BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (373 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q9EYH5 HypD-like protein n=24 Tax=Bacteria RepID=Q9EYH5... 429 e-119 UniRef50_Q0RN44 Hydrogenase expression/formation protein n=74 Ta... 352 9e-96 UniRef50_P31903 Hydrogenase expression/formation protein hypD n=... 344 3e-93 UniRef50_Q2SQT0 Hydrogenase expression/formation protein HypD n=... 339 1e-91 UniRef50_B7B8S5 Putative uncharacterized protein n=1 Tax=Parabac... 338 1e-91 UniRef50_C4KD97 Hydrogenase expression/formation protein HypD n=... 333 4e-90 UniRef50_Q31DZ2 Hydrogenase expression/formation protein hypD n=... 333 5e-90 UniRef50_Q1LNV9 Hydrogenase expression/formation protein HypD n=... 330 4e-89 UniRef50_B8I6F4 Hydrogenase expression/formation protein HypD n=... 323 5e-87 UniRef50_B8FG27 Hydrogenase expression/formation protein HypD n=... 318 2e-85 UniRef50_Q1NML6 Hydrogenase formation HypD protein n=4 Tax=Prote... 315 1e-84 UniRef50_B8FQW4 Hydrogenase expression/formation protein HypD n=... 315 2e-84 UniRef50_D1PPE6 Hydrogenase expression/formation protein HypD n=... 315 2e-84 UniRef50_A5FPQ9 Hydrogenase expression/formation protein HypD n=... 311 3e-83 UniRef50_A9Y8W2 Hydrogenase formation HypD protein n=3 Tax=Desul... 311 3e-83 UniRef50_C6QQX3 Hydrogenase formation HypD protein n=2 Tax=Bacil... 301 3e-80 UniRef50_D1Y5N2 Hydrogenase expression/formation protein HypD n=... 295 1e-78 UniRef50_B0TCN3 Hydrogenase expression/formation protein hypd n=... 293 5e-78 UniRef50_A6LXR6 Hydrogenase formation HypD protein n=9 Tax=Clost... 292 1e-77 UniRef50_B2TM77 Hydrogenase isoenzymes formation protein HypD n=... 290 5e-77 UniRef50_C1TK22 Hydrogenase expression/formation protein HypD n=... 289 1e-76 UniRef50_Q2RGH3 Hydrogenase expression/formation protein HypD n=... 289 1e-76 UniRef50_C6PPY9 Hydrogenase formation HypD protein n=6 Tax=Clost... 288 2e-76 UniRef50_B2KBC4 Hydrogenase formation HypD protein n=1 Tax=Elusi... 287 4e-76 UniRef50_C8WJD4 Hydrogenase expression/formation protein HypD n=... 284 4e-75 UniRef50_B8D1S3 Hydrogenase formation HypD protein n=1 Tax=Halot... 282 1e-74 UniRef50_B5YB75 Hydrogenase expression/formation protein HypD n=... 280 6e-74 UniRef50_Q58400 Putative hydrogenase expression/formation protei... 280 8e-74 UniRef50_C5RHD4 Hydrogenase formation HypD protein n=1 Tax=Clost... 278 2e-73 UniRef50_D1BLR9 Hydrogenase formation HypD protein n=5 Tax=Veill... 278 2e-73 UniRef50_Q46BF2 Hydrogenase expression/formation protein n=8 Tax... 275 2e-72 UniRef50_C1SHT6 Hydrogenase maturation factor n=1 Tax=Denitrovib... 271 3e-71 UniRef50_Q3ABW4 Hydrogenase expression/formation protein HypD n=... 269 1e-70 UniRef50_O28901 Hydrogenase expression/formation protein (HypD) ... 267 5e-70 UniRef50_Q5H7P6 Hydrogenase expression/formation protein HypD n=... 264 5e-69 UniRef50_B5Y919 Hydrogenase expression/formation protein HypD n=... 262 1e-68 UniRef50_A5ULS2 Hydrogenase expression/formation protein, HypD n... 262 2e-68 UniRef50_A3DJT1 Hydrogenase formation HypD protein n=4 Tax=Clost... 261 3e-68 UniRef50_Q0W4N4 Hydrogenase expression/formation protein (Matura... 261 4e-68 UniRef50_C9KK61 Hydrogenase expression/formation protein HypD n=... 258 3e-67 UniRef50_C5CEU3 Hydrogenase formation HypD protein n=1 Tax=Kosmo... 256 1e-66 UniRef50_C5A3E4 [NiFe] hydrogenase maturation protein (HypD) n=4... 254 5e-66 UniRef50_B1L5X9 Hydrogenase maturation factor n=4 Tax=Archaea Re... 251 2e-65 UniRef50_A1SU74 Hydrogenase formation HypD protein n=1 Tax=Psych... 250 7e-65 UniRef50_C9LR02 Hydrogenase expression/formation protein HypD n=... 243 8e-63 UniRef50_A4YFA0 Hydrogenase formation HypD protein n=1 Tax=Metal... 238 3e-61 UniRef50_A4XJQ2 Hydrogenase formation HypD protein n=1 Tax=Caldi... 234 4e-60 UniRef50_B9MR89 Hydrogenase formation HypD protein n=1 Tax=Anaer... 233 7e-60 UniRef50_Q2Y8F6 Hydrogenase formation HypD protein n=8 Tax=Prote... 233 1e-59 UniRef50_UPI00019137D4 hydrogenase expression/formation protein ... 229 1e-58 UniRef50_A7H7N4 Hydrogenase formation HypD protein n=5 Tax=cellu... 228 3e-58 UniRef50_Q8TYR6 Hydrogenase maturation factor n=1 Tax=Methanopyr... 217 5e-55 UniRef50_Q8NKV0 Membrane-bound NiFe hydrogenase n=1 Tax=Acidianu... 217 6e-55 UniRef50_Q6API1 Related to hydrogenase isoenzymes formation prot... 211 2e-53 UniRef50_B4S326 Hydrogenase formation HypD protein n=1 Tax=Alter... 211 2e-53 UniRef50_A1S0N0 Hydrogenase formation HypD protein n=6 Tax=Therm... 210 8e-53 UniRef50_A0L606 Hydrogenase formation HypD protein n=1 Tax=Magne... 169 2e-40 UniRef50_B9Y0D1 Putative uncharacterized protein n=1 Tax=Helicob... 151 3e-35 UniRef50_Q9REL6 Hydrogenase maturating protein HypD (Fragment) n... 141 3e-32 UniRef50_UPI000190C3BE hydrogenase expression/formation protein ... 83 2e-14 UniRef50_Q1AUA4 Hydrogenase maturation factor-like protein n=1 T... 62 2e-08 UniRef50_UPI0001699500 Hydrogenase formation HypD protein n=1 Ta... 62 3e-08 UniRef50_Q111Q4 Hydrogenase isoenzyme formation protein HypD n=1... 50 1e-04 UniRef50_Q111Q5 Hydrogenase formation HypD protein n=1 Tax=Trich... 43 0.019 >UniRef50_Q9EYH5 HypD-like protein n=24 Tax=Bacteria RepID=Q9EYH5_NOSP7 Length = 392 Score = 429 bits (1104), Expect = e-119, Method: Compositional matrix adjust. Identities = 193/366 (52%), Positives = 267/366 (72%), Gaps = 4/366 (1%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M++VDE+R PE+ E L + LS+ E+P++IMEVCGGHTH+IFK+G++++LP+ Sbjct: 1 MKYVDEFREPEKA----EALCREITKLSHQLEKPIKIMEVCGGHTHSIFKYGIEEILPQT 56 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 +E IHGPGCPVCV+P GR+D + I+ + VIF TFGDAMRVPG + SLLQA+A+GAD+R Sbjct: 57 IELIHGPGCPVCVMPKGRLDDAIAISQNHNVIFATFGDAMRVPGSKTSLLQARAQGADIR 116 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 +VYSP+D+L++A+++P R+VVFF LGFETT P+T T+ QA A ++ NF F H+ +IP Sbjct: 117 MVYSPLDSLQIAKDHPDREVVFFALGFETTAPSTGFTIVQAAAEEIHNFSMFSNHVLVIP 176 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 L++LL+ PD +D F+ PGHVSMVIG+D Y FI+ +++P+VV+GFEPLD+LQ + ML+ Sbjct: 177 ALKALLDNPDLQLDGFVGPGHVSMVIGSDPYQFISQQYNKPIVVSGFEPLDILQSIWMLL 236 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 QQ + +VENQY R+V +GN +A QAI VF V +WRGLG I SG+ + P+Y Sbjct: 237 QQIVENRCEVENQYNRIVQKSGNTVALQAINKVFAVRDSFDWRGLGDIPYSGLKIKPEYA 296 Query: 301 RFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGAC 360 +FDAE F +V D +CGE+L G KP +C +FG C P+T G MVSSEGAC Sbjct: 297 QFDAELKFTIPNLKVADHKACKCGEILKGVLKPWECKVFGTACTPETPIGTCMVSSEGAC 356 Query: 361 AAWYQY 366 AA+Y+Y Sbjct: 357 AAYYKY 362 >UniRef50_Q0RN44 Hydrogenase expression/formation protein n=74 Tax=Bacteria RepID=Q0RN44_FRAAA Length = 407 Score = 352 bits (904), Expect = 9e-96, Method: Compositional matrix adjust. Identities = 176/368 (47%), Positives = 231/368 (62%), Gaps = 8/368 (2%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M++++E+ P +L++ + RP IMEVCGG TH++ + G+DQLLP Sbjct: 1 MKYLEEFSDPALAGRLLDQIHA-------VTTRPWAIMEVCGGQTHSLIRHGIDQLLPAG 53 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 VE IHGPGCPVCV P+ ID +EIAS P VIFC+FGD +RVPG L + K+ GADVR Sbjct: 54 VEMIHGPGCPVCVTPLEIIDRALEIASRPGVIFCSFGDMLRVPGSGRDLFRVKSTGADVR 113 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 +VYSP+DAL +A+ NP R+VVFFG+GFETT P A+T+ QAK V+NF H+ + P Sbjct: 114 VVYSPLDALTIARRNPDRQVVFFGIGFETTAPANAMTVYQAKRCGVRNFSLLVSHVLVPP 173 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 + +++E P + FLA GHV V+GT Y +A + P+VV GFEPLDLL+G+ V Sbjct: 174 AMAAIMESPSCRVQGFLAAGHVCSVMGTGQYPELARRYQVPIVVTGFEPLDLLEGIRRTV 233 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 Q +++N Y R VP AGN A + DVF V D WRG+GVI SG L+ Y Sbjct: 234 TQLEEGRHELDNAYPRAVPAAGNPAAIAMLRDVFTVT-DRAWRGIGVIPDSGWRLSAAYA 292 Query: 301 RFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGAC 360 +FDAE F + R GEVL G KPH+C FG+ C P+T GA MVS+EGAC Sbjct: 293 QFDAETRFAVRDIHTEESSVCRSGEVLQGLIKPHECAAFGHRCTPRTPLGATMVSAEGAC 352 Query: 361 AAWYQYRQ 368 AA+Y YR+ Sbjct: 353 AAYYLYRR 360 >UniRef50_P31903 Hydrogenase expression/formation protein hypD n=249 Tax=Bacteria RepID=HYPD_RALEH Length = 379 Score = 344 bits (883), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 174/376 (46%), Positives = 237/376 (63%), Gaps = 18/376 (4%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERP---LRIMEVCGGHTHAIFKFGLDQLL 57 M++++E+R E ++ H+R A RP ME CGGHTHAI ++G+ +LL Sbjct: 1 MKYIEEFRDGELAQRIAAHVRAEA--------RPGQRYNFMEFCGGHTHAISRYGVTELL 52 Query: 58 PENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQG-SLLQAKARG 116 PENV IHGPGCPVCVLP+GRID + +A + I CT+GD MRVP G SL++AKA G Sbjct: 53 PENVRMIHGPGCPVCVLPIGRIDLALHLALERDAIVCTYGDTMRVPASGGMSLIRAKAHG 112 Query: 117 ADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHI 176 AD+R+VYS DALK+AQ +P R+VVF +GFETT P TA+ +++AKAR V NF C H+ Sbjct: 113 ADIRMVYSAADALKIAQRHPQREVVFLAIGFETTTPPTALIIREAKARQVDNFSVLCCHV 172 Query: 177 TLIPTLRSLLEQP---DNG---IDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPL 230 + +LE P D G ID F+ P HVS+VIGT Y + ++ +P+V+AGFEPL Sbjct: 173 LTPSAITHILESPEVRDYGTVPIDGFVGPAHVSIVIGTRPYEHFSREYGKPVVIAGFEPL 232 Query: 231 DLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIES 290 D++Q ++MLV+Q + ++VEN++ R V GN AQ +++VF + EWRGLG + Sbjct: 233 DVMQAILMLVRQVNSGRAEVENEFVRAVTRDGNESAQAMVSEVFELRPSFEWRGLGEVPY 292 Query: 291 SGVHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFG 350 S + + + RFDAE F + V D+ CG +L G KP C LF C P+ G Sbjct: 293 SALRIRAQFARFDAEQRFDLRYRPVPDNKACECGAILRGVKKPTDCKLFATVCTPENPMG 352 Query: 351 ALMVSSEGACAAWYQY 366 + MVSSEGACAA Y Y Sbjct: 353 SCMVSSEGACAAHYSY 368 >UniRef50_Q2SQT0 Hydrogenase expression/formation protein HypD n=6 Tax=Bacteria RepID=Q2SQT0_HAHCH Length = 370 Score = 339 bits (869), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 164/371 (44%), Positives = 227/371 (61%), Gaps = 10/371 (2%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M+++DE+R + ++ + H ER R ME CGGHTH +F++G+ LLP N Sbjct: 1 MKYIDEFRNGDYAAEVARRI-----HAEADPERRYRFMEFCGGHTHTLFRYGIPDLLPAN 55 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGK-QGSLLQAKARGADV 119 V+ IHGPGCPVCVLPM RID +E+A +V+ C++GD +RVPG + SL +AK++GADV Sbjct: 56 VKMIHGPGCPVCVLPMARIDAAIELAVRHQVVLCSYGDMLRVPGAHRTSLQKAKSQGADV 115 Query: 120 RIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLI 179 R++YSP DAL++A ENP R+VVFF +GFETT P TA L +A+ ++NF FC H+ Sbjct: 116 RMLYSPADALRIALENPQRQVVFFAIGFETTTPPTAAVLLKAQELKLRNFSVFCNHVLTP 175 Query: 180 PTLRSLLEQPDNG----IDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQG 235 P + +LE I+ + PGHVS++ G AY+ +A + P+V+AGFEPLD+L Sbjct: 176 PAITGILEPAQQAGERIIEGLVGPGHVSVITGGGAYDSLARRYRTPIVIAGFEPLDILHS 235 Query: 236 VVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHL 295 +++LV+Q A VENQY R V +GN AQ A + EWRGLG + S + + Sbjct: 236 ILLLVRQCNAGRYDVENQYSRAVTASGNAKAQSMAARTMTLRDSFEWRGLGWMPHSALRI 295 Query: 296 TPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVS 355 P++ +DAE F +P + ++ C VL G P C LF C P GA MVS Sbjct: 296 RPEFADYDAERRFELSPSEARENKACECPAVLRGAKAPTDCKLFATVCTPDNPIGACMVS 355 Query: 356 SEGACAAWYQY 366 SEGACAA Y Y Sbjct: 356 SEGACAAHYSY 366 >UniRef50_B7B8S5 Putative uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7B8S5_9PORP Length = 370 Score = 338 bits (868), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 169/378 (44%), Positives = 232/378 (61%), Gaps = 19/378 (5%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 MRFVDEYR EQV L+ +R+ RP IME+CGG TH I ++ L+++LPE Sbjct: 1 MRFVDEYRDKEQVRSLVRAIRQ-------VVTRPWHIMEICGGQTHTIARYRLEEMLPEE 53 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 V+ +HGPGCPVCV P+G ID +E+A P+VI +FGD MRVPG + LLQ KARGAD+R Sbjct: 54 VKLLHGPGCPVCVTPVGIIDRALELAKRPDVILASFGDMMRVPGSREDLLQIKARGADIR 113 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 I+YSP+DA+ LA ++P +K+VFF +GFETT P + L++A R ++NFY T+ P Sbjct: 114 ILYSPLDAVSLAADHPDKKIVFFAIGFETTAPVHMMALKEAARRKLENFYLHTSLFTVPP 173 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 + ++L P++ +D FLA GHV + G AY +A + P+VV GFEP DLL G+ + Sbjct: 174 AIEAILSDPESRVDGFLAAGHVCAITGNGAYRHLAEKYKTPIVVTGFEPADLLLGIYCCL 233 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 Q A KVEN Y+RVVP+ GNL A+ + + + D EWRGLG I SG+ L + Sbjct: 234 LQLEAGIYKVENVYKRVVPEEGNLPARALMEETLELC-DQEWRGLGTIPQSGLRLKEIFA 292 Query: 301 R---------FDAEAHFRPAPQQVCDDPRARC--GEVLTGKCKPHQCPLFGNTCNPQTAF 349 R DA+AH + + +C G+++ G + CP FG C P Sbjct: 293 RQDASHLLPALDAKAHKQCLEATSSGVEKGQCIAGDIMRGTKQTKDCPFFGTLCTPDHPV 352 Query: 350 GALMVSSEGACAAWYQYR 367 GA MVSSEG CAA+Y+Y+ Sbjct: 353 GAPMVSSEGVCAAYYRYK 370 >UniRef50_C4KD97 Hydrogenase expression/formation protein HypD n=2 Tax=Betaproteobacteria RepID=C4KD97_THASP Length = 393 Score = 333 bits (855), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 171/374 (45%), Positives = 229/374 (61%), Gaps = 13/374 (3%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M++VDE+R L A R ME CGGHTHAI ++G+ LLP N Sbjct: 1 MKYVDEFRDGALAAGLAR-----ALAREVDPGRDYAFMEFCGGHTHAISRYGVADLLPPN 55 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIA-SHPEVIFCTFGDAMRVPGKQG-SLLQAKARGAD 118 V IHGPGCPVCVLP+GR+D + +A + PEVI C++GD +RVP G SLL+AKARGAD Sbjct: 56 VRMIHGPGCPVCVLPIGRVDMAIGLALARPEVILCSYGDCLRVPASDGLSLLKAKARGAD 115 Query: 119 VRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITL 178 VR+VYS DAL LA P R+VVFF +GFETT P TA+ L++A R + NF C H+ Sbjct: 116 VRMVYSAADALALAVREPAREVVFFAIGFETTTPPTALVLREAATRRLANFSVICNHVLT 175 Query: 179 IPTLRSLLEQPDNG------IDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDL 232 P + ++L+ P +D F+ P HVS +IG+ Y A+ + +P+V+AGFEPLD+ Sbjct: 176 PPAITAILDSPAASRLGALHLDGFIGPAHVSTLIGSRPYEAFAARYRKPVVIAGFEPLDV 235 Query: 233 LQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSG 292 +Q + MLV+Q ++VEN++ R V GN AQ +++V + + EWRGLGV+ S Sbjct: 236 MQAIRMLVRQVDTGRAEVENEFTRAVVRDGNPKAQAIVSEVLALRDEFEWRGLGVLARSA 295 Query: 293 VHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGAL 352 + + P + +DAEA F + V D CG +L G KP C LFG C P+T G+ Sbjct: 296 LRIRPAFAPWDAEAKFGLDYRPVPDHRACECGAILRGVKKPTDCKLFGTVCTPETPMGSC 355 Query: 353 MVSSEGACAAWYQY 366 MVSSEGACAA Y Y Sbjct: 356 MVSSEGACAAHYNY 369 >UniRef50_Q31DZ2 Hydrogenase expression/formation protein hypD n=79 Tax=Bacteria RepID=Q31DZ2_THICR Length = 388 Score = 333 bits (855), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 160/362 (44%), Positives = 224/362 (61%), Gaps = 6/362 (1%) Query: 7 YRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHG 66 +R P+ + L + + + A LS PLRIMEVCGGHTH I K+GL+Q LPEN+EFIHG Sbjct: 13 FRQPKTIQALAQKIHQTAQTLS----SPLRIMEVCGGHTHTIMKYGLNQQLPENIEFIHG 68 Query: 67 PGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPM 126 PGCPVC++P RID + +A P I T GD +RVPG + SL + +A G+D+R +YSP+ Sbjct: 69 PGCPVCIMPKERIDHAIALAQMPNTILLTLGDMIRVPGSKTSLAKQRALGSDIRALYSPL 128 Query: 127 DALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLL 186 DAL +AQENP ++VVFF +GFETT P T +QQA + N +F H+ + P + ++L Sbjct: 129 DALTIAQENPDKQVVFFAIGFETTTPMTTAVIQQALVLKLPNLFFHINHVLVPPAVAAIL 188 Query: 187 EQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAA 246 D I+A + P HVS++ G Y +A+ P+VV+GFEP+D++Q ++M+V+Q + Sbjct: 189 SDKDCQINALIGPSHVSVISGAQIYQPLAAQHRIPIVVSGFEPVDVMQSILMIVEQMLQK 248 Query: 247 HSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEA 306 +VE QY R V + GN AQQ I WRGLG I S + L Y+ DAE Sbjct: 249 RHQVEIQYSRAVTEQGNQKAQQMIETYLEPRSHFRWRGLGDIPLSALQLKDAYRFLDAET 308 Query: 307 HFRP--APQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWY 364 F+ + + + D CG++L G KP C +FG C+P G+ MVSSEGAC A+Y Sbjct: 309 VFKSVLSDEPIDDHKLCICGDILKGVAKPQDCKVFGRGCDPARPLGSCMVSSEGACNAYY 368 Query: 365 QY 366 +Y Sbjct: 369 RY 370 >UniRef50_Q1LNV9 Hydrogenase expression/formation protein HypD n=5 Tax=Bacteria RepID=Q1LNV9_RALME Length = 387 Score = 330 bits (847), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 167/373 (44%), Positives = 231/373 (61%), Gaps = 12/373 (3%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M+F+DE+R E Q+ E + H ++R ME CGGHTHAI ++G+ +LLP N Sbjct: 1 MKFIDEFRDGELAKQIGERI-----HAEARSDRAYSFMEFCGGHTHAISRYGVLELLPSN 55 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQG-SLLQAKARGADV 119 V +HGPGCPVCVLP+GRID + +A + I CT+GD MRVP SL++AKARG D+ Sbjct: 56 VRMVHGPGCPVCVLPIGRIDLAIRLALERDAIVCTYGDTMRVPASDSLSLMKAKARGGDI 115 Query: 120 RIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLI 179 R+VYS DAL +A+ NP R+VVFF +GFETT P TA+ ++ A+ + NF C H+ Sbjct: 116 RMVYSAADALAIARANPQREVVFFAIGFETTTPPTALAIRDAQREGLSNFSVLCCHVLTP 175 Query: 180 PTLRSLLEQPDNG------IDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLL 233 + +LE P+ ID F+ P HVS+VIG+ Y A ++ +P+V+AGFEPLD++ Sbjct: 176 SAITHILESPEVRQFGTVPIDGFVGPAHVSIVIGSQPYEHFAEEYRKPVVIAGFEPLDVM 235 Query: 234 QGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGV 293 Q ++MLV+Q + VEN++ R V GNL AQ +++VF + EWRGLG + S + Sbjct: 236 QAILMLVRQVNRGAAHVENEFTRAVTPEGNLRAQALVSEVFELRPSFEWRGLGEVPYSAL 295 Query: 294 HLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALM 353 + + FDAE F A Q V D+ CG +L G +P C +FG C P+ G+ M Sbjct: 296 KIREAFAAFDAERRFDLAYQSVPDNKACECGAILRGVKRPTDCKIFGTVCTPENPVGSCM 355 Query: 354 VSSEGACAAWYQY 366 VSSEGACAA Y Y Sbjct: 356 VSSEGACAAHYTY 368 >UniRef50_B8I6F4 Hydrogenase expression/formation protein HypD n=4 Tax=Clostridium RepID=B8I6F4_CLOCE Length = 361 Score = 323 bits (829), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 155/365 (42%), Positives = 230/365 (63%), Gaps = 8/365 (2%) Query: 2 RFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENV 61 ++D++R E + ++++ L+ Y+ + L+IMEVCG HT AI ++GL LLP + Sbjct: 3 NYIDDFRDSEVISRIVQSLQ------GYSGPK-LKIMEVCGTHTMAISRYGLRSLLPRQI 55 Query: 62 EFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRI 121 E + GPGCPVCV P ID+ E+A VI TFGD MRVPG +LL KA+G++V++ Sbjct: 56 ELVSGPGCPVCVTPTSYIDSATELADSKNVIITTFGDMMRVPGNNSTLLHKKAQGSNVQM 115 Query: 122 VYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPT 181 VYSP++A++LA+ NP ++VVF +GFETT P A+++ +AK+ ++N+ + T+ Sbjct: 116 VYSPLNAVELARNNPDKEVVFLSVGFETTTPVIALSVLKAKSEGIKNYSVLTANKTMPEA 175 Query: 182 LRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQ 241 +++L + + ID FL PGHVS +IGTD ++++A + + VVAGFEPLD+L + +LV Sbjct: 176 IKALADDKELQIDGFLYPGHVSAIIGTDFFSYVAYNMEKAGVVAGFEPLDILYSIKVLVD 235 Query: 242 QKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQR 301 EN Y R+V GN+ AQQ + +VF D WRG+G+I SG+ L DY++ Sbjct: 236 NIANGSIVFENMYSRIVAREGNIKAQQKMYEVF-EPVDVVWRGIGMIPRSGLGLVKDYEQ 294 Query: 302 FDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACA 361 FDA F + + + CGEVL GK +P C LF C P+T G+ MVSSEG CA Sbjct: 295 FDAAKKFDIKSKDIPEPKGCLCGEVLKGKKRPGDCKLFKKRCTPETPVGSCMVSSEGTCA 354 Query: 362 AWYQY 366 A+Y+Y Sbjct: 355 AYYKY 359 >UniRef50_B8FG27 Hydrogenase expression/formation protein HypD n=4 Tax=Deltaproteobacteria RepID=B8FG27_DESAA Length = 367 Score = 318 bits (814), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 160/363 (44%), Positives = 219/363 (60%), Gaps = 9/363 (2%) Query: 4 VDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEF 63 +D +R PE L + ++ + + P+RIMEVCG HT +IF+ G+ +LPE++ Sbjct: 6 LDSFRDPEVAKTL-------SGLIAESCQSPMRIMEVCGTHTVSIFRNGIRDMLPEDITL 58 Query: 64 IHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVY 123 + GPGCPVCV ID +++A VI TFGD MRVPG Q SL + +A+G V++VY Sbjct: 59 VSGPGCPVCVTDQKEIDDFIQLARKKNVILATFGDLMRVPGTQSSLQKQRAQGRKVKVVY 118 Query: 124 SPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLR 183 S DAL LA +NP +K+VF G+GFETT PT + +A + ++NF+ + H T+ P L Sbjct: 119 SAFDALTLAAQNPKKKIVFCGVGFETTAPTVGACILEADRQGLKNFFIYSAHKTVPPALD 178 Query: 184 SLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQK 243 +L+ D ID F+ PGHVS++IG DAY + F P +AGFEP D+L ++ LVQQK Sbjct: 179 ALMSM-DTVIDGFMMPGHVSVIIGADAYLPLVEKFSIPCAIAGFEPNDILASILTLVQQK 237 Query: 244 IAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFD 303 A SK+EN Y R V GN A++ + VF D+ WRGLGVI SG+ + +Y+RFD Sbjct: 238 EAGESKLENTYSRAVSPIGNKKAREVMEQVF-DRVDASWRGLGVIPGSGLSIREEYERFD 296 Query: 304 AEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAW 363 A F P + CG +LTGK P QCP + C P G MVSSEG CAA+ Sbjct: 297 ASKAFELPPARSAAPKGCICGAILTGKKIPPQCPKYKIECTPTDPLGPCMVSSEGTCAAY 356 Query: 364 YQY 366 Y+Y Sbjct: 357 YRY 359 >UniRef50_Q1NML6 Hydrogenase formation HypD protein n=4 Tax=Proteobacteria RepID=Q1NML6_9DELT Length = 408 Score = 315 bits (808), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 177/415 (42%), Positives = 235/415 (56%), Gaps = 52/415 (12%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M+F+DEYR P +L+ + ++ T RP IME+CGGHTHAI + G+DQLLP Sbjct: 1 MKFIDEYRDPALARELL-------AGIAATVSRPWVIMEICGGHTHAIIRHGIDQLLPAE 53 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQG------------- 107 +E +HGPGCPVCV P ID + +A PEVIF +FGD +RVPG + Sbjct: 54 IELVHGPGCPVCVTPASLIDQAIALAGRPEVIFTSFGDMLRVPGSRAENGDTIPIFHTAK 113 Query: 108 ------------------SLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFET 149 SL QA+A GADVR+VYSP++A++LA++ P R+VVFF +GFET Sbjct: 114 GGKRDTAAMKNRYGVPVFSLQQARAAGADVRMVYSPLEAVELARQQPHRQVVFFAVGFET 173 Query: 150 TMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTD 209 T P A+ + QA + NF H+ + P + +LL PDN + FLA GHV V G Sbjct: 174 TAPGNAMAVLQAARLGLANFSLLVSHVLVPPAIAALLAAPDNRVQGFLAAGHVCTVTGWQ 233 Query: 210 AYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQA 269 Y + + P+V AGFEP+D+L ++MLV+Q A ++VENQYRR V GN AQ A Sbjct: 234 EYQPLVERYRVPMVPAGFEPVDILAAILMLVRQLEAGRAEVENQYRRAVRRQGNPAAQAA 293 Query: 270 IADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHF-----------RPAPQQVCDD 318 + +VF V D EWRGLG I SG+ L P + FDA A AP+Q D Sbjct: 294 VEEVFMVV-DQEWRGLGPIPRSGLQLRPQFAAFDAAAKLGPEPAPAAQTAPAAPEQAADA 352 Query: 319 PRARC--GEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQES 371 C G +L G KP QCP F C+P+ GA MVS EGAC A+Y+ ++ + Sbjct: 353 GANPCISGAILRGIKKPLQCPAFAGACHPENPLGATMVSREGACHAYYRANRRAA 407 >UniRef50_B8FQW4 Hydrogenase expression/formation protein HypD n=7 Tax=Bacteria RepID=B8FQW4_DESHD Length = 367 Score = 315 bits (807), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 157/370 (42%), Positives = 229/370 (61%), Gaps = 12/370 (3%) Query: 4 VDEYRAPEQVMQL----IEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPE 59 V+ Y + + V ++ ++ +RE A+ P +MEVCG HT AI K L LLP Sbjct: 3 VNNYNSKQSVKEVAAGYLKEIRELAAA-------PYTVMEVCGTHTVAIAKNALRDLLPA 55 Query: 60 NVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADV 119 + + GPGCPVCV ID + +A+ P VI TFGD +RVPG Q SL + GAD+ Sbjct: 56 QIRLVSGPGCPVCVTDSSDIDQFLYLAAQPHVITATFGDMIRVPGSQKSLQMLRGEGADI 115 Query: 120 RIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLI 179 RIVYS +DAL LA++NP ++VVF G+GFETT+PT ++++QA+ D++N+ H + Sbjct: 116 RIVYSTLDALDLARKNPDKEVVFLGVGFETTVPTVCVSIEQAQKEDIRNYSILSMHKLVP 175 Query: 180 PTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVML 239 P LR+L E P+ +D FL PGH +IG++A F+A D+ P VV GFE LD+L+G+VML Sbjct: 176 PVLRALAEDPETEVDGFLDPGHACAIIGSEALAFMAEDYAMPGVVTGFEALDILEGLVML 235 Query: 240 VQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDY 299 ++Q+ +++E QY ++V GN +AQ I +F D+ +RGLG+I G+ + +Y Sbjct: 236 LRQRDQGRAEIEIQYDKIVKPEGNRVAQALIHKIF-EPVDAAFRGLGIIPLGGLGVRKEY 294 Query: 300 QRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGA 359 + +DA F + + P RCG VL G+ P +CPLF C P + G MVSSEG+ Sbjct: 295 EDWDAAKKFALPEFETVEIPGCRCGNVLKGQITPPECPLFARKCTPLSPVGPCMVSSEGS 354 Query: 360 CAAWYQYRQQ 369 CAA+Y+Y Q+ Sbjct: 355 CAAYYRYAQR 364 >UniRef50_D1PPE6 Hydrogenase expression/formation protein HypD n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPE6_9FIRM Length = 371 Score = 315 bits (806), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 169/371 (45%), Positives = 223/371 (60%), Gaps = 8/371 (2%) Query: 3 FVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVE 62 +++ +R P L++ +R R H P+RIME+CG HT AI K GL LL VE Sbjct: 7 WLNAFRHPAGAADLVQDIRRRIEH-----HAPVRIMEICGTHTMAIAKAGLRSLLAPGVE 61 Query: 63 FIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPG--KQGSLLQAKARGADVR 120 I GPGCPVCV P G +D +E++ P +I T+GD +RVPG + +LL+ +A GADVR Sbjct: 62 LISGPGCPVCVTPAGDMDAALELSGRPGLIVATYGDLLRVPGSVRGDTLLRRRAAGADVR 121 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 VYS DA+ LA+ NP R+VVF G+GFETT P TA + A + NF FC P Sbjct: 122 TVYSAADAVDLARANPDREVVFLGVGFETTTPGTAACVLDAAESGLANFSVFCLLKRTEP 181 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 LR+LL PD G+DA L PGHV+ V G DA+ F+ ++ P VV+GFE D+L V LV Sbjct: 182 ALRALLSAPDCGVDALLCPGHVAAVTGVDAFAFLPREYGLPAVVSGFEAGDVLYSVWRLV 241 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 +EN+Y R+V AGN A+ A VF + DS WRGLG I +SG+ L P+Y Sbjct: 242 CMVCGGTPALENEYSRLVTAAGNTAARAAAEAVF-LPADSLWRGLGEIPASGLALRPEYA 300 Query: 301 RFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGAC 360 RFDA + + ++ + P RCG V+ G P QCPLFG C P+ G MVSSEGAC Sbjct: 301 RFDAAVRYGLSRRRGTEPPGCRCGSVIRGVLPPEQCPLFGKVCRPEDPVGPCMVSSEGAC 360 Query: 361 AAWYQYRQQES 371 AA ++YR ++ Sbjct: 361 AAAWKYRPADA 371 >UniRef50_A5FPQ9 Hydrogenase expression/formation protein HypD n=5 Tax=Dehalococcoides RepID=A5FPQ9_DEHSB Length = 364 Score = 311 bits (797), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 150/367 (40%), Positives = 225/367 (61%), Gaps = 9/367 (2%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M F++E+R + L+E++ +R++ +P R ME CGGHT AIF++G+ QLLP + Sbjct: 1 MNFIEEFRNSQSGRTLLEYINKRST-------KPARFMEFCGGHTVAIFRYGIRQLLPPH 53 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 +E + GPGCPVCV +D + ++ VI C+FGD +RVP + SLL+ +A GADVR Sbjct: 54 IEMLSGPGCPVCVTSTADLDKVIALSRLTGVIICSFGDLLRVPSSRQSLLEVRAEGADVR 113 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 IVYS MDAL++A++NP +KV+F G+GFETT PT A ++ QA+ + + N+Y H P Sbjct: 114 IVYSTMDALEIARQNPAKKVIFVGIGFETTAPTIAASVIQARNQGLDNYYVMSLHKITPP 173 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 +R++L+ + + + PGHVS + G++A+ FI D+H V+GFE LD+L V LV Sbjct: 174 VMRAILDAGETRLSGIICPGHVSSITGSNAWEFIPKDYHLACAVSGFESLDILYCVKSLV 233 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 Q +++ Y R V GNL A + + +VF + + WRG+G++ SG+ L P++ Sbjct: 234 DQVEDKTPRLDVSYSRAVKPEGNLAALKIMDEVFDIC-PANWRGIGILPESGLCLKPEFA 292 Query: 301 RFDAEAHFRPAPQQVC-DDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGA 359 FDAE +F + + P CGE++ G P +C LF C P+ G MVSSEG Sbjct: 293 AFDAEKNFEIKLSEPSRETPGCLCGEIIKGTRTPLECKLFSKVCTPENPVGPCMVSSEGT 352 Query: 360 CAAWYQY 366 CAA+Y Y Sbjct: 353 CAAYYHY 359 >UniRef50_A9Y8W2 Hydrogenase formation HypD protein n=3 Tax=Desulfovibrionaceae RepID=A9Y8W2_DESVM Length = 365 Score = 311 bits (796), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 160/370 (43%), Positives = 222/370 (60%), Gaps = 9/370 (2%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 + F ++ P+ LIE L +RPLR MEVCG HT AIF+ G+ LLP Sbjct: 3 VNFSTAFKDPDLSRGLIERLHR-------ALDRPLRFMEVCGTHTVAIFQSGMRPLLPAG 55 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQ-AKARGADV 119 V + GPGCPVCV + +++A P VI TFGD MRVPG G L+ A+A+GA V Sbjct: 56 VRHLSGPGCPVCVTHESEVAAYLQLAEKPGVIIATFGDLMRVPGPGGDNLKLAQAKGARV 115 Query: 120 RIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLI 179 IVYS DALKLA +NP VVF G+GFETT PT A T+ A+ + + NF H + Sbjct: 116 EIVYSAHDALKLAADNPGDTVVFLGIGFETTAPTVAATVLMARQQGLANFCVLSFHKLVP 175 Query: 180 PTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVML 239 P LR+LL PD +DAFL PGHVS ++G + Y F+A +F P ++AGF+P+D+LQ ++++ Sbjct: 176 PALRALLADPDCAVDAFLLPGHVSTILGMEPYRFVADEFRTPGIIAGFDPVDILQALLIM 235 Query: 240 VQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDY 299 V+Q+ + N YRR V DAGN A++ + VF D+ WRG+G I SG+ P++ Sbjct: 236 VEQRKTGEFAIVNSYRRAVDDAGNPRAREILDTVF-QTADALWRGIGCIPGSGLVFRPEF 294 Query: 300 QRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGA 359 +++DA A + +CG+VL GK +P CPLF C P G MVS+EG+ Sbjct: 295 EQYDAMARLGLTLPEARPIAGCKCGDVLKGKMQPCDCPLFAKACTPAKPVGPCMVSTEGS 354 Query: 360 CAAWYQYRQQ 369 CAA+++Y + Sbjct: 355 CAAYFKYNVE 364 >UniRef50_C6QQX3 Hydrogenase formation HypD protein n=2 Tax=Bacillaceae RepID=C6QQX3_9BACI Length = 369 Score = 301 bits (771), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 149/368 (40%), Positives = 225/368 (61%), Gaps = 2/368 (0%) Query: 3 FVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVE 62 +D Y + + L++ ++E A +R MEVCG HT A+ + G+ + L +++ Sbjct: 4 LIDPYTSSKLSRALLDEVKELAKQFQKEFQRIPAFMEVCGSHTMALARTGVKKALQDDIR 63 Query: 63 FIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIV 122 I GPGCPVCV ID + + + + I CTFGD MRVPG G+L+QAK G D+R+V Sbjct: 64 LISGPGCPVCVTDQAAIDAMISLTAGSDRIICTFGDMMRVPGSYGTLMQAKTEGKDIRVV 123 Query: 123 YSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTL 182 YSP+DA+++A++NP ++V+F G+GFETT+PT A L++A+ +V NF + P L Sbjct: 124 YSPVDAVRIAEQNPQKEVIFLGIGFETTIPTLAAALKEAEENEVDNFSIWMAAKLTEPIL 183 Query: 183 RSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQ 242 R LL + +D FL PGHVSMV+G + F+A+++H P V++GFE ++LL + L+ Sbjct: 184 RHLLNNKEVALDGFLLPGHVSMVMGRKHFEFLAAEYHLPGVISGFEAIELLSSLRQLLLL 243 Query: 243 KIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRF 302 + ++ V N YR VV + GN A+ + F + D WRG+GVI SG+ + +Y++F Sbjct: 244 ALEQNALVVNDYRNVVSEEGNSHAKYWMNHYFS-SCDEPWRGIGVIAQSGMDIREEYRQF 302 Query: 303 DAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAA 362 +A+ F P + + RCGEV+ G P +C LFG C P G MVSSEG+CAA Sbjct: 303 NAKEKFS-VPMRSPRKTKCRCGEVIRGLIDPPECSLFGKACTPLNPIGPCMVSSEGSCAA 361 Query: 363 WYQYRQQE 370 +YQY ++E Sbjct: 362 YYQYMREE 369 >UniRef50_D1Y5N2 Hydrogenase expression/formation protein HypD n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y5N2_9BACT Length = 360 Score = 295 bits (756), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 155/352 (44%), Positives = 198/352 (56%), Gaps = 3/352 (0%) Query: 20 LRERASHLSYTAER--PLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMG 77 L A L+ A R P+R+MEVCG HT +IF+ GL LLPE+V + GPGCPVCV Sbjct: 6 LSSAARTLAELARRTGPVRLMEVCGTHTVSIFRSGLRSLLPEDVALLSGPGCPVCVTDQA 65 Query: 78 RIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPT 137 +D + AS P V C++GD +RVPG+ GSL +A RG DVR+V S MD + LA P Sbjct: 66 DVDQAIAAASLPGVTLCSYGDMLRVPGRGGSLREAAGRGGDVRVVMSAMDVIPLALSEPR 125 Query: 138 RKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFL 197 R+ VFF +GFETT P TA+ LQ+AK V N +H ++P L L + P G+ FL Sbjct: 126 REFVFFAIGFETTTPQTALLLQEAKRLGVGNVSVLAEHKRVLPALELLAQDPQIGVKGFL 185 Query: 198 APGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRV 257 PGHVS +IG + Y +A + V GFE +L + L+ Q + ++ N Y Sbjct: 186 LPGHVSSIIGLEPYGILAEKYRVACAVGGFEGEQILLALCALLSQIVGGEPRIVNAYPSG 245 Query: 258 VPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCD 317 V D GN A+ I + F DS WRGLG I SG+ L Y DA A P Sbjct: 246 VRDRGNPRARALIDECF-TPCDSVWRGLGTIPQSGLKLRAPYACRDARAKLALPPAVNVP 304 Query: 318 DPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQ 369 P RCGEVL G+ P QC LFG C PQ G MVSSEG+C AWY+Y ++ Sbjct: 305 IPGCRCGEVLRGRLAPPQCALFGKNCTPQEPAGPCMVSSEGSCGAWYRYGRR 356 >UniRef50_B0TCN3 Hydrogenase expression/formation protein hypd n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TCN3_HELMI Length = 372 Score = 293 bits (751), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 156/371 (42%), Positives = 213/371 (57%), Gaps = 11/371 (2%) Query: 3 FVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVE 62 + +R PE Q+ E +RER L+ R + +ME CG HT AI + G+ +LL +V Sbjct: 5 ILKRFRDPELGRQMAEQVRERLDRLTDRLGRRVNVMEFCGTHTAAISRTGIRELLKPHVH 64 Query: 63 FIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIV 122 + GPGCPVCV ID + +A I TFGD M+VPG + +LL+ KARGADVR+V Sbjct: 65 LMSGPGCPVCVSDYVDIDRVIALAGMSGAIIATFGDMMKVPGSRTTLLEEKARGADVRVV 124 Query: 123 YSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTL 182 +S +DAL +A+EN R V+F G+GFETT PT A+T++QA NF+ + H P + Sbjct: 125 FSSLDALAIARENADRAVIFVGVGFETTAPTAAVTVEQAVQEGRDNFFLYSLHKITPPAM 184 Query: 183 RSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQ 242 +LL D +D L PGHVS++ G ++F++ D P VVAGFE L+LL V L Sbjct: 185 MALLPDRDLQVDGILLPGHVSLITGRGYWDFLSRDLALPGVVAGFELLELLSAVDALASS 244 Query: 243 KIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRF 302 + V N Y R V + GNL A A+A F + + WRGLG++ +S + L P+ + Sbjct: 245 LLEERCAVINAYGRAVREEGNLSALDALARCFDLQ-EGHWRGLGIVPASALKLKPELAPW 303 Query: 303 DAEAHF----RP-APQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSE 357 DAE F RP AP + C CGE+L GK P CPLF + C P G MVS E Sbjct: 304 DAEVRFPLENRPAAPPKGC-----LCGEILKGKKTPFDCPLFASRCEPARPVGPCMVSHE 358 Query: 358 GACAAWYQYRQ 368 G CA +Y+Y + Sbjct: 359 GTCATYYRYER 369 >UniRef50_A6LXR6 Hydrogenase formation HypD protein n=9 Tax=Clostridium RepID=A6LXR6_CLOB8 Length = 359 Score = 292 bits (748), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 133/341 (39%), Positives = 207/341 (60%), Gaps = 4/341 (1%) Query: 33 RPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVI 92 + +MEVCG HT A+ K G QL+ N+ + GPGCPVCV P G ID +E+ + VI Sbjct: 20 KKFNVMEVCGTHTQALSKLGFRQLVNPNINLLSGPGCPVCVTPEGYIDAAIELLKNSNVI 79 Query: 93 FCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMP 152 TFGD MRV G + +L++ + +G D++++YSP+D++ LA+EN +++VF G+GFETT P Sbjct: 80 LSTFGDMMRVNGSRENLIKQREKGKDIKVLYSPLDSIALAEENKDKEIVFLGVGFETTTP 139 Query: 153 TTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYN 212 A+ ++ A+ ++++N F + P L +L+QP++ I+ + PGHV+ V G D + Sbjct: 140 IIALAVKIAQEKNIRNISFLIGMKRMEPILHYILKQPNHNINGLMCPGHVAAVKGADYFK 199 Query: 213 FIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIAD 272 FI +++ P V+AGFE LD+ + L +Q+ + EN Y+ V GN A + I++ Sbjct: 200 FIVEEYNIPAVIAGFEALDIAGALYFLTKQQNKTEKRFENLYKTCVSQEGNKRANELISE 259 Query: 273 VFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRAR---CGEVLTG 329 VF + EWRG+GVI+ SG L Y+++DA F + + R C E+L G Sbjct: 260 VFTY-CEHEWRGIGVIKDSGFTLREKYKKYDASERFGINLSKTSEKNYIRACACSEILLG 318 Query: 330 KCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQE 370 K P++C LFG C P+ G MVS+EG+C+ +Y+YR E Sbjct: 319 KKLPNKCELFGKGCTPEHPIGPCMVSTEGSCSIFYKYRGVE 359 >UniRef50_B2TM77 Hydrogenase isoenzymes formation protein HypD n=2 Tax=Clostridium botulinum RepID=B2TM77_CLOBB Length = 361 Score = 290 bits (742), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 132/357 (36%), Positives = 211/357 (59%), Gaps = 7/357 (1%) Query: 14 MQLIEHLRERA------SHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGP 67 M+LI + + + A + IMEVCG HT +I++ G+++LLPEN+ + GP Sbjct: 1 MELINRFNDVSLCKTLLKEIEKNAMEKINIMEVCGTHTRSIYELGINKLLPENINLLSGP 60 Query: 68 GCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMD 127 GCP+CV P+ ID ++++ P+ I TFGD MRVPG SL + KA+G D+RI+YSP+D Sbjct: 61 GCPICVTPVNYIDNAIKLSKKPQTIIVTFGDMMRVPGSSSSLSEEKAKGMDIRIIYSPLD 120 Query: 128 ALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLE 187 ++K+A++N ++V+ G+GFETT P A+TL+ AKA+ + NF T+ T++ L+ Sbjct: 121 SIKIAEKNKDKEVILLGIGFETTAPIIALTLKYAKAKKINNFSVLLSIKTMPNTMKELVL 180 Query: 188 QPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAH 247 I+ F+ PGHV+ +IG + +N ++ + P+ + GF+ ++L G++ +V+ Sbjct: 181 DGRAKINGFICPGHVATIIGEEPFNILSMESKLPMSICGFKGTEILVGILSIVKLVNNNE 240 Query: 248 SKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAH 307 K EN YR V GN+ A++ I +VF ++ DS WRG+G I+ +G +Y+ FD+ Sbjct: 241 YKCENLYRGFVKKKGNIKAKELINEVFEIS-DSVWRGMGTIKQTGFDFKNEYKIFDSTKK 299 Query: 308 FRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWY 364 F +++ + CGE+L G P C FG C P+ G MVS+EG C Y Sbjct: 300 FLLRHRELNLNNNCICGEILQGISNPRDCLSFGKCCTPENPIGPCMVSNEGTCKIVY 356 >UniRef50_C1TK22 Hydrogenase expression/formation protein HypD