIAVVRDTDGKVQNFVAVISDITTRKQVEERLSYAANHDPLTRLPNRTL 404 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 E LT + A ++ + + FIDLD FK +ND GH +GD+ L QV ERL++ + G+ Sbjct: 405 FQERLTRAIARASRNHNLVALLFIDLDRFKQVNDTMGHLAGDMLLQQVAERLSSCIRQGD 464 Query: 248 VIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 + RL GDEF ++ + + D + + ++ + ++ L + + S+G+ + Sbjct: 465 TVARLSGDEFTIILEDVQDPRDAAVVGHKVLRLLQEPVALTGGEAHISS-SIGVSLYPTD 523 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 D + L AD AMY+ K + + A+++ Sbjct: 524 AGDPQTLLKLADAAMYRAKHLGRNSCQFHSEAVNA 558 Score = 52.4 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 14/172 (8%), Positives = 38/172 (22%), Gaps = 20/172 (11%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 ++ R + S +++ + + D R+ A S Y Sbjct: 119 NLVRRAIFYAIERSHAASALKRSEGRFRALFANAGLGVVLADAHGRMVEANPAFLSMVGY 178 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 + D++ + DG Sbjct: 179 GEVELRGEK---------FRDITHPDDIGLNDTLRAEVLDG-----------SRDGFQLT 218 Query: 124 TLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSY 175 A + W++ V++ G + + + + + + Sbjct: 219 KRYIAKDGRIIWAKLTCTVMREADGQQPFTVTVVEDITERKRLEDNMRLAAT 270 >UniRef50_B3EBJ4 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Geobacter lovleyi SZ RepID=B3EBJ4_GEOLS Length = 693 Score = 372 bits (957), Expect = e-102, Method: Composition-based stats. Identities = 81/332 (24%), Positives = 141/332 (42%), Gaps = 24/332 (7%) Query: 10 SQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFT 69 +++ + E +R E M+ + +S + +VD+E RLQ + E Sbjct: 107 LHDISRHKRAEQALRLSEERYRMLVEHQSDLVVRVDIEGRLQFASPSFCMLFGIDEEQLV 166 Query: 70 VSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAAS 129 LC + + + + Y +C+ + Sbjct: 167 ---GRELCPIINSSGQAV-------MKEAMQRLDCHPKSC------------YHEICSQT 204 Query: 130 SEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIF 189 + +W A + + G I + + ++A ++ ++ D+LTGLPNR + Sbjct: 205 LDGLRWIGWAMKGVVDEKGHIEAIVGIGRDITDRKKAEQEILQLAHYDTLTGLPNRSLLQ 264 Query: 190 ENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVI 249 + L+ SLA N + + F+DLD FK +ND FGH GDL L +V RL + + + Sbjct: 265 DRLSQALSLANRGNVTLAVLFLDLDRFKHVNDAFGHQIGDLLLQEVSRRLKDCVRATDTV 324 Query: 250 GRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETT 308 R+GGDEF+++ N + + S+ +I + + LG +LY G S+GI + Sbjct: 325 SRIGGDEFVIILTNLIKCSQAGSIAAKIISSMSRLFQLGGHELY-SGTSIGIALYPTDGN 383 Query: 309 DADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 D D+ L AD+AMYQ K + T P + Sbjct: 384 DVDTLLKHADMAMYQAKASGRGTFKFFSPEHN 415 >UniRef50_Q3SIW6 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=2 Tax=Proteobacteria RepID=Q3SIW6_THIDA Length = 1212 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 72/335 (21%), Positives = 132/335 (39%), Gaps = 29/335 (8%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 Q + + E +R + + + + D + + A + Y ++ Sbjct: 643 GTVQDITARKKQEDALR----LYASIFEHSGEAILIADQARHIIAVNPAFTNLTGYALDD 698 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 L A + ++ G + G + Sbjct: 699 IRGEEPTILAGG--------------------QASEESYRSTWAS--LEQTGYWQGEIID 736 Query: 128 ASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 + + + A V++ G++ Y+ + + + A A + +Y D LTGL NR Sbjct: 737 RRKDGTLYPKWMAVSVVRDADGVLTHYVASFTDITERKLAEAQIKHLAYHDPLTGLSNRF 796 Query: 187 AIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNG 246 ++ L +LAR + + F+DLD FK IND GH GD L++V RL ++ Sbjct: 797 SLQTQLDQTLALARREQRTLAVVFLDLDRFKSINDSLGHALGDQLLVEVARRLRDNVRDS 856 Query: 247 EVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDP 305 +++ RLGGDEF+VV + A + + +++ + Y +G L+ AS+GI Sbjct: 857 DIVARLGGDEFVVVLTEVGDAAGAARVADKLLGALVPRYRIGGHALH-TTASIGISLYPH 915 Query: 306 ETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + DAD+ + AD AMY K + P ++ Sbjct: 916 DGDDADALMKNADTAMYHAKSQGRDNVQFFTPEMN 950 Score = 57.0 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 51/174 (29%), Gaps = 24/174 (13%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 M+D + A A+ + +R+L + + + + +D E R++ A + Sbjct: 379 MADTLAASYDNLEAEVEKRSRELRELSALQGAILEHAGALVVVLDREGRIRRFNRACEAL 438 Query: 61 KMYIP---ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLP 117 Y E V +R I ++ F+ D N Sbjct: 439 TQYSFSEVEGRQVWDFIPPEERRIVQDEAFAVLFNDPEQSRSTLTNH------------- 485 Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 A R+ E + VL G + + V A AAL Sbjct: 486 --------WVARDGGRRLIEWSNSVLHDAQGKVEFVVAVGNDVTDKMRAEAALK 531 >UniRef50_Q5P4W8 Putative uncharacterized protein n=2 Tax=Proteobacteria RepID=Q5P4W8_AZOSE Length = 1039 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 78/340 (22%), Positives = 151/340 (44%), Gaps = 29/340 (8%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 +++ + + + + + E +RQ + +V S + D + + + A + Y Sbjct: 456 KLLYSIVRDVTERKRFEERMRQAM----VVFKASSQGIMTTDAQGVITSVNPAFCTITGY 511 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 + + S+ K E FF ++ + GS+ G Sbjct: 512 LAAEV-IGRKSSMFKPERHEATFFD-------------------AMWTS--IVESGSWAG 549 Query: 124 TLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGL 182 + + S+ ++ + ++ G IA+Y+ + + + ++ A+ Q+ D LTGL Sbjct: 550 EVWSRRSDGDRYPQWVTITAVRDTDGRIAEYVTLFSDITERKQQEVAMWRQANFDPLTGL 609 Query: 183 PNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTL 242 NR + + L + AR K+ + F+DLD FK IND GH+ GD L+ V RLN+ Sbjct: 610 ANRSLLQDRLDRALAHARRHGCKVGLLFLDLDGFKWINDSLGHDVGDELLVDVARRLNSC 669 Query: 243 QQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIV 301 ++ + + RLGGDEF VV + + AD+ ++ +++ +R + L ++ S+GI Sbjct: 670 VRDEDTVARLGGDEFTVVVHDLADRADLGAIADKLVAVLREPFALRGAR-HHISGSVGIT 728 Query: 302 EVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + D + L ADIAMY+ K+ + P + + Sbjct: 729 VFPDDGDDVQTLLRNADIAMYKAKQAGKNRAQPYAPHMQA 768 Score = 69.7 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 42/162 (25%), Gaps = 23/162 (14%) Query: 11 QSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTV 70 L + QS+ + Q L L + + D ++++ Y + Sbjct: 91 AELDRAQSVAHVGEQQLRKLSTAIECSPASIVITDRSGTIEYVNPQFERSTGYTAQEVVG 150 Query: 71 SWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASS 130 R + +DE W + G Sbjct: 151 KNP-----RILKSGNRSADEYAAMWA-----------------TITHGHVWRGEFENVRK 188 Query: 131 EK-RQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 + W + ++ G+I+ ++ + + + A L Sbjct: 189 DGAHYWERASIAPIRADDGMISGFVAVKEDITLQKRAERELR 230 >UniRef50_Q21SZ9 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=3 Tax=Proteobacteria RepID=Q21SZ9_RHOFD Length = 1169 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 77/340 (22%), Positives = 133/340 (39%), Gaps = 35/340 (10%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 +S+ + + + E +R E +T D + + I A Y + Sbjct: 600 LSRDITERKQAEEALRIAATAFE-----SQEGMTVTDAQGAVLRINRAFTEITGYSADEV 654 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 V + L + + F++ + GS+ G + Sbjct: 655 -VGHNPRLLQSGRHDKAFYA-------------------AMWES--IRRTGSWQGEIWNR 692 Query: 129 SSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + E + ++ G++ Y+ + + + A + ++ D TGLPNRR Sbjct: 693 RKNGEAYPELLSITAVKENGGIVTHYVGTFMDITRRKAAEDEIRNLAFFDLQTGLPNRRL 752 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + + L + + + + IDLDNFK +ND GH+ GDL L QV +RL + G Sbjct: 753 LLDRLQQALAASARHRRQGALLLIDLDNFKTLNDTLGHDKGDLLLQQVAQRLASCVHEGG 812 Query: 248 VIGRLGGDEFLVVSLNNENA------DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIV 301 + RLGGDEF+V+ N +L +RI ++ Y L + Y AS+GI Sbjct: 813 TVARLGGDEFVVMLENLSEHLEAAATQAETLAKRILASLKQTYSLDGYE-YQSTASIGIT 871 Query: 302 EVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + + L AD+AMYQ K + T P + + Sbjct: 872 LFSEQQETTEDLLKRADLAMYQAKAVGRNTLRFFDPEMQA 911 >UniRef50_C5V1H2 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V1H2_9PROT Length = 1134 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 68/342 (19%), Positives = 130/342 (38%), Gaps = 35/342 (10%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 + +++ + E +R E + D + + A Y Sbjct: 558 LRGTGRNITGRKLKEEQLRVAAAAFETH-----EAIMITDAHGTIIKVNQAFQRITGYSQ 612 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 E + + + +E F+S W G + G + Sbjct: 613 EEV-LGENPRILSAGRNEKSFYSA----MWQQLTTL-----------------GRWRGEI 650 Query: 126 CAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 + + + ++ G +Y+ + + Q + A + ++ D+LT LPN Sbjct: 651 WDKRKSGQIYPKWMTITAVRDENGKTTEYVAIFSDITQRKLAEEEIRNLAFYDALTRLPN 710 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 RR + + L S++ + F+D+D FK +ND GH+ GDL LI+V ER+ + Sbjct: 711 RRLLLDRLHAALSVSARSRRFGAVLFLDMDRFKTLNDTMGHDYGDLLLIEVAERIKLCVR 770 Query: 245 NGEVIGRLGGDEFLVVSLNNENA------DISSLRERIQQQIRGEYHLGDVDLYYPGASL 298 + + RLGGDEF+++ + I+++ E+I+ + Y L + ++ S+ Sbjct: 771 EIDTVARLGGDEFVILVEEIDTRAEETSKHIAAIAEKIRSALSVPYRLKEKH-HHSSPSI 829 Query: 299 GIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 G+ D L AD+AMYQ K + P + Sbjct: 830 GVCLYRGIEESTDDLLKHADMAMYQAKDSGRNAVRFFDPLMQ 871 Score = 55.8 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 47/161 (29%), Gaps = 21/161 (13%) Query: 11 QSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTV 70 + + + + E+ +R + L V++ YL ++D+ ++ K Y PE Sbjct: 437 RDITERKKSEAALRYSEQRLRDVSEASGEYLWEIDINLGYTYVSNRSIEVKGYTPEQ--- 493 Query: 71 SWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASS 130 L A E F E D + F + D + G + Sbjct: 494 -----LLGHAPAE--FMPPEDIDMAARIVNLAISKNQPF---KLQHRDITPSGAI----- 538 Query: 131 EKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 W E + AG + + + L Sbjct: 539 ---LWEEVSGVPFYDDAGHLLGLRGTGRNITGRKLKEEQLR 576 Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 13/164 (7%), Positives = 40/164 (24%), Gaps = 13/164 (7%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 +++ + + + E+ ++ + + D + A + Sbjct: 181 GIARDITERKRAEAALKNSEQQARNLIDKLQVGVLLQSARAEILLCNQIALDLLGLSEAQ 240 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 + I E+ G + ++T + D + Sbjct: 241 LLGKSSFDPDWNVIHED-----------GSPFPGSEHPVPVSIATKSLVHD--VVMGVYR 287 Query: 128 ASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 S R W + + Q + + + ++ L Sbjct: 288 PSKRDRVWLLVSAAPQLNPNNEVEQVVCTFVDITERKKMEERLE 331 Score = 47.8 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 16/153 (10%), Positives = 33/153 (21%), Gaps = 27/153 (17%) Query: 27 LEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDENCF 86 L + + + + DY F Sbjct: 73 EARLRTLFNTIKDLVWLKAPDGVYLACNPVVERMLGTAEAAIVGRTDYD----------F 122 Query: 87 FSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWS--ERAEQVLQ 144 S E D + + A T ++ + E ++ + Sbjct: 123 ISREQADSFREHDRAAMNTGTVCIN------------EGWLTFKDTGYCGLFETSKTPVY 170 Query: 145 LFAGLIAQYIQKEALVEQLREANAAL---IAQS 174 G + + + + A AAL Q+ Sbjct: 171 DDTGQLIGVFGIARDITERKRAEAALKNSEQQA 203 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 48/161 (29%), Gaps = 28/161 (17%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVS 71 + + + +E + E+ + +D + V+ +AR+ + A + E Sbjct: 319 DITERKKMEERL----ELTQFASDYAPDCILWVNEQARICYANEAALHCHGFSKEELLSM 374 Query: 72 WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 + L D PD W + T DGS + Sbjct: 375 TIHDL----------DPDFPPDVWLAHWHELQHKGGITIETRHRRRDGSIF--------- 415 Query: 132 KRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIA 172 E + ++ G I + + +++ AAL Sbjct: 416 ---PIEVSANFVKF--GDKEYNIAYHRDITERKKSEAALRY 451 >UniRef50_C5D2J8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Geobacillus sp. WCH70 RepID=C5D2J8_GEOSW Length = 568 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 65/310 (20%), Positives = 133/310 (42%), Gaps = 25/310 (8%) Query: 33 VTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVP 92 + + + + D + R+ + A Y E + + + + + + F+ Sbjct: 21 IFEYSNESIIITDAQNRILFVNPAFEIVTGYSAEEV-IGKNPRILQSGMHDKQFY----K 75 Query: 93 DRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIA 151 W D G + G + + + E V++ G + Sbjct: 76 KMWNDIK-----------------QHGVWKGEIWNKRKDGELYLEWLTISVVKDQKGNMT 118 Query: 152 QYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFI 211 Y+ + + + + L + D+LT +PNR + + L ++ +++ N + F+ Sbjct: 119 NYVAMFSDITEHKRNVEQLTRLALYDTLTNVPNRYLLEKRLESIIRMSKKHNQSFALLFL 178 Query: 212 DLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN-ADIS 270 DLD FK IND GH GD+ L + +RL + + + I R GGDEF+++ N ++ + + Sbjct: 179 DLDRFKNINDTLGHRVGDMLLKETAQRLKRMLRKQDTIARFGGDEFVIILPNLKHIREAA 238 Query: 271 SLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQK 330 + E+I + ++ + ++Y S+GI + TD ++ + AD AMYQ KK+ + Sbjct: 239 YMAEKIVESLKRPFCFNHQEIYIST-SIGISVYPYDGTDKETLIRMADRAMYQAKKNGRN 297 Query: 331 TPFVAHPALH 340 + H +H Sbjct: 298 QYALYHAGMH 307 >UniRef50_C8SP12 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SP12_9RHIZ Length = 894 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 89/350 (25%), Positives = 150/350 (42%), Gaps = 18/350 (5%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 M A + + +A L+ ++ +L+ ++E + +D E R A + Sbjct: 294 MLRTGQAEILEMIATGAPLDDVLDRLMRLMESQLTGILGSVLLLDKEGRHLRHGAAPSLA 353 Query: 61 KMYIP--ENFTVSWDYSLCKRAI--DENCFFSDEVPDR-WGDCI-AARNLGITTFLSTPI 114 + YI + + C A+ E +D + D W D A G + STPI Sbjct: 354 EGYINAIDGVAIGPKVGSCGTAVFRREPVVVADIMRDPLWDDYRDLAERYGYRSCWSTPI 413 Query: 115 HLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 G+ G S R+ +E +++ + I + ++A + + Sbjct: 414 VSHQGAVLGVFAMYSMTVREPAEAETRLINFTTRIAGIAI-------ERKKAEDQIHFMA 466 Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 D LTGLPNR + + L+ A+ + + + FIDLDNFKLIND GHN+GD L Sbjct: 467 NHDVLTGLPNRALLQDRLSQAILHAQRYDRWVSVVFIDLDNFKLINDTLGHNAGDRLLKT 526 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRE---RIQQQIRGEYHLGDVDL 291 V ER+ + + I RLGGDEF++V + + ++ + E +++ I LGD Sbjct: 527 VAERMVGCISSTDTIVRLGGDEFVLVLSD-QPKNVDLIAETLQKLRTAIAEPLQLGDH-C 584 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 AS+GI + +S + AD AMY+ K + P ++ Sbjct: 585 VRATASIGIATYPKDGKAPESLVANADAAMYRAKAVGRDNFQFYAPEFNT 634 Score = 48.1 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 24/218 (11%), Positives = 55/218 (25%), Gaps = 42/218 (19%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 V++ +A Q ++ + L+ + D YL D E+R A + Sbjct: 154 STHEDVTELIATRQIVDERIS-----LQTLIDWVPDYLWVKDSESRFIVANRALAADSGR 208 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 + D + + D ++ G P+ + Sbjct: 209 ETTRDMIGL--------TDFDLHAPELASKFRADELSVLQTG------QPMIDEE----- 249 Query: 124 TLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLRE-------ANAALIAQSYT 176 S +W + L+ + + + + L + Sbjct: 250 EFVVDRSGAGKWLSSTKVPLRNDRNDVFGLVGIAHDITGRKREDMLRTGQAEILEMIA-- 307 Query: 177 DSLTGLPNRRA--IFENLTTLFSLARHLNHKIMIAFID 212 TG P + + L ++ + +D Sbjct: 308 ---TGAP---LDDVLDRL-MRLMESQLTGILGSVLLLD 338 >UniRef50_C7RN47 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RN47_9PROT Length = 1542 Score = 370 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 75/331 (22%), Positives = 134/331 (40%), Gaps = 28/331 (8%) Query: 10 SQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFT 69 + + + E +R + +V D S + D E R+ I + ++ Y + Sbjct: 970 ATDITARKRAEEQLR----LAALVFDRASEGVMVTDTEQRILTINDSFSTLTGYTRQEVV 1025 Query: 70 VSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAAS 129 R + + + + W G + G + Sbjct: 1026 GKTP-----RLLRSDRMPREFYAEMWDKVTRL-----------------GVWQGEIWNRR 1063 Query: 130 SEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAI 188 + E + ++ G + Y+ + + ++RE+ + + D LTGLPNR Sbjct: 1064 KNGEPYLEWLSINTVKDKNGKVVNYVGMFSDITKVRESQQRIEYLATHDELTGLPNRALF 1123 Query: 189 FENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEV 248 + L + A + + FIDLDNFK++ND GH +GD L Q RL + + Sbjct: 1124 NDRLNLALAHAERSRESVGVVFIDLDNFKVVNDTLGHETGDKLLKQAAMRLLECVRAEDT 1183 Query: 249 IGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETT 308 + RLGGDEF+V+ +N + + ER+ + YH G+ + + AS+G+ + + Sbjct: 1184 VARLGGDEFVVLLVNADRQQATLTAERLLTGLSTSYHFGEHECFI-SASIGLSMFPEDAS 1242 Query: 309 DADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 DA+S + AD AMY+ K H + L Sbjct: 1243 DANSLMRNADSAMYRAKDHGKNGFRFFSADL 1273 Score = 44.7 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 46/207 (22%), Gaps = 51/207 (24%) Query: 20 ESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKR 79 E R+ L+ V + + + D R Q + D Sbjct: 855 ERSARETQVRLQAVMNNSVSLMAVKDAPGRYQFANPKFEQTFGFATGEVIGKTD------ 908 Query: 80 AIDENCFFSDEVPDRWGDCIA---ARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWS 136 F + V D + + GI S P+ + F Sbjct: 909 ----LQLFPEAVSDLFRESELEAIRLRKGIEREESLPLAAGERHFL-------------- 950 Query: 137 ERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLF 196 L G I + + + A L + +F+ + Sbjct: 951 -VVRFPLFDDDGAITGLCFQATDITARKRAEEQLR-LA-----------ALVFDRASEGV 997 Query: 197 SLARHLNHKIMIAFIDLDNFKLINDRF 223 + + IND F Sbjct: 998 MVTDTEQRIL-----------TINDSF 1013 >UniRef50_C6WUG6 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WUG6_METML Length = 836 Score = 370 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 71/340 (20%), Positives = 134/340 (39%), Gaps = 35/340 (10%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 +S + ++ E+ +R E S + D + + A + Y E+ Sbjct: 268 GISTDITALKNAETSLRIAATAFE-----SSDGILITDAGCSILQVNSAFTTITGYSAED 322 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 V + + + F+ G++ G + Sbjct: 323 V-VGKNPRILSSGRHDQLFY-------------------QALWDR--VNTTGTWCGEIWN 360 Query: 128 ASSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 + E ++ G + Y+ + + + ++ + ++ D LT LPNR Sbjct: 361 RRKNGDIYPERITISEVKDKDGKVTNYVSVFTDISESKASSEQIEHLAFYDPLTNLPNRL 420 Query: 187 AIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNG 246 + + + FS + K + F+DLD+FK++ND GH++GDL L ERL+ + G Sbjct: 421 LLLDRVRQAFSSSSRTGKKGALLFVDLDHFKVLNDTLGHSTGDLLLKLQAERLSHCVRAG 480 Query: 247 EVIGRLGGDEFLVVSLNNEN--ADISSLRE----RIQQQIRGEYHLGDVDLYYPGASLGI 300 + + R GGDEF+VV + + + +++ E +I + G Y +S+GI Sbjct: 481 DTVARFGGDEFVVVLEDLDRNATEAAAIAEQIGNKILSTLHEPCQFGTHQ-YQSTSSIGI 539 Query: 301 VEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + + + L ADI+MYQ KK + T PA+ Sbjct: 540 TLFSGDEHEIEDLLKQADISMYQAKKAGRNTLRFFDPAMQ 579 >UniRef50_C6WTL1 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WTL1_METML Length = 976 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 72/336 (21%), Positives = 126/336 (37%), Gaps = 35/336 (10%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVS 71 + + + +E +R E + + + + A Y E T Sbjct: 400 DITERKKIEQQLRIAATAFE-----SQEGIVVTNENFNILRVNQAFIDITGYEAEEAT-G 453 Query: 72 WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 ++ K F+ + GS+ G + Sbjct: 454 KKPNILKSGRQSGEFYRNIYTS---------------------LRETGSWSGEIINRRKN 492 Query: 132 KRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFE 190 + E ++ G Y+ + + A+ + ++ D LT LPNRR + Sbjct: 493 GEIYPEHLTITAVKDADGQTTNYVGMFTDISVAKAASERIENLAFFDPLTNLPNRRLFSD 552 Query: 191 NLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIG 250 LT + + + F+DLD+FK +ND GH+ GD+ L QV RL+ + G+ + Sbjct: 553 RLTQALVNSTRSGNYGALVFLDLDHFKSLNDTLGHDYGDMLLKQVALRLSNCVREGDSVA 612 Query: 251 RLGGDEFLVVSLNNENADI------SSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVD 304 RLGGDEF+++ N D+ ++ ++I + Y L + Y S+GI + Sbjct: 613 RLGGDEFVLLVENLSANDVEAAHQIEAIGDKILMSLNQPYQLQSHE-YLSTPSIGISLFN 671 Query: 305 PETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 ++ L ADIAMYQ KK + T P + Sbjct: 672 GHQESSEDLLKHADIAMYQAKKAGRNTLRFFDPLMQ 707 Score = 47.4 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 14/170 (8%), Positives = 44/170 (25%), Gaps = 17/170 (10%) Query: 2 SDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQK 61 ++Q+ V++ + ++ + + + ++ Sbjct: 260 NEQLEEEVARRTQALKENIEELKNSEFRWKFAIEGAGDGVWDWNIATDEAQYSKRWKEML 319 Query: 62 MYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSF 121 Y EN + + R ++ + + + + A + + D + Sbjct: 320 GYD-ENELLPTNQEWADRVHHDDVAYVKQTMQDYLEGKTALY-----VVEYRLKCKDNRY 373 Query: 122 YGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 L R V + G + I + + ++ L Sbjct: 374 KWIL-----------GRGMIVSRDDQGNPLRMIGTHTDITERKKIEQQLR 412 >UniRef50_A0LD38 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LD38_MAGSM Length = 834 Score = 370 bits (950), Expect = e-101, Method: Composition-based stats. Identities = 72/353 (20%), Positives = 137/353 (38%), Gaps = 36/353 (10%) Query: 2 SDQIIARVSQSLAKEQSLESLVRQL----------LEMLEMVTDMESTYLTKVDVEARLQ 51 D++ A V+Q A ++ ++Q L + V + S + D R+ Sbjct: 223 HDKLEATVAQRTAALKTSNEQLKQQMIEREQAQHRLRLTAGVFENTSEAIIITDAANRVM 282 Query: 52 HIMFARNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLS 111 + A Y + + D K + F+++ W Sbjct: 283 EVNPAFVRITGYPADEV-IGRDPGFMKSHRHTHEFYAEMWKKIW---------------- 325 Query: 112 TPIHLPDGSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAAL 170 G + G + + + + G + I + + +L+ L Sbjct: 326 -----QTGQWQGEIWDRRHNGEIYPKWLTINAVYDERGHLVNCIGIFSDISRLKATEERL 380 Query: 171 IAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDL 230 ++ D LT LPNR L + A +K+ + FIDLD+FK IND GHN+GD Sbjct: 381 EQLAFFDCLTKLPNRAHFQSRLDHALTAANRRQNKVGLIFIDLDHFKHINDSMGHNAGDQ 440 Query: 231 FLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD--ISSLRERIQQQIRGEYHLGD 288 LI+ +R+ + + + + R+GGDEF ++ + + ++++ I + L D Sbjct: 441 LLIEAAKRIQSCVREEDTVARMGGDEFTIILADLTDTAKVMTNVALTILESFTHPIVLED 500 Query: 289 VDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 L+ G SLG+ ++ +A + AD AMY+ K+ + +++ Sbjct: 501 KKLFI-GCSLGMAIYPDDSGNAALLIKHADTAMYRAKESGRNRYSFYTAEMNA 552 >UniRef50_Q1JX80 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JX80_DESAC Length = 678 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 71/338 (21%), Positives = 133/338 (39%), Gaps = 24/338 (7%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 I + + + E ++ E + + + + + A + Y Sbjct: 104 IQGFFRDITARKKTEKALQTSEERFRTIYESSVAGIAMLAPDGHFLQANSAFCNFLGYNE 163 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLST-PIHLPDGSFYGT 124 E + + D++ D AR + + + DGS + Sbjct: 164 EELL---------QMKITDVTHPDDIEDTLSRRNIARANRLHSIVCEKRYIRKDGSVF-- 212 Query: 125 LCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 W++ + G + + + +EA + +Y DSLTGL N Sbjct: 213 ----------WAQLSSTWFFDANGNPLYTVPVIQDITRRKEAEERIRELAYYDSLTGLAN 262 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R + L + + +R + + F+DLD FK +ND GH GD L Q ERLN + Sbjct: 263 RTLFNDRLDQVMARSRRRQSRFALMFLDLDRFKGVNDTLGHAVGDAMLRQAAERLNECLR 322 Query: 245 NGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 + + RLGGDEF+++ + E+A++ + ++I + + + LG ++Y S+GI Sbjct: 323 ENDTVARLGGDEFVIILSDYKEDANLPRVADKILKALSSPFDLGVREVY-SSTSVGIAIY 381 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + +A L AD+AMY K+ T +++ Sbjct: 382 PDDGDEATDLLRHADMAMYAAKESGGDTFRFYSSEMNA 419 >UniRef50_A4J477 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=2 Tax=Firmicutes RepID=A4J477_DESRM Length = 947 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 76/346 (21%), Positives = 147/346 (42%), Gaps = 13/346 (3%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 + + +L +L+ L++ ++ ++ + ++ +D ++ + Sbjct: 341 LHETTLALMNRLNLDELLKAIVTRSAELSGTDHGFIFLID-NNNPSELVLRFGTGTYKQM 399 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWG-DCIAARNLGITTFLSTPIHLPDGSFYGT 124 + + + W ++ I ++ P+ +G G Sbjct: 400 VGIRLKPGEGMVGTVWQTGEPLIVKDYSSWPGKSSIFSHIKIHGGIALPLKS-EGKINGI 458 Query: 125 LCAASSEKRQWSERA-EQVLQLFAGLIA-------QYIQKEALVEQLREANAALIAQSYT 176 L EK Q E +L FA L + Y + + + + L +Y Sbjct: 459 LGIIYIEKNQNLESNNLSLLTGFAQLASIALDNANLYQAAQQELAERKRIEEILRYLAYH 518 Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 DSLT LPNR + L+ + A +K+ + F+DLD+FK +ND GH+ GD L + Sbjct: 519 DSLTELPNRTLFNDRLSMALNQAHRNKNKLAVMFLDLDHFKKVNDTLGHDIGDQLLKGIA 578 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYPG 295 +R + L + G+ I R+GGDEF ++ N A+ S + ++I + + +G+ + ++ Sbjct: 579 QRFSKLLRKGDTIARIGGDEFTILLHNITRAENASIVADKIIDTLANPWIIGNHE-FHIT 637 Query: 296 ASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 S+GI + TDA+S L AD AMYQ K+ + P +++ Sbjct: 638 TSIGIALYPDDGTDAESLLKNADAAMYQAKEMGRNNYQFYTPTMNA 683 >UniRef50_Q2W4Z4 Predicted signal transduction protein containing a membrane domain n=4 Tax=Magnetospirillum RepID=Q2W4Z4_MAGSA Length = 831 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 74/329 (22%), Positives = 117/329 (35%), Gaps = 26/329 (7%) Query: 14 AKEQSLESLVRQLLEMLE-MVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSW 72 + + E + L V D + R+ I Y Sbjct: 258 SAGRLTEKALADEETRLAAHVFSNALEATLITDPKGRILRINPMFTELTGYGEAEVVGGN 317 Query: 73 DYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEK 132 R I N +D + W DG + G + + Sbjct: 318 P-----RIIRSNHHDADFYAEIWQA-----------------IFRDGRWQGEIWNRRKDG 355 Query: 133 RQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFEN 191 + + + + AG I +I + + EA ++ ++ D LT LPNR + Sbjct: 356 QVFVAWESIVAVYDEAGAIRYFIGSFRDITEQVEAQRHILRLAHYDVLTDLPNRVLFQDR 415 Query: 192 LTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGR 251 L A + + + F+DLD FK +ND GH +GD L +V RL + + I R Sbjct: 416 LERAVVHALRHDRQAALLFLDLDGFKKVNDTMGHRAGDDLLKEVAVRLRGCVRMTDTIAR 475 Query: 252 LGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDA 310 LGGDEF V+ A D S + ++I + + D++ G S+GI + T Sbjct: 476 LGGDEFTVILDEISAANDASMVADKILASLHAPIFIDGRDVFI-GTSIGISLFPIDGTSG 534 Query: 311 DSALHAADIAMYQEKKHKQKTPFVAHPAL 339 D L AD AMYQ K + + Sbjct: 535 DELLKHADTAMYQAKAAGKGRFNFYSAEM 563 >UniRef50_C6XCZ6 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XCZ6_METSD Length = 869 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 66/338 (19%), Positives = 131/338 (38%), Gaps = 29/338 (8%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 + Q ++ + E +R + +V + S + VD E+++ + A Y Sbjct: 301 LQGSFQDISDRKVAEDKMR----LATLVFENSSEAIMVVDAESQILSVNPAFTEMTGYTA 356 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 + L D + + W + +G + G + Sbjct: 357 QEVVGKTPKILASGKQDRKFY-----EEMWH-----------------LLDSNGKWQGEV 394 Query: 126 CAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 ++E + G + + + + + + ++ + Q+ D LTGLPN Sbjct: 395 WNRRKNGESYAEWLTIDTIYNEHGEVIRRVALFSDITKNKQNQEVIWRQANFDQLTGLPN 454 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 RR + + L A + + + F+DLD FK +ND +GH GD L + RL + Sbjct: 455 RRMLHDRLNQEILKADRNHQMLAVLFLDLDRFKEVNDTYGHLMGDQLLQESAHRLLHSVR 514 Query: 245 NGEVIGRLGGDEFLVVSLNNENADISS-LRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 + + RLGGDEF+V+ ++ D+ + + I ++ + L + DL + S+GI Sbjct: 515 ECDTVARLGGDEFVVILSGLQDKDVVQDIAQSILKKFDTPFQLDN-DLTHVSVSIGITIY 573 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + + AD AMY K + + ++ + Sbjct: 574 PEDGNAGEVLFKNADQAMYVAKNNGRNRYSYFTASMQA 611 >UniRef50_Q2W154 Putative uncharacterized protein n=2 Tax=Magnetospirillum RepID=Q2W154_MAGSA Length = 802 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 71/334 (21%), Positives = 137/334 (41%), Gaps = 29/334 (8%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 S+ + + +R+L LE + D ++++ A Y + Sbjct: 233 FSRDVTQSHQRRQQLRKLETALEQ----APVSVMITDSHGAIEYVNRAFVLVSGYSEDEV 288 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 R + + D W L+ ++ G LC Sbjct: 289 LGRNP-----RLLKSGETVASLYRDMWH------------CLA-----SGATWQGELCNR 326 Query: 129 SSEKR-QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + + W ++ G++ ++ + + Q +E L+ Q+ D+LTGLPNR Sbjct: 327 AKDGSLFWEYATISPIRDDDGVVTHFMAVKENITQRKETEQQLVHQATHDTLTGLPNRLL 386 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + + + +A+ +I + F+DLD FK++ND GH +GD L V +RL + + Sbjct: 387 LEDRVHHAIEVAKREGRRIGLMFLDLDRFKIVNDSLGHVAGDELLKVVSDRLRHTLRRSD 446 Query: 248 VIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 + RLGGDEF+VV + +++ + E+I + L ++ GAS+GI + Sbjct: 447 TVARLGGDEFVVVLTHFQSTTELAEVAEKISAALDEPVELSGHKVHV-GASIGIAIYPDD 505 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + ++ + AD AMY+ K+ + T ++ Sbjct: 506 GDNFNALMKDADTAMYRAKQKGRNTFCFYDSNMN 539 Score = 43.1 bits (101), Expect = 0.014, Method: Composition-based stats. Identities = 12/162 (7%), Positives = 42/162 (25%), Gaps = 26/162 (16%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVS 71 ++K + E + ++ + D + + V+ E + + A ++ ++ Sbjct: 115 DVSKRKQAEQAILDGKTLIRAMLDSSTDGIVLVNAEGTILAVNAAASAIFEKNSDDLPGK 174 Query: 72 WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 W + + + + + T+ + + Sbjct: 175 A---------------------IWDHLPDSVVAPMRRGIDRVLDRRE-----TVESHHAI 208 Query: 132 KRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQ 173 + + ++ G + V Q + L Sbjct: 209 GAKLFDVHMHLVADSVGQRDRVAIFSRDVTQSHQRRQQLRKL 250 >UniRef50_Q3JAR2 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=2 Tax=Nitrosococcus oceani RepID=Q3JAR2_NITOC Length = 944 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 72/329 (21%), Positives = 127/329 (38%), Gaps = 29/329 (8%) Query: 15 KEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDY 74 + ++ ES +R + V + + D +A + + A Sbjct: 380 RRKNAESRLR----LTAKVFESTVEGVIITDTKAYVVDVNEAFTHITGIARSEIMGRHLS 435 Query: 75 SLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQ 134 +L + I + G + G L + Sbjct: 436 TL-------------QTKQEKPISFQRVRHAIKST---------GQWQGELWSQRKNGEI 473 Query: 135 WSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLT 193 + ++ I ++ + + ++ L ++ D+LTGLPNR + L Sbjct: 474 YPLWVTANAVRNSKEEITHFVAIFSDITLRKQTEQRLYYLAHHDALTGLPNRSLFLDRLE 533 Query: 194 TLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLG 253 A+ +H+I + FIDLD FK IND GH GD+ L QV ER+ + + I RLG Sbjct: 534 HAIHHAQRHHHRIAVLFIDLDRFKFINDTLGHPIGDILLKQVAERMRLNIRAEDTIARLG 593 Query: 254 GDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADS 312 GDEF V+ N + + IS + ++I +++ +L+ AS+G+ + +A Sbjct: 594 GDEFTVIIENFTDTSAISLITQKIISACEKPFNIKGNELFV-SASIGVSLYPEDGHEASM 652 Query: 313 ALHAADIAMYQEKKHKQKTPFVAHPALHS 341 L AD AMYQ KK + +++ Sbjct: 653 LLQRADAAMYQAKKRGKSCCQFFTTEINT 681 >UniRef50_B4B341 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4B341_9CHRO Length = 1342 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 66/331 (19%), Positives = 120/331 (36%), Gaps = 29/331 (8%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVS 71 + Q + ++ L + E + D E ++++ Y Sbjct: 768 DVTDIQQAQEQLKILYQATEQ----SPVSVVITDAEGTIEYVNPKFEKITGYQRAEVIGQ 823 Query: 72 WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 R + ++E W ++G Sbjct: 824 NP-----RILKSGETTTEEYKQIWK-----------------TITSGQEWHGEFHNKKKN 861 Query: 132 KR-QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFE 190 W + ++ G+I ++ + + + + L Q+ D+LTGLPNR + Sbjct: 862 GELFWEAASISPIKNAEGIITHFVAVKEDITERKAQQTTLTYQANYDALTGLPNRFLAID 921 Query: 191 NLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIG 250 L A ++ + FIDLD+FK +ND GH GDL L +V +RL + + + Sbjct: 922 RLKQAILQADRQKKRVAVMFIDLDHFKDVNDTLGHEYGDLLLQKVSQRLKQCLRKSDTVA 981 Query: 251 RLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTD 309 RLGGDEFL++ N E + +I + ++L + + AS+GI + D Sbjct: 982 RLGGDEFLIILPNLRETHHCKLIASKILSSLEKPFNLLTEEAFI-SASIGITLYPDDGND 1040 Query: 310 ADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + AD AMY K+ + ++ Sbjct: 1041 VSVLMRNADAAMYLGKRGGRNDFKFYTMGMN 1071 Score = 60.9 bits (147), Expect = 6e-08, Method: Composition-based stats. Identities = 18/172 (10%), Positives = 46/172 (26%), Gaps = 26/172 (15%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVS 71 ++++Q E +++LL + +T + + D + + + Sbjct: 416 DVSQQQGTEESLQKLLRLYTNLTQAAPVGIFRADESGKWLYANEKALLISGISLDKAIGM 475 Query: 72 WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 N +D+ + + I + + DG+ Sbjct: 476 G---------WANYVHNDDRARVFNEWIKSIQTQTSWRTEYRYRHSDGN----------- 515 Query: 132 KRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANA---AL--IAQSYTDS 178 W G I Y+ + + + A + Q+ D+ Sbjct: 516 -NTWVLVQAIPEMDEQGKIVGYLGTLTDITERKNAEEATNKINAQMQAIFDA 566 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 17/169 (10%), Positives = 47/169 (27%), Gaps = 43/169 (25%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 V + ++ + E +R+ E L+ + L +D++ ++ + A E+ Sbjct: 659 VVRDISDRKQTELALRESEERLKTIISTNPNGLLILDLQGKVLFVNPAAEILFGRKQEDL 718 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 L PI + + Y + Sbjct: 719 MGQI-------------------------------------LGIPIIVNN---YSEIEIL 738 Query: 129 SSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI--AQSY 175 + +++++ ++ V +++A L Q+ Sbjct: 739 QPSGKLII-VRMRLVKIIWQEKNAFLASLVDVTDIQQAQEQLKILYQAT 786 Score = 42.0 bits (98), Expect = 0.031, Method: Composition-based stats. Identities = 14/164 (8%), Positives = 45/164 (27%), Gaps = 27/164 (16%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 + + ++ E ++ ++ + D L ++D + + + P+ Sbjct: 538 GTLTDITERKNAEEATNKINAQMQAIFDAFPDILFRIDQQGTILDYKTQDHHSLYCSPQE 597 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 F + ++ + + G+ ++ I Sbjct: 598 FIGRTVQEVLPESVGNLLYEGVQKALVSGEIVSIEYFLIIAL------------------ 639 Query: 128 ASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 +KR + R ++ + I + ++ AL Sbjct: 640 ---QKRFFDARIVRL------SPVETIAVVRDISDRKQTELALR 674 >UniRef50_Q0A572 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=3 Tax=Gammaproteobacteria RepID=Q0A572_ALHEH Length = 840 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 75/338 (22%), Positives = 131/338 (38%), Gaps = 25/338 (7%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 + + ++L + + R+ L++ E V D + D AR++ + A Y Sbjct: 258 LKDLRRALEQRDKALAQSRKHLQLAERVIDSSLEGIVITDAHARIEFVNPAFTHLTGYSL 317 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 E + + W G + G + Sbjct: 318 EEVAGRTP-----AVLSSGRHPPSFYREMWQALQ-----------------EQGYWRGEI 355 Query: 126 CAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 + E + G Y + +RE + +Y D LT LPN Sbjct: 356 WNRRKSGALYLELLTITAITNDDGDTTHYAGLFTDITHIRENERQIRQLAYYDPLTRLPN 415 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 RR + + L+ A ++ + FIDLD+FK +ND GH GD L++V ERL + Sbjct: 416 RRLLDDRLSLAIKHAHRHRQRLAVMFIDLDHFKQVNDTLGHAVGDELLLRVSERLREHLR 475 Query: 245 NGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 + + RLGGDEFL + + + + + +R+ + I Y +GD D + G S+G+ Sbjct: 476 EDDTLARLGGDEFLALLPDLQEVDEAIRVTQRLIEAISQPYTIGDHD-FRVGCSIGLSLY 534 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + D+ + AD AMY+ K + T + P + + Sbjct: 535 PDDGESPDALIRNADGAMYRSKTEGRNTYRLYAPEMDT 572 >UniRef50_C6P0P9 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P0P9_9PROT Length = 1080 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 71/336 (21%), Positives = 128/336 (38%), Gaps = 35/336 (10%) Query: 13 LAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSW 72 + + + E +R E + D + + + A Y PE Sbjct: 758 ITQRKQAEQALRIAAAAFETH-----EAILITDAQVNIIRVNKAFTDITGYTPEEAM-GK 811 Query: 73 DYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEK 132 + + +++ L G++ G + Sbjct: 812 NPRFMSSGRHDREYYA-------------------AMWQQ--ILETGTWAGEIWDRRKSG 850 Query: 133 RQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFEN 191 + + V++ G QY+ + + + ++A + ++ D LT LPNRR E Sbjct: 851 EIYPKWMNITVVKNDRGETTQYVSIFSDITERKKAEDEIRNLAFYDPLTLLPNRRLFLER 910 Query: 192 LTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGR 251 T + + I F+DLD FKL+ND+FGH+ GDL L++V R+ + + + R Sbjct: 911 FHTALAASARYGDFGSILFLDLDRFKLLNDKFGHDYGDLLLVEVASRIKACVREIDTVAR 970 Query: 252 LGGDEFLVVSLNN--ENADISS----LRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDP 305 GGDEF+V+ + + + + + E+I+ + Y L +++ Y S+GI Sbjct: 971 FGGDEFVVLLESISSDREEAAHKSGVVAEKIRDALSRPYRLKELE-YRCSPSIGISLYHG 1029 Query: 306 ETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 D L AD AMYQ K + P + S Sbjct: 1030 NDDSMDVLLKYADAAMYQAKDAGRNNVRFYDPEMQS 1065 >UniRef50_C6P3H6 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P3H6_9PROT Length = 837 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 73/339 (21%), Positives = 138/339 (40%), Gaps = 35/339 (10%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 + Q + + E+ +R E + D A + + A + Y PE+ Sbjct: 264 LKQQIEDRKQAENQLRIAATAFETH-----EAIMITDAHANIIRVNQAFQNITGYSPEDV 318 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 R + S+ W L GS+ G + Sbjct: 319 IGKNP-----RVLSSGRQGSEFYAAMWKR-----------------LLGSGSWTGEIWDK 356 Query: 129 SSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + + ++ G+ +Y+ + + + A + ++ DSLT LPNRR Sbjct: 357 RKNGEVYPKWLTITAVKDNEGVTTEYVAIFSDITLRKHAEEEIYTLAFYDSLTKLPNRRH 416 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + + + S++ NH + F+D+D FK++ND GH+ GDLFL++V R+ ++ + Sbjct: 417 LLDRINQARSISARSNHYGALLFLDMDRFKILNDTLGHDYGDLFLVEVSRRMRNCVRDMD 476 Query: 248 VIGRLGGDEFLVVSLNNENAD------ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIV 301 + R+GGDEF+V+ + ++ + E+I+ + Y L D + ++ S+G+ Sbjct: 477 TVARIGGDEFVVLIEEIGTDNEEVSTKVALIAEKIRAALTEPYLLKDKE-HHSSPSIGVC 535 Query: 302 EVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 D+ L AD+AMYQ K+ + PA+ Sbjct: 536 LYLGNEESVDTLLRHADLAMYQAKESGRNGVRFFDPAMQ 574 >UniRef50_C4K931 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Thauera sp. MZ1T RepID=C4K931_THASP Length = 855 Score = 366 bits (941), Expect = e-100, Method: Composition-based stats. Identities = 81/343 (23%), Positives = 146/343 (42%), Gaps = 33/343 (9%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 + D + AR A ++ L + E V + + D AR+ + A Sbjct: 285 LHDALRARDLALSASQRDL--------YLAEKVIESSLEGVMVTDAHARILSVNPAFTRM 336 Query: 61 KMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGS 120 Y PE V + S+ F++ L DG Sbjct: 337 TGYAPEEV-VGLNPSVLNSGRQSPAFYARMWDG---------------------LLGDGQ 374 Query: 121 FYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSL 179 + G + + + ++ G++ Y + +L+E A + +Y D L Sbjct: 375 WQGEVWNRRKTGEVYPQLLHITAIRDREGVLTHYAALFTDISRLKETEARIRDLAYYDPL 434 Query: 180 TGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERL 239 TGLPNRR + + L + A L ++ + F+DLD FK IND GH GD L+++ RL Sbjct: 435 TGLPNRRLLDDRLQVELAHAARLRCRLAVMFVDLDRFKRINDSLGHAVGDKLLVEIAARL 494 Query: 240 NTLQQNGEVIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASL 298 ++ + + R+GGDEFLVV N + +++ R+ ++R ++ +L S+ Sbjct: 495 RASLRDDDTVARMGGDEFLVVLNNLSGPDEAATMARRMVAELRRPVNVEGREL-VVTTSV 553 Query: 299 GIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 G+ ++ DAD+ + AD+AMY+ K + + + PA+++ Sbjct: 554 GVAVYPDDSRDADTLVKHADVAMYRAKDEGRNSFQLFEPAMNA 596 >UniRef50_C1DBY5 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor n=3 Tax=Neisseriaceae RepID=C1DBY5_LARHH Length = 839 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 67/338 (19%), Positives = 127/338 (37%), Gaps = 25/338 (7%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 + + +L + +L +Q L + + V + + D E ++ + A + Sbjct: 260 VHELQYALKERDEALNLSQQNLRLADKVFEATLEGIIITDAEGIIETVNPAFTRITGWRR 319 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 E R + + + W G + G + Sbjct: 320 EEVVGKNP-----RILSSSQQPPEFYRHLWQSLR-----------------EHGFWQGEV 357 Query: 126 CAASSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 + + ++E ++ G Y + + Q + L + D LT LPN Sbjct: 358 INRRKDGKFYTEHLTITGIRGPDGTFTHYAGIFSDITQRKLNEERLHYLANHDPLTDLPN 417 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R + E L + A ++ + F+DLD FK IND GH GD L V RL + Sbjct: 418 RTLLMERLGAALTRAHRQGKRVALMFLDLDRFKFINDTLGHAVGDKLLQTVASRLTGSLR 477 Query: 245 NGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 + + RLGGDEF +V + + ++ +++ +++G L D+Y AS+GI Sbjct: 478 ASDTVARLGGDEFNIVLEDIRDLRGVAQTAQKLIDRVQGMVTLDGHDVYV-TASVGIAIY 536 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + + + AD AMY+ K+ + +++ Sbjct: 537 PDDGSTPEVLRMNADTAMYRAKERGKNNFQFFTADMNA 574 >UniRef50_Q47FU0 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Dechloromonas aromatica RCB RepID=Q47FU0_DECAR Length = 1006 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 74/329 (22%), Positives = 132/329 (40%), Gaps = 25/329 (7%) Query: 14 AKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWD 73 ++E + + + +++L + DV+ ++ + A Y E V D Sbjct: 440 SQEVTAQQEMLAQMQLLASAVQYSGEAILITDVKNKILTVNPAFTRLTGYTSEE-AVGRD 498 Query: 74 YSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKR 133 S +E W G + G + + Sbjct: 499 PSFLSA----GRTMPEEYERMWNG-----------------IAERGFWQGEIWDRRKDGG 537 Query: 134 QWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENL 192 + + + V++ G+I ++ V R A L ++ D LTGL NR ++ L Sbjct: 538 IYPKWMSISVIRGEDGMIRYHVAHFTDVSSERAAEERLHHMAHHDVLTGLLNRLSLKGRL 597 Query: 193 TTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRL 252 + AR ++ + F+DLD FK+IND GH+ GD LI+V RL ++ +V+ R+ Sbjct: 598 DQALAAARRDGSRVAVLFVDLDRFKVINDTLGHHVGDELLIEVANRLRDGVRDSDVVARV 657 Query: 253 GGDEFLVVSLNNENADI-SSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDAD 311 GGDEF+++ E+ + + E++ + Y +G DLY S+GI + D D Sbjct: 658 GGDEFVIMLSGVEHTSAVAMVAEKLVFSVGQSYQIGGYDLY-STPSIGIAIYPTDGEDGD 716 Query: 312 SALHAADIAMYQEKKHKQKTPFVAHPALH 340 + AD AMY K + ++ Sbjct: 717 ILMKNADAAMYHAKMAGRNNFQFFDAKMN 745 >UniRef50_Q1H367 Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Methylobacillus flagellatus KT RepID=Q1H367_METFK Length = 1070 Score = 365 bits (939), Expect = e-100, Method: Composition-based stats. Identities = 77/340 (22%), Positives = 128/340 (37%), Gaps = 32/340 (9%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 Q + V + ++ E + + V D S + D + + + A Y Sbjct: 478 QELFGVMLDITDRKAAEESLNLS----KQVFDNTSEAILIADRDRNILEVNQAYLDMTGY 533 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 E+ V +L + V G + G Sbjct: 534 GRED-CVGTYLALLDEPAGGGQLIGNLVQ------------------------QHGKWMG 568 Query: 124 TLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGL 182 L A + + + G + Y+ + Q ++A L + D LTGL Sbjct: 569 ELLAQKRSGEYYPAWVSISTVHDNHGSLQNYVVVLTDISQRKQAEERLQFLATHDGLTGL 628 Query: 183 PNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTL 242 PNR + E + A+ + + FIDLD FK+IND GH +GD+ L +V RL Sbjct: 629 PNRTLLQERMELAVLRAQRYQQCVGVLFIDLDRFKIINDTLGHQAGDVLLQEVAGRLGEC 688 Query: 243 QQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIV 301 + + I R GGDEF+V+ + E + ++ +I + + L +LY AS+GI Sbjct: 689 LRQTDTIARQGGDEFVVLVEDFIEQQYLVNVARKIMHALAQPFILMQQELYI-SASIGIS 747 Query: 302 EVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + D S L AD+AMY+ K + T ++ Sbjct: 748 VYPDDGVDISSLLKNADMAMYRAKDDGKNTFHFYSADGNA 787 Score = 53.9 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 41/162 (25%), Gaps = 19/162 (11%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 + ++ + E + Q + + + + EA + S Y + Sbjct: 355 LIIDISSRKQAEEALLQSRAEYRKLVESVKAVVWRATPEAAFTFVSQEAESLLGYPVREW 414 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 T + + D+ P C L + DG Sbjct: 415 T-------SNTSFWVDKLHPDDRPWVVDFCARETRQLKDHVLEYRMRAADG--------- 458 Query: 129 SSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAAL 170 + W + +V+ G + + + A +L Sbjct: 459 ---RTVWLQDIVRVIPDRFGKPQELFGVMLDITDRKAAEESL 497 >UniRef50_B8GSP1 Putative diguanylate cyclase n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GSP1_THISH Length = 882 Score = 365 bits (939), Expect = 1e-99, Method: Composition-based stats. Identities = 74/328 (22%), Positives = 133/328 (40%), Gaps = 29/328 (8%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 ++ ++ + LE +R + V + + + D R+ A Y Sbjct: 579 LAMNVTARKRLEESMR----LNARVFEDSNEGIFITDAGNRIISANTAFTRITGYEAAEV 634 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + + L + + F+ + + G + G + Sbjct: 635 -IGRNPGLLSSGMHDEAFY-------------------QSLWEQVLLH--GRWEGEIWNR 672 Query: 129 SSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + R + + + V++ G I+ +I + + + +EA A + + D+LTGL NR Sbjct: 673 RKDGRVYPQNLSISVVRDGEGRISHHIAIFSDITRRKEAEAQIRHMALHDNLTGLANRTL 732 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + + LT AR + + + FIDLD+FK +ND GH +GD L +V +RL + + Sbjct: 733 LRDRLTQAIEQARRDRNSLALLFIDLDDFKPVNDTHGHEAGDRVLKEVAQRLRAAVRRVD 792 Query: 248 VIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 + R+GGDEF+++ E D + E+I + L GAS+GI Sbjct: 793 TVARMGGDEFVILLQALEQEDMAIQVAEKIIDSLSRPIQLNGQTCL-LGASVGIALHPRH 851 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFV 334 D D + AAD A+YQ K + V Sbjct: 852 GEDHDGLMRAADQALYQAKSAGKNRYQV 879 >UniRef50_A1KAZ1 Hypothetical signaling protein n=1 Tax=Azoarcus sp. BH72 RepID=A1KAZ1_AZOSB Length = 952 Score = 365 bits (938), Expect = 1e-99, Method: Composition-based stats. Identities = 71/337 (21%), Positives = 131/337 (38%), Gaps = 30/337 (8%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 +A V + +++ L+R + V + + D++ + + A Y Sbjct: 382 VAGVWIDITEQRQATELLR----LNSAVIESTHDGVVLTDLDGAIVAVNRAFTEVTGYSR 437 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 + V + + + F+ W A G + G L Sbjct: 438 DEV-VGQNPRFLQSGRHDRGFYLS----MWAALKEA-----------------GHWQGEL 475 Query: 126 CAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 + E ++ G + Y+ + +L++ L ++ D LT LPN Sbjct: 476 WNRRKNGELFPEWLTLNAVRNEVGHVTHYVGVFTDISKLKQTEDRLDYLAHHDPLTDLPN 535 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R + L A+ ++ + F+DLD FK +ND GH +GD L V RL + Sbjct: 536 RLLVLSRLEHALDGAQRRGCRVAVMFLDLDRFKTVNDSLGHAAGDELLRAVAARLRGALR 595 Query: 245 NGEVIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHL-GDVDLYYPGASLGIVE 302 + +GRLGGDEF+V+ + E AD + + + + + + + L +++ AS+GI Sbjct: 596 EEDTLGRLGGDEFMVLLEHVEAPADAAVVAKNLVEVLAAPFALSNGHEVFIR-ASIGISF 654 Query: 303 VDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 + D + + AD AMY+ K + T L Sbjct: 655 YPDDGDDFMTLVRNADAAMYRAKAQGRNTYGFYTEDL 691 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/162 (11%), Positives = 42/162 (25%), Gaps = 10/162 (6%) Query: 29 MLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDENCFFS 88 + + T + + N E + +W R + Sbjct: 259 RQAELVRERAALRTMTQRLEEVLDCSPSVNYTLTRGEEGWVGTWMSHNLTRM--TGFSVA 316 Query: 89 DEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKR-QWSERAEQVLQLFA 147 + + W + + DG + ++ +W + ++ Sbjct: 317 EALAQGWWARTVHPDDLERASRAVRAVEEDGHYVHEYRIRCADGGVRWIRDELRAVRDEG 376 Query: 148 GLIAQYIQKEALVEQLREANAALIA-----QSYTD--SLTGL 182 G + + + + R+A L +S D LT L Sbjct: 377 GRVVRVAGVWIDITEQRQATELLRLNSAVIESTHDGVVLTDL 418 >UniRef50_C6P5X9 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P5X9_9PROT Length = 927 Score = 365 bits (937), Expect = 2e-99, Method: Composition-based stats. Identities = 70/334 (20%), Positives = 130/334 (38%), Gaps = 29/334 (8%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 S L +++ E +R + MV + S + D + + + A Y Sbjct: 362 FSTDLTEQKRAEESLR----LAAMVYENSSEAILVTDADNLIIAVNPAFEQMTGYAAAEV 417 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + + + K + F+ + +G ++G + Sbjct: 418 -LGKNPRIFKSGRHDRAFY-------------------HSMWLA--LDTEGYWHGEVWDK 455 Query: 129 SSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 ++ + V++ G I +++ + + ++ + Q+ DSLT LPNR+ Sbjct: 456 RKNGEEYIKLLTINVIRDDDGAIYRHVALFTDITERKKVEELIWRQANYDSLTKLPNRQM 515 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + L A + + IDLD FK +ND GH+ GD+ LI+ R++ + + Sbjct: 516 FHDRLEQEAKKAHRAGLSMALLLIDLDRFKEVNDTLGHDKGDILLIEAARRISACVRESD 575 Query: 248 VIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 + RLGGDEF+V+ E+ A I + + I + + L D + Y AS+GI + Sbjct: 576 TVARLGGDEFIVILSELEDMASIDRVAQDILGSLAEPFKL-DAEPAYISASIGISLYPND 634 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 T+ D AD AMY K + + Sbjct: 635 ATELDVLFKHADQAMYVAKYAGRNRFNYFTKDMQ 668 Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/165 (12%), Positives = 43/165 (26%), Gaps = 26/165 (15%) Query: 11 QSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTV 70 + + K + E+++ + D + VD++ RL + A Y E Sbjct: 241 RDITKRKLTEAVMLEKESQYRAAIDTAADGFWLVDMQGRLLEVNDAYARLSGYSREELIG 300 Query: 71 SWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASS 130 L AID + + + I G Sbjct: 301 MSIPEL--DAIDNSELVRARIEE--------------------IIRNGGYLEFDTMHKRK 338 Query: 131 EKRQWS-ERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 + W + + G + + + + A +L + Sbjct: 339 DGSLWPVHISTTYSSVSGGRCFVF---STDLTEQKRAEESLRLAA 380 >UniRef50_C5V5L2 Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V5L2_9PROT Length = 560 Score = 365 bits (937), Expect = 2e-99, Method: Composition-based stats. Identities = 70/324 (21%), Positives = 125/324 (38%), Gaps = 28/324 (8%) Query: 21 SLVRQLLEMLE---MVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLC 77 +++Q EML V + + D + R+ + A Y E Sbjct: 254 DMLKQAEEMLNLSSTVFNTVDEAILVCDADNRIVMVNPAFTRVTGYQAEEVIGKNP---- 309 Query: 78 KRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSE 137 + +D W GS+ G L + E Sbjct: 310 -HLLSSGKHDADFYRQLWAQ-----------------LTCTGSWCGELWNRRKNGELYVE 351 