Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	A	K	D	V	K	F	G	N	D	A	R	V	K	M	L	R	G	V	N	V	L	A	D	A	V	K	V	T	L	G	P	K	G	R	N	V	V	L	D	K	S	F	G	A	P	T	I	T	K	D	G	V	S	V	A	R	E	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?																																?			?	?	?															?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	L	E	D	K	F	E	N	M	G	A	Q	M	V	K	E	V	A	S	K	A	N	D	A	A	G	D	G	T	T	T	A	T	V	L	A	Q	A	I	I	T	E	G	L	K	A	V	A	A	G	M	N	P	M	D	L	K	R	G	I
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	K	A	V	T	A	A	V	E	E	L	K	A	L	S	V	P	C	S	D	S	K	A	I	A	Q	V	G	T	I	S	A	N	S	D	E	T	V	G	K	L	I	A	E	A	M	D	K	V	G	K	E	G	V	I	T	V	E	D	G
Secondary structure
SS confidence
Disorder																																?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	G	L	Q	D	E	L	D	V	V	E	G	M	Q	F	D	R	G	Y	L	S	P	Y	F	I	N	K	P	E	T	G	A	V	E	L	E	S	P	F	I	L	L	A	D	K	K	I	S	N	I	R	E	M	L	P	V	L	E	A	V
Secondary structure
SS confidence
Disorder		?	?																			?	?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	K	A	G	K	P	L	L	I	I	A	E	D	V	E	G	E	A	L	A	T	L	V	V	N	T	M	R	G	I	V	K	V	A	A	V	K	A	P	G	F	G	D	R	R	K	A	M	L	Q	D	I	A	T	L	T	G	G	T	V
Secondary structure
SS confidence
Disorder																																					?	?		?		?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		I	S	E	E	I	G	M	E	L	E	K	A	T	L	E	D	L	G	Q	A	K	R	V	V	I	N	K	D	T	T	T	I	I	D	G	V	G	E	E	A	A	I	Q	G	R	V	A	Q	I	R	Q	Q	I	E	E	A	T	S	D	Y
Secondary structure
SS confidence
Disorder							?																																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		D	R	E	K	L	Q	E	R	V	A	K	L	A	G	G	V	A	V	I	K	V	G	A	A	T	E	V	E	M	K	E	K	K	A	R	V	E	D	A	L	H	A	T	R	A	A	V	E	E	G	V	V	A	G	G	G	V	A	L	I
Secondary structure
SS confidence
Disorder												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		R	V	A	S	K	L	A	D	L	R	G	Q	N	E	D	Q	N	V	G	I	K	V	A	L	R	A	M	E	A	P	L	R	Q	I	V	L	N	C	G	E	E	P	S	V	V	A	N	T	V	K	G	G	D	G	N	Y	G	Y	N	A
Secondary structure
SS confidence
Disorder											?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		A	T	E	E	Y	G	N	M	I	D	M	G	I	L	D	P	T	K	V	T	R	S	A	L	Q	Y	A	A	S	V	A	G	L	M	I	T	T	E	C	M	V	T	D	L	P	K	N	D	A	A	D	L	G	A	A	G	G	M	G	G
Secondary structure
SS confidence
Disorder																																												?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.
