Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	A	Y	F	D	Q	L	D	R	V	R	Y	E	G	S	K	S	S	N	P	L	A	F	R	H	Y	N	P	D	E	L	V	L	G	K	R	M	E	E	H	L	R	F	A	A	C	Y	W	H	T	F	C	W	N	G	A	D	M	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?								?		?		?	?															?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	V	G	A	F	N	R	P	W	Q	Q	P	G	E	A	L	A	L	A	K	R	K	A	D	V	A	F	E	F	F	H	K	L	H	V	P	F	Y	C	F	H	D	V	D	V	S	P	E	G	A	S	L	K	E	Y	I	N	N	F	A
Secondary structure
SS confidence
Disorder												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		Q	M	V	D	V	L	A	G	K	Q	E	E	S	G	V	K	L	L	W	G	T	A	N	C	F	T	N	P	R	Y	G	A	G	A	A	T	N	P	D	P	E	V	F	S	W	A	A	T	Q	V	V	T	A	M	E	A	T	H	K	L
Secondary structure
SS confidence
Disorder																																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	G	E	N	Y	V	L	W	G	G	R	E	G	Y	E	T	L	L	N	T	D	L	R	Q	E	R	E	Q	L	G	R	F	M	Q	M	V	V	E	H	K	H	K	I	G	F	Q	G	T	L	L	I	E	P	K	P	Q	E	P	T	K
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		H	Q	Y	D	Y	D	A	A	T	V	Y	G	F	L	K	Q	F	G	L	E	K	E	I	K	L	N	I	E	A	N	H	A	T	L	A	G	H	S	F	H	H	E	I	A	T	A	I	A	L	G	L	F	G	S	V	D	A	N	R	G
Secondary structure
SS confidence
Disorder																																																													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		D	A	Q	L	G	W	D	T	D	Q	F	P	N	S	V	E	E	N	A	L	V	M	Y	E	I	L	K	A	G	G	F	T	T	G	G	L	N	F	D	A	K	V	R	R	Q	S	T	D	K	Y	D	L	F	Y	G	H	I	G	A	M
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?																																	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		D	T	M	A	L	A	L	K	I	A	A	R	M	I	E	D	G	E	L	D	K	R	I	A	Q	R	Y	S	G	W	N	S	E	L	G	Q	Q	I	L	K	G	Q	M	S	L	A	D	L	A	K	Y	A	Q	E	H	H	L	S	P	V
Secondary structure
SS confidence
Disorder																										?			?												?	?														?				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Sequence		H	Q	S	G	R	Q	E	Q	L	E	N	L	V	N	H	Y	L	F	D	K
Secondary structure
SS confidence
Disorder		?	?	?	?													?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1a0c chain A Region: 3 - 439 Aligned: 436 Modelled: 437 Confidence: 100.0% Identity: 50% Fold: TIM beta/alpha-barrel Superfamily: Xylose isomerase-like Family: Xylose isomerase Phyre2 PDB 1a0e chain A Region: 2 - 439 Aligned: 437 Modelled: 438 Confidence: 100.0% Identity: 51% Fold: TIM beta/alpha-barrel Superfamily: Xylose isomerase-like Family: Xylose isomerase Phyre2 PDB 1a0d chain A Region: 4 - 439 Aligned: 434 Modelled: 436 Confidence: 100.0% Identity: 53% Fold: TIM beta/alpha-barrel Superfamily: Xylose isomerase-like Family: Xylose isomerase Phyre2 PDB 1xlm chain A Region: 34 - 434 Aligned: 377 Modelled: 388 Confidence: 100.0% Identity: 26% Fold: TIM beta/alpha-barrel Superfamily: Xylose isomerase-like Family: Xylose isomerase Phyre2 PDB 2glk chain A domain 1 Region: 36 - 438 Aligned: 377 Modelled: 397 Confidence: 100.0% Identity: 25% Fold: TIM beta/alpha-barrel Superfamily: Xylose isomerase-like Family: Xylose isomerase Phyre2 PDB 1xim chain A Region: 39 - 434 Aligned: 374 Modelled: 385 Confidence: 100.0% Identity: 25% Fold: TIM beta/alpha-barrel Superfamily: Xylose isomerase-like Family: Xylose isomerase Phyre2 PDB 1muw chain A Region: 36 - 434 Aligned: 376 Modelled: 384 Confidence: 100.0% Identity: 26% Fold: TIM beta/alpha-barrel Superfamily: Xylose isomerase-like Family: Xylose isomerase Phyre2 PDB 1qt1 chain A Region: 36 - 437 Aligned: 374 Modelled: 387 Confidence: 100.0% Identity: 26% Fold: TIM beta/alpha-barrel Superfamily: Xylose isomerase-like Family: Xylose isomerase Phyre2 PDB 1bxc chain A Region: 34 - 438 Aligned: 372 Modelled: 400 Confidence: 100.0% Identity: 27% Fold: TIM beta/alpha-barrel Superfamily: Xylose isomerase-like Family: Xylose isomerase Phyre2 PDB 1bxb chain A Region: 36 - 438 Aligned: 