Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	I	T	N	P	I	L	T	G	F	N	P	D	P	S	L	C	R	Q	G	E	D	Y	Y	I	A	T	S	T	F	E	W	F	P	G	V	R	I	Y	H	S	R	D	L	K	N	W	S	L	V	S	T	P	L	D	R	V	S	M
Secondary structure
SS confidence
Disorder		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		L	D	M	K	G	N	P	D	S	G	G	I	W	A	P	C	L	S	Y	A	D	G	K	F	W	L	L	Y	T	D	V	K	I	V	D	S	P	W	K	N	G	R	N	F	L	V	T	A	P	S	I	E	G	P	W	S	E	P	I	P
Secondary structure
SS confidence
Disorder		?	?		?																												?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		M	G	N	G	G	F	D	P	S	L	F	H	D	D	D	G	R	K	Y	Y	I	Y	R	P	W	G	P	R	H	H	S	N	P	H	N	T	I	V	L	Q	A	F	D	P	Q	T	G	T	L	S	P	E	R	K	T	L	F	T	G	T
Secondary structure
SS confidence
Disorder																											?	?																	?	?	?	?					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		P	L	C	Y	T	E	G	A	H	L	Y	R	H	A	G	W	Y	Y	L	M	A	A	E	G	G	T	S	Y	E	H	A	V	V	V	L	R	S	K	N	I	D	G	P	Y	E	L	H	P	D	V	T	M	M	T	S	W	H	L	P	E
Secondary structure
SS confidence
Disorder																																																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		N	P	L	Q	K	S	G	H	G	S	L	L	Q	T	H	T	G	E	W	Y	M	A	Y	L	T	S	R	P	L	R	L	P	G	V	P	L	L	A	S	G	G	R	G	Y	C	P	L	G	R	E	T	G	I	A	R	I	E	W	R	D
Secondary structure
SS confidence
Disorder																													?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		G	W	P	Y	V	E	G	G	K	H	A	Q	L	T	V	K	G	P	Q	V	A	E	Q	P	A	A	V	P	G	N	W	R	D	D	F	D	A	S	S	L	D	P	E	L	Q	T	L	R	I	P	F	D	D	T	L	G	S	L	T	A
Secondary structure
SS confidence
Disorder										?	?	?	?	?	?		?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		R	P	G	F	L	R	L	Y	G	N	D	S	L	N	S	T	F	T	Q	S	T	V	A	R	R	W	Q	H	F	A	F	R	A	E	T	R	M	E	F	S	P	V	H	F	Q	Q	S	A	G	L	T	C	Y	Y	N	S	K	N	W	S
Secondary structure
SS confidence
Disorder													?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		Y	C	F	V	D	Y	E	E	G	Q	G	R	T	I	K	V	I	Q	L	D	H	N	V	P	S	W	P	L	H	E	Q	P	I	P	V	P	E	H	A	E	S	V	W	L	R	V	D	V	D	T	L	V	Y	R	Y	S	Y	S	F	D
Secondary structure
SS confidence
Disorder																					?	?	?	?	?	?	?		?	?	?							?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
Sequence		G	E	T	W	H	T	V	P	V	T	Y	E	A	W	K	L	S	D	D	Y	I	G	G	R	G	F	F	T	G	A	F	V	G	L	H	C	E	D	I	S	G	D	G	C	Y	A	D	F	D	Y	F	T	Y	E	P	V
Secondary structure
SS confidence
Disorder																																											?	?	?												?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2exi chain A Region: 2 - 536 Aligned: 533 Modelled: 535 Confidence: 100.0% Identity: 57% PDB header:hydrolase Chain: A: PDB Molecule:beta-d-xylosidase; PDBTitle: structure of the family43 beta-xylosidase d15g mutant from geobacillus2 stearothermophilus Phyre2 PDB 1yif chain C Region: 2 - 535 Aligned: 531 Modelled: 534 Confidence: 100.0% Identity: 54% PDB header:hydrolase Chain: C: PDB Molecule:beta-1,4-xylosidase; PDBTitle: crystal structure of beta-1,4-xylosidase from bacillus2 subtilis, new york structural genomics consortium Phyre2 PDB 1yrz chain B Region: 2 - 535 Aligned: 520 Modelled: 534 Confidence: 100.0% Identity: 48% PDB header:hydrolase Chain: B: PDB Molecule:xylan beta-1,4-xylosidase; PDBTitle: crystal structure of xylan beta-1,4-xylosidase from bacillus2 halodurans c-125 Phyre2 PDB 1yi7 chain C Region: 3 - 535 Aligned: 531 Modelled: 