Query: 138 R-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLF 196 + ++ G + Y+ + + + + Q+ D+LT LPNR + + L Sbjct: 352 WSTIKQVRDPHGKLTHYVAAFSDITLRKADEENIRHQAQHDALTDLPNRVLLIDRLRQAL 411 Query: 197 SLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDE 256 SLA+ + + ++DLD FK +ND GH GDL L +V R+ + + + + R+GGDE Sbjct: 412 SLAKRDKMHLALMYLDLDQFKPVNDTLGHAVGDLLLQEVAARIRSCVREADTVARMGGDE 471 Query: 257 FLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALH 315 F+V+ ++E+ D ++ E+I+ + + + L SLG+ L Sbjct: 472 FVVLLTSSEDQRDALTVAEKIRIALEQVFQISGARLQISS-SLGVAVYPEHGASEHELLE 530 Query: 316 AADIAMYQEKKHKQKTPFVAHPAL 339 ADIAMY K+ + + P + Sbjct: 531 HADIAMYYAKQSGRNQVRLYEPEM 554 Score = 53.9 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 21/170 (12%), Positives = 51/170 (30%), Gaps = 22/170 (12%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 D +I + ++++ + LE + + E + + +V+ Sbjct: 114 DDLIRSIRYAMSRAK-LEQRLIEAEERWRFALEGAGDGVWDWNVQTNEVKFSVRLKEMLG 172 Query: 63 YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFL-STPIHLPDGSF 121 Y + D + +++P D A + + + DG + Sbjct: 173 YADDEIADHLDEWM-------RRIHPEDLPKVQADVAAYFAGALPAYFNEHRLLCKDGRW 225 Query: 122 YGTLCAASSEKRQWSERAEQVLQ-LFAGLIAQYIQKEALVEQLREANAAL 170 +W +V+ AG + I ++ L++A L Sbjct: 226 ------------KWILDRGRVVSFDAAGEPLRMIGTHTDIDMLKQAEEML 263 >UniRef50_B3EBJ5 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Proteobacteria RepID=B3EBJ5_GEOLS Length = 965 Score = 364 bits (936), Expect = 2e-99, Method: Composition-based stats. Identities = 80/339 (23%), Positives = 146/339 (43%), Gaps = 27/339 (7%) Query: 6 IARVSQ---SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 + + +++ + +E+ +++ E M+ + ++ + K D+ L + + Sbjct: 378 REHLLESFVDISRRKQVENSLKESEERYRMLVENQADLVIKTDMTGNLLFVSPSFCKLFG 437 Query: 63 YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY 122 E L +A+ ++ A G+ + D S+Y Sbjct: 438 QTEE--------KLLGKALLPVIMLPEQ---------LATAAGMEQMIC-----SDTSYY 475 Query: 123 GTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGL 182 + + E ++W A + + +G I + + A + + +Y D +TGL Sbjct: 476 REYLSPTREGKRWIGWALRCIFNQSGQAEAIIGMGRDITDRKTAESTIEQLAYHDPVTGL 535 Query: 183 PNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTL 242 PNR + + L + A + + I F+DLD FK IND GH GD L VG RL Sbjct: 536 PNRTLLHDRLQLAINRAERDSQGVAILFLDLDRFKAINDSLGHAMGDQLLRLVGNRLLDC 595 Query: 243 QQNGEVIGRLGGDEFLVVSLNNENADIS-SLRERIQQQIRGEYHLGDVDLYYPGASLGIV 301 ++ + + RLGGDEF+V+ +N S+ +I +Q+ Y + D ++Y S+GI Sbjct: 596 VRSSDTVARLGGDEFVVLISALDNDHAVGSVVMKILEQLCEPYQIDDHEVYTSS-SIGIS 654 Query: 302 EVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + DA+ L AD+AMYQ K+ + T P L+ Sbjct: 655 LFPRDGRDAEELLKNADMAMYQAKEAGRNTCHFFSPELN 693 Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 68/187 (36%), Gaps = 18/187 (9%) Query: 2 SDQIIARVSQSLAKEQSLESLVRQLLEMLEMVT----------------DMESTYLTKVD 45 +D ++ L+K +E +RQL+E + T D + ++ + Sbjct: 100 NDNLLLVTINDLSKLHLVEDGLRQLVEGISEATGEKFFQFLALHLAKGLDADFAFIGEFA 159 Query: 46 VEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDENC-FFSDEVPDRWGDCIAARNL 104 R A + I NF + C++ + + +P+ + A + Sbjct: 160 DSERTIIQTVA-VAADGAIHANFRFPLAETPCEQVLTNGLRIYPKAIPELFPLDHLALEM 218 Query: 105 GITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLR 164 G+ +++ P+ G + S + + A +LQ+FA A +++ L+ Sbjct: 219 GVESYIGIPLVSSRRITLGPMAVFSRRPIRETHLAASMLQVFAVRAASELERRQAERVLK 278 Query: 165 EANAALI 171 E A L Sbjct: 279 ETEARLK 285 >UniRef50_C5V330 Diguanylate cyclase with PAS/PAC and GAF sensors n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V330_9PROT Length = 484 Score = 364 bits (936), Expect = 2e-99, Method: Composition-based stats. Identities = 79/354 (22%), Positives = 137/354 (38%), Gaps = 25/354 (7%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 M ++ + + L + L ++ +++ +E + + + +D E + A + Sbjct: 134 MFEKFRSSTLELLTGDTPLTVILEFIVQGVEQLNSAMNCSILLLDEEGKHLGHGIAPSLP 193 Query: 61 KMYIP--ENFTVSWDYSLCKRAIDENCFFSDE---VPDRWGDCI-AARNLGITTFLSTPI 114 Y + + C A E W A G+ S PI Sbjct: 194 AFYNAAIDGVAIGMGVGSCGTAAYTGERVIVEDIATHPYWAPYKTLAAKAGLGACWSEPI 253 Query: 115 HLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 GT +K SE V++ A L + I + + + + Sbjct: 254 RSSFNQVLGTFAIYHKDKNYPSEADIYVIEQSAHLASIAI-------ERKLLEEKVRQLA 306 Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 + D+LT LPNRR + E L S+++ + + FIDLDNFK IND GH GDL LI Sbjct: 307 FYDTLTNLPNRRLLKERLNQAMSVSKRTHCYCALMFIDLDNFKPINDMHGHGIGDLLLID 366 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVVSLNNE------NADISSLRERIQQQIRGEYHLGD 288 +RL + + + + R GGDEF+V+ + + + ++I+ + Y L Sbjct: 367 AAKRLKSCVREMDTVARFGGDEFVVLLSELDVDQAISTSQAQRVAQKIRAALSVPYVLPT 426 Query: 289 VDL------YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAH 336 L + AS+G+ + + D L AD AMY+ K+ + Sbjct: 427 DILPAATIEHRCTASIGVTVFLNQGINQDDILKQADAAMYEAKEAGGNSIRFHD 480 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 11/140 (7%), Positives = 36/140 (25%), Gaps = 20/140 (14%) Query: 28 EMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDENCFF 87 + L + + D+ + ++ DY + + ++ Sbjct: 14 DRLRTILQAIPDLIWLKDMNGVYLTCNHRFEQFFGALEKDIIGHTDYDFVSKELADSFRE 73 Query: 88 SDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFA 147 +D + G + + + A ++ E + L Sbjct: 74 NDRIAMMKGGP-----------------SKNEEW---VTFADDGHQELLEATKTPLLDKE 113 Query: 148 GLIAQYIQKEALVEQLREAN 167 G + + + Q +++ Sbjct: 114 GQLIGVLGISRDITQRKKSE 133 >UniRef50_C6WYT7 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WYT7_METML Length = 526 Score = 364 bits (936), Expect = 2e-99, Method: Composition-based stats. Identities = 67/332 (20%), Positives = 132/332 (39%), Gaps = 31/332 (9%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 ++ +++++ +E+ ++ +E + D +++ I A + E Sbjct: 208 GFARDISEQKRIENELKVSAIAME-----SQEGIIITDANSKILKINDAFTKITGFTSEE 262 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 V +L K + + F+ + W GS+ G + Sbjct: 263 -AVGNRMTLLKSGVHDAAFY----KEMWES-----------------ISTQGSWQGEIWN 300 Query: 128 ASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 + E ++ G++ Y+ + + + ++ D LT LPNR Sbjct: 301 KRKSGEIYPEWLTISAVKNAEGVVTNYVGTMIDITARKSIEERVHHMAHYDPLTDLPNRS 360 Query: 187 AIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQ-QN 245 + + L + AR N + + F+DLD FK++ND GH+ GD L V RL + Sbjct: 361 LLTDRLHQALAQARRENAMLAVMFLDLDKFKIVNDTLGHDIGDALLKAVAIRLTNCFKRQ 420 Query: 246 GEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVD 304 + + RLGGDEF+V+ E D++ + + + Q + +++ + + S+GI Sbjct: 421 TDTVSRLGGDEFVVLLAKIETEQDVAMVAQEVIQSLTETFYIEEHVINI-SCSIGISLHP 479 Query: 305 PETTDADSALHAADIAMYQEKKHKQKTPFVAH 336 D S L +AD AMY+ K + + Sbjct: 480 KNGNDVASLLRSADNAMYESKHAGRGCFRFYN 511 Score = 43.1 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 18/156 (11%), Positives = 38/156 (24%), Gaps = 22/156 (14%) Query: 17 QSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFAR-NSQKMYIPENFTVSWDYS 75 + ES ++++ D + D E+R + N+ PE D+ Sbjct: 90 KQSESRLQKIEYYQRAFIDSLPFMVWLKDEESRFISVNKVHANNYGEDSPEKMIGKTDFD 149 Query: 76 LCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQW 135 + + E D P+G W Sbjct: 150 YSPKELAEYYRQEDLSVLESRQPKLVDET---------FIDPEGK------------THW 188 Query: 136 SERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 E + + G + + + + + L Sbjct: 189 IETFKAPVTDNDGNLLGTVGFARDISEQKRIENELK 224 >UniRef50_A9BW89 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=7 Tax=cellular organisms RepID=A9BW89_DELAS Length = 947 Score = 364 bits (934), Expect = 3e-99, Method: Composition-based stats. Identities = 88/348 (25%), Positives = 150/348 (43%), Gaps = 17/348 (4%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 M + + R +++A++Q L ++ + +E + + + +VD ++RL + A + Sbjct: 332 MHEVLQRRALEAMARDQPLTEVLDLVCREVERIAPDIAVSVLEVDDQSRLHPL-AAPSLP 390 Query: 61 KMYIP--ENFTVSWDYSLCKRAIDENCFFSD---EVPDRWGDCI-AARNLGITTFLSTPI 114 Y + + + C A N W D LG T STPI Sbjct: 391 ASYSAALDGVPIGPNVGSCGAAAFHNRPVLVGDIATDPLWADFKHLILPLGYTACWSTPI 450 Query: 115 HLPDGSFYGTLCAASS--EKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIA 172 G GT ++ +++++ L A + + +A + Sbjct: 451 CGLQGGVAGTFAFYYRHFDRPGPDPFHQRLVEACTDLCALAL-------EREQARRRIRQ 503 Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 ++ D LT LPNR + S+A H H++ + FIDLD FK +ND GH +GD L Sbjct: 504 LAFYDGLTTLPNRSLLLAQAEQALSVASHEGHELAVVFIDLDRFKQVNDSLGHPAGDRLL 563 Query: 233 IQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLY 292 V +R+ + G++ GRL GDEF++V + A + + ER+Q + + DV L Sbjct: 564 CSVAQRIQAELRTGDIAGRLSGDEFVIVLPHCGGAQAAEVIERLQSALGEPCMIDDVSLA 623 Query: 293 YPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 AS GI + D ++ LH AD+AMYQ K + P ++ Sbjct: 624 -STASCGIAVFPADGRDMETLLHRADMAMYQAKSGGRGLYSFFSPEMN 670 Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 31/138 (22%), Gaps = 24/138 (17%) Query: 40 YLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCI 99 L + E RL + Y LC +A + + RWG Sbjct: 101 ALAEFTPEGRLMRANANYEAILGYPTSGAEGLLHSDLCTQAHADPDAYGRW-RQRWGAGE 159 Query: 100 AARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEAL 159 +G DGS W E + G ++ + Sbjct: 160 TISRVGEH-------RRRDGS------------TCWLEATYAPVLDTQGALSHVLCIATD 200 Query: 160 VEQL----REANAALIAQ 173 + R L Sbjct: 201 ITARVQADRRRQEHLRRL 218 >UniRef50_Q21V50 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21V50_RHOFD Length = 678 Score = 364 bits (934), Expect = 3e-99, Method: Composition-based stats. Identities = 66/326 (20%), Positives = 130/326 (39%), Gaps = 30/326 (9%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVS 71 + E +R + V +T ++ + + A Y + Sbjct: 372 DITARHEREEALR----LASTVILTMDEAVTVTNMRNEIISVNPAFTVITGYFASEV-IG 426 Query: 72 WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 + L F+ D W G+++G +C Sbjct: 427 RNPKLMASGTHSATFY----QDMWAKLATT-----------------GNWHGEICNRRKS 465 Query: 132 KRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFE 190 + + E + + ++ G+ + Y+ + + + + + + ++ D LT LPNR + Sbjct: 466 GKLYVEWLSIKQVRDEQGVPSHYVAVFSDISERKASEVRMQHLAHFDVLTNLPNRALFSD 525 Query: 191 NLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQ-QNGEVI 249 L + AR ++ + F+DLD FK +ND+ GH GDL L +V RL + + + Sbjct: 526 RLRQAIAKARRDKTQLALMFMDLDRFKPVNDQLGHQVGDLLLQEVARRLLDCVRRESDTV 585 Query: 250 GRLGGDEFLVVSLNNENADISS-LRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETT 308 R+GGDEF+V+ + E ++ + E+I + + +G+ ++ S+GI Sbjct: 586 ARIGGDEFVVMLPDLETVQAATLVAEKILAALNLVFEIGEHRIHISS-SIGIAIFPEHGQ 644 Query: 309 DADSALHAADIAMYQEKKHKQKTPFV 334 D + L +AD AMY K++ + V Sbjct: 645 DENHLLKSADAAMYLAKENGRNRVQV 670 Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 18/177 (10%), Positives = 46/177 (25%), Gaps = 20/177 (11%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 ++ + + + + + E + + + +++ + Sbjct: 235 AQDQIIEQNQERKRAQHALALSEERWKFALEGAGDGVWDRNLQTGEVVFSKRYKEIYGFA 294 Query: 65 PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFL-STPIHLPDGSFYG 123 + + + D++ D A +++ + DGS+ Sbjct: 295 ADELENHTE-------AWDARVHPDDLARIEADRAAYFAGEKSSYANERRMQCKDGSWKW 347 Query: 124 TLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLT 180 L R V + G + I + E AL + T LT Sbjct: 348 IL-----------SRGMVVARDAQGQPLRMIGTHTDITARHEREEALR-LASTVILT 392 >UniRef50_B7KEH4 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KEH4_CYAP7 Length = 1027 Score = 364 bits (934), Expect = 3e-99, Method: Composition-based stats. Identities = 68/319 (21%), Positives = 126/319 (39%), Gaps = 25/319 (7%) Query: 24 RQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDE 83 ++ L++L+ T+ + D E ++++ Y + R + Sbjct: 469 QKQLKILKQATEQSPVSVIITDAEGHIEYVNRKFEKLTGYTRQEVIGKNP-----RLLKS 523 Query: 84 NCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKR-QWSERAEQV 142 D+ W ++G W + Sbjct: 524 GKISQDQYKQLW-----------------RTLTSGQEWHGEFHNQKKNGELFWESASISP 566 Query: 143 LQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHL 202 ++ G+I +I + + + + + L Q+ D+LTGLPNR + L A Sbjct: 567 IKNEEGVITHFIAIKEDITRRKAQDRILAYQANYDALTGLPNRFLAIDRLKLAILQAERQ 626 Query: 203 NHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSL 262 ++ + FIDLD FK +ND GH GDL L QV ERL + + + RLGGDEFL++ Sbjct: 627 EQRVAVMFIDLDRFKNVNDTLGHEYGDLLLKQVAERLKKCLRKSDTVARLGGDEFLIIIP 686 Query: 263 NN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAM 321 N + + + ++I + ++L + + + AS+GI + D ++ + AD AM Sbjct: 687 NLKQPSHCKGIAKKILSSLEKPFNLLEEEAFI-SASIGITLYPDDGDDVNALMRNADTAM 745 Query: 322 YQEKKHKQKTPFVAHPALH 340 Y K+ + ++ Sbjct: 746 YLGKRGGRNDFKFYTLGMN 764 >UniRef50_Q5P5U6 Putative uncharacterized protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P5U6_AZOSE Length = 740 Score = 364 bits (934), Expect = 4e-99, Method: Composition-based stats. Identities = 65/339 (19%), Positives = 128/339 (37%), Gaps = 29/339 (8%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 + L+ + E + ++ V + + + D R+ + A + Y Sbjct: 172 LCRTALVDLSDRKREEDRL----NLIAQVFERSTDAIMITDSLNRIVSVNRAFTTVTGYS 227 Query: 65 PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGT 124 + + + L + F+ S +GS+ G Sbjct: 228 ADEV-LGRNPKLLASGRHDRDFY-------------------REMWSA--IERNGSWSGE 265 Query: 125 LCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLP 183 + ++E ++ +G I I A + R A + + ++ D LT LP Sbjct: 266 ISNRRKNGEIYNEWLTIHAVRNESGGIENCIAIYAEITDQRAAASRIQFLAHYDPLTLLP 325 Query: 184 NRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQ 243 NR + + + + A + + F+DLD FK IND GH GD L +V +RL Sbjct: 326 NRALLQDRMHQGLAHAAREGTRAAVLFLDLDRFKTINDSLGHLVGDHLLQEVAQRLKASV 385 Query: 244 QNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVE 302 + + + R GGDEF+V+ + ++ + + +I + + + + S+GI Sbjct: 386 REDDTVARRGGDEFIVMLPHVDSAEQAAHVAGKIIEAMEQTIPVNGY-VLNVSFSIGISV 444 Query: 303 VDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + D D+ + ADIAMY+ K + +++ Sbjct: 445 FPDDAMDPDTLIRNADIAMYRSKASGRNQFQFFTADMNA 483 >UniRef50_A1RPJ9 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=16 Tax=Proteobacteria RepID=A1RPJ9_SHESW Length = 1511 Score = 363 bits (933), Expect = 4e-99, Method: Composition-based stats. Identities = 64/337 (18%), Positives = 134/337 (39%), Gaps = 30/337 (8%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 + ++++ + +E+ + + V + + + ++ +++ + A ++ Y Sbjct: 939 MTGTNRNITSRKLIENELVLSSQ----VLNSMNEAVVVAGLDYKIRSVNPAFSAITGYS- 993 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 ++ D++ +A + L + G + Sbjct: 994 ----------------------ERQITDKYLVHLAYKQQRELFNSIEQQLLRHKHWVGEI 1031 Query: 126 CAASSEKR-QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 + +++ + G + ++ + + ++A L + D+LTGLPN Sbjct: 1032 WIRNKQRKAILVWLEINQVIDIKGETSHFVAVFTDITERKKAEQDLRFLASFDTLTGLPN 1091 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R + L + A N+ + + F+DLD FK IND GH+ GDL L +RL + Sbjct: 1092 RTLFQDRLNHAITQAHRANNIVALLFLDLDRFKHINDSMGHHVGDLLLKAAAKRLQNAVR 1151 Query: 245 NGEVIGRLGGDEFLVVSLNNENADISS-LRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 G+ + RLGGDEF ++ ++ + E++ + + + L D L S+GI Sbjct: 1152 EGDTVARLGGDEFTIILEGVAKTKAATLISEKVLRAFQTPFLLEDKSLTIST-SIGISLY 1210 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + +ADS + AD AMY K + L+ Sbjct: 1211 PNDADNADSLIKFADTAMYHAKSLGRNNFQFYTHKLN 1247 >UniRef50_C6P3H7 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P3H7_9PROT Length = 912 Score = 363 bits (933), Expect = 5e-99, Method: Composition-based stats. Identities = 72/345 (20%), Positives = 134/345 (38%), Gaps = 31/345 (8%) Query: 5 IIARVSQSLA------KEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARN 58 ++ +S+ ++ + Q L++ + + S + D + + I A Sbjct: 326 LLDEMSRDISFSLDNFDREVQRKAAEQSLQLAASIYENSSEGMMITDADNLIMAINPAFT 385 Query: 59 SQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPD 118 Y E+ + + + K + F+ W + L Sbjct: 386 RITGYAMEDV-IGKNPGILKSGRHDMDFY----QAMWNE-----------------ILGT 423 Query: 119 GSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 G + G + + + + G + I + Q +E+ + Q+ D Sbjct: 424 GKWIGEIWDRRKSGEVYPKWLTINTVFNDDGKVHHRIALFTDISQKKESEELIWRQANFD 483 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 LTGLPN R + L +R + + + F+DLD+FK +ND GH +GDL L + Sbjct: 484 HLTGLPNWRMFHDRLEQEIKKSRRVELPLAVVFLDLDHFKEVNDTMGHATGDLLLKEAAL 543 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYPGA 296 RL++ + + + RLGGDEF ++ + D I + E I + + L +L Y Sbjct: 544 RLSSCVRESDTVARLGGDEFALLLGELSDQDSIERVNECILNKFSAPFQL-GNELAYISV 602 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 S+G+ + T+ ++ L AD AMY K + A+ S Sbjct: 603 SIGVTIYPSDATEIEALLRNADQAMYAAKNSGRNRSCYYTQAMQS 647 Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 56/181 (30%), Gaps = 13/181 (7%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 ++ ++Q++ + + E L + M ++ +VD E++L + A Sbjct: 180 SALSEINQAIVRMEQEEQLFPLVCRCAVKFGGMNMAWVAQVDKESKLL-LPAASYGAGQD 238 Query: 64 IPENFTVSW------DYSLCKRAIDENCFF----SDEVPDRWGDCIAARNLGITTFLSTP 113 + +S A EN S PD A G + + P Sbjct: 239 YLDGIVISPLADVPEGRGPVGVAFRENHPVIINDSSNDPDFAPWQNRASEQGWHSIAAFP 298 Query: 114 IHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQ 173 I G + L + + +L + I+ + Q + A +L Sbjct: 299 I-PRGGRPFAVLSVYHQHIDAFDGESIALLDEMSRDISFSLDNFDREVQRKAAEQSL-QL 356 Query: 174 S 174 + Sbjct: 357 A 357 >UniRef50_C7RMB6 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RMB6_9PROT Length = 922 Score = 363 bits (932), Expect = 6e-99, Method: Composition-based stats. Identities = 79/364 (21%), Positives = 142/364 (39%), Gaps = 45/364 (12%) Query: 1 MSDQIIARVSQSLAKEQSLESLV-RQLLEMLEMVTDMESTYL--------TKVDVEARLQ 51 +++Q+ RV + A+ +S + R++ E ++ + D + Sbjct: 316 LNEQLEQRVLERTARLESANQELNREIAERSRAEAELRIAAIAFDSQEGMMVTDAHGVIL 375 Query: 52 HIMFARNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLS 111 + A + Y E+ + + D D Sbjct: 376 RVNRAFVEETGYSAEDVVG-----------RKRTMLTSGREDAALDD---------AMWE 415 Query: 112 TPIHLPDGSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAAL 170 T G++ G + + ++ GL+ Y+ + Q + L Sbjct: 416 TVQRC--GAWQGEVWDRRKNGEVYPVWLTISAVKGQGGLVTHYVATHIDITQRKAVEDQL 473 Query: 171 IAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDL 230 ++ D LT LPNRR + + L + + + ++ I FIDLDNFK +ND GH+ GD Sbjct: 474 HKLAFYDPLTQLPNRRLLLDRLGHVLAGSTRSRNQGAIMFIDLDNFKALNDTQGHDVGDR 533 Query: 231 FLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN-----ADISSLRERIQQQIRGEYH 285 L +V +RL + + + + RLGGDEF+V+ + A + ++ +I + Y Sbjct: 534 LLAEVAQRLKSSVRQCDTVARLGGDEFVVMVQDLAADSMVVAQVEAVAGKILAALDCPYR 593 Query: 286 LG-DVDL-------YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHP 337 L D +L Y+ AS+GI +T+ D L AD+AMYQ K + P Sbjct: 594 LVFDAELGRRNALNYHCTASIGITLFGAHSTNVDELLKQADLAMYQAKDSGRNAIRFFDP 653 Query: 338 ALHS 341 + + Sbjct: 654 EMQA 657 >UniRef50_B3PKJ2 EAL domain protein n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PKJ2_CELJU Length = 798 Score = 362 bits (931), Expect = 7e-99, Method: Composition-based stats. Identities = 71/335 (21%), Positives = 137/335 (40%), Gaps = 29/335 (8%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 V + + + + E+ +R + V + + + D R+ + A + Y ++ Sbjct: 219 VVREITQRRQQENQLR----LWAKVFEASNEAILITDANFRIISVNRAYETIMGYREQDV 274 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + D + F+ + V + G + G L Sbjct: 275 -LGVDTLEVGAKLQTYSFYRNLVS---------------------LLKERGHWQGELINQ 312 Query: 129 SSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 ++ + + G YI + + + + A + ++ D+LTGLPNR Sbjct: 313 RKSGEEFPSWFSVTQVTNSRGEPEHYIAIFNDITEHKNSRAQIEFLAHHDALTGLPNRIL 372 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + + L + R K+ I FIDLD FK +ND GH GD L + +RL + G+ Sbjct: 373 LNDRLEMAITQVRRQGEKLGILFIDLDRFKNVNDSLGHGVGDQILQEAAKRLTANVRTGD 432 Query: 248 VIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 + RLGGDEF+V+ +++ L ++++Q++ Y + + L+ S+GI + Sbjct: 433 TVSRLGGDEFVVLFPRVRTEGNLADLTIKLREQLQLPYTVDGISLHI-TPSIGIAVYPDD 491 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 D ++ + AD AMY K+ + P L++ Sbjct: 492 GEDPNTLIKNADAAMYLAKEKGRNNYQFYTPTLNA 526 >UniRef50_P72843 Regulatory components of sensory transduction system n=1 Tax=Synechocystis sp. PCC 6803 RepID=P72843_SYNY3 Length = 840 Score = 362 bits (931), Expect = 9e-99, Method: Composition-based stats. Identities = 73/334 (21%), Positives = 134/334 (40%), Gaps = 29/334 (8%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 V + + + + E ++ L + E + DV+ + ++ Y Sbjct: 270 VMRDITERRKAEKQLKILSQACEQ----SPASIVITDVQGNITYVNPKFEEISGYKSAEV 325 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 R + ++ W + RN ++G Sbjct: 326 LGRNP-----RILKSGNKTQEDYELMWKTLASGRN-----------------WHGEFHNR 363 Query: 129 SSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + ER + + G++ Y+ + + + ++ AL Q++ D LTGLPNR Sbjct: 364 RKNGELYWERASISPISNQQGIVTHYVAVKEDITKEKQQAEALFHQAHYDHLTGLPNRIL 423 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + L A H + F+DLDNFK +ND GH++GD L++V ERL + + Sbjct: 424 AKDRLQQAIESALRQKHIFGLMFLDLDNFKKVNDTLGHDAGDQLLVEVSERLQRALRQTD 483 Query: 248 VIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 + RLGGDEFL++ + + ++ +R+ + +R +L ++ + G S+GI + Sbjct: 484 TVARLGGDEFLIILDQVSHSRKLMAIAQRLLRVMRQPVNLQGLEFFVHG-SIGITVFPDD 542 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 AD L AD AMY K + P ++ Sbjct: 543 GFHADVLLRNADTAMYAAKLAGRNMFRFFTPHMN 576 >UniRef50_D1U882 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U882_9DELT Length = 958 Score = 362 bits (930), Expect = 1e-98, Method: Composition-based stats. Identities = 77/336 (22%), Positives = 134/336 (39%), Gaps = 29/336 (8%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 + + + E +R + E V + ++ D + + A + + Sbjct: 382 RDELRAEIDERTRAEQRLR----LYEKVFENALEGISITDKSGVMVAVNPAFTTITGFTS 437 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 E R + + + + W A GS++G + Sbjct: 438 EEVIGKNP-----RVLKSDMHGEEFYGEMWTTLKA-----------------RGSWHGEI 475 Query: 126 CAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 + E + ++ G IA Y+ + ++ L Y D LTGLPN Sbjct: 476 WNRRKNGESYPEILSISSIRDDDGEIANYVAVFHDISDMKHKEEQLAHHLYHDGLTGLPN 535 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R + + L+ S A K+ + F+DLDNFK IND FGH GD L V ERL L + Sbjct: 536 RVLVLDRLSMALSHANRTGTKVAVLFLDLDNFKKINDSFGHAQGDTLLKAVAERLVALYR 595 Query: 245 NGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 + + + R GGDEFLVV ++ ++ L E +Q+ + + +++ S+G+ Sbjct: 596 DEDTVARQGGDEFLVVVVDVHEEREVVDLAEGLQRVFEEPFVIKGQEVFI-TPSIGVTLY 654 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 + D S + AD+AMYQ K + + F+ + Sbjct: 655 PDDGQDPASLVKNADMAMYQSKAKGRNSYFLFTQQM 690 >UniRef50_Q88QU8 Sensory box protein n=22 Tax=Gammaproteobacteria RepID=Q88QU8_PSEPK Length = 1247 Score = 362 bits (930), Expect = 1e-98, Method: Composition-based stats. Identities = 67/335 (20%), Positives = 134/335 (40%), Gaps = 29/335 (8%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 +++ + + ++ ++ + V + + + D++ R+ + A + Y E Sbjct: 667 IARDITERHLMQEKLQ----LAATVFENTAEGVLITDIDQRISAVNRAFSEITGYS-EIE 721 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + L ++ F+ +G + G + Sbjct: 722 ALGQTPRLLASGQHDSAFYL-------------------AMWHQ--LTAEGHWQGEIYNK 760 Query: 129 SSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + ++ I ++ A + ++ A A L Q++ D LTGLPNR Sbjct: 761 RKNGELYPSWLTISAVRNSDREITHFVAVFADISSIKHAQAKLDYQAHHDPLTGLPNRTL 820 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 L + + A+ N + + F+DLD FK IND GH GDL L + +RL ++ + Sbjct: 821 FENRLQGVLTCAQVSNRQGAVLFLDLDRFKHINDSLGHPVGDLLLKGIAQRLKEQVRDVD 880 Query: 248 VIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 + RLGGDEF+++ +D S++ ++ + G+ + ++ AS+GI + Sbjct: 881 TVARLGGDEFIILLPGLHKPSDASTIANKLLACFNAPFQAGEHE-FFTSASIGISLYPQD 939 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 TD + + AD AMY+ K + L + Sbjct: 940 GTDVSTLIRNADAAMYRSKAKGRNRVEAYTRDLTA 974 Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 17/171 (9%), Positives = 37/171 (21%), Gaps = 25/171 (14%) Query: 2 SDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKV-DVEARLQHIMFARNSQ 60 ++ + +++ + E +R + V L + L + A Q Sbjct: 411 HQPVMRGLMIDISETKRTEDALRLSEQKFASVFQQCPDILLIARHSDGCLLEVNEAFEEQ 470 Query: 61 KMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGS 120 P+ + GI Sbjct: 471 IGLPPDQVIGRT---------ATDLDLWGVEGSGPLLLERLHQGGIRNL----------- 510 Query: 121 FYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 + S + ++ G A + + QL+E L Sbjct: 511 ---EMSFRRSNGQLFTGLTSAETFELDGTPALVVAV-RDISQLKETQQQLQ 557 Score = 44.7 bits (105), Expect = 0.005, Method: Composition-based stats. Identities = 17/167 (10%), Positives = 44/167 (26%), Gaps = 21/167 (12%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 I R+S +++ +LE +R + + S + D + + + Sbjct: 288 INRRLSSEISRRIALEQELRSSEYHYRGLVESLSAIAWEADAND-FTYSYVSPH------ 340 Query: 65 PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGT 124 E+ + + ++ C + G L + DG Sbjct: 341 AEDLLGYPLSDWLRPGFWRSILHPEDALWAQAYCDSETAAGRDHSLDYRVIRADGQPL-- 398 Query: 125 LCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 W +++ + + + + + AL Sbjct: 399 ----------WVRNIVSMIEHGHQPVMR--GLMIDISETKRTEDALR 433 >UniRef50_C6P1Q1 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P1Q1_9PROT Length = 1135 Score = 362 bits (929), Expect = 1e-98, Method: Composition-based stats. Identities = 73/338 (21%), Positives = 135/338 (39%), Gaps = 35/338 (10%) Query: 10 SQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFT 69 S+ + + + +E ++ E + D + + + A Y E Sbjct: 562 SRDITERKKIEVEIQIAATAFE-----AQEGMLITDADRNILRVNRAFTDITGYSAEEV- 615 Query: 70 VSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAAS 129 + + + + ++ F++ +T + G++ G + Sbjct: 616 IGKNPRILSSGLHDSHFYA-------------------AMWNT--LVATGAWKGEIWNKR 654 Query: 130 SEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAI 188 + E A ++ G++ Y+ + + + A + + ++ D LTGLPNRR + Sbjct: 655 KNGEVYPERLAITAVKDARGVVINYVASLSDITLHKAAEDEIRSLAFFDPLTGLPNRRLL 714 Query: 189 FENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEV 248 + L + + F+DLDNFK +ND GH+ GDL L QV +RL + G+ Sbjct: 715 MDRLQQALVASSRSGKAGALLFLDLDNFKNLNDTLGHDIGDLLLQQVAQRLKNCVREGDT 774 Query: 249 IGRLGGDEFLVVSLNNENADISSLRE------RIQQQIRGEYHLGDVDLYYPGASLGIVE 302 + R+GGDEF+V+ + I + + +I + YHL +++ S+G Sbjct: 775 VARIGGDEFVVMLEDLSAESIEAASQTEAVGWKIISTLNKPYHLEKFEVH-STPSIGATL 833 Query: 303 VDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 D D ADIAMYQ KK + T P + Sbjct: 834 FDSRPQIIDDLFKQADIAMYQAKKAGRNTMRFFDPQMQ 871 Score = 84.3 bits (208), Expect = 5e-15, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 49/166 (29%), Gaps = 27/166 (16%) Query: 7 ARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPE 66 R++Q+ A+ + E +L + V D + + D+ A + + A Y PE Sbjct: 313 RRLAQNEAQRREAE----RLQRINATVFDSSAEAIIITDLNANIISVNPAFTQITGYSPE 368 Query: 67 NFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLC 126 + R + + W L D + G L Sbjct: 369 DVLGKNP-----RILSSGQQSKGFYRELWEA-----------------LLRDNFWQGELV 406 Query: 127 AASSEKRQWS-ERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 ++ + + G + +I + + ++ + L Sbjct: 407 NRHKNGSLYNIHLSISASRDGTGQLQHFIGVTTDITERKQHESELR 452 Score = 41.6 bits (97), Expect = 0.043, Method: Composition-based stats. Identities = 22/170 (12%), Positives = 50/170 (29%), Gaps = 25/170 (14%) Query: 4 QIIA--RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQK 61 Q+ V+ + + + ES +R E ++ S + +D + + + S Sbjct: 430 QLQHFIGVTTDITERKQHESELRMESEKNMVLLRNASDGIHILDPDGNIIEASDSFCSML 489 Query: 62 MYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSF 121 Y ++C+ + F + + D + T T DG+ Sbjct: 490 GYQRNEM---LGMNVCQ---WDADFSDPRIVKLFRDQFTNKG---RTQFETRHRRKDGTV 540 Query: 122 YGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 E + LQ G A + + + ++ + Sbjct: 541 IDV------------EISGYPLQ-LHGKPALF-NSSRDITERKKIEVEIQ 576 >UniRef50_C6P1A0 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P1A0_9PROT Length = 1011 Score = 362 bits (929), Expect = 1e-98, Method: Composition-based stats. Identities = 70/344 (20%), Positives = 124/344 (36%), Gaps = 35/344 (10%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 ++ +++ + + +R E + D + + A Y Sbjct: 437 SLLLGITRDVTASMHAKQQLRIAATAFE-----SQEGMLVTDAVGAILRVNQAFTRITGY 491 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 + + + + + F+ + W G + G Sbjct: 492 TADEV-IGKNPRILNSGRHDAYFY----KEMWERIK-----------------RTGEWEG 529 Query: 124 TLCAASSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGL 182 + + E ++ G + Y+ + + + + ++ D LT L Sbjct: 530 EIWNRRKNGDVYPEHLTITAVKDAGGNVVNYVATLMDITASKASEEEIRNLAFFDPLTRL 589 Query: 183 PNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTL 242 PNRR + + L + I FIDLDNFK +ND GH+ GDL L +V RL++ Sbjct: 590 PNRRLLQDRLQQALASCGRSGKSGAILFIDLDNFKNLNDTLGHDIGDLLLEKVAIRLSSC 649 Query: 243 QQNGEVIGRLGGDEFLVVSLNNEN------ADISSLRERIQQQIRGEYHLGDVDLYYPGA 296 + G+ + R+GGDEF+V+ + + S+ +I + Y LG Y Sbjct: 650 VREGDTVARIGGDEFVVMLEDLSDNILDAAEQTESVGSKILASLNVPYQLGIHT-YDNSP 708 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 S+G + D L ADIAMYQ KK + T P + Sbjct: 709 SIGATLFNDNHNSIDELLKQADIAMYQAKKAGRNTMRFFDPRMQ 752 Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 18/166 (10%), Positives = 42/166 (25%), Gaps = 21/166 (12%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 + + + Q+ + +++ + L + + E + VD L + A Sbjct: 313 QKLIVRHAQRLQATSNDLQESEKRLRTIFETEPECIKVVDRNGELVEMNQA--------- 363 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 A+ E + + D +A + L + + + Sbjct: 364 ------------GLAMLEAATLEEARQKKLIDYVAPEDQAAFLALHRRVMNGESAVLEFK 411 Query: 126 CAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 E + G I+ + V A L Sbjct: 412 ITGLKGTLHHLETHATPMPDANGNISLLLGITRDVTASMHAKQQLR 457 >UniRef50_B8HP13 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Cyanobacteria RepID=B8HP13_CYAP4 Length = 1094 Score = 362 bits (929), Expect = 1e-98, Method: Composition-based stats. Identities = 79/335 (23%), Positives = 137/335 (40%), Gaps = 23/335 (6%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY-IPEN 67 V +++ K + E+ +RQ E + + + + + A Y P+ Sbjct: 505 VIRNITKRKRAENELRQAEEKYRSIFENATEGIFQSSPSGSYISANPALARIYGYDSPQE 564 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 I + + + ++ I G T + ++ DGS Sbjct: 565 LQHHLTD------IGRQLYVNPDRRQQFVHSIL--EQGQVTDFESQVYRKDGSVI----- 611 Query: 128 ASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 W + ++ G I + + ++A + Q++ D LTGLPNR Sbjct: 612 -------WISENARAVRDRQGNILYFEGTVEDISARKQAELTIHYQAFHDLLTGLPNRAL 664 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + L + AR H + + F+DLD FK+IND GH GD L QV +RL + + Sbjct: 665 FDDRLNQALADARRYQHLLAVFFLDLDRFKVINDTLGHAIGDQLLQQVAQRLLPCLREID 724 Query: 248 VIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 I R GGDEF ++ + + AD + ER+ ++ + L +L+ ASLGI + Sbjct: 725 TIARWGGDEFTLLLPHVQTPADSVKIAERLLASLKPPFSLKGHNLHI-TASLGIALYPHD 783 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 D + L AD A+Y+ K+ + + P L+S Sbjct: 784 GEDGTTLLRNADAALYRAKEEGRNGLYCYTPMLNS 818 Score = 78.6 bits (193), Expect = 3e-13, Method: Composition-based stats. Identities = 23/175 (13%), Positives = 46/175 (26%), Gaps = 22/175 (12%) Query: 1 MSDQIIARVS---QSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFAR 57 ++D +A + + + + ES +RQ E + + + + E R + A Sbjct: 246 LADPAVAGIVVNTRDITDHKRTESALRQAEEKYRSIFENAVEGIFQSSPEGRYIRVNPAL 305 Query: 58 NSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLP 117 Y L D + R I T ++ Sbjct: 306 ARMYGYDS-------PEELLAHLTDIGRQLYVDPERRAEFQRLIDQQTIVTHFEAQVYRR 358 Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIA 172 DGS W + ++ G + Y + + L+ Sbjct: 359 DGSII------------WITEHARAVRDGTGKLLYYEGTVENITDRKRTELQLLQ 401 Score = 57.4 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 21/168 (12%), Positives = 42/168 (25%), Gaps = 23/168 (13%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 I + + E+ + Q + S +T +D + + + Y P Sbjct: 128 IEGFITDITPLKRAEAALIQAEARWRSLIHNSSDLITILDAQGTVLYHSPVLKRLLGYHP 187 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTF-LSTPIHLPDGSFYGT 124 +N C+ + A T + DGS+ Sbjct: 188 QN---------CEGKSAFGLVHPQDRKQVQQTFQQAITHTEFTLTVEYRFRHQDGSW--- 235 Query: 125 LCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIA 172 R +L A +A + + + +AL Sbjct: 236 --------RFLESTGRNLLADPA--VAGIVVNTRDITDHKRTESALRQ 273 >UniRef50_A1ALY4 Diguanylate cyclase/phosphodiesterase n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ALY4_PELPD Length = 1238 Score = 361 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 72/333 (21%), Positives = 126/333 (37%), Gaps = 30/333 (9%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVS 71 ++ + E+ + E+ V + S + D R+ + A + Y E + Sbjct: 668 DISARRRAEATL----ELWGRVFECTSESIMITDAAQRIVSVNQAFCATTGYRAEEI-IG 722 Query: 72 WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 + + + +F W GS+ G Sbjct: 723 QSSLALRSDVHDGIYF----RQLWRGIR-----------------KRGSWQGEFWCRHKN 761 Query: 132 KRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFE 190 + + G + YI + + + ++ D+LT LPNR E Sbjct: 762 GEVSPQWMVVNTVHDRQGTVTNYIALFTDISAQKSQEQRIQHIAHHDALTNLPNRLLCME 821 Query: 191 NLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIG 250 L A + + FIDLD+FK IND GH+ GD L+ RL+ ++G+ + Sbjct: 822 RLILALQQAHRNGRHVAVIFIDLDHFKNINDSLGHHVGDCVLVTAANRLSMGVRDGDTVS 881 Query: 251 RLGGDEFLVVSLNN-ENADISSLR-ERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETT 308 RLGGDEF+++ + ++ I + R+ +R Y G +L+ S+GI + Sbjct: 882 RLGGDEFVIILADIEDSHQIEEIMKHRLLPLMRQPYDAGGYELH-CSCSIGISIFPEDGL 940 Query: 309 DADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 D D+ L AD AMY+ K+ + L+S Sbjct: 941 DKDTLLRNADTAMYRAKEVGRNNYHFYTEELNS 973 >UniRef50_Q1PY13 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PY13_9BACT Length = 857 Score = 361 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 69/335 (20%), Positives = 126/335 (37%), Gaps = 27/335 (8%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 V + + + E ++ L +E + D + R+ +I + PE Sbjct: 284 GVIRDITGSKHAEEMICTLSLAVEQ----SPAMIAVTDTDGRIDYINPKFCKVTGFEPEE 339 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 D + A G + + Sbjct: 340 VLGKN--------------LIDIIQPGGESLSMADKTLWKA------ITSKGEWKEAFSS 379 Query: 128 ASSEKR-QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 W+ + ++ G I+ Y+ + + ++A + +Y DSLT LPNR Sbjct: 380 RKKHGELFWTSLSLSAIKSNEGFISHYLAIMEDITEHKQAEERIHYLAYYDSLTALPNRE 439 Query: 187 AIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNG 246 + L A + +AFID+D FK +ND GH++GD L + +RL + + Sbjct: 440 LFHDRLNMAIIHAHRKQQMLAVAFIDIDRFKKVNDTLGHSTGDRLLKIIADRLKSCIREE 499 Query: 247 EVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDP 305 + + R GGDEF+++ D + + +RI ++++ + D DL AS+GI Sbjct: 500 DTVSRQGGDEFVLLLTEISRMEDANDVTQRILKKLKEPVIIDDHDLCI-SASIGIALYPG 558 Query: 306 ETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + T A++ L AD AMY K+ + + Sbjct: 559 DGTTAEALLKNADSAMYISKESGRDNYHFYSSTVQ 593 Score = 48.1 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 19/187 (10%), Positives = 55/187 (29%), Gaps = 25/187 (13%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFA----RNSQK 61 +AR + + + +E ++ + + + ++ + ++D I A Sbjct: 116 LARTMRYSMERKQIELELQDGKQRYKRLVEILPDIIYRIDANGYFTFINEAVQVFGYEPD 175 Query: 62 MYIPENFTVSWDYSLCKRAIDENCF--FSDEVPDRWGDCIAA--RNLGITTFLSTPIHLP 117 I ++F+ K+ +S + D R G I + Sbjct: 176 ELIGKHFSELIHPDDLKKVSRSEVLSEYSGKTSDYKTTPKLFDERRTGQRKTTGLQIRVK 235 Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQY--------------IQKEALVEQL 163 + + +W ++ E+++++ A Y + + Sbjct: 236 SKK-SPEYMEYTIQIIKWPKKHEKIIEVAA--TGHYDSDIMKNDKRFVGTVGVIRDITGS 292 Query: 164 REANAAL 170 + A + Sbjct: 293 KHAEEMI 299 >UniRef50_A1K5Q6 GGDEF/EAL/PAC/PAS-domain containing protein n=1 Tax=Azoarcus sp. BH72 RepID=A1K5Q6_AZOSB Length = 828 Score = 361 bits (927), Expect = 2e-98, Method: Composition-based stats. Identities = 75/333 (22%), Positives = 131/333 (39%), Gaps = 29/333 (8%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 V + + + ++ E +RQ V D ++ D + +Q + A + Y Sbjct: 242 VGRDITERRAAEERLRQ----AATVFDNTVEGISITDRDGIIQSVNPAFSRITGYAEAEV 297 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 C I ++ + T G + G + Sbjct: 298 IG------CHTRILQSGRHGADY--------------YRAMWRT--LARTGQWQGEIWNR 335 Query: 129 SSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + + ++ G ++ Y+ + + Q+++A + L ++ D LTGLPNR Sbjct: 336 RKTGEVYPQWLTIGTVRDDEGEVSNYVAVFSDISQIKDAQSQLERLAHYDPLTGLPNRAL 395 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + + L S AR + + F+DLD FK +ND GH +GD L + ERL ++ Sbjct: 396 LGDRLAHAISRARRAGTSVAVLFLDLDGFKNVNDSLGHPAGDRLLQIIAERLCGALRSEG 455 Query: 248 VIGRLGGDEFLVVSLNNENADI-SSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 + R GGDEF VV + + S + E + +I L + AS+GI + Sbjct: 456 SVSRFGGDEFAVVLEDVVRGEAVSEVAEHLIAEIARPLDLDGHGAHV-SASIGIALFPRD 514 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 DA + + AAD AMY+ K + T H + Sbjct: 515 GDDATTLIKAADTAMYRSKALGRNTFSFHHEDM 547 Score = 59.7 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 21/170 (12%), Positives = 40/170 (23%), Gaps = 16/170 (9%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 + + + E VR+ E L + + D E R A + Sbjct: 108 LVGTILDITDRKQAERRVRESEERLGALIQALPDAVFLKDGEGRWLVTNGAAQALFGLAE 167 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 ++ D L + D + + G+ L + Sbjct: 168 RDWFGRTDLELGSEDPARAEVHAVCAR---NDELVWQQGGMRQML-------------EI 211 Query: 126 CAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSY 175 +R E L G + + + R A L + Sbjct: 212 VEDGQGRRLVFEATRIPLFDSVGQRKGIVVVGRDITERRAAEERLRQAAT 261 >UniRef50_C5S5K8 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S5K8_CHRVI Length = 1069 Score = 361 bits (927), Expect = 2e-98, Method: Composition-based stats. Identities = 76/333 (22%), Positives = 133/333 (39%), Gaps = 28/333 (8%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 ++ ++ +RQ V + + D+E R+ + A Y Sbjct: 498 IAGLAVTRVRADTRLRQ----AATVFESTREGVIITDLEGRILDVNRAFTEISGYSEPEV 553 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + + SL + ++ F+ W G + G + Sbjct: 554 -LGRNPSLLRSNRQDHAFY----QAMWHSLKTT-----------------GHWQGEIWNR 591 Query: 129 SSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + + + G + Y+ + QL+++ A L + D LT LPNRR Sbjct: 592 RKSGELYPQILTINTVADSQGRPSHYVGVMTDISQLKQSEARLEHLVHYDPLTNLPNRRL 651 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + L A ++ + F+DLD FK +ND GH SGD+ L + RL+ + + Sbjct: 652 VQSRLEHALERADRQGGRVAVLFVDLDRFKTVNDSLGHPSGDVLLELLARRLSERVREDD 711 Query: 248 VIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 + RLGGDEFLV+ N + D +++ E + ++ +HL + Y GAS+GI + Sbjct: 712 TLARLGGDEFLVLLENLQRPEDAAAVAESLLSLLQQPFHLPNGQELYVGASIGISLYPDD 771 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 + AD+AMYQ K+ + T P+L Sbjct: 772 GHTVTDLIQHADVAMYQAKEEGRNTYRFYTPSL 804 >UniRef50_C5V0K3 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V0K3_9PROT Length = 1561 Score = 361 bits (927), Expect = 3e-98, Method: Composition-based stats. Identities = 75/323 (23%), Positives = 125/323 (38%), Gaps = 24/323 (7%) Query: 18 SLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLC 77 + + + ++ D S L D + + A Y + + + SL Sbjct: 995 TARRELDEQKKLTTKFFDAASEGLMITDSHQNIIKVNHAFVRMTGYDEADV-IGKNPSLL 1053 Query: 78 KRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSE 137 E+ F+S W + G + G L + + E Sbjct: 1054 SSGKHEDTFYSA----MWQE-----------------INQHGWWQGELWNRRKDGTHYLE 1092 Query: 138 R-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLF 196 L+ G + YI + + ++ A L D LT LPNR + + F Sbjct: 1093 WLTIHTLRDEHGHLTNYIAIFSDITLIKAAQRRLEYMVAHDELTSLPNRNELRGRMAQTF 1152 Query: 197 SLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDE 256 + A+ + FIDLDNFK +ND GH+ GD+ L QV ERL + + + R+GGDE Sbjct: 1153 ARAQRHGGTFALMFIDLDNFKNVNDNLGHDYGDVLLQQVAERLGLCVRTEDTVARIGGDE 1212 Query: 257 FLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHA 316 F V+ + I++ +RI + Y + + ++ AS+GI + D ++ Sbjct: 1213 FNVLLDDVSETQIANTAQRILDHVSKPYLIKEQQVFV-SASIGIAVYPKDAEDIETLTKN 1271 Query: 317 ADIAMYQEKKHKQKTPFVAHPAL 339 AD AMYQ K + + L Sbjct: 1272 ADSAMYQAKDKGKDSYQFFTSDL 1294 >UniRef50_A0L2H7 Diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(S) n=12 Tax=Bacteria RepID=A0L2H7_SHESA Length = 1228 Score = 360 bits (925), Expect = 4e-98, Method: Composition-based stats. Identities = 71/340 (20%), Positives = 142/340 (41%), Gaps = 28/340 (8%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 +Q+I + + + +++ + + +L V +T +D + + A Sbjct: 657 EQLILFIVEDITEQERTVAR----VNLLAQVFQQSGEGITIMDANDIIVDVNSAFTQITG 712 Query: 63 YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY 122 Y + C+ E S + R G + Sbjct: 713 YSRDEIIGKN----CRFLEAERTDRSIDAQVRAA------------------LEQTGFWQ 750 Query: 123 GTLCAASSEKRQWSERAE-QVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTG 181 G + E + + +++ G I+ YI + + + + ++ DSLT Sbjct: 751 GEVWDRHKEGFDFPKWLMMSIVRDETGAISHYIGSFTDISERKVNEERIHFLAHHDSLTL 810 Query: 182 LPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNT 241 LPNR ++ L +F A +I + FID+D+FK IND GH+ GD+ L++V RL Sbjct: 811 LPNRLSLQSRLEKVFQEAFISQTQIAVMFIDMDHFKNINDTLGHHVGDMLLLEVARRLKN 870 Query: 242 LQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIV 301 + N +++ RLGGDEF+VV + ++ ++ + E ++ + Y + + L+ S+GI Sbjct: 871 IMGNDDIVARLGGDEFVVVLSDTDHDRVAKVAEALRSGLNQTYLIDNKPLH-SSPSIGIS 929 Query: 302 EVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + ++ + AD+AMY+ K + A+++ Sbjct: 930 LFPTDGDSVEALMKNADMAMYRAKAAGRNNYQFFTAAMNT 969 >UniRef50_C6XBJ6 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XBJ6_METSD Length = 1150 Score = 360 bits (925), Expect = 4e-98, Method: Composition-based stats. Identities = 74/334 (22%), Positives = 138/334 (41%), Gaps = 29/334 (8%) Query: 10 SQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFT 69 S++++ + E +R V + S + D + + I A + Y E Sbjct: 583 SENISARKQAEEELRLAH----TVFEHSSEAMLVTDADNNIITINPAFSEMTGYSLEEV- 637 Query: 70 VSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAAS 129 + + + F+ + W G + G + Sbjct: 638 IGKNPKILSSGRQGKEFY----QELWNTLET-----------------SGEWRGEIWNRR 676 Query: 130 SEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAI 188 +++E A + G + + + + + + + A+A + Q+ D LT LPNRR Sbjct: 677 KSGEEYAEWLAINNIYSEDGKLFRRVALFSDITEKKRADALIWNQANYDLLTQLPNRRLF 736 Query: 189 FENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEV 248 + L ++H + + + FIDLD FK +ND GH+ GD LI+ R+ + + Sbjct: 737 SDRLQQEIKKSQHDHSQFALLFIDLDRFKEVNDTLGHSHGDYLLIEASHRIQRHLKETDT 796 Query: 249 IGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPET 307 +GRLGGDEF V+ N + + ++ + +R+ + Y L ++ Y AS+GI + Sbjct: 797 VGRLGGDEFTVIIANLPDPSVMTLIAQRVLDALAAPYDLEG-EIVYLSASIGITVFPEDA 855 Query: 308 TDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 T + L AD AMY+ KK+ + P + + Sbjct: 856 TTSAELLKNADQAMYEAKKNGRNRFSFFTPMMQA 889 Score = 53.5 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 17/170 (10%), Positives = 46/170 (27%), Gaps = 23/170 (13%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 ++ + K + E+ ++Q +E +M + D + R + + Sbjct: 454 MSGTRLEITKLKLAETTLKQAVEQQKMFIQQAPICVAMFDRDMRYLACSNQWQEEFGHQQ 513 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 + Y ++P++W R + + L Sbjct: 514 GSLLGLNHY-----------DVHPDIPEKW------RQAHQRALAGERLEEEE-----DL 551 Query: 126 CAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSY 175 + + W+ + I I + ++A L ++ Sbjct: 552 WIRADGQHLWTRWMITPWMDDSQTIQGIIISSENISARKQAEEELR-LAH 600 >UniRef50_C3X4J8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Oxalobacter formigenes RepID=C3X4J8_OXAFO Length = 1077 Score = 360 bits (925), Expect = 4e-98, Method: Composition-based stats. Identities = 67/336 (19%), Positives = 127/336 (37%), Gaps = 29/336 (8%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 +++ + + + E ++ + +V S + + + + + A Y P Sbjct: 506 GIARDITRRKEDEEKLQ----LAALVYKNSSEAILITNAKNEILAVNPAFERITGYTPAE 561 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 D + + F+ G + G L Sbjct: 562 IM-GKDPKILSSGRQDKAFY-------------------KAMWDA--LGKKGFWRGELWN 599 Query: 128 ASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 + V+ G + Y++ + +EA + Q+ D LTGLPNRR Sbjct: 600 RKKNGEVYLAWLTINVVYNEDGSVRYYVELSNDFTEKKEAEDMIWRQANFDFLTGLPNRR 659 Query: 187 AIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNG 246 + + L K+ + F+DLDNFK +ND GH+ GDL L+ V RLN + Sbjct: 660 MLLDRLQQEIVKVNQSGKKLALLFLDLDNFKDVNDTLGHDMGDLLLVDVAGRLNECVREI 719 Query: 247 EVIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDP 305 + + RLGGDEF V+ + ++ + + + + Y L ++ Y AS+G+ Sbjct: 720 DTVSRLGGDEFAVILTELSDLRIAETVTQCMLRSLAQPYRLDG-EIAYLSASIGMTVYPD 778 Query: 306 ETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + T ++ AD A+Y K+ + ++ + Sbjct: 779 DGTGIETLQKNADQALYAAKQAGRNRMSYFTASMQA 814 Score = 56.2 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 15/178 (8%), Positives = 46/178 (25%), Gaps = 25/178 (14%) Query: 1 MSDQIIARVSQSLAKEQS----LESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFA 56 M +Q++ + + + + + +++ Q L+ V D + + A Sbjct: 368 MRNQLLLNLEKRVEERTEDLNKVNAVLAQSEARLKSVFDNIPDLIWLKNTAGVYLTCNRA 427 Query: 57 RNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHL 116 + D L + + G + + Sbjct: 428 FENFFDLEENRIIGKTDAGL---------PTDRQADMLRPEGSRIIEEGKPEVMEQWV-- 476 Query: 117 PDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 + KR + + + ++ G + + + + +E L + Sbjct: 477 ---------TNVQTGKRVFFDVIKAPVKTPDGRLIGVLGIARDITRRKEDEEKL-QLA 524 >UniRef50_Q21SE4 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21SE4_RHOFD Length = 757 Score = 360 bits (924), Expect = 5e-98, Method: Composition-based stats. Identities = 70/333 (21%), Positives = 123/333 (36%), Gaps = 29/333 (8%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 ++ + + + E+ +R E + D + + A Y ++ Sbjct: 432 GTTEDVTERKLREADLRVAATAFECQ-----ESIMVTDANQLILRVNRAFTELFGYTAQD 486 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 + R + W G++ G + Sbjct: 487 VLGATP-----RVLQSGRHDPAFYAAMWDG-----------------ITRGGAWQGEIWD 524 Query: 128 ASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 + + V+ G ++ Y+ + + A + ++ D LTGLPNRR Sbjct: 525 RRKNGECFPVWLSITVVCGDDGGVSHYVATHTDITLRKAAEDDIRQLAFYDPLTGLPNRR 584 Query: 187 AIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNG 246 + + L S AR ++ + F+DLD FK +ND FGH +GD L V +RL + Sbjct: 585 LLQDRLHQAMSQARRERGRLALLFLDLDKFKPVNDDFGHQAGDELLQAVAQRLQACVRES 644 Query: 247 EVIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDP 305 + + RLGGDEF+++ + E D ++ E+I Q + L S GI Sbjct: 645 DTVARLGGDEFVLLLPSIEAAQDAMAVAEKIHQAFGRPFTLSAGRNATMSFSTGIAVYPE 704 Query: 306 ETTDADSALHAADIAMYQEKKHKQKTPFVAHPA 338 +D + + AD AMYQ K + + PA Sbjct: 705 HASDEKALMRHADEAMYQAKAAGRDRFVLFAPA 737 Score = 40.4 bits (94), Expect = 0.083, Method: Composition-based stats. Identities = 19/159 (11%), Positives = 45/159 (28%), Gaps = 21/159 (13%) Query: 13 LAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSW 72 + + Q ++ R + + L++ T+ + + D++ R H A P+ Sbjct: 311 IYQRQRVQQ--RMINQRLKLATEATGVGIWEFDLKTRRYHWDLAMFGLFGLNPQTVNALN 368 Query: 73 DYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEK 132 + + E+ G L+ I DG Sbjct: 369 ND-------WQQLLLPGELLRMKDATRVTIKQGQAFDLTFQIRRQDGQV----------- 410 Query: 133 RQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 ++ + + ++ I V + + A L Sbjct: 411 -RFMRNRAVLYNDGSHAASRLIGTTEDVTERKLREADLR 448 >UniRef50_Q47AF7 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Dechloromonas aromatica RCB RepID=Q47AF7_DECAR Length = 1094 Score = 359 bits (923), Expect = 7e-98, Method: Composition-based stats. Identities = 83/341 (24%), Positives = 127/341 (37%), Gaps = 15/341 (4%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY--IP 65 + + L + L ++ + +LE + + +D HI A + + Y Sbjct: 493 HILERLGQGAELSEVLELVTALLEQESPGYLCSIMLLDEAGERLHIAAAASLPEKYCRAI 552 Query: 66 ENFTVSWDYSLCKRAI---DENCFFSDEVPDRWGDCIAA-RNLGITTFLSTPIHLPDGSF 121 E + C A E + W G+ S PI G Sbjct: 553 EGVRIGDGIGSCGTAAWSGKEVFVENIATHPYWASYRDLPLKCGLRACWSFPIADSGGKV 612 Query: 122 YGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTG 181 G E SE + ++ L I + A L Q+ D+LTG Sbjct: 613 LGVFGIYRREPGLPSEAELESIRQAHHLAMVAI-------ERNRIEAKLKYQASFDALTG 665 Query: 182 LPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNT 241 LPNR + L A H + FIDLD FK +ND GH SGD L++ ER+ Sbjct: 666 LPNRSLFYIRLRDEMLRAARTGHGGALLFIDLDRFKEVNDSLGHESGDSLLVEAAERIRA 725 Query: 242 LQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGI 300 + +++ RLGGDEF+VV + + L + I + + L Y AS+GI Sbjct: 726 QVRASDLVARLGGDEFVVVLPDVRAPEHLGLLAQAIVDALVVPFVLDGHQAYV-SASVGI 784 Query: 301 VEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + DAD L AD AMY K+ + ++ + Sbjct: 785 ACYPQDAEDADILLSCADKAMYVAKELGRNGFCFFTESMQT 825 Score = 42.0 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 16/161 (9%), Positives = 37/161 (22%), Gaps = 19/161 (11%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 + + + + + LE + + + + + D + R A + +P Sbjct: 345 GIHRDITERKQLEVALAAREREFRTLVENSPEVIIRYDRDLRRVFSNPAFDQLLGVLPGE 404 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 F + + C L GS +C Sbjct: 405 TRGKEVSCCWAPRNISVDEFEAILQRVFASCRP------EECL-LEFRDERGSL---VCL 454 Query: 128 ASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANA 168 ++ G + + V L+ A Sbjct: 455 NYRLVPEFG---------LDGQVESVLGFGHNVSALKRQEA 486 >UniRef50_Q607T2 Sensory box protein/GGDEF domain protein n=2 Tax=cellular organisms RepID=Q607T2_METCA Length = 1346 Score = 359 bits (922), Expect = 9e-98, Method: Composition-based stats. Identities = 66/318 (20%), Positives = 123/318 (38%), Gaps = 24/318 (7%) Query: 24 RQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDE 83 + L + V + + D + + A + Y PE V + + Sbjct: 781 DESLLLAGKVFEAVRESIIVTDANRVIVAVNPAFSDMTGYSPEE-AVGRTPAFLQSGRHG 839 Query: 84 NCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWS-ERAEQV 142 +++ +GS+ G ++ Sbjct: 840 KEYYA-------------------AMW--RAVDQEGSWQGEFWNRRKNGELFAVLETIVT 878 Query: 143 LQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHL 202 ++ G + YI A + L+EA + +Y D L+ LPNRR + E +LA Sbjct: 879 VRDETGAMVNYIGVAADISSLKEAEEHIHHLAYYDPLSALPNRRYLMERAEYALALAERR 938 Query: 203 NHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSL 262 ++ + F+D+D+FK +ND GH GD L++V ++ + + + RLGGDEF ++ Sbjct: 939 KEELAVVFLDVDHFKDVNDSLGHQVGDELLVRVATQIKEFTRETDTVARLGGDEFALLLP 998 Query: 263 NNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMY 322 + +S + ++I +R + G S+GI + TD ++ L AD AMY Sbjct: 999 DLGRDAVSQVADKILAALRKPFEHSGQTFAVTG-SIGISLYPHDGTDFETLLRNADTAMY 1057 Query: 323 QEKKHKQKTPFVAHPALH 340 K+ + P ++ Sbjct: 1058 HAKQQGRNQFRFYDPGMN 1075 Score = 41.2 bits (96), Expect = 0.058, Method: Composition-based stats. Identities = 17/163 (10%), Positives = 37/163 (22%), Gaps = 23/163 (14%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPE-N 67 + A+ + E +R+ E + + + D + E Sbjct: 644 ILARDAERERSEMRLRESEERFRLAANSAPVLIWMGDTARGCTFFNDMWLNFTGRSLEYE 703 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 W ++ AA + + + DG + L Sbjct: 704 LGDGWLEG----------MHPEDRSRWICAYSAAFDARKPFEIEYRLRRRDGEYRTILGK 753 Query: 128 ASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAAL 170 A G YI + ++ + +L Sbjct: 754 A------------TPRFDAGGEFIGYIGSCIDISDRKKGDESL 784 >UniRef50_B8DLV2 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Desulfovibrio vulgaris str. 