Phyre 2 Results for P69822

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Email | l.a.kelley@imperial.ac.uk
Description | P69822
Date | Thu Jan 5 12:12:07 GMT 2012
Unique Job ID | 1423f8f72386ca20

Summary |

Top model
Image coloured by rainbow N → C terminus
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Model (left) based on template c3czcA_
Top template information
PDB header:transferase Chain: A: PDB Molecule:rmpb; PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans
Confidence and coverage
Confidence: | 99.9% | Coverage: | 90%
91 residues ( 90% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | T | V | R | I | L | A | V | C | G | N | G | Q | G | S | S | M | I | M | K | M | K | V | D | Q | F | L | T | Q | S | N | I | D | H | T | V | N | S | C | A | V | G | E | Y | K | S | E | L | S | G | A | D | I | I | I | A | S | T | H | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | .
Sequence |  | A | G | E | I | T | V | T | G | N | K | Y | V | V | G | V | R | N | M | L | S | P | A | D | F | G | P | K | L | L | E | V | I | K | E | H | F | P | Q | D | V | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3czcA_ |

### PDB 3czc chain A

Region: 3 - 93
Aligned: 91
Modelled: 91
Confidence: 99.9%
Identity: 38%
PDB header:transferase
Chain: A: PDB Molecule:rmpb;
PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans

Phyre2
2 |
| c1tvmA_ |

### PDB 1tvm chain A

Region: 2 - 93
Aligned: 92
Modelled: 92
Confidence: 99.8%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:pts system, galactitol-specific iib component;
PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system

Phyre2
3 |
| d1vkra_ |

### PDB 1vkr chain A

Region: 4 - 97
Aligned: 91
Modelled: 94
Confidence: 99.7%
Identity: 13%
Fold: Phosphotyrosine protein phosphatases I-like
Superfamily: PTS system IIB component-like
Family: PTS system, Lactose/Cellobiose specific IIB subunit

Phyre2
4 |
| c1vkrA_ |

### PDB 1vkr chain A

Region: 4 - 97
Aligned: 91
Modelled: 94
Confidence: 99.7%
Identity: 13%
PDB header:transferase
Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components;
PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii

Phyre2
5 |
| d1iiba_ |

### PDB 1iib chain A

Region: 4 - 95
Aligned: 91
Modelled: 92
Confidence: 99.2%
Identity: 16%
Fold: Phosphotyrosine protein phosphatases I-like
Superfamily: PTS system IIB component-like
Family: PTS system, Lactose/Cellobiose specific IIB subunit

Phyre2
6 |
| c2l2qA_ |

### PDB 2l2q chain A

Region: 2 - 94
Aligned: 92
Modelled: 93
Confidence: 99.2%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela);
PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi

Phyre2
7 |
| c3sqnB_ |

### PDB 3sqn chain B

Region: 2 - 96
Aligned: 86
Modelled: 93
Confidence: 99.1%
Identity: 12%
PDB header:transcription regulator
Chain: B: PDB Molecule:conserved domain protein;
PDBTitle: putative mga family transcriptional regulator from enterococcus2 faecalis

Phyre2
8 |
| c3nbmA_ |

### PDB 3nbm chain A

Region: 2 - 90
Aligned: 88
Modelled: 89
Confidence: 99.1%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:pts system, lactose-specific iibc components;
PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae.

Phyre2
9 |
| c2kyrA_ |

### PDB 2kyr chain A

Region: 1 - 94
Aligned: 94
Modelled: 94
Confidence: 97.9%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1;
PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544

Phyre2
10 |
| d2r48a1 |

### PDB 2r48 chain A domain 1

Region: 5 - 97
Aligned: 93
Modelled: 93
Confidence: 97.2%
Identity: 13%
Fold: Phosphotyrosine protein phosphatases I-like
Superfamily: PTS system IIB component-like
Family: PTS system, Fructose specific IIB subunit-like

Phyre2
11 |
| d2r4qa1 |

### PDB 2r4q chain A domain 1

Region: 5 - 97
Aligned: 91
Modelled: 93
Confidence: 95.8%
Identity: 15%
Fold: Phosphotyrosine protein phosphatases I-like
Superfamily: PTS system IIB component-like
Family: PTS system, Fructose specific IIB subunit-like