533 Confidence: 100.0% Identity: 54% PDB header:hydrolase Chain: C: PDB Molecule:beta-xylosidase, family 43 glycosyl hydrolase; PDBTitle: beta-d-xylosidase (selenomethionine) xynd from clostridium2 acetobutylicum Phyre2 PDB 2exh chain A domain 2 Region: 2 - 324 Aligned: 321 Modelled: 323 Confidence: 100.0% Identity: 60% Fold: 5-bladed beta-propeller Superfamily: Arabinanase/levansucrase/invertase Family: alpha-L-arabinanase-like Phyre2 PDB 1yif chain A domain 2 Region: 2 - 323 Aligned: 320 Modelled: 322 Confidence: 100.0% Identity: 58% Fold: 5-bladed beta-propeller Superfamily: Arabinanase/levansucrase/invertase Family: alpha-L-arabinanase-like Phyre2 PDB 1y7b chain A domain 2 Region: 3 - 325 Aligned: 321 Modelled: 323 Confidence: 100.0% Identity: 57% Fold: 5-bladed beta-propeller Superfamily: Arabinanase/levansucrase/invertase Family: alpha-L-arabinanase-like Phyre2 PDB 1yrz chain A domain 2 Region: 2 - 328 Aligned: 316 Modelled: 327 Confidence: 100.0% Identity: 54% Fold: 5-bladed beta-propeller Superfamily: Arabinanase/levansucrase/invertase Family: alpha-L-arabinanase-like Phyre2 PDB 3lv4 chain B Region: 6 - 418 Aligned: 362 Modelled: 374 Confidence: 100.0% Identity: 23% PDB header:hydrolase Chain: B: PDB Molecule:glycoside hydrolase yxia; PDBTitle: crystal structure of the glycoside hydrolase, family 43 yxia2 protein from bacillus licheniformis. northeast structural3 genomics consortium target bir14. Phyre2 PDB 3akg chain A Region: 3 - 401 Aligned: 379 Modelled: 399 Confidence: 100.0% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:putative secreted alpha l-arabinofuranosidase ii; PDBTitle: crystal structure of exo-1,5-alpha-l-arabinofuranosidase complexed2 with alpha-1,5-l-arabinofuranobiose Phyre2 PDB 3c7h chain A Region: 3 - 477 Aligned: 412 Modelled: 437 Confidence: 100.0% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:endo-1,4-beta-xylanase; PDBTitle: crystal structure of glycoside hydrolase family 43 arabinoxylan2 arabinofuranohydrolase from bacillus subtilis in complex with axos-4-3 0.5. Phyre2 PDB 3cpn chain A Region: 2 - 316 Aligned: 297 Modelled: 314 Confidence: 100.0% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:beta-xylosidase, family 43 glycosyl hydrolase; PDBTitle: crystal structure of beta-xylosidase, family 43 glycosyl2 hydrolase from clostridium acetobutylicum Phyre2 PDB 1gyh chain A Region: 8 - 307 Aligned: 269 Modelled: 277 Confidence: 100.0% Identity: 22% Fold: 5-bladed beta-propeller Superfamily: Arabinanase/levansucrase/invertase Family: alpha-L-arabinanase-like Phyre2 PDB 3kst chain A Region: 4 - 316 Aligned: 275 Modelled: 288 Confidence: 100.0% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:endo-1,4-beta-xylanase; PDBTitle: crystal structure of endo-1,4-beta-xylanase (np_811807.1)2 from bacteroides thetaiotaomicron vpi-5482 at 1.70 a3 resolution Phyre2 PDB 1wl7 chain A domain 1 Region: 11 - 305 Aligned: 264 Modelled: 276 Confidence: 100.0% Identity: 22% Fold: 5-bladed beta-propeller Superfamily: Arabinanase/levansucrase/invertase Family: alpha-L-arabinanase-like Phyre2 PDB 1uv4 chain A domain 1 Region: 5 - 305 Aligned: 272 Modelled: 278 Confidence: 100.0% Identity: 21% Fold: 