'Miyazaki F' RepID=B8DLV2_DESVM Length = 896 Score = 359 bits (922), Expect = 9e-98, Method: Composition-based stats. Identities = 75/334 (22%), Positives = 143/334 (42%), Gaps = 29/334 (8%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 V ++ ++ E R + E V + D E + + A + Y ++ Sbjct: 318 VVHDISGRRTAERQAR----LFERVFRNALEGICITDPEGIIVAVNPAFTTITGYPADD- 372 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 V L K ++ F+ D + +G + + Sbjct: 373 AVGQSPRLLKSHHHDSAFYED-------------------MW--RALVEEGRWEDEIWNR 411 Query: 129 SSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + E + + G Y+ + +L+ + + Q++ D+LTGLPNR Sbjct: 412 RRNGEVYPEWLSISAIPGPTGRTEYYVAVFHDITELKAKESQIQHQAHHDALTGLPNRAL 471 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + + L + AR + K+ + +DLDNFK +ND GH GD++L Q E++ + + + Sbjct: 472 LRDRLGMAINGARREDRKVAVLSVDLDNFKQVNDSLGHMVGDIYLQQAAEQMRQMVRPQD 531 Query: 248 VIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 + R+GGDEF+VV + E D + + ER+ + + + +L+ GAS+GI + Sbjct: 532 TLARVGGDEFVVVLQDVEGERDAAQVAERLLARFTDPVRVQEHELFV-GASVGIALFPDD 590 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 D D+ + ADIAM + K+ ++ + PA++ Sbjct: 591 GDDPDTLVRNADIAMSRAKEQGKRRYHLFTPAMN 624 >UniRef50_C7RS22 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RS22_9PROT Length = 1006 Score = 359 bits (922), Expect = 1e-97, Method: Composition-based stats. Identities = 74/340 (21%), Positives = 132/340 (38%), Gaps = 35/340 (10%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 VS+ + + + E R E + D A + + A Y + Sbjct: 438 VSRDVTERKQAEQWERIAATAFE-----SQQGMFITDANAVILRVNQAFTDITGYAADE- 491 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + L + F++ +G + G + Sbjct: 492 CIGQTPKLLSSGRHDASFYAAMRES---------------------IERNGVWQGEIWNR 530 Query: 129 SSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + E ++ G++ Y+ + + A + ++ D+LTGLPNRR Sbjct: 531 RKNGDVFPEWLTISSVRDGDGVVTHYVSALTDMSAHKAAQEEIRHLAFYDALTGLPNRRL 590 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + + L + + + + FIDLDNFK +ND GH+ GD L QVG+RL++ + G+ Sbjct: 591 LHDRLRVAIASSVRSERQGALLFIDLDNFKTLNDTLGHDMGDRLLQQVGQRLSSSVREGD 650 Query: 248 VIGRLGGDEFLVVSLNNE--NADIS----SLRERIQQQIRGEYHLGDVDLYYPGASLGIV 301 + RLGGDEF+V+ N + + + E+I + + Y L D Y+ S+GI Sbjct: 651 TVARLGGDEFVVMLENLGERPEEAAGQSRIVGEKIIKLLNRPYDLSGHD-YHNTPSVGIT 709 Query: 302 EVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + D + AD+AMY+ K + P + + Sbjct: 710 LFGGQQVGIDELMKRADLAMYEAKASGRNALRFFDPRMQA 749 Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 19/170 (11%), Positives = 53/170 (31%), Gaps = 24/170 (14%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 +Q + + LE+ +R+ E ++++ ++ +D++ + + + + + Sbjct: 312 GTTQDITARKQLEASLREQKEFFRLISESIGEHIAVLDLQGQRLYNSPSY---GQFFGDT 368 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 + S ++ G + + DGS Sbjct: 369 RDLRGSDSFAD-------VHPEDRERVKRVFRQTTETGRGQEIEYRLVRNDGSVRHM--- 418 Query: 128 ASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREAN--AALIAQSY 175 A +VL G A+ + V + ++A + A ++ Sbjct: 419 ---------ASAGRVLGDRQGEAARVVVVSRDVTERKQAEQWERIAATAF 459 >UniRef50_Q478F7 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Dechloromonas aromatica RCB RepID=Q478F7_DECAR Length = 739 Score = 359 bits (922), Expect = 1e-97, Method: Composition-based stats. Identities = 67/341 (19%), Positives = 129/341 (37%), Gaps = 34/341 (9%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 ++ +++ + +E +R + + + DV R+ + A Y E Sbjct: 151 GIASDISERRRMEHDLR-----IAAIAFESQAAIMVTDVNQRILRVNQAFTKLTGYSAEE 205 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 + + K + F++ + G + G + Sbjct: 206 -AIGQTPGMLKSGRQDADFYA-------------------AMWCS--LGQCGHWQGEIWN 243 Query: 128 ASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 + E ++ G + Y+ + + L+ A + + ++ D LT +PNRR Sbjct: 244 RRKNGEIFPEWLTISGVRDGRGKVTHYVSTFSDISNLKVAESEIHHLAFYDPLTAMPNRR 303 Query: 187 AIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNG 246 + L A+ + ID+D+FK +ND GH+ GD L++V RL+ + G Sbjct: 304 LLLNRLDQACVSAKRSGQFGALLIIDIDHFKTLNDTLGHDVGDHLLVEVARRLSACIREG 363 Query: 247 EVIGRLGGDEFLVVSLNNENA------DISSLRERIQQQIRGEYHLGDVDLYYPGASLGI 300 + R GGDEF+V+ + + E+I+ ++ Y L Y+ AS+GI Sbjct: 364 DTAARQGGDEFVVMLEELGSEQEGAAVQAEIVAEKIRLELARPYLLNGDTEYFRSASIGI 423 Query: 301 VEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + D L ADIA+Y+ K + A+ + Sbjct: 424 SLFFGQEKTIDILLKQADIALYKAKDAGRNAIRFFDTAMQT 464 Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/147 (12%), Positives = 39/147 (26%), Gaps = 5/147 (3%) Query: 25 QLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDEN 84 L ++ + + + + + + + A Y PE V + L DE Sbjct: 26 LLCDLQLSIFEHAGRAIILTNPDGLISYFNRAAQQMLGYTPEEV-VGRETPLLFHLADEI 84 Query: 85 CFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQ 144 + A + L I + + A VL+ Sbjct: 85 SACARLYSCEPDGTPPAGFGVFISRLKLKIRD-EADWT---YVRKDGSHLPVSLAVSVLR 140 Query: 145 LFAGLIAQYIQKEALVEQLREANAALI 171 G + Y+ + + + R L Sbjct: 141 DAKGGVQGYLGIASDISERRRMEHDLR 167 >UniRef50_Q3IEZ9 Putative uncharacterized protein n=2 Tax=Pseudoalteromonas RepID=Q3IEZ9_PSEHT Length = 842 Score = 358 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 71/336 (21%), Positives = 132/336 (39%), Gaps = 24/336 (7%) Query: 7 ARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPE 66 + + + L + ++ L + + D + + + + A Y Sbjct: 261 SELEKVLVQRDLALQHSQRNLYLANKIIDSSLDGIMITHSNSTIMQVNPAFTQLTGYKEH 320 Query: 67 NFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLC 126 L D++ + G + G +C Sbjct: 321 EVIGKCPSILSSGRHDKSFYIK--------------------MWDA--INKTGVWQGEIC 358 Query: 127 AASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNR 185 + E ++ A Y + + + + A ++ +Y D LTGLPNR Sbjct: 359 NRKKNGDIYIEWLTIIEIKEPNNSDAIYAAIFSDITERKNAEDKIVQLAYFDELTGLPNR 418 Query: 186 RAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQN 245 R + L + A H + + FIDLD FK +ND GH++GD L V R+ Sbjct: 419 RLFNDRLKMALAAAHRDQHLLAVMFIDLDRFKEVNDSLGHSAGDCLLTLVAARIEATLNE 478 Query: 246 GEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDP 305 G+ + RLGGDEF+V+ N+ ++SL ++I + + L V++ AS+G Sbjct: 479 GDTLARLGGDEFVVLCEINKIDAVASLADKILNNLNSPFQLDHVEVGV-TASIGAAVYPD 537 Query: 306 ETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + D+++ L ADIAMY+ K + + + P++++ Sbjct: 538 DGLDSETLLKHADIAMYRSKDVGRNSFQLFKPSMNA 573 >UniRef50_C5V5K2 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V5K2_9PROT Length = 925 Score = 358 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 126/338 (37%), Gaps = 35/338 (10%) Query: 10 SQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFT 69 +++ + Q E+ +R E + D + + + Y E Sbjct: 350 ARTHVRAQLAETDLRIAATAFE-----SEESMIITDSRGIILKVNQVFTATTGYTSEE-A 403 Query: 70 VSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAAS 129 V SL K F+ + W G + G + Sbjct: 404 VGKTPSLLKTDRHSAEFY----HEMWRQIK-----------------QTGKWQGEIWDKR 442 Query: 130 SEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAI 188 + + ++ G++ Y+ + + + A +I+ ++ D+LTGLPNRR + Sbjct: 443 KNGEIYPKLLNIYAVKSKNGVVTHYVGSYTDLTERKMAEEKIISLAFYDTLTGLPNRRLL 502 Query: 189 FENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEV 248 + L + + FIDLD FK +ND GH+ GDL L QV RL + + Sbjct: 503 LDRLNYALASGLRTGKNGALLFIDLDKFKTLNDTLGHDIGDLLLKQVAHRLKACVREIDT 562 Query: 249 IGRLGGDEFLVVSLNNENADISSLR------ERIQQQIRGEYHLGDVDLYYPGASLGIVE 302 + R+GGDEF+V+ + + + E+I +R Y L + ++ S+GI Sbjct: 563 VARIGGDEFVVMLEDLNIESVEAAAQTEVIGEKILAALRMPYQLLTNE-FHSSVSIGISL 621 Query: 303 VDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 D L ADIAMYQ KK + + Sbjct: 622 FSNNGQSQDEPLKQADIAMYQAKKSGRNKLRFFDQRMQ 659 >UniRef50_B7V0E6 Motility regulator n=25 Tax=Pseudomonas RepID=B7V0E6_PSEA8 Length = 1415 Score = 358 bits (921), Expect = 1e-97, Method: Composition-based stats. Identities = 58/342 (16%), Positives = 127/342 (37%), Gaps = 33/342 (9%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 + +++ +++++ E +R M V + + + D + + + + Y P Sbjct: 835 LLGIARDISQQRRAERELR----MAATVFEHSTAAIMVTDPAGYIVQVNDSFSRLTGYSP 890 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 + +D+ GS+ G + Sbjct: 891 AD------------VLDQQPRLLTADRQEANQLKHVLAS----------LQHSGSWEGEI 928 Query: 126 CAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 + ++ G + ++ + + + + + + +Y D+LT LPN Sbjct: 929 LQKRKTGELYPSWVGITAVRDEEGDLVSFVCFFSDISERKASERRIHRLAYYDALTHLPN 988 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R + L T A +++ F+DLD FK IND GH +GD L +V RL+ Sbjct: 989 RTLFQDRLHTALQQAERNGQWVVLMFLDLDRFKPINDSLGHAAGDRMLQEVATRLSACVS 1048 Query: 245 NGEVIGRLGGDEFLVVSLNNENAD-----ISSLRERIQQQIRGEYHLGDVDLYYPGASLG 299 + + R+GGDEF ++ + + + + E I ++ + L + ++ AS+G Sbjct: 1049 QDDTVARMGGDEFTLLLPSQGDREIALKRAIQVAELILGRLARPFTLEGRE-FFVTASIG 1107 Query: 300 IVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + + + + AD AMY K+ + +++ Sbjct: 1108 VALSPQDGAELSLLMKNADTAMYHAKEMGKNNFQFYQAEMNA 1149 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 47/169 (27%), Gaps = 9/169 (5%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 V++ + + +R+ M+ + S + D E ++ + Y PE Sbjct: 697 GVAKDITFTVEANNALRENGRRYRMLAENISDVIFSTDAELNASYVSPSVQHVFGYSPE- 755 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNL-GITTFLSTPIHLPDGSFYGTLC 126 + + ++ G R+ G L+ P + C Sbjct: 756 -------WALLNGLHQTATNPRQLGRLNGLLRRVRHAIGDRQKLAELRENPGQHLFALDC 808 Query: 127 AASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSY 175 + ++ E ++ + + Q R A L + Sbjct: 809 LRADGRKIPIELRIVLMWDEHDRFEGLLGIARDISQQRRAERELRMAAT 857 >UniRef50_C5V740 Diguanylate cyclase with PAS/PAC sensor n=3 Tax=Gallionellaceae RepID=C5V740_9PROT Length = 565 Score = 358 bits (920), Expect = 2e-97, Method: Composition-based stats. Identities = 68/320 (21%), Positives = 124/320 (38%), Gaps = 26/320 (8%) Query: 18 SLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLC 77 +LE +L E+ + + S + D + R+ + A Y E + D + Sbjct: 267 TLEQANERL-ELFAKMFENSSEAIIITDADKRILTVNPAFELITQYRSEEV-IGCDPKIL 324 Query: 78 KRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSE 137 ++ ST G + G + + + Sbjct: 325 SSGKQTAEYY-------------------QAMWST--IEAAGKWSGEIWNRRKNGEVYPQ 363 Query: 138 R-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLF 196 + ++ G + YI + + Q +E + ++ D LT LPNR + L Sbjct: 364 WLSIGAVKNHNGKVINYISLFSDITQRKEDEHRIEMLAHYDVLTKLPNRALFADRLQHAL 423 Query: 197 SLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDE 256 +A + K+ + F+DLD FK IND GH +GD L V ERL+ + + + R GGDE Sbjct: 424 QVADRSHRKVGLMFLDLDKFKAINDTLGHLAGDQLLQSVAERLSRCVRQSDTVCRQGGDE 483 Query: 257 FLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALH 315 F+++ DI + ++I ++ + +G+ + S+G D++ Sbjct: 484 FMILLEEIHSPLDIEGVAQKIALEMSMPHQMGE-ESRVVSFSIGAAIYPDHAIDSEKLSQ 542 Query: 316 AADIAMYQEKKHKQKTPFVA 335 AD AMYQ K+ + + Sbjct: 543 CADQAMYQAKEAGRNNFKLY 562 >UniRef50_Q47ZI3 Sensory box/GGDEF/EAL/CBS domain protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47ZI3_COLP3 Length = 858 Score = 358 bits (920), Expect = 2e-97, Method: Composition-based stats. Identities = 78/347 (22%), Positives = 142/347 (40%), Gaps = 30/347 (8%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQL---LEMLEMVTDMESTYLTKVDVEARLQHIMFAR 57 MSD +A V + Q + +R+ L + E + + + D + + + A Sbjct: 266 MSDIELAYVEELHQIVQQRDIALRESKKHLLVAEKIIEASLDGIMITDEQGTIISVNPAF 325 Query: 58 NSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLP 117 Y L + + SD W L Sbjct: 326 TRVTGYKEAEVL-----GLNSKILSSGRHTSDFYQQLWLC-----------------ILE 363 Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQ--YIQKEALVEQLREANAALIAQSY 175 G + G + + + ++++ G+ + + + + + A + ++ Sbjct: 364 QGVWQGEIWNKRKNSEIYPQW-LTIIEISEGVDNNKVFAAIFSDISERKLAEKRIENLAF 422 Query: 176 TDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQV 235 D LT LPNRR F+ + ++A N+K+ + FIDLD FK +ND +GH GDL L Sbjct: 423 YDELTQLPNRRLFFDRVDMALAIAHRKNNKMALFFIDLDYFKEVNDNYGHRIGDLLLRSF 482 Query: 236 GERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYP 294 +RL + G+ + R+GGDEF ++ + D I RI +++R YH+ L Sbjct: 483 AKRLTESSKEGDTVARIGGDEFTLLLTDMREVDHICKACNRIVEKLRQPYHIEGHALNIT 542 Query: 295 GASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 S+GI + T+ + + ADIAMY+ K + + + PA+++ Sbjct: 543 T-SIGIAVYPEDGTNEEELMKNADIAMYRAKDIGRNSFQLFTPAMNA 588 >UniRef50_Q47GC0 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Betaproteobacteria RepID=Q47GC0_DECAR Length = 862 Score = 358 bits (919), Expect = 2e-97, Method: Composition-based stats. Identities = 73/338 (21%), Positives = 125/338 (36%), Gaps = 35/338 (10%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 + + + E +R E T + D +Q + A Y E Sbjct: 258 IYTDITDRKQSEEQLRIAAAAFESQT-----CMIITDANRVIQRVNRAFIETTGYSAEEA 312 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 R + +D + W G++ G + Sbjct: 313 VGQTP-----RLLQSGRHGADFYREMWE-----------------TIHRTGAWQGEIWGR 350 Query: 129 SSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + + + + G ++ YI + + ++A + A ++ D LTGLPNR Sbjct: 351 RKNGEVYPKWLSISAVVGTNGRVSHYIGTHNDITERKKAEERINALAFFDQLTGLPNRTL 410 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + + L + + + FIDLDNFK +ND GH+ GD L QV RL ++G+ Sbjct: 411 LLDRLKQTILSSGRSDSHGALLFIDLDNFKTLNDTLGHDVGDQLLKQVALRLTHCVRDGD 470 Query: 248 VIGRLGGDEFLVVSLNNEN------ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIV 301 + RLGGDEF+VV N D ++ E+I + Y L ++ AS+G Sbjct: 471 TVARLGGDEFVVVLANLNTNDKEAAQDTETVAEKILATLNQTYQL-GHVTHHSSASIGAT 529 Query: 302 EVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 D + AD++MY+ K + P++ Sbjct: 530 LFKGPLIPIDDLMKQADLSMYKAKAAGRNAVRFFDPSM 567 Score = 55.1 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 19/156 (12%), Positives = 35/156 (22%), Gaps = 19/156 (12%) Query: 18 SLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLC 77 LE +R L D L D + Y+ Sbjct: 11 RLEQALRTSEARLHSFFDATPDALLISDAHGTITMANQQVEKLLGYVAAELV-------- 62 Query: 78 KRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSE 137 D VP+R+ T +P G+ G A + + Sbjct: 63 ------GKSIEDLVPNRFKASHPVLRSEFTA---SPRARRMGN--GMAVKARRKDGSECD 111 Query: 138 RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQ 173 + ++ + + + + L Q Sbjct: 112 VDVSLSRIETDEGMFFASALRDISERKRKEEELRRQ 147 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 52/167 (31%), Gaps = 23/167 (13%) Query: 7 ARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPE 66 A + +++ + E +R+ +L + +T D + RL + F + + Sbjct: 128 ASALRDISERKRKEEELRRQNGVLSTIFQSFPGGITLFDADLRL--VAFNDQFKALLDLP 185 Query: 67 NFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPI--HLPDGSFYGT 124 + + I N + P +AA F+ I PDG Sbjct: 186 DVLFEQPEPDFETLIRYNAARGEYGPGDPEQQVAAIIARTKKFVPHKIERVRPDG----- 240 Query: 125 LCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 + + + + L +G ++ + +++ L Sbjct: 241 -----------TSLSIRGVPLASG---GFLSIYTDITDRKQSEEQLR 273 >UniRef50_Q39R25 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=3 Tax=Bacteria RepID=Q39R25_GEOMG Length = 905 Score = 357 bits (918), Expect = 3e-97, Method: Composition-based stats. Identities = 75/337 (22%), Positives = 128/337 (37%), Gaps = 31/337 (9%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVD---VEARLQHIMFARNSQKMYIP 65 + ++ + E + L +E +T D + + ++ A Y Sbjct: 317 IISDISARKRNEQELVLLKRAME----SSINGITITDATHPDNPIIYVNPAFERITGYGV 372 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 + L D + A + DGS + Sbjct: 373 DEVIDKNPRFLRG---------DDRDQAELKKLVQAFKEEREGCFVLRNYRKDGSPF--- 420 Query: 126 CAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNR 185 W+E ++ G++ YI + + R L+ Q+ D LTGLPNR Sbjct: 421 ---------WNELFIAPVRDRDGVVTNYIGVMNDITEHRRYEEQLVYQATHDPLTGLPNR 471 Query: 186 RAIFENLTTLFSL-ARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 + + L +L A + I + F+DLDNFK +ND GH GD+ L V RL + Sbjct: 472 NLLQDRLGQALALEAFRRRNPICVMFLDLDNFKKVNDTLGHTVGDMLLKAVANRLKNCLR 531 Query: 245 NGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 G+ + RLGGDE+++V N E D+ ++ +++ L ++Y AS+GI Sbjct: 532 GGDTVARLGGDEYIIVLPNVREVPDVITVAKKMINVFAAPLLLMGNEIYV-TASIGIALF 590 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + D+ L AD AMY K+ + ++ Sbjct: 591 PTDGETVDALLKNADAAMYHAKEQGKNNYQFYSAEMN 627 Score = 54.3 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 15/164 (9%), Positives = 40/164 (24%), Gaps = 24/164 (14%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 + + + + + +R+ E L+ + + VD ++ A + E Sbjct: 191 GIVRDVTESRETGERLRETNEKLDTLIQASPQGIVAVDCGGKVTLWNRAAVEIFGWSAEE 250 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 + +R + R L + T + L Sbjct: 251 VLGKP--------------YPVAPAERAAEHRKLRELVLQGKRITDV---------ELRR 287 Query: 128 ASSEKRQWS-ERAEQVLQLFAGLIAQYIQKEALVEQLREANAAL 170 + + + +G I + + + L Sbjct: 288 RRKDGSPIDVSLSAAPICDGSGTPLGVITIISDISARKRNEQEL 331 >UniRef50_UPI0001698C53 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698C53 Length = 457 Score = 357 bits (917), Expect = 3e-97, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 128/333 (38%), Gaps = 29/333 (8%) Query: 11 QSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTV 70 Q +++ ++++ +R + V D + D + + + A + Y Sbjct: 124 QDISERKAVKRRLR----LATTVFDNTHDGILVTDEKGTILTVNPAFSEITGYSEAEVR- 178 Query: 71 SWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASS 130 + L + F+ ST G + G + + Sbjct: 179 GQNPRLLRSGKQRADFYE-------------------AMWST--IRQRGRWQGEIRNRNR 217 Query: 131 EKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIF 189 + + ++ G + Y+ + + L+ + + + D LTGLPNR Sbjct: 218 DGDIFPAWLTISSVKDDQGEVTNYVGIFSDISPLKHSLEQIEHLANHDPLTGLPNRLLFL 277 Query: 190 ENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVI 249 + L AR H + + F+D+D FK IND GH GD L+++ R+ + + + Sbjct: 278 DRLKVAVRQARRGGHALAVLFLDIDRFKDINDSLGHAMGDQLLLEMAARVRGQVREEDTV 337 Query: 250 GRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETT 308 RLGGDEF+++ + E+A + + ++ Q + L ++ S+GI + Sbjct: 338 ARLGGDEFVILIGDVESASEAELVARKVMQGLEVPIRLETSEI-ILRVSMGISLYPNDGE 396 Query: 309 DADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 AD + ADIAMY K+ + + + Sbjct: 397 SADELIRHADIAMYHAKERGLSEYHFYNDEMSA 429 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 18/152 (11%), Positives = 38/152 (25%), Gaps = 20/152 (13%) Query: 25 QLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDEN 84 QL + + D + L +D + R+ + A + E + A + Sbjct: 8 QLSQRFAAILDATTVGLFGLDRDGRVTFVNGAACRLLGHSEEGLLGGTHHDRVHYAKSDG 67 Query: 85 CFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWS-ERAEQVL 143 + I L T +G + R + E L Sbjct: 68 STYP------------LSECPIHQSLQTGKI-----VHGEELFFHRDGRGIAVEFTCSPL 110 Query: 144 QLFAGLIAQYIQKEALVEQLREANAALIAQSY 175 G + + + + + L + Sbjct: 111 VDG-GEVEGVVVTFQDISERKAVKRRLR-LAT 140 >UniRef50_Q31EA2 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Piscirickettsiaceae RepID=Q31EA2_THICR Length = 1289 Score = 357 bits (917), Expect = 3e-97, Method: Composition-based stats. Identities = 64/332 (19%), Positives = 131/332 (39%), Gaps = 29/332 (8%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVS 71 ++ ++ E + + V + D AR+ + Y E + Sbjct: 717 DISDKRQAEERL----NLAASVFTHAREGIMITDKHARILDVNKGFTQITGYEREEV-LG 771 Query: 72 WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 + ++ F++ + +G + G + + Sbjct: 772 LNPNILNSGCQSKEFYNLMWKTLF---------------------EEGHWSGEIWNRNKN 810 Query: 132 KRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFE 190 + + ++ G+ Y+ + L+E L ++ D+LT LPNR + + Sbjct: 811 GTVYPQMITITAIKNSDGMTQNYLALFTDITSLKEQQRQLEHIAHYDALTQLPNRSLLAD 870 Query: 191 NLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIG 250 L ++ N + + FIDLD FK +ND GH++GD L+++ +R+ + + + + Sbjct: 871 RLQQAIFASQRHNSLLAVLFIDLDGFKKVNDLHGHDAGDELLVELSKRMKNILREEDTLA 930 Query: 251 RLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTD 309 R+GGDEF+VV +N + +D + R+ + + ++ AS+G+ + D Sbjct: 931 RIGGDEFIVVLVNLDAPSDCEMILRRLLESTSESVDIEG-EVVSVSASIGVTFYPKDNVD 989 Query: 310 ADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 AD + AD AMYQ K+ + + S Sbjct: 990 ADLLMRHADQAMYQAKQSGKNRYHYFDVQMDS 1021 Score = 51.2 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 20/163 (12%), Positives = 45/163 (27%), Gaps = 21/163 (12%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 +++ + + + E LE++ D+E+ + + Y PE F Sbjct: 457 LARDVTARVQQSKELVEKDERLELILSASKIGQWDWDIESNVMLWDERSCTMLGYPPEAF 516 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + +D + D+ A G + I D + Sbjct: 517 KMDYDK-------WASLLHPDDAY-VMKRLKAHLEKGEAYSVEYRIRSGDDDW------- 561 Query: 129 SSEKRQWSERAEQVLQ-LFAGLIAQYIQKEALVEQLREANAAL 170 W E Q ++ G + + + + + L Sbjct: 562 -----VWVESQGQTIESDAKGRPIRMVGIYMDITDRKRSEDLL 599 Score = 49.3 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 48/168 (28%), Gaps = 21/168 (12%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 + + + E L+ + E L + ++ +T D E ++ A E Sbjct: 584 GIYMDITDRKRSEDLLVENEERLRTIFEILPIGITLTDREGQIVECNSASEVLLGIPREE 643 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 A + + +D + A R+L + + + Sbjct: 644 HLARKYD-----AKEWTIYRADGTAMPSEEYAAVRSLTNQETIKNQV----------MKV 688 Query: 128 ASSEKRQWSERAEQVLQLFA-GLIAQYIQKEALVEQLREANAALIAQS 174 S W + L G++ YI + R+A L + Sbjct: 689 CHSGDCTWLNVSATPLNHPNYGVVVTYI----DISDKRQAEERL-NLA 731 Score = 48.5 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 19/162 (11%), Positives = 43/162 (26%), Gaps = 11/162 (6%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMEST-YLTKVDVEARLQHIMFARNSQKMYIPENFTV 70 +++ + L++ ++Q+ L + D + + D E + Y + Sbjct: 193 DISRRKQLQAELKQVATTLTNIMDSSTEVAVIATDTEGVITEFNSGAEKLLGYSAQELVG 252 Query: 71 SWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASS 130 E+ R A + F L + S + Sbjct: 253 KETPL--------KFHSEKEIQARAQRLSEALKRPVKGFQVFTEKLKEDSPQDHEWTYAR 304 Query: 131 EKRQWSERA--EQVLQLFAGLIAQYIQKEALVEQLREANAAL 170 + + + Y+ V +LR + AL Sbjct: 305 KDGVLVPVSLIVTPILDENHQKVGYLGVAQDVTELRRSQQAL 346 >UniRef50_C6XEG9 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=3 Tax=Betaproteobacteria RepID=C6XEG9_METSD Length = 718 Score = 357 bits (917), Expect = 4e-97, Method: Composition-based stats. Identities = 68/339 (20%), Positives = 131/339 (38%), Gaps = 21/339 (6%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 + + Q + + + E +++ + + + + + + + A Y Sbjct: 138 EALEGFIQDITQRKLNEQALQEAERRYRNIFENSIEGIFQTSQDGQYINANPALARIYGY 197 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 + + I + + E + + + + + I+ DGS Sbjct: 198 ESPEELIQSLNN-----IAQQLYVQPESRQAFLTLMQLEDRVVN--FESQIYRRDGS--- 247 Query: 124 TLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLP 183 W + ++ AG + + + + + NA + Q+ D LTGLP Sbjct: 248 ---------TIWISENARAVRNDAGKLLYFEGTVEDITERKSYNALIEYQATHDDLTGLP 298 Query: 184 NRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQ 243 NR + + L S A K+ + F+DLD FK IND GH GD LI + RL + Sbjct: 299 NRTLMQDRLLQAISYADRTASKLAVVFVDLDKFKDINDSMGHFIGDQLLIAMARRLESCI 358 Query: 244 QNGEVIGRLGGDEFLVVSLNNENADI-SSLRERIQQQIRGEYHLGDVDLYYPGASLGIVE 302 ++ + + R GGDEF+++ N D S +R+ + D + +S+GI Sbjct: 359 RDSDTVARPGGDEFVLLLSNIHGMDALSQTLQRVLALTSEPCSIEGKD-FTVTSSIGISL 417 Query: 303 VDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + +++ L AD AMY+ K+ + L+S Sbjct: 418 YPDDGKTSETLLKNADTAMYKAKQEGKNNFQFYTRELNS 456 >UniRef50_C6NZD9 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6NZD9_9PROT Length = 1149 Score = 357 bits (916), Expect = 5e-97, Method: Composition-based stats. Identities = 62/339 (18%), Positives = 127/339 (37%), Gaps = 31/339 (9%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 + R +++ E+L++ L + + D++A +++ Y Sbjct: 580 ALERFDAETERKKMSETLLKLSLA-----VEQSPNSIVITDLDANIEYANSNFTKVTGYS 634 Query: 65 PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGS-FYG 123 + + + T+ HL G + G Sbjct: 635 LDEVLGKN-----------------------PRFMQSGKTPKATYEDMWAHLTRGEPWKG 671 Query: 124 TLCAASSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGL 182 L + ++ E + G + Y+ + + + R + + D LTGL Sbjct: 672 ELFNRRKDGTEYIESVLISPVSQVDGRVMNYLAIKEDITEKRLTEERIEKLEHFDHLTGL 731 Query: 183 PNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTL 242 PNR + E SLA+ ++ + F+DLD+FK IND GH+ GD L+ V +RL Sbjct: 732 PNRTQLNERFKYALSLAQRSGEQMTVMFLDLDHFKDINDTLGHSIGDQLLMDVAKRLKET 791 Query: 243 QQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVE 302 ++ + + R GGDEF+++ + + + ++ + + + +L S+GI Sbjct: 792 LRDEDTVSRQGGDEFILILPGTDENGAAHVAAKLMEAVSQAFQFEQHEL-VATCSIGIAI 850 Query: 303 VDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + + ++ AD AMY+ K + + + Sbjct: 851 YPHDGENFETLSKNADTAMYRVKHDGRNGFCFFTSEMQA 889 Score = 47.8 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 29/180 (16%), Positives = 64/180 (35%), Gaps = 14/180 (7%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 +++ +Q++ + + L + M+ ++ +D L + + + Y+ Sbjct: 424 ALSQCNQAIVRCSNKTELFPIICRDAVNFGGMKMAWIGILDQVTGLVEPVASYGAGTEYL 483 Query: 65 -----PENFTVSWDYSLCKRAIDENCFF------SDEVPDRWGDCIAARNLGITTFLSTP 113 + A+ E+ F +D V W + A G S P Sbjct: 484 DNLHVSIDGHEPGGSGPTGIALREDRPFWCQDFANDPVTAVWHER--AAEYGWGASASIP 541 Query: 114 IHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQ 173 +H G GTL + EK + E A +L A I+ +++ + ++ + L+ Sbjct: 542 LHCH-GIVVGTLTLYAEEKNAFDEPARNLLLEMAMDISFALERFDAETERKKMSETLLKL 600 Score = 42.7 bits (100), Expect = 0.020, Method: Composition-based stats. Identities = 17/159 (10%), Positives = 41/159 (25%), Gaps = 22/159 (13%) Query: 15 KEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDY 74 + + + L D L ++ ++ +RN + + Sbjct: 282 QIRLRTQQLADSSSQLRATLDAIPDLLFEIGLDGHFYSYHSSRN--------DLLTAPAT 333 Query: 75 SLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQ 134 S + I + D + N+ + +G T + + Sbjct: 334 SFIGKKI--GDVLPPDAADICMSALQEANMTGRS---------NGK---TYALSLPQGES 379 Query: 135 WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQ 173 W E + Q ++I V Q + ++ Sbjct: 380 WFELSISKKQDAKNQAPRFIVLVRDVTQRKVNETHILRL 418 >UniRef50_A1WXR7 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Halorhodospira halophila SL1 RepID=A1WXR7_HALHL Length = 749 Score = 356 bits (915), Expect = 6e-97, Method: Composition-based stats. Identities = 70/332 (21%), Positives = 130/332 (39%), Gaps = 27/332 (8%) Query: 10 SQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFT 69 + + + E +R + V + + D + +Q I A Y Sbjct: 177 LMDITERRRSEEQLR----IAARVFEDAGDAIVVTDPDGHVQTINNAFTRITGYTEGEAL 232 Query: 70 VSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAAS 129 + +L F ++ G + G + Sbjct: 233 GNTVCALLDSGRHSEAFHKEKQES---------------------LDRSGYWQGEIWHRR 271 Query: 130 SEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAI 188 + E + G ++ + + QL++A++ + D LTGLPNR Sbjct: 272 KGGELYPEWLTINRIDDATGQPQHFVAVFSDITQLKDAHSRSEYLANHDPLTGLPNRSLF 331 Query: 189 FENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEV 248 + L + + ++ + F+DLD+FK IND GH GD L+QV ERL L ++ + Sbjct: 332 QDRLQQAIAQTQRHEGQVGLMFLDLDHFKTINDTLGHEVGDELLVQVAERLGELVRDVDT 391 Query: 249 IGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETT 308 + R+GGDEF VV + + ++ S+ +R+ + + G + + +L S G+ + Sbjct: 392 VARIGGDEFTVVLTDCDPEEVGSIAQRLVEGLGGTFVVDGREL-QATPSAGLALYPRDGE 450 Query: 309 DADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 D + AAD+AMY+ K+ + + LH Sbjct: 451 DVHTLCKAADMAMYRAKEDGRNRLRLCESGLH 482 Score = 41.2 bits (96), Expect = 0.057, Method: Composition-based stats. Identities = 14/166 (8%), Positives = 36/166 (21%), Gaps = 22/166 (13%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 + + Q + L+ + +D E R+ A + + P Sbjct: 48 QQELRIQNEELQQARDRLETALDRYHDLFQRAPVGYLLLDDEGRIWEANRA--AADLLAP 105 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 S ++ + A L + Sbjct: 106 GGDLTGQLLSDFVAVDAQDALYLHWRALTAARAPQAVELTLA------------------ 147 Query: 126 CAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 A + E + + + ++ + + R + L Sbjct: 148 WAEGASCAVRMESSVEPTADRS--PCRFRCALMDITERRRSEEQLR 191 >UniRef50_C6P464 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P464_9PROT Length = 1347 Score = 356 bits (914), Expect = 7e-97, Method: Composition-based stats. Identities = 73/336 (21%), Positives = 131/336 (38%), Gaps = 28/336 (8%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 + + + + + E +RQ V + + D++ + A Y Sbjct: 773 LMGFFRDITERKQTEDALRQG----AAVFESSHNGIIITDLDGHILAANQAYADISGYTE 828 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 R ++ D W + A GS+ G L Sbjct: 829 SELLGQNP-----RILNSGRQSRDFYRKMWANIKEA-----------------GSWQGEL 866 Query: 126 CAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 + A ++ G Y+ + + QLR+ A ++ D LT LPN Sbjct: 867 WNRRKNGEIYPTWLAVSAVRNDQGKATHYVGISSDLSQLRQTEAEREHLAHYDPLTDLPN 926 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R + +LT + A+ ++++ + ++DLD FK IND G+ GD L+ + ERL + Sbjct: 927 RLLLRSHLTHALAQAKRHHNQVGVLYLDLDRFKNINDSLGYQVGDELLVTLTERLTMHMR 986 Query: 245 NGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 + +++ RLGGDEFL+V + E D + + + + + + L + GAS+GI Sbjct: 987 SEDLLARLGGDEFLLVLEHINEPEDSAIVARSLLETLAQPFVLHGEREIFIGASIGISIF 1046 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 + A+ + AD AM+Q K + T L Sbjct: 1047 PNDGDSAEQLIQHADAAMHQAKTLGRNTYHFYTEDL 1082 Score = 63.9 bits (155), Expect = 7e-09, Method: Composition-based stats. Identities = 20/168 (11%), Positives = 50/168 (29%), Gaps = 26/168 (15%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHI-MFARNSQKMYIPEN 67 VS+ + + + E+ +R + + + + D R + A Y E Sbjct: 651 VSEDITERKQAETALRDSEDRFRSIFNNAIDGILLADSGTRKFIMGNSAIARMLGYSNEE 710 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTP-IHLPDGSFYGTLC 126 + ++ + + A G +T S + DGS + Sbjct: 711 LL----------QLGTEDIHPEQDKEYYIAQFAMMVRGESTLSSNAVVKRKDGSVF---- 756 Query: 127 AASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 +++ L++ G + + + ++ AL + Sbjct: 757 --------YADIKASPLRI--GDKVYLMGFFRDITERKQTEDALRQGA 794 >UniRef50_B5VXY3 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Arthrospira RepID=B5VXY3_SPIMA Length = 1092 Score = 356 bits (914), Expect = 7e-97, Method: Composition-based stats. Identities = 67/341 (19%), Positives = 119/341 (34%), Gaps = 29/341 (8%) Query: 2 SDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQK 61 + + + E ++ M D + D E +Q++ Sbjct: 519 QETAYLASLTDVTDFKKTEDQLK----MFSRACDQSPVSIVITDSEGDIQYVNPKFEEIT 574 Query: 62 MYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSF 121 Y R + E W + Sbjct: 575 GYKAGEVIGQNP-----RILKSGYTTEPEYDVLWRQ-----------------ITSGKQW 612 Query: 122 YGTLCAASSEKR-QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLT 180 G W + ++ G I +I + + Q + L Q+ D+LT Sbjct: 613 SGEFHNKKKNGELFWEHASICPMRDEEGYITHFIAVKEDITQQKHNEEILAHQANYDALT 672 Query: 181 GLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLN 240 LPNR IF+ L + A+ + + + FIDLD+FK IND GH GD L + G RL Sbjct: 673 DLPNRTLIFDRLRQAITEAQVHHSNVAVMFIDLDHFKNINDTLGHELGDFLLKEAGMRLR 732 Query: 241 TLQQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLG 299 + + +GRLGGDEFL++ ++ + ++ + ++L + + AS+G Sbjct: 733 GCIRKTDTVGRLGGDEFLLIIPKLDDLVQAEYIANQVLDVLGEPFNLCGEEAFI-SASIG 791 Query: 300 IVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 I + + + + AD AMY K+ + ++ Sbjct: 792 IASYPQDGKNVSTLVRNADTAMYAAKQEGRNVFAFFTQNMN 832 >UniRef50_C6WWM6 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WWM6_METML Length = 651 Score = 356 bits (914), Expect = 7e-97, Method: Composition-based stats. Identities = 71/338 (21%), Positives = 132/338 (39%), Gaps = 21/338 (6%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 + + ++L K+QS+E ++ E + + + D+ + + Y Sbjct: 67 LYSLFRRTLKKQQSIEQSLQASEERWKFALEGSGDGVWDWDIPSDHVFRSARWSEIYGYA 126 Query: 65 PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLS-TPIHLPDGSFYG 123 + D++ D ++S + DGS+ Sbjct: 127 ENEI-------IATAVAGRELVHPDDLAILISDVQNYFAGNSNVYISEFRLRCKDGSWKW 179 Query: 124 TLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLP 183 TL R V + G + I + + + A + ++ D LTGLP Sbjct: 180 TLA-----------RGMTVSKSADGKPLRMIGTHTDITNRKRSEAQVTHLAHYDQLTGLP 228 Query: 184 NRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQ 243 NR + A+ + + F+DLD FK +ND GH+ GD+ L V RL Sbjct: 229 NRVLFLDRFKQDIKKAQRTGQIVTLMFLDLDKFKEVNDSLGHDIGDMLLKDVARRLENCV 288 Query: 244 QNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVE 302 ++ + + R+GGDEF ++ + + +I + + I Q+ +HLGD ++ + S+GI Sbjct: 289 RDSDTVARMGGDEFTIILNDINSQVNIERIAQDILNQLTMPFHLGD-EVIHVSTSIGISN 347 Query: 303 VDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + T+ + L AD AMY K+ + P + Sbjct: 348 YPKDDTEVELLLKNADQAMYVAKEQGRNRYQYFTPVMQ 385 >UniRef50_Q47BF2 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Dechloromonas aromatica RCB RepID=Q47BF2_DECAR Length = 1038 Score = 355 bits (913), Expect = 9e-97, Method: Composition-based stats. Identities = 74/338 (21%), Positives = 137/338 (40%), Gaps = 35/338 (10%) Query: 11 QSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTV 70 + +++ + + L+R + + + D ++++ + A Y + Sbjct: 466 RDISEARKADELMR-----IAAIAFETQEAMLVTDAKSQILRVNRAFTEVTGYSAAE-AI 519 Query: 71 SWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASS 130 +L K E+ F+ D W +G + G + Sbjct: 520 GQTPALLKSGYHEDSFY----KDLWTSLK-----------------ENGLWRGEIWNRRK 558 Query: 131 EKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIF 189 + E ++ G I ++ + + +EA + + D LT LPNRR + Sbjct: 559 NGEIYPEWLTISAVRGQHGEITHFVSSFLDITKRKEAEEQIQFLALYDPLTHLPNRRLLN 618 Query: 190 ENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVI 249 E L+ + + + FIDLDNFK+IND GH+ GDL L QV RL ++ + + Sbjct: 619 ERLSKALTSSGRQRRHAALLFIDLDNFKMINDSMGHDIGDLLLRQVALRLRESVRSNDTV 678 Query: 250 GRLGGDEFLVVSLNNEN------ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 RLGGDEF+++ I + +++ + Y G+ ++ AS+G + Sbjct: 679 SRLGGDEFVILLEELSPNIHDATTQIEHIAQKMLDSLVQPYKFGEFS-HHCTASIGAIPF 737 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 T +S L +AD+AMY+ K + F PA+ + Sbjct: 738 MDATETIESLLKSADMAMYKAKAAGKNRLFFFDPAMQT 775 Score = 43.5 bits (102), Expect = 0.012, Method: Composition-based stats. Identities = 13/167 (7%), Positives = 42/167 (25%), Gaps = 21/167 (12%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVS 71 ++A + LV L + D + +D + I + + S Sbjct: 337 AVAYLIRSKRLVGAALRERASLLDSLGEGVYGIDQNGQCTFINPKALEMLGWTADEVIGS 396 Query: 72 WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 ++ + + + + G + + Sbjct: 397 DQHARFHHHRPDGSIYPSADCPVYQTLRDGQRR-----------------QGEEWFFNKD 439 Query: 132 KRQWS-ERAEQVLQLFAGLIAQYIQKEALVEQLREANA--ALIAQSY 175 R + + + + + + + R+A+ + A ++ Sbjct: 440 GRGFPVQYSVTPISRQEDK-EGAVVTFRDISEARKADELMRIAAIAF 485 >UniRef50_C6P1Y8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P1Y8_9PROT Length = 812 Score = 355 bits (913), Expect = 1e-96, Method: Composition-based stats. Identities = 59/324 (18%), Positives = 131/324 (40%), Gaps = 30/324 (9%) Query: 24 RQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDE 83 + +++ + + + D + + A Y + + + + + Sbjct: 247 ERSMKLAASIYQSNADAIMVTDENNLIVDVNPAFTRITGYTLDEVR-GKNPRIMQSGKHD 305 Query: 84 NCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSER-AEQV 142 N F+ L +G + G + +++ + Sbjct: 306 NEFY-------------------RHMWQA--ILNEGHWQGEIWDKRKTGEIYAKLAHISI 344 Query: 143 LQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHL 202 L+ G + +++ + + + + ++ + + Q+ D+LT LPNRR + + L + + Sbjct: 345 LRRSDGGVYRHVAQFSDITEKKQKDELIFWQANYDALTCLPNRRLLNDRLAHALAANKRN 404 Query: 203 NHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSL 262 + F+DLD FK +ND GH GD+ L++V R+ + + + + R+GGDEF+V+ Sbjct: 405 EDCGALMFLDLDKFKTLNDTLGHAYGDMLLVEVARRIKSCVREVDTVARIGGDEFVVLLE 464 Query: 263 NNE------NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHA 316 N + + E+I+ + Y L D +++ S+G+ + A+ + Sbjct: 465 NLGADIKDATQAAAHIAEKIRASLSTPYQLHDK-MHHSSPSIGVSLIHCNGESAEELIKQ 523 Query: 317 ADIAMYQEKKHKQKTPFVAHPALH 340 AD+AMYQ K+ + P + Sbjct: 524 ADMAMYQAKEAGRNAVRFFDPQMQ 547 >UniRef50_Q478L4 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=5 Tax=Proteobacteria RepID=Q478L4_DECAR Length = 1665 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 67/338 (19%), Positives = 135/338 (39%), Gaps = 29/338 (8%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 + +SQ +++ E ++ V D + D + + + Sbjct: 955 QPALIGISQDISERLMAEER----QQLAASVFDNAHEGIMITDPKGNILEVNATFTELTG 1010 Query: 63 YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY 122 Y + + K + F+ + W DG + Sbjct: 1011 YSRAEALGNTPD-MLKSGHHDPAFYE----EMWQKIRD-----------------DGYWR 1048 Query: 123 GTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTG 181 G + + E+ ++ G ++ ++ + + L++ L ++ D+LT Sbjct: 1049 GEIWNRKKSGEIFVEQLTISSVRNRDGALSNFVAIFSDITLLKQHQQRLEHLAHFDALTQ 1108 Query: 182 LPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNT 241 LPNR + + + + A + + ++DLDNFK INDR+GH+ GD LI+V +RL T Sbjct: 1109 LPNRMLLSDRMQLAKAQAERSGKTLAVCYLDLDNFKPINDRYGHSVGDFLLIEVAQRLKT 1168 Query: 242 LQQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGI 300 + G+ + RLGGDEF+++ N ++ + R+ + + + AS+G+ Sbjct: 1169 CVRAGDTVARLGGDEFVLLITNLDDLNECDHAMTRVISALSQPFRVSAQ-FVTVSASIGV 1227 Query: 301 VEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPA 338 + +D+D+ L AD +MY K+ + + P Sbjct: 1228 TLYPHDGSDSDTLLRHADQSMYAAKQEGRNRYHLFDPE 1265 Score = 70.9 bits (173), Expect = 7e-11, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 52/180 (28%), Gaps = 14/180 (7%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 Q+ + L ++L ++ + +E + D + R + A + Y Sbjct: 398 QLRNQALAGLIAGEALPRVLELIALSVEAEIPGWHCSILLADKDGRQLRLGAAPSLPPAY 457 Query: 64 --IPENFTVSWDYSLCKRAIDENCFFSDEV---PDRWGDCIAARNLG-ITTFLSTPIHLP 117 + ++ + A + W + + G + S P+ Sbjct: 458 GLAVDGMPIAPGVASSGAAAATRQRVVVDNINEHPNWVNYRDLADHGCFSACWSEPVIGT 517 Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIA-QSYT 176 +G GT A E +L A L A I + + ++ L + Sbjct: 518 NGQLLGTFTAYYPSPTSPHEDYLGLLLQAAQLTALVI-------ERQNSSQDLERSLATF 570 Score = 54.7 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 49/174 (28%), Gaps = 27/174 (15%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 D +I R + + A+E L+ R + D + D E+RL A Sbjct: 255 DALIDRQALARAREAMLDETARN-ERYQRALLDNFPFLVWLKDTESRLLTANRAMAKAAG 313 Query: 63 YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY 122 ++ D L + D +A + PI + DG Sbjct: 314 --SDSVIGKTDRELWP---------PELASAYRADDLAVMASRQNKIVVEPIIV-DGQ-- 359 Query: 123 GTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANA--ALIAQS 174 W E + + G + + + + + A L Q+ Sbjct: 360 ----------TVWHETYKAPVIADDGTLLGTVGFARDISERKRAEEAMQLRNQA 403 Score = 47.4 bits (112), Expect = 7e-04, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 48/210 (22%), Gaps = 44/210 (20%) Query: 11 QSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTV 70 + + Q+ + + L + D L + R + + Sbjct: 551 ALVIERQNSSQDLERSLATFRGIFDSIGEALFIQGEDRRFLDVNTSAEQMFG-------- 602 Query: 71 SWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASS 130 RA + D A T TP + TL +S+ Sbjct: 603 ------LSRASLIGQTHESLIAPGMLDLEAIDQAISTALAGTP------QAFETLARSST 650 Query: 131 EKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFE 190 E+ E F G I + + + A L D Sbjct: 651 ERIFPIEVRLHTASYF-GRPVL-IASAVDISERKNAELRLE--VEHD------------- 693 Query: 191 NLTTLFSLA-RHLNHKIMIA-----FIDLD 214 L + + + F DLD Sbjct: 694 -LAQALASGMQRDEVLGALLKAIQRFPDLD 722 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 23/172 (13%), Positives = 45/172 (26%), Gaps = 26/172 (15%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 +++ + SQ+L + + E R+L E L + D + ++ +D R+ H A Sbjct: 833 EKLSGQFSQALHRLAAQEEA-RRLQENLSGLFDTLTDFIFILDQAGRILHYNRAVAEDLG 891 Query: 63 YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY 122 Y + + + + G PI G Sbjct: 892 YGQNTLKGKTIAA----------VHPENLRQIAEEVTVDIISGRRYSCPLPILCASGE-- 939 Query: 123 GTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 + W G A I + + A + Sbjct: 940 QIMVETRVVNGYW-----------DGQPAL-IGISQDISERLMAEER-QQLA 978 >UniRef50_C0N5T0 NMT1/THI5 like family n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N5T0_9GAMM Length = 1410 Score = 355 bits (912), Expect = 1e-96, Method: Composition-based stats. Identities = 76/331 (22%), Positives = 133/331 (40%), Gaps = 29/331 (8%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 + +++ + E ++ M V + + D + L + A + Y E Sbjct: 716 ILYDISERKKAEERLK----MSGRVFNQAHEGILITDAKGLLVDVNPAFSEITGYSREEV 771 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + + S+ + FF + W G + G + Sbjct: 772 -IGKNPSILQSDKHSRVFF----QEMWTSLE-----------------EKGHWQGEIWNL 809 Query: 129 SSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + ++E L G Y+ + + Q +E AL ++ D LT LPNR Sbjct: 810 KKNGQLFAELLTISTLVDERGETLHYLGLFSDITQSKEQQHALELMAHYDMLTQLPNRTL 869 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + + ++ + + + F+DLD FK +NDR+GH+ GD LI+V +R+ + + Sbjct: 870 FADRFHQAIAHSKRNHSLLAVVFLDLDGFKPVNDRYGHDVGDQLLIEVAQRIKASIRQDD 929 Query: 248 VIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 RLGGDEF+++ + + D L RI+ I Y L + + ASLGI + Sbjct: 930 TASRLGGDEFVLLLNDISSVDHCERLINRIRHAIELPYQLDEDTI-SLSASLGITIYPLD 988 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHP 337 DAD+ L AD AMYQ K ++ + Sbjct: 989 DADADTLLRHADQAMYQAKLAGRQRHHIFDA 1019 >UniRef50_C5V7A4 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Gallionellaceae RepID=C5V7A4_9PROT Length = 1013 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 74/348 (21%), Positives = 128/348 (36%), Gaps = 40/348 (11%) Query: 1 MSDQI-----IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMF 55 + D + ++ + + Q +ES +R E + D + + Sbjct: 432 LHDSANNVTGLIGLAADITERQKVESELRIAAAAFE-----AQEGMLITDRHNVIMRVNQ 486 Query: 56 ARNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIH 115 A S Y+ E + + + F+ + Sbjct: 487 AFTSITGYLAEEV-LGKNPCFLASGRHDAGFY-------------------QSMWEG--L 524 Query: 116 LPDGSFYGTLCAASSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 G + G + + + E ++ +A Y+ + + A + + + Sbjct: 525 NEKGKWEGEVWNRRKDGEIYPEYLLISAVKDIKNEVANYVATFRDITANKAAESEIKKLA 584 Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 + D LT LPNRR + + L + + + + FIDLDNFK +ND GH+ GD L Q Sbjct: 585 FYDPLTLLPNRRLLTDRLNHALASSARNRNIGALLFIDLDNFKTLNDTLGHDMGDALLKQ 644 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN------ADISSLRERIQQQIRGEYHLGD 288 V RL + + + + RLGGDEF+V+ N + E+I + Y L Sbjct: 645 VALRLKSCIREDDTLARLGGDEFVVILENLSELAMDAATKAELIGEKILAALNQVYPLAS 704 Query: 289 VDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAH 336 + Y+ AS+G+ D + ADIAMYQ KK + T Sbjct: 705 QE-YHGAASIGVTLFAGHALSIDELMKQADIAMYQSKKSGRNTLRFFD 751 Score = 42.0 bits (98), Expect = 0.036, Method: Composition-based stats. Identities = 18/170 (10%), Positives = 51/170 (30%), Gaps = 27/170 (15%) Query: 9 VSQSLAKEQSLESLV-------RQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQK 61 + +S+ + + E + + ++ + + D + + V+ +++ + + Sbjct: 311 IVESIHERKMAEMALALSNQKHDEERKLFQTILDNLPLGMWMLGVDGKIKFVNETFCNAL 370 Query: 62 MYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSF 121 +F + YS +D+ + C +T + DG Sbjct: 371 GIAAHDFFDAGHYSDLL-----PLSIADKCKESDRACFMQGEPHYSTEW---LPFTDG-- 420 Query: 122 YGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 + E L A + I A + + ++ + L Sbjct: 421 ----------RAHLLEMTRVRLHDSANNVTGLIGLAADITERQKVESELR 460 >UniRef50_Q21R50 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Rhodoferax ferrireducens T118 RepID=Q21R50_RHOFD Length = 1052 Score = 354 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 67/347 (19%), Positives = 137/347 (39%), Gaps = 36/347 (10%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 +Q + V + + + E+ +R + + + D + + + A ++ Sbjct: 476 EQGLVGVIADITQRRQTEAELR-----IAAIAFESEQGMAITDPQGVMLRVNRAFSAITG 530 Query: 63 YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY 122 Y V + L + F++ + + +G++ Sbjct: 531 YSAPE-AVGQNPRLLSSGRHDAAFYA-------------------AMWDSLVR--EGAWQ 568 Query: 123 GTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTG 181 G + + E ++ AG Y+ + + A + + ++ D+LTG Sbjct: 569 GEIWNRRKNGEVFPEWLTISAVKDPAGQATHYVATFTDLSTRKSAEDQIKSLAFYDTLTG 628 Query: 182 LPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNT 241 LPNRR + + L + + + +IDLD+FK +N+ +GH+ GD L +V +RL+ Sbjct: 629 LPNRRLLLDRLKQALASGARHRRQGALLYIDLDDFKTLNNTYGHDVGDQLLQEVAQRLSH 688 Query: 242 LQQNGEVIGRLGGDEFLVVSLNNEN------ADISSLRERIQQQIRGEYHLGDVDLYYPG 295 + G+ + R GGD F+V+ + + E+I+ + Y + D + Sbjct: 689 YLRAGDTVARPGGDSFVVLLEALSTNSVEAATEAENTGEKIRLALSQPYQIADH-AHRST 747 Query: 296 ASLGIVEVDP-ETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 AS+G+ D + D L A++AMYQ K + T P + + Sbjct: 748 ASIGVTLFDDRQQEGIDEPLKRAELAMYQAKTAGRNTLRFFDPQMQT 794 Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 42/154 (27%), Gaps = 20/154 (12%) Query: 18 SLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLC 77 L + Q +L+ + D S + VD + R+ + Y +L Sbjct: 364 RLLGTLGQREALLQQILDTSSVAIFLVDRQGRITKANQRMATLFGYPLHELQGMEYVALV 423 Query: 78 KRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSE 137 A E + +A + + + ++ + + W Sbjct: 424 HPAQRETG---------RKNMLALLDSALQSVDLERLYW-----------RADQTEFWGH 463 Query: 138 RAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 Q G + A + Q R+ A L Sbjct: 464 LTGQRFVDGNGEEQGLVGVIADITQRRQTEAELR 497 >UniRef50_B4RZW0 GGDEF domain-containing PAS signal transduction protein n=3 Tax=Alteromonadales RepID=B4RZW0_ALTMD Length = 794 Score = 354 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 80/345 (23%), Positives = 139/345 (40%), Gaps = 17/345 (4%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 + + + + + +SL S++ ++ +E + + + E A + Y Sbjct: 201 