Phyre 2 Results for P14900

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Email | l.a.kelley@imperial.ac.uk
Description | P14900
Date | Thu Jan 5 11:34:07 GMT 2012
Unique Job ID | 14fc734943229492

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3uagA_
Top template information
PDB header:ligase Chain: A: PDB Molecule:protein (udp-n-acetylmuramoyl-l-alanine:d- PDBTitle: udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase
Confidence and coverage
Confidence: | 100.0% | Coverage: | 98%
429 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | A | D | Y | Q | G | K | N | V | V | I | I | G | L | G | L | T | G | L | S | C | V | D | F | F | L | A | R | G | V | T | P | R | V | M | D | T | R | M | T | P | P | G | L | D | K | L | P | E | A | V | E | R | H | T | G | S | L | N | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | E | W | L | M | A | A | D | L | I | V | A | S | P | G | I | A | L | A | H | P | S | L | S | A | A | A | D | A | G | I | E | I | V | G | D | I | E | L | F | C | R | E | A | Q | A | P | I | V | A | I | T | G | S | N | G | K | S | T | V | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | T | L | V | G | E | M | A | K | A | A | G | V | N | V | G | V | G | G | N | I | G | L | P | A | L | M | L | L | D | D | E | C | E | L | Y | V | L | E | L | S | S | F | Q | L | E | T | T | S | S | L | Q | A | V | A | A | T | I | L | N | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | T | E | D | H | M | D | R | Y | P | F | G | L | Q | Q | Y | R | A | A | K | L | R | I | Y | E | N | A | K | V | C | V | V | N | A | D | D | A | L | T | M | P | I | R | G | A | D | E | R | C | V | S | F | G | V | N | M | G | D | Y | H | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | N | H | Q | Q | G | E | T | W | L | R | V | K | G | E | K | V | L | N | V | K | E | M | K | L | S | G | Q | H | N | Y | T | N | A | L | A | A | L | A | L | A | D | A | A | G | L | P | R | A | S | S | L | K | A | L | T | T | F | T | G | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | P | H | R | F | E | V | V | L | E | H | N | G | V | R | W | I | N | D | S | K | A | T | N | V | G | S | T | E | A | A | L | N | G | L | H | V | D | G | T | L | H | L | L | L | G | G | D | G | K | S | A | D | F | S | P | L | A | R | Y | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | N | G | D | N | V | R | L | Y | C | F | G | R | D | G | A | Q | L | A | A | L | R | P | E | V | A | E | Q | T | E | T | M | E | Q | A | M | R | L | L | A | P | R | V | Q | P | G | D | M | V | L | L | S | P | A | C | A | S | L | D | Q | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | .
Sequence |  | K | N | F | E | Q | R | G | N | E | F | A | R | L | A | K | E | L | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3uagA_ |

### PDB 3uag chain A

Region: 2 - 438
Aligned: 429
Modelled: 437
Confidence: 100.0%
Identity: 98%
PDB header:ligase
Chain: A: PDB Molecule:protein (udp-n-acetylmuramoyl-l-alanine:d-
PDBTitle: udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase

Phyre2
2 |
| c3lk7A_ |

### PDB 3lk7 chain A

Region: 1 - 437
Aligned: 432
Modelled: 437
Confidence: 100.0%
Identity: 29%
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine--d-glutamate ligase;
PDBTitle: the crystal structure of udp-n-acetylmuramoylalanine-d-2 glutamate (murd) ligase from streptococcus agalactiae to3 1.5a

Phyre2
3 |
| c2f00A_ |

### PDB 2f00 chain A

Region: 1 - 420
Aligned: 417
Modelled: 420
Confidence: 100.0%
Identity: 18%
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase;
PDBTitle: escherichia coli murc

Phyre2
4 |
| c3hn7A_ |

### PDB 3hn7 chain A

Region: 6 - 437
Aligned: 420
Modelled: 427
Confidence: 100.0%
Identity: 18%
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase;
PDBTitle: crystal structure of a murein peptide ligase mpl (psyc_0032) from2 psychrobacter arcticus 273-4 at 1.65 a resolution