5-bladed beta-propeller Superfamily: Arabinanase/levansucrase/invertase Family: alpha-L-arabinanase-like Phyre2 PDB 3p2n chain B Region: 3 - 359 Aligned: 278 Modelled: 290 Confidence: 100.0% Identity: 18% PDB header:hydrolase Chain: B: PDB Molecule:3,6-anhydro-alpha-l-galactosidase; PDBTitle: discovery and structural characterization of a new glycoside hydrolase2 family abundant in coastal waters that was annotated as 'hypothetical3 protein' Phyre2 PDB 3qef chain B Region: 4 - 316 Aligned: 271 Modelled: 311 Confidence: 100.0% Identity: 23% PDB header:hydrolase Chain: B: PDB Molecule:beta-xylosidase/alpha-l-arabinfuranosidase, gly43n; PDBTitle: the structure and function of an arabinan-specific alpha-1,2-2 arabinofuranosidase identified from screening the activities of3 bacterial gh43 glycoside hydrolases Phyre2 PDB 3qz4 chain B Region: 5 - 305 Aligned: 275 Modelled: 290 Confidence: 100.0% Identity: 23% PDB header:hydrolase Chain: B: PDB Molecule:endo-1,4-beta-xylanase d; PDBTitle: crystal structure of an endo-1,4-beta-xylanase d (bt_3675) from2 bacteroides thetaiotaomicron vpi-5482 at 1.74 a resolution Phyre2 PDB 1y7b chain A domain 1 Region: 327 - 535 Aligned: 209 Modelled: 209 Confidence: 100.0% Identity: 50% Fold: Concanavalin A-like lectins/glucanases Superfamily: Concanavalin A-like lectins/glucanases Family: Beta-D-xylosidase C-terminal domain-like Phyre2 1 c2exiA_ 2 c1yifC_ 3 c1yrzB_ 4 c1yi7C_ 5 d2exha2 6 d1yifa2 7 d1y7ba2 8 d1yrza2 9 c3lv4B_ 10 c3akgA_ 11 c3c7hA_ 12 c3cpnA_ 13 d1gyha_ 14 c3kstA_ 15 d1wl7a1 16 d1uv4a1 17 c3p2nB_ 18 c3qefB_ 19 c3qz4B_ 20 d1y7ba1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2exiA_ 100.0 57 PDB header:hydrolase Chain: A: PDB Molecule:beta-d-xylosidase; PDBTitle: structure of the family43 beta-xylosidase d15g mutant from geobacillus2 stearothermophilus 2 c1yifC_ 100.0 54 PDB header:hydrolase Chain: C: PDB Molecule:beta-1,4-xylosidase; PDBTitle: crystal structure of beta-1,4-xylosidase from bacillus2 subtilis, new york structural genomics consortium 3 c1yrzB_ 100.0 48 PDB header:hydrolase Chain: B: PDB Molecule:xylan beta-1,4-xylosidase; PDBTitle: crystal structure of xylan beta-1,4-xylosidase from bacillus2 halodurans c-125 4 c1yi7C_ 100.0 54 PDB header:hydrolase Chain: C: PDB Molecule:beta-xylosidase, family 43 glycosyl hydrolase; PDBTitle: beta-d-xylosidase (selenomethionine) xynd from clostridium2 acetobutylicum 5 d2exha2 100.0 60 Fold:5-bladed beta-propeller Superfamily:Arabinanase/levansucrase/invertase Family:alpha-L-arabinanase-like 6 d1yifa2 100.0 58 Fold:5-bladed beta-propeller Superfamily:Arabinanase/levansucrase/invertase Family:alpha-L-arabinanase-like 7 d1y7ba2 100.0 57 Fold:5-bladed beta-propeller Superfamily:Arabinanase/levansucrase/invertase Family:alpha-L-arabinanase-like 8 d1yrza2 100.0 54 Fold:5-bladed beta-propeller Superfamily:Arabinanase/levansucrase/invertase Family:alpha-L-arabinanase-like 9 c3lv4B_ 100.0 23 PDB header:hydrolase Chain: B: PDB Molecule:glycoside hydrolase yxia; PDBTitle: crystal structure of the glycoside hydrolase, family 43 yxia2 protein from bacillus licheniformis. northeast structural3 genomics consortium target bir14. 