Phyre 2 Results for P77598

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Email | l.a.kelley@imperial.ac.uk
Description | P77598
Date | Thu Jan 5 12:30:54 GMT 2012
Unique Job ID | 144310f1db1fb91e

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d2hh8a1
Top template information
Fold:YdfO-like Superfamily:YdfO-like Family:YdfO-like
Confidence and coverage
Confidence: | 100.0% | Coverage: | 93%
127 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | A | Q | V | A | I | F | K | E | I | F | D | Q | V | R | K | D | L | N | C | E | L | F | Y | S | E | L | K | R | H | N | V | S | H | Y | I | Y | Y | L | A | T | D | N | I | H | I | V | L | E | N | D | N | T | V | L | I | K | G | L | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | K | V | V | N | V | K | F | S | R | N | T | H | L | I | E | T | S | Y | D | R | L | K | S | R | E | I | T | F | Q | Q | Y | R | E | N | L | A | K | A | G | V | F | R | W | I | T | N | I | H | E | H | K | R | Y | Y | Y | T | F | D | N | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | .
Sequence |  | L | L | F | T | E | S | I | Q | N | T | T | Q | I | F | P | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d2hh8a1 |

### PDB 2hh8 chain A domain 1

Region: 2 - 128
Aligned: 127
Modelled: 127
Confidence: 100.0%
Identity: 80%
Fold: YdfO-like
Superfamily: YdfO-like
Family: YdfO-like

Phyre2
2 |
| d3elga1 |

### PDB 3elg chain A domain 1

Region: 30 - 122
Aligned: 85
Modelled: 93
Confidence: 81.9%
Identity: 11%
Fold: BLIP-like
Superfamily: BT0923-like
Family: BT0923-like

Phyre2
3 |
| c2qlxA_ |

### PDB 2qlx chain A

Region: 2 - 46
Aligned: 40
Modelled: 44
Confidence: 41.0%
Identity: 18%
PDB header:isomerase
Chain: A: PDB Molecule:l-rhamnose mutarotase;
PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum in complex with l-rhamnose

Phyre2
4 |
| c2qlwA_ |

### PDB 2qlw chain A

Region: 2 - 46
Aligned: 40
Modelled: 44
Confidence: 41.0%
Identity: 18%
PDB header:isomerase
Chain: A: PDB Molecule:rhau;
PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum

Phyre2
5 |
| d3duea1 |

### PDB 3due chain A domain 1

Region: 29 - 126
Aligned: 90
Modelled: 98
Confidence: 39.4%
Identity: 4%
Fold: BLIP-like
Superfamily: BT0923-like
Family: BT0923-like

Phyre2
6 |
| c1f8aB_ |

### PDB 1f8a chain B

Region: 5 - 87
Aligned: 60
Modelled: 63
Confidence: 26.7%
Identity: 10%
PDB header:isomerase
Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase nima-
PDBTitle: structural basis for the phosphoserine-proline recognition2 by group iv ww domains

Phyre2
7 |
| c2ph7B_ |

### PDB 2ph7 chain B

Region: 88 - 111
Aligned: 24
Modelled: 24
Confidence: 26.6%
Identity: 38%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein af_2093;
PDBTitle: crystal structure of af2093 from archaeoglobus fulgidus

Phyre2
8 |
| c1irjG_ |

### PDB 1irj chain G

Region: 72 - 97
Aligned: 26
Modelled: 26
Confidence: 25.8%
Identity: 15%
PDB header:metal binding protein
Chain: G: PDB Molecule:migration inhibitory factor-related protein 14;
PDBTitle: crystal structure of the mrp14 complexed with chaps

Phyre2
9 |
| c2w3nA_ |

### PDB 2w3n chain A

Region: 9 - 50
Aligned: 42
Modelled: 42
Confidence: 25.2%
Identity: 24%
PDB header:lyase
Chain: A: PDB Molecule:carbonic anhydrase 2;
PDBTitle: structure and inhibition of the co2-sensing carbonic2 anhydrase can2 from the pathogenic fungus cryptococcus3 neoformans

Phyre2
10 |
| d1x8da1 |

### PDB 1x8d chain A domain 1

Region: 2 - 48
Aligned: 42
Modelled: 42
Confidence: 24.3%
Identity: 14%
Fold: Ferredoxin-like
Superfamily: Dimeric alpha+beta barrel
Family: YiiL-like

