08/01/2012 17:20:29 : INFO  : Run start: Sun Jan  8 17:20:28 GMT 2012
08/01/2012 17:20:36 : INFO  : Initialised job
08/01/2012 17:20:38 : INFO  : Renaming log file 'phyre2_20120108_172027.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/14fc734943229492/phyre_20120108_172027.log'
08/01/2012 17:20:40 : INFO  : Initialised job:
Sequence
>batch____
MADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLND
EWLMAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVT
TLVGEMAKAAGVNVGVGGNIGLPALMLLDDECELYVLELSSFQLETTSSLQAVAATILNV
TEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDALTMPIRGADERCVSFGVNMGDYHL
NHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFTGL
PHRFEVVLEHNGVRWINDSKATNVGSTEAALNGLHVDGTLHLLLGGDGKSADFSPLARYL
NGDNVRLYCFGRDGAQLAALRPEVAEQTETMEQAMRLLAPRVQPGDMVLLSPACASLDQF
KNFEQRGNEFARLAKELG

08/01/2012 17:20:42 : INFO  : Checked sequence
08/01/2012 17:20:46 : INFO  : Finding homologues with PSI-BLAST
08/01/2012 17:20:49 : INFO  : PSI-BLAST 3 iterations
08/01/2012 17:23:30 : INFO  : PSI-BLAST 5 iterations
08/01/2012 17:27:20 : INFO  : Finished PSI-BLAST
08/01/2012 17:27:23 : INFO  : Running Buildali to generate a3m file
08/01/2012 17:56:01 : INFO  : Converting to HMM
08/01/2012 17:56:11 : INFO  : Calibrating HMM
08/01/2012 17:56:30 : INFO  : Searching HMM database
08/01/2012 18:04:00 : INFO  : Finished buildali
08/01/2012 18:04:03 : INFO  : Predicting secondary structure
08/01/2012 18:04:14 : INFO  : Predicted secondary structure (PSI-Pred)
08/01/2012 18:04:17 : INFO  : Predicting Disordered regions
08/01/2012 18:04:23 : INFO  : Predicted Disorder (Disopred)
08/01/2012 18:04:25 : INFO  : Running memsat_svm check
08/01/2012 18:08:23 : INFO  : Running memsat_svm full
08/01/2012 18:14:33 : INFO  : Predicted Transmembrane (memsat_svm) ID '14fc734943229492'
08/01/2012 18:14:35 : INFO  : Initialising fold library search
08/01/2012 18:14:40 : INFO  : Initialised search input
08/01/2012 18:14:43 : INFO  : Building Ensemble models
08/01/2012 18:14:47 : INFO  : Building hh.c3uagA_.model.1.pdb
08/01/2012 18:15:08 : INFO  : Building c3uagA_.1.pdb
08/01/2012 18:15:29 : INFO  : Building c3lk7A_.2.pdb
08/01/2012 18:15:52 : INFO  : Building c2f00A_.3.pdb
08/01/2012 18:16:12 : INFO  : Building c3hn7A_.4.pdb
08/01/2012 18:16:32 : INFO  : Building c1j6uA_.5.pdb
08/01/2012 18:16:52 : INFO  : Building c1gqqA_.6.pdb
08/01/2012 18:17:12 : INFO  : Building c3eagA_.7.pdb
08/01/2012 18:17:31 : INFO  : Building c2am1A_.8.pdb
08/01/2012 18:17:51 : INFO  : Building c1e8cB_.9.pdb
08/01/2012 18:18:11 : INFO  : Building c1gg4A_.10.pdb
08/01/2012 18:18:31 : INFO  : Building c2wtzC_.11.pdb
08/01/2012 18:18:51 : INFO  : Building c2vosA_.12.pdb
08/01/2012 18:19:11 : INFO  : Building c1w78A_.13.pdb
08/01/2012 18:19:31 : INFO  : Building c2gc6A_.14.pdb
08/01/2012 18:19:51 : INFO  : Building c3n2aA_.15.pdb
08/01/2012 18:20:12 : INFO  : Building c1o5zA_.16.pdb
08/01/2012 18:20:32 : INFO  : Building d2jfga3.17.pdb
08/01/2012 18:20:53 : INFO  : Building d2jfga2.18.pdb
08/01/2012 18:21:13 : INFO  : Building d1p3da3.19.pdb
08/01/2012 18:21:33 : INFO  : Building d1e8ca3.20.pdb
08/01/2012 18:22:19 : INFO  : Finished HH model building
08/01/2012 18:22:22 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
08/01/2012 18:23:23 : INFO  : html domain output complete ID '14fc734943229492'
08/01/2012 21:58:44 : INFO  : Run end  : Sun Jan  8 21:58:42 GMT 2012