Phyre2
5 |
| c1j6uA_ |

### PDB 1j6u chain A

Region: 6 - 426
Aligned: 407
Modelled: 421
Confidence: 100.0%
Identity: 22%
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate-alanine ligase murc;
PDBTitle: crystal structure of udp-n-acetylmuramate-alanine ligase2 murc (tm0231) from thermotoga maritima at 2.3 a resolution

Phyre2
6 |
| c1gqqA_ |

### PDB 1gqq chain A

Region: 7 - 426
Aligned: 393
Modelled: 401
Confidence: 100.0%
Identity: 19%
PDB header:cell wall biosynthesis
Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase;
PDBTitle: murc - crystal structure of the apo-enzyme from haemophilus2 influenzae

Phyre2
7 |
| c3eagA_ |

### PDB 3eag chain A

Region: 5 - 302
Aligned: 297
Modelled: 298
Confidence: 100.0%
Identity: 20%
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-
PDBTitle: the crystal structure of udp-n-acetylmuramate:l-alanyl-gamma-d-2 glutamyl-meso-diaminopimelate ligase (mpl) from neisseria3 meningitides

Phyre2
8 |
| c2am1A_ |

### PDB 2am1 chain A

Region: 98 - 437
Aligned: 327
Modelled: 337
Confidence: 100.0%
Identity: 22%
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine-d-glutamyl-lysine-d-alanyl-d-
PDBTitle: sp protein ligand 1

Phyre2
9 |
| c1e8cB_ |

### PDB 1e8c chain B

Region: 64 - 437
Aligned: 370
Modelled: 372
Confidence: 100.0%
Identity: 22%
PDB header:ligase
Chain: B: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamate--2,6-
PDBTitle: structure of mure the udp-n-acetylmuramyl tripeptide2 synthetase from e. coli

Phyre2
10 |
| c1gg4A_ |

### PDB 1gg4 chain A

Region: 18 - 437
Aligned: 396
Modelled: 419
Confidence: 100.0%
Identity: 21%
PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamyl-2,6-
PDBTitle: crystal structure of escherichia coli udpmurnac-tripeptide2 d-alanyl-d-alanine-adding enzyme (murf) at 2.3 angstrom3 resolution

Phyre2
11 |
| c2wtzC_ |

### PDB 2wtz chain C

Region: 101 - 411
Aligned: 287
Modelled: 311
Confidence: 100.0%
Identity: 24%
PDB header:ligase
Chain: C: PDB Molecule:udp-n-acetylmuramoyl-l-alanyl-d-glutamate-
PDBTitle: mure ligase of mycobacterium tuberculosis

Phyre2
12 |
| c2vosA_ |

### PDB 2vos chain A

Region: 74 - 419
Aligned: 330
Modelled: 345
Confidence: 100.0%
Identity: 22%
PDB header:ligase
Chain: A: PDB Molecule:folylpolyglutamate synthase protein folc;
PDBTitle: mycobacterium tuberculosis folylpolyglutamate synthase2 complexed with adp

Phyre2
13 |
| c1w78A_ |

### PDB 1w78 chain A

Region: 72 - 417
Aligned: 326
Modelled: 345
Confidence: 100.0%
Identity: 22%
PDB header:synthase
Chain: A: PDB Molecule:folc bifunctional protein;
PDBTitle: e.coli folc in complex with dhpp and adp

Phyre2
14 |
| c2gc6A_ |

### PDB 2gc6 chain A

Region: 101 - 419
Aligned: 299
Modelled: 318
Confidence: 100.0%
Identity: 16%
PDB header:ligase
Chain: A: PDB Molecule:folylpolyglutamate synthase;
PDBTitle: s73a mutant of l. casei fpgs

Phyre2
15 |
| c3n2aA_ |

### PDB 3n2a chain A

Region: 72 - 438
Aligned: 333
Modelled: 361
Confidence: 100.0%
Identity: 22%
PDB header:ligase
Chain: A: PDB Molecule:bifunctional folylpolyglutamate synthase/dihydrofolate
PDBTitle: crystal structure of bifunctional folylpolyglutamate2 synthase/dihydrofolate synthase from yersinia pestis co92

