25 c3csgA_ Probab=100.00  E-value=0  Score=329.00  Aligned_columns=364  Identities=18%

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCCCCCC
Q ss_conf             89996387824899999999999987798089999769989999999999967898729997270179999739888730
Q batch____        26 TIPFWHSMEGELGKEVDSLAQRFNAENPDYKIVPTYKGNYEQNLSAGIAAFRTGNAPAILQVYEVGTATMMASKAIKPVY  105 (438)
Q Consensus        26 tit~w~~~~~~~~~~~~~~i~~F~~~~p~i~V~~~~~~~~~~~~~kl~~~~~sg~~PDi~~~~~~~~~~~~~~g~l~~l~  105 (438)
                      +|++|. +++...+.+++++++|||+ |||+|+++..++   +.+|+.+++++|++|||+.++..++..|+++|+|.||+
T Consensus         1 ~l~vW~-~~~~~~~~~~e~~~~Fek~-tGIkV~~~~~~d---~~~kl~~~~asG~~PDI~~~~~~~~~~~~~~G~L~~L~   75 (458)
T c3csgA_           1 KLVIWI-NGDKGYNGLAEVGKKFEKD-TGIKVTVEHPDK---LEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEIT   75 (458)
T ss_dssp             CEEEEC-CTTSCHHHHHHHHHHHHHH-HCCCEEEECCTT---HHHHHHHHHTTTCSCSEEEEEHHHHHHHHHTTCBCCCC
T ss_pred             CEEEEE-ECCCHHHHHHHHHHHHHHC-CCCEEEEEECCC---HHHHHHHHHHCCCCCCEEEECCHHHHHHHHCCCEECCC
T ss_conf             589997-0853578999999987203-796899986210---79999999838999719998721278899789821378


Q ss_pred             HHHCCCCCCCCHHHCCCCHHHHCCCCCCCEEEEEEECCCEEEEEECHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf             11002434467443135355511156488789996058624664001568875998888878989999999999824788
Q batch____       106 DVFKEAGIQFDESQFVPTVSGYYSDSKTGHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLADYAAKLKASGMK  185 (438)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~y~iP~~~~~~~l~ynkd~~~~~G~~~~~~p~Twde~~~~~~~l~~~~~~  185 (438)
                      ++        ...........+..+++||++||||+..++.+++||||+|       ++.|+|||||.++|+++++++..
T Consensus        76 ~~--------~~~~d~~~~~~~~~~~~dGk~YgiP~~~~~~~l~YNkdlf-------~e~P~Twdel~~~a~klk~~g~~  140 (458)
T c3csgA_          76 PD--------KAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLL-------PNPPKTWEEIPALDKELKAKGKS  140 (458)
T ss_dssp             CC--------HHHHTTBCHHHHHTTEETTEECSEEEEEECCEEEEETTTC-------SSCCSBGGGHHHHHHHHHTTTCE
T ss_pred             CH--------HHHHHHHHHHHHHHEEECCEEEEEECCCCEEEEEEEHHHH-------CCCCCCHHHHHHHHHHHHHCCCC
T ss_conf             10--------4356530256563077889799975277147999806661-------21236888999999998857983


Q ss_pred             CEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf             50522565434368899998631135785112568855567989999999999999732888776523456777448701
Q batch____       186 CGYASGWQGWIQLENFSAWNGLPFASKNNGFDGTDAVLEFNKPEQVKHIAMLEEMNKKGDFSYVGRKDESTEKFYNGDCA  265 (438)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~a  265 (438)
                      +...................+......+...+  ..+..+++|+.+++++++.+|++++..+...++.+....|.+|+++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~--~~~~~l~sp~~~~al~~~~~l~~~g~~~~~~~~~~~~~~F~~G~~a  218 (458)
T c3csgA_         141 ALMFNLQEPYFTWPLIAADGGYAFKYENGKYD--IKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETA  218 (458)
T ss_dssp             EECCCTTCHHHHHHHHHHTTCEEEEECSSSEE--EEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEE
T ss_pred             EEEECCCCHHHHHHHHHHHCCHHCCCCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCEE
T ss_conf             06733642057999999856420012685234--5663438999999999999999708989888977898998649745


Q ss_pred             EEEECCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHH-HHCCHHHHHHHHHHC
Q ss_conf             7850602589887333345777999616777666652223541389970777532588999999-984989999999852
Q batch____       266 MTTASSGSLANIREYAKFNYGVGMMPYDADAKDAPQNAIIGGASLWVMQGKDKETYTGVAKFLD-FLAKPENAAEWHQKT  344 (438)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~fl~-~l~s~e~~~~~~~~~  344 (438)
                      |++.|.|.+..+.+ ...++++.++|.+.+.......     .+..+.+++.++|+++|++||+ |+.+++.+..+....
T Consensus       219 m~~~g~w~~~~~~~-~~~~~~v~~~P~~~g~~~~~~~-----g~~~~~I~~~SknkeaA~~Fl~~~~~s~e~~~~~~~~~  292 (458)
T c3csgA_         219 MTINGPWAWSNIDT-SKVNYGVTVLPTFKGQPSKPFV-----GVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDK  292 (458)
T ss_dssp             EEEECGGGHHHHHH-HTCCEEEECCCEETTEECCCEE-----EEEEEEEBTTCTTHHHHHHHHHHTTSSHHHHHHHHHHS
T ss_pred             EEEECHHHHHHHHC-CCCCCCEEECCCCCCCCCCCEE-----EEEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHCC
T ss_conf             99845033556741-7986136871356888774167-----87889982898798999999998839989999997318


Q ss_pred             CCCCCCHHHHCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             99767655523534223420185589999999836666766655566379999999999999982789989999999999
Q batch____       345 GYLPITKAAYDLTREQGFYEKNPGADTATRQMLNKPPLPFTKGLRLGNMPQIRVIVDEELESVWTGKKTPQQALDTAVER  424 (438)
Q Consensus       345 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~eeal~~~~~~  424 (438)
                      +..|.+.....     .....+|.+..+.+.+..+...|     ..+.+.++++.+.++++.++.|++|+||||++++++
T Consensus       293 ~~~~~~~~~~~-----~~~~~~p~~~~~~~~~~~~~~~P-----~~p~~~~i~~~i~~al~~a~~G~~t~eeAL~dAq~~  362 (458)
T c3csgA_         293 PLGAVALKSYE-----EELAKDPRIAATMENAQKGEIMP-----NIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTR  362 (458)
T ss_dssp             CCCEESBHHHH-----HHHTTSHHHHHHHHHHHHSEECC-----CSTTHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCC-----HHHHCCHHHHHHHHHHHCCCCCC-----CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf             98874210011-----14431832899999874283466-----884488899999999999850356789999999998


Q ss_pred             HHH
Q ss_conf             999
Q batch____       425 GNQ  427 (438)
Q Consensus       425 ~~~  427 (438)
                      +.+
T Consensus       363 v~~  365 (458)
T c3csgA_         363 ITK  365 (458)
T ss_dssp             HHS
T ss_pred             HHC
T ss_conf             632