380 Modelled: 390 Confidence: 100.0% Identity: 27% Fold: TIM beta/alpha-barrel Superfamily: Xylose isomerase-like Family: Xylose isomerase Phyre2 PDB 2i56 chain A Region: 36 - 427 Aligned: 356 Modelled: 389 Confidence: 100.0% Identity: 18% PDB header:isomerase, metal-binding protein Chain: A: PDB Molecule:l-rhamnose isomerase; PDBTitle: crystal structure of l-rhamnose isomerase from pseudomonas2 stutzeri with l-rhamnose Phyre2 PDB 3ktc chain B Region: 41 - 386 Aligned: 301 Modelled: 325 Confidence: 100.0% Identity: 19% PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_050048.1) from2 erwinia carotovora atroseptica scri1043 at 1.54 a resolution Phyre2 PDB 2qw5 chain B Region: 59 - 303 Aligned: 226 Modelled: 237 Confidence: 99.9% Identity: 16% PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase-like tim barrel; PDBTitle: crystal structure of a putative sugar phosphate isomerase/epimerase2 (ava4194) from anabaena variabilis atcc 29413 at 1.78 a resolution Phyre2 PDB 3qxb chain B Region: 86 - 365 Aligned: 268 Modelled: 276 Confidence: 99.9% Identity: 13% PDB header:isomerase Chain: B: PDB Molecule:putative xylose isomerase; PDBTitle: crystal structure of a putative xylose isomerase (yp_426450.1) from2 rhodospirillum rubrum atcc 11170 at 1.90 a resolution Phyre2 PDB 1k77 chain A Region: 83 - 345 Aligned: 230 Modelled: 248 Confidence: 99.8% Identity: 14% Fold: TIM beta/alpha-barrel Superfamily: Xylose isomerase-like Family: Hypothetical protein YgbM (EC1530) Phyre2 PDB 1d8w chain A Region: 36 - 388 Aligned: 313 Modelled: 346 Confidence: 99.8% Identity: 18% Fold: TIM beta/alpha-barrel Superfamily: Xylose isomerase-like Family: L-rhamnose isomerase Phyre2 PDB 2hk1 chain D Region: 60 - 339 Aligned: 241 Modelled: 268 Confidence: 99.8% Identity: 16% PDB header:isomerase Chain: D: PDB Molecule:d-psicose 3-epimerase; PDBTitle: crystal structure of d-psicose 3-epimerase (dpease) in the presence of2 d-fructose Phyre2 PDB 2zds chain B Region: 68 - 374 Aligned: 280 Modelled: 302 Confidence: 99.8% Identity: 15% PDB header:dna binding protein Chain: B: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of sco6571 from streptomyces coelicolor2 a3(2) Phyre2 PDB 3kws chain B Region: 83 - 369 Aligned: 243 Modelled: 261 Confidence: 99.8% Identity: 13% PDB header:isomerase Chain: B: PDB Molecule:putative sugar isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_001305149.1) from2 parabacteroides distasonis atcc 8503 at 1.68 a resolution Phyre2 PDB 3p14 chain C Region: 36 - 388 Aligned: 317 Modelled: 349 Confidence: 99.8% Identity: 16% PDB header:isomerase Chain: C: PDB Molecule:l-rhamnose isomerase; PDBTitle: crystal structure of l-rhamnose isomerase with a novel high thermo-2 stability from bacillus halodurans Phyre2 1 d1a0ca_ 2 d1a0ea_ 3 d1a0da_ 4 d1xlma_ 5 d2glka1 6 d1xima_ 7 d1muwa_ 8 d1qt1a_ 9 d1bxca_ 10 d1bxba_ 11 c2i56A_ 12 c3ktcB_ 13 c2qw5B_ 14 c3qxbB_ 15 d1k77a_ 16 d1d8wa_ 17 c2hk1D_ 18 c2zdsB_ 19 c3kwsB_ 20 c3p14C_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1a0ca_ 100.0 50 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 2 d1a0ea_ 100.0 51 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 3 d1a0da_ 100.0 53 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 4 d1xlma_ 100.0 26 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 5 d2glka1 100.0 25 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 6 d1xima_ 100.0 25 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 7 d1muwa_ 100.0 26 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 8 d1qt1a_ 100.0 26 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 9 d1bxca_ 100.0 27 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 10 