Phyre2
12 |
| d1dg9a_ |

### PDB 1dg9 chain A

Region: 1 - 40
Aligned: 40
Modelled: 40
Confidence: 94.4%
Identity: 23%
Fold: Phosphotyrosine protein phosphatases I-like
Superfamily: Phosphotyrosine protein phosphatases I
Family: Low-molecular-weight phosphotyrosine protein phosphatases

Phyre2
13 |
| d1ycga1 |

### PDB 1ycg chain A domain 1

Region: 4 - 60
Aligned: 57
Modelled: 57
Confidence: 94.4%
Identity: 9%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Flavodoxin-related

Phyre2
14 |
| c2q5cA_ |

### PDB 2q5c chain A

Region: 1 - 95
Aligned: 88
Modelled: 95
Confidence: 93.7%
Identity: 9%
PDB header:transcription
Chain: A: PDB Molecule:ntrc family transcriptional regulator;
PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum

Phyre2
15 |
| c3jviA_ |

### PDB 3jvi chain A

Region: 2 - 40
Aligned: 39
Modelled: 39
Confidence: 93.5%
Identity: 10%
PDB header:hydrolase
Chain: A: PDB Molecule:protein tyrosine phosphatase;
PDBTitle: product state mimic crystal structure of protein tyrosine phosphatase2 from entamoeba histolytica

Phyre2
16 |
| d1vmea1 |

### PDB 1vme chain A domain 1

Region: 4 - 60
Aligned: 57
Modelled: 57
Confidence: 93.3%
Identity: 14%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Flavodoxin-related

Phyre2
17 |
| d1e5da1 |

### PDB 1e5d chain A domain 1

Region: 4 - 60
Aligned: 57
Modelled: 57
Confidence: 92.9%
Identity: 16%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Flavodoxin-related

Phyre2
18 |
| c1zggA_ |

### PDB 1zgg chain A

Region: 3 - 41
Aligned: 39
Modelled: 39
Confidence: 92.8%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:putative low molecular weight protein-tyrosine-
PDBTitle: solution structure of a low molecular weight protein2 tyrosine phosphatase from bacillus subtilis

Phyre2
19 |
| d1ydga_ |

### PDB 1ydg chain A

Region: 3 - 60
Aligned: 58
Modelled: 58
Confidence: 92.4%
Identity: 21%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: WrbA-like

Phyre2
20 |
| d1f4pa_ |

### PDB 1f4p chain A

Region: 4 - 59
Aligned: 56
Modelled: 56
Confidence: 92.2%
Identity: 16%
Fold: Flavodoxin-like
Superfamily: Flavoproteins
Family: Flavodoxin-related