10 c3akgA_ 100.0 17 PDB header:hydrolase Chain: A: PDB Molecule:putative secreted alpha l-arabinofuranosidase ii; PDBTitle: crystal structure of exo-1,5-alpha-l-arabinofuranosidase complexed2 with alpha-1,5-l-arabinofuranobiose 11 c3c7hA_ 100.0 20 PDB header:hydrolase Chain: A: PDB Molecule:endo-1,4-beta-xylanase; PDBTitle: crystal structure of glycoside hydrolase family 43 arabinoxylan2 arabinofuranohydrolase from bacillus subtilis in complex with axos-4-3 0.5. 12 c3cpnA_ 100.0 18 PDB header:hydrolase Chain: A: PDB Molecule:beta-xylosidase, family 43 glycosyl hydrolase; PDBTitle: crystal structure of beta-xylosidase, family 43 glycosyl2 hydrolase from clostridium acetobutylicum 13 d1gyha_ 100.0 22 Fold:5-bladed beta-propeller Superfamily:Arabinanase/levansucrase/invertase Family:alpha-L-arabinanase-like 14 c3kstA_ 100.0 23 PDB header:hydrolase Chain: A: PDB Molecule:endo-1,4-beta-xylanase; PDBTitle: crystal structure of endo-1,4-beta-xylanase (np_811807.1)2 from bacteroides thetaiotaomicron vpi-5482 at 1.70 a3 resolution 15 d1wl7a1 100.0 22 Fold:5-bladed beta-propeller Superfamily:Arabinanase/levansucrase/invertase Family:alpha-L-arabinanase-like 16 d1uv4a1 100.0 21 Fold:5-bladed beta-propeller Superfamily:Arabinanase/levansucrase/invertase Family:alpha-L-arabinanase-like 17 c3p2nB_ 100.0 18 PDB header:hydrolase Chain: B: PDB Molecule:3,6-anhydro-alpha-l-galactosidase; PDBTitle: discovery and structural characterization of a new glycoside hydrolase2 family abundant in coastal waters that was annotated as 'hypothetical3 protein' 18 c3qefB_ 100.0 23 PDB header:hydrolase Chain: B: PDB Molecule:beta-xylosidase/alpha-l-arabinfuranosidase, gly43n; PDBTitle: the structure and function of an arabinan-specific alpha-1,2-2 arabinofuranosidase identified from screening the activities of3 bacterial gh43 glycoside hydrolases 19 c3qz4B_ 100.0 23 PDB header:hydrolase Chain: B: PDB Molecule:endo-1,4-beta-xylanase d; PDBTitle: crystal structure of an endo-1,4-beta-xylanase d (bt_3675) from2 bacteroides thetaiotaomicron vpi-5482 at 1.74 a resolution 20 d1y7ba1 100.0 50 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Beta-D-xylosidase C-terminal domain-like 21 d2exha1 not modelled 100.0 54 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Beta-D-xylosidase C-terminal domain-like 22 d1yifa1 not modelled 100.0 49 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Beta-D-xylosidase C-terminal domain-like 23 d1yrza1 not modelled 100.0 37 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Beta-D-xylosidase C-terminal domain-like 24 c3nqhA_ not modelled 100.0 14 PDB header:hydrolase Chain: A: PDB Molecule:glycosyl hydrolase; PDBTitle: crystal structure of a glycosyl hydrolase (bt_2959) from bacteroides2 thetaiotaomicron vpi-5482 at 2.11 a resolution 25 c3o12A_ not modelled 100.0 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yjl217w; PDBTitle: the crystal structure of a functionally unknown protein from2 saccharomyces cerevisiae. 