20 c1vciA_ Probab=99.21   E-value=1.3e-09  Score=79.27  Aligned_columns=196  Identities=23%

Q ss_pred             CCEEEEEEEC-------CCCEEEEEEEECC--EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9104999933-------3441567997088--389982698886669999999844754554345111314454555664
Q batch____         1 MILERVEIVG-------FRGINRLSLMLEQ--NNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGRE   71 (552)
Q Consensus         1 M~I~~i~I~N-------FR~i~~~~i~l~~--~tvlvG~NgsGKStiL~Al~~~l~~~~~~~~~~~~d~~~~~~~~~~~~   71 (552)
                      |+-..|+++|       +..++++++.+.+  +..|+|+|||||||+|++|.-+..+..+...+...+            
T Consensus         2 ~~M~~i~~~~l~~~y~~~~~L~~isl~i~~Ge~~~l~G~nGsGKsTll~~l~g~~~p~~G~i~~~g~~------------   69 (353)
T c1vciA_           2 IKMVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRD------------   69 (353)
T ss_dssp             CCCCCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEE------------
T ss_pred             CEEEEEEEEEEEEEECCEEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEE------------
T ss_conf             32108999418998488898632324688997899987999888899999966874760079988888------------


Q ss_pred             CEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             23999999815544421023320011110246777127999961233355653102331144564333221046778766
Q batch____        72 HHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLV  151 (552)
Q Consensus        72 ~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (552)
                                                                                                      
T Consensus        70 --------------------------------------------------------------------------------   69 (353)
T c1vciA_          70 --------------------------------------------------------------------------------   69 (353)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
T ss_conf             --------------------------------------------------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             42002432001233101101455553224446788888876665454210134689999999999999866422232233
Q batch____       152 RLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYR  231 (552)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  231 (552)
                                    ......................+..................+.+...                   
T Consensus        70 --------------~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~l~~~-------------------  116 (353)
T c1vciA_          70 --------------VTYLPPKDRNISMVFQHMTVYENIAFPLKKFPKDEIDKRVRWAAELL-------------------  116 (353)
T ss_dssp             --------------CTTSCGGGTTEEEECCCCCHHHHHHTTCCCCCHHHHHHHHHHHHHHT-------------------
T ss_pred             --------------CCCCCHHHCEEECCCCCCEEEECCCCCCHHHHHHHCCHHHHHHHHHC-------------------
T ss_conf             --------------74578323022023332000001211210000110000257876313-------------------


Q ss_pred             HHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf             32101223301232037755422236743057899999999999755641135657548830531257889999999999
Q batch____       232 LMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLL  311 (552)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~illIDEPE~hLHP~~q~~l~~~l  311 (552)
                                   .............+.|.++...+.-...            ..+.++++|||-++|.|..++.+++.|
T Consensus       117 -------------~~~~~~~~~~~~LSgGq~qrv~iaral~------------~~p~llllDEP~s~LD~~~~~~~~~~l  171 (353)
T c1vciA_         117 -------------QIEELLNRYPAQLSGGQRQRVAVARAIV------------VEPDVLLMDEPLSNLDAKLRVAMRAEI  171 (353)
T ss_dssp             -------------TCGGGTTCCGGGCCSSCHHHHHHHHHHT------------TCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred             -------------CCCEEECCCCEECCCCHHHHHHHHHHHC------------CCCEEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             -------------8510110252035766157688889850------------786599995610198889999999999


Q ss_pred             HHC----CCEEEEECCCHHHHHCCCHHHEEEEEECCCCEEEE
Q ss_conf             856----98299941898997407910279999738967999
Q batch____       312 NLL----PLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAW  349 (552)
Q Consensus       312 ~~~----~~QviiTTHSp~li~~~~~~~i~~l~~~~~~~~~~  349 (552)
                      .++    +.-+|++||.+.-+..+ .+.|.++.  +|+....
T Consensus       172 ~~~~~~~g~tvi~vtH~~~~~~~~-~drv~vl~--~G~i~~~  210 (353)
T c1vciA_         172 KKLQQKLKVTTIYVTHDQVEAMTM-GDRIAVMN--RGQLLQI  210 (353)
T ss_dssp             HHHHHHHCCEEEEEESCHHHHHHH-CSEEEEEE--TTEEEEE
T ss_pred             HHHHHHCCCEEEEEEECHHHHHHH-CCEEEEEE--CCEEEEE
T ss_conf             999997398246773057888864-48899910--4757254