NVRSAILEKVVNAESLHSVLFDIVNAIESEYPEKICSILLL--EDGKLTKGAAPSLPDFY 258 Query: 64 --IPENFTVSWDYSLCK--RAIDENCFFSDE-VPDRWGDCIA-ARNLGITTFLSTPIHLP 117 + + C A + D W D A G+ S PI Sbjct: 259 NDAIDGVEIGEGVGACGNTAATNAPTIVEDISTHTFWHDYKEIAARAGVAACWSQPIRGA 318 Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 GT K + +++ FA + + I + A+ + Q+ D Sbjct: 319 STEVIGTFAIYHRYKAVPTPEEVVLIEQFAHIASIAI-------ERERASELIWKQANFD 371 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 +LTGLPNR + ++L A ++ +AF+DLDNFK IND GH+ GD LI+ E Sbjct: 372 TLTGLPNRNLMLDHLQLALKTADREGDRVAVAFLDLDNFKDINDTLGHDVGDQLLIECAE 431 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGA 296 R+ + + + RLGGDEF+V+ + E + I + ++I I Y + V+ + A Sbjct: 432 RIKQCLRANDTVSRLGGDEFVVILNSIETLSSIDIVVQKILDVILKPYLIN-VERVHTSA 490 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 SLG+ + D L AD AMY K + + + + Sbjct: 491 SLGVTLYPDDARDIKGLLKNADQAMYGAKDLGKNSYKYYTQDMQA 535 >UniRef50_Q1JY96 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JY96_DESAC Length = 904 Score = 354 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 73/340 (21%), Positives = 134/340 (39%), Gaps = 30/340 (8%) Query: 4 QIIARVSQSL-AKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 I+ L + + E + V D + +++ ++ + A + Sbjct: 334 NILGHSIVDLDHQRKESEKQLLLSS----SVFDNAVEGIVITNLDGIIEQVNPACEAMSG 389 Query: 63 YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY 122 Y + R + S W I +G + Sbjct: 390 YRLKELIGENP-----RIFRSDHHNSAFYQQMWQSLI-----------------EEGRWE 427 Query: 123 GTLCAASSEKRQWS-ERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTG 181 G + + + AG+ + Y+ + +++ + L Q+Y D+LT Sbjct: 428 GEVWNRRKNGEVYPLNVSISRCTNSAGIPSHYVAIFHDISEIKRSEEKLQHQAYHDALTN 487 Query: 182 LPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNT 241 LPNR+ + L+ + AR K+ + ++D+DNFK IND GH+ GD L Q+ ERL + Sbjct: 488 LPNRKLFHDRLSVAVAHARQHKTKLAVIYLDIDNFKYINDSLGHHYGDKLLQQISERLLS 547 Query: 242 LQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGI 300 + + RLGGDEF+++ + DI+ L RI +Q+ + L D Y S+G+ Sbjct: 548 CTRQEDTTARLGGDEFIILMPEIEDPHDITVLCRRILKQLELPHALSGRD-YTVNVSMGV 606 Query: 301 VEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + + + ADIAMY+ K+ + + A+ Sbjct: 607 TVFPDDADTPEDLIKNADIAMYRAKEAGKNGYQLFTAAMQ 646 >UniRef50_A1K3A1 GGEF/EAL/PAS/PAC-domain containing protein n=1 Tax=Azoarcus sp. BH72 RepID=A1K3A1_AZOSB Length = 818 Score = 354 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 69/334 (20%), Positives = 127/334 (38%), Gaps = 28/334 (8%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 Q + + E +RQ V + + D + R+ + A Y PE Sbjct: 250 GTVQDITDRKLAEQSLRQ----AATVFENTGEGVIIADAKNRIIAVNRAFTVITGYGPEE 305 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 + +L + + ++ G + G + Sbjct: 306 V-IGRSPNLLRSGRHDAAYYD-------------------AMW--RGVHEAGHWQGEIWN 343 Query: 128 ASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 + E V++ G ++ Y+ + + +++E A L ++ D+LT LPNR Sbjct: 344 RRKNGEIFPELLTLSVVRDHNGKVSHYVGVFSDISRMKETEARLQRLAHYDALTDLPNRV 403 Query: 187 AIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNG 246 + L + + + F+D+D FK +ND GH GD LI++ RL + + Sbjct: 404 LLNLRLAHGVERVQRSGEMLAVLFLDIDRFKNVNDSLGHPVGDELLIEIARRLRSRIRAE 463 Query: 247 EVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDP 305 + + RLGGDEF+++ D++ + I + + L + GAS+GI Sbjct: 464 DTLARLGGDEFVILLDRIRSANDVADFAQEIIDLLNQSFQLASGQEVFVGASIGISLYPL 523 Query: 306 ETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 +T DA + AD A+YQ K+ + L Sbjct: 524 DTDDATQLISNADAALYQAKEAGRNVYRFYTADL 557 >UniRef50_A6T0F0 Sensory box/GGDEF family protein n=2 Tax=Oxalobacteraceae RepID=A6T0F0_JANMA Length = 699 Score = 354 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 65/338 (19%), Positives = 131/338 (38%), Gaps = 21/338 (6%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 I+ Q + + + + +R+ + + + + + A Y Sbjct: 125 ILEGFIQDVTERKQADEALREAERRYRSIFENAIEGIYQSTPSDGYLAVNPALARMYGYD 184 Query: 65 PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGT 124 +S R ID + + + +A G+ T + +H +G Sbjct: 185 SPQALIST-----LRDIDNQVYVDPQRRLEFKRLMA--KHGVVTNFESRVHRRNGEVI-- 235 Query: 125 LCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 W + + G + + + + + A + Q+ D+LTGLPN Sbjct: 236 ----------WISENARSVYNSDGTLLFFEGTVEAITERKLHEAEIQFQATHDALTGLPN 285 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R +++ + + IAF+DLD FK IND GH GD L +RL + + Sbjct: 286 RTLLYDRMQQAVLHSERYGKLTAIAFLDLDQFKFINDSLGHQVGDELLKITAQRLTSCLR 345 Query: 245 NGEVIGRLGGDEFLVVSLNNENADI-SSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 + + R GGDEF+++ + N + + +R+ ++ + D++ + S+G+ Sbjct: 346 ESDTVARQGGDEFVLLLTDQPNEEAITHTMQRVLHEVSQPWKANDLE-FQITCSIGLTLC 404 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + DA++ L AD AMY+ K+ + ++S Sbjct: 405 PDDGRDAETLLKNADSAMYKAKELGRNNFQYFSAEMNS 442 >UniRef50_Q087W4 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q087W4_SHEFN Length = 1144 Score = 354 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 72/331 (21%), Positives = 134/331 (40%), Gaps = 29/331 (8%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVS 71 L+ ++ E L + +E + +++++++++ A Y + Sbjct: 568 DLSAQKKAEEQALTLSQAIEQ----SPISMILTNIDSKIEYVNSAFEKISGYAASEV-IG 622 Query: 72 WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 S+ K + + W ++ G L Sbjct: 623 QSASMLKSGLTPKSLY----KQLWDA-----------------ISTGHAWQGELQNRKKN 661 Query: 132 KRQ-WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFE 190 W + AG+ Y+ + V Q ++ ++ Q++ DSLTGLPNR + Sbjct: 662 GDIFWEHAHIAPIFDNAGVTKHYLALKQDVTQYKQQEEKILHQAHYDSLTGLPNRLLSLD 721 Query: 191 NLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIG 250 L+ + A + + + F+DLD+FK +ND GH+ GD LIQ RL + +V+G Sbjct: 722 RLSQMLKDAHRAKNNVAVLFLDLDDFKKVNDTMGHSVGDELLIQAAVRLKNTIRESDVVG 781 Query: 251 RLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTD 309 RLGGDEF+++ N E ++ + ++ +Q + L + +L S+GI ++ D Sbjct: 782 RLGGDEFIIILSNINEPIEVEIIASKLLEQFYQPFRLENREL-VSTISIGIALYPLDSED 840 Query: 310 ADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 L AD AMY K + T ++ Sbjct: 841 PKELLRQADSAMYHSKDRGRNTYNFYTHQMN 871 Score = 43.5 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 16/152 (10%), Positives = 36/152 (23%), Gaps = 23/152 (15%) Query: 22 LVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAI 81 L+ +L+ + D + + A + PE+ DY L Sbjct: 202 LLETEKNLLQSIIDGIPDIIFYKSADGVYLGCNKAFSEALKLNPEDIKHKTDYDL----F 257 Query: 82 DENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEK-RQWSERAE 140 D S DR+ + + + + + + + Sbjct: 258 DRQQADSFIKADRF------------------VLQENQPWMDEEWITTPDGIAHIFKTHK 299 Query: 141 QVLQLFAGLIAQYIQKEALVEQLREANAALIA 172 +G I + + + L Sbjct: 300 TPFVDSSGDIQGIVGVSRDMADRKLIEEQLRR 331 >UniRef50_C6P6N2 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P6N2_9PROT Length = 1043 Score = 354 bits (909), Expect = 3e-96, Method: Composition-based stats. Identities = 68/339 (20%), Positives = 134/339 (39%), Gaps = 34/339 (10%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 V + +++ + + ++ + V + + D + R+ + A Y E+ Sbjct: 472 VFEDISERRQKDEALK----LASSVYQSSNDGILVTDEKNRILDVNPAFTRITGYTLEDV 527 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 D + + + F+ W L DG + G + Sbjct: 528 R-GKDPGIFQSGKHDAQFY----QQMWQS-----------------ILDDGHWQGEIWDL 565 Query: 129 SSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 ++ + V++ G I +++ + + + + + + + Q+ D+LT LPNRR Sbjct: 566 KKNGELHAKWLSISVIRRADGSIYRHVGQFSDITEKKRKDELIWEQANFDTLTNLPNRRL 625 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + S + +DLD FK +ND FGH+ GD LI+V RL + + + Sbjct: 626 FADRFRQAISAGARSGRYGALLSLDLDQFKRLNDTFGHSMGDKLLIEVARRLTSCVREED 685 Query: 248 VIGRLGGDEFLVVSLNNENAD------ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIV 301 + R+GGDEFLV+ + + E+I+ ++ Y L + ++ +S+GIV Sbjct: 686 TVARMGGDEFLVILNGLGSEQNEAAIRAELIAEKIRNELCRPYQLDKTE-HHSSSSIGIV 744 Query: 302 EVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + D + L D AMYQ K + ++ Sbjct: 745 LFRGHSDDPERLLAHVDTAMYQSKAKGRNAICFFDSSMQ 783 Score = 51.6 bits (123), Expect = 4e-05, Method: Composition-based stats. Identities = 17/155 (10%), Positives = 45/155 (29%), Gaps = 16/155 (10%) Query: 17 QSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSL 76 + S V + L ++ S + +D + + A Y PE ++ Sbjct: 349 RQSRSAVAASEQRLRLILGSVSNGIWGLDKDGNTTFVNAAAADMLGYTPEELFDKPMHAT 408 Query: 77 CKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWS 136 + + + +R + + + DGS + Sbjct: 409 IHHSYPDGTHYP---AERCPMHATLVDGKPRMGIDEVLWRKDGS------------ELYV 453 Query: 137 ERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 + + ++ G + + + + R+ + AL Sbjct: 454 DYSSHPIR-SHGEMEGAVVVFEDISERRQKDEALK 487 >UniRef50_C6MMM5 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Geobacter sp. M18 RepID=C6MMM5_9DELT Length = 1097 Score = 353 bits (908), Expect = 3e-96, Method: Composition-based stats. Identities = 77/337 (22%), Positives = 129/337 (38%), Gaps = 32/337 (9%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDV---EARLQHIMFARNSQKMYIP 65 + +A+ + E +RQ + D S + D + + ++ A Y Sbjct: 387 LETEIAEHRDAEEALRQ----RQRAIDSSSNGIMITDALELDHPIIYVNPAFERITGYAA 442 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 LC GD I L L +G L Sbjct: 443 SEVLGRNPRLLCS-----------------GDREQLGLEVIRVALCE---LREGH--AEL 480 Query: 126 CAASSEKR-QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 + W+ + + AG + Y+ + + + L QS D LTGLPN Sbjct: 481 RNYRKDGSLFWNALSVSPVLNAAGEVTNYVGIVNDITERKRYEEQLEYQSNHDGLTGLPN 540 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R + + + + A + + FIDLD+FK IND GH+ GD L RL+ + Sbjct: 541 RNLLGDRIGQALTYAERYQRQTAVFFIDLDHFKFINDSLGHDMGDKLLQIAARRLSECVR 600 Query: 245 NGEVIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 + + + R GGDEF++V + + D + + +IQ + Y +G+ +L S GI Sbjct: 601 SIDTVARHGGDEFVIVLSDLAVSEDAAKVARKIQDAVCRPYQIGEHEL-VVSCSTGISLY 659 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + +DA L AD+AMY+ K+ + L+ Sbjct: 660 PKDGSDAQVLLKNADVAMYRAKQCGRNNFQFYTGDLN 696 >UniRef50_B2JN77 Diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(S) n=2 Tax=Burkholderia RepID=B2JN77_BURP8 Length = 915 Score = 353 bits (907), Expect = 4e-96, Method: Composition-based stats. Identities = 69/337 (20%), Positives = 130/337 (38%), Gaps = 30/337 (8%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVS 71 LA + + E + + V + D + + + A Y ++ + Sbjct: 334 RLASKMTAEVRESEAELRIAAVAFDSLEGMMVTDADGTILRVNSAFTKCTGYTADDV-IG 392 Query: 72 WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 + L + FF D T G + G + Sbjct: 393 RNPRLLSSGRHDAAFFRD-------------------MWET--IHRVGGWQGEIWDRRKN 431 Query: 132 KRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFE 190 + + ++ G + Y+ + + + A + ++ D+LT LPNR + + Sbjct: 432 GEIYPKWLTITAVKAVDGNVTHYVGTHYDITERKLAEEQIKELAFFDALTHLPNRTLLRD 491 Query: 191 NLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIG 250 L + +L+ + + F+DLDNFK +ND GH+ GDL L QV RL + G+ + Sbjct: 492 RLKQVIALSAQNHTHGALLFVDLDNFKTLNDTLGHDKGDLLLGQVAVRLLGSVREGDTVA 551 Query: 251 RLGGDEFLVVSLNNEN------ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVD 304 R+GGDEF++V + ++ E++ + Y+L + + AS+G Sbjct: 552 RMGGDEFVIVLSDLSRNRDEAASETEGAAEKVLTALSRPYYLAGTE-FRTTASIGATLFT 610 Query: 305 PETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 T D L +D+AMY+ K+ + PA+ + Sbjct: 611 GHETSIDELLKQSDLAMYKSKESGRNAICFFDPAMQT 647 >UniRef50_B8GLY5 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GLY5_THISH Length = 1082 Score = 353 bits (906), Expect = 6e-96, Method: Composition-based stats. Identities = 73/331 (22%), Positives = 125/331 (37%), Gaps = 29/331 (8%) Query: 11 QSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTV 70 + + + +E +R + V D + + D R+ + A Y E V Sbjct: 510 RDITGRKRIEESLR----LHAQVFDTATEGVMIADARGRILSVNRAFEQVTGYSAEEV-V 564 Query: 71 SWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASS 130 + S+ + F+ T +G + G + Sbjct: 565 GRNPSILSSGRQDKAFY-------------------RRMWDT--IKGEGIWSGEIWNRRK 603 Query: 131 EKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIF 189 + + E + G + ++ + + + + + + D LTGL NR Sbjct: 604 DGEIYPEWLTISSIAGPNGEASHFVAVFSDITAQKRSEQEIDFLANHDPLTGLANRNLFE 663 Query: 190 ENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVI 249 + L S+A + + +DLD F+LIND GH GD L + G RL ++ + + Sbjct: 664 DRLAHAISMAGRNGQHVGLLLVDLDRFRLINDGMGHGPGDALLRETGRRLGHCVRDSDTV 723 Query: 250 GRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETT 308 RLGGDEF ++ + AD ERI + +R LG +L+ S+GI + T Sbjct: 724 ARLGGDEFGIILEGLADAADAGMQAERILEAMRAPLRLGGQELF-CTVSIGIAVFPADGT 782 Query: 309 DADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 DA + L AD AM K+ + AL Sbjct: 783 DAATLLRHADTAMALAKREGRNNFQFYTHAL 813 Score = 53.9 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 17/179 (9%), Positives = 46/179 (25%), Gaps = 16/179 (8%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 + + + + + + E+ V V + + +D + R++ A + Sbjct: 370 NVANRSLQREVEQRRQAEAEVLAQSRRQAQVLEAVDEAIFGLDADCRVEFANPAAEALAG 429 Query: 63 YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY 122 + + D+ + D + + I ++ DG Sbjct: 430 CSIGQMRGQRLSGVLQIRDDQGRSAWEPDGDCLAEDPM--PVSIRRAFDQTLYHRDGRVL 487 Query: 123 GTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSY-TDSLT 180 A L G + + + + +L + D+ T Sbjct: 488 VVDYAFRPI-------------LEGGQVRGGVFSCRDITGRKRIEESLRLHAQVFDTAT 533 >UniRef50_C7RS23 Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor n=2 Tax=Betaproteobacteria RepID=C7RS23_9PROT Length = 439 Score = 352 bits (905), Expect = 7e-96, Method: Composition-based stats. Identities = 72/339 (21%), Positives = 128/339 (37%), Gaps = 30/339 (8%) Query: 2 SDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQK 61 D + + +L Q LES +R + E + + + DV A ++ A + Sbjct: 121 HDALGRAIRHALV-RQRLESRLR----LFEAALNSAANGIVITDVNAAIEWANPAFTAMT 175 Query: 62 MYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSF 121 + K + F+ +T + + Sbjct: 176 GRTLAEAVGRTPGEVLKSGRQDAAFY-------------------QRMWATILAGQ--VW 214 Query: 122 YGTLCAASSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLT 180 G L + + E + G I ++ + + + + + ++ D LT Sbjct: 215 SGELVNRRKDGSVYDEALTISPVTDMNGRIQHFVAIKQDISERKVTEERVQHLAHHDQLT 274 Query: 181 GLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLN 240 LPNR + + L + AR + + F+DLD FK +ND GH+ GDL L +V RL Sbjct: 275 DLPNRALLSDRLAQAVAQARRDRGTLALMFLDLDQFKPVNDTLGHDVGDLLLKEVALRLQ 334 Query: 241 TLQ-QNGEVIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASL 298 + + + + RLGGDEF+++ + AD + +I ++ + +G ++ ASL Sbjct: 335 SCVPRESDTVSRLGGDEFVILLAQMDKAADAVVVAGKILAALQRPFAIGPHEIGI-SASL 393 Query: 299 GIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHP 337 GI D + L AD AMY KK + Sbjct: 394 GIAVYPQHGEDVNRLLKNADTAMYHAKKAGRNCYRFFRA 432 >UniRef50_B1Y6A9 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y6A9_LEPCP Length = 898 Score = 352 bits (905), Expect = 8e-96, Method: Composition-based stats. Identities = 82/335 (24%), Positives = 131/335 (39%), Gaps = 29/335 (8%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 Q + + + E +R + V D + D R++ + A + Y E Sbjct: 328 GTVQDITERRQAEDEMR----LAASVFDNSLNAILIADANGRIRKVNRAFTAITGYTAEE 383 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 V L K + F+ + W + + G + G L Sbjct: 384 -AVGDTPRLMKSGLHSPGFY----GEMWAE--------LQAC---------GKWDGELMN 421 Query: 128 ASSEKRQWS-ERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 + R S + + AG +A YI + + + + + +Y D LTGLPNR Sbjct: 422 QCKDGRIISVRESIAAVHDPAGAVAYYIGIFHDITEQKASAQRIHQLAYYDVLTGLPNRA 481 Query: 187 AIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNG 246 + + + A ++ + F+DLD FK IND GH GD L V +RL ++ Sbjct: 482 LLMDRCQHELARAMRDGKRLAVLFLDLDRFKHINDSLGHPVGDGLLRAVAQRLQGTLRDS 541 Query: 247 EVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDP 305 + I RLGGDEF+V+ + E A + RI R + L + L GAS+GI Sbjct: 542 DTIARLGGDEFIVLLEHVETSAGVELAARRILDAFRDPFQLEEHRLSV-GASVGISLFPD 600 Query: 306 ETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 +D S AD+A+YQ K + P + Sbjct: 601 HASDITSLFKYADLALYQAKAAGRGDFRFFEPRFN 635 >UniRef50_Q2RPL3 Diguanylate cyclase/phosphodiesterase n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RPL3_RHORT Length = 855 Score = 352 bits (904), Expect = 1e-95, Method: Composition-based stats. Identities = 68/335 (20%), Positives = 132/335 (39%), Gaps = 29/335 (8%) Query: 7 ARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPE 66 + + ++ + +R L + V + + ++ + ++ + A + + + Sbjct: 271 EGTVEDITAQRQSQETMRLLGK----VFTSIAEGIVLLERDLTVRTVNPAFEAMTGLLRQ 326 Query: 67 NFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLC 126 + L + EN F + + G + G + Sbjct: 327 DME-GRPARLFASGLHENDFLATVAAE---------------------VDRAGLWRGEIW 364 Query: 127 AASSEKRQW-SERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNR 185 E + E ++ AG Y+ + + + + Q+ D LT LPNR Sbjct: 365 GERREGPPYSGEMTVTAVRTRAGETTHYVAAITDITKRKRDEEHIRFQANFDMLTHLPNR 424 Query: 186 RAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQN 245 I + L A+ ++ + F+DLD FK IND +GH++GD L RL + Sbjct: 425 HLIMDRLEQAMHQAQRTGRQVCVMFLDLDRFKQINDSYGHSAGDEVLKLTARRLRNCVRI 484 Query: 246 GEVIGRLGGDEFLVVSLNNENADI-SSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVD 304 + +GRLGGDEF+V+ N E+ + + E+I + + +G +++ S+GI Sbjct: 485 SDSVGRLGGDEFIVILSNVEDQHAGAYIAEKILYSLSEPFPIGGTEVFCI-PSVGITYFP 543 Query: 305 PETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 A L AD+AMY K+ ++ + P + Sbjct: 544 DHGETAPDLLRNADVAMYHAKQGGERRYAIFTPDM 578 Score = 62.0 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 12/173 (6%), Positives = 42/173 (24%), Gaps = 25/173 (14%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 ++ +++ + + + E+ +R + + + + + + A Y Sbjct: 140 PLLVVITRDMTAQVAAENALRAAEGKYRAIFENAVEGIYQSTPDGTYLDVNPALARIYGY 199 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY- 122 ++ F+D + D G + G Sbjct: 200 ASPAELIA--------------HFTDIASQLYVD-------GTKRGEFQRLMRETGEVRD 238 Query: 123 --GTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQ 173 + W + ++ + Y + R++ + Sbjct: 239 FTAEVW-RCDGHTIWITENARCVRGPDNEVLYYEGTVEDITAQRQSQETMRLL 290 >UniRef50_Q2W523 FOG: PAS/PAC domain n=5 Tax=Magnetospirillum RepID=Q2W523_MAGSA Length = 642 Score = 352 bits (903), Expect = 1e-95, Method: Composition-based stats. Identities = 68/325 (20%), Positives = 128/325 (39%), Gaps = 29/325 (8%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVS 71 + + ++ E + ++LE VT+ + D + R+ + A + Y E Sbjct: 337 DITERKAAEQQILLAAKVLETVTE----AVVITDADNRIIFVNPAFTTITEYTKEEVR-G 391 Query: 72 WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 + S + F+ W + G + G + Sbjct: 392 KNPSFLSSGRHDPEFY----AGLWQ-----------------VLSVSGHWAGEIWNRRKS 430 Query: 132 KRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFE 190 ++E + L+ +G I ++ + + +E + Q+ D+LTGLPNR + Sbjct: 431 GAFYAEWLSINALRDVSGAITHFVAVFSDITHRKEDEERIWRQANYDALTGLPNRSLFVD 490 Query: 191 NLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIG 250 L ++ + + F+DLD FK +ND GH +GD+ L Q RL+ + + + Sbjct: 491 RLNQAVRQSKRDKKRFALMFLDLDGFKAVNDTLGHAAGDVLLQQTAARLHQCMRATDTLA 550 Query: 251 RLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTD 309 RL GDEF+V+ + D + + +I + Y L + G S+GI + D Sbjct: 551 RLAGDEFVVILEGVHDRDNPALVAGKILATLSKPYDLEVGTAHVRG-SIGIALYPEDAAD 609 Query: 310 ADSALHAADIAMYQEKKHKQKTPFV 334 + + AD AMY K+ + + Sbjct: 610 GPALIRRADTAMYAVKRRGKNSFLF 634 >UniRef50_Q5P4Q9 Putative uncharacterized protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P4Q9_AZOSE Length = 813 Score = 352 bits (903), Expect = 1e-95, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 124/332 (37%), Gaps = 22/332 (6%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVS 71 + + + ++ + + V + + D+ R+ + A + Sbjct: 238 DITARKRDKERLQ----LADKVFENSREAIVITDLGHRIVSVNPAYTEITGIAATAAQGT 293 Query: 72 WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 PD T + I GS+ G Sbjct: 294 CFRPGSDDGDSGEEGEGAGGPDS------------RTVWA--IVGEHGSWSGETTGVRCG 339 Query: 132 KRQWSE-RAEQVLQL-FAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIF 189 +++ ++ I +I + + + A A + +Y D+LTGL NR ++ Sbjct: 340 GQRYPRTLMINGVRDPETREITHFIAIFSDITARKRAEADIQHLAYHDTLTGLANRFSLT 399 Query: 190 ENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVI 249 L + AR ++ + F+DLD FK IND GH GD L QV RL + + + Sbjct: 400 ARLQLSVAEARRNGQRLAVMFLDLDRFKHINDSLGHPVGDELLKQVARRLRDAVRETDTV 459 Query: 250 GRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETT 308 RLGGDEF+VV A D++ + ++ Q+ Y + +L+ AS+GI ++ Sbjct: 460 ARLGGDEFVVVLQGIGGAHDVTHVAAKLLAQLSAPYCVDTTELH-TTASIGISLFPDDSA 518 Query: 309 DADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 D + + AD AMY K + ++ Sbjct: 519 DPAALMRNADTAMYHAKAAGRAKFQFYTDEMN 550 >UniRef50_Q2BJI5 Regulatory component of sensory transduction system n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJI5_9GAMM Length = 872 Score = 352 bits (903), Expect = 1e-95, Method: Composition-based stats. Identities = 80/344 (23%), Positives = 138/344 (40%), Gaps = 5/344 (1%) Query: 1 MSDQIIARVSQSLAKEQSLESLV-RQLLEMLEMVTDMESTYLTKVDVEARLQHIMFA-RN 58 M D+I +R L + LE V ++ ++ E+ ++ ++ E L+ + A Sbjct: 264 MQDKIASREKALLKAREELELRVEQRTNQLQEINFQLQQEIDVRLRAEENLRVLSQAVSQ 323 Query: 59 SQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPD 118 S I +Y + + + + + Sbjct: 324 SPISIIIAGVDGGVEYVNQAFTDCSGFSVEEIKGNDFTFLNNLDSQPELSKELWDAINNG 383 Query: 119 GSFYGTLCAASSEK-RQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTD 177 + G L R W + G I Y+ + + + +E +I Q++ D Sbjct: 384 QEWRGELANLRKNGQRYWEYTHISPVTDETGQITHYLIIKNDITERKEQEQKIIHQAHFD 443 Query: 178 SLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGE 237 SLT LPNR + L A N + + FIDLD FK +ND GH+ GD LI + Sbjct: 444 SLTELPNRSLAMDRLAQGVIKASRNNDVLALMFIDLDGFKNVNDSLGHDIGDQLLIHASK 503 Query: 238 RLNTLQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGA 296 RL+ +N + + RLGGDEFL++ D + +I++ +++G +L Sbjct: 504 RLSDSVRNTDTVARLGGDEFLIIMEGLVSRRDCLPVLNKIKESFGAPFNIGSNELKV-TP 562 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 S+G+ + D D L AD+AMYQ K+ + T + +H Sbjct: 563 SIGLSLFPDDGQDGDVLLRNADLAMYQAKEAGRNTHHFFNQEMH 606 >UniRef50_C7RJ77 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RJ77_9PROT Length = 1399 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 68/309 (22%), Positives = 117/309 (37%), Gaps = 23/309 (7%) Query: 32 MVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEV 91 V + + D + I A Y + + SL + F+ Sbjct: 854 KVFEQGGEGIAITDAACNIVMINQAFTRITGYSEVEV-LGRNPSLLASGRHDQAFY---- 908 Query: 92 PDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIA 151 W + G + G + + + E G Sbjct: 909 QSMWESIESL-----------------GHWQGEIWNRRKDGSVYPEWLLISRVDGDGAPT 951 Query: 152 QYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFI 211 YI + Q +EA A++ ++ D+LTGLPNR + E + + A + + F+ Sbjct: 952 HYIGTFIDITQHKEAEASIQRLAHFDALTGLPNRSLLEERVRHDLARAHRGREALALMFV 1011 Query: 212 DLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISS 271 DLD FK +ND GH GD LIQV ERL ++ + + RLGGDEF+VV + + + Sbjct: 1012 DLDRFKNVNDSLGHRVGDALLIQVAERLRRAVRDEDTVSRLGGDEFIVVLPSTDADGAAH 1071 Query: 272 LRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKT 331 + ++ + + Y + +L S GI + ++ +AD AMY+ K+ + Sbjct: 1072 VAAKLLEVMAPAYRIEQHEL-TCSLSAGIAMYPADGESFEALSMSADTAMYRAKQSGRNA 1130 Query: 332 PFVAHPALH 340 + Sbjct: 1131 YCFFTAEMQ 1139 Score = 60.5 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 44/161 (27%), Gaps = 16/161 (9%) Query: 10 SQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFT 69 S LA+ + +E +R+ + V + + D + + + Y Sbjct: 693 SALLAERRQVEQALRESEALKASVLASAACGIVATDPQGLITVFNPGAEAIFGYAAHEVV 752 Query: 70 VSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG-----T 124 +L D +R+LG + G Sbjct: 753 GKVTPTLW----------HDAEEIAAAAVALSRDLGCRVEAGFDALVARARCSGQVDERE 802 Query: 125 LCAASSEKRQWS-ERAEQVLQLFAGLIAQYIQKEALVEQLR 164 + R+ + A V++ G +A Y+ + + Sbjct: 803 TAGVRKDGRRITIRLAVTVMRDAQGALAGYLGTIVDITAQK 843 Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 62/174 (35%), Gaps = 8/174 (4%) Query: 2 SDQI--IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNS 59 S+Q+ ++ SQ + E + ++RQL + + A Q + N Sbjct: 538 SEQLVQLSAASQEINSELDIPVILRQL---IAAALKVTGAGGGAAARIAGGQMVFAEYNR 594 Query: 60 QKMYIPENFTVSWDYSLCKRAIDENCFF--SDEVPDRWGDCIAARNLGITTFLSTPIHLP 117 +P ++ S Y + R + F +D D W + +G L PI Sbjct: 595 GGQLLPVDYRFSPGYGVPGRVMQTRSFHLSNDAEHDPWVIPEIRQAIGFDCLLDMPIISR 654 Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 G G + + + ++L A A ++ AL+ + R+ AL Sbjct: 655 HGELLGCFEIHNK-PGGFGDGDVRLLHGLAASAAVALENSALLAERRQVEQALR 707 Score = 40.8 bits (95), Expect = 0.067, Method: Composition-based stats. Identities = 20/165 (12%), Positives = 49/165 (29%), Gaps = 26/165 (15%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 +++ +++ + E+ +R E ++V ++D+ + + M Sbjct: 397 LARDISERKRAEARLRMATEATQLVF-------WELDLLSDQLRYDTS-----MLQVLGL 444 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 D ++ D AA + P+ + Sbjct: 445 DHGEDPGSTGALME--LVHPDHRAALTESFRAAMAS------AEPVFSFEHQI-----VT 491 Query: 129 SSEKRQWSERAEQVL-QLFAGLIAQYIQKEALVEQLREANAALIA 172 S + W + +V + AG + + + A AAL+ Sbjct: 492 HSGEGVWLQTRGRVAQRDAAGRAVLAVGTAMNITDRKRAEAALLR 536 >UniRef50_C5V280 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V280_9PROT Length = 725 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 79/345 (22%), Positives = 127/345 (36%), Gaps = 35/345 (10%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 + + + + L K++ E + E + D + + + A Y Sbjct: 138 TLNSELDEMLHKQRETEQELLISATAFE-----AQDGIMITDSKGVILRVNQAFTDITGY 192 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 E R + +D W G + G Sbjct: 193 SSEEAVGQTP-----RLLKSGRHDADFYAAMWQCIKNT-----------------GQWSG 230 Query: 124 TLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGL 182 + + + ++ F G + Y+ + + + + + ++ D LT L Sbjct: 231 EIWDRRKNGEIYPKWLTITEVKSFDGSVVHYVSSQVDITARKASEDRIHNLAFYDPLTQL 290 Query: 183 PNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTL 242 PNRR + + L S + + + FIDLD FK IND GH+ GDL L QV ER T Sbjct: 291 PNRRLLLDRLRHSVSFSLRDGRHVALMFIDLDKFKKINDTLGHDIGDLLLKQVAERTLTC 350 Query: 243 QQNGEVIGRLGGDEFLVVSLNN------ENADISSLRERIQQQIRGEYHLGDVDLYYPGA 296 + + + RLGGDEF+V+ A + +I + Y L + Y GA Sbjct: 351 VRTCDTVARLGGDEFVVLLDGLAGNLHEAAAQAKQIGRKIIDTLNQSYDLAGHE-YQSGA 409 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 S+GI D A+ L ADIAMYQ KK + T P + + Sbjct: 410 SIGIALFDEHCQTAEDLLKQADIAMYQAKKAGRNTLRFFDPEMQA 454 >UniRef50_C5V2Q6 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V2Q6_9PROT Length = 564 Score = 351 bits (901), Expect = 2e-95, Method: Composition-based stats. Identities = 71/323 (21%), Positives = 134/323 (41%), Gaps = 6/323 (1%) Query: 18 SLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLC 77 L+ + + L + S L + RL ++ N+ + + + + D + Sbjct: 240 PLDERNQDEIGKLARTFNQMSESLYNSEKSMRLASSIYQSNADAIVVTDENNLIVDVNPA 299 Query: 78 KRAIDENCFFSDEVPDRWGDCIAARNLGITTFLST-PIHLPDGSFYGTLCAASSEKRQWS 136 I + DEV + + + I + + G + G + + ++ Sbjct: 300 FTRI--TGYTLDEVRGKNPRLMQSGQHDIQFYRKMWRAIIDQGHWQGEIWDKRRDGGLYA 357 Query: 137 -ERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTL 195 L+ G I +++ + + + + ++ + + Q+ D LT LPNRR + L Sbjct: 358 KSVNIIALRHQDGSIYRFVAQFSDITEKKQKDELIHWQANYDPLTNLPNRRLFQDRLNQA 417 Query: 196 FSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGD 255 LA + + FIDLD FK IND GH +GD+ L++V R+++ + + + RLGGD Sbjct: 418 IKLAHRTELPLALFFIDLDYFKEINDTLGHANGDVLLMEVARRISSCVREADTVARLGGD 477 Query: 256 EFLVVSLNNENA-DISSLRERIQQQIRGE-YHLGDVDLYYPGASLGIVEVDPETTDADSA 313 EF V+ +A I + + I ++ + + D Y+ AS+GI + D Sbjct: 478 EFTVILPELSDATQILRVAKNIVDKLSQPFFFVNDETGYHVSASIGIANYPQDAMDTKGL 537 Query: 314 LHAADIAMYQEKKHKQKTPFVAH 336 + AD AMY K + Sbjct: 538 IKCADKAMYAAKSEGRNRFVYFS 560 >UniRef50_Q21WS3 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21WS3_RHOFD Length = 1034 Score = 350 bits (900), Expect = 3e-95, Method: Composition-based stats. Identities = 68/345 (19%), Positives = 127/345 (36%), Gaps = 34/345 (9%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 + + + E + L +E + D ++++ Y Sbjct: 459 VLWHGFVSDVTAHKQAEESLITLSAAVEQ----SPVSIVISDPRGLIEYVNPMFEQVSGY 514 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 R + + DE + W +A ++G Sbjct: 515 RRAEVMGQNP-----RILSSHEKSEDEYREMWATLLAGDI-----------------WHG 552 Query: 124 TLCAASSEKR-QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGL 182 + + W + A + G Y+ + + + + A A + ++ D LTGL Sbjct: 553 EFHSRRKDGSLFWEQAAIAPIFDDHGRPIHYLAIKEDITKRKAAEAEIEHLAFYDLLTGL 612 Query: 183 PNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTL 242 PNRR + + L + ++ + FIDLDNFK +ND GH GD+ L QV +RLN Sbjct: 613 PNRRLLNDRLQQVLAVGTRSRRHGALLFIDLDNFKNLNDTQGHEQGDVLLQQVAQRLNFC 672 Query: 243 QQNGEVIGRLGGDEFLVVSLNNENA------DISSLRERIQQQIRGEYHLGDVDLYYPGA 296 + + + RLGGD+F+V+ + + ++I + Y ++ A Sbjct: 673 VRECDTVARLGGDDFVVMLQDLSEQQTEAATQAEGVGQKILDALHQPYPF-GHFTHHGSA 731 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 S+G+ + + L AD+A+YQ K + T P + + Sbjct: 732 SVGVALFNASQDTVEELLKRADLALYQAKDAGRNTLRFFDPDMQA 776 >UniRef50_A1K923 GGDEF/PAS/PAC-domain containing protein n=1 Tax=Azoarcus sp. BH72 RepID=A1K923_AZOSB Length = 1255 Score = 350 bits (900), Expect = 3e-95, Method: Composition-based stats. Identities = 68/332 (20%), Positives = 124/332 (37%), Gaps = 29/332 (8%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 I V++ + + + E+ +R + V + D E R+ + Y Sbjct: 924 TAILSVARDVTQRRDSEAQLR----LAATVFTHAHEGIAICDAERRIVDVNPTFCEITGY 979 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 + ++ PD W G + G Sbjct: 980 SRQEAI-----GASLALLNSGEDRQALSPDMWQ-----------------TVARRGHWEG 1017 Query: 124 TLCAASSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGL 182 L + ++++ + G YI + + ++ L ++ D LTGL Sbjct: 1018 ELWNLRKDGTEYAQRLTISAVYDAGGTPTHYIGTFSDITFVKRQQEQLEHLAHYDPLTGL 1077 Query: 183 PNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTL 242 PNR + + L + AR + + ++DLD FK +ND GH +GDL L+++G RL Sbjct: 1078 PNRSLLADRLQLALAQARREESAVAVCYLDLDGFKAVNDELGHQAGDLLLVEIGRRLKDC 1137 Query: 243 QQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIV 301 + G+ + RLGGDEF+++ L+ + R+ I + + AS+GI Sbjct: 1138 VRAGDTVARLGGDEFVLLLLDVAGQEECIQAVSRVLAAIARPVTIAG-EYRSVSASIGIA 1196 Query: 302 EVDPETTDADSALHAADIAMYQEKKHKQKTPF 333 + + + L AD AMY K+ + Sbjct: 1197 LFPDDDDEPEVLLRHADQAMYLAKQRGKNCYQ 1228 Score = 64.7 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 52/172 (30%), Gaps = 21/172 (12%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 +++AR S + + L+ + D E ++ + R+ + A Sbjct: 798 ELLARWVGSAIEADRSRRQLAASEARLQTIIDTEPECVSLRTPDGRVLEMNAAG------ 851 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 V D A+ + + + + G + L I GS Sbjct: 852 ---LALVEADSVEALNAVGLPQLVAPAYREAFAALGRRVSAGESATLEFEIVGLRGS--- 905 Query: 124 TLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSY 175 R+W + L+ +G + + V Q R++ A L + Sbjct: 906 ---------RRWIDAHATALRDASGEVTAILSVARDVTQRRDSEAQLRLAAT 948 Score = 48.5 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 67/181 (37%), Gaps = 16/181 (8%) Query: 3 DQIIARVSQSLAK--------EQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIM 54 + R +SLA+ LE +R+ L ++ ++ +++V + + Sbjct: 649 EAAERRQRESLARLNEVSALSHLPLEEQLRRALAIVAAQLELPCGIVSRVQEG---TYTV 705 Query: 55 FARNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEV--PDRWGDCIAARNLGITTFLST 112 A + + + T + C + E+ + R+ RN G+ ++ Sbjct: 706 QAHVAPGEDLRDGQTFLLGDTYCDITLREHRVVAIANMGESRYLSHPCYRNFGLEAYIGA 765 Query: 113 PIHLPDGSFYGTLCAA--SSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAAL 170 + G+ YGT+ + R + + + ++L A + I+ + QL + A L Sbjct: 766 -VVHVGGAVYGTVNFSAPHPYARDFDDADREFVELLARWVGSAIEADRSRRQLAASEARL 824 Query: 171 I 171 Sbjct: 825 Q 825 Score = 43.5 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 20/195 (10%), Positives = 51/195 (26%), Gaps = 40/195 (20%) Query: 10 SQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFT 69 ++ + + +E+ +R ++D + ++ + R ++ + Y Sbjct: 521 ARDITLRKRVENELR----KFRFISDNANDANFLLNPDGRFLYVNALACERLGYSEAEL- 575 Query: 70 VSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAAS 129 L D + + W R TL Sbjct: 576 ------LQMSVPDIDPTYGTPCSRPWTQRPGDRPAPFE----------------TLHRCR 613 Query: 130 SEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREAN-------AALIAQSYTDSLTGL 182 + E ++ F G ++ + + +L + +L+ L Sbjct: 614 DGRTIPVEITLTSVE-FQGERLRF-ATARDITDRKRIEAAERRQRESLARLNEVSALSHL 671 Query: 183 PNRRAIFENLTTLFS 197 P + E L + Sbjct: 672 P----LEEQLRRALA 682 >UniRef50_Q2SFI2 FOG: EAL domain n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SFI2_HAHCH Length = 913 Score = 350 bits (899), Expect = 4e-95, Method: Composition-based stats. Identities = 75/333 (22%), Positives = 129/333 (38%), Gaps = 29/333 (8%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 + + + E ++Q +V D + D + + A Y ++ Sbjct: 327 ILVDYTERRRHEKELQQ----AAVVFDAIREAVIITDDARNIVAVNNAFTDITGYTLDDV 382 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + L + + F+ + G + G + Sbjct: 383 -YGRNPRLQQSGRHDKTFY-------------------RSLW--RSITEHGHWQGEIENK 420 Query: 129 SSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + V+ G +A Y+ + + ++E L + DSLTGLPNR Sbjct: 421 RRNGEIYPAWQNINVVYDKNGNVANYVSVFSDISVIKEKEKQLRHLANHDSLTGLPNRLL 480 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 F +L AR ++ + FIDLD FK+IND GH +GD+ L V RL + + Sbjct: 481 FFNSLENSLERARRRRMEVALMFIDLDRFKIINDTMGHEAGDILLKTVARRLLEAVRGED 540 Query: 248 VIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 ++ RLGGDEF + N D ++ ++ + IR H+G ++ AS+GI + Sbjct: 541 MVARLGGDEFTISLEELSNTEDAAAKAGKLIETIRQPVHIGGHEI-VCSASIGIAIFPHD 599 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 +A + AAD AMY+ K+ + T L Sbjct: 600 ADNAQNLARAADAAMYRAKELHRNTFEFYTSEL 632 Score = 50.8 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 20/169 (11%), Positives = 40/169 (23%), Gaps = 20/169 (11%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 + Q + + + E+ + ++ + + +D + I Y Sbjct: 197 MHGTIQDITERKRDENRKNEYAHLIYDLYNNAPCGYHSLDPRGVIVDINETALRWLGYSR 256 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 L + + + D V W + G + L I DG + L Sbjct: 257 --------SELVGKVMFCDLLSEDCVQLCWDKLGQLKKGGALSNLELNIRCKDGRLFCVL 308 Query: 126 CAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 LQ G + R L + Sbjct: 309 ------------LTSTALQSEDGEFRGSRCILVDYTERRRHEKELQQAA 345 >UniRef50_Q602I2 Sensory box protein/response regulator n=1 Tax=Methylococcus capsulatus RepID=Q602I2_METCA Length = 710 Score = 350 bits (898), Expect = 5e-95, Method: Composition-based stats. Identities = 80/338 (23%), Positives = 140/338 (41%), Gaps = 31/338 (9%) Query: 7 ARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPE 66 R+ + +A+ ++ ++ + MV S + V+ + R+ + A + Y PE Sbjct: 133 RRLQREIAEHKAAREQLQ----VAGMVFSASSEGMLLVNADNRIVAVNPAFVALTGYGPE 188 Query: 67 NFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLC 126 + V D L + F+ + G++ G + Sbjct: 189 DV-VGKDPKLLQSGRHGPAFY-------------------QAMWAA--LEATGTWRGEIW 226 Query: 127 AASSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNR 185 +++E + AG + + + + + + + A + QS D+LT LPNR Sbjct: 227 NRRRNGEEYAEHLTINTIYDEAGKVHLRVALFSDITEKKASEALIEFQSCYDALTRLPNR 286 Query: 186 RAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQN 245 R + E L A ++ + +IDLD+FK +ND GH+ GD L+QV R+ + Sbjct: 287 RLLAERLALASERAHRDRGRVALLYIDLDHFKEVNDTLGHHQGDALLVQVAHRVRRCVRE 346 Query: 246 GE--VIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVE 302 E + RLGGDEF V+ + E ++ L I + + LGD L + AS+GI Sbjct: 347 SETVTVARLGGDEFTVIVPDFEGMDEVERLARAIIDSLSEPFRLGDQ-LAHVSASIGITV 405 Query: 303 VDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + D D L AD AMY K+ + +P + Sbjct: 406 FPDDAADTDGLLRNADQAMYAAKRAGRNGYQAFNPEMQ 443 >UniRef50_C6X941 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6X941_METSD Length = 738 Score = 350 bits (898), Expect = 5e-95, Method: Composition-based stats. Identities = 74/350 (21%), Positives = 133/350 (38%), Gaps = 30/350 (8%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 + + L + +S+ + + + + + + D + +D I + Sbjct: 133 ENALEHSRLEL-QNKSIHARLEESETLYQYLIDSSPDIIYTLDDNGNFTFINNRVETLLG 191 Query: 63 YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY 122 Y E +E +R R G + + L Sbjct: 192 YSRETMLGK----------HYTLLIHEEDYERAHHAFNERRTGNRAAKNVELRLRCQE-- 239 Query: 123 GTLCAASSEKRQWSERAEQVLQLFAG----LIAQ------YIQKEALVEQLREANAALIA 172 SE+RQ + V+ G + + ++A A+ Sbjct: 240 -----RRSERRQPEQNYITVVINAMGIYGTHPEHGTPFNGTYGVARDITERKKAEQAITH 294 Query: 173 QSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFL 232 Q+Y D+LT LPNR + LT A+ HK+ I F+DLD FK +ND GH GD L Sbjct: 295 QAYHDTLTDLPNRMLFKDRLTVAIHHAKRNKHKLAIMFLDLDRFKWVNDTLGHLYGDELL 354 Query: 233 IQVGERLNTLQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDL 291 QV RL + + + R+GGDEF ++ + D + + ++I +++ + L D ++ Sbjct: 355 KQVAARLRNCMREQDTLARMGGDEFTMLLHELNQPDDATVIAQKIFDELKRPFMLDDREI 414 Query: 292 YYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + S+GI ++ + ADIAMY K + P+++S Sbjct: 415 FISS-SIGIAIYPDHGDSIENLIKRADIAMYHVKWRGKNGFQYYDPSMNS 463 >UniRef50_Q7NTV0 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NTV0_CHRVO Length = 1390 Score = 350 bits (898), Expect = 6e-95, Method: Composition-based stats. Identities = 72/335 (21%), Positives = 131/335 (39%), Gaps = 29/335 (8%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 ++ + + + E ++ V D + V+ + + + A + Y Sbjct: 809 MSGTHTDITERKVFEQTQKE----AAAVFDSSYEGILMVNPDGVITKVNNAFSRITGYSA 864 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 E + SL F+ + L + D + G L Sbjct: 865 EE-AIGQKPSLLASGKQPISFYEE--------------------LWNSVKGHD-FWRGEL 902 Query: 126 CAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 ++E + V++ G + YI + + QL++ A L ++ D LTG+PN Sbjct: 903 WNRRKSGELYAELLSISVVRDEQGQVQHYIGIFSDITQLKQHEAELDRVAHYDPLTGVPN 962 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 RR + + L A + F+DLD FK +ND++GH GD L+ V L ++ + Sbjct: 963 RRLLSDRLRQAIVRANRSGRSCAVCFLDLDGFKAVNDKYGHAVGDQLLVTVSNNLKSILR 1022 Query: 245 NGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 + + RLGGDEF+V+ + + +R+ +GD ++ AS+G+ Sbjct: 1023 GDDTLARLGGDEFVVLLSEVGSPEECMLVLDRVLATASRPMPVGDAEVGV-TASIGVSLY 1081 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPA 338 + D D+ L AD AMY K + + P Sbjct: 1082 PQDNVDPDTLLRHADQAMYLAKDAGKNRYQLFDPE 1116 Score = 50.5 bits (120), Expect = 9e-05, Method: Composition-based stats. Identities = 16/167 (9%), Positives = 43/167 (25%), Gaps = 19/167 (11%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 + Q + + + + V+ L++V + S D+ + + + Sbjct: 436 LYGTMQDITERKRMAMQVKASESRLQLVAEATSDGFWDWDLRSGKVY-------RSSRYY 488 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGI-TTFLSTPIHLPDGSFYGT 124 E + ++P A R + + D G Sbjct: 489 EVTGTQPEDDSGDFRFFRQMVHPADLPYVLQAIEAHRRGKTPRIEIDFRLARQD---EGV 545 Query: 125 LCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 + + E G + + + + + + A+ L Sbjct: 546 RWLQARGRAV--EW------DERGAAVRLVGNLSDITERKRADEDLR 584 Score = 50.5 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 17/158 (10%), Positives = 35/158 (22%), Gaps = 17/158 (10%) Query: 11 QSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTV 70 + L ++ E +R L V ++E + S Y P + Sbjct: 684 RDLTEQHRAEQELRDRERQLARVIAGSDQGFWDWNLETNRFQVSPRWESMLGYGPGEMHI 743 Query: 71 SWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASS 130 + D E+ D R + + G + S Sbjct: 744 TADS------WYEHVHPEDVERTRDSIQRNLSGEMKSHEVEIRCRTRGGDWR---WILSR 794 Query: 131 EKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANA 168 + V + G + + + Sbjct: 795 GR--------VVERNDRGEPLSMSGTHTDITERKVFEQ 824 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/187 (10%), Positives = 53/187 (28%), Gaps = 37/187 (19%) Query: 2 SDQIIAR---VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARN 58 + ++ +S+ + +++ E+ +R ML+ + D+ Q ++ Sbjct: 301 HEGLLGGLFGISRDITRQKQAENQLRDSEAMLQQAQQLAGIGSWSWDLVDDRQ--SWSPE 358 Query: 59 SQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNL----GITTFLSTPI 114 + +++ + Y +R D D W A G+ + Sbjct: 359 AYRLFGLTEKSGPPGYPAMRRYFD---------ADGWAQLSEAVERCKLVGMGYECDVEL 409 Query: 115 HLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLRE-------AN 167 DG +W + + G I + + + + Sbjct: 410 LRADGE------------SRWLTMRGEARRDEEGAIVSLYGTMQDITERKRMAMQVKASE 457 Query: 168 AALIAQS 174 + L + Sbjct: 458 SRLQLVA 464 Score = 44.3 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 20/158 (12%), Positives = 39/158 (24%), Gaps = 28/158 (17%) Query: 21 SLVRQLLEMLE-------MVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWD 73 ++RQ LE + V S + DV+ R + A + D Sbjct: 190 EMLRQALERVALHRALLDAVVSSTSDAVFVKDVQGRYLLVNQAALAFVGKTSGEVIGKDD 249 Query: 74 YSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKR 133 + F + + G + L +G R Sbjct: 250 ---------RDVFDEETARELIIQDRLIMQSGRVQTHEEHLALQNGE------------R 288 Query: 134 QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 + + GL+ + + ++A L Sbjct: 289 MVFLVTKGPVYNHEGLLGGLFGISRDITRQKQAENQLR 326 Score = 40.4 bits (94), Expect = 0.096, Method: Composition-based stats. Identities = 16/162 (9%), Positives = 41/162 (25%), Gaps = 34/162 (20%) Query: 10 SQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFT 69 + + + + +R V + + DV+ A + ++ Sbjct: 570 LSDITERKRADEDLRL-------VLNEAGDAIWVTDVDGYFIFANPAACRLTGHSLDDL- 621 Query: 70 VSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAAS 129 R + + + E + +A + +G+F + Sbjct: 622 ---------REMHIHDLVAPECLGLLAEHLA--------------KINNGAFLRSEWKLR 658 Query: 130 SEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 +K ++ G YI + + A L Sbjct: 659 LKKSGTVSVDLTSGKMKDGR---YIAFGRDLTEQHRAEQELR 697 >UniRef50_Q21UE9 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=3 Tax=Comamonadaceae RepID=Q21UE9_RHOFD Length = 1114 Score = 350 bits (898), Expect = 6e-95, Method: Composition-based stats. Identities = 71/344 (20%), Positives = 129/344 (37%), Gaps = 27/344 (7%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 + + + + E +R+ +T++ S + + D + R + + + Sbjct: 535 VLWNGLITDITARKQSEERLRESEARFRALTELSSDWYWEQDAQFRFVRLDGSSQTSMRL 594 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 +N+ + + + + W A T + Sbjct: 595 PEDNYLGVTRWETDAQGVSQAQ---------WAAHRAVLQAHETF-----------HDFE 634 Query: 124 TLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLP 183 LC + W + + G Y + + + A + ++ D LT LP Sbjct: 635 MLCTDAVGCLTWVAISGTPIFDVQGQFKGYRGIGRDISERKRAEEKIERLAFYDVLTDLP 694 Query: 184 NRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQ 243 NRR + + L + + + FIDLDNFK +ND GH+ GD L QV +RL Sbjct: 695 NRRLLMDRLQQALVSSAREHGAGALLFIDLDNFKDLNDTQGHDVGDALLQQVAKRLLASV 754 Query: 244 QNGEVIGRLGGDEFLVVSLNNENADI------SSLRERIQQQIRGEYHLGDVDLYYPGAS 297 + + + RLGGDEF+V+ E + +I Q+ Y LG + ++ S Sbjct: 755 RETDTVARLGGDEFVVMLQGLERTQADAITQVEQVGRKIMAQLNQPYRLGSAE-HHSTPS 813 Query: 298 LGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 +G+ D + D L AD+AMY+ K + T P + + Sbjct: 814 IGVTLFDNQQQTLDDLLKQADLAMYEAKSAGRNTLRFFDPTMQA 857 Score = 45.8 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 55/183 (30%), Gaps = 20/183 (10%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYL--TKVDVEARLQHIMFARNSQ 60 + I+ V Q + E++ ++ L ++ +T + ++ + R Q Sbjct: 402 EAIVFGVVQDVTHERAAALALQDRLGFIQNITSRVPGMVFQLRLKTDGRFQF----GYVS 457 Query: 61 KMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGS 120 + VS + + A D+V + A+ + DG Sbjct: 458 DLVREIFRGVSPEQIMQDAAGILKLHHPDDVSEFIASIKASARELKPWRHEYRLRFEDGE 517 Query: 121 FYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIA-QSYTDSL 179 L A+ E+ A + + +++ L ++ +L Sbjct: 518 VRWLLGQATPERE-------------ADGTVLWNGLITDITARKQSEERLRESEARFRAL 564 Query: 180 TGL 182 T L Sbjct: 565 TEL 567 >UniRef50_B2T9B2 Diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(S) n=2 Tax=Burkholderiales RepID=B2T9B2_BURPP Length = 1037 Score = 349 bits (897), Expect = 7e-95, Method: Composition-based stats. Identities = 71/338 (21%), Positives = 124/338 (36%), Gaps = 35/338 (10%) Query: 11 QSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTV 70 + + + + +E+ +R + V + D A + + A Y E Sbjct: 461 RDITERKQVEAELR-----IAAVAFDSMEPMMITDASATILRVNSAFTECTGYTAEEIVG 515 Query: 71 SWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASS 130 R + + W + G + G + Sbjct: 516 QTP-----RVLRSGRHDDAFFQEMWEE-----------------IHSAGGWQGEVWDRRK 553 Query: 131 EKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIF 189 + + + G ++ Y+ + + + A + ++ D+LT LPNR + Sbjct: 554 NGEVYPKWLTISAVMSDNGTVSHYVGTHHDITERKIAEERIKELAFFDALTRLPNRTLLL 613 Query: 190 ENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVI 249 + L + + + FIDLD+FK +ND GH+ GDL L QV RL + + Sbjct: 614 DRLRQAITASARNEACGALLFIDLDHFKTLNDTLGHDKGDLLLQQVARRLADSVLESDTV 673 Query: 250 GRLGGDEFLVVSLNNE------NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 R+GGDEF+VV N ++ ERI + YHLG ++ Y AS+G Sbjct: 674 ARVGGDEFVVVLGNLHKNRQEAANQTEAVGERILAVLGSPYHLGKIE-YRTSASIGATVF 732 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 D L AD+AMY+ K+ + P + + Sbjct: 733 RGHQASIDELLKQADLAMYKSKERGRNAVRFFDPDMQT 770 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 20/164 (12%), Positives = 44/164 (26%), Gaps = 25/164 (15%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 R++ ++ KE +R+ E + D + + + + I A + Y + Sbjct: 336 RLASAMTKE------LRENEEKFRAIADCTVNWEIWWGTDGKPRWINSAVEAYIGYTVDE 389 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 D + ++P + A L DGS Sbjct: 390 CMALPD-------FAGTVIYPADIPRVAPEFQKALQGLRGDDLEFRCVRKDGSL------ 436 Query: 128 ASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 W + + G + + + ++ A L Sbjct: 437 ------MWLSASWVPITDSKGEFIGFRTSGRDITERKQVEAELR 474 >UniRef50_B7GKR7 Multidomain signal transduction protein (Contains PAS, GGDEF and EAL domains) n=2 Tax=Bacillaceae RepID=B7GKR7_ANOFW Length = 594 Score = 349 bits (897), Expect = 8e-95, Method: Composition-based stats. Identities = 74/317 (23%), Positives = 125/317 (39%), Gaps = 25/317 (7%) Query: 25 QLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDEN 84 L + + + D E + A + Y E + ++ + + + Sbjct: 36 TFLSIAHTIIQEADEGIIVTDSEGHILLANPAFETVTGYTQEEV-LGKKPNILRSGLHDR 94 Query: 85 CFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSER-AEQVL 143 F+ + T G + G + + E + + Sbjct: 95 KFYEN-------------------MWET--IRDHGVWKGEIWNKRKNGELFVEWLTIKAV 133 Query: 144 QLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLN 203 AG Y+ + V Q + L S D LT +PNR+ + L L AR N Sbjct: 134 YDVAGNPTHYVAIFSDVTQHKRTMEQLARLSNYDLLTNVPNRQLFTKRLQHLLDTARRYN 193 Query: 204 HKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN 263 ++ I F+DLD FK IND GH SGD+ L +V RL L + + + R+GGDEF+V+ Sbjct: 194 QQLAILFLDLDRFKYINDELGHYSGDILLQKVANRLKKLLRTKDTLARIGGDEFVVILPK 253 Query: 264 N-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMY 322 + + S+ E+I + ++ + L D+Y AS+GI + D + L AD AM Sbjct: 254 LKDIQEAVSIAEQIIESLQAPFLLHHKDIYI-SASIGISVYPNDGDDGEMLLRRADRAMQ 312 Query: 323 QEKKHKQKTPFVAHPAL 339 + K+ + + L Sbjct: 313 KAKESGRNRFELYTAKL 329 >UniRef50_B3E661 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=cellular organisms RepID=B3E661_GEOLS Length = 1027 Score = 349 bits (897), Expect = 8e-95, Method: Composition-based stats. Identities = 71/348 (20%), Positives = 141/348 (40%), Gaps = 34/348 (9%) Query: 1 MSDQIIARV-----SQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMF 55 + + R+ + ++ + E +++L +E ++ + D + ++++ Sbjct: 446 LYNAAGERIGAIEAIRDISDRKQSELFLKKLTHGIE----NSASAVVITDTQGVIEYVNK 501 Query: 56 ARNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIH 115 + E L A F D W ++ R Sbjct: 502 KFIQLTGFSLEEAVGKNPRILKSEATPPEVFV-----DLWKTILSGRE------------ 544 Query: 116 LPDGSFYGTLCAASSEKRQ-WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 + G L WS + L+ +G I +I + + + A A + + Sbjct: 545 -----WRGELLNRRKNGEVYWSITSISPLRNDSGEITHFIANVEDINERKNAEATIEHLA 599 Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 Y D LT LPNRR + + L +R + + ++DLD+FK +ND GH +GDL L + Sbjct: 600 YFDPLTDLPNRRMLQDRLELALRRSRRHGSNVALMYLDLDSFKHVNDSMGHPAGDLLLKE 659 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYY 293 + R + + ++ +V+ RLGGDEF ++ + + D+ + +++ + + L ++ Sbjct: 660 MAGRFSGVVRDDDVVCRLGGDEFALILHDIHQDQDVVPIAQKLIEAVAQPVPLDGREV-V 718 Query: 294 PGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 