Phyre2
16 |
| c1o5zA_ |

### PDB 1o5z chain A

Region: 75 - 419
Aligned: 316
Modelled: 335
Confidence: 100.0%
Identity: 22%
PDB header:ligase
Chain: A: PDB Molecule:folylpolyglutamate synthase/dihydrofolate synthase;
PDBTitle: crystal structure of folylpolyglutamate synthase (tm0166) from2 thermotoga maritima at 2.10 a resolution

Phyre2
17 |
| d2jfga3 |

### PDB 2jfg chain A domain 3

Region: 95 - 298
Aligned: 203
Modelled: 204
Confidence: 100.0%
Identity: 97%
Fold: Ribokinase-like
Superfamily: MurD-like peptide ligases, catalytic domain
Family: MurCDEF

Phyre2
18 |
| d2jfga2 |

### PDB 2jfg chain A domain 2

Region: 299 - 438
Aligned: 140
Modelled: 140
Confidence: 100.0%
Identity: 100%
Fold: MurD-like peptide ligases, peptide-binding domain
Superfamily: MurD-like peptide ligases, peptide-binding domain
Family: MurCDEF C-terminal domain

Phyre2
19 |
| d1p3da3 |

### PDB 1p3d chain A domain 3

Region: 95 - 298
Aligned: 203
Modelled: 198
Confidence: 100.0%
Identity: 19%
Fold: Ribokinase-like
Superfamily: MurD-like peptide ligases, catalytic domain
Family: MurCDEF

Phyre2
20 |
| d1e8ca3 |

### PDB 1e8c chain A domain 3

Region: 103 - 299
Aligned: 196
Modelled: 197
Confidence: 100.0%
Identity: 27%
Fold: Ribokinase-like
Superfamily: MurD-like peptide ligases, catalytic domain
Family: MurCDEF