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3czcA_ |
|  | 99.9 | 38 | PDB header:transferase Chain: A: PDB Molecule:rmpb; PDBTitle: the crystal structure of a putative pts iib(ptxb) from2 streptococcus mutans
2 | c1tvmA_ |
|  | 99.8 | 14 | PDB header:transferase Chain: A: PDB Molecule:pts system, galactitol-specific iib component; PDBTitle: nmr structure of enzyme gatb of the galactitol-specific2 phosphoenolpyruvate-dependent phosphotransferase system
3 | d1vkra_ |
|  | 99.7 | 13 | Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit
4 | c1vkrA_ |
|  | 99.7 | 13 | PDB header:transferase Chain: A: PDB Molecule:mannitol-specific pts system enzyme iiabc components; PDBTitle: structure of iib domain of the mannitol-specific permease enzyme ii
5 | d1iiba_ |
|  | 99.2 | 16 | Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Lactose/Cellobiose specific IIB subunit
6 | c2l2qA_ |
|  | 99.2 | 17 | PDB header:transferase Chain: A: PDB Molecule:pts system, cellobiose-specific iib component (cela); PDBTitle: solution structure of cellobiose-specific phosphotransferase iib2 component protein from borrelia burgdorferi
7 | c3sqnB_ |
|  | 99.1 | 12 | PDB header:transcription regulator Chain: B: PDB Molecule:conserved domain protein; PDBTitle: putative mga family transcriptional regulator from enterococcus2 faecalis
8 | c3nbmA_ |
|  | 99.1 | 19 | PDB header:transferase Chain: A: PDB Molecule:pts system, lactose-specific iibc components; PDBTitle: the lactose-specific iib component domain structure of the2 phosphoenolpyruvate:carbohydrate phosphotransferase system (pts) from3 streptococcus pneumoniae.
9 | c2kyrA_ |
|  | 97.9 | 15 | PDB header:transferase Chain: A: PDB Molecule:fructose-like phosphotransferase enzyme iib component 1; PDBTitle: solution structure of enzyme iib subunit of pts system from2 escherichia coli k12. northeast structural genomics consortium target3 er315/ontario center for structural proteomics target ec0544
10 | d2r48a1 |
|  | 97.2 | 13 | Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like
11 | d2r4qa1 |
|  | 95.8 | 15 | Fold:Phosphotyrosine protein phosphatases I-like Superfamily:PTS system IIB component-like Family:PTS system, Fructose specific IIB subunit-like
12 | d1dg9a_ |
|  | 94.4 | 23 | Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases
13 | d1ycga1 |
|  | 94.4 | 9 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
14 | c2q5cA_ |
|  | 93.7 | 9 | PDB header:transcription Chain: A: PDB Molecule:ntrc family transcriptional regulator; PDBTitle: crystal structure of ntrc family transcriptional regulator from2 clostridium acetobutylicum
15 | c3jviA_ |
|  | 93.5 | 10 | PDB header:hydrolase Chain: A: PDB Molecule:protein tyrosine phosphatase; PDBTitle: product state mimic crystal structure of protein tyrosine phosphatase2 from entamoeba histolytica
16 | d1vmea1 |
|  | 93.3 | 14 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
17 | d1e5da1 |
|  | 92.9 | 16 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
18 | c1zggA_ |
|  | 92.8 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:putative low molecular weight protein-tyrosine- PDBTitle: solution structure of a low molecular weight protein2 tyrosine phosphatase from bacillus subtilis
19 | d1ydga_ |
|  | 92.4 | 21 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like
20 | d1f4pa_ |
|  | 92.2 | 16 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
21 | c3f6sI_ |
| not modelled | 92.0 | 16 | PDB header:electron transport Chain: I: PDB Molecule:flavodoxin; PDBTitle: desulfovibrio desulfuricans (atcc 29577) oxidized flavodoxin2 alternate conformers
22 | c1u2pA_ |
| not modelled | 91.5 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:low molecular weight protein-tyrosine- PDBTitle: crystal structure of mycobacterium tuberculosis low2 molecular protein tyrosine phosphatase (mptpa) at 1.9a3 resolution
23 | c3nhzA_ |
| not modelled | 91.2 | 14 | PDB header:dna binding protein Chain: A: PDB Molecule:two component system transcriptional regulator mtra; PDBTitle: structure of n-terminal domain of mtra
24 | c3rofA_ |
| not modelled | 91.1 | 28 | PDB header:hydrolase Chain: A: PDB Molecule:low molecular weight protein-tyrosine-phosphatase ptpa; PDBTitle: crystal structure of the s. aureus protein tyrosine phosphatase ptpa
25 | d1tlla2 |
| not modelled | 90.7 | 11 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like
26 | c2cwdA_ |
| not modelled | 90.6 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:low molecular weight phosphotyrosine protein phosphatase; PDBTitle: crystal structure of tt1001 protein from thermus thermophilus hb8
27 | d1d1qa_ |
| not modelled | 90.2 | 8 | Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases
28 | d2arka1 |
| not modelled | 89.8 | 11 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like