AS+GI + D + ADIA+Y K+ + T L+S Sbjct: 719 VTASIGIALFPRDGGDVKNLEKHADIALYHAKEEGKNTFRFYLEELNS 766 Score = 53.5 bits (128), Expect = 1e-05, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 49/169 (28%), Gaps = 12/169 (7%) Query: 10 SQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFT 69 + LAK +++E + + L + D + +D R+ A E Sbjct: 319 REQLAKARAVEQALLDARQQLNDIIDFFPDAVFVIDRNKRVTIWNRAIEKMSGVPKEEML 378 Query: 70 VSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY--GTLCA 127 D+ + ++ D +AA+ I G T C Sbjct: 379 GKGDHEYSIPFYGQRRTQLLDLLDLDDAELAAKYSNIRRV---------GEVLDAETFCP 429 Query: 128 ASSEK-RQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSY 175 A + + L AG I+ + +++ L ++ Sbjct: 430 ALHDGKGAYVWATGVPLYNAAGERIGAIEAIRDISDRKQSELFLKKLTH 478 >UniRef50_Q39WZ5 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Geobacter RepID=Q39WZ5_GEOMG Length = 739 Score = 349 bits (896), Expect = 9e-95, Method: Composition-based stats. Identities = 70/333 (21%), Positives = 127/333 (38%), Gaps = 30/333 (9%) Query: 13 LAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSW 72 + + VR+ E L D + + V + RL ++ A Y E Sbjct: 168 MTVIRRETDAVREGEERLATFLDTANDLIHSVTPDGRLLYVNEAWQRTLGYSAEEADAVP 227 Query: 73 DYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGS---FYGTLCAAS 129 + + D + + + + DG G+L A Sbjct: 228 FFDIL---------HPDSREQCCAELQRVVSGDALSPMEAVFTAKDGRSVIVEGSLSCAH 278 Query: 130 SEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIF 189 + + + + A L ++ D+LTGLPNR Sbjct: 279 GGDESSVIWSI----------------CRDITERKHAEEQLYRLAHHDTLTGLPNRILFM 322 Query: 190 ENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVI 249 + L +LA +++ + F+DLD FK+IND GH GD L QV R+ + + + Sbjct: 323 DRLQQAKALANRYRYQVAVLFLDLDRFKIINDTLGHPVGDHLLQQVAHRIAGCVREVDTV 382 Query: 250 GRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETT 308 R+GGDEF ++ +N + D+ + ++I + + +++ +L+ AS+GI + Sbjct: 383 ARIGGDEFTIILVNVDTVEDVKRMGQKILKTLAAPFNIDTHELFV-TASIGISLFPSDGD 441 Query: 309 DADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + D + ADIAMY K + P + + Sbjct: 442 NLDQLVKKADIAMYCVKGEGRNNVQFYSPQMDA 474 >UniRef50_C6P1C1 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P1C1_9PROT Length = 581 Score = 348 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 73/324 (22%), Positives = 132/324 (40%), Gaps = 25/324 (7%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVS 71 +LA + + + + V+++ + + VD + +Q I A + Y E+ + Sbjct: 280 ALAILATAQRKAMHQIALNAKVSEVSNDGIVIVDEDNYIQDINPAFTTLTGYTRED-AIG 338 Query: 72 WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 + + F+ D W + G + G + + Sbjct: 339 RNPRFLSAGKQSHEFY----ADMWKSLLEV-----------------GHWEGEIWNRRKD 377 Query: 132 KRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFE 190 + E + L+ G + + + + Q R + + D LTGLPNR + Sbjct: 378 GEIYLEKLSIYTLKDAQGKVVNRVGVFSDITQSRVEQETVAHHAQHDFLTGLPNRLLFRD 437 Query: 191 NLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIG 250 +LA+ + K + +IDLD FK +ND GH GDL L+ V +RL + + + + Sbjct: 438 RFNQQLALAKRYSKKFAVMYIDLDRFKPVNDTLGHQVGDLLLMAVADRLKSQVREIDTVS 497 Query: 251 RLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTD 309 R GGDEF ++ D+++L E+I ++ + L + + G SLGI + D Sbjct: 498 RFGGDEFAILVSEVVTQRDVTALAEKILAALKAPFVLENHTVNISG-SLGIAIYPDDGMD 556 Query: 310 ADSALHAADIAMYQEKKHKQKTPF 333 ++ L AD AMY+ K T Sbjct: 557 METILSNADTAMYKAKHKGANTYC 580 >UniRef50_Q1NQ51 PAS:GGDEF:EAL n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NQ51_9DELT Length = 751 Score = 348 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 68/340 (20%), Positives = 128/340 (37%), Gaps = 28/340 (8%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 Q + + + Q LE +RQ MV + D + + A + Y Sbjct: 182 QGYRGIDRDITVRQQLEEWLRQS----AMVYENMWEGAVITDPAGTILDVNPAFSRITGY 237 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 + + + + K E F+ W + I G + G Sbjct: 238 AKDEV-IGKNPRILKSDRHEQAFY----QHMWRELI-----------------EKGQWRG 275 Query: 124 TLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGL 182 + + E + + G + Y+ + QL+++ A L + +Y D LT L Sbjct: 276 EIWNRRKNGEVYPEWLSISGVSDARGQTSYYVGVFTDLSQLKQSEAKLESLAYYDPLTAL 335 Query: 183 PNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTL 242 PNR + L A K+ + FIDLD F+++N+ + +GD L+ V +R + Sbjct: 336 PNRLLLHSRLEHALEWAERHQTKVGVYFIDLDQFRVVNESLSYQAGDQLLVMVSKRFLSC 395 Query: 243 QQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIV 301 + + + R GGDEF+++ + + + + + + L Y GAS+GI Sbjct: 396 LRVDDTLARPGGDEFVLIQEALADPQEATETARELLASLDQPFQLDGGQEIYLGASIGIT 455 Query: 302 EVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + T L A+ AMY K++ + +++ Sbjct: 456 VFPGDGTTPPDLLKNAEAAMYHAKENGRNRFSFYAEQMNA 495 Score = 42.7 bits (100), Expect = 0.017, Method: Composition-based stats. Identities = 18/142 (12%), Positives = 38/142 (26%), Gaps = 20/142 (14%) Query: 33 VTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVP 92 +T+ + ++ +VD ++ + Y P+ + E V Sbjct: 84 LTETSNDWIWEVDTSGSYTYVSPQVKTLLGYRPDEVIGRTPFDFMPSGEAER------VR 137 Query: 93 DRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQ 152 DR+ A + I L G +R E + G Sbjct: 138 DRFAAISAEQEAIIN--LVNTNLHRQG------------RRVILETSGVPFYDQHGTWQG 183 Query: 153 YIQKEALVEQLREANAALIAQS 174 Y + + ++ L + Sbjct: 184 YRGIDRDITVRQQLEEWLRQSA 205 >UniRef50_Q47X88 Sensory box sensor/GGDEF/EAL domain protein n=2 Tax=Colwellia psychrerythraea 34H RepID=Q47X88_COLP3 Length = 1086 Score = 348 bits (894), Expect = 1e-94, Method: Composition-based stats. Identities = 67/335 (20%), Positives = 132/335 (39%), Gaps = 29/335 (8%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 +S+ + ++ E ++ + ++V S + D + + I A + Y Sbjct: 506 GISKDITNKRQQEEDLK----LADIVYQNSSEAMMITDSKNEIIAINPALSEITGYSSSE 561 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 + W + G++ G + Sbjct: 562 LIGKNPN-----VFSSGKQNPEFYQLMWEEIKLT-----------------GTWQGEIWN 599 Query: 128 ASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 +++ E + + G + + I + + + ++ +A ++ Q+ DSLT LPNR Sbjct: 600 TKKNGKEYPEWLSISTIYDDYGNVFRRIALFSDITEKKKKDALILRQAKYDSLTNLPNRI 659 Query: 187 AIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNG 246 + L ++ N K + FIDLDNFK IND GH GD LI+ G+R+ + Sbjct: 660 MFIDRLEQEIKVSHRKNQKFALIFIDLDNFKKINDTRGHVYGDALLIEAGKRITHCIREV 719 Query: 247 EVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDP 305 + + RLGGDEF ++ + + ++ S+ +++ Q + + + + Y ASLG+ Sbjct: 720 DTVARLGGDEFTILLSDIADIHNVESICQKVLQTLSEPFFISKMYTYI-SASLGVTIYPN 778 Query: 306 ETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + + L AD AMY K + ++ Sbjct: 779 DASSTLELLKNADQAMYLAKNLGRNRFCYFTASMQ 813 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 20/173 (11%), Positives = 49/173 (28%), Gaps = 21/173 (12%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 + I ++ Q+L ++ L + D + ++ R + + Sbjct: 372 NNIALGFNEMATSFQNLMIDKEEISSRLRAIIDNSPIGIWFTGIDGRYHFVNKTFCNLAG 431 Query: 63 YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY 122 E+ + +L + DE + A++ +F + P Sbjct: 432 IKEEDMLNTPSSNLAELLGDEIAHHCLDSDKA----ALAQDSPHVSFETIP--------- 478 Query: 123 GTLCAASSEKRQWS-ERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 S + + E + L+ G + I + R+ L + Sbjct: 479 ------RSNAKPYILEITKVKLKNAQGEVVGLIGISKDITNKRQQEEDLK-LA 524 >UniRef50_B9YY70 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Lutiella nitroferrum 2002 RepID=B9YY70_9NEIS Length = 1054 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 75/341 (21%), Positives = 132/341 (38%), Gaps = 26/341 (7%) Query: 4 QIIARVSQSL-AKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 Q +SL A++ S Q + + D S + D + + A Sbjct: 475 QYQDHAYRSLRARDMSRRQQAEQQQRLAAKIFDTSSQAIVISDASNHIVMVNRAFTDITG 534 Query: 63 YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY 122 Y + + SL F+ W G + Sbjct: 535 YSAQE-AIGRQPSLLSSGRQPPAFY----QKMWQQLA-----------------QRGHWA 572 Query: 123 GTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTG 181 G + + + E + +L+ AG ++ ++ + + + +E A + + D LT Sbjct: 573 GEIWNRRKDGTIYPEWLSISLLRDEAGQVSHHVALFSDISERKEQEAHIRHMAEHDFLTD 632 Query: 182 LPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNT 241 LPNR I + L A +++ + F+DLD+FK IND GH GD L QV +RL Sbjct: 633 LPNRALIHDRLAQAIRAAARQKNRLAVLFLDLDHFKNINDTLGHAHGDELLKQVAQRLQH 692 Query: 242 LQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGI 300 + + +GR GGDEF+++ A+ + L +R+ +R + + L S+GI Sbjct: 693 TVRGSDTVGRNGGDEFVLIVPELASPAEAAQLAQRLLDDLRRPFQIDGQALAIST-SIGI 751 Query: 301 VEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 ++ L +AD+AMY K + P L++ Sbjct: 752 SLFPDNGSELQELLVSADLAMYHAKAQGRNRYQFFTPELNA 792 >UniRef50_UPI0001699903 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699903 Length = 592 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 72/333 (21%), Positives = 131/333 (39%), Gaps = 26/333 (7%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 V + + ++ E +R M V + + + D + R++ + A Y E Sbjct: 148 VKEDITAQKRAEEQLR----MNATVFETTTEGIMVTDADNRIKTVNPAFTRITGYQAEEV 203 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 L R D + + R+L S L Sbjct: 204 IGRNPRLLSLRPPRPGVLQGDVGLGQTAGILVGRSLEPAQGWQHLPRSGSRSPPSVLNTE 263 Query: 129 SSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAI 188 S S + +E+ + Q+ D+LTGLPNR + Sbjct: 264 RSRNTSPSSPTS--------------------TRRKESEQQIRFQANYDALTGLPNRSLL 303 Query: 189 FENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEV 248 + LT + A ++ + F+DLD FK++ND FGH GD L ERL + + + Sbjct: 304 LDRLTHAINSAEREAWELALLFVDLDQFKIVNDTFGHVMGDELLQHAAERLKSCVRESDT 363 Query: 249 IGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPET 307 + R GGDEF+++ + D + + +++ +++ + L ++ GAS+GI + Sbjct: 364 VARFGGDEFIILLQDISGADDAAQIADKVIEKLSRYFLLAGREV-IIGASIGITLFPDDA 422 Query: 308 TDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 +D+D+ L AD+AMY+ K+ + A+ Sbjct: 423 SDSDTLLRNADMAMYRAKETSRNRYQFFTTAMQ 455 Score = 84.0 bits (207), Expect = 8e-15, Method: Composition-based stats. Identities = 21/167 (12%), Positives = 45/167 (26%), Gaps = 27/167 (16%) Query: 10 SQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFT 69 + + + + E +R+L LE + D E ++++ Y E Sbjct: 27 AHDITETKRAELELRKLSRALEQ----SPASVLITDTEGTIEYVNPKFEQISGYSSEEAI 82 Query: 70 VSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAAS 129 R + ++ + W A R + G Sbjct: 83 GKNP-----RILKSGDKSREDYKELWETIKAGRE-----------------WRGAFHNKR 120 Query: 130 SEKRQ-WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSY 175 + W + L+ G I +I + + + A L + Sbjct: 121 KDGTIYWESASISPLRNEGGEITHFIAVKEDITAQKRAEEQLRMNAT 167 >UniRef50_Q2YCL1 Diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(S) n=2 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2YCL1_NITMU Length = 1054 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 76/348 (21%), Positives = 144/348 (41%), Gaps = 31/348 (8%) Query: 2 SDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQK 61 S++ + + + + + E ++ + +D A ++ Sbjct: 468 SEEGLTVYFRDITERKESEQARQEAHVRIRQQAS-------LLDK---------ATDAII 511 Query: 62 MYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSF 121 ++ +N W+ + + + D +A + LS G + Sbjct: 512 VFGMDNCIEFWNQGAERLYGWTSEEVMGREVEMLYDNVAVFDEANRALLS------SGEW 565 Query: 122 YGTLCAASSEKR-QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLT 180 G L ++ E +++ G + Q + A ++ + DSLT Sbjct: 566 RGELAQRRRDQSMLNVEAHWTLVRNDDGEPQAIFAINTDITQRKSAENEILHLALYDSLT 625 Query: 181 GLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLN 240 GLPNRR + + L +++ + FIDLDNFKL+ND GH+ GDL L QV RL+ Sbjct: 626 GLPNRRLLLDRLGHALAVSARNQRMGALLFIDLDNFKLLNDTLGHDMGDLLLRQVAPRLS 685 Query: 241 TLQQNGEVIGRLGGDEFLVVS-----LNNENA--DISSLRERIQQQIRGEYHLGDVDLYY 293 + + + + RLGGDEF+V+ +++ A IS++ ERI+ ++L +++ Sbjct: 686 SCVRESDTVARLGGDEFVVILMGDFGEDHDEALTQISTICERIRSAFIQPFNLDPY-IHH 744 Query: 294 PGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 S+GI + ++ + L AD+AMYQ K + P + + Sbjct: 745 ITPSIGIALFNDQSQTTNELLKRADLAMYQAKASGRNAMRFFDPDMQA 792 >UniRef50_D0KJW8 Diguanylate cyclase with PAS/PAC and GAF sensors n=5 Tax=Pectobacterium RepID=D0KJW8_PECWW Length = 504 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 75/347 (21%), Positives = 136/347 (39%), Gaps = 10/347 (2%) Query: 2 SDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDM-ESTYLTKVDVEARLQHIMFARNSQ 60 D R + L+ L+ ++ ++ +E + VD + + + A + Sbjct: 158 HDNSYNRALELLSSGAPLKDILDAIIFSVEEKNPGRIVCSVLLVDKDKKCLTLGSAPSLP 217 Query: 61 KMY--IPENFTVSWDYSLCKRAIDENCFFSDE---VPDRWGDCI-AARNLGITTFLSTPI 114 Y N ++ + A E V W A G+ + S PI Sbjct: 218 GFYKNAIHNVKIADGVASFGTAAYTGKRVVAEDISVHPHWSLYKGLALYAGLRSCWSEPI 277 Query: 115 HLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 + G L + +E ++ A LI+ I++ ++ LR + + Sbjct: 278 IGQNKEILGVLSVYHRKVYAPTEEEIFSIEKSAQLISIAIERYHAIDMLRRSEEHYRQLA 337 Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 + DSLT L N E + L++ KI + F+DLD FK IND FGH GDL L + Sbjct: 338 HYDSLTSLANGLTFAEQMEQAILLSKQTGRKIALMFLDLDKFKQINDSFGHAVGDLLLKE 397 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYY 293 R+ ++ + + R GDEF+++ + D + ++I + + + L Sbjct: 398 AAARMRGAVRDSDTVYRRSGDEFIILLQGIKEIDNTLYVADKIHNALNKPFEINGKTLDI 457 Query: 294 PGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 S+GI +D+ + AD AMYQ K + + H +++ Sbjct: 458 -SCSIGIALYPEHGSDSLTLAINADSAMYQAKAMGRSQTQIYH-SMN 502 Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 16/178 (8%), Positives = 43/178 (24%), Gaps = 33/178 (18%) Query: 11 QSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTV 70 + + ++ E + L M + + D + ++ + Y+P+ Sbjct: 21 RKIKQKFKTEQKKQDFLNMTFFAMEYSPASIMIADENCEIIYVNRQFITMSGYMPDEVIG 80 Query: 71 SWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASS 130 ++ + D W + G Sbjct: 81 KKTN-----ILNSGMTNASVYEDLWA-----------------TINKGNVWSGEFVNRRK 118 Query: 131 EKR-QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + + W + + A QY+ + + + + + D NR Sbjct: 119 DGQLYWEKANIVKIYNKASNTTQYVGIKLDITERKSQE-------HHD---NSYNRAL 166 >UniRef50_Q2BR92 Putative uncharacterized protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BR92_9GAMM Length = 944 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 70/320 (21%), Positives = 121/320 (37%), Gaps = 27/320 (8%) Query: 24 RQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDE 83 ++ L + V D S + + RL + A Y + V + + + Sbjct: 391 QRALSLASQVFDNASEGIMVTGSDNRLLTVNDAFVDITGYSADEV-VGKNPKFLQSGRHD 449 Query: 84 NCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSER-AEQV 142 F+ + G + G + + + + Q Sbjct: 450 ETFY-------------------RSMWQM--INTSGYWRGEIWNRRKNGEVFPQWLSIQA 488 Query: 143 LQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHL 202 + AG+ YI + + ++ L S D LT LPNRR + + SL+R Sbjct: 489 VTDSAGMARNYIASITDLTERKQVEEKLRYLSDFDPLTNLPNRRLLGYRVDQTLSLSRRQ 548 Query: 203 -NHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVS 261 + + + +IDLD+FK IND GH GD L +V +R+ L + G+ + RLGGDEF+++ Sbjct: 549 PDQQFALLYIDLDHFKNINDSLGHRFGDEILQKVAKRITELVREGDTVSRLGGDEFMILM 608 Query: 262 LNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIA 320 ++L ERI I L + S+GI + D L AD A Sbjct: 609 PELHKLEQAANLAERILHNIAQP--LENDSHLMITPSVGIAVYPNDGDSFDKLLRNADAA 666 Query: 321 MYQEKKHKQKTPFVAHPALH 340 ++ K+ + ++ Sbjct: 667 VHFAKRQGRNNYQFYTAEMN 686 >UniRef50_D2XIQ4 Putative signal transduction protein n=1 Tax=uncultured bacterium 9F08 RepID=D2XIQ4_9BACT Length = 965 Score = 347 bits (892), Expect = 2e-94, Method: Composition-based stats. Identities = 72/336 (21%), Positives = 130/336 (38%), Gaps = 20/336 (5%) Query: 7 ARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPE 66 ++ Q ++ Q RQL + +M+ D + + +D R+ A + Y E Sbjct: 252 RQLHQMASETQQALHQARQLGQEQQMILDAAADAIIGLDNRGRVTFSNPAATALFGYSAE 311 Query: 67 NFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLC 126 ++L E E W G Sbjct: 312 ELQGEDLHALI-HLCKEGEAHPREECGLWRLLRFGGQYH----------------SGHET 354 Query: 127 AASSEKRQ-WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNR 185 + E + G++ + + + L +++ D LTGL NR Sbjct: 355 LRHKDGTPLPVEMNGSAIDDEKGVVIGAVLTFRDISERLSYEQELERRAHYDELTGLANR 414 Query: 186 RAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQN 245 + L + A + + F+DLD+FK++ND GH+ GD L+ + +RL T+ + Sbjct: 415 VLLKARLQQTTAQAHRHGKSVAVLFLDLDHFKIVNDGLGHDCGDRLLVAIAQRLQTVVRE 474 Query: 246 GEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVD 304 + + R GGDEF++V +N D + + R+ Q+I + + +LY AS+G+ Sbjct: 475 ADTVARHGGDEFVIVLSEPDNGEDAAEIGRRLLQRIAEPVWIDEHELY-TTASVGVSLFP 533 Query: 305 PETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + TD D+ L AD AMY+ K + ++ Sbjct: 534 RDGTDVDTLLRNADAAMYRAKHLGRNNLQFYSEEMN 569 >UniRef50_A8H6Y6 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=13 Tax=Proteobacteria RepID=A8H6Y6_SHEPA Length = 1064 Score = 347 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 66/335 (19%), Positives = 125/335 (37%), Gaps = 29/335 (8%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 + + + +E ++ + V + ++ D + + +I A Y Sbjct: 440 GIHTDITDRKRVEESLK----LAASVYNNSREAMSVQDDKGLIININAAFTDITGYTESE 495 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 L S + A +G + G + Sbjct: 496 VKNQNIKIL---------QCSRNNRSAYEQMHMAVE-------------EEGRWQGEVWL 533 Query: 128 ASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 ++ L +++ + + + ++A + Q+ D+LTGLPNRR Sbjct: 534 RRKNGEEFVVWLTLNALFDAEAQTQRHVALFSDITEKKQAEKIIWKQANYDTLTGLPNRR 593 Query: 187 AIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNG 246 + + L + + F+DLD FK +ND GH+ GD+ L + +RL ++ Sbjct: 594 MLLDYLNAEILKSDSREQHFALMFLDLDYFKEVNDTLGHDMGDMLLSEAAKRLKACIRDS 653 Query: 247 EVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDP 305 +V+ RLGGDEF +V + + + + I +I Y+LG+ Y AS+GI Sbjct: 654 DVVARLGGDEFTIVLSGVTDIKGVDKVAKHILTRIAEPYNLGEETAYI-SASIGITLYPD 712 Query: 306 ETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + + + L AD AMY K + P++ Sbjct: 713 DASTIEGLLKHADQAMYAAKDEGRNRFHYFTPSMQ 747 >UniRef50_C5UZT1 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Gallionella ferruginea ES-2 RepID=C5UZT1_9PROT Length = 1301 Score = 347 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 67/348 (19%), Positives = 143/348 (41%), Gaps = 35/348 (10%) Query: 1 MSDQIIA-----RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMF 55 M+D++ A ++ + + + +L + +E + D+ A +++ Sbjct: 720 MADELAALERGAHLASLAIERAQTGAWLNKLSQAVEQ----SPNSIVITDLNANIEYAND 775 Query: 56 ARNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIH 115 A Y EV + + + + T+ + Sbjct: 776 AFVKTTGYTL-----------------------PEVMGKNPRILHSGKTTVETYAAMWTQ 812 Query: 116 LPDGS-FYGTLCAASSEKRQWSERA-EQVLQLFAGLIAQYIQKEALVEQLREANAALIAQ 173 L G + G L + ++ E A L+ G + Y+ + + + ++ A + Sbjct: 813 LNSGQMWRGELINRRKDGTEYVELARISPLRHTDGRVTNYLSIKEDITEQKQVEARIRQL 872 Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 ++ D LTGLPN+ + + +A+ H + + F+D+D+FK IND GH GD L+ Sbjct: 873 AHFDLLTGLPNQTLLKDRAGFAMQMAQRSAHHLAVLFLDIDHFKNINDTLGHRIGDELLV 932 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYY 293 + +R+ L ++ + + R GGDEF++V + + + + E+I + + ++ +L Sbjct: 933 HLAKRMKLLLRDEDTLSRFGGDEFILVLPDTDADGAAHVAEKILETVAKTCYIEQHEL-V 991 Query: 294 PGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 S+GI + D D +AD+AMY+ K+ + + + Sbjct: 992 VTPSIGIAMYPSDGMDFDKLYQSADVAMYRAKQDGRNNFRFFTSEMQA 1039 Score = 83.6 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 51/158 (32%), Gaps = 6/158 (3%) Query: 7 ARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY--I 64 V +SLA+ +SL ++++QL+ E + + + + + A + Y Sbjct: 585 RSVLESLARGESLPAVLKQLVLSFEAIYPGMYCSVLLLSADGKRLLHGAAASLPDAYCEA 644 Query: 65 PENFTVSWDYSLCKRAIDE--NCFFSDEVPDR-WGDCIAARNLGITT-FLSTPIHLPDGS 120 + C A SD D W D A S PI G Sbjct: 645 INGALIGEKVGSCGTAAFTCKTTVVSDIATDPLWQDYKALALAHNLAACWSVPILSTKGQ 704 Query: 121 FYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEA 158 GT S+ R L+ A L + I++ Sbjct: 705 VLGTFALYYSKSRSPMADELAALERGAHLASLAIERAQ 742 Score = 58.5 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 26/197 (13%), Positives = 46/197 (23%), Gaps = 29/197 (14%) Query: 11 QSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTV 70 ++L +++SLE + L ++ + DVE I + Sbjct: 260 ETLRRQESLEHSMHHAESQLRLIVKTIPDLIWLKDVEGVYLSCNPMFERFFGAIEADIVG 319 Query: 71 SWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASS 130 DY R +D + A I T DG Sbjct: 320 KTDYDFVSR------EQADFFRAHDRAAMLADKPSINEEWVT--FADDGH---------- 361 Query: 131 EKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFE 190 R E + + G + + + + A + LT L N Sbjct: 362 --RACLETTKSPMFNAVGQLIGVLGIAHDITERLAAAKKIER------LTQLYN---ALS 410 Query: 191 NLTTLFSLARHLNHKIM 207 + Sbjct: 411 QCNQAIVHSSSEAELFA 427 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 22/179 (12%), Positives = 53/179 (29%), Gaps = 14/179 (7%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFA-----RN 58 +++ +Q++ S L Q+ + ++ ++ VD + + + Sbjct: 407 NALSQCNQAIVHSSSEAELFAQICQDAVRFGGLKMAWVGVVDHDTGWIRPVASYGDGMDY 466 Query: 59 SQKMYIPENFTVSWDYSLCKRAIDENCFF------SDEVPDRWGDCIAARNLGITTFLST 112 Q + + AI EN D W A + G + Sbjct: 467 LQGAQMSVDEASPLGRGPTGTAIRENRPVWCQDYQHDTATRPWHQIGA--SYGWGASAAL 524 Query: 113 PIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 P+ +G G +S+ + + + +L A I+ + + + Sbjct: 525 PLR-RNGVAIGAFTLYNSDINGFDDESRTLLTEMATDISFALDNFERETLRKRLELQIE 582 >UniRef50_B1XYS1 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XYS1_LEPCP Length = 784 Score = 347 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 82/342 (23%), Positives = 143/342 (41%), Gaps = 13/342 (3%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIM-FARNSQKM 62 ++ V +L +++ L ++ + ++++ + VD + ++ + + ++ Sbjct: 163 ELQGPVLGALVRDRPLAEVMALVCTQVQILAPDVVATVLGVDDDGLIRPLAGPSIPAEVS 222 Query: 63 YIPENFTVSWDYSLCKRAIDENCFFSD---EVPDRWGDCIAARN-LGITTFLSTPIHLPD 118 + + C A + W D LG+ S+PI + Sbjct: 223 CQFDGAPIGPKAGSCGTAAWRGSPVVVTDIDTDPLWDDYRHVVQPLGLRACWSSPIKNGE 282 Query: 119 GSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDS 178 G T E R EQ++++ L + + ++A + +Y D Sbjct: 283 GRVLATFAFYFREPRAPHGLHEQLVEMSVHLCTLAL-------ERERSHAHIHQLAYYDG 335 Query: 179 LTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGER 238 LTGLPNR + NL + A+ + + FIDLD FK +ND GH GD L +V +R Sbjct: 336 LTGLPNRALLQANLARAITQAQQDGTTLALLFIDLDRFKDVNDSHGHAVGDELLREVAQR 395 Query: 239 LNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASL 298 L ++ ++ RL GDEF+VV + ER+QQ + +GD+DL GA L Sbjct: 396 LAGEVRDRSLVCRLAGDEFVVVLPHCGVEQARHTAERVQQALARPITVGDLDL-TTGACL 454 Query: 299 GIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 G+ + +D D L AD AMYQ KK + ++ Sbjct: 455 GVAMYPDDGSDLDRLLRHADAAMYQAKKDGRGGLHFYRAEMN 496 >UniRef50_B9Z8G8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z8G8_9NEIS Length = 887 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 76/332 (22%), Positives = 122/332 (36%), Gaps = 27/332 (8%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 V + ++ + E + L V D + D R+ + A Y P Sbjct: 315 VVEDISARKQSEEAQQLAL----TVFDSMLEGVIITDHHRRILAVNAAFGEITRY-PVEA 369 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + L + A + F+ L G + G L Sbjct: 370 LLGRTPPLWRTAHQDAAFYRRIWRQ---------------------LLASGRWEGELWHR 408 Query: 129 SSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + + + ++ G QY+ + QL+++ L ++ D LTGLPNR Sbjct: 409 KRDGTPFPLWLSISCVRDEQGRPRQYVFVFNDISQLKDSQEQLERLAHYDPLTGLPNRHL 468 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 L AR + + FIDLD FK IND GH +GD L+ + +RL+ + + Sbjct: 469 ALARLEHALERARRHAFPLAVMFIDLDRFKTINDSLGHQAGDELLVAIAQRLHQRLRQED 528 Query: 248 VIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPET 307 + RLGGDEFLVV ++S+ + + + + Y GAS+GI + Sbjct: 529 TLARLGGDEFLVVIEEAPVQQVASIAHALLKVVDQPFGFSGGGEAYVGASIGISLYPGDG 588 Query: 308 TDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 A + AD AMY K +L Sbjct: 589 RSASELIRNADAAMYLAKAQGSNAYRFYTESL 620 Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 12/170 (7%), Positives = 46/170 (27%), Gaps = 21/170 (12%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 ++ V Q ++ +++ + +R+ ++ + + + + ++ + Y Sbjct: 184 LVLGVLQDISVQKAQDDALREREQLFRGTFEQAAVGIAHLGLDGHWIRVNQRLCDILGYS 243 Query: 65 PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGT 124 E D D + + P + + Sbjct: 244 REELL--------------RLTLQDITHPADQDSDLVMTRRLLSG-EIPSFSIEKRYR-- 286 Query: 125 LCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 + W+ +++ G +I + +++ A + Sbjct: 287 ---QRRGQLVWANLTAALMRDEGGRPEYFILVVEDISARKQSEEA-QQLA 332 >UniRef50_Q1GXZ6 Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC and GAF sensor(S) n=2 Tax=Proteobacteria RepID=Q1GXZ6_METFK Length = 1238 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 73/348 (20%), Positives = 130/348 (37%), Gaps = 39/348 (11%) Query: 7 ARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEA----RLQHIMFARNSQKM 62 + ++ + E ++ L + + D+ + + D E R+ + A Sbjct: 657 SHIAGIAIERHHSEEQLKLLETSIARLNDIVL--IAEADSEGKQNPRIIFVNKAFERLMG 714 Query: 63 YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGS-F 121 Y E + D + + L G Sbjct: 715 YTAEEV-LGKDPGFLDGPNTQ----------------------MEELWRVKALLKQGESV 751 Query: 122 YGTLCAASSEKRQ-WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLT 180 L + W E + AG+ ++ + + + + A + + ++ D LT Sbjct: 752 RTELVNYRKNGEEIWLEMDILPIANSAGVFTHWVSVQRDITERKAAESRIQHLAFYDMLT 811 Query: 181 GLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLN 240 LPNR + + L + L + F+DLDNFK +ND GH+ GD+ L QV +RL Sbjct: 812 NLPNRLLLLDRLEQALLNSMRLKRSGALLFLDLDNFKTLNDTHGHDFGDMLLEQVAQRLL 871 Query: 241 TLQQNGEVIGRLGGDEFLVVSLNNEN------ADISSLRERIQQQIRGEYHLGDVDLYYP 294 + + + RLGGDEF+VV N + S + ++I + + L + +Y Sbjct: 872 NSVRITDTVARLGGDEFVVVVENLSEQGCNAAQEASLVADKILLALSQPFRLSGYE-HYS 930 Query: 295 GASLGIVEVDPETT-DADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 S+G+ E D L AD+AMY+ K + T PA+ + Sbjct: 931 SCSIGVALFCNEQQVTVDELLKRADLAMYEAKAAGRNTFRFFDPAMQA 978 Score = 90.1 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 5/173 (2%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQH-IMFARNSQKMYI 64 + + +A L+ ++ + +LE + +D I + + Sbjct: 511 QRHLLERIAAGAVLDDVLLATVTLLEEQYPDLMFSIMLLDKANAFARGIALRLPKRYLDK 570 Query: 65 PENFTVSWDYSLCKRAIDE--NCFFSDEVPDR-WGDCI-AARNLGITTFLSTPIHLPDGS 120 + + C A E +D D W + AR G+ S PI + Sbjct: 571 LKGLQIGPAAGSCGTAAYERRTVVVADIQQDLLWRNYRDLARRFGLRACWSMPILSSNQQ 630 Query: 121 FYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQ 173 GT S E R +R +++ + + I++ EQL+ ++ Sbjct: 631 VLGTFAVYSREVRVPEQREMELVSACSHIAGIAIERHHSEEQLKLLETSIARL 683 >UniRef50_A0LAF7 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LAF7_MAGSM Length = 951 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 67/335 (20%), Positives = 135/335 (40%), Gaps = 29/335 (8%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 ++ + + E + + + V S + + + ++ + A ++ Sbjct: 368 GALLNIHEARETEQQL----LLAKQVVQTASEAIVITNHKNQIMDVNPAYERITGFMRHE 423 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 + + + + + F++ W + +G + G + Sbjct: 424 V-LGRNPKITQSGRHDASFYAT----MWKH-----------------LVGEGHWSGEIWD 461 Query: 128 ASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 + + A ++ G+I+ ++ + + + L + D LT LPNR Sbjct: 462 RRRNGEIFPKWLAISAIRNRQGVISHFVGVFNDISRQKSTEQQLERLVFYDPLTQLPNRV 521 Query: 187 AIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNG 246 + L +A N + + +DLD FK+IND GH GD L+QV +RL + Sbjct: 522 LFRDRLIHEVGVAERSNKLMSLLLVDLDRFKIINDTLGHGVGDELLLQVSKRLIASVRKS 581 Query: 247 EVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDP 305 + + RLGGDEF ++ E D + + E I Q++ + + + +L+ GAS+GI Sbjct: 582 DTVARLGGDEFAIILPGMERAEDAAHVAETIINQLQVPFSIEENELFV-GASIGIAVHGQ 640 Query: 306 ETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + D DS AD AM++ K+ + T P ++ Sbjct: 641 DGDDYDSLTMNADAAMFKAKESGKGTYKFFTPDMN 675 >UniRef50_C7LTY3 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LTY3_DESBD Length = 1075 Score = 347 bits (891), Expect = 3e-94, Method: Composition-based stats. Identities = 75/333 (22%), Positives = 135/333 (40%), Gaps = 29/333 (8%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 V + + + E + + V + + + E ++ + Y + Sbjct: 504 VVRDITVAKKAEEKL----LLAAKVFENTVEGIVVTNTEGTIEQVNPGFTVITGYSADE- 558 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 V + + K F+ + W DG + G + Sbjct: 559 AVGSNPRILKSDRHAQHFY----QEMWTK-----------------LTQDGHWAGEIWNR 597 Query: 129 SSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + + E ++ AG Y+ + +L+ AL Q+ D+LTG+PNR Sbjct: 598 RKDGESYPEWLTISAVKNEAGQTTNYVSIFHDITELKRQQDALEYQAQHDALTGMPNRIL 657 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + + L + K+ + F DLDNFK IND GH GD L+ + RL L ++G+ Sbjct: 658 LGDRLRMALAQLARSGGKLALLFFDLDNFKTINDGLGHGVGDELLVDLSRRLERLLRSGD 717 Query: 248 VIGRLGGDEFLVVSLNNENADIS-SLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 + RLGGDEFL++ E+ D + + R+ ++ +H GDV+ Y+ AS+G+ + Sbjct: 718 TLARLGGDEFLILLPEIESVDAASHIATRMLDALKAPFHHGDVE-YFVTASIGLTIAPDD 776 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 +A + AD+AMY+ K + P + Sbjct: 777 GNEAPKLIKNADMAMYRAKSMGRNNYQYFTPEM 809 >UniRef50_C4T5P6 Phosphodiesterase n=8 Tax=Yersinia RepID=C4T5P6_YERIN Length = 865 Score = 347 bits (891), Expect = 4e-94, Method: Composition-based stats. Identities = 80/347 (23%), Positives = 145/347 (41%), Gaps = 15/347 (4%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 M + + +V ++L KE+ LE ++ L +E + + + +V + L H+ A + Sbjct: 266 MYEVLQYKVLEALVKERPLEEVMSLLCHEVERIAPEVTASILQVSGQNHLNHL-AAPSLP 324 Query: 61 KMYIPE--NFTVSWDYSLCKRAIDENCFFSD---EVPDRWGDCI-AARNLGITTFLSTPI 114 +Y + C A W G S+PI Sbjct: 325 LIYTAALACVPIGPISGSCGTAAFRKEPVEVRDIATNPLWESYRHLILPYGWLACWSSPI 384 Query: 115 HLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 G+ GTL E R SE Q+++L A L + + + +++ + + Sbjct: 385 MSSQGNVLGTLAFYYKEVRGPSEFHIQLVKLIANLCSLAM-------EREQSHKQIQRLA 437 Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 + DSLTGLPNR +LA N+ + + I+LD FK +ND G +GD L Sbjct: 438 FYDSLTGLPNRTQFLIYAKQALALATETNYTLAVLVINLDRFKQVNDSLGLAAGDELLAL 497 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYP 294 + +RL + ++IGRL GDEF+++ + E++ + + V++ P Sbjct: 498 IAQRLRSEMSKDDIIGRLSGDEFIIILAPCTMQQATVKVEKMLSLLSQPCQIASVNI-IP 556 Query: 295 GASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 AS+GI + D+ ++ ADIAM++ K + +++ Sbjct: 557 SASVGISLYPENGLEMDALMNHADIAMHKAKDMGRGHFNFFSAEMNT 603 >UniRef50_A1KA22 GGDEF/EAL/PAS/PAC/GAF-domain containing protein n=1 Tax=Azoarcus sp. BH72 RepID=A1KA22_AZOSB Length = 1006 Score = 347 bits (891), Expect = 4e-94, Method: Composition-based stats. Identities = 79/341 (23%), Positives = 136/341 (39%), Gaps = 18/341 (5%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEAR-LQHIMFARNSQK 61 D + R Q A+ L + + E +T+ + + VD E R ++ A Sbjct: 412 DFALDRFEQD-AERARLAAAIVDSEEKYRELTESINDVIWTVDPETRCFSYVSPAMRRLS 470 Query: 62 MYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSF 121 Y P + L K P+ + L + F D S Sbjct: 471 GYAPHELIDAPIERLLK-------------PEYVAEMRERMALHLAEFHVGKRKSEDYSV 517 Query: 122 YGTLCAASSEKRQWSERAEQV-LQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLT 180 W+E + L +G + + + + R A A + ++ D LT Sbjct: 518 EEVELGRRDGGTVWAEVVTTLGLNRRSGRVE-FRAVARDISERRAAEAEIQRLAHYDQLT 576 Query: 181 GLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLN 240 GLPNR + + SL + ++ + F DLD+FK IND GH+ GD L++V RL Sbjct: 577 GLPNRSLVKDRFRYAASLTQRRRGQLAVMFFDLDHFKNINDTLGHDFGDRLLVEVARRLE 636 Query: 241 TLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGI 300 ++ + G+ + RLGGDEF+ + + + + + ++ + + L +L S+GI Sbjct: 637 SVLRGGDTVCRLGGDEFVFLLPDTDAEGAARVAAKLLEAVAQPLVLDHQEL-TVTPSIGI 695 Query: 301 VEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + TD D+ AD AMYQ K+ + A+ + Sbjct: 696 AMYPDDGTDFDTLSRNADAAMYQAKREGRNGFRFFTEAMQA 736 Score = 47.4 bits (112), Expect = 8e-04, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 46/169 (27%), Gaps = 23/169 (13%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 + V A+ ++ + + L D L ++D E R + R +Q Sbjct: 107 LFGGVLLLRARVRARTRELEGVNRQLGATLDAIPDLLFEMDGEGRYLAVHANREAQLQRP 166 Query: 65 PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGT 124 E + + C A G ++ G Sbjct: 167 VEALLGRRVDEVLPAPAAQTCL---------AALAEAGRHGWSS----------GQ---Q 204 Query: 125 LCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQ 173 + + QW E + + G A +I + R A A++ Sbjct: 205 IEITIDNQPQWFELSV-ARKADDGGPAHFIVLSRDITARRRAEASVQRL 252 Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 67/177 (37%), Gaps = 16/177 (9%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 +++ +Q++ + S + L+RQ+ + +M+ ++ +D + H A Y+ Sbjct: 259 LSQCNQAIVRCASQDDLLRQICHDAVVFGEMKMVWIGLLDERDGMVHPAAAYGDGTEYL- 317 Query: 66 ENFTVSWDYSL------------CKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTP 113 + +++D + + + F +D W + A G + P Sbjct: 318 DGIRIAFDSASPFGRGPSGSALRLDKPVWCQDFANDPATSAWHERGA--RHGYRASAALP 375 Query: 114 IHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAAL 170 + G +G L + E + E A+++L A I + + + AA+ Sbjct: 376 L-HRGGKVFGVLNLYAGECHAFDEAAQRLLVEMAMDIDFALDRFEQDAERARLAAAI 431 >UniRef50_Q39SC6 Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(S) n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39SC6_GEOMG Length = 821 Score = 347 bits (890), Expect = 4e-94, Method: Composition-based stats. Identities = 65/335 (19%), Positives = 127/335 (37%), Gaps = 25/335 (7%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 + + ++ + + V + + + + + ++ +D R+ + + Sbjct: 242 IREQESRRRRATAKVVESEKRYRTLVENVNMGISLIDGNNRIV------------MNNGY 289 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 ++ C+ E D D L + + Sbjct: 290 LEKMFRKNAEKLTGRFCYQEFENRDECCDN----------CLGVEAMTTGRAVSREVERI 339 Query: 129 SSEKRQWS-ERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + + + G ++I+ + + A + +Y DSLTGLPNR Sbjct: 340 LDDGEPSGLRLSAFPVFNEQGKATKFIKVVEDITDRKRAEEKIRRLAYYDSLTGLPNRPL 399 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + + L+ AR + + F+DLD FK +ND GH GD L +V RL+ + + Sbjct: 400 MMDRLSQAIRHARRHGEVVALLFLDLDRFKDVNDSQGHRVGDRLLQEVAARLSGCTRESD 459 Query: 248 VIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 + RLGGDEF++++ A D S L ++I + + L L+ S+GIV + Sbjct: 460 TLARLGGDEFVIIAPGVRAATDASLLADKILAALAEPFTLDRQTLHIAT-SIGIVLFPSD 518 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + + L AD+AMY K + +++ Sbjct: 519 GGNGEMLLQRADMAMYAAKDRGGNSYRFFSAEMNT 553 >UniRef50_C0N5Y8 Putative uncharacterized protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N5Y8_9GAMM Length = 1085 Score = 347 bits (890), Expect = 4e-94, Method: Composition-based stats. Identities = 69/340 (20%), Positives = 124/340 (36%), Gaps = 29/340 (8%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 D + V + + E +R V + + D + + A Sbjct: 370 DSELLLVVYDITVRKEAEEQLRFSSR----VFNQAQEGIIITDTSGTITDVNPAFCEITG 425 Query: 63 YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY 122 + E ++ + W + G + Sbjct: 426 FSREEVLGKGPD-----ILNSGKHSPEFFSKMWQS-----------------IIEHGYWQ 463 Query: 123 GTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTG 181 G + ++E + G ++ + + Q ++ L ++ D LT Sbjct: 464 GEVWNRRKNGELYAELLTISAITDDDGQSRHFVGLFSDITQTKQQQETLEMMAHYDVLTK 523 Query: 182 LPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNT 241 LPNR + + + + + I F+DLDNFK +ND +GH GD LI+V RL Sbjct: 524 LPNRVLFADRFSQAMAHSNRTETMLAICFLDLDNFKPVNDTYGHEVGDQLLIEVAVRLRK 583 Query: 242 LQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGI 300 ++ + I R GGDEF ++ + E+ + + RI + + Y++ D + AS G+ Sbjct: 584 NVRDEDTISRFGGDEFAILFRDIESQSECEFMLRRIHESLAQPYNVNDTRIDI-SASSGV 642 Query: 301 VEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 E D D+ L AD MYQ K + T + +PA + Sbjct: 643 TFYPQENADLDTLLRHADQTMYQAKLAGRNTYKLFNPAKN 682 >UniRef50_A0L914 Diguanylate cyclase/phosphodiesterase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L914_MAGSM Length = 1264 Score = 347 bits (890), Expect = 5e-94, Method: Composition-based stats. Identities = 72/334 (21%), Positives = 134/334 (40%), Gaps = 29/334 (8%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 + + + + + E +R + V + + + + E R++ + A Y Sbjct: 675 IVEDVTQRRRSEEALR----LAATVYESTNESVVIFNGEGRVEQVNQAFCRLSGYTAREV 730 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 L +++ F D +A G + G + Sbjct: 731 RGLELRHLLSARYEKSQF------DEMAQALALT----------------GHWSGEVMGQ 768 Query: 129 SSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + SE + +++ G I + + + + Q+ D LT LPNRR Sbjct: 769 RKQGALASERLSLSLVRRPDGSTQNTIAVFTDLTEQKAQEELIWRQANFDPLTSLPNRRL 828 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + L + A ++ + F+DLD FK IND GH +GD L + ER+N ++ + Sbjct: 829 FQDRLHQALAQADRSAGRVALFFLDLDRFKPINDTMGHQAGDELLQKCAERINAAVRSSD 888 Query: 248 VIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 + RLGGDEF V+ N +N D+S + E I + + ++L + S+G+ + Sbjct: 889 TVARLGGDEFTVILPNIQNGQDLSRIAEGIIKTLTEPFYLKAGEANIST-SVGVAVYPDD 947 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + D + + AAD A+YQ K H + +L+ Sbjct: 948 SQDDEGLMRAADAALYQAKDHGRNNVQFFTESLN 981 Score = 47.0 bits (111), Expect = 9e-04, Method: Composition-based stats. Identities = 18/172 (10%), Positives = 45/172 (26%), Gaps = 19/172 (11%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 +++ + + + E ++ + + + +D + R+ A Sbjct: 542 EMLIGTFRDIRARKQAELAIKASEARFRTLFASAALGMALIDAKQRVVDANPALMQMLEL 601 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 + L + A ++ D + + + L HL Sbjct: 602 SHHRDALPP---LAQLAHPQDQQEVAARLDAVIEGRSPQENCEVRCLCEARHLT------ 652 Query: 124 TLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSY 175 W+ + L + L + V Q R + AL + Sbjct: 653 ----------IWTRMVISPIVLESNLTPMVVVIVEDVTQRRRSEEALRLAAT 694 >UniRef50_A8FY98 Signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like protein n=1 Tax=Shewanella sediminis HAW-EB3 RepID=A8FY98_SHESH Length = 951 Score = 347 bits (890), Expect = 5e-94, Method: Composition-based stats. Identities = 69/334 (20%), Positives = 128/334 (38%), Gaps = 29/334 (8%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 + + + + E ++ V + +T D + + A ++ Y + Sbjct: 373 LILDITESKQAELKLKH----AASVFTHTNQGITITDTSGVIIEVNDAFSAITGYARDEV 428 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + + + + F+ +T DG + G + Sbjct: 429 -IGQNPRVLQSGRHSPEFY-------------------REMWAT--LQADGHWTGEIWNK 466 Query: 129 SSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + E + G + Y+ + ++E L ++ D+LT LPNR Sbjct: 467 RKNDEIYPEMLTISAVLDATGKVQNYVALFNDITAIKEHQEQLERIAHYDTLTNLPNRTL 526 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + + LT R + + F+DLD FK +ND +GH+ GD LI + RL ++ + Sbjct: 527 LADRLTQSMVQVRRRKSSLAVVFLDLDKFKDVNDAYGHDVGDKLLIVISRRLKEALRDID 586 Query: 248 VIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 + R+GGDEF+ V ++ E D + ER+ + G + + L AS+G+ + Sbjct: 587 TLARIGGDEFVAVLMDIEKGEDCEPVLERLLEAASGSVTVEGIMLKV-SASMGVAIYPQD 645 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 DAD L AD AMY K + + A + Sbjct: 646 GIDADQLLRHADQAMYVAKHEGKNCYHLFDTAQN 679 Score = 53.9 bits (129), Expect = 8e-06, Method: Composition-based stats. Identities = 19/176 (10%), Positives = 40/176 (22%), Gaps = 22/176 (12%) Query: 1 MSDQIIA--RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARN 58 + DQI+ + + + + +++ ML D + Sbjct: 236 LDDQILGYVGFIRDVTDRKKATTALQESTAMLSHHVQNTPLGCISWDSNLNCIEWNKSAE 295 Query: 59 SQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPD 118 Y P+ A+ E + D T S D Sbjct: 296 KIFGYSPDEVI--------GHALLEILVSEEIRDDINNIGKILFKGNKCTRSSNENITKD 347 Query: 119 GSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 G + E + G + + + ++A L + Sbjct: 348 G------------RTIICEWYSTPIVGVNGEVIGVTSLILDITESKQAELKLKHAA 391 Score = 40.4 bits (94), Expect = 0.082, Method: Composition-based stats. Identities = 13/177 (7%), Positives = 39/177 (22%), Gaps = 31/177 (17%) Query: 11 QSLAKEQSLESLVRQL-------LEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 + + + + + + + + + D + I Y Sbjct: 114 RDIHERKEALLALHAAKSASVNNENLFNSIFNGVTDACIFADSNRNIVSINQGFELMMGY 173 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 + + + + + + + + DGS Sbjct: 174 GIDELEGKTASII----YESDEEYERQGRIHFNLAAKEKVTPYEANY----RHKDGSII- 224 Query: 124 TLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREA----NAALIAQSYT 176 E + V++ I Y+ V ++A + S+ Sbjct: 225 -----------VGETSRIVIRTLDDQILGYVGFIRDVTDRKKATTALQESTAMLSHH 270 >UniRef50_A8FYM5 Signal transduction protein containing a membrane domain an EAL and a GGDEF domain-like protein n=1 Tax=Shewanella sediminis HAW-EB3 RepID=A8FYM5_SHESH Length = 1055 Score = 347 bits (890), Expect = 5e-94, Method: Composition-based stats. Identities = 70/336 (20%), Positives = 123/336 (36%), Gaps = 30/336 (8%) Query: 7 ARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPE 66 RV+ L ++ + + + EM V + + D E ++ + A Y Sbjct: 480 NRVALELQRQSTHKEM-----EMAASVFKESAEAIVICDSEDKILRVNPAFYKITGYSQI 534 Query: 67 NFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLC 126 L ++ + E + D + + Sbjct: 535 EVVGQSPQLLQSDRPIQSMLHNREAALKKNDI----------------------WQCEVS 572 Query: 127 AASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNR 185 + ++ G Q I + + + + + ++ DSLT LPNR Sbjct: 573 GYRKNGEHFLSWQTVIPVKDENGDTQQIIYIFSDITERKLFEEHIYNLAHHDSLTQLPNR 632 Query: 186 RAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQN 245 A + T A+ ++ + FIDLD+FK+IND GH GDL L QV ER + Sbjct: 633 VAFQLQMNTALERAKRSKTQMAVMFIDLDHFKMINDTSGHPVGDLLLQQVAERFKRALRK 692 Query: 246 GEVIGRLGGDEFLVVSLNNENADISS-LRERIQQQIRGEYHLGDVDLYYPGASLGIVEVD 304 +VI R GGDEF V+ N + ++ + ++ + L ++ AS+GI Sbjct: 693 EDVISRFGGDEFTVLLSNTRTDNATTVVARKLLACFYEPFKLPSSEV-VISASIGIGVFP 751 Query: 305 PETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 DS + AD AMY+ K+ + ++ Sbjct: 752 DNGDSVDSLMMNADSAMYRAKEKGRNCFQFYTKEMN 787 >UniRef50_C5V279 Diguanylate cyclase with PAS/PAC and GAF sensors n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V279_9PROT Length = 462 Score = 347 bits (890), Expect = 5e-94, Method: Composition-based stats. Identities = 68/335 (20%), Positives = 126/335 (37%), Gaps = 27/335 (8%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 ++D ++A + L+ + + + L++ + + S + D + + + A + Sbjct: 150 LADSVMAHLDLRLSHREIRKYV--DDLQLAASIFESASEAVLVTDPQNHIITVNPAFTAM 207 Query: 61 KMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGS 120 Y LC A + G Sbjct: 208 TGYSLSEVAGKNPNILCSG----------------KQSPAFYQRMWQSLADM------GH 245 Query: 121 FYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSL 179 + G L ++E + VL G Y+ + V + ++A+ + Q+ D L Sbjct: 246 WSGELWNKRKNGELFAEWLSINVLFNEDGSKRMYVAIFSDVTEKKQADEIIWRQANYDML 305 Query: 180 TGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERL 239 T LPNRR + L A + + FIDLD FK +ND GH +GD L++V ERL Sbjct: 306 TQLPNRRLFCDRLEHEIRGAHRAGCLLALLFIDLDLFKEVNDSLGHEAGDALLVKVAERL 365 Query: 240 NTLQQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASL 298 + + + R+GGDEF + ++ D+ + I + + + + + AS+ Sbjct: 366 TASVRESDTVARMGGDEFTAILPQIDSLEDVERVAALIVKALSEPFEVNGA-IVNISASV 424 Query: 299 GIVEVDPETTDADSALHAADIAMYQEKKHKQKTPF 333 G+ + + L AD AMY K+ + Sbjct: 425 GVAIYPRDAKNTTELLSQADSAMYVAKEQGRGCYR 459 >UniRef50_A4G4R7 Putative uncharacterized protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G4R7_HERAR Length = 859 Score = 346 bits (889), Expect = 6e-94, Method: Composition-based stats. Identities = 67/335 (20%), Positives = 124/335 (37%), Gaps = 28/335 (8%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 + + E +R+L + +E S + D+ +++ ++ Y + Sbjct: 291 HFLAIAIERKQSEVFMRKLSQAVEQ----SSNAIIITDLNGTIEYANTTFSTNTGYALHD 346 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 D W S+ G Sbjct: 347 IIGKKPN-----MHKSGKTSRATYADMWAH-----------------LGRGESWQGEFIN 384 Query: 128 ASSEKR-QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 + ++ G I Y+ E + + A A + + ++ D LTGLPNR Sbjct: 385 RRHNGEERIDLVRVSPVREADGRITHYLAIEEDITNQKNAQARIESLAHFDVLTGLPNRA 444 Query: 187 AIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNG 246 + E LA + + F+DLD+FK IND GHN GD L+++ +RL + + Sbjct: 445 LLDERAQRALRLAEEDQATLAVMFLDLDHFKNINDTLGHNLGDTLLVELAQRLRAVLRRD 504 Query: 247 EVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 + + RLGGDEF+++ + + + + I Y +G +L AS+GI + Sbjct: 505 DTLSRLGGDEFVLLLPGANRESAKKIAQELMRAINEPYRIGSHELNVM-ASIGIAVYPAD 563 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 D ++ AD+AMY+ K+ + + + Sbjct: 564 GMDFETLCKNADVAMYRAKQEGRNAYRSFTQEMQA 598 Score = 85.1 bits (210), Expect = 3e-15, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 56/170 (32%), Gaps = 12/170 (7%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP--E 66 + + + E L ++ ++ E + + D + + + A + YI + Sbjct: 147 MLELITSELPLPDILVNVVRQFEQLIPGSMCSIMLHDKDNKRLRLGAAPSLPTSYITTLD 206 Query: 67 NFTVSWDYSLCKRAIDENCFFSDEVP--DRWGDCI-AARNLGITTFLSTPIHLPDGSFYG 123 +S D I+ + ++ WG A+ +GI S PI G Sbjct: 207 CMPLSPDGGCVNAVINGVRTIATDIANDPNWGKFRQQAKEMGIGACCSEPIFSASAQILG 266 Query: 124 TLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQ 173 L E Q SE Q+L+ ++ + +++ + Sbjct: 267 ALTVYHREPFQPSESDLQLLE----TATHFLAIAI---ERKQSEVFMRKL 309 >UniRef50_A4VKZ2 Sensory box protein/GGDEF domain protein n=1 Tax=Pseudomonas stutzeri A1501 RepID=A4VKZ2_PSEU5 Length = 886 Score = 346 bits (889), Expect = 7e-94, Method: Composition-based stats. Identities = 73/339 (21%), Positives = 131/339 (38%), Gaps = 35/339 (10%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 +S+ + + E L + + + D + R+ + A + Y Sbjct: 308 LSRDITDRVNTE-----LERRIAAIAFESQQGMLITDAQNRILRVNGAFSRISGYSAAE- 361 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + +L F+ + S+ G + G + Sbjct: 362 AIGQTTALLASGRHGPDFY-------------------RSMWSS--IEATGVWEGEIWNR 400 Query: 129 SSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + E ++ G + Y+ + + A + ++ D LTGLPNRR Sbjct: 401 RKSGEIFPEWLTISAVRNVHGEVTHYVAAFTDITDRKAAEERIHNLAFYDPLTGLPNRRL 460 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + + L +++R N + FIDLDNFK IND GH +GD L ERL+ + + Sbjct: 461 LLDRLHQAMAVSRRSNQLGALMFIDLDNFKNINDLHGHQTGDQVLRVAAERLHAEVRASD 520 Query: 248 VIGRLGGDEFLVVSLNNEN------ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIV 301 ++ RLGGDEF+V+ N + A + ++ + Y L ++ LY AS+G+V Sbjct: 521 MVARLGGDEFVVMLENLGDDPLRAAAQAEHIGMKLLNSLDRSYRLNELGLY-SSASIGVV 579 Query: 302 EVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 E +D + AD++MY+ K + P + Sbjct: 580 LFGGEACSSDELMKRADMSMYEAKISGKNALRFFDPRMQ 618 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 41/169 (24%), Gaps = 24/169 (14%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 + L + +E +R L +T L +D + R I+ A S P Sbjct: 183 LLNDLLERDRIEQALRFSEARLRAITQAIPDLLLVLDEDGRYLEILCAERSLLYDEPSKL 242 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + + A +E F D S P F G Sbjct: 243 LGRRLHDVMPEA-EERRFLGFIQQTLNSDSPQLIEY------SLPTLGGPKVFEG----- 290 Query: 129 SSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQL--REANAALIAQSY 175 L+ G + + E + A ++ Sbjct: 291 ----------RALPLEQPPGQKRAVVWLSRDITDRVNTELERRIAAIAF 329 >UniRef50_C6BWZ0 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BWZ0_DESAD Length = 716 Score = 346 bits (888), Expect = 7e-94, Method: Composition-based stats. Identities = 68/347 (19%), Positives = 128/347 (36%), Gaps = 39/347 (11%) Query: 9 VSQSLAKEQSLESLVR--------------QLLEMLEMVTDMESTYLTKVDVEARLQHIM 54 + + + + E +R + L++ V S +T D +++I Sbjct: 128 IGRDITSHKETEEELRKAKDQLKITVDQQTEQLKLATAVFKHSSEGVTITDSNNNIRYIN 187 Query: 55 FARNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPI 114 A Y E + + S+ K + F+ W Sbjct: 188 DAFTHITGYSEEEV-IGQNPSILKSNRHKPSFY----KGVWKSIKT-------------- 228 Query: 115 HLPDGSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQ 173 +G + G + + E + + + G + YI + + + + + Q Sbjct: 229 ---NGMWEGEIWNRRKNGEVFPEWISIKAITDVKGEVVNYIAVFRDISEAKASQRKIQHQ 285 Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 +Y D+LTGLPNR + + + + + I + FIDLDNFK IND G+ GD L Sbjct: 286 AYHDALTGLPNRTLLIDRIRKAIASSNDRKSCIALLFIDLDNFKNINDSLGYVIGDSVLQ 345 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLY 292 Q R+ + + R+GGDEF+++ + + D + + + I + + Sbjct: 346 QAAARIREFIDEKDTVSRIGGDEFVIMLKDLQDKHDAAVMADTIINLFAQALTVESHQ-F 404 Query: 293 YPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 S+GI + S + AD AM + K+ + + P L Sbjct: 405 TITPSIGIALYPEDGKTPYSLVRNADTAMNKAKQEGRNRYHLFTPGL 451 Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 34/139 (24%), Gaps = 22/139 (15%) Query: 34 TDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPD 93 + T+VD + R ++ + PE C + ++ Sbjct: 26 IENTDDLFTQVDTDGRFLYVNPSAQKYFGLPPEK---------CVGLSIFDFIHPEDKET 76 Query: 94 RWGDCIAARNLGITTF-LSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQ 152 D + T F +GSFY L ++ I Sbjct: 77 TAQDFNKWQKDPSTNFSYINRQMHLNGSFYYMLW------------TITAVKDSEQKILW 124 Query: 153 YIQKEALVEQLREANAALI 171 + + +E L Sbjct: 125 FNCIGRDITSHKETEEELR 143 >UniRef50_A1TZQ7 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=5 Tax=Gammaproteobacteria RepID=A1TZQ7_MARAV Length = 819 Score = 346 bits (888), Expect = 7e-94, Method: Composition-based stats. Identities = 77/339 (22%), Positives = 136/339 (40%), Gaps = 25/339 (7%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 +Q+ R+ + + + E+ +R+ + + D + + D + R+++ + Sbjct: 238 NQMRERLIDDVTRRERDEAEIRKFSKAI----DQSPSSVLICDRQWRIEYANRKFSQLTG 293 Query: 63 YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY 122 P SL +D + E W G + Sbjct: 294 NSPSEIIGKHPSSLIDPGVDSH-----EARQLWKSIRLQVQ-------------RVGVWQ 335 Query: 123 GTLCAASSEK-RQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTG 181 G + + R W + ++ G Y+ + + L+ Q+ D LTG Sbjct: 336 GEVNSTRKNGERYWEQLVVTPIKDNNGESTGYLILGEDISIRKRYEQQLLRQANYDILTG 395 Query: 182 LPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNT 241 LPNR + L + AR K+ + F+DLDNFK IND GH++GD LI+ R+++ Sbjct: 396 LPNRMLALDRLKLALAQARRDESKVGVMFLDLDNFKHINDTLGHDAGDTLLIEAARRISS 455 Query: 242 LQQNGEVIGRLGGDEFLVVSLNNENADI-SSLRERIQQQIRGEYHLGDVDLYYPGASLGI 300 + + RLGGDEFLVV D S + ERI + + L +++ S+GI Sbjct: 456 CLRGTSTVARLGGDEFLVVLPGLNGPDASSQVAERILKTFAPPFMLSGQEVFVTT-SIGI 514 Query: 301 VEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 ++ ++ + L AD AMY+ K + P + Sbjct: 515 ATFPDDSDNSGTLLQHADAAMYEAKHKGKSAYARFTPEM 553 >UniRef50_C6MET2 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MET2_9PROT Length = 753 Score = 345 bits (887), Expect = 9e-94, Method: Composition-based stats. Identities = 65/322 (20%), Positives = 119/322 (36%), Gaps = 25/322 (7%) Query: 20 ESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKR 79 + + + L + V + + + D + A + + E + Sbjct: 193 QQKINEQLYLSSKVFENSTEAIMIADANKIIISTNKALHIITGFTAEEVIGKPTSIVTSI 252 Query: 80 AIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSER- 138 F W G + G + R++ Sbjct: 253 RHSTKFF-----QKIWLSVK-----------------QSGHWQGEVWNRHKYGREYPAWL 290 Query: 139 AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSL 198 + G I Y+ + + ++++ + Q+ DSLTGLPNR ++ L+ Sbjct: 291 NISSVLSKKGSICYYLINFSNITDKKKSDEIIWRQANYDSLTGLPNRNMFYDRLSHDIKN 350 Query: 199 ARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFL 258 A + + FIDLD FK +ND FGH+ GD L++ +RLN + + + RLGGDEF Sbjct: 351 AARTGMLLAVLFIDLDRFKEVNDSFGHSVGDALLVEAAKRLNGCVRETDTVARLGGDEFT 410 Query: 259 VVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAA 317 ++ + + + I ++ +HL L Y AS+G+ + A+ + A Sbjct: 411 IILNGINDQHCAERIIQMILLELTKPFHLNAK-LAYVTASIGVTFFPADAGSAEILMKNA 469 Query: 318 DIAMYQEKKHKQKTPFVAHPAL 339 D AMY K + + + Sbjct: 470 DQAMYAAKNNGRNCCSYFTSNM 491 Score = 83.6 bits (206), Expect = 8e-15, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 58/171 (33%), Gaps = 12/171 (7%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 Q + + + + + ++ ++E + D + +D + + ++ A + Sbjct: 35 QFQQEILELIVLGNDYKEICEKICLLIEQLLDNAVASVMLLDRDKQCMNVFAAPSIPAEC 94 Query: 64 IPE--NFTVSWDYSLCKRAIDENCFF---SDEVPDRWGDCI-AARNLGITTFLSTPIHLP 117 I + + C A+ S RW A + I + S P+ Sbjct: 95 IAQLNGLRPGPEAGSCGNAVFRQEAVYIESTIDDPRWQSIRKIAIDFNILSCWSIPVRSK 154 Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANA 168 G G+ +S E R S ++L++ + +I ++ Q + Sbjct: 155 GGECIGSFALSSFEHRLPSAFHRKLLKIGSFIIGIALE------QQKINEQ 199 >UniRef50_Q1H236 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Bacteria RepID=Q1H236_METFK Length = 722 Score = 345 bits (887), Expect = 1e-93, Method: Composition-based stats. Identities = 64/356 (17%), Positives = 135/356 (37%), Gaps = 35/356 (9%) Query: 3 DQIIARVSQSL------AKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFA 56 ++++ + ++ + +S+ + + + + + + + +D I Sbjct: 109 EELLHTIENAIEKSRLETQNRSIHARLEESENLYRYLVNSSPDIIYTLDDSGHFTFINHR 168 Query: 57 RNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHL 116 + Y E SL + E + D + T + + Sbjct: 169 VETLLGYRRE--------SLIGKHYTEIIYSDDFDRASYAFNERRTGNRATRNIELRLKC 220 Query: 117 PDGSFYGTLCAASSEKRQWSERAEQVLQLFAGL----------IAQYIQKEALVEQLREA 166 D S+ R + V+ G + + ++ Sbjct: 221 KD---------LESDIRHFEINFITVVLNATGTYGGTHESGTPFSGTYGVARDISDRKKV 271 Query: 167 NAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHN 226 + Q+Y D+LTGLPNR + L + A+ ++ I F+DLD FK +ND GH Sbjct: 272 EEVITRQAYHDTLTGLPNRALFKDRLNVALNHAKRNQQQLAIMFLDLDRFKWVNDTLGHF 331 Query: 227 SGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYH 285 GD L V +RL+ + + + R+GGDEF ++ + + D S + +I +++ + Sbjct: 332 YGDELLKHVAQRLSGCLRAQDTLARMGGDEFTLLLHDLQQPEDASLVAAKIVDELKRPFL 391 Query: 286 LGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 L + +++ S+GI ++ + +ADIAMY K + ++++ Sbjct: 392 LDEREIFISS-SIGIALYPDHGDTIETLIKSADIAMYHVKWRGKNGYQYYEASMNA 446 >UniRef50_Q1K2Z8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K2Z8_DESAC Length = 1288 Score = 345 bits (887), Expect = 1e-93, Method: Composition-based stats. Identities = 73/346 (21%), Positives = 138/346 (39%), Gaps = 31/346 (8%) Query: 3 DQIIARVSQSLA------KEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFA 56 Q++ + Q +A + + ++ + L++ V D + D ++ + A Sbjct: 702 QQLLDELVQDVAFALDVHEHEQQQAFSMKQLQLAATVFDNSREGIVLTDKNEKIVSVNRA 761 Query: 57 RNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHL 116 + Y + R + N D + W L+ Sbjct: 762 FSDITGYRDDEVLGQTP-----RILKSNRHGRDFYQNMWH------------CLA----- 799 Query: 117 PDGSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSY 175 G + G + + + + E + + ++ YI + Q +E+ L S+ Sbjct: 800 EHGCWQGEIWNRRKDGQVYPELMSMSAVCDDQQEVSHYIAVFTDISQAKESQEKLDYLSW 859 Query: 176 TDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQV 235 D LT LPNR +L A +H + DLD+FK +ND FGH GD L ++ Sbjct: 860 HDPLTDLPNRSLFCTHLDQAVKHAERKHHSFAVLCFDLDHFKDVNDSFGHLVGDALLRKI 919 Query: 236 GERLNTLQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYY- 293 +RL + + +++ RLGGDEF+++ + ++ ++ + E I Q++ L + DL Sbjct: 920 ADRLRSCLRESDMLARLGGDEFVLLLEDVADSHRVTMMAEEILHQLQQPICLTETDLEVQ 979 Query: 294 PGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 S+GI DA L AD A+Y+ K+H + + + Sbjct: 980 VSVSVGIAVYPEHGRDALELLQRADSALYRAKQHGRARFAYYNEEM 1025 >UniRef50_C6WYS6 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WYS6_METML Length = 934 Score = 345 bits (887), Expect = 1e-93, Method: Composition-based stats. Identities = 70/340 (20%), Positives = 125/340 (36%), Gaps = 28/340 (8%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLE---MVTDMESTYLTKVDVEARLQHIMFARNS 59 D ++A V + K + +RQ E + V D + D A + + +A Sbjct: 345 DTLMASVLEMRQKLRESIDTLRQNAERMRLSASVFDHAHDGIFITDPHANIVEVNYAFTQ 404 Query: 60 QKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDG 119 Y L + D + D + Sbjct: 405 ITGYTRNGALGRIPQELG------FVTYDDSLLDVLWLQAE----------------SNS 442 Query: 120 SFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDS 178 + G ++ ++ A + ++ + + Q +E L +Y D Sbjct: 443 EWRGETWCRRKNGDVYAAWLDIFCVRDEANQVKNFVGLFSDITQAKEQQQNLERMAYHDP 502 Query: 179 LTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGER 238 LT LPNR + + L + A + + +DLD FK +ND GH +GD L+Q+ R Sbjct: 503 LTQLPNRALLSDRLQQALARAERSGELLAVCCLDLDGFKPVNDTLGHEAGDYLLVQLAVR 562 Query: 239 LNTLQQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGAS 297 ++ ++ + + RLGGDEF V+ ++ + + ER+ I+ Y +GD + S Sbjct: 563 MSACLRDSDTVARLGGDEFAVLLCGLQSIDECTQTLERLLSVIKTPYSIGDKSVTVSS-S 621 Query: 298 LGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHP 337 +G + + D+ L AD AMYQ K + Sbjct: 622 IGYTIFPDDGCEPDTLLRHADHAMYQAKLNGGSRVQQFDS 661 >UniRef50_B8GQW3 Signal transduction protein containing a membrane domain an EAL and a GGDEF domain n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GQW3_THISH Length = 926 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 67/342 (19%), Positives = 121/342 (35%), Gaps = 27/342 (7%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 ++ ++ ++ ++ ++ V + S + + D + R + A Y Sbjct: 341 VLRGLTLDVSPQRQAALALKDSESRYREVIEHVSEVIFRTDHQGRWTLLNPAWEELTGYS 400 Query: 65 PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGT 124 R + E D + G Sbjct: 401 I--------AESLGRPVSEFVSAEDSPLLEALTNQLLHGNKSQLRDELRLLTRAGEP--- 449 Query: 125 LCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 +W + Q G + + + + A + ++ DSLT LPN Sbjct: 450 ---------RWVSVFVRSSQDAEGRVIATFGTLTDITERKRAEEEIRRLAFYDSLTELPN 500 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R +++ L + A H I F+DLDNFK IND GH+ GD L QV R+ + Sbjct: 501 RSLLYDRLRLAMASAARSRHHGAILFLDLDNFKDINDTLGHDVGDELLRQVASRMQGTIR 560 Query: 245 NGEVIGRLGGDEFLVVSLNNENADISSLRE------RIQQQIRGEYHLGDVDLYYPGASL 298 + + RLGGDEF+++ + + E ++ + + LG+ + + S+ Sbjct: 561 ETDTLARLGGDEFVIILNDLHPEQAQAAVEAETLGSKLLHLLAEPFRLGEHE-RHCTPSI 619 Query: 299 GIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 G + D L AD+AMY+ K + T P +H Sbjct: 620 GATLFGDGEVNVDELLKQADLAMYRAKDSGRNTLCFFEPEMH 661 >UniRef50_C6NZF1 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6NZF1_9PROT Length = 995 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 66/334 (19%), Positives = 123/334 (36%), Gaps = 19/334 (5%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 +S + E +R+ + + +V + ++ + M+ + Sbjct: 416 GISVDVTGRNQAEEALRESEARWSFALEGGGDCVWDWNVSNN--EVSLSKGGKGMFGFAD 473 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 + D S + D + + D S+ L Sbjct: 474 DEIGNDMSEWNARVHP----EDISRLLSRISDFFHSKADRFSAEYRVRCKDDSWKWILT- 528 Query: 128 ASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 R + G + + I + + + A + Q+ DSLT LPNRR Sbjct: 529 ----------RGMVAHRSTDGRVTRMIGTHTDLSERKLAEETIRRQANYDSLTQLPNRRL 578 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + L LA+ + IDLD+FK +ND GH++GD L+ +R+ + + Sbjct: 579 FRDRLEQTIRLAKRDQSSFALMLIDLDHFKEVNDTMGHDAGDFLLVDAAQRIQHCVRESD 638 Query: 248 VIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 + R+GGDEF+V+ + + +I + + I ++ + LG+ + AS+GI + Sbjct: 639 TVARMGGDEFVVILPDVNDPDNIERIAQNIITKLAAPFVLGEEKAFI-SASIGITLYPSD 697 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 ++ L AD AMY K + P L Sbjct: 698 ADSMETLLKNADQAMYVAKHLGRNRMSYFTPVLQ 731 Score = 54.3 bits (130), Expect = 7e-06, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 45/160 (28%), Gaps = 22/160 (13%) Query: 13 LAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSW 72 + + + +R+ L + D + V + R Q + F + Sbjct: 294 IRQHRRDGDALRESESRLHAILDHAPVGIWLVGKDGRYQFVNKRFCDATGIPESAFLATT 353 Query: 73 D-YSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 L I C SD+ +++ + + P+ DG + Sbjct: 354 HLPDLMGEQIAAACLASDQAC-------LSQDEPYVSVETLPLV--DGKLHQ-------- 396 Query: 132 KRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 E + L+ G + I V +A AL Sbjct: 397 ----LEVTKAQLRDSNGEVIGAIGISVDVTGRNQAEEALR 432 >UniRef50_Q47A14 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Dechloromonas aromatica RCB RepID=Q47A14_DECAR Length = 827 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 76/335 (22%), Positives = 125/335 (37%), Gaps = 31/335 (9%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 V +++ ++ ++ + V + D + R+ I A Y P Sbjct: 258 VYTDISERRASAER----EQLAQKVYSHTPAGIIFTDDQHRILSINPATTEMTGYEPFEL 313 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + L +DE D GS+ L Sbjct: 314 IGQTVFGLIS--LDEGISQKDFQEQ---------------------ISMRGSWSSELEVT 350 Query: 129 SSEKRQWSE-RAEQVLQL-FAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 + + +GL A Y+ A + + ++A + + D+LTGLPNR Sbjct: 351 QKNGSNFPAGARINRVDDPQSGLPAHYVWILADITERKQAEDRMRHIAQHDALTGLPNRL 410 Query: 187 AIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNG 246 A+ L L AR + + FIDLD FK+IND GH GD L +V RL+ L + Sbjct: 411 ALLMRLAQLLPEARRHGWTVAVMFIDLDRFKIINDTLGHQVGDEMLREVACRLSNLLRET 470 Query: 247 EVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDP 305 + + RLGGDEF+++ + AD + + +I + +L+ S+GI Sbjct: 471 DFVARLGGDEFVIILPSISSPADAAIVSGKIISALSTAIEAEGHELH-TSPSIGISIFPD 529 Query: 306 ETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + D D L AD AMY K + ++ Sbjct: 530 DGPDGDIVLKNADTAMYHAKAAGRNNYQFFAADMN 564 Score = 40.8 bits (95), Expect = 0.063, Method: Composition-based stats. Identities = 16/163 (9%), Positives = 39/163 (23%), Gaps = 21/163 (12%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVS 71 + ++ E+ +R L+ V + + ++ D L A E Sbjct: 134 DITDRKAAETALRTQHNQLQTVIESIPSAVSLFDSAGNLVLFNTAFPRLLDVPAELAKPG 193 Query: 72 WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 R + P++ I L P + Sbjct: 194 VSMETLFRFNAMRGEYGPGDPEK-----------IVATLMERAKNPSHHY---FERTRPN 239 Query: 132 KRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 + + + L G ++ + + R + + Sbjct: 240 GKT---LEVRGVPLAEG---GFVTVYTDISERRASAER-EQLA 275 >UniRef50_Q3A0D5 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A0D5_PELCD Length = 1141 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 61/343 (17%), Positives = 125/343 (36%), Gaps = 26/343 (7%) Query: 3 DQIIARVSQSLAKEQSLESLVR---QLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNS 59 ++ ++++ + ++ L+ +++ + + R ++ Sbjct: 539 EKTARQLAKEKHQRLRVQELIDNIDAAESRYQLLIENSLVGIFVYQ-HHRYTYVNPRFAE 597 Query: 60 QKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDG 119 Y PE A D+ + D + LG Sbjct: 598 IFGYTPEEIV--------DSAPQPQLVHPDD--QLFVDANNLKILGGVNA---------N 638 Query: 120 SFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSL 179 + + G A I + + +EA + ++ D L Sbjct: 639 HLRYEFVGLRKTGQPIDVEILIGRGISEGQPAL-IGSLLDITERKEAEKTIEHLAFHDPL 697 Query: 180 TGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERL 239 TGL NR + + + A + + F+DLD FK IND GH++GD L +V +RL Sbjct: 698 TGLANRLLFMDRIEQAIAHAHRHHESFALMFLDLDRFKTINDSLGHSAGDAALKEVAQRL 757 Query: 240 NTLQQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASL 298 T + + + R GGDEF V+ + +I + +I + + Y + D +++ S+ Sbjct: 758 TTCLRETDTVSRFGGDEFNVLLSGPSHEEEIELIAHKILKSLAWPYDINDHEVFM-TCSI 816 Query: 299 GIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 GI + +A + + AD A+Y+ K + ++++ Sbjct: 817 GIASYPKDGREAITLVKNADTALYRAKDLGRNNFQFYSSSMNA 859 >UniRef50_A0L7S5 Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L7S5_MAGSM Length = 571 Score = 344 bits (883), Expect = 3e-93, Method: Composition-based stats. Identities = 68/328 (20%), Positives = 129/328 (39%), Gaps = 29/328 (8%) Query: 11 QSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTV 70 + + ++ E ++ + + + L +D E + + A + Y E + Sbjct: 263 RDIRDQREKEERLK----LAAKIFNHSQEGLVVLDAERIIVDVNPAFSYITGYTREEV-I 317 Query: 71 SWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASS 130 L + + F+ W G++ G + Sbjct: 318 GRSPELLRSQRHDAAFY----QSIWQQAEN-----------------QGNWQGEIWRRRK 356 Query: 131 EKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIF 189 ++ E + +++ I+ YI + + + A L Q++ D LTGLPNR + Sbjct: 357 NGEEFPEWLSLSIIRGENQQISHYIGLFSDITTRKIAEEKLKHQAHHDPLTGLPNRSLLE 416 Query: 190 ENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVI 249 + L S AR KI + +IDLD+FK +ND +GH +GD L ++ R+ + + Sbjct: 417 DRLQQAVSKARRYEGKIAVLYIDLDHFKPVNDNYGHEAGDAVLREISARIRYELRQSDTA 476 Query: 250 GRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETT 308 R+GGDEF+ V + + +++ I+ + + + G S+GI Sbjct: 477 ARVGGDEFVAVLTEIREEHLVMGVAQKLIHAIQKPVNF-GNESFQVGCSIGISLYPIHGN 535 Query: 309 DADSALHAADIAMYQEKKHKQKTPFVAH 336 L +AD AMY+ K+ + VA Sbjct: 536 SITKLLKSADTAMYRAKQEGRNRFCVAT 563 Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 47/171 (27%), Gaps = 17/171 (9%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 +++AR +S+ K + VR + L +T L VD R+ + A Y Sbjct: 126 ELLAR-LRSIIKLERAMQQVRSSEKRLRDLTASLGEGLLSVDNAQRIIFLNPAGEKLLEY 184 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 + +L ++E C + + + + G Sbjct: 185 S--------ESALHLTTLNEQLI--------PHTCGSLHDQQSADHMLAALRGETEQISG 228 Query: 124 TLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 + + L ++ + + RE L + Sbjct: 229 ETLFRTRTGKLIPISFNAAPILDGHFLSGGVLSFRDIRDQREKEERLKLAA 279 >UniRef50_C5S8G6 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S8G6_CHRVI Length = 861 Score = 343 bits (882), Expect = 4e-93, Method: Composition-based stats. Identities = 73/343 (21%), Positives = 133/343 (38%), Gaps = 33/343 (9%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 + + + E +RQ + V + + D R+ + + Y Sbjct: 153 AVVETLRDRTSHKLAELRLRQ----MASVFEHSQEGIMITDPATRILDVNASFVRVTGYS 208 Query: 65 PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGT 124 E + +L K + + F+ W D G ++G Sbjct: 209 REE-ALGRTPTLLKSGLQDAAFY----RALWRD-----------------LNETGRWHGE 246 Query: 125 LCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLP 183 + + E +Q +G + YI + L+ + + L ++ D LTGLP Sbjct: 247 IWNRKKSGELYPEILHINAVQDPSGRVTHYIGMFIDITDLKNSQSRLENLAHYDVLTGLP 306 Query: 184 NRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQ 243 NR + L A+ + F+DLDNFKL+ND GH +GD LI +G RL Sbjct: 307 NRLLLGYRLRQALDDAQRHERLAAVCFLDLDNFKLVNDHHGHETGDRLLIDIGRRLRDTL 366 Query: 244 QNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVE 302 ++ + + RLGGDEF+++ + ++ ++ R+ + + + + S+G+ Sbjct: 367 RSNDTVARLGGDEFVILLNDLRNQEELDNVLVRLLDGVAHPVRIDALQI-VITVSVGVTI 425 Query: 303 VDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPA----LHS 341 + D D+ L AD AMYQ K+ + + P + S Sbjct: 426 YPLDDHDPDTLLRHADQAMYQAKQMGRNRYQLFDPEAANAMQS 468 Score = 43.5 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 16/151 (10%), Positives = 39/151 (25%), Gaps = 18/151 (11%) Query: 31 EMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDY-----SLCKRAIDENC 85 + + +D R+ A + S D+ C+ + + Sbjct: 36 AELLEQLVVPTFVLDATGRVIVWNRACENLTGMPASRVLGSQDHWRAFYPECRPCLADLV 95 Query: 86 FFS--DEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVL 143 + DE+ + + G +P GT ++ + Sbjct: 96 LHNRLDEIDHFYTEYDQLLRTGCEIHAENWCVMP---LQGT--------ERYLAIDAGPV 144 Query: 144 QLFAGLIAQYIQKEALVEQLREANAALIAQS 174 + +G I ++ + A L + Sbjct: 145 RDSSGRIIAVVETLRDRTSHKLAELRLRQMA 175 >UniRef50_B1Y3M1 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y3M1_LEPCP Length = 745 Score = 343 bits (882), Expect = 4e-93, Method: Composition-based stats. Identities = 71/345 (20%), Positives = 130/345 (37%), Gaps = 36/345 (10%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 ++ +++ + ES +R E + D ++ + A Y Sbjct: 170 PLLRIALTDISERKHAESELRLAATAFE-----AQEGMMITDAHGVIERVNKAFTQMTGY 224 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 + L + F++ + G++ G Sbjct: 225 SAAE-AIGQTARLLHSGRHDPAFYA-------------------AMWDS--LQRTGTWQG 262 Query: 124 TLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGL 182 + ++E +Q + +Y+ + Q + + ++ D LTGL Sbjct: 263 EVWNRRKCGEVYAEWLTITAVQDEHRTVTRYVGTMLDISQRKAREEEIAQLAFYDPLTGL 322 Query: 183 PNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTL 242 PNRR + + L +++ + + FIDLD+FK IND GH+ GDL L V +RL+ Sbjct: 323 PNRRLLKDRLNQAMAISARSQREGALLFIDLDHFKDINDTRGHDKGDLLLQNVAQRLSGC 382 Query: 243 QQNGEVIGRLGGDEFLVVS-------LNNENADISSLRERIQQQIRGEYHLGDVDLYYPG 295 + G+ + R+GGDEF+V+ + + S+ E+I + Y + + + Sbjct: 383 VREGDTVARIGGDEFVVMLGADLSTATDEAASHARSVAEKILAALNLPYLMSG-EFVHCS 441 Query: 296 ASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 ASLG+ + D L AD AMYQ K + T A+ Sbjct: 442 ASLGVALFNDHHDTVDELLKRADQAMYQAKAGGRNTLRFFDTAVQ 486 >UniRef50_C4ZJQ2 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Thauera sp. MZ1T RepID=C4ZJQ2_THASP Length = 1050 Score = 343 bits (881), Expect = 5e-93, Method: Composition-based stats. Identities = 69/335 (20%), Positives = 132/335 (39%), Gaps = 31/335 (9%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 ++ + + + E +R + V + DV+ R+ + A Y Sbjct: 465 LLTGAQIDIDRRKENEERLR----LAASVFSSSYEAILITDVDNRIVDVNPAFCRITGYS 520 Query: 65 PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGT 124 E ++ D + F+ + G Sbjct: 521 REE-SLGRDPGMLASGRQGREFY-------------------RAMWQA--IEEHDHWQGE 558 Query: 125 LCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLP 183 L + +++E + ++ G + ++ + + +L++ L +Y D LTG P Sbjct: 559 LWNRRKDGSEFAEVLSISRVRDARGRVIHHLAMFSDISRLKKHEEELNRIAYFDPLTGAP 618 Query: 184 NRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQ 243 NRR + + L + +R + + IDLD FK +ND+ GH +GD LI + +RL + Sbjct: 619 NRRLLDDRLRQAIAHSRRTGKPLAVCVIDLDGFKPVNDQLGHEAGDQVLIGIVDRLGAIL 678 Query: 244 QNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 + + + RLGGDEF+++ + E + ER+ + IR L + AS+G+ Sbjct: 679 RASDTVARLGGDEFVLLLEDIEGE---RVLERVLEAIRTPIALASQQVCV-SASIGVTLF 734 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPA 338 + D D+ L AD AMY+ K+ + + Sbjct: 735 PEDDADPDTLLRHADQAMYRAKQRGRNCIQFFDAS 769 >UniRef50_Q15SE8 Diguanylate cyclase with GAF sensor n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15SE8_PSEA6 Length = 515 Score = 343 bits (881), Expect = 5e-93, Method: Composition-based stats. Identities = 75/340 (22%), Positives = 143/340 (42%), Gaps = 15/340 (4%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 +QI + + +A L ++ ++ +E + VD + R + A + Sbjct: 170 NQIHNNILELIASSSKLSKILPAIINGIENEIPNALCSVLLVDRKGRRLLVGAAPSLPDY 229 Query: 63 Y--IPENFTVSWDYSLCKRAIDENCFFSD---EVPDRWGD-CIAARNLGITTFLSTPIHL 116 Y + ++ A + W D + + + S PI Sbjct: 230 YNLAIDGLSIGHGIGAWAEAAFSSKRVVVKDIASHPGWVDWTELTQKAHLASCWSEPIIG 289 Query: 117 PDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYT 176 +G G+ ++ ++++ F L I + +A+ + Q+ Sbjct: 290 NNGKVLGSFVIYFQKQYSPKNDELKLIEQFVNLTRIAI-------EREKADKLIWQQANY 342 Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 DSLT LPNR ++E+L + + A ++ +A +DLD FK +ND GH +GD+ L++ Sbjct: 343 DSLTYLPNRNLLYEHLASAMTQANREKKQLAVAMLDLDKFKAVNDTLGHAAGDIVLVECS 402 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPG 295 +R+ + ++ RLGGDEF++V + DI++L ++ + Y + D +Y Sbjct: 403 KRIKGCIRKSDIAARLGGDEFIIVLRDAISPEDIAALGRKLSDALAKPYFIQDESVY-CT 461 Query: 296 ASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVA 335 AS+GI + D D+ L AD AMY+ K + + Sbjct: 462 ASIGIAFYPNDAADMDTLLKNADQAMYKAKAKGRNSVHYF 501 >UniRef50_Q60BD0 Sensory box protein n=1 Tax=Methylococcus capsulatus RepID=Q60BD0_METCA Length = 1214 Score = 343 bits (880), Expect = 6e-93, Method: Composition-based stats. Identities = 81/343 (23%), Positives = 135/343 (39%), Gaps = 35/343 (10%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 +A + + + +++E+ +R E + + R+ + A + Y Sbjct: 639 VASLVDDITRREAVEAELRLAATTFET-----DEAILIAGADGRILRVNAAFSRITGYRQ 693 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 E+ V + L K + F+ + W G + G + Sbjct: 694 EDV-VGRNPRLFKSGLHGAEFY----REVWRSLE-----------------QTGRWQGEI 731 Query: 126 CAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 + ER ++ G I Y+ + + +L+ + +Y DSLTGLPN Sbjct: 732 WNRRKNGEVYPERKTITAVRSANGDITHYVAISSDISELKRTEEKIRQLAYYDSLTGLPN 791 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R IFE LT AR + F+DLD FK +ND GH+ GD L+QV ERL + Sbjct: 792 RSLIFERLTQQMKAARREGTYGALLFMDLDYFKTLNDSLGHHMGDRLLVQVAERLKNCLE 851 Query: 245 NGEVIGRLGGDEFLVVSLNNENA------DISSLRERIQQQIRGEYHLGDVDLYYPGASL 298 + E RLGGDEF+V+ + + R+++ + + L D ++Y S+ Sbjct: 852 DEEAAARLGGDEFVVLLAPAKPSASVAAGQAIVHARRVRELLSAPFQLDDY-VHYISVSI 910 Query: 299 GIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 GI A+ L AD AMY K + A+ + Sbjct: 911 GIALFPDGANTAEDVLKQADTAMYVAKNEGRDGVRFYESAMEA 953 Score = 57.4 bits (138), Expect = 7e-07, Method: Composition-based stats. Identities = 20/172 (11%), Positives = 43/172 (25%), Gaps = 22/172 (12%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 ++ Q + + E +RQ E L + + + + D++ + A Y Sbjct: 512 PVLQGTLQDVTERWEAERALRQSEERLRLHVEHLPLAVIEWDLDFIVSRWNPAAERIFGY 571 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 + F ++V ++ + G + T DG Sbjct: 572 GADRMIGR----------SAGILFPEDVLEQAEAIWREVSGGSGNRVVTANVTADGRTIR 621 Query: 124 TLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSY 175 E L G + + + A L + Sbjct: 622 ------------CEWYNTPLTTPDGTVIGVASLVDDITRREAVEAELRLAAT 661 >UniRef50_B9LZ98 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Geobacter sp. FRC-32 RepID=B9LZ98_GEOSF Length = 912 Score = 343 bits (880), Expect = 7e-93, Method: Composition-based stats. Identities = 70/338 (20%), Positives = 125/338 (36%), Gaps = 24/338 (7%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 +I + + ++ +R+ + D + L + + L ++ Y Sbjct: 334 TLINAFNSMILSLDQHQNALRESESNFRALADNANDGLQIITDSSHLAYVNKRAAEIVGY 393 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 E ++ ++ I + D Sbjct: 394 SVEEMLLTTIETI----IHPDHLQMIIERKAKTDAGEFVPKQF----------------- 432 Query: 124 TLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLP 183 + A ++ G + + ++A + +Y D+LTGLP Sbjct: 433 EIMLAHRNGSCVPVEVTTARTIWQGK-QVELAIVRDITDRKKAEDEIQQLAYYDTLTGLP 491 Query: 184 NRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQ 243 NR + + L A N K+ I F+DLD FK IND GH +GD L V ERL Sbjct: 492 NRSLLQDRLGQGIVQAVRDNRKVAIMFLDLDRFKSINDTLGHVAGDSLLATVAERLTECV 551 Query: 244 QNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVE 302 + + + R+GGDEF+++ E+ D++ + E+I I L D +++ AS+GI Sbjct: 552 RETDTVARIGGDEFVIIISAIEHAEDLNKIAEKILAAISKPLVLNDQEIFI-TASIGIAI 610 Query: 303 VDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + TD L AD+AMY+ K + ++ Sbjct: 611 YPEDGTDVQGLLKNADLAMYKAKDQGKNAFQYFSREMN 648 >UniRef50_B8KF61 Ggef/eal/pas/pac-domain containing protein n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KF61_9GAMM Length = 810 Score = 343 bits (880), Expect = 7e-93, Method: Composition-based stats. Identities = 76/339 (22%), Positives = 137/339 (40%), Gaps = 30/339 (8%) Query: 2 SDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQK 61 D II V + ++KE + + + Q V + D + ++ + A + Sbjct: 234 QDSIICAVGRDISKENAAKQGLFQ----AAAVFKNSGEGILISDEKGLIRDVNAAFSQIT 289 Query: 62 MYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSF 121 Y + + SL + + F+ W G++ Sbjct: 290 GYSRDE-AIGQATSLLRSGRHDAEFY----KKMWHALKET-----------------GTW 327 Query: 122 YGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTG 181 G + + E + G + ++ + QL+E L ++ D LT Sbjct: 328 RGEIWNRRKSGAVFPELL--TISKIDGQNSGFVAIFTDITQLKETEEQLQKLAHYDPLTE 385 Query: 182 LPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNT 241 LPNR I E L A+ + ++ + F+D+D+FK IND GH +GD L RL Sbjct: 386 LPNRYLINERLQQSIRRAQRRSERLAVFFLDIDSFKNINDSLGHLAGDKLLAMTANRLRE 445 Query: 242 LQQNGEVIGRLGGDEFLVVSLNNENADISS-LRERIQQQIRGEYHLGDVDLYYPGASLGI 300 L ++ + +GR+GGDEFL++ + + D+++ + E+I +R L + AS+GI Sbjct: 446 LLRDDDTVGRIGGDEFLMLLEDINSPDVATNIAEKIIGALRKPTILEGRSVSV-SASVGI 504 Query: 301 VEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 + A++ + AD AMY K+ + T L Sbjct: 505 SIYPDDGQTAETLMSNADAAMYSAKEQGRNTFRFYSENL 543 >UniRef50_C6CAQ7 Diguanylate cyclase with PAS/PAC and GAF sensors n=3 Tax=Dickeya RepID=C6CAQ7_DICDC Length = 506 Score = 342 bits (879), Expect = 9e-93, Method: Composition-based stats. Identities = 78/348 (22%), Positives = 137/348 (39%), Gaps = 10/348 (2%) Query: 2 SDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDM-ESTYLTKVDVEARLQHIMFARNSQ 60 D R + L+ L+ ++ ++ +E + VD E + + A + Sbjct: 158 HDNSYNRALELLSSGAPLKDILDAIIFSVEEKNPGRIVCSVLLVDKEKKCLTLGSAPSLP 217 Query: 61 KMY--IPENFTVSWDYSLCKRAIDENCFFSDE---VPDRWGDCI-AARNLGITTFLSTPI 114 Y N ++ + A E W A G+ + S PI Sbjct: 218 GFYKNAMHNVKIADGAASFGTAAYSGKRVIAEDISTHPHWSLYKGLALYAGLRSCWSEPI 277 Query: 115 HLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 + G L + +E ++ A L+A I++ ++ LR + + Sbjct: 278 FGQNKEILGVLSVYHRKVYSPTEDEIASIEKSAQLVAVAIERYRAIDMLRRSEEHYRQLA 337 Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 + DSLT L N E + L++ KI + F+DLD FK IND FGH +GDL L + Sbjct: 338 HYDSLTSLANGLTFAEQMEQAIQLSKQTGRKIALMFLDLDKFKQINDTFGHATGDLLLKE 397 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYY 293 R+ + ++ + + R GDEF+++ E + + ++I + + + L Sbjct: 398 AAVRMRSAVRDTDTVYRRSGDEFIILLQGIKEIENTLYVADKIHHALNEPFFIEGKKLDI 457 Query: 294 PGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 S+GI TD+ + AD AMYQ K + + H L+S Sbjct: 458 -SCSIGIALYPEHGTDSLTLAINADAAMYQAKALGRSQTQIYH-DLNS 503 Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 15/178 (8%), Positives = 42/178 (23%), Gaps = 33/178 (18%) Query: 11 QSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTV 70 + L ++ + + + L M+ + + D + ++ + Y E Sbjct: 21 RRLQEKSNSDQKKQDFLNMIFFAAEYSPASIMIADENCEIVYVNRQFTTMSGYEAEEILG 80 Query: 71 SWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASS 130 + + + W + G Sbjct: 81 RKTN-----ILSSGMTNASVYDELWS-----------------TLNKGEVWNGEFINRKK 118 Query: 131 EKR-QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + W + + + A QY+ + + + + + D NR Sbjct: 119 NGQLYWEKASIVKIYNKASNSMQYVGIKIDITERKTQE-------HHD---NSYNRAL 166 >UniRef50_B7JWK6 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=4 Tax=Cyanothece RepID=B7JWK6_CYAP8 Length = 1143 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 72/337 (21%), Positives = 129/337 (38%), Gaps = 24/337 (7%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARL-QHIMFARNSQKMYIPE 66 + + K + E + + LE + + + D + R ++ A E Sbjct: 562 GLITDITKRKRTEQALYDSEKRLEGILNSLQDVIWSADPKTRQSLYLNPAIQLVYGRPME 621 Query: 67 NFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLC 126 +F LC ++ + G +T + I PDG T Sbjct: 622 DFFRDPHLWLC-------MVHPEDQELVSHHLKLLEDKG-STEVHYRIIRPDGE---TRW 670 Query: 127 AASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 S + ++ G + + + + ++A L + D+LT LPNR Sbjct: 671 LHSRSR---------LVYDEQGKSLRIDGINSDITERKQAEEQLQYNATHDTLTQLPNRL 721 Query: 187 AIFENLTTLFSLARHLNHKI-MIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQN 245 + L R + + + F+DLD FK+IND GH GD L ++ RL + Sbjct: 722 LFMDRLEHALERRRRYSDPLFAVLFLDLDEFKVINDSLGHALGDELLREIARRLQKSLRA 781 Query: 246 GEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVD 304 + + RLGGDEF ++ + D + ERI + + ++L +++ S+GI + Sbjct: 782 DDTLARLGGDEFTILLEEIHDVKDAIKIAERIHKDLTRPFNLEGQEIFTNT-SIGIALSN 840 Query: 305 PETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 E A L AD AMY+ K + + +H+ Sbjct: 841 GEYEAASEILRDADTAMYRAKAGGKACYAIFDQQMHA 877 Score = 55.5 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 15/169 (8%), Positives = 40/169 (23%), Gaps = 27/169 (15%) Query: 10 SQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFT 69 +++ + + E + + + + D ++ + + Y + Sbjct: 439 LRNITDSYQANQKLAESEEKYRKIVETTNEGIWISDHHNKITFVNHQMSEILGYTVDKMM 498 Query: 70 VSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAAS 129 ID E + + + + DGS Sbjct: 499 GM----SLLTFIDAAQLSLVEKSGQKTEQSLPGTHDLK------LRRQDGS--------- 539 Query: 130 SEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDS 178 W+ + L G + + + + Q+ DS Sbjct: 540 ---ELWAIVSTNALFNPEGDYMGTLGLITDITKRKRTE-----QALYDS 580 Score = 47.0 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARN 58 M +++I V++ + +E+ +E ++ E + S L V++E ++ + A Sbjct: 324 MEEKLIYAVARDITEEKKIEIALKDSEERFRQIVTTISDGLIVVNLEGNIRFVNLAAQ 381 >UniRef50_C6NZZ7 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=2 Tax=Bacteria RepID=C6NZZ7_9PROT Length = 1152 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 81/340 (23%), Positives = 128/340 (37%), Gaps = 28/340 (8%) Query: 7 ARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPE 66 AR++ + + E + + V D Y+ ++ + ++ K Y+P+ Sbjct: 566 ARLASIAIERKRSEEALHYSEKRFRDVNDAAGEYVWEMGTDMVYTYVSNRSVDVKGYVPD 625 Query: 67 NFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLC 126 L E D N I + S + D + GTL Sbjct: 626 E--------LLGHTPMEFMPVEDI-----PHVREIVNRAIASNTSFKLQHRDITKSGTL- 671 Query: 127 AASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 W E G + + + A + + ++ D LT LPNRR Sbjct: 672 -------LWEEVNGVPFFDEHGELMGLRGTGMNITDRKRAEEEIKSLAFYDPLTHLPNRR 724 Query: 187 AIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNG 246 + + L + + + + FIDLDNFK +ND GH+ GDL L QV RL + + G Sbjct: 725 LLVDRLQHALASSTRSGREGALLFIDLDNFKTLNDTLGHDIGDLLLQQVALRLASCVREG 784 Query: 247 EVIGRLGGDEFLVVSLNNENA------DISSLRERIQQQIRGEYHLGDVDLYYPGASLGI 300 + + RLGGDEF+V+ S+ E+I + Y L + Y S+G Sbjct: 785 DTVARLGGDEFVVMLEELSEQTLEAAAQTESIGEKILLTLNQPYLLAAHE-YRNSPSIGA 843 Query: 301 VEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + + L ADIAMYQ KK + T P + Sbjct: 844 TLFGNKPQSIEELLKQADIAMYQAKKAGRNTLRFFDPQMQ 883 Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 61/177 (34%), Gaps = 13/177 (7%) Query: 2 SDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQK 61 +Q ++ + LA + S+ S+++ +++ +E + + +D + + A + Sbjct: 415 YEQFRSQSLELLAGDNSILSILKAIVQGVERLNPGMLCSILLLDKDGKHLGKGIAPSLPD 474 Query: 62 MYIP--ENFTVSWDYSLCKRAI--DENCFFSD-EVPDRWGDCI-AARNLGITTFLSTPIH 115 Y E + C A E D + W A G+ + S PI Sbjct: 475 FYNTAIEGVEIGLGVGSCGTAAYTKERIIVEDIQTHPYWALYKELAAKAGLGSCWSQPIL 534 Query: 116 LPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIA 172 GT + +E Q+++ A L + I + + + AL Sbjct: 535 SSTDQVLGTFAIYHHQAYTPTESDIQLIEQSARLASIAI-------ERKRSEEALHY 584 >UniRef50_Q21XK7 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Proteobacteria RepID=Q21XK7_RHOFD Length = 716 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 70/341 (20%), Positives = 128/341 (37%), Gaps = 30/341 (8%) Query: 2 SDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQK 61 ++ +I RV + + R L + V + + D + ++ + A + Sbjct: 119 TNVLIVRVRNLIQRNAD-----RIQLRLAAHVFEYSGEAIMITDRDNQIVDVNAAFTTLT 173 Query: 62 MYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSF 121 Y ++ + G + Sbjct: 174 GYHKSEVLSKN--------------------PKFLSSGRTTRKEYQAMWAA--IRTGGFW 211 Query: 122 YGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLT 180 G + + + V+ AG I Y+ V +E + ++ D+LT Sbjct: 212 QGEFWDRRKDGSVFPKMMTVSVVLDRAGDIDFYLANFVDVSHYKETERRIEHLAHHDTLT 271 Query: 181 GLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLN 240 GLPNR + L +A+ ++ ++ + F+DLD FK IND GH GD LIQV +RL Sbjct: 272 GLPNRLHLQVFLEQSILIAKRMSEQLAVVFLDLDRFKTINDTLGHPVGDDLLIQVADRLK 331 Query: 241 TLQQNGEVIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASLG 299 T + +++ RLGGDEF+++ ++ + S++ E+I+ + + +G L S+G Sbjct: 332 TSVRQYDMVARLGGDEFVMILRGHDMPSVASAVAEKIRLHLNQPFQIGQHTLRTAT-SIG 390 Query: 300 IVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 I D + AD AMY K ++ Sbjct: 391 IALYPGNGERMDDLMKHADTAMYFTKSEGGNGFCFFSSDMN 431 >UniRef50_C0QQF1 FOG: EAL domain protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QQF1_PERMH Length = 784 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 70/335 (20%), Positives = 125/335 (37%), Gaps = 29/335 (8%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 I + + + + E ++ + MV + + +D E + + Y Sbjct: 476 IQDIIRDITDRKRSEHELK----LASMVFEYTLEGILILDREGNVLRVNKTFADITDYTE 531 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 + +L +EN W + G + G Sbjct: 532 DEVLNHNVLNLPPFKTNENFM-----KQIWKEVKI-----------------KGEWQGEF 569 Query: 126 CAASSEKRQWSERAEQV-LQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 + + + G + YI + + L ++ D LTGLPN Sbjct: 570 WGKRKNGESFPMWFTFISARGNRGQVINYILIITDITNRKIEEKKLKKLAFYDGLTGLPN 629 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R + L AR + + F+DLD FK +ND +GH+ GD L +VG+RL + Sbjct: 630 RLLFYNRLQHTLLRARRNREYVAVMFLDLDGFKQVNDTYGHDIGDELLKEVGKRLQHTVR 689 Query: 245 NGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 + + RL GDEF V+ N +++ + ++I + + + + G S+GI Sbjct: 690 KIDTVARLAGDEFTVIIENLNSPENVNVIAKKILNSFKEPFVINGNKINV-GTSIGIAVF 748 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPA 338 + TDAD+ + AD+AMY KK + V + Sbjct: 749 PLDGTDADTLIKNADMAMYLAKKSGKNRYVVYTKS 783 >UniRef50_Q608F9 Sensory box protein n=1 Tax=Methylococcus capsulatus RepID=Q608F9_METCA Length = 965 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 72/331 (21%), Positives = 121/331 (36%), Gaps = 28/331 (8%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVS 71 + Q + +R ++E + D AR+ + A + Y V Sbjct: 397 DVTDRQKATAQLR----LIETAFQHTRDAVLITDARARILRVNPAFETITGYSA-GEVVG 451 Query: 72 WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 + + + F+ F +G + G + + Sbjct: 452 RTPRMLQSGRHDGAFY-------------------RRFW--RALETEGHWSGEIWNRHRD 490 Query: 132 KRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFE 190 + + ++ G Y+ + + + A A + SY D LTGLPNR Sbjct: 491 GHIFPAWQSVSAVKGPDGSTTHYVSIFTDISEFKRAEAQIRYLSYHDDLTGLPNRAYFQA 550 Query: 191 NLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIG 250 L L A +I + +DLD FK IND GH+ GD L QV ER+ G+ + Sbjct: 551 RLDQLIEAAARDRKQIALVVLDLDRFKTINDSLGHSVGDELLCQVAERIQDCTGQGDFVA 610 Query: 251 RLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDA 310 R GGDEF+V+ +++ + + + I G L SLGI + D+ Sbjct: 611 RQGGDEFVVILADSDAVRAARVANAMISAIAKPAVAGGRTL-IVTPSLGISLYPHDAGDS 669 Query: 311 DSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 +S + +AD AMY K + T + + Sbjct: 670 ESLIKSADAAMYHAKSLGRNTYQFFSAEMSA 700 Score = 48.5 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 22/163 (13%), Positives = 48/163 (29%), Gaps = 21/163 (12%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 + + + + + L++ +++ L+++EMV + L +D + + A F Sbjct: 268 IIRDITEMERLKATLQERLKLVEMVFQYSVSCLVVLDPQFNFIRVNPAYARACRRDVAEF 327 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + L D F + V R AR T Sbjct: 328 EGRNHFEL--YPSDARFIFEEVVRTRRPFEAVARPF-------------------TFPDQ 366 Query: 129 SSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 + + + G + + V ++A A L Sbjct: 367 PERGVTYWDWNLVPVLDGKGEVEYLLFSLVDVTDRQKATAQLR 409 Score = 40.4 bits (94), Expect = 0.084, Method: Composition-based stats. Identities = 12/161 (7%), Positives = 29/161 (18%), Gaps = 27/161 (16%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVS 71 + E + L + + + D++ R++ Y E Sbjct: 149 DVTSFHETEEKL----HRLAAIVESTGDTVIVSDLQGRIRTWNKGAERMWGYAAEEIIGQ 204 Query: 72 WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 L G + + + Sbjct: 205 PVTVL----------------------PPLAKQGEPGQILRRVIDEHEVVRFESRGLHKD 242 Query: 132 KRQWS-ERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 R + L + + ++ A L Sbjct: 243 GRDFPISLTVSPLFDAENRLTGVSAIIRDITEMERLKATLQ 283 >UniRef50_C4UW07 Phosphodiesterase n=1 Tax=Yersinia rohdei ATCC 43380 RepID=C4UW07_YERRO Length = 875 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 79/346 (22%), Positives = 136/346 (39%), Gaps = 16/346 (4%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 M + + +V ++L +E+ L ++ L +E + + + D L H+ A N Sbjct: 278 MYEVLQYKVLEALVRERPLAEVMSLLCNEVERIAPEVTASILFADGPDTLSHL-AAPNLP 336 Query: 61 KMY--IPENFTVSWDYSLCKRAIDENCFFSDE---VPDRWGDCI-AARNLGITTFLSTPI 114 +Y N + C A + W G+ STPI Sbjct: 337 SIYTDSLINVPIGPSAGSCGTAAFRKEPVEVQDIATDPLWAGYRHLVLPHGLLACWSTPI 396 Query: 115 HLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 GT + R SE Q+++L A L + + + + + + Sbjct: 397 FSSQEKVIGTFAFYYKQVRSPSEFHRQLVKLIANLCSLAM-------ERELSRKQIQQLA 449 Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 + D LTGLPNR +LA H + + I+LD FK +ND GH +GD L Sbjct: 450 FYDPLTGLPNRSQFLVYAQQAITLATESGHSLAVLVINLDRFKQVNDSLGHAAGDELLAA 509 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYP 294 + +RL ++IGRL GDEF++++ + E++ + + V++ P Sbjct: 510 IAQRLRHELSKNDLIGRLSGDEFIILAP-CTMQQATVKVEKLLSLLSQPCIIASVNI-IP 567 Query: 295 GASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 AS+GI D ++ ADIAM++ KK ++ Sbjct: 568 SASIGISLYPENGVGMDMLMNHADIAMHKAKKLGSGHFNFFSVEMN 613 >UniRef50_Q47Y83 Sensory box sensor/GGDEF/EAL domain protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47Y83_COLP3 Length = 1071 Score = 341 bits (875), Expect = 2e-92, Method: Composition-based stats. Identities = 76/332 (22%), Positives = 126/332 (37%), Gaps = 28/332 (8%) Query: 11 QSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTV 70 Q LA+ E R V S + + E R++ + A + E Sbjct: 497 QMLAERIKSEGEQRIS----AAVFKYASEAIMITNAENRIETVNPAFCHISGFSIEEVLG 552 Query: 71 SWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASS 130 L D + + W D S+ G + Sbjct: 553 KSPNILNSGKHDNHFY-----QKMWQSLE-----------------QDNSWQGEIWNKRK 590 Query: 131 EKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIF 189 + E A V++ QYI + + + ++ + Q+ DSLTGLPNR Sbjct: 591 NGEIYPEFLAISVVRDQDKKPLQYISLFSDITKHKKYEEDIWLQANYDSLTGLPNRGLCV 650 Query: 190 ENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVI 249 E L + + ++ + FIDLD FK +ND +GH+SGD L RL + + + Sbjct: 651 ERLHNKLKGDKAEDSEVALLFIDLDRFKFVNDTWGHSSGDELLKLAAIRLRNCIREKDTV 710 Query: 250 GRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETT 308 R GGDEF+V+ + N I + + I + +HL + + AS+G+ + Sbjct: 711 ARFGGDEFVVLLVGLSNRFAIERVVKNILTSLSMPFHLRNNNEAVVSASIGVTIGPVDGD 770 Query: 309 DADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + + L AD AMYQ K + T +++ Sbjct: 771 NVELLLKNADTAMYQAKAAGRNTFQFFTKSMN 802 >UniRef50_C6CKZ2 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Dickeya RepID=C6CKZ2_DICZE Length = 689 Score = 341 bits (875), Expect = 3e-92, Method: Composition-based stats. Identities = 71/331 (21%), Positives = 121/331 (36%), Gaps = 29/331 (8%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVS 71 + + Q ++ + E + ++ + I A Y + Sbjct: 119 DITERQKAREQMKIAAAVYE----STQEAIIVINTSRSIISINPAFTRLTGYSAADVVGQ 174 Query: 72 WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 Y D + + T T DG + G + + Sbjct: 175 PSYIFRSDRHDADFY--------------------TAMWRT--VDEDGVWVGEMWDRKKD 212 Query: 132 KRQW-SERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFE 190 + E V++ AG Y+ + + Q ++ A + Q+ D++T LPNR + Sbjct: 213 GSDYLKEITINVIKDAAGTPINYVGVFSDITQRKKQEALIWRQANYDAVTTLPNRHHFQD 272 Query: 191 NLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIG 250 L A+ + + IDLD+FK +ND GH +GD L+ V RL Q + I Sbjct: 273 KLERAVEHAKQSGRPMALMLIDLDHFKSVNDSLGHRAGDALLLAVSNRLTDCVQGADTIA 332 Query: 251 RLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTD 309 RLGGDEF ++ + N D L + Q+ +++ + AS+GI ++ Sbjct: 333 RLGGDEFAIILTDLHQNGDSGCLARTLLAQLAQPFNIDG-ESMLVSASIGIALFPNDSDT 391 Query: 310 ADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + AD AMY K + PALH Sbjct: 392 LEELFKNADQAMYAAKSAGRNCFNYYTPALH 422 Score = 43.5 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 16/146 (10%), Positives = 39/146 (26%), Gaps = 22/146 (15%) Query: 26 LLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDENC 85 + + + D + ++ + + A + Y E Sbjct: 8 SESLFQAILDRCPVGIAVINYDGHYVTVNPAYGAIYGYTQEEMA--------------GR 53 Query: 86 FFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQL 145 F+ P+ D + AR+ G+ G + + +E V Sbjct: 54 SFTMVFPESARDSVLARHRQF--------LDEGGTLGGEWTVMRRDGVILTIWSESVPFA 105 Query: 146 FAGLIAQYIQKEALVEQLREANAALI 171 G A + + + ++A + Sbjct: 106 QHGHRADRLVYVLDITERQKAREQMK 131 >UniRef50_B1XZW3 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=7 Tax=cellular organisms RepID=B1XZW3_LEPCP Length = 1069 Score = 341 bits (875), Expect = 3e-92, Method: Composition-based stats. Identities = 73/334 (21%), Positives = 127/334 (38%), Gaps = 30/334 (8%) Query: 10 SQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFT 69 + + LE + E+ V + S + VD + R+ +A + Sbjct: 486 LAPINHLKQLEQRL----ELWAKVFETSSEGIFIVDAQQRILTANWALTRSTGHDLIELM 541 Query: 70 VSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAAS 129 L A + W + GS+ G + Sbjct: 542 GGDPAELLAGA---------DARQTWQSLVERVQ-------------TRGSWQGEVRICR 579 Query: 130 SEKRQWSERAEQ-VLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAI 188 + ++ AG ++ ++ + +E+ + + D LT LPNR Sbjct: 580 RAGGDYPAWLLANAVRDRAGHVSHWVCTSIDITDRKESERRIRFLAEHDVLTELPNRALC 639 Query: 189 FENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEV 248 E L AR K+ + FIDLD FK IND GH+ GD L V +RL + G+ Sbjct: 640 IERLRLALQQARRTGQKVAVLFIDLDRFKNINDSLGHHVGDGLLRSVAQRLVDGVRAGDT 699 Query: 249 IGRLGGDEFLVVSLNN-ENADISSLRE-RIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 + RLGGDEF+VV + +++ + E R+ ++R + + +++ S+GI + Sbjct: 700 VSRLGGDEFVVVLNGLADIEEVAHVVEQRLIPRVRQPHGVQGAEIHV-SCSVGISVFPDD 758 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 D D + AD+AMYQ K + ++ Sbjct: 759 AQDIDELMRQADVAMYQAKAQGRNGAQFFTAEMN 792 >UniRef50_Q3A4W5 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A4W5_PELCD Length = 1274 Score = 340 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 70/337 (20%), Positives = 124/337 (36%), Gaps = 30/337 (8%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 + + + + ES +++L +E + D E R++++ Y Sbjct: 669 LHGLLIDITDSKQSESQLKKLSRAIEQ----SPVSVVITDPEGRIEYVNPKFTQLTGYTL 724 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 E R + W +YG L Sbjct: 725 EEVIAQNP-----RILKSGNLLPSVYDSLWK-----------------TITSGKEWYGEL 762 Query: 126 CAASSEKRQ-WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 + W + L +G I +I + + Q + L + D LTGL N Sbjct: 763 ENKRKDGSIFWESASISPLFDESGKIINFIGVKEDITQRKLNEKRLEYMATHDGLTGLAN 822 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R ++++L ++ + + +DLD FK+IND GH GD L VG+RL + Sbjct: 823 RTLLYDHLEIALHQSQRSKKLVAVILLDLDRFKVINDSLGHLVGDQVLKAVGQRLKQYVR 882 Query: 245 NGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 + + + RLGGDEF+V+ + + + + +++ + L +LY AS GI Sbjct: 883 STDTVARLGGDEFVVLLTDVRDTTAAGKIAHNLLRKLNEPFFLHGRELYV-SASFGICLS 941 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + + D L ADIAMY+ K ++ Sbjct: 942 ETDNVDGTILLRNADIAMYKAKAEGCGLY-FYSHEMN 977 Score = 42.7 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 59/188 (31%), Gaps = 27/188 (14%) Query: 4 QIIARVSQSLA--KEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQK 61 ++ RV++ L + + +L+ L ++ D L E + ++N + Sbjct: 114 ELPHRVARVLDHWRVRQDNTLLEMELCQANLIVDNSPAVLFHWKAEDGWPIVSVSKNISQ 173 Query: 62 MYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTF-LSTPIHLPDGS 120 + +S D+S ++ + A N G F I Sbjct: 174 FGYAQEELMSGDFSYA------TLVHPKDLDRLEEELQAQINRGERIFQTEYRIITKQKE 227 Query: 121 FYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREAN------AALIAQS 174 ++R + E + AG ++ Y +++ + L+ + Sbjct: 228 VRWV------DERTFVE------RDAAGKVSHYQGFIIDIDERKRTELVMAARMRLLQLA 275 Query: 175 YTDSLTGL 182 ++L L Sbjct: 276 TNNTLAQL 283 >UniRef50_B1Y791 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y791_LEPCP Length = 1066 Score = 340 bits (874), Expect = 4e-92, Method: Composition-based stats. Identities = 70/336 (20%), Positives = 129/336 (38%), Gaps = 26/336 (7%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 ++ +E + + + + + + D+ R+ + A Y Sbjct: 482 MSHALAQFTREAQWQESLART-RLHAAALESTQDGVMVTDLRPRIVSVNRAFTEITGYS- 539 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 E V L + E FF+ W L G + G + Sbjct: 540 ETEAVGMSPRLLQSGRHEPAFFTR----LWNQ-----------------LLTHGRWQGEV 578 Query: 126 CAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 +++ + ++ Y+ + +EA L ++ D LT LPN Sbjct: 579 QNRRKNGELYTQWMSVSTVRDEHDQPTHYVSVFTDITPQKEAEQRLQHLAHFDPLTQLPN 638 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R + L + A ++ + FIDLDNFK +ND GH++GD L V +RL T + Sbjct: 639 RLMVLSRLEHAIASAARAERRVAVLFIDLDNFKTVNDSLGHSAGDDLLRAVADRLGTRTR 698 Query: 245 NGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 + +GRLGGDEF+++ + E D + + + + + + + ++Y AS+GI Sbjct: 699 REDTLGRLGGDEFILMLEHLREPQDAAQVAQELIGLLETPFRVAGQEVYVQ-ASIGISLY 757 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 + + + AD AMYQ K+ + +L Sbjct: 758 PDDGLEVGELVRDADAAMYQAKRAGRGVYRFYTESL 793 >UniRef50_Q2BL35 Sensory box/GGDEF/GAF/EAL domain protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BL35_9GAMM Length = 970 Score = 340 bits (874), Expect = 4e-92, Method: Composition-based stats. Identities = 68/336 (20%), Positives = 136/336 (40%), Gaps = 30/336 (8%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 ++ + ++++ E + Q V + + + D E +Q+ A + Y Sbjct: 277 VSGTHTEITEKKAAEGSLLQ----AASVFEHANEGIMITDPEGTIQNANLAFSRITGYSR 332 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 + + + ++ +F + W G++ + Sbjct: 333 NEV-IGQNPRIFSSGHHDDQYF----AEMWKS-----------------LSEKGNWTNEI 370 Query: 126 CAASSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 + ++ + ++ G + +Y+ + + L++ L ++ D+LTGLPN Sbjct: 371 WNRRKDGEIFAAIQTVSAIKDENGELLRYVSLFSDITALKKQQQQLEKIAHYDALTGLPN 430 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R + + L A+ + +AF DLD FK +ND GH+ GD LI++ ER + Sbjct: 431 RVLLSDRLQQAILQAKRHKRLLAVAFFDLDGFKEVNDTHGHSIGDKLLIELAERSKQALR 490 Query: 245 NGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 G+ + RLGGDEF+VV + + + + ER+ + I + ++ AS+GI Sbjct: 491 EGDSLARLGGDEFVVVLQDLHSSEESLPVLERLLKAISKPIFMNHTEICV-SASIGITFY 