Phyre2
11 |
| d1avsa_ |

### PDB 1avs chain A

Region: 2 - 97
Aligned: 64
Modelled: 64
Confidence: 23.4%
Identity: 17%
Fold: EF Hand-like
Superfamily: EF-hand
Family: Calmodulin-like

Phyre2
12 |
| c2k7bA_ |

### PDB 2k7b chain A

Region: 2 - 97
Aligned: 64
Modelled: 64
Confidence: 23.2%
Identity: 14%
PDB header:metal binding protein
Chain: A: PDB Molecule:calcium-binding protein 1;
PDBTitle: nmr structure of mg2+-bound cabp1 n-domain

Phyre2
13 |
| c3l23A_ |

### PDB 3l23 chain A

Region: 83 - 110
Aligned: 28
Modelled: 27
Confidence: 21.6%
Identity: 11%
PDB header:isomerase
Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase;
PDBTitle: crystal structure of sugar phosphate isomerase/epimerase2 (yp_001303399.1) from parabacteroides distasonis atcc 8503 at 1.70 a3 resolution

Phyre2
14 |
| c3ec8A_ |

### PDB 3ec8 chain A

Region: 42 - 92
Aligned: 46
Modelled: 51
Confidence: 18.7%
Identity: 11%
PDB header:cell adhesion
Chain: A: PDB Molecule:putative uncharacterized protein flj10324;
PDBTitle: the crystal structure of the ra domain of flj10324 (radil)

Phyre2
15 |
| c3obeB_ |

### PDB 3obe chain B

Region: 83 - 109
Aligned: 27
Modelled: 23
Confidence: 17.9%
Identity: 11%
PDB header:isomerase
Chain: B: PDB Molecule:sugar phosphate isomerase/epimerase;
PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_3400)2 from parabacteroides distasonis atcc 8503 at 1.70 a resolution

Phyre2
16 |
| d1xk4a1 |

### PDB 1xk4 chain A domain 1

Region: 67 - 97
Aligned: 31
Modelled: 31
Confidence: 17.4%
Identity: 13%
Fold: EF Hand-like
Superfamily: EF-hand
Family: S100 proteins

Phyre2
17 |
| d1ekja_ |

### PDB 1ekj chain A

Region: 9 - 50
Aligned: 42
Modelled: 42
Confidence: 16.6%
Identity: 10%
Fold: Resolvase-like
Superfamily: beta-carbonic anhydrase, cab
Family: beta-carbonic anhydrase, cab

Phyre2
18 |
| d1m39a_ |

### PDB 1m39 chain A

Region: 7 - 93
Aligned: 55
Modelled: 55
Confidence: 16.4%
Identity: 20%
Fold: EF Hand-like
Superfamily: EF-hand
Family: Calmodulin-like

Phyre2
19 |
| d1g5ca_ |

### PDB 1g5c chain A

Region: 28 - 51
Aligned: 24
Modelled: 24
Confidence: 15.8%
Identity: 13%
Fold: Resolvase-like
Superfamily: beta-carbonic anhydrase, cab
Family: beta-carbonic anhydrase, cab

Phyre2
20 |
| c2i18A_ |

### PDB 2i18 chain A

Region: 48 - 93
Aligned: 45
Modelled: 46
Confidence: 15.7%
Identity: 9%
PDB header:metal binding protein
Chain: A: PDB Molecule:calcium-binding protein;
PDBTitle: the refined structure of c-terminal domain of an ef-hand2 calcium binding protein from entamoeba histolytica