Sequence		M	G	G	M	G	G	M	M
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1kp8 chain B Region: 2 - 526 Aligned: 525 Modelled: 525 Confidence: 100.0% Identity: 99% PDB header:chaperone Chain: B: PDB Molecule:groel protein; PDBTitle: structural basis for groel-assisted protein folding from2 the crystal structure of (groel-kmgatp)14 at 2.0 a3 resolution Phyre2 PDB 1we3 chain D Region: 3 - 526 Aligned: 523 Modelled: 524 Confidence: 100.0% Identity: 63% PDB header:chaperone Chain: D: PDB Molecule:cpn60(groel); PDBTitle: crystal structure of the chaperonin complex2 cpn60/cpn10/(adp)7 from thermus thermophilus Phyre2 PDB 1iok chain E Region: 2 - 525 Aligned: 481 Modelled: 492 Confidence: 100.0% Identity: 69% PDB header:chaperone Chain: E: PDB Molecule:chaperonin 60; PDBTitle: crystal structure of chaperonin-60 from paracoccus2 denitrificans Phyre2 PDB 3iyg chain E Region: 3 - 523 Aligned: 471 Modelled: 487 Confidence: 100.0% Identity: 20% PDB header:chaperone Chain: E: PDB Molecule:t-complex protein 1 subunit; PDBTitle: ca model of bovine tric/cct derived from a 4.0 angstrom2 cryo-em map Phyre2 PDB 1q2v chain A Region: 2 - 525 Aligned: 469 Modelled: 485 Confidence: 100.0% Identity: 23% PDB header:chaperone Chain: A: PDB Molecule:thermosome alpha subunit; PDBTitle: crystal structure of the chaperonin from thermococcus strain ks-12 (nucleotide-free form) Phyre2 PDB 3p9e chain I Region: 3 - 533 Aligned: 481 Modelled: 492 Confidence: 100.0% Identity: 20% PDB header:chaperone Chain: I: PDB Molecule: PDBTitle: the crystal structure of yeast cct reveals intrinsic asymmetry of2 eukaryotic cytosolic chaperonins Phyre2 PDB 3izk chain F Region: 2 - 524 Aligned: 464 Modelled: 488 Confidence: 100.0% Identity: 23% PDB header:chaperone Chain: F: PDB Molecule:chaperonin; PDBTitle: mm-cpn rls deltalid with atp Phyre2 PDB 3iyg chain D Region: 2 - 524 Aligned: 472 Modelled: 489 Confidence: 100.0% Identity: 22% PDB header:chaperone Chain: D: PDB Molecule:t-complex protein 1 subunit delta; PDBTitle: ca model of bovine tric/cct derived from a 4.0 angstrom2 cryo-em map Phyre2 PDB 3ko1 chain H Region: 9 - 523 Aligned: 460 Modelled: 476 Confidence: 100.0% Identity: 22% PDB header:chaperone Chain: H: PDB Molecule:chaperonin; PDBTitle: cystal structure of thermosome from acidianus tengchongensis strain s5 Phyre2 PDB 3iyg chain A Region: 9 - 525 Aligned: 467 Modelled: 467 Confidence: 100.0% Identity: 21% PDB header:chaperone Chain: A: PDB Molecule:t-complex protein 1 subunit alpha; PDBTitle: ca model of bovine tric/cct derived from a 4.0 angstrom2 cryo-em map Phyre2 PDB 1sjp chain A Region: 66 - 518 Aligned: 447 Modelled: 452 Confidence: 100.0% Identity: 57% PDB header:chaperone Chain: A: PDB Molecule:60 kda chaperonin 2; PDBTitle: mycobacterium tuberculosis chaperonin60.2 Phyre2 PDB 3p9e chain E Region: 2 - 525 Aligned: 474 Modelled: 490 Confidence: 100.0% Identity: 22% PDB header:chaperone Chain: E: PDB Molecule: PDBTitle: the crystal structure of yeast cct reveals intrinsic asymmetry of2 eukaryotic cytosolic chaperonins Phyre2 PDB 3los chain C Region: 2 - 537 Aligned: 484 Modelled: 490 Confidence: 100.0% Identity: 23% PDB header:chaperone Chain: C: PDB Molecule:chaperonin; PDBTitle: atomic model of mm-cpn in the closed state Phyre2 PDB 1a6e chain A Region: 9 - 521 Aligned: 458 Modelled: 478 Confidence: 100.0% Identity: 24% PDB header:chaperonin Chain: A: PDB Molecule:thermosome (alpha subunit); PDBTitle: thermosome-mg-adp-alf3 complex