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3uagA_ |
|  | 100.0 | 98 | PDB header:ligase Chain: A: PDB Molecule:protein (udp-n-acetylmuramoyl-l-alanine:d- PDBTitle: udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase
2 | c3lk7A_ |
|  | 100.0 | 29 | PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine--d-glutamate ligase; PDBTitle: the crystal structure of udp-n-acetylmuramoylalanine-d-2 glutamate (murd) ligase from streptococcus agalactiae to3 1.5a
3 | c2f00A_ |
|  | 100.0 | 18 | PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase; PDBTitle: escherichia coli murc
4 | c3hn7A_ |
|  | 100.0 | 18 | PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase; PDBTitle: crystal structure of a murein peptide ligase mpl (psyc_0032) from2 psychrobacter arcticus 273-4 at 1.65 a resolution
5 | c1j6uA_ |
|  | 100.0 | 22 | PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate-alanine ligase murc; PDBTitle: crystal structure of udp-n-acetylmuramate-alanine ligase2 murc (tm0231) from thermotoga maritima at 2.3 a resolution
6 | c1gqqA_ |
|  | 100.0 | 19 | PDB header:cell wall biosynthesis Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase; PDBTitle: murc - crystal structure of the apo-enzyme from haemophilus2 influenzae
7 | c3eagA_ |
|  | 100.0 | 20 | PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso- PDBTitle: the crystal structure of udp-n-acetylmuramate:l-alanyl-gamma-d-2 glutamyl-meso-diaminopimelate ligase (mpl) from neisseria3 meningitides
8 | c2am1A_ |
|  | 100.0 | 22 | PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine-d-glutamyl-lysine-d-alanyl-d- PDBTitle: sp protein ligand 1
9 | c1e8cB_ |
|  | 100.0 | 22 | PDB header:ligase Chain: B: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamate--2,6- PDBTitle: structure of mure the udp-n-acetylmuramyl tripeptide2 synthetase from e. coli
10 | c1gg4A_ |
|  | 100.0 | 21 | PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanyl-d-glutamyl-2,6- PDBTitle: crystal structure of escherichia coli udpmurnac-tripeptide2 d-alanyl-d-alanine-adding enzyme (murf) at 2.3 angstrom3 resolution
11 | c2wtzC_ |
|  | 100.0 | 24 | PDB header:ligase Chain: C: PDB Molecule:udp-n-acetylmuramoyl-l-alanyl-d-glutamate- PDBTitle: mure ligase of mycobacterium tuberculosis
12 | c2vosA_ |
|  | 100.0 | 22 | PDB header:ligase Chain: A: PDB Molecule:folylpolyglutamate synthase protein folc; PDBTitle: mycobacterium tuberculosis folylpolyglutamate synthase2 complexed with adp
13 | c1w78A_ |
|  | 100.0 | 22 | PDB header:synthase Chain: A: PDB Molecule:folc bifunctional protein; PDBTitle: e.coli folc in complex with dhpp and adp
14 | c2gc6A_ |
|  | 100.0 | 16 | PDB header:ligase Chain: A: PDB Molecule:folylpolyglutamate synthase; PDBTitle: s73a mutant of l. casei fpgs
15 | c3n2aA_ |
|  | 100.0 | 22 | PDB header:ligase Chain: A: PDB Molecule:bifunctional folylpolyglutamate synthase/dihydrofolate PDBTitle: crystal structure of bifunctional folylpolyglutamate2 synthase/dihydrofolate synthase from yersinia pestis co92
16 | c1o5zA_ |
|  | 100.0 | 22 | PDB header:ligase Chain: A: PDB Molecule:folylpolyglutamate synthase/dihydrofolate synthase; PDBTitle: crystal structure of folylpolyglutamate synthase (tm0166) from2 thermotoga maritima at 2.10 a resolution
17 | d2jfga3 |
|  | 100.0 | 97 | Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:MurCDEF
18 | d2jfga2 |
|  | 100.0 | 100 | Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain
19 | d1p3da3 |
|  | 100.0 | 19 | Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:MurCDEF
20 | d1e8ca3 |
|  | 100.0 | 27 | Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:MurCDEF
21 | d1j6ua3 |
| not modelled | 100.0 | 32 | Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:MurCDEF
22 | d2gc6a2 |
| not modelled | 100.0 | 15 | Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:Folylpolyglutamate synthetase
23 | d1gg4a4 |
| not modelled | 100.0 | 22 | Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:MurCDEF
24 | d1o5za2 |
| not modelled | 100.0 | 20 | Fold:Ribokinase-like Superfamily:MurD-like peptide ligases, catalytic domain Family:Folylpolyglutamate synthetase
25 | d1gg4a1 |
| not modelled | 99.7 | 18 | Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain
26 | d2jfga1 |
| not modelled | 99.7 | 100 | Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain
27 | d1j6ua1 |
| not modelled | 99.7 | 14 | Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain
28 | d1p3da1 |
| not modelled | 99.7 | 19 | Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain
29 | d1e8ca2 |
| not modelled | 99.6 | 18 | Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain
30 | c3mvnA_ |
| not modelled | 99.5 | 16 | PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamayl-medo- PDBTitle: crystal structure of a domain from a putative udp-n-acetylmuramate:l-2 alanyl-gamma-d-glutamayl-medo-diaminopimelate ligase from haemophilus3 ducreyi 35000hp
31 | d1p3da2 |
| not modelled | 99.5 | 17 | Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain
32 | d1j6ua2 |
| not modelled | 99.1 | 11 | Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain
33 | d1o5za1 |
| not modelled | 98.9 | 25 | Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:Folylpolyglutamate synthetase, C-terminal domain
34 | d2gc6a1 |
| not modelled | 98.7 | 20 | Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:Folylpolyglutamate synthetase, C-terminal domain
35 | d1pjqa1 |
| not modelled | 98.6 | 16 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Siroheme synthase N-terminal domain-like
36 | c3d4oA_ |
| not modelled | 98.2 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:dipicolinate synthase subunit a; PDBTitle: crystal structure of dipicolinate synthase subunit a (np_243269.1)2 from bacillus halodurans at 2.10 a resolution
37 | c3gg2B_ |
| not modelled | 97.9 | 17 | PDB header:oxidoreductase Chain: B: PDB Molecule:sugar dehydrogenase, udp-glucose/gdp-mannose PDBTitle: crystal structure of udp-glucose 6-dehydrogenase from2 porphyromonas gingivalis bound to product udp-glucuronate
38 | c2y0dB_ |
| not modelled | 97.9 | 15 | PDB header:oxidoreductase Chain: B: PDB Molecule:udp-glucose dehydrogenase; PDBTitle: bcec mutation y10k
39 | c3cumA_ |
| not modelled | 97.9 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:probable 3-hydroxyisobutyrate dehydrogenase; PDBTitle: crystal structure of a possible 3-hydroxyisobutyrate dehydrogenase2 from pseudomonas aeruginosa pao1
40 | c1mv8A_ |
| not modelled | 97.8 | 23 | PDB header:oxidoreductase Chain: A: PDB Molecule:gdp-mannose 6-dehydrogenase; PDBTitle: 1.55 a crystal structure of a ternary complex of gdp-mannose2 dehydrogenase from psuedomonas aeruginosa
41 | c2rirA_ |
| not modelled | 97.8 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:dipicolinate synthase, a chain; PDBTitle: crystal structure of dipicolinate synthase, a chain, from bacillus2 subtilis
42 | c1pjtB_ |
| not modelled | 97.8 | 17 | PDB header:transferase/oxidoreductase/lyase Chain: B: PDB Molecule:siroheme synthase; PDBTitle: the structure of the ser128ala point-mutant variant of cysg,2 the multifunctional3 methyltransferase/dehydrogenase/ferrochelatase for4 siroheme synthesis
43 | c1gdhA_ |
| not modelled | 97.8 | 14 | PDB header:oxidoreductase(choh (d)-nad(p)+ (a)) Chain: A: PDB Molecule:d-glycerate dehydrogenase; PDBTitle: crystal structure of a nad-dependent d-glycerate2 dehydrogenase at 2.4 angstroms resolution
44 | d3cuma2 |
| not modelled | 97.8 | 17 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
45 | c3dhyC_ |
| not modelled | 97.8 | 21 | PDB header:hydrolase Chain: C: PDB Molecule:adenosylhomocysteinase; PDBTitle: crystal structures of mycobacterium tuberculosis s-adenosyl-l-2 homocysteine hydrolase in ternary complex with substrate and3 inhibitors
46 | c3dfzB_ |
| not modelled | 97.8 | 16 | PDB header:oxidoreductase Chain: B: PDB Molecule:precorrin-2 dehydrogenase; PDBTitle: sirc, precorrin-2 dehydrogenase
47 | d1nyta1 |
| not modelled | 97.8 | 15 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain
48 | c3gvpB_ |
| not modelled | 97.8 | 19 | PDB header:hydrolase Chain: B: PDB Molecule:adenosylhomocysteinase 3; PDBTitle: human sahh-like domain of human adenosylhomocysteinase 3
49 | c2g5cD_ |
| not modelled | 97.8 | 19 | PDB header:oxidoreductase Chain: D: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of prephenate dehydrogenase from aquifex aeolicus
