BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (126 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P15068 Protein trbF n=6 Tax=Escherichia coli RepID=TRBF... 261 5e-69 UniRef50_Q6SJ01 Conjugal transfer protein TrbF n=16 Tax=root Rep... 124 7e-28 UniRef50_A6TII5 Putative uncharacterized protein trbF n=2 Tax=Kl... 63 4e-09 >UniRef50_P15068 Protein trbF n=6 Tax=Escherichia coli RepID=TRBF_ECOLI Length = 126 Score = 261 bits (667), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 126/126 (100%), Positives = 126/126 (100%) Query: 1 MRENKSNPELKIRSTERDYKYISRITGRYAGLSLVFLTAGIVLWTVMDIIFDACIDSWKA 60 MRENKSNPELKIRSTERDYKYISRITGRYAGLSLVFLTAGIVLWTVMDIIFDACIDSWKA Sbjct: 1 MRENKSNPELKIRSTERDYKYISRITGRYAGLSLVFLTAGIVLWTVMDIIFDACIDSWKA 60 Query: 61 DPELNNSSYMWNILIYAIPYTLYALAAGFLVTFFSVPNVRINIRKYRDIPAEMSYAPGEH 120 DPELNNSSYMWNILIYAIPYTLYALAAGFLVTFFSVPNVRINIRKYRDIPAEMSYAPGEH Sbjct: 61 DPELNNSSYMWNILIYAIPYTLYALAAGFLVTFFSVPNVRINIRKYRDIPAEMSYAPGEH 120 Query: 121 IKGGQE 126 IKGGQE Sbjct: 121 IKGGQE 126 >UniRef50_Q6SJ01 Conjugal transfer protein TrbF n=16 Tax=root RepID=Q6SJ01_ECOLX Length = 141 Score = 124 bits (312), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 56/97 (57%), Positives = 69/97 (71%) Query: 1 MRENKSNPELKIRSTERDYKYISRITGRYAGLSLVFLTAGIVLWTVMDIIFDACIDSWKA 60 M+E +++ ELK R T+RDY Y R++ Y L VF+ AG LW +M IFDACIDSWKA Sbjct: 12 MKEKRNDAELKNRKTKRDYDYERRVSDIYFDLFFVFVAAGTFLWVIMHSIFDACIDSWKA 71 Query: 61 DPELNNSSYMWNILIYAIPYTLYALAAGFLVTFFSVP 97 DPELNN YMWNIL+Y IPYTL+A A GFL+ + P Sbjct: 72 DPELNNFRYMWNILMYVIPYTLWAFAGGFLIVYVRNP 108 >UniRef50_A6TII5 Putative uncharacterized protein trbF n=2 Tax=Klebsiella pneumoniae RepID=A6TII5_KLEP7 Length = 147 Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 1 MRENKSNPELKIRSTERDYKYISRITGRYAGLSLVFLTAGIVLWTVMDIIFDACIDSWKA 60 ++++ KI + ++ + R Y L +VFLTAG +L +M +F+ C+D W A Sbjct: 19 LKDSGQTAAEKIEQLKPEFIHRERRLEIYLELFIVFLTAGALLLWIMRFLFNLCVDDWIA 78 Query: 61 DPELNNSSYMWNILIYAIPYTLYALAAGFLVT 92 +L +WNI++YAIPY L A+ GF V Sbjct: 79 SGDLRVKD-LWNIMMYAIPYALIAVGVGFFVA 109 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P15068 Protein trbF n=6 Tax=Escherichia coli RepID=TRBF... 212 2e-54 UniRef50_Q6SJ01 Conjugal transfer protein TrbF n=16 Tax=root Rep... 159 2e-38 UniRef50_A6TII5 Putative uncharacterized protein trbF n=2 Tax=Kl... 135 4e-31 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P15068 Protein trbF n=6 Tax=Escherichia coli RepID=TRBF_ECOLI Length = 126 Score = 212 bits (541), Expect = 2e-54, Method: Composition-based stats. Identities = 126/126 (100%), Positives = 126/126 (100%) Query: 1 MRENKSNPELKIRSTERDYKYISRITGRYAGLSLVFLTAGIVLWTVMDIIFDACIDSWKA 60 MRENKSNPELKIRSTERDYKYISRITGRYAGLSLVFLTAGIVLWTVMDIIFDACIDSWKA Sbjct: 1 MRENKSNPELKIRSTERDYKYISRITGRYAGLSLVFLTAGIVLWTVMDIIFDACIDSWKA 60 Query: 61 DPELNNSSYMWNILIYAIPYTLYALAAGFLVTFFSVPNVRINIRKYRDIPAEMSYAPGEH 120 DPELNNSSYMWNILIYAIPYTLYALAAGFLVTFFSVPNVRINIRKYRDIPAEMSYAPGEH Sbjct: 61 DPELNNSSYMWNILIYAIPYTLYALAAGFLVTFFSVPNVRINIRKYRDIPAEMSYAPGEH 120 Query: 121 IKGGQE 126 IKGGQE Sbjct: 121 IKGGQE 126 >UniRef50_Q6SJ01 Conjugal transfer protein TrbF n=16 Tax=root RepID=Q6SJ01_ECOLX Length = 141 Score = 159 bits (403), Expect = 2e-38, Method: Composition-based stats. Identities = 62/110 (56%), Positives = 76/110 (69%), Gaps = 3/110 (2%) Query: 1 MRENKSNPELKIRSTERDYKYISRITGRYAGLSLVFLTAGIVLWTVMDIIFDACIDSWKA 60 M+E +++ ELK R T+RDY Y R++ Y L VF+ AG LW +M IFDACIDSWKA Sbjct: 12 MKEKRNDAELKNRKTKRDYDYERRVSDIYFDLFFVFVAAGTFLWVIMHSIFDACIDSWKA 71 Query: 61 DPELNNSSYMWNILIYAIPYTLYALAAGFLVTFFSVP-NVRIN--IRKYR 107 DPELNN YMWNIL+Y IPYTL+A A GFL+ + P N IN IR +R Sbjct: 72 DPELNNFRYMWNILMYVIPYTLWAFAGGFLIVYVRNPLNELINGGIRIFR 121 >UniRef50_A6TII5 Putative uncharacterized protein trbF n=2 Tax=Klebsiella pneumoniae RepID=A6TII5_KLEP7 Length = 147 Score = 135 bits (340), Expect = 4e-31, Method: Composition-based stats. Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 1/92 (1%) Query: 1 MRENKSNPELKIRSTERDYKYISRITGRYAGLSLVFLTAGIVLWTVMDIIFDACIDSWKA 60 ++++ KI + ++ + R Y L +VFLTAG +L +M +F+ C+D W A Sbjct: 19 LKDSGQTAAEKIEQLKPEFIHRERRLEIYLELFIVFLTAGALLLWIMRFLFNLCVDDWIA 78 Query: 61 DPELNNSSYMWNILIYAIPYTLYALAAGFLVT 92 +L +WNI++YAIPY L A+ GF V Sbjct: 79 SGDLRVKD-LWNIMMYAIPYALIAVGVGFFVA 109 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.322 0.139 0.421 Lambda K H 0.267 0.0428 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 547,464,357 Number of Sequences: 3077464 Number of extensions: 21139077 Number of successful extensions: 52038 Number of sequences better than 1.0e-01: 3 Number of HSP's better than 0.1 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52030 Number of HSP's gapped (non-prelim): 6 length of query: 126 length of database: 1,040,396,356 effective HSP length: 92 effective length of query: 34 effective length of database: 757,269,668 effective search space: 25747168712 effective search space used: 25747168712 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 87 (38.1 bits)