Phyre2 PDB 3iyg chain G Region: 4 - 525 Aligned: 467 Modelled: 476 Confidence: 100.0% Identity: 21% PDB header:chaperone Chain: G: PDB Molecule:t-complex protein 1 subunit gamma; PDBTitle: ca model of bovine tric/cct derived from a 4.0 angstrom2 cryo-em map Phyre2 PDB 3p9e chain N Region: 1 - 525 Aligned: 469 Modelled: 485 Confidence: 100.0% Identity: 19% PDB header:chaperone Chain: N: PDB Molecule: PDBTitle: the crystal structure of yeast cct reveals intrinsic asymmetry of2 eukaryotic cytosolic chaperonins Phyre2 PDB 3iyg chain Q Region: 3 - 524 Aligned: 469 Modelled: 469 Confidence: 100.0% Identity: 20% PDB header:chaperone Chain: Q: PDB Molecule:t-complex protein 1 subunit theta; PDBTitle: ca model of bovine tric/cct derived from a 4.0 angstrom2 cryo-em map Phyre2 PDB 3iyg chain Z Region: 2 - 523 Aligned: 470 Modelled: 470 Confidence: 100.0% Identity: 17% PDB header:chaperone Chain: Z: PDB Molecule:t-complex protein 1 subunit zeta; PDBTitle: ca model of bovine tric/cct derived from a 4.0 angstrom2 cryo-em map Phyre2 PDB 3p9d chain L Region: 2 - 524 Aligned: 474 Modelled: 491 Confidence: 100.0% Identity: 21% PDB header:chaperone Chain: L: PDB Molecule:t-complex protein 1 subunit delta; PDBTitle: the crystal structure of yeast cct reveals intrinsic asymmetry of2 eukaryotic cytosolic chaperonins Phyre2 PDB 3p9e chain O Region: 3 - 527 Aligned: 468 Modelled: 488 Confidence: 100.0% Identity: 21% PDB header:chaperone Chain: O: PDB Molecule: PDBTitle: the crystal structure of yeast cct reveals intrinsic asymmetry of2 eukaryotic cytosolic chaperonins Phyre2 1 c1kp8B_ 2 c1we3D_ 3 c1iokE_ 4 c3iygE_ 5 c1q2vA_ 6 c3p9ei_ 7 c3izkF_ 8 c3iygD_ 9 c3ko1H_ 10 c3iygA_ 11 c1sjpA_ 12 c3p9ee_ 13 c3losC_ 14 c1a6eA_ 15 c3iygG_ 16 c3p9en_ 17 c3iygQ_ 18 c3iygZ_ 19 c3p9dL_ 20 c3p9eo_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1kp8B_ 100.0 99 PDB header:chaperone Chain: B: PDB Molecule:groel protein; PDBTitle: structural basis for groel-assisted protein folding from2 the crystal structure of (groel-kmgatp)14 at 2.0 a3 resolution 2 c1we3D_ 100.0 63 PDB header:chaperone Chain: D: PDB Molecule:cpn60(groel); PDBTitle: crystal structure of the chaperonin complex2 cpn60/cpn10/(adp)7 from thermus thermophilus 3 c1iokE_ 100.0 69 PDB header:chaperone Chain: E: PDB Molecule:chaperonin 60; PDBTitle: crystal structure of chaperonin-60 from paracoccus2 denitrificans 4 c3iygE_ 100.0 20 PDB header:chaperone Chain: E: PDB Molecule:t-complex protein 1 subunit; PDBTitle: ca model of bovine tric/cct derived from a 4.0 angstrom2 cryo-em map 5 c1q2vA_ 100.0 23 PDB header:chaperone Chain: A: PDB Molecule:thermosome alpha subunit; PDBTitle: crystal structure of the chaperonin from thermococcus strain ks-12 (nucleotide-free form) 6 c3p9ei_ 100.0 20 PDB header:chaperone Chain: I: PDB Molecule: PDBTitle: the crystal structure of yeast cct reveals intrinsic asymmetry of2 eukaryotic cytosolic chaperonins 7 c3izkF_ 100.0 23 PDB header:chaperone Chain: F: PDB Molecule:chaperonin; PDBTitle: mm-cpn rls deltalid with atp 8 c3iygD_ 100.0 22 PDB header:chaperone Chain: D: PDB Molecule:t-complex protein 1 subunit delta; PDBTitle: ca model of bovine tric/cct derived from a 4.0 angstrom2 cryo-em map 9 c3ko1H_ 100.0 22 PDB header:chaperone Chain: H: PDB Molecule:chaperonin; PDBTitle: cystal structure of thermosome from acidianus tengchongensis strain s5 10 c3iygA_ 100.0 21 PDB header:chaperone Chain: A: PDB Molecule:t-complex protein 1 subunit alpha; PDBTitle: ca model of bovine tric/cct derived from a 4.0 angstrom2 cryo-em map 11 c1sjpA_ 100.0 57 PDB header:chaperone Chain: A: PDB Molecule:60 kda chaperonin 2; PDBTitle: mycobacterium tuberculosis chaperonin60.2 12 c3p9ee_ 100.0 22 PDB header:chaperone Chain: E: PDB Molecule: PDBTitle: the crystal structure of yeast cct reveals intrinsic asymmetry of2 eukaryotic cytosolic chaperonins 13 c3losC_ 100.0 23 PDB header:chaperone Chain: C: PDB Molecule:chaperonin; PDBTitle: atomic model of mm-cpn in the closed state 14 c1a6eA_ 100.0 24 PDB header:chaperonin Chain: A: PDB Molecule:thermosome (alpha subunit); PDBTitle: thermosome-mg-adp-alf3 complex 15 c3iygG_ 100.0 21 PDB header:chaperone Chain: G: PDB Molecule:t-complex protein 1 subunit gamma; PDBTitle: ca model of bovine tric/cct derived from a 4.0 angstrom2 cryo-em map 16 c3p9en_ 100.0 19 PDB header:chaperone Chain: N: PDB Molecule: PDBTitle: the crystal structure of yeast cct reveals intrinsic asymmetry of2 eukaryotic cytosolic chaperonins 17 c3iygQ_ 100.0 20 PDB header:chaperone Chain: Q: PDB Molecule:t-complex protein 1 subunit theta; PDBTitle: ca model of bovine tric/cct derived from a 4.0 angstrom2 cryo-em map 18 c3iygZ_ 100.0 17 PDB header:chaperone Chain: Z: PDB Molecule:t-complex protein 1 subunit zeta; PDBTitle: ca model of bovine tric/cct derived from a 4.0 angstrom2 cryo-em map 19 c3p9dL_ 100.0 21 PDB header:chaperone Chain: L: PDB Molecule:t-complex protein 1 subunit delta; PDBTitle: the crystal structure of yeast cct reveals intrinsic asymmetry of2 eukaryotic cytosolic chaperonins 20 c3p9eo_ 100.0 21 PDB header:chaperone Chain: O: PDB Molecule: PDBTitle: the crystal structure of yeast cct reveals intrinsic asymmetry of2 eukaryotic cytosolic chaperonins 21 c3kttB_ not modelled 100.0 25 PDB header:chaperone Chain: B: PDB Molecule:t-complex protein 1 subunit beta; PDBTitle: atomic model of bovine tric cct2(beta) subunit derived from2 a 4.0 angstrom cryo-em map 22 c3p9dP_ not modelled 100.0 20 PDB header:chaperone Chain: P: PDB Molecule:t-complex protein 1 subunit theta; PDBTitle: the crystal structure of yeast cct reveals intrinsic asymmetry of2 eukaryotic cytosolic chaperonins 23 c1a6eB_ not modelled 100.0 24 PDB header:chaperonin Chain: B: PDB Molecule:thermosome (beta subunit); PDBTitle: thermosome-mg-adp-alf3 complex 24 c3iygH_ not modelled 100.0 23 PDB header:chaperone Chain: H: PDB Molecule:t-complex protein 1 subunit eta; PDBTitle: ca model of bovine tric/cct derived from a 4.0 angstrom2 cryo-em map 25 c3p9eb_ not modelled 100.0 22 PDB header:chaperone Chain: B: PDB Molecule: PDBTitle: the crystal structure of yeast cct reveals intrinsic asymmetry of2 eukaryotic cytosolic chaperonins 26 c3p9ec_ not modelled 100.0 22 PDB header:chaperone Chain: C: PDB Molecule: PDBTitle: the crystal structure of yeast cct reveals intrinsic asymmetry of2 eukaryotic cytosolic chaperonins 27 c3rtkA_ not modelled 100.0 60 PDB header:chaperone Chain: A: PDB Molecule:60 kda chaperonin 2; PDBTitle: crystal structure of cpn60.2 from mycobacterium tuberculosis at 2.8a 28 c3aq1B_ not modelled 100.0 24 PDB header:chaperone Chain: B: PDB Molecule:thermosome subunit; PDBTitle: open state monomer of a group ii chaperonin from methanococcoides2 burtonii 29 d1q3qa1 not modelled 100.0 33 Fold:GroEL equatorial domain-like Superfamily:GroEL equatorial domain-like Family:Group II chaperonin (CCT, TRIC), ATPase domain 30 d1a6db1 not modelled 100.0 35 Fold:GroEL equatorial domain-like