n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TK22_9BACT Length = 361 Score = 289 bits (740), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 139/346 (40%), Positives = 206/346 (59%), Gaps = 1/346 (0%) Query: 24 ASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCV 83 +S L +RP IMEVCG HT +IF+ GL L PE+++ I GPGCPVCV G ID + Sbjct: 10 SSALKKLTKRPTTIMEVCGTHTVSIFRQGLRSLFPEDLKLISGPGCPVCVTSQGEIDGAI 69 Query: 84 EIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFF 143 E+A+ V+ T+GD MRVPG G+L + + G+DVR+V S M+ L++A+E P +++VF Sbjct: 70 ELATRKNVVMATYGDMMRVPGSNGTLGELRGTGSDVRVVLSAMETLRMAEEMPHKEIVFL 129 Query: 144 GLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVS 203 +GFETT P TA L +A+ R ++N C H + P L L + N +D FL PGHV+ Sbjct: 130 AVGFETTAPATAALLIEARKRKLENLSVLCLHKRVPPALEVLSKADGNRVDGFLLPGHVA 189 Query: 204 MVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGN 263 +++G + + FI VAGFE +++ +V L++Q + ++Y + V GN Sbjct: 190 VILGHEPFKFIPEKHGIACTVAGFEADEIMLALVDLLEQICENRPSLTSRYEKAVRPEGN 249 Query: 264 LLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRARC 323 + A + VF + S WRG+G I+ SG+ + +Y +D F A + V + RC Sbjct: 250 VKAVDLMDRVFDTS-TSAWRGIGPIDESGMSIKEEYSLWDGSRKFDVAVRNVPEPNGCRC 308 Query: 324 GEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQ 369 G++L+G P +CPLFG C P T G MVSSEG C+AWY+Y ++ Sbjct: 309 GDILSGTITPKECPLFGTGCTPVTPVGPCMVSSEGTCSAWYRYGRK 354 >UniRef50_Q2RGH3 Hydrogenase expression/formation protein HypD n=7 Tax=Bacteria RepID=Q2RGH3_MOOTA Length = 377 Score = 289 bits (739), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 160/370 (43%), Positives = 221/370 (59%), Gaps = 3/370 (0%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M +D + E +L+ + A ++ RP +EVCG HT AI + GL LL Sbjct: 1 MSPLDRFCDTELSRKLMGRVAALADEVAERLGRPAVFIEVCGTHTVAISRLGLRSLLAGR 60 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 VE GPGCPVCV ID V++A P V TFGD +RVPG + SL + +A GADVR Sbjct: 61 VELRSGPGCPVCVTDHQEIDMMVDLARLPGVTLGTFGDMLRVPGSRSSLERERAGGADVR 120 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 I YSP+DA+ A+ NP R+VVF G+GFETT P A +L +A+A+ V+NF F H + P Sbjct: 121 IFYSPLDAVAFAEANPEREVVFLGIGFETTAPAVAASLARARAKGVKNFSLFSAHKLIPP 180 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 LR++L P+ +D + PGHVS V G A++FI ++ P V++GF+P+D+L + L+ Sbjct: 181 ALRAVLSDPELKLDGLILPGHVSAVTGRRAFDFIVKEYGLPSVISGFDPMDILIALHELL 240 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 Q + ++V N+Y RVV + GNL A++ IA+ F D WRGLGVI SG+ L ++ Sbjct: 241 LQLLRGEARVANKYTRVVREEGNLDARKRIAECF-EEVDVPWRGLGVIPESGLSLRETFR 299 Query: 301 RFDA--EAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEG 358 FDA + + PAP P C E+L GK P +C LF N C P G MVSSEG Sbjct: 300 DFDARFKLNIEPAPPTPLYPPGCACKEILRGKLLPPECRLFSNVCTPVHPVGPCMVSSEG 359 Query: 359 ACAAWYQYRQ 368 ACAA+Y++ + Sbjct: 360 ACAAYYRFER 369 >UniRef50_C6PPY9 Hydrogenase formation HypD protein n=6 Tax=Clostridiales RepID=C6PPY9_9CLOT Length = 352 Score = 288 bits (737), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 147/352 (41%), Positives = 214/352 (60%), Gaps = 7/352 (1%) Query: 16 LIEHLRERASHLSYTAERP-LRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVL 74 + E++++ A + + P LRIMEVCG HTH IF+ G+ +LPEN+E I GPGCPVCV Sbjct: 1 MTENIKKTAKEIIQAYDGPKLRIMEVCGTHTHEIFRLGIRSILPENIELISGPGCPVCVT 60 Query: 75 PMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQE 134 P+G ID + +A H V CTFGD +RVPG + SL A+++GA V+IVYSP+DA + A+ Sbjct: 61 PVGFIDEAITLALHHNVTICTFGDLVRVPGSEMSLAGARSKGAKVQIVYSPIDAYEYAKN 120 Query: 135 NPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGID 194 + +VVF +GFETT P + +++++AK ++NF + T+ ++L D Sbjct: 121 HLEEQVVFLSVGFETTTPASCLSVKKAKEAGLENFALLTANKTMPRAYKTL----KGSAD 176 Query: 195 AFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQY 254 AFL PGHV + GT + ++ V+ GF +++ + +++ + S +N Y Sbjct: 177 AFLYPGHVHAITGTKLCESLVNE-GVSGVITGFTANEIMTALAVVITRLQEGGSFFKNCY 235 Query: 255 RRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQ 314 RVV G+ AQ ++++ N DSEWRGLGVIE+SG+ L Y+ FDA + F Sbjct: 236 PRVVTREGSKAAQTIVSELM-ENCDSEWRGLGVIENSGLKLKEAYKEFDARSKFNLPKIT 294 Query: 315 VCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQY 366 +P RCG+VL GKCKP C +FG C P GA MVS+EGAC+A+YQY Sbjct: 295 GKSNPACRCGDVLQGKCKPSDCRVFGKGCTPLHPVGACMVSNEGACSAYYQY 346 >UniRef50_B2KBC4 Hydrogenase formation HypD protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBC4_ELUMP Length = 346 Score = 287 bits (735), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 153/355 (43%), Positives = 215/355 (60%), Gaps = 11/355 (3%) Query: 16 LIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLP 75 +I+ L + A LS R + IMEVCG HT++I K GL LL EN+ I GPGCPVCV Sbjct: 1 MIKKLNDLAKRLS----RKVNIMEVCGTHTNSIAKNGLKSLLNENINLISGPGCPVCVSA 56 Query: 76 MGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDA-LKLAQE 134 G I+ +++A + I TF D +RVPG+ GSL +AKA GADVR++YSP+DA L+ + Sbjct: 57 DGDIEAAIDLALKKDNIIFTFADMLRVPGRNGSLQEAKASGADVRVIYSPLDAFLETGKT 116 Query: 135 NPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGID 194 N T V+ GFETT P A+ L++AK +NF+ F + P + +LL + +N ID Sbjct: 117 NKT--VILLASGFETTAPLIAVCLKKAKEAGFKNFFVFPVLKLINPAITALLSE-ENKID 173 Query: 195 AFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQY 254 FL PGHVS+VIG Y+FI+ F++P V+ GFE +++ ++ +V+Q + ++++N Y Sbjct: 174 GFLLPGHVSLVIGKKPYSFISKKFNKPGVIGGFEAEEIVAALIEIVKQLLEGKAQIQNAY 233 Query: 255 RRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQ 314 + + GN A + I DVF D+ WRG GVI SSG+ + +++ FDA F P Sbjct: 234 -PAIKEEGNQTALKMIEDVF-EPYDAVWRGFGVIPSSGLKIKKEFREFDALIKFNIKPCY 291 Query: 315 VCDDPRA-RCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQ 368 +A +C EVL GK P +CPLFG C P G MVSSEGAC A Y Y + Sbjct: 292 GGSLNKACKCAEVLKGKISPVKCPLFGKKCAPGKPLGPCMVSSEGACNALYNYEK 346 >UniRef50_C8WJD4 Hydrogenase expression/formation protein HypD n=29 Tax=Bacteria RepID=C8WJD4_EGGLE Length = 393 Score = 284 bits (726), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 151/362 (41%), Positives = 213/362 (58%), Gaps = 11/362 (3%) Query: 7 YRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHG 66 ++ P+ LIE + + + T +MEVCG HT AI + G+ L+PE G Sbjct: 40 FKDPKLARGLIESIAKLSPAGGAT------LMEVCGTHTVAIARNGIRNLMPEGTRLASG 93 Query: 67 PGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPM 126 PGCPVCV IDT + +A P + TFGD RVPG SLL +A G V+IVYSP+ Sbjct: 94 PGCPVCVTSNRDIDTVIALARVPGITIATFGDMTRVPGSTSSLLAEQAAGRSVQIVYSPL 153 Query: 127 DALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLL 186 DAL LAQ+NP R++VF G+GFETT P A+ +++A A ++NF F H + L +++ Sbjct: 154 DALTLAQQNPDREIVFVGVGFETTTPLVAMAIKRAAAAGLKNFSVFGAHKNMPGALEAII 213 Query: 187 EQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAA 246 P +DA + PGHVS +IG + Y F+A + P V+ GFEP+D+LQG+ M+++Q Sbjct: 214 NDPQLKVDALILPGHVSTIIGAEPYRFLAEKYGIPGVITGFEPVDVLQGIAMIMRQLHEG 273 Query: 247 HSKVENQYRRVVPDAGNLLAQQAIADVF--CVNGDSEWRGLGVIESSGVHLTPDYQRFDA 304 + +E Y R V GN +A AI +VF C + WRGLG I SG + ++ +FDA Sbjct: 274 RADIEIAYARGVMPEGNPVALAAIDEVFETCT---ALWRGLGEIPGSGYRIREEFAQFDA 330 Query: 305 EAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWY 364 F+P + D RCG+VL G P++CPLF C P+ G MVSSEG+CAA++ Sbjct: 331 VRRFQPDVEPTQDPKGCRCGDVLRGIMAPNECPLFRKVCTPENPVGPCMVSSEGSCAAYH 390 Query: 365 QY 366 +Y Sbjct: 391 RY 392 >UniRef50_B8D1S3 Hydrogenase formation HypD protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1S3_HALOH Length = 365 Score = 282 bits (722), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 210/369 (56%), Gaps = 7/369 (1%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M+ VDE + + ++ ++ A LS ++IMEVCG HT +IFK G+ LLP++ Sbjct: 1 MKCVDELSDRKIISGIVSKIK--AIKLS----GKVKIMEVCGTHTMSIFKNGIKSLLPDS 54 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 +E I GPGCPVCV P ID + +A VI TF D +RVPG G+L + + ++ Sbjct: 55 IELISGPGCPVCVTPDIYIDKALALAKKENVIITTFADLLRVPGSSGTLQEMRVNRKNIT 114 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 VYSP++A+K+A NP ++V+F +GFETT+P A+++ +A + NF + P Sbjct: 115 TVYSPLEAVKIAYNNPGQEVIFLAIGFETTIPAIALSIIKANQLGLNNFSILQSLKIMPP 174 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 L+ L+ D +D F+ PGHVS + G + F+A D+H P VVAGFEP D++ + L Sbjct: 175 VLQELVLDKDLDVDGFILPGHVSTISGLQPFEFLARDYHVPGVVAGFEPGDIILSIYTLC 234 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 + +V+N Y R+V GN AQ+ I ++F DS WRGLG I SG+ L Y Sbjct: 235 KMLKDNDIRVKNLYPRLVRLEGNKKAQELIKEIF-TPVDSYWRGLGTITGSGLKLRKVYH 293 Query: 301 RFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGAC 360 R+ AE F+ Q CGE+L GK KP C LFG C P G MVS EG C Sbjct: 294 RYSAEKKFQFGDTQYRPGKGCICGEILKGKQKPTDCRLFGIKCTPMKPEGPCMVSREGTC 353 Query: 361 AAWYQYRQQ 369 AA+Y+YR + Sbjct: 354 AAYYRYRGK 362 >UniRef50_B5YB75 Hydrogenase expression/formation protein HypD n=2 Tax=Dictyoglomus RepID=B5YB75_DICT6 Length = 352 Score = 280 bits (716), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 134/348 (38%), Positives = 204/348 (58%), Gaps = 2/348 (0%) Query: 20 LRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRI 79 L++ + + + + IME CG HTH IF++G+ ++LP N+ + GPGCPVCV I Sbjct: 3 LKDLLEKIRTISTKEINIMEFCGTHTHEIFRYGIREILPPNIHLLSGPGCPVCVTAEEDI 62 Query: 80 DTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRK 139 D + ++ + TFGD + VPG GSL +ARG +VR+VYSP+++L +A+ENP +K Sbjct: 63 DYIIALSQEYNLGIITFGDLVNVPGSLGSLNYLRARGKEVRVVYSPLESLNIAKENPHKK 122 Query: 140 VVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAP 199 + G+GFETT P A TL +A +++N YF H P ++++L+ + +D + P Sbjct: 123 YLLVGIGFETTAPNLAYTLIKATEENIKNLYFLSLHKLTPPAMKAILDMGEIKLDGIIGP 182 Query: 200 GHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVP 259 GHVS +IG + I + P V+ GF+P +++ G+ LV+ K+ N Y R V Sbjct: 183 GHVSTIIGRVGWKEIFEKYRVPFVIMGFKPEEIVYGIYHLVKIIEEGEPKLLNAYERSVK 242 Query: 260 DAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDP 319 + GN A + + VF G + WRGLG+IE SG+ L +++ FD + ++ D+ Sbjct: 243 EEGNKHALEVMYKVF-KKGPANWRGLGIIEESGLVLREEFEDFDVRRIYPLKIEKRVDNY 301 Query: 320 R-ARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQY 366 +CGEVL G KP +CPLFG C P+ G MVSSEG C+A+Y Y Sbjct: 302 NPCKCGEVLRGVLKPTECPLFGKACTPEYPKGPCMVSSEGTCSAYYLY 349 >UniRef50_Q58400 Putative hydrogenase expression/formation protein MJ0993 n=8 Tax=Euryarchaeota RepID=Y993_METJA Length = 358 Score = 280 bits (715), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 145/354 (40%), Positives = 211/354 (59%), Gaps = 6/354 (1%) Query: 16 LIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLP 75 LI+ ++ + L+ ++ L+IM VCG H H I K+G+ +LPEN+ + GPGCPVCV Sbjct: 9 LIKKAIDKINKLAEKIDK-LKIMHVCGSHEHTICKYGIRDVLPENITVVPGPGCPVCVTT 67 Query: 76 MGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQEN 135 IDT + +A + VI T GD RVPG + SL++ ++ G DVRIVYS +A+K+A++ Sbjct: 68 QKEIDTAIYLADNGYVI-TTLGDMYRVPGSEKSLMEKQSEGCDVRIVYSISEAVKMAKKE 126 Query: 136 PTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDA 195 +K VF +GFETT PTT L K +DV NF+ H P + LL + +DA Sbjct: 127 RDKKFVFVAIGFETTAPTTGAELISLKNKDVNNFFILNCHRQTPPVMEFLLNE-GVYLDA 185 Query: 196 FLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYR 255 F+ PGHVS + G Y + + P+VVAGFEP+D+L ++M+++Q I+ +KVEN+Y Sbjct: 186 FICPGHVSTITGLKPYYGLCEKYKAPMVVAGFEPIDVLMAIIMILKQVISGEAKVENEYI 245 Query: 256 RVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQV 315 R V GN+LAQ+ I +VF + D WRG V+++ G L Y++FD H P+ Sbjct: 246 RAVKPEGNVLAQKIINEVF-ESIDVPWRGFPVVKNGGFGLREKYKKFDIYEH-EDIPEIK 303 Query: 316 CDDPRA-RCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQ 368 P+ C ++L G+ P CPLFG C P G+ MVS EG C +Y+YR+ Sbjct: 304 EKIPKGCICDKILRGEKLPTDCPLFGTVCTPLNPVGSCMVSDEGTCRIFYKYRR 357 >UniRef50_C5RHD4 Hydrogenase formation HypD protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5RHD4_CLOCL Length = 390 Score = 278 bits (712), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 140/385 (36%), Positives = 203/385 (52%), Gaps = 47/385 (12%) Query: 28 SYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIAS 87 S +R +RIME+CG HT I K G+ +LLP N++ I GPGCPVCV G ID + ++ Sbjct: 3 SLEIDREIRIMEICGTHTTTILKSGIRKLLPPNIKLISGPGCPVCVTSQGYIDAAINLSE 62 Query: 88 HPEVIFCTFGDAMRVPG------------------------------------------- 104 +I TFGD + VPG Sbjct: 63 KENLIITTFGDMLNVPGSIPFEDKDGLLNNENSDNPSNIRNIIQDQYGDKGNTFIFKDIN 122 Query: 105 ---KQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQA 161 K SL+ +A+G DVR++YSP++AL +A++NP ++VVF +GFETT PT A+T++QA Sbjct: 123 FNTKANSLMNQRAKGKDVRVIYSPLEALNIAKKNPNKEVVFLAIGFETTAPTIALTIEQA 182 Query: 162 KARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRP 221 +++NF F T+ ++ L+ + +D + PGHVS +IG +A+ F++ + H P Sbjct: 183 YQENIRNFSAFTSLKTMPEAIKGLISDKEINVDGVICPGHVSTIIGENAFKFMSEELHMP 242 Query: 222 LVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSE 281 V+AGFE D+L V +LV +++N Y VV GN A++ I V V DS Sbjct: 243 SVIAGFEDRDVLIAVCLLVDMIRENKHELKNIYGSVVKLEGNKKAKELINKVLNV-VDSN 301 Query: 282 WRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGN 341 WRGLG I++SG+ ++ Y+ FDA F Q+ CG +L G+ P C LFG Sbjct: 302 WRGLGEIKNSGLAISDKYKAFDAVIKFNIKVQEALSASGCICGSILKGQKTPEDCKLFGK 361 Query: 342 TCNPQTAFGALMVSSEGACAAWYQY 366 C P + G MVS EG C Y+Y Sbjct: 362 KCTPYSPLGVCMVSKEGTCGIHYKY 386 >UniRef50_D1BLR9 Hydrogenase formation HypD protein n=5 Tax=Veillonellaceae RepID=D1BLR9_VEIPT Length = 372 Score = 278 bits (712), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 134/333 (40%), Positives = 206/333 (61%), Gaps = 2/333 (0%) Query: 35 LRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFC 94 +R+MEVCG HT +IF+ GL QLLP +E + GPGCPVCV +D + A +VI Sbjct: 30 VRLMEVCGTHTVSIFREGLRQLLPCGIELVSGPGCPVCVTDQTYMDKALAYAECEDVIIA 89 Query: 95 TFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTT 154 TFGD ++VPG SL +A+ +GA + ++Y+P++ ++L+++ P +K+VF +GFETT+ Sbjct: 90 TFGDMLKVPGSYSSLNEAQTKGAHIHVIYTPLEVIELSKKYPEKKIVFLAIGFETTIAII 149 Query: 155 AITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFI 214 T++ A ++N +F H + P LR+LL++ + ID F+ PGHVS++IG + Y F+ Sbjct: 150 CATVKAVHAAGLKNVFFLVSHKLVPPALRALLDKQEGHIDGFILPGHVSVIIGEEPYQFL 209 Query: 215 ASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVF 274 ++ P +AGF+ L++L + +++Q+ + + V N Y VV GN +AQ I +V+ Sbjct: 210 PKEYGIPSCIAGFDGLEILSAIANILEQRKSGNIVVGNTYHSVVMQKGNPVAQAMIEEVY 269 Query: 275 CVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRA-RCGEVLTGKCKP 333 V D WRG+GVI +SG+ L +Y +D E + DP+ +CG VL G KP Sbjct: 270 EVC-DDVWRGIGVIPNSGLALKGEYAAYDVELVLPINLDKPSLDPKGCQCGRVLQGLIKP 328 Query: 334 HQCPLFGNTCNPQTAFGALMVSSEGACAAWYQY 366 +C LFG +C GA MVS EG+CAAWY+Y Sbjct: 329 SECLLFGKSCTADHPVGACMVSVEGSCAAWYKY 361 >UniRef50_Q46BF2 Hydrogenase expression/formation protein n=8 Tax=Euryarchaeota RepID=Q46BF2_METBF Length = 372 Score = 275 bits (702), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 153/370 (41%), Positives = 213/370 (57%), Gaps = 26/370 (7%) Query: 10 PEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGC 69 PE +L+E +R+ ++PLRIM VCG H I K+GL +LP+N+E I GPGC Sbjct: 13 PEIEKKLLERIRD--------FDKPLRIMHVCGTHERTIAKYGLRSILPKNIEVISGPGC 64 Query: 70 PVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDAL 129 PVCV P I+ + +A + TFGD MRVPG SLL AK+ GA+V++VYS DA+ Sbjct: 65 PVCVTPEEDINIAIALAKSGATVV-TFGDMMRVPGSAESLLDAKSEGANVKMVYSIDDAI 123 Query: 130 KLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQP 189 LA++ P +VVFFG+GFETT+P A L + + +NF P + L Sbjct: 124 ALAEKKPELEVVFFGIGFETTVPANAAALLR---KTPENFSLLTSQKQTPPAVEFLARDA 180 Query: 190 DNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSK 249 D +DAF+APGHV+ +IGT + +A P+ V+GFEP D+L G+ +L Q S+ Sbjct: 181 D--VDAFIAPGHVATIIGTKPFESLAEKGF-PIAVSGFEPGDILLGINLLQLQAEEGISR 237 Query: 250 VENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDA----E 305 V+N Y R V GN +A + + +VF + DSEWRG+G IE+SG+ L +++ DA E Sbjct: 238 VDNGYPRAVKPEGNQIALKIMNEVFETS-DSEWRGIGKIENSGLVLRKEFEEKDAAKKHE 296 Query: 306 AHFRPAPQQV------CDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGA 359 + A + V D R C +LTGK KP QCP FG C P+ G MVS EG Sbjct: 297 DLYASALEDVRKKTGGKDKKRCICAAILTGKAKPSQCPNFGKECTPKNPAGPCMVSQEGM 356 Query: 360 CAAWYQYRQQ 369 C W++Y ++ Sbjct: 357 CYNWFRYSRE 366 >UniRef50_C1SHT6 Hydrogenase maturation factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHT6_9BACT Length = 357 Score = 271 bits (693), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 152/365 (41%), Positives = 206/365 (56%), Gaps = 11/365 (3%) Query: 3 FVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVE 62 ++++R + +LI+ + + A+ Y R MEVCG HT AI KFG+ +LP N++ Sbjct: 1 MIEDFRNADICKKLIKQIEKEATKDVY------RFMEVCGSHTMAIAKFGIKSVLPSNID 54 Query: 63 FIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQA-KARGADVRI 121 + GPGCPVCV P ID EIA VI TFGD MRVPG +G LQ K+ G DVRI Sbjct: 55 LVSGPGCPVCVTPQCEIDALFEIAEKGAVI-ATFGDMMRVPGSKGQNLQKMKSEGCDVRI 113 Query: 122 VYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPT 181 V+SP+D LK+A+E ++VVF G+GFETT P A A+ V+N + T+ Sbjct: 114 VFSPLDTLKIAKET-DKEVVFVGIGFETTAPAVAGLAIMAEKAGVKNVSITPYNKTMPEV 172 Query: 182 LRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQ 241 L ++ + I+ F+ PGHV+ V G Y+ I + V+ GFEP+D+L ++ +V+ Sbjct: 173 LSLIISDKNLQINGFVCPGHVTAVTGIGLYDPIVKE-GMAAVITGFEPVDVLSSILEMVR 231 Query: 242 QKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQR 301 Q K N Y RVV D GN A+ I V+ G WRG+G IE SG+ +Y++ Sbjct: 232 QVNTEDFKAVNMYSRVVADEGNAKARDVINAVYEKQG-CWWRGIGFIEESGLAFRKEYEQ 290 Query: 302 FDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACA 361 FDA F + + CGEVL G KP +C LFG C PQ G MVSSEGACA Sbjct: 291 FDAFRKFDVTLEGDDEIAGCSCGEVLKGYIKPTECALFGTACTPQNPVGPCMVSSEGACA 350 Query: 362 AWYQY 366 A Y+Y Sbjct: 351 AAYKY 355 >UniRef50_Q3ABW4 Hydrogenase expression/formation protein HypD n=2 Tax=Carboxydothermus hydrogenoformans RepID=Q3ABW4_CARHZ Length = 358 Score = 269 bits (688), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 140/338 (41%), Positives = 202/338 (59%), Gaps = 8/338 (2%) Query: 35 LRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFC 94 + IMEVCG HT A+F+ G+ LLP+N+ I GPGCPVCV + E+ V Sbjct: 26 INIMEVCGTHTMALFEHGIRSLLPQNINLISGPGCPVCVTGEEIMVEAFELLEKHNVTLF 85 Query: 95 TFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTT 154 TFGD ++VPG+ +L KA+G V++ YSP +A++ A++NP +VVFFG GFETT P Sbjct: 86 TFGDMLKVPGEGRTLSILKAQGFSVKVAYSPRNAIEFAEKNPNIEVVFFGAGFETTAPAL 145 Query: 155 AITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFI 214 T+ +A + ++NF F T+ P L L+E ++ ID F+ PGHVS VIG A+ FI Sbjct: 146 GATILEAYTKKLKNFSMFLAVKTVPPALGFLVEH-NSLIDGFILPGHVSAVIGAKAFRFI 204 Query: 215 ASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVF 274 ++ P V GF +LL G+ ++V+ + N Y VV + GN+ AQ+ I +VF Sbjct: 205 TENYQIPAAVTGFTAEELLLGISLVVKSILKKEPSYYNAYPHVVREQGNVEAQRIIEEVF 264 Query: 275 CVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHF--RPAPQQVCDDPRA-RCGEVLTGKC 331 GD+ WRG+G I SG+ + Y ++DA + R P V PR +CGE++ G+ Sbjct: 265 -EKGDANWRGIGNIPLSGLFIRERYSQYDARKKYGLREKPPIV---PRGCKCGEIMLGRM 320 Query: 332 KPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQ 369 P +CPLF C P+ GA MVSSEG+CAA+Y+Y ++ Sbjct: 321 LPPECPLFAKGCTPEKPVGACMVSSEGSCAAYYKYGRR 358 >UniRef50_O28901 Hydrogenase expression/formation protein (HypD) n=1 Tax=Archaeoglobus fulgidus RepID=O28901_ARCFU Length = 371 Score = 267 bits (682), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 148/356 (41%), Positives = 198/356 (55%), Gaps = 18/356 (5%) Query: 13 VMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVC 72 V++L E +RE + ++IM +CG H I K+ L LLPEN+ + GPGCPVC Sbjct: 20 VIRLSEKIRELSKEFE-----SVKIMHLCGTHEDTITKYNLRSLLPENISLLSGPGCPVC 74 Query: 73 VLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLA 132 + P I + + + TFGD RVP + SL +A G D+RIVYS D+LKLA Sbjct: 75 ITPDEDIQMVMHLLEKENITLATFGDMARVPFQGKSLFTLRAEGYDIRIVYSIFDSLKLA 134 Query: 133 QENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNG 192 E+ R VV F +GFETTMP+TAI L K +NFY F H IP + +L E + Sbjct: 135 -ESSDRPVVHFAIGFETTMPSTAIALLDEK----ENFYVFSAHRFFIPAVHALCE--NTT 187 Query: 193 IDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVEN 252 +DAF+ PGHVS +IG Y I + P V+AGFEP D++ + +L++ +V N Sbjct: 188 VDAFINPGHVSTIIGVKPYREILKKYGIPQVIAGFEPEDVMLAIYLLLEAMSDGRREVIN 247 Query: 253 QYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPA- 311 +Y R V + GN+ A +A+ VF D WRGLGV++ SG L +++FDA F A Sbjct: 248 EYSRAVKEEGNVRALEAMDRVF-RKEDWSWRGLGVVKGSGGALAKRFEQFDARKVFEDAF 306 Query: 312 --PQQVCDDPR--ARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAW 363 Q V D + RCG+VL G P CPLF CNP+ GA MVS EG C W Sbjct: 307 ADFQPVEDKSKRLCRCGDVLKGIATPKDCPLFMKACNPRNPVGACMVSVEGTCNIW 362 >UniRef50_Q5H7P6 Hydrogenase expression/formation protein HypD n=11 Tax=Euryarchaeota RepID=Q5H7P6_PYRKO Length = 372 Score = 264 bits (674), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 203/369 (55%), Gaps = 13/369 (3%) Query: 5 DEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFI 64 + YR+ E M+L+E +RE A T + +RIM VCG H + + G+ LLPENV+ + Sbjct: 6 EAYRSREVAMKLVEKIREEAK----TLDGEIRIMHVCGTHEDTVTRHGIRSLLPENVKVV 61 Query: 65 HGPGCPVCVLPMGRIDTCVEIASHP-----EVIFCTFGDAMRVPGKQGSLLQAKARGADV 119 GPGCPVC+ P+ I I E+I TFGD ++P GS K+ G DV Sbjct: 62 SGPGCPVCITPVEDIVAMQLIMRKAREEGEEIILTTFGDMYKIPTPMGSFADLKSEGFDV 121 Query: 120 RIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLI 179 RIVY D ++A+ENP + VV F GFETT A L A +++NF + H Sbjct: 122 RIVYGIFDTYRIAKENPDKTVVHFSPGFETTTAPAAGMLNVAAQEELENFKIYSVHRLTP 181 Query: 180 PTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVML 239 P + LL+Q +APGHVS +IG + ++ + P VVAGFEP D+L ++ML Sbjct: 182 PAVEVLLKQ-GTVFQGLIAPGHVSTIIGVKGWEYLTEKYGIPQVVAGFEPNDVLMAILML 240 Query: 240 VQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDY 299 ++ +++ N+Y R V GN++AQ+ I F V D++WR LGV SG+ L ++ Sbjct: 241 IRMYKEGEARIINEYERAVKYEGNVVAQKMIDKFFEVV-DAKWRALGVFPKSGLELRKEW 299 Query: 300 QRFDAEAHFR-PAPQQVCDDPRA-RCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSE 357 + F+ + ++ P+ + D + RCG VL G P CPLFG TC P+ G MVS E Sbjct: 300 KDFEIRSFYKVEVPKNLPDLEKGCRCGAVLRGLALPTDCPLFGKTCTPRHPVGPCMVSYE 359 Query: 358 GACAAWYQY 366 G C +Y+Y Sbjct: 360 GTCQIFYKY 368 >UniRef50_B5Y919 Hydrogenase expression/formation protein HypD n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y919_COPPD Length = 347 Score = 262 bits (670), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 136/346 (39%), Positives = 190/346 (54%), Gaps = 1/346 (0%) Query: 28 SYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIAS 87 +++++ P IMEVCG HTH +F+ G+ LP V+ I GPGCPVCV + + +A+ Sbjct: 3 TFSSDNPATIMEVCGTHTHELFRTGIRFALPNWVKLISGPGCPVCVTDDKDLAKVILMAT 62 Query: 88 HPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGF 147 + ++ TFGD ++VP GSL ++ G +V++VYSP+DA+K A E+ +FF +GF Sbjct: 63 NYDLTVITFGDMIKVPTPFGSLASLRSEGKNVQVVYSPVDAVKYAMEHQEETCLFFAVGF 122 Query: 148 ETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIG 207 ETTMP A ++ AR+V N +F H ++P L +L ID L PGHVS +IG Sbjct: 123 ETTMPAVAAAIKDRLARNVDNLFFLVNHKRIVPALYALFGSGRVKIDGLLLPGHVSAIIG 182 Query: 208 TDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQ 267 + Y + S + P VV GF +L+G+ +L++ + V N Y VV + GN AQ Sbjct: 183 SKPYEPVLSKYDVPGVVTGFSKDQMLRGINILLKLIVNDKFDVINAYPEVVREEGNKKAQ 242 Query: 268 QAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVL 327 I F V G + WRG G I S + L ++ DAE F V P RC +V+ Sbjct: 243 ALIESYFEVGG-AFWRGFGFIPDSAMVLKKEFSDLDAETQFPVEEPNVSPPPGCRCADVV 301 Query: 328 TGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQESEA 373 G P CPLFG TC Q G MVSSEG CAAW +Y S Sbjct: 302 LGAADPPSCPLFGKTCTLQNPVGPCMVSSEGTCAAWLRYGGATSNG 347 >UniRef50_A5ULS2 Hydrogenase expression/formation protein, HypD n=3 Tax=Methanobrevibacter RepID=A5ULS2_METS3 Length = 348 Score = 262 bits (669), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 137/337 (40%), Positives = 195/337 (57%), Gaps = 7/337 (2%) Query: 34 PLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIF 93 P++IM VCG H HAI + G+ LLP VE I GPGCPVCV+P ID C+E+ V Sbjct: 18 PVKIMHVCGSHEHAIMENGIRSLLPPEVEIIAGPGCPVCVVPSREIDECLELVDR-GVTV 76 Query: 94 CTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPT 153 TFGD +RVPG + SL +AKA G DVR+VY A+++A E VVF GFETT PT Sbjct: 77 TTFGDMLRVPGSERSLAEAKAEGGDVRVVYGINKAIEIA-EKEDNDVVFMAAGFETTAPT 135 Query: 154 TAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNF 213 TA + A +NF H + P + L+ + ++A + PGHV +IGT + + Sbjct: 136 TA---AEILAEPPENFSVLSCHRLIPPAIDYLINSGETNLNALIEPGHVCTIIGTKPFEY 192 Query: 214 IASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADV 273 +++D+ P VAGF PLD+L V M+++Q K++N+Y R V D GN++AQ+ I V Sbjct: 193 LSTDYGIPQAVAGFNPLDILMSVYMILRQIRDDTPKIDNEYNRAVRDEGNIIAQKVIDQV 252 Query: 274 FCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRA-RCGEVLTGKCK 332 F V G EWRG I +S + + ++ +++A A + + V + P+ CG +L G + Sbjct: 253 FDV-GSREWRGFPKIPNSILEIKDEFSQYNARAKYDIEVKDVKEAPKGCICGPILRGLAR 311 Query: 333 PHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQ 369 P C LF +CNP GA MVS EG C ++Y + Sbjct: 312 PEDCKLFRKSCNPLHPIGACMVSKEGTCNIAHRYSRD 348 >UniRef50_A3DJT1 Hydrogenase formation HypD protein n=4 Tax=Clostridium RepID=A3DJT1_CLOTH Length = 349 Score = 261 bits (668), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 133/357 (37%), Positives = 204/357 (57%), Gaps = 17/357 (4%) Query: 14 MQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCV 73 M+ +E +++ L + ++IMEVCG HT +IFK G+ L+ ++ I GPGCPVCV Sbjct: 1 MKTLEAIKK---ELGEYEGKNIKIMEVCGTHTSSIFKNGIRSLISPRIQLISGPGCPVCV 57 Query: 74 LPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQ 133 ID VE + TFGD M+V G + SL +AKA G +V+I+YSP+ A+K+A Sbjct: 58 TASSYIDRLVEYSLKDNHCVLTFGDMMKVKGHKLSLTEAKATGGNVKILYSPLSAVKIAI 117 Query: 134 ENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGI 193 ++P + +F +GFETT P A+ +++ +++N T+IP + + E N I Sbjct: 118 KSPETQFIFAAVGFETTAPIYALMIEEIIKNNIKNLKLMTSIKTIIPAISYICENEKN-I 176 Query: 194 DAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQ 253 DAFL PGHVS++IG+ Y +A + +P V+ GFE ++ + +++Q ++N Sbjct: 177 DAFLCPGHVSVIIGSSVYTDMALKYRKPFVIGGFEGGHIIAAIYEIIRQISNNEYSMKNM 236 Query: 254 YRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQ 313 Y+ V GN A+ I D + D WRG+G+I++SG+ L +Y+ FDA + Sbjct: 237 YQSAVSPEGNQKAKSLI-DKYFEAADDYWRGIGIIKNSGLRLRTEYRDFDAGS------- 288 Query: 314 QVCDDPRA-----RCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQ 365 + +D A +C +V+ G+ P QCPLFG C P A GA MVSSEGAC WY+ Sbjct: 289 TIFEDADAAPSGCKCADVILGRITPAQCPLFGKACTPLNAVGACMVSSEGACGIWYR 345 >UniRef50_Q0W4N4 Hydrogenase expression/formation protein (Maturation factor) n=8 Tax=Euryarchaeota RepID=Q0W4N4_UNCMA Length = 357 Score = 261 bits (666), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 142/338 (42%), Positives = 193/338 (57%), Gaps = 16/338 (4%) Query: 31 AERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPE 90 A R ++IM VCG H + I K G+ LLP NV+ + GPGCPVCV P ID CVE+A + Sbjct: 20 AGREIKIMHVCGTHEYTITKSGIRSLLPANVKVVMGPGCPVCVTPQSEIDACVELAEQGK 79 Query: 91 VIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFETT 150 +I CT+GD +RVPG + SL D+RIV S A+ +A++ P R+VVF +GFETT Sbjct: 80 II-CTYGDLLRVPGTKSSLYDTV---GDIRIVQSIAQAVDIARQTPDREVVFMAVGFETT 135 Query: 151 MPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDA 210 PTTA L + +NF H + P ++ L++Q + ++ FL PGHV V+G Sbjct: 136 APTTAAVLL---SNPPENFSIIVSHRLVPPAMKWLMQQGEANLNGFLLPGHVCTVMGIHE 192 Query: 211 YNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAI 270 Y F P V+AGF+ +++L G+ +LV+Q + + VEN Y R V GNL AQ+ + Sbjct: 193 YE----AFPVPQVIAGFDAMEVLYGLYLLVKQIVEGRAVVENAYARAVKPEGNLKAQKMM 248 Query: 271 ADVF--CVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLT 328 A+VF C D WRG VI SG L P ++++DA F + V C E+L Sbjct: 249 AEVFEPC---DIMWRGFPVIPDSGYKLKPQFEKYDALKKFGIELKDVKCTTGCLCNELLR 305 Query: 329 GKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQY 366 G +P C LFG C P GA MVS+EGAC WY Y Sbjct: 306 GVKEPTDCKLFGKACTPLKPVGACMVSTEGACRIWYTY 343 >UniRef50_C9KK61 Hydrogenase expression/formation protein HypD n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KK61_9FIRM Length = 348 Score = 258 bits (659), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 137/332 (41%), Positives = 188/332 (56%), Gaps = 6/332 (1%) Query: 35 LRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFC 94 +RIMEVCG HTH IF+ G+ LLPE VE I GPGCPVCV P+ ID + +A C Sbjct: 20 VRIMEVCGTHTHEIFRLGIRSLLPEAVELISGPGCPVCVTPVSYIDEALYLAEKCHATIC 79 Query: 95 TFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTT 154 TFGD +RVPG G+L +A++RGA V++VY+P+DA+ A E+P + VF +GFETT PT Sbjct: 80 TFGDLVRVPGTAGTLAEARSRGARVQVVYTPLDAVTYATEHPEEETVFLSVGFETTTPTA 139 Query: 155 AITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFI 214 + L+ A+A+ NF + T+ ++ DA+L PGHV + GT + Sbjct: 140 CLALRHAEAQHTANFSLLTANKTMPAAYTAMASH----TDAYLYPGHVCAITGTSLPESL 195 Query: 215 ASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVF 274 + VVAGF +LL+ + ++++ A N Y RVV GN A QA+ + Sbjct: 196 TREGISG-VVAGFTAGELLRALATILEKVQADRPFFANCYPRVVRPEGN-PAAQALVAAY 253 Query: 275 CVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPH 334 D+EWRGLGV++ SG+ L + DA F +P RCG +L G +P Sbjct: 254 MEPCDAEWRGLGVLKESGLQLREAFAARDARKRFALPAMTGRANPACRCGAILQGLARPV 313 Query: 335 QCPLFGNTCNPQTAFGALMVSSEGACAAWYQY 366 CPL+G C P GA MVS EGAC+A+Y Y Sbjct: 314 DCPLYGKACTPDHPVGACMVSREGACSAYYLY 345 >UniRef50_C5CEU3 Hydrogenase formation HypD protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEU3_KOSOT Length = 338 Score = 256 bits (653), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 137/337 (40%), Positives = 196/337 (58%), Gaps = 4/337 (1%) Query: 33 RPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVI 92 + R+ME+CG HTHA+ ++GL +L E +E + GPGCPVCV ID + + I Sbjct: 4 KKYRVMEICGTHTHALMRYGLKELYSERLELVCGPGCPVCVTSQSDIDRILYLCDLGMRI 63 Query: 93 FCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMP 152 + TFGD M+VPGK G+L + KA GA VR VY+P+ + +++P R VF +GFETT P Sbjct: 64 Y-TFGDLMKVPGKNGNLRERKALGACVREVYNPLWIVDDMKKDPARGAVFVAIGFETTAP 122 Query: 153 TTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYN 212 A +++ + ++N Y + + P + +LLE +N +D F+ PGHVS +IG Y Sbjct: 123 LIASLIEEIERERIENLYVYLLLKLIPPAMEALLEDEENKLDGFICPGHVSTIIGERPYI 182 Query: 213 FIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIAD 272 +A +P V+AGF +L + + + + V N Y V GNL A++ I + Sbjct: 183 KLAEKVKKPFVIAGFTREELTVALEKMSEMLEKSAYGVVNVYASAVKPEGNLDAREKIKN 242 Query: 273 VFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCK 332 F V D+ WRGLG I +SG+ L Y+RFD AHF+ + V + CGEVLTGK K Sbjct: 243 FFEVT-DTLWRGLGTIPNSGLKLREKYRRFDVMAHFQ--MENVSSEDPCPCGEVLTGKIK 299 Query: 333 PHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQ 369 P +C LFG C P+T G MVSSEGAC A + Y ++ Sbjct: 300 PEECQLFGTLCLPETPVGPCMVSSEGACHASFLYGRK 336 >UniRef50_C5A3E4 [NiFe] hydrogenase maturation protein (HypD) n=4 Tax=Euryarchaeota RepID=C5A3E4_THEGJ Length = 374 Score = 254 bits (648), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 138/367 (37%), Positives = 201/367 (54%), Gaps = 13/367 (3%) Query: 7 YRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHG 66 YR E +L+E ++E A T + +RIM VCG H I + G+ LLPENV+ + G Sbjct: 10 YRDREIAQKLVEKIKEEAK----TLDGEIRIMHVCGTHEDTITRSGIRSLLPENVKVVSG 65 Query: 67 PGCPVCVLPMGRIDTCVEIASHP-----EVIFCTFGDAMRVPGKQGSLLQAKARGADVRI 121 PGCPVC+ P+ I I E+I TFGD ++P GS K+ G DVR+ Sbjct: 66 PGCPVCITPVEDIVAMQLIMKKAREEGDEIILTTFGDMYKIPTPMGSFADLKSEGYDVRV 125 Query: 122 VYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPT 181 VYS DA K+A+ENP + VV F GFETT TA L D++NF + H L P Sbjct: 126 VYSIYDAYKMAKENPDKTVVHFSPGFETTTAPTAGMLNAVVNEDIENFKIYSVH-RLTPQ 184 Query: 182 LRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQ 241 +L + + IDA + GHVS +IG + F++ + P V+AGFEP D+L +++L++ Sbjct: 185 GIEVLIKQKSRIDALIDAGHVSTIIGVRGWEFLSEKYGIPQVIAGFEPNDVLLAILLLIR 244 Query: 242 QKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQR 301 ++V N+Y+R V GN++AQ+ + F V D++WR LGV +G+ + +++ Sbjct: 245 MYKEGDARVVNEYKRAVKYEGNVVAQELMNRYFKVV-DAKWRALGVFPKTGLEVRDEFKE 303 Query: 302 FDAEAHFR-PAPQQVCDDPRA-RCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGA 359 + +R P+ + D + CG VL G P CP FG TC P+ G MVS EG Sbjct: 304 LEIRNSYRVEVPKNLPDLEKGCLCGAVLRGLAMPTDCPHFGKTCTPRHPIGPCMVSYEGT 363 Query: 360 CAAWYQY 366 C +Y+Y Sbjct: 364 CHIFYKY 370 >UniRef50_B1L5X9 Hydrogenase maturation factor n=4 Tax=Archaea RepID=B1L5X9_KORCO Length = 379 Score = 251 bits (642), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 139/382 (36%), Positives = 217/382 (56%), Gaps = 24/382 (6%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 MR + + R+ E ++ +RE A + ++IM CG H I +G+ L+PE Sbjct: 1 MRSLTDLRSDEIASRISSKIREIAKRVG-----SVKIMNFCGTHEWTITHYGIRYLMPEE 55 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQG-----SLLQAKAR 115 VE + GPGCPVC+ P +D V++A + TFGDA R+ G + +L +AK Sbjct: 56 VELVAGPGCPVCITPAYYVDAVVKLAVE-GIRVMTFGDAFRLMGTKARGLPRNLEEAKQD 114 Query: 116 GADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDV-QNFYFFCQ 174 GADVRIVYS +DA+K+A+++ ++ +FFG+GFETT P T L +R++ +N Sbjct: 115 GADVRIVYSVLDAIKIAKDD--KESIFFGVGFETTAPAT---LGPISSRNLPENLSLVIA 169 Query: 175 HITLIPTLRSLLEQ-PDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLL 233 H P +R +LE P + I +APGHVS + G DA+ F+A ++ P+VV+GFEP+D+L Sbjct: 170 HRLTPPIMRYVLENYPGSPIRGIIAPGHVSTITGADAWRFVAEEYGIPIVVSGFEPIDVL 229 Query: 234 QGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGV 293 ++ +V+Q +K+ N+Y R V +GN A + + + V D+ WRG+G + SG+ Sbjct: 230 LSILEIVKQIDRGEAKLFNEYSRAVKASGNERALKVMEETSDVV-DAAWRGIGFVPKSGL 288 Query: 294 HLTPDYQRFDAEAHF---RPAPQQVCDD--PRARCGEVLTGKCKPHQCPLFGNTCNPQTA 348 L Y+R+DA + + ++ +D P +C E+ G KP +CPLF C P++ Sbjct: 289 ILKEKYERYDAFRKYGIKEISKEEWYNDSIPGCKCTEITLGIAKPTECPLFMKVCKPESP 348 Query: 349 FGALMVSSEGACAAWYQYRQQE 370 +G MVS EG C W +Y E Sbjct: 349 YGPCMVSGEGTCLIWAKYGSSE 370 >UniRef50_A1SU74 Hydrogenase formation HypD protein n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SU74_PSYIN Length = 372 Score = 250 bits (638), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 132/367 (35%), Positives = 196/367 (53%), Gaps = 13/367 (3%) Query: 5 DEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFI 64 D ++ E V +L + ++ A+ ++ PL+IM +CGGH +AI ++ + Q LP +++ I Sbjct: 10 DAFKDREIVNKLAQEIKLIAAQMA-----PLKIMHICGGHENAIVRYAIRQFLPAHIKVI 64 Query: 65 HGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYS 124 GPGCPVCV P+ ID + +A P+V TFGD +RVP SL +A+ G V++VYS Sbjct: 65 AGPGCPVCVCPVESIDEAITLALLPKVTLLTFGDILRVPATNSSLEEARVNGGSVKVVYS 124 Query: 125 PMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRS 184 P+DA+K AQ++P + VFF +GFETT A + + N +F + + P L+ Sbjct: 125 PLDAIKFAQDSPQQTFVFFSVGFETTAAGIAGLIHSGVPK---NLFFLIANRYMPPVLKL 181 Query: 185 LLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKI 244 L+E D+ + FL GH + + G Y+F+ +F P AGFEP+D+L + L+ Sbjct: 182 LMEVHDDSLQGFLLAGHATAITGLGVYDFMRDEFKLPCATAGFEPVDILLAIRELLTLIK 241 Query: 245 AAHSKVENQYRRVVPDAGNLLAQQAIADVF-CVNGDSEWRGLGVIESSGVHLTPDYQRFD 303 +V N Y RV+ + GNL AQQ + +VF + G WRG+ +E S L Y D Sbjct: 242 NDQHQVINCYSRVIKNEGNLKAQQCLKEVFDLIPG--VWRGIDKVEDSAYVLKDKYAFLD 299 Query: 304 AEAHF--RPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACA 361 A +P P C V+ G+ +P C LF C P FG MVS EG C Sbjct: 300 ARKQLACKPPYSPQAHHPSCLCHRVMLGEVEPQDCKLFKKACTPSKPFGPCMVSPEGTCH 359 Query: 362 AWYQYRQ 368 Y Y + Sbjct: 360 VRYSYSE 366 >UniRef50_C9LR02 Hydrogenase expression/formation protein HypD n=1 Tax=Dialister invisus DSM 15470 RepID=C9LR02_9FIRM Length = 349 Score = 243 bits (620), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 137/349 (39%), Positives = 185/349 (53%), Gaps = 19/349 (5%) Query: 15 QLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVL 74 ++I LRE RP++IMEVCG HT A++K GL Q+L ++ + GPGCPVCV Sbjct: 5 EIIRWLREYDG-------RPVKIMEVCGTHTSALYKTGLRQILSPKIQLLSGPGCPVCVT 57 Query: 75 PMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQE 134 P ID VEI+ FGD + VPG + SL +A+ RGA V Y+P DALK A+E Sbjct: 58 PTAYIDKLVEISFRGGHRVLAFGDMLAVPGTEMSLAEARDRGASVDFFYNPEDALKKAEE 117 Query: 135 NPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGID 194 V +GFETT P A +++A R + N T+ TL L + ID Sbjct: 118 EKETIFVLAAVGFETTAPVWATVVKEADERHISNLKLLTALKTMPETLGELCTAGN--ID 175 Query: 195 AFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQY 254 FL PGHV+++ G + Y ++ + +P+V+ GF LL V LV N Y Sbjct: 176 GFLCPGHVAVITGAERYRALSETYGKPMVIGGFTADLLLSAVARLVLAVNKGQGGFWNDY 235 Query: 255 RRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQ 314 VV + GN+ A + + F GD+ WRGLGV+++SGV+L Y +DA + Sbjct: 236 GSVVTEKGNVKAWERVGAFF-EKGDALWRGLGVVKNSGVYLKEKYHLYDA------GSRG 288 Query: 315 VCDD---PRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGAC 360 + +D RCG +L GK P CP FG TC P GA MVSSEGAC Sbjct: 289 LVEDHIPAGCRCGNILLGKNMPKDCPHFGRTCTPSHPVGACMVSSEGAC 337 >UniRef50_A4YFA0 Hydrogenase formation HypD protein n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YFA0_METS5 Length = 375 Score = 238 bits (606), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 133/370 (35%), Positives = 191/370 (51%), Gaps = 12/370 (3%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 + + YR P L + LR R L+ + + IM VCG H I +G+ LLPEN Sbjct: 5 LSLLKYYRDP----TLAKALRLRIEELAKKIQENIMIMHVCGSHEWTITHYGIRSLLPEN 60 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 VE GPGCPVC+ P ID V++A V+ T+GD R G + SL +A+A G DVR Sbjct: 61 VEVRAGPGCPVCITPATDIDDAVKLAMD-GVVVTTYGDMSRARGTKMSLEEARAMGGDVR 119 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 ++Y DA+K+A+ P + +FF +G +TT P TA + + N F + Sbjct: 120 VIYGVQDAVKMARREPNKDFLFFAVGMDTTAPATAFEMMKGVP---DNLSFLVSYRYTPA 176 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 S+++ GIDAF++ GH V G Y +P+V GFEP+D+L + M++ Sbjct: 177 IQGSVMDSNVLGIDAFISAGHSVTVTGLRPYYEYFLRSKKPMVATGFEPIDVLMSIYMIL 236 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 +Q K+EN+Y R V GN+ AQQ + VF + D RG+ V +G L ++ Sbjct: 237 KQIDEGKPKIENEYTRSVTWEGNVKAQQVMERVFDLE-DGYVRGVAVFPKAGFRLKEEFS 295 Query: 301 RFDAEAHFRPAPQQVCDDPR---ARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSE 357 + DA + + D ARCGEV+ G P +CPL+G TC P+ GA MVS E Sbjct: 296 KKDARVQYGLKDRTKSKDEYVAGARCGEVVMGLIDPPECPLYGKTCKPEDPKGAPMVSQE 355 Query: 358 GACAAWYQYR 367 G C W +R Sbjct: 356 GTCWIWATHR 365 >UniRef50_A4XJQ2 Hydrogenase formation HypD protein n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XJQ2_CALS8 Length = 348 Score = 234 bits (597), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 133/353 (37%), Positives = 206/353 (58%), Gaps = 11/353 (3%) Query: 14 MQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCV 73 MQ E + E +++ R L+I+EVCG HT +I+K G + ++FI GPGCPVCV Sbjct: 1 MQTAELIWEIKNNIEKIG-RSLKIIEVCGTHTVSIYKNGFPAVFEGYIDFISGPGCPVCV 59 Query: 74 LPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQ 133 G ID VE++S E TFGD ++VPG SL QA+A G ++++YSP+DA++ + Sbjct: 60 THEGYIDRLVELSS--EWTIYTFGDLLKVPGSSKSLSQARANGGKIKVMYSPVDAVEHLE 117 Query: 134 ENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGI 193 N KV+F +GFETT P A++L++ + ++N F C+ T+ L+S L Q + Sbjct: 118 NN--EKVIFAAVGFETTAPAFALSLEKVIEKGLKNVKFACELKTIDEPLKSFL-QNHIRV 174 Query: 194 DAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQ 253 D + PGHV+ VIG D + F+ F V++GFE D+L ++ + Q ++ V+N+ Sbjct: 175 DGIILPGHVATVIGVDGFKFVER-FKVASVISGFEGYDILLSLLSITQDILSEDFTVKNE 233 Query: 254 YRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQ 313 Y+RVV GN++A+ I F + +RGLG+I G+ + ++ + + + Q Sbjct: 234 YKRVVKKEGNVIAKGYIEKYF-ERTSAFFRGLGLIPGGGLKIKDEFSEYSIDISYDHTKQ 292 Query: 314 QVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQY 366 + D RC +VLTGK KP +CPLF C P + GA MVS EG+C A+++Y Sbjct: 293 K---DSLCRCADVLTGKIKPFECPLFEKVCTPISPKGACMVSQEGSCNAYFRY 342 >UniRef50_B9MR89 Hydrogenase formation HypD protein n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MR89_ANATD Length = 351 Score = 233 bits (595), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 132/334 (39%), Positives = 203/334 (60%), Gaps = 9/334 (2%) Query: 33 RPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVI 92 R LRI+EVCG HT +I++ G L ++FI GPGCPVCV G ID +E+A I Sbjct: 23 RQLRIIEVCGTHTVSIYRNGFHSLFKGYIDFISGPGCPVCVTHEGYIDNLIELAKMNYTI 82 Query: 93 FCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMP 152 + TFGD M+VPGK SL +AKA+G ++I+YSP+DA++ E+ + + +GFETT+P Sbjct: 83 Y-TFGDLMKVPGKSMSLAEAKAKGGKIKIMYSPVDAVENIAED--EEAIIAAVGFETTVP 139 Query: 153 TTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYN 212 A++L++ +D++N F C+ T+ L+ LL+ +D + PGHV+ ++G D + Sbjct: 140 AFALSLEKVLEKDLKNVKFACELKTIDQPLKVLLKDHIK-VDGLILPGHVATILGVDGFK 198 Query: 213 FIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIAD 272 F+ +F P V++GFE D+L ++ L Q + V+N+Y+R+V GN +A++ I Sbjct: 199 FV-EEFEIPSVISGFEKYDILLSLLSLTQSILDNDFTVKNEYKRIVKKEGNTVAKRYIER 257 Query: 273 VFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCK 332 F D+ +RGLG+IE G+ L +Y F + + + + RC +VLTGK K Sbjct: 258 FF-ERTDAYFRGLGLIEGGGLRLKSEYSSFSVQLKY---DYESFSNSACRCADVLTGKLK 313 Query: 333 PHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQY 366 P +CPLF C PQT GA MVS EG+C A++++ Sbjct: 314 PFECPLFEKVCTPQTPKGACMVSQEGSCNAYFRF 347 >UniRef50_Q2Y8F6 Hydrogenase formation HypD protein n=8 Tax=Proteobacteria RepID=Q2Y8F6_NITMU Length = 385 Score = 233 bits (593), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 137/355 (38%), Positives = 193/355 (54%), Gaps = 20/355 (5%) Query: 32 ERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEV 91 +RP+RIM VCGGH +I G+ LPE VE I GPGCPVCV P + +++A ++ Sbjct: 18 DRPVRIMNVCGGHERSITMAGIRSALPECVELIAGPGCPVCVCPEEDVYQAIQLALRTDM 77 Query: 92 IFCTFGDAMRVP-----GKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLG 146 I TFGD +RVP + SL QAKA GADVR + SP +A+++AQ+N R+VVFF G Sbjct: 78 ILVTFGDMLRVPVNVPKKEVRSLEQAKAAGADVRPIASPREAVRIAQQNAKRQVVFFAAG 137 Query: 147 FETTM-PTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMV 205 FETT P A+ L+ N P + LL+ G D +APGHVS V Sbjct: 138 FETTTAPVAAMLLEGVP----DNLSILLSARRTWPAVAMLLDSDAPGFDGLVAPGHVSTV 193 Query: 206 IGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLL 265 +G + +NF+ P VAGF+P+ LL + +++Q + ++N Y +V GN Sbjct: 194 MGPEEWNFVFEKHDIPTAVAGFQPVSLLAAMYSVLRQLLEGKRFLDNCYPELVRPGGNRA 253 Query: 266 AQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHF-------RPAPQQVCDD 318 AQ +A+ + D+ WRG+GVI SSG L + + DA F R Q+ Sbjct: 254 AQAQLAEALN-DTDANWRGIGVIPSSGFSLQKRFAKNDARLQFPDFDTENRKRAGQM--P 310 Query: 319 PRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQESEA 373 P C V+ G+ P+QC ++G+ C P+T G MVS EGAC W+ +E+ A Sbjct: 311 PGCECASVVLGRINPNQCKIYGHACTPKTPVGPCMVSDEGACRIWWAAGVRENTA 365 >UniRef50_UPI00019137D4 hydrogenase expression/formation protein HypD n=5 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI00019137D4 Length = 114 Score = 229 bits (585), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 106/113 (93%), Positives = 110/113 (97%) Query: 260 DAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDP 319 DAGN+LAQQAIADVFCVNGDSEWRGLGVIESSGVHLTP+YQRFDAEAHFRPAPQQV DDP Sbjct: 1 DAGNMLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPEYQRFDAEAHFRPAPQQVYDDP 60 Query: 320 RARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQESE 372 RARCGEVLTG+CKPHQCPLFG TCNP+TAFGALMVSSEGACAAWYQYRQQE E Sbjct: 61 RARCGEVLTGRCKPHQCPLFGKTCNPETAFGALMVSSEGACAAWYQYRQQECE 113 >UniRef50_A7H7N4 Hydrogenase formation HypD protein n=5 Tax=cellular organisms RepID=A7H7N4_ANADF Length = 379 Score = 228 bits (581), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 137/368 (37%), Positives = 194/368 (52%), Gaps = 17/368 (4%) Query: 6 EYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIH 65 ++R P + L E + + R + +M VCG H AI +FGL +LP +E I Sbjct: 11 KFRDPVRARALAEAIAREVDAIG----RTVPVMHVCGSHEQAIARFGLRAVLPPGLELIM 66 Query: 66 GPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSP 125 GPGCPVCV +D V +A + CT+GD +R+PG SL A+A GA V +VYS Sbjct: 67 GPGCPVCVTDGPEVDEAVALALQGARV-CTYGDMLRLPGTARSLADAQADGAKVEVVYSV 125 Query: 126 MDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSL 185 A++LAQ++P +VVF G GFETT TA + + NF H + + + Sbjct: 126 SQAVELAQKHPEDEVVFLGSGFETTAVATAAVALASPPK---NFSILSVHKYVPAAMNVV 182 Query: 186 LEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIA 245 E P I+ ++A GH +++ G + A+ +P+VVAGFEPLD+L ++ LV+ Sbjct: 183 AESPQTNIEGYIAAGHAAIITGWGIFEPFAARTGKPVVVAGFEPLDILAAILQLVELMRQ 242 Query: 246 AHSKVENQYRRVVPDAGNLLAQQAIADVF-CVNGDSEWRGLGVIESSGVHLTPDYQRFDA 304 ++V N Y R V GNL AQ+++ VF V G WRG+ + + L P+Y DA Sbjct: 243 GKAEVANVYPRCVTKEGNLPAQRSLWKVFRPVTGT--WRGIAEVRDGNLDLRPEYAHLDA 300 Query: 305 EAHFR--PAPQQVCDDPRAR----CGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEG 358 FR AP + D A CG ++ G P C LFG TC P++ GA MVSSEG Sbjct: 301 RKRFRIDTAPVRDEDAEEAAKGCICGSIMLGLANPGDCALFGKTCVPESPVGACMVSSEG 360 Query: 359 ACAAWYQY 366 C W+ Y Sbjct: 361 QCRIWHTY 368 >UniRef50_Q8TYR6 Hydrogenase maturation factor n=1 Tax=Methanopyrus kandleri RepID=Q8TYR6_METKA Length = 350 Score = 217 bits (553), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 134/353 (37%), Positives = 177/353 (50%), Gaps = 13/353 (3%) Query: 15 QLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVL 74 + + L R + T +R + IM VCG H I + GL LLPENV + GPGCPVCV Sbjct: 7 EFVRKLVRRIHKEAETLDRDVTIMHVCGSHERTIVEHGLRSLLPENVRLVCGPGCPVCVT 66 Query: 75 PMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQE 134 G + ++ A+ ++ C FGD RVP GSL DVR+V S A ++A E Sbjct: 67 TTGELAAAIK-AAEDGMVVCAFGDVYRVPTPVGSLSSCD---GDVRVVQSVRKAEEIA-E 121 Query: 135 NPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGID 194 + R V++ +GFETT PTTA L NFY H + P + LLE + +D Sbjct: 122 SEDRDVLYLAVGFETTAPTTAAVLLDDPP---SNFYVLSAHRLIPPAMEWLLESGECRLD 178 Query: 195 AFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQY 254 AF+ PGHVS +IGT Y +A + P VVAGFEP D+L V+ ++ V N+Y Sbjct: 179 AFICPGHVSTIIGTGPYESVAREL--PCVVAGFEPEDVLIAVLACLKMLRRGRVGVTNEY 236 Query: 255 RRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDA-EAHFRPAPQ 313 R V D GN +A++ + F D WRG I S + L D DA E RP Sbjct: 237 LRAVEDRGNPVAKELMERAF-EPEDRPWRGFPTIPESALKLREDLADHDAIEIGIRPD-Y 294 Query: 314 QVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQY 366 + D C +L G +P CPLFG C P G MVS EG C Y++ Sbjct: 295 TLGHDESCICDRILRGLAEPRDCPLFGTKCTPTDPVGPCMVSEEGPCFIEYRF 347 >UniRef50_Q8NKV0 Membrane-bound NiFe hydrogenase n=1 Tax=Acidianus ambivalens RepID=Q8NKV0_ACIAM Length = 394 Score = 217 bits (552), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 133/374 (35%), Positives = 193/374 (51%), Gaps = 19/374 (5%) Query: 11 EQVMQLIEHLRERASHLSYTAER-PLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGC 69 E + E + + A +S R ++IM CG H +GL L+PE VE I GPGC Sbjct: 16 ELAKSITEQIHKLAPIVSKEIGREKIKIMNFCGSHEWVTTHYGLRALMPETVELIPGPGC 75 Query: 70 PVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQ------GSLLQAKARGADVRIVY 123 PVCV P I+ +++A ++ TFG K GSL A+A GADVRIVY Sbjct: 76 PVCVTPSSDIENVIKLAMEGYTVY-TFGMFQVTTVKHYKKDEVGSLAAARALGADVRIVY 134 Query: 124 SPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLR 183 S +DA++ A+++ + VFFG+GFETT P+ A+ ++ K +N F+ P Sbjct: 135 SFVDAIEDAKKS-GKPSVFFGIGFETTTPSYAVLFEKEKVP--KNLLFYSSLKLTAPAAE 191 Query: 184 -SLLEQPDNG---IDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVML 239 ++ G + + PGHVS +IG +++F ++ P VV GFEP+D+L GV+ + Sbjct: 192 FAVRLHKSKGLVPVSGVIGPGHVSSIIGAISWDFFPREYKIPAVVTGFEPIDVLAGVLKI 251 Query: 240 VQQKIAAHSKVEN-QYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPD 298 +Q + N +Y+RVV GN+ AQ I VF + D+ WRG+G I SG+ L + Sbjct: 252 LQDLHSGDITYTNLEYKRVVKYQGNVYAQVEINKVFKLV-DAIWRGIGSIPKSGLDLREE 310 Query: 299 YQRFDAEAHF--RPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSS 356 Y ++A + P P RC EV G P CP+F C P +G MVS Sbjct: 311 YSMYNAREQLGIKEKPWDYDLPPGCRCNEVTLGIAYPTDCPMFMKACTPARPWGPCMVSM 370 Query: 357 EGACAAWYQYRQQE 370 EGACA W ++ E Sbjct: 371 EGACAVWARFGSTE 384 >UniRef50_Q6API1 Related to hydrogenase isoenzymes formation protein n=1 Tax=Desulfotalea psychrophila RepID=Q6API1_DESPS Length = 368 Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 120/372 (32%), Positives = 189/372 (50%), Gaps = 12/372 (3%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M +++ +PE +++ L +P+R+M VCG H AI ++G+ + LP+ Sbjct: 1 MDVINQLPSPEALLE----------ELHRVVSKPIRLMVVCGTHNRAILRYGIREELPDF 50 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGAD-V 119 +E + GPGC VCV+P G +D V++A P+VI T D ++V G + SL G V Sbjct: 51 IELVAGPGCSVCVMPTGHVDAFVKVARQPDVITATCEDLLKVRGSKESLADVLNEGVHRV 110 Query: 120 RIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLI 179 I+ SP AL+LA + VV+ +GFE T P+ A T+ +A V NF L Sbjct: 111 EIISSPRQALELAYVEEDKIVVYPAVGFEATAPSIAETILEAAQNGVGNFCVIPSIRLLP 170 Query: 180 PTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVML 239 PT+ +LL P I L H++ + T+AY +A +AGFE ++LQG++ + Sbjct: 171 PTIDALLLDPQLSIQGLLCSDHINTISDTEAYADLARKHSLSCCIAGFEKAEILQGILSM 230 Query: 240 VQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDY 299 V+Q S V+ V A++ + +VF ++ WRGLG I SG + + Sbjct: 231 VKQIHRGESMVDASGAMVYSMEETARARRVVEEVF-FPTETAWRGLGSIAESGFVIRDEL 289 Query: 300 QRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGA 359 +DA F + D C E+++G+ P CP FG C Q G M+S+EG Sbjct: 290 ALYDATKRFNVRFAEGTDQCMCHCNEIISGRALPPDCPAFGMACTLQNPVGPCMISNEGI 349 Query: 360 CAAWYQYRQQES 371 CAA+++Y+ + S Sbjct: 350 CAAYFKYKLESS 361 >UniRef50_B4S326 Hydrogenase formation HypD protein n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4S326_ALTMD Length = 377 Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 130/367 (35%), Positives = 182/367 (49%), Gaps = 16/367 (4%) Query: 14 MQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCV 73 M +E L + S + +P RI+ VCGGH AI + G L N+ I GPGCPVC+ Sbjct: 1 MYSVESLLRDIKNTSLS--KPFRILNVCGGHERAITRAGFRTLFQHNIHLIPGPGCPVCI 58 Query: 74 LPMGRIDTCVEIASHPEVIFCTFGDAMRVP-----GKQGSLLQAKARGADVRIVYSPMDA 128 P I + +A + V+ +FGD +RVP G SL+ AK +GAD+R + SP +A Sbjct: 59 CPEEDIAYAIHLAINENVVIVSFGDMLRVPVEHEMGGCSSLIDAKNQGADIRPISSPQEA 118 Query: 129 LKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQ 188 + +A E P + +VFF +GFETTM A TL NF P + +LE Sbjct: 119 VSIALEEPRKVIVFFAVGFETTMAPIAATLLNDLP---NNFKVLLSGRLTWPAVAHVLES 175 Query: 189 PDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHS 248 N DA +APGHV+ ++G++ + F + P+ +AGF P LL + L+ Sbjct: 176 QPNTFDALIAPGHVATIMGSEEWQFAIDHHNLPVSIAGFHPESLLLSLQTLLGNCSNKVV 235 Query: 249 KVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHF 308 + N+Y VV GN A+ I F + D+ WRG+GVI SG DA + Sbjct: 236 TLSNRYPEVVKQNGNAAAKAIINKAFTIV-DAHWRGIGVIPGSGFSFASRLSHLDATNDY 294 Query: 309 RPA--PQQVCDD---PRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAW 363 P P Q + + C +V+ GK P CP FG C P + GA MVS EGAC W Sbjct: 295 APVDFPSQCAQNVPETTSPCEKVILGKMAPDACPFFGQECKPASPKGACMVSDEGACRIW 354 Query: 364 YQYRQQE 370 Y ++ Sbjct: 355 YSSGERS 361 >UniRef50_A1S0N0 Hydrogenase formation HypD protein n=6 Tax=Thermoprotei RepID=A1S0N0_THEPD Length = 411 Score = 210 bits (534), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 124/345 (35%), Positives = 181/345 (52%), Gaps = 16/345 (4%) Query: 35 LRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFC 94 ++IM+ CG H I FGL L+PE VE + GPGCPVCV P I+ +E++ ++ Sbjct: 50 IKIMDFCGTHEWTIVHFGLRSLMPEGVELVAGPGCPVCVTPSWYIERAIELSLSGVTVY- 108 Query: 95 TFGDAMRVPGKQ-----GSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFET 149 T+GD ++ SL +A+A G VR+V S +DA++ A + V F G+GFET Sbjct: 109 TYGDTFKLRAVNPVDGVSSLEEARAAGGRVRLVVSLVDAVRDASRHGGESV-FLGIGFET 167 Query: 150 TMPTTAITLQQAKARDVQNFYFFCQHI--TLIPTLRSLLEQP-DNGIDAFLAPGHVSMVI 206 P A + + + + +L L ++P + + +APGHVS V Sbjct: 168 VAPGYARAVVSGSLPENLKLMSLVKLTPPAMFYSLDILRDKPTEPPVMGVIAPGHVSTVT 227 Query: 207 GTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLA 266 G A+ +A F P+VV+GFEP+D+L G+ +++Q V+ +Y R V G+L A Sbjct: 228 GAKAWEPVAEQFQVPVVVSGFEPIDVLMGIAEIMRQLARGEYGVKVEYTRAVTWEGDLEA 287 Query: 267 QQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHF---RPAPQQVCDD--PRA 321 Q AI + F D+ WRG+G + SG+ L Y R DA HF P++ D P Sbjct: 288 QAAIHEAFEAVDDA-WRGIGFLPLSGLRLREKYGRLDALRHFGIEELTPEKWRKDTPPGC 346 Query: 322 RCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQY 366 RC EV GK KP CP+F C P+ +G MVS EG CA W ++ Sbjct: 347 RCAEVTLGKAKPTDCPMFMKKCTPEKPYGPCMVSLEGTCAVWARF 391 >UniRef50_A0L606 Hydrogenase formation HypD protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L606_MAGSM Length = 366 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 108/349 (30%), Positives = 169/349 (48%), Gaps = 18/349 (5%) Query: 34 PLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIF 93 P+++M +CGG + Q L V + GPGCPVCV P I + +A +VI Sbjct: 21 PIKVMNLCGGFARFWAESDWHQSLSRVVHIMPGPGCPVCVCPEAEIRAAMHLAVREDVIL 80 Query: 94 CTFGDAMRVPGKQG-----SLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFE 148 FGD + VP G +L A+ GADV V +P +A++LA +PTR+VVFF GFE Sbjct: 81 AAFGDMLSVPISYGAAGYATLDGARQDGADVVAVANPHEAVELALRHPTREVVFFASGFE 140 Query: 149 TTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNG-IDAFLAPGHVSMVIG 207 T +A Q A NF P + ++L Q + A +APGHV+ ++G Sbjct: 141 T---VSAPLAAQFLAGVPDNFSILNALRLSWPVVDTMLSQHERRPFKAIIAPGHVAAIVG 197 Query: 208 TDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQ 267 ++ + F + + P+ ++GF L + +V+Q ++ +++ Q + GNL A Sbjct: 198 SECWRFAVTQYGIPVSISGFSDRSFLASLDTVVRQVVSGKPQLDIQEPYRINPRGNLYAL 257 Query: 268 QAIADVFCVNGDSEWRGLGVIESSGVHLTPDY------QRFDAEAHFRPAPQQVCDDPRA 321 + +VF V WRG+G + SG L + +RF A A F+P + +D Sbjct: 258 TCVNNVFDVQS-VHWRGIGRVPDSGYALREAWHHRDARKRFHALATFQPEMGDMPND--C 314 Query: 322 RCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQE 370 C ++ GK PH C + + C P G M S +GAC ++ + E Sbjct: 315 LCASIVMGKQSPHDCLRYAHDCQPDNPVGPCMASVDGACRIMWERQHSE 363 >UniRef50_B9Y0D1 Putative uncharacterized protein n=1 Tax=Helicobacter pylori B128 RepID=B9Y0D1_HELPY Length = 221 Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 116/196 (59%), Gaps = 2/196 (1%) Query: 154 TAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNF 213 +A L AK ++N +F HI + P++ ++L+ P I+A LAP HVS++ G Y+ Sbjct: 2 SASVLLNAKKEKLKNLFFHINHILVPPSVSAILKDPACQINALLAPSHVSVISGAQIYSP 61 Query: 214 IASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADV 273 + F P++V+GFEP+D+L+ V+ML++Q + +K+E QY+R V GN+ AQ + Sbjct: 62 LVDRFKLPIIVSGFEPVDILESVLMLLKQALNKEAKLEIQYKRAVSFEGNVKAQALVNAC 121 Query: 274 FCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRP--APQQVCDDPRARCGEVLTGKC 331 V + EWRGLG I+ S + L + +DAE F+ + + + ++ +CGE+L G Sbjct: 122 MEVRENFEWRGLGNIKRSALKLKEAFASYDAEKVFKEYLSHKIIKENKACKCGEILKGIA 181 Query: 332 KPHQCPLFGNTCNPQT 347 KP C LF TC P+T Sbjct: 182 KPLDCSLFATTCTPKT 197 >UniRef50_Q9REL6 Hydrogenase maturating protein HypD (Fragment) n=1 Tax=Rhodobacter sphaeroides RepID=Q9REL6_RHOSH Length = 123 Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 65/123 (52%), Positives = 85/123 (69%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M+F E+R P L+ + RA + T RPL IME+CGGHTHAIF++GLD+L+ E Sbjct: 1 MKFASEFRDPALARSLLAAIAARADEMGATRARPLHIMEICGGHTHAIFRYGLDRLVHEG 60 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 +EFIHGPGCPVCVLP+ + + I P +I TF + +PG +GSLLQAKARGAD+R Sbjct: 61 IEFIHGPGCPVCVLPIPPLHQSIPIPHPPHLILTTFPHPIPLPGARGSLLQAKARGADIR 120 Query: 121 IVY 123 +VY Sbjct: 121 MVY 123 >UniRef50_UPI000190C3BE hydrogenase expression/formation protein HypD n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. 404ty RepID=UPI000190C3BE Length = 63 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 39/42 (92%), Positives = 40/42 (95%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCG 42 MRFVDEYRAPEQVMQLIEHLRERA+ L YTAERPLRIMEVCG Sbjct: 1 MRFVDEYRAPEQVMQLIEHLRERAALLPYTAERPLRIMEVCG 42 >UniRef50_Q1AUA4 Hydrogenase maturation factor-like protein n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AUA4_RUBXD Length = 134 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 45/70 (64%) Query: 205 VIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNL 264 +IG Y F+ +D+ +P VVAGFEPLD+LQ ++M +VENQ RVV GNL Sbjct: 1 MIGYRPYEFMPADYGKPCVVAGFEPLDILQAILMNHAPLAEGRCEVENQDSRVVSWEGNL 60 Query: 265 LAQQAIADVF 274 A +++A+VF Sbjct: 61 SALRSMAEVF 70 >UniRef50_UPI0001699500 Hydrogenase formation HypD protein n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699500 Length = 121 Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 37/59 (62%) Query: 35 LRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIF 93 +RIM VCGGH +I + GL LP N+E I GPGCPVCV P + +++A + VI Sbjct: 33 VRIMNVCGGHERSITQAGLRAALPRNIELIPGPGCPVCVCPEEDVYQAIQLALNESVIL 91 >UniRef50_Q111Q4 Hydrogenase isoenzyme formation protein HypD n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q111Q4_TRIEI Length = 93 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 38 MEVCGGHTHAIF-KFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTF 96 M VC ++ I K+ L+ + +EF+ G G L RID + ++ E+IF T Sbjct: 1 MPVCAPNSLVIVAKYNLNTIECGYLEFLQGYGEASWSLAPQRIDHAIALSQKTEIIFTTC 60 Query: 97 GDAMRVPGKQGSLLQAKARGADVRIVYSPMDAL 129 A G Q +L +AK +GAD++I+ SP AL Sbjct: 61 EAANSYCGSQQNLAEAKTQGADIQIISSPQQAL 93 >UniRef50_Q111Q5 Hydrogenase formation HypD protein n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q111Q5_TRIEI Length = 62 Score = 42.7 bits (99), Expect = 0.019, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 36/62 (58%) Query: 179 IPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVM 238 +PTL+++++ ID F+AP + + Y F+ + +PLVVA P+ +L+ +M Sbjct: 1 MPTLKAIMDSRILPIDGFIAPAQLIATFELEPYQFLVGYYCKPLVVAEVTPISMLKAKLM 60 Query: 239 LV 240 L+ Sbjct: 61 LL 62 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q9EYH5 HypD-like protein n=24 Tax=Bacteria RepID=Q9EYH5... 576 e-163 UniRef50_B8I6F4 Hydrogenase expression/formation protein HypD n=... 546 e-154 UniRef50_P31903 Hydrogenase expression/formation protein hypD n=... 542 e-153 UniRef50_Q2SQT0 Hydrogenase expression/formation protein HypD n=... 538 e-151 UniRef50_A5FPQ9 Hydrogenase expression/formation protein HypD n=... 535 e-150 UniRef50_B8D1S3 Hydrogenase formation HypD protein n=1 Tax=Halot... 532 e-150 UniRef50_B8FG27 Hydrogenase expression/formation protein HypD n=... 532 e-150 UniRef50_Q1LNV9 Hydrogenase expression/formation protein HypD n=... 532 e-150 UniRef50_Q31DZ2 Hydrogenase expression/formation protein hypD n=... 527 e-148 UniRef50_C8WJD4 Hydrogenase expression/formation protein HypD n=... 526 e-148 UniRef50_Q0RN44 Hydrogenase expression/formation protein n=74 Ta... 523 e-147 UniRef50_B8FQW4 Hydrogenase expression/formation protein HypD n=... 520 e-146 UniRef50_Q2RGH3 Hydrogenase expression/formation protein HypD n=... 518 e-145 UniRef50_A9Y8W2 Hydrogenase formation HypD protein n=3 Tax=Desul... 517 e-145 UniRef50_C1TK22 Hydrogenase expression/formation protein HypD n=... 515 e-144 UniRef50_B7B8S5 Putative uncharacterized protein n=1 Tax=Parabac... 513 e-144 UniRef50_B0TCN3 Hydrogenase expression/formation protein hypd n=... 513 e-144 UniRef50_C4KD97 Hydrogenase expression/formation protein HypD n=... 508 e-142 UniRef50_B5YB75 Hydrogenase expression/formation protein HypD n=... 508 e-142 UniRef50_B2TM77 Hydrogenase isoenzymes formation protein HypD n=... 507 e-142 UniRef50_C5RHD4 Hydrogenase formation HypD protein n=1 Tax=Clost... 504 e-141 UniRef50_Q5H7P6 Hydrogenase expression/formation protein HypD n=... 501 e-140 UniRef50_C6QQX3 Hydrogenase formation HypD protein n=2 Tax=Bacil... 501 e-140 UniRef50_D1BLR9 Hydrogenase formation HypD protein n=5 Tax=Veill... 498 e-139 UniRef50_Q58400 Putative hydrogenase expression/formation protei... 498 e-139 UniRef50_C5A3E4 [NiFe] hydrogenase maturation protein (HypD) n=4... 497 e-139 UniRef50_D1PPE6 Hydrogenase expression/formation protein HypD n=... 496 e-139 UniRef50_A6LXR6 Hydrogenase formation HypD protein n=9 Tax=Clost... 495 e-139 UniRef50_C6PPY9 Hydrogenase formation HypD protein n=6 Tax=Clost... 494 e-138 UniRef50_Q1NML6 Hydrogenase formation HypD protein n=4 Tax=Prote... 494 e-138 UniRef50_Q3ABW4 Hydrogenase expression/formation protein HypD n=... 493 e-138 UniRef50_D1Y5N2 Hydrogenase expression/formation protein HypD n=... 490 e-137 UniRef50_Q0W4N4 Hydrogenase expression/formation protein (Matura... 488 e-136 UniRef50_C1SHT6 Hydrogenase maturation factor n=1 Tax=Denitrovib... 485 e-135 UniRef50_B5Y919 Hydrogenase expression/formation protein HypD n=... 484 e-135 UniRef50_Q46BF2 Hydrogenase expression/formation protein n=8 Tax... 484 e-135 UniRef50_A5ULS2 Hydrogenase expression/formation protein, HypD n... 481 e-134 UniRef50_B2KBC4 Hydrogenase formation HypD protein n=1 Tax=Elusi... 480 e-134 UniRef50_B1L5X9 Hydrogenase maturation factor n=4 Tax=Archaea Re... 476 e-133 UniRef50_C9KK61 Hydrogenase expression/formation protein HypD n=... 476 e-133 UniRef50_O28901 Hydrogenase expression/formation protein (HypD) ... 474 e-132 UniRef50_A3DJT1 Hydrogenase formation HypD protein n=4 Tax=Clost... 473 e-132 UniRef50_A1SU74 Hydrogenase formation HypD protein n=1 Tax=Psych... 463 e-129 UniRef50_A4YFA0 Hydrogenase formation HypD protein n=1 Tax=Metal... 459 e-128 UniRef50_C5CEU3 Hydrogenase formation HypD protein n=1 Tax=Kosmo... 450 e-125 UniRef50_Q2Y8F6 Hydrogenase formation HypD protein n=8 Tax=Prote... 446 e-124 UniRef50_Q6API1 Related to hydrogenase isoenzymes formation prot... 443 e-123 UniRef50_A7H7N4 Hydrogenase formation HypD protein n=5 Tax=cellu... 442 e-123 UniRef50_Q8NKV0 Membrane-bound NiFe hydrogenase n=1 Tax=Acidianu... 440 e-122 UniRef50_Q8TYR6 Hydrogenase maturation factor n=1 Tax=Methanopyr... 439 e-122 UniRef50_C9LR02 Hydrogenase expression/formation protein HypD n=... 436 e-121 UniRef50_A1S0N0 Hydrogenase formation HypD protein n=6 Tax=Therm... 433 e-120 UniRef50_A4XJQ2 Hydrogenase formation HypD protein n=1 Tax=Caldi... 416 e-114 UniRef50_B9MR89 Hydrogenase formation HypD protein n=1 Tax=Anaer... 402 e-110 UniRef50_B4S326 Hydrogenase formation HypD protein n=1 Tax=Alter... 401 e-110 UniRef50_A0L606 Hydrogenase formation HypD protein n=1 Tax=Magne... 391 e-107 UniRef50_B9Y0D1 Putative uncharacterized protein n=1 Tax=Helicob... 258 2e-67 UniRef50_UPI00019137D4 hydrogenase expression/formation protein ... 184 5e-45 UniRef50_Q9REL6 Hydrogenase maturating protein HypD (Fragment) n... 161 5e-38 UniRef50_Q111Q4 Hydrogenase isoenzyme formation protein HypD n=1... 113 1e-23 UniRef50_Q1AUA4 Hydrogenase maturation factor-like protein n=1 T... 100 1e-19 UniRef50_UPI0001699500 Hydrogenase formation HypD protein n=1 Ta... 99 3e-19 UniRef50_UPI000190C3BE hydrogenase expression/formation protein ... 57 1e-06 Sequences not found previously or not previously below threshold: UniRef50_Q9ZKV1 Putative n=2 Tax=Helicobacter pylori RepID=Q9ZKV... 60 1e-07 UniRef50_Q111Q5 Hydrogenase formation HypD protein n=1 Tax=Trich... 50 2e-04 UniRef50_A9G700 Beta-glucosidase n=3 Tax=cellular organisms RepI... 46 0.004 UniRef50_UPI0001AF6C89 hypothetical protein MkanA1_17326 n=1 Tax... 43 0.018 UniRef50_C0AYY9 Putative uncharacterized protein n=1 Tax=Proteus... 42 0.040 >UniRef50_Q9EYH5 HypD-like protein n=24 Tax=Bacteria RepID=Q9EYH5_NOSP7 Length = 392 Score = 576 bits (1485), Expect = e-163, Method: Composition-based stats. Identities = 194/373 (52%), Positives = 270/373 (72%), Gaps = 4/373 (1%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M++VDE+R PE+ E L + LS+ E+P++IMEVCGGHTH+IFK+G++++LP+ Sbjct: 1 MKYVDEFREPEKA----EALCREITKLSHQLEKPIKIMEVCGGHTHSIFKYGIEEILPQT 56 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 +E IHGPGCPVCV+P GR+D + I+ + VIF TFGDAMRVPG + SLLQA+A+GAD+R Sbjct: 57 IELIHGPGCPVCVMPKGRLDDAIAISQNHNVIFATFGDAMRVPGSKTSLLQARAQGADIR 116 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 +VYSP+D+L++A+++P R+VVFF LGFETT P+T T+ QA A ++ NF F H+ +IP Sbjct: 117 MVYSPLDSLQIAKDHPDREVVFFALGFETTAPSTGFTIVQAAAEEIHNFSMFSNHVLVIP 176 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 L++LL+ PD +D F+ PGHVSMVIG+D Y FI+ +++P+VV+GFEPLD+LQ + ML+ Sbjct: 177 ALKALLDNPDLQLDGFVGPGHVSMVIGSDPYQFISQQYNKPIVVSGFEPLDILQSIWMLL 236 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 QQ + +VENQY R+V +GN +A QAI VF V +WRGLG I SG+ + P+Y Sbjct: 237 QQIVENRCEVENQYNRIVQKSGNTVALQAINKVFAVRDSFDWRGLGDIPYSGLKIKPEYA 296 Query: 301 RFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGAC 360 +FDAE F +V D +CGE+L G KP +C +FG C P+T G MVSSEGAC Sbjct: 297 QFDAELKFTIPNLKVADHKACKCGEILKGVLKPWECKVFGTACTPETPIGTCMVSSEGAC 356 Query: 361 AAWYQYRQQESEA 373 AA+Y+Y + + A Sbjct: 357 AAYYKYGRLSTIA 369 >UniRef50_B8I6F4 Hydrogenase expression/formation protein HypD n=4 Tax=Clostridium RepID=B8I6F4_CLOCE Length = 361 Score = 546 bits (1407), Expect = e-154, Method: Composition-based stats. Identities = 154/367 (41%), Positives = 229/367 (62%), Gaps = 8/367 (2%) Query: 2 RFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENV 61 ++D++R E + ++++ L+ + L+IMEVCG HT AI ++GL LLP + Sbjct: 3 NYIDDFRDSEVISRIVQSLQGYS-------GPKLKIMEVCGTHTMAISRYGLRSLLPRQI 55 Query: 62 EFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRI 121 E + GPGCPVCV P ID+ E+A VI TFGD MRVPG +LL KA+G++V++ Sbjct: 56 ELVSGPGCPVCVTPTSYIDSATELADSKNVIITTFGDMMRVPGNNSTLLHKKAQGSNVQM 115 Query: 122 VYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPT 181 VYSP++A++LA+ NP ++VVF +GFETT P A+++ +AK+ ++N+ + T+ Sbjct: 116 VYSPLNAVELARNNPDKEVVFLSVGFETTTPVIALSVLKAKSEGIKNYSVLTANKTMPEA 175 Query: 182 LRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQ 241 +++L + + ID FL PGHVS +IGTD ++++A + + VVAGFEPLD+L + +LV Sbjct: 176 IKALADDKELQIDGFLYPGHVSAIIGTDFFSYVAYNMEKAGVVAGFEPLDILYSIKVLVD 235 Query: 242 QKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQR 301 EN Y R+V GN+ AQQ + +VF D WRG+G+I SG+ L DY++ Sbjct: 236 NIANGSIVFENMYSRIVAREGNIKAQQKMYEVFE-PVDVVWRGIGMIPRSGLGLVKDYEQ 294 Query: 302 FDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACA 361 FDA F + + + CGEVL GK +P C LF C P+T G+ MVSSEG CA Sbjct: 295 FDAAKKFDIKSKDIPEPKGCLCGEVLKGKKRPGDCKLFKKRCTPETPVGSCMVSSEGTCA 354 Query: 362 AWYQYRQ 368 A+Y+Y + Sbjct: 355 AYYKYGE 361 >UniRef50_P31903 Hydrogenase expression/formation protein hypD n=249 Tax=Bacteria RepID=HYPD_RALEH Length = 379 Score = 542 bits (1397), Expect = e-153, Method: Composition-based stats. Identities = 170/375 (45%), Positives = 236/375 (62%), Gaps = 12/375 (3%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M++++E+R E ++ H+R A + ME CGGHTHAI ++G+ +LLPEN Sbjct: 1 MKYIEEFRDGELAQRIAAHVRAEA-----RPGQRYNFMEFCGGHTHAISRYGVTELLPEN 55 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQG-SLLQAKARGADV 119 V IHGPGCPVCVLP+GRID + +A + I CT+GD MRVP G SL++AKA GAD+ Sbjct: 56 VRMIHGPGCPVCVLPIGRIDLALHLALERDAIVCTYGDTMRVPASGGMSLIRAKAHGADI 115 Query: 120 RIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLI 179 R+VYS DALK+AQ +P R+VVF +GFETT P TA+ +++AKAR V NF C H+ Sbjct: 116 RMVYSAADALKIAQRHPQREVVFLAIGFETTTPPTALIIREAKARQVDNFSVLCCHVLTP 175 Query: 180 PTLRSLLEQPDNG------IDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLL 233 + +LE P+ ID F+ P HVS+VIGT Y + ++ +P+V+AGFEPLD++ Sbjct: 176 SAITHILESPEVRDYGTVPIDGFVGPAHVSIVIGTRPYEHFSREYGKPVVIAGFEPLDVM 235 Query: 234 QGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGV 293 Q ++MLV+Q + ++VEN++ R V GN AQ +++VF + EWRGLG + S + Sbjct: 236 QAILMLVRQVNSGRAEVENEFVRAVTRDGNESAQAMVSEVFELRPSFEWRGLGEVPYSAL 295 Query: 294 HLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALM 353 + + RFDAE F + V D+ CG +L G KP C LF C P+ G+ M Sbjct: 296 RIRAQFARFDAEQRFDLRYRPVPDNKACECGAILRGVKKPTDCKLFATVCTPENPMGSCM 355 Query: 354 VSSEGACAAWYQYRQ 368 VSSEGACAA Y Y + Sbjct: 356 VSSEGACAAHYSYGR 370 >UniRef50_Q2SQT0 Hydrogenase expression/formation protein HypD n=6 Tax=Bacteria RepID=Q2SQT0_HAHCH Length = 370 Score = 538 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 164/374 (43%), Positives = 228/374 (60%), Gaps = 10/374 (2%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M+++DE+R + ++ + A ER R ME CGGHTH +F++G+ LLP N Sbjct: 1 MKYIDEFRNGDYAAEVARRIHAEAD-----PERRYRFMEFCGGHTHTLFRYGIPDLLPAN 55 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGK-QGSLLQAKARGADV 119 V+ IHGPGCPVCVLPM RID +E+A +V+ C++GD +RVPG + SL +AK++GADV Sbjct: 56 VKMIHGPGCPVCVLPMARIDAAIELAVRHQVVLCSYGDMLRVPGAHRTSLQKAKSQGADV 115 Query: 120 RIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLI 179 R++YSP DAL++A ENP R+VVFF +GFETT P TA L +A+ ++NF FC H+ Sbjct: 116 RMLYSPADALRIALENPQRQVVFFAIGFETTTPPTAAVLLKAQELKLRNFSVFCNHVLTP 175 Query: 180 PTLRSLLE----QPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQG 235 P + +LE + I+ + PGHVS++ G AY+ +A + P+V+AGFEPLD+L Sbjct: 176 PAITGILEPAQQAGERIIEGLVGPGHVSVITGGGAYDSLARRYRTPIVIAGFEPLDILHS 235 Query: 236 VVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHL 295 +++LV+Q A VENQY R V +GN AQ A + EWRGLG + S + + Sbjct: 236 ILLLVRQCNAGRYDVENQYSRAVTASGNAKAQSMAARTMTLRDSFEWRGLGWMPHSALRI 295 Query: 296 TPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVS 355 P++ +DAE F +P + ++ C VL G P C LF C P GA MVS Sbjct: 296 RPEFADYDAERRFELSPSEARENKACECPAVLRGAKAPTDCKLFATVCTPDNPIGACMVS 355 Query: 356 SEGACAAWYQYRQQ 369 SEGACAA Y Y Sbjct: 356 SEGACAAHYSYGHT 369 >UniRef50_A5FPQ9 Hydrogenase expression/formation protein HypD n=5 Tax=Dehalococcoides RepID=A5FPQ9_DEHSB Length = 364 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 150/370 (40%), Positives = 226/370 (61%), Gaps = 9/370 (2%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M F++E+R + L+E++ +R++ +P R ME CGGHT AIF++G+ QLLP + Sbjct: 1 MNFIEEFRNSQSGRTLLEYINKRST-------KPARFMEFCGGHTVAIFRYGIRQLLPPH 53 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 +E + GPGCPVCV +D + ++ VI C+FGD +RVP + SLL+ +A GADVR Sbjct: 54 IEMLSGPGCPVCVTSTADLDKVIALSRLTGVIICSFGDLLRVPSSRQSLLEVRAEGADVR 113 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 IVYS MDAL++A++NP +KV+F G+GFETT PT A ++ QA+ + + N+Y H P Sbjct: 114 IVYSTMDALEIARQNPAKKVIFVGIGFETTAPTIAASVIQARNQGLDNYYVMSLHKITPP 173 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 +R++L+ + + + PGHVS + G++A+ FI D+H V+GFE LD+L V LV Sbjct: 174 VMRAILDAGETRLSGIICPGHVSSITGSNAWEFIPKDYHLACAVSGFESLDILYCVKSLV 233 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 Q +++ Y R V GNL A + + +VF + + WRG+G++ SG+ L P++ Sbjct: 234 DQVEDKTPRLDVSYSRAVKPEGNLAALKIMDEVFDI-CPANWRGIGILPESGLCLKPEFA 292 Query: 301 RFDAEAHFRPAP-QQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGA 359 FDAE +F + + P CGE++ G P +C LF C P+ G MVSSEG Sbjct: 293 AFDAEKNFEIKLSEPSRETPGCLCGEIIKGTRTPLECKLFSKVCTPENPVGPCMVSSEGT 352 Query: 360 CAAWYQYRQQ 369 CAA+Y Y + Sbjct: 353 CAAYYHYGGK 362 >UniRef50_B8D1S3 Hydrogenase formation HypD protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1S3_HALOH Length = 365 Score = 532 bits (1372), Expect = e-150, Method: Composition-based stats. Identities = 145/369 (39%), Positives = 207/369 (56%), Gaps = 7/369 (1%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M+ VDE + + ++ ++ ++IMEVCG HT +IFK G+ LLP++ Sbjct: 1 MKCVDELSDRKIISGIVSKIKAI------KLSGKVKIMEVCGTHTMSIFKNGIKSLLPDS 54 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 +E I GPGCPVCV P ID + +A VI TF D +RVPG G+L + + ++ Sbjct: 55 IELISGPGCPVCVTPDIYIDKALALAKKENVIITTFADLLRVPGSSGTLQEMRVNRKNIT 114 