549 Query: 304 DP-ETTDADSALHAADIAMYQEKKHKQKTPFVAHPA 338 + DAD + AD AMY K+ + + Sbjct: 550 PQADEIDADQLIRQADQAMYVAKQSGKNRYHIFDTE 585 >UniRef50_Q2BQI6 Putative uncharacterized protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BQI6_9GAMM Length = 955 Score = 340 bits (874), Expect = 4e-92, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 126/337 (37%), Gaps = 30/337 (8%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 I + + + E+ + Q V + D + + A + Sbjct: 383 IEGYIEDVTERIEAENRLNQ----AAAVFRSTGEGVAITDQNGTIVDVNEAFTKITGFDR 438 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 + + + + + + F+ + G + G + Sbjct: 439 DEV-IGKNTRILQSGKHDIAFYEN-------------------MWEQ--IQKHGHWRGEV 476 Query: 126 CAASSEKRQWSER-AEQVLQLFAGL-IAQYIQKEALVEQLREANAALIAQSYTDSLTGLP 183 + + E + G + Y+ A + L+E A L ++ D+LT LP Sbjct: 477 WNRAKSGTIYPEILTISAIDFKKGQQPSGYVGVFADITSLKETEARLDHLAHYDALTELP 536 Query: 184 NRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQ 243 NR E L ++ K+ + F+DLD FK IND GH GD+ L ++ RL + Sbjct: 537 NRLLFRERLIHSLLMSERKKTKVAVLFLDLDRFKNINDTLGHGVGDILLAEIASRLRHVV 596 Query: 244 QNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVE 302 + G+ +GR+ GDEF ++ + + D+ + E+I + L AS+G+ Sbjct: 597 RMGDTVGRISGDEFCLILEDIQDVTDVVPIVEKILSVFSQTIQINSHMLQI-SASIGVAI 655 Query: 303 VDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 + DAD+ L +D AMY+ K+ + T + Sbjct: 656 SPDNSNDADALLSFSDSAMYEAKEAGRNTYKFYTAEM 692 Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 19/153 (12%), Positives = 39/153 (25%), Gaps = 21/153 (13%) Query: 19 LESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCK 78 E +R+ + V + + + + + E+ S Sbjct: 140 AEKALRESEQRYRGVVEDFPIMICTYKPGGEIIFVNQSYCKLFGRTSEDLVGSN------ 193 Query: 79 RAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSER 138 F D +P+ + + G+ T S P + + + W Sbjct: 194 --------FLDLIPEGDRPALISNISGLNT--SKPTFVNEHRV-----ILPGDNIGWQRW 238 Query: 139 AEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 + + G I Y + Q AL Sbjct: 239 TNRAIFNRQGEIESYQSIGEDITQRMIQERALE 271 >UniRef50_B9Z1H0 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z1H0_9NEIS Length = 753 Score = 340 bits (873), Expect = 4e-92, Method: Composition-based stats. Identities = 73/335 (21%), Positives = 128/335 (38%), Gaps = 28/335 (8%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 +S+ + +E++ + + +L + E++ + +D + RL I A Y + Sbjct: 424 ISRDVTEERNAQREIERLSQRNELLLMAAGEGIYGLDEQERLTFINPAAQRMLGYSADEL 483 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWG-DCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 +D+ P+ A L Sbjct: 484 IGQVPP------WRHPEQVADDRPNACPVRQTLADGLPRRGC--------------EAWF 523 Query: 128 ASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + R + G ++ + V + ++A A + ++ D LTGL NRR Sbjct: 524 LRRDGRGFPAMLTVSPIGEPGRLSGVVVTFQDVTERKQAEAEIHRLAFYDPLTGLANRRL 583 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + + L F+ + ++ FIDLD+FK +ND GH+ GD+ L++V RL + + Sbjct: 584 LHDRLAQAFAKSARQRSHGVVLFIDLDHFKALNDTLGHDVGDVLLVEVARRLVEAVREED 643 Query: 248 VIGRLGGDEFLVVSLNNENA------DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIV 301 + RLGGDEF+V+ + E+I+ + Y L Y S+GI Sbjct: 644 TVARLGGDEFVVMLERLGGELLPAAFQAERVAEKIRTALNQPYVLKGQP-YRSSPSIGIS 702 Query: 302 EVDPETTDADSALHAADIAMYQEKKHKQKTPFVAH 336 E D L ADIA+Y+ KK + T Sbjct: 703 LFLGEQKTRDELLKHADIALYRAKKAGRNTVRCYD 737 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 20/165 (12%), Positives = 41/165 (24%), Gaps = 16/165 (9%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 ++ A+ E+ ++ E L + + + D R + + N Sbjct: 293 ITALQAEGGRAEAEIKSSQERLSSLIEAMPDAIFFKDGAGRWLITN-GPARRLFQLQGNE 351 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + + A E F + D A G + +G + Sbjct: 352 WLGITDAALGAARPE---FDELSSACQRDDELAWQAGKLCLFEEQLRDAEGRLHQF---- 404 Query: 129 SSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQ 173 E + + G I V + R A + Sbjct: 405 --------EVRKVPIFESDGRRKGLIVISRDVTEERNAQREIERL 441 >UniRef50_C0Z6C0 Probable signaling protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z6C0_BREBN Length = 708 Score = 340 bits (873), Expect = 4e-92, Method: Composition-based stats. Identities = 64/334 (19%), Positives = 134/334 (40%), Gaps = 23/334 (6%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 + + + +E +++ E ++ + S ++ ++++ ++ + + + Sbjct: 139 IRSDITARKQMEDELKRSEEKYRIIAENTSDIISIINLDGEFLYLSPSHKRVWEHTVPDE 198 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + + F V D A +T + Sbjct: 199 EI-------------HNLFEWIVEDDRDIFAYAIQHAFSTRKEYMVECR--------INT 237 Query: 129 SSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAI 188 W+E + G + + + V +++ + +Y D+LT LPNRR Sbjct: 238 QRNDVIWTESKINPIMDEEGNVTKLLLITRDVTDRKQSEETIHHLAYHDALTDLPNRRMY 297 Query: 189 FENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEV 248 + L+ A+ + + F+DLD FK +ND FGH+ GD+ LI+ +RL + G+V Sbjct: 298 VQQLSKEMMQAKRFQSSLAVLFLDLDRFKDVNDSFGHDVGDMLLIEASKRLQACLKPGDV 357 Query: 249 IGRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPET 307 + RLGGDEF ++ + + + L E+I Q++ + L ++ S+GI + Sbjct: 358 VARLGGDEFTIMQNQLLDRNEATELAEQIMYQLQRPFELDGH-VFNVSCSIGIALYPQDG 416 Query: 308 TDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + + L AD A+Y K + P++ + Sbjct: 417 DNPEDLLKRADTALYTVKSRGKNGYDFFDPSMEA 450 Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 7/152 (4%) Query: 28 EMLEMVTDMESTYLTK-VDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDENCF 86 +M+ +T + L + D E + A + ++ + RA ++ C Sbjct: 4 QMISSLTPQDWAGLLREKDGELNMVVNELADVKYALDQSTILAITDHKGIILRANEQFCR 63 Query: 87 FSD-EVPDRWGDCIAARNLGIT---TFLSTPIHLPDGS-FYGTLCAASSEK-RQWSERAE 140 S E + G+ N G F + G + G + + + W + Sbjct: 64 ISKYERSELIGNDHRILNSGYHPKSFFKEMWSCIRSGQVWRGEIRNCAKDGSYYWVDTTI 123 Query: 141 QVLQLFAGLIAQYIQKEALVEQLREANAALIA 172 + AG I QY+ + + ++ L Sbjct: 124 VPFKNQAGEIYQYLSIRSDITARKQMEDELKR 155 >UniRef50_Q2SF23 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SF23_HAHCH Length = 637 Score = 340 bits (873), Expect = 5e-92, Method: Composition-based stats. Identities = 72/337 (21%), Positives = 131/337 (38%), Gaps = 30/337 (8%) Query: 13 LAKEQSLESLVRQLLEM------LEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPE 66 + + L + V+ L E L + D R++ + + Y E Sbjct: 59 IRLNRQLAAKVKALHERDFKLKKLSSAVTNSGCSIIITDRLGRIEFVNNKFVNVTGYGQE 118 Query: 67 NFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLC 126 F D + + D + + + DG + G + Sbjct: 119 EARGR---------------FLDILNPKDMDAEKPQEQIWESDILY-----DG-WEGEVL 157 Query: 127 AASSEK-RQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNR 185 + + W + + Y+ V +L+EAN + + DSLTGL NR Sbjct: 158 SRRRDGYDFWWAVTVSTVCDSDNTVTNYVISGVDVSELKEANRKMQQMALYDSLTGLANR 217 Query: 186 RAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQN 245 R + L A +I + F+DLD FK IND GH++GD L V +RL + Sbjct: 218 RLFVDRLEQAVKAASRDRKQIALLFLDLDQFKRINDTLGHDAGDSLLQTVAQRLKNCVRA 277 Query: 246 GEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVD 304 + + RLGGDEF V+ + + ++ + +I + ++ L ++ S+G+ Sbjct: 278 KDTVARLGGDEFTVLLTDIVDTFSVTPVATQILKALKEPIKLKKHEV-IVSTSIGVTLAP 336 Query: 305 PETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + +AD + AD+A+Y+ K+H + L++ Sbjct: 337 TDGANADVLMKNADLALYRAKEHGRDRYHFYTEELNA 373 >UniRef50_C6WYR4 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WYR4_METML Length = 681 Score = 340 bits (873), Expect = 5e-92, Method: Composition-based stats. Identities = 82/342 (23%), Positives = 136/342 (39%), Gaps = 39/342 (11%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 + RV + + + E +RQ + + + L +D+E R A++ Q P Sbjct: 111 LLRVMRYAIERKRAELELRQSEAKVRALYEAVPDLLLFLDLEGRFLECKPAKDFQTHIEP 170 Query: 66 ENFTVSWDYSLCKRAIDENCFFS-----DEVPDRWGDCIAARNLGITTFLSTPIHLPDGS 120 E+F + I E + A G++ + S I + Sbjct: 171 EHFLGKTIHEALPEGIAEQAMLCLEKVVVGSGITSFEYQMALPQGVSNYESRFIRASEEQ 230 Query: 121 FYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLT 180 + + + + L ++ D+LT Sbjct: 231 V--------------------------------LCIVRDISESKRTQQQLHFLAHYDTLT 258 Query: 181 GLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLN 240 GLPNR E+L + A + I + FIDLD FK IND GH GD L QVG R++ Sbjct: 259 GLPNRLLFNESLHQAQTHANRTSDTIAVMFIDLDRFKNINDTLGHGIGDKLLQQVGNRIS 318 Query: 241 TLQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLG 299 + + + R+GGDEF VV +N E +D + + E+I +R + +G+ +++ GAS+G Sbjct: 319 LCIRESDTVARMGGDEFAVVLVNVREESDAAVVAEKIIDALRLPFMVGEHEVFV-GASIG 377 Query: 300 IVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 I P D D L AD+AMY K+ + + + Sbjct: 378 ITFYRPGQDDRDVLLEKADVAMYHAKERGRNNFQFYSSEMDA 419 >UniRef50_B8GM77 Putative uncharacterized protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GM77_THISH Length = 759 Score = 340 bits (872), Expect = 5e-92, Method: Composition-based stats. Identities = 76/330 (23%), Positives = 127/330 (38%), Gaps = 29/330 (8%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVS 71 + +++ E+ + + V + + + D R + A Y + + Sbjct: 178 DVTQQKKTEASL----GLYGKVFESTAEGIAITDSRMRFLQVNEAYCRITGYS-DGELLG 232 Query: 72 WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 + K + F++D G + G + + + Sbjct: 233 RTPRMLKSGHHDAAFYADISKTLEVR---------------------GHWRGEILDRTRD 271 Query: 132 KR-QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFE 190 R + V++ G ++ YI + ++E + L ++ D LT LPNR Sbjct: 272 GRVIPLLQTISVVRDTQGAVSHYITIVTDISSIKETQSRLDFLAHHDPLTELPNRLLFTA 331 Query: 191 NLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIG 250 L A + FIDLD FK IND GH GD L+QV RL L + + I Sbjct: 332 RLEHAIDWAVRNQAHFGLLFIDLDRFKTINDSLGHQLGDRLLVQVARRLRGLVRKSDTIA 391 Query: 251 RLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTD 309 RLGGDEF+V+ NA + L E++ +R + L + +L+ G S+GI + D Sbjct: 392 RLGGDEFVVLVEGIHNAGEAELLAEKLVHAMRQPFFLEETELHI-GCSIGITLYPEDGED 450 Query: 310 ADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 + L AD AMY+ K + L Sbjct: 451 PVTLLKNADAAMYRVKDFGRDGFCKFSQDL 480 >UniRef50_Q5NYX6 Putative uncharacterized protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NYX6_AZOSE Length = 927 Score = 340 bits (872), Expect = 6e-92, Method: Composition-based stats. Identities = 74/327 (22%), Positives = 126/327 (38%), Gaps = 29/327 (8%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVS 71 + +++ E+ +R + V + D +AR+ + A + Y + + Sbjct: 604 DVTDKRNTEARLR----LAASVFTHAREGIVITDAQARIIEVNDAFTAVTGYRRDEVSGQ 659 Query: 72 WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 L ++ DE L G ++G + Sbjct: 660 SLQVL------QSGLHPDEY--------------YKAIW--RALLDSGHWHGEMWNRRKN 697 Query: 132 KRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFE 190 ++E ++ G Y+ + L++ L +Y D LT LPNR + Sbjct: 698 GEVYAEMLDISAVRDSRGRTQNYVALFTDITPLKDHQKQLERIAYHDPLTNLPNRALYAD 757 Query: 191 NLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIG 250 L S + IA+IDLD FK +ND GH+ GD L+ + RL + + G+ + Sbjct: 758 RLQQAMSQCSRRGQHVAIAYIDLDGFKAVNDNHGHHVGDQLLVSIALRLREVLREGDTLA 817 Query: 251 RLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTD 309 RLGGDEF V ++ AD + ER+ +G + L AS+G+ + D Sbjct: 818 RLGGDEFAAVLVDLNNPADCEPVLERLIHAAAAPVPVGTLMLGV-SASVGVTLFPHDKVD 876 Query: 310 ADSALHAADIAMYQEKKHKQKTPFVAH 336 AD + AD AMY+ K+ + T Sbjct: 877 ADELVRHADTAMYRAKRAGKNTYRFFD 903 Score = 45.1 bits (106), Expect = 0.004, Method: Composition-based stats. Identities = 22/169 (13%), Positives = 44/169 (26%), Gaps = 18/169 (10%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 ++ Q + ++ +LV E L + ++ + D E R+ A Sbjct: 469 MSGTRQDITAQKKAAALVADDKERLHTIFEIMPVGILLTDREGRIVECNSASERMLGIGK 528 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 S+ D F +D P + G Y ++ Sbjct: 529 SQL---LTQSVGDAEWD--VFGADGNPMAPAEY-----AGARALAEQRPIH-----YSSM 573 Query: 126 CAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 + W + L+ + + V R A L + Sbjct: 574 EVRTPGSSTWLRVSATPLE---HPLYGVVVAHIDVTDKRNTEARLRLAA 619 >UniRef50_Q3A1G1 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A1G1_PELCD Length = 1061 Score = 340 bits (872), Expect = 6e-92, Method: Composition-based stats. Identities = 70/335 (20%), Positives = 134/335 (40%), Gaps = 30/335 (8%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 ++Q + + + E+ +R+L +++E T + D + +++ Y Sbjct: 490 GIAQDITERKRQENTLRKLSQVVEQ----SPTAVILTDPQGNIEYANPKFTQITGYSLTE 545 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 R + ++E D W A R ++G Sbjct: 546 VHGKNP-----RLLKSGETSAEEYRDLWTTITAGRE-----------------WHGEFHN 583 Query: 128 ASSEKR-QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 + W + ++ AG I+ ++ + + + L + D+LTGL NR Sbjct: 584 KRKDGSLFWEHASISPVRNDAGDISHFLAIKEDITDRKRYEEQLQHLATHDNLTGLANRA 643 Query: 187 AIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNG 246 + + L A+ + +DLD FK+IND GH+ GD L +RL + Sbjct: 644 LLQDRLEQSILFAKRSGRLVAALLLDLDRFKIINDSLGHSFGDRLLQIAADRLRESVRGA 703 Query: 247 EVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDP 305 + + RLGGDEF+++ D+ + ++I +I + + D ++ ASLGI Sbjct: 704 DTVARLGGDEFVILLAEVANEEDVGKVAKKILDRITAPFQIADREI-TVTASLGISIYPQ 762 Query: 306 ETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + D ++ + ADIAMYQ K+ + P ++ Sbjct: 763 DGEDEETLIRNADIAMYQAKEEG-NAFRLYAPEMN 796 Score = 54.3 bits (130), Expect = 6e-06, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 48/177 (27%), Gaps = 11/177 (6%) Query: 1 MSDQIIARV-SQSLAKEQSLE--SLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFAR 57 + + AR+ Q L +EQ+L + R + E++ + D + Sbjct: 339 LEEAQQARLTLQRLFEEQTLASAEIERTSRLLAEVLNAASEVSIIATDPRGIITVFNRGA 398 Query: 58 NSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLP 117 Y E ++ A + +++ DR + Sbjct: 399 EKMLGYSAEEMVGRETPTVFHLASELQTRYTELGADRGTPIKDFADYMAHAT------TA 452 Query: 118 DGSFYGTLCAASSEKRQWS-ERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQ 173 D + S + S ++ A I Y+ + + + L Sbjct: 453 DAE-HREWTYTSKQGEHISVSLVITAMRSPAHGIVGYLGIAQDITERKRQENTLRKL 508 Score = 52.0 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 19/210 (9%), Positives = 52/210 (24%), Gaps = 45/210 (21%) Query: 15 KEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDY 74 + + ++ E L M L ++V++ + Y P+NF + Sbjct: 190 RRDQISKALQTSEERLRMALKASKQGLYDLNVQSGNMIVNAEYALILGYDPQNFRETNGD 249 Query: 75 SLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQ 134 + + ++ + + +A + G + L +R Sbjct: 250 WIARMHPEDRSAVLAV----YRNYLAGKTEEFRA--EFRQRTRCGQWKWVLSMGKIVER- 302 Query: 135 WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI-------------AQSYTDSLTG 181 G + + + + + R++ Q+ Sbjct: 303 ----------DTHGQPLRMLGTFSDITERRQSEEQTRKAEREKADLLEEAQQA------- 345 Query: 182 LPNRRAIFENL--TTLFSLA--RHLNHKIM 207 R + L + A + + Sbjct: 346 ----RLTLQRLFEEQTLASAEIERTSRLLA 371 >UniRef50_B9ZNS8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZNS8_9GAMM Length = 944 Score = 339 bits (871), Expect = 7e-92, Method: Composition-based stats. Identities = 69/342 (20%), Positives = 122/342 (35%), Gaps = 29/342 (8%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 + ++ + + + +++ + V + S + + D E R + A + + Sbjct: 354 LRGLTLDVTAHRRAAAALKESENRYQDVVNHISEVIFRTDAEGRWTLLNPAWEALTGFKV 413 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTF-LSTPIHLPDGSFYGT 124 E + ++ D C G + DGS Sbjct: 414 EETLGQPMCAFVD---------PEDRDDAQSFCSTLLEGGTHAQSEEIRLRTHDGS---- 460 Query: 125 LCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 +W G I + +EA + ++ D LTGLPN Sbjct: 461 --------HRWVSIYASARFDEDGHIMATFGTMMDISDRKEAEEEIRRLAFFDGLTGLPN 512 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R + + L + H + FIDLDNFK IND GH GD L QV R+ + Sbjct: 513 RTLLHDRLGQALANTARTRHHGAVLFIDLDNFKDINDTLGHAVGDDLLCQVARRMENSVR 572 Query: 245 NGEVIGRLGGDEFLVVSLNNENA------DISSLRERIQQQIRGEYHLGDVDLYYPGASL 298 + + RLGGDEF+++ + + ++ ++ +R + L + + S+ Sbjct: 573 EADTLARLGGDEFVIILNDLHPDPARAATEAEAVGRKLINLLREPFQLAGQNRHV-TPSI 631 Query: 299 GIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 G + + L AD+AMY+ K + T P LH Sbjct: 632 GATLFSGRSLGVEEVLKQADLAMYRAKNAGRNTVRFYDPELH 673 >UniRef50_Q0AAU4 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0AAU4_ALHEH Length = 723 Score = 339 bits (871), Expect = 8e-92, Method: Composition-based stats. Identities = 70/341 (20%), Positives = 131/341 (38%), Gaps = 21/341 (6%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 + + R + + + + +++ + + D ++ +D E R I + Sbjct: 132 ENTLER-RRLSRQNEQIRHRLKRSERLYRFIVDNSPDFIYVLDAEGRFTFINRSAERLLG 190 Query: 63 YIPENFTVSWDYSLC---KRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDG 119 P+ L RA+ E F R + + P D Sbjct: 191 MTPDTLLGEHFQCLIADEDRAVAERRFNERRTGQRATHNLELQLAPPGA-AGQPTRTVDL 249 Query: 120 SFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSL 179 + G ++ G V + A + + Q++ D L Sbjct: 250 TAMG----IYADGDAPHP----------GQFLGTYGIARDVTDRKHAESIVHYQAHHDLL 295 Query: 180 TGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERL 239 TGLPNR + + L + AR N ++ + F+DLD FK++ND GH+ GD L QV +RL Sbjct: 296 TGLPNRALLKDRLAQALARARRGNEEVAVLFLDLDRFKVVNDSLGHSVGDQLLQQVAQRL 355 Query: 240 NTLQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASL 298 + G+ + RLGGDEF ++ + + + ++ + + + + L+ G S+ Sbjct: 356 RACLREGDTLARLGGDEFTLLLPAIPDRPAVERVAQKCIDALEQPFMVHNHRLF-LGVSI 414 Query: 299 GIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 GI ++ + AD+AMY K+H + A+ Sbjct: 415 GIALFPEHGETLETLIKHADVAMYHVKEHGKGHYTFFDQAM 455 >UniRef50_Q5NZD7 Putative signal transducer protein with histidine kinase domain n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NZD7_AZOSE Length = 920 Score = 339 bits (870), Expect = 9e-92, Method: Composition-based stats. Identities = 71/339 (20%), Positives = 121/339 (35%), Gaps = 26/339 (7%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 +A+ + L + ++ + + L + D + R+ + A S Y Sbjct: 341 ALAQAQELLHQREADRAQAEEKLALAATALDSAVEGVVIA-RGGRIATVNRAFTSITGYR 399 Query: 65 PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGT 124 L A + D A G + G Sbjct: 400 SAEVIGQPLAILLAEAEKTHR----------NDRRRA-------------MCETGQWQGE 436 Query: 125 LCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 + + + + + + + ++ A L ++ D+LT LPN Sbjct: 437 VHGRRKNGEMYPAWSSISRAAYGSDEMILVCVFSDISAAKQYEARLQHLAHYDALTELPN 496 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R E L + A + + + FIDLD FK IND GH +GD L +V ERL + Sbjct: 497 RLLFRERLADMLVRAERHGNMLALLFIDLDGFKPINDTLGHAAGDELLRRVAERLGGCVR 556 Query: 245 NGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDV-DLYYPGASLGIVE 302 + RLGGDEF V+ + + I + Y L Y AS+GI Sbjct: 557 ASDTTARLGGDEFAVLLDELRSPEEAGIIARNILDTLERPYILAGQPQCQYISASIGIGC 616 Query: 303 VDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 ++ DA++ L AD+AMY+ K+ + P +++ Sbjct: 617 YPSDSLDAETLLRQADMAMYRAKQEGKNRYRFFAPEINA 655 >UniRef50_C5V4D8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V4D8_9PROT Length = 1138 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 75/340 (22%), Positives = 133/340 (39%), Gaps = 24/340 (7%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 + + + + + + L ++ D S + +D++ F N + + Sbjct: 552 GIRTDITERKKSAEAIERSEAKLHILFDSNSDAVLMLDMQG-----FFDCNKAALRL--- 603 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 F + LCK S D + N +++T + F L Sbjct: 604 FGCATTEELCKH---HPADMSPATQPNGIDSLTLANE----YIATATRDGNAQFEW-LHK 655 Query: 128 ASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + + G + + + +++ + ++ ++ D LTGLPNRR Sbjct: 656 RMDSGQSFPADVLLSSMKLDGRVVLQ-ATVRDITERKKSESEIVRLAFYDPLTGLPNRRL 714 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + + L + + I FIDLDNFK +ND GH GDL L++V +RL + + Sbjct: 715 LMDRLQHALTSNLRNDKHGAILFIDLDNFKSLNDTKGHAVGDLLLVEVAQRLKGCVREED 774 Query: 248 VIGRLGGDEFLVVSLNNEN------ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIV 301 + RLGGDEF+V+ N + A + E+I Q + Y L + Y+ S+G+ Sbjct: 775 TVARLGGDEFVVLLDNLSHGHDNAGAHTKRVAEKILQALNLSYMLQGYE-YHSSPSIGVA 833 Query: 302 EVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + + D L AD AMYQ K + T + Sbjct: 834 LFCADASSPDELLKRADSAMYQSKAAGRNTVRFYDERTQA 873 Score = 53.1 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 14/180 (7%), Positives = 45/180 (25%), Gaps = 32/180 (17%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTD---------MESTYLTKVDVEARLQHI 53 + + ++ +L + + + + + + E ++ DV + + Sbjct: 412 EILNQQIRANLLISRESQEKLAASEAHSKRIAEELQYQKFALDEHAIVSVTDVTGTITDV 471 Query: 54 MFARNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTP 113 Y E + ++ + FF Sbjct: 472 NERFCQISQYSREEL-IGKNHKMLNSGWHPKGFFK---------------------AMYR 509 Query: 114 IHLPDGSFYGTLCAASSEKR-QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIA 172 + +C + + W + G +YI + + +++ A+ Sbjct: 510 AITRGQVWNDEVCNRAKDGSLYWLDMTVVPFMDECGKPYKYIGIRTDITERKKSAEAIER 569 >UniRef50_C6P417 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P417_9PROT Length = 961 Score = 338 bits (868), Expect = 1e-91, Method: Composition-based stats. Identities = 72/333 (21%), Positives = 140/333 (42%), Gaps = 29/333 (8%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 + + + + + E+ +R + V D + D + + ++ A Y Sbjct: 656 IGRDITELKQAEAGLR----ITASVFDNSQEAIVITDADNIIVNVNPAFTQITGYSRAEV 711 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + + L + F++ ++ +G++ G + Sbjct: 712 -LGRNPGLLSSGHQDKAFYA-------------------AMWAS--LKREGAWRGEIWNR 749 Query: 129 SSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 ++E + V+ AG + +++ + + +E A L + D+LTG+PNRR Sbjct: 750 RKSGEIYAELLSISVICDDAGNVQRHVAVFSDITYFKEHEAELSHVANHDALTGIPNRRL 809 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + + L + A+ + I +IDLD FK +NDR+GH +GD+ L+ + RL + + G+ Sbjct: 810 LSDRLGQAIAHAQRSGKTLAICYIDLDGFKDVNDRYGHETGDMLLVDITRRLQDVLRAGD 869 Query: 248 VIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 + RLGGDEF+V+ + + + ERI Q I + + AS+G+ + Sbjct: 870 TLARLGGDEFVVLFNDLSQELECIQVLERIVQTIAMPVWFEERSIAV-SASVGVTCYPAD 928 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 + D+ L AD AMY KK + + L Sbjct: 929 DEEGDTLLRHADQAMYVAKKAGKNRFHLYDANL 961 Score = 45.4 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 16/167 (9%) Query: 6 IARVSQSLAKE-QSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 + R + L + + + +RQ EML + + + D R + Sbjct: 520 MRRSKEELMRLVEEKSARLRQNEEMLRTLIEAIPDPIQFKDGAGRWLESNQSARQAFGLG 579 Query: 65 PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGT 124 + D L + I + + + D A R GI + + I LPDG G Sbjct: 580 EVDCAGKTDRELAE--IADPHYRDALLHCHETDEEAWRKDGI-SRVEEIIPLPDG---GE 633 Query: 125 LCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 + +K + E G + + +L++A A L Sbjct: 634 MTFDVIKKPLFHEE---------GRRKGLVIIGRDITELKQAEAGLR 671 Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 15/154 (9%), Positives = 35/154 (22%), Gaps = 23/154 (14%) Query: 19 LESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCK 78 +E L D + D + + ++ DY + Sbjct: 260 MEEKFEVDELFLRTFIDTIPDLVWLKDADGLYLACNRRFEALYGASEKDIIGKTDYDFVR 319 Query: 79 RAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEK-RQWSE 137 R A R + D S ++ R E Sbjct: 320 R----------------EQADAFRKHDLKAMA------EDQSSANEEWLEFADGSRGLFE 357 Query: 138 RAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 + ++ G + + + + ++ + L Sbjct: 358 TIKTPMRDNQGQLIGVLGVARDITRRKQTSQLLE 391 >UniRef50_Q3AAV9 Sensory box/GGDEF domain/EAL domain protein n=6 Tax=Clostridia RepID=Q3AAV9_CARHZ Length = 769 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 79/344 (22%), Positives = 139/344 (40%), Gaps = 25/344 (7%) Query: 1 MSDQIIAR---VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFAR 57 M+++++AR V Q+L + Q + +++ E +V + S L D+E +I Sbjct: 175 MNEELMAREEEVRQNLIEIQRQQDELKKSEERYRLVVEGASDGLWDWDLETDTAYIS--- 231 Query: 58 NSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLS-TPIHL 116 ++ F + C+ I +V + +L I Sbjct: 232 --ERWRDLIGFDKEVINNYCETWIK--FIHPRDVKAVINNLRNHLEKKTPFYLCEYRIKT 287 Query: 117 PDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYT 176 DG + + S K W++ G + + Q ++ + L ++ Sbjct: 288 KDGKY---IWILSRGKALWNKE---------GKAIRMAGSHTDITQRKQMESKLEYMAFH 335 Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 D LT LP R E L + AR K+ + F+DLDNFK+IND GH++GD L ++ Sbjct: 336 DPLTNLPRRDVFLERLKVAMADARRNGKKLAVFFVDLDNFKIINDSLGHHTGDRLLKKIA 395 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPG 295 + L + + I R+GGDEF+++ + D + +RI + L + +L Sbjct: 396 KELTKCVRETDTISRVGGDEFIILLPDVNSIEDTDKVAKRILELFDQPIKLNNYELPV-T 454 Query: 296 ASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 S+GI + L ADIAMY K+ + A+ Sbjct: 455 ISIGIAIYPDHGKSERAILKNADIAMYTAKRKGKNGFQYFDIAM 498 >UniRef50_Q0EX85 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EX85_9PROT Length = 437 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 68/330 (20%), Positives = 129/330 (39%), Gaps = 30/330 (9%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 + + + + +E+ +R + E + D + + + A Y E Sbjct: 132 IIHDITERKRVEAELRIVTAAFE-----SQESMVITDANSVILKVNHAFTKTTGYTSEEV 186 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 V SL K + F+ + T G + G + Sbjct: 187 -VGQTPSLLKSGRHDADFYDE-------------------MWDT--LKRTGKWQGEVWDR 224 Query: 129 SSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + + ++ G+ Y+ + + ++A + +Y D LTGL NR Sbjct: 225 RKNGEIYPKWLTITAVKGENGVTTHYVGLHIDITERKQAEEKISNMAYHDHLTGLANRAL 284 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 ++ L + + +++ + +DLD FKLIND GH GD L++V RL ++ + Sbjct: 285 FYDRLQQAGAHLQRNRNRMGMLMLDLDRFKLINDELGHEWGDRVLVEVSSRLMRCVRSTD 344 Query: 248 VIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 + RLGGDEF ++ L+ + + + + E++ I L Y G S+GI + Sbjct: 345 TVARLGGDEFSIILLDVPSEEFVCKMAEKVITVIGQSLVLKGGH-YEVGVSIGICLASSD 403 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAH 336 D ++ + AD AMYQ K+ + + Sbjct: 404 DQDMETLVKKADAAMYQAKESGRNCYCIFD 433 Score = 48.9 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/156 (9%), Positives = 37/156 (23%), Gaps = 26/156 (16%) Query: 17 QSLESLVRQLLEMLEMVTDMESTYLTKVDVEAR-LQHIMFARNSQKMYIPENFTVSWDYS 75 + +R+ + +M + +D ++R + A Y E+ Sbjct: 17 KPGIDALRESEAHFRQLFEMHRDVMLLIDYQSRTIVDANPAAAQFYGYPLESLRG----- 71 Query: 76 LCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQW 135 + + G S L +G Sbjct: 72 ------MSVSRINAQQESEIHHQRQKAIAGEQNIFSFDHRLANGDVRTV----------- 114 Query: 136 SERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 E ++ + G + + + + + A L Sbjct: 115 -ESHISLVS-YRGK-SLFFSIIHDITERKRVEAELR 147 >UniRef50_Q13IZ7 Putative diguanylate cyclase(GGDEF)/ phosphodiesterase(EAL) with PAS/PAC and GAF sensors n=1 Tax=Burkholderia xenovorans LB400 RepID=Q13IZ7_BURXL Length = 847 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 75/343 (21%), Positives = 132/343 (38%), Gaps = 12/343 (3%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 M +++ +V ++A+E + L +E + +VD Sbjct: 246 MREELQQKVLDAMARELPATEVAGILCREVERIAPEVVATFLRVDDGRLFTLAAPRLPVT 305 Query: 61 KMYIPENFTVSWDYSLCKRAI--DENCFFSDEVPDR-WGDCI-AARNLGITTFLSTPIHL 116 + ++ C A +D D W LG+ S P+ Sbjct: 306 VTRAMDGESIGPCAGSCGTAAWRGTPVVVTDIASDPLWTGYRDLVLPLGLAACWSYPVKG 365 Query: 117 PDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYT 176 DGS GT E + ++ + L A + + +A + ++ Sbjct: 366 ADGSVLGTFAFYYRENHGPVAFHQSLVDMGLSLCALLL-------EREKARMRIHQLAFH 418 Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 D+LTGLPNR L + AR ++ + FIDLD+FK +ND GH +GD L + G Sbjct: 419 DTLTGLPNRNMFETQAQQLLNDARRTERELALVFIDLDHFKRVNDTRGHATGDEVLCETG 478 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGA 296 R ++ ++G+++GRL GDEF+ + + + + ER+ + ++ A Sbjct: 479 RRFKSVLRDGDLLGRLAGDEFVAILPHCGVHQATGIVERLLAATAPPVVVAGAPIH-ASA 537 Query: 297 SLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 S+GI + + L ADIAMY K + + Sbjct: 538 SIGIAMYPADGEHVPTLLRQADIAMYHAKARGRGHFCFFREEM 580 >UniRef50_Q2BPB1 Regulatory component of sensory transduction system n=2 Tax=Gammaproteobacteria RepID=Q2BPB1_9GAMM Length = 885 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 68/339 (20%), Positives = 129/339 (38%), Gaps = 29/339 (8%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 Q I +S+ + +++ E + L + +E + +++ ++++ S Y Sbjct: 312 QGIVGISRDITEKRKAEERILTLSQAVEQ----SPVSVVITNLKGEVEYVNSTFESVTGY 367 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 + D W + S+ G Sbjct: 368 SQAEVLGKD-----SSILKSGKTPPGRYADMWAKLVQGE-----------------SWQG 405 Query: 124 TLCAASSEKRQ-WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGL 182 W + + G + ++ + V + + ++ Q++ D LT L Sbjct: 406 EFQNKKKNGEIFWEQAHIAPVLDAEGEVRHFLAVKQDVTKQKAQEEKILHQAHFDGLTEL 465 Query: 183 PNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTL 242 PNR L T+ A+ H+I + F+D+D+FK +ND GH+ GD L++ +RL Sbjct: 466 PNRFLAMHRLETMMHEAKRNQHQIAVLFLDMDDFKKVNDTLGHDMGDKILVEAAKRLQGS 525 Query: 243 QQNGEVIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIV 301 ++ + IGRLGGDEF+V+ + E + + + QQ R + D+ S+GI Sbjct: 526 VRDSDTIGRLGGDEFIVLINHLERPEQALPIAQNLLQQFRSSLTIDGRDIL-LTMSIGIA 584 Query: 302 EVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + T L AD AMY K + + ++ Sbjct: 585 LYPGDGTTPSELLRNADSAMYHSKAAGRNSFHFYTQEMN 623 Score = 51.2 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 20/173 (11%), Positives = 45/173 (26%), Gaps = 23/173 (13%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 +S Q R+++ + ++ + +L + D ++ D E + A S Sbjct: 185 LSRQEERRLAER--ELHISRQILNRERGLLRGLIDALPDHIFIKDKEGKYLGCNKAFQSF 242 Query: 61 KMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGS 120 + + D E+ + D + + H DGS Sbjct: 243 TGHQEADLIGKTDQDF-----SESNHAITDKSDTLQVINNLLPINREAW----THEQDGS 293 Query: 121 FYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQ 173 E G + + + R+A ++ Sbjct: 294 PI------------LLESQLAPFLDMDGEPQGIVGISRDITEKRKAEERILTL 334 >UniRef50_C0N3Y7 Putative uncharacterized protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N3Y7_9GAMM Length = 1123 Score = 337 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 64/345 (18%), Positives = 125/345 (36%), Gaps = 32/345 (9%) Query: 7 ARVSQSLAKEQSLESLVRQLLEMLEM----------VTDMESTYLTKVDVEARLQHIMFA 56 +S++ + Q E +R +L+ +++ + S + D ++ + A Sbjct: 526 EELSEATKRAQDSEMRIRDVLKEMQLTEQKLLLSDVAFNSTSEAMMITDKSKKIIVVNSA 585 Query: 57 RNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHL 116 + Y + S + + + + Sbjct: 586 FSDITGYDGTEVIGRYPS----------FLVSGLTKSDFQQLSESFAAAMKAY------- 628 Query: 117 PDGSFYGTLCAASSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSY 175 G + G + +K + + + G I + + + +++EA A + + Sbjct: 629 --GIWRGEIQCRHKDKTMFPAYVSMSAVYDTDGNICNMVGVFSDISEVKEAQAKIERHAN 686 Query: 176 TDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQV 235 D LT LPNRR + L N K+ + F+DLD FK +ND GH GD L Q+ Sbjct: 687 YDILTDLPNRRLFTDRLQQAILRCGRHNEKLCLMFLDLDRFKDVNDTLGHEFGDQLLKQM 746 Query: 236 GERLNTLQQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYP 294 R+ + + + RLGGDEF ++ + + ++ +++ +I + + L Sbjct: 747 AVRIQACVREVDTVARLGGDEFTIILSEFDGKSHAVNIAQKLISEIEKPITVQEQTLRVT 806 Query: 295 GASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 S+GI + D+ + AD AMY K L Sbjct: 807 T-SVGITFYPDDAIDSGMLIQNADRAMYAAKDMGGSAFKFYTTEL 850 >UniRef50_Q47ED8 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Dechloromonas aromatica RCB RepID=Q47ED8_DECAR Length = 827 Score = 337 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 68/342 (19%), Positives = 129/342 (37%), Gaps = 18/342 (5%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 + + + + +++ + E + + E ++ + + +++ + ++ Sbjct: 237 LHLRGHVQTVEDISERKITEDALFEEKERAQVTLNSIGDAVLTTNLKGDVTYLNLVAEMM 296 Query: 61 KMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGS 120 + E + EV N + + + DG Sbjct: 297 TGWPREAAIGQP----LSEVFRILNGTTREVAPNPAQLAIRENRTVGLAADSILIHRDGL 352 Query: 121 FYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLT 180 E + + G +A + V + R + + D LT Sbjct: 353 ------------EAAIEDSAAPIHNRDGQVAGAVIVFHDVSESRAMALKMAHLAQHDFLT 400 Query: 181 GLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLN 240 GLPNR + E L+ AR N ++ + F+DLD FK IND GH GD L QV ERL Sbjct: 401 GLPNRALLTERLSRAIGQARRHNKRVGMLFLDLDYFKHINDSLGHAVGDQLLQQVAERLI 460 Query: 241 TLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLG 299 ++ + + R GGDEF+++ E A D + + E++ + +L+ S+G Sbjct: 461 VCIRDTDTVCRQGGDEFVILLAEIEQARDAAPIAEKLLAAFAEPCLIAGNELHV-SLSIG 519 Query: 300 IVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 I + DAD+ + AD AMY K + + +++ Sbjct: 520 ISIYPDDGMDADTVMKNADTAMYHAKANGRNNYQFFTTEMNT 561 >UniRef50_B9R6G6 Putative uncharacterized protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9R6G6_9RHOB Length = 1020 Score = 337 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 77/338 (22%), Positives = 133/338 (39%), Gaps = 30/338 (8%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 Q+I V+Q++ +++ E+ ++ + V + D+ + I A Y Sbjct: 431 QLIYAVAQNITEQKKAENALK----LAANVFTHSDEGIIITDINGAIVDINEAFTDITGY 486 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 + + + S+ + F+ T S DG + G Sbjct: 487 ERDEI-LGNNPSILSSGKHDADFY-------------------QTMWSK--LRKDGVWQG 524 Query: 124 TLCAASSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGL 182 + + ++E ++ +G YI + +++ L + D LTGL Sbjct: 525 EIWNKRKDGDVFAERLTISAIEDESGNTTNYIGLFVDITKMKAHERQLEHLARYDRLTGL 584 Query: 183 PNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTL 242 PNR + +N+ + AR H + IAFIDLD FK +ND +GH +GD L+ V RL + Sbjct: 585 PNRVLLADNMQQAMARARRHGHTLAIAFIDLDGFKAVNDTYGHAAGDELLVSVAHRLTKV 644 Query: 243 QQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIV 301 + + + R+GGDEF+ + + + S RI E+ LG AS+G+ Sbjct: 645 LRTEDTLARIGGDEFVAIITDLPDEKSCVSTLNRILDAASKEFKLGAATASV-SASIGVT 703 Query: 302 EVDPETT-DADSALHAADIAMYQEKKHKQKTPFVAHPA 338 D D AD AMY+ K + P Sbjct: 704 FYPQTEEIDGDQLERQADQAMYEAKISGRNQYKFFDPE 741 >UniRef50_B3E9L8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Geobacter lovleyi SZ RepID=B3E9L8_GEOLS Length = 631 Score = 337 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 72/340 (21%), Positives = 129/340 (37%), Gaps = 36/340 (10%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 +Q++ + Q S + + L+ + D + VD + + + + + Sbjct: 56 EQVLEHL-------QKTNSELAATRDELQAIFDSAGGAIVVVDEKMEVVACN-SYSQWAL 107 Query: 63 YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY 122 + E + + D+ + I Sbjct: 108 FAGERNVMGKNLRSLICGHDQEE-----------------------CILEQILTTQRRV- 143 Query: 123 GTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGL 182 + R + L+ G I++ + + + R A + ++ DSLTGL Sbjct: 144 -EQNDFLHDGRHY-HLVGTPLKNHDGAISRVVLLYTDITERRAAAEEIERLAFFDSLTGL 201 Query: 183 PNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTL 242 PNR + + L L + A N + I FIDLD FK +ND GH +GD L V ERL Sbjct: 202 PNRVLLKDRLAQLLTRAGRYNEMVAILFIDLDRFKEVNDTLGHGTGDQLLQVVSERLTAC 261 Query: 243 QQNGEVIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIV 301 ++ + + RLGGDEF+V+ D + + ++ Q + L +++ G S+GI Sbjct: 262 LRSCDTVARLGGDEFVVLLPGITERDCVGDIAAKLLQSLCKPVQLDAREVFTSG-SIGIS 320 Query: 302 EVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + + AD AMY K+ + T P +H+ Sbjct: 321 LWPIDGDSVSTLFKNADTAMYHAKEQGRNTYRFYTPQMHA 360 >UniRef50_D1B535 Diguanylate cyclase n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B535_SULD5 Length = 1196 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 71/347 (20%), Positives = 134/347 (38%), Gaps = 31/347 (8%) Query: 1 MSDQIIARVSQSLAKEQSLESLVR------QLLEMLEMVTDMESTYLTKVDVEARLQHIM 54 + ++ R S+ L Q+++ + + LE+ + + ++E + I Sbjct: 612 LEKKVQERTSELLLLNQTIQEQLDIKKEQEEKLEIFAKIFSNTIEGIAITNLEGIVLQIN 671 Query: 55 FARNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPI 114 A ++ Y P + ++ + Sbjct: 672 DAFSAMTHYAPHE------------VLGQDIRLLRSYKHPDSLYKEIWDTVF-------- 711 Query: 115 HLPDGSFYGTLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQ 173 + ++ G L + + + G I+ + + + L+ L Q Sbjct: 712 --SNTAWQGELWNKRKDGTLYPALLIIHPILNREGHISYIVFIQHDISVLKHNEEKLHQQ 769 Query: 174 SYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLI 233 +Y D LT L NR ++ L + A+ + + F+DLD FK IND GH+ GDL LI Sbjct: 770 AYYDPLTKLANRTLAYDRLQHAITNAKSRRRLVSVLFLDLDKFKNINDTLGHDIGDLLLI 829 Query: 234 QVGERLNTLQQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLY 292 +V +R+ L + + RLGGDEFLV+ + + S+ + I + ++L + Sbjct: 830 EVAKRIQALCSQSDTVCRLGGDEFLVILEDITHYETAISVAKGIIAALSQPFYLEGRTI- 888 Query: 293 YPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 S+GI + + L ADIAMY+ K + + + + AL Sbjct: 889 STSTSIGITYYPNDGDTMKTLLKNADIAMYRSKTNGRGSYEIFTTAL 935 >UniRef50_A4ACX6 Sensory box/GGDEF/EAL family protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4ACX6_9GAMM Length = 793 Score = 337 bits (865), Expect = 4e-91, Method: Composition-based stats. Identities = 78/336 (23%), Positives = 132/336 (39%), Gaps = 28/336 (8%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 V ++ ++ S E R+ L V + D + R++ + A + Y Sbjct: 219 RESVICAVGRDISQEHAARRGLFQAAAVFKNSGEGILISDKDGRIRDVNAAFSRITGYSR 278 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 E+ + SL + + F++D T DG + G + Sbjct: 279 ED-AIGQPTSLLRSGRHDGDFYAD-------------------MWQT--LQRDGVWRGEI 316 Query: 126 CAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 + E + G ++ + QL+E L ++ D LT LPN Sbjct: 317 WNRRKSGTVFPELLTISKIDGPDG---GFMAIFTDISQLKETEEQLQKLAHYDPLTNLPN 373 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R + E L A+ + + + F+D+D+FK IND GH +GD L RL L + Sbjct: 374 RFLVNECLEHSIRRAQRRSDHLAVFFLDIDSFKNINDSLGHFAGDKLLKTTANRLKALLR 433 Query: 245 NGEVIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 + + +GR+GGDEFL+V + D + + E+I +R L + AS+GI Sbjct: 434 DDDSVGRIGGDEFLMVLDDISTPDDATHIAEKIIGALRKPMILEGRSISV-SASIGISIY 492 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 + A++ + AD AMY K + T L Sbjct: 493 PEDGQTAETLMSNADAAMYNAKDQGRDTFRFYSEHL 528 >UniRef50_C5V4E4 Diguanylate cyclase with PAS/PAC sensor n=2 Tax=Gallionella ferruginea ES-2 RepID=C5V4E4_9PROT Length = 352 Score = 337 bits (865), Expect = 4e-91, Method: Composition-based stats. Identities = 72/332 (21%), Positives = 122/332 (36%), Gaps = 21/332 (6%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 ++ + K L + Q E + + + + + E Sbjct: 25 LTAASVKLAKLARELHQSEERWKFALEGAGEGVWDWSIPQNTVTLSP-------RYKEIV 77 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFL-STPIHLPDGSFYGTLCA 127 S + + + D+ + T++ I DG+ L Sbjct: 78 CYSDEDTTAHQTTWHQHIHPDDRAEVDASIQNYLAGNGTSYYNEHRILCRDGAVKWVLA- 136 Query: 128 ASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 R + G + I + + + + L ++ D LT LPNR Sbjct: 137 ----------RGMIISHGANGKPLRMIGTLSDITVRKNIDERLRYMAHYDPLTNLPNRAL 186 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + E L AR + + F+DLD FK +ND GH +GD L QV RL + + + Sbjct: 187 LSERLQQSVVRARRDQSTMALMFLDLDKFKPVNDTLGHETGDQLLQQVAVRLLSCVRASD 246 Query: 248 VIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 I R+GGDEF+V+ + D + + E+I + + +G+ ++ G S+GI Sbjct: 247 TIARIGGDEFVVLLHAIDQEPDAAMVAEKILHSLNRPFSIGEHEIRISG-SIGIAAYPQH 305 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHPA 338 TD L ADIAMYQ KK + + Sbjct: 306 GTDEKLLLINADIAMYQAKKEGRNSYRFFTQE 337 >UniRef50_A2SDI4 Signal transduction protein n=2 Tax=Proteobacteria RepID=A2SDI4_METPP Length = 1006 Score = 337 bits (864), Expect = 5e-91, Method: Composition-based stats. Identities = 73/337 (21%), Positives = 127/337 (37%), Gaps = 28/337 (8%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 V + + +++ L + E +E+ + D R+ ++ Sbjct: 424 VLKDVTEQKRLALELAAEKERIEVTLHSIGDGVISTDEAGRITYLNPVAEQMVG------ 477 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL--- 125 C A F+ V + A + L D YG Sbjct: 478 --------CLLAQARGLPFAQVVQLFDQESGAPLPSPVEQCL------QDREVYGVRESA 523 Query: 126 CAASSEKRQWS-ERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 R + + + + G + + V + R + ++ D LTGLPN Sbjct: 524 ALRHRSGRDYGVQISAAPIAGRDGRVLGAVMVFQDVTEARGLAQKMSYLAHHDGLTGLPN 583 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R + + R + + F+DLD+FK +ND GH GD L V +RL + Sbjct: 584 RVLFQDRVHQACQSGRRHGRRFAVIFMDLDHFKHVNDSLGHAVGDELLKAVAQRLTGALR 643 Query: 245 NGEVIGRLGGDEFLVVSLNNENADISSLRE---RIQQQIRGEYHLGDVDLYYPGASLGIV 301 + I RLGGDEF+V+ + ++ ++ + E +I +Q+ LG ++ GASLGI Sbjct: 644 ASDTICRLGGDEFVVLLSDLDDVEVDGVAEVAKKILRQVAQPCVLGGTEVNV-GASLGIA 702 Query: 302 EVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPA 338 + D D+ + AD AMY+ K+ + A Sbjct: 703 LFPGDGEDPDTLMKRADAAMYRSKREGRNRYHFFSKA 739 >UniRef50_A4TX60 PAS:GGDEF n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TX60_9PROT Length = 961 Score = 337 bits (864), Expect = 5e-91, Method: Composition-based stats. Identities = 75/338 (22%), Positives = 132/338 (39%), Gaps = 28/338 (8%) Query: 10 SQSLAKEQSLESLVRQLLE---MLEMVTDMESTYLTKVDVE-ARLQHIMFARNSQKMYIP 65 Q K QSL + +L E + D + + + RL + + MY Sbjct: 386 RQVAHKTQSLTLALDELAESEGRFRTIFDHVNDAIFIHRADTGRLLMVNQR--MRDMYGM 443 Query: 66 ENFTVS-WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGT 124 + V D +C + +V R + DGS + Sbjct: 444 GDLPVDRIDVGMCSAGVSPYGAAEAQVWLRAAAAGQPQQFDWHA------RRLDGSLF-- 495 Query: 125 LCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 W E + ++ + G + + + + + A L ++ D LT LPN Sbjct: 496 ----------WVEVSMRLARFSDGQ-NRLLVVVRDITERKNAQDRLEFMAHHDPLTELPN 544 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R + + + +LA ++ + F+DLD FK +ND GH +GD L V RL + Sbjct: 545 RLLLQDRVDRAIALAEREGRRVALMFLDLDQFKTVNDSLGHAAGDRLLKDVAWRLRQCVR 604 Query: 245 NGEVIGRLGGDEFLVVSLNNENAD-ISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 + I RLGGDEF++V +AD + + E+I + + + ++ S+GI Sbjct: 605 ESDTIARLGGDEFVIVLNAVRDADGVVEVAEKIHKSVAPPITIEGQEV-TSTLSMGIAMF 663 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 + D D+ + AD AMY K+ + T +++ Sbjct: 664 PEDGHDFDTLMKKADAAMYHAKESGRSTYRFFAARMNA 701 >UniRef50_C4L987 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L987_TOLAT Length = 1098 Score = 337 bits (864), Expect = 5e-91, Method: Composition-based stats. Identities = 78/334 (23%), Positives = 125/334 (37%), Gaps = 28/334 (8%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 V + ++++ E +RQ +V + + D E + + A Y Sbjct: 512 GVMTDITQQKNNELQLRQ----AAIVFESTREGIVITDAERNIIKVNRALIDLFGYPENE 567 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 F S + + + G + G + Sbjct: 568 LLGQRP----------RIFHSGKHDGHFYQQMLQA------------LDEHGFWRGEMWN 605 Query: 128 ASSEKRQWSERA-EQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 + G I YI + QL+++ A L + D LTGLPNR Sbjct: 606 RRQNGELLPMMTSINPVCDSNGEILYYISIYTDISQLKDSEARLEHMALHDPLTGLPNRA 665 Query: 187 AIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNG 246 + + L + A + ++ + +DLD+FK +ND FGH+ GD L QV RL + Sbjct: 666 MLGQKLDSALQHAMLNSTRVALLMLDLDHFKNVNDSFGHHFGDELLHQVSARLKQQLRES 725 Query: 247 EVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDP 305 +V+ RLGGDEF V+ NN D+S L ERI + + L + G S+GI Sbjct: 726 DVVCRLGGDEFTVLLQNNPSPDDVSLLAERIIHALHQPFLLSNAREVMIGTSIGISLYPE 785 Query: 306 ETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 + A+ + AD AMY+ K + L Sbjct: 786 HGSTAEELMQQADTAMYRAKHDGRDGYRYFSEEL 819 Score = 43.5 bits (102), Expect = 0.011, Method: Composition-based stats. Identities = 20/167 (11%), Positives = 45/167 (26%), Gaps = 22/167 (13%) Query: 10 SQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQK-MYIPENF 68 L + + + + L E V D T L + + + + N Q+ Y ++F Sbjct: 385 LDMLLQAKERANALIALQNAAE-VIDASPTILFRWQPNSSWKMEYVSSNVQRWGYQADDF 443 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTF-LSTPIHLPDGSFYGTLCA 127 + + +++ W + I + L + G + Sbjct: 444 IN-------GKLTMSDLLHPEDLQRVWAEVIHHIETRHKEYILECRVRTAAGEYL----- 491 Query: 128 ASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 W E G ++ + Q + L + Sbjct: 492 -------WVENHVTTSFDRKGKPQRFTGVMTDITQQKNNELQLRQAA 531 >UniRef50_C6ME82 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Nitrosomonas sp. AL212 RepID=C6ME82_9PROT Length = 1136 Score = 337 bits (864), Expect = 5e-91, Method: Composition-based stats. Identities = 63/318 (19%), Positives = 121/318 (38%), Gaps = 26/318 (8%) Query: 25 QLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDEN 84 + L+ V + + D++ R+ I A Y E + + + K + Sbjct: 564 ESLKQAAAVFESTREGVVITDLQPRIVAINRAYAEITGYSEEQV-LGKNPRIIKSGRHDK 622 Query: 85 CFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSER-AEQVL 143 F+ ++ G + G + + + + Sbjct: 623 LFY-------------------QAMWAS--LTKAGYWRGEVWNRRRSGDIYPQWLTISTV 661 Query: 144 QLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLN 203 Y+ + Q++++ A L ++ D+LTGLPNR + L Sbjct: 662 FNDRNEPCNYVGVFTDITQIKQSEARLAHLAHYDALTGLPNRLLVQSRLHHAIERTLRHG 721 Query: 204 HKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLN 263 ++I ++DLD FK +ND GH GD L+ + RL + + + RLGGDEFLVV + Sbjct: 722 NQIAALYLDLDRFKNVNDSLGHPIGDELLVMLALRLKKRLREEDTLARLGGDEFLVVLED 781 Query: 264 N-ENADISSLRERIQQQIRGEYHL-GDVDLYYPGASLGIVEVDPETTDADSALHAADIAM 321 ++ + + + + + + + L +++ S+GI + + AD+AM Sbjct: 782 IKDSNEPAMVAQTLIDLLATPFSLPSGHEIFINT-SIGISLFPTDANSVTELIQHADMAM 840 Query: 322 YQEKKHKQKTPFVAHPAL 339 Y K+ + T AL Sbjct: 841 YLAKQEGRNTYRYHTDAL 858 Score = 83.2 bits (205), Expect = 1e-14, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 6/171 (3%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 Q + Q L +++ + + LE + + +D A + Y Sbjct: 401 QAHQSALNLIVANQPLPVILKDIAQRLESINPEMLVSILLLDQHTGRLKHGEAPSLPDDY 460 Query: 64 IP--ENFTVSWDYSLCKRAI--DENCFFSD-EVPDRWGDCIAA-RNLGITTFLSTPIHLP 117 + + C + E +D + W + R + + P Sbjct: 461 NAAIDQLKIGEGIGSCGTSAWRGEPVIVADIDHHPYWQSYLELTRKANLHACWTIPFKND 520 Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANA 168 G GT R+ S+ ++ FA L A +QK E L++A A Sbjct: 521 AGKVLGTFAIYHRTPREPSQADLGLINEFALLTALAVQKVYAAESLKQAAA 571 Score = 41.2 bits (96), Expect = 0.050, Method: Composition-based stats. Identities = 19/186 (10%), Positives = 47/186 (25%), Gaps = 30/186 (16%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 + V L K +LE ++ ++ ++ RL ++ A + + Sbjct: 233 LHMGVDDYLTKHAGYLYETTAILEKVQHQAELARERISLKKTSLRLSDLLAASPTILYNL 292 Query: 65 ---------------PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTF 109 E + D+ +G T+ Sbjct: 293 RVVGTTFQLVWVSENIERLLGYTQEEVMAEGWWNLHVHPDDREAALTHQSELLAVGQLTY 352 Query: 110 LSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAA 169 + +G W ++++ G + + V + + Sbjct: 353 -DYRLLHRNGQ------------SVWIHDELRLVRSINGKPLEVVGAWLDVSEHKRTE-- 397 Query: 170 LIAQSY 175 LI Q++ Sbjct: 398 LIRQAH 403 >UniRef50_A0KRF8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=12 Tax=Shewanella RepID=A0KRF8_SHESA Length = 1077 Score = 336 bits (863), Expect = 6e-91, Method: Composition-based stats. Identities = 78/337 (23%), Positives = 138/337 (40%), Gaps = 25/337 (7%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 +AR++Q++ + S L V + + + D + ++ I A + Y Sbjct: 487 LARMAQAMNRMISERQKANHALSRAAAVFNYSAEGIMVTDADNHIELINPAFSQITGYSL 546 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 E S+ + +++ +G + G + Sbjct: 547 EEVK-GRSPSILSSNRHPHHYYT-------------------AMWEA--LHKEGKWEGEI 584 Query: 126 CAASSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 + + + E A V++ G I Q+I + + ++ L Q+ D+LTGLPN Sbjct: 585 WNKRKDGQVYPEYLAITVVRNEQGEIIQHIGLFMDISKRKQYEQDLWYQANFDTLTGLPN 644 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R+ E L LA+H + K+ I IDLD FK IND GH +GDL L V +RL + Sbjct: 645 RKLFNERLQHEIQLAQHDSRKLAILLIDLDQFKYINDVQGHATGDLLLQDVAKRLENIAG 704 Query: 245 NGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 + + R+GGDEF+++ N I + RI + + ++L + ++ AS GI Sbjct: 705 KNDFVARIGGDEFVLILPRVTNEFAIEHMASRIIETLATPFNLNEREIQI-SASFGIGVY 763 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + D S ++AMYQ K + ++ Sbjct: 764 PEDGLDVSSLTRNTEMAMYQAKDAGRNNFKYFTSGMN 800 >UniRef50_Q5NWP7 Sensory box protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NWP7_AZOSE Length = 728 Score = 336 bits (863), Expect = 7e-91, Method: Composition-based stats. Identities = 65/332 (19%), Positives = 130/332 (39%), Gaps = 29/332 (8%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 V Q + + + + +R + V + D + + A Y E Sbjct: 137 VFQDITERKRTDEALR----LWASVFANSREGIAITDRNGIILDVNEAFVRITGYGREEV 192 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + + + + ++ F+ W A N + G + Sbjct: 193 -IGQNPRILQSGRHDSAFY----AGMWESLYKASN-----------------WCGEIWNR 230 Query: 129 SSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + + + ++ ++ YI + Q++ L +Y D LTGL NR Sbjct: 231 RKDGEIYPQWLNISAVRDEESEVSHYISVFMDLSQIKSNEKRLELLAYFDPLTGLANRTL 290 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + +++ + +R + + ++DLD FK +ND+FGH GD FL ++ +R+ ++ + + Sbjct: 291 