Superfamily:GroEL equatorial domain-like Family:Group II chaperonin (CCT, TRIC), ATPase domain 31 d1a6da1 not modelled 100.0 38 Fold:GroEL equatorial domain-like Superfamily:GroEL equatorial domain-like Family:Group II chaperonin (CCT, TRIC), ATPase domain 32 d1we3a1 not modelled 100.0 67 Fold:GroEL equatorial domain-like Superfamily:GroEL equatorial domain-like Family:GroEL chaperone, ATPase domain 33 d1kp8a1 not modelled 100.0 100 Fold:GroEL equatorial domain-like Superfamily:GroEL equatorial domain-like Family:GroEL chaperone, ATPase domain 34 d1ioka1 not modelled 100.0 73 Fold:GroEL equatorial domain-like Superfamily:GroEL equatorial domain-like Family:GroEL chaperone, ATPase domain 35 c3m6cA_ not modelled 100.0 55 PDB header:chaperone Chain: A: PDB Molecule:60 kda chaperonin 1; PDBTitle: crystal structure of mycobacterium tuberculosis groel1 apical domain 36 d1kida_ not modelled 100.0 97 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 37 d1we3a2 not modelled 100.0 65 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 38 d1sjpa2 not modelled 100.0 66 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 39 d1oela2 not modelled 100.0 99 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 40 d1sjpa1 not modelled 100.0 40 Fold:GroEL equatorial domain-like Superfamily:GroEL equatorial domain-like Family:GroEL chaperone, ATPase domain 41 d1dk7a_ not modelled 100.0 100 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 42 d1srva_ not modelled 100.0 69 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 43 d1ioka2 not modelled 99.9 74 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:GroEL-like chaperone, apical domain 44 d1gmla_ not modelled 99.6 18 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 45 d1q3qa2 not modelled 99.4 19 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 46 d1a6db2 not modelled 99.4 20 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 47 d1assa_ not modelled 99.4 20 Fold:The "swivelling" beta/beta/alpha domain Superfamily:GroEL apical domain-like Family:Group II chaperonin (CCT, TRIC), apical domain 48 d1sjpa3 not modelled 99.0 31 Fold:GroEL-intermediate domain like Superfamily:GroEL-intermediate domain like Family:GroEL-like chaperone, intermediate domain 49 d1kp8a3 not modelled 99.0 66 Fold:GroEL-intermediate domain like Superfamily:GroEL-intermediate domain like Family:GroEL-like chaperone, intermediate domain 50 d1a6db3 not modelled 98.9 12 Fold:GroEL-intermediate domain like Superfamily:GroEL-intermediate domain like Family:Group II chaperonin (CCT, TRIC), intermediate domain 51 d1q3qa3 not modelled 98.8 20 Fold:GroEL-intermediate domain like Superfamily:GroEL-intermediate domain like Family:Group II chaperonin (CCT, TRIC), intermediate domain 52 d1a6da3 not modelled 98.7 10 Fold:GroEL-intermediate domain like Superfamily:GroEL-intermediate domain like Family:Group II chaperonin (CCT, TRIC), intermediate domain 53 d1ioka3 not modelled 98.5 80 Fold:GroEL-intermediate domain like Superfamily:GroEL-intermediate domain like Family:GroEL-like chaperone, intermediate domain 54 d1we3a3 not modelled 97.5 51 Fold:GroEL-intermediate domain like Superfamily:GroEL-intermediate domain like Family:GroEL-like chaperone, intermediate domain 55 d1d7ya2 not modelled 22.3 22 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 56 d1q1ra2 not modelled 17.4 31 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 57 d1m6ia2 not modelled 12.0 19 