29 | c1vmeB_ |
| not modelled | 89.4 | 13 | PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution
30 | d5pnta_ |
| not modelled | 88.8 | 23 | Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases
31 | c3hlyA_ |
| not modelled | 88.4 | 16 | PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d.
32 | c2gi4A_ |
| not modelled | 88.3 | 21 | PDB header:hydrolase Chain: A: PDB Molecule:possible phosphotyrosine protein phosphatase; PDBTitle: solution structure of the low molecular weight protein2 tyrosine phosphatase from campylobacter jejuni.
33 | c2ohiB_ |
| not modelled | 88.1 | 14 | PDB header:oxidoreductase Chain: B: PDB Molecule:type a flavoprotein fpra; PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state
34 | c1bvyF_ |
| not modelled | 86.7 | 9 | PDB header:oxidoreductase Chain: F: PDB Molecule:protein (cytochrome p450 bm-3); PDBTitle: complex of the heme and fmn-binding domains of the2 cytochrome p450(bm-3)
35 | d1bvyf_ |
| not modelled | 86.7 | 9 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
36 | c2hnbA_ |
| not modelled | 86.7 | 13 | PDB header:electron transport Chain: A: PDB Molecule:protein mioc; PDBTitle: solution structure of a bacterial holo-flavodoxin
37 | c3fniA_ |
| not modelled | 86.6 | 11 | PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a
38 | d2a5la1 |
| not modelled | 85.9 | 14 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like
39 | c3d7nA_ |
| not modelled | 85.2 | 18 | PDB header:electron transport Chain: A: PDB Molecule:flavodoxin, wrba-like protein; PDBTitle: the crystal structure of the flavodoxin, wrba-like protein from2 agrobacterium tumefaciens
40 | d5nula_ |
| not modelled | 83.7 | 20 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
41 | c3he8A_ |
| not modelled | 83.4 | 45 | PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase; PDBTitle: structural study of clostridium thermocellum ribose-5-phosphate2 isomerase b
42 | d1b1ca_ |
| not modelled | 83.3 | 8 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like
43 | c3m1pA_ |
| not modelled | 82.8 | 35 | PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of ribose 5-phosphate isomerase type b from trypanosoma2 cruzi, soaked with allose-6-phosphate
44 | c3k7pA_ |
| not modelled | 82.8 | 35 | PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: structure of mutant of ribose 5-phosphate isomerase type b from2 trypanosoma cruzi.
45 | d1ykga1 |
| not modelled | 82.8 | 11 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like
46 | d2vvpa1 |
| not modelled | 82.5 | 30 | Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB
47 | c2wmyH_ |
| not modelled | 82.2 | 24 | PDB header:hydrolase Chain: H: PDB Molecule:putative acid phosphatase wzb; PDBTitle: crystal structure of the tyrosine phosphatase wzb from2 escherichia coli k30 in complex with sulphate.
48 | d1ja1a2 |
| not modelled | 82.1 | 7 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Cytochrome p450 reductase N-terminal domain-like
49 | d1nn4a_ |
| not modelled | 81.8 | 35 | Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB
50 | c3s5pA_ |
| not modelled | 81.7 | 40 | PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase b rpib from giardia2 lamblia
51 | c3edoA_ |
| not modelled | 81.6 | 12 | PDB header:flavoprotein Chain: A: PDB Molecule:putative trp repressor binding protein; PDBTitle: crystal structure of flavoprotein in complex with fmn2 (yp_193882.1) from lactobacillus acidophilus ncfm at 1.203 a resolution
52 | c2fekA_ |
| not modelled | 81.3 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:low molecular weight protein-tyrosine- PDBTitle: structure of a protein tyrosine phosphatase
53 | d1iowa1 |
| not modelled | 80.7 | 20 | Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:D-Alanine ligase N-terminal domain
54 | c3klbA_ |
| not modelled | 78.0 | 15 | PDB header:flavoprotein Chain: A: PDB Molecule:putative flavoprotein; PDBTitle: crystal structure of putative flavoprotein in complex with fmn2 (yp_213683.1) from bacteroides fragilis nctc 9343 at 1.75 a3 resolution
55 | c2an1D_ |
| not modelled | 77.7 | 16 | PDB header:transferase Chain: D: PDB Molecule:putative kinase; PDBTitle: structural genomics, the crystal structure of a putative kinase from2 salmonella typhimurim lt2
56 | c3hr4C_ |
| not modelled | 77.2 | 9 | PDB header:oxidoreductase/metal binding protein Chain: C: PDB Molecule:nitric oxide synthase, inducible; PDBTitle: human inos reductase and calmodulin complex
57 | d1zh2a1 |
| not modelled | 77.1 | 10 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
58 | c3b6iB_ |
| not modelled | 76.2 | 21 | PDB header:flavoprotein Chain: B: PDB Molecule:flavoprotein wrba; PDBTitle: wrba from escherichia coli, native structure
59 | c3orsD_ |