d1bxba_ 100.0 27 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 11 c2i56A_ 100.0 18 PDB header:isomerase, metal-binding protein Chain: A: PDB Molecule:l-rhamnose isomerase; PDBTitle: crystal structure of l-rhamnose isomerase from pseudomonas2 stutzeri with l-rhamnose 12 c3ktcB_ 100.0 19 PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_050048.1) from2 erwinia carotovora atroseptica scri1043 at 1.54 a resolution 13 c2qw5B_ 99.9 16 PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase-like tim barrel; PDBTitle: crystal structure of a putative sugar phosphate isomerase/epimerase2 (ava4194) from anabaena variabilis atcc 29413 at 1.78 a resolution 14 c3qxbB_ 99.9 13 PDB header:isomerase Chain: B: PDB Molecule:putative xylose isomerase; PDBTitle: crystal structure of a putative xylose isomerase (yp_426450.1) from2 rhodospirillum rubrum atcc 11170 at 1.90 a resolution 15 d1k77a_ 99.8 14 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Hypothetical protein YgbM (EC1530) 16 d1d8wa_ 99.8 18 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:L-rhamnose isomerase 17 c2hk1D_ 99.8 16 PDB header:isomerase Chain: D: PDB Molecule:d-psicose 3-epimerase; PDBTitle: crystal structure of d-psicose 3-epimerase (dpease) in the presence of2 d-fructose 18 c2zdsB_ 99.8 15 PDB header:dna binding protein Chain: B: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of sco6571 from streptomyces coelicolor2 a3(2) 19 c3kwsB_ 99.8 13 PDB header:isomerase Chain: B: PDB Molecule:putative sugar isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_001305149.1) from2 parabacteroides distasonis atcc 8503 at 1.68 a resolution 20 c3p14C_ 99.8 16 PDB header:isomerase Chain: C: PDB Molecule:l-rhamnose isomerase; PDBTitle: crystal structure of l-rhamnose isomerase with a novel high thermo-2 stability from bacillus halodurans 21 d1i60a_ not modelled 99.8 15 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like 22 d1xp3a1 not modelled 99.7 12 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Endonuclease IV 23 c3ju2A_ not modelled 99.7 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein smc04130; PDBTitle: crystal structure of protein smc04130 from sinorhizobium meliloti 1021 24 c2x7vA_ not modelled 99.7 12 PDB header:hydrolase Chain: A: PDB Molecule:probable endonuclease 4; PDBTitle: crystal structure of thermotoga maritima endonuclease iv in2 the presence of zinc 25 c3cqkB_ not modelled 99.7 14 PDB header:isomerase Chain: B: PDB Molecule:l-ribulose-5-phosphate 3-epimerase ulae; PDBTitle: crystal structure of l-xylulose-5-phosphate 3-epimerase ulae (form b)2 complex with zn2+ and sulfate 26 c2ou4C_ not modelled 99.7 13 PDB header:isomerase Chain: C: PDB Molecule:d-tagatose 3-epimerase; PDBTitle: crystal structure of d-tagatose 3-epimerase from2 pseudomonas cichorii 27 c3ngfA_ not modelled 99.7 15 PDB header:isomerase Chain: A: PDB Molecule:ap endonuclease, family 2; PDBTitle: crystal structure of ap endonuclease, family 2 from brucella2 melitensis 28 d1qtwa_ not modelled 99.6 10 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Endonuclease IV 29 c3dx5A_ not modelled 99.6 10 PDB header:lyase Chain: A: PDB Molecule:uncharacterized protein asbf; PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis 30 c2zvrA_ not modelled 99.6 12 PDB header:isomerase Chain: A: PDB Molecule:uncharacterized protein tm_0416; PDBTitle: crystal structure of a d-tagatose 3-epimerase-related2 protein from thermotoga maritima 31 d2g0wa1 not modelled 99.6 13 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like 32 c3obeB_ not modelled 99.5 11 PDB header:isomerase Chain: B: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_3400)2 from parabacteroides