LADHMRMAIARSRRESTLFALGYLDLDGFKPVNDQFGHEVGDQFLQEIAKRIKSVVRGDD 350 Query: 248 VIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 + RLGGDEF+++ + + ER+ ++ L L G S+G+ + Sbjct: 351 TVARLGGDEFVILVQGLRKPEECHHTFERLLAKLEEPIQLNGHHLTATG-SIGVTLFPCD 409 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHPA 338 D D+ L AD AMYQ K+ + + Sbjct: 410 EADPDTLLRHADHAMYQAKEAGKNRIHLYDTE 441 Score = 54.7 bits (131), Expect = 5e-06, Method: Composition-based stats. Identities = 19/155 (12%), Positives = 39/155 (25%), Gaps = 20/155 (12%) Query: 17 QSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSL 76 Q+ ++ EM ++ + S + +D + + A Y P+ W L Sbjct: 18 QTRRIEMQADEEMYRLIVNEISDGILVLDADFVARFANPAMLRILGYSPDELDGVWAGDL 77 Query: 77 CKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWS 136 W + T G+ Y +WS Sbjct: 78 V-----------------WSEAEDLGRFAEET--EKRRRGESGN-YELRWRRKDGSARWS 117 Query: 137 ERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 + G + + + + + AL Sbjct: 118 RISATARFDPDGQFDGSLIVFQDITERKRTDEALR 152 >UniRef50_Q2BN03 Sensory box sensor/GGDEF/EAL domain protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BN03_9GAMM Length = 923 Score = 336 bits (862), Expect = 8e-91, Method: Composition-based stats. Identities = 73/334 (21%), Positives = 136/334 (40%), Gaps = 29/334 (8%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 ++ ++ + E + + S + D ++++ I A Y E+ Sbjct: 350 GFARDVSDRKHAAER----QRKAEAIFNSASEAILLSDAYSKVKMINPAFTKITGY-EES 404 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 + + S+ + F+ +G + G + Sbjct: 405 EIIGQNASMLSSGQHDKEFYRTMYA---------------------ALETEGLWQGEVHN 443 Query: 128 ASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 + + L+ G + +Y+ + + + +EA + ++ D LTGLPNR Sbjct: 444 RKKNGELYVQWQTVVALKDGNGNVDEYLAIFSDITEKKEAEEEIKYRANYDQLTGLPNRT 503 Query: 187 AIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNG 246 + E L +R + K + F+DLD+FK IND GH GDL L V E L + Sbjct: 504 LLHELLRQELQHSRRESKKCAVMFLDLDHFKRINDTLGHAVGDLLLQTVSELLQETIRES 563 Query: 247 EVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDP 305 +V+ RLGGDEF+V+ + +NA DIS++ E+I + + D ++ S+GI Sbjct: 564 DVVARLGGDEFIVILSDVDNATDISTVAEKIVSVLDTPLSIDDHEIRTCT-SIGIAVYPD 622 Query: 306 ETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 + + L AD+AMY+ K+ + + + Sbjct: 623 DAFEEGELLSHADMAMYKAKESGRGQYRFFNADM 656 >UniRef50_D2UAD2 Hypothetical c-di-gmp phosphodiesterase or signal transduction protein n=1 Tax=Xanthomonas albilineans RepID=D2UAD2_XANAL Length = 864 Score = 336 bits (862), Expect = 9e-91, Method: Composition-based stats. Identities = 72/346 (20%), Positives = 139/346 (40%), Gaps = 15/346 (4%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 M + + V ++ +EQ L + + E + T + VD + H++ A + Sbjct: 262 MHEVLHKNVLDAMVREQPLVDVATLICREFERIAPQLLTSIFSVDSNSN-LHLLVAPSMP 320 Query: 61 KMYIPE--NFTVSWDYSLCKRAIDEN--CFFSDEVPDR-WGDCI-AARNLGITTFLSTPI 114 ++ + N + + AI D D + D L + T ++TPI Sbjct: 321 ELLRQKVGNVPIGPNVGASGSAIWRGKQVMVKDAQRDELFADYRSLTEELHLGTCVATPI 380 Query: 115 HLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 G G+ E + ++++L L A + + + + + Sbjct: 381 KSSGGRVLGSFALYYREVCEPLPWHMRLIELCVHLCALAM-------EREQTKERVHQLA 433 Query: 175 YTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQ 234 + D+LT LPNR + A + + I F+D+D FK +N+ GH++GD L Sbjct: 434 FYDALTNLPNRVMFSARAEQALADAEYHGSPVAILFVDIDRFKRVNETQGHHAGDGLLRD 493 Query: 235 VGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYP 294 + +RL +++ R GDEF+++ + ER+ + +G V L+ P Sbjct: 494 IAQRLTEEMGVTDLLSRQSGDEFVMMLPQCGAEQAAGTAERLLLALAEPVVVGHVTLH-P 552 Query: 295 GASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 AS+G+ + D ++ L AD+AMY+ K + ++ Sbjct: 553 SASIGVAMFPEDGDDIETLLRHADLAMYRAKDEGGGSFRYFSSDMN 598 Score = 46.6 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/164 (9%), Positives = 41/164 (25%), Gaps = 24/164 (14%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 + + ++ E+ ++ +R L LE + + D + + ++ + Y Sbjct: 125 PLQVLQVRDISAERERDTKMRLLSLALER----SDSAIMLCDKDLHILYVNAGFSRVFGY 180 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 + + + S +L + STP+ Sbjct: 181 DTKEILGKLPSGVLPGPGSDMQVVSQTRERMRAGFGHQVDLLVYRKDSTPL--------- 231 Query: 124 TLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREAN 167 W + G + Y+ + + Sbjct: 232 -----------WITMVANPITEEDGSVQHYMLSFTDITHSKMHE 264 >UniRef50_Q2YAT8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=4 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2YAT8_NITMU Length = 705 Score = 335 bits (861), Expect = 1e-90, Method: Composition-based stats. Identities = 68/331 (20%), Positives = 119/331 (35%), Gaps = 27/331 (8%) Query: 10 SQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFT 69 +++ + + L + + + + D+ + Y Sbjct: 140 LRNITERREA----DAYKAQLAAIVESSNDAIIVQDLNGIITSWNAGAEGLFGYRASEVI 195 Query: 70 VSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAAS 129 S ++ + GD + G F Sbjct: 196 GSSVE----------ILIPPDLREEEGDIMCLIKSGRRA----------DHFETVRWGKG 235 Query: 130 SEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIF 189 + ++ AG I + + Q +E+ + ++ DSLTGLPNR + Sbjct: 236 RKP-IDVSVTISAMKDRAGNIIGASKIVRDITQRKESQERIEYLAHYDSLTGLPNRTLLS 294 Query: 190 ENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVI 249 + L AR + ++ + F+D+D FKL+ND GH GD L V +R+ + + + + Sbjct: 295 DRLRIAIENARRYSIRLALLFVDIDRFKLVNDSLGHEIGDKLLKAVAQRMQSTVRQADTV 354 Query: 250 GRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETT 308 R+GGDEF+V+ E A D + E++ I Y + + +L AS+GI Sbjct: 355 SRVGGDEFVVLLSRIETATDAARSAEKLITSISQPYQIEEHELL-LTASIGISIYPDNGK 413 Query: 309 DADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 DA S AD AMY K + L Sbjct: 414 DASSLTRNADAAMYSAKGQGRNRYQFYSEDL 444 >UniRef50_C4LDT9 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LDT9_TOLAT Length = 753 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 73/343 (21%), Positives = 123/343 (35%), Gaps = 29/343 (8%) Query: 5 IIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYI 64 ++ + Q + E ++ L + + +D + + N+Q Sbjct: 176 LLGLMLQDIINRTKTEQALQDSESRLRAIVQAIPDLMVIIDEDGHYLDALPTTNNQFYPR 235 Query: 65 PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGT 124 S +S E DR I + + L Sbjct: 236 ALALIGSNLHS----------ELPPETADR-----------ILATVRDSLRLQQTQTI-E 273 Query: 125 LCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 ++ E Q L I + + + ++ D LTGLPN Sbjct: 274 YERDFKMGQRLVEGRAQPLGYTVNNKQVVIFLARDITDRKIKEDEIAWLAFYDPLTGLPN 333 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 RR + + L + ++ + + FIDLDNFK +ND GH+ GDL L QV RL + Sbjct: 334 RRLLQDRLHQAMAGSKRSGQRAALLFIDLDNFKTLNDTLGHDKGDLLLQQVATRLFECVR 393 Query: 245 NGEVIGRLGGDEFLVVSLNNEN------ADISSLRERIQQQIRGEYHLGDVDLYYPGASL 298 + + RLGGDEF+V+ + A + E+I ++ Y + + + AS+ Sbjct: 394 ECDTVARLGGDEFVVMLEELNHSEELAAAQSKMVGEKILVKLCQPYLIAGYE-HNSSASI 452 Query: 299 GIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 GI +D + ADIAMYQ K + T + + Sbjct: 453 GITLFLAHQESSDELMKRADIAMYQAKSAGRNTLRFFDNKMQA 495 >UniRef50_A1ATC4 Periplasmic sensor diguanylate cyclase/phosphodiesterase n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ATC4_PELPD Length = 876 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 71/320 (22%), Positives = 123/320 (38%), Gaps = 27/320 (8%) Query: 24 RQLLEMLEMVTDMESTYLTKVDVEAR-LQHIMFARNSQKMYIPENFTVSWDYSLCKRAID 82 + + V S + VD+++R + A Y P+ T Sbjct: 307 KDTEKRYRSVISQASDIILLVDIDSRRILEANLAFQRLLNYAPDKAT------------- 353 Query: 83 ENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQV 142 + D D + + I LS + F G + + E Sbjct: 354 -----QLTLYDIMEDDRSGVDWRINRILSEKVC-----FLGEHTVRAEDGSM-VEVDLNA 402 Query: 143 LQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHL 202 + G + + + L+ ++ D+LTGLPNR F+ L Sbjct: 403 NLVSYGEQQVICMVLRDISERKRFEGELMHMAHHDALTGLPNRTLFFDRLRQGLYKKERS 462 Query: 203 NHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSL 262 + + ++DLD FK+IND GH++GD+ L +V +RL + + + I RLGGDEF ++ Sbjct: 463 GKMLAVIYLDLDRFKIINDTLGHHTGDMLLKEVADRLRGVVRKADTISRLGGDEFTIIID 522 Query: 263 NN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAM 321 AD + E+I + L +++ AS+G+ + A+ L AD AM Sbjct: 523 EIATPADSLLVAEKILHVFSAPFRLEKHEMFI-TASMGVTLYPNDGDTAEKLLKNADTAM 581 Query: 322 YQEKKHKQKTPFVAHPALHS 341 Y K+ + T ++S Sbjct: 582 YHAKEEGRNTYQFFSEEMNS 601 >UniRef50_C5T198 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T198_ACIDE Length = 948 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 63/334 (18%), Positives = 128/334 (38%), Gaps = 28/334 (8%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 +S+ + + +R+L +E + ++ +++++ + + Y + Sbjct: 377 LSRDVTQRMQDLDALRKLRHAVEQ----TPHSIIITNLRGQIEYVNPSFTTVTGYGSDEV 432 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 R + ++ V W ++ ++ G L Sbjct: 433 MGRNP-----RMLGAGKTSAEVVAQMWERLLSGL-----------------AWKGELLNR 470 Query: 129 SSEKRQ-WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 R+ W + ++ G I YI + + + + + + D+LTGLPNR Sbjct: 471 HKTGREVWEYVSISPMRDEQGAITHYISVQEDISERKSNEERIRHLANFDALTGLPNRAM 530 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + L++ + + ++DLD FK +ND G+ GD LI V RL L ++ + Sbjct: 531 FSARFSQALGLSQRSEGSLALLYLDLDRFKNVNDSLGYAVGDGVLIDVAHRLKALLRDED 590 Query: 248 VIGRLGGDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPET 307 + R GGDEFLVV ER+ ++ + L S+GI + Sbjct: 591 TVSRYGGDEFLVVLPLTTAQGAVHFAERLHGELSKACQVESHALLV-TFSVGIAMYPGDG 649 Query: 308 TDADSALHAADIAMYQEKKHKQKTPFVAHPALHS 341 +D ++ H A++AMY+ K+ + + + Sbjct: 650 SDMEALTHHAEVAMYKAKEMGRDHYCFFSADMQA 683 >UniRef50_B3E8F7 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Geobacter lovleyi SZ RepID=B3E8F7_GEOLS Length = 461 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 70/336 (20%), Positives = 135/336 (40%), Gaps = 28/336 (8%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 + A + + ++ E+ +R+L +E + + + ++++ A + Y Sbjct: 141 TMRASTLRDVTARRAKEAQLRKLSAAVEH----SPASIVITNRDGAIEYVNPAFSRLTGY 196 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 + + + + K F+ + W + L + G Sbjct: 197 SMQE-ALGQNPRILKAGDQPEEFY----RELWA-----------------VLLRGEEWRG 234 Query: 124 TLCAASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGL 182 + + E + + G I ++ + + + +E L + D LTGL Sbjct: 235 EFHNKRKDGSLFWEMASISPILNNKGEIISFVAVKENITERKELRDRLEQMAQFDMLTGL 294 Query: 183 PNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTL 242 PNRR + L+ ++A+ + + F+DLD FK IND +GH +GD L V RL Sbjct: 295 PNRRMFLDRLSQTVAIAQRTEQRFALLFVDLDGFKRINDSYGHEAGDRVLKTVAARLAAC 354 Query: 243 QQNGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIV 301 + + +GR+GGDEF ++ + D + ++I + L D G+S+GI Sbjct: 355 IRMSDTVGRMGGDEFTIILSTLAHYEDAGQVADKILDALSRPITLPDGQQDTVGSSIGIS 414 Query: 302 EVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHP 337 + D D L AD AMY+ K++ + + H Sbjct: 415 VFPEDAQDGDGLLATADDAMYKVKRNGKNSYCFYHS 450 >UniRef50_Q0AIX2 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=6 Tax=Proteobacteria RepID=Q0AIX2_NITEC Length = 791 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 69/326 (21%), Positives = 128/326 (39%), Gaps = 31/326 (9%) Query: 22 LVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAI 81 + L + V + D+E R+ + A Y E + + + K + Sbjct: 224 RATEALRLSATVFASIREGVVITDLEPRIVAVNRAYMRITGYSEEQV-LGKNPKIIKSGL 282 Query: 82 DENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSER-AE 140 + F+ +T G + G + + + Sbjct: 283 HDKTFY-------------------QAMWAT--LKATGHWSGEVWNRRKNGEIYPQWLTI 321 Query: 141 QVLQLFAGLIA-----QYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTL 195 + + + Y+ + Q++++ A L ++ D LTGLPNR L Sbjct: 322 NAVCIDSSCCDESNSCNYVGVFTDISQIKQSEAQLAQLAHYDPLTGLPNRLLAQSQLHQA 381 Query: 196 FSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGD 255 A+ + + +IDLD FK +ND GH GD LI++ ER+ + + + RLGGD Sbjct: 382 IERAQRHGRLVGVLYIDLDRFKNVNDSLGHPVGDELLIKLAERMKKRVREEDTLARLGGD 441 Query: 256 EFLVVSLNN-ENADISSLRERIQQQIRGEYHL-GDVDLYYPGASLGIVEVDPETTDADSA 313 EFL+V + + D + + + + + + L +++ AS+GI + ++A Sbjct: 442 EFLLVLEDVRDLGDPAFVAQSLINLLTSPFVLPSGHEIFIN-ASIGISLFPEDASNATEL 500 Query: 314 LHAADIAMYQEKKHKQKTPFVAHPAL 339 + +D+AMYQ KK + T AL Sbjct: 501 IQHSDMAMYQAKKEGRNTYRYHTEAL 526 Score = 77.4 bits (190), Expect = 6e-13, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 48/167 (28%), Gaps = 6/167 (3%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 Q + QSL ++ + + LE + + +D + + + A + Y Sbjct: 64 QAQQSALDLIVTNQSLPVILSDIAKHLEAINPDMLVSILLLDKQTKRLKLGAAPSLPDDY 123 Query: 64 IP--ENFTVSWDYSLCKRAIDENCFFSD---EVPDRWGDCI-AARNLGITTFLSTPIHLP 117 + C A + W + R + S P Sbjct: 124 NAAVNGQEIGEGVGSCGTAAFRGETVIVSDIDHHPHWQHFLDLTRKADLHACWSLPFKDE 183 Query: 118 DGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLR 164 G + S + ++++ FA A +QK E LR Sbjct: 184 HNDVLGIFAIYHHIACEPSPKDLELIREFASFTALAVQKVRATEALR 230 >UniRef50_B0CD40 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0CD40_ACAM1 Length = 1197 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 74/335 (22%), Positives = 126/335 (37%), Gaps = 25/335 (7%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 V ++A + LE +Q ++ + + S + K D+ ++ A + Sbjct: 325 GVLTNIADFKRLEENAQQQIDHYQTLLADISIVIFKTDLAGHWTYLNPAWSKLTG----- 379 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTF-LSTPIHLPDGSFYGTLC 126 +S + SL K D D+ P ++ G Sbjct: 380 --ISLEDSLGKPIWD--FVHPDDRPGLQEAFHNLVEQTSESYNHELRFFCQQG------- 428 Query: 127 AASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 W V++ G + ++ AL+ + D LT LPNR Sbjct: 429 -----GCAWVVVHNHVIRAEDGTCIGTAGTLEDASERKQTEQALLHDALHDGLTQLPNRV 483 Query: 187 AIFENLTTLFSLARHL-NHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQN 245 + L + + + F+DLD FK+IND GH GD L+ V RL T + Sbjct: 484 LFMDRLEQACRSFQRHPDEIFAVLFLDLDRFKIINDTLGHMVGDQLLVAVAHRLQTCLRP 543 Query: 246 GEVIGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVD 304 + + RLGGDEF ++ N + D + +RI Q ++ + L +++ S+GI Sbjct: 544 EDTVARLGGDEFTLLLPNIDQAEDAMHISDRILQSLKEPFTLDHTEVFI-TVSIGIAMSG 602 Query: 305 PETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 D L ADIA+Y+ K + + V P + Sbjct: 603 NPEQKPDDLLRHADIALYRAKANGKGCYAVFSPEM 637 >UniRef50_Q46T37 PAS:GGDEF n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46T37_RALEJ Length = 707 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 84/328 (25%), Positives = 133/328 (40%), Gaps = 24/328 (7%) Query: 14 AKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWD 73 + Q +R+ + L V + + + +D L + A + Sbjct: 258 TERQRANEALRESEQRLRTVIETQPECVKTIDRSGNLLEMNAA----------GLAMIGA 307 Query: 74 YSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKR 133 SL + E D + A G + L I G R Sbjct: 308 DSLAQAQRHYTEVILPEYRDAFAALHARVMSGESGLLEFEIVGLRGQ------------R 355 Query: 134 QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLT 193 +W E ++ G + + + ++A+ + ++ D+LTGLPNRR + Sbjct: 356 RWLETHATPMRGADGCVTRLLAVTRDTTDRKQASDRIQHLAHYDALTGLPNRRLVENRAR 415 Query: 194 TLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLG 253 FS A H + I F+DLD FK IND GH++GD LI++ RL L G+V+ R G Sbjct: 416 QAFSQAS-DGHTLAIMFLDLDLFKDINDTLGHSAGDASLIELARRLRPLLSEGDVLARFG 474 Query: 254 GDEFLVVSLNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSA 313 GDEFL++ + + +++ I YHLG DL G S+GI + TD +S Sbjct: 475 GDEFLILLPDACERTAAQTAQKVLDTIAEPYHLGPYDLTVSG-SIGIALYPRDGTDFESL 533 Query: 314 LHAADIAMYQEKKHKQKTPFVAHPALHS 341 AD AMY KK ++ P + + Sbjct: 534 SKNADTAMYHVKKQGRRGYCFFTPQMQA 561 Score = 48.5 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 56/178 (31%), Gaps = 13/178 (7%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFA----RNS 59 +++ +Q++A+ +S L + + M+ T++ +D RL + Sbjct: 94 SALSQCNQAIARCRSESELFEDICRAAVTIGGMQMTWIGLLDDSKRLMPLAVHGQGMEYL 153 Query: 60 QKMYIPENFTVSWDYSLCKRAIDE------NCFFSDEVPDRWGDCIAARNLGITTFLSTP 113 + + + + A+ +D W ++ G +F P Sbjct: 154 RDLKVSADEADPHGRGPTGLALRSDSPYWCQDVHADSATVLWR--TQSQRFGWKSFAVLP 211 Query: 114 IHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 +H D G L S + +L I + + + AN AL Sbjct: 212 LHRGD-RVIGALSLYGSLAYVFDAVVRDLLMDMVRNIDYALANLDRETERQRANEALR 268 >UniRef50_A9BRL9 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=cellular organisms RepID=A9BRL9_DELAS Length = 881 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 71/335 (21%), Positives = 126/335 (37%), Gaps = 29/335 (8%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 + +S+ + + + E + Q +V D + VD R+ + A Y Sbjct: 296 LFGISRDITERKRFERELAQ----AAVVFDSSHQGIMVVDPGRRITRVNPAFTRITGYAS 351 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 E+ R + + W DG ++G + Sbjct: 352 EDVIGKTP-----RVLSSGLHGPEFYRQIWAC-----------------IERDGFWHGEI 389 Query: 126 CAASSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 ++E + Q G I YI + ++ A L ++ D LTGLPN Sbjct: 390 WNRRKTGEIFAEMLSISAAQGAGGEIEHYIGVFTDISHIKAHEAELERVTHYDLLTGLPN 449 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 RR + + L + + F+DLD FK IND G +GD L+ V L ++ + Sbjct: 450 RRLLIDRLNQAMLRTAREGRSLAVCFLDLDGFKEINDLHGAAAGDALLVGVAAHLKSVLR 509 Query: 245 NGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 + + + RLGGDEF+++ + +++ +R+ + + D + ASLG+ Sbjct: 510 SEDTLARLGGDEFVLLLSHIGSAEHCATILDRVLEAASRPVPVQDR-VLSVTASLGVSLY 568 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPA 338 + D D L AD AM K+ + + P Sbjct: 569 PDDQADPDLLLRHADQAMCVAKQAGRNRYQLFDPE 603 Score = 50.8 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 21/174 (12%), Positives = 47/174 (27%), Gaps = 33/174 (18%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 +++ + + ++ + Q L+ V S + D+ R + A S Sbjct: 177 LAETLQRSLRKANMQRQLLD-----------SVISGTSDAVFVKDLRGRYLLVNRAAASL 225 Query: 61 KMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGS 120 E+ D++L I D+ R L + + + + G Sbjct: 226 VGRQAEDIVGKDDFALFPFGIASAIRRKDQAVLRQEVATHEEQLTVEPGRTLDLLVTKG- 284 Query: 121 FYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS 174 ++ AG IA + + + L + Sbjct: 285 ---------------------PVRNTAGHIAGLFGISRDITERKRFERELAQAA 317 >UniRef50_B1XZA8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=5 Tax=Bacteria RepID=B1XZA8_LEPCP Length = 1147 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 65/335 (19%), Positives = 114/335 (34%), Gaps = 28/335 (8%) Query: 7 ARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPE 66 + V L E +R + V D + D R+ + A + Y E Sbjct: 574 SGVLTDLTDRLQAEERLR----LAAQVFDSTQEGVMITDARRRIVSVNRAFTTLLGYT-E 628 Query: 67 NFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLC 126 + + + F+ G + G + Sbjct: 629 TEVLGQTPRMLSSGRHDRDFYEAMQAQ---------------------LDHTGLWQGEIW 667 Query: 127 AASSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNR 185 + E + ++ G + Y+ + L+E+ A L ++ D LT LPNR Sbjct: 668 NRHKDGSPVPELLSISAVRDPHGQVTHYVGVFTDITHLKESEARLEFLAHHDPLTHLPNR 727 Query: 186 RAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQN 245 L A ++ + +DLD FK IND +GH +GD L V +RL + Sbjct: 728 LLFNNRLDQALHQAEREGRRLAVLLLDLDRFKDINDSYGHLAGDELLKYVAQRLTQRLRQ 787 Query: 246 GEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVD 304 + + RLGGDEF ++ + + D + L + + + + G S+GI Sbjct: 788 SDTLARLGGDEFALLMHDLRHDDDAARLASELLSGLSEPWRSSEGVEVSVGVSIGICIYP 847 Query: 305 PETTDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 + L AD A+Y+ K + + Sbjct: 848 DHGRTPQTLLQGADAALYRAKGDGRGVYRYYADEM 882 Score = 52.4 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/171 (9%), Positives = 40/171 (23%), Gaps = 21/171 (12%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 +++ + E+ + +++ L + D L D+ A Y Sbjct: 449 IARDITAERDARAALQRSEASLRLAVDGSGDGLWDWDLITDKISFGAAYARLLRY----- 503 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 L + D+ + G + + DG + Sbjct: 504 ---PGNDLARDFRFRERLHPDDRDRSIAAVRNSIEYGTPFVATYRMRCFDGEYR---WFQ 557 Query: 129 SSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSY-TDS 178 + G ++ + +A L + DS Sbjct: 558 GRGMCH---------RDAHGTPQRFSGVLTDLTDRLQAEERLRLAAQVFDS 599 Score = 43.5 bits (102), Expect = 0.010, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 48/167 (28%), Gaps = 22/167 (13%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 V Q + + E + + L+ + + D++ R A E Sbjct: 168 VVQDITAVKQAEGDLLRQRRQLQQIIQSIPDCVAVRDLDGRYLLANPA--------AERL 219 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + +C R +++ + R D +A G+ ++ DGS Sbjct: 220 IGLSEAEICGRTLEQIYPEPEAGQARRADRLALSQNGLVRREAS-YTAADGSVATV---- 274 Query: 129 SSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSY 175 + A L G I V N L+ Q++ Sbjct: 275 --------DLAISPLLGIDGRATGIISVGRDVS-RERHNLRLLEQAH 312 Score = 40.8 bits (95), Expect = 0.076, Method: Composition-based stats. Identities = 13/156 (8%), Positives = 38/156 (24%), Gaps = 20/156 (12%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVS 71 + + + Q + + V + ++ ++ RL + E Sbjct: 44 LIRRAARAQEQAEQAHKRVADVVADAAVGISLTALDGRLTEVNRRFAEIVGRTVEET--- 100 Query: 72 WDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSE 131 +R ++ D++ I + + Sbjct: 101 ------QRLRFQDITHPDDLAADLDKVADLLAGRIDRYRMEKRY-----------LRPDS 143 Query: 132 KRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREAN 167 W + + G Q+I + +++A Sbjct: 144 STIWVTLTVSLARGADGQPRQFISVVQDITAVKQAE 179 >UniRef50_C5V180 Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V180_9PROT Length = 578 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 69/341 (20%), Positives = 131/341 (38%), Gaps = 42/341 (12%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 + + + +E +R E + D A + + A + Y PE Sbjct: 251 IRADITARKLIEDNLRIAAATFETH-----DAIVITDANANIIKVNKAFTTISGYQPEEV 305 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + + + + FF L DGS+ G + Sbjct: 306 -LGKNPRMMSSGRHDKAFFESLFDK---------------------VLHDGSWVGEIWDK 343 Query: 129 SSEKRQWSER-AEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + + ++ I+Q++ + + + ++ + +Y D LT LPNRR Sbjct: 344 RKDGEIYPRWMTITAVRDAEQKISQFVGIFSDITERKKNEELINKMAYYDPLTQLPNRRM 403 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + + L + + F+DLD FK +ND GH +GDL L++VG R+ + + + Sbjct: 404 LTDRLGRAMAANYRHAIYGAVMFVDLDRFKPLNDTHGHVAGDLLLVEVGRRIGSCIREMD 463 Query: 248 VIGRLGGDEFLVVSLN------NENADISSLRERIQQQIRGEYHL---GDVDL-----YY 293 + R GGDEF+V+ A+ S+ E+I+ + Y L L ++ Sbjct: 464 TVARFGGDEFVVMLSELNSDRTLSRAEAISVAEKIRVCLAETYFLKFKQGESLPVCVEHH 523 Query: 294 PGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFV 334 +S+G+V + + + + AD AMYQ K+ + + Sbjct: 524 CSSSIGVVLFNGQESSQEEIFKRADEAMYQAKEGGRNSVRF 564 Score = 48.9 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 22/167 (13%), Positives = 44/167 (26%), Gaps = 28/167 (16%) Query: 18 SLESLVRQLLEMLEMVTDME-STYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSL 76 SLE VR +E+ + ++ S + D+ + ++ S Y E + ++ + Sbjct: 133 SLEKSVRSEIELAQHKFALDQSAIVAFTDIRGTITYVNDLFCSISQYSREEL-IGKNHRI 191 Query: 77 CKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKR-QW 135 FF + G +C + + W Sbjct: 192 INSGTHPKDFFKTL---------------------YCAITHGRVWSGDICNRAKDGSLYW 230 Query: 136 SERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQS----YTDS 178 G QY A + + L + D+ Sbjct: 231 VSTTIVPFLDERGKPVQYCAIRADITARKLIEDNLRIAAATFETHDA 277 >UniRef50_B2JCW5 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=7 Tax=Bacteria RepID=B2JCW5_BURP8 Length = 1040 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 77/332 (23%), Positives = 132/332 (39%), Gaps = 28/332 (8%) Query: 12 SLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQ-HIMFARNSQKMYIPENFTV 70 + + + + +R L+ + +T+ E L ++ A Y P+ + Sbjct: 464 DITERKRADLALRLQSRALDASVNAIL--ITEPSKEGNLIEYVNPAFKRITGYDPQEV-I 520 Query: 71 SWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASS 130 D L +R DR + IAA + + L Sbjct: 521 GQDCRLLQR------------DDRDQEGIAAIRQALAA---------NREVSAVLRNYRK 559 Query: 131 EKR-QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIF 189 + W++ + G +I V L L Q+ DSLT LPNR + Sbjct: 560 DGALFWNQLYIAPVPDADGQTTHHIAVINDVTALIRYQEQLEYQANYDSLTRLPNRNLLR 619 Query: 190 ENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVI 249 + L +A+ + + + FIDLD FK +ND GH+ GD L V +RL + + + Sbjct: 620 DRLQHALIVAQRHHKGVAVVFIDLDGFKNVNDSLGHSVGDRLLSVVADRLARCARASDTV 679 Query: 250 GRLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETT 308 R GGDEF++V + + + + ER++ I L +LY G S+G + Sbjct: 680 ARHGGDEFVIVMTDTVDEQSLIAWMERVRASISEPVWLDGTELYV-GCSMGASLFPQDGD 738 Query: 309 DADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 DA++ + AD+AMY+ K + T P ++ Sbjct: 739 DAETLMKKADLAMYRAKDMGRNTFQFYQPEMN 770 Score = 50.1 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 50/174 (28%), Gaps = 22/174 (12%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 M + ++ + ++ + E+ ++ +MLE V D + D E R A Sbjct: 326 MGRPALFVLADDVTEQINAEAEAQRSNQMLETVIDNIPQRIFWKDKELRYLGCNMAFARD 385 Query: 61 KMYI-PENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDG 119 PE D + RA E D G + + DG Sbjct: 386 AGLAYPEQVIGKRDEDMPWRAFAEALGRQDTDVMLSGVPKMNYETDL---------VIDG 436 Query: 120 SFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQ 173 T+ + G + + + + + A+ AL Q Sbjct: 437 VHRTTVTSKL------------PFTDSDGRVIGVLGSYTDITERKRADLALRLQ 478 >UniRef50_A6SVJ0 Uncharacterized conserved protein n=4 Tax=Proteobacteria RepID=A6SVJ0_JANMA Length = 956 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 71/334 (21%), Positives = 134/334 (40%), Gaps = 26/334 (7%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 + +A + E ++ +E + + L+++ A Y PE Sbjct: 376 LIADIAARKHAEHELQLRERAIEASANAIIIARAVA-PDYPLEYVNPAFTRITGYSPEEA 434 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 L + ++ GI S + +G L Sbjct: 435 LGRNIGFLWGKDWEQP--------------------GIEELRSIALEKREGH--AVLRNY 472 Query: 129 SSEKR-QWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + WS+ ++ G ++ ++ + + + L Q+ D+LTGL NR Sbjct: 473 RKDGALFWSDLYIAPVKDDTGEVSHFVVALYDITATKRYESELEFQTNRDALTGLANRSL 532 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + + L+ S A NH I IAF+DLD FK +ND GH +GDL L + ERL ++ + Sbjct: 533 LRDRLSQAISYAHRYNHPIWIAFVDLDRFKFVNDTLGHQAGDLLLKAIAERLQHAVRDTD 592 Query: 248 VIGRLGGDEFLVVSLNNENADISS-LRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPE 306 + R+GGDEF+++ +A +S+ + +RI I + + + S+G+ + Sbjct: 593 TVSRMGGDEFVLILPERVDAGLSTGIVQRIMDGIAQPLTIEGHEFFISS-SIGVAVYPND 651 Query: 307 TTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + + ADIAMY+ K+ + +++ Sbjct: 652 GVTPEELIKHADIAMYRAKETGRNNFQFYTSSMN 685 >UniRef50_C0N1M8 Putative uncharacterized protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N1M8_9GAMM Length = 1147 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 129/315 (40%), Gaps = 25/315 (7%) Query: 24 RQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDE 83 ++ L + V D + D R+ + A Y + + S+ + Sbjct: 679 QETLRLHASVFDNAWEGIMITDDHNRIITVNHAFTEITGYDQYEM-IGENPSILSSGRQD 737 Query: 84 NCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERA-EQV 142 F+ W +G + G + ++E Sbjct: 738 KHFY----QLMWQTIR-----------------QNGRWRGEVWNRKKSGEFYAEIHTVSA 776 Query: 143 LQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHL 202 ++ G + Y+ A + ++ L ++ D+LT L NR + + L R Sbjct: 777 IRNEQGDVTHYLGLFADITDIKNTERQLEDLAHYDALTQLANRTLLSDRLGQSLVHTRGN 836 Query: 203 NHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSL 262 + + F+DLD FK +ND +GH GD LI+V RL ++G+ + R+GGDEF+++ Sbjct: 837 QTMLAVCFLDLDGFKPVNDMYGHEIGDQLLIEVARRLEHTVRSGDTVARMGGDEFVLLIA 896 Query: 263 NN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAM 321 N E ++ + R+ Q+I + HLG+ + AS+G+ + DAD+ L AD++M Sbjct: 897 NIREVDELDPILSRMNQKIAEKIHLGER-VISVTASIGVALYPSDNVDADTLLRHADLSM 955 Query: 322 YQEKKHKQKTPFVAH 336 Y+ K+ + + Sbjct: 956 YEAKQAGRNGYHIFD 970 Score = 42.0 bits (98), Expect = 0.030, Method: Composition-based stats. Identities = 18/169 (10%), Positives = 42/169 (24%), Gaps = 20/169 (11%) Query: 5 IIARVSQSLAKE-QSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 + AR +A+ + + E + + +++ + Y Sbjct: 410 LAAREFDVMAERVSDARMALAESEERWSFALEGAGDGVWDWNIQTDEVFLSPQWKKMLGY 469 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFL-STPIHLPDGSFY 122 ++ + ++ C + D+ I + + DGS+ Sbjct: 470 QVDD--IDNQFASC-----VSLLHPDDKSAVMEHLEDYLAGRINLYAPEFRMRCKDGSWK 522 Query: 123 GTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 L RA V + I + L+ L Sbjct: 523 WLL-----------SRAAIVQTDPEDKPLRMIGTHTDISHLKTIQDKLQ 560 >UniRef50_Q1JVN0 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JVN0_DESAC Length = 635 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 70/331 (21%), Positives = 129/331 (38%), Gaps = 31/331 (9%) Query: 16 EQSLESLVRQLLEMLEM---VTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSW 72 + L + + +++ E + + S + V ++ + ++ Sbjct: 66 SRRLRQALVKQVKLQEHYLDLFENASDLIQSVRLDGSILYVN------------------ 107 Query: 73 DYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG--TLCAASS 130 RA E + D + + I L DG+ G + Sbjct: 108 ------RAWKETLGYLDHDIPSLNIFDVISSADRPICRNRVISLLDGAELGPIEVTFQCK 161 Query: 131 EKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFE 190 + R L+ G + + ++A + +Y D+LTGLPNR + + Sbjct: 162 DGRAVLLEGNISLRQDEGQPHSVRGIFRNISERKQAEQKIHQLAYYDTLTGLPNRVLLQD 221 Query: 191 NLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIG 250 L + AR +H + + FIDLD FK +ND GH+ GDL L RL + ++ + Sbjct: 222 RLIHAIADARRFSHYLAVMFIDLDQFKKVNDTLGHSVGDLLLKDAARRLRSCLRDNDTAA 281 Query: 251 RLGGDEFLVVSLN-NENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTD 309 RLGGDEF+V+ + +++ + ++ + Y L + +L ASLGI + + Sbjct: 282 RLGGDEFVVILSGFKQISNLPHIARKVLDVLSQPYFLAEREL-VVSASLGISVYPQDGDN 340 Query: 310 ADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 A+ + AD+AMY K ++ Sbjct: 341 AELLMRNADMAMYAAKYDHGNGYCFFSEEMN 371 >UniRef50_A1ATR3 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=3 Tax=Proteobacteria RepID=A1ATR3_PELPD Length = 754 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 65/345 (18%), Positives = 124/345 (35%), Gaps = 14/345 (4%) Query: 3 DQIIARVSQSLAKEQSLES------LVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFA 56 + I +V L + ++ ++ + + + +D I Sbjct: 126 EVIQHKVRNILYRRHLERDHVLITSRLQHSEQLHRFLVESSPDLIFTLDNSGCFTFINSR 185 Query: 57 RNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHL 116 S + E S ++ + R + + S + Sbjct: 186 IESLLGFSREELIGSCYDTIVLAEDLKTAQHPFTERRRGNRATTNLEIRLKCTPSHYRNF 245 Query: 117 PDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYT 176 + + S + E A + + + A + Q++ Sbjct: 246 ENHH----IVVMMSSTGIYGEHDNDF--PLARCFSGTYGVARDITDRKIAEETIAFQAFH 299 Query: 177 DSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVG 236 D LT LPN+R + L + ++ + + FIDLD FK++ND GH +GD L V Sbjct: 300 DHLTHLPNQRLFKDRLEMAITHSKRHGGMVGVMFIDLDRFKIVNDTHGHAAGDELLKNVA 359 Query: 237 ERLNTLQQNGEVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPG 295 RL + + + R GGDEF V+ + D + + E+I ++ + + ++ Sbjct: 360 HRLRHCIRAVDTLARKGGDEFTVLLPDLMRAEDAALIAEKIMHELGIPFSVAGQK-FHVS 418 Query: 296 ASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 AS+GI V + D+ L +ADIAMY+ K + P ++ Sbjct: 419 ASIGIAIVPRDGESIDTLLKSADIAMYRVKASGKNGYRFFTPDMN 463 >UniRef50_Q47Z22 Sensory box/GGDEF/GAF/EAL domain protein n=5 Tax=Gammaproteobacteria RepID=Q47Z22_COLP3 Length = 1206 Score = 334 bits (857), Expect = 3e-90, Method: Composition-based stats. Identities = 59/333 (17%), Positives = 120/333 (36%), Gaps = 29/333 (8%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 ++ + + E ++ + V + D +A + I A + + Sbjct: 628 MSGTHSDITNRKLAEEKIK----LAASVFSHAGEGIIITDDKATIIDINDAFTNITGFSR 683 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 E + + + + F++D + G + G + Sbjct: 684 EE-AIGKNPRILQSGRQTPEFYADMWQALQNE---------------------GYWSGEV 721 Query: 126 CAASSEKRQWS-ERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 ++ + ++ G+ Y+ + ++E L ++ D LT LPN Sbjct: 722 WNRRKNGEVYAVMQTISAVRDVHGIATHYVSLGNDITLMKEHQNQLEHIAHFDILTNLPN 781 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R + + L+ + + F+DLD FK +ND GH+ GD LI + R+ + Sbjct: 782 RVLLADRLSQAMLQCSRHKQSLAVVFLDLDGFKHVNDTHGHDIGDELLIALSVRMKEALR 841 Query: 245 NGEVIGRLGGDEFLVVSLNNEN-ADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 + + R+GGDEF+ V + D + ER+ ++ + AS+G+ Sbjct: 842 ENDSLARIGGDEFVAVLADLTTVEDCEPVLERLLLAASEPVIFDNI-VLNISASIGVTLY 900 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAH 336 + AD + AD AMY K+ + + Sbjct: 901 PQDNVGADLLMRHADQAMYVAKESGKNRYHLFD 933 Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 55/177 (31%), Gaps = 6/177 (3%) Query: 1 MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQ 60 + ++ + V + L L ++ ++ +E + +D E + A + Sbjct: 347 LREKSRSHVLELLTSGDLLPVILEAIVRGVEQENSDMLCSILLLDDEGKHLLSGAAPSLP 406 Query: 61 KMYIP--ENFTVSWDYSLCKRAIDEN--CFFSDEV-PDRWGDCI-AARNLGITTFLSTPI 114 Y + C A N D W A G+ S PI Sbjct: 407 DFYNSAINGIEIGVGVGSCGTAAFTNKRVIVEDIQNHPYWTPYKELASKAGLGACWSEPI 466 Query: 115 HLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 G GT E + +E +++ A L + I+K L+ ++ + Sbjct: 467 RSTQGKILGTFAIYHLEVNKPTEANMTLIEQAASLASIAIEKIQANLALKASDEQMQ 523 >UniRef50_A1S1U8 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Shewanella amazonensis SB2B RepID=A1S1U8_SHEAM Length = 1069 Score = 333 bits (856), Expect = 4e-90, Method: Composition-based stats. Identities = 75/337 (22%), Positives = 132/337 (39%), Gaps = 25/337 (7%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 IA +++++ K RQ L V + + + D + ++ I A + Y Sbjct: 483 IAAMAEAMNKMLKERKKYRQALVRAAAVFEYSAEGIMVTDADNHIELINPAFSQITGYSI 542 Query: 66 ENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTL 125 E L + + + ST G + G + Sbjct: 543 EEVKGRNPSILSSH----------------RNPPHLYDAMWESLRST------GKWEGEI 580 Query: 126 CAASSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPN 184 + + E A +++ G I +I + + ++ + ++ D+LT LPN Sbjct: 581 WNRRKDGEVYPEYLAITLVRDDEGQIVHHIGLFMDISRRKQYEQDIWYKANFDTLTDLPN 640 Query: 185 RRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQ 244 R+ + E L +A H K+ + +DLD FK IND GH+ GDL L V +RL T+ Sbjct: 641 RKLLSERLGHELKMAEHDGRKLAVMVLDLDRFKYINDTQGHDCGDLLLKAVAKRLQTVMG 700 Query: 245 NGEVIGRLGGDEFLVVSLNNENADI-SSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEV 303 + + I RLGGDEF++V +R+ Q + + + + ASLGI Sbjct: 701 STDFIARLGGDEFVIVLPRLAQEHAVEQYAKRLLQSMGDPFKVEQGSMSV-SASLGIGLY 759 Query: 304 DPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + D ++ L A+ AMY K + ++ Sbjct: 760 PQDGLDVETLLSNAETAMYGAKDEGRNHFKYFTQEMN 796 >UniRef50_Q0EYI6 Sensory box-containing diguanylate cyclase, putative n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EYI6_9PROT Length = 800 Score = 333 bits (856), Expect = 4e-90, Method: Composition-based stats. Identities = 67/302 (22%), Positives = 128/302 (42%), Gaps = 12/302 (3%) Query: 36 MESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRW 95 + + V R ++ RN + + + LC +A D Sbjct: 505 LSQGSIFLVVKGERKLEMVAQRNLPDSLLQSCGMLPFGRCLCGKAAATRQLIYVNHLDEQ 564 Query: 96 GDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQ 155 + + + PI +G +G L + E ++ L+ A +A I Sbjct: 565 HEIVYDGIQPHGHY-CIPI-ETEGELFGVLNIYVDVEHVSDESEKKFLKTVADTLAVVI- 621 Query: 156 KEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDN 215 + +++ L ++ D LTGLPNR ++ L +LA+ + F+DLD+ Sbjct: 622 ------ERKQSEERLQQLAHNDMLTGLPNRTLFYDRLNQALALAQRHKQAFAVMFLDLDH 675 Query: 216 FKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADI-SSLRE 274 FK IND GH+ GDL L + RL + ++ + + R+GGDEF ++ + + E Sbjct: 676 FKEINDTLGHDMGDLLLREAATRLRSCVRSMDTVARMGGDEFTIILTETAVREAVEKVAE 735 Query: 275 RIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFV 334 ++ ++++ + L ++ + G S+GI D+++ + ADIAMY K+ + + Sbjct: 736 KLLRELQQPFSLNG-EIRHVGCSIGIALYPKHGLDSETLIKHADIAMYDAKRE-RNSYCF 793 Query: 335 AH 336 Sbjct: 794 FS 795 Score = 59.7 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 43/157 (27%), Gaps = 24/157 (15%) Query: 18 SLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDYSLC 77 E + + E E +++ + +D + + A + Y E ++L Sbjct: 328 RTERALSESEERFEKISESAQDAIICMDNDGNISFWNQAAETTFGYAQEEVMGKNLHTL- 386 Query: 78 KRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG---TLCAASSEKRQ 134 VP+R+ D + GS G L A + + Sbjct: 387 ------------IVPERFRDAHLKAFPLFQS-------TGQGSALGKTLELAAIRKDGTE 427 Query: 135 WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 + AG + + ++A + Sbjct: 428 FPIEIALSSTRIAGK-WNAVAVLRDITIRKQAQQEIE 463 >UniRef50_B3PKS7 Diguanylate cyclase/phosphodiesterase domain 2 (EAL) n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PKS7_CELJU Length = 940 Score = 333 bits (856), Expect = 4e-90, Method: Composition-based stats. Identities = 64/332 (19%), Positives = 128/332 (38%), Gaps = 29/332 (8%) Query: 7 ARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPE 66 AR++ + E+ ++ + V + D + + + Y + Sbjct: 356 ARLAALAIETTRAENRLQ----LTACVFSHAREGILITDAQGNIIEVNTTFTDITGYTRD 411 Query: 67 NFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLC 126 + + + L + + FF W + +G++ G + Sbjct: 412 DV-IGKNPRLLQSNKHDAVFFER----LWHS-----------------LVNEGAWCGEIW 449 Query: 127 AASSEKRQW-SERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNR 185 + + ++ G I ++ + ++E L ++ D+LT LPNR Sbjct: 450 NKRKNGDLYVASMTISAVKDSRGQITHFVDLFNDITHIKEHQRQLEHIAHYDALTHLPNR 509 Query: 186 RAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQN 245 + + + ++ + + +IDLD FK IND++GH+ GD L+ + R ++ + Sbjct: 510 VLLADRMKQALLHSQRSGLSLAVMYIDLDGFKAINDQYGHDLGDQLLVAISSRFKSVLRE 569 Query: 246 GEVIGRLGGDEFLVVSLNNENADI-SSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVD 304 + + R+GGDEF+VV E + +R+ L D L AS+GI Sbjct: 570 SDTLARIGGDEFVVVLNELEQPAAYQPVLDRLLATAADPLILRDQALRI-TASIGITLYP 628 Query: 305 PETTDADSALHAADIAMYQEKKHKQKTPFVAH 336 +T DA+ + AD AMY K+ + + Sbjct: 629 SDTADAEQLIRHADQAMYLAKQRGKNGWHLFD 660 Score = 98.6 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 49/172 (28%), Gaps = 13/172 (7%) Query: 6 IARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIP 65 + + + L + L+ ++ + +E + +D E + A + YI Sbjct: 209 HSHILELLLQHAPLQQVLEAIALDVERTNPHMLCTILLLDSEGKHLIHGAAPSLPVFYIQ 268 Query: 66 --ENFTVSWDYSLCKRAIDENCFFSDE---VPDRWGDCI-AARNLGITTFLSTPIHLPDG 119 + C A E W D A G+ + S PI G Sbjct: 269 AINGGAIGPRAGSCGTAAFTGKRVVVEDINTHPFWADYKQLALRAGLQSCWSQPILSATG 328 Query: 120 SFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALI 171 GT + Q Q++ A L A I+ A L Sbjct: 329 KVLGTFAIYHNHPSQPEPHDLQLIDNEARLAALAIETTR-------AENRLQ 373 Score = 43.9 bits (103), Expect = 0.008, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 51/171 (29%), Gaps = 22/171 (12%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 Q ++ ++A+++ E +R +LE + + +++ +R + Sbjct: 59 QAQTQLQTTIAQQRVAEEQLRTSARLLEASQAIANVGSVEMEFPSRRLYWSAETYRIHDT 118 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 PE +T ++D SL + + D A G L Sbjct: 119 SPEEYTPTFDLSL-------DHYLPDSRQKLQAALQKALETGEVFDL------------- 158 Query: 124 TLCAASSEKRQWS-ERAEQVLQLFAGLIAQYIQKEALVEQLREANA-ALIA 172 L + + R+ G + + + ++A L Sbjct: 159 ELEKYTFKGRKIDVRTTCTATFDQLGRLIRLTGIFQDISARKQAERYQLHH 209 >UniRef50_C6XAD3 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XAD3_METSD Length = 751 Score = 333 bits (856), Expect = 5e-90, Method: Composition-based stats. Identities = 65/343 (18%), Positives = 120/343 (34%), Gaps = 26/343 (7%) Query: 3 DQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKM 62 ++I + + + E + + + + D ++R+ ++ Sbjct: 167 EEINRLLKLEIDLRREAEQTLYAEKQRAVVTLQSIGDGVITTDKQSRVNYLNPVAERMTG 226 Query: 63 YIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFY 122 + + + + + D + L G Y Sbjct: 227 WSNAEAQGKPLLEVFRIVNESSRKLVPNPVD--------------------VVLQHGEIY 266 Query: 123 G----TLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDS 178 G T E + ++ G + + V + R + + D Sbjct: 267 GLANHTALIGRHGNEYAIEDSAAPIRDQDGNVLGVVLVFHDVSEARNMANKMTYLAEHDY 326 Query: 179 LTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGER 238 LTGLPNR + + L ++AR I + F+DLD+FK IND GH GD L V R Sbjct: 327 LTGLPNRLLLNDRLNQALTIARRDQEFIALMFLDLDHFKNINDSLGHEVGDQLLKMVARR 386 Query: 239 LNTLQQNGEVIGRLGGDEFLVVSLNNENA-DISSLRERIQQQIRGEYHLGDVDLYYPGAS 297 L + + + I R GGDEF+++ N + + E++ Y +G ++ AS Sbjct: 387 LESCLRASDTISRQGGDEFMILLPELTNYFSPAEVAEKLLAAATVPYEIGSHEI-TVSAS 445 Query: 298 LGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 +GI + + + AD AMY K + A++ Sbjct: 446 IGIAVFPDDGENGELLTKNADAAMYHAKSLGRNNYQFFTRAMN 488 >UniRef50_A1TX84 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Marinobacter aquaeolei VT8 RepID=A1TX84_MARAV Length = 890 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 68/327 (20%), Positives = 127/327 (38%), Gaps = 23/327 (7%) Query: 15 KEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENFTVSWDY 74 + +S ++ +E ++ L + + + A + Y + Sbjct: 326 QLESRARKLQLYDRAIEESSNGIVICLADKTRDNPVIYANRAFSIMTGYSHDEIIGLSP- 384 Query: 75 SLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAASSEKRQ 134 +D G + + DGS + Sbjct: 385 --------RFLLANDLAQPGLERLRNCMRHGGSARAILRNYRKDGSLF------------ 424 Query: 135 WSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAIFENLTT 194 W+E A + G IA +I V + AAL Q+ D LTGLPNR + + L Sbjct: 425 WNEVALAAVHNEHGEIAHFISVFNDVTDRKRYEAALEYQANHDDLTGLPNRNLLRDRLEH 484 Query: 195 LFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGG 254 + A + K+ + +DLD FK +ND GH GD + +V R++ ++ + + RLGG Sbjct: 485 AITKATREHTKLAVLLLDLDQFKRVNDGLGHKIGDTLIQRVASRMSQCVRDSDTVARLGG 544 Query: 255 DEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSA 313 DEF+++S + + ++L +++ +Q R + + ++ AS+GI + + D Sbjct: 545 DEFMILSTDIRDERAAATLAQKLLRQFRQKVAINGHEI-IASASIGIAMFPKDGDNGDEL 603 Query: 314 LHAADIAMYQEKKHKQKTPFVAHPALH 340 AD AMY+ K + ++ Sbjct: 604 FRNADTAMYRAKDVGRNGFQFYSAEMN 630 >UniRef50_B6BGA2 Diguanylate cyclase/phosphodiesterase n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BGA2_9PROT Length = 802 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 74/335 (22%), Positives = 126/335 (37%), Gaps = 29/335 (8%) Query: 8 RVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPEN 67 + K++ ++ + E V S + D + I + Y E Sbjct: 237 GTVHDITKQKIAQNELMLASE----VFSKMSDGVVITDANQSIIKINESFTKITGYTNEE 292 Query: 68 FTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCA 127 + DE + W D +G + G + Sbjct: 293 LIGMTPKAFSSGWHDEAFY-----KKMWDDIK-----------------QNGQWSGEIID 330 Query: 128 ASSEKRQW-SERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRR 186 ++ +E L G++ YI + + +E + +Y DSLT LPNR Sbjct: 331 RKKSSERYIAEMNIIALHNDDGILTNYISITNDISKKKEQEKLIHNLAYFDSLTDLPNRV 390 Query: 187 AIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNG 246 E + + ++ + K+ + FID+DNFK +ND GH GD+FLI+V + + Sbjct: 391 LFEERVVSRIPFSKRHDKKMALLFIDMDNFKNVNDTLGHFMGDMFLIEVSNIIKNSIREQ 450 Query: 247 EVIGRLGGDEFLVVSLNN-ENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDP 305 + + RLGGDEF V+ + DI + E+I + +LY G S+GI Sbjct: 451 DTLARLGGDEFTVLLEDINSIMDIVPIAEKIIAAFNNPVLIESKELY-TGISMGISLYPD 509 Query: 306 ETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + + AAD AMYQ K + +++ Sbjct: 510 DGKSYNELFKAADTAMYQVKASGKNNFQFFKQSMN 544 >UniRef50_Q47C60 Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Rhodocyclaceae RepID=Q47C60_DECAR Length = 714 Score = 333 bits (855), Expect = 5e-90, Method: Composition-based stats. Identities = 76/338 (22%), Positives = 125/338 (36%), Gaps = 21/338 (6%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMY 63 Q++ + + + + + + + + + R A Y Sbjct: 137 QVLEGYLEDITDRVQAQIQLTETELRYRSIFENSVVGMFQSTESGRYLAANPALARLYGY 196 Query: 64 IPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYG 123 +S I + + + + + G T + I DGS Sbjct: 197 STPEALISSLAD-----IASGLYVDPQRREDFKQ--LIQRDGRVTNFESEITCRDGS--- 246 Query: 124 TLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLP 183 R W ++ G Y + + + L Q+ D LTGLP Sbjct: 247 ---------RIWIAEHAHAVRSADGSFLYYEGTVEDITERHRYQSVLQHQATHDPLTGLP 297 Query: 184 NRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQ 243 NR + + L LAR + K+ +AF+DLDNFK+IND GH +GD LI++ RL Sbjct: 298 NRNLLEDRLAQAVQLARRKSSKVALAFVDLDNFKVINDSLGHAAGDQLLIEISSRLRAAL 357 Query: 244 QNGEVIGRLGGDEFLVVS-LNNENADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVE 302 + + + R GGDEF+++ AD L ER+ I+ L L S+G+ Sbjct: 358 RGLDTVARYGGDEFVLILGEQTSMADTMHLLERVLVSIQAPLALEGHGLRIN-CSIGVSV 416 Query: 303 VDPETTDADSALHAADIAMYQEKKHKQKTPFVAHPALH 340 + D D L AD+AMY K+ + L+ Sbjct: 417 FPDDAQDLDGLLRVADVAMYHAKESGKGQYCFYTRDLN 454 >UniRef50_Q2BHU8 PAS:GGDEF protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BHU8_9GAMM Length = 892 Score = 333 bits (855), Expect = 6e-90, Method: Composition-based stats. Identities = 77/336 (22%), Positives = 133/336 (39%), Gaps = 36/336 (10%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 +S+ + + + E + + D E R+ + A Y E Sbjct: 317 LSRDITERKRHERELHIAATAF-----DSQEGMLITDAEHRILRVNNAFTRVTGYEAEE- 370 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + + + F+ + + + G + Sbjct: 371 AIGNTPAFLQSGKHSEDFYQTMMES---------------------LSKNNYWQGEVWNQ 409 Query: 129 SSEKRQWSE-RAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRA 187 + + +Q AG I Y+ + Q ++ A + ++ DSLTGLPNRR+ Sbjct: 410 RKSGEIYPQHLTITAVQTSAGEITNYVGAFTDITQRKQDEADIHQLAFYDSLTGLPNRRS 469 Query: 188 IFENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGE 247 + E L + S RH + FIDLDNFK +ND GH+ GD L++V RLN+ +N + Sbjct: 470 LQERLDSALSSCRHTRQLGAVFFIDLDNFKNLNDTAGHDQGDKLLVEVANRLNSCVRNAD 529 Query: 248 VIGRLGGDEFLVVSLNNENADISSLRE------RIQQQIRGEYHLGDVDLYYPGASLGIV 301 ++ RLGGDEF+V+ N + + L + ++ I+ + Y+P S+GI Sbjct: 530 MVARLGGDEFIVILENLGVDESNVLAQVKDIVAKVILTIQAPLTI-GTQAYHPTCSIGIA 588 Query: 302 EVDPETTDADSALHAADIAMYQEKKHKQKTPFVAHP 337 + D + +D+AMYQ K + T P Sbjct: 589 LFSEKDFS-DEVMKRSDMAMYQAKSSGKNTYRFFDP 623 Score = 51.2 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 49/183 (26%), Gaps = 30/183 (16%) Query: 4 QIIARVSQSLAKEQSLESLVRQLLE-------MLEMVTDMESTYLTKVDVEARLQHIMFA 56 ++ + + E+ +R+ LE L ++D+E R + Sbjct: 180 VLLGGLLSQQISRKKAEAALRESERTSNHARHRLEATFSAIPDLLFEMDIEGRYLACHAS 239 Query: 57 RNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHL 116 P++ + + K D DE A GI+ + + Sbjct: 240 D-------PDDLVAKPEELIGKSVFD--FIPLDEAQIIVEAIREADLKGISKGRQVTLQV 290 Query: 117 PDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSY- 175 G L + + SE +I + + + L + Sbjct: 291 GRGLREFELSVSRKHDDESSEH-------------HFIVLSRDITERKRHERELHIAATA 337 Query: 176 TDS 178 DS Sbjct: 338 FDS 340 >UniRef50_Q2BQ15 Diguanylate cyclase/phosphodiesterase domain 2 (EAL) n=1 Tax=Neptuniibacter caesariensis RepID=Q2BQ15_9GAMM Length = 594 Score = 333 bits (855), Expect = 6e-90, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 119/332 (35%), Gaps = 20/332 (6%) Query: 9 VSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKVDVEARLQHIMFARNSQKMYIPENF 68 + Q + E ++R+ + + L D ++ ++ + F Sbjct: 15 LKQRVIGLSKAEKVLRETEARYALAMQGANEGLWDWDPVSKELYLSARLLRTIGMGKDTF 74 Query: 69 TVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAARNLGITTFLSTPIHLPDGSFYGTLCAA 128 + + D + C + + G Sbjct: 75 KTTSNE------WLSWVHEEDREHYQQVLCHHLKGETEYFRCEYRVQNSSG--------- 119 Query: 129 SSEKRQWSERAEQVLQLFAGLIAQYIQKEALVEQLREANAALIAQSYTDSLTGLPNRRAI 188 W L+ + + + + + +E L+ Q+ D LTGLPNR Sbjct: 120 ---GYVWVLAHGMALRNDQNIAYRMVGSIGDITEQKEYQDKLLHQATYDHLTGLPNRALA 176 Query: 189 FENLTTLFSLARHLNHKIMIAFIDLDNFKLINDRFGHNSGDLFLIQVGERLNTLQQNGEV 248 + L+ S +R + + F+DLDNFK IND GH GDL L ++ RL + + Sbjct: 177 LDRLSVAISRSRRNKTSVGLLFVDLDNFKKINDTLGHEVGDLHLKEISNRLGYCFREEDT 236 Query: 249 IGRLGGDEFLVVSLNNE-NADISSLRERIQQQIRGEYHLGDVDLYYPGASLGIVEVDPET 307 I RLGGDEFLV+ + + + + ERI + + + AS+G+ + Sbjct: 237 IARLGGDEFLVILPDLDSPKQVEEVCERILATAMQPVTINGYE-FSTSASIGVTIYPDDG 295 Query: 308 TDADSALHAADIAMYQEKKHKQKTPFVAHPAL 339 + L AD AMYQ K + T P + Sbjct: 296 YEPSGLLRNADAAMYQAKAQGKDTFCFFTPEM 327 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.174 0.624 Lambda K H 0.267 0.0533 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,404,696,545 Number of Sequences: 3077464 Number of extensions: 148171368 Number of successful extensions: 438587 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 24754 Number of HSP's successfully gapped in prelim test: 6063 Number of HSP's that attempted gapping in prelim test: 357771 Number of HSP's gapped (non-prelim): 43658 length of query: 341 length of database: 1,040,396,356 effective HSP length: 129 effective length of query: 212 effective length of database: 643,403,500 effective search space: 136401542000 effective search space used: 136401542000 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 94 (40.4 bits)