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d2hh8a1 |
|  | 100.0 | 80 | Fold:YdfO-like Superfamily:YdfO-like Family:YdfO-like
2 | d3elga1 |
|  | 81.9 | 11 | Fold:BLIP-like Superfamily:BT0923-like Family:BT0923-like
3 | c2qlxA_ |
|  | 41.0 | 18 | PDB header:isomerase Chain: A: PDB Molecule:l-rhamnose mutarotase; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum in complex with l-rhamnose
4 | c2qlwA_ |
|  | 41.0 | 18 | PDB header:isomerase Chain: A: PDB Molecule:rhau; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum
5 | d3duea1 |
|  | 39.4 | 4 | Fold:BLIP-like Superfamily:BT0923-like Family:BT0923-like
6 | c1f8aB_ |
|  | 26.7 | 10 | PDB header:isomerase Chain: B: PDB Molecule:peptidyl-prolyl cis-trans isomerase nima- PDBTitle: structural basis for the phosphoserine-proline recognition2 by group iv ww domains
7 | c2ph7B_ |
|  | 26.6 | 38 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein af_2093; PDBTitle: crystal structure of af2093 from archaeoglobus fulgidus
8 | c1irjG_ |
|  | 25.8 | 15 | PDB header:metal binding protein Chain: G: PDB Molecule:migration inhibitory factor-related protein 14; PDBTitle: crystal structure of the mrp14 complexed with chaps
9 | c2w3nA_ |
|  | 25.2 | 24 | PDB header:lyase Chain: A: PDB Molecule:carbonic anhydrase 2; PDBTitle: structure and inhibition of the co2-sensing carbonic2 anhydrase can2 from the pathogenic fungus cryptococcus3 neoformans
10 | d1x8da1 |
|  | 24.3 | 14 | Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:YiiL-like
11 | d1avsa_ |
|  | 23.4 | 17 | Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like
12 | c2k7bA_ |
|  | 23.2 | 14 | PDB header:metal binding protein Chain: A: PDB Molecule:calcium-binding protein 1; PDBTitle: nmr structure of mg2+-bound cabp1 n-domain
13 | c3l23A_ |
|  | 21.6 | 11 | PDB header:isomerase Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of sugar phosphate isomerase/epimerase2 (yp_001303399.1) from parabacteroides distasonis atcc 8503 at 1.70 a3 resolution
14 | c3ec8A_ |
|  | 18.7 | 11 | PDB header:cell adhesion Chain: A: PDB Molecule:putative uncharacterized protein flj10324; PDBTitle: the crystal structure of the ra domain of flj10324 (radil)
15 | c3obeB_ |
|  | 17.9 | 11 | PDB header:isomerase Chain: B: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_3400)2 from parabacteroides distasonis atcc 8503 at 1.70 a resolution
16 | d1xk4a1 |
|  | 17.4 | 13 | Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins
17 | d1ekja_ |
|  | 16.6 | 10 | Fold:Resolvase-like Superfamily:beta-carbonic anhydrase, cab Family:beta-carbonic anhydrase, cab
18 | d1m39a_ |
|  | 16.4 | 20 | Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like
19 | d1g5ca_ |
|  | 15.8 | 13 | Fold:Resolvase-like Superfamily:beta-carbonic anhydrase, cab Family:beta-carbonic anhydrase, cab
20 | c2i18A_ |
|  | 15.7 | 9 | PDB header:metal binding protein Chain: A: PDB Molecule:calcium-binding protein; PDBTitle: the refined structure of c-terminal domain of an ef-hand2 calcium binding protein from entamoeba histolytica
21 | c3ot2B_ |
| not modelled | 14.2 | 15 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative nuclease belonging to duf8202 (ava_3926) from anabaena variabilis atcc 29413 at 1.96 a resolution
22 | c3ot2A_ |
| not modelled | 14.2 | 15 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative nuclease belonging to duf8202 (ava_3926) from anabaena variabilis atcc 29413 at 1.96 a resolution
23 | d1k8ua_ |
| not modelled | 14.0 | 31 | Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins
24 | d1g33a_ |
| not modelled | 13.2 | 19 | Fold:EF Hand-like Superfamily:EF-hand Family:Parvalbumin
25 | d1j55a_ |
| not modelled | 12.9 | 12 | Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins
26 | c3ucoB_ |
| not modelled | 12.6 | 15 | PDB header:lyase/lyase inhibitor Chain: B: PDB Molecule:carbonic anhydrase; PDBTitle: coccomyxa beta-carbonic anhydrase in complex with iodide
27 | c2kaxA_ |