distasonis atcc 8503 at 1.70 a resolution 33 c3l23A_ not modelled 99.5 9 PDB header:isomerase Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of sugar phosphate isomerase/epimerase2 (yp_001303399.1) from parabacteroides distasonis atcc 8503 at 1.70 a3 resolution 34 c3aamA_ not modelled 99.5 19 PDB header:hydrolase Chain: A: PDB Molecule:endonuclease iv; PDBTitle: crystal structure of endonuclease iv from thermus thermophilus hb8 35 c3cnyA_ not modelled 99.5 7 PDB header:biosynthetic protein Chain: A: PDB Molecule:inositol catabolism protein iole; PDBTitle: crystal structure of a putative inositol catabolism protein iole2 (iole, lp_3607) from lactobacillus plantarum wcfs1 at 1.85 a3 resolution 36 d2q02a1 not modelled 99.4 14 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like 37 c3lmzA_ not modelled 99.4 11 PDB header:isomerase Chain: A: PDB Molecule:putative sugar isomerase; PDBTitle: crystal structure of putative sugar isomerase. (yp_001305105.1) from2 parabacteroides distasonis atcc 8503 at 1.44 a resolution 38 c3p6lA_ not modelled 99.3 10 PDB header:isomerase Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_1903)2 from parabacteroides distasonis atcc 8503 at 1.85 a resolution 39 d1tz9a_ not modelled 99.3 16 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:UxuA-like 40 d1yx1a1 not modelled 99.2 9 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:KguE-like 41 c3bdkB_ not modelled 99.0 16 PDB header:lyase Chain: B: PDB Molecule:d-mannonate dehydratase; PDBTitle: crystal structure of streptococcus suis mannonate2 dehydratase complexed with substrate analogue 42 c3bzjA_ not modelled 98.1 16 PDB header:hydrolase Chain: A: PDB Molecule:uv endonuclease; PDBTitle: uvde k229l 43 c2xn1B_ not modelled 90.7 25 PDB header:hydrolase Chain: B: PDB Molecule:alpha-galactosidase; PDBTitle: structure of alpha-galactosidase from lactobacillus acidophilus ncfm2 with tris 44 c2yfnA_ not modelled 87.6 21 PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase-sucrose kinase agask; PDBTitle: galactosidase domain of alpha-galactosidase-sucrose kinase,2 agask 45 c3lw6A_ not modelled 78.2 30 PDB header:transferase Chain: A: PDB Molecule:beta-4-galactosyltransferase 7; PDBTitle: crystal structure of drosophila beta1,4-galactosyltransferase-7 46 d1pzta_ not modelled 76.9 29 Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:beta 1,4 galactosyltransferase (b4GalT1) 47 d1pbga_ not modelled 68.6 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Family 1 of glycosyl hydrolase 48 c2z1sA_ not modelled 67.7 15 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase b; PDBTitle: beta-glucosidase b from paenibacillus polymyxa complexed2 with cellotetraose 49 c3mi6A_ not modelled 65.7 23 PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase; PDBTitle: crystal structure of the alpha-galactosidase from lactobacillus2 brevis, northeast structural genomics consortium target lbr11. 50 c3ahxC_ not modelled 61.1 16 PDB header:hydrolase Chain: C: PDB Molecule:beta-glucosidase a; PDBTitle: crystal structure of beta-glucosidase a from bacterium clostridium2 cellulovorans 51 c3n2oA_ not modelled 52.2 20 PDB header:lyase Chain: A: PDB Molecule:biosynthetic arginine decarboxylase; PDBTitle: x-ray crystal structure of arginine decarboxylase complexed with2 arginine from vibrio vulnificus 52 c1jvnB_ not modelled 52.0 24 PDB header:transferase Chain: B: PDB Molecule:bifunctional histidine biosynthesis protein hishf; PDBTitle: crystal structure of imidazole glycerol phosphate synthase: a tunnel2 through a (beta/alpha)8 barrel joins two active sites 53 d1cf3a2 not modelled 46.0 18 Fold:FAD-linked reductases, C-terminal domain