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 58 c2ogxA_ not modelled 11.8 18 PDB header:metal binding protein Chain: A: PDB Molecule:molybdenum storage protein subunit alpha; PDBTitle: the crystal structure of the molybdenum storage protein from2 azotobacter vinelandii loaded with polyoxotungstates (wsto) 59 c2ah6B_ not modelled 11.0 16 PDB header:transferase Chain: B: PDB Molecule:bh1595, unknown conserved protein; PDBTitle: crystal structure of a putative cobalamin adenosyltransferase (bh1595)2 from bacillus halodurans c-125 at 1.60 a resolution 60 d1ovma1 not modelled 10.0 13 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 61 d3e5ua1 not modelled 9.8 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CAP C-terminal domain-like 62 c3tekA_ not modelled 9.3 29 PDB header:dna binding protein Chain: A: PDB Molecule:thermodbp-single stranded dna binding protein; PDBTitle: thermodbp: a non-canonical single-stranded dna binding protein with a2 novel structure and mechanism 63 d1xhca2 not modelled 8.7 24 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 64 d2a29a1 not modelled 8.2 13 Fold:Metal cation-transporting ATPase, ATP-binding domain N Superfamily:Metal cation-transporting ATPase, ATP-binding domain N Family:Metal cation-transporting ATPase, ATP-binding domain N 65 c3nrdB_ not modelled 7.9 17 PDB header:nucleotide binding protein Chain: B: PDB Molecule:histidine triad (hit) protein; PDBTitle: crystal structure of a histidine triad (hit) protein (smc02904) from2 sinorhizobium meliloti 1021 at 2.06 a resolution 66 c2veqA_ not modelled 7.8 8 PDB header:cell cycle Chain: A: PDB Molecule:centromere dna-binding protein complex cbf3 PDBTitle: insights into kinetochore-dna interactions from the2 structure of cep3p 67 c2f8mB_ not modelled 7.8 18 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: ribose 5-phosphate isomerase from plasmodium falciparum 68 c2b0tA_ not modelled 7.8 15 PDB header:oxidoreductase Chain: A: PDB Molecule:nadp isocitrate dehydrogenase; PDBTitle: structure of monomeric nadp isocitrate dehydrogenase 69 c2xdqA_ not modelled 7.4 19 PDB header:oxidoreductase Chain: A: PDB Molecule:light-independent protochlorophyllide reductase subunit n; PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-2 chlb)2 complex 70 d1ijwc_ not modelled 7.4 12 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 71 d1itwa_ not modelled 7.3 13 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Monomeric isocitrate dehydrogenase 72 c3cwcB_ not modelled 7.3 22 PDB header:transferase Chain: B: PDB Molecule:putative glycerate kinase 2; PDBTitle: crystal structure of putative glycerate kinase 2 from salmonella2 typhimurium lt2 73 c2x48B_ not modelled 7.0 6 PDB header:viral protein Chain: B: PDB Molecule:cag38821; PDBTitle: orf 55 from sulfolobus islandicus rudivirus 1 74 c3i24B_ not modelled 6.9 11 PDB header:hydrolase Chain: B: PDB Molecule:hit family hydrolase; PDBTitle: crystal structure of a hit family hydrolase protein from2 vibrio fischeri. northeast structural genomics consortium3 target id vfr176 75 c2kztA_ not modelled 6.8 14 PDB header:apoptosis Chain: A: PDB Molecule:programmed cell death protein 4; PDBTitle: structure of the tandem ma-3 region of pdcd4 76 c2jnhA_ not modelled 6.8 24 PDB header:ligase Chain: A: PDB Molecule:e3 ubiquitin-protein ligase cbl-b; PDBTitle: solution structure of the uba domain from cbl-b 77 d2nvma1 not modelled 6.8 21 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 78 