| not modelled | 12.3 | 23 | PDB header:metal binding protein Chain: A: PDB Molecule:protein s100-a5; PDBTitle: solution structure and dynamics of s100a5 in the apo and2 ca2+ -bound states
28 | d1e8aa_ |
| not modelled | 12.2 | 19 | Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins
29 | c2rqsA_ |
| not modelled | 12.2 | 15 | PDB header:isomerase Chain: A: PDB Molecule:parvulin-like peptidyl-prolyl isomerase; PDBTitle: 3d structure of pin from the psychrophilic archeon cenarcheaum2 symbiosum (cspin)
30 | d1pvaa_ |
| not modelled | 11.7 | 12 | Fold:EF Hand-like Superfamily:EF-hand Family:Parvalbumin
31 | d4icba_ |
| not modelled | 11.6 | 15 | Fold:EF Hand-like Superfamily:EF-hand Family:Calbindin D9K
32 | d1wxaa1 |
| not modelled | 11.5 | 6 | Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD
33 | d1i6pa_ |
| not modelled | 11.2 | 14 | Fold:Resolvase-like Superfamily:beta-carbonic anhydrase, cab Family:beta-carbonic anhydrase, cab
34 | c2rgiA_ |
| not modelled | 11.1 | 27 | PDB header:metal binding protein Chain: A: PDB Molecule:protein s100-a2; PDBTitle: crystal structure of ca2+-free s100a2 at 1.6 a resolution
35 | c2hklB_ |
| not modelled | 11.1 | 9 | PDB header:transferase Chain: B: PDB Molecule:l,d-transpeptidase; PDBTitle: crystal structure of enterococcus faecium l,d-2 transpeptidase c442s mutant
36 | c2z4hB_ |
| not modelled | 11.1 | 12 | PDB header:signaling protein activator Chain: B: PDB Molecule:copper homeostasis protein cutf; PDBTitle: crystal structure of the cpx pathway activator nlpe from2 escherichia coli
37 | c2ggmA_ |
| not modelled | 11.0 | 14 | PDB header:cell cycle Chain: A: PDB Molecule:centrin-2; PDBTitle: human centrin 2 xeroderma pigmentosum group c protein2 complex
38 | d1xk4c1 |
| not modelled | 10.8 | 15 | Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins
39 | c2a4jA_ |
| not modelled | 10.6 | 13 | PDB header:structural protein Chain: A: PDB Molecule:centrin 2; PDBTitle: solution structure of the c-terminal domain (t94-y172) of2 the human centrin 2 in complex with a 17 residues peptide3 (p1-xpc) from xeroderma pigmentosum group c protein
40 | c2k2aA_ |
| not modelled | 10.4 | 23 | PDB header:contractile protein Chain: A: PDB Molecule:troponin c; PDBTitle: solution structure of the apo c terminal domain of lethocerus troponin2 c isoform f1
41 | c2b1uA_ |
| not modelled | 10.3 | 11 | PDB header:metal binding protein Chain: A: PDB Molecule:calmodulin-like protein 5; PDBTitle: solution structure of calmodulin-like skin protein c2 terminal domain
42 | c2pmyB_ |
| not modelled | 10.2 | 24 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:ras and ef-hand domain-containing protein; PDBTitle: ef-hand domain of human rasef
43 | c2a5vB_ |
| not modelled | 10.1 | 11 | PDB header:lyase Chain: B: PDB Molecule:carbonic anhydrase (carbonate dehydratase) (carbonic PDBTitle: crystal structure of m. tuberculosis beta carbonic anhydrase, rv3588c,2 tetrameric form
44 | d1eq3a_ |
| not modelled | 9.9 | 5 | Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase
45 | c2a8cE_ |
| not modelled | 9.9 | 11 | PDB header:lyase Chain: E: PDB Molecule:carbonic anhydrase 2; PDBTitle: haemophilus influenzae beta-carbonic anhydrase
46 | c1ponB_ |
| not modelled | 9.7 | 20 | PDB header:calcium-binding protein Chain: B: PDB Molecule:troponin c; PDBTitle: site iii-site iv troponin c heterodimer, nmr
47 | d1c7va_ |
| not modelled | 9.6 | 9 | Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like
48 | c3p6lA_ |
| not modelled | 9.5 | 4 | PDB header:isomerase Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_1903)2 from parabacteroides distasonis atcc 8503 at 1.85 a resolution
49 | c2kz2A_ |
| not modelled | 9.4 | 0 | PDB header:metal binding protein Chain: A: PDB Molecule:calmodulin; PDBTitle: calmodulin, c-terminal domain, f92e mutant
50 | d1oqpa_ |
| not modelled | 9.4 | 19 | Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like
51 | d1zmba1 |
| not modelled | 9.4 | 12 | Fold:Flavodoxin-like Superfamily:SGNH hydrolase Family:Putative acetylxylan esterase-like