50 | c1d4fD_ |
| not modelled | 97.7 | 20 | PDB header:hydrolase Chain: D: PDB Molecule:s-adenosylhomocysteine hydrolase; PDBTitle: crystal structure of recombinant rat-liver d244e mutant s-2 adenosylhomocysteine hydrolase
51 | d1mx3a1 |
| not modelled | 97.7 | 21 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain
52 | d2naca1 |
| not modelled | 97.7 | 14 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain
53 | c3g79A_ |
| not modelled | 97.7 | 11 | PDB header:oxidoreductase Chain: A: PDB Molecule:ndp-n-acetyl-d-galactosaminuronic acid dehydrogenase; PDBTitle: crystal structure of ndp-n-acetyl-d-galactosaminuronic acid2 dehydrogenase from methanosarcina mazei go1
54 | c2hk8B_ |
| not modelled | 97.7 | 17 | PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase from aquifex2 aeolicus at 2.35 angstrom resolution
55 | c1np3B_ |
| not modelled | 97.7 | 23 | PDB header:oxidoreductase Chain: B: PDB Molecule:ketol-acid reductoisomerase; PDBTitle: crystal structure of class i acetohydroxy acid isomeroreductase from2 pseudomonas aeruginosa
56 | c3oneA_ |
| not modelled | 97.7 | 19 | PDB header:hydrolase/hydrolase substrate Chain: A: PDB Molecule:adenosylhomocysteinase; PDBTitle: crystal structure of lupinus luteus s-adenosyl-l-homocysteine2 hydrolase in complex with adenine
57 | d1li4a1 |
| not modelled | 97.7 | 22 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain
58 | c1nytC_ |
| not modelled | 97.7 | 15 | PDB header:oxidoreductase Chain: C: PDB Molecule:shikimate 5-dehydrogenase; PDBTitle: shikimate dehydrogenase aroe complexed with nadp+
59 | d1gdha1 |
| not modelled | 97.7 | 15 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain
60 | c3n7uD_ |
| not modelled | 97.7 | 22 | PDB header:oxidoreductase Chain: D: PDB Molecule:formate dehydrogenase; PDBTitle: nad-dependent formate dehydrogenase from higher-plant arabidopsis2 thaliana in complex with nad and azide
61 | d1np3a2 |
| not modelled | 97.7 | 23 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
62 | c2o3jC_ |
| not modelled | 97.7 | 18 | PDB header:oxidoreductase Chain: C: PDB Molecule:udp-glucose 6-dehydrogenase; PDBTitle: structure of caenorhabditis elegans udp-glucose dehydrogenase
63 | c2j6iC_ |
| not modelled | 97.7 | 16 | PDB header:oxidoreductase Chain: C: PDB Molecule:formate dehydrogenase; PDBTitle: candida boidinii formate dehydrogenase (fdh) c-terminal2 mutant
64 | c2dbqA_ |
| not modelled | 97.7 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:glyoxylate reductase; PDBTitle: crystal structure of glyoxylate reductase (ph0597) from pyrococcus2 horikoshii ot3, complexed with nadp (i41)
65 | d1vpda2 |
| not modelled | 97.6 | 23 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
66 | d1a4ia1 |
| not modelled | 97.6 | 19 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain
67 | c3ojlA_ |
| not modelled | 97.6 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:cap5o; PDBTitle: native structure of the udp-n-acetyl-mannosamine dehydrogenase cap5o2 from staphylococcus aureus
68 | c2g76A_ |
| not modelled | 97.6 | 21 | PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of human 3-phosphoglycerate dehydrogenase
69 | c3n58D_ |
| not modelled | 97.6 | 20 | PDB header:hydrolase Chain: D: PDB Molecule:adenosylhomocysteinase; PDBTitle: crystal structure of s-adenosyl-l-homocysteine hydrolase from brucella2 melitensis in ternary complex with nad and adenosine, orthorhombic3 form
70 | d2dlda1 |
| not modelled | 97.6 | 19 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain
71 | d1v8ba1 |
| not modelled | 97.6 | 22 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain
72 | d1leha1 |
| not modelled | 97.6 | 15 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain
73 | c1wwkA_ |
| not modelled | 97.6 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:phosphoglycerate dehydrogenase; PDBTitle: crystal structure of phosphoglycerate dehydrogenase from pyrococcus2 horikoshii ot3
74 | c2eklA_ |
| not modelled | 97.6 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: structure of st1218 protein from sulfolobus tokodaii
75 | d1j4aa1 |
| not modelled | 97.6 | 20 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain
76 | c2omeA_ |