Superfamily:FAD-linked reductases, C-terminal domain Family:GMC oxidoreductases 54 d1ajza_ not modelled 45.1 15 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Dihydropteroate synthetase 55 c3icgD_ not modelled 44.3 13 PDB header:hydrolase Chain: D: PDB Molecule:endoglucanase d; PDBTitle: crystal structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans 56 d1qoxa_ not modelled 43.6 20 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Family 1 of glycosyl hydrolase 57 d1gpea2 not modelled 41.3 21 Fold:FAD-linked reductases, C-terminal domain Superfamily:FAD-linked reductases, C-terminal domain Family:GMC oxidoreductases 58 d1f3ta2 not modelled 40.7 15 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 59 c1fcuA_ not modelled 39.6 20 PDB header:hydrolase Chain: A: PDB Molecule:hyaluronoglucosaminidase; PDBTitle: crystal structure (trigonal) of bee venom hyaluronidase 60 d1fcqa_ not modelled 39.1 20 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Bee venom hyaluronidase 61 c2j75A_ not modelled 38.8 20 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase a; PDBTitle: beta-glucosidase from thermotoga maritima in complex with2 noeuromycin 62 c3tdmD_ not modelled 36.4 10 PDB header:de novo protein Chain: D: PDB Molecule:computationally designed two-fold symmetric tim-barrel PDBTitle: computationally designed tim-barrel protein, halfflr 63 c2zoxA_ not modelled 35.9 21 PDB header:hydrolase Chain: A: PDB Molecule:cytosolic beta-glucosidase; PDBTitle: crystal structure of the covalent intermediate of human cytosolic2 beta-glucosidase 64 c1tvlA_ not modelled 35.7 18 PDB header:oxidoreductase Chain: A: PDB Molecule:protein ytnj; PDBTitle: structure of ytnj from bacillus subtilis 65 d1tvla_ not modelled 35.7 18 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Ssud-like monoxygenases 66 c2atmA_ not modelled 31.6 25 PDB header:hydrolase Chain: A: PDB Molecule:hyaluronoglucosaminidase; PDBTitle: crystal structure of the recombinant allergen ves v 2 67 c2zunB_ not modelled 30.4 11 PDB header:hydrolase Chain: B: PDB Molecule:458aa long hypothetical endo-1,4-beta-glucanase; PDBTitle: functional analysis of hyperthermophilic endocellulase from2 the archaeon pyrococcus horikoshii 68 c2pe4A_ not modelled 30.2 20 PDB header:hydrolase Chain: A: PDB Molecule:hyaluronidase-1; PDBTitle: structure of human hyaluronidase 1, a hyaluronan hydrolyzing enzyme2 involved in tumor growth and angiogenesis 69 d7odca2 not modelled 29.2 13 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 70 c3aysA_ not modelled 27.8 14 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase; PDBTitle: gh5 endoglucanase from a ruminal fungus in complex with cellotriose 71 d1b74a1 not modelled 27.1 19 Fold:ATC-like Superfamily:Aspartate/glutamate racemase Family:Aspartate/glutamate racemase 72 c3ianA_ not modelled 26.9 17 PDB header:hydrolase Chain: A: PDB Molecule:chitinase; PDBTitle: crystal structure of a chitinase from lactococcus lactis2 subsp. lactis 73 c2x1lC_ not modelled 26.1 19 PDB header:ligase Chain: C: PDB Molecule:methionyl-trna synthetase; PDBTitle: crystal structure of mycobacterium smegmatis methionyl-trna2 synthetase in complex with methionine and adenosine 74 c2yztA_ not modelled 25.3 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative uncharacterized protein ttha1756; PDBTitle: crystal structure of uncharacterized conserved protein from thermus2 thermophilus hb8 75 c3raoB_ not modelled 25.1 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative luciferase-like monooxygenase; PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus atcc 10987. 