52 | d1a4pa_ |
| not modelled | 9.3 | 16 | Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins
53 | d1dj0a_ |
| not modelled | 9.3 | 12 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase I TruA
54 | d1urra_ |
| not modelled | 9.3 | 21 | Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like
55 | c2l0vB_ |
| not modelled | 9.2 | 15 | PDB header:metal binding protein Chain: B: PDB Molecule:protein s100-a16; PDBTitle: solution structure of calcium(ii) bound s100a16
56 | d1apsa_ |
| not modelled | 8.9 | 7 | Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like
57 | d2p5zx2 |
| not modelled | 8.8 | 12 | Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like
58 | c1q88B_ |
| not modelled | 8.8 | 11 | PDB header:dna binding protein Chain: B: PDB Molecule:39 kda initiator binding protein; PDBTitle: crystal structure of the c-domain of the t.vaginalis inr2 binding protein, ibp39 (monoclinic form)
59 | d1ksoa_ |
| not modelled | 8.6 | 27 | Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins
60 | c3h4sE_ |
| not modelled | 8.6 | 3 | PDB header:motor protein/calcium binding protein Chain: E: PDB Molecule:kcbp interacting ca2+-binding protein; PDBTitle: structure of the complex of a mitotic kinesin with its2 calcium binding regulator
61 | d2gaxa1 |
| not modelled | 8.6 | 19 | Fold:Peptidyl-tRNA hydrolase II Superfamily:Peptidyl-tRNA hydrolase II Family:Peptidyl-tRNA hydrolase II
62 | d1yuta1 |
| not modelled | 8.2 | 16 | Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins
63 | d2pv2a1 |
| not modelled | 8.2 | 17 | Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase
64 | d1j6ya_ |
| not modelled | 8.1 | 9 | Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase
65 | c3ddcB_ |
| not modelled | 8.1 | 13 | PDB header:hydrolase/apoptosis Chain: B: PDB Molecule:ras association domain-containing family protein 5; PDBTitle: crystal structure of nore1a in complex with ras
66 | d3d37a1 |
| not modelled | 8.1 | 17 | Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like
67 | d2pq3a1 |
| not modelled | 8.1 | 13 | Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like
68 | d1m45a_ |
| not modelled | 8.0 | 19 | Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like
69 | c2p5zX_ |
| not modelled | 8.0 | 12 | PDB header:structural genomics, unknown function Chain: X: PDB Molecule:type vi secretion system component; PDBTitle: the e. coli c3393 protein is a component of the type vi secretion2 system and exhibits structural similarity to t4 bacteriophage tail3 proteins gp27 and gp5
70 | d1cb1a_ |
| not modelled | 8.0 | 19 | Fold:EF Hand-like Superfamily:EF-hand Family:Calbindin D9K
71 | d1qlka_ |
| not modelled | 7.9 | 15 | Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins
72 | c1bomB_ |
| not modelled | 7.8 | 17 | PDB header:insulin-like brain-secretory peptide Chain: B: PDB Molecule:bombyxin-ii,bombyxin a-6; PDBTitle: three-dimensional structure of bombyxin-ii, an insulin-2 related brain-secretory peptide of the silkmoth bombyx3 mori: comparison with insulin and relaxin
73 | d1wrka1 |
| not modelled | 7.7 | 10 | Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like
74 | d3cr5x1 |
| not modelled | 7.7 | 19 | Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins
75 | c3ox6C_ |
| not modelled | 7.6 | 15 | PDB header:calcium binding protein Chain: C: PDB Molecule:calcium-binding protein 1; PDBTitle: crystal structure of the calcium sensor calcium-binding protein 12 (cabp1)
76 | d1j3ea_ |
| not modelled | 7.6 | 24 | Fold:Replication modulator SeqA, C-terminal DNA-binding domain Superfamily:Replication modulator SeqA, C-terminal DNA-binding domain Family:Replication modulator SeqA, C-terminal DNA-binding domain
77 | d1psra_ |
| not modelled | 7.5 | 17 | Fold:EF Hand-like Superfamily:EF-hand Family:S100 proteins
78 | c3fs7D_ |
| not modelled | 7.4 | 15 | PDB header:metal binding protein Chain: D: PDB Molecule:parvalbumin, thymic; PDBTitle: crystal structure of gallus gallus beta-parvalbumin (avian2 thymic hormone)