c1z8yP_ not modelled 6.7 16 PDB header:virus Chain: P: PDB Molecule:spike glycoprotein e2; PDBTitle: mapping the e2 glycoprotein of alphaviruses 79 c1z8yJ_ not modelled 6.7 16 PDB header:virus Chain: J: PDB Molecule:spike glycoprotein e2; PDBTitle: mapping the e2 glycoprotein of alphaviruses 80 c1z8yL_ not modelled 6.7 16 PDB header:virus Chain: L: PDB Molecule:spike glycoprotein e2; PDBTitle: mapping the e2 glycoprotein of alphaviruses 81 c1z8yN_ not modelled 6.7 16 PDB header:virus Chain: N: PDB Molecule:spike glycoprotein e2; PDBTitle: mapping the e2 glycoprotein of alphaviruses 82 d1gv4a2 not modelled 6.6 22 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 83 d1o5ha_ not modelled 6.5 50 Fold:Methenyltetrahydrofolate cyclohydrolase-like Superfamily:Methenyltetrahydrofolate cyclohydrolase-like Family:Methenyltetrahydrofolate cyclohydrolase-like 84 c1rg9D_ not modelled 6.3 42 PDB header:transferase Chain: D: PDB Molecule:s-adenosylmethionine synthetase; PDBTitle: s-adenosylmethionine synthetase complexed with sam and ppnp 85 d1fita_ not modelled 6.3 6 Fold:HIT-like Superfamily:HIT-like Family:HIT (HINT, histidine triad) family of protein kinase-interacting proteins 86 c3so4C_ not modelled 6.2 42 PDB header:transferase Chain: C: PDB Molecule:methionine-adenosyltransferase; PDBTitle: methionine-adenosyltransferase from entamoeba histolytica 87 c3rv2B_ not modelled 6.0 33 PDB header:transferase Chain: B: PDB Molecule:s-adenosylmethionine synthase; PDBTitle: crystal structure of s-adenosylmethionine synthetase from2 mycobacterium marinum 88 c3imlB_ not modelled 5.9 33 PDB header:transferase Chain: B: PDB Molecule:s-adenosylmethionine synthetase; PDBTitle: crystal structure of s-adenosylmethionine synthetase from burkholderia2 pseudomallei 89 d1m1na_ not modelled 5.9 22 Fold:Chelatase-like Superfamily:"Helical backbone" metal receptor Family:Nitrogenase iron-molybdenum protein 90 d2h6ca1 not modelled 5.8 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:CAP C-terminal domain-like 91 d2nlva1 not modelled 5.8 21 Fold:XisI-like Superfamily:XisI-like Family:XisI-like 92 c2obvA_ not modelled 5.8 42 PDB header:transferase Chain: A: PDB Molecule:s-adenosylmethionine synthetase isoform type-1; PDBTitle: crystal structure of the human s-adenosylmethionine synthetase 1 in2 complex with the product 93 c2p9wA_ not modelled 5.7 11 PDB header:allergen Chain: A: PDB Molecule:mal s 1 allergenic protein; PDBTitle: crystal structure of the major malassezia sympodialis allergen mala s2 1 94 d3bula1 not modelled 5.6 9 Fold:Methionine synthase domain-like Superfamily:Methionine synthase domain Family:Methionine synthase domain 95 d1hcra_ not modelled 5.5 13 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 96 d1wv3a2 not modelled 5.4 27 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:EssC N-terminal domain-like 97 c2koyA_ not modelled 5.4 12 PDB header:metal transport Chain: A: PDB Molecule:copper-transporting atpase 2; PDBTitle: structure of the e1064a mutant of the n-domain of wilson disease2 associated protein 98 d1v97a6 not modelled 5.3 19 Fold:FAD-binding/transporter-associated domain-like Superfamily:FAD-binding/transporter-associated domain-like Family:CO dehydrogenase flavoprotein N-terminal domain-like 99 c3kinB_ not modelled 5.3 14 PDB header:motor protein Chain: B: PDB Molecule:kinesin heavy chain; PDBTitle: kinesin (dimeric) from rattus norvegicus

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0