| not modelled | 97.5 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:c-terminal-binding protein 2; PDBTitle: crystal structure of human ctbp2 dehydrogenase complexed with nad(h)
77 | c2nacA_ |
| not modelled | 97.5 | 14 | PDB header:oxidoreductase(aldehyde(d),nad+(a)) Chain: A: PDB Molecule:nad-dependent formate dehydrogenase; PDBTitle: high resolution structures of holo and apo formate dehydrogenase
78 | d1l7da1 |
| not modelled | 97.5 | 16 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain
79 | c2gcgB_ |
| not modelled | 97.5 | 23 | PDB header:oxidoreductase Chain: B: PDB Molecule:glyoxylate reductase/hydroxypyruvate reductase; PDBTitle: ternary crystal structure of human glyoxylate2 reductase/hydroxypyruvate reductase
80 | d1c1da1 |
| not modelled | 97.5 | 21 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain
81 | d2cvza2 |
| not modelled | 97.5 | 18 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
82 | d1bg6a2 |
| not modelled | 97.5 | 14 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
83 | c1yb4A_ |
| not modelled | 97.5 | 13 | PDB header:oxidoreductase Chain: A: PDB Molecule:tartronic semialdehyde reductase; PDBTitle: crystal structure of the tartronic semialdehyde reductase from2 salmonella typhimurium lt2
84 | d1mv8a2 |
| not modelled | 97.5 | 18 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
85 | d1p77a1 |
| not modelled | 97.5 | 14 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain
86 | c1v8bA_ |
| not modelled | 97.5 | 20 | PDB header:hydrolase Chain: A: PDB Molecule:adenosylhomocysteinase; PDBTitle: crystal structure of a hydrolase
87 | c3g0oA_ |
| not modelled | 97.5 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:3-hydroxyisobutyrate dehydrogenase; PDBTitle: crystal structure of 3-hydroxyisobutyrate dehydrogenase2 (ygbj) from salmonella typhimurium
88 | c1vpdA_ |
| not modelled | 97.5 | 18 | PDB header:oxidoreductase Chain: A: PDB Molecule:tartronate semialdehyde reductase; PDBTitle: x-ray crystal structure of tartronate semialdehyde reductase2 [salmonella typhimurium lt2]
89 | d1ygya1 |
| not modelled | 97.5 | 22 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain
90 | c1ygyA_ |
| not modelled | 97.5 | 26 | PDB header:oxidoreductase Chain: A: PDB Molecule:d-3-phosphoglycerate dehydrogenase; PDBTitle: crystal structure of d-3-phosphoglycerate dehydrogenase from2 mycobacterium tuberculosis
91 | c3prjB_ |
| not modelled | 97.5 | 17 | PDB header:oxidoreductase Chain: B: PDB Molecule:udp-glucose 6-dehydrogenase; PDBTitle: role of packing defects in the evolution of allostery and induced fit2 in human udp-glucose dehydrogenase.
92 | d1b0aa1 |
| not modelled | 97.5 | 23 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain
93 | c3pefA_ |
| not modelled | 97.4 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:6-phosphogluconate dehydrogenase, nad-binding; PDBTitle: crystal structure of gamma-hydroxybutyrate dehydrogenase from2 geobacter metallireducens in complex with nadp+
94 | c1bg6A_ |
| not modelled | 97.4 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:n-(1-d-carboxylethyl)-l-norvaline dehydrogenase; PDBTitle: crystal structure of the n-(1-d-carboxylethyl)-l-norvaline2 dehydrogenase from arthrobacter sp. strain 1c
95 | c3d64A_ |
| not modelled | 97.4 | 22 | PDB header:hydrolase Chain: A: PDB Molecule:adenosylhomocysteinase; PDBTitle: crystal structure of s-adenosyl-l-homocysteine hydrolase from2 burkholderia pseudomallei
96 | d1f0ya2 |
| not modelled | 97.4 | 18 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
97 | c2f1kD_ |
| not modelled | 97.4 | 20 | PDB header:oxidoreductase Chain: D: PDB Molecule:prephenate dehydrogenase; PDBTitle: crystal structure of synechocystis arogenate dehydrogenase
98 | d1uxja1 |
| not modelled | 97.4 | 23 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like
99 | d1e5qa1 |
| not modelled | 97.4 | 16 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
100 | c1j4aA_ |
| not modelled | 97.4 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:d-lactate dehydrogenase; PDBTitle: insights into domain closure, substrate specificity and2 catalysis of d-lactate dehydrogenase from lactobacillus3 bulgaricus