79 | c3cnyA_ |
| not modelled | 7.4 | 17 | PDB header:biosynthetic protein Chain: A: PDB Molecule:inositol catabolism protein iole; PDBTitle: crystal structure of a putative inositol catabolism protein iole2 (iole, lp_3607) from lactobacillus plantarum wcfs1 at 1.85 a3 resolution
80 | d1qx2a_ |
| not modelled | 7.4 | 13 | Fold:EF Hand-like Superfamily:EF-hand Family:Calbindin D9K
81 | c2amiA_ |
| not modelled | 7.2 | 16 | PDB header:cell cycle Chain: A: PDB Molecule:caltractin; PDBTitle: solution structure of the calcium-loaded n-terminal sensor2 domain of centrin
82 | c2ktgA_ |
| not modelled | 7.2 | 17 | PDB header:ca-binding protein Chain: A: PDB Molecule:calmodulin, putative; PDBTitle: calmodulin like protein from entamoeba histolytica: solution structure2 and calcium binding properties of a partially folded protein
83 | d2obha1 |
| not modelled | 7.2 | 15 | Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like
84 | d1zaca_ |
| not modelled | 7.1 | 16 | Fold:EF Hand-like Superfamily:EF-hand Family:Calmodulin-like
85 | c3lmzA_ |
| not modelled | 7.0 | 9 | PDB header:isomerase Chain: A: PDB Molecule:putative sugar isomerase; PDBTitle: crystal structure of putative sugar isomerase. (yp_001305105.1) from2 parabacteroides distasonis atcc 8503 at 1.44 a resolution
86 | d1q88a_ |
| not modelled | 6.9 | 13 | Fold:39 kda initiator binding protein, IBP39, C-terminal domains Superfamily:39 kda initiator binding protein, IBP39, C-terminal domains Family:39 kda initiator binding protein, IBP39, C-terminal domains
87 | d1ftpa_ |
| not modelled | 6.9 | 7 | Fold:Lipocalins Superfamily:Lipocalins Family:Fatty acid binding protein-like
88 | c2vtgA_ |
| not modelled | 6.9 | 7 | PDB header:metal-binding protein Chain: A: PDB Molecule:ionized calcium-binding adapter molecule 2; PDBTitle: crystal structure of human iba2, trigonal crystal form
89 | d2acya_ |
| not modelled | 6.8 | 10 | Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like
90 | d1m5ya3 |
| not modelled | 6.8 | 9 | Fold:FKBP-like Superfamily:FKBP-like Family:FKBP immunophilin/proline isomerase
91 | c3br8A_ |
| not modelled | 6.8 | 10 | PDB header:hydrolase Chain: A: PDB Molecule:probable acylphosphatase; PDBTitle: crystal structure of acylphosphatase from bacillus subtilis
92 | c3ngfA_ |
| not modelled | 6.7 | 18 | PDB header:isomerase Chain: A: PDB Molecule:ap endonuclease, family 2; PDBTitle: crystal structure of ap endonuclease, family 2 from brucella2 melitensis
93 | c2kdhA_ |
| not modelled | 6.6 | 11 | PDB header:structural protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: the solution structure of human cardiac troponin c in2 complex with the green tea polyphenol; (-)-3 epigallocatechin-3-gallate
94 | d1w2ia_ |
| not modelled | 6.6 | 21 | Fold:Ferredoxin-like Superfamily:Acylphosphatase/BLUF domain-like Family:Acylphosphatase-like
95 | d5pala_ |
| not modelled | 6.5 | 15 | Fold:EF Hand-like Superfamily:EF-hand Family:Parvalbumin
96 | c1yw5A_ |
| not modelled | 6.5 | 8 | PDB header:isomerase Chain: A: PDB Molecule:peptidyl prolyl cis/trans isomerase; PDBTitle: peptidyl-prolyl isomerase ess1 from candida albicans
97 | c2dk6A_ |
| not modelled | 6.5 | 24 | PDB header:signaling protein Chain: A: PDB Molecule:parp11 protein; PDBTitle: solution structure of wwe domain in poly (adp-ribose)2 polymerase family, member 11 (parp 11)
98 | c3cu2A_ |
| not modelled | 6.4 | 12 | PDB header:isomerase Chain: A: PDB Molecule:ribulose-5-phosphate 3-epimerase; PDBTitle: crystal structure of ribulose-5-phosphate 3-epimerase (yp_718263.1)2 from haemophilus somnus 129pt at 1.91 a resolution
99 | c1ozsA_ |
| not modelled | 6.4 | 9 | PDB header:structural protein Chain: A: PDB Molecule:troponin c, slow skeletal and cardiac muscles; PDBTitle: c-domain of human cardiac troponin c in complex with the2 inhibitory region of human cardiac troponin i

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0