| not modelled | 75.8 | 21 | PDB header:isomerase,biosynthetic protein Chain: D: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 from staphylococcus aureus
60 | c2ppwA_ |
| not modelled | 75.0 | 25 | PDB header:isomerase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of uncharacterized ribose 5-phosphate isomerase2 rpib from streptococcus pneumoniae
61 | d1s8na_ |
| not modelled | 75.0 | 15 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
62 | c3qd5B_ |
| not modelled | 74.2 | 42 | PDB header:isomerase Chain: B: PDB Molecule:putative ribose-5-phosphate isomerase; PDBTitle: crystal structure of a putative ribose-5-phosphate isomerase from2 coccidioides immitis solved by combined iodide ion sad and mr
63 | d2fcra_ |
| not modelled | 74.0 | 11 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
64 | d1czna_ |
| not modelled | 73.8 | 15 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
65 | c3onoA_ |
| not modelled | 73.0 | 31 | PDB header:isomerase Chain: A: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase lacab_rpib from2 vibrio parahaemolyticus
66 | c1e5dA_ |
| not modelled | 69.6 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas
67 | c2l18A_ |
| not modelled | 69.3 | 11 | PDB header:oxidoreductase Chain: A: PDB Molecule:arsenate reductase; PDBTitle: an arsenate reductase in the phosphate binding state
68 | c2q9uB_ |
| not modelled | 69.0 | 7 | PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis
69 | c2jjmH_ |
| not modelled | 68.3 | 18 | PDB header:transferase Chain: H: PDB Molecule:glycosyl transferase, group 1 family protein; PDBTitle: crystal structure of a family gt4 glycosyltransferase from2 bacillus anthracis orf ba1558.
70 | c2wc1A_ |
| not modelled | 68.1 | 14 | PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a
71 | c1kh2D_ |
| not modelled | 67.7 | 17 | PDB header:ligase Chain: D: PDB Molecule:argininosuccinate synthetase; PDBTitle: crystal structure of thermus thermophilus hb82 argininosuccinate synthetase in complex with atp
72 | d2fz5a1 |
| not modelled | 67.5 | 13 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
73 | d1jf8a_ |
| not modelled | 67.2 | 11 | Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases
74 | d1yoba1 |
| not modelled | 65.8 | 13 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
75 | d1otha2 |
| not modelled | 65.3 | 13 | Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase
76 | c3c5yD_ |
| not modelled | 64.4 | 29 | PDB header:isomerase Chain: D: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of a putative ribose 5-phosphate isomerase2 (saro_3514) from novosphingobium aromaticivorans dsm at 1.81 a3 resolution
77 | c3tl6B_ |
| not modelled | 64.3 | 11 | PDB header:transferase Chain: B: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of purine nucleoside phosphorylase from entamoeba2 histolytica
78 | c1ychD_ |
| not modelled | 64.1 | 9 | PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase
79 | d1vhwa_ |
| not modelled | 63.8 | 16 | Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases
80 | d1y1la_ |
| not modelled | 63.8 | 14 | Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases
81 | d1duvg2 |
| not modelled | 61.8 | 15 | Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase
82 | d1mvoa_ |
| not modelled | 61.5 | 16 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
83 | d1o4va_ |
| not modelled | 59.9 | 23 | Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
84 | d2eyqa5 |
| not modelled | 59.6 | 8 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain
85 | c3lcmB_ |
| not modelled | 59.6 | 20 | PDB header:oxidoreductase Chain: B: PDB Molecule:putative oxidoreductase; PDBTitle: crystal structure of smu.1420 from streptococcus mutans ua159
86 | d1vlva2 |
| not modelled | 58.8 | 15 | Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase
87 | d1dxha2 |
| not modelled | 58.2 | 11 | Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase
88 | c3f6cB_ |
| not modelled | 58.2 | 8 | PDB header:dna binding protein Chain: B: PDB Molecule:positive transcription regulator evga; PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli
89 | d1k9sa_ |
| not modelled | 57.0 | 16 | Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases
90 | d2ac7a1 |
| not modelled | 56.9 | 12 | Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases
91 | c2zkiH_ |
| not modelled | 56.6 | 14 | PDB header:transcription Chain: H: PDB Molecule:199aa long hypothetical trp repressor binding PDBTitle: crystal structure of hypothetical trp repressor binding2 protein from sul folobus tokodaii (st0872)
92 | c3lp6D_ |
| not modelled | 56.4 | 26 | PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase catalytic subunit; PDBTitle: crystal structure of rv3275c-e60a from mycobacterium tuberculosis at2 1.7a resolution
93 | c1k97A_ |