101 | c2uyyD_ |
| not modelled | 97.4 | 21 | PDB header:cytokine Chain: D: PDB Molecule:n-pac protein; PDBTitle: structure of the cytokine-like nuclear factor n-pac
102 | d1qp8a1 |
| not modelled | 97.4 | 21 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain
103 | c2pi1C_ |
| not modelled | 97.4 | 19 | PDB header:oxidoreductase Chain: C: PDB Molecule:d-lactate dehydrogenase; PDBTitle: crystal structure of d-lactate dehydrogenase from aquifex2 aeolicus complexed with nad and lactic acid
104 | c3hn2A_ |
| not modelled | 97.4 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:2-dehydropantoate 2-reductase; PDBTitle: crystal structure of 2-dehydropantoate 2-reductase from geobacter2 metallireducens gs-15
105 | c3gg9C_ |
| not modelled | 97.4 | 13 | PDB header:oxidoreductase Chain: C: PDB Molecule:d-3-phosphoglycerate dehydrogenase oxidoreductase protein; PDBTitle: crystal structure of putative d-3-phosphoglycerate dehydrogenase2 oxidoreductase from ralstonia solanacearum
106 | c3evtA_ |
| not modelled | 97.4 | 24 | PDB header:oxidoreductase Chain: A: PDB Molecule:phosphoglycerate dehydrogenase; PDBTitle: crystal structure of phosphoglycerate dehydrogenase from2 lactobacillus plantarum
107 | c1e5lA_ |
| not modelled | 97.4 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:saccharopine reductase; PDBTitle: apo saccharopine reductase from magnaporthe grisea
108 | c3hg7A_ |
| not modelled | 97.4 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:d-isomer specific 2-hydroxyacid dehydrogenase family PDBTitle: crystal structure of d-isomer specific 2-hydroxyacid dehydrogenase2 family protein from aeromonas salmonicida subsp. salmonicida a449
109 | c2eggA_ |
| not modelled | 97.3 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate 5-dehydrogenase; PDBTitle: crystal structure of shikimate 5-dehydrogenase (aroe) from2 geobacillus kaustophilus
110 | d1pjca1 |
| not modelled | 97.3 | 17 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Formate/glycerate dehydrogenases, NAD-domain
111 | c3o8qB_ |
| not modelled | 97.3 | 14 | PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase i alpha; PDBTitle: 1.45 angstrom resolution crystal structure of shikimate 5-2 dehydrogenase (aroe) from vibrio cholerae
112 | c3bazA_ |
| not modelled | 97.3 | 22 | PDB header:oxidoreductase Chain: A: PDB Molecule:hydroxyphenylpyruvate reductase; PDBTitle: structure of hydroxyphenylpyruvate reductase from coleus blumei in2 complex with nadp+
113 | c2q3eH_ |
| not modelled | 97.3 | 15 | PDB header:oxidoreductase Chain: H: PDB Molecule:udp-glucose 6-dehydrogenase; PDBTitle: structure of human udp-glucose dehydrogenase complexed with nadh and2 udp-glucose
114 | c2axqA_ |
| not modelled | 97.3 | 19 | PDB header:oxidoreductase Chain: A: PDB Molecule:saccharopine dehydrogenase; PDBTitle: apo histidine-tagged saccharopine dehydrogenase (l-glu2 forming) from saccharomyces cerevisiae
115 | c2d0iC_ |
| not modelled | 97.3 | 19 | PDB header:oxidoreductase Chain: C: PDB Molecule:dehydrogenase; PDBTitle: crystal structure ph0520 protein from pyrococcus horikoshii ot3
116 | d2f1ka2 |
| not modelled | 97.3 | 19 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:6-phosphogluconate dehydrogenase-like, N-terminal domain
117 | c2w2kB_ |
| not modelled | 97.3 | 15 | PDB header:oxidoreductase Chain: B: PDB Molecule:d-mandelate dehydrogenase; PDBTitle: crystal structure of the apo forms of rhodotorula graminis2 d-mandelate dehydrogenase at 1.8a.
118 | c3l6dB_ |
| not modelled | 97.3 | 16 | PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of putative oxidoreductase from pseudomonas putida2 kt2440
119 | c3gvxA_ |
| not modelled | 97.3 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:glycerate dehydrogenase related protein; PDBTitle: crystal structure of glycerate dehydrogenase related2 protein from thermoplasma acidophilum
120 | c3pgjB_ |
| not modelled | 97.3 | 13 | PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate dehydrogenase; PDBTitle: 2.49 angstrom resolution crystal structure of shikimate 5-2 dehydrogenase (aroe) from vibrio cholerae o1 biovar eltor str. n169613 in complex with shikimate

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0