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 VYSP++A+K+A NP ++V+F +GFETT+P A+++ +A + NF + P Sbjct: 115 TVYSPLEAVKIAYNNPGQEVIFLAIGFETTIPAIALSIIKANQLGLNNFSILQSLKIMPP 174 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 L+ L+ D +D F+ PGHVS + G + F+A D+H P VVAGFEP D++ + L Sbjct: 175 VLQELVLDKDLDVDGFILPGHVSTISGLQPFEFLARDYHVPGVVAGFEPGDIILSIYTLC 234 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 + +V+N Y R+V GN AQ+ I ++F DS WRGLG I SG+ L Y Sbjct: 235 KMLKDNDIRVKNLYPRLVRLEGNKKAQELIKEIFT-PVDSYWRGLGTITGSGLKLRKVYH 293 Query: 301 RFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGAC 360 R+ AE F+ Q CGE+L GK KP C LFG C P G MVS EG C Sbjct: 294 RYSAEKKFQFGDTQYRPGKGCICGEILKGKQKPTDCRLFGIKCTPMKPEGPCMVSREGTC 353 Query: 361 AAWYQYRQQ 369 AA+Y+YR + Sbjct: 354 AAYYRYRGK 362 >UniRef50_B8FG27 Hydrogenase expression/formation protein HypD n=4 Tax=Deltaproteobacteria RepID=B8FG27_DESAA Length = 367 Score = 532 bits (1371), Expect = e-150, Method: Composition-based stats. Identities = 161/368 (43%), Positives = 221/368 (60%), Gaps = 11/368 (2%) Query: 1 MRF--VDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLP 58 M + +D +R PE L + ++ + + P+RIMEVCG HT +IF+ G+ +LP Sbjct: 1 MSYQNLDSFRDPEVAKTL-------SGLIAESCQSPMRIMEVCGTHTVSIFRNGIRDMLP 53 Query: 59 ENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGAD 118 E++ + GPGCPVCV ID +++A VI TFGD MRVPG Q SL + +A+G Sbjct: 54 EDITLVSGPGCPVCVTDQKEIDDFIQLARKKNVILATFGDLMRVPGTQSSLQKQRAQGRK 113 Query: 119 VRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITL 178 V++VYS DAL LA +NP +K+VF G+GFETT PT + +A + ++NF+ + H T+ Sbjct: 114 VKVVYSAFDALTLAAQNPKKKIVFCGVGFETTAPTVGACILEADRQGLKNFFIYSAHKTV 173 Query: 179 IPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVM 238 P L +L+ D ID F+ PGHVS++IG DAY + F P +AGFEP D+L ++ Sbjct: 174 PPALDALMSM-DTVIDGFMMPGHVSVIIGADAYLPLVEKFSIPCAIAGFEPNDILASILT 232 Query: 239 LVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPD 298 LVQQK A SK+EN Y R V GN A++ + VF D+ WRGLGVI SG+ + + Sbjct: 233 LVQQKEAGESKLENTYSRAVSPIGNKKAREVMEQVFD-RVDASWRGLGVIPGSGLSIREE 291 Query: 299 YQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEG 358 Y+RFDA F P + CG +LTGK P QCP + C P G MVSSEG Sbjct: 292 YERFDASKAFELPPARSAAPKGCICGAILTGKKIPPQCPKYKIECTPTDPLGPCMVSSEG 351 Query: 359 ACAAWYQY 366 CAA+Y+Y Sbjct: 352 TCAAYYRY 359 >UniRef50_Q1LNV9 Hydrogenase expression/formation protein HypD n=5 Tax=Bacteria RepID=Q1LNV9_RALME Length = 387 Score = 532 bits (1371), Expect = e-150, Method: Composition-based stats. Identities = 167/375 (44%), Positives = 232/375 (61%), Gaps = 12/375 (3%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M+F+DE+R E Q+ E + A ++R ME CGGHTHAI ++G+ +LLP N Sbjct: 1 MKFIDEFRDGELAKQIGERIHAEA-----RSDRAYSFMEFCGGHTHAISRYGVLELLPSN 55 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQG-SLLQAKARGADV 119 V +HGPGCPVCVLP+GRID + +A + I CT+GD MRVP SL++AKARG D+ Sbjct: 56 VRMVHGPGCPVCVLPIGRIDLAIRLALERDAIVCTYGDTMRVPASDSLSLMKAKARGGDI 115 Query: 120 RIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLI 179 R+VYS DAL +A+ NP R+VVFF +GFETT P TA+ ++ A+ + NF C H+ Sbjct: 116 RMVYSAADALAIARANPQREVVFFAIGFETTTPPTALAIRDAQREGLSNFSVLCCHVLTP 175 Query: 180 PTLRSLLEQPDNG------IDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLL 233 + +LE P+ ID F+ P HVS+VIG+ Y A ++ +P+V+AGFEPLD++ Sbjct: 176 SAITHILESPEVRQFGTVPIDGFVGPAHVSIVIGSQPYEHFAEEYRKPVVIAGFEPLDVM 235 Query: 234 QGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGV 293 Q ++MLV+Q + VEN++ R V GNL AQ +++VF + EWRGLG + S + Sbjct: 236 QAILMLVRQVNRGAAHVENEFTRAVTPEGNLRAQALVSEVFELRPSFEWRGLGEVPYSAL 295 Query: 294 HLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALM 353 + + FDAE F A Q V D+ CG +L G +P C +FG C P+ G+ M Sbjct: 296 KIREAFAAFDAERRFDLAYQSVPDNKACECGAILRGVKRPTDCKIFGTVCTPENPVGSCM 355 Query: 354 VSSEGACAAWYQYRQ 368 VSSEGACAA Y Y + Sbjct: 356 VSSEGACAAHYTYGR 370 >UniRef50_Q31DZ2 Hydrogenase expression/formation protein hypD n=79 Tax=Bacteria RepID=Q31DZ2_THICR Length = 388 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 160/364 (43%), Positives = 225/364 (61%), Gaps = 6/364 (1%) Query: 7 YRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHG 66 +R P+ + L + + + A LS PLRIMEVCGGHTH I K+GL+Q LPEN+EFIHG Sbjct: 13 FRQPKTIQALAQKIHQTAQTLS----SPLRIMEVCGGHTHTIMKYGLNQQLPENIEFIHG 68 Query: 67 PGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPM 126 PGCPVC++P RID + +A P I T GD +RVPG + SL + +A G+D+R +YSP+ Sbjct: 69 PGCPVCIMPKERIDHAIALAQMPNTILLTLGDMIRVPGSKTSLAKQRALGSDIRALYSPL 128 Query: 127 DALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLL 186 DAL +AQENP ++VVFF +GFETT P T +QQA + N +F H+ + P + ++L Sbjct: 129 DALTIAQENPDKQVVFFAIGFETTTPMTTAVIQQALVLKLPNLFFHINHVLVPPAVAAIL 188 Query: 187 EQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAA 246 D I+A + P HVS++ G Y +A+ P+VV+GFEP+D++Q ++M+V+Q + Sbjct: 189 SDKDCQINALIGPSHVSVISGAQIYQPLAAQHRIPIVVSGFEPVDVMQSILMIVEQMLQK 248 Query: 247 HSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEA 306 +VE QY R V + GN AQQ I WRGLG I S + L Y+ DAE Sbjct: 249 RHQVEIQYSRAVTEQGNQKAQQMIETYLEPRSHFRWRGLGDIPLSALQLKDAYRFLDAET 308 Query: 307 HFR--PAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWY 364 F+ + + + D CG++L G KP C +FG C+P G+ MVSSEGAC A+Y Sbjct: 309 VFKSVLSDEPIDDHKLCICGDILKGVAKPQDCKVFGRGCDPARPLGSCMVSSEGACNAYY 368 Query: 365 QYRQ 368 +Y + Sbjct: 369 RYAE 372 >UniRef50_C8WJD4 Hydrogenase expression/formation protein HypD n=29 Tax=Bacteria RepID=C8WJD4_EGGLE Length = 393 Score = 526 bits (1355), Expect = e-148, Method: Composition-based stats. Identities = 150/363 (41%), Positives = 213/363 (58%), Gaps = 7/363 (1%) Query: 4 VDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEF 63 + ++ P+ LIE + + + T +MEVCG HT AI + G+ L+PE Sbjct: 37 LAAFKDPKLARGLIESIAKLSPAGGAT------LMEVCGTHTVAIARNGIRNLMPEGTRL 90 Query: 64 IHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVY 123 GPGCPVCV IDT + +A P + TFGD RVPG SLL +A G V+IVY Sbjct: 91 ASGPGCPVCVTSNRDIDTVIALARVPGITIATFGDMTRVPGSTSSLLAEQAAGRSVQIVY 150 Query: 124 SPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLR 183 SP+DAL LAQ+NP R++VF G+GFETT P A+ +++A A ++NF F H + L Sbjct: 151 SPLDALTLAQQNPDREIVFVGVGFETTTPLVAMAIKRAAAAGLKNFSVFGAHKNMPGALE 210 Query: 184 SLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQK 243 +++ P +DA + PGHVS +IG + Y F+A + P V+ GFEP+D+LQG+ M+++Q Sbjct: 211 AIINDPQLKVDALILPGHVSTIIGAEPYRFLAEKYGIPGVITGFEPVDVLQGIAMIMRQL 270 Query: 244 IAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFD 303 + +E Y R V GN +A AI +VF + WRGLG I SG + ++ +FD Sbjct: 271 HEGRADIEIAYARGVMPEGNPVALAAIDEVFE-TCTALWRGLGEIPGSGYRIREEFAQFD 329 Query: 304 AEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAW 363 A F+P + D RCG+VL G P++CPLF C P+ G MVSSEG+CAA+ Sbjct: 330 AVRRFQPDVEPTQDPKGCRCGDVLRGIMAPNECPLFRKVCTPENPVGPCMVSSEGSCAAY 389 Query: 364 YQY 366 ++Y Sbjct: 390 HRY 392 >UniRef50_Q0RN44 Hydrogenase expression/formation protein n=74 Tax=Bacteria RepID=Q0RN44_FRAAA Length = 407 Score = 523 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 176/368 (47%), Positives = 231/368 (62%), Gaps = 8/368 (2%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M++++E+ P +L++ + RP IMEVCGG TH++ + G+DQLLP Sbjct: 1 MKYLEEFSDPALAGRLLDQIH-------AVTTRPWAIMEVCGGQTHSLIRHGIDQLLPAG 53 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 VE IHGPGCPVCV P+ ID +EIAS P VIFC+FGD +RVPG L + K+ GADVR Sbjct: 54 VEMIHGPGCPVCVTPLEIIDRALEIASRPGVIFCSFGDMLRVPGSGRDLFRVKSTGADVR 113 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 +VYSP+DAL +A+ NP R+VVFFG+GFETT P A+T+ QAK V+NF H+ + P Sbjct: 114 VVYSPLDALTIARRNPDRQVVFFGIGFETTAPANAMTVYQAKRCGVRNFSLLVSHVLVPP 173 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 + +++E P + FLA GHV V+GT Y +A + P+VV GFEPLDLL+G+ V Sbjct: 174 AMAAIMESPSCRVQGFLAAGHVCSVMGTGQYPELARRYQVPIVVTGFEPLDLLEGIRRTV 233 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 Q +++N Y R VP AGN A + DVF V D WRG+GVI SG L+ Y Sbjct: 234 TQLEEGRHELDNAYPRAVPAAGNPAAIAMLRDVFTV-TDRAWRGIGVIPDSGWRLSAAYA 292 Query: 301 RFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGAC 360 +FDAE F + R GEVL G KPH+C FG+ C P+T GA MVS+EGAC Sbjct: 293 QFDAETRFAVRDIHTEESSVCRSGEVLQGLIKPHECAAFGHRCTPRTPLGATMVSAEGAC 352 Query: 361 AAWYQYRQ 368 AA+Y YR+ Sbjct: 353 AAYYLYRR 360 >UniRef50_B8FQW4 Hydrogenase expression/formation protein HypD n=7 Tax=Bacteria RepID=B8FQW4_DESHD Length = 367 Score = 520 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 155/367 (42%), Positives = 225/367 (61%), Gaps = 4/367 (1%) Query: 4 VDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEF 63 V+ Y + + V ++ + L+ P +MEVCG HT AI K L LLP + Sbjct: 3 VNNYNSKQSVKEVAAGYLKEIRELAAA---PYTVMEVCGTHTVAIAKNALRDLLPAQIRL 59 Query: 64 IHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVY 123 + GPGCPVCV ID + +A+ P VI TFGD +RVPG Q SL + GAD+RIVY Sbjct: 60 VSGPGCPVCVTDSSDIDQFLYLAAQPHVITATFGDMIRVPGSQKSLQMLRGEGADIRIVY 119 Query: 124 SPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLR 183 S +DAL LA++NP ++VVF G+GFETT+PT ++++QA+ D++N+ H + P LR Sbjct: 120 STLDALDLARKNPDKEVVFLGVGFETTVPTVCVSIEQAQKEDIRNYSILSMHKLVPPVLR 179 Query: 184 SLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQK 243 +L E P+ +D FL PGH +IG++A F+A D+ P VV GFE LD+L+G+VML++Q+ Sbjct: 180 ALAEDPETEVDGFLDPGHACAIIGSEALAFMAEDYAMPGVVTGFEALDILEGLVMLLRQR 239 Query: 244 IAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFD 303 +++E QY ++V GN +AQ I +F D+ +RGLG+I G+ + +Y+ +D Sbjct: 240 DQGRAEIEIQYDKIVKPEGNRVAQALIHKIFE-PVDAAFRGLGIIPLGGLGVRKEYEDWD 298 Query: 304 AEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAW 363 A F + + P RCG VL G+ P +CPLF C P + G MVSSEG+CAA+ Sbjct: 299 AAKKFALPEFETVEIPGCRCGNVLKGQITPPECPLFARKCTPLSPVGPCMVSSEGSCAAY 358 Query: 364 YQYRQQE 370 Y+Y Q+ Sbjct: 359 YRYAQRS 365 >UniRef50_Q2RGH3 Hydrogenase expression/formation protein HypD n=7 Tax=Bacteria RepID=Q2RGH3_MOOTA Length = 377 Score = 518 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 158/370 (42%), Positives = 217/370 (58%), Gaps = 3/370 (0%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M +D + E +L+ + A ++ RP +EVCG HT AI + GL LL Sbjct: 1 MSPLDRFCDTELSRKLMGRVAALADEVAERLGRPAVFIEVCGTHTVAISRLGLRSLLAGR 60 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 VE GPGCPVCV ID V++A P V TFGD +RVPG + SL + +A GADVR Sbjct: 61 VELRSGPGCPVCVTDHQEIDMMVDLARLPGVTLGTFGDMLRVPGSRSSLERERAGGADVR 120 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 I YSP+DA+ A+ NP R+VVF G+GFETT P A +L +A+A+ V+NF F H + P Sbjct: 121 IFYSPLDAVAFAEANPEREVVFLGIGFETTAPAVAASLARARAKGVKNFSLFSAHKLIPP 180 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 LR++L P+ +D + PGHVS V G A++FI ++ P V++GF+P+D+L + L+ Sbjct: 181 ALRAVLSDPELKLDGLILPGHVSAVTGRRAFDFIVKEYGLPSVISGFDPMDILIALHELL 240 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 Q + ++V N+Y RVV + GNL A++ IA+ F D WRGLGVI SG+ L ++ Sbjct: 241 LQLLRGEARVANKYTRVVREEGNLDARKRIAECFEEV-DVPWRGLGVIPESGLSLRETFR 299 Query: 301 RFDAEAHFRPA--PQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEG 358 FDA P P C E+L GK P +C LF N C P G MVSSEG Sbjct: 300 DFDARFKLNIEPAPPTPLYPPGCACKEILRGKLLPPECRLFSNVCTPVHPVGPCMVSSEG 359 Query: 359 ACAAWYQYRQ 368 ACAA+Y++ + Sbjct: 360 ACAAYYRFER 369 >UniRef50_A9Y8W2 Hydrogenase formation HypD protein n=3 Tax=Desulfovibrionaceae RepID=A9Y8W2_DESVM Length = 365 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 160/371 (43%), Positives = 222/371 (59%), Gaps = 9/371 (2%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 + F ++ P+ LIE L +RPLR MEVCG HT AIF+ G+ LLP Sbjct: 3 VNFSTAFKDPDLSRGLIERLHR-------ALDRPLRFMEVCGTHTVAIFQSGMRPLLPAG 55 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQG-SLLQAKARGADV 119 V + GPGCPVCV + +++A P VI TFGD MRVPG G +L A+A+GA V Sbjct: 56 VRHLSGPGCPVCVTHESEVAAYLQLAEKPGVIIATFGDLMRVPGPGGDNLKLAQAKGARV 115 Query: 120 RIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLI 179 IVYS DALKLA +NP VVF G+GFETT PT A T+ A+ + + NF H + Sbjct: 116 EIVYSAHDALKLAADNPGDTVVFLGIGFETTAPTVAATVLMARQQGLANFCVLSFHKLVP 175 Query: 180 PTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVML 239 P LR+LL PD +DAFL PGHVS ++G + Y F+A +F P ++AGF+P+D+LQ ++++ Sbjct: 176 PALRALLADPDCAVDAFLLPGHVSTILGMEPYRFVADEFRTPGIIAGFDPVDILQALLIM 235 Query: 240 VQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDY 299 V+Q+ + N YRR V DAGN A++ + VF D+ WRG+G I SG+ P++ Sbjct: 236 VEQRKTGEFAIVNSYRRAVDDAGNPRAREILDTVFQ-TADALWRGIGCIPGSGLVFRPEF 294 Query: 300 QRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGA 359 +++DA A + +CG+VL GK +P CPLF C P G MVS+EG+ Sbjct: 295 EQYDAMARLGLTLPEARPIAGCKCGDVLKGKMQPCDCPLFAKACTPAKPVGPCMVSTEGS 354 Query: 360 CAAWYQYRQQE 370 CAA+++Y + Sbjct: 355 CAAYFKYNVEA 365 >UniRef50_C1TK22 Hydrogenase expression/formation protein HypD n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TK22_9BACT Length = 361 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 138/352 (39%), Positives = 207/352 (58%), Gaps = 1/352 (0%) Query: 18 EHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMG 77 + +S L +RP IMEVCG HT +IF+ GL L PE+++ I GPGCPVCV G Sbjct: 4 NRAKLLSSALKKLTKRPTTIMEVCGTHTVSIFRQGLRSLFPEDLKLISGPGCPVCVTSQG 63 Query: 78 RIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPT 137 ID +E+A+ V+ T+GD MRVPG G+L + + G+DVR+V S M+ L++A+E P Sbjct: 64 EIDGAIELATRKNVVMATYGDMMRVPGSNGTLGELRGTGSDVRVVLSAMETLRMAEEMPH 123 Query: 138 RKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFL 197 +++VF +GFETT P TA L +A+ R ++N C H + P L L + N +D FL Sbjct: 124 KEIVFLAVGFETTAPATAALLIEARKRKLENLSVLCLHKRVPPALEVLSKADGNRVDGFL 183 Query: 198 APGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRV 257 PGHV++++G + + FI VAGFE +++ +V L++Q + ++Y + Sbjct: 184 LPGHVAVILGHEPFKFIPEKHGIACTVAGFEADEIMLALVDLLEQICENRPSLTSRYEKA 243 Query: 258 VPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCD 317 V GN+ A + VF + + WRG+G I+ SG+ + +Y +D F A + V + Sbjct: 244 VRPEGNVKAVDLMDRVFDTSTSA-WRGIGPIDESGMSIKEEYSLWDGSRKFDVAVRNVPE 302 Query: 318 DPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQ 369 RCG++L+G P +CPLFG C P T G MVSSEG C+AWY+Y ++ Sbjct: 303 PNGCRCGDILSGTITPKECPLFGTGCTPVTPVGPCMVSSEGTCSAWYRYGRK 354 >UniRef50_B7B8S5 Putative uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7B8S5_9PORP Length = 370 Score = 513 bits (1321), Expect = e-144, Method: Composition-based stats. Identities = 169/378 (44%), Positives = 232/378 (61%), Gaps = 19/378 (5%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 MRFVDEYR EQV L+ +R+ RP IME+CGG TH I ++ L+++LPE Sbjct: 1 MRFVDEYRDKEQVRSLVRAIRQ-------VVTRPWHIMEICGGQTHTIARYRLEEMLPEE 53 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 V+ +HGPGCPVCV P+G ID +E+A P+VI +FGD MRVPG + LLQ KARGAD+R Sbjct: 54 VKLLHGPGCPVCVTPVGIIDRALELAKRPDVILASFGDMMRVPGSREDLLQIKARGADIR 113 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 I+YSP+DA+ LA ++P +K+VFF +GFETT P + L++A R ++NFY T+ P Sbjct: 114 ILYSPLDAVSLAADHPDKKIVFFAIGFETTAPVHMMALKEAARRKLENFYLHTSLFTVPP 173 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 + ++L P++ +D FLA GHV + G AY +A + P+VV GFEP DLL G+ + Sbjct: 174 AIEAILSDPESRVDGFLAAGHVCAITGNGAYRHLAEKYKTPIVVTGFEPADLLLGIYCCL 233 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 Q A KVEN Y+RVVP+ GNL A+ + + + D EWRGLG I SG+ L + Sbjct: 234 LQLEAGIYKVENVYKRVVPEEGNLPARALMEETLEL-CDQEWRGLGTIPQSGLRLKEIFA 292 Query: 301 R---------FDAEAHFRPAPQQVCDDPRARC--GEVLTGKCKPHQCPLFGNTCNPQTAF 349 R DA+AH + + +C G+++ G + CP FG C P Sbjct: 293 RQDASHLLPALDAKAHKQCLEATSSGVEKGQCIAGDIMRGTKQTKDCPFFGTLCTPDHPV 352 Query: 350 GALMVSSEGACAAWYQYR 367 GA MVSSEG CAA+Y+Y+ Sbjct: 353 GAPMVSSEGVCAAYYRYK 370 >UniRef50_B0TCN3 Hydrogenase expression/formation protein hypd n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TCN3_HELMI Length = 372 Score = 513 bits (1321), Expect = e-144, Method: Composition-based stats. Identities = 151/366 (41%), Positives = 208/366 (56%), Gaps = 1/366 (0%) Query: 3 FVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVE 62 + +R PE Q+ E +RER L+ R + +ME CG HT AI + G+ +LL +V Sbjct: 5 ILKRFRDPELGRQMAEQVRERLDRLTDRLGRRVNVMEFCGTHTAAISRTGIRELLKPHVH 64 Query: 63 FIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIV 122 + GPGCPVCV ID + +A I TFGD M+VPG + +LL+ KARGADVR+V Sbjct: 65 LMSGPGCPVCVSDYVDIDRVIALAGMSGAIIATFGDMMKVPGSRTTLLEEKARGADVRVV 124 Query: 123 YSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTL 182 +S +DAL +A+EN R V+F G+GFETT PT A+T++QA NF+ + H P + Sbjct: 125 FSSLDALAIARENADRAVIFVGVGFETTAPTAAVTVEQAVQEGRDNFFLYSLHKITPPAM 184 Query: 183 RSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQ 242 +LL D +D L PGHVS++ G ++F++ D P VVAGFE L+LL V L Sbjct: 185 MALLPDRDLQVDGILLPGHVSLITGRGYWDFLSRDLALPGVVAGFELLELLSAVDALASS 244 Query: 243 KIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRF 302 + V N Y R V + GNL A A+A F + + WRGLG++ +S + L P+ + Sbjct: 245 LLEERCAVINAYGRAVREEGNLSALDALARCFDLQ-EGHWRGLGIVPASALKLKPELAPW 303 Query: 303 DAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAA 362 DAE F + CGE+L GK P CPLF + C P G MVS EG CA Sbjct: 304 DAEVRFPLENRPAAPPKGCLCGEILKGKKTPFDCPLFASRCEPARPVGPCMVSHEGTCAT 363 Query: 363 WYQYRQ 368 +Y+Y + Sbjct: 364 YYRYER 369 >UniRef50_C4KD97 Hydrogenase expression/formation protein HypD n=2 Tax=Betaproteobacteria RepID=C4KD97_THASP Length = 393 Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 171/376 (45%), Positives = 229/376 (60%), Gaps = 13/376 (3%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M++VDE+R RA R ME CGGHTHAI ++G+ LLP N Sbjct: 1 MKYVDEFRDGALAAG-----LARALAREVDPGRDYAFMEFCGGHTHAISRYGVADLLPPN 55 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIAS-HPEVIFCTFGDAMRVPGKQG-SLLQAKARGAD 118 V IHGPGCPVCVLP+GR+D + +A PEVI C++GD +RVP G SLL+AKARGAD Sbjct: 56 VRMIHGPGCPVCVLPIGRVDMAIGLALARPEVILCSYGDCLRVPASDGLSLLKAKARGAD 115 Query: 119 VRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITL 178 VR+VYS DAL LA P R+VVFF +GFETT P TA+ L++A R + NF C H+ Sbjct: 116 VRMVYSAADALALAVREPAREVVFFAIGFETTTPPTALVLREAATRRLANFSVICNHVLT 175 Query: 179 IPTLRSLLEQPD------NGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDL 232 P + ++L+ P +D F+ P HVS +IG+ Y A+ + +P+V+AGFEPLD+ Sbjct: 176 PPAITAILDSPAASRLGALHLDGFIGPAHVSTLIGSRPYEAFAARYRKPVVIAGFEPLDV 235 Query: 233 LQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSG 292 +Q + MLV+Q ++VEN++ R V GN AQ +++V + + EWRGLGV+ S Sbjct: 236 MQAIRMLVRQVDTGRAEVENEFTRAVVRDGNPKAQAIVSEVLALRDEFEWRGLGVLARSA 295 Query: 293 VHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGAL 352 + + P + +DAEA F + V D CG +L G KP C LFG C P+T G+ Sbjct: 296 LRIRPAFAPWDAEAKFGLDYRPVPDHRACECGAILRGVKKPTDCKLFGTVCTPETPMGSC 355 Query: 353 MVSSEGACAAWYQYRQ 368 MVSSEGACAA Y Y + Sbjct: 356 MVSSEGACAAHYNYGR 371 >UniRef50_B5YB75 Hydrogenase expression/formation protein HypD n=2 Tax=Dictyoglomus RepID=B5YB75_DICT6 Length = 352 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 134/351 (38%), Positives = 204/351 (58%), Gaps = 2/351 (0%) Query: 19 HLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGR 78 L++ + + + + IME CG HTH IF++G+ ++LP N+ + GPGCPVCV Sbjct: 2 ELKDLLEKIRTISTKEINIMEFCGTHTHEIFRYGIREILPPNIHLLSGPGCPVCVTAEED 61 Query: 79 IDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTR 138 ID + ++ + TFGD + VPG GSL +ARG +VR+VYSP+++L +A+ENP + Sbjct: 62 IDYIIALSQEYNLGIITFGDLVNVPGSLGSLNYLRARGKEVRVVYSPLESLNIAKENPHK 121 Query: 139 KVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLA 198 K + G+GFETT P A TL +A +++N YF H P ++++L+ + +D + Sbjct: 122 KYLLVGIGFETTAPNLAYTLIKATEENIKNLYFLSLHKLTPPAMKAILDMGEIKLDGIIG 181 Query: 199 PGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVV 258 PGHVS +IG + I + P V+ GF+P +++ G+ LV+ K+ N Y R V Sbjct: 182 PGHVSTIIGRVGWKEIFEKYRVPFVIMGFKPEEIVYGIYHLVKIIEEGEPKLLNAYERSV 241 Query: 259 PDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDD 318 + GN A + + VF G + WRGLG+IE SG+ L +++ FD + ++ D+ Sbjct: 242 KEEGNKHALEVMYKVFK-KGPANWRGLGIIEESGLVLREEFEDFDVRRIYPLKIEKRVDN 300 Query: 319 -PRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQ 368 +CGEVL G KP +CPLFG C P+ G MVSSEG C+A+Y Y Sbjct: 301 YNPCKCGEVLRGVLKPTECPLFGKACTPEYPKGPCMVSSEGTCSAYYLYGG 351 >UniRef50_B2TM77 Hydrogenase isoenzymes formation protein HypD n=2 Tax=Clostridium botulinum RepID=B2TM77_CLOBB Length = 361 Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 131/364 (35%), Positives = 213/364 (58%), Gaps = 8/364 (2%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M ++ + L++ + + A + IMEVCG HT +I++ G+++LLPEN Sbjct: 1 MELINRFNDVSLCKTLLKEIEKNAME-------KINIMEVCGTHTRSIYELGINKLLPEN 53 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 + + GPGCP+CV P+ ID ++++ P+ I TFGD MRVPG SL + KA+G D+R Sbjct: 54 INLLSGPGCPICVTPVNYIDNAIKLSKKPQTIIVTFGDMMRVPGSSSSLSEEKAKGMDIR 113 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 I+YSP+D++K+A++N ++V+ G+GFETT P A+TL+ AKA+ + NF T+ Sbjct: 114 IIYSPLDSIKIAEKNKDKEVILLGIGFETTAPIIALTLKYAKAKKINNFSVLLSIKTMPN 173 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 T++ L+ I+ F+ PGHV+ +IG + +N ++ + P+ + GF+ ++L G++ +V Sbjct: 174 TMKELVLDGRAKINGFICPGHVATIIGEEPFNILSMESKLPMSICGFKGTEILVGILSIV 233 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 + K EN YR V GN+ A++ I +VF ++ DS WRG+G I+ +G +Y+ Sbjct: 234 KLVNNNEYKCENLYRGFVKKKGNIKAKELINEVFEIS-DSVWRGMGTIKQTGFDFKNEYK 292 Query: 301 RFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGAC 360 FD+ F +++ + CGE+L G P C FG C P+ G MVS+EG C Sbjct: 293 IFDSTKKFLLRHRELNLNNNCICGEILQGISNPRDCLSFGKCCTPENPIGPCMVSNEGTC 352 Query: 361 AAWY 364 Y Sbjct: 353 KIVY 356 >UniRef50_C5RHD4 Hydrogenase formation HypD protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5RHD4_CLOCL Length = 390 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 139/385 (36%), Positives = 202/385 (52%), Gaps = 47/385 (12%) Query: 28 SYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIAS 87 S +R +RIME+CG HT I K G+ +LLP N++ I GPGCPVCV G ID + ++ Sbjct: 3 SLEIDREIRIMEICGTHTTTILKSGIRKLLPPNIKLISGPGCPVCVTSQGYIDAAINLSE 62 Query: 88 HPEVIFCTFGDAMRVPGK------------------------------------------ 105 +I TFGD + VPG Sbjct: 63 KENLIITTFGDMLNVPGSIPFEDKDGLLNNENSDNPSNIRNIIQDQYGDKGNTFIFKDIN 122 Query: 106 ----QGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQA 161 SL+ +A+G DVR++YSP++AL +A++NP ++VVF +GFETT PT A+T++QA Sbjct: 123 FNTKANSLMNQRAKGKDVRVIYSPLEALNIAKKNPNKEVVFLAIGFETTAPTIALTIEQA 182 Query: 162 KARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRP 221 +++NF F T+ ++ L+ + +D + PGHVS +IG +A+ F++ + H P Sbjct: 183 YQENIRNFSAFTSLKTMPEAIKGLISDKEINVDGVICPGHVSTIIGENAFKFMSEELHMP 242 Query: 222 LVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSE 281 V+AGFE D+L V +LV +++N Y VV GN A++ I V V DS Sbjct: 243 SVIAGFEDRDVLIAVCLLVDMIRENKHELKNIYGSVVKLEGNKKAKELINKVLNVV-DSN 301 Query: 282 WRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGN 341 WRGLG I++SG+ ++ Y+ FDA F Q+ CG +L G+ P C LFG Sbjct: 302 WRGLGEIKNSGLAISDKYKAFDAVIKFNIKVQEALSASGCICGSILKGQKTPEDCKLFGK 361 Query: 342 TCNPQTAFGALMVSSEGACAAWYQY 366 C P + G MVS EG C Y+Y Sbjct: 362 KCTPYSPLGVCMVSKEGTCGIHYKY 386 >UniRef50_Q5H7P6 Hydrogenase expression/formation protein HypD n=11 Tax=Euryarchaeota RepID=Q5H7P6_PYRKO Length = 372 Score = 501 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 140/370 (37%), Positives = 200/370 (54%), Gaps = 13/370 (3%) Query: 5 DEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFI 64 + YR+ E M+L+E +RE A L + +RIM VCG H + + G+ LLPENV+ + Sbjct: 6 EAYRSREVAMKLVEKIREEAKTL----DGEIRIMHVCGTHEDTVTRHGIRSLLPENVKVV 61 Query: 65 HGPGCPVCVLPMGRIDTCVEIASH-----PEVIFCTFGDAMRVPGKQGSLLQAKARGADV 119 GPGCPVC+ P+ I I E+I TFGD ++P GS K+ G DV Sbjct: 62 SGPGCPVCITPVEDIVAMQLIMRKAREEGEEIILTTFGDMYKIPTPMGSFADLKSEGFDV 121 Query: 120 RIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLI 179 RIVY D ++A+ENP + VV F GFETT A L A +++NF + H Sbjct: 122 RIVYGIFDTYRIAKENPDKTVVHFSPGFETTTAPAAGMLNVAAQEELENFKIYSVHRLTP 181 Query: 180 PTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVML 239 P + LL+Q +APGHVS +IG + ++ + P VVAGFEP D+L ++ML Sbjct: 182 PAVEVLLKQG-TVFQGLIAPGHVSTIIGVKGWEYLTEKYGIPQVVAGFEPNDVLMAILML 240 Query: 240 VQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDY 299 ++ +++ N+Y R V GN++AQ+ I F V D++WR LGV SG+ L ++ Sbjct: 241 IRMYKEGEARIINEYERAVKYEGNVVAQKMIDKFFEVV-DAKWRALGVFPKSGLELRKEW 299 Query: 300 QRFDAEAHFRPAPQQVCDD--PRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSE 357 + F+ + ++ + D RCG VL G P CPLFG TC P+ G MVS E Sbjct: 300 KDFEIRSFYKVEVPKNLPDLEKGCRCGAVLRGLALPTDCPLFGKTCTPRHPVGPCMVSYE 359 Query: 358 GACAAWYQYR 367 G C +Y+Y Sbjct: 360 GTCQIFYKYG 369 >UniRef50_C6QQX3 Hydrogenase formation HypD protein n=2 Tax=Bacillaceae RepID=C6QQX3_9BACI Length = 369 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 149/368 (40%), Positives = 225/368 (61%), Gaps = 2/368 (0%) Query: 3 FVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVE 62 +D Y + + L++ ++E A +R MEVCG HT A+ + G+ + L +++ Sbjct: 4 LIDPYTSSKLSRALLDEVKELAKQFQKEFQRIPAFMEVCGSHTMALARTGVKKALQDDIR 63 Query: 63 FIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIV 122 I GPGCPVCV ID + + + + I CTFGD MRVPG G+L+QAK G D+R+V Sbjct: 64 LISGPGCPVCVTDQAAIDAMISLTAGSDRIICTFGDMMRVPGSYGTLMQAKTEGKDIRVV 123 Query: 123 YSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTL 182 YSP+DA+++A++NP ++V+F G+GFETT+PT A L++A+ +V NF + P L Sbjct: 124 YSPVDAVRIAEQNPQKEVIFLGIGFETTIPTLAAALKEAEENEVDNFSIWMAAKLTEPIL 183 Query: 183 RSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQ 242 R LL + +D FL PGHVSMV+G + F+A+++H P V++GFE ++LL + L+ Sbjct: 184 RHLLNNKEVALDGFLLPGHVSMVMGRKHFEFLAAEYHLPGVISGFEAIELLSSLRQLLLL 243 Query: 243 KIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRF 302 + ++ V N YR VV + GN A+ + F + D WRG+GVI SG+ + +Y++F Sbjct: 244 ALEQNALVVNDYRNVVSEEGNSHAKYWMNHYFS-SCDEPWRGIGVIAQSGMDIREEYRQF 302 Query: 303 DAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAA 362 +A+ F P + + RCGEV+ G P +C LFG C P G MVSSEG+CAA Sbjct: 303 NAKEKFSV-PMRSPRKTKCRCGEVIRGLIDPPECSLFGKACTPLNPIGPCMVSSEGSCAA 361 Query: 363 WYQYRQQE 370 +YQY ++E Sbjct: 362 YYQYMREE 369 >UniRef50_D1BLR9 Hydrogenase formation HypD protein n=5 Tax=Veillonellaceae RepID=D1BLR9_VEIPT Length = 372 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 136/358 (37%), Positives = 209/358 (58%), Gaps = 3/358 (0%) Query: 14 MQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCV 73 + L R + L +R+MEVCG HT +IF+ GL QLLP +E + GPGCPVCV Sbjct: 10 QHTADALLRRINALHK-PGETVRLMEVCGTHTVSIFREGLRQLLPCGIELVSGPGCPVCV 68 Query: 74 LPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQ 133 +D + A +VI TFGD ++VPG SL +A+ +GA + ++Y+P++ ++L++ Sbjct: 69 TDQTYMDKALAYAECEDVIIATFGDMLKVPGSYSSLNEAQTKGAHIHVIYTPLEVIELSK 128 Query: 134 ENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGI 193 + P +K+VF +GFETT+ T++ A ++N +F H + P LR+LL++ + I Sbjct: 129 KYPEKKIVFLAIGFETTIAIICATVKAVHAAGLKNVFFLVSHKLVPPALRALLDKQEGHI 188 Query: 194 DAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQ 253 D F+ PGHVS++IG + Y F+ ++ P +AGF+ L++L + +++Q+ + + V N Sbjct: 189 DGFILPGHVSVIIGEEPYQFLPKEYGIPSCIAGFDGLEILSAIANILEQRKSGNIVVGNT 248 Query: 254 YRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPA-P 312 Y VV GN +AQ I +V+ V D WRG+GVI +SG+ L +Y +D E Sbjct: 249 YHSVVMQKGNPVAQAMIEEVYEVCDD-VWRGIGVIPNSGLALKGEYAAYDVELVLPINLD 307 Query: 313 QQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQE 370 + D +CG VL G KP +C LFG +C GA MVS EG+CAAWY+Y Sbjct: 308 KPSLDPKGCQCGRVLQGLIKPSECLLFGKSCTADHPVGACMVSVEGSCAAWYKYGYSS 365 >UniRef50_Q58400 Putative hydrogenase expression/formation protein MJ0993 n=8 Tax=Euryarchaeota RepID=Y993_METJA Length = 358 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 142/360 (39%), Positives = 206/360 (57%), Gaps = 8/360 (2%) Query: 9 APEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPG 68 + + I+ + + A + L+IM VCG H H I K+G+ +LPEN+ + GPG Sbjct: 6 DRALIKKAIDKINKLAEKIDK-----LKIMHVCGSHEHTICKYGIRDVLPENITVVPGPG 60 Query: 69 CPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDA 128 CPVCV IDT + +A + VI T GD RVPG + SL++ ++ G DVRIVYS +A Sbjct: 61 CPVCVTTQKEIDTAIYLADNGYVI-TTLGDMYRVPGSEKSLMEKQSEGCDVRIVYSISEA 119 Query: 129 LKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQ 188 +K+A++ +K VF +GFETT PTT L K +DV NF+ H P + LL + Sbjct: 120 VKMAKKERDKKFVFVAIGFETTAPTTGAELISLKNKDVNNFFILNCHRQTPPVMEFLLNE 179 Query: 189 PDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHS 248 +DAF+ PGHVS + G Y + + P+VVAGFEP+D+L ++M+++Q I+ + Sbjct: 180 G-VYLDAFICPGHVSTITGLKPYYGLCEKYKAPMVVAGFEPIDVLMAIIMILKQVISGEA 238 Query: 249 KVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHF 308 KVEN+Y R V GN+LAQ+ I +VF + D WRG V+++ G L Y++FD H Sbjct: 239 KVENEYIRAVKPEGNVLAQKIINEVFE-SIDVPWRGFPVVKNGGFGLREKYKKFDIYEHE 297 Query: 309 RPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQ 368 + C ++L G+ P CPLFG C P G+ MVS EG C +Y+YR+ Sbjct: 298 DIPEIKEKIPKGCICDKILRGEKLPTDCPLFGTVCTPLNPVGSCMVSDEGTCRIFYKYRR 357 >UniRef50_C5A3E4 [NiFe] hydrogenase maturation protein (HypD) n=4 Tax=Euryarchaeota RepID=C5A3E4_THEGJ Length = 374 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 136/373 (36%), Positives = 199/373 (53%), Gaps = 13/373 (3%) Query: 2 RFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENV 61 + YR E +L+E ++E A L + +RIM VCG H I + G+ LLPENV Sbjct: 5 SVLAPYRDREIAQKLVEKIKEEAKTL----DGEIRIMHVCGTHEDTITRSGIRSLLPENV 60 Query: 62 EFIHGPGCPVCVLPMGRIDTCVEIASH-----PEVIFCTFGDAMRVPGKQGSLLQAKARG 116 + + GPGCPVC+ P+ I I E+I TFGD ++P GS K+ G Sbjct: 61 KVVSGPGCPVCITPVEDIVAMQLIMKKAREEGDEIILTTFGDMYKIPTPMGSFADLKSEG 120 Query: 117 ADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHI 176 DVR+VYS DA K+A+ENP + VV F GFETT TA L D++NF + H Sbjct: 121 YDVRVVYSIYDAYKMAKENPDKTVVHFSPGFETTTAPTAGMLNAVVNEDIENFKIYSVHR 180 Query: 177 TLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGV 236 + L++Q + IDA + GHVS +IG + F++ + P V+AGFEP D+L + Sbjct: 181 LTPQGIEVLIKQK-SRIDALIDAGHVSTIIGVRGWEFLSEKYGIPQVIAGFEPNDVLLAI 239 Query: 237 VMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLT 296 ++L++ ++V N+Y+R V GN++AQ+ + F V D++WR LGV +G+ + Sbjct: 240 LLLIRMYKEGDARVVNEYKRAVKYEGNVVAQELMNRYFKVV-DAKWRALGVFPKTGLEVR 298 Query: 297 PDYQRFDAEAHFRPAPQQVCDD--PRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMV 354 +++ + +R + D CG VL G P CP FG TC P+ G MV Sbjct: 299 DEFKELEIRNSYRVEVPKNLPDLEKGCLCGAVLRGLAMPTDCPHFGKTCTPRHPIGPCMV 358 Query: 355 SSEGACAAWYQYR 367 S EG C +Y+Y Sbjct: 359 SYEGTCHIFYKYG 371 >UniRef50_D1PPE6 Hydrogenase expression/formation protein HypD n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPE6_9FIRM Length = 371 Score = 496 bits (1278), Expect = e-139, Method: Composition-based stats. Identities = 169/371 (45%), Positives = 222/371 (59%), Gaps = 8/371 (2%) Query: 3 FVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVE 62 +++ +R P L++ +R R H P+RIME+CG HT AI K GL LL VE Sbjct: 7 WLNAFRHPAGAADLVQDIRRRIEH-----HAPVRIMEICGTHTMAIAKAGLRSLLAPGVE 61 Query: 63 FIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGK--QGSLLQAKARGADVR 120 I GPGCPVCV P G +D +E++ P +I T+GD +RVPG +LL+ +A GADVR Sbjct: 62 LISGPGCPVCVTPAGDMDAALELSGRPGLIVATYGDLLRVPGSVRGDTLLRRRAAGADVR 121 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 VYS DA+ LA+ NP R+VVF G+GFETT P TA + A + NF FC P Sbjct: 122 TVYSAADAVDLARANPDREVVFLGVGFETTTPGTAACVLDAAESGLANFSVFCLLKRTEP 181 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 LR+LL PD G+DA L PGHV+ V G DA+ F+ ++ P VV+GFE D+L V LV Sbjct: 182 ALRALLSAPDCGVDALLCPGHVAAVTGVDAFAFLPREYGLPAVVSGFEAGDVLYSVWRLV 241 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 +EN+Y R+V AGN A+ A VF + DS WRGLG I +SG+ L P+Y Sbjct: 242 CMVCGGTPALENEYSRLVTAAGNTAARAAAEAVF-LPADSLWRGLGEIPASGLALRPEYA 300 Query: 301 RFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGAC 360 RFDA + + ++ + P RCG V+ G P QCPLFG C P+ G MVSSEGAC Sbjct: 301 RFDAAVRYGLSRRRGTEPPGCRCGSVIRGVLPPEQCPLFGKVCRPEDPVGPCMVSSEGAC 360 Query: 361 AAWYQYRQQES 371 AA ++YR ++ Sbjct: 361 AAAWKYRPADA 371 >UniRef50_A6LXR6 Hydrogenase formation HypD protein n=9 Tax=Clostridium RepID=A6LXR6_CLOB8 Length = 359 Score = 495 bits (1276), Expect = e-139, Method: Composition-based stats. Identities = 132/354 (37%), Positives = 211/354 (59%), Gaps = 4/354 (1%) Query: 20 LRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRI 79 ++ + + + + +MEVCG HT A+ K G QL+ N+ + GPGCPVCV P G I Sbjct: 7 IKNILNEIQKSPVKKFNVMEVCGTHTQALSKLGFRQLVNPNINLLSGPGCPVCVTPEGYI 66 Query: 80 DTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRK 139 D +E+ + VI TFGD MRV G + +L++ + +G D++++YSP+D++ LA+EN ++ Sbjct: 67 DAAIELLKNSNVILSTFGDMMRVNGSRENLIKQREKGKDIKVLYSPLDSIALAEENKDKE 126 Query: 140 VVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAP 199 +VF G+GFETT P A+ ++ A+ ++++N F + P L +L+QP++ I+ + P Sbjct: 127 IVFLGVGFETTTPIIALAVKIAQEKNIRNISFLIGMKRMEPILHYILKQPNHNINGLMCP 186 Query: 200 GHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVP 259 GHV+ V G D + FI +++ P V+AGFE LD+ + L +Q+ + EN Y+ V Sbjct: 187 GHVAAVKGADYFKFIVEEYNIPAVIAGFEALDIAGALYFLTKQQNKTEKRFENLYKTCVS 246 Query: 260 DAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDP 319 GN A + I++VF + EWRG+GVI+ SG L Y+++DA F + + Sbjct: 247 QEGNKRANELISEVFTY-CEHEWRGIGVIKDSGFTLREKYKKYDASERFGINLSKTSEKN 305 Query: 320 ---RARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQE 370 C E+L GK P++C LFG C P+ G MVS+EG+C+ +Y+YR E Sbjct: 306 YIRACACSEILLGKKLPNKCELFGKGCTPEHPIGPCMVSTEGSCSIFYKYRGVE 359 >UniRef50_C6PPY9 Hydrogenase formation HypD protein n=6 Tax=Clostridiales RepID=C6PPY9_9CLOT Length = 352 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 147/354 (41%), Positives = 214/354 (60%), Gaps = 7/354 (1%) Query: 16 LIEHLRERASHLSYTAERP-LRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVL 74 + E++++ A + + P LRIMEVCG HTH IF+ G+ +LPEN+E I GPGCPVCV Sbjct: 1 MTENIKKTAKEIIQAYDGPKLRIMEVCGTHTHEIFRLGIRSILPENIELISGPGCPVCVT 60 Query: 75 PMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQE 134 P+G ID + +A H V CTFGD +RVPG + SL A+++GA V+IVYSP+DA + A+ Sbjct: 61 PVGFIDEAITLALHHNVTICTFGDLVRVPGSEMSLAGARSKGAKVQIVYSPIDAYEYAKN 120 Query: 135 NPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGID 194 + +VVF +GFETT P + +++++AK ++NF + T+ ++L D Sbjct: 121 HLEEQVVFLSVGFETTTPASCLSVKKAKEAGLENFALLTANKTMPRAYKTL----KGSAD 176 Query: 195 AFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQY 254 AFL PGHV + GT + ++ V+ GF +++ + +++ + S +N Y Sbjct: 177 AFLYPGHVHAITGTKLCESLVNE-GVSGVITGFTANEIMTALAVVITRLQEGGSFFKNCY 235 Query: 255 RRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQ 314 RVV G+ AQ ++++ N DSEWRGLGVIE+SG+ L Y+ FDA + F Sbjct: 236 PRVVTREGSKAAQTIVSELME-NCDSEWRGLGVIENSGLKLKEAYKEFDARSKFNLPKIT 294 Query: 315 VCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQ 368 +P RCG+VL GKCKP C +FG C P GA MVS+EGAC+A+YQY Sbjct: 295 GKSNPACRCGDVLQGKCKPSDCRVFGKGCTPLHPVGACMVSNEGACSAYYQYGG 348 >UniRef50_Q1NML6 Hydrogenase formation HypD protein n=4 Tax=Proteobacteria RepID=Q1NML6_9DELT Length = 408 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 174/415 (41%), Positives = 230/415 (55%), Gaps = 52/415 (12%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M+F+DEYR P +L+ + + T RP IME+CGGHTHAI + G+DQLLP Sbjct: 1 MKFIDEYRDPALARELLAGI-------AATVSRPWVIMEICGGHTHAIIRHGIDQLLPAE 53 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQG------------- 107 +E +HGPGCPVCV P ID + +A PEVIF +FGD +RVPG + Sbjct: 54 IELVHGPGCPVCVTPASLIDQAIALAGRPEVIFTSFGDMLRVPGSRAENGDTIPIFHTAK 113 Query: 108 ------------------SLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFET 149 SL QA+A GADVR+VYSP++A++LA++ P R+VVFF +GFET Sbjct: 114 GGKRDTAAMKNRYGVPVFSLQQARAAGADVRMVYSPLEAVELARQQPHRQVVFFAVGFET 173 Query: 150 TMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTD 209 T P A+ + QA + NF H+ + P + +LL PDN + FLA GHV V G Sbjct: 174 TAPGNAMAVLQAARLGLANFSLLVSHVLVPPAIAALLAAPDNRVQGFLAAGHVCTVTGWQ 233 Query: 210 AYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQA 269 Y + + P+V AGFEP+D+L ++MLV+Q A ++VENQYRR V GN AQ A Sbjct: 234 EYQPLVERYRVPMVPAGFEPVDILAAILMLVRQLEAGRAEVENQYRRAVRRQGNPAAQAA 293 Query: 270 IADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCD------------ 317 + +VF V D EWRGLG I SG+ L P + FDA A P P Sbjct: 294 VEEVFMVV-DQEWRGLGPIPRSGLQLRPQFAAFDAAAKLGPEPAPAAQTAPAAPEQAADA 352 Query: 318 -DPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQES 371 G +L G KP QCP F C+P+ GA MVS EGAC A+Y+ ++ + Sbjct: 353 GANPCISGAILRGIKKPLQCPAFAGACHPENPLGATMVSREGACHAYYRANRRAA 407 >UniRef50_Q3ABW4 Hydrogenase expression/formation protein HypD n=2 Tax=Carboxydothermus hydrogenoformans RepID=Q3ABW4_CARHZ Length = 358 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 135/348 (38%), Positives = 199/348 (57%), Gaps = 2/348 (0%) Query: 22 ERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDT 81 + ++ + IMEVCG HT A+F+ G+ LLP+N+ I GPGCPVCV + Sbjct: 13 REIMEIVQKSDLTINIMEVCGTHTMALFEHGIRSLLPQNINLISGPGCPVCVTGEEIMVE 72 Query: 82 CVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVV 141 E+ V TFGD ++VPG+ +L KA+G V++ YSP +A++ A++NP +VV Sbjct: 73 AFELLEKHNVTLFTFGDMLKVPGEGRTLSILKAQGFSVKVAYSPRNAIEFAEKNPNIEVV 132 Query: 142 FFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGH 201 FFG GFETT P T+ +A + ++NF F T+ P L L+E ID F+ PGH Sbjct: 133 FFGAGFETTAPALGATILEAYTKKLKNFSMFLAVKTVPPALGFLVEHNSL-IDGFILPGH 191 Query: 202 VSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDA 261 VS VIG A+ FI ++ P V GF +LL G+ ++V+ + N Y VV + Sbjct: 192 VSAVIGAKAFRFITENYQIPAAVTGFTAEELLLGISLVVKSILKKEPSYYNAYPHVVREQ 251 Query: 262 GNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRA 321 GN+ AQ+ I +VF GD+ WRG+G I SG+ + Y ++DA + + Sbjct: 252 GNVEAQRIIEEVFE-KGDANWRGIGNIPLSGLFIRERYSQYDARKKYGLREKPPIVPRGC 310 Query: 322 RCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQ 369 +CGE++ G+ P +CPLF C P+ GA MVSSEG+CAA+Y+Y ++ Sbjct: 311 KCGEIMLGRMLPPECPLFAKGCTPEKPVGACMVSSEGSCAAYYKYGRR 358 >UniRef50_D1Y5N2 Hydrogenase expression/formation protein HypD n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y5N2_9BACT Length = 360 Score = 490 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 155/352 (44%), Positives = 198/352 (56%), Gaps = 3/352 (0%) Query: 20 LRERASHLSYTAER--PLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMG 77 L A L+ A R P+R+MEVCG HT +IF+ GL LLPE+V + GPGCPVCV Sbjct: 6 LSSAARTLAELARRTGPVRLMEVCGTHTVSIFRSGLRSLLPEDVALLSGPGCPVCVTDQA 65 Query: 78 RIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPT 137 +D + AS P V C++GD +RVPG+ GSL +A RG DVR+V S MD + LA P Sbjct: 66 DVDQAIAAASLPGVTLCSYGDMLRVPGRGGSLREAAGRGGDVRVVMSAMDVIPLALSEPR 125 Query: 138 RKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFL 197 R+ VFF +GFETT P TA+ LQ+AK V N +H ++P L L + P G+ FL Sbjct: 126 REFVFFAIGFETTTPQTALLLQEAKRLGVGNVSVLAEHKRVLPALELLAQDPQIGVKGFL 185 Query: 198 APGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRV 257 PGHVS +IG + Y +A + V GFE +L + L+ Q + ++ N Y Sbjct: 186 LPGHVSSIIGLEPYGILAEKYRVACAVGGFEGEQILLALCALLSQIVGGEPRIVNAYPSG 245 Query: 258 VPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCD 317 V D GN A+ I + F DS WRGLG I SG+ L Y DA A P Sbjct: 246 VRDRGNPRARALIDECFT-PCDSVWRGLGTIPQSGLKLRAPYACRDARAKLALPPAVNVP 304 Query: 318 DPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQ 369 P RCGEVL G+ P QC LFG C PQ G MVSSEG+C AWY+Y ++ Sbjct: 305 IPGCRCGEVLRGRLAPPQCALFGKNCTPQEPAGPCMVSSEGSCGAWYRYGRR 356 >UniRef50_Q0W4N4 Hydrogenase expression/formation protein (Maturation factor) n=8 Tax=Euryarchaeota RepID=Q0W4N4_UNCMA Length = 357 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 142/359 (39%), Positives = 195/359 (54%), Gaps = 18/359 (5%) Query: 11 EQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCP 70 + L + + A A R ++IM VCG H + I K G+ LLP NV+ + GPGCP Sbjct: 6 QAAKALAGQIEKLA------AGREIKIMHVCGTHEYTITKSGIRSLLPANVKVVMGPGCP 59 Query: 71 VCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALK 130 VCV P ID CVE+A + I CT+GD +RVPG + SL D+RIV S A+ Sbjct: 60 VCVTPQSEIDACVELAEQGK-IICTYGDLLRVPGTKSSLYDTV---GDIRIVQSIAQAVD 115 Query: 131 LAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPD 190 +A++ P R+VVF +GFETT PTTA L +NF H + P ++ L++Q + Sbjct: 116 IARQTPDREVVFMAVGFETTAPTTAAVLLS---NPPENFSIIVSHRLVPPAMKWLMQQGE 172 Query: 191 NGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKV 250 ++ FL PGHV V+G Y P V+AGF+ +++L G+ +LV+Q + + V Sbjct: 173 ANLNGFLLPGHVCTVMGIHEYEAFP----VPQVIAGFDAMEVLYGLYLLVKQIVEGRAVV 228 Query: 251 ENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRP 310 EN Y R V GNL AQ+ +A+VF D WRG VI SG L P ++++DA F Sbjct: 229 ENAYARAVKPEGNLKAQKMMAEVFE-PCDIMWRGFPVIPDSGYKLKPQFEKYDALKKFGI 287 Query: 311 APQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQ 369 + V C E+L G +P C LFG C P GA MVS+EGAC WY Y + Sbjct: 288 ELKDVKCTTGCLCNELLRGVKEPTDCKLFGKACTPLKPVGACMVSTEGACRIWYTYGKA 346 >UniRef50_C1SHT6 Hydrogenase maturation factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHT6_9BACT Length = 357 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 150/366 (40%), Positives = 206/366 (56%), Gaps = 11/366 (3%) Query: 3 FVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVE 62 ++++R + +LI+ + + A+ R MEVCG HT AI KFG+ +LP N++ Sbjct: 1 MIEDFRNADICKKLIKQIEKEATKDV------YRFMEVCGSHTMAIAKFGIKSVLPSNID 54 Query: 63 FIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQG-SLLQAKARGADVRI 121 + GPGCPVCV P ID EIA VI TFGD MRVPG +G +L + K+ G DVRI Sbjct: 55 LVSGPGCPVCVTPQCEIDALFEIAEKGAVI-ATFGDMMRVPGSKGQNLQKMKSEGCDVRI 113 Query: 122 VYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPT 181 V+SP+D LK+A+E ++VVF G+GFETT P A A+ V+N + T+ Sbjct: 114 VFSPLDTLKIAKET-DKEVVFVGIGFETTAPAVAGLAIMAEKAGVKNVSITPYNKTMPEV 172 Query: 182 LRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQ 241 L ++ + I+ F+ PGHV+ V G Y+ I + V+ GFEP+D+L ++ +V+ Sbjct: 173 LSLIISDKNLQINGFVCPGHVTAVTGIGLYDPIVKE-GMAAVITGFEPVDVLSSILEMVR 231 Query: 242 QKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQR 301 Q K N Y RVV D GN A+ I V+ G WRG+G IE SG+ +Y++ Sbjct: 232 QVNTEDFKAVNMYSRVVADEGNAKARDVINAVYEKQG-CWWRGIGFIEESGLAFRKEYEQ 290 Query: 302 FDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACA 361 FDA F + + CGEVL G KP +C LFG C PQ G MVSSEGACA Sbjct: 291 FDAFRKFDVTLEGDDEIAGCSCGEVLKGYIKPTECALFGTACTPQNPVGPCMVSSEGACA 350 Query: 362 AWYQYR 367 A Y+Y Sbjct: 351 AAYKYG 356 >UniRef50_B5Y919 Hydrogenase expression/formation protein HypD n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y919_COPPD Length = 347 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 136/346 (39%), Positives = 190/346 (54%), Gaps = 1/346 (0%) Query: 28 SYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIAS 87 +++++ P IMEVCG HTH +F+ G+ LP V+ I GPGCPVCV + + +A+ Sbjct: 3 TFSSDNPATIMEVCGTHTHELFRTGIRFALPNWVKLISGPGCPVCVTDDKDLAKVILMAT 62 Query: 88 HPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGF 147 + ++ TFGD ++VP GSL ++ G +V++VYSP+DA+K A E+ +FF +GF Sbjct: 63 NYDLTVITFGDMIKVPTPFGSLASLRSEGKNVQVVYSPVDAVKYAMEHQEETCLFFAVGF 122 Query: 148 ETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIG 207 ETTMP A ++ AR+V N +F H ++P L +L ID L PGHVS +IG Sbjct: 123 ETTMPAVAAAIKDRLARNVDNLFFLVNHKRIVPALYALFGSGRVKIDGLLLPGHVSAIIG 182 Query: 208 TDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQ 267 + Y + S + P VV GF +L+G+ +L++ + V N Y VV + GN AQ Sbjct: 183 SKPYEPVLSKYDVPGVVTGFSKDQMLRGINILLKLIVNDKFDVINAYPEVVREEGNKKAQ 242 Query: 268 QAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVL 327 I F V G + WRG G I S + L ++ DAE F V P RC +V+ Sbjct: 243 ALIESYFEVGG-AFWRGFGFIPDSAMVLKKEFSDLDAETQFPVEEPNVSPPPGCRCADVV 301 Query: 328 TGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQESEA 373 G P CPLFG TC Q G MVSSEG CAAW +Y S Sbjct: 302 LGAADPPSCPLFGKTCTLQNPVGPCMVSSEGTCAAWLRYGGATSNG 347 >UniRef50_Q46BF2 Hydrogenase expression/formation protein n=8 Tax=Euryarchaeota RepID=Q46BF2_METBF Length = 372 Score = 484 bits (1246), Expect = e-135, Method: Composition-based stats. Identities = 152/373 (40%), Positives = 210/373 (56%), Gaps = 26/373 (6%) Query: 10 PEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGC 69 PE +L+E +R+ ++PLRIM VCG H I K+GL +LP+N+E I GPGC Sbjct: 13 PEIEKKLLERIRD--------FDKPLRIMHVCGTHERTIAKYGLRSILPKNIEVISGPGC 64 Query: 70 PVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDAL 129 PVCV P I+ + +A TFGD MRVPG SLL AK+ GA+V++VYS DA+ Sbjct: 65 PVCVTPEEDINIAIALA-KSGATVVTFGDMMRVPGSAESLLDAKSEGANVKMVYSIDDAI 123 Query: 130 KLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQP 189 LA++ P +VVFFG+GFETT+P A L + +NF P + L Sbjct: 124 ALAEKKPELEVVFFGIGFETTVPANAAALL---RKTPENFSLLTSQKQTPPAVEFLARDA 180 Query: 190 DNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSK 249 D +DAF+APGHV+ +IGT + +A P+ V+GFEP D+L G+ +L Q S+ Sbjct: 181 D--VDAFIAPGHVATIIGTKPFESLAEK-GFPIAVSGFEPGDILLGINLLQLQAEEGISR 237 Query: 250 VENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAH-- 307 V+N Y R V GN +A + + +VF + DSEWRG+G IE+SG+ L +++ DA Sbjct: 238 VDNGYPRAVKPEGNQIALKIMNEVFETS-DSEWRGIGKIENSGLVLRKEFEEKDAAKKHE 296 Query: 308 --FRPAPQQVC------DDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGA 359 + A + V D R C +LTGK KP QCP FG C P+ G MVS EG Sbjct: 297 DLYASALEDVRKKTGGKDKKRCICAAILTGKAKPSQCPNFGKECTPKNPAGPCMVSQEGM 356 Query: 360 CAAWYQYRQQESE 372 C W++Y ++ Sbjct: 357 CYNWFRYSREGGN 369 >UniRef50_A5ULS2 Hydrogenase expression/formation protein, HypD n=3 Tax=Methanobrevibacter RepID=A5ULS2_METS3 Length = 348 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 138/357 (38%), Positives = 202/357 (56%), Gaps = 15/357 (4%) Query: 14 MQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCV 73 +L++ + E A+ P++IM VCG H HAI + G+ LLP VE I GPGCPVCV Sbjct: 6 KELLDKINEIAT--------PVKIMHVCGSHEHAIMENGIRSLLPPEVEIIAGPGCPVCV 57 Query: 74 LPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQ 133 +P ID C+E+ V TFGD +RVPG + SL +AKA G DVR+VY A+++A+ Sbjct: 58 VPSREIDECLELVDR-GVTVTTFGDMLRVPGSERSLAEAKAEGGDVRVVYGINKAIEIAE 116 Query: 134 ENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGI 193 + VVF GFETT PTTA + A +NF H + P + L+ + + Sbjct: 117 KE-DNDVVFMAAGFETTAPTTAAEIL---AEPPENFSVLSCHRLIPPAIDYLINSGETNL 172 Query: 194 DAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQ 253 +A + PGHV +IGT + ++++D+ P VAGF PLD+L V M+++Q K++N+ Sbjct: 173 NALIEPGHVCTIIGTKPFEYLSTDYGIPQAVAGFNPLDILMSVYMILRQIRDDTPKIDNE 232 Query: 254 YRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQ 313 Y R V D GN++AQ+ I VF V G EWRG I +S + + ++ +++A A + + Sbjct: 233 YNRAVRDEGNIIAQKVIDQVFDV-GSREWRGFPKIPNSILEIKDEFSQYNARAKYDIEVK 291 Query: 314 QVCD-DPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQ 369 V + CG +L G +P C LF +CNP GA MVS EG C ++Y + Sbjct: 292 DVKEAPKGCICGPILRGLARPEDCKLFRKSCNPLHPIGACMVSKEGTCNIAHRYSRD 348 >UniRef50_B2KBC4 Hydrogenase formation HypD protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBC4_ELUMP Length = 346 Score = 480 bits (1235), Expect = e-134, Method: Composition-based stats. Identities = 151/355 (42%), Positives = 214/355 (60%), Gaps = 11/355 (3%) Query: 16 LIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLP 75 +I+ L + A LS R + IMEVCG HT++I K GL LL EN+ I GPGCPVCV Sbjct: 1 MIKKLNDLAKRLS----RKVNIMEVCGTHTNSIAKNGLKSLLNENINLISGPGCPVCVSA 56 Query: 76 MGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDA-LKLAQE 134 G I+ +++A + I TF D +RVPG+ GSL +AKA GADVR++YSP+DA L+ + Sbjct: 57 DGDIEAAIDLALKKDNIIFTFADMLRVPGRNGSLQEAKASGADVRVIYSPLDAFLETGKT 116 Query: 135 NPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGID 194 N + V+ GFETT P A+ L++AK +NF+ F + P + +LL + +N ID Sbjct: 117 N--KTVILLASGFETTAPLIAVCLKKAKEAGFKNFFVFPVLKLINPAITALLSE-ENKID 173 Query: 195 AFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQY 254 FL PGHVS+VIG Y+FI+ F++P V+ GFE +++ ++ +V+Q + ++++N Y Sbjct: 174 GFLLPGHVSLVIGKKPYSFISKKFNKPGVIGGFEAEEIVAALIEIVKQLLEGKAQIQNAY 233 Query: 255 RRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAP-Q 313 + + GN A + I DVF D+ WRG GVI SSG+ + +++ FDA F P Sbjct: 234 P-AIKEEGNQTALKMIEDVFE-PYDAVWRGFGVIPSSGLKIKKEFREFDALIKFNIKPCY 291 Query: 314 QVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQ 368 + +C EVL GK P +CPLFG C P G MVSSEGAC A Y Y + Sbjct: 292 GGSLNKACKCAEVLKGKISPVKCPLFGKKCAPGKPLGPCMVSSEGACNALYNYEK 346 >UniRef50_B1L5X9 Hydrogenase maturation factor n=4 Tax=Archaea RepID=B1L5X9_KORCO Length = 379 Score = 476 bits (1226), Expect = e-133, Method: Composition-based stats. Identities = 136/381 (35%), Positives = 209/381 (54%), Gaps = 22/381 (5%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 MR + + R+ E ++ +RE A + ++IM CG H I +G+ L+PE Sbjct: 1 MRSLTDLRSDEIASRISSKIREIAKRVG-----SVKIMNFCGTHEWTITHYGIRYLMPEE 55 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQ-----GSLLQAKAR 115 VE + GPGCPVC+ P +D V++A + TFGDA R+ G + +L +AK Sbjct: 56 VELVAGPGCPVCITPAYYVDAVVKLAV-EGIRVMTFGDAFRLMGTKARGLPRNLEEAKQD 114 Query: 116 GADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQH 175 GADVRIVYS +DA+K+A++ ++ +FFG+GFETT P T + + +N H Sbjct: 115 GADVRIVYSVLDAIKIAKD--DKESIFFGVGFETTAPATLGPI--SSRNLPENLSLVIAH 170 Query: 176 ITLIPTLRSLLEQ-PDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQ 234 P +R +LE P + I +APGHVS + G DA+ F+A ++ P+VV+GFEP+D+L Sbjct: 171 RLTPPIMRYVLENYPGSPIRGIIAPGHVSTITGADAWRFVAEEYGIPIVVSGFEPIDVLL 230 Query: 235 GVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVH 294 ++ +V+Q +K+ N+Y R V +GN A + + + V D+ WRG+G + SG+ Sbjct: 231 SILEIVKQIDRGEAKLFNEYSRAVKASGNERALKVMEETSDVV-DAAWRGIGFVPKSGLI 289 Query: 295 LTPDYQRFDAEAHFRPAPQQVCD-----DPRARCGEVLTGKCKPHQCPLFGNTCNPQTAF 349 L Y+R+DA + + P +C E+ G KP +CPLF C P++ + Sbjct: 290 LKEKYERYDAFRKYGIKEISKEEWYNDSIPGCKCTEITLGIAKPTECPLFMKVCKPESPY 349 Query: 350 GALMVSSEGACAAWYQYRQQE 370 G MVS EG C W +Y E Sbjct: 350 GPCMVSGEGTCLIWAKYGSSE 370 >UniRef50_C9KK61 Hydrogenase expression/formation protein HypD n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KK61_9FIRM Length = 348 Score = 476 bits (1225), Expect = e-133, Method: Composition-based stats. Identities = 137/335 (40%), Positives = 187/335 (55%), Gaps = 6/335 (1%) Query: 34 PLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIF 93 +RIMEVCG HTH IF+ G+ LLPE VE I GPGCPVCV P+ ID + +A Sbjct: 19 KVRIMEVCGTHTHEIFRLGIRSLLPEAVELISGPGCPVCVTPVSYIDEALYLAEKCHATI 78 Query: 94 CTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPT 153 CTFGD +RVPG G+L +A++RGA V++VY+P+DA+ A E+P + VF +GFETT PT Sbjct: 79 CTFGDLVRVPGTAGTLAEARSRGARVQVVYTPLDAVTYATEHPEEETVFLSVGFETTTPT 138 Query: 154 TAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNF 213 + L+ A+A+ NF + T+ ++ DA+L PGHV + GT Sbjct: 139 ACLALRHAEAQHTANFSLLTANKTMPAAYTAMASH----TDAYLYPGHVCAITGTSLPES 194 Query: 214 IASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADV 273 + + VVAGF +LL+ + ++++ A N Y RVV GN AQ +A Sbjct: 195 LTRE-GISGVVAGFTAGELLRALATILEKVQADRPFFANCYPRVVRPEGNPAAQALVAAY 253 Query: 274 FCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKP 333 D+EWRGLGV++ SG+ L + DA F +P RCG +L G +P Sbjct: 254 ME-PCDAEWRGLGVLKESGLQLREAFAARDARKRFALPAMTGRANPACRCGAILQGLARP 312 Query: 334 HQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQ 368 CPL+G C P GA MVS EGAC+A+Y Y Sbjct: 313 VDCPLYGKACTPDHPVGACMVSREGACSAYYLYGG 347 >UniRef50_O28901 Hydrogenase expression/formation protein (HypD) n=1 Tax=Archaeoglobus fulgidus RepID=O28901_ARCFU Length = 371 Score = 474 bits (1220), Expect = e-132, Method: Composition-based stats. Identities = 146/360 (40%), Positives = 196/360 (54%), Gaps = 18/360 (5%) Query: 13 VMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVC 72 V++L E +RE + ++IM +CG H I K+ L LLPEN+ + GPGCPVC Sbjct: 20 VIRLSEKIRELSKEFE-----SVKIMHLCGTHEDTITKYNLRSLLPENISLLSGPGCPVC 74 Query: 73 VLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLA 132 + P I + + + TFGD RVP + SL +A G D+RIVYS D+LKLA Sbjct: 75 ITPDEDIQMVMHLLEKENITLATFGDMARVPFQGKSLFTLRAEGYDIRIVYSIFDSLKLA 134 Query: 133 QENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNG 192 E+ R VV F +GFETTMP+TAI L K +NFY F H IP + +L E + Sbjct: 135 -ESSDRPVVHFAIGFETTMPSTAIALLDEK----ENFYVFSAHRFFIPAVHALCE--NTT 187 Query: 193 IDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVEN 252 +DAF+ PGHVS +IG Y I + P V+AGFEP D++ + +L++ +V N Sbjct: 188 VDAFINPGHVSTIIGVKPYREILKKYGIPQVIAGFEPEDVMLAIYLLLEAMSDGRREVIN 247 Query: 253 QYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPA- 311 +Y R V + GN+ A +A+ VF D WRGLGV++ SG L +++FDA F A Sbjct: 248 EYSRAVKEEGNVRALEAMDRVFR-KEDWSWRGLGVVKGSGGALAKRFEQFDARKVFEDAF 306 Query: 312 ----PQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYR 367 P + RCG+VL G P CPLF CNP+ GA MVS EG C W Sbjct: 307 ADFQPVEDKSKRLCRCGDVLKGIATPKDCPLFMKACNPRNPVGACMVSVEGTCNIWATSG 366 >UniRef50_A3DJT1 Hydrogenase formation HypD protein n=4 Tax=Clostridium RepID=A3DJT1_CLOTH Length = 349 Score = 473 bits (1219), Expect = e-132, Method: Composition-based stats. Identities = 132/353 (37%), Positives = 199/353 (56%), Gaps = 9/353 (2%) Query: 14 MQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCV 73 M+ +E ++ L + ++IMEVCG HT +IFK G+ L+ ++ I GPGCPVCV Sbjct: 1 MKTLEAIK---KELGEYEGKNIKIMEVCGTHTSSIFKNGIRSLISPRIQLISGPGCPVCV 57 Query: 74 LPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQ 133 ID VE + TFGD M+V G + SL +AKA G +V+I+YSP+ A+K+A Sbjct: 58 TASSYIDRLVEYSLKDNHCVLTFGDMMKVKGHKLSLTEAKATGGNVKILYSPLSAVKIAI 117 Query: 134 ENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGI 193 ++P + +F +GFETT P A+ +++ +++N T+IP + + E + I Sbjct: 118 KSPETQFIFAAVGFETTAPIYALMIEEIIKNNIKNLKLMTSIKTIIPAISYICEN-EKNI 176 Query: 194 DAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQ 253 DAFL PGHVS++IG+ Y +A + +P V+ GFE ++ + +++Q ++N Sbjct: 177 DAFLCPGHVSVIIGSSVYTDMALKYRKPFVIGGFEGGHIIAAIYEIIRQISNNEYSMKNM 236 Query: 254 YRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDA-EAHFRPAP 312 Y+ V GN A+ I F D WRG+G+I++SG+ L +Y+ FDA F A Sbjct: 237 YQSAVSPEGNQKAKSLIDKYFE-AADDYWRGIGIIKNSGLRLRTEYRDFDAGSTIFEDAD 295 Query: 313 QQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQ 365 +C +V+ G+ P QCPLFG C P A GA MVSSEGAC WY+ Sbjct: 296 ---AAPSGCKCADVILGRITPAQCPLFGKACTPLNAVGACMVSSEGACGIWYR 345 >UniRef50_A1SU74 Hydrogenase formation HypD protein n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SU74_PSYIN Length = 372 Score = 463 bits (1193), Expect = e-129, Method: Composition-based stats. Identities = 131/366 (35%), Positives = 194/366 (53%), Gaps = 11/366 (3%) Query: 5 DEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFI 64 D ++ E V +L + ++ A+ ++ PL+IM +CGGH +AI ++ + Q LP +++ I Sbjct: 10 DAFKDREIVNKLAQEIKLIAAQMA-----PLKIMHICGGHENAIVRYAIRQFLPAHIKVI 64 Query: 65 HGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYS 124 GPGCPVCV P+ ID + +A P+V TFGD +RVP SL +A+ G V++VYS Sbjct: 65 AGPGCPVCVCPVESIDEAITLALLPKVTLLTFGDILRVPATNSSLEEARVNGGSVKVVYS 124 Query: 125 PMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRS 184 P+DA+K AQ++P + VFF +GFETT A + +N +F + + P L+ Sbjct: 125 PLDAIKFAQDSPQQTFVFFSVGFETTAAGIAGLIHSGVP---KNLFFLIANRYMPPVLKL 181 Query: 185 LLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKI 244 L+E D+ + FL GH + + G Y+F+ +F P AGFEP+D+L + L+ Sbjct: 182 LMEVHDDSLQGFLLAGHATAITGLGVYDFMRDEFKLPCATAGFEPVDILLAIRELLTLIK 241 Query: 245 AAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDA 304 +V N Y RV+ + GNL AQQ + +VF + WRG+ +E S L Y DA Sbjct: 242 NDQHQVINCYSRVIKNEGNLKAQQCLKEVFDL-IPGVWRGIDKVEDSAYVLKDKYAFLDA 300 Query: 305 EAHFRPAPQQVC--DDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAA 362 P P C V+ G+ +P C LF C P FG MVS EG C Sbjct: 301 RKQLACKPPYSPQAHHPSCLCHRVMLGEVEPQDCKLFKKACTPSKPFGPCMVSPEGTCHV 360 Query: 363 WYQYRQ 368 Y Y + Sbjct: 361 RYSYSE 366 >UniRef50_A4YFA0 Hydrogenase formation HypD protein n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YFA0_METS5 Length = 375 Score = 459 bits (1183), Expect = e-128, Method: Composition-based stats. Identities = 133/370 (35%), Positives = 191/370 (51%), Gaps = 12/370 (3%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 + + YR P L + LR R L+ + + IM VCG H I +G+ LLPEN Sbjct: 5 LSLLKYYRDP----TLAKALRLRIEELAKKIQENIMIMHVCGSHEWTITHYGIRSLLPEN 60 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 VE GPGCPVC+ P ID V++A V+ T+GD R G + SL +A+A G DVR Sbjct: 61 VEVRAGPGCPVCITPATDIDDAVKLA-MDGVVVTTYGDMSRARGTKMSLEEARAMGGDVR 119 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 ++Y DA+K+A+ P + +FF +G +TT P TA + + N F + Sbjct: 120 VIYGVQDAVKMARREPNKDFLFFAVGMDTTAPATAFEMMKGVP---DNLSFLVSYRYTPA 176 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 S+++ GIDAF++ GH V G Y +P+V GFEP+D+L + M++ Sbjct: 177 IQGSVMDSNVLGIDAFISAGHSVTVTGLRPYYEYFLRSKKPMVATGFEPIDVLMSIYMIL 236 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 +Q K+EN+Y R V GN+ AQQ + VF + D RG+ V +G L ++ Sbjct: 237 KQIDEGKPKIENEYTRSVTWEGNVKAQQVMERVFDL-EDGYVRGVAVFPKAGFRLKEEFS 295 Query: 301 RFDAEAHFRPAPQQVCDDP---RARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSE 357 + DA + + D ARCGEV+ G P +CPL+G TC P+ GA MVS E Sbjct: 296 KKDARVQYGLKDRTKSKDEYVAGARCGEVVMGLIDPPECPLYGKTCKPEDPKGAPMVSQE 355 Query: 358 GACAAWYQYR 367 G C W +R Sbjct: 356 GTCWIWATHR 365 >UniRef50_C5CEU3 Hydrogenase formation HypD protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEU3_KOSOT Length = 338 Score = 450 bits (1159), Expect = e-125, Method: Composition-based stats. Identities = 137/337 (40%), Positives = 196/337 (58%), Gaps = 4/337 (1%) Query: 33 RPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVI 92 + R+ME+CG HTHA+ ++GL +L E +E + GPGCPVCV ID + + I Sbjct: 4 KKYRVMEICGTHTHALMRYGLKELYSERLELVCGPGCPVCVTSQSDIDRILYLCDLGMRI 63 Query: 93 FCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMP 152 + TFGD M+VPGK G+L + KA GA VR VY+P+ + +++P R VF +GFETT P Sbjct: 64 Y-TFGDLMKVPGKNGNLRERKALGACVREVYNPLWIVDDMKKDPARGAVFVAIGFETTAP 122 Query: 153 TTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYN 212 A +++ + ++N Y + + P + +LLE +N +D F+ PGHVS +IG Y Sbjct: 123 LIASLIEEIERERIENLYVYLLLKLIPPAMEALLEDEENKLDGFICPGHVSTIIGERPYI 182 Query: 213 FIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIAD 272 +A +P V+AGF +L + + + + V N Y V GNL A++ I + Sbjct: 183 KLAEKVKKPFVIAGFTREELTVALEKMSEMLEKSAYGVVNVYASAVKPEGNLDAREKIKN 242 Query: 273 VFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCK 332 F V D+ WRGLG I +SG+ L Y+RFD AHF+ + V + CGEVLTGK K Sbjct: 243 FFEV-TDTLWRGLGTIPNSGLKLREKYRRFDVMAHFQ--MENVSSEDPCPCGEVLTGKIK 299 Query: 333 PHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQ 369 P +C LFG C P+T G MVSSEGAC A + Y ++ Sbjct: 300 PEECQLFGTLCLPETPVGPCMVSSEGACHASFLYGRK 336 >UniRef50_Q2Y8F6 Hydrogenase formation HypD protein n=8 Tax=Proteobacteria RepID=Q2Y8F6_NITMU Length = 385 Score = 446 bits (1148), Expect = e-124, Method: Composition-based stats. Identities = 135/371 (36%), Positives = 194/371 (52%), Gaps = 20/371 (5%) Query: 13 VMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVC 72 + ++ + E +RP+RIM VCGGH +I G+ LPE VE I GPGCPVC Sbjct: 5 AQEWLKKIHEL------PLDRPVRIMNVCGGHERSITMAGIRSALPECVELIAGPGCPVC 58 Query: 73 VLPMGRIDTCVEIASHPEVIFCTFGDAMRVPG-----KQGSLLQAKARGADVRIVYSPMD 127 V P + +++A ++I TFGD +RVP + SL QAKA GADVR + SP + Sbjct: 59 VCPEEDVYQAIQLALRTDMILVTFGDMLRVPVNVPKKEVRSLEQAKAAGADVRPIASPRE 118 Query: 128 ALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLE 187 A+++AQ+N R+VVFF GFETT A L + N P + LL+ Sbjct: 119 AVRIAQQNAKRQVVFFAAGFETTTAPVAAMLLEGVP---DNLSILLSARRTWPAVAMLLD 175 Query: 188 QPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAH 247 G D +APGHVS V+G + +NF+ P VAGF+P+ LL + +++Q + Sbjct: 176 SDAPGFDGLVAPGHVSTVMGPEEWNFVFEKHDIPTAVAGFQPVSLLAAMYSVLRQLLEGK 235 Query: 248 SKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAH 307 ++N Y +V GN AQ +A+ + D+ WRG+GVI SSG L + + DA Sbjct: 236 RFLDNCYPELVRPGGNRAAQAQLAEALN-DTDANWRGIGVIPSSGFSLQKRFAKNDARLQ 294 Query: 308 FRPAPQQVCD-----DPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAA 362 F + P C V+ G+ P+QC ++G+ C P+T G MVS EGAC Sbjct: 295 FPDFDTENRKRAGQMPPGCECASVVLGRINPNQCKIYGHACTPKTPVGPCMVSDEGACRI 354 Query: 363 WYQYRQQESEA 373 W+ +E+ A Sbjct: 355 WWAAGVRENTA 365 >UniRef50_Q6API1 Related to hydrogenase isoenzymes formation protein n=1 Tax=Desulfotalea psychrophila RepID=Q6API1_DESPS Length = 368 Score = 443 bits (1141), Expect = e-123, Method: Composition-based stats. Identities = 120/372 (32%), Positives = 186/372 (50%), Gaps = 12/372 (3%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M +++ +PE L +P+R+M VCG H AI ++G+ + LP+ Sbjct: 1 MDVINQLPSPE----------ALLEELHRVVSKPIRLMVVCGTHNRAILRYGIREELPDF 50 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGAD-V 119 +E + GPGC VCV+P G +D V++A P+VI T D ++V G + SL G V Sbjct: 51 IELVAGPGCSVCVMPTGHVDAFVKVARQPDVITATCEDLLKVRGSKESLADVLNEGVHRV 110 Query: 120 RIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLI 179 I+ SP AL+LA + VV+ +GFE T P+ A T+ +A V NF L Sbjct: 111 EIISSPRQALELAYVEEDKIVVYPAVGFEATAPSIAETILEAAQNGVGNFCVIPSIRLLP 170 Query: 180 PTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVML 239 PT+ +LL P I L H++ + T+AY +A +AGFE ++LQG++ + Sbjct: 171 PTIDALLLDPQLSIQGLLCSDHINTISDTEAYADLARKHSLSCCIAGFEKAEILQGILSM 230 Query: 240 VQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDY 299 V+Q S V+ V A++ + +VF ++ WRGLG I SG + + Sbjct: 231 VKQIHRGESMVDASGAMVYSMEETARARRVVEEVF-FPTETAWRGLGSIAESGFVIRDEL 289 Query: 300 QRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGA 359 +DA F + D C E+++G+ P CP FG C Q G M+S+EG Sbjct: 290 ALYDATKRFNVRFAEGTDQCMCHCNEIISGRALPPDCPAFGMACTLQNPVGPCMISNEGI 349 Query: 360 CAAWYQYRQQES 371 CAA+++Y+ + S Sbjct: 350 CAAYFKYKLESS 361 >UniRef50_A7H7N4 Hydrogenase formation HypD protein n=5 Tax=cellular organisms RepID=A7H7N4_ANADF Length = 379 Score = 442 bits (1138), Expect = e-123, Method: Composition-based stats. Identities = 133/369 (36%), Positives = 188/369 (50%), Gaps = 15/369 (4%) Query: 6 EYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIH 65 ++R P + L E + + R + +M VCG H AI +FGL +LP +E I Sbjct: 11 KFRDPVRARALAEAIAREVDAIG----RTVPVMHVCGSHEQAIARFGLRAVLPPGLELIM 66 Query: 66 GPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSP 125 GPGCPVCV +D V +A + CT+GD +R+PG SL A+A GA V +VYS Sbjct: 67 GPGCPVCVTDGPEVDEAVALALQGARV-CTYGDMLRLPGTARSLADAQADGAKVEVVYSV 125 Query: 126 MDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSL 185 A++LAQ++P +VVF G GFE T T A A +NF H + + + Sbjct: 126 SQAVELAQKHPEDEVVFLGSGFE---TTAVATAAVALASPPKNFSILSVHKYVPAAMNVV 182 Query: 186 LEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIA 245 E P I+ ++A GH +++ G + A+ +P+VVAGFEPLD+L ++ LV+ Sbjct: 183 AESPQTNIEGYIAAGHAAIITGWGIFEPFAARTGKPVVVAGFEPLDILAAILQLVELMRQ 242 Query: 246 AHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAE 305 ++V N Y R V GNL AQ+++ VF WRG+ + + L P+Y DA Sbjct: 243 GKAEVANVYPRCVTKEGNLPAQRSLWKVFR-PVTGTWRGIAEVRDGNLDLRPEYAHLDAR 301 Query: 306 AHFRPAPQQVCD------DPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGA 359 FR V D CG ++ G P C LFG TC P++ GA MVSSEG Sbjct: 302 KRFRIDTAPVRDEDAEEAAKGCICGSIMLGLANPGDCALFGKTCVPESPVGACMVSSEGQ 361 Query: 360 CAAWYQYRQ 368 C W+ Y Sbjct: 362 CRIWHTYGG 370 >UniRef50_Q8NKV0 Membrane-bound NiFe hydrogenase n=1 Tax=Acidianus ambivalens RepID=Q8NKV0_ACIAM Length = 394 Score = 440 bits (1133), Expect = e-122, Method: Composition-based stats. Identities = 132/380 (34%), Positives = 195/380 (51%), Gaps = 22/380 (5%) Query: 7 YR-APEQVMQLIEHLRERASHLSYTAER-PLRIMEVCGGHTHAIFKFGLDQLLPENVEFI 64 +R E + E + + A +S R ++IM CG H +GL L+PE VE I Sbjct: 11 FRENSELAKSITEQIHKLAPIVSKEIGREKIKIMNFCGSHEWVTTHYGLRALMPETVELI 70 Query: 65 HGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQ-------GSLLQAKARGA 117 GPGCPVCV P I+ +++A ++ TFG +V + GSL A+A GA Sbjct: 71 PGPGCPVCVTPSSDIENVIKLAMEGYTVY-TFG-MFQVTTVKHYKKDEVGSLAAARALGA 128 Query: 118 DVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHIT 177 DVRIVYS +DA++ A+++ + VFFG+GFETT P+ A+ ++ + +N F+ Sbjct: 129 DVRIVYSFVDAIEDAKKS-GKPSVFFGIGFETTTPSYAVLFEK--EKVPKNLLFYSSLKL 185 Query: 178 LIPTLRSLLEQPDNG----IDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLL 233 P + + + + PGHVS +IG +++F ++ P VV GFEP+D+L Sbjct: 186 TAPAAEFAVRLHKSKGLVPVSGVIGPGHVSSIIGAISWDFFPREYKIPAVVTGFEPIDVL 245 Query: 234 QGVVMLVQQKIAAHSKVEN-QYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSG 292 GV+ ++Q + N +Y+RVV GN+ AQ I VF + D+ WRG+G I SG Sbjct: 246 AGVLKILQDLHSGDITYTNLEYKRVVKYQGNVYAQVEINKVFKLV-DAIWRGIGSIPKSG 304 Query: 293 VHLTPDYQRFDAEAHFRPA--PQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFG 350 + L +Y ++A P P RC EV G P CP+F C P +G Sbjct: 305 LDLREEYSMYNAREQLGIKEKPWDYDLPPGCRCNEVTLGIAYPTDCPMFMKACTPARPWG 364 Query: 351 ALMVSSEGACAAWYQYRQQE 370 MVS EGACA W ++ E Sbjct: 365 PCMVSMEGACAVWARFGSTE 384 >UniRef50_Q8TYR6 Hydrogenase maturation factor n=1 Tax=Methanopyrus kandleri RepID=Q8TYR6_METKA Length = 350 Score = 439 bits (1131), Expect = e-122, Method: Composition-based stats. Identities = 131/355 (36%), Positives = 174/355 (49%), Gaps = 11/355 (3%) Query: 14 MQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCV 73 + + L R + T +R + IM VCG H I + GL LLPENV + GPGCPVCV Sbjct: 6 REFVRKLVRRIHKEAETLDRDVTIMHVCGSHERTIVEHGLRSLLPENVRLVCGPGCPVCV 65 Query: 74 LPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQ 133 G + ++ A+ ++ C FGD RVP GSL DVR+V S A ++A Sbjct: 66 TTTGELAAAIK-AAEDGMVVCAFGDVYRVPTPVGSLSSCD---GDVRVVQSVRKAEEIA- 120 Query: 134 ENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGI 193 E+ R V++ +GFETT PTTA L NFY H + P + LLE + + Sbjct: 121 ESEDRDVLYLAVGFETTAPTTAAVLLDDPP---SNFYVLSAHRLIPPAMEWLLESGECRL 177 Query: 194 DAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQ 253 DAF+ PGHVS +IGT Y +A + P VVAGFEP D+L V+ ++ V N+ Sbjct: 178 DAFICPGHVSTIIGTGPYESVARE--LPCVVAGFEPEDVLIAVLACLKMLRRGRVGVTNE 235 Query: 254 YRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQ 313 Y R V D GN +A++ + F D WRG I S + L D DA Sbjct: 236 YLRAVEDRGNPVAKELMERAFE-PEDRPWRGFPTIPESALKLREDLADHDAIEIGIRPDY 294 Query: 314 QVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQ 368 + D C +L G +P CPLFG C P G MVS EG C Y++ Sbjct: 295 TLGHDESCICDRILRGLAEPRDCPLFGTKCTPTDPVGPCMVSEEGPCFIEYRFGG 349 >UniRef50_C9LR02 Hydrogenase expression/formation protein HypD n=1 Tax=Dialister invisus DSM 15470 RepID=C9LR02_9FIRM Length = 349 Score = 436 bits (1121), Expect = e-121, Method: Composition-based stats. Identities = 134/342 (39%), Positives = 179/342 (52%), Gaps = 6/342 (1%) Query: 21 RERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRID 80 E L RP++IMEVCG HT A++K GL Q+L ++ + GPGCPVCV P ID Sbjct: 4 NEIIRWLREYDGRPVKIMEVCGTHTSALYKTGLRQILSPKIQLLSGPGCPVCVTPTAYID 63 Query: 81 TCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKV 140 VEI+ FGD + VPG + SL +A+ RGA V Y+P DALK A+E Sbjct: 64 KLVEISFRGGHRVLAFGDMLAVPGTEMSLAEARDRGASVDFFYNPEDALKKAEEEKETIF 123 Query: 141 VFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPG 200 V +GFETT P A +++A R + N T+ TL L + ID FL PG Sbjct: 124 VLAAVGFETTAPVWATVVKEADERHISNLKLLTALKTMPETLGELCTAGN--IDGFLCPG 181 Query: 201 HVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPD 260 HV+++ G + Y ++ + +P+V+ GF LL V LV N Y VV + Sbjct: 182 HVAVITGAERYRALSETYGKPMVIGGFTADLLLSAVARLVLAVNKGQGGFWNDYGSVVTE 241 Query: 261 AGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPR 320 GN+ A + + F GD+ WRGLGV+++SGV+L Y +DA + + Sbjct: 242 KGNVKAWERVGAFFE-KGDALWRGLGVVKNSGVYLKEKYHLYDAGSR---GLVEDHIPAG 297 Query: 321 ARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAA 362 RCG +L GK P CP FG TC P GA MVSSEGAC Sbjct: 298 CRCGNILLGKNMPKDCPHFGRTCTPSHPVGACMVSSEGACCI 339 >UniRef50_A1S0N0 Hydrogenase formation HypD protein n=6 Tax=Thermoprotei RepID=A1S0N0_THEPD Length = 411 Score = 433 bits (1113), Expect = e-120, Method: Composition-based stats. Identities = 128/382 (33%), Positives = 184/382 (48%), Gaps = 23/382 (6%) Query: 5 DEYRAPE-QVMQLIEHLRERASHLSYTAERPLRI--MEVCGGHTHAIFKFGLDQLLPENV 61 +R+ L ++ + + R RI M+ CG H I FGL L+PE V Sbjct: 17 KAFRSNARLAGALRGYIARKFEEIRAREGRDYRIKIMDFCGTHEWTIVHFGLRSLMPEGV 76 Query: 62 EFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQ-----GSLLQAKARG 116 E + GPGCPVCV P I+ +E++ V T+GD ++ SL +A+A G Sbjct: 77 ELVAGPGCPVCVTPSWYIERAIELSL-SGVTVYTYGDTFKLRAVNPVDGVSSLEEARAAG 135 Query: 117 ADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHI 176 VR+V S +DA++ A + + VF G+GFET P A + +N Sbjct: 136 GRVRLVVSLVDAVRDASRHGG-ESVFLGIGFETVAPGYARAVVSGSL--PENLKLMSLVK 192 Query: 177 TLIPTL----RSLLEQP-DNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLD 231 P + L ++P + + +APGHVS V G A+ +A F P+VV+GFEP+D Sbjct: 193 LTPPAMFYSLDILRDKPTEPPVMGVIAPGHVSTVTGAKAWEPVAEQFQVPVVVSGFEPID 252 Query: 232 LLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESS 291 +L G+ +++Q V+ +Y R V G+L AQ AI + F D+ WRG+G + S Sbjct: 253 VLMGIAEIMRQLARGEYGVKVEYTRAVTWEGDLEAQAAIHEAFEAVDDA-WRGIGFLPLS 311 Query: 292 GVHLTPDYQRFDAEAHFRPAPQQVCD-----DPRARCGEVLTGKCKPHQCPLFGNTCNPQ 346 G+ L Y R DA HF P RC EV GK KP CP+F C P+ Sbjct: 312 GLRLREKYGRLDALRHFGIEELTPEKWRKDTPPGCRCAEVTLGKAKPTDCPMFMKKCTPE 371 Query: 347 TAFGALMVSSEGACAAWYQYRQ 368 +G MVS EG CA W ++ Sbjct: 372 KPYGPCMVSLEGTCAVWARFGG 393 >UniRef50_A4XJQ2 Hydrogenase formation HypD protein n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XJQ2_CALS8 Length = 348 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 131/355 (36%), Positives = 206/355 (58%), Gaps = 11/355 (3%) Query: 14 MQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCV 73 MQ E + E +++ R L+I+EVCG HT +I+K G + ++FI GPGCPVCV Sbjct: 1 MQTAELIWEIKNNIEK-IGRSLKIIEVCGTHTVSIYKNGFPAVFEGYIDFISGPGCPVCV 59 Query: 74 LPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQ 133 G ID VE++ E TFGD ++VPG SL QA+A G ++++YSP+DA++ + Sbjct: 60 THEGYIDRLVELS--SEWTIYTFGDLLKVPGSSKSLSQARANGGKIKVMYSPVDAVEHLE 117 Query: 134 ENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGI 193 N KV+F +GFETT P A++L++ + ++N F C+ T+ L+S L+ + Sbjct: 118 NN--EKVIFAAVGFETTAPAFALSLEKVIEKGLKNVKFACELKTIDEPLKSFLQNH-IRV 174 Query: 194 DAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQ 253 D + PGHV+ VIG D + F+ F V++GFE D+L ++ + Q ++ V+N+ Sbjct: 175 DGIILPGHVATVIGVDGFKFV-ERFKVASVISGFEGYDILLSLLSITQDILSEDFTVKNE 233 Query: 254 YRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQ 313 Y+RVV GN++A+ I F + +RGLG+I G+ + ++ + + + Q Sbjct: 234 YKRVVKKEGNVIAKGYIEKYFE-RTSAFFRGLGLIPGGGLKIKDEFSEYSIDISYDHTKQ 292 Query: 314 QVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQ 368 + D RC +VLTGK KP +CPLF C P + GA MVS EG+C A+++Y + Sbjct: 293 K---DSLCRCADVLTGKIKPFECPLFEKVCTPISPKGACMVSQEGSCNAYFRYGK 344 >UniRef50_B9MR89 Hydrogenase formation HypD protein n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MR89_ANATD Length = 351 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 135/358 (37%), Positives = 209/358 (58%), Gaps = 12/358 (3%) Query: 14 MQLIEH---LRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCP 70 MQ +E + + R LRI+EVCG HT +I++ G L ++FI GPGCP Sbjct: 1 MQTLEKGNPIINTIKNNIEKIGRQLRIIEVCGTHTVSIYRNGFHSLFKGYIDFISGPGCP 60 Query: 71 VCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALK 130 VCV G ID +E+A I+ TFGD M+VPGK SL +AKA+G ++I+YSP+DA++ Sbjct: 61 VCVTHEGYIDNLIELAKMNYTIY-TFGDLMKVPGKSMSLAEAKAKGGKIKIMYSPVDAVE 119 Query: 131 LAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPD 190 E + + +GFETT+P A++L++ +D++N F C+ T+ L+ LL+ Sbjct: 120 NIAE--DEEAIIAAVGFETTVPAFALSLEKVLEKDLKNVKFACELKTIDQPLKVLLKDH- 176 Query: 191 NGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKV 250 +D + PGHV+ ++G D + F+ +F P V++GFE D+L ++ L Q + V Sbjct: 177 IKVDGLILPGHVATILGVDGFKFV-EEFEIPSVISGFEKYDILLSLLSLTQSILDNDFTV 235 Query: 251 ENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRP 310 +N+Y+R+V GN +A++ I F D+ +RGLG+IE G+ L +Y F + + Sbjct: 236 KNEYKRIVKKEGNTVAKRYIERFFE-RTDAYFRGLGLIEGGGLRLKSEYSSFSVQLKYD- 293 Query: 311 APQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQ 368 + + RC +VLTGK KP +CPLF C PQT GA MVS EG+C A++++ + Sbjct: 294 --YESFSNSACRCADVLTGKLKPFECPLFEKVCTPQTPKGACMVSQEGSCNAYFRFGK 349 >UniRef50_B4S326 Hydrogenase formation HypD protein n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4S326_ALTMD Length = 377 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 180/367 (49%), Gaps = 16/367 (4%) Query: 14 MQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCV 73 M +E L + S +P RI+ VCGGH AI + G L N+ I GPGCPVC+ Sbjct: 1 MYSVESLLRDIKNTS--LSKPFRILNVCGGHERAITRAGFRTLFQHNIHLIPGPGCPVCI 58 Query: 74 LPMGRIDTCVEIASHPEVIFCTFGDAMRVP-----GKQGSLLQAKARGADVRIVYSPMDA 128 P I + +A + V+ +FGD +RVP G SL+ AK +GAD+R + SP +A Sbjct: 59 CPEEDIAYAIHLAINENVVIVSFGDMLRVPVEHEMGGCSSLIDAKNQGADIRPISSPQEA 118 Query: 129 LKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQ 188 + +A E P + +VFF +GFETTM A TL NF P + +LE Sbjct: 119 VSIALEEPRKVIVFFAVGFETTMAPIAATLLNDLPN---NFKVLLSGRLTWPAVAHVLES 175 Query: 189 PDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHS 248 N DA +APGHV+ ++G++ + F + P+ +AGF P LL + L+ Sbjct: 176 QPNTFDALIAPGHVATIMGSEEWQFAIDHHNLPVSIAGFHPESLLLSLQTLLGNCSNKVV 235 Query: 249 KVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHF 308 + N+Y VV GN A+ I F + D+ WRG+GVI SG DA + Sbjct: 236 TLSNRYPEVVKQNGNAAAKAIINKAFTIV-DAHWRGIGVIPGSGFSFASRLSHLDATNDY 294 Query: 309 RPAP-----QQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAW 363 P Q + + C +V+ GK P CP FG C P + GA MVS EGAC W Sbjct: 295 APVDFPSQCAQNVPETTSPCEKVILGKMAPDACPFFGQECKPASPKGACMVSDEGACRIW 354 Query: 364 YQYRQQE 370 Y ++ Sbjct: 355 YSSGERS 361 >UniRef50_A0L606 Hydrogenase formation HypD protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L606_MAGSM Length = 366 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 105/360 (29%), Positives = 165/360 (45%), Gaps = 14/360 (3%) Query: 21 RERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRID 80 ++ + P+++M +CGG + Q L V + GPGCPVCV P I Sbjct: 8 QKLLALTRLQVSEPIKVMNLCGGFARFWAESDWHQSLSRVVHIMPGPGCPVCVCPEAEIR 67 Query: 81 TCVEIASHPEVIFCTFGDAMRVPGKQG-----SLLQAKARGADVRIVYSPMDALKLAQEN 135 + +A +VI FGD + VP G +L A+ GADV V +P +A++LA + Sbjct: 68 AAMHLAVREDVILAAFGDMLSVPISYGAAGYATLDGARQDGADVVAVANPHEAVELALRH 127 Query: 136 PTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNG-ID 194 PTR+VVFF GFET A Q A NF P + ++L Q + Sbjct: 128 PTREVVFFASGFETVSAPLAA---QFLAGVPDNFSILNALRLSWPVVDTMLSQHERRPFK 184 Query: 195 AFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQY 254 A +APGHV+ ++G++ + F + + P+ ++GF L + +V+Q ++ +++ Q Sbjct: 185 AIIAPGHVAAIVGSECWRFAVTQYGIPVSISGFSDRSFLASLDTVVRQVVSGKPQLDIQE 244 Query: 255 RRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHF----RP 310 + GNL A + +VF V WRG+G + SG L + DA F Sbjct: 245 PYRINPRGNLYALTCVNNVFDVQ-SVHWRGIGRVPDSGYALREAWHHRDARKRFHALATF 303 Query: 311 APQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQE 370 P+ C ++ GK PH C + + C P G M S +GAC ++ + E Sbjct: 304 QPEMGDMPNDCLCASIVMGKQSPHDCLRYAHDCQPDNPVGPCMASVDGACRIMWERQHSE 363 >UniRef50_B9Y0D1 Putative uncharacterized protein n=1 Tax=Helicobacter pylori B128 RepID=B9Y0D1_HELPY Length = 221 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 72/196 (36%), Positives = 116/196 (59%), Gaps = 2/196 (1%) Query: 154 TAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNF 213 +A L AK ++N +F HI + P++ ++L+ P I+A LAP HVS++ G Y+ Sbjct: 2 SASVLLNAKKEKLKNLFFHINHILVPPSVSAILKDPACQINALLAPSHVSVISGAQIYSP 61 Query: 214 IASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADV 273 + F P++V+GFEP+D+L+ V+ML++Q + +K+E QY+R V GN+ AQ + Sbjct: 62 LVDRFKLPIIVSGFEPVDILESVLMLLKQALNKEAKLEIQYKRAVSFEGNVKAQALVNAC 121 Query: 274 FCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFR--PAPQQVCDDPRARCGEVLTGKC 331 V + EWRGLG I+ S + L + +DAE F+ + + + ++ +CGE+L G Sbjct: 122 MEVRENFEWRGLGNIKRSALKLKEAFASYDAEKVFKEYLSHKIIKENKACKCGEILKGIA 181 Query: 332 KPHQCPLFGNTCNPQT 347 KP C LF TC P+T Sbjct: 182 KPLDCSLFATTCTPKT 197 >UniRef50_UPI00019137D4 hydrogenase expression/formation protein HypD n=5 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI00019137D4 Length = 114 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 106/113 (93%), Positives = 110/113 (97%) Query: 260 DAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDP 319 DAGN+LAQQAIADVFCVNGDSEWRGLGVIESSGVHLTP+YQRFDAEAHFRPAPQQV DDP Sbjct: 1 DAGNMLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPEYQRFDAEAHFRPAPQQVYDDP 60 Query: 320 RARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQESE 372 RARCGEVLTG+CKPHQCPLFG TCNP+TAFGALMVSSEGACAAWYQYRQQE E Sbjct: 61 RARCGEVLTGRCKPHQCPLFGKTCNPETAFGALMVSSEGACAAWYQYRQQECE 113 >UniRef50_Q9REL6 Hydrogenase maturating protein HypD (Fragment) n=1 Tax=Rhodobacter sphaeroides RepID=Q9REL6_RHOSH Length = 123 Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats. Identities = 65/123 (52%), Positives = 85/123 (69%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M+F E+R P L+ + RA + T RPL IME+CGGHTHAIF++GLD+L+ E Sbjct: 1 MKFASEFRDPALARSLLAAIAARADEMGATRARPLHIMEICGGHTHAIFRYGLDRLVHEG 60 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 +EFIHGPGCPVCVLP+ + + I P +I TF + +PG +GSLLQAKARGAD+R Sbjct: 61 IEFIHGPGCPVCVLPIPPLHQSIPIPHPPHLILTTFPHPIPLPGARGSLLQAKARGADIR 120 Query: 121 IVY 123 +VY Sbjct: 121 MVY 123 >UniRef50_Q111Q4 Hydrogenase isoenzyme formation protein HypD n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q111Q4_TRIEI Length = 93 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 38 MEVCGGHTHAI-FKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTF 96 M VC ++ I K+ L+ + +EF+ G G L RID + ++ E+IF T Sbjct: 1 MPVCAPNSLVIVAKYNLNTIECGYLEFLQGYGEASWSLAPQRIDHAIALSQKTEIIFTTC 60 Query: 97 GDAMRVPGKQGSLLQAKARGADVRIVYSPMDAL 129 A G Q +L +AK +GAD++I+ SP AL Sbjct: 61 EAANSYCGSQQNLAEAKTQGADIQIISSPQQAL 93 >UniRef50_Q1AUA4 Hydrogenase maturation factor-like protein n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AUA4_RUBXD Length = 134 Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 45/71 (63%) Query: 205 VIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNL 264 +IG Y F+ +D+ +P VVAGFEPLD+LQ ++M +VENQ RVV GNL Sbjct: 1 MIGYRPYEFMPADYGKPCVVAGFEPLDILQAILMNHAPLAEGRCEVENQDSRVVSWEGNL 60 Query: 265 LAQQAIADVFC 275 A +++A+VF Sbjct: 61 SALRSMAEVFE 71 >UniRef50_UPI0001699500 Hydrogenase formation HypD protein n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699500 Length = 121 Score = 98.7 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 6/84 (7%) Query: 10 PEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGC 69 P Q +E +R + +RIM VCGGH +I + GL LP N+E I GPGC Sbjct: 14 PITAKQWLEQIRTL------PLPKRVRIMNVCGGHERSITQAGLRAALPRNIELIPGPGC 67 Query: 70 PVCVLPMGRIDTCVEIASHPEVIF 93 PVCV P + +++A + VI Sbjct: 68 PVCVCPEEDVYQAIQLALNESVIL 91 >UniRef50_Q9ZKV1 Putative n=2 Tax=Helicobacter pylori RepID=Q9ZKV1_HELPJ Length = 136 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 15/27 (55%), Positives = 17/27 (62%) Query: 332 KPHQCPLFGNTCNPQTAFGALMVSSEG 358 KP C LF TC PQ G+ MVSS+G Sbjct: 18 KPLDCSLFATTCTPQNPIGSCMVSSQG 44 Score = 60.1 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 15/27 (55%), Positives = 17/27 (62%) Query: 332 KPHQCPLFGNTCNPQTAFGALMVSSEG 358 KP C LF TC PQ G+ MVSS+G Sbjct: 63 KPLDCSLFATTCTPQNPIGSCMVSSQG 89 >UniRef50_UPI000190C3BE hydrogenase expression/formation protein HypD n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. 404ty RepID=UPI000190C3BE Length = 63 Score = 57.1 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 39/42 (92%), Positives = 40/42 (95%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCG 42 MRFVDEYRAPEQVMQLIEHLRERA+ L YTAERPLRIMEVCG Sbjct: 1 MRFVDEYRAPEQVMQLIEHLRERAALLPYTAERPLRIMEVCG 42 >UniRef50_Q111Q5 Hydrogenase formation HypD protein n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q111Q5_TRIEI Length = 62 Score = 49.7 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 180 PTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVML 239 PTL+++++ ID F+AP + + Y F+ + +PLVVA P+ +L+ +ML Sbjct: 2 PTLKAIMDSRILPIDGFIAPAQLIATFELEPYQFLVGYYCKPLVVAEVTPISMLKAKLML 61 Query: 240 V 240 + Sbjct: 62 L 62 >UniRef50_A9G700 Beta-glucosidase n=3 Tax=cellular organisms RepID=A9G700_SORC5 Length = 728 Score = 45.5 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%) Query: 52 GLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQ 111 G+ +L P E ++ GC V I VE+A + + GD + + G+ S Sbjct: 436 GIRELAPPGCEVVYAAGCSVLSEDESDIPAAVELARGADAVVLVLGDRIELIGETKSTAT 495 Query: 112 AKARGA 117 + G Sbjct: 496 LELMGG 501 >UniRef50_UPI0001AF6C89 hypothetical protein MkanA1_17326 n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF6C89 Length = 601 Score = 42.8 bits (100), Expect = 0.018, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 64/198 (32%), Gaps = 46/198 (23%) Query: 71 VCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALK 130 V VL R+D + + + V GD + V G SL +A + DV +V +P + Sbjct: 347 VVVLAAHRLDHEIHLPAKLNV-----GDTLLVEGSWDSL-EATSANPDVLLVDAPSEV-- 398 Query: 131 LAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPD 190 R+ V G G + AI + L P + +L Sbjct: 399 ------RRQTVKLGRG---SGRAIAIAVTMVA---------LMATALLTPAVAGILAAIM 440 Query: 191 NGIDAFLAP---------GHVSMVIGTDAYNFIASDFHRPLVVAG--------FEPLDLL 233 + +AP G V ++ G + V+AG P +L Sbjct: 441 VILTGVIAPEDAYRRVQWGTVFLIAGILPMSTAVEQSGLADVIAGTIVDAVGRLGPAAIL 500 Query: 234 QGVV---MLVQQKIAAHS 248 + ML+ Q + Sbjct: 501 AVIFVVGMLLTQVLTGIP 518 >UniRef50_C0AYY9 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0AYY9_9ENTR Length = 41 Score = 41.7 bits (97), Expect = 0.040, Method: Composition-based stats. Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 3/32 (9%) Query: 222 LVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQ 253 VV GFEPLDLLQ ++M+++Q +K EN Sbjct: 7 FVVTGFEPLDLLQAILMVIKQL---KAKAENA 35 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q9EYH5 HypD-like protein n=24 Tax=Bacteria RepID=Q9EYH5... 583 e-165 UniRef50_B8I6F4 Hydrogenase expression/formation protein HypD n=... 552 e-156 UniRef50_P31903 Hydrogenase expression/formation protein hypD n=... 549 e-155 UniRef50_Q2SQT0 Hydrogenase expression/formation protein HypD n=... 543 e-153 UniRef50_A5FPQ9 Hydrogenase expression/formation protein HypD n=... 541 e-152 UniRef50_B8FG27 Hydrogenase expression/formation protein HypD n=... 539 e-152 UniRef50_B8D1S3 Hydrogenase formation HypD protein n=1 Tax=Halot... 538 e-151 UniRef50_Q1LNV9 Hydrogenase expression/formation protein HypD n=... 538 e-151 UniRef50_C8WJD4 Hydrogenase expression/formation protein HypD n=... 532 e-149 UniRef50_Q31DZ2 Hydrogenase expression/formation protein hypD n=... 531 e-149 UniRef50_B8FQW4 Hydrogenase expression/formation protein HypD n=... 529 e-149 UniRef50_Q0RN44 Hydrogenase expression/formation protein n=74 Ta... 527 e-148 UniRef50_Q2RGH3 Hydrogenase expression/formation protein HypD n=... 523 e-147 UniRef50_B0TCN3 Hydrogenase expression/formation protein hypd n=... 522 e-147 UniRef50_A9Y8W2 Hydrogenase formation HypD protein n=3 Tax=Desul... 521 e-146 UniRef50_C1TK22 Hydrogenase expression/formation protein HypD n=... 518 e-146 UniRef50_C4KD97 Hydrogenase expression/formation protein HypD n=... 515 e-145 UniRef50_B5YB75 Hydrogenase expression/formation protein HypD n=... 515 e-144 UniRef50_B7B8S5 Putative uncharacterized protein n=1 Tax=Parabac... 514 e-144 UniRef50_B2TM77 Hydrogenase isoenzymes formation protein HypD n=... 514 e-144 UniRef50_D1BLR9 Hydrogenase formation HypD protein n=5 Tax=Veill... 513 e-144 UniRef50_Q5H7P6 Hydrogenase expression/formation protein HypD n=... 510 e-143 UniRef50_Q58400 Putative hydrogenase expression/formation protei... 509 e-143 UniRef50_C5RHD4 Hydrogenase formation HypD protein n=1 Tax=Clost... 507 e-142 UniRef50_C5A3E4 [NiFe] hydrogenase maturation protein (HypD) n=4... 506 e-142 UniRef50_Q3ABW4 Hydrogenase expression/formation protein HypD n=... 504 e-141 UniRef50_C6QQX3 Hydrogenase formation HypD protein n=2 Tax=Bacil... 503 e-141 UniRef50_A6LXR6 Hydrogenase formation HypD protein n=9 Tax=Clost... 500 e-140 UniRef50_Q1NML6 Hydrogenase formation HypD protein n=4 Tax=Prote... 500 e-140 UniRef50_C6PPY9 Hydrogenase formation HypD protein n=6 Tax=Clost... 499 e-140 UniRef50_D1Y5N2 Hydrogenase expression/formation protein HypD n=... 498 e-139 UniRef50_D1PPE6 Hydrogenase expression/formation protein HypD n=... 497 e-139 UniRef50_Q0W4N4 Hydrogenase expression/formation protein (Matura... 496 e-139 UniRef50_B5Y919 Hydrogenase expression/formation protein HypD n=... 493 e-138 UniRef50_A5ULS2 Hydrogenase expression/formation protein, HypD n... 489 e-137 UniRef50_Q46BF2 Hydrogenase expression/formation protein n=8 Tax... 489 e-137 UniRef50_C1SHT6 Hydrogenase maturation factor n=1 Tax=Denitrovib... 489 e-137 UniRef50_B2KBC4 Hydrogenase formation HypD protein n=1 Tax=Elusi... 483 e-135 UniRef50_B1L5X9 Hydrogenase maturation factor n=4 Tax=Archaea Re... 482 e-134 UniRef50_C9KK61 Hydrogenase expression/formation protein HypD n=... 480 e-134 UniRef50_O28901 Hydrogenase expression/formation protein (HypD) ... 478 e-133 UniRef50_A3DJT1 Hydrogenase formation HypD protein n=4 Tax=Clost... 478 e-133 UniRef50_A4YFA0 Hydrogenase formation HypD protein n=1 Tax=Metal... 470 e-131 UniRef50_A1SU74 Hydrogenase formation HypD protein n=1 Tax=Psych... 468 e-130 UniRef50_Q2Y8F6 Hydrogenase formation HypD protein n=8 Tax=Prote... 457 e-127 UniRef50_C5CEU3 Hydrogenase formation HypD protein n=1 Tax=Kosmo... 455 e-126 UniRef50_A7H7N4 Hydrogenase formation HypD protein n=5 Tax=cellu... 452 e-125 UniRef50_Q8NKV0 Membrane-bound NiFe hydrogenase n=1 Tax=Acidianu... 451 e-125 UniRef50_A1S0N0 Hydrogenase formation HypD protein n=6 Tax=Therm... 446 e-124 UniRef50_C9LR02 Hydrogenase expression/formation protein HypD n=... 446 e-124 UniRef50_Q6API1 Related to hydrogenase isoenzymes formation prot... 445 e-123 UniRef50_Q8TYR6 Hydrogenase maturation factor n=1 Tax=Methanopyr... 445 e-123 UniRef50_A4XJQ2 Hydrogenase formation HypD protein n=1 Tax=Caldi... 418 e-115 UniRef50_B4S326 Hydrogenase formation HypD protein n=1 Tax=Alter... 409 e-113 UniRef50_B9MR89 Hydrogenase formation HypD protein n=1 Tax=Anaer... 408 e-112 UniRef50_A0L606 Hydrogenase formation HypD protein n=1 Tax=Magne... 406 e-112 UniRef50_B9Y0D1 Putative uncharacterized protein n=1 Tax=Helicob... 259 2e-67 UniRef50_UPI00019137D4 hydrogenase expression/formation protein ... 178 3e-43 UniRef50_Q9REL6 Hydrogenase maturating protein HypD (Fragment) n... 163 1e-38 UniRef50_Q111Q4 Hydrogenase isoenzyme formation protein HypD n=1... 115 3e-24 UniRef50_UPI0001699500 Hydrogenase formation HypD protein n=1 Ta... 104 7e-21 UniRef50_Q1AUA4 Hydrogenase maturation factor-like protein n=1 T... 102 2e-20 UniRef50_Q111Q5 Hydrogenase formation HypD protein n=1 Tax=Trich... 78 7e-13 UniRef50_Q9ZKV1 Putative n=2 Tax=Helicobacter pylori RepID=Q9ZKV... 60 2e-07 UniRef50_UPI000190C3BE hydrogenase expression/formation protein ... 56 3e-06 Sequences not found previously or not previously below threshold: UniRef50_A9G700 Beta-glucosidase n=3 Tax=cellular organisms RepI... 46 0.003 UniRef50_UPI0001AF6C89 hypothetical protein MkanA1_17326 n=1 Tax... 44 0.006 CONVERGED! >UniRef50_Q9EYH5 HypD-like protein n=24 Tax=Bacteria RepID=Q9EYH5_NOSP7 Length = 392 Score = 583 bits (1503), Expect = e-165, Method: Composition-based stats. Identities = 194/373 (52%), Positives = 270/373 (72%), Gaps = 4/373 (1%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M++VDE+R PE+ E L + LS+ E+P++IMEVCGGHTH+IFK+G++++LP+ Sbjct: 1 MKYVDEFREPEKA----EALCREITKLSHQLEKPIKIMEVCGGHTHSIFKYGIEEILPQT 56 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 +E IHGPGCPVCV+P GR+D + I+ + VIF TFGDAMRVPG + SLLQA+A+GAD+R Sbjct: 57 IELIHGPGCPVCVMPKGRLDDAIAISQNHNVIFATFGDAMRVPGSKTSLLQARAQGADIR 116 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 +VYSP+D+L++A+++P R+VVFF LGFETT P+T T+ QA A ++ NF F H+ +IP Sbjct: 117 MVYSPLDSLQIAKDHPDREVVFFALGFETTAPSTGFTIVQAAAEEIHNFSMFSNHVLVIP 176 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 L++LL+ PD +D F+ PGHVSMVIG+D Y FI+ +++P+VV+GFEPLD+LQ + ML+ Sbjct: 177 ALKALLDNPDLQLDGFVGPGHVSMVIGSDPYQFISQQYNKPIVVSGFEPLDILQSIWMLL 236 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 QQ + +VENQY R+V +GN +A QAI VF V +WRGLG I SG+ + P+Y Sbjct: 237 QQIVENRCEVENQYNRIVQKSGNTVALQAINKVFAVRDSFDWRGLGDIPYSGLKIKPEYA 296 Query: 301 RFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGAC 360 +FDAE F +V D +CGE+L G KP +C +FG C P+T G MVSSEGAC Sbjct: 297 QFDAELKFTIPNLKVADHKACKCGEILKGVLKPWECKVFGTACTPETPIGTCMVSSEGAC 356 Query: 361 AAWYQYRQQESEA 373 AA+Y+Y + + A Sbjct: 357 AAYYKYGRLSTIA 369 >UniRef50_B8I6F4 Hydrogenase expression/formation protein HypD n=4 Tax=Clostridium RepID=B8I6F4_CLOCE Length = 361 Score = 552 bits (1424), Expect = e-156, Method: Composition-based stats. Identities = 154/367 (41%), Positives = 229/367 (62%), Gaps = 8/367 (2%) Query: 2 RFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENV 61 ++D++R E + ++++ L+ + L+IMEVCG HT AI ++GL LLP + Sbjct: 3 NYIDDFRDSEVISRIVQSLQGYS-------GPKLKIMEVCGTHTMAISRYGLRSLLPRQI 55 Query: 62 EFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRI 121 E + GPGCPVCV P ID+ E+A VI TFGD MRVPG +LL KA+G++V++ Sbjct: 56 ELVSGPGCPVCVTPTSYIDSATELADSKNVIITTFGDMMRVPGNNSTLLHKKAQGSNVQM 115 Query: 122 VYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPT 181 VYSP++A++LA+ NP ++VVF +GFETT P A+++ +AK+ ++N+ + T+ Sbjct: 116 VYSPLNAVELARNNPDKEVVFLSVGFETTTPVIALSVLKAKSEGIKNYSVLTANKTMPEA 175 Query: 182 LRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQ 241 +++L + + ID FL PGHVS +IGTD ++++A + + VVAGFEPLD+L + +LV Sbjct: 176 IKALADDKELQIDGFLYPGHVSAIIGTDFFSYVAYNMEKAGVVAGFEPLDILYSIKVLVD 235 Query: 242 QKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQR 301 EN Y R+V GN+ AQQ + +VF D WRG+G+I SG+ L DY++ Sbjct: 236 NIANGSIVFENMYSRIVAREGNIKAQQKMYEVFE-PVDVVWRGIGMIPRSGLGLVKDYEQ 294 Query: 302 FDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACA 361 FDA F + + + CGEVL GK +P C LF C P+T G+ MVSSEG CA Sbjct: 295 FDAAKKFDIKSKDIPEPKGCLCGEVLKGKKRPGDCKLFKKRCTPETPVGSCMVSSEGTCA 354 Query: 362 AWYQYRQ 368 A+Y+Y + Sbjct: 355 AYYKYGE 361 >UniRef50_P31903 Hydrogenase expression/formation protein hypD n=249 Tax=Bacteria RepID=HYPD_RALEH Length = 379 Score = 549 bits (1416), Expect = e-155, Method: Composition-based stats. Identities = 170/375 (45%), Positives = 236/375 (62%), Gaps = 12/375 (3%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M++++E+R E ++ H+R A + ME CGGHTHAI ++G+ +LLPEN Sbjct: 1 MKYIEEFRDGELAQRIAAHVRAEA-----RPGQRYNFMEFCGGHTHAISRYGVTELLPEN 55 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQG-SLLQAKARGADV 119 V IHGPGCPVCVLP+GRID + +A + I CT+GD MRVP G SL++AKA GAD+ Sbjct: 56 VRMIHGPGCPVCVLPIGRIDLALHLALERDAIVCTYGDTMRVPASGGMSLIRAKAHGADI 115 Query: 120 RIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLI 179 R+VYS DALK+AQ +P R+VVF +GFETT P TA+ +++AKAR V NF C H+ Sbjct: 116 RMVYSAADALKIAQRHPQREVVFLAIGFETTTPPTALIIREAKARQVDNFSVLCCHVLTP 175 Query: 180 PTLRSLLEQPDNG------IDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLL 233 + +LE P+ ID F+ P HVS+VIGT Y + ++ +P+V+AGFEPLD++ Sbjct: 176 SAITHILESPEVRDYGTVPIDGFVGPAHVSIVIGTRPYEHFSREYGKPVVIAGFEPLDVM 235 Query: 234 QGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGV 293 Q ++MLV+Q + ++VEN++ R V GN AQ +++VF + EWRGLG + S + Sbjct: 236 QAILMLVRQVNSGRAEVENEFVRAVTRDGNESAQAMVSEVFELRPSFEWRGLGEVPYSAL 295 Query: 294 HLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALM 353 + + RFDAE F + V D+ CG +L G KP C LF C P+ G+ M Sbjct: 296 RIRAQFARFDAEQRFDLRYRPVPDNKACECGAILRGVKKPTDCKLFATVCTPENPMGSCM 355 Query: 354 VSSEGACAAWYQYRQ 368 VSSEGACAA Y Y + Sbjct: 356 VSSEGACAAHYSYGR 370 >UniRef50_Q2SQT0 Hydrogenase expression/formation protein HypD n=6 Tax=Bacteria RepID=Q2SQT0_HAHCH Length = 370 Score = 543 bits (1399), Expect = e-153, Method: Composition-based stats. Identities = 164/374 (43%), Positives = 228/374 (60%), Gaps = 10/374 (2%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M+++DE+R + ++ + A ER R ME CGGHTH +F++G+ LLP N Sbjct: 1 MKYIDEFRNGDYAAEVARRIHAEAD-----PERRYRFMEFCGGHTHTLFRYGIPDLLPAN 55 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGK-QGSLLQAKARGADV 119 V+ IHGPGCPVCVLPM RID +E+A +V+ C++GD +RVPG + SL +AK++GADV Sbjct: 56 VKMIHGPGCPVCVLPMARIDAAIELAVRHQVVLCSYGDMLRVPGAHRTSLQKAKSQGADV 115 Query: 120 RIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLI 179 R++YSP DAL++A ENP R+VVFF +GFETT P TA L +A+ ++NF FC H+ Sbjct: 116 RMLYSPADALRIALENPQRQVVFFAIGFETTTPPTAAVLLKAQELKLRNFSVFCNHVLTP 175 Query: 180 PTLRSLLE----QPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQG 235 P + +LE + I+ + PGHVS++ G AY+ +A + P+V+AGFEPLD+L Sbjct: 176 PAITGILEPAQQAGERIIEGLVGPGHVSVITGGGAYDSLARRYRTPIVIAGFEPLDILHS 235 Query: 236 VVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHL 295 +++LV+Q A VENQY R V +GN AQ A + EWRGLG + S + + Sbjct: 236 ILLLVRQCNAGRYDVENQYSRAVTASGNAKAQSMAARTMTLRDSFEWRGLGWMPHSALRI 295 Query: 296 TPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVS 355 P++ +DAE F +P + ++ C VL G P C LF C P GA MVS Sbjct: 296 RPEFADYDAERRFELSPSEARENKACECPAVLRGAKAPTDCKLFATVCTPDNPIGACMVS 355 Query: 356 SEGACAAWYQYRQQ 369 SEGACAA Y Y Sbjct: 356 SEGACAAHYSYGHT 369 >UniRef50_A5FPQ9 Hydrogenase expression/formation protein HypD n=5 Tax=Dehalococcoides RepID=A5FPQ9_DEHSB Length = 364 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 150/370 (40%), Positives = 225/370 (60%), Gaps = 9/370 (2%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M F++E+R + L+E++ +R+ +P R ME CGGHT AIF++G+ QLLP + Sbjct: 1 MNFIEEFRNSQSGRTLLEYINKRS-------TKPARFMEFCGGHTVAIFRYGIRQLLPPH 53 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 +E + GPGCPVCV +D + ++ VI C+FGD +RVP + SLL+ +A GADVR Sbjct: 54 IEMLSGPGCPVCVTSTADLDKVIALSRLTGVIICSFGDLLRVPSSRQSLLEVRAEGADVR 113 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 IVYS MDAL++A++NP +KV+F G+GFETT PT A ++ QA+ + + N+Y H P Sbjct: 114 IVYSTMDALEIARQNPAKKVIFVGIGFETTAPTIAASVIQARNQGLDNYYVMSLHKITPP 173 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 +R++L+ + + + PGHVS + G++A+ FI D+H V+GFE LD+L V LV Sbjct: 174 VMRAILDAGETRLSGIICPGHVSSITGSNAWEFIPKDYHLACAVSGFESLDILYCVKSLV 233 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 Q +++ Y R V GNL A + + +VF + + WRG+G++ SG+ L P++ Sbjct: 234 DQVEDKTPRLDVSYSRAVKPEGNLAALKIMDEVFDI-CPANWRGIGILPESGLCLKPEFA 292 Query: 301 RFDAEAHFRPAP-QQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGA 359 FDAE +F + + P CGE++ G P +C LF C P+ G MVSSEG Sbjct: 293 AFDAEKNFEIKLSEPSRETPGCLCGEIIKGTRTPLECKLFSKVCTPENPVGPCMVSSEGT 352 Query: 360 CAAWYQYRQQ 369 CAA+Y Y + Sbjct: 353 CAAYYHYGGK 362 >UniRef50_B8FG27 Hydrogenase expression/formation protein HypD n=4 Tax=Deltaproteobacteria RepID=B8FG27_DESAA Length = 367 Score = 539 bits (1390), Expect = e-152, Method: Composition-based stats. Identities = 162/371 (43%), Positives = 220/371 (59%), Gaps = 11/371 (2%) Query: 1 MRF--VDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLP 58 M + +D +R PE L + E + + P+RIMEVCG HT +IF+ G+ +LP Sbjct: 1 MSYQNLDSFRDPEVAKTLSGLIAE-------SCQSPMRIMEVCGTHTVSIFRNGIRDMLP 53 Query: 59 ENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGAD 118 E++ + GPGCPVCV ID +++A VI TFGD MRVPG Q SL + +A+G Sbjct: 54 EDITLVSGPGCPVCVTDQKEIDDFIQLARKKNVILATFGDLMRVPGTQSSLQKQRAQGRK 113 Query: 119 VRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITL 178 V++VYS DAL LA +NP +K+VF G+GFETT PT + +A + ++NF+ + H T+ Sbjct: 114 VKVVYSAFDALTLAAQNPKKKIVFCGVGFETTAPTVGACILEADRQGLKNFFIYSAHKTV 173 Query: 179 IPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVM 238 P L +L+ D ID F+ PGHVS++IG DAY + F P +AGFEP D+L ++ Sbjct: 174 PPALDALMSM-DTVIDGFMMPGHVSVIIGADAYLPLVEKFSIPCAIAGFEPNDILASILT 232 Query: 239 LVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPD 298 LVQQK A SK+EN Y R V GN A++ + VF D+ WRGLGVI SG+ + + Sbjct: 233 LVQQKEAGESKLENTYSRAVSPIGNKKAREVMEQVFD-RVDASWRGLGVIPGSGLSIREE 291 Query: 299 YQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEG 358 Y+RFDA F P + CG +LTGK P QCP + C P G MVSSEG Sbjct: 292 YERFDASKAFELPPARSAAPKGCICGAILTGKKIPPQCPKYKIECTPTDPLGPCMVSSEG 351 Query: 359 ACAAWYQYRQQ 369 CAA+Y+Y Sbjct: 352 TCAAYYRYHGA 362 >UniRef50_B8D1S3 Hydrogenase formation HypD protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1S3_HALOH Length = 365 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 145/369 (39%), Positives = 207/369 (56%), Gaps = 7/369 (1%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M+ VDE + + ++ ++ ++IMEVCG HT +IFK G+ LLP++ Sbjct: 1 MKCVDELSDRKIISGIVSKIKAI------KLSGKVKIMEVCGTHTMSIFKNGIKSLLPDS 54 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 +E I GPGCPVCV P ID + +A VI TF D +RVPG G+L + + ++ Sbjct: 55 IELISGPGCPVCVTPDIYIDKALALAKKENVIITTFADLLRVPGSSGTLQEMRVNRKNIT 114 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 VYSP++A+K+A NP ++V+F +GFETT+P A+++ +A + NF + P Sbjct: 115 TVYSPLEAVKIAYNNPGQEVIFLAIGFETTIPAIALSIIKANQLGLNNFSILQSLKIMPP 174 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 L+ L+ D +D F+ PGHVS + G + F+A D+H P VVAGFEP D++ + L Sbjct: 175 VLQELVLDKDLDVDGFILPGHVSTISGLQPFEFLARDYHVPGVVAGFEPGDIILSIYTLC 234 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 + +V+N Y R+V GN AQ+ I ++F DS WRGLG I SG+ L Y Sbjct: 235 KMLKDNDIRVKNLYPRLVRLEGNKKAQELIKEIFT-PVDSYWRGLGTITGSGLKLRKVYH 293 Query: 301 RFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGAC 360 R+ AE F+ Q CGE+L GK KP C LFG C P G MVS EG C Sbjct: 294 RYSAEKKFQFGDTQYRPGKGCICGEILKGKQKPTDCRLFGIKCTPMKPEGPCMVSREGTC 353 Query: 361 AAWYQYRQQ 369 AA+Y+YR + Sbjct: 354 AAYYRYRGK 362 >UniRef50_Q1LNV9 Hydrogenase expression/formation protein HypD n=5 Tax=Bacteria RepID=Q1LNV9_RALME Length = 387 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 167/375 (44%), Positives = 232/375 (61%), Gaps = 12/375 (3%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M+F+DE+R E Q+ E + A ++R ME CGGHTHAI ++G+ +LLP N Sbjct: 1 MKFIDEFRDGELAKQIGERIHAEA-----RSDRAYSFMEFCGGHTHAISRYGVLELLPSN 55 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQG-SLLQAKARGADV 119 V +HGPGCPVCVLP+GRID + +A + I CT+GD MRVP SL++AKARG D+ Sbjct: 56 VRMVHGPGCPVCVLPIGRIDLAIRLALERDAIVCTYGDTMRVPASDSLSLMKAKARGGDI 115 Query: 120 RIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLI 179 R+VYS DAL +A+ NP R+VVFF +GFETT P TA+ ++ A+ + NF C H+ Sbjct: 116 RMVYSAADALAIARANPQREVVFFAIGFETTTPPTALAIRDAQREGLSNFSVLCCHVLTP 175 Query: 180 PTLRSLLEQPDNG------IDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLL 233 + +LE P+ ID F+ P HVS+VIG+ Y A ++ +P+V+AGFEPLD++ Sbjct: 176 SAITHILESPEVRQFGTVPIDGFVGPAHVSIVIGSQPYEHFAEEYRKPVVIAGFEPLDVM 235 Query: 234 QGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGV 293 Q ++MLV+Q + VEN++ R V GNL AQ +++VF + EWRGLG + S + Sbjct: 236 QAILMLVRQVNRGAAHVENEFTRAVTPEGNLRAQALVSEVFELRPSFEWRGLGEVPYSAL 295 Query: 294 HLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALM 353 + + FDAE F A Q V D+ CG +L G +P C +FG C P+ G+ M Sbjct: 296 KIREAFAAFDAERRFDLAYQSVPDNKACECGAILRGVKRPTDCKIFGTVCTPENPVGSCM 355 Query: 354 VSSEGACAAWYQYRQ 368 VSSEGACAA Y Y + Sbjct: 356 VSSEGACAAHYTYGR 370 >UniRef50_C8WJD4 Hydrogenase expression/formation protein HypD n=29 Tax=Bacteria RepID=C8WJD4_EGGLE Length = 393 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 150/363 (41%), Positives = 213/363 (58%), Gaps = 7/363 (1%) Query: 4 VDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEF 63 + ++ P+ LIE + + + T +MEVCG HT AI + G+ L+PE Sbjct: 37 LAAFKDPKLARGLIESIAKLSPAGGAT------LMEVCGTHTVAIARNGIRNLMPEGTRL 90 Query: 64 IHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVY 123 GPGCPVCV IDT + +A P + TFGD RVPG SLL +A G V+IVY Sbjct: 91 ASGPGCPVCVTSNRDIDTVIALARVPGITIATFGDMTRVPGSTSSLLAEQAAGRSVQIVY 150 Query: 124 SPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLR 183 SP+DAL LAQ+NP R++VF G+GFETT P A+ +++A A ++NF F H + L Sbjct: 151 SPLDALTLAQQNPDREIVFVGVGFETTTPLVAMAIKRAAAAGLKNFSVFGAHKNMPGALE 210 Query: 184 SLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQK 243 +++ P +DA + PGHVS +IG + Y F+A + P V+ GFEP+D+LQG+ M+++Q Sbjct: 211 AIINDPQLKVDALILPGHVSTIIGAEPYRFLAEKYGIPGVITGFEPVDVLQGIAMIMRQL 270 Query: 244 IAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFD 303 + +E Y R V GN +A AI +VF + WRGLG I SG + ++ +FD Sbjct: 271 HEGRADIEIAYARGVMPEGNPVALAAIDEVFET-CTALWRGLGEIPGSGYRIREEFAQFD 329 Query: 304 AEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAW 363 A F+P + D RCG+VL G P++CPLF C P+ G MVSSEG+CAA+ Sbjct: 330 AVRRFQPDVEPTQDPKGCRCGDVLRGIMAPNECPLFRKVCTPENPVGPCMVSSEGSCAAY 389 Query: 364 YQY 366 ++Y Sbjct: 390 HRY 392 >UniRef50_Q31DZ2 Hydrogenase expression/formation protein hypD n=79 Tax=Bacteria RepID=Q31DZ2_THICR Length = 388 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 159/364 (43%), Positives = 224/364 (61%), Gaps = 6/364 (1%) Query: 7 YRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHG 66 +R P+ + L + + + A L PLRIMEVCGGHTH I K+GL+Q LPEN+EFIHG Sbjct: 13 FRQPKTIQALAQKIHQTAQTL----SSPLRIMEVCGGHTHTIMKYGLNQQLPENIEFIHG 68 Query: 67 PGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPM 126 PGCPVC++P RID + +A P I T GD +RVPG + SL + +A G+D+R +YSP+ Sbjct: 69 PGCPVCIMPKERIDHAIALAQMPNTILLTLGDMIRVPGSKTSLAKQRALGSDIRALYSPL 128 Query: 127 DALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLL 186 DAL +AQENP ++VVFF +GFETT P T +QQA + N +F H+ + P + ++L Sbjct: 129 DALTIAQENPDKQVVFFAIGFETTTPMTTAVIQQALVLKLPNLFFHINHVLVPPAVAAIL 188 Query: 187 EQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAA 246 D I+A + P HVS++ G Y +A+ P+VV+GFEP+D++Q ++M+V+Q + Sbjct: 189 SDKDCQINALIGPSHVSVISGAQIYQPLAAQHRIPIVVSGFEPVDVMQSILMIVEQMLQK 248 Query: 247 HSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEA 306 +VE QY R V + GN AQQ I WRGLG I S + L Y+ DAE Sbjct: 249 RHQVEIQYSRAVTEQGNQKAQQMIETYLEPRSHFRWRGLGDIPLSALQLKDAYRFLDAET 308 Query: 307 HFR--PAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWY 364 F+ + + + D CG++L G KP C +FG C+P G+ MVSSEGAC A+Y Sbjct: 309 VFKSVLSDEPIDDHKLCICGDILKGVAKPQDCKVFGRGCDPARPLGSCMVSSEGACNAYY 368 Query: 365 QYRQ 368 +Y + Sbjct: 369 RYAE 372 >UniRef50_B8FQW4 Hydrogenase expression/formation protein HypD n=7 Tax=Bacteria RepID=B8FQW4_DESHD Length = 367 Score = 529 bits (1364), Expect = e-149, Method: Composition-based stats. Identities = 155/369 (42%), Positives = 225/369 (60%), Gaps = 4/369 (1%) Query: 4 VDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEF 63 V+ Y + + V ++ + L+ P +MEVCG HT AI K L LLP + Sbjct: 3 VNNYNSKQSVKEVAAGYLKEIRELAAA---PYTVMEVCGTHTVAIAKNALRDLLPAQIRL 59 Query: 64 IHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVY 123 + GPGCPVCV ID + +A+ P VI TFGD +RVPG Q SL + GAD+RIVY Sbjct: 60 VSGPGCPVCVTDSSDIDQFLYLAAQPHVITATFGDMIRVPGSQKSLQMLRGEGADIRIVY 119 Query: 124 SPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLR 183 S +DAL LA++NP ++VVF G+GFETT+PT ++++QA+ D++N+ H + P LR Sbjct: 120 STLDALDLARKNPDKEVVFLGVGFETTVPTVCVSIEQAQKEDIRNYSILSMHKLVPPVLR 179 Query: 184 SLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQK 243 +L E P+ +D FL PGH +IG++A F+A D+ P VV GFE LD+L+G+VML++Q+ Sbjct: 180 ALAEDPETEVDGFLDPGHACAIIGSEALAFMAEDYAMPGVVTGFEALDILEGLVMLLRQR 239 Query: 244 IAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFD 303 +++E QY ++V GN +AQ I +F D+ +RGLG+I G+ + +Y+ +D Sbjct: 240 DQGRAEIEIQYDKIVKPEGNRVAQALIHKIFE-PVDAAFRGLGIIPLGGLGVRKEYEDWD 298 Query: 304 AEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAW 363 A F + + P RCG VL G+ P +CPLF C P + G MVSSEG+CAA+ Sbjct: 299 AAKKFALPEFETVEIPGCRCGNVLKGQITPPECPLFARKCTPLSPVGPCMVSSEGSCAAY 358 Query: 364 YQYRQQESE 372 Y+Y Q+ Sbjct: 359 YRYAQRSGI 367 >UniRef50_Q0RN44 Hydrogenase expression/formation protein n=74 Tax=Bacteria RepID=Q0RN44_FRAAA Length = 407 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 176/368 (47%), Positives = 231/368 (62%), Gaps = 8/368 (2%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M++++E+ P +L++ + RP IMEVCGG TH++ + G+DQLLP Sbjct: 1 MKYLEEFSDPALAGRLLDQIHA-------VTTRPWAIMEVCGGQTHSLIRHGIDQLLPAG 53 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 VE IHGPGCPVCV P+ ID +EIAS P VIFC+FGD +RVPG L + K+ GADVR Sbjct: 54 VEMIHGPGCPVCVTPLEIIDRALEIASRPGVIFCSFGDMLRVPGSGRDLFRVKSTGADVR 113 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 +VYSP+DAL +A+ NP R+VVFFG+GFETT P A+T+ QAK V+NF H+ + P Sbjct: 114 VVYSPLDALTIARRNPDRQVVFFGIGFETTAPANAMTVYQAKRCGVRNFSLLVSHVLVPP 173 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 + +++E P + FLA GHV V+GT Y +A + P+VV GFEPLDLL+G+ V Sbjct: 174 AMAAIMESPSCRVQGFLAAGHVCSVMGTGQYPELARRYQVPIVVTGFEPLDLLEGIRRTV 233 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 Q +++N Y R VP AGN A + DVF V D WRG+GVI SG L+ Y Sbjct: 234 TQLEEGRHELDNAYPRAVPAAGNPAAIAMLRDVFTV-TDRAWRGIGVIPDSGWRLSAAYA 292 Query: 301 RFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGAC 360 +FDAE F + R GEVL G KPH+C FG+ C P+T GA MVS+EGAC Sbjct: 293 QFDAETRFAVRDIHTEESSVCRSGEVLQGLIKPHECAAFGHRCTPRTPLGATMVSAEGAC 352 Query: 361 AAWYQYRQ 368 AA+Y YR+ Sbjct: 353 AAYYLYRR 360 >UniRef50_Q2RGH3 Hydrogenase expression/formation protein HypD n=7 Tax=Bacteria RepID=Q2RGH3_MOOTA Length = 377 Score = 523 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 158/375 (42%), Positives = 217/375 (57%), Gaps = 3/375 (0%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M +D + E +L+ + A ++ RP +EVCG HT AI + GL LL Sbjct: 1 MSPLDRFCDTELSRKLMGRVAALADEVAERLGRPAVFIEVCGTHTVAISRLGLRSLLAGR 60 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 VE GPGCPVCV ID V++A P V TFGD +RVPG + SL + +A GADVR Sbjct: 61 VELRSGPGCPVCVTDHQEIDMMVDLARLPGVTLGTFGDMLRVPGSRSSLERERAGGADVR 120 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 I YSP+DA+ A+ NP R+VVF G+GFETT P A +L +A+A+ V+NF F H + P Sbjct: 121 IFYSPLDAVAFAEANPEREVVFLGIGFETTAPAVAASLARARAKGVKNFSLFSAHKLIPP 180 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 LR++L P+ +D + PGHVS V G A++FI ++ P V++GF+P+D+L + L+ Sbjct: 181 ALRAVLSDPELKLDGLILPGHVSAVTGRRAFDFIVKEYGLPSVISGFDPMDILIALHELL 240 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 Q + ++V N+Y RVV + GNL A++ IA+ F D WRGLGVI SG+ L ++ Sbjct: 241 LQLLRGEARVANKYTRVVREEGNLDARKRIAECFEEV-DVPWRGLGVIPESGLSLRETFR 299 Query: 301 RFDAEAHFRPA--PQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEG 358 FDA P P C E+L GK P +C LF N C P G MVSSEG Sbjct: 300 DFDARFKLNIEPAPPTPLYPPGCACKEILRGKLLPPECRLFSNVCTPVHPVGPCMVSSEG 359 Query: 359 ACAAWYQYRQQESEA 373 ACAA+Y++ + Sbjct: 360 ACAAYYRFERFSPVG 374 >UniRef50_B0TCN3 Hydrogenase expression/formation protein hypd n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TCN3_HELMI Length = 372 Score = 522 bits (1345), Expect = e-147, Method: Composition-based stats. Identities = 151/367 (41%), Positives = 208/367 (56%), Gaps = 1/367 (0%) Query: 2 RFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENV 61 + +R PE Q+ E +RER L+ R + +ME CG HT AI + G+ +LL +V Sbjct: 4 EILKRFRDPELGRQMAEQVRERLDRLTDRLGRRVNVMEFCGTHTAAISRTGIRELLKPHV 63 Query: 62 EFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRI 121 + GPGCPVCV ID + +A I TFGD M+VPG + +LL+ KARGADVR+ Sbjct: 64 HLMSGPGCPVCVSDYVDIDRVIALAGMSGAIIATFGDMMKVPGSRTTLLEEKARGADVRV 123 Query: 122 VYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPT 181 V+S +DAL +A+EN R V+F G+GFETT PT A+T++QA NF+ + H P Sbjct: 124 VFSSLDALAIARENADRAVIFVGVGFETTAPTAAVTVEQAVQEGRDNFFLYSLHKITPPA 183 Query: 182 LRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQ 241 + +LL D +D L PGHVS++ G ++F++ D P VVAGFE L+LL V L Sbjct: 184 MMALLPDRDLQVDGILLPGHVSLITGRGYWDFLSRDLALPGVVAGFELLELLSAVDALAS 243 Query: 242 QKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQR 301 + V N Y R V + GNL A A+A F + + WRGLG++ +S + L P+ Sbjct: 244 SLLEERCAVINAYGRAVREEGNLSALDALARCFDLQ-EGHWRGLGIVPASALKLKPELAP 302 Query: 302 FDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACA 361 +DAE F + CGE+L GK P CPLF + C P G MVS EG CA Sbjct: 303 WDAEVRFPLENRPAAPPKGCLCGEILKGKKTPFDCPLFASRCEPARPVGPCMVSHEGTCA 362 Query: 362 AWYQYRQ 368 +Y+Y + Sbjct: 363 TYYRYER 369 >UniRef50_A9Y8W2 Hydrogenase formation HypD protein n=3 Tax=Desulfovibrionaceae RepID=A9Y8W2_DESVM Length = 365 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 160/371 (43%), Positives = 222/371 (59%), Gaps = 9/371 (2%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 + F ++ P+ LIE L +RPLR MEVCG HT AIF+ G+ LLP Sbjct: 3 VNFSTAFKDPDLSRGLIERLHR-------ALDRPLRFMEVCGTHTVAIFQSGMRPLLPAG 55 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQG-SLLQAKARGADV 119 V + GPGCPVCV + +++A P VI TFGD MRVPG G +L A+A+GA V Sbjct: 56 VRHLSGPGCPVCVTHESEVAAYLQLAEKPGVIIATFGDLMRVPGPGGDNLKLAQAKGARV 115 Query: 120 RIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLI 179 IVYS DALKLA +NP VVF G+GFETT PT A T+ A+ + + NF H + Sbjct: 116 EIVYSAHDALKLAADNPGDTVVFLGIGFETTAPTVAATVLMARQQGLANFCVLSFHKLVP 175 Query: 180 PTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVML 239 P LR+LL PD +DAFL PGHVS ++G + Y F+A +F P ++AGF+P+D+LQ ++++ Sbjct: 176 PALRALLADPDCAVDAFLLPGHVSTILGMEPYRFVADEFRTPGIIAGFDPVDILQALLIM 235 Query: 240 VQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDY 299 V+Q+ + N YRR V DAGN A++ + VF D+ WRG+G I SG+ P++ Sbjct: 236 VEQRKTGEFAIVNSYRRAVDDAGNPRAREILDTVFQT-ADALWRGIGCIPGSGLVFRPEF 294 Query: 300 QRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGA 359 +++DA A + +CG+VL GK +P CPLF C P G MVS+EG+ Sbjct: 295 EQYDAMARLGLTLPEARPIAGCKCGDVLKGKMQPCDCPLFAKACTPAKPVGPCMVSTEGS 354 Query: 360 CAAWYQYRQQE 370 CAA+++Y + Sbjct: 355 CAAYFKYNVEA 365 >UniRef50_C1TK22 Hydrogenase expression/formation protein HypD n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TK22_9BACT Length = 361 Score = 518 bits (1336), Expect = e-146, Method: Composition-based stats. Identities = 138/352 (39%), Positives = 207/352 (58%), Gaps = 1/352 (0%) Query: 18 EHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMG 77 + +S L +RP IMEVCG HT +IF+ GL L PE+++ I GPGCPVCV G Sbjct: 4 NRAKLLSSALKKLTKRPTTIMEVCGTHTVSIFRQGLRSLFPEDLKLISGPGCPVCVTSQG 63 Query: 78 RIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPT 137 ID +E+A+ V+ T+GD MRVPG G+L + + G+DVR+V S M+ L++A+E P Sbjct: 64 EIDGAIELATRKNVVMATYGDMMRVPGSNGTLGELRGTGSDVRVVLSAMETLRMAEEMPH 123 Query: 138 RKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFL 197 +++VF +GFETT P TA L +A+ R ++N C H + P L L + N +D FL Sbjct: 124 KEIVFLAVGFETTAPATAALLIEARKRKLENLSVLCLHKRVPPALEVLSKADGNRVDGFL 183 Query: 198 APGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRV 257 PGHV++++G + + FI VAGFE +++ +V L++Q + ++Y + Sbjct: 184 LPGHVAVILGHEPFKFIPEKHGIACTVAGFEADEIMLALVDLLEQICENRPSLTSRYEKA 243 Query: 258 VPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCD 317 V GN+ A + VF + + WRG+G I+ SG+ + +Y +D F A + V + Sbjct: 244 VRPEGNVKAVDLMDRVFDTSTSA-WRGIGPIDESGMSIKEEYSLWDGSRKFDVAVRNVPE 302 Query: 318 DPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQ 369 RCG++L+G P +CPLFG C P T G MVSSEG C+AWY+Y ++ Sbjct: 303 PNGCRCGDILSGTITPKECPLFGTGCTPVTPVGPCMVSSEGTCSAWYRYGRK 354 >UniRef50_C4KD97 Hydrogenase expression/formation protein HypD n=2 Tax=Betaproteobacteria RepID=C4KD97_THASP Length = 393 Score = 515 bits (1327), Expect = e-145, Method: Composition-based stats. Identities = 171/376 (45%), Positives = 229/376 (60%), Gaps = 13/376 (3%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M++VDE+R L L R ME CGGHTHAI ++G+ LLP N Sbjct: 1 MKYVDEFRDGALAAGLARALAREVD-----PGRDYAFMEFCGGHTHAISRYGVADLLPPN 55 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIAS-HPEVIFCTFGDAMRVPGKQG-SLLQAKARGAD 118 V IHGPGCPVCVLP+GR+D + +A PEVI C++GD +RVP G SLL+AKARGAD Sbjct: 56 VRMIHGPGCPVCVLPIGRVDMAIGLALARPEVILCSYGDCLRVPASDGLSLLKAKARGAD 115 Query: 119 VRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITL 178 VR+VYS DAL LA P R+VVFF +GFETT P TA+ L++A R + NF C H+ Sbjct: 116 VRMVYSAADALALAVREPAREVVFFAIGFETTTPPTALVLREAATRRLANFSVICNHVLT 175 Query: 179 IPTLRSLLEQPD------NGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDL 232 P + ++L+ P +D F+ P HVS +IG+ Y A+ + +P+V+AGFEPLD+ Sbjct: 176 PPAITAILDSPAASRLGALHLDGFIGPAHVSTLIGSRPYEAFAARYRKPVVIAGFEPLDV 235 Query: 233 LQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSG 292 +Q + MLV+Q ++VEN++ R V GN AQ +++V + + EWRGLGV+ S Sbjct: 236 MQAIRMLVRQVDTGRAEVENEFTRAVVRDGNPKAQAIVSEVLALRDEFEWRGLGVLARSA 295 Query: 293 VHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGAL 352 + + P + +DAEA F + V D CG +L G KP C LFG C P+T G+ Sbjct: 296 LRIRPAFAPWDAEAKFGLDYRPVPDHRACECGAILRGVKKPTDCKLFGTVCTPETPMGSC 355 Query: 353 MVSSEGACAAWYQYRQ 368 MVSSEGACAA Y Y + Sbjct: 356 MVSSEGACAAHYNYGR 371 >UniRef50_B5YB75 Hydrogenase expression/formation protein HypD n=2 Tax=Dictyoglomus RepID=B5YB75_DICT6 Length = 352 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 134/351 (38%), Positives = 204/351 (58%), Gaps = 2/351 (0%) Query: 19 HLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGR 78 L++ + + + + IME CG HTH IF++G+ ++LP N+ + GPGCPVCV Sbjct: 2 ELKDLLEKIRTISTKEINIMEFCGTHTHEIFRYGIREILPPNIHLLSGPGCPVCVTAEED 61 Query: 79 IDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTR 138 ID + ++ + TFGD + VPG GSL +ARG +VR+VYSP+++L +A+ENP + Sbjct: 62 IDYIIALSQEYNLGIITFGDLVNVPGSLGSLNYLRARGKEVRVVYSPLESLNIAKENPHK 121 Query: 139 KVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLA 198 K + G+GFETT P A TL +A +++N YF H P ++++L+ + +D + Sbjct: 122 KYLLVGIGFETTAPNLAYTLIKATEENIKNLYFLSLHKLTPPAMKAILDMGEIKLDGIIG 181 Query: 199 PGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVV 258 PGHVS +IG + I + P V+ GF+P +++ G+ LV+ K+ N Y R V Sbjct: 182 PGHVSTIIGRVGWKEIFEKYRVPFVIMGFKPEEIVYGIYHLVKIIEEGEPKLLNAYERSV 241 Query: 259 PDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDD 318 + GN A + + VF G + WRGLG+IE SG+ L +++ FD + ++ D+ Sbjct: 242 KEEGNKHALEVMYKVFK-KGPANWRGLGIIEESGLVLREEFEDFDVRRIYPLKIEKRVDN 300 Query: 319 -PRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQ 368 +CGEVL G KP +CPLFG C P+ G MVSSEG C+A+Y Y Sbjct: 301 YNPCKCGEVLRGVLKPTECPLFGKACTPEYPKGPCMVSSEGTCSAYYLYGG 351 >UniRef50_B7B8S5 Putative uncharacterized protein n=1 Tax=Parabacteroides johnsonii DSM 18315 RepID=B7B8S5_9PORP Length = 370 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 168/378 (44%), Positives = 230/378 (60%), Gaps = 19/378 (5%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 MRFVDEYR EQV L+ +R RP IME+CGG TH I ++ L+++LPE Sbjct: 1 MRFVDEYRDKEQVRSLVRAIR-------QVVTRPWHIMEICGGQTHTIARYRLEEMLPEE 53 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 V+ +HGPGCPVCV P+G ID +E+A P+VI +FGD MRVPG + LLQ KARGAD+R Sbjct: 54 VKLLHGPGCPVCVTPVGIIDRALELAKRPDVILASFGDMMRVPGSREDLLQIKARGADIR 113 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 I+YSP+DA+ LA ++P +K+VFF +GFETT P + L++A R ++NFY T+ P Sbjct: 114 ILYSPLDAVSLAADHPDKKIVFFAIGFETTAPVHMMALKEAARRKLENFYLHTSLFTVPP 173 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 + ++L P++ +D FLA GHV + G AY +A + P+VV GFEP DLL G+ + Sbjct: 174 AIEAILSDPESRVDGFLAAGHVCAITGNGAYRHLAEKYKTPIVVTGFEPADLLLGIYCCL 233 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 Q A KVEN Y+RVVP+ GNL A+ + + + D EWRGLG I SG+ L + Sbjct: 234 LQLEAGIYKVENVYKRVVPEEGNLPARALMEETLEL-CDQEWRGLGTIPQSGLRLKEIFA 292 Query: 301 R---------FDAEAHFRPAPQQVC--DDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAF 349 R DA+AH + + + G+++ G + CP FG C P Sbjct: 293 RQDASHLLPALDAKAHKQCLEATSSGVEKGQCIAGDIMRGTKQTKDCPFFGTLCTPDHPV 352 Query: 350 GALMVSSEGACAAWYQYR 367 GA MVSSEG CAA+Y+Y+ Sbjct: 353 GAPMVSSEGVCAAYYRYK 370 >UniRef50_B2TM77 Hydrogenase isoenzymes formation protein HypD n=2 Tax=Clostridium botulinum RepID=B2TM77_CLOBB Length = 361 Score = 514 bits (1324), Expect = e-144, Method: Composition-based stats. Identities = 131/364 (35%), Positives = 213/364 (58%), Gaps = 8/364 (2%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M ++ + L++ + + A + IMEVCG HT +I++ G+++LLPEN Sbjct: 1 MELINRFNDVSLCKTLLKEIEKNAME-------KINIMEVCGTHTRSIYELGINKLLPEN 53 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 + + GPGCP+CV P+ ID ++++ P+ I TFGD MRVPG SL + KA+G D+R Sbjct: 54 INLLSGPGCPICVTPVNYIDNAIKLSKKPQTIIVTFGDMMRVPGSSSSLSEEKAKGMDIR 113 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 I+YSP+D++K+A++N ++V+ G+GFETT P A+TL+ AKA+ + NF T+ Sbjct: 114 IIYSPLDSIKIAEKNKDKEVILLGIGFETTAPIIALTLKYAKAKKINNFSVLLSIKTMPN 173 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 T++ L+ I+ F+ PGHV+ +IG + +N ++ + P+ + GF+ ++L G++ +V Sbjct: 174 TMKELVLDGRAKINGFICPGHVATIIGEEPFNILSMESKLPMSICGFKGTEILVGILSIV 233 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 + K EN YR V GN+ A++ I +VF ++ DS WRG+G I+ +G +Y+ Sbjct: 234 KLVNNNEYKCENLYRGFVKKKGNIKAKELINEVFEIS-DSVWRGMGTIKQTGFDFKNEYK 292 Query: 301 RFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGAC 360 FD+ F +++ + CGE+L G P C FG C P+ G MVS+EG C Sbjct: 293 IFDSTKKFLLRHRELNLNNNCICGEILQGISNPRDCLSFGKCCTPENPIGPCMVSNEGTC 352 Query: 361 AAWY 364 Y Sbjct: 353 KIVY 356 >UniRef50_D1BLR9 Hydrogenase formation HypD protein n=5 Tax=Veillonellaceae RepID=D1BLR9_VEIPT Length = 372 Score = 513 bits (1321), Expect = e-144, Method: Composition-based stats. Identities = 136/359 (37%), Positives = 209/359 (58%), Gaps = 3/359 (0%) Query: 14 MQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCV 73 + L R + L +R+MEVCG HT +IF+ GL QLLP +E + GPGCPVCV Sbjct: 10 QHTADALLRRINALHK-PGETVRLMEVCGTHTVSIFREGLRQLLPCGIELVSGPGCPVCV 68 Query: 74 LPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQ 133 +D + A +VI TFGD ++VPG SL +A+ +GA + ++Y+P++ ++L++ Sbjct: 69 TDQTYMDKALAYAECEDVIIATFGDMLKVPGSYSSLNEAQTKGAHIHVIYTPLEVIELSK 128 Query: 134 ENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGI 193 + P +K+VF +GFETT+ T++ A ++N +F H + P LR+LL++ + I Sbjct: 129 KYPEKKIVFLAIGFETTIAIICATVKAVHAAGLKNVFFLVSHKLVPPALRALLDKQEGHI 188 Query: 194 DAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQ 253 D F+ PGHVS++IG + Y F+ ++ P +AGF+ L++L + +++Q+ + + V N Sbjct: 189 DGFILPGHVSVIIGEEPYQFLPKEYGIPSCIAGFDGLEILSAIANILEQRKSGNIVVGNT 248 Query: 254 YRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPA-P 312 Y VV GN +AQ I +V+ V D WRG+GVI +SG+ L +Y +D E Sbjct: 249 YHSVVMQKGNPVAQAMIEEVYEV-CDDVWRGIGVIPNSGLALKGEYAAYDVELVLPINLD 307 Query: 313 QQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQES 371 + D +CG VL G KP +C LFG +C GA MVS EG+CAAWY+Y Sbjct: 308 KPSLDPKGCQCGRVLQGLIKPSECLLFGKSCTADHPVGACMVSVEGSCAAWYKYGYSSG 366 >UniRef50_Q5H7P6 Hydrogenase expression/formation protein HypD n=11 Tax=Euryarchaeota RepID=Q5H7P6_PYRKO Length = 372 Score = 510 bits (1313), Expect = e-143, Method: Composition-based stats. Identities = 140/370 (37%), Positives = 200/370 (54%), Gaps = 13/370 (3%) Query: 5 DEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFI 64 + YR+ E M+L+E +RE A L + +RIM VCG H + + G+ LLPENV+ + Sbjct: 6 EAYRSREVAMKLVEKIREEAKTL----DGEIRIMHVCGTHEDTVTRHGIRSLLPENVKVV 61 Query: 65 HGPGCPVCVLPMGRIDTCVEIASH-----PEVIFCTFGDAMRVPGKQGSLLQAKARGADV 119 GPGCPVC+ P+ I I E+I TFGD ++P GS K+ G DV Sbjct: 62 SGPGCPVCITPVEDIVAMQLIMRKAREEGEEIILTTFGDMYKIPTPMGSFADLKSEGFDV 121 Query: 120 RIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLI 179 RIVY D ++A+ENP + VV F GFETT A L A +++NF + H Sbjct: 122 RIVYGIFDTYRIAKENPDKTVVHFSPGFETTTAPAAGMLNVAAQEELENFKIYSVHRLTP 181 Query: 180 PTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVML 239 P + LL+Q +APGHVS +IG + ++ + P VVAGFEP D+L ++ML Sbjct: 182 PAVEVLLKQG-TVFQGLIAPGHVSTIIGVKGWEYLTEKYGIPQVVAGFEPNDVLMAILML 240 Query: 240 VQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDY 299 ++ +++ N+Y R V GN++AQ+ I F V D++WR LGV SG+ L ++ Sbjct: 241 IRMYKEGEARIINEYERAVKYEGNVVAQKMIDKFFEVV-DAKWRALGVFPKSGLELRKEW 299 Query: 300 QRFDAEAHFRPAPQQVCDD--PRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSE 357 + F+ + ++ + D RCG VL G P CPLFG TC P+ G MVS E Sbjct: 300 KDFEIRSFYKVEVPKNLPDLEKGCRCGAVLRGLALPTDCPLFGKTCTPRHPVGPCMVSYE 359 Query: 358 GACAAWYQYR 367 G C +Y+Y Sbjct: 360 GTCQIFYKYG 369 >UniRef50_Q58400 Putative hydrogenase expression/formation protein MJ0993 n=8 Tax=Euryarchaeota RepID=Y993_METJA Length = 358 Score = 509 bits (1311), Expect = e-143, Method: Composition-based stats. Identities = 142/361 (39%), Positives = 206/361 (57%), Gaps = 8/361 (2%) Query: 8 RAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGP 67 + + I+ + + A + L+IM VCG H H I K+G+ +LPEN+ + GP Sbjct: 5 NDRALIKKAIDKINKLAEKIDK-----LKIMHVCGSHEHTICKYGIRDVLPENITVVPGP 59 Query: 68 GCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMD 127 GCPVCV IDT + +A + VI T GD RVPG + SL++ ++ G DVRIVYS + Sbjct: 60 GCPVCVTTQKEIDTAIYLADNGYVI-TTLGDMYRVPGSEKSLMEKQSEGCDVRIVYSISE 118 Query: 128 ALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLE 187 A+K+A++ +K VF +GFETT PTT L K +DV NF+ H P + LL Sbjct: 119 AVKMAKKERDKKFVFVAIGFETTAPTTGAELISLKNKDVNNFFILNCHRQTPPVMEFLLN 178 Query: 188 QPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAH 247 + +DAF+ PGHVS + G Y + + P+VVAGFEP+D+L ++M+++Q I+ Sbjct: 179 EG-VYLDAFICPGHVSTITGLKPYYGLCEKYKAPMVVAGFEPIDVLMAIIMILKQVISGE 237 Query: 248 SKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAH 307 +KVEN+Y R V GN+LAQ+ I +VF + D WRG V+++ G L Y++FD H Sbjct: 238 AKVENEYIRAVKPEGNVLAQKIINEVFE-SIDVPWRGFPVVKNGGFGLREKYKKFDIYEH 296 Query: 308 FRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYR 367 + C ++L G+ P CPLFG C P G+ MVS EG C +Y+YR Sbjct: 297 EDIPEIKEKIPKGCICDKILRGEKLPTDCPLFGTVCTPLNPVGSCMVSDEGTCRIFYKYR 356 Query: 368 Q 368 + Sbjct: 357 R 357 >UniRef50_C5RHD4 Hydrogenase formation HypD protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5RHD4_CLOCL Length = 390 Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 139/385 (36%), Positives = 202/385 (52%), Gaps = 47/385 (12%) Query: 28 SYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIAS 87 S +R +RIME+CG HT I K G+ +LLP N++ I GPGCPVCV G ID + ++ Sbjct: 3 SLEIDREIRIMEICGTHTTTILKSGIRKLLPPNIKLISGPGCPVCVTSQGYIDAAINLSE 62 Query: 88 HPEVIFCTFGDAMRVPGK------------------------------------------ 105 +I TFGD + VPG Sbjct: 63 KENLIITTFGDMLNVPGSIPFEDKDGLLNNENSDNPSNIRNIIQDQYGDKGNTFIFKDIN 122 Query: 106 ----QGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQA 161 SL+ +A+G DVR++YSP++AL +A++NP ++VVF +GFETT PT A+T++QA Sbjct: 123 FNTKANSLMNQRAKGKDVRVIYSPLEALNIAKKNPNKEVVFLAIGFETTAPTIALTIEQA 182 Query: 162 KARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRP 221 +++NF F T+ ++ L+ + +D + PGHVS +IG +A+ F++ + H P Sbjct: 183 YQENIRNFSAFTSLKTMPEAIKGLISDKEINVDGVICPGHVSTIIGENAFKFMSEELHMP 242 Query: 222 LVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSE 281 V+AGFE D+L V +LV +++N Y VV GN A++ I V V DS Sbjct: 243 SVIAGFEDRDVLIAVCLLVDMIRENKHELKNIYGSVVKLEGNKKAKELINKVLNVV-DSN 301 Query: 282 WRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGN 341 WRGLG I++SG+ ++ Y+ FDA F Q+ CG +L G+ P C LFG Sbjct: 302 WRGLGEIKNSGLAISDKYKAFDAVIKFNIKVQEALSASGCICGSILKGQKTPEDCKLFGK 361 Query: 342 TCNPQTAFGALMVSSEGACAAWYQY 366 C P + G MVS EG C Y+Y Sbjct: 362 KCTPYSPLGVCMVSKEGTCGIHYKY 386 >UniRef50_C5A3E4 [NiFe] hydrogenase maturation protein (HypD) n=4 Tax=Euryarchaeota RepID=C5A3E4_THEGJ Length = 374 Score = 506 bits (1304), Expect = e-142, Method: Composition-based stats. Identities = 136/373 (36%), Positives = 199/373 (53%), Gaps = 13/373 (3%) Query: 2 RFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENV 61 + YR E +L+E ++E A L + +RIM VCG H I + G+ LLPENV Sbjct: 5 SVLAPYRDREIAQKLVEKIKEEAKTL----DGEIRIMHVCGTHEDTITRSGIRSLLPENV 60 Query: 62 EFIHGPGCPVCVLPMGRIDTCVEIASH-----PEVIFCTFGDAMRVPGKQGSLLQAKARG 116 + + GPGCPVC+ P+ I I E+I TFGD ++P GS K+ G Sbjct: 61 KVVSGPGCPVCITPVEDIVAMQLIMKKAREEGDEIILTTFGDMYKIPTPMGSFADLKSEG 120 Query: 117 ADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHI 176 DVR+VYS DA K+A+ENP + VV F GFETT TA L D++NF + H Sbjct: 121 YDVRVVYSIYDAYKMAKENPDKTVVHFSPGFETTTAPTAGMLNAVVNEDIENFKIYSVHR 180 Query: 177 TLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGV 236 + L++Q + IDA + GHVS +IG + F++ + P V+AGFEP D+L + Sbjct: 181 LTPQGIEVLIKQK-SRIDALIDAGHVSTIIGVRGWEFLSEKYGIPQVIAGFEPNDVLLAI 239 Query: 237 VMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLT 296 ++L++ ++V N+Y+R V GN++AQ+ + F V D++WR LGV +G+ + Sbjct: 240 LLLIRMYKEGDARVVNEYKRAVKYEGNVVAQELMNRYFKVV-DAKWRALGVFPKTGLEVR 298 Query: 297 PDYQRFDAEAHFRPAPQQVCDD--PRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMV 354 +++ + +R + D CG VL G P CP FG TC P+ G MV Sbjct: 299 DEFKELEIRNSYRVEVPKNLPDLEKGCLCGAVLRGLAMPTDCPHFGKTCTPRHPIGPCMV 358 Query: 355 SSEGACAAWYQYR 367 S EG C +Y+Y Sbjct: 359 SYEGTCHIFYKYG 371 >UniRef50_Q3ABW4 Hydrogenase expression/formation protein HypD n=2 Tax=Carboxydothermus hydrogenoformans RepID=Q3ABW4_CARHZ Length = 358 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 135/348 (38%), Positives = 199/348 (57%), Gaps = 2/348 (0%) Query: 22 ERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDT 81 + ++ + IMEVCG HT A+F+ G+ LLP+N+ I GPGCPVCV + Sbjct: 13 REIMEIVQKSDLTINIMEVCGTHTMALFEHGIRSLLPQNINLISGPGCPVCVTGEEIMVE 72 Query: 82 CVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVV 141 E+ V TFGD ++VPG+ +L KA+G V++ YSP +A++ A++NP +VV Sbjct: 73 AFELLEKHNVTLFTFGDMLKVPGEGRTLSILKAQGFSVKVAYSPRNAIEFAEKNPNIEVV 132 Query: 142 FFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGH 201 FFG GFETT P T+ +A + ++NF F T+ P L L+E ID F+ PGH Sbjct: 133 FFGAGFETTAPALGATILEAYTKKLKNFSMFLAVKTVPPALGFLVEHNSL-IDGFILPGH 191 Query: 202 VSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDA 261 VS VIG A+ FI ++ P V GF +LL G+ ++V+ + N Y VV + Sbjct: 192 VSAVIGAKAFRFITENYQIPAAVTGFTAEELLLGISLVVKSILKKEPSYYNAYPHVVREQ 251 Query: 262 GNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRA 321 GN+ AQ+ I +VF GD+ WRG+G I SG+ + Y ++DA + + Sbjct: 252 GNVEAQRIIEEVFE-KGDANWRGIGNIPLSGLFIRERYSQYDARKKYGLREKPPIVPRGC 310 Query: 322 RCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQ 369 +CGE++ G+ P +CPLF C P+ GA MVSSEG+CAA+Y+Y ++ Sbjct: 311 KCGEIMLGRMLPPECPLFAKGCTPEKPVGACMVSSEGSCAAYYKYGRR 358 >UniRef50_C6QQX3 Hydrogenase formation HypD protein n=2 Tax=Bacillaceae RepID=C6QQX3_9BACI Length = 369 Score = 503 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 148/368 (40%), Positives = 223/368 (60%), Gaps = 2/368 (0%) Query: 3 FVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVE 62 +D Y + + L++ ++E A +R MEVCG HT A+ + G+ + L +++ Sbjct: 4 LIDPYTSSKLSRALLDEVKELAKQFQKEFQRIPAFMEVCGSHTMALARTGVKKALQDDIR 63 Query: 63 FIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIV 122 I GPGCPVCV ID + + + + I CTFGD MRVPG G+L+QAK G D+R+V Sbjct: 64 LISGPGCPVCVTDQAAIDAMISLTAGSDRIICTFGDMMRVPGSYGTLMQAKTEGKDIRVV 123 Query: 123 YSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTL 182 YSP+DA+++A++NP ++V+F G+GFETT+PT A L++A+ +V NF + P L Sbjct: 124 YSPVDAVRIAEQNPQKEVIFLGIGFETTIPTLAAALKEAEENEVDNFSIWMAAKLTEPIL 183 Query: 183 RSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQ 242 R LL + +D FL PGHVSMV+G + F+A+++H P V++GFE ++LL + L+ Sbjct: 184 RHLLNNKEVALDGFLLPGHVSMVMGRKHFEFLAAEYHLPGVISGFEAIELLSSLRQLLLL 243 Query: 243 KIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRF 302 + ++ V N YR VV + GN A+ + F + D WRG+GVI SG+ + +Y++F Sbjct: 244 ALEQNALVVNDYRNVVSEEGNSHAKYWMNHYFS-SCDEPWRGIGVIAQSGMDIREEYRQF 302 Query: 303 DAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAA 362 +A+ F + RCGEV+ G P +C LFG C P G MVSSEG+CAA Sbjct: 303 NAKEKFSVPMRSPRKTK-CRCGEVIRGLIDPPECSLFGKACTPLNPIGPCMVSSEGSCAA 361 Query: 363 WYQYRQQE 370 +YQY ++E Sbjct: 362 YYQYMREE 369 >UniRef50_A6LXR6 Hydrogenase formation HypD protein n=9 Tax=Clostridium RepID=A6LXR6_CLOB8 Length = 359 Score = 500 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 132/354 (37%), Positives = 211/354 (59%), Gaps = 4/354 (1%) Query: 20 LRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRI 79 ++ + + + + +MEVCG HT A+ K G QL+ N+ + GPGCPVCV P G I Sbjct: 7 IKNILNEIQKSPVKKFNVMEVCGTHTQALSKLGFRQLVNPNINLLSGPGCPVCVTPEGYI 66 Query: 80 DTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRK 139 D +E+ + VI TFGD MRV G + +L++ + +G D++++YSP+D++ LA+EN ++ Sbjct: 67 DAAIELLKNSNVILSTFGDMMRVNGSRENLIKQREKGKDIKVLYSPLDSIALAEENKDKE 126 Query: 140 VVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAP 199 +VF G+GFETT P A+ ++ A+ ++++N F + P L +L+QP++ I+ + P Sbjct: 127 IVFLGVGFETTTPIIALAVKIAQEKNIRNISFLIGMKRMEPILHYILKQPNHNINGLMCP 186 Query: 200 GHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVP 259 GHV+ V G D + FI +++ P V+AGFE LD+ + L +Q+ + EN Y+ V Sbjct: 187 GHVAAVKGADYFKFIVEEYNIPAVIAGFEALDIAGALYFLTKQQNKTEKRFENLYKTCVS 246 Query: 260 DAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDP 319 GN A + I++VF + EWRG+GVI+ SG L Y+++DA F + + Sbjct: 247 QEGNKRANELISEVFTY-CEHEWRGIGVIKDSGFTLREKYKKYDASERFGINLSKTSEKN 305 Query: 320 ---RARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQE 370 C E+L GK P++C LFG C P+ G MVS+EG+C+ +Y+YR E Sbjct: 306 YIRACACSEILLGKKLPNKCELFGKGCTPEHPIGPCMVSTEGSCSIFYKYRGVE 359 >UniRef50_Q1NML6 Hydrogenase formation HypD protein n=4 Tax=Proteobacteria RepID=Q1NML6_9DELT Length = 408 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 173/415 (41%), Positives = 229/415 (55%), Gaps = 52/415 (12%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M+F+DEYR P +L+ + + T RP IME+CGGHTHAI + G+DQLLP Sbjct: 1 MKFIDEYRDPALARELLAGI-------AATVSRPWVIMEICGGHTHAIIRHGIDQLLPAE 53 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQG------------- 107 +E +HGPGCPVCV P ID + +A PEVIF +FGD +RVPG + Sbjct: 54 IELVHGPGCPVCVTPASLIDQAIALAGRPEVIFTSFGDMLRVPGSRAENGDTIPIFHTAK 113 Query: 108 ------------------SLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFET 149 SL QA+A GADVR+VYSP++A++LA++ P R+VVFF +GFET Sbjct: 114 GGKRDTAAMKNRYGVPVFSLQQARAAGADVRMVYSPLEAVELARQQPHRQVVFFAVGFET 173 Query: 150 TMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTD 209 T P A+ + QA + NF H+ + P + +LL PDN + FLA GHV V G Sbjct: 174 TAPGNAMAVLQAARLGLANFSLLVSHVLVPPAIAALLAAPDNRVQGFLAAGHVCTVTGWQ 233 Query: 210 AYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQA 269 Y + + P+V AGFEP+D+L ++MLV+Q A ++VENQYRR V GN AQ A Sbjct: 234 EYQPLVERYRVPMVPAGFEPVDILAAILMLVRQLEAGRAEVENQYRRAVRRQGNPAAQAA 293 Query: 270 IADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFR-------------PAPQQVC 316 + +VF V D EWRGLG I SG+ L P + FDA A P Sbjct: 294 VEEVFMVV-DQEWRGLGPIPRSGLQLRPQFAAFDAAAKLGPEPAPAAQTAPAAPEQAADA 352 Query: 317 DDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQES 371 G +L G KP QCP F C+P+ GA MVS EGAC A+Y+ ++ + Sbjct: 353 GANPCISGAILRGIKKPLQCPAFAGACHPENPLGATMVSREGACHAYYRANRRAA 407 >UniRef50_C6PPY9 Hydrogenase formation HypD protein n=6 Tax=Clostridiales RepID=C6PPY9_9CLOT Length = 352 Score = 499 bits (1286), Expect = e-140, Method: Composition-based stats. Identities = 147/354 (41%), Positives = 214/354 (60%), Gaps = 7/354 (1%) Query: 16 LIEHLRERASHLSYTAERP-LRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVL 74 + E++++ A + + P LRIMEVCG HTH IF+ G+ +LPEN+E I GPGCPVCV Sbjct: 1 MTENIKKTAKEIIQAYDGPKLRIMEVCGTHTHEIFRLGIRSILPENIELISGPGCPVCVT 60 Query: 75 PMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQE 134 P+G ID + +A H V CTFGD +RVPG + SL A+++GA V+IVYSP+DA + A+ Sbjct: 61 PVGFIDEAITLALHHNVTICTFGDLVRVPGSEMSLAGARSKGAKVQIVYSPIDAYEYAKN 120 Query: 135 NPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGID 194 + +VVF +GFETT P + +++++AK ++NF + T+ ++L D Sbjct: 121 HLEEQVVFLSVGFETTTPASCLSVKKAKEAGLENFALLTANKTMPRAYKTL----KGSAD 176 Query: 195 AFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQY 254 AFL PGHV + GT + ++ V+ GF +++ + +++ + S +N Y Sbjct: 177 AFLYPGHVHAITGTKLCESLVNE-GVSGVITGFTANEIMTALAVVITRLQEGGSFFKNCY 235 Query: 255 RRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQ 314 RVV G+ AQ ++++ N DSEWRGLGVIE+SG+ L Y+ FDA + F Sbjct: 236 PRVVTREGSKAAQTIVSELME-NCDSEWRGLGVIENSGLKLKEAYKEFDARSKFNLPKIT 294 Query: 315 VCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQ 368 +P RCG+VL GKCKP C +FG C P GA MVS+EGAC+A+YQY Sbjct: 295 GKSNPACRCGDVLQGKCKPSDCRVFGKGCTPLHPVGACMVSNEGACSAYYQYGG 348 >UniRef50_D1Y5N2 Hydrogenase expression/formation protein HypD n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y5N2_9BACT Length = 360 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 151/357 (42%), Positives = 196/357 (54%), Gaps = 2/357 (0%) Query: 15 QLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVL 74 + + L+ P+R+MEVCG HT +IF+ GL LLPE+V + GPGCPVCV Sbjct: 4 SFLSSAARTLAELARRTG-PVRLMEVCGTHTVSIFRSGLRSLLPEDVALLSGPGCPVCVT 62 Query: 75 PMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQE 134 +D + AS P V C++GD +RVPG+ GSL +A RG DVR+V S MD + LA Sbjct: 63 DQADVDQAIAAASLPGVTLCSYGDMLRVPGRGGSLREAAGRGGDVRVVMSAMDVIPLALS 122 Query: 135 NPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGID 194 P R+ VFF +GFETT P TA+ LQ+AK V N +H ++P L L + P G+ Sbjct: 123 EPRREFVFFAIGFETTTPQTALLLQEAKRLGVGNVSVLAEHKRVLPALELLAQDPQIGVK 182 Query: 195 AFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQY 254 FL PGHVS +IG + Y +A + V GFE +L + L+ Q + ++ N Y Sbjct: 183 GFLLPGHVSSIIGLEPYGILAEKYRVACAVGGFEGEQILLALCALLSQIVGGEPRIVNAY 242 Query: 255 RRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQ 314 V D GN A+ I + F DS WRGLG I SG+ L Y DA A P Sbjct: 243 PSGVRDRGNPRARALIDECFT-PCDSVWRGLGTIPQSGLKLRAPYACRDARAKLALPPAV 301 Query: 315 VCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQES 371 P RCGEVL G+ P QC LFG C PQ G MVSSEG+C AWY+Y ++ Sbjct: 302 NVPIPGCRCGEVLRGRLAPPQCALFGKNCTPQEPAGPCMVSSEGSCGAWYRYGRRGG 358 >UniRef50_D1PPE6 Hydrogenase expression/formation protein HypD n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPE6_9FIRM Length = 371 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 169/371 (45%), Positives = 223/371 (60%), Gaps = 8/371 (2%) Query: 3 FVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVE 62 +++ +R P L++ +R R H + P+RIME+CG HT AI K GL LL VE Sbjct: 7 WLNAFRHPAGAADLVQDIRRRIEHHA-----PVRIMEICGTHTMAIAKAGLRSLLAPGVE 61 Query: 63 FIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQG--SLLQAKARGADVR 120 I GPGCPVCV P G +D +E++ P +I T+GD +RVPG +LL+ +A GADVR Sbjct: 62 LISGPGCPVCVTPAGDMDAALELSGRPGLIVATYGDLLRVPGSVRGDTLLRRRAAGADVR 121 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 VYS DA+ LA+ NP R+VVF G+GFETT P TA + A + NF FC P Sbjct: 122 TVYSAADAVDLARANPDREVVFLGVGFETTTPGTAACVLDAAESGLANFSVFCLLKRTEP 181 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 LR+LL PD G+DA L PGHV+ V G DA+ F+ ++ P VV+GFE D+L V LV Sbjct: 182 ALRALLSAPDCGVDALLCPGHVAAVTGVDAFAFLPREYGLPAVVSGFEAGDVLYSVWRLV 241 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 +EN+Y R+V AGN A+ A VF + DS WRGLG I +SG+ L P+Y Sbjct: 242 CMVCGGTPALENEYSRLVTAAGNTAARAAAEAVF-LPADSLWRGLGEIPASGLALRPEYA 300 Query: 301 RFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGAC 360 RFDA + + ++ + P RCG V+ G P QCPLFG C P+ G MVSSEGAC Sbjct: 301 RFDAAVRYGLSRRRGTEPPGCRCGSVIRGVLPPEQCPLFGKVCRPEDPVGPCMVSSEGAC 360 Query: 361 AAWYQYRQQES 371 AA ++YR ++ Sbjct: 361 AAAWKYRPADA 371 >UniRef50_Q0W4N4 Hydrogenase expression/formation protein (Maturation factor) n=8 Tax=Euryarchaeota RepID=Q0W4N4_UNCMA Length = 357 Score = 496 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 142/359 (39%), Positives = 195/359 (54%), Gaps = 18/359 (5%) Query: 11 EQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCP 70 + L + + A A R ++IM VCG H + I K G+ LLP NV+ + GPGCP Sbjct: 6 QAAKALAGQIEKLA------AGREIKIMHVCGTHEYTITKSGIRSLLPANVKVVMGPGCP 59 Query: 71 VCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALK 130 VCV P ID CVE+A + I CT+GD +RVPG + SL D+RIV S A+ Sbjct: 60 VCVTPQSEIDACVELAEQGK-IICTYGDLLRVPGTKSSLYDTV---GDIRIVQSIAQAVD 115 Query: 131 LAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPD 190 +A++ P R+VVF +GFETT PTTA L +NF H + P ++ L++Q + Sbjct: 116 IARQTPDREVVFMAVGFETTAPTTAAVLLS---NPPENFSIIVSHRLVPPAMKWLMQQGE 172 Query: 191 NGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKV 250 ++ FL PGHV V+G Y P V+AGF+ +++L G+ +LV+Q + + V Sbjct: 173 ANLNGFLLPGHVCTVMGIHEYEAFP----VPQVIAGFDAMEVLYGLYLLVKQIVEGRAVV 228 Query: 251 ENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRP 310 EN Y R V GNL AQ+ +A+VF D WRG VI SG L P ++++DA F Sbjct: 229 ENAYARAVKPEGNLKAQKMMAEVFE-PCDIMWRGFPVIPDSGYKLKPQFEKYDALKKFGI 287 Query: 311 APQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQ 369 + V C E+L G +P C LFG C P GA MVS+EGAC WY Y + Sbjct: 288 ELKDVKCTTGCLCNELLRGVKEPTDCKLFGKACTPLKPVGACMVSTEGACRIWYTYGKA 346 >UniRef50_B5Y919 Hydrogenase expression/formation protein HypD n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y919_COPPD Length = 347 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 136/344 (39%), Positives = 188/344 (54%), Gaps = 1/344 (0%) Query: 30 TAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHP 89 +++ P IMEVCG HTH +F+ G+ LP V+ I GPGCPVCV + + +A++ Sbjct: 5 SSDNPATIMEVCGTHTHELFRTGIRFALPNWVKLISGPGCPVCVTDDKDLAKVILMATNY 64 Query: 90 EVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFET 149 ++ TFGD ++VP GSL ++ G +V++VYSP+DA+K A E+ +FF +GFET Sbjct: 65 DLTVITFGDMIKVPTPFGSLASLRSEGKNVQVVYSPVDAVKYAMEHQEETCLFFAVGFET 124 Query: 150 TMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTD 209 TMP A ++ AR+V N +F H ++P L +L ID L PGHVS +IG+ Sbjct: 125 TMPAVAAAIKDRLARNVDNLFFLVNHKRIVPALYALFGSGRVKIDGLLLPGHVSAIIGSK 184 Query: 210 AYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQA 269 Y + S + P VV GF +L+G+ +L++ + V N Y VV + GN AQ Sbjct: 185 PYEPVLSKYDVPGVVTGFSKDQMLRGINILLKLIVNDKFDVINAYPEVVREEGNKKAQAL 244 Query: 270 IADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTG 329 I F V G + WRG G I S + L ++ DAE F V P RC +V+ G Sbjct: 245 IESYFEVGG-AFWRGFGFIPDSAMVLKKEFSDLDAETQFPVEEPNVSPPPGCRCADVVLG 303 Query: 330 KCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQESEA 373 P CPLFG TC Q G MVSSEG CAAW +Y S Sbjct: 304 AADPPSCPLFGKTCTLQNPVGPCMVSSEGTCAAWLRYGGATSNG 347 >UniRef50_A5ULS2 Hydrogenase expression/formation protein, HypD n=3 Tax=Methanobrevibacter RepID=A5ULS2_METS3 Length = 348 Score = 489 bits (1260), Expect = e-137, Method: Composition-based stats. Identities = 138/357 (38%), Positives = 202/357 (56%), Gaps = 15/357 (4%) Query: 14 MQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCV 73 +L++ + E A+ P++IM VCG H HAI + G+ LLP VE I GPGCPVCV Sbjct: 6 KELLDKINEIAT--------PVKIMHVCGSHEHAIMENGIRSLLPPEVEIIAGPGCPVCV 57 Query: 74 LPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQ 133 +P ID C+E+ V TFGD +RVPG + SL +AKA G DVR+VY A+++A+ Sbjct: 58 VPSREIDECLELVDR-GVTVTTFGDMLRVPGSERSLAEAKAEGGDVRVVYGINKAIEIAE 116 Query: 134 ENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGI 193 + VVF GFETT PTTA + A +NF H + P + L+ + + Sbjct: 117 KE-DNDVVFMAAGFETTAPTTAAEIL---AEPPENFSVLSCHRLIPPAIDYLINSGETNL 172 Query: 194 DAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQ 253 +A + PGHV +IGT + ++++D+ P VAGF PLD+L V M+++Q K++N+ Sbjct: 173 NALIEPGHVCTIIGTKPFEYLSTDYGIPQAVAGFNPLDILMSVYMILRQIRDDTPKIDNE 232 Query: 254 YRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQ 313 Y R V D GN++AQ+ I VF V G EWRG I +S + + ++ +++A A + + Sbjct: 233 YNRAVRDEGNIIAQKVIDQVFDV-GSREWRGFPKIPNSILEIKDEFSQYNARAKYDIEVK 291 Query: 314 QVCD-DPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQ 369 V + CG +L G +P C LF +CNP GA MVS EG C ++Y + Sbjct: 292 DVKEAPKGCICGPILRGLARPEDCKLFRKSCNPLHPIGACMVSKEGTCNIAHRYSRD 348 >UniRef50_Q46BF2 Hydrogenase expression/formation protein n=8 Tax=Euryarchaeota RepID=Q46BF2_METBF Length = 372 Score = 489 bits (1259), Expect = e-137, Method: Composition-based stats. Identities = 150/373 (40%), Positives = 206/373 (55%), Gaps = 26/373 (6%) Query: 10 PEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGC 69 PE +L+E +R+ ++PLRIM VCG H I K+GL +LP+N+E I GPGC Sbjct: 13 PEIEKKLLERIRD--------FDKPLRIMHVCGTHERTIAKYGLRSILPKNIEVISGPGC 64 Query: 70 PVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDAL 129 PVCV P I+ + +A TFGD MRVPG SLL AK+ GA+V++VYS DA+ Sbjct: 65 PVCVTPEEDINIAIALA-KSGATVVTFGDMMRVPGSAESLLDAKSEGANVKMVYSIDDAI 123 Query: 130 KLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQP 189 LA++ P +VVFFG+GFETT+P A L + +NF P + L Sbjct: 124 ALAEKKPELEVVFFGIGFETTVPANAAALL---RKTPENFSLLTSQKQTPPAVEFLARDA 180 Query: 190 DNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSK 249 D +DAF+APGHV+ +IGT + +A P+ V+GFEP D+L G+ +L Q S+ Sbjct: 181 D--VDAFIAPGHVATIIGTKPFESLAEK-GFPIAVSGFEPGDILLGINLLQLQAEEGISR 237 Query: 250 VENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFR 309 V+N Y R V GN +A + + +VF + DSEWRG+G IE+SG+ L +++ DA Sbjct: 238 VDNGYPRAVKPEGNQIALKIMNEVFETS-DSEWRGIGKIENSGLVLRKEFEEKDAAKKHE 296 Query: 310 P----------APQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGA 359 D R C +LTGK KP QCP FG C P+ G MVS EG Sbjct: 297 DLYASALEDVRKKTGGKDKKRCICAAILTGKAKPSQCPNFGKECTPKNPAGPCMVSQEGM 356 Query: 360 CAAWYQYRQQESE 372 C W++Y ++ Sbjct: 357 CYNWFRYSREGGN 369 >UniRef50_C1SHT6 Hydrogenase maturation factor n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHT6_9BACT Length = 357 Score = 489 bits (1259), Expect = e-137, Method: Composition-based stats. Identities = 150/366 (40%), Positives = 206/366 (56%), Gaps = 11/366 (3%) Query: 3 FVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVE 62 ++++R + +LI+ + + A+ R MEVCG HT AI KFG+ +LP N++ Sbjct: 1 MIEDFRNADICKKLIKQIEKEATKDV------YRFMEVCGSHTMAIAKFGIKSVLPSNID 54 Query: 63 FIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQG-SLLQAKARGADVRI 121 + GPGCPVCV P ID EIA VI TFGD MRVPG +G +L + K+ G DVRI Sbjct: 55 LVSGPGCPVCVTPQCEIDALFEIAEKGAVI-ATFGDMMRVPGSKGQNLQKMKSEGCDVRI 113 Query: 122 VYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPT 181 V+SP+D LK+A+E ++VVF G+GFETT P A A+ V+N + T+ Sbjct: 114 VFSPLDTLKIAKET-DKEVVFVGIGFETTAPAVAGLAIMAEKAGVKNVSITPYNKTMPEV 172 Query: 182 LRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQ 241 L ++ + I+ F+ PGHV+ V G Y+ I + V+ GFEP+D+L ++ +V+ Sbjct: 173 LSLIISDKNLQINGFVCPGHVTAVTGIGLYDPIVKE-GMAAVITGFEPVDVLSSILEMVR 231 Query: 242 QKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQR 301 Q K N Y RVV D GN A+ I V+ G WRG+G IE SG+ +Y++ Sbjct: 232 QVNTEDFKAVNMYSRVVADEGNAKARDVINAVYEKQG-CWWRGIGFIEESGLAFRKEYEQ 290 Query: 302 FDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACA 361 FDA F + + CGEVL G KP +C LFG C PQ G MVSSEGACA Sbjct: 