76 c2dgaA_ not modelled 22.2 19 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: crystal structure of hexameric beta-glucosidase in wheat 77 d1eoka_ not modelled 21.4 9 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Type II chitinase 78 c3qomA_ not modelled 20.9 16 PDB header:hydrolase Chain: A: PDB Molecule:6-phospho-beta-glucosidase; PDBTitle: crystal structure of 6-phospho-beta-glucosidase from lactobacillus2 plantarum 79 c3tqoA_ not modelled 19.3 14 PDB header:ligase Chain: A: PDB Molecule:cysteinyl-trna synthetase; PDBTitle: structure of the cysteinyl-trna synthetase (cyss) from coxiella2 burnetii. 80 c1j0yD_ not modelled 19.0 24 PDB header:hydrolase Chain: D: PDB Molecule:beta-amylase; PDBTitle: beta-amylase from bacillus cereus var. mycoides in complex2 with glucose 81 c1d7kB_ not modelled 19.0 12 PDB header:lyase Chain: B: PDB Molecule:human ornithine decarboxylase; PDBTitle: crystal structure of human ornithine decarboxylase at 2.12 angstroms resolution 82 c1uz4A_ not modelled 18.7 7 PDB header:hydrolase Chain: A: PDB Molecule:man5a; PDBTitle: common inhibition of beta-glucosidase and beta-mannosidase2 by isofagomine lactam reflects different conformational3 intineraries for glucoside and mannoside hydrolysis 83 d1uuqa_ not modelled 18.7 7 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 84 d1jvna1 not modelled 18.7 24 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes 85 d1qo2a_ not modelled 18.1 11 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes 86 c2w91A_ not modelled 17.8 19 PDB header:hydrolase Chain: A: PDB Molecule:endo-beta-n-acetylglucosaminidase d; PDBTitle: structure of a streptococcus pneumoniae family 85 glycoside2 hydrolase, endo-d. 87 c1zorB_ not modelled 16.3 22 PDB header:oxidoreductase Chain: B: PDB Molecule:isocitrate dehydrogenase; PDBTitle: isocitrate dehydrogenase from the hyperthermophile thermotoga maritima 88 c3pt5A_ not modelled 16.0 11 PDB header:hydrolase Chain: A: PDB Molecule:nans (yjhs), a 9-o-acetyl n-acetylneuraminic acid esterase; PDBTitle: crystal structure of nans 89 c2dwuA_ not modelled 15.0 17 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase isoform race1 from bacillus2 anthracis 90 d1kpga_ not modelled 14.4 21 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:Mycolic acid cyclopropane synthase 91 c3gndC_ not modelled 12.9 16 PDB header:lyase Chain: C: PDB Molecule:aldolase lsrf; PDBTitle: crystal structure of e. coli lsrf in complex with ribulose-5-phosphate 92 d1d9ea_ not modelled 12.6 14 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I DAHP synthetase 93 c3bwwA_ not modelled 12.1 7 PDB header:metal binding protein Chain: A: PDB Molecule:protein of unknown function duf692/cog3220; PDBTitle: crystal structure of a duf692 family protein (hs_1138) from2 haemophilus somnus 129pt at 2.20 a resolution 94 d2j78a1 not modelled 12.0 20 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Family 1 of glycosyl hydrolase 95 d1d7ka2 not modelled 12.0 13 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 96 c1uasA_ not modelled 11.9 12 PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase; PDBTitle: crystal structure of rice alpha-galactosidase 97 c3gnoA_ not modelled 11.9 14 PDB header:hydrolase Chain: A: PDB Molecule:os03g0212800 protein; PDBTitle: crystal structure of a rice os3bglu6 beta-glucosidase 98 c2yguA_ not modelled 11.8 24 PDB header:allergen Chain: A: PDB Molecule:venom allergen 2; PDBTitle: crystal structure of fire ant venom allergen, sol i 2 99 c3u57A_ not modelled 11.2 20 PDB header:hydrolase Chain: A: PDB Molecule:raucaffricine-o-beta-d-glucosidase; PDBTitle: structures of alkaloid biosynthetic glucosidases decode substrate2 specificity

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0