| not modelled | 56.3 | 16 | PDB header:ligase Chain: A: PDB Molecule:argininosuccinate synthase; PDBTitle: crystal structure of e. coli argininosuccinate synthetase in complex2 with aspartate and citrulline
94 | d1qcza_ |
| not modelled | 55.8 | 26 | Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
95 | d1jl3a_ |
| not modelled | 54.9 | 18 | Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases
96 | c3t38B_ |
| not modelled | 54.8 | 18 | PDB header:oxidoreductase Chain: B: PDB Molecule:arsenate reductase; PDBTitle: corynebacterium glutamicum thioredoxin-dependent arsenate reductase2 cg_arsc1'
97 | d1rlia_ |
| not modelled | 54.6 | 22 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Hypothetical protein YwqN
98 | d1xhfa1 |
| not modelled | 54.5 | 13 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
99 | d1o1xa_ |
| not modelled | 54.0 | 27 | Fold:Ribose/Galactose isomerase RpiB/AlsB Superfamily:Ribose/Galactose isomerase RpiB/AlsB Family:Ribose/Galactose isomerase RpiB/AlsB
100 | c2fw9A_ |
| not modelled | 52.2 | 28 | PDB header:lyase Chain: A: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: structure of pure (n5-carboxyaminoimidazole ribonucleotide mutase)2 h59f from the acidophilic bacterium acetobacter aceti, at ph 8
101 | d1u11a_ |
| not modelled | 52.1 | 28 | Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
102 | c1nvtA_ |
| not modelled | 51.3 | 20 | PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate 5'-dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase (aroe or2 mj1084) in complex with nadp+
103 | d1odka_ |
| not modelled | 51.2 | 16 | Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases
104 | c1wv9B_ |
| not modelled | 50.6 | 24 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:rhodanese homolog tt1651; PDBTitle: crystal structure of rhodanese homolog tt1651 from an2 extremely thermophilic bacterium thermus thermophilus hb8
105 | c3cfyA_ |
| not modelled | 50.5 | 14 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative luxo repressor protein; PDBTitle: crystal structure of signal receiver domain of putative luxo2 repressor protein from vibrio parahaemolyticus
106 | c3eywA_ |
| not modelled | 47.4 | 18 | PDB header:transport protein Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff
107 | c2w37A_ |
| not modelled | 47.3 | 15 | PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase, catabolic; PDBTitle: crystal structure of the hexameric catabolic ornithine2 transcarbamylase from lactobacillus hilgardii
108 | c1z34A_ |
| not modelled | 46.9 | 16 | PDB header:transferase Chain: A: PDB Molecule:purine nucleoside phosphorylase; PDBTitle: crystal structure of trichomonas vaginalis purine nucleoside2 phosphorylase complexed with 2-fluoro-2'-deoxyadenosine
109 | d1a4ia1 |
| not modelled | 45.1 | 19 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Aminoacid dehydrogenase-like, C-terminal domain
110 | d1nksa_ |
| not modelled | 43.8 | 29 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
111 | c1kgsA_ |
| not modelled | 43.6 | 14 | PDB header:dna binding protein Chain: A: PDB Molecule:dna binding response regulator d; PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima
112 | c3qpbB_ |
| not modelled | 42.8 | 18 | PDB header:transferase Chain: B: PDB Molecule:uridine phosphorylase; PDBTitle: crystal structure of streptococcus pyogenes uridine phosphorylase2 reveals a subclass of the np-i superfamily
113 | c3updA_ |
| not modelled | 42.6 | 17 | PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: 2.9 angstrom crystal structure of ornithine carbamoyltransferase2 (argf) from vibrio vulnificus
114 | d1oboa_ |
| not modelled | 42.5 | 11 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related
115 | c3rggD_ |
| not modelled | 42.4 | 13 | PDB header:lyase Chain: D: PDB Molecule:phosphoribosylaminoimidazole carboxylase, pure protein; PDBTitle: crystal structure of treponema denticola pure bound to air
116 | d1p8aa_ |
| not modelled | 42.3 | 14 | Fold:Phosphotyrosine protein phosphatases I-like Superfamily:Phosphotyrosine protein phosphatases I Family:Low-molecular-weight phosphotyrosine protein phosphatases
117 | d1dl5a1 |
| not modelled | 42.1 | 16 | Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Protein-L-isoaspartyl O-methyltransferase
118 | d1kgsa2 |
| not modelled | 42.1 | 14 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
119 | d1rtta_ |
| not modelled | 42.0 | 14 | Fold:Flavodoxin-like Superfamily:Flavoproteins Family:NADPH-dependent FMN reductase
120 | c2otcA_ |
| not modelled | 41.0 | 15 | PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: ornithine transcarbamoylase complexed with n-2 (phosphonacetyl)-l-ornithine

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction |

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0