26 c1w2tE_ not modelled 99.9 15 PDB header:hydrolase Chain: E: PDB Molecule:beta fructosidase; PDBTitle: beta-fructosidase from thermotoga maritima in complex with2 raffinose 27 c3mepC_ not modelled 99.9 18 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein eca2234; PDBTitle: crystal structure of eca2234 protein from erwinia2 carotovora, northeast structural genomics consortium target3 ewr44 28 c3pijA_ not modelled 99.9 15 PDB header:hydrolase Chain: A: PDB Molecule:beta-fructofuranosidase; PDBTitle: beta-fructofuranosidase from bifidobacterium longum - complex with2 fructose 29 d1uypa2 not modelled 99.8 16 Fold:5-bladed beta-propeller Superfamily:Arabinanase/levansucrase/invertase Family:Glycosyl hydrolases family 32 N-terminal domain 30 c1y9gA_ not modelled 99.8 15 PDB header:hydrolase Chain: A: PDB Molecule:exo-inulinase; PDBTitle: crystal structure of exo-inulinase from aspergillus awamori complexed2 with fructose 31 c3kf5A_ not modelled 99.8 12 PDB header:hydrolase Chain: A: PDB Molecule:invertase; PDBTitle: structure of invertase from schwanniomyces occidentalis 32 d1vkda_ not modelled 99.8 12 Fold:5-bladed beta-propeller Superfamily:Arabinanase/levansucrase/invertase Family:TM1225-like predicted glycosylases 33 c2aezA_ not modelled 99.7 14 PDB header:hydrolase Chain: A: PDB Molecule:fructan 1-exohydrolase iia; PDBTitle: crystal structure of fructan 1-exohydrolase iia (e201q) from cichorium2 intybus in complex with 1-kestose 34 c3bykA_ not modelled 99.7 17 PDB header:transferase Chain: A: PDB Molecule:levansucrase; PDBTitle: crystal structure of b. subtilis levansucrase mutant d247a 35 c3ugfB_ not modelled 99.7 14 PDB header:transferase Chain: B: PDB Molecule:sucrose:(sucrose/fructan) 6-fructosyltransferase; PDBTitle: crystal structure of a 6-sst/6-sft from pachysandra terminalis 36 c2ac1A_ not modelled 99.7 12 PDB header:hydrolase Chain: A: PDB Molecule:invertase; PDBTitle: crystal structure of a cell-wall invertase from arabidopsis thaliana 37 d1oyga_ not modelled 99.7 18 Fold:5-bladed beta-propeller Superfamily:Arabinanase/levansucrase/invertase Family:Levansucrase 38 c3lemA_ not modelled 99.6 15 PDB header:hydrolase Chain: A: PDB Molecule:fructosyltransferase; PDBTitle: crystal structure of fructosyltransferase (d191a) from a. japonicus in2 complex with nystose 39 c2yfrA_ not modelled 99.6 17 PDB header:transferase Chain: A: PDB Molecule:levansucrase; PDBTitle: crystal structure of inulosucrase from lactobacillus2 johnsonii ncc533 40 d1y4wa2 not modelled 99.5 18 Fold:5-bladed beta-propeller Superfamily:Arabinanase/levansucrase/invertase Family:Glycosyl hydrolases family 32 N-terminal domain 41 c3tawA_ not modelled 99.4 16 PDB header:hydrolase Chain: A: PDB Molecule:hypothetical glycoside hydrolase; PDBTitle: crystal structure of a hypothetical glycoside hydrolase (bdi_3141)2 from parabacteroides distasonis atcc 8503 at 1.70 a resolution 42 c3qc2A_ not modelled 99.4 17 PDB header:hydrolase Chain: A: PDB Molecule:glycosyl hydrolase; PDBTitle: crystal structure of a glycosyl hydrolase (bacova_03624) from2 bacteroides ovatus at 2.30 a resolution 43 c1w18A_ not modelled 99.4 16 PDB header:transferase Chain: A: PDB Molecule:levansucrase; PDBTitle: crystal structure of levansucrase from gluconacetobacter2 diazotrophicus 44 c3r67A_ not modelled 99.3 15 PDB header:hydrolase Chain: A: PDB Molecule:putative glycosidase; PDBTitle: crystal structure of a putative glycosidase (bt_4094) from bacteroides2 thetaiotaomicron vpi-5482 at 2.30 a resolution 45 c2xcyA_ not modelled 95.9 15 PDB header:hydrolase Chain: A: PDB Molecule:extracellular sialidase/neuraminidase, putative; PDBTitle: crystal structure of aspergillus fumigatus sialidase 46 c3a72A_ not modelled 95.7 16 PDB header:hydrolase Chain: A: PDB Molecule:exo-arabinanase; PDBTitle: high resolution structure of penicillium chrysogenum alpha-l-2 arabinanase complexed with arabinobiose 47 d2ayha_ not modelled 94.1 15 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Glycosyl hydrolases family 16 48 c3i4iA_ not modelled 93.5 11 PDB header:hydrolase Chain: A: PDB Molecule:1,3-1,4-beta-glucanase; PDBTitle: crystal structure of a prokaryotic beta-1,3-1,4-glucanase (lichenase)2 derived from a mouse hindgut metagenome 49 d1gbga_ not modelled 91.4 12 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Glycosyl hydrolases family 16 50 c1upsB_ not modelled 91.0 17 PDB header:glycosyl hydrolase Chain: B: PDB Molecule:glcnac-alpha-1,4-gal-releasing endo-beta- PDBTitle: glcnac[alpha]1-4gal releasing endo-[beta]-galactosidase2 from clostridium perfringens 51 c2w5oA_ not modelled 90.6 13 PDB header:hydrolase Chain: A: PDB Molecule:alpha-l-arabinofuranosidase; PDBTitle: complex structure of the gh93 alpha-l-arabinofuranosidase2 of fusarium graminearum with arabinobiose 52 c3juuA_ not modelled 89.4 18 PDB header:hydrolase/carbohydrate Chain: A: PDB Molecule:porphyranase b; PDBTitle: crystal structure of porphyranase b (porb) from zobellia2 galactanivorans 53 c1yo8A_ not modelled 88.2 15 PDB header:cell adhesion Chain: A: PDB Molecule:thrombospondin-2; PDBTitle: structure of the c-terminal domain of human thrombospondin-2 54 c3o5sA_ not modelled 87.8 12 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucanase; PDBTitle: crystal structure of the endo-beta-1,3-1,4 glucanase from bacillus2 subtilis (strain 168) 55 c3fbyC_ not modelled 85.1 15 PDB header:cell adhesion Chain: C: PDB Molecule:cartilage oligomeric matrix protein; PDBTitle: the crystal structure of the signature domain of cartilage oligomeric2 matrix protein. 56 c3rq0A_ not modelled 83.6 12 PDB header:hydrolase Chain: A: PDB Molecule:glycosyl hydrolases family protein 16; PDBTitle: the crystal structure of a glycosyl hydrolases (gh) family protein 162 from mycobacterium smegmatis str. mc2 155 57 d1o4ya_ not modelled 82.9 14 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Glycosyl hydrolases family 16 58 c2w38A_ not modelled 77.1 15 PDB header:transferase Chain: A: PDB Molecule:sialidase; PDBTitle: crystal structure of the pseudaminidase from pseudomonas2 aeruginosa 59 d1w8oa3 not modelled 76.4 15 Fold:6-bladed beta-propeller Superfamily:Sialidases Family:Sialidases (neuraminidases) 60 c3zr6A_ not modelled 75.8 16 PDB header:hydrolase Chain: A: PDB Molecule:galactocerebrosidase; PDBTitle: structure of galactocerebrosidase from mouse in complex with2 galactose 61 c3dgtA_ not modelled 72.1 23 PDB header:hydrolase Chain: A: PDB Molecule:endo-1,3-beta-glucanase; PDBTitle: the 1.5 a crystal structure of endo-1,3-beta-glucanase from2 streptomyces sioyaensis 62 d1upsa1 not modelled 71.7 18 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Glycosyl hydrolases family 16 63 d1o4za_ not modelled 67.2 9 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Glycosyl hydrolases family 16 64 c1o4zA_ not modelled 67.2 9 PDB header:hydrolase Chain: A: PDB Molecule:beta-agarase b; PDBTitle: the three-dimensional structure of beta-agarase b from2 zobellia galactanivorans 65 c2berA_ not modelled 66.8 16 PDB header:hydrolase Chain: A: PDB Molecule:bacterial sialidase; PDBTitle: y370g active site mutant of the sialidase from2 micromonospora viridifaciens in complex with beta-neu5ac3 (sialic acid). 66 d2b4wa1 not modelled 64.6 10 Fold:5-bladed beta-propeller Superfamily:Arabinanase/levansucrase/invertase Family:LmjF10.1260-like 67 d1y4wa1 not modelled 63.1 12 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Glycosyl hydrolases family 32 C-terminal domain 68 d2ah2a2 not modelled 62.8 15 Fold:6-bladed beta-propeller Superfamily:Sialidases Family:Sialidases (neuraminidases) 69 c2w20B_ not modelled 59.9 13 PDB header:hydrolase Chain: B: PDB Molecule:sialidase a; PDBTitle: structure of the catalytic domain of the native nana2 sialidase from streptococcus pneumoniae 70 c1ux6A_ not modelled 55.9 14 PDB header:cell adhesion Chain: A: PDB Molecule:thrombospondin-1; PDBTitle: structure of a thrombospondin c-terminal fragment reveals a2 novel calcium core in the type 3 repeats 71 c3h3lB_ not modelled 55.0 14 PDB header:hydrolase Chain: B: PDB Molecule:putative sugar hydrolase; PDBTitle: crystal structure of putative sugar hydrolase (yp_001304206.1) from2 parabacteroides distasonis atcc 8503 at 1.59 a resolution 72 c3azyA_ not modelled 54.7 18 PDB header:hydrolase Chain: A: PDB Molecule:laminarinase; PDBTitle: crystal structure of the laminarinase catalytic domain from thermotoga2 maritima msb8 73 d1fbla1 not modelled 50.1 16 Fold:4-bladed beta-propeller Superfamily:Hemopexin-like domain Family:Hemopexin-like domain 74 c2vk7A_ not modelled 44.1 11 PDB header:hydrolase Chain: A: PDB Molecule:exo-alpha-sialidase; PDBTitle: the structure of clostridium perfringens nani sialidase and2 its catalytic intermediates 75 c3nmbA_ not modelled 44.0 12 PDB header:hydrolase Chain: A: PDB Molecule:putative sugar hydrolase; PDBTitle: crystal structure of a putative sugar hydrolase (bacova_03189) from2 bacteroides ovatus at 2.40 a resolution 76 c3ecqA_ not modelled 42.0 11 PDB header:hydrolase Chain: A: PDB Molecule:endo-alpha-n-acetylgalactosaminidase; PDBTitle: endo-alpha-n-acetylgalactosaminidase from streptococcus pneumoniae:2 semet structure 77 d1dypa_ not modelled 39.0 13 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Glycosyl hydrolases family 16 78 d1n1ta2 not modelled 36.0 15 Fold:6-bladed beta-propeller Superfamily:Sialidases Family:Sialidases (neuraminidases) 79 c3u1xA_ not modelled 35.6 11 PDB header:hydrolase Chain: A: PDB Molecule:putative glycosyl hydrolase; PDBTitle: crystal structure of a putative glycosyl hydrolase (bdi_1869) from2 parabacteroides distasonis atcc 8503 at 1.70 a resolution 80 c1su3A_ not modelled 35.4 16 PDB header:hydrolase Chain: A: PDB Molecule:interstitial collagenase; PDBTitle: x-ray structure of human prommp-1: new insights into2 collagenase action 81 d1w0pa3 not modelled 35.3 9 Fold:6-bladed beta-propeller Superfamily:Sialidases Family:Sialidases (neuraminidases) 82 c2vvzA_ not modelled 34.6 13 PDB header:hydrolase Chain: A: PDB Molecule:sialidase a; PDBTitle: structure of the catalytic domain of streptococcus2 pneumoniae sialidase nana 83 d3sila_ not modelled 30.5 15 Fold:6-bladed beta-propeller Superfamily:Sialidases Family:Sialidases (neuraminidases) 84 d1ux6a1 not modelled 29.1 17 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Thrombospondin C-terminal domain 85 d1pexa_ not modelled 28.1 11 Fold:4-bladed beta-propeller Superfamily:Hemopexin-like domain Family:Hemopexin-like domain 86 c3oyoB_ not modelled 23.8 11 PDB header:plant protein Chain: B: PDB Molecule:hemopexin fold protein cp4; PDBTitle: crystal structure of hemopexin fold protein cp4 from cow pea 87 d2a6za1 not modelled 23.5 12 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Lectin leg-like 88 d1gena_ not modelled 23.1 9 Fold:4-bladed beta-propeller Superfamily:Hemopexin-like domain Family:Hemopexin-like domain 89 d1su3a2 not modelled 20.6 14 Fold:4-bladed beta-propeller Superfamily:Hemopexin-like domain Family:Hemopexin-like domain 90 c1gxdA_ not modelled 20.5 10 PDB header:hydrolase Chain: A: PDB Molecule:72 kda type iv collagenase; PDBTitle: prommp-2/timp-2 complex 91 c3ilfA_ not modelled 19.2 13 PDB header:hydrolase/carbohydrate Chain: A: PDB Molecule:porphyranase a; PDBTitle: crystal structure of porphyranase a (pora) in complex with2 neo-porphyrotetraose 92 c3c7xA_ not modelled 17.6 17 PDB header:hydrolase Chain: A: PDB Molecule:matrix metalloproteinase-14; PDBTitle: hemopexin-like domain of matrix metalloproteinase 14 93 c3hbkA_ not modelled 17.2 14 PDB header:hydrolase Chain: A: PDB Molecule:putative glycosyl hydrolase; PDBTitle: crystal structure of putative glycosyl hydrolase, was domain of2 unknown function (duf1080) (yp_001302580.1) from parabacteroides3 distasonis atcc 8503 at 2.36 a resolution 94 c3eypB_ not modelled 16.4 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative alpha-l-fucosidase; PDBTitle: crystal structure of putative alpha-l-fucosidase from bacteroides2 thetaiotaomicron 95 c3lp9C_ not modelled 16.2 15 PDB header:plant protein Chain: C: PDB Molecule:ls-24; PDBTitle: crystal structure of ls24, a seed albumin from lathyrus2 sativus 96 c2v5dA_ not modelled 16.2 25 PDB header:hydrolase Chain: A: PDB Molecule:o-glcnacase nagj; PDBTitle: structure of a family 84 glycoside hydrolase and a family2 32 carbohydrate-binding module in tandem from clostridium3 perfringens. 97 d1czsa_ not modelled 14.5 31 Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain) 98 c2xqxB_ not modelled 13.8 13 PDB header:sugar binding protein Chain: B: PDB Molecule:endo-beta-n-acetylglucosaminidase d; PDBTitle: structure of the family 32 carbohydrate-binding module from2 streptococcus pneumoniae endod 99 c3jtoE_ not modelled 13.7 33 PDB header:protein binding Chain: E: PDB Molecule:adapter protein meca 2; PDBTitle: crystal structure of the c-terminal domain of ypbh

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0