291 FDAFRKFDVTLEGDDEIAGCSCGEVLKGYIKPTECALFGTACTPQNPVGPCMVSSEGACA 350 Query: 362 AWYQYR 367 A Y+Y Sbjct: 351 AAYKYG 356 >UniRef50_B2KBC4 Hydrogenase formation HypD protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBC4_ELUMP Length = 346 Score = 483 bits (1245), Expect = e-135, Method: Composition-based stats. Identities = 147/349 (42%), Positives = 210/349 (60%), Gaps = 7/349 (2%) Query: 22 ERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDT 81 ++ + L+ R + IMEVCG HT++I K GL LL EN+ I GPGCPVCV G I+ Sbjct: 3 KKLNDLAKRLSRKVNIMEVCGTHTNSIAKNGLKSLLNENINLISGPGCPVCVSADGDIEA 62 Query: 82 CVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDA-LKLAQENPTRKV 140 +++A + I TF D +RVPG+ GSL +AKA GADVR++YSP+DA L+ + N + V Sbjct: 63 AIDLALKKDNIIFTFADMLRVPGRNGSLQEAKASGADVRVIYSPLDAFLETGKTN--KTV 120 Query: 141 VFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPG 200 + GFETT P A+ L++AK +NF+ F + P + +LL +N ID FL PG Sbjct: 121 ILLASGFETTAPLIAVCLKKAKEAGFKNFFVFPVLKLINPAITALL-SEENKIDGFLLPG 179 Query: 201 HVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPD 260 HVS+VIG Y+FI+ F++P V+ GFE +++ ++ +V+Q + ++++N Y + + Sbjct: 180 HVSLVIGKKPYSFISKKFNKPGVIGGFEAEEIVAALIEIVKQLLEGKAQIQNAYP-AIKE 238 Query: 261 AGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAP-QQVCDDP 319 GN A + I DVF D+ WRG GVI SSG+ + +++ FDA F P + Sbjct: 239 EGNQTALKMIEDVFE-PYDAVWRGFGVIPSSGLKIKKEFREFDALIKFNIKPCYGGSLNK 297 Query: 320 RARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQ 368 +C EVL GK P +CPLFG C P G MVSSEGAC A Y Y + Sbjct: 298 ACKCAEVLKGKISPVKCPLFGKKCAPGKPLGPCMVSSEGACNALYNYEK 346 >UniRef50_B1L5X9 Hydrogenase maturation factor n=4 Tax=Archaea RepID=B1L5X9_KORCO Length = 379 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 136/381 (35%), Positives = 208/381 (54%), Gaps = 22/381 (5%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 MR + + R+ E ++ +RE A + ++IM CG H I +G+ L+PE Sbjct: 1 MRSLTDLRSDEIASRISSKIREIAKRVG-----SVKIMNFCGTHEWTITHYGIRYLMPEE 55 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQ-----GSLLQAKAR 115 VE + GPGCPVC+ P +D V++A + TFGDA R+ G + +L +AK Sbjct: 56 VELVAGPGCPVCITPAYYVDAVVKLAV-EGIRVMTFGDAFRLMGTKARGLPRNLEEAKQD 114 Query: 116 GADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQH 175 GADVRIVYS +DA+K+A++ ++ +FFG+GFETT P T + + +N H Sbjct: 115 GADVRIVYSVLDAIKIAKD--DKESIFFGVGFETTAPATLGPI--SSRNLPENLSLVIAH 170 Query: 176 ITLIPTLRSLLEQ-PDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQ 234 P +R +LE P + I +APGHVS + G DA+ F+A ++ P+VV+GFEP+D+L Sbjct: 171 RLTPPIMRYVLENYPGSPIRGIIAPGHVSTITGADAWRFVAEEYGIPIVVSGFEPIDVLL 230 Query: 235 GVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVH 294 ++ +V+Q +K+ N+Y R V +GN A + + + V D+ WRG+G + SG+ Sbjct: 231 SILEIVKQIDRGEAKLFNEYSRAVKASGNERALKVMEETSDVV-DAAWRGIGFVPKSGLI 289 Query: 295 LTPDYQRFDAEAHFRP-----APQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAF 349 L Y+R+DA + P +C E+ G KP +CPLF C P++ + Sbjct: 290 LKEKYERYDAFRKYGIKEISKEEWYNDSIPGCKCTEITLGIAKPTECPLFMKVCKPESPY 349 Query: 350 GALMVSSEGACAAWYQYRQQE 370 G MVS EG C W +Y E Sbjct: 350 GPCMVSGEGTCLIWAKYGSSE 370 >UniRef50_C9KK61 Hydrogenase expression/formation protein HypD n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KK61_9FIRM Length = 348 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 137/337 (40%), Positives = 187/337 (55%), Gaps = 6/337 (1%) Query: 32 ERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEV 91 +RIMEVCG HTH IF+ G+ LLPE VE I GPGCPVCV P+ ID + +A Sbjct: 17 GPKVRIMEVCGTHTHEIFRLGIRSLLPEAVELISGPGCPVCVTPVSYIDEALYLAEKCHA 76 Query: 92 IFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTM 151 CTFGD +RVPG G+L +A++RGA V++VY+P+DA+ A E+P + VF +GFETT Sbjct: 77 TICTFGDLVRVPGTAGTLAEARSRGARVQVVYTPLDAVTYATEHPEEETVFLSVGFETTT 136 Query: 152 PTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAY 211 PT + L+ A+A+ NF + T+ ++ DA+L PGHV + GT Sbjct: 137 PTACLALRHAEAQHTANFSLLTANKTMPAAYTAMASH----TDAYLYPGHVCAITGTSLP 192 Query: 212 NFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIA 271 + + VVAGF +LL+ + ++++ A N Y RVV GN AQ +A Sbjct: 193 ESLTRE-GISGVVAGFTAGELLRALATILEKVQADRPFFANCYPRVVRPEGNPAAQALVA 251 Query: 272 DVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKC 331 D+EWRGLGV++ SG+ L + DA F +P RCG +L G Sbjct: 252 AYME-PCDAEWRGLGVLKESGLQLREAFAARDARKRFALPAMTGRANPACRCGAILQGLA 310 Query: 332 KPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQ 368 +P CPL+G C P GA MVS EGAC+A+Y Y Sbjct: 311 RPVDCPLYGKACTPDHPVGACMVSREGACSAYYLYGG 347 >UniRef50_O28901 Hydrogenase expression/formation protein (HypD) n=1 Tax=Archaeoglobus fulgidus RepID=O28901_ARCFU Length = 371 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 145/360 (40%), Positives = 194/360 (53%), Gaps = 18/360 (5%) Query: 13 VMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVC 72 V++L E +RE + ++IM +CG H I K+ L LLPEN+ + GPGCPVC Sbjct: 20 VIRLSEKIRELSKEF-----ESVKIMHLCGTHEDTITKYNLRSLLPENISLLSGPGCPVC 74 Query: 73 VLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLA 132 + P I + + + TFGD RVP + SL +A G D+RIVYS D+LKLA Sbjct: 75 ITPDEDIQMVMHLLEKENITLATFGDMARVPFQGKSLFTLRAEGYDIRIVYSIFDSLKLA 134 Query: 133 QENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNG 192 E+ R VV F +GFETTMP+TAI L K +NFY F H IP + +L E Sbjct: 135 -ESSDRPVVHFAIGFETTMPSTAIALLDEK----ENFYVFSAHRFFIPAVHALCEN--TT 187 Query: 193 IDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVEN 252 +DAF+ PGHVS +IG Y I + P V+AGFEP D++ + +L++ +V N Sbjct: 188 VDAFINPGHVSTIIGVKPYREILKKYGIPQVIAGFEPEDVMLAIYLLLEAMSDGRREVIN 247 Query: 253 QYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHF---- 308 +Y R V + GN+ A +A+ VF D WRGLGV++ SG L +++FDA F Sbjct: 248 EYSRAVKEEGNVRALEAMDRVFR-KEDWSWRGLGVVKGSGGALAKRFEQFDARKVFEDAF 306 Query: 309 -RPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYR 367 P + RCG+VL G P CPLF CNP+ GA MVS EG C W Sbjct: 307 ADFQPVEDKSKRLCRCGDVLKGIATPKDCPLFMKACNPRNPVGACMVSVEGTCNIWATSG 366 >UniRef50_A3DJT1 Hydrogenase formation HypD protein n=4 Tax=Clostridium RepID=A3DJT1_CLOTH Length = 349 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 132/353 (37%), Positives = 200/353 (56%), Gaps = 9/353 (2%) Query: 14 MQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCV 73 M+ +E +++ L + ++IMEVCG HT +IFK G+ L+ ++ I GPGCPVCV Sbjct: 1 MKTLEAIKK---ELGEYEGKNIKIMEVCGTHTSSIFKNGIRSLISPRIQLISGPGCPVCV 57 Query: 74 LPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQ 133 ID VE + TFGD M+V G + SL +AKA G +V+I+YSP+ A+K+A Sbjct: 58 TASSYIDRLVEYSLKDNHCVLTFGDMMKVKGHKLSLTEAKATGGNVKILYSPLSAVKIAI 117 Query: 134 ENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGI 193 ++P + +F +GFETT P A+ +++ +++N T+IP + + E + I Sbjct: 118 KSPETQFIFAAVGFETTAPIYALMIEEIIKNNIKNLKLMTSIKTIIPAISYICEN-EKNI 176 Query: 194 DAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQ 253 DAFL PGHVS++IG+ Y +A + +P V+ GFE ++ + +++Q ++N Sbjct: 177 DAFLCPGHVSVIIGSSVYTDMALKYRKPFVIGGFEGGHIIAAIYEIIRQISNNEYSMKNM 236 Query: 254 YRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDA-EAHFRPAP 312 Y+ V GN A+ I F D WRG+G+I++SG+ L +Y+ FDA F A Sbjct: 237 YQSAVSPEGNQKAKSLIDKYFEAADD-YWRGIGIIKNSGLRLRTEYRDFDAGSTIFEDAD 295 Query: 313 QQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQ 365 +C +V+ G+ P QCPLFG C P A GA MVSSEGAC WY+ Sbjct: 296 A---APSGCKCADVILGRITPAQCPLFGKACTPLNAVGACMVSSEGACGIWYR 345 >UniRef50_A4YFA0 Hydrogenase formation HypD protein n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YFA0_METS5 Length = 375 Score = 470 bits (1210), Expect = e-131, Method: Composition-based stats. Identities = 132/370 (35%), Positives = 189/370 (51%), Gaps = 12/370 (3%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 + + YR P L R R L+ + + IM VCG H I +G+ LLPEN Sbjct: 5 LSLLKYYRDPTLAKAL----RLRIEELAKKIQENIMIMHVCGSHEWTITHYGIRSLLPEN 60 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 VE GPGCPVC+ P ID V++A V+ T+GD R G + SL +A+A G DVR Sbjct: 61 VEVRAGPGCPVCITPATDIDDAVKLA-MDGVVVTTYGDMSRARGTKMSLEEARAMGGDVR 119 Query: 121 IVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIP 180 ++Y DA+K+A+ P + +FF +G +TT P TA + + N F + Sbjct: 120 VIYGVQDAVKMARREPNKDFLFFAVGMDTTAPATAFEMMKGV---PDNLSFLVSYRYTPA 176 Query: 181 TLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLV 240 S+++ GIDAF++ GH V G Y +P+V GFEP+D+L + M++ Sbjct: 177 IQGSVMDSNVLGIDAFISAGHSVTVTGLRPYYEYFLRSKKPMVATGFEPIDVLMSIYMIL 236 Query: 241 QQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQ 300 +Q K+EN+Y R V GN+ AQQ + VF + D RG+ V +G L ++ Sbjct: 237 KQIDEGKPKIENEYTRSVTWEGNVKAQQVMERVFDL-EDGYVRGVAVFPKAGFRLKEEFS 295 Query: 301 RFDAEAHFRPAPQQVCDDP---RARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSE 357 + DA + + D ARCGEV+ G P +CPL+G TC P+ GA MVS E Sbjct: 296 KKDARVQYGLKDRTKSKDEYVAGARCGEVVMGLIDPPECPLYGKTCKPEDPKGAPMVSQE 355 Query: 358 GACAAWYQYR 367 G C W +R Sbjct: 356 GTCWIWATHR 365 >UniRef50_A1SU74 Hydrogenase formation HypD protein n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SU74_PSYIN Length = 372 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 131/366 (35%), Positives = 194/366 (53%), Gaps = 11/366 (3%) Query: 5 DEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFI 64 D ++ E V +L + ++ A+ ++ PL+IM +CGGH +AI ++ + Q LP +++ I Sbjct: 10 DAFKDREIVNKLAQEIKLIAAQMA-----PLKIMHICGGHENAIVRYAIRQFLPAHIKVI 64 Query: 65 HGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYS 124 GPGCPVCV P+ ID + +A P+V TFGD +RVP SL +A+ G V++VYS Sbjct: 65 AGPGCPVCVCPVESIDEAITLALLPKVTLLTFGDILRVPATNSSLEEARVNGGSVKVVYS 124 Query: 125 PMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRS 184 P+DA+K AQ++P + VFF +GFETT A + +N +F + + P L+ Sbjct: 125 PLDAIKFAQDSPQQTFVFFSVGFETTAAGIAGLIHSGV---PKNLFFLIANRYMPPVLKL 181 Query: 185 LLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKI 244 L+E D+ + FL GH + + G Y+F+ +F P AGFEP+D+L + L+ Sbjct: 182 LMEVHDDSLQGFLLAGHATAITGLGVYDFMRDEFKLPCATAGFEPVDILLAIRELLTLIK 241 Query: 245 AAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDA 304 +V N Y RV+ + GNL AQQ + +VF + WRG+ +E S L Y DA Sbjct: 242 NDQHQVINCYSRVIKNEGNLKAQQCLKEVFDL-IPGVWRGIDKVEDSAYVLKDKYAFLDA 300 Query: 305 EAHFRPAPQQVC--DDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAA 362 P P C V+ G+ +P C LF C P FG MVS EG C Sbjct: 301 RKQLACKPPYSPQAHHPSCLCHRVMLGEVEPQDCKLFKKACTPSKPFGPCMVSPEGTCHV 360 Query: 363 WYQYRQ 368 Y Y + Sbjct: 361 RYSYSE 366 >UniRef50_Q2Y8F6 Hydrogenase formation HypD protein n=8 Tax=Proteobacteria RepID=Q2Y8F6_NITMU Length = 385 Score = 457 bits (1177), Expect = e-127, Method: Composition-based stats. Identities = 135/372 (36%), Positives = 194/372 (52%), Gaps = 20/372 (5%) Query: 12 QVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPV 71 + ++ + E +RP+RIM VCGGH +I G+ LPE VE I GPGCPV Sbjct: 4 TAQEWLKKIHEL------PLDRPVRIMNVCGGHERSITMAGIRSALPECVELIAGPGCPV 57 Query: 72 CVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPG-----KQGSLLQAKARGADVRIVYSPM 126 CV P + +++A ++I TFGD +RVP + SL QAKA GADVR + SP Sbjct: 58 CVCPEEDVYQAIQLALRTDMILVTFGDMLRVPVNVPKKEVRSLEQAKAAGADVRPIASPR 117 Query: 127 DALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLL 186 +A+++AQ+N R+VVFF GFETT A L + N P + LL Sbjct: 118 EAVRIAQQNAKRQVVFFAAGFETTTAPVAAMLLEGV---PDNLSILLSARRTWPAVAMLL 174 Query: 187 EQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAA 246 + G D +APGHVS V+G + +NF+ P VAGF+P+ LL + +++Q + Sbjct: 175 DSDAPGFDGLVAPGHVSTVMGPEEWNFVFEKHDIPTAVAGFQPVSLLAAMYSVLRQLLEG 234 Query: 247 HSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEA 306 ++N Y +V GN AQ +A+ + D+ WRG+GVI SSG L + + DA Sbjct: 235 KRFLDNCYPELVRPGGNRAAQAQLAEA-LNDTDANWRGIGVIPSSGFSLQKRFAKNDARL 293 Query: 307 HFRPAPQQVCD-----DPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACA 361 F + P C V+ G+ P+QC ++G+ C P+T G MVS EGAC Sbjct: 294 QFPDFDTENRKRAGQMPPGCECASVVLGRINPNQCKIYGHACTPKTPVGPCMVSDEGACR 353 Query: 362 AWYQYRQQESEA 373 W+ +E+ A Sbjct: 354 IWWAAGVRENTA 365 >UniRef50_C5CEU3 Hydrogenase formation HypD protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEU3_KOSOT Length = 338 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 137/337 (40%), Positives = 194/337 (57%), Gaps = 4/337 (1%) Query: 33 RPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVI 92 + R+ME+CG HTHA+ ++GL +L E +E + GPGCPVCV ID + + I Sbjct: 4 KKYRVMEICGTHTHALMRYGLKELYSERLELVCGPGCPVCVTSQSDIDRILYLCDLGMRI 63 Query: 93 FCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMP 152 + TFGD M+VPGK G+L + KA GA VR VY+P+ + +++P R VF +GFETT P Sbjct: 64 Y-TFGDLMKVPGKNGNLRERKALGACVREVYNPLWIVDDMKKDPARGAVFVAIGFETTAP 122 Query: 153 TTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYN 212 A +++ + ++N Y + + P + +LLE +N +D F+ PGHVS +IG Y Sbjct: 123 LIASLIEEIERERIENLYVYLLLKLIPPAMEALLEDEENKLDGFICPGHVSTIIGERPYI 182 Query: 213 FIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIAD 272 +A +P V+AGF +L + + + + V N Y V GNL A++ I + Sbjct: 183 KLAEKVKKPFVIAGFTREELTVALEKMSEMLEKSAYGVVNVYASAVKPEGNLDAREKIKN 242 Query: 273 VFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCK 332 F V D+ WRGLG I +SG+ L Y+RFD AHF+ D CGEVLTGK K Sbjct: 243 FFEV-TDTLWRGLGTIPNSGLKLREKYRRFDVMAHFQMENVSSEDP--CPCGEVLTGKIK 299 Query: 333 PHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQ 369 P +C LFG C P+T G MVSSEGAC A + Y ++ Sbjct: 300 PEECQLFGTLCLPETPVGPCMVSSEGACHASFLYGRK 336 >UniRef50_A7H7N4 Hydrogenase formation HypD protein n=5 Tax=cellular organisms RepID=A7H7N4_ANADF Length = 379 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 134/369 (36%), Positives = 189/369 (51%), Gaps = 15/369 (4%) Query: 6 EYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIH 65 ++R P + L E + + R + +M VCG H AI +FGL +LP +E I Sbjct: 11 KFRDPVRARALAEAIAREVDAI----GRTVPVMHVCGSHEQAIARFGLRAVLPPGLELIM 66 Query: 66 GPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSP 125 GPGCPVCV +D V +A CT+GD +R+PG SL A+A GA V +VYS Sbjct: 67 GPGCPVCVTDGPEVDEAVALALQ-GARVCTYGDMLRLPGTARSLADAQADGAKVEVVYSV 125 Query: 126 MDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSL 185 A++LAQ++P +VVF G GFET T T A A +NF H + + + Sbjct: 126 SQAVELAQKHPEDEVVFLGSGFET---TAVATAAVALASPPKNFSILSVHKYVPAAMNVV 182 Query: 186 LEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIA 245 E P I+ ++A GH +++ G + A+ +P+VVAGFEPLD+L ++ LV+ Sbjct: 183 AESPQTNIEGYIAAGHAAIITGWGIFEPFAARTGKPVVVAGFEPLDILAAILQLVELMRQ 242 Query: 246 AHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAE 305 ++V N Y R V GNL AQ+++ VF WRG+ + + L P+Y DA Sbjct: 243 GKAEVANVYPRCVTKEGNLPAQRSLWKVFR-PVTGTWRGIAEVRDGNLDLRPEYAHLDAR 301 Query: 306 AHFRPAPQQVCDD------PRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGA 359 FR V D+ CG ++ G P C LFG TC P++ GA MVSSEG Sbjct: 302 KRFRIDTAPVRDEDAEEAAKGCICGSIMLGLANPGDCALFGKTCVPESPVGACMVSSEGQ 361 Query: 360 CAAWYQYRQ 368 C W+ Y Sbjct: 362 CRIWHTYGG 370 >UniRef50_Q8NKV0 Membrane-bound NiFe hydrogenase n=1 Tax=Acidianus ambivalens RepID=Q8NKV0_ACIAM Length = 394 Score = 451 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 132/380 (34%), Positives = 192/380 (50%), Gaps = 22/380 (5%) Query: 7 YR-APEQVMQLIEHLRERASHLSYTAER-PLRIMEVCGGHTHAIFKFGLDQLLPENVEFI 64 +R E + E + + A +S R ++IM CG H +GL L+PE VE I Sbjct: 11 FRENSELAKSITEQIHKLAPIVSKEIGREKIKIMNFCGSHEWVTTHYGLRALMPETVELI 70 Query: 65 HGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQ-------GSLLQAKARGA 117 GPGCPVCV P I+ +++A TFG +V + GSL A+A GA Sbjct: 71 PGPGCPVCVTPSSDIENVIKLA-MEGYTVYTFG-MFQVTTVKHYKKDEVGSLAAARALGA 128 Query: 118 DVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHIT 177 DVRIVYS +DA++ A+++ + VFFG+GFETT P+ A+ ++ + +N F+ Sbjct: 129 DVRIVYSFVDAIEDAKKS-GKPSVFFGIGFETTTPSYAVLFEK--EKVPKNLLFYSSLKL 185 Query: 178 LIPTLRSLLEQPD----NGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLL 233 P + + + PGHVS +IG +++F ++ P VV GFEP+D+L Sbjct: 186 TAPAAEFAVRLHKSKGLVPVSGVIGPGHVSSIIGAISWDFFPREYKIPAVVTGFEPIDVL 245 Query: 234 QGVVMLVQQKIAAHSKVEN-QYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSG 292 GV+ ++Q + N +Y+RVV GN+ AQ I VF + D+ WRG+G I SG Sbjct: 246 AGVLKILQDLHSGDITYTNLEYKRVVKYQGNVYAQVEINKVFKLV-DAIWRGIGSIPKSG 304 Query: 293 VHLTPDYQRFDAEAHFRPA--PQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFG 350 + L +Y ++A P P RC EV G P CP+F C P +G Sbjct: 305 LDLREEYSMYNAREQLGIKEKPWDYDLPPGCRCNEVTLGIAYPTDCPMFMKACTPARPWG 364 Query: 351 ALMVSSEGACAAWYQYRQQE 370 MVS EGACA W ++ E Sbjct: 365 PCMVSMEGACAVWARFGSTE 384 >UniRef50_A1S0N0 Hydrogenase formation HypD protein n=6 Tax=Thermoprotei RepID=A1S0N0_THEPD Length = 411 Score = 446 bits (1148), Expect = e-124, Method: Composition-based stats. Identities = 127/382 (33%), Positives = 182/382 (47%), Gaps = 23/382 (6%) Query: 5 DEYRAPE-QVMQLIEHLRERASHLSYTAERPLRI--MEVCGGHTHAIFKFGLDQLLPENV 61 +R+ L ++ + + R RI M+ CG H I FGL L+PE V Sbjct: 17 KAFRSNARLAGALRGYIARKFEEIRAREGRDYRIKIMDFCGTHEWTIVHFGLRSLMPEGV 76 Query: 62 EFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQ-----GSLLQAKARG 116 E + GPGCPVCV P I+ +E++ V T+GD ++ SL +A+A G Sbjct: 77 ELVAGPGCPVCVTPSWYIERAIELSL-SGVTVYTYGDTFKLRAVNPVDGVSSLEEARAAG 135 Query: 117 ADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHI 176 VR+V S +DA++ A + + VF G+GFET P A + +N Sbjct: 136 GRVRLVVSLVDAVRDASRHGG-ESVFLGIGFETVAPGYARAVVSG--SLPENLKLMSLVK 192 Query: 177 TLIPTLRS---LLEQP--DNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLD 231 P + +L + + +APGHVS V G A+ +A F P+VV+GFEP+D Sbjct: 193 LTPPAMFYSLDILRDKPTEPPVMGVIAPGHVSTVTGAKAWEPVAEQFQVPVVVSGFEPID 252 Query: 232 LLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESS 291 +L G+ +++Q V+ +Y R V G+L AQ AI + F D+ WRG+G + S Sbjct: 253 VLMGIAEIMRQLARGEYGVKVEYTRAVTWEGDLEAQAAIHEAFEAVDDA-WRGIGFLPLS 311 Query: 292 GVHLTPDYQRFDAEAHFRPAPQQVCD-----DPRARCGEVLTGKCKPHQCPLFGNTCNPQ 346 G+ L Y R DA HF P RC EV GK KP CP+F C P+ Sbjct: 312 GLRLREKYGRLDALRHFGIEELTPEKWRKDTPPGCRCAEVTLGKAKPTDCPMFMKKCTPE 371 Query: 347 TAFGALMVSSEGACAAWYQYRQ 368 +G MVS EG CA W ++ Sbjct: 372 KPYGPCMVSLEGTCAVWARFGG 393 >UniRef50_C9LR02 Hydrogenase expression/formation protein HypD n=1 Tax=Dialister invisus DSM 15470 RepID=C9LR02_9FIRM Length = 349 Score = 446 bits (1147), Expect = e-124, Method: Composition-based stats. Identities = 134/342 (39%), Positives = 177/342 (51%), Gaps = 6/342 (1%) Query: 21 RERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRID 80 E L RP++IMEVCG HT A++K GL Q+L ++ + GPGCPVCV P ID Sbjct: 4 NEIIRWLREYDGRPVKIMEVCGTHTSALYKTGLRQILSPKIQLLSGPGCPVCVTPTAYID 63 Query: 81 TCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKV 140 VEI+ FGD + VPG + SL +A+ RGA V Y+P DALK A+E Sbjct: 64 KLVEISFRGGHRVLAFGDMLAVPGTEMSLAEARDRGASVDFFYNPEDALKKAEEEKETIF 123 Query: 141 VFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPG 200 V +GFETT P A +++A R + N T+ TL L ID FL PG Sbjct: 124 VLAAVGFETTAPVWATVVKEADERHISNLKLLTALKTMPETLGELCTAG--NIDGFLCPG 181 Query: 201 HVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPD 260 HV+++ G + Y ++ + +P+V+ GF LL V LV N Y VV + Sbjct: 182 HVAVITGAERYRALSETYGKPMVIGGFTADLLLSAVARLVLAVNKGQGGFWNDYGSVVTE 241 Query: 261 AGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPR 320 GN+ A + + F GD+ WRGLGV+++SGV+L Y +DA + Sbjct: 242 KGNVKAWERVGAFFE-KGDALWRGLGVVKNSGVYLKEKYHLYDAGSRGLVED---HIPAG 297 Query: 321 ARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAA 362 RCG +L GK P CP FG TC P GA MVSSEGAC Sbjct: 298 CRCGNILLGKNMPKDCPHFGRTCTPSHPVGACMVSSEGACCI 339 >UniRef50_Q6API1 Related to hydrogenase isoenzymes formation protein n=1 Tax=Desulfotalea psychrophila RepID=Q6API1_DESPS Length = 368 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 120/372 (32%), Positives = 186/372 (50%), Gaps = 12/372 (3%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M +++ +PE L +P+R+M VCG H AI ++G+ + LP+ Sbjct: 1 MDVINQLPSPE----------ALLEELHRVVSKPIRLMVVCGTHNRAILRYGIREELPDF 50 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGAD-V 119 +E + GPGC VCV+P G +D V++A P+VI T D ++V G + SL G V Sbjct: 51 IELVAGPGCSVCVMPTGHVDAFVKVARQPDVITATCEDLLKVRGSKESLADVLNEGVHRV 110 Query: 120 RIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLI 179 I+ SP AL+LA + VV+ +GFE T P+ A T+ +A V NF L Sbjct: 111 EIISSPRQALELAYVEEDKIVVYPAVGFEATAPSIAETILEAAQNGVGNFCVIPSIRLLP 170 Query: 180 PTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVML 239 PT+ +LL P I L H++ + T+AY +A +AGFE ++LQG++ + Sbjct: 171 PTIDALLLDPQLSIQGLLCSDHINTISDTEAYADLARKHSLSCCIAGFEKAEILQGILSM 230 Query: 240 VQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDY 299 V+Q S V+ V A++ + +VF ++ WRGLG I SG + + Sbjct: 231 VKQIHRGESMVDASGAMVYSMEETARARRVVEEVF-FPTETAWRGLGSIAESGFVIRDEL 289 Query: 300 QRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGA 359 +DA F + D C E+++G+ P CP FG C Q G M+S+EG Sbjct: 290 ALYDATKRFNVRFAEGTDQCMCHCNEIISGRALPPDCPAFGMACTLQNPVGPCMISNEGI 349 Query: 360 CAAWYQYRQQES 371 CAA+++Y+ + S Sbjct: 350 CAAYFKYKLESS 361 >UniRef50_Q8TYR6 Hydrogenase maturation factor n=1 Tax=Methanopyrus kandleri RepID=Q8TYR6_METKA Length = 350 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 131/355 (36%), Positives = 174/355 (49%), Gaps = 11/355 (3%) Query: 14 MQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCV 73 + + L R + T +R + IM VCG H I + GL LLPENV + GPGCPVCV Sbjct: 6 REFVRKLVRRIHKEAETLDRDVTIMHVCGSHERTIVEHGLRSLLPENVRLVCGPGCPVCV 65 Query: 74 LPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQ 133 G + ++ A+ ++ C FGD RVP GSL DVR+V S A ++A Sbjct: 66 TTTGELAAAIK-AAEDGMVVCAFGDVYRVPTPVGSLSSCD---GDVRVVQSVRKAEEIA- 120 Query: 134 ENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGI 193 E+ R V++ +GFETT PTTA L NFY H + P + LLE + + Sbjct: 121 ESEDRDVLYLAVGFETTAPTTAAVLLDD---PPSNFYVLSAHRLIPPAMEWLLESGECRL 177 Query: 194 DAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQ 253 DAF+ PGHVS +IGT Y +A + P VVAGFEP D+L V+ ++ V N+ Sbjct: 178 DAFICPGHVSTIIGTGPYESVARE--LPCVVAGFEPEDVLIAVLACLKMLRRGRVGVTNE 235 Query: 254 YRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQ 313 Y R V D GN +A++ + F D WRG I S + L D DA Sbjct: 236 YLRAVEDRGNPVAKELMERAFE-PEDRPWRGFPTIPESALKLREDLADHDAIEIGIRPDY 294 Query: 314 QVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQ 368 + D C +L G +P CPLFG C P G MVS EG C Y++ Sbjct: 295 TLGHDESCICDRILRGLAEPRDCPLFGTKCTPTDPVGPCMVSEEGPCFIEYRFGG 349 >UniRef50_A4XJQ2 Hydrogenase formation HypD protein n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XJQ2_CALS8 Length = 348 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 131/355 (36%), Positives = 205/355 (57%), Gaps = 11/355 (3%) Query: 14 MQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCV 73 MQ E + E +++ R L+I+EVCG HT +I+K G + ++FI GPGCPVCV Sbjct: 1 MQTAELIWEIKNNI-EKIGRSLKIIEVCGTHTVSIYKNGFPAVFEGYIDFISGPGCPVCV 59 Query: 74 LPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALKLAQ 133 G ID VE++ E TFGD ++VPG SL QA+A G ++++YSP+DA++ + Sbjct: 60 THEGYIDRLVELS--SEWTIYTFGDLLKVPGSSKSLSQARANGGKIKVMYSPVDAVEHLE 117 Query: 134 ENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGI 193 N KV+F +GFETT P A++L++ + ++N F C+ T+ L+S L+ + Sbjct: 118 NN--EKVIFAAVGFETTAPAFALSLEKVIEKGLKNVKFACELKTIDEPLKSFLQNH-IRV 174 Query: 194 DAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQ 253 D + PGHV+ VIG D + F F V++GFE D+L ++ + Q ++ V+N+ Sbjct: 175 DGIILPGHVATVIGVDGFKF-VERFKVASVISGFEGYDILLSLLSITQDILSEDFTVKNE 233 Query: 254 YRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQ 313 Y+RVV GN++A+ I F + +RGLG+I G+ + ++ + + + Q Sbjct: 234 YKRVVKKEGNVIAKGYIEKYFE-RTSAFFRGLGLIPGGGLKIKDEFSEYSIDISYDHTKQ 292 Query: 314 QVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQ 368 + D RC +VLTGK KP +CPLF C P + GA MVS EG+C A+++Y + Sbjct: 293 K---DSLCRCADVLTGKIKPFECPLFEKVCTPISPKGACMVSQEGSCNAYFRYGK 344 >UniRef50_B4S326 Hydrogenase formation HypD protein n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4S326_ALTMD Length = 377 Score = 409 bits (1052), Expect = e-113, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 180/367 (49%), Gaps = 16/367 (4%) Query: 14 MQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCV 73 M +E L + S +P RI+ VCGGH AI + G L N+ I GPGCPVC+ Sbjct: 1 MYSVESLLRDIKNTS--LSKPFRILNVCGGHERAITRAGFRTLFQHNIHLIPGPGCPVCI 58 Query: 74 LPMGRIDTCVEIASHPEVIFCTFGDAMRVP-----GKQGSLLQAKARGADVRIVYSPMDA 128 P I + +A + V+ +FGD +RVP G SL+ AK +GAD+R + SP +A Sbjct: 59 CPEEDIAYAIHLAINENVVIVSFGDMLRVPVEHEMGGCSSLIDAKNQGADIRPISSPQEA 118 Query: 129 LKLAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQ 188 + +A E P + +VFF +GFETTM A TL NF P + +LE Sbjct: 119 VSIALEEPRKVIVFFAVGFETTMAPIAATLLNDLPN---NFKVLLSGRLTWPAVAHVLES 175 Query: 189 PDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHS 248 N DA +APGHV+ ++G++ + F + P+ +AGF P LL + L+ Sbjct: 176 QPNTFDALIAPGHVATIMGSEEWQFAIDHHNLPVSIAGFHPESLLLSLQTLLGNCSNKVV 235 Query: 249 KVENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHF 308 + N+Y VV GN A+ I F + D+ WRG+GVI SG DA + Sbjct: 236 TLSNRYPEVVKQNGNAAAKAIINKAFTIV-DAHWRGIGVIPGSGFSFASRLSHLDATNDY 294 Query: 309 RPAP-----QQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAW 363 P Q + + C +V+ GK P CP FG C P + GA MVS EGAC W Sbjct: 295 APVDFPSQCAQNVPETTSPCEKVILGKMAPDACPFFGQECKPASPKGACMVSDEGACRIW 354 Query: 364 YQYRQQE 370 Y ++ Sbjct: 355 YSSGERS 361 >UniRef50_B9MR89 Hydrogenase formation HypD protein n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MR89_ANATD Length = 351 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 135/359 (37%), Positives = 210/359 (58%), Gaps = 14/359 (3%) Query: 14 MQLIEH---LRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCP 70 MQ +E + + R LRI+EVCG HT +I++ G L ++FI GPGCP Sbjct: 1 MQTLEKGNPIINTIKNNIEKIGRQLRIIEVCGTHTVSIYRNGFHSLFKGYIDFISGPGCP 60 Query: 71 VCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALK 130 VCV G ID +E+A I+ TFGD M+VPGK SL +AKA+G ++I+YSP+DA++ Sbjct: 61 VCVTHEGYIDNLIELAKMNYTIY-TFGDLMKVPGKSMSLAEAKAKGGKIKIMYSPVDAVE 119 Query: 131 -LAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQP 189 +A+ + + +GFETT+P A++L++ +D++N F C+ T+ L+ LL+ Sbjct: 120 NIAE---DEEAIIAAVGFETTVPAFALSLEKVLEKDLKNVKFACELKTIDQPLKVLLKDH 176 Query: 190 DNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSK 249 +D + PGHV+ ++G D + F +F P V++GFE D+L ++ L Q + Sbjct: 177 -IKVDGLILPGHVATILGVDGFKF-VEEFEIPSVISGFEKYDILLSLLSLTQSILDNDFT 234 Query: 250 VENQYRRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFR 309 V+N+Y+R+V GN +A++ I F D+ +RGLG+IE G+ L +Y F + + Sbjct: 235 VKNEYKRIVKKEGNTVAKRYIERFFE-RTDAYFRGLGLIEGGGLRLKSEYSSFSVQLKY- 292 Query: 310 PAPQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQ 368 + + RC +VLTGK KP +CPLF C PQT GA MVS EG+C A++++ + Sbjct: 293 --DYESFSNSACRCADVLTGKLKPFECPLFEKVCTPQTPKGACMVSQEGSCNAYFRFGK 349 >UniRef50_A0L606 Hydrogenase formation HypD protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L606_MAGSM Length = 366 Score = 406 bits (1044), Expect = e-112, Method: Composition-based stats. Identities = 105/360 (29%), Positives = 165/360 (45%), Gaps = 14/360 (3%) Query: 21 RERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRID 80 ++ + P+++M +CGG + Q L V + GPGCPVCV P I Sbjct: 8 QKLLALTRLQVSEPIKVMNLCGGFARFWAESDWHQSLSRVVHIMPGPGCPVCVCPEAEIR 67 Query: 81 TCVEIASHPEVIFCTFGDAMRVPGKQG-----SLLQAKARGADVRIVYSPMDALKLAQEN 135 + +A +VI FGD + VP G +L A+ GADV V +P +A++LA + Sbjct: 68 AAMHLAVREDVILAAFGDMLSVPISYGAAGYATLDGARQDGADVVAVANPHEAVELALRH 127 Query: 136 PTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNG-ID 194 PTR+VVFF GFET A Q A NF P + ++L Q + Sbjct: 128 PTREVVFFASGFETVSAPLAA---QFLAGVPDNFSILNALRLSWPVVDTMLSQHERRPFK 184 Query: 195 AFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQY 254 A +APGHV+ ++G++ + F + + P+ ++GF L + +V+Q ++ +++ Q Sbjct: 185 AIIAPGHVAAIVGSECWRFAVTQYGIPVSISGFSDRSFLASLDTVVRQVVSGKPQLDIQE 244 Query: 255 RRVVPDAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHF----RP 310 + GNL A + +VF V WRG+G + SG L + DA F Sbjct: 245 PYRINPRGNLYALTCVNNVFDVQ-SVHWRGIGRVPDSGYALREAWHHRDARKRFHALATF 303 Query: 311 APQQVCDDPRARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQE 370 P+ C ++ GK PH C + + C P G M S +GAC ++ + E Sbjct: 304 QPEMGDMPNDCLCASIVMGKQSPHDCLRYAHDCQPDNPVGPCMASVDGACRIMWERQHSE 363 >UniRef50_B9Y0D1 Putative uncharacterized protein n=1 Tax=Helicobacter pylori B128 RepID=B9Y0D1_HELPY Length = 221 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 72/195 (36%), Positives = 115/195 (58%), Gaps = 2/195 (1%) Query: 155 AITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFI 214 A L AK ++N +F HI + P++ ++L+ P I+A LAP HVS++ G Y+ + Sbjct: 3 ASVLLNAKKEKLKNLFFHINHILVPPSVSAILKDPACQINALLAPSHVSVISGAQIYSPL 62 Query: 215 ASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVF 274 F P++V+GFEP+D+L+ V+ML++Q + +K+E QY+R V GN+ AQ + Sbjct: 63 VDRFKLPIIVSGFEPVDILESVLMLLKQALNKEAKLEIQYKRAVSFEGNVKAQALVNACM 122 Query: 275 CVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFR--PAPQQVCDDPRARCGEVLTGKCK 332 V + EWRGLG I+ S + L + +DAE F+ + + + ++ +CGE+L G K Sbjct: 123 EVRENFEWRGLGNIKRSALKLKEAFASYDAEKVFKEYLSHKIIKENKACKCGEILKGIAK 182 Query: 333 PHQCPLFGNTCNPQT 347 P C LF TC P+T Sbjct: 183 PLDCSLFATTCTPKT 197 >UniRef50_UPI00019137D4 hydrogenase expression/formation protein HypD n=5 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI00019137D4 Length = 114 Score = 178 bits (453), Expect = 3e-43, Method: Composition-based stats. Identities = 106/113 (93%), Positives = 110/113 (97%) Query: 260 DAGNLLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDP 319 DAGN+LAQQAIADVFCVNGDSEWRGLGVIESSGVHLTP+YQRFDAEAHFRPAPQQV DDP Sbjct: 1 DAGNMLAQQAIADVFCVNGDSEWRGLGVIESSGVHLTPEYQRFDAEAHFRPAPQQVYDDP 60 Query: 320 RARCGEVLTGKCKPHQCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQESE 372 RARCGEVLTG+CKPHQCPLFG TCNP+TAFGALMVSSEGACAAWYQYRQQE E Sbjct: 61 RARCGEVLTGRCKPHQCPLFGKTCNPETAFGALMVSSEGACAAWYQYRQQECE 113 >UniRef50_Q9REL6 Hydrogenase maturating protein HypD (Fragment) n=1 Tax=Rhodobacter sphaeroides RepID=Q9REL6_RHOSH Length = 123 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 65/123 (52%), Positives = 85/123 (69%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPEN 60 M+F E+R P L+ + RA + T RPL IME+CGGHTHAIF++GLD+L+ E Sbjct: 1 MKFASEFRDPALARSLLAAIAARADEMGATRARPLHIMEICGGHTHAIFRYGLDRLVHEG 60 Query: 61 VEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVR 120 +EFIHGPGCPVCVLP+ + + I P +I TF + +PG +GSLLQAKARGAD+R Sbjct: 61 IEFIHGPGCPVCVLPIPPLHQSIPIPHPPHLILTTFPHPIPLPGARGSLLQAKARGADIR 120 Query: 121 IVY 123 +VY Sbjct: 121 MVY 123 >UniRef50_Q111Q4 Hydrogenase isoenzyme formation protein HypD n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q111Q4_TRIEI Length = 93 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 38 MEVCGGHTHAI-FKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTF 96 M VC ++ I K+ L+ + +EF+ G G L RID + ++ E+IF T Sbjct: 1 MPVCAPNSLVIVAKYNLNTIECGYLEFLQGYGEASWSLAPQRIDHAIALSQKTEIIFTTC 60 Query: 97 GDAMRVPGKQGSLLQAKARGADVRIVYSPMDAL 129 A G Q +L +AK +GAD++I+ SP AL Sbjct: 61 EAANSYCGSQQNLAEAKTQGADIQIISSPQQAL 93 >UniRef50_UPI0001699500 Hydrogenase formation HypD protein n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699500 Length = 121 Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats. Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 6/84 (7%) Query: 10 PEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGHTHAIFKFGLDQLLPENVEFIHGPGC 69 P Q +E +R + +RIM VCGGH +I + GL LP N+E I GPGC Sbjct: 14 PITAKQWLEQIRTL------PLPKRVRIMNVCGGHERSITQAGLRAALPRNIELIPGPGC 67 Query: 70 PVCVLPMGRIDTCVEIASHPEVIF 93 PVCV P + +++A + VI Sbjct: 68 PVCVCPEEDVYQAIQLALNESVIL 91 >UniRef50_Q1AUA4 Hydrogenase maturation factor-like protein n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AUA4_RUBXD Length = 134 Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 32/77 (41%), Positives = 45/77 (58%) Query: 205 VIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNL 264 +IG Y F+ +D+ +P VVAGFEPLD+LQ ++M +VENQ RVV GNL Sbjct: 1 MIGYRPYEFMPADYGKPCVVAGFEPLDILQAILMNHAPLAEGRCEVENQDSRVVSWEGNL 60 Query: 265 LAQQAIADVFCVNGDSE 281 A +++A+VF Sbjct: 61 SALRSMAEVFEHREQGH 77 >UniRef50_Q111Q5 Hydrogenase formation HypD protein n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q111Q5_TRIEI Length = 62 Score = 77.5 bits (190), Expect = 7e-13, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 180 PTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDFHRPLVVAGFEPLDLLQGVVML 239 PTL+++++ ID F+AP + + Y F+ + +PLVVA P+ +L+ +ML Sbjct: 2 PTLKAIMDSRILPIDGFIAPAQLIATFELEPYQFLVGYYCKPLVVAEVTPISMLKAKLML 61 Query: 240 V 240 + Sbjct: 62 L 62 >UniRef50_Q9ZKV1 Putative n=2 Tax=Helicobacter pylori RepID=Q9ZKV1_HELPJ Length = 136 Score = 59.8 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/27 (55%), Positives = 17/27 (62%) Query: 332 KPHQCPLFGNTCNPQTAFGALMVSSEG 358 KP C LF TC PQ G+ MVSS+G Sbjct: 18 KPLDCSLFATTCTPQNPIGSCMVSSQG 44 Score = 59.8 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 15/27 (55%), Positives = 17/27 (62%) Query: 332 KPHQCPLFGNTCNPQTAFGALMVSSEG 358 KP C LF TC PQ G+ MVSS+G Sbjct: 63 KPLDCSLFATTCTPQNPIGSCMVSSQG 89 >UniRef50_UPI000190C3BE hydrogenase expression/formation protein HypD n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. 404ty RepID=UPI000190C3BE Length = 63 Score = 55.6 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 39/42 (92%), Positives = 40/42 (95%) Query: 1 MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCG 42 MRFVDEYRAPEQVMQLIEHLRERA+ L YTAERPLRIMEVCG Sbjct: 1 MRFVDEYRAPEQVMQLIEHLRERAALLPYTAERPLRIMEVCG 42 >UniRef50_A9G700 Beta-glucosidase n=3 Tax=cellular organisms RepID=A9G700_SORC5 Length = 728 Score = 45.9 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%) Query: 52 GLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQ 111 G+ +L P E ++ GC V I VE+A + + GD + + G+ S Sbjct: 436 GIRELAPPGCEVVYAAGCSVLSEDESDIPAAVELARGADAVVLVLGDRIELIGETKSTAT 495 Query: 112 AKARGA 117 + G Sbjct: 496 LELMGG 501 >UniRef50_UPI0001AF6C89 hypothetical protein MkanA1_17326 n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF6C89 Length = 601 Score = 44.4 bits (104), Expect = 0.006, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 64/198 (32%), Gaps = 46/198 (23%) Query: 71 VCVLPMGRIDTCVEIASHPEVIFCTFGDAMRVPGKQGSLLQAKARGADVRIVYSPMDALK 130 V VL R+D + + + V GD + V G SL +A + DV +V +P + Sbjct: 347 VVVLAAHRLDHEIHLPAKLNV-----GDTLLVEGSWDSL-EATSANPDVLLVDAPSEV-- 398 Query: 131 LAQENPTRKVVFFGLGFETTMPTTAITLQQAKARDVQNFYFFCQHITLIPTLRSLLEQPD 190 R+ V G G + AI + L P + +L Sbjct: 399 ------RRQTVKLGRG---SGRAIAIAVTMVA---------LMATALLTPAVAGILAAIM 440 Query: 191 NGIDAFLAP---------GHVSMVIGTDAYNFIASDFHRPLVVAG--------FEPLDLL 233 + +AP G V ++ G + V+AG P +L Sbjct: 441 VILTGVIAPEDAYRRVQWGTVFLIAGILPMSTAVEQSGLADVIAGTIVDAVGRLGPAAIL 500 Query: 234 QGVV---MLVQQKIAAHS 248 + ML+ Q + Sbjct: 501 AVIFVVGMLLTQVLTGIP 518 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.164 0.565 Lambda K H 0.267 0.0504 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,956,890,716 Number of Sequences: 3077464 Number of extensions: 158842303 Number of successful extensions: 383954 Number of sequences better than 1.0e-01: 67 Number of HSP's better than 0.1 without gapping: 195 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 383182 Number of HSP's gapped (non-prelim): 212 length of query: 373 length of database: 1,040,396,356 effective HSP length: 130 effective length of query: 243 effective length of database: 640,326,036 effective search space: 155599226748 effective search space used: 155